DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.418e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.038573

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1967 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	18259275	3L_18259275_SNP [dm3] 3L_18266175_SNP [dm6]	C	T	4.024e^-8	0.075	INTERGENIC
3L	16036130	3L_16036130_SNP [dm3] 3L_16043030_SNP [dm6]	C	T	3.659e^-7	0.193	UTR_5_PRIME th UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv
2L	21725984	2L_21725984_SNP [dm3] 2L_21725984_SNP [dm6]	G	T	4.101e^-7	0.193	INTRON CG31619
3R	18614546	3R_18614546_SNP [dm3] 3R_22788824_SNP [dm6]	A	G	4.764e^-7	0.193	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17366051	3L_17366051_SNP [dm3] 3L_17372951_SNP [dm6]	T	G	5.294e^-7	0.193	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18614460	3R_18614460_SNP [dm3] 3R_22788738_SNP [dm6]	C	T	6.178e^-7	0.193	NON_SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8982738	2L_8982738_INS [dm3] 2L_8982738_INS [dm6]	T	TT	9.043e^-7	0.24	INTRON CG13101
3R	18614115	3R_18614115_SNP [dm3] 3R_22788393_SNP [dm6]	C	A	1.023e^-6	0.24	SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	6670765	2R_6670765_SNP [dm3] 2R_10783260_SNP [dm6]	A	G	1.244e^-6	0.259	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	16036929	3L_16036929_DEL [dm3] 3L_16043829_DEL [dm6]	CGATCC	C	1.583e^-6	0.259	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	1964504	3L_1964504_SNP [dm3] 3L_1964504_SNP [dm6]	T	C	1.647e^-6	0.259	UTR_5_PRIME SCOT UPSTREAM mv INTRON SCOT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18614608	3R_18614608_SNP [dm3] 3R_22788886_SNP [dm6]	C	T	1.656e^-6	0.259	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9808463	2R_9808463_SNP [dm3] 2R_13920958_SNP [dm6]	A	G	2.457e^-6	0.329	INTRON shot
3R	18614634	3R_18614634_SNP [dm3] 3R_22788912_SNP [dm6]	A	G	2.459e^-6	0.329	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26431943	3R_26431943_SNP [dm3] 3R_30606221_SNP [dm6]	C	T	2.920e^-6	0.329	SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
2R	6670704	2R_6670704_SNP [dm3] 2R_10783199_SNP [dm6]	C	T	3.260e^-6	0.329	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	9071079	X_9071079_SNP [dm3] X_9177046_SNP [dm6]	A	G	3.292e^-6	0.329	UTR_3_PRIME mei-P26
3R	18614737	3R_18614737_SNP [dm3] 3R_22789015_SNP [dm6]	C	T	3.422e^-6	0.329	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18614739	3R_18614739_SNP [dm3] 3R_22789017_SNP [dm6]	T	C	3.464e^-6	0.329	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17187913	X_17187913_SNP [dm3] X_17293880_SNP [dm6]	G	T	3.514e^-6	0.329	INTRON CG5445 & 1 other
2L	8985987	2L_8985987_SNP [dm3] 2L_8985987_SNP [dm6]	T	A	3.698e^-6	0.33	UTR_3_PRIME rost
3R	14523040	3R_14523040_INS [dm3] 3R_18697318_INS [dm6]	A	AA	4.829e^-6	0.389	INTERGENIC
3L	18259212	3L_18259212_SNP [dm3] 3L_18266112_SNP [dm6]	T	A	4.932e^-6	0.389	INTERGENIC
2L	8979628	2L_8979628_DEL [dm3] 2L_8979628_DEL [dm6]	ATTTT	A	5.032e^-6	0.389	INTRON CG13101
3R	26431969	3R_26431969_SNP [dm3] 3R_30606247_SNP [dm6]	T	A	5.228e^-6	0.389	NON_SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
3R	14523018	3R_14523018_SNP [dm3] 3R_18697296_SNP [dm6]	A	C	5.961e^-6	0.389	INTERGENIC
3R	26431773	3R_26431773_SNP [dm3] 3R_30606051_SNP [dm6]	C	T	6.217e^-6	0.389	UTR_3_PRIME PH4alphaNE3 UPSTREAM CG31016
2L	8581013	2L_8581013_DEL [dm3] 2L_8581013_DEL [dm6]	ATGGGA	A	6.636e^-6	0.389	INTRON Sema-1a
2R	9431748	2R_9431748_SNP [dm3] 2R_13544243_SNP [dm6]	C	T	6.644e^-6	0.389	INTRON CG6145	TF binding site BDTNP1_TFBS_twi
2L	8937933	2L_8937933_SNP [dm3] 2L_8937933_SNP [dm6]	A	T	6.661e^-6	0.389	INTRON Tsp29Fb	TF binding site BDTNP1_TFBS_dl
2L	8988213	2L_8988213_SNP [dm3] 2L_8988213_SNP [dm6]	T	A	6.975e^-6	0.389	INTRON rost
2L	939874	2L_939874_SNP [dm3] 2L_939874_SNP [dm6]	G	A	7.071e^-6	0.389	INTRON CG4341
2L	8503627	2L_8503627_SNP [dm3] 2L_8503627_SNP [dm6]	A	G	7.414e^-6	0.389	INTRON Dh31
3L	17363427	3L_17363427_SNP [dm3] 3L_17370327_SNP [dm6]	A	G	7.688e^-6	0.389	SYNONYMOUS_CODING Cad74A
X	21341744	X_21341744_DEL [dm3] X_21470717_DEL [dm6]	AA	A	7.828e^-6	0.389	INTERGENIC
3R	18614700	3R_18614700_SNP [dm3] 3R_22788978_SNP [dm6]	A	C	7.887e^-6	0.389	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18614863	3R_18614863_SNP [dm3] 3R_22789141_SNP [dm6]	A	T	8.362e^-6	0.389	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18614646	3R_18614646_SNP [dm3] 3R_22788924_SNP [dm6]	A	C	8.460e^-6	0.389	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18159274	2L_18159274_SNP [dm3] 2L_18159274_SNP [dm6]	A	G	8.468e^-6	0.389	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad transposable element FlyBase
3L	17363309	3L_17363309_SNP [dm3] 3L_17370209_SNP [dm6]	C	T	8.524e^-6	0.389	INTRON Cad74A
3R	7308429	3R_7308429_SNP [dm3] 3R_11482707_SNP [dm6]	A	G	8.774e^-6	0.389	INTERGENIC
X	9205044	X_9205044_DEL [dm3] X_9311011_DEL [dm6]	GAATTCAG	G	9.223e^-6	0.389	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10315443	2R_10315443_SNP [dm3] 2R_14427938_SNP [dm6]	T	C	9.894e^-6	0.389	SYNONYMOUS_CODING phyl	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	8793847	3L_8793847_DEL [dm3] 3L_8800747_DEL [dm6]	TT	T	1.010e^-5	0.389	UPSTREAM CG13310 DOWNSTREAM CG13311 INTERGENIC
3R	26189129	3R_26189129_SNP [dm3] 3R_30363407_SNP [dm6]	A	C	1.012e^-5	0.389	UTR_3_PRIME hdc
2L	16344161	2L_16344161_SNP [dm3] 2L_16344161_SNP [dm6]	T	A	1.035e^-5	0.389	UTR_3_PRIME chif INTRON chif & 1 other
2L	8984181	2L_8984181_SNP [dm3] 2L_8984181_SNP [dm6]	C	T	1.050e^-5	0.389	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26431780	3R_26431780_SNP [dm3] 3R_30606058_SNP [dm6]	T	C	1.053e^-5	0.389	UTR_3_PRIME PH4alphaNE3 UPSTREAM CG31016
2L	8972653	2L_8972653_SNP [dm3] 2L_8972653_SNP [dm6]	T	G	1.106e^-5	0.389	INTRON CG9541
2R	17780442	2R_17780442_INS [dm3] 2R_21892937_INS [dm6]	G	GG	1.113e^-5	0.389	INTRON Fili
3R	8526595	3R_8526595_SNP [dm3] 3R_12700873_SNP [dm6]	G	A	1.116e^-5	0.389	INTRON Past1
2L	16344193	2L_16344193_SNP [dm3] 2L_16344193_SNP [dm6]	T	A	1.123e^-5	0.389	UTR_3_PRIME chif INTRON chif & 1 other	TF binding site mE1_TFBS_cad
2L	8986883	2L_8986883_SNP [dm3] 2L_8986883_SNP [dm6]	C	G	1.125e^-5	0.389	INTRON rost
2L	17161570	2L_17161570_SNP [dm3] 2L_17161570_SNP [dm6]	G	C	1.138e^-5	0.389	INTRON beat-IIIa & 1 other
3L	17363419	3L_17363419_SNP [dm3] 3L_17370319_SNP [dm6]	T	G	1.141e^-5	0.389	SYNONYMOUS_CODING Cad74A
2L	8491708	2L_8491708_DEL [dm3] 2L_8491708_DEL [dm6]	TC	T	1.221e^-5	0.408	DOWNSTREAM Dh31 & 1 other INTERGENIC
2L	7435402	2L_7435402_SNP [dm3] 2L_7435402_SNP [dm6]	T	C	1.288e^-5	0.418	INTERGENIC
2R	8892616	2R_8892616_SNP [dm3] 2R_13005111_SNP [dm6]	C	A	1.295e^-5	0.418	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20214330	X_20214330_SNP [dm3] X_20343303_SNP [dm6]	C	T	1.316e^-5	0.418	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	17104344	2R_17104344_SNP [dm3] 2R_21216839_SNP [dm6]	A	C	1.368e^-5	0.427	NON_SYNONYMOUS_CODING CG15661	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12756148	3R_12756148_SNP [dm3] 3R_16930426_SNP [dm6]	C	G	1.401e^-5	0.428	INTRON Abd-B
3L	5120840	3L_5120840_SNP [dm3] 3L_5127740_SNP [dm6]	T	C	1.447e^-5	0.428	INTERGENIC
3R	25301087	3R_25301087_SNP [dm3] 3R_29475365_SNP [dm6]	T	A	1.451e^-5	0.428	INTRON Ptp99A
2R	20157618	2R_20157618_SNP [dm3] 2R_24270095_SNP [dm6]	C	G	1.461e^-5	0.428	UPSTREAM CG13577 INTERGENIC
3L	1270185	3L_1270185_SNP [dm3] 3L_1270185_SNP [dm6]	T	G	1.534e^-5	0.428	INTRON CG9134
3L	17363081	3L_17363081_SNP [dm3] 3L_17369981_SNP [dm6]	C	T	1.534e^-5	0.428	SYNONYMOUS_CODING Cad74A
X	14279255	X_14279255_SNP [dm3] X_14385222_SNP [dm6]	G	T	1.549e^-5	0.428	INTRON dpr8
X	18024973	X_18024973_SNP [dm3] X_18130940_SNP [dm6]	G	A	1.555e^-5	0.428	UTR_3_PRIME ari-1 UPSTREAM CG43133 DOWNSTREAM ari-1
2R	6670751	2R_6670751_SNP [dm3] 2R_10783246_SNP [dm6]	A	G	1.676e^-5	0.455	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	10318059	2R_10318059_SNP [dm3] 2R_14430554_SNP [dm6]	A	C	1.764e^-5	0.472	INTRON phyl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6671225	2R_6671225_SNP [dm3] 2R_10783720_SNP [dm6]	C	A	1.930e^-5	0.491	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	3591169	2R_3591169_SNP [dm3] 2R_7703664_SNP [dm6]	A	T	1.939e^-5	0.491	UTR_3_PRIME CG34216 DOWNSTREAM CG30493
3L	9142581	3L_9142581_SNP [dm3] 3L_9149481_SNP [dm6]	G	T	1.940e^-5	0.491	UTR_3_PRIME Rdl
2L	17160409	2L_17160409_SNP [dm3] 2L_17160409_SNP [dm6]	G	A	1.951e^-5	0.491	INTRON beat-IIIa & 1 other
3L	12365873	3L_12365873_SNP [dm3] 3L_12372773_SNP [dm6]	G	T	1.975e^-5	0.491	SPLICE_SITE_REGION Ncc69 INTRON Ncc69
2R	2439354	2R_2439354_SNP [dm3] 2R_6551849_SNP [dm6]	A	G	1.992e^-5	0.491	INTRON jing	TF binding site mE1_TFBS_chinmo
2L	18159366	2L_18159366_SNP [dm3] 2L_18159366_SNP [dm6]	A	T	2.156e^-5	0.525	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3R	9283756	3R_9283756_SNP [dm3] 3R_13458034_SNP [dm6]	A	T	2.216e^-5	0.532	INTRON CG14372 EXON CR17025
3R	14195262	3R_14195262_SNP [dm3] 3R_18369540_SNP [dm6]	C	T	2.389e^-5	0.55	SYNONYMOUS_CODING gl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9805653	2R_9805653_SNP [dm3] 2R_13918148_SNP [dm6]	T	C	2.397e^-5	0.55	INTRON shot
3L	10360726	3L_10360726_SNP [dm3] 3L_10367626_SNP [dm6]	A	G	2.420e^-5	0.55	DOWNSTREAM CR44327 INTERGENIC
3L	10614333	3L_10614333_SNP [dm3] 3L_10621233_SNP [dm6]	G	T	2.459e^-5	0.55	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	612011	3L_612011_SNP [dm3] 3L_612011_SNP [dm6]	T	G	2.481e^-5	0.55	INTERGENIC
2L	658858	2L_658858_SNP [dm3] 2L_658858_SNP [dm6]	A	T	2.507e^-5	0.55	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14231743	X_14231743_SNP [dm3] X_14337710_SNP [dm6]	G	C	2.511e^-5	0.55	INTRON dpr8
2L	18156967	2L_18156967_SNP [dm3] 2L_18156967_SNP [dm6]	G	A	2.538e^-5	0.55	NON_SYNONYMOUS_CODING CG5783 DOWNSTREAM CG7200
3R	17333089	3R_17333089_SNP [dm3] 3R_21507367_SNP [dm6]	T	C	2.577e^-5	0.55	SPLICE_SITE_REGION C15 INTRON C15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12235901	3R_12235901_SNP [dm3] 3R_16410179_SNP [dm6]	G	A	2.585e^-5	0.55	INTERGENIC
2L	10355939	2L_10355939_SNP [dm3] 2L_10355939_SNP [dm6]	A	T	2.727e^-5	0.572	UPSTREAM CG5045 INTRON CG5367
3R	23776803	3R_23776803_SNP [dm3] 3R_27951081_SNP [dm6]	T	C	2.756e^-5	0.572	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad
3L	9351670	3L_9351670_SNP [dm3] 3L_9358570_SNP [dm6]	G	C	2.804e^-5	0.572	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16804628	2L_16804628_SNP [dm3] 2L_16804628_SNP [dm6]	T	A	2.809e^-5	0.572	UPSTREAM CG13272 & 1 other INTRON CG13280
2L	8581392	2L_8581392_SNP [dm3] 2L_8581392_SNP [dm6]	G	A	2.876e^-5	0.579	INTRON Sema-1a
3L	14052948	3L_14052948_SNP [dm3] 3L_14059848_SNP [dm6]	A	G	2.905e^-5	0.579	INTRON CG32138
2L	18513841	2L_18513841_DEL [dm3] 2L_18513841_DEL [dm6]	AGTTT	A	3.088e^-5	0.594	DOWNSTREAM CG10178 INTERGENIC
3L	16039074	3L_16039074_INS [dm3] 3L_16045974_INS [dm6]	C	CC	3.134e^-5	0.594	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	2439344	2R_2439344_SNP [dm3] 2R_6551839_SNP [dm6]	A	C	3.191e^-5	0.594	INTRON jing	TF binding site mE1_TFBS_chinmo
3R	25301047	3R_25301047_SNP [dm3] 3R_29475325_SNP [dm6]	C	T	3.218e^-5	0.594	INTRON Ptp99A
2R	4434287	2R_4434287_SNP [dm3] 2R_8546782_SNP [dm6]	T	C	3.234e^-5	0.594	INTERGENIC
2R	6670734	2R_6670734_SNP [dm3] 2R_10783229_SNP [dm6]	G	A	3.274e^-5	0.594	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad

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By genomic position
Variant impact
Gene name

mn_Week7_Fecundity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results