DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.418e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.038573

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1967 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	18259275	3L_18259275_SNP [dm3] 3L_18266175_SNP [dm6]	C	T	4.024e^-8	0.075	INTERGENIC
3L	16036130	3L_16036130_SNP [dm3] 3L_16043030_SNP [dm6]	C	T	3.659e^-7	0.193	UTR_5_PRIME th UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv
2L	21725984	2L_21725984_SNP [dm3] 2L_21725984_SNP [dm6]	G	T	4.101e^-7	0.193	INTRON CG31619
3R	18614546	3R_18614546_SNP [dm3] 3R_22788824_SNP [dm6]	A	G	4.764e^-7	0.193	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17366051	3L_17366051_SNP [dm3] 3L_17372951_SNP [dm6]	T	G	5.294e^-7	0.193	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18614460	3R_18614460_SNP [dm3] 3R_22788738_SNP [dm6]	C	T	6.178e^-7	0.193	NON_SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8982738	2L_8982738_INS [dm3] 2L_8982738_INS [dm6]	T	TT	9.043e^-7	0.24	INTRON CG13101
3R	18614115	3R_18614115_SNP [dm3] 3R_22788393_SNP [dm6]	C	A	1.023e^-6	0.24	SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	6670765	2R_6670765_SNP [dm3] 2R_10783260_SNP [dm6]	A	G	1.244e^-6	0.259	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	16036929	3L_16036929_DEL [dm3] 3L_16043829_DEL [dm6]	CGATCC	C	1.583e^-6	0.259	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	1964504	3L_1964504_SNP [dm3] 3L_1964504_SNP [dm6]	T	C	1.647e^-6	0.259	UTR_5_PRIME SCOT UPSTREAM mv INTRON SCOT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18614608	3R_18614608_SNP [dm3] 3R_22788886_SNP [dm6]	C	T	1.656e^-6	0.259	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9808463	2R_9808463_SNP [dm3] 2R_13920958_SNP [dm6]	A	G	2.457e^-6	0.329	INTRON shot
3R	18614634	3R_18614634_SNP [dm3] 3R_22788912_SNP [dm6]	A	G	2.459e^-6	0.329	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26431943	3R_26431943_SNP [dm3] 3R_30606221_SNP [dm6]	C	T	2.920e^-6	0.329	SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
2R	6670704	2R_6670704_SNP [dm3] 2R_10783199_SNP [dm6]	C	T	3.260e^-6	0.329	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	9071079	X_9071079_SNP [dm3] X_9177046_SNP [dm6]	A	G	3.292e^-6	0.329	UTR_3_PRIME mei-P26
3R	18614737	3R_18614737_SNP [dm3] 3R_22789015_SNP [dm6]	C	T	3.422e^-6	0.329	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18614739	3R_18614739_SNP [dm3] 3R_22789017_SNP [dm6]	T	C	3.464e^-6	0.329	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17187913	X_17187913_SNP [dm3] X_17293880_SNP [dm6]	G	T	3.514e^-6	0.329	INTRON CG5445 & 1 other
2L	8985987	2L_8985987_SNP [dm3] 2L_8985987_SNP [dm6]	T	A	3.698e^-6	0.33	UTR_3_PRIME rost
3R	14523040	3R_14523040_INS [dm3] 3R_18697318_INS [dm6]	A	AA	4.829e^-6	0.389	INTERGENIC
3L	18259212	3L_18259212_SNP [dm3] 3L_18266112_SNP [dm6]	T	A	4.932e^-6	0.389	INTERGENIC
2L	8979628	2L_8979628_DEL [dm3] 2L_8979628_DEL [dm6]	ATTTT	A	5.032e^-6	0.389	INTRON CG13101
3R	26431969	3R_26431969_SNP [dm3] 3R_30606247_SNP [dm6]	T	A	5.228e^-6	0.389	NON_SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
3R	14523018	3R_14523018_SNP [dm3] 3R_18697296_SNP [dm6]	A	C	5.961e^-6	0.389	INTERGENIC
3R	26431773	3R_26431773_SNP [dm3] 3R_30606051_SNP [dm6]	C	T	6.217e^-6	0.389	UTR_3_PRIME PH4alphaNE3 UPSTREAM CG31016
2L	8581013	2L_8581013_DEL [dm3] 2L_8581013_DEL [dm6]	ATGGGA	A	6.636e^-6	0.389	INTRON Sema-1a
2R	9431748	2R_9431748_SNP [dm3] 2R_13544243_SNP [dm6]	C	T	6.644e^-6	0.389	INTRON CG6145	TF binding site BDTNP1_TFBS_twi
2L	8937933	2L_8937933_SNP [dm3] 2L_8937933_SNP [dm6]	A	T	6.661e^-6	0.389	INTRON Tsp29Fb	TF binding site BDTNP1_TFBS_dl
2L	8988213	2L_8988213_SNP [dm3] 2L_8988213_SNP [dm6]	T	A	6.975e^-6	0.389	INTRON rost
2L	939874	2L_939874_SNP [dm3] 2L_939874_SNP [dm6]	G	A	7.071e^-6	0.389	INTRON CG4341
2L	8503627	2L_8503627_SNP [dm3] 2L_8503627_SNP [dm6]	A	G	7.414e^-6	0.389	INTRON Dh31
3L	17363427	3L_17363427_SNP [dm3] 3L_17370327_SNP [dm6]	A	G	7.688e^-6	0.389	SYNONYMOUS_CODING Cad74A
X	21341744	X_21341744_DEL [dm3] X_21470717_DEL [dm6]	AA	A	7.828e^-6	0.389	INTERGENIC
3R	18614700	3R_18614700_SNP [dm3] 3R_22788978_SNP [dm6]	A	C	7.887e^-6	0.389	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18614863	3R_18614863_SNP [dm3] 3R_22789141_SNP [dm6]	A	T	8.362e^-6	0.389	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18614646	3R_18614646_SNP [dm3] 3R_22788924_SNP [dm6]	A	C	8.460e^-6	0.389	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18159274	2L_18159274_SNP [dm3] 2L_18159274_SNP [dm6]	A	G	8.468e^-6	0.389	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad transposable element FlyBase
3L	17363309	3L_17363309_SNP [dm3] 3L_17370209_SNP [dm6]	C	T	8.524e^-6	0.389	INTRON Cad74A
3R	7308429	3R_7308429_SNP [dm3] 3R_11482707_SNP [dm6]	A	G	8.774e^-6	0.389	INTERGENIC
X	9205044	X_9205044_DEL [dm3] X_9311011_DEL [dm6]	GAATTCAG	G	9.223e^-6	0.389	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10315443	2R_10315443_SNP [dm3] 2R_14427938_SNP [dm6]	T	C	9.894e^-6	0.389	SYNONYMOUS_CODING phyl	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	8793847	3L_8793847_DEL [dm3] 3L_8800747_DEL [dm6]	TT	T	1.010e^-5	0.389	UPSTREAM CG13310 DOWNSTREAM CG13311 INTERGENIC
3R	26189129	3R_26189129_SNP [dm3] 3R_30363407_SNP [dm6]	A	C	1.012e^-5	0.389	UTR_3_PRIME hdc
2L	16344161	2L_16344161_SNP [dm3] 2L_16344161_SNP [dm6]	T	A	1.035e^-5	0.389	UTR_3_PRIME chif INTRON chif & 1 other
2L	8984181	2L_8984181_SNP [dm3] 2L_8984181_SNP [dm6]	C	T	1.050e^-5	0.389	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26431780	3R_26431780_SNP [dm3] 3R_30606058_SNP [dm6]	T	C	1.053e^-5	0.389	UTR_3_PRIME PH4alphaNE3 UPSTREAM CG31016
2L	8972653	2L_8972653_SNP [dm3] 2L_8972653_SNP [dm6]	T	G	1.106e^-5	0.389	INTRON CG9541
2R	17780442	2R_17780442_INS [dm3] 2R_21892937_INS [dm6]	G	GG	1.113e^-5	0.389	INTRON Fili
3R	8526595	3R_8526595_SNP [dm3] 3R_12700873_SNP [dm6]	G	A	1.116e^-5	0.389	INTRON Past1
2L	16344193	2L_16344193_SNP [dm3] 2L_16344193_SNP [dm6]	T	A	1.123e^-5	0.389	UTR_3_PRIME chif INTRON chif & 1 other	TF binding site mE1_TFBS_cad
2L	8986883	2L_8986883_SNP [dm3] 2L_8986883_SNP [dm6]	C	G	1.125e^-5	0.389	INTRON rost
2L	17161570	2L_17161570_SNP [dm3] 2L_17161570_SNP [dm6]	G	C	1.138e^-5	0.389	INTRON beat-IIIa & 1 other
3L	17363419	3L_17363419_SNP [dm3] 3L_17370319_SNP [dm6]	T	G	1.141e^-5	0.389	SYNONYMOUS_CODING Cad74A
2L	8491708	2L_8491708_DEL [dm3] 2L_8491708_DEL [dm6]	TC	T	1.221e^-5	0.408	DOWNSTREAM Dh31 & 1 other INTERGENIC
2L	7435402	2L_7435402_SNP [dm3] 2L_7435402_SNP [dm6]	T	C	1.288e^-5	0.418	INTERGENIC
2R	8892616	2R_8892616_SNP [dm3] 2R_13005111_SNP [dm6]	C	A	1.295e^-5	0.418	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20214330	X_20214330_SNP [dm3] X_20343303_SNP [dm6]	C	T	1.316e^-5	0.418	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	17104344	2R_17104344_SNP [dm3] 2R_21216839_SNP [dm6]	A	C	1.368e^-5	0.427	NON_SYNONYMOUS_CODING CG15661	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12756148	3R_12756148_SNP [dm3] 3R_16930426_SNP [dm6]	C	G	1.401e^-5	0.428	INTRON Abd-B
3L	5120840	3L_5120840_SNP [dm3] 3L_5127740_SNP [dm6]	T	C	1.447e^-5	0.428	INTERGENIC
3R	25301087	3R_25301087_SNP [dm3] 3R_29475365_SNP [dm6]	T	A	1.451e^-5	0.428	INTRON Ptp99A
2R	20157618	2R_20157618_SNP [dm3] 2R_24270095_SNP [dm6]	C	G	1.461e^-5	0.428	UPSTREAM CG13577 INTERGENIC
3L	1270185	3L_1270185_SNP [dm3] 3L_1270185_SNP [dm6]	T	G	1.534e^-5	0.428	INTRON CG9134
3L	17363081	3L_17363081_SNP [dm3] 3L_17369981_SNP [dm6]	C	T	1.534e^-5	0.428	SYNONYMOUS_CODING Cad74A
X	14279255	X_14279255_SNP [dm3] X_14385222_SNP [dm6]	G	T	1.549e^-5	0.428	INTRON dpr8
X	18024973	X_18024973_SNP [dm3] X_18130940_SNP [dm6]	G	A	1.555e^-5	0.428	UTR_3_PRIME ari-1 UPSTREAM CG43133 DOWNSTREAM ari-1
2R	6670751	2R_6670751_SNP [dm3] 2R_10783246_SNP [dm6]	A	G	1.676e^-5	0.455	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	10318059	2R_10318059_SNP [dm3] 2R_14430554_SNP [dm6]	A	C	1.764e^-5	0.472	INTRON phyl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6671225	2R_6671225_SNP [dm3] 2R_10783720_SNP [dm6]	C	A	1.930e^-5	0.491	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	3591169	2R_3591169_SNP [dm3] 2R_7703664_SNP [dm6]	A	T	1.939e^-5	0.491	UTR_3_PRIME CG34216 DOWNSTREAM CG30493
3L	9142581	3L_9142581_SNP [dm3] 3L_9149481_SNP [dm6]	G	T	1.940e^-5	0.491	UTR_3_PRIME Rdl
2L	17160409	2L_17160409_SNP [dm3] 2L_17160409_SNP [dm6]	G	A	1.951e^-5	0.491	INTRON beat-IIIa & 1 other
3L	12365873	3L_12365873_SNP [dm3] 3L_12372773_SNP [dm6]	G	T	1.975e^-5	0.491	SPLICE_SITE_REGION Ncc69 INTRON Ncc69
2R	2439354	2R_2439354_SNP [dm3] 2R_6551849_SNP [dm6]	A	G	1.992e^-5	0.491	INTRON jing	TF binding site mE1_TFBS_chinmo
2L	18159366	2L_18159366_SNP [dm3] 2L_18159366_SNP [dm6]	A	T	2.156e^-5	0.525	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3R	9283756	3R_9283756_SNP [dm3] 3R_13458034_SNP [dm6]	A	T	2.216e^-5	0.532	INTRON CG14372 EXON CR17025
3R	14195262	3R_14195262_SNP [dm3] 3R_18369540_SNP [dm6]	C	T	2.389e^-5	0.55	SYNONYMOUS_CODING gl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9805653	2R_9805653_SNP [dm3] 2R_13918148_SNP [dm6]	T	C	2.397e^-5	0.55	INTRON shot
3L	10360726	3L_10360726_SNP [dm3] 3L_10367626_SNP [dm6]	A	G	2.420e^-5	0.55	DOWNSTREAM CR44327 INTERGENIC
3L	10614333	3L_10614333_SNP [dm3] 3L_10621233_SNP [dm6]	G	T	2.459e^-5	0.55	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	612011	3L_612011_SNP [dm3] 3L_612011_SNP [dm6]	T	G	2.481e^-5	0.55	INTERGENIC
2L	658858	2L_658858_SNP [dm3] 2L_658858_SNP [dm6]	A	T	2.507e^-5	0.55	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14231743	X_14231743_SNP [dm3] X_14337710_SNP [dm6]	G	C	2.511e^-5	0.55	INTRON dpr8
2L	18156967	2L_18156967_SNP [dm3] 2L_18156967_SNP [dm6]	G	A	2.538e^-5	0.55	NON_SYNONYMOUS_CODING CG5783 DOWNSTREAM CG7200
3R	17333089	3R_17333089_SNP [dm3] 3R_21507367_SNP [dm6]	T	C	2.577e^-5	0.55	SPLICE_SITE_REGION C15 INTRON C15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12235901	3R_12235901_SNP [dm3] 3R_16410179_SNP [dm6]	G	A	2.585e^-5	0.55	INTERGENIC
2L	10355939	2L_10355939_SNP [dm3] 2L_10355939_SNP [dm6]	A	T	2.727e^-5	0.572	UPSTREAM CG5045 INTRON CG5367
3R	23776803	3R_23776803_SNP [dm3] 3R_27951081_SNP [dm6]	T	C	2.756e^-5	0.572	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad
3L	9351670	3L_9351670_SNP [dm3] 3L_9358570_SNP [dm6]	G	C	2.804e^-5	0.572	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16804628	2L_16804628_SNP [dm3] 2L_16804628_SNP [dm6]	T	A	2.809e^-5	0.572	UPSTREAM CG13272 & 1 other INTRON CG13280
2L	8581392	2L_8581392_SNP [dm3] 2L_8581392_SNP [dm6]	G	A	2.876e^-5	0.579	INTRON Sema-1a
3L	14052948	3L_14052948_SNP [dm3] 3L_14059848_SNP [dm6]	A	G	2.905e^-5	0.579	INTRON CG32138
2L	18513841	2L_18513841_DEL [dm3] 2L_18513841_DEL [dm6]	AGTTT	A	3.088e^-5	0.594	DOWNSTREAM CG10178 INTERGENIC
3L	16039074	3L_16039074_INS [dm3] 3L_16045974_INS [dm6]	C	CC	3.134e^-5	0.594	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	2439344	2R_2439344_SNP [dm3] 2R_6551839_SNP [dm6]	A	C	3.191e^-5	0.594	INTRON jing	TF binding site mE1_TFBS_chinmo
3R	25301047	3R_25301047_SNP [dm3] 3R_29475325_SNP [dm6]	C	T	3.218e^-5	0.594	INTRON Ptp99A
2R	4434287	2R_4434287_SNP [dm3] 2R_8546782_SNP [dm6]	T	C	3.234e^-5	0.594	INTERGENIC
2R	6670734	2R_6670734_SNP [dm3] 2R_10783229_SNP [dm6]	G	A	3.274e^-5	0.594	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	15143125	2L_15143125_SNP [dm3] 2L_15143125_SNP [dm6]	T	G	3.315e^-5	0.594	INTERGENIC
3R	14596752	3R_14596752_SNP [dm3] 3R_18771030_SNP [dm6]	G	A	3.320e^-5	0.594	INTRON CG7720
3L	5386713	3L_5386713_SNP [dm3] 3L_5393613_SNP [dm6]	C	T	3.331e^-5	0.594	INTERGENIC
2L	8968566	2L_8968566_DEL [dm3] 2L_8968566_DEL [dm6]	CG	C	3.404e^-5	0.594	INTRON CG18088
3L	15209110	3L_15209110_SNP [dm3] 3L_15216010_SNP [dm6]	C	A	3.500e^-5	0.594	INTERGENIC
X	4219265	X_4219265_SNP [dm3] X_4325232_SNP [dm6]	G	T	3.541e^-5	0.594	INTRON norpA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16795726	2L_16795726_SNP [dm3] 2L_16795726_SNP [dm6]	C	T	3.575e^-5	0.594	SYNONYMOUS_CODING Ugt36Ba UPSTREAM Ugt36Bb
3L	7814193	3L_7814193_SNP [dm3] 3L_7821093_SNP [dm6]	C	T	3.606e^-5	0.594	INTRON Pdp1
2L	21713744	2L_21713744_SNP [dm3] 2L_21713744_SNP [dm6]	A	T	3.682e^-5	0.594	INTRON CG31619
3L	9628506	3L_9628506_SNP [dm3] 3L_9635406_SNP [dm6]	T	C	3.683e^-5	0.594	INTRON fry
2L	15142433	2L_15142433_SNP [dm3] 2L_15142433_SNP [dm6]	T	C	3.686e^-5	0.594	INTERGENIC
2R	19599431	2R_19599431_SNP [dm3] 2R_23711908_SNP [dm6]	T	A	3.775e^-5	0.594	INTERGENIC
2R	9803617	2R_9803617_DEL [dm3] 2R_13916112_DEL [dm6]	TTTT	T	3.793e^-5	0.594	INTRON shot
2R	17477410	2R_17477410_SNP [dm3] 2R_21589905_SNP [dm6]	G	A	3.822e^-5	0.594	UPSTREAM CG33225 INTERGENIC
2R	6670739	2R_6670739_SNP [dm3] 2R_10783234_SNP [dm6]	C	A	3.835e^-5	0.594	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	10315458	2R_10315458_SNP [dm3] 2R_14427953_SNP [dm6]	G	A	3.836e^-5	0.594	SYNONYMOUS_CODING phyl	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	9351432	3L_9351432_INS [dm3] 3L_9358332_INS [dm6]	C	CTCATGCAA	3.843e^-5	0.594	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8986874	2L_8986874_SNP [dm3] 2L_8986874_SNP [dm6]	G	A	3.883e^-5	0.594	INTRON rost
X	17186119	X_17186119_SNP [dm3] X_17292086_SNP [dm6]	G	C	3.906e^-5	0.594	UPSTREAM Fim INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
3R	26431913	3R_26431913_SNP [dm3] 3R_30606191_SNP [dm6]	A	T	3.936e^-5	0.594	UTR_5_PRIME CG31016 DOWNSTREAM PH4alphaNE3
3L	16036472	3L_16036472_SNP [dm3] 3L_16043372_SNP [dm6]	G	A	3.963e^-5	0.594	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	18513847	2L_18513847_SNP [dm3] 2L_18513847_SNP [dm6]	T	G	3.964e^-5	0.594	DOWNSTREAM CG10178 INTERGENIC
2L	15142410	2L_15142410_SNP [dm3] 2L_15142410_SNP [dm6]	T	C	3.964e^-5	0.594	INTERGENIC
3R	4416302	3R_4416302_SNP [dm3] 3R_8590580_SNP [dm6]	G	C	3.973e^-5	0.594	INTRON 5-HT2B
X	17191637	X_17191637_SNP [dm3] X_17297604_SNP [dm6]	G	A	3.988e^-5	0.594	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4465353	2R_4465353_INS [dm3] 2R_8577848_INS [dm6]	A	TT	3.994e^-5	0.594	INTRON CG42326
X	7897573	X_7897573_SNP [dm3] X_8003540_SNP [dm6]	C	G	4.055e^-5	0.598	INTRON Tbh
3L	5386712	3L_5386712_SNP [dm3] 3L_5393612_SNP [dm6]	G	A	4.088e^-5	0.598	INTERGENIC
3L	6787746	3L_6787746_SNP [dm3] 3L_6794646_SNP [dm6]	A	G	4.217e^-5	0.607	UTR_3_PRIME vvl DOWNSTREAM vvl
2R	19246276	2R_19246276_SNP [dm3] 2R_23358753_SNP [dm6]	T	C	4.234e^-5	0.607	SYNONYMOUS_CODING CG34423 UTR_5_PRIME CG34423 UPSTREAM CG34424 DOWNSTREAM CG9875 EXON CR44168	TF binding site BDTNP1_TFBS_dl
2R	14815290	2R_14815290_SNP [dm3] 2R_18927785_SNP [dm6]	T	A	4.242e^-5	0.607	INTRON sano
2L	8973639	2L_8973639_SNP [dm3] 2L_8973639_SNP [dm6]	A	T	4.378e^-5	0.608	INTRON CG9541
2L	8973642	2L_8973642_SNP [dm3] 2L_8973642_SNP [dm6]	C	T	4.378e^-5	0.608	INTRON CG9541
3L	1964657	3L_1964657_SNP [dm3] 3L_1964657_SNP [dm6]	T	C	4.419e^-5	0.608	UPSTREAM mv INTRON SCOT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14826563	2L_14826563_SNP [dm3] 2L_14826563_SNP [dm6]	A	G	4.431e^-5	0.608	INTERGENIC
X	14459694	X_14459694_SNP [dm3] X_14565661_SNP [dm6]	G	A	4.453e^-5	0.608	INTERGENIC
X	4218721	X_4218721_SNP [dm3] X_4324688_SNP [dm6]	A	C	4.472e^-5	0.608	INTRON norpA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	14483664	X_14483664_SNP [dm3] X_14589631_SNP [dm6]	C	T	4.487e^-5	0.608	INTRON CG9413
X	8789011	X_8789011_INS [dm3] X_8894978_INS [dm6]	A	AA	4.512e^-5	0.608	UPSTREAM Moe INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	5402528	2L_5402528_SNP [dm3] 2L_5402528_SNP [dm6]	C	T	4.610e^-5	0.617	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	22060959	3R_22060959_INS [dm3] 3R_26235237_INS [dm6]	T	TT	4.665e^-5	0.617	UPSTREAM CR42745 DOWNSTREAM CG12290 INTERGENIC
2L	7039459	2L_7039459_SNP [dm3] 2L_7039459_SNP [dm6]	T	C	4.707e^-5	0.617	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11102475	3R_11102475_SNP [dm3] 3R_15276753_SNP [dm6]	G	C	4.708e^-5	0.617	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	4218880	X_4218880_SNP [dm3] X_4324847_SNP [dm6]	C	G	4.776e^-5	0.621	INTRON norpA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	16804592	2L_16804592_SNP [dm3] 2L_16804592_SNP [dm6]	C	T	4.850e^-5	0.627	UPSTREAM CG13272 & 1 other INTRON CG13280
2L	16778306	2L_16778306_SNP [dm3] 2L_16778306_SNP [dm6]	T	G	4.980e^-5	0.63	INTRON Mhc
X	17187957	X_17187957_SNP [dm3] X_17293924_SNP [dm6]	C	T	5.002e^-5	0.63	INTRON CG5445 & 1 other
3L	11997572	3L_11997572_SNP [dm3] 3L_12004472_SNP [dm6]	C	A	5.029e^-5	0.63	UTR_5_PRIME CG6928 INTRON CG6928
3L	17366189	3L_17366189_SNP [dm3] 3L_17373089_SNP [dm6]	T	C	5.038e^-5	0.63	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18344254	2R_18344254_SNP [dm3] 2R_22456749_SNP [dm6]	G	A	5.048e^-5	0.63	INTRON CG10384
2R	6671118	2R_6671118_SNP [dm3] 2R_10783613_SNP [dm6]	A	G	5.193e^-5	0.635	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	5003513	2L_5003513_SNP [dm3] 2L_5003513_SNP [dm6]	C	A	5.220e^-5	0.635	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_run
2R	6717184	2R_6717184_SNP [dm3] 2R_10829679_SNP [dm6]	C	T	5.222e^-5	0.635	SYNONYMOUS_CODING CG12344
3R	26431783	3R_26431783_SNP [dm3] 3R_30606061_SNP [dm6]	A	T	5.256e^-5	0.635	UTR_3_PRIME PH4alphaNE3 UPSTREAM CG31016
3L	2306456	3L_2306456_SNP [dm3] 3L_2306456_SNP [dm6]	G	T	5.289e^-5	0.635	INTERGENIC
2R	9571382	2R_9571382_SNP [dm3] 2R_13683877_SNP [dm6]	T	A	5.290e^-5	0.635	INTRON fas
2L	12750979	2L_12750979_SNP [dm3] 2L_12750979_SNP [dm6]	C	A	5.326e^-5	0.635	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11241959	2R_11241959_SNP [dm3] 2R_15354454_SNP [dm6]	T	C	5.460e^-5	0.638	INTRON unc-5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	17095083	2R_17095083_SNP [dm3] 2R_21207578_SNP [dm6]	T	A	5.460e^-5	0.638	INTRON CG44245 & 1 other
3L	2306455	3L_2306455_SNP [dm3] 3L_2306455_SNP [dm6]	G	T	5.472e^-5	0.638	INTERGENIC
2L	8983416	2L_8983416_SNP [dm3] 2L_8983416_SNP [dm6]	G	C	5.481e^-5	0.638	INTRON CG13101
2L	8962986	2L_8962986_SNP [dm3] 2L_8962986_SNP [dm6]	T	C	5.621e^-5	0.64	UPSTREAM CG9525 INTRON CG32985
2L	15137524	2L_15137524_SNP [dm3] 2L_15137524_SNP [dm6]	G	A	5.655e^-5	0.64	INTERGENIC
3R	8894118	3R_8894118_SNP [dm3] 3R_13068396_SNP [dm6]	G	T	5.662e^-5	0.64	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	5713035	3L_5713035_SNP [dm3] 3L_5719935_SNP [dm6]	T	C	5.680e^-5	0.64	UPSTREAM snoRNA:Me18S-A1494 INTRON sif
3L	5713041	3L_5713041_SNP [dm3] 3L_5719941_SNP [dm6]	T	C	5.680e^-5	0.64	UPSTREAM snoRNA:Me18S-A1494 INTRON sif
2L	16778314	2L_16778314_SNP [dm3] 2L_16778314_SNP [dm6]	T	C	5.719e^-5	0.64	INTRON Mhc
3L	18259194	3L_18259194_SNP [dm3] 3L_18266094_SNP [dm6]	C	T	5.758e^-5	0.64	INTERGENIC
2L	18513837	2L_18513837_INS [dm3] 2L_18513837_INS [dm6]	G	CCC	5.869e^-5	0.64	DOWNSTREAM CG10178 INTERGENIC
2L	13682249	2L_13682249_SNP [dm3] 2L_13682249_SNP [dm6]	G	C	5.980e^-5	0.64	INTRON CG31814
3R	490343	3R_490343_SNP [dm3] 3R_4664621_SNP [dm6]	C	T	5.983e^-5	0.64	INTRON CG43427	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5910269	3L_5910269_SNP [dm3] 3L_5917169_SNP [dm6]	C	G	6.011e^-5	0.64	UTR_3_PRIME CG13288 DOWNSTREAM CG10483
2R	7968195	2R_7968195_SNP [dm3] 2R_12080690_SNP [dm6]	T	A	6.051e^-5	0.64	UPSTREAM CG13186 INTERGENIC	TF binding site mE1_TFBS_inv
2L	19607671	2L_19607671_SNP [dm3] 2L_19607671_SNP [dm6]	C	G	6.095e^-5	0.64	INTRON Lar	TF binding site BDTNP1_TFBS_da
3L	1332276	3L_1332276_DEL [dm3] 3L_1332276_DEL [dm6]	TATT	T	6.098e^-5	0.64	UTR_3_PRIME msd1 DOWNSTREAM msd5 & 2 others
4	1034728	4_1034728_SNP [dm3] 4_1014102_SNP [dm6]	G	A	6.102e^-5	0.64	INTRON PlexA
X	5850193	X_5850193_SNP [dm3] X_5956160_SNP [dm6]	C	T	6.109e^-5	0.64	INTRON CG6067
2L	8962490	2L_8962490_SNP [dm3] 2L_8962490_SNP [dm6]	G	T	6.110e^-5	0.64	UPSTREAM CG32985 & 1 other INTERGENIC
2L	8973558	2L_8973558_DEL [dm3] 2L_8973558_DEL [dm6]	ATTTTAAATTTA...	A	6.120e^-5	0.64	INTRON CG9541
3L	1550459	3L_1550459_SNP [dm3] 3L_1550459_SNP [dm6]	C	T	6.150e^-5	0.64	INTRON Cct1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	18259729	3L_18259729_SNP [dm3] 3L_18266629_SNP [dm6]	C	T	6.179e^-5	0.64	INTERGENIC
X	8056575	X_8056575_SNP [dm3] X_8162542_SNP [dm6]	C	A	6.217e^-5	0.64	SYNONYMOUS_CODING CG10761 UPSTREAM CR45536 DOWNSTREAM CG15337	TF binding site mE1_TFBS_chinmo
3R	14296544	3R_14296544_SNP [dm3] 3R_18470822_SNP [dm6]	T	C	6.291e^-5	0.64	INTRON fru
3L	3882206	3L_3882206_SNP [dm3] 3L_3882206_SNP [dm6]	T	G	6.358e^-5	0.64	INTERGENIC
3L	3882242	3L_3882242_SNP [dm3] 3L_3882242_SNP [dm6]	C	G	6.358e^-5	0.64	INTERGENIC
3L	3882243	3L_3882243_SNP [dm3] 3L_3882243_SNP [dm6]	A	C	6.358e^-5	0.64	INTERGENIC
X	4218780	X_4218780_SNP [dm3] X_4324747_SNP [dm6]	C	G	6.515e^-5	0.642	INTRON norpA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	5331139	X_5331139_SNP [dm3] X_5437106_SNP [dm6]	G	A	6.569e^-5	0.642	INTERGENIC
2L	8981631	2L_8981631_SNP [dm3] 2L_8981631_SNP [dm6]	A	G	6.571e^-5	0.642	DOWNSTREAM CG18662 INTRON CG13101
3L	1550458	3L_1550458_SNP [dm3] 3L_1550458_SNP [dm6]	G	A	6.602e^-5	0.642	INTRON Cct1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19593327	2R_19593327_SNP [dm3] 2R_23705804_SNP [dm6]	G	A	6.603e^-5	0.642	SYNONYMOUS_CODING l_2_not DOWNSTREAM l_2_dtl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5238322	3L_5238322_SNP [dm3] 3L_5245222_SNP [dm6]	A	G	6.624e^-5	0.642	INTRON shep
2L	18513810	2L_18513810_SNP [dm3] 2L_18513810_SNP [dm6]	A	C	6.630e^-5	0.642	DOWNSTREAM CG10178 INTERGENIC
3L	10614191	3L_10614191_SNP [dm3] 3L_10621091_SNP [dm6]	G	A	6.707e^-5	0.642	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	20600464	3R_20600464_SNP [dm3] 3R_24774742_SNP [dm6]	A	C	6.713e^-5	0.642	INTRON CG42331
X	14062266	X_14062266_SNP [dm3] X_14168233_SNP [dm6]	T	A	6.759e^-5	0.642	INTERGENIC
3L	21754021	3L_21754021_SNP [dm3] 3L_21760921_SNP [dm6]	C	A	6.803e^-5	0.642	INTRON Syn1
3L	5133493	3L_5133493_SNP [dm3] 3L_5140393_SNP [dm6]	G	C	6.915e^-5	0.642	UTR_3_PRIME CHMP2B UPSTREAM Prpk DOWNSTREAM CG10672	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26431915	3R_26431915_SNP [dm3] 3R_30606193_SNP [dm6]	C	T	6.937e^-5	0.642	UTR_5_PRIME CG31016 DOWNSTREAM PH4alphaNE3
2R	6658521	2R_6658521_SNP [dm3] 2R_10771016_SNP [dm6]	G	A	6.944e^-5	0.642	INTRON CG33144
3R	11916001	3R_11916001_SNP [dm3] 3R_16090279_SNP [dm6]	G	A	7.010e^-5	0.642	INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11363964	3L_11363964_SNP [dm3] 3L_11370864_SNP [dm6]	C	T	7.016e^-5	0.642	INTERGENIC
2R	14651109	2R_14651109_SNP [dm3] 2R_18763604_SNP [dm6]	T	C	7.021e^-5	0.642	INTRON Mctp
2R	17941298	2R_17941298_SNP [dm3] 2R_22053793_SNP [dm6]	T	A	7.021e^-5	0.642	INTERGENIC
2L	21914397	2L_21914397_SNP [dm3] 2L_21914397_SNP [dm6]	T	C	7.105e^-5	0.642	UTR_3_PRIME CG31600
3R	10187299	3R_10187299_SNP [dm3] 3R_14361577_SNP [dm6]	A	G	7.178e^-5	0.642	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	13116473	2R_13116473_SNP [dm3] 2R_17228968_SNP [dm6]	C	T	7.221e^-5	0.642	INTRON mbl
3L	1550412	3L_1550412_SNP [dm3] 3L_1550412_SNP [dm6]	G	A	7.233e^-5	0.642	INTRON Cct1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	1578328	2R_1578328_SNP [dm3] 2R_5690823_SNP [dm6]	G	A	7.273e^-5	0.642	UTR_5_PRIME scaf INTRON scaf	TF binding site BDTNP1_TFBS_dl
2L	21077223	2L_21077223_SNP [dm3] 2L_21077223_SNP [dm6]	C	T	7.274e^-5	0.642	INTRON tadr
2R	4469279	2R_4469279_SNP [dm3] 2R_8581774_SNP [dm6]	G	A	7.295e^-5	0.642	SYNONYMOUS_CODING CG42326	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8796120	3L_8796120_SNP [dm3] 3L_8803020_SNP [dm6]	C	T	7.298e^-5	0.642	NON_SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023	TF binding site mE1_TFBS_sens
3L	8796141	3L_8796141_SNP [dm3] 3L_8803041_SNP [dm6]	C	T	7.298e^-5	0.642	NON_SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023
2L	13682252	2L_13682252_SNP [dm3] 2L_13682252_SNP [dm6]	A	G	7.351e^-5	0.644	INTRON CG31814
2L	12760200	2L_12760200_SNP [dm3] 2L_12760200_SNP [dm6]	C	A	7.460e^-5	0.647	DOWNSTREAM CG15483 INTERGENIC
2R	4391234	2R_4391234_SNP [dm3] 2R_8503729_SNP [dm6]	C	T	7.472e^-5	0.647	INTRON mtt
3R	16829486	3R_16829486_SNP [dm3] 3R_21003764_SNP [dm6]	A	C	7.503e^-5	0.647	INTRON Calx
2L	18513832	2L_18513832_SNP [dm3] 2L_18513832_SNP [dm6]	A	G	7.563e^-5	0.647	DOWNSTREAM CG10178 INTERGENIC
X	3258877	X_3258877_SNP [dm3] X_3364844_SNP [dm6]	G	A	7.632e^-5	0.647	INTERGENIC
2L	12758490	2L_12758490_SNP [dm3] 2L_12758490_SNP [dm6]	T	C	7.633e^-5	0.647	INTERGENIC
3R	27237993	3R_27237993_SNP [dm3] 3R_31412271_SNP [dm6]	A	C	7.637e^-5	0.647	INTRON Gprk2	TF binding site mE1_TFBS_cad
3R	22070716	3R_22070716_SNP [dm3] 3R_26244994_SNP [dm6]	G	A	7.742e^-5	0.65	INTRON CR42745
X	10447721	X_10447721_SNP [dm3] X_10553688_SNP [dm6]	C	T	7.771e^-5	0.65	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	13418984	3R_13418984_SNP [dm3] 3R_17593262_SNP [dm6]	T	C	7.790e^-5	0.65	INTERGENIC
3L	10424319	3L_10424319_SNP [dm3] 3L_10431219_SNP [dm6]	G	C	7.842e^-5	0.65	NON_SYNONYMOUS_CODING Ir67b
3L	11879476	3L_11879476_SNP [dm3] 3L_11886376_SNP [dm6]	A	T	7.871e^-5	0.65	DOWNSTREAM CG5897 INTRON CG44837
X	16956582	X_16956582_SNP [dm3] X_17062549_SNP [dm6]	G	A	7.872e^-5	0.65	INTRON CG45002
X	491655	X_491655_DEL [dm3] X_597622_DEL [dm6]	ATTTGCATAA	A	8.006e^-5	0.653	UTR_3_PRIME vnd INTRON CG13366
2L	14301848	2L_14301848_SNP [dm3] 2L_14301848_SNP [dm6]	A	G	8.013e^-5	0.653	INTRON wb
2L	16888023	2L_16888023_SNP [dm3] 2L_16888023_SNP [dm6]	T	A	8.041e^-5	0.653	UPSTREAM tweek & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
2R	7486016	2R_7486016_SNP [dm3] 2R_11598511_SNP [dm6]	G	A	8.047e^-5	0.653	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
3R	1790810	3R_1790810_SNP [dm3] 3R_5965088_SNP [dm6]	T	C	8.190e^-5	0.661	UPSTREAM CR44925 INTERGENIC
2L	17236400	2L_17236400_SNP [dm3] 2L_17236400_SNP [dm6]	G	C	8.266e^-5	0.662	INTRON beat-IIIc
2L	10355914	2L_10355914_SNP [dm3] 2L_10355914_SNP [dm6]	G	A	8.301e^-5	0.662	UPSTREAM CG5045 INTRON CG5367
2L	18100430	2L_18100430_SNP [dm3] 2L_18100430_SNP [dm6]	T	A	8.302e^-5	0.662	INTERGENIC
2R	6717287	2R_6717287_SNP [dm3] 2R_10829782_SNP [dm6]	T	C	8.405e^-5	0.665	INTRON CG12344
X	17396351	X_17396351_SNP [dm3] X_17502318_SNP [dm6]	G	T	8.417e^-5	0.665	INTRON CG43658
2R	10640838	2R_10640838_SNP [dm3] 2R_14753333_SNP [dm6]	G	T	8.485e^-5	0.665	UPSTREAM Rpn6 DOWNSTREAM CG10151 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	18627804	3R_18627804_SNP [dm3] 3R_22802082_SNP [dm6]	A	G	8.494e^-5	0.665	INTERGENIC
2L	7039402	2L_7039402_SNP [dm3] 2L_7039402_SNP [dm6]	A	C	8.546e^-5	0.665	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5850011	X_5850011_SNP [dm3] X_5955978_SNP [dm6]	C	A	8.584e^-5	0.665	INTRON CG6067
2L	16841704	2L_16841704_SNP [dm3] 2L_16841704_SNP [dm6]	C	T	8.593e^-5	0.665	UTR_3_PRIME SclA & 1 other DOWNSTREAM CG13284
2L	5974992	2L_5974992_SNP [dm3] 2L_5974992_SNP [dm6]	A	C	8.708e^-5	0.669	INTRON chic
3R	26429928	3R_26429928_SNP [dm3] 3R_30604206_SNP [dm6]	A	G	8.712e^-5	0.669	NON_SYNONYMOUS_CODING PH4alphaNE3 DOWNSTREAM CG31021
3R	23776584	3R_23776584_SNP [dm3] 3R_27950862_SNP [dm6]	C	T	8.744e^-5	0.669	INTRON Gp93	TF binding site mE1_TFBS_cad
2R	18778070	2R_18778070_SNP [dm3] 2R_22890547_SNP [dm6]	T	G	8.866e^-5	0.673	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
2L	12751274	2L_12751274_SNP [dm3] 2L_12751274_SNP [dm6]	G	T	8.934e^-5	0.673	INTERGENIC
2L	17159710	2L_17159710_SNP [dm3] 2L_17159710_SNP [dm6]	C	T	8.935e^-5	0.673	INTRON beat-IIIa & 1 other
3R	17689914	3R_17689914_SNP [dm3] 3R_21864192_SNP [dm6]	A	T	8.946e^-5	0.673	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5852383	X_5852383_SNP [dm3] X_5958350_SNP [dm6]	C	G	8.985e^-5	0.673	SYNONYMOUS_CODING fs_1_M3 DOWNSTREAM CG6067
2R	18274755	2R_18274755_DEL [dm3] 2R_22387250_DEL [dm6]	TTACA	G	9.089e^-5	0.676	UPSTREAM CR44757 INTRON CG13506
2R	18274777	2R_18274777_SNP [dm3] 2R_22387272_SNP [dm6]	T	C	9.089e^-5	0.676	UPSTREAM CR44757 INTRON CG13506
X	14277766	X_14277766_SNP [dm3] X_14383733_SNP [dm6]	C	T	9.144e^-5	0.677	INTRON dpr8
2L	8961309	2L_8961309_SNP [dm3] 2L_8961309_SNP [dm6]	T	C	9.280e^-5	0.684	NON_SYNONYMOUS_CODING CG9525	TF binding site mE1_TFBS_HSA
2L	14250721	2L_14250721_SNP [dm3] 2L_14250721_SNP [dm6]	T	C	9.332e^-5	0.686	INTERGENIC
2L	8945997	2L_8945997_DEL [dm3] 2L_8945997_DEL [dm6]	GG	G	9.423e^-5	0.69	INTRON C1GalTA
3L	17366240	3L_17366240_SNP [dm3] 3L_17373140_SNP [dm6]	G	A	9.574e^-5	0.698	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18259223	3L_18259223_SNP [dm3] 3L_18266123_SNP [dm6]	G	C	9.668e^-5	0.702	INTERGENIC
2L	8979640	2L_8979640_SNP [dm3] 2L_8979640_SNP [dm6]	A	G	9.748e^-5	0.705	INTRON CG13101
3R	7406958	3R_7406958_SNP [dm3] 3R_11581236_SNP [dm6]	C	A	9.843e^-5	0.709	NON_SYNONYMOUS_CODING CG5342 UPSTREAM wkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16364715	2L_16364715_SNP [dm3] 2L_16364715_SNP [dm6]	C	G	9.890e^-5	0.709	INTERGENIC	regulatory region REDfly_CRMs
2L	17101787	2L_17101787_SNP [dm3] 2L_17101787_SNP [dm6]	C	T	9.922e^-5	0.709	INTERGENIC
2L	16482857	2L_16482857_MNP [dm3] 2L_16482857_MNP [dm6]	TGC	ATT	1.004e^-4	0.71	INTRON dac	regulatory region REDfly_CRMs
X	19749510	X_19749510_SNP [dm3] X_19855477_SNP [dm6]	T	C	1.005e^-4	0.71	SYNONYMOUS_CODING Nup205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6201087	X_6201087_SNP [dm3] X_6307054_SNP [dm6]	A	T	1.006e^-4	0.71	DOWNSTREAM CG3823 INTERGENIC
X	16956583	X_16956583_SNP [dm3] X_17062550_SNP [dm6]	T	A	1.008e^-4	0.71	INTRON CG45002
3L	1675736	3L_1675736_SNP [dm3] 3L_1675736_SNP [dm6]	C	A	1.016e^-4	0.713	INTRON CG7991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10246164	2L_10246164_SNP [dm3] 2L_10246164_SNP [dm6]	T	C	1.019e^-4	0.713	DOWNSTREAM CR44995 INTRON chico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18737914	3R_18737914_SNP [dm3] 3R_22912192_SNP [dm6]	C	T	1.026e^-4	0.714	INTRON klg
X	14270624	X_14270624_SNP [dm3] X_14376591_SNP [dm6]	T	C	1.042e^-4	0.723	INTRON dpr8
3R	26189083	3R_26189083_SNP [dm3] 3R_30363361_SNP [dm6]	A	C	1.057e^-4	0.73	UTR_3_PRIME hdc
X	19749558	X_19749558_SNP [dm3] X_19855525_SNP [dm6]	T	C	1.064e^-4	0.73	SYNONYMOUS_CODING Nup205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7033699	2L_7033699_SNP [dm3] 2L_7033699_SNP [dm6]	G	T	1.064e^-4	0.73	INTRON CG11266	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	21943586	2L_21943586_SNP [dm3] 2L_21943586_SNP [dm6]	C	A	1.077e^-4	0.736	INTERGENIC
3L	5910299	3L_5910299_SNP [dm3] 3L_5917199_SNP [dm6]	T	C	1.084e^-4	0.738	UTR_3_PRIME CG13288 DOWNSTREAM CG10483
3R	18613958	3R_18613958_DEL [dm3] 3R_22788236_DEL [dm6]	AACAACAACAGCA...	A	1.087e^-4	0.738		TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8054541	X_8054541_SNP [dm3] X_8160508_SNP [dm6]	G	A	1.093e^-4	0.739	SYNONYMOUS_CODING CG15337	TF binding site mE1_TFBS_chinmo
3R	8892947	3R_8892947_SNP [dm3] 3R_13067225_SNP [dm6]	A	C	1.103e^-4	0.739	INTRON sim	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9810106	2R_9810106_SNP [dm3] 2R_13922601_SNP [dm6]	T	A	1.104e^-4	0.739	INTRON shot
2R	11784079	2R_11784079_DEL [dm3] 2R_15896574_DEL [dm6]	CGGTGATC	C	1.105e^-4	0.739	UPSTREAM CG33463 INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10360567	3L_10360567_DEL [dm3] 3L_10367467_DEL [dm6]	AAGCATAATTA...	A	1.109e^-4	0.739	DOWNSTREAM CR44327 INTERGENIC
3L	20887116	3L_20887116_SNP [dm3] 3L_20894016_SNP [dm6]	C	T	1.138e^-4	0.747	INTERGENIC
X	4315485	X_4315485_SNP [dm3] X_4421452_SNP [dm6]	T	C	1.138e^-4	0.747	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	17393414	2R_17393414_SNP [dm3] 2R_21505909_SNP [dm6]	G	A	1.145e^-4	0.747	UPSTREAM MESK2 INTRON MESK2
2L	16896312	2L_16896312_SNP [dm3] 2L_16896312_SNP [dm6]	C	T	1.145e^-4	0.747	SYNONYMOUS_CODING tweek
3L	1965416	3L_1965416_SNP [dm3] 3L_1965416_SNP [dm6]	T	C	1.149e^-4	0.747	SYNONYMOUS_CODING SCOT	TF binding site mE1_TFBS_chinmo
3L	6507074	3L_6507074_SNP [dm3] 3L_6513974_SNP [dm6]	G	A	1.159e^-4	0.747	INTRON sfl
2L	7692895	2L_7692895_SNP [dm3] 2L_7692895_SNP [dm6]	T	A	1.161e^-4	0.747	UPSTREAM CG43235 & 1 other DOWNSTREAM Tep2 INTERGENIC
2L	548546	2L_548546_SNP [dm3] 2L_548546_SNP [dm6]	G	A	1.161e^-4	0.747	INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	2920682	X_2920682_SNP [dm3] X_3026649_SNP [dm6]	C	T	1.166e^-4	0.747	INTRON kirre	TF binding site BDTNP1_TFBS_dl
2L	16795398	2L_16795398_SNP [dm3] 2L_16795398_SNP [dm6]	G	C	1.168e^-4	0.747	NON_SYNONYMOUS_CODING Ugt36Ba
2L	7679791	2L_7679791_SNP [dm3] 2L_7679791_SNP [dm6]	G	A	1.172e^-4	0.747	INTRON Myo28B1
2R	6671287	2R_6671287_SNP [dm3] 2R_10783782_SNP [dm6]	G	T	1.179e^-4	0.747	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	3258843	X_3258843_SNP [dm3] X_3364810_SNP [dm6]	A	T	1.182e^-4	0.747	INTERGENIC
2L	18891571	2L_18891571_SNP [dm3] 2L_18891571_SNP [dm6]	A	T	1.191e^-4	0.747	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8973539	2L_8973539_DEL [dm3] 2L_8973539_DEL [dm6]	AATTATAT	A	1.197e^-4	0.747	SPLICE_SITE_REGION CG9541 INTRON CG9541
3R	14604383	3R_14604383_SNP [dm3] 3R_18778661_SNP [dm6]	T	G	1.206e^-4	0.747	INTRON CG7720
3R	26431939	3R_26431939_SNP [dm3] 3R_30606217_SNP [dm6]	C	T	1.208e^-4	0.747	NON_SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
2R	17941277	2R_17941277_SNP [dm3] 2R_22053772_SNP [dm6]	G	A	1.208e^-4	0.747	INTERGENIC
2L	16795206	2L_16795206_SNP [dm3] 2L_16795206_SNP [dm6]	A	G	1.213e^-4	0.747	NON_SYNONYMOUS_CODING Ugt36Ba
X	9686401	X_9686401_SNP [dm3] X_9792368_SNP [dm6]	T	A	1.217e^-4	0.747	INTRON CG32698
3L	13578054	3L_13578054_SNP [dm3] 3L_13584954_SNP [dm6]	G	A	1.221e^-4	0.747	INTRON bru-3
2R	14559859	2R_14559859_SNP [dm3] 2R_18672354_SNP [dm6]	A	G	1.224e^-4	0.747	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7915716	X_7915716_SNP [dm3] X_8021683_SNP [dm6]	T	C	1.227e^-4	0.747	UPSTREAM CG15333 INTRON Tbh
3L	5910295	3L_5910295_SNP [dm3] 3L_5917195_SNP [dm6]	C	T	1.229e^-4	0.747	UTR_3_PRIME CG13288 DOWNSTREAM CG10483
3L	5910302	3L_5910302_MNP [dm3] 3L_5917202_MNP [dm6]	TTT	AAC	1.229e^-4	0.747	UTR_3_PRIME CG13288 DOWNSTREAM CG10483
3R	17671148	3R_17671148_SNP [dm3] 3R_21845426_SNP [dm6]	A	G	1.235e^-4	0.747	UPSTREAM CR44087 & 1 other DOWNSTREAM Gr93d INTERGENIC
2R	15107370	2R_15107370_SNP [dm3] 2R_19219865_SNP [dm6]	C	T	1.238e^-4	0.747	INTRON hppy
X	17209532	X_17209532_SNP [dm3] X_17315499_SNP [dm6]	T	C	1.240e^-4	0.747	SYNONYMOUS_CODING B-H2 UTR_5_PRIME B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10232345	2R_10232345_SNP [dm3] 2R_14344840_SNP [dm6]	G	T	1.240e^-4	0.747	INTRON Shroom
3R	8881773	3R_8881773_SNP [dm3] 3R_13056051_SNP [dm6]	C	T	1.241e^-4	0.747	SYNONYMOUS_CODING pic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9805724	2R_9805724_SNP [dm3] 2R_13918219_SNP [dm6]	G	A	1.245e^-4	0.747	INTRON shot
2R	13507988	2R_13507988_DEL [dm3] 2R_17620483_DEL [dm6]	TT	A	1.267e^-4	0.758	INTRON CG10936
3L	20764818	3L_20764818_SNP [dm3] 3L_20771718_SNP [dm6]	A	G	1.270e^-4	0.758	UTR_5_PRIME Pitslre UPSTREAM CG4042	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	16956584	X_16956584_INS [dm3] X_17062551_INS [dm6]	T	TAAT	1.277e^-4	0.76	INTRON CG45002
X	16957785	X_16957785_SNP [dm3] X_17063752_SNP [dm6]	G	A	1.284e^-4	0.761	INTRON CG45002
X	12719128	X_12719128_SNP [dm3] X_12825095_SNP [dm6]	A	C	1.287e^-4	0.761	INTRON Pde9
X	10746372	X_10746372_SNP [dm3] X_10852339_SNP [dm6]	T	G	1.296e^-4	0.762	DOWNSTREAM feo & 1 other INTERGENIC
2R	6735997	2R_6735997_SNP [dm3] 2R_10848492_SNP [dm6]	A	G	1.299e^-4	0.762	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad
3L	1021614	3L_1021614_SNP [dm3] 3L_1021614_SNP [dm6]	C	A	1.301e^-4	0.762	INTRON trio
2L	14301858	2L_14301858_SNP [dm3] 2L_14301858_SNP [dm6]	A	G	1.313e^-4	0.763	INTRON wb
3L	15630095	3L_15630095_SNP [dm3] 3L_15636995_SNP [dm6]	T	G	1.321e^-4	0.763	INTRON comm3	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	19602221	2R_19602221_SNP [dm3] 2R_23714698_SNP [dm6]	G	A	1.321e^-4	0.763	UTR_5_PRIME Sesn
3R	18614697	3R_18614697_SNP [dm3] 3R_22788975_SNP [dm6]	A	C	1.322e^-4	0.763	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7085193	2L_7085193_SNP [dm3] 2L_7085193_SNP [dm6]	G	A	1.330e^-4	0.763	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26431895	3R_26431895_SNP [dm3] 3R_30606173_SNP [dm6]	A	C	1.337e^-4	0.763	UPSTREAM CG31016 DOWNSTREAM PH4alphaNE3 INTERGENIC
2R	10231536	2R_10231536_SNP [dm3] 2R_14344031_SNP [dm6]	A	G	1.338e^-4	0.763	INTRON Shroom
3R	12338641	3R_12338641_SNP [dm3] 3R_16512919_SNP [dm6]	C	A	1.338e^-4	0.763	INTRON CG42342
2R	6442384	2R_6442384_DEL [dm3] 2R_10554879_DEL [dm6]	AGAAAA	TT	1.340e^-4	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	14194091	3R_14194091_SNP [dm3] 3R_18368369_SNP [dm6]	C	A	1.348e^-4	0.766	UTR_3_PRIME gl DOWNSTREAM Nup43
X	5925033	X_5925033_SNP [dm3] X_6031000_SNP [dm6]	G	T	1.353e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	9435417	2R_9435417_SNP [dm3] 2R_13547912_SNP [dm6]	T	C	1.368e^-4	0.772	UPSTREAM CG6145 DOWNSTREAM CG33156 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12822353	3L_12822353_SNP [dm3] 3L_12829253_SNP [dm6]	G	A	1.375e^-4	0.772	INTRON CG10960
2L	12767559	2L_12767559_SNP [dm3] 2L_12767559_SNP [dm6]	A	C	1.377e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	2318018	3R_2318018_SNP [dm3] 3R_6492296_SNP [dm6]	G	A	1.381e^-4	0.772	INTRON CG15186	TF binding site mE1_TFBS_cad
3L	17363866	3L_17363866_SNP [dm3] 3L_17370766_SNP [dm6]	C	T	1.396e^-4	0.778	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5848120	X_5848120_SNP [dm3] X_5954087_SNP [dm6]	A	T	1.408e^-4	0.78	DOWNSTREAM CG6048 INTERGENIC
2R	17110861	2R_17110861_DEL [dm3] 2R_21223356_DEL [dm6]	GAGTGTATG	G	1.409e^-4	0.78	INTRON ASPP
2R	16759910	2R_16759910_INS [dm3] 2R_20872405_INS [dm6]	T	TGCCCTTT	1.414e^-4	0.78	INTRON Ipk1
3L	11891420	3L_11891420_SNP [dm3] 3L_11898320_SNP [dm6]	G	C	1.426e^-4	0.78	UPSTREAM CR43624 INTRON CG44837
3L	3596858	3L_3596858_SNP [dm3] 3L_3596858_SNP [dm6]	T	A	1.428e^-4	0.78	INTRON Eip63E
2R	8970242	2R_8970242_INS [dm3] 2R_13082737_INS [dm6]	T	TT	1.450e^-4	0.78	INTERGENIC
3L	612022	3L_612022_SNP [dm3] 3L_612022_SNP [dm6]	G	T	1.451e^-4	0.78	INTERGENIC
X	14277652	X_14277652_SNP [dm3] X_14383619_SNP [dm6]	T	A	1.451e^-4	0.78	INTRON dpr8	TF binding site mE1_TFBS_HSA
X	5691127	X_5691127_SNP [dm3] X_5797094_SNP [dm6]	G	A	1.452e^-4	0.78	INTERGENIC
3L	6506233	3L_6506233_DEL [dm3] 3L_6513133_DEL [dm6]	AA	A	1.455e^-4	0.78	INTRON sfl
2L	12767553	2L_12767553_SNP [dm3] 2L_12767553_SNP [dm6]	A	T	1.456e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	22984553	3R_22984553_SNP [dm3] 3R_27158831_SNP [dm6]	T	C	1.459e^-4	0.78	SYNONYMOUS_CODING grass	TF binding site mE1_TFBS_cad
X	3258811	X_3258811_SNP [dm3] X_3364778_SNP [dm6]	T	A	1.462e^-4	0.78	INTERGENIC
3L	7876156	3L_7876156_INS [dm3] 3L_7883056_INS [dm6]	G	GG	1.466e^-4	0.78	INTRON CG32365
2L	6506797	2L_6506797_SNP [dm3] 2L_6506797_SNP [dm6]	T	G	1.468e^-4	0.78	DOWNSTREAM CR44775 INTRON CG31637
2L	8563327	2L_8563327_SNP [dm3] 2L_8563327_SNP [dm6]	T	A	1.475e^-4	0.78	INTRON Sema-1a
2L	10149051	2L_10149051_SNP [dm3] 2L_10149051_SNP [dm6]	G	A	1.476e^-4	0.78	INTRON CG44153 & 1 other
2R	10318193	2R_10318193_SNP [dm3] 2R_14430688_SNP [dm6]	A	G	1.477e^-4	0.78	INTRON phyl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10856473	3R_10856473_SNP [dm3] 3R_15030751_SNP [dm6]	A	G	1.480e^-4	0.78	INTERGENIC
2L	16792946	2L_16792946_SNP [dm3] 2L_16792946_SNP [dm6]	G	A	1.482e^-4	0.78	NON_SYNONYMOUS_CODING CG17928
3R	18614767	3R_18614767_SNP [dm3] 3R_22789045_SNP [dm6]	G	C	1.486e^-4	0.78	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7713051	2L_7713051_SNP [dm3] 2L_7713051_SNP [dm6]	C	T	1.491e^-4	0.78	DOWNSTREAM CG33296 INTRON Ntl
3R	27185968	3R_27185968_SNP [dm3] 3R_31360246_SNP [dm6]	A	C	1.498e^-4	0.781	INTRON CG34347
X	21350381	X_21350381_SNP [dm3] X_21479354_SNP [dm6]	T	C	1.501e^-4	0.781	UPSTREAM Ir20a DOWNSTREAM CR45509 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17941195	2R_17941195_SNP [dm3] 2R_22053690_SNP [dm6]	G	A	1.507e^-4	0.782	INTERGENIC
2R	10317988	2R_10317988_SNP [dm3] 2R_14430483_SNP [dm6]	T	A	1.515e^-4	0.783	INTRON phyl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10343053	2R_10343053_SNP [dm3] 2R_14455548_SNP [dm6]	G	T	1.517e^-4	0.783	INTRON Oaz	TF binding site BDTNP1_TFBS_twi
2R	17941186	2R_17941186_SNP [dm3] 2R_22053681_SNP [dm6]	C	T	1.529e^-4	0.783	INTERGENIC
X	2925636	X_2925636_SNP [dm3] X_3031603_SNP [dm6]	G	A	1.536e^-4	0.783	INTRON kirre
3L	8873846	3L_8873846_SNP [dm3] 3L_8880746_SNP [dm6]	T	A	1.540e^-4	0.783	INTRON dally
2L	15142901	2L_15142901_SNP [dm3] 2L_15142901_SNP [dm6]	G	T	1.542e^-4	0.783	INTERGENIC
2L	15141049	2L_15141049_SNP [dm3] 2L_15141049_SNP [dm6]	A	T	1.543e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	16036180	3L_16036180_SNP [dm3] 3L_16043080_SNP [dm6]	A	G	1.547e^-4	0.783	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv
2R	9267603	2R_9267603_SNP [dm3] 2R_13380098_SNP [dm6]	G	A	1.552e^-4	0.783	INTERGENIC
3L	14054803	3L_14054803_SNP [dm3] 3L_14061703_SNP [dm6]	C	T	1.557e^-4	0.783	INTRON CG32138
3R	26492485	3R_26492485_SNP [dm3] 3R_30666763_SNP [dm6]	C	T	1.577e^-4	0.783	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad
2L	16855827	2L_16855827_SNP [dm3] 2L_16855827_SNP [dm6]	A	T	1.584e^-4	0.783	INTRON CG31809	transposable element FlyBase
2R	19600120	2R_19600120_SNP [dm3] 2R_23712597_SNP [dm6]	T	C	1.588e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21343233	X_21343233_INS [dm3] X_21472206_INS [dm6]	A	AGATACA	1.589e^-4	0.783	INTERGENIC
2L	18155072	2L_18155072_SNP [dm3] 2L_18155072_SNP [dm6]	G	A	1.591e^-4	0.783	UPSTREAM CG5783 DOWNSTREAM CG17681 INTRON CG15155
3R	27197700	3R_27197700_DEL [dm3] 3R_31371978_DEL [dm6]	GTGGACAGGATGGCCAAG...	G	1.602e^-4	0.783	UPSTREAM gskt DOWNSTREAM CG34347 INTERGENIC
3L	18866728	3L_18866728_SNP [dm3] 3L_18873628_SNP [dm6]	T	C	1.602e^-4	0.783	NON_SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
3R	26431867	3R_26431867_SNP [dm3] 3R_30606145_SNP [dm6]	A	T	1.609e^-4	0.783	UPSTREAM CG31016 DOWNSTREAM PH4alphaNE3 INTERGENIC
2R	8589937	2R_8589937_SNP [dm3] 2R_12702432_SNP [dm6]	A	C	1.610e^-4	0.783	INTERGENIC
2R	15261078	2R_15261078_SNP [dm3] 2R_19373573_SNP [dm6]	T	C	1.617e^-4	0.783	UPSTREAM CG9416 INTRON CG9416	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10448699	2L_10448699_SNP [dm3] 2L_10448699_SNP [dm6]	T	C	1.638e^-4	0.783	SYNONYMOUS_CODING loh	TF binding site mE1_TFBS_cad
2R	10231539	2R_10231539_SNP [dm3] 2R_14344034_SNP [dm6]	G	C	1.638e^-4	0.783	INTRON Shroom
2L	636745	2L_636745_SNP [dm3] 2L_636745_SNP [dm6]	A	C	1.654e^-4	0.783	INTERGENIC
2L	14797083	2L_14797083_SNP [dm3] 2L_14797083_SNP [dm6]	G	T	1.656e^-4	0.783	UPSTREAM CG18420 INTERGENIC
2R	17757676	2R_17757676_SNP [dm3] 2R_21870171_SNP [dm6]	G	A	1.656e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17771899	2R_17771899_SNP [dm3] 2R_21884394_SNP [dm6]	T	C	1.658e^-4	0.783	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16482750	2L_16482750_INS [dm3] 2L_16482750_INS [dm6]	T	TT	1.677e^-4	0.783	INTRON dac	regulatory region REDfly_CRMs
2L	21075187	2L_21075187_SNP [dm3] 2L_21075187_SNP [dm6]	A	G	1.686e^-4	0.783	UPSTREAM tadr INTERGENIC
3L	13785789	3L_13785789_SNP [dm3] 3L_13792689_SNP [dm6]	T	G	1.687e^-4	0.783	INTRON bru-3
3R	4452759	3R_4452759_SNP [dm3] 3R_8627037_SNP [dm6]	C	T	1.690e^-4	0.783	NON_SYNONYMOUS_CODING 5-HT2B UTR_3_PRIME 5-HT2B	TF binding site mE1_TFBS_cad
2R	15258645	2R_15258645_SNP [dm3] 2R_19371140_SNP [dm6]	A	C	1.693e^-4	0.783	INTRON CG9416	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3L	18259184	3L_18259184_SNP [dm3] 3L_18266084_SNP [dm6]	T	A	1.694e^-4	0.783	INTERGENIC
3L	17364049	3L_17364049_SNP [dm3] 3L_17370949_SNP [dm6]	C	T	1.698e^-4	0.783	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	489992	3R_489992_SNP [dm3] 3R_4664270_SNP [dm6]	A	C	1.700e^-4	0.783	INTRON CG43427	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1281136	3L_1281136_SNP [dm3] 3L_1281136_SNP [dm6]	T	G	1.701e^-4	0.783	INTRON CG32333
2L	5974062	2L_5974062_SNP [dm3] 2L_5974062_SNP [dm6]	A	T	1.707e^-4	0.783	INTRON chic
2L	7656916	2L_7656916_SNP [dm3] 2L_7656916_SNP [dm6]	T	C	1.711e^-4	0.783	INTRON Slob
3L	14336154	3L_14336154_SNP [dm3] 3L_14343054_SNP [dm6]	C	G	1.712e^-4	0.783	INTRON fz
3L	5713183	3L_5713183_DEL [dm3] 3L_5720083_DEL [dm6]	AC	A	1.712e^-4	0.783	UPSTREAM snoRNA:Me18S-A1494 INTRON sif
3R	13707280	3R_13707280_SNP [dm3] 3R_17881558_SNP [dm6]	A	G	1.719e^-4	0.783	INTRON Rim	TF binding site mE1_TFBS_chinmo
2L	16846360	2L_16846360_SNP [dm3] 2L_16846360_SNP [dm6]	T	A	1.720e^-4	0.783	INTRON CG13284
2R	9433606	2R_9433606_SNP [dm3] 2R_13546101_SNP [dm6]	T	C	1.720e^-4	0.783	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
X	16957145	X_16957145_SNP [dm3] X_17063112_SNP [dm6]	G	A	1.726e^-4	0.783	INTRON CG45002
2L	14830492	2L_14830492_SNP [dm3] 2L_14830492_SNP [dm6]	A	C	1.728e^-4	0.783	INTERGENIC
3L	10873948	3L_10873948_SNP [dm3] 3L_10880848_SNP [dm6]	G	T	1.734e^-4	0.783	NON_SYNONYMOUS_CODING CG6409 DOWNSTREAM Blos4	TF binding site mE1_TFBS_chinmo
3L	4350822	3L_4350822_SNP [dm3] 3L_4350822_SNP [dm6]	G	T	1.737e^-4	0.783	INTRON Cip4
2L	16848239	2L_16848239_SNP [dm3] 2L_16848239_SNP [dm6]	C	T	1.738e^-4	0.783	DOWNSTREAM CG31810 INTRON CG13284
2L	16848483	2L_16848483_SNP [dm3] 2L_16848483_SNP [dm6]	A	C	1.739e^-4	0.783	DOWNSTREAM CG31810 INTRON CG13284
3R	25229276	3R_25229276_SNP [dm3] 3R_29403554_SNP [dm6]	C	G	1.743e^-4	0.783	INTRON Ptp99A
X	16876177	X_16876177_SNP [dm3] X_16982144_SNP [dm6]	T	C	1.744e^-4	0.783	INTRON CG45002
2R	8891128	2R_8891128_SNP [dm3] 2R_13003623_SNP [dm6]	A	G	1.746e^-4	0.783	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo
X	14279786	X_14279786_SNP [dm3] X_14385753_SNP [dm6]	C	T	1.749e^-4	0.783	INTRON dpr8
3L	5386749	3L_5386749_SNP [dm3] 3L_5393649_SNP [dm6]	A	C	1.761e^-4	0.783	INTERGENIC
3L	5064467	3L_5064467_SNP [dm3] 3L_5064467_SNP [dm6]	T	G	1.761e^-4	0.783	INTRON Con
X	4315511	X_4315511_SNP [dm3] X_4421478_SNP [dm6]	C	T	1.783e^-4	0.783	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	18513738	2L_18513738_INS [dm3] 2L_18513738_INS [dm6]	G	TCATAATTCATAATTCAATA...	1.790e^-4	0.783	DOWNSTREAM CG10178 INTERGENIC
2L	16843057	2L_16843057_SNP [dm3] 2L_16843057_SNP [dm6]	C	T	1.790e^-4	0.783	UTR_3_PRIME CG13284 DOWNSTREAM CG13284
3L	6382232	3L_6382232_SNP [dm3] 3L_6389132_SNP [dm6]	C	T	1.791e^-4	0.783	INTERGENIC
X	18690851	X_18690851_SNP [dm3] X_18796818_SNP [dm6]	A	G	1.792e^-4	0.783	UPSTREAM bnb INTRON Pk17E & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11860161	2L_11860161_DEL [dm3] 2L_11860161_DEL [dm6]	TT	T	1.792e^-4	0.783	INTRON Pde1c
2R	17150541	2R_17150541_SNP [dm3] 2R_21263036_SNP [dm6]	T	A	1.797e^-4	0.783	INTRON Rgk3
2L	1574939	2L_1574939_SNP [dm3] 2L_1574939_SNP [dm6]	T	C	1.798e^-4	0.783	INTRON haf
2L	8946006	2L_8946006_SNP [dm3] 2L_8946006_SNP [dm6]	A	G	1.808e^-4	0.783	INTRON C1GalTA
2L	8946051	2L_8946051_SNP [dm3] 2L_8946051_SNP [dm6]	G	T	1.808e^-4	0.783	INTRON C1GalTA
3R	16818234	3R_16818234_SNP [dm3] 3R_20992512_SNP [dm6]	C	A	1.809e^-4	0.783	UTR_5_PRIME Calx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20854249	3L_20854249_SNP [dm3] 3L_20861149_SNP [dm6]	C	A	1.816e^-4	0.783	INTRON CG32432
3R	16503405	3R_16503405_SNP [dm3] 3R_20677683_SNP [dm6]	C	G	1.817e^-4	0.783	UPSTREAM CR43452 & 1 other EXON CR45024
3L	438567	3L_438567_SNP [dm3] 3L_438567_SNP [dm6]	A	T	1.822e^-4	0.783	UPSTREAM klar INTRON klar
X	14283664	X_14283664_SNP [dm3] X_14389631_SNP [dm6]	G	A	1.825e^-4	0.783	UTR_5_PRIME dpr8
2L	16843030	2L_16843030_SNP [dm3] 2L_16843030_SNP [dm6]	A	G	1.827e^-4	0.783	UTR_3_PRIME CG13284 DOWNSTREAM CG13284
X	17077634	X_17077634_INS [dm3] X_17183601_INS [dm6]	C	CTCCCATGCA	1.828e^-4	0.783	UPSTREAM CR44026 INTRON baz
3L	18259265	3L_18259265_SNP [dm3] 3L_18266165_SNP [dm6]	G	A	1.828e^-4	0.783	INTERGENIC
2L	8967660	2L_8967660_SNP [dm3] 2L_8967660_SNP [dm6]	T	A	1.832e^-4	0.783	NON_SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
2R	17065935	2R_17065935_SNP [dm3] 2R_21178430_SNP [dm6]	C	T	1.833e^-4	0.783	SYNONYMOUS_CODING CG4286 UPSTREAM Pu INTRON Pu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	14543842	2L_14543842_SNP [dm3] 2L_14543842_SNP [dm6]	T	C	1.837e^-4	0.783	INTERGENIC
3R	20363928	3R_20363928_SNP [dm3] 3R_24538206_SNP [dm6]	C	T	1.839e^-4	0.783	SYNONYMOUS_CODING CG5789	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10280319	3R_10280319_SNP [dm3] 3R_14454597_SNP [dm6]	T	C	1.842e^-4	0.783	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	10995027	3R_10995027_SNP [dm3] 3R_15169305_SNP [dm6]	A	G	1.844e^-4	0.783	INTRON Gyc88E
3R	11456715	3R_11456715_SNP [dm3] 3R_15630993_SNP [dm6]	G	A	1.846e^-4	0.783	INTERGENIC
3L	17602134	3L_17602134_SNP [dm3] 3L_17609034_SNP [dm6]	T	C	1.848e^-4	0.783	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	13996948	2L_13996948_SNP [dm3] 2L_13996948_SNP [dm6]	T	C	1.851e^-4	0.783	INTRON rk
3R	26431892	3R_26431892_SNP [dm3] 3R_30606170_SNP [dm6]	A	T	1.853e^-4	0.783	UPSTREAM CG31016 DOWNSTREAM PH4alphaNE3 INTERGENIC
2L	8974261	2L_8974261_SNP [dm3] 2L_8974261_SNP [dm6]	C	A	1.863e^-4	0.786	INTRON CG9541
3R	13911632	3R_13911632_SNP [dm3] 3R_18085910_SNP [dm6]	T	G	1.876e^-4	0.788	INTERGENIC
3R	4924610	3R_4924610_SNP [dm3] 3R_9098888_SNP [dm6]	T	A	1.877e^-4	0.788	INTRON pum
2R	6927899	2R_6927899_SNP [dm3] 2R_11040394_SNP [dm6]	G	A	1.880e^-4	0.788	INTRON luna
3R	26431777	3R_26431777_SNP [dm3] 3R_30606055_SNP [dm6]	C	G	1.891e^-4	0.79	UTR_3_PRIME PH4alphaNE3 UPSTREAM CG31016
3L	1964525	3L_1964525_SNP [dm3] 3L_1964525_SNP [dm6]	T	G	1.902e^-4	0.79	UTR_5_PRIME SCOT UPSTREAM mv INTRON SCOT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5499224	3R_5499224_SNP [dm3] 3R_9673502_SNP [dm6]	G	A	1.902e^-4	0.79	SYNONYMOUS_CODING CG9492
3L	670469	3L_670469_SNP [dm3] 3L_670469_SNP [dm6]	G	C	1.904e^-4	0.79	INTERGENIC
3L	13367277	3L_13367277_SNP [dm3] 3L_13374177_SNP [dm6]	A	T	1.911e^-4	0.79	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15535088	2L_15535088_SNP [dm3] 2L_15535088_SNP [dm6]	A	G	1.918e^-4	0.79	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7085199	2L_7085199_SNP [dm3] 2L_7085199_SNP [dm6]	C	G	1.919e^-4	0.79	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	8343236	2L_8343236_SNP [dm3] 2L_8343236_SNP [dm6]	C	G	1.927e^-4	0.79	DOWNSTREAM CR45371 INTRON CG14273
3L	12365453	3L_12365453_SNP [dm3] 3L_12372353_SNP [dm6]	C	T	1.928e^-4	0.79	SYNONYMOUS_CODING Ncc69	TF binding site mE1_TFBS_cad
X	14459681	X_14459681_SNP [dm3] X_14565648_SNP [dm6]	G	T	1.931e^-4	0.79	INTERGENIC
3R	500264	3R_500264_SNP [dm3] 3R_4674542_SNP [dm6]	G	T	1.937e^-4	0.79	INTRON CG43427 EXON CR44157
3L	1550490	3L_1550490_SNP [dm3] 3L_1550490_SNP [dm6]	T	A	1.939e^-4	0.79	INTRON Cct1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16847470	2L_16847470_SNP [dm3] 2L_16847470_SNP [dm6]	T	A	1.957e^-4	0.79	UPSTREAM CG13284 INTRON CG13284	TF binding site BDTNP1_TFBS_prd
3L	5713182	3L_5713182_SNP [dm3] 3L_5720082_SNP [dm6]	A	G	1.957e^-4	0.79	UPSTREAM snoRNA:Me18S-A1494 INTRON sif
3L	706070	3L_706070_SNP [dm3] 3L_706070_SNP [dm6]	C	T	1.958e^-4	0.79	UTR_3_PRIME CG13895 DOWNSTREAM CR44514
2R	18682008	2R_18682008_SNP [dm3] 2R_22794503_SNP [dm6]	A	G	1.959e^-4	0.79	INTRON CG42260
3R	14521514	3R_14521514_SNP [dm3] 3R_18695792_SNP [dm6]	C	T	1.960e^-4	0.79	DOWNSTREAM CG34282 INTERGENIC
3L	14439065	3L_14439065_SNP [dm3] 3L_14445965_SNP [dm6]	C	A	1.961e^-4	0.79	INTRON bbg	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu
3R	11182781	3R_11182781_SNP [dm3] 3R_15357059_SNP [dm6]	C	T	1.967e^-4	0.791	UPSTREAM CG5044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22098480	3R_22098480_SNP [dm3] 3R_26272758_SNP [dm6]	G	A	1.977e^-4	0.793	INTRON CG6154
3L	6487225	3L_6487225_SNP [dm3] 3L_6494125_SNP [dm6]	A	G	1.998e^-4	0.795	SYNONYMOUS_CODING CG10144	TF binding site mE1_TFBS_sens
X	14459790	X_14459790_MNP [dm3] X_14565757_MNP [dm6]	GCC	TTT	2.002e^-4	0.795	INTERGENIC
2L	18513815	2L_18513815_SNP [dm3] 2L_18513815_SNP [dm6]	C	T	2.003e^-4	0.795	DOWNSTREAM CG10178 INTERGENIC
2L	18513816	2L_18513816_INS [dm3] 2L_18513816_INS [dm6]	T	TTT	2.003e^-4	0.795	DOWNSTREAM CG10178 INTERGENIC
X	16957451	X_16957451_SNP [dm3] X_17063418_SNP [dm6]	C	T	2.017e^-4	0.795	INTRON CG45002
3R	8961032	3R_8961032_SNP [dm3] 3R_13135310_SNP [dm6]	T	G	2.019e^-4	0.795	INTRON timeout & 2 others
2R	11972589	2R_11972589_SNP [dm3] 2R_16085084_SNP [dm6]	G	A	2.022e^-4	0.795	SYNONYMOUS_CODING Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19383481	2R_19383481_SNP [dm3] 2R_23495958_SNP [dm6]	A	T	2.024e^-4	0.795	INTERGENIC
X	18690716	X_18690716_SNP [dm3] X_18796683_SNP [dm6]	T	C	2.025e^-4	0.795	UPSTREAM bnb INTRON Pk17E & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7164017	2L_7164017_SNP [dm3] 2L_7164017_SNP [dm6]	G	A	2.025e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8940942	2R_8940942_SNP [dm3] 2R_13053437_SNP [dm6]	G	A	2.040e^-4	0.799	INTERGENIC
3R	25229192	3R_25229192_DEL [dm3] 3R_29403470_DEL [dm6]	CC	C	2.043e^-4	0.799	INTRON Ptp99A
3L	13367275	3L_13367275_SNP [dm3] 3L_13374175_SNP [dm6]	A	G	2.057e^-4	0.803	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1335417	3L_1335417_INS [dm3] 3L_1335417_INS [dm6]	C	CC	2.075e^-4	0.804	UPSTREAM CG2211 INTRON l_3_02640	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15548472	2L_15548472_SNP [dm3] 2L_15548472_SNP [dm6]	T	C	2.079e^-4	0.804	DOWNSTREAM Skadu INTERGENIC
2L	12616510	2L_12616510_SNP [dm3] 2L_12616510_SNP [dm6]	G	A	2.088e^-4	0.804	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	4218105	X_4218105_SNP [dm3] X_4324072_SNP [dm6]	G	A	2.091e^-4	0.804	INTRON norpA	TF binding site BDTNP1_TFBS_dl
2R	4465385	2R_4465385_INS [dm3] 2R_8577880_INS [dm6]	C	CT	2.093e^-4	0.804	INTRON CG42326
2R	5361727	2R_5361727_SNP [dm3] 2R_9474222_SNP [dm6]	G	A	2.098e^-4	0.804	INTRON Camta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9384252	X_9384252_SNP [dm3] X_9490219_SNP [dm6]	C	A	2.103e^-4	0.804	INTRON mgl
3L	4350833	3L_4350833_SNP [dm3] 3L_4350833_SNP [dm6]	A	C	2.105e^-4	0.804	INTRON Cip4
2R	17757823	2R_17757823_SNP [dm3] 2R_21870318_SNP [dm6]	A	G	2.107e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	10438202	X_10438202_SNP [dm3] X_10544169_SNP [dm6]	C	T	2.116e^-4	0.804	INTRON spri
3R	8070471	3R_8070471_SNP [dm3] 3R_12244749_SNP [dm6]	C	T	2.117e^-4	0.804	UPSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	8894248	3R_8894248_SNP [dm3] 3R_13068526_SNP [dm6]	C	A	2.118e^-4	0.804	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	16784140	2L_16784140_SNP [dm3] 2L_16784140_SNP [dm6]	T	G	2.119e^-4	0.804	INTRON Mhc	TF binding site mE1_TFBS_cad
2R	13545564	2R_13545564_SNP [dm3] 2R_17658059_SNP [dm6]	A	G	2.121e^-4	0.804	INTRON CCHa1-R
X	20554957	X_20554957_SNP [dm3] X_20683930_SNP [dm6]	C	T	2.132e^-4	0.806	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	10840967	3L_10840967_SNP [dm3] 3L_10847867_SNP [dm6]	T	G	2.133e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9433995	2R_9433995_SNP [dm3] 2R_13546490_SNP [dm6]	T	G	2.141e^-4	0.806	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	23039849	3R_23039849_SNP [dm3] 3R_27214127_SNP [dm6]	T	A	2.148e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9805759	2R_9805759_SNP [dm3] 2R_13918254_SNP [dm6]	T	C	2.157e^-4	0.806	INTRON shot
3R	4406781	3R_4406781_SNP [dm3] 3R_8581059_SNP [dm6]	G	A	2.159e^-4	0.806	INTRON 5-HT2B
2R	9803608	2R_9803608_SNP [dm3] 2R_13916103_SNP [dm6]	A	C	2.160e^-4	0.806	INTRON shot
3R	8044430	3R_8044430_DEL [dm3] 3R_12218708_DEL [dm6]	GCCTATCTGC	G	2.173e^-4	0.806	INTRON CG4848	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12671175	3L_12671175_SNP [dm3] 3L_12678075_SNP [dm6]	A	G	2.182e^-4	0.806	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8965791	2L_8965791_SNP [dm3] 2L_8965791_SNP [dm6]	A	T	2.186e^-4	0.806	NON_SYNONYMOUS_CODING CG32984
3R	14194174	3R_14194174_SNP [dm3] 3R_18368452_SNP [dm6]	C	A	2.187e^-4	0.806	UTR_3_PRIME gl DOWNSTREAM Nup43
2R	10349955	2R_10349955_SNP [dm3] 2R_14462450_SNP [dm6]	A	C	2.190e^-4	0.806	SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26986359	3R_26986359_SNP [dm3] 3R_31160637_SNP [dm6]	G	A	2.203e^-4	0.806	INTRON Gycbeta100B & 1 other
2L	12750507	2L_12750507_SNP [dm3] 2L_12750507_SNP [dm6]	G	C	2.203e^-4	0.806	INTERGENIC
2L	17159788	2L_17159788_SNP [dm3] 2L_17159788_SNP [dm6]	A	G	2.214e^-4	0.806	INTRON beat-IIIa & 1 other
2L	16482862	2L_16482862_SNP [dm3] 2L_16482862_SNP [dm6]	C	G	2.217e^-4	0.806	INTRON dac	regulatory region REDfly_CRMs
3R	13643079	3R_13643079_SNP [dm3] 3R_17817357_SNP [dm6]	G	A	2.227e^-4	0.806	INTRON tinc
2L	10841623	2L_10841623_SNP [dm3] 2L_10841623_SNP [dm6]	T	C	2.231e^-4	0.806	NON_SYNONYMOUS_CODING CG6700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12758146	2L_12758146_SNP [dm3] 2L_12758146_SNP [dm6]	G	A	2.236e^-4	0.806	INTERGENIC
X	4049393	X_4049393_SNP [dm3] X_4155360_SNP [dm6]	T	C	2.236e^-4	0.806	INTRON Fas2
2R	14773052	2R_14773052_SNP [dm3] 2R_18885547_SNP [dm6]	C	A	2.243e^-4	0.806	INTRON sano
2L	6358684	2L_6358684_SNP [dm3] 2L_6358684_SNP [dm6]	C	T	2.244e^-4	0.806	UPSTREAM CG9500 EXON CR44777
2L	15988569	2L_15988569_SNP [dm3] 2L_15988569_SNP [dm6]	A	G	2.247e^-4	0.806	INTERGENIC
3R	18595335	3R_18595335_SNP [dm3] 3R_22769613_SNP [dm6]	T	C	2.253e^-4	0.806	UPSTREAM CG43091 DOWNSTREAM CG43093 & 1 other INTRON Usp12-46 & 2 others
3R	23039841	3R_23039841_SNP [dm3] 3R_27214119_SNP [dm6]	A	C	2.266e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14162133	2R_14162133_SNP [dm3] 2R_18274628_SNP [dm6]	G	A	2.270e^-4	0.806	DOWNSTREAM Ote INTERGENIC
2L	15560154	2L_15560154_SNP [dm3] 2L_15560154_SNP [dm6]	T	C	2.271e^-4	0.806	INTRON kek3
X	3981576	X_3981576_SNP [dm3] X_4087543_SNP [dm6]	C	A	2.271e^-4	0.806	DOWNSTREAM CG43689 INTRON CG43689
2R	18273804	2R_18273804_SNP [dm3] 2R_22386299_SNP [dm6]	T	C	2.273e^-4	0.806	INTRON CG13506
3R	4924608	3R_4924608_SNP [dm3] 3R_9098886_SNP [dm6]	T	C	2.278e^-4	0.806	INTRON pum
3R	4924611	3R_4924611_DEL [dm3] 3R_9098889_DEL [dm6]	TC	T	2.278e^-4	0.806	INTRON pum
2L	12767562	2L_12767562_SNP [dm3] 2L_12767562_SNP [dm6]	C	A	2.281e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	17209991	2R_17209991_SNP [dm3] 2R_21322486_SNP [dm6]	G	C	2.287e^-4	0.806	UPSTREAM dom INTRON CG30394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	14301849	2L_14301849_SNP [dm3] 2L_14301849_SNP [dm6]	T	C	2.288e^-4	0.806	INTRON wb
3R	7407062	3R_7407062_SNP [dm3] 3R_11581340_SNP [dm6]	C	T	2.288e^-4	0.806	SYNONYMOUS_CODING CG5342 UPSTREAM wkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8974092	2L_8974092_SNP [dm3] 2L_8974092_SNP [dm6]	C	T	2.288e^-4	0.806	INTRON CG9541
3L	1454495	3L_1454495_SNP [dm3] 3L_1454495_SNP [dm6]	T	G	2.310e^-4	0.806	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
2R	17941284	2R_17941284_SNP [dm3] 2R_22053779_SNP [dm6]	T	G	2.316e^-4	0.806	INTERGENIC
X	4315298	X_4315298_SNP [dm3] X_4421265_SNP [dm6]	T	A	2.319e^-4	0.806	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7685289	2L_7685289_SNP [dm3] 2L_7685289_SNP [dm6]	A	T	2.326e^-4	0.806	DOWNSTREAM Myo28B1 INTRON Myo28B1 EXON CR44148
3R	9744077	3R_9744077_SNP [dm3] 3R_13918355_SNP [dm6]	G	A	2.328e^-4	0.806	INTERGENIC
3L	17366324	3L_17366324_SNP [dm3] 3L_17373224_SNP [dm6]	T	C	2.337e^-4	0.806	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8179535	2R_8179535_SNP [dm3] 2R_12292030_SNP [dm6]	A	G	2.337e^-4	0.806	INTRON CG42700
2R	19573384	2R_19573384_SNP [dm3] 2R_23685861_SNP [dm6]	T	A	2.346e^-4	0.806	UPSTREAM l_2_efl INTRON St3
2L	16797805	2L_16797805_SNP [dm3] 2L_16797805_SNP [dm6]	A	T	2.348e^-4	0.806	SYNONYMOUS_CODING Ugt36Bb	TF binding site mE1_TFBS_sens
3L	4350827	3L_4350827_SNP [dm3] 3L_4350827_SNP [dm6]	T	G	2.353e^-4	0.806	INTRON Cip4
2R	7485951	2R_7485951_SNP [dm3] 2R_11598446_SNP [dm6]	A	T	2.354e^-4	0.806	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
2L	5287698	2L_5287698_SNP [dm3] 2L_5287698_SNP [dm6]	C	T	2.356e^-4	0.806	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
X	13475820	X_13475820_SNP [dm3] X_13581787_SNP [dm6]	A	T	2.359e^-4	0.806	INTRON Tango13
X	6282812	X_6282812_SNP [dm3] X_6388779_SNP [dm6]	A	G	2.359e^-4	0.806	INTERGENIC
2L	8964893	2L_8964893_SNP [dm3] 2L_8964893_SNP [dm6]	A	T	2.361e^-4	0.806	UPSTREAM CG32984 DOWNSTREAM CG32985 INTERGENIC
3L	1964722	3L_1964722_SNP [dm3] 3L_1964722_SNP [dm6]	T	A	2.363e^-4	0.806	UPSTREAM mv INTRON SCOT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18513787	2L_18513787_SNP [dm3] 2L_18513787_SNP [dm6]	A	T	2.365e^-4	0.806	DOWNSTREAM CG10178 INTERGENIC
2R	20158088	2R_20158088_SNP [dm3] 2R_24270565_SNP [dm6]	T	G	2.365e^-4	0.806	INTERGENIC
3L	8796526	3L_8796526_SNP [dm3] 3L_8803426_SNP [dm6]	C	T	2.367e^-4	0.806	SYNONYMOUS_CODING CG34426 DOWNSTREAM CG32023
3L	8796529	3L_8796529_SNP [dm3] 3L_8803429_SNP [dm6]	C	T	2.367e^-4	0.806	SYNONYMOUS_CODING CG34426 DOWNSTREAM CG32023
2L	15548338	2L_15548338_SNP [dm3] 2L_15548338_SNP [dm6]	G	A	2.382e^-4	0.809	DOWNSTREAM Skadu INTERGENIC
3L	19696888	3L_19696888_SNP [dm3] 3L_19703788_SNP [dm6]	T	G	2.402e^-4	0.809	INTRON serp
3L	17366369	3L_17366369_SNP [dm3] 3L_17373269_SNP [dm6]	G	A	2.410e^-4	0.809	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	612023	3L_612023_SNP [dm3] 3L_612023_SNP [dm6]	T	A	2.410e^-4	0.809	INTERGENIC
2R	575771	2R_575771_SNP [dm3] 2R_4688266_SNP [dm6]	A	C	2.414e^-4	0.809	INTERGENIC
2L	16876166	2L_16876166_SNP [dm3] 2L_16876166_SNP [dm6]	A	G	2.420e^-4	0.809	INTRON CR31781 EXON CR31781
2L	18513788	2L_18513788_SNP [dm3] 2L_18513788_SNP [dm6]	C	T	2.423e^-4	0.809	DOWNSTREAM CG10178 INTERGENIC
3L	6477500	3L_6477500_SNP [dm3] 3L_6484400_SNP [dm6]	C	T	2.424e^-4	0.809	SYNONYMOUS_CODING CG42747	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4315548	X_4315548_SNP [dm3] X_4421515_SNP [dm6]	G	A	2.434e^-4	0.809	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	13044306	X_13044306_SNP [dm3] X_13150273_SNP [dm6]	T	C	2.436e^-4	0.809	NON_SYNONYMOUS_CODING CG32645
X	10438203	X_10438203_SNP [dm3] X_10544170_SNP [dm6]	C	T	2.440e^-4	0.809	INTRON spri
3R	27237997	3R_27237997_SNP [dm3] 3R_31412275_SNP [dm6]	G	C	2.444e^-4	0.809	INTRON Gprk2	TF binding site mE1_TFBS_cad
X	9384253	X_9384253_SNP [dm3] X_9490220_SNP [dm6]	A	C	2.448e^-4	0.809	INTRON mgl
2L	18156804	2L_18156804_SNP [dm3] 2L_18156804_SNP [dm6]	A	G	2.455e^-4	0.809	SPLICE_SITE_REGION CG5783 DOWNSTREAM CG15155 & 1 other INTRON CG5783
2L	16795766	2L_16795766_SNP [dm3] 2L_16795766_SNP [dm6]	G	T	2.458e^-4	0.809	NON_SYNONYMOUS_CODING Ugt36Ba UPSTREAM Ugt36Bb
2R	8456471	2R_8456471_SNP [dm3] 2R_12568966_SNP [dm6]	T	C	2.460e^-4	0.809	UTR_3_PRIME Cyp301a1 DOWNSTREAM Ak6	TF binding site mE1_TFBS_HSA
X	14270926	X_14270926_SNP [dm3] X_14376893_SNP [dm6]	C	A	2.463e^-4	0.809	INTRON dpr8
2L	16791614	2L_16791614_INS [dm3] 2L_16791614_INS [dm6]	G	GGG	2.468e^-4	0.809	UTR_5_PRIME CG17928 UPSTREAM Cyt-b5-r	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	816915	3R_816915_SNP [dm3] 3R_4991193_SNP [dm6]	G	A	2.473e^-4	0.809	INTRON CG2022	TF binding site mE1_TFBS_cad
3R	12732203	3R_12732203_SNP [dm3] 3R_16906481_SNP [dm6]	A	C	2.475e^-4	0.809	INTRON iab-8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10628271	3L_10628271_SNP [dm3] 3L_10635171_SNP [dm6]	A	G	2.476e^-4	0.809	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22984559	3R_22984559_SNP [dm3] 3R_27158837_SNP [dm6]	A	T	2.481e^-4	0.809	SYNONYMOUS_CODING grass	TF binding site mE1_TFBS_cad
2R	20159282	2R_20159282_SNP [dm3] 2R_24271759_SNP [dm6]	G	C	2.491e^-4	0.809	INTERGENIC
3L	11860517	3L_11860517_SNP [dm3] 3L_11867417_SNP [dm6]	G	A	2.495e^-4	0.809	INTRON CG44837
3L	9089248	3L_9089248_SNP [dm3] 3L_9096148_SNP [dm6]	G	A	2.497e^-4	0.809	UPSTREAM CG13315 INTERGENIC
2R	6670522	2R_6670522_SNP [dm3] 2R_10783017_SNP [dm6]	T	C	2.499e^-4	0.809	UPSTREAM CG33144 INTRON CG33144 EXON CR44299	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10840968	3L_10840968_SNP [dm3] 3L_10847868_SNP [dm6]	G	A	2.512e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9803676	2R_9803676_SNP [dm3] 2R_13916171_SNP [dm6]	A	C	2.514e^-4	0.809	INTRON shot
X	14278222	X_14278222_SNP [dm3] X_14384189_SNP [dm6]	A	T	2.517e^-4	0.809	INTRON dpr8
2L	16013197	2L_16013197_SNP [dm3] 2L_16013197_SNP [dm6]	G	A	2.520e^-4	0.809	INTRON beat-Ic
3L	8838353	3L_8838353_SNP [dm3] 3L_8845253_SNP [dm6]	T	A	2.522e^-4	0.809	INTRON dally
3L	394241	3L_394241_SNP [dm3] 3L_394241_SNP [dm6]	C	G	2.528e^-4	0.809	UPSTREAM CR45378 EXON CR43969
3L	612005	3L_612005_SNP [dm3] 3L_612005_SNP [dm6]	C	G	2.530e^-4	0.809	INTERGENIC
3R	26496285	3R_26496285_SNP [dm3] 3R_30670563_SNP [dm6]	G	A	2.534e^-4	0.809	INTERGENIC
3R	14604388	3R_14604388_SNP [dm3] 3R_18778666_SNP [dm6]	T	A	2.535e^-4	0.809	INTRON CG7720
2L	8580490	2L_8580490_SNP [dm3] 2L_8580490_SNP [dm6]	G	A	2.542e^-4	0.809	INTRON Sema-1a
3L	6760044	3L_6760044_SNP [dm3] 3L_6766944_SNP [dm6]	T	C	2.548e^-4	0.809	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	5599609	3L_5599609_SNP [dm3] 3L_5606509_SNP [dm6]	A	G	2.548e^-4	0.809	NON_SYNONYMOUS_CODING mthl2 DOWNSTREAM Eaf6
X	16957953	X_16957953_SNP [dm3] X_17063920_SNP [dm6]	C	A	2.549e^-4	0.809	INTRON CG45002
X	16921040	X_16921040_SNP [dm3] X_17027007_SNP [dm6]	G	C	2.551e^-4	0.809	INTRON CG45002
3L	11880284	3L_11880284_SNP [dm3] 3L_11887184_SNP [dm6]	T	A	2.556e^-4	0.809	DOWNSTREAM CG5897 INTRON CG44837
3R	24553087	3R_24553087_SNP [dm3] 3R_28727365_SNP [dm6]	T	A	2.560e^-4	0.809	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7830971	3L_7830971_DEL [dm3] 3L_7837871_DEL [dm6]	AA	A	2.565e^-4	0.809	INTRON Pdp1	regulatory region REDfly_CRMs
2L	13701246	2L_13701246_SNP [dm3] 2L_13701246_SNP [dm6]	A	C	2.566e^-4	0.809	INTRON CG31814
X	6282814	X_6282814_SNP [dm3] X_6388781_SNP [dm6]	T	G	2.569e^-4	0.809	INTERGENIC
3L	10576710	3L_10576710_SNP [dm3] 3L_10583610_SNP [dm6]	T	A	2.577e^-4	0.809	INTRON A2bp1
2R	8701288	2R_8701288_SNP [dm3] 2R_12813783_SNP [dm6]	T	C	2.583e^-4	0.809	INTERGENIC
3L	11364226	3L_11364226_SNP [dm3] 3L_11371126_SNP [dm6]	C	G	2.585e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26159365	3R_26159365_SNP [dm3] 3R_30333643_SNP [dm6]	A	G	2.593e^-4	0.809	INTRON hdc
2R	19572858	2R_19572858_SNP [dm3] 2R_23685335_SNP [dm6]	G	T	2.593e^-4	0.809	NON_SYNONYMOUS_CODING l_2_efl DOWNSTREAM St3 INTRON St3	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	4315530	X_4315530_SNP [dm3] X_4421497_SNP [dm6]	G	T	2.595e^-4	0.809	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	14824784	2L_14824784_SNP [dm3] 2L_14824784_SNP [dm6]	A	C	2.600e^-4	0.809	INTERGENIC
2R	17945133	2R_17945133_SNP [dm3] 2R_22057628_SNP [dm6]	C	A	2.610e^-4	0.811	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
3L	12830705	3L_12830705_SNP [dm3] 3L_12837605_SNP [dm6]	T	C	2.617e^-4	0.811	INTRON CG10960
3R	27185925	3R_27185925_DEL [dm3] 3R_31360203_DEL [dm6]	AA	A	2.618e^-4	0.811	INTRON CG34347
3L	911475	3L_911475_SNP [dm3] 3L_911475_SNP [dm6]	C	A	2.631e^-4	0.812	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
X	11767421	X_11767421_SNP [dm3] X_11873388_SNP [dm6]	T	G	2.631e^-4	0.812	UTR_5_PRIME CG15739 UPSTREAM CG15739 & 1 other
2R	4222081	2R_4222081_SNP [dm3] 2R_8334576_SNP [dm6]	G	T	2.636e^-4	0.812	INTRON pdm3
3L	10359057	3L_10359057_SNP [dm3] 3L_10365957_SNP [dm6]	A	G	2.639e^-4	0.812	DOWNSTREAM mir-276a EXON CR44327	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
X	16957979	X_16957979_SNP [dm3] X_17063946_SNP [dm6]	T	C	2.644e^-4	0.812	INTRON CG45002
2R	1324784	2R_1324784_SNP [dm3] 2R_5437279_SNP [dm6]	T	C	2.648e^-4	0.812	INTRON laccase2	transposable element FlyBase
2R	9252105	2R_9252105_SNP [dm3] 2R_13364600_SNP [dm6]	T	A	2.660e^-4	0.812	INTERGENIC
3R	4924604	3R_4924604_SNP [dm3] 3R_9098882_SNP [dm6]	T	G	2.662e^-4	0.812	INTRON pum
3R	7406969	3R_7406969_SNP [dm3] 3R_11581247_SNP [dm6]	G	T	2.664e^-4	0.812	NON_SYNONYMOUS_CODING CG5342 UPSTREAM wkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7773365	2L_7773365_SNP [dm3] 2L_7773365_SNP [dm6]	T	A	2.666e^-4	0.812	INTRON CG7191
2R	15261107	2R_15261107_SNP [dm3] 2R_19373602_SNP [dm6]	T	C	2.675e^-4	0.812	UTR_5_PRIME CG9416 UPSTREAM CG9416	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15261108	2R_15261108_SNP [dm3] 2R_19373603_SNP [dm6]	T	A	2.675e^-4	0.812	UTR_5_PRIME CG9416 UPSTREAM CG9416	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5617658	2L_5617658_SNP [dm3] 2L_5617658_SNP [dm6]	T	C	2.692e^-4	0.814	UTR_5_PRIME CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17065974	2R_17065974_SNP [dm3] 2R_21178469_SNP [dm6]	G	A	2.692e^-4	0.814	SYNONYMOUS_CODING CG4286 UPSTREAM Pu INTRON Pu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16036069	X_16036069_DEL [dm3] X_16142036_DEL [dm6]	AA	A	2.699e^-4	0.814	INTRON disco-r	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12155789	X_12155789_SNP [dm3] X_12261756_SNP [dm6]	G	A	2.704e^-4	0.814	INTRON Ten-a
2L	16830053	2L_16830053_SNP [dm3] 2L_16830053_SNP [dm6]	G	C	2.711e^-4	0.814	NON_SYNONYMOUS_CODING CG31739	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18046849	3R_18046849_SNP [dm3] 3R_22221127_SNP [dm6]	C	T	2.720e^-4	0.814	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	937751	2L_937751_SNP [dm3] 2L_937751_SNP [dm6]	A	C	2.722e^-4	0.814	INTRON CG4341
3L	13348359	3L_13348359_SNP [dm3] 3L_13355259_SNP [dm6]	T	C	2.724e^-4	0.814	DOWNSTREAM CG17687 INTERGENIC
X	1652158	X_1652158_SNP [dm3] X_1758125_SNP [dm6]	G	A	2.728e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5712238	3L_5712238_SNP [dm3] 3L_5719138_SNP [dm6]	G	A	2.732e^-4	0.814	INTRON sif
3L	10840965	3L_10840965_INS [dm3] 3L_10847865_INS [dm6]	T	AAAC	2.736e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5811625	3L_5811625_SNP [dm3] 3L_5818525_SNP [dm6]	T	C	2.739e^-4	0.814	INTRON vn
2L	7110264	2L_7110264_SNP [dm3] 2L_7110264_SNP [dm6]	A	G	2.740e^-4	0.814	INTRON Pvf3
3R	26091372	3R_26091372_SNP [dm3] 3R_30265650_SNP [dm6]	T	A	2.745e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	658859	2L_658859_SNP [dm3] 2L_658859_SNP [dm6]	C	T	2.747e^-4	0.814	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2928694	X_2928694_SNP [dm3] X_3034661_SNP [dm6]	C	G	2.752e^-4	0.814	INTRON kirre
3R	2999124	3R_2999124_DEL [dm3] 3R_7173402_DEL [dm6]	GAG	G	2.773e^-4	0.818	INTRON sas	TF binding site BDTNP1_TFBS_Med
2L	8984292	2L_8984292_SNP [dm3] 2L_8984292_SNP [dm6]	G	T	2.774e^-4	0.818	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11802831	X_11802831_SNP [dm3] X_11908798_SNP [dm6]	C	G	2.795e^-4	0.82	INTRON pot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17781714	2R_17781714_SNP [dm3] 2R_21894209_SNP [dm6]	A	T	2.795e^-4	0.82	INTRON Fili
3L	4350818	3L_4350818_SNP [dm3] 3L_4350818_SNP [dm6]	C	A	2.812e^-4	0.82	INTRON Cip4
2L	5848615	2L_5848615_SNP [dm3] 2L_5848615_SNP [dm6]	G	T	2.821e^-4	0.82	INTRON TrissinR
2L	20994435	2L_20994435_SNP [dm3] 2L_20994435_SNP [dm6]	T	A	2.821e^-4	0.82	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	7121005	2L_7121005_SNP [dm3] 2L_7121005_SNP [dm6]	C	G	2.822e^-4	0.82	INTRON Pvf3	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	14706782	2R_14706782_SNP [dm3] 2R_18819277_SNP [dm6]	G	A	2.831e^-4	0.82	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	8071179	3R_8071179_SNP [dm3] 3R_12245457_SNP [dm6]	T	G	2.833e^-4	0.82	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	22017439	2L_22017439_SNP [dm3] 2L_22017439_SNP [dm6]	A	G	2.845e^-4	0.82	DOWNSTREAM CG31693 INTERGENIC
2L	4004710	2L_4004710_SNP [dm3] 2L_4004710_SNP [dm6]	T	G	2.848e^-4	0.82	UPSTREAM CG15422 DOWNSTREAM CG34176 INTERGENIC
X	13035496	X_13035496_SNP [dm3] X_13141463_SNP [dm6]	A	C	2.850e^-4	0.82	INTRON CG32645
2R	16384258	2R_16384258_SNP [dm3] 2R_20496753_SNP [dm6]	T	G	2.854e^-4	0.82	INTERGENIC
X	13035484	X_13035484_SNP [dm3] X_13141451_SNP [dm6]	C	T	2.874e^-4	0.82	INTRON CG32645
3L	5910221	3L_5910221_SNP [dm3] 3L_5917121_SNP [dm6]	T	A	2.875e^-4	0.82	UTR_3_PRIME CG13288 DOWNSTREAM CG10483
3L	5910229	3L_5910229_SNP [dm3] 3L_5917129_SNP [dm6]	A	G	2.875e^-4	0.82	UTR_3_PRIME CG13288 DOWNSTREAM CG10483
3L	2026841	3L_2026841_SNP [dm3] 3L_2026841_SNP [dm6]	A	C	2.875e^-4	0.82	UPSTREAM CG34259 INTERGENIC
3R	26496219	3R_26496219_INS [dm3] 3R_30670497_INS [dm6]	G	GG	2.880e^-4	0.82	INTERGENIC
3L	5120834	3L_5120834_SNP [dm3] 3L_5127734_SNP [dm6]	G	A	2.881e^-4	0.82	INTERGENIC
3R	27185716	3R_27185716_SNP [dm3] 3R_31359994_SNP [dm6]	A	G	2.884e^-4	0.82	NON_SYNONYMOUS_CODING CG34347
3L	8469100	3L_8469100_SNP [dm3] 3L_8476000_SNP [dm6]	G	A	2.888e^-4	0.82	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	5925061	X_5925061_SNP [dm3] X_6031028_SNP [dm6]	T	G	2.889e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16954145	X_16954145_SNP [dm3] X_17060112_SNP [dm6]	C	A	2.897e^-4	0.82	INTRON CG45002
2L	16879230	2L_16879230_SNP [dm3] 2L_16879230_SNP [dm6]	T	C	2.902e^-4	0.82	START_GAINED CG32832 UTR_5_PRIME CG32832 UPSTREAM CG31743 & 1 other DOWNSTREAM CR31781	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9851701	2R_9851701_SNP [dm3] 2R_13964196_SNP [dm6]	C	T	2.903e^-4	0.82	UPSTREAM CG42806 & 1 other INTRON Cp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5795173	3L_5795173_SNP [dm3] 3L_5802073_SNP [dm6]	G	A	2.904e^-4	0.82	UPSTREAM CG42272 INTRON S6k	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	19754030	X_19754030_SNP [dm3] X_19859997_SNP [dm6]	A	G	2.904e^-4	0.82	NON_SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618 DOWNSTREAM Nup205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16215871	3R_16215871_INS [dm3] 3R_20390149_INS [dm6]	T	TGCT	2.911e^-4	0.82	CODON_INSERTION Gfrl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10231501	2R_10231501_SNP [dm3] 2R_14343996_SNP [dm6]	T	C	2.912e^-4	0.82	INTRON Shroom
3R	27237996	3R_27237996_SNP [dm3] 3R_31412274_SNP [dm6]	T	G	2.913e^-4	0.82	INTRON Gprk2	TF binding site mE1_TFBS_cad
3R	18147589	3R_18147589_SNP [dm3] 3R_22321867_SNP [dm6]	T	C	2.925e^-4	0.82	INTRON CG34377
3L	14204526	3L_14204526_SNP [dm3] 3L_14211426_SNP [dm6]	T	C	2.926e^-4	0.82	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	6057932	3L_6057932_SNP [dm3] 3L_6064832_SNP [dm6]	G	A	2.926e^-4	0.82	INTERGENIC
3L	706366	3L_706366_SNP [dm3] 3L_706366_SNP [dm6]	A	C	2.931e^-4	0.82	NON_SYNONYMOUS_CODING CG13895 DOWNSTREAM CR44514
3L	8167562	3L_8167562_SNP [dm3] 3L_8174462_SNP [dm6]	G	T	2.932e^-4	0.82	NON_SYNONYMOUS_CODING RecQ4
3L	5910296	3L_5910296_SNP [dm3] 3L_5917196_SNP [dm6]	C	G	2.936e^-4	0.82	UTR_3_PRIME CG13288 DOWNSTREAM CG10483
3R	18525191	3R_18525191_SNP [dm3] 3R_22699469_SNP [dm6]	T	C	2.941e^-4	0.82	SYNONYMOUS_CODING Cyp6d4
3L	10840960	3L_10840960_SNP [dm3] 3L_10847860_SNP [dm6]	C	G	2.949e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14797081	2L_14797081_SNP [dm3] 2L_14797081_SNP [dm6]	T	C	2.951e^-4	0.82	UPSTREAM CG18420 INTERGENIC
2R	1312291	2R_1312291_SNP [dm3] 2R_5424786_SNP [dm6]	T	A	2.954e^-4	0.82	INTRON laccase2	transposable element FlyBase
2L	18147428	2L_18147428_SNP [dm3] 2L_18147428_SNP [dm6]	G	A	2.957e^-4	0.82	INTRON Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	4315317	X_4315317_SNP [dm3] X_4421284_SNP [dm6]	T	C	2.958e^-4	0.82	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	9566954	3R_9566954_SNP [dm3] 3R_13741232_SNP [dm6]	T	C	2.970e^-4	0.822	INTRON CG34383
3L	5910161	3L_5910161_SNP [dm3] 3L_5917061_SNP [dm6]	G	A	2.982e^-4	0.823	DOWNSTREAM CG10483 INTRON CG13288
3R	22989617	3R_22989617_SNP [dm3] 3R_27163895_SNP [dm6]	C	T	2.984e^-4	0.823	SYNONYMOUS_CODING ppk31 DOWNSTREAM CG5909 & 1 other
2R	13761025	2R_13761025_SNP [dm3] 2R_17873520_SNP [dm6]	C	A	2.995e^-4	0.825	UPSTREAM Elk INTERGENIC
3R	7166303	3R_7166303_SNP [dm3] 3R_11340581_SNP [dm6]	C	T	3.017e^-4	0.827	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17280939	2R_17280939_SNP [dm3] 2R_21393434_SNP [dm6]	T	A	3.028e^-4	0.827	UTR_3_PRIME Sdc DOWNSTREAM Acox57D-d & 1 other
3R	15048704	3R_15048704_SNP [dm3] 3R_19222982_SNP [dm6]	C	G	3.029e^-4	0.827	INTRON vib
2L	19801607	2L_19801607_SNP [dm3] 2L_19801607_SNP [dm6]	C	A	3.032e^-4	0.827	INTRON sick
2L	8966046	2L_8966046_SNP [dm3] 2L_8966046_SNP [dm6]	T	A	3.038e^-4	0.827	NON_SYNONYMOUS_CODING CG32984
3R	17692127	3R_17692127_SNP [dm3] 3R_21866405_SNP [dm6]	G	A	3.040e^-4	0.827	SYNONYMOUS_CODING CG6569 DOWNSTREAM CG6569 & 1 other
3R	18566015	3R_18566015_SNP [dm3] 3R_22740293_SNP [dm6]	C	T	3.043e^-4	0.827	SYNONYMOUS_CODING Dcr-1 UPSTREAM CG6985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17110818	2R_17110818_SNP [dm3] 2R_21223313_SNP [dm6]	T	C	3.051e^-4	0.827	INTRON ASPP
2L	17331787	2L_17331787_SNP [dm3] 2L_17331787_SNP [dm6]	C	T	3.058e^-4	0.827	INTERGENIC
3L	5606313	3L_5606313_DEL [dm3] 3L_5613213_DEL [dm6]	AA	A	3.061e^-4	0.827	INTERGENIC
3R	18737022	3R_18737022_SNP [dm3] 3R_22911300_SNP [dm6]	G	T	3.063e^-4	0.827	INTRON klg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26091428	3R_26091428_SNP [dm3] 3R_30265706_SNP [dm6]	T	C	3.066e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	15138760	X_15138760_SNP [dm3] X_15244727_SNP [dm6]	T	A	3.068e^-4	0.827	SYNONYMOUS_CODING PPYR1
2R	17066028	2R_17066028_SNP [dm3] 2R_21178523_SNP [dm6]	G	T	3.069e^-4	0.827	SYNONYMOUS_CODING CG4286 UPSTREAM Pu INTRON Pu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18497926	2R_18497926_SNP [dm3] 2R_22610421_SNP [dm6]	G	A	3.077e^-4	0.827	SYNONYMOUS_CODING CG4329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12671203	3L_12671203_SNP [dm3] 3L_12678103_SNP [dm6]	T	A	3.081e^-4	0.827	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12671205	3L_12671205_SNP [dm3] 3L_12678105_SNP [dm6]	T	A	3.081e^-4	0.827	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10578486	3R_10578486_SNP [dm3] 3R_14752764_SNP [dm6]	T	C	3.082e^-4	0.827	SYNONYMOUS_CODING CG7362 INTRON jvl	TF binding site mE1_TFBS_cad
3R	17671177	3R_17671177_SNP [dm3] 3R_21845455_SNP [dm6]	C	T	3.092e^-4	0.828	SYNONYMOUS_STOP Gr93d UPSTREAM Gr93c EXON CR44087
2L	8968237	2L_8968237_SNP [dm3] 2L_8968237_SNP [dm6]	G	A	3.104e^-4	0.828	NON_SYNONYMOUS_CODING CG18088
3L	17385988	3L_17385988_SNP [dm3] 3L_17392888_SNP [dm6]	A	G	3.104e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17363620	3L_17363620_SNP [dm3] 3L_17370520_SNP [dm6]	C	G	3.111e^-4	0.828	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA
2L	16848834	2L_16848834_SNP [dm3] 2L_16848834_SNP [dm6]	T	C	3.114e^-4	0.828	UPSTREAM CG13284 DOWNSTREAM CG31810 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	15190030	2R_15190030_INS [dm3] 2R_19302525_INS [dm6]	G	GG	3.114e^-4	0.828	INTRON Tab2
X	14062269	X_14062269_DEL [dm3] X_14168236_DEL [dm6]	AATTTTATTTCTAGCCCC...	G	3.128e^-4	0.828	INTERGENIC
X	5849858	X_5849858_SNP [dm3] X_5955825_SNP [dm6]	G	A	3.129e^-4	0.828	SYNONYMOUS_CODING CG6067
X	14276742	X_14276742_SNP [dm3] X_14382709_SNP [dm6]	T	C	3.140e^-4	0.828	INTRON dpr8
3L	14081216	3L_14081216_SNP [dm3] 3L_14088116_SNP [dm6]	G	A	3.144e^-4	0.828	INTERGENIC
2L	5105159	2L_5105159_SNP [dm3] 2L_5105159_SNP [dm6]	C	T	3.149e^-4	0.828	INTRON Msp300
X	12151258	X_12151258_SNP [dm3] X_12257225_SNP [dm6]	G	A	3.151e^-4	0.828	INTRON Ten-a
2R	13761016	2R_13761016_DEL [dm3] 2R_17873511_DEL [dm6]	AAT	A	3.152e^-4	0.828	UPSTREAM Elk INTERGENIC
X	7230472	X_7230472_SNP [dm3] X_7336439_SNP [dm6]	T	C	3.152e^-4	0.828	UPSTREAM CBP INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	20860803	3L_20860803_SNP [dm3] 3L_20867703_SNP [dm6]	G	T	3.153e^-4	0.828	INTRON CG32432
3L	16035217	3L_16035217_SNP [dm3] 3L_16042117_SNP [dm6]	T	C	3.161e^-4	0.829	INTRON th	TF binding site BDTNP1_TFBS_dl
X	494523	X_494523_DEL [dm3] X_600490_DEL [dm6]	CTCTTATGTTTTC...	C	3.170e^-4	0.83	INTRON CG13366
3L	2027376	3L_2027376_SNP [dm3] 3L_2027376_SNP [dm6]	C	G	3.173e^-4	0.83	NON_SYNONYMOUS_CODING CG34259
2L	5287697	2L_5287697_SNP [dm3] 2L_5287697_SNP [dm6]	T	A	3.176e^-4	0.83	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
2L	15142616	2L_15142616_SNP [dm3] 2L_15142616_SNP [dm6]	C	T	3.198e^-4	0.83	INTERGENIC
2R	8591773	2R_8591773_SNP [dm3] 2R_12704268_SNP [dm6]	T	C	3.204e^-4	0.83	UPSTREAM CG42663 INTERGENIC
X	14276930	X_14276930_SNP [dm3] X_14382897_SNP [dm6]	T	A	3.207e^-4	0.83	INTRON dpr8
3L	8451386	3L_8451386_SNP [dm3] 3L_8458286_SNP [dm6]	T	C	3.209e^-4	0.83	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	7783074	3R_7783074_SNP [dm3] 3R_11957352_SNP [dm6]	A	C	3.213e^-4	0.83	UPSTREAM Hsp70Aa INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	3277011	3L_3277011_SNP [dm3] 3L_3277011_SNP [dm6]	C	T	3.215e^-4	0.83	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25216735	3R_25216735_SNP [dm3] 3R_29391013_SNP [dm6]	C	T	3.216e^-4	0.83	INTRON Ptp99A
2L	17516133	2L_17516133_SNP [dm3] 2L_17516133_SNP [dm6]	T	G	3.219e^-4	0.83	INTRON Dhc36C	TF binding site BDTNP1_TFBS_twi
2R	17952451	2R_17952451_SNP [dm3] 2R_22064946_SNP [dm6]	G	A	3.223e^-4	0.83	INTRON Snp
2R	19591022	2R_19591022_SNP [dm3] 2R_23703499_SNP [dm6]	C	G	3.225e^-4	0.83	SYNONYMOUS_CODING l_2_dtl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2931492	2R_2931492_SNP [dm3] 2R_7043987_SNP [dm6]	A	G	3.232e^-4	0.83	SYNONYMOUS_CODING Tsp42Ek
2R	4465367	2R_4465367_SNP [dm3] 2R_8577862_SNP [dm6]	C	T	3.243e^-4	0.83	INTRON CG42326
X	15694150	X_15694150_SNP [dm3] X_15800117_SNP [dm6]	G	A	3.247e^-4	0.83	SYNONYMOUS_CODING CG15602 UPSTREAM CG32581	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	10246119	2L_10246119_SNP [dm3] 2L_10246119_SNP [dm6]	C	T	3.249e^-4	0.83	DOWNSTREAM CR44995 INTRON chico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7311054	3R_7311054_SNP [dm3] 3R_11485332_SNP [dm6]	C	T	3.253e^-4	0.83	INTERGENIC
X	7264243	X_7264243_SNP [dm3] X_7370210_SNP [dm6]	A	G	3.257e^-4	0.83	INTRON CG1677 & 1 other
3R	25284641	3R_25284641_MNP [dm3] 3R_29458919_MNP [dm6]	TGT	CAA	3.273e^-4	0.83	INTRON Ptp99A EXON CR44022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	1550410	3L_1550410_SNP [dm3] 3L_1550410_SNP [dm6]	T	A	3.279e^-4	0.83	INTRON Cct1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	14678042	2R_14678042_SNP [dm3] 2R_18790537_SNP [dm6]	A	C	3.283e^-4	0.83	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
3L	705939	3L_705939_SNP [dm3] 3L_705939_SNP [dm6]	A	T	3.303e^-4	0.83	DOWNSTREAM CG13895 & 1 other INTERGENIC
2L	18183125	2L_18183125_SNP [dm3] 2L_18183125_SNP [dm6]	C	T	3.307e^-4	0.83	SYNONYMOUS_CODING CG7180 INTRON CG42750
2R	17758459	2R_17758459_SNP [dm3] 2R_21870954_SNP [dm6]	T	A	3.308e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	3901445	2R_3901445_INS [dm3] 2R_8013940_INS [dm6]	A	AC	3.309e^-4	0.83	UPSTREAM CG14762 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	6830861	X_6830861_SNP [dm3] X_6936828_SNP [dm6]	G	A	3.319e^-4	0.83	INTRON CG14431
2L	5973720	2L_5973720_SNP [dm3] 2L_5973720_SNP [dm6]	A	G	3.323e^-4	0.83	INTRON chic
2L	16842877	2L_16842877_SNP [dm3] 2L_16842877_SNP [dm6]	G	A	3.325e^-4	0.83	UTR_3_PRIME CG13284 DOWNSTREAM SclB & 2 others
3R	17193332	3R_17193332_SNP [dm3] 3R_21367610_SNP [dm6]	G	A	3.331e^-4	0.83	SYNONYMOUS_CODING pre-mod_mdg4_-AD UTR_5_PRIME pre-mod_mdg4_-U & 2 others UTR_3_PRIME pre-mod_mdg4_-AE & 2 others INTRON mod_mdg4_
3L	14565000	3L_14565000_SNP [dm3] 3L_14571900_SNP [dm6]	G	A	3.338e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18690792	X_18690792_SNP [dm3] X_18796759_SNP [dm6]	T	C	3.342e^-4	0.83	UPSTREAM bnb INTRON Pk17E & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8961295	2L_8961295_SNP [dm3] 2L_8961295_SNP [dm6]	T	C	3.353e^-4	0.83	NON_SYNONYMOUS_CODING CG9525	TF binding site mE1_TFBS_HSA
2R	9732812	2R_9732812_SNP [dm3] 2R_13845307_SNP [dm6]	T	C	3.361e^-4	0.83	INTRON Syngr	TF binding site BDTNP1_TFBS_dl
3L	20854265	3L_20854265_INS [dm3] 3L_20861165_INS [dm6]	G	GG	3.363e^-4	0.83	INTRON CG32432
3L	2623707	3L_2623707_SNP [dm3] 3L_2623707_SNP [dm6]	A	C	3.363e^-4	0.83	INTRON Pxn
3L	5386585	3L_5386585_SNP [dm3] 3L_5393485_SNP [dm6]	T	G	3.364e^-4	0.83	INTERGENIC
3L	5386757	3L_5386757_SNP [dm3] 3L_5393657_SNP [dm6]	A	T	3.364e^-4	0.83	INTERGENIC
3L	5386760	3L_5386760_SNP [dm3] 3L_5393660_SNP [dm6]	T	A	3.364e^-4	0.83	INTERGENIC
X	16956668	X_16956668_DEL [dm3] X_17062635_DEL [dm6]	AA	T	3.368e^-4	0.83	INTRON CG45002
X	9686414	X_9686414_SNP [dm3] X_9792381_SNP [dm6]	T	C	3.377e^-4	0.83	INTRON CG32698
X	3319877	X_3319877_SNP [dm3] X_3425844_SNP [dm6]	A	G	3.378e^-4	0.83	INTRON CR44999 & 1 other
3L	5417144	3L_5417144_SNP [dm3] 3L_5424044_SNP [dm6]	T	A	3.388e^-4	0.83	UPSTREAM CG34391 INTERGENIC
X	19749453	X_19749453_SNP [dm3] X_19855420_SNP [dm6]	T	C	3.394e^-4	0.83	SYNONYMOUS_CODING Nup205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15075627	3L_15075627_SNP [dm3] 3L_15082527_SNP [dm6]	A	C	3.394e^-4	0.83	INTRON cp309	TF binding site mE1_TFBS_cad
2R	18005690	2R_18005690_SNP [dm3] 2R_22118185_SNP [dm6]	G	A	3.396e^-4	0.83	INTRON Vrp1
2L	15142842	2L_15142842_SNP [dm3] 2L_15142842_SNP [dm6]	A	T	3.401e^-4	0.83	INTERGENIC
3L	17356083	3L_17356083_SNP [dm3] 3L_17362983_SNP [dm6]	C	T	3.403e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
X	14459691	X_14459691_SNP [dm3] X_14565658_SNP [dm6]	C	T	3.404e^-4	0.83	INTERGENIC
3L	10866905	3L_10866905_SNP [dm3] 3L_10873805_SNP [dm6]	A	T	3.405e^-4	0.83	INTRON tna	TF binding site mE1_TFBS_cad
2L	498122	2L_498122_SNP [dm3] 2L_498122_SNP [dm6]	C	T	3.406e^-4	0.83	INTRON ush
2R	10314493	2R_10314493_MNP [dm3] 2R_14426988_MNP [dm6]	TTA	AGT	3.408e^-4	0.83	DOWNSTREAM phyl INTERGENIC
2R	10314420	2R_10314420_SNP [dm3] 2R_14426915_SNP [dm6]	T	C	3.414e^-4	0.83	DOWNSTREAM phyl INTERGENIC
2L	1678978	2L_1678978_DEL [dm3] 2L_1678978_DEL [dm6]	TTAATTTGGGGAACCCATA...	T	3.414e^-4	0.83	INTRON chinmo
2R	17941182	2R_17941182_SNP [dm3] 2R_22053677_SNP [dm6]	A	T	3.418e^-4	0.83	INTERGENIC
2R	17095160	2R_17095160_SNP [dm3] 2R_21207655_SNP [dm6]	A	C	3.423e^-4	0.83	INTRON CG44245 & 1 other
3L	10614419	3L_10614419_SNP [dm3] 3L_10621319_SNP [dm6]	C	A	3.425e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	15312364	2L_15312364_SNP [dm3] 2L_15312364_SNP [dm6]	C	T	3.427e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	26433518	3R_26433518_SNP [dm3] 3R_30607796_SNP [dm6]	A	T	3.427e^-4	0.83	INTRON CG31016
3R	26432145	3R_26432145_SNP [dm3] 3R_30606423_SNP [dm6]	A	C	3.437e^-4	0.832	DOWNSTREAM PH4alphaNE3 INTRON CG31016
2R	8892107	2R_8892107_SNP [dm3] 2R_13004602_SNP [dm6]	T	C	3.441e^-4	0.832	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8562871	2R_8562871_SNP [dm3] 2R_12675366_SNP [dm6]	A	T	3.447e^-4	0.832	UTR_5_PRIME CG42708 UPSTREAM CG42708 INTRON CG42708
2R	14828679	2R_14828679_SNP [dm3] 2R_18941174_SNP [dm6]	G	C	3.456e^-4	0.833	INTRON sano
X	16956908	X_16956908_SNP [dm3] X_17062875_SNP [dm6]	C	T	3.470e^-4	0.833	INTRON CG45002
3L	17363626	3L_17363626_SNP [dm3] 3L_17370526_SNP [dm6]	T	C	3.472e^-4	0.833	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA
2R	9434007	2R_9434007_SNP [dm3] 2R_13546502_SNP [dm6]	A	G	3.474e^-4	0.833	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	20127567	3R_20127567_SNP [dm3] 3R_24301845_SNP [dm6]	T	G	3.482e^-4	0.833	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10356176	3L_10356176_SNP [dm3] 3L_10363076_SNP [dm6]	G	C	3.483e^-4	0.833	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12758482	2L_12758482_SNP [dm3] 2L_12758482_SNP [dm6]	A	T	3.485e^-4	0.833	INTERGENIC
3L	16830449	3L_16830449_SNP [dm3] 3L_16837349_SNP [dm6]	C	G	3.494e^-4	0.833	INTERGENIC
2R	17095184	2R_17095184_SNP [dm3] 2R_21207679_SNP [dm6]	G	T	3.500e^-4	0.833	INTRON CG44245 & 1 other
X	2611361	X_2611361_SNP [dm3] X_2717328_SNP [dm6]	C	A	3.500e^-4	0.833	UTR_3_PRIME CG2694 DOWNSTREAM CG2701
3L	1964718	3L_1964718_SNP [dm3] 3L_1964718_SNP [dm6]	C	G	3.503e^-4	0.833	UPSTREAM mv INTRON SCOT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	17192711	X_17192711_SNP [dm3] X_17298678_SNP [dm6]	T	C	3.508e^-4	0.833	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10643956	2R_10643956_SNP [dm3] 2R_14756451_SNP [dm6]	C	T	3.508e^-4	0.833	UPSTREAM CG12859 & 1 other DOWNSTREAM Trs31 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12822437	3L_12822437_SNP [dm3] 3L_12829337_SNP [dm6]	C	T	3.516e^-4	0.833	INTRON CG10960
X	16957886	X_16957886_SNP [dm3] X_17063853_SNP [dm6]	C	G	3.520e^-4	0.833	INTRON CG45002
2R	3282248	2R_3282248_SNP [dm3] 2R_7394743_SNP [dm6]	T	G	3.521e^-4	0.833	UPSTREAM CR44201 INTRON CG1707	transposable element FlyBase
3R	14832299	3R_14832299_SNP [dm3] 3R_19006577_SNP [dm6]	A	T	3.526e^-4	0.833	INTRON gukh
X	9384245	X_9384245_SNP [dm3] X_9490212_SNP [dm6]	A	C	3.536e^-4	0.833	INTRON mgl
3L	2026798	3L_2026798_SNP [dm3] 3L_2026798_SNP [dm6]	A	G	3.560e^-4	0.833	UPSTREAM CG34259 INTERGENIC
3R	25156201	3R_25156201_SNP [dm3] 3R_29330479_SNP [dm6]	C	T	3.564e^-4	0.833	INTERGENIC
3R	24974261	3R_24974261_SNP [dm3] 3R_29148539_SNP [dm6]	C	T	3.565e^-4	0.833	SYNONYMOUS_CODING Pglym78 UPSTREAM CG11882	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	938643	2L_938643_SNP [dm3] 2L_938643_SNP [dm6]	C	T	3.572e^-4	0.833	INTRON CG4341
2L	12750738	2L_12750738_SNP [dm3] 2L_12750738_SNP [dm6]	A	G	3.574e^-4	0.833	INTERGENIC
3R	11066620	3R_11066620_SNP [dm3] 3R_15240898_SNP [dm6]	A	G	3.580e^-4	0.833	SYNONYMOUS_CODING tefu
3L	23532163	3L_23532163_SNP [dm3] 3L_23539063_SNP [dm6]	A	C	3.584e^-4	0.833	INTERGENIC
2R	10099449	2R_10099449_SNP [dm3] 2R_14211944_SNP [dm6]	A	G	3.584e^-4	0.833	UTR_5_PRIME Sox15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16994652	2R_16994652_SNP [dm3] 2R_21107147_SNP [dm6]	C	T	3.585e^-4	0.833	INTRON ktub
3R	26091377	3R_26091377_SNP [dm3] 3R_30265655_SNP [dm6]	G	A	3.587e^-4	0.833	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14896182	3R_14896182_SNP [dm3] 3R_19070460_SNP [dm6]	A	G	3.596e^-4	0.833	INTRON cdi
2R	12604439	2R_12604439_SNP [dm3] 2R_16716934_SNP [dm6]	A	C	3.600e^-4	0.833	INTRON CG30463
2R	3274080	2R_3274080_SNP [dm3] 2R_7386575_SNP [dm6]	C	A	3.604e^-4	0.833	SYNONYMOUS_CODING cos UPSTREAM CG11107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8960888	2L_8960888_SNP [dm3] 2L_8960888_SNP [dm6]	A	T	3.605e^-4	0.833	SYNONYMOUS_CODING CG9525
3R	25300965	3R_25300965_SNP [dm3] 3R_29475243_SNP [dm6]	G	A	3.607e^-4	0.833	INTRON Ptp99A
3L	7275845	3L_7275845_SNP [dm3] 3L_7282745_SNP [dm6]	A	C	3.609e^-4	0.833	INTRON unc-13-4A
3L	16830453	3L_16830453_SNP [dm3] 3L_16837353_SNP [dm6]	G	A	3.613e^-4	0.833	INTERGENIC
3R	10220977	3R_10220977_SNP [dm3] 3R_14395255_SNP [dm6]	A	G	3.613e^-4	0.833	SYNONYMOUS_CODING cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16037459	3L_16037459_INS [dm3] 3L_16044359_INS [dm6]	G	GACTG	3.620e^-4	0.833	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	14301861	2L_14301861_SNP [dm3] 2L_14301861_SNP [dm6]	G	A	3.621e^-4	0.833	INTRON wb
3R	4617330	3R_4617330_SNP [dm3] 3R_8791608_SNP [dm6]	T	C	3.646e^-4	0.837	INTRON Pif1A & 1 other	TF binding site mE1_TFBS_sbb
2R	3282272	2R_3282272_SNP [dm3] 2R_7394767_SNP [dm6]	T	A	3.649e^-4	0.837	UPSTREAM CR44201 INTRON CG1707	transposable element FlyBase
X	9985480	X_9985480_SNP [dm3] X_10091447_SNP [dm6]	T	G	3.662e^-4	0.837	INTRON RhoU	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26745777	3R_26745777_SNP [dm3] 3R_30920055_SNP [dm6]	C	A	3.662e^-4	0.837	INTRON Ptx1	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	19569957	3L_19569957_SNP [dm3] 3L_19576857_SNP [dm6]	A	G	3.666e^-4	0.837	INTRON Shal
3R	22794926	3R_22794926_SNP [dm3] 3R_26969204_SNP [dm6]	C	T	3.669e^-4	0.837	INTRON CG5521
2L	15142883	2L_15142883_SNP [dm3] 2L_15142883_SNP [dm6]	C	T	3.673e^-4	0.837	INTERGENIC
2R	9852685	2R_9852685_SNP [dm3] 2R_13965180_SNP [dm6]	C	T	3.675e^-4	0.837	SYNONYMOUS_CODING CG42806 START_GAINED Cp1 UTR_5_PRIME Cp1 INTRON Cp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
2L	16341923	2L_16341923_SNP [dm3] 2L_16341923_SNP [dm6]	T	C	3.675e^-4	0.837	SYNONYMOUS_CODING CG44405 DOWNSTREAM chif & 1 other
3L	14061994	3L_14061994_SNP [dm3] 3L_14068894_SNP [dm6]	T	C	3.697e^-4	0.84	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18920689	2L_18920689_DEL [dm3] 2L_18920689_DEL [dm6]	ATCCCC	A	3.704e^-4	0.841	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	14315652	2L_14315652_SNP [dm3] 2L_14315652_SNP [dm6]	A	C	3.709e^-4	0.841	INTRON wb
X	13996345	X_13996345_SNP [dm3] X_14102312_SNP [dm6]	A	C	3.718e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19573332	2R_19573332_SNP [dm3] 2R_23685809_SNP [dm6]	T	G	3.727e^-4	0.841	UPSTREAM l_2_efl INTRON St3
X	8856980	X_8856980_SNP [dm3] X_8962947_SNP [dm6]	G	T	3.732e^-4	0.841	INTRON rdgA
3R	26496217	3R_26496217_SNP [dm3] 3R_30670495_SNP [dm6]	C	A	3.742e^-4	0.841	INTERGENIC
3L	2384733	3L_2384733_SNP [dm3] 3L_2384733_SNP [dm6]	C	A	3.757e^-4	0.841	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16066465	X_16066465_SNP [dm3] X_16172432_SNP [dm6]	A	T	3.758e^-4	0.841	INTERGENIC
X	4112735	X_4112735_SNP [dm3] X_4218702_SNP [dm6]	C	G	3.763e^-4	0.841	SYNONYMOUS_CODING CG15570	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15694316	2R_15694316_SNP [dm3] 2R_19806811_SNP [dm6]	A	T	3.775e^-4	0.841	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2545208	3L_2545208_SNP [dm3] 3L_2545208_SNP [dm6]	T	G	3.780e^-4	0.841	INTRON Spn
3L	2545224	3L_2545224_SNP [dm3] 3L_2545224_SNP [dm6]	G	T	3.780e^-4	0.841	INTRON Spn
3R	27183877	3R_27183877_SNP [dm3] 3R_31358155_SNP [dm6]	C	T	3.798e^-4	0.841	INTRON CG34347
3L	10644090	3L_10644090_SNP [dm3] 3L_10650990_SNP [dm6]	C	T	3.798e^-4	0.841	INTRON CG32066
2L	8987863	2L_8987863_SNP [dm3] 2L_8987863_SNP [dm6]	G	A	3.805e^-4	0.841	INTRON rost
2L	8846133	2L_8846133_SNP [dm3] 2L_8846133_SNP [dm6]	T	C	3.805e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20853498	3R_20853498_SNP [dm3] 3R_25027776_SNP [dm6]	C	T	3.806e^-4	0.841	INTRON Hr96
2L	17141584	2L_17141584_SNP [dm3] 2L_17141584_SNP [dm6]	G	A	3.810e^-4	0.841	INTRON beat-IIIa & 1 other
2R	6357382	2R_6357382_SNP [dm3] 2R_10469877_SNP [dm6]	G	A	3.812e^-4	0.841	SYNONYMOUS_CODING whd DOWNSTREAM CG11777
3R	16674839	3R_16674839_SNP [dm3] 3R_20849117_SNP [dm6]	T	C	3.816e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9806476	2R_9806476_SNP [dm3] 2R_13918971_SNP [dm6]	G	T	3.816e^-4	0.841	INTRON shot	TF binding site mE1_TFBS_Trl
2L	5101553	2L_5101553_SNP [dm3] 2L_5101553_SNP [dm6]	T	C	3.819e^-4	0.841	INTRON Msp300
2R	14706733	2R_14706733_SNP [dm3] 2R_18819228_SNP [dm6]	C	T	3.820e^-4	0.841	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12674261	3L_12674261_DEL [dm3] 3L_12681161_DEL [dm6]	AGGCTATCGTAT...	A	3.826e^-4	0.841	INTERGENIC
2L	19295574	2L_19295574_SNP [dm3] 2L_19295574_SNP [dm6]	C	A	3.829e^-4	0.841	INTERGENIC
3L	2794879	3L_2794879_SNP [dm3] 3L_2794879_SNP [dm6]	A	G	3.829e^-4	0.841	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17780258	2R_17780258_DEL [dm3] 2R_21892753_DEL [dm6]	AA	A	3.832e^-4	0.841	INTRON Fili
X	9502964	X_9502964_SNP [dm3] X_9608931_SNP [dm6]	G	A	3.833e^-4	0.841	UPSTREAM CG42797 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	25301300	3R_25301300_INS [dm3] 3R_29475578_INS [dm6]	A	ATA	3.835e^-4	0.841	INTRON Ptp99A
X	14276595	X_14276595_SNP [dm3] X_14382562_SNP [dm6]	T	C	3.836e^-4	0.841	INTRON dpr8
2L	10523772	2L_10523772_SNP [dm3] 2L_10523772_SNP [dm6]	A	T	3.850e^-4	0.844	INTERGENIC
X	3458354	X_3458354_SNP [dm3] X_3564321_SNP [dm6]	G	A	3.857e^-4	0.844	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14301703	2L_14301703_SNP [dm3] 2L_14301703_SNP [dm6]	A	T	3.878e^-4	0.846	START_GAINED wb UTR_5_PRIME wb INTRON wb
3R	16561972	3R_16561972_SNP [dm3] 3R_20736250_SNP [dm6]	T	C	3.885e^-4	0.846	SYNONYMOUS_CODING cdc2c DOWNSTREAM CR42786 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	2948376	2L_2948376_SNP [dm3] 2L_2948376_SNP [dm6]	C	T	3.899e^-4	0.846	SYNONYMOUS_CODING lilli
X	16876145	X_16876145_SNP [dm3] X_16982112_SNP [dm6]	T	C	3.900e^-4	0.846	INTRON CG45002
2R	17756105	2R_17756105_SNP [dm3] 2R_21868600_SNP [dm6]	G	A	3.902e^-4	0.846	INTERGENIC
3L	4745359	3L_4745359_SNP [dm3] 3L_4745359_SNP [dm6]	T	A	3.906e^-4	0.846	DOWNSTREAM CR43882 INTRON RhoGEF64C
3R	14611969	3R_14611969_SNP [dm3] 3R_18786247_SNP [dm6]	C	T	3.907e^-4	0.846	INTRON CG7720
2R	17782998	2R_17782998_SNP [dm3] 2R_21895493_SNP [dm6]	C	A	3.919e^-4	0.846	INTRON Fili
3L	7154297	3L_7154297_SNP [dm3] 3L_7161197_SNP [dm6]	T	G	3.926e^-4	0.846	UTR_3_PRIME Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7154304	3L_7154304_SNP [dm3] 3L_7161204_SNP [dm6]	T	A	3.926e^-4	0.846	UTR_3_PRIME Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7231487	X_7231487_SNP [dm3] X_7337454_SNP [dm6]	G	C	3.926e^-4	0.846	UTR_5_PRIME CBP UPSTREAM CBP INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	18387264	2L_18387264_SNP [dm3] 2L_18387264_SNP [dm6]	A	C	3.928e^-4	0.846	DOWNSTREAM Fas3 INTRON Fas3
2R	19143662	2R_19143662_DEL [dm3] 2R_23256139_DEL [dm6]	TT	T	3.930e^-4	0.846	INTERGENIC
3R	4366809	3R_4366809_DEL [dm3] 3R_8541087_DEL [dm6]	AACCAAGTA	A	3.941e^-4	0.846	INTERGENIC
3L	11946873	3L_11946873_DEL [dm3] 3L_11953773_DEL [dm6]	ATCT	A	3.942e^-4	0.846	UPSTREAM CG7248 & 1 other INTERGENIC
X	14459666	X_14459666_SNP [dm3] X_14565633_SNP [dm6]	T	A	3.944e^-4	0.846	INTERGENIC
2R	17392075	2R_17392075_SNP [dm3] 2R_21504570_SNP [dm6]	C	T	3.952e^-4	0.846	INTRON MESK2	TF binding site mE1_TFBS_inv
2R	2721762	2R_2721762_SNP [dm3] 2R_6834257_SNP [dm6]	G	A	3.952e^-4	0.846	SYNONYMOUS_CODING CG15236	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3129824	2L_3129824_SNP [dm3] 2L_3129824_SNP [dm6]	T	C	3.953e^-4	0.846	DOWNSTREAM CG15403 INTRON toc
3R	27173844	3R_27173844_SNP [dm3] 3R_31348122_SNP [dm6]	T	G	3.969e^-4	0.848	INTRON CG34347
X	15573406	X_15573406_SNP [dm3] X_15679373_SNP [dm6]	T	A	3.975e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4159923	3L_4159923_SNP [dm3] 3L_4159923_SNP [dm6]	A	G	3.977e^-4	0.848	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	11816369	X_11816369_SNP [dm3] X_11922336_SNP [dm6]	C	T	3.980e^-4	0.848	SYNONYMOUS_CODING Sclp
2L	15142913	2L_15142913_SNP [dm3] 2L_15142913_SNP [dm6]	T	A	3.987e^-4	0.849	INTERGENIC
3R	13418971	3R_13418971_SNP [dm3] 3R_17593249_SNP [dm6]	T	A	4.002e^-4	0.851	INTERGENIC
2L	4754611	2L_4754611_SNP [dm3] 2L_4754611_SNP [dm6]	G	A	4.016e^-4	0.852	INTRON CG15630
X	4507317	X_4507317_SNP [dm3] X_4613284_SNP [dm6]	C	T	4.017e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16897772	X_16897772_SNP [dm3] X_17003739_SNP [dm6]	G	A	4.030e^-4	0.852	INTRON CG45002
2L	5846236	2L_5846236_SNP [dm3] 2L_5846236_SNP [dm6]	C	T	4.034e^-4	0.852	INTRON TrissinR
2L	7085463	2L_7085463_SNP [dm3] 2L_7085463_SNP [dm6]	A	T	4.035e^-4	0.852	UPSTREAM Pvf2 INTERGENIC
3R	9841742	3R_9841742_SNP [dm3] 3R_14016020_SNP [dm6]	A	C	4.037e^-4	0.852	INTRON rdx
2L	20843173	2L_20843173_SNP [dm3] 2L_20843173_SNP [dm6]	C	A	4.040e^-4	0.852	INTRON CG31676
2R	6670582	2R_6670582_SNP [dm3] 2R_10783077_SNP [dm6]	A	T	4.046e^-4	0.853	UPSTREAM CG33144 INTRON CG33144 EXON CR44299	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13833145	3R_13833145_SNP [dm3] 3R_18007423_SNP [dm6]	G	A	4.052e^-4	0.853	INTRON cpo	TF binding site BDTNP1_TFBS_dl
2R	17291668	2R_17291668_SNP [dm3] 2R_21404163_SNP [dm6]	C	G	4.057e^-4	0.853	INTRON Sdc
3R	22074066	3R_22074066_SNP [dm3] 3R_26248344_SNP [dm6]	A	G	4.073e^-4	0.854	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	18419698	2L_18419698_SNP [dm3] 2L_18419698_SNP [dm6]	A	C	4.083e^-4	0.854	INTERGENIC
X	5947312	X_5947312_SNP [dm3] X_6053279_SNP [dm6]	C	A	4.095e^-4	0.854	INTRON CG5921
2L	10821171	2L_10821171_SNP [dm3] 2L_10821171_SNP [dm6]	T	G	4.098e^-4	0.854	NON_SYNONYMOUS_CODING CG17134 DOWNSTREAM CG6508 INTRON Nos
3L	3276469	3L_3276469_SNP [dm3] 3L_3276469_SNP [dm6]	G	A	4.100e^-4	0.854	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	498222	3R_498222_SNP [dm3] 3R_4672500_SNP [dm6]	A	T	4.101e^-4	0.854	INTRON CG43427
2L	8968391	2L_8968391_INS [dm3] 2L_8968391_INS [dm6]	A	ACATATTTATATAGATA...	4.101e^-4	0.854	INTRON CG18088
3L	9004959	3L_9004959_SNP [dm3] 3L_9011859_SNP [dm6]	T	A	4.102e^-4	0.854	DOWNSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3L	11879465	3L_11879465_SNP [dm3] 3L_11886365_SNP [dm6]	G	T	4.105e^-4	0.854	DOWNSTREAM CG5897 INTRON CG44837
2L	21690	2L_21690_SNP [dm3] 2L_21690_SNP [dm6]	T	C	4.106e^-4	0.854	UPSTREAM CR43609 & 1 other DOWNSTREAM Ir21a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12674244	3L_12674244_SNP [dm3] 3L_12681144_SNP [dm6]	T	A	4.126e^-4	0.855	INTERGENIC
2L	21075621	2L_21075621_SNP [dm3] 2L_21075621_SNP [dm6]	G	A	4.129e^-4	0.855	UTR_5_PRIME tadr
3R	18046752	3R_18046752_SNP [dm3] 3R_22221030_SNP [dm6]	G	T	4.130e^-4	0.855	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19756388	X_19756388_SNP [dm3] X_19862355_SNP [dm6]	G	C	4.133e^-4	0.855	NON_SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14828697	2R_14828697_SNP [dm3] 2R_18941192_SNP [dm6]	T	C	4.136e^-4	0.855	INTRON sano
3L	16765807	3L_16765807_SNP [dm3] 3L_16772707_SNP [dm6]	G	T	4.139e^-4	0.855	UPSTREAM Nrt INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi
2L	22016564	2L_22016564_SNP [dm3] 2L_22016564_SNP [dm6]	G	T	4.147e^-4	0.855	NON_SYNONYMOUS_CODING CG31693	TF binding site mE1_TFBS_sens
X	3319875	X_3319875_SNP [dm3] X_3425842_SNP [dm6]	G	T	4.149e^-4	0.855	INTRON CR44999 & 1 other
2L	636635	2L_636635_SNP [dm3] 2L_636635_SNP [dm6]	G	A	4.163e^-4	0.857	INTERGENIC
2L	10841664	2L_10841664_INS [dm3] 2L_10841664_INS [dm6]	T	ATGTTGTTGTTGTTGATGC...	4.169e^-4	0.857		TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	4897291	3R_4897291_SNP [dm3] 3R_9071569_SNP [dm6]	A	G	4.174e^-4	0.857	SYNONYMOUS_CODING pum	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8796170	3L_8796170_SNP [dm3] 3L_8803070_SNP [dm6]	A	T	4.186e^-4	0.857	SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023
2L	1673559	2L_1673559_SNP [dm3] 2L_1673559_SNP [dm6]	T	C	4.187e^-4	0.857	INTRON chinmo
2R	7488701	2R_7488701_SNP [dm3] 2R_11601196_SNP [dm6]	T	A	4.194e^-4	0.857	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9433994	2R_9433994_SNP [dm3] 2R_13546489_SNP [dm6]	G	A	4.198e^-4	0.857	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
X	16066613	X_16066613_SNP [dm3] X_16172580_SNP [dm6]	A	G	4.199e^-4	0.857	INTERGENIC
2R	6503395	2R_6503395_SNP [dm3] 2R_10615890_SNP [dm6]	T	A	4.200e^-4	0.857	UTR_3_PRIME psq
3R	18614701	3R_18614701_SNP [dm3] 3R_22788979_SNP [dm6]	T	C	4.203e^-4	0.857	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8055159	X_8055159_SNP [dm3] X_8161126_SNP [dm6]	A	G	4.214e^-4	0.858	SYNONYMOUS_CODING CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo
3R	11267317	3R_11267317_SNP [dm3] 3R_15441595_SNP [dm6]	C	A	4.218e^-4	0.858	DOWNSTREAM AdamTS-A INTRON Act88F	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	374311	2L_374311_SNP [dm3] 2L_374311_SNP [dm6]	C	T	4.223e^-4	0.858	INTERGENIC
X	3000672	X_3000672_SNP [dm3] X_3106639_SNP [dm6]	C	T	4.229e^-4	0.858	INTRON kirre
2R	13801945	2R_13801945_SNP [dm3] 2R_17914440_SNP [dm6]	A	T	4.239e^-4	0.859	INTRON Elk
2R	16897176	2R_16897176_SNP [dm3] 2R_21009671_SNP [dm6]	C	T	4.255e^-4	0.86	UPSTREAM CG30291 DOWNSTREAM grau INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1679018	2L_1679018_SNP [dm3] 2L_1679018_SNP [dm6]	T	C	4.258e^-4	0.86	INTRON chinmo
2R	10232164	2R_10232164_SNP [dm3] 2R_14344659_SNP [dm6]	T	C	4.258e^-4	0.86	INTRON Shroom
3L	14209856	3L_14209856_SNP [dm3] 3L_14216756_SNP [dm6]	T	C	4.266e^-4	0.86	INTRON nuf
X	11813881	X_11813881_SNP [dm3] X_11919848_SNP [dm6]	A	C	4.272e^-4	0.86	UPSTREAM CR43157 DOWNSTREAM Sclp & 1 other INTERGENIC
2L	9076781	2L_9076781_SNP [dm3] 2L_9076781_SNP [dm6]	A	G	4.287e^-4	0.86	UPSTREAM CG12439 INTERGENIC
2L	16815760	2L_16815760_SNP [dm3] 2L_16815760_SNP [dm6]	G	T	4.296e^-4	0.86	NON_SYNONYMOUS_CODING CG13272 UPSTREAM mdy INTRON CG13280	TF binding site mE1_TFBS_bab1 mE1_TFBS_Kr mE1_TFBS_sens
2L	5620659	2L_5620659_SNP [dm3] 2L_5620659_SNP [dm6]	A	C	4.299e^-4	0.86	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
2L	5620663	2L_5620663_DEL [dm3] 2L_5620663_DEL [dm6]	AATTT	A	4.299e^-4	0.86	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
X	10447743	X_10447743_SNP [dm3] X_10553710_SNP [dm6]	C	A	4.300e^-4	0.86	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	4464429	2R_4464429_SNP [dm3] 2R_8576924_SNP [dm6]	A	G	4.304e^-4	0.86	SYNONYMOUS_CODING CG42326	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7788825	3R_7788825_SNP [dm3] 3R_11963103_SNP [dm6]	A	C	4.316e^-4	0.86	UPSTREAM aur & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	20783953	2L_20783953_SNP [dm3] 2L_20783953_SNP [dm6]	G	T	4.320e^-4	0.86	DOWNSTREAM cad INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14604317	3R_14604317_SNP [dm3] 3R_18778595_SNP [dm6]	G	C	4.322e^-4	0.86	INTRON CG7720
X	14286591	X_14286591_SNP [dm3] X_14392558_SNP [dm6]	T	C	4.325e^-4	0.86	INTRON dpr8
2L	15142894	2L_15142894_SNP [dm3] 2L_15142894_SNP [dm6]	C	A	4.326e^-4	0.86	INTERGENIC
2L	15142897	2L_15142897_SNP [dm3] 2L_15142897_SNP [dm6]	A	T	4.326e^-4	0.86	INTERGENIC
2L	3129752	2L_3129752_SNP [dm3] 2L_3129752_SNP [dm6]	G	A	4.340e^-4	0.86	DOWNSTREAM CG15403 INTRON toc
2R	9638486	2R_9638486_SNP [dm3] 2R_13750981_SNP [dm6]	A	G	4.341e^-4	0.86	INTERGENIC
X	12886554	X_12886554_SNP [dm3] X_12992521_SNP [dm6]	T	C	4.343e^-4	0.86	INTRON rad
3R	11852610	3R_11852610_SNP [dm3] 3R_16026888_SNP [dm6]	A	C	4.350e^-4	0.86	INTRON pnr	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
2R	17771837	2R_17771837_SNP [dm3] 2R_21884332_SNP [dm6]	T	A	4.359e^-4	0.86	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16682935	2R_16682935_SNP [dm3] 2R_20795430_SNP [dm6]	G	A	4.363e^-4	0.86	INTERGENIC
3L	15075556	3L_15075556_SNP [dm3] 3L_15082456_SNP [dm6]	C	T	4.370e^-4	0.86	SYNONYMOUS_CODING cp309
3L	2026795	3L_2026795_SNP [dm3] 3L_2026795_SNP [dm6]	C	A	4.385e^-4	0.86	UPSTREAM CG34259 INTERGENIC
2L	5105896	2L_5105896_SNP [dm3] 2L_5105896_SNP [dm6]	T	C	4.385e^-4	0.86	INTRON Msp300
3L	1332254	3L_1332254_SNP [dm3] 3L_1332254_SNP [dm6]	C	T	4.388e^-4	0.86	UTR_3_PRIME msd1 DOWNSTREAM msd5 & 2 others
3L	1332260	3L_1332260_SNP [dm3] 3L_1332260_SNP [dm6]	C	T	4.388e^-4	0.86	UTR_3_PRIME msd1 DOWNSTREAM msd5 & 2 others
3L	1333255	3L_1333255_SNP [dm3] 3L_1333255_SNP [dm6]	T	G	4.388e^-4	0.86	UTR_3_PRIME CG2211 UPSTREAM msd5 DOWNSTREAM msd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19707489	2R_19707489_SNP [dm3] 2R_23819966_SNP [dm6]	A	G	4.399e^-4	0.86	UPSTREAM CG5549 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16843014	2R_16843014_SNP [dm3] 2R_20955509_SNP [dm6]	A	G	4.400e^-4	0.86	INTRON hbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17274779	2R_17274779_SNP [dm3] 2R_21387274_SNP [dm6]	G	C	4.400e^-4	0.86	SYNONYMOUS_CODING Acox57D-p	TF binding site mE1_TFBS_sens
2R	10314404	2R_10314404_SNP [dm3] 2R_14426899_SNP [dm6]	A	G	4.406e^-4	0.86	DOWNSTREAM phyl INTERGENIC
3R	12235957	3R_12235957_SNP [dm3] 3R_16410235_SNP [dm6]	T	G	4.410e^-4	0.86	INTERGENIC
3R	10031356	3R_10031356_SNP [dm3] 3R_14205634_SNP [dm6]	A	C	4.417e^-4	0.86	INTRON Dop1R1
3R	21412650	3R_21412650_DEL [dm3] 3R_25586928_DEL [dm6]	CCC	C	4.418e^-4	0.86	INTRON msi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19262694	3R_19262694_SNP [dm3] 3R_23436972_SNP [dm6]	C	T	4.429e^-4	0.86	INTRON CG4374
2R	9803847	2R_9803847_SNP [dm3] 2R_13916342_SNP [dm6]	C	T	4.430e^-4	0.86	INTRON shot
X	3524380	X_3524380_SNP [dm3] X_3630347_SNP [dm6]	A	G	4.445e^-4	0.86	INTRON AstA-R1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20713051	2L_20713051_SNP [dm3] 2L_20713051_SNP [dm6]	G	A	4.452e^-4	0.86	NON_SYNONYMOUS_CODING Hr38 DOWNSTREAM CR44188 INTRON Hr38
3R	9057694	3R_9057694_SNP [dm3] 3R_13231972_SNP [dm6]	T	A	4.453e^-4	0.86	INTRON Ace
2L	8502675	2L_8502675_SNP [dm3] 2L_8502675_SNP [dm6]	A	C	4.454e^-4	0.86	INTRON Dh31
2L	7121442	2L_7121442_DEL [dm3] 2L_7121442_DEL [dm6]	TT	T	4.454e^-4	0.86	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11409321	3L_11409321_SNP [dm3] 3L_11416221_SNP [dm6]	C	A	4.456e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12671180	3L_12671180_SNP [dm3] 3L_12678080_SNP [dm6]	T	C	4.458e^-4	0.86	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19492624	2R_19492624_SNP [dm3] 2R_23605101_SNP [dm6]	C	A	4.467e^-4	0.86	UTR_5_PRIME CG17664 DOWNSTREAM CG17662 INTRON CG17664	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5611293	3L_5611293_SNP [dm3] 3L_5618193_SNP [dm6]	G	T	4.469e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	3882191	3L_3882191_SNP [dm3] 3L_3882191_SNP [dm6]	A	C	4.472e^-4	0.86	INTERGENIC
2L	10588250	2L_10588250_SNP [dm3] 2L_10588250_SNP [dm6]	A	G	4.473e^-4	0.86	INTRON Trim9
2L	1648575	2L_1648575_SNP [dm3] 2L_1648575_SNP [dm6]	A	C	4.473e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1267680	3L_1267680_SNP [dm3] 3L_1267680_SNP [dm6]	A	G	4.474e^-4	0.86	INTRON CG9134
2L	16804642	2L_16804642_SNP [dm3] 2L_16804642_SNP [dm6]	T	A	4.481e^-4	0.86	UPSTREAM CG13272 & 1 other INTRON CG13280
3L	14438471	3L_14438471_SNP [dm3] 3L_14445371_SNP [dm6]	T	A	4.488e^-4	0.86	INTRON bbg	TF binding site mE1_TFBS_inv
3R	26087735	3R_26087735_SNP [dm3] 3R_30262013_SNP [dm6]	G	T	4.505e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	22087709	3R_22087709_DEL [dm3] 3R_26261987_DEL [dm6]	TTT	AA	4.505e^-4	0.862	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	17777532	3R_17777532_DEL [dm3] 3R_21951810_DEL [dm6]	TTTAT	T	4.520e^-4	0.863	INTRON Eip93F	TF binding site mE1_TFBS_cad
2L	1675936	2L_1675936_SNP [dm3] 2L_1675936_SNP [dm6]	C	T	4.521e^-4	0.863	INTRON chinmo
2R	19573328	2R_19573328_SNP [dm3] 2R_23685805_SNP [dm6]	A	T	4.528e^-4	0.863	UPSTREAM l_2_efl INTRON St3
2R	13546162	2R_13546162_SNP [dm3] 2R_17658657_SNP [dm6]	G	A	4.532e^-4	0.863	INTRON CCHa1-R
2L	17319450	2L_17319450_SNP [dm3] 2L_17319450_SNP [dm6]	T	C	4.535e^-4	0.863	UPSTREAM CR45696 DOWNSTREAM CG45691 INTERGENIC
3L	17366351	3L_17366351_SNP [dm3] 3L_17373251_SNP [dm6]	C	T	4.552e^-4	0.865	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5796937	3R_5796937_DEL [dm3] 3R_9971215_DEL [dm6]	GG	G	4.564e^-4	0.865	INTRON Glut4EF
3L	2026846	3L_2026846_SNP [dm3] 3L_2026846_SNP [dm6]	T	A	4.568e^-4	0.865	UPSTREAM CG34259 INTERGENIC
3L	20766270	3L_20766270_SNP [dm3] 3L_20773170_SNP [dm6]	C	A	4.568e^-4	0.865	UTR_5_PRIME Pitslre INTRON Pitslre
3L	10840957	3L_10840957_SNP [dm3] 3L_10847857_SNP [dm6]	T	C	4.570e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18513895	2L_18513895_SNP [dm3] 2L_18513895_SNP [dm6]	A	G	4.573e^-4	0.865	DOWNSTREAM CG10178 INTERGENIC
3L	5607436	3L_5607436_INS [dm3] 3L_5614336_INS [dm6]	A	AT	4.577e^-4	0.865	INTERGENIC
X	2920684	X_2920684_SNP [dm3] X_3026651_SNP [dm6]	C	T	4.588e^-4	0.865	INTRON kirre	TF binding site BDTNP1_TFBS_dl
3L	3999156	3L_3999156_SNP [dm3] 3L_3999156_SNP [dm6]	C	T	4.589e^-4	0.865	INTERGENIC
2L	6506337	2L_6506337_SNP [dm3] 2L_6506337_SNP [dm6]	G	A	4.603e^-4	0.865	INTRON CG31637
3L	11486590	3L_11486590_SNP [dm3] 3L_11493490_SNP [dm6]	C	T	4.608e^-4	0.865	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13759568	2R_13759568_SNP [dm3] 2R_17872063_SNP [dm6]	T	A	4.610e^-4	0.865	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2L	8985080	2L_8985080_SNP [dm3] 2L_8985080_SNP [dm6]	T	A	4.615e^-4	0.865	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	21073692	2L_21073692_SNP [dm3] 2L_21073692_SNP [dm6]	A	G	4.616e^-4	0.865	INTERGENIC
3R	24767364	3R_24767364_SNP [dm3] 3R_28941642_SNP [dm6]	C	T	4.620e^-4	0.865	INTRON CG14521
3R	25282939	3R_25282939_SNP [dm3] 3R_29457217_SNP [dm6]	C	T	4.623e^-4	0.865	UPSTREAM Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

mn_Week7_Fecundity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results