DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.308e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2310 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	16036130	3L_16036130_SNP [dm3] 3L_16043030_SNP [dm6]	C	T	1.348e^-6	0.804	UTR_5_PRIME th UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv
3R	14345445	3R_14345445_SNP [dm3] 3R_18519723_SNP [dm6]	T	A	2.710e^-6	0.804	INTRON fru
3R	19649763	3R_19649763_INS [dm3] 3R_23824041_INS [dm6]	T	TGT	2.943e^-6	0.804	INTRON CG34355
3R	14345446	3R_14345446_SNP [dm3] 3R_18519724_SNP [dm6]	T	G	3.477e^-6	0.804	INTRON fru
2R	12604439	2R_12604439_SNP [dm3] 2R_16716934_SNP [dm6]	A	C	3.544e^-6	0.804	INTRON CG30463
3R	11652848	3R_11652848_SNP [dm3] 3R_15827126_SNP [dm6]	T	G	3.926e^-6	0.804	SYNONYMOUS_CODING CG4576 INTRON rec
2R	14808373	2R_14808373_SNP [dm3] 2R_18920868_SNP [dm6]	C	T	4.051e^-6	0.804	INTRON sano
3L	19590381	3L_19590381_SNP [dm3] 3L_19597281_SNP [dm6]	T	A	4.232e^-6	0.804	SYNONYMOUS_CODING ash1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23964494	3R_23964494_SNP [dm3] 3R_28138772_SNP [dm6]	G	T	4.376e^-6	0.804	INTERGENIC
3L	5997712	3L_5997712_SNP [dm3] 3L_6004612_SNP [dm6]	C	T	4.428e^-6	0.804	INTRON PVRAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	27135735	3R_27135735_SNP [dm3] 3R_31310013_SNP [dm6]	A	C	5.046e^-6	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8636367	3L_8636367_SNP [dm3] 3L_8643267_SNP [dm6]	G	A	5.842e^-6	0.804	SYNONYMOUS_CODING Cpr66D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	5709091	2L_5709091_SNP [dm3] 2L_5709091_SNP [dm6]	G	A	6.748e^-6	0.804	UPSTREAM CG7236 INTRON CG7236
3R	24430474	3R_24430474_SNP [dm3] 3R_28604752_SNP [dm6]	A	G	6.990e^-6	0.804	UTR_3_PRIME Hrb98DE INTRON Hrb98DE
X	15570203	X_15570203_SNP [dm3] X_15676170_SNP [dm6]	C	G	7.092e^-6	0.804	INTRON CG12708
2L	5709074	2L_5709074_SNP [dm3] 2L_5709074_SNP [dm6]	A	G	7.273e^-6	0.804	UPSTREAM CG7236 INTRON CG7236
3L	9341302	3L_9341302_SNP [dm3] 3L_9348202_SNP [dm6]	T	G	8.301e^-6	0.804	UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
3R	19216311	3R_19216311_SNP [dm3] 3R_23390589_SNP [dm6]	G	T	9.496e^-6	0.804	DOWNSTREAM CR43387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14752901	2R_14752901_SNP [dm3] 2R_18865396_SNP [dm6]	C	G	1.071e^-5	0.804	UPSTREAM Dpt & 1 other DOWNSTREAM CG43070 INTERGENIC
3R	19649746	3R_19649746_SNP [dm3] 3R_23824024_SNP [dm6]	T	C	1.097e^-5	0.804	INTRON CG34355
2R	16744235	2R_16744235_SNP [dm3] 2R_20856730_SNP [dm6]	G	T	1.130e^-5	0.804	INTERGENIC
2R	2718726	2R_2718726_SNP [dm3] 2R_6831221_SNP [dm6]	C	T	1.148e^-5	0.804	DOWNSTREAM CG34215 INTRON CG15236
X	16185356	X_16185356_SNP [dm3] X_16291323_SNP [dm6]	G	T	1.206e^-5	0.804	INTRON caz
3R	27135758	3R_27135758_INS [dm3] 3R_31310036_INS [dm6]	A	ACTGCTGCG	1.206e^-5	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5998197	3L_5998197_SNP [dm3] 3L_6005097_SNP [dm6]	C	A	1.249e^-5	0.804	INTRON PVRAP	TF binding site mE1_TFBS_cad
2L	16778469	2L_16778469_SNP [dm3] 2L_16778469_SNP [dm6]	G	T	1.255e^-5	0.804	NON_SYNONYMOUS_CODING Mhc INTRON Mhc
3R	24427450	3R_24427450_SNP [dm3] 3R_28601728_SNP [dm6]	A	T	1.347e^-5	0.804	UPSTREAM snoRNA:Psi28S-3405b & 3 others DOWNSTREAM snoRNA:Psi28S-3405a INTRON Hrb98DE EXON snoRNA:Psi28S-3305a
2R	18225467	2R_18225467_SNP [dm3] 2R_22337962_SNP [dm6]	G	T	1.425e^-5	0.804	INTRON Liprin-gamma
3L	10357987	3L_10357987_SNP [dm3] 3L_10364887_SNP [dm6]	A	T	1.438e^-5	0.804	UPSTREAM mir-276a EXON CR44327
2L	5974062	2L_5974062_SNP [dm3] 2L_5974062_SNP [dm6]	A	T	1.474e^-5	0.804	INTRON chic
2L	9950539	2L_9950539_SNP [dm3] 2L_9950539_SNP [dm6]	G	C	1.669e^-5	0.804	UPSTREAM mir-87 INTERGENIC
2R	16744236	2R_16744236_DEL [dm3] 2R_20856731_DEL [dm6]	GG	G	1.750e^-5	0.804	INTERGENIC
3R	18324842	3R_18324842_INS [dm3] 3R_22499120_INS [dm6]	C	CC	1.801e^-5	0.804	INTRON Octbeta1R
2R	1078372	2R_1078372_SNP [dm3] 2R_5190867_SNP [dm6]	C	A	1.843e^-5	0.804	INTRON Nipped-A	transposable element FlyBase
3R	23964492	3R_23964492_SNP [dm3] 3R_28138770_SNP [dm6]	T	A	1.870e^-5	0.804	INTERGENIC
3R	23926119	3R_23926119_SNP [dm3] 3R_28100397_SNP [dm6]	C	A	1.872e^-5	0.804	INTERGENIC
3L	12544228	3L_12544228_SNP [dm3] 3L_12551128_SNP [dm6]	G	C	2.047e^-5	0.804	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	7125274	2L_7125274_SNP [dm3] 2L_7125274_SNP [dm6]	G	A	2.058e^-5	0.804	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26667352	3R_26667352_SNP [dm3] 3R_30841630_SNP [dm6]	T	A	2.125e^-5	0.804	UTR_3_PRIME CG15544
2L	16778306	2L_16778306_SNP [dm3] 2L_16778306_SNP [dm6]	T	G	2.317e^-5	0.804	INTRON Mhc
3R	8431661	3R_8431661_SNP [dm3] 3R_12605939_SNP [dm6]	A	T	2.324e^-5	0.804	INTERGENIC
3L	12283172	3L_12283172_SNP [dm3] 3L_12290072_SNP [dm6]	A	G	2.333e^-5	0.804	DOWNSTREAM CG4328 EXON CR45658	TF binding site BDTNP1_TFBS_prd
2R	17442555	2R_17442555_SNP [dm3] 2R_21555050_SNP [dm6]	C	A	2.365e^-5	0.804	SPLICE_SITE_REGION Egfr SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_HSA
2L	16778314	2L_16778314_SNP [dm3] 2L_16778314_SNP [dm6]	T	C	2.397e^-5	0.804	INTRON Mhc
2L	9706768	2L_9706768_SNP [dm3] 2L_9706768_SNP [dm6]	A	T	2.423e^-5	0.804	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	17260722	2R_17260722_SNP [dm3] 2R_21373217_SNP [dm6]	T	C	2.534e^-5	0.804	INTRON cv-2	TF binding site BDTNP1_TFBS_twi
2R	14695808	2R_14695808_SNP [dm3] 2R_18808303_SNP [dm6]	C	T	2.603e^-5	0.804	DOWNSTREAM CG15096 INTERGENIC
3R	27135746	3R_27135746_SNP [dm3] 3R_31310024_SNP [dm6]	G	C	2.733e^-5	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10968631	X_10968631_SNP [dm3] X_11074598_SNP [dm6]	G	A	2.881e^-5	0.804	SYNONYMOUS_CODING sev	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19874939	3L_19874939_SNP [dm3] 3L_19881839_SNP [dm6]	C	T	2.885e^-5	0.804	DOWNSTREAM Mi-2 & 1 other INTERGENIC
3R	13443823	3R_13443823_SNP [dm3] 3R_17618101_SNP [dm6]	A	C	2.919e^-5	0.804	UPSTREAM CG14326 DOWNSTREAM tRNA:P:90Ca & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10432767	3L_10432767_INS [dm3] 3L_10439667_INS [dm6]	A	AA	3.103e^-5	0.804	INTERGENIC
2L	5243998	2L_5243998_SNP [dm3] 2L_5243998_SNP [dm6]	T	C	3.106e^-5	0.804	SYNONYMOUS_CODING tkv INTRON tkv EXON CR14033
2R	14695767	2R_14695767_SNP [dm3] 2R_18808262_SNP [dm6]	C	T	3.175e^-5	0.804	DOWNSTREAM CG15096 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	27139119	3R_27139119_SNP [dm3] 3R_31313397_SNP [dm6]	C	A	3.181e^-5	0.804	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5401020	2R_5401020_SNP [dm3] 2R_9513515_SNP [dm6]	A	G	3.196e^-5	0.804	INTRON brp
X	15665822	X_15665822_SNP [dm3] X_15771789_SNP [dm6]	G	A	3.325e^-5	0.804	SYNONYMOUS_CODING CG33172	TF binding site mE1_TFBS_sens
3R	12031709	3R_12031709_SNP [dm3] 3R_16205987_SNP [dm6]	T	C	3.377e^-5	0.804	UPSTREAM mtSSB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	14450334	2R_14450334_SNP [dm3] 2R_18562829_SNP [dm6]	T	C	3.405e^-5	0.804	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11373190	2R_11373190_SNP [dm3] 2R_15485685_SNP [dm6]	A	T	3.443e^-5	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	20612452	X_20612452_SNP [dm3] X_20741425_SNP [dm6]	C	A	3.519e^-5	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	20612692	X_20612692_SNP [dm3] X_20741665_SNP [dm6]	T	C	3.533e^-5	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	10360567	3L_10360567_DEL [dm3] 3L_10367467_DEL [dm6]	AAGCATAATTA...	A	3.556e^-5	0.804	DOWNSTREAM CR44327 INTERGENIC
X	6952669	X_6952669_DEL [dm3] X_7058636_DEL [dm6]	TGACCTATGGGCATACA...	T	3.563e^-5	0.804	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	14834015	3R_14834015_SNP [dm3] 3R_19008293_SNP [dm6]	G	A	3.802e^-5	0.804	INTRON gukh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13976881	3R_13976881_SNP [dm3] 3R_18151159_SNP [dm6]	A	G	3.817e^-5	0.804	UPSTREAM CG14316 INTERGENIC
3L	10413521	3L_10413521_SNP [dm3] 3L_10420421_SNP [dm6]	A	T	3.822e^-5	0.804	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5997888	3L_5997888_SNP [dm3] 3L_6004788_SNP [dm6]	C	T	4.013e^-5	0.804	INTRON PVRAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10845140	3L_10845140_SNP [dm3] 3L_10852040_SNP [dm6]	T	G	4.023e^-5	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6310024	X_6310024_MNP [dm3] X_6415991_MNP [dm6]	ACTT	CGGC	4.061e^-5	0.804	INTERGENIC
X	6310029	X_6310029_SNP [dm3] X_6415996_SNP [dm6]	T	A	4.061e^-5	0.804	INTERGENIC
X	6310034	X_6310034_MNP [dm3] X_6416001_MNP [dm6]	GAATG	CGCAA	4.061e^-5	0.804	INTERGENIC
X	6310041	X_6310041_SNP [dm3] X_6416008_SNP [dm6]	A	G	4.061e^-5	0.804	INTERGENIC
X	6310054	X_6310054_SNP [dm3] X_6416021_SNP [dm6]	G	T	4.061e^-5	0.804	INTERGENIC
X	15665817	X_15665817_SNP [dm3] X_15771784_SNP [dm6]	C	A	4.090e^-5	0.804	NON_SYNONYMOUS_CODING CG33172	TF binding site mE1_TFBS_sens
3L	9746615	3L_9746615_SNP [dm3] 3L_9753515_SNP [dm6]	A	G	4.102e^-5	0.804	INTRON CG42268
2L	8982738	2L_8982738_INS [dm3] 2L_8982738_INS [dm6]	T	TT	4.179e^-5	0.804	INTRON CG13101
3L	2545668	3L_2545668_DEL [dm3] 3L_2545668_DEL [dm6]	TAAATTAAAGGCTTTGT...	T	4.179e^-5	0.804	INTRON Spn
2R	1080219	2R_1080219_SNP [dm3] 2R_5192714_SNP [dm6]	G	A	4.214e^-5	0.804	INTRON Nipped-A
2R	14168976	2R_14168976_SNP [dm3] 2R_18281471_SNP [dm6]	T	A	4.246e^-5	0.804	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18548361	2R_18548361_SNP [dm3] 2R_22660856_SNP [dm6]	A	C	4.521e^-5	0.804	SYNONYMOUS_CODING CG42565 UTR_3_PRIME CG13510 & 1 other DOWNSTREAM CG13511	TF binding site mE1_TFBS_cad
2R	17929804	2R_17929804_SNP [dm3] 2R_22042299_SNP [dm6]	A	G	4.597e^-5	0.804	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna
2L	10817728	2L_10817728_SNP [dm3] 2L_10817728_SNP [dm6]	G	A	4.627e^-5	0.804	INTRON Nos
2R	15027922	2R_15027922_SNP [dm3] 2R_19140417_SNP [dm6]	C	T	4.671e^-5	0.804	SYNONYMOUS_CODING CG15111	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9342975	3L_9342975_SNP [dm3] 3L_9349875_SNP [dm6]	C	A	4.775e^-5	0.804	DOWNSTREAM UGP INTRON PGRP-LF
2L	13059910	2L_13059910_INS [dm3] 2L_13059910_INS [dm6]	T	TTTA	4.788e^-5	0.804	UTR_5_PRIME CG9932	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19649740	3R_19649740_SNP [dm3] 3R_23824018_SNP [dm6]	T	G	4.863e^-5	0.804	INTRON CG34355
2R	18984195	2R_18984195_SNP [dm3] 2R_23096672_SNP [dm6]	A	G	5.012e^-5	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	14695777	2R_14695777_SNP [dm3] 2R_18808272_SNP [dm6]	A	G	5.077e^-5	0.804	DOWNSTREAM CG15096 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	14169845	2R_14169845_SNP [dm3] 2R_18282340_SNP [dm6]	G	A	5.156e^-5	0.804	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11104967	3L_11104967_SNP [dm3] 3L_11111867_SNP [dm6]	T	C	5.170e^-5	0.804	UTR_3_PRIME CG7638 DOWNSTREAM Sod
2R	18087115	2R_18087115_SNP [dm3] 2R_22199610_SNP [dm6]	A	C	5.195e^-5	0.804	INTRON Swim
3R	18323780	3R_18323780_SNP [dm3] 3R_22498058_SNP [dm6]	C	T	5.263e^-5	0.804	INTRON Octbeta1R
3L	13298802	3L_13298802_SNP [dm3] 3L_13305702_SNP [dm6]	T	A	5.326e^-5	0.804	INTERGENIC
2R	11372410	2R_11372410_SNP [dm3] 2R_15484905_SNP [dm6]	G	T	5.345e^-5	0.804	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2L	19129622	2L_19129622_SNP [dm3] 2L_19129622_SNP [dm6]	T	A	5.356e^-5	0.804	UTR_3_PRIME Aats-asn DOWNSTREAM Aats-asn & 1 other	TF binding site mE1_TFBS_cad
3L	9545597	3L_9545597_SNP [dm3] 3L_9552497_SNP [dm6]	C	A	5.514e^-5	0.804	INTRON CG42673
3R	16787474	3R_16787474_SNP [dm3] 3R_20961752_SNP [dm6]	G	C	5.519e^-5	0.804	INTRON Atpalpha
2R	789073	2R_789073_DEL [dm3] 2R_4901568_DEL [dm6]	AATTTGTATATAAATCATCA...	TCTGTTTGTAAATG...	5.656e^-5	0.804	INTRON CG44102
2L	4958840	2L_4958840_SNP [dm3] 2L_4958840_SNP [dm6]	T	G	5.709e^-5	0.804	DOWNSTREAM Marcal1 INTRON CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9746792	3L_9746792_SNP [dm3] 3L_9753692_SNP [dm6]	C	T	5.749e^-5	0.804	INTRON CG42268
3R	23870213	3R_23870213_SNP [dm3] 3R_28044491_SNP [dm6]	A	T	5.760e^-5	0.804	INTRON CG34362
2L	7578722	2L_7578722_SNP [dm3] 2L_7578722_SNP [dm6]	A	C	5.821e^-5	0.804	UTR_5_PRIME RapGAP1
X	19224647	X_19224647_SNP [dm3] X_19330614_SNP [dm6]	A	C	5.840e^-5	0.804	INTRON nAChRalpha7
2R	2718605	2R_2718605_SNP [dm3] 2R_6831100_SNP [dm6]	T	G	5.861e^-5	0.804	DOWNSTREAM CG34215 INTRON CG15236
2R	15838613	2R_15838613_SNP [dm3] 2R_19951108_SNP [dm6]	G	A	5.890e^-5	0.804	UPSTREAM CG10822 INTERGENIC
2L	8887438	2L_8887438_SNP [dm3] 2L_8887438_SNP [dm6]	C	A	5.916e^-5	0.804	EXON CR44415	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	18110638	2L_18110638_SNP [dm3] 2L_18110638_SNP [dm6]	A	G	5.917e^-5	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_bcd
2L	9209653	2L_9209653_SNP [dm3] 2L_9209653_SNP [dm6]	C	G	5.939e^-5	0.804	INTRON tai
2L	6854449	2L_6854449_SNP [dm3] 2L_6854449_SNP [dm6]	A	G	5.942e^-5	0.804	SYNONYMOUS_CODING l_2_k09022 DOWNSTREAM Rca1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12620079	2L_12620079_SNP [dm3] 2L_12620079_SNP [dm6]	A	G	6.009e^-5	0.804	INTRON Ref2 & 1 other	TF binding site mE1_TFBS_cad
3L	11102343	3L_11102343_SNP [dm3] 3L_11109243_SNP [dm6]	G	A	6.044e^-5	0.804	SYNONYMOUS_CODING CG34012 UPSTREAM CG7638 DOWNSTREAM CG12522
2R	7031824	2R_7031824_SNP [dm3] 2R_11144319_SNP [dm6]	G	T	6.053e^-5	0.804	UPSTREAM CG13229 INTRON CG13229	TF binding site BDTNP1_TFBS_da
X	3979536	X_3979536_SNP [dm3] X_4085503_SNP [dm6]	A	C	6.080e^-5	0.804	INTRON CG43689
2R	11373035	2R_11373035_SNP [dm3] 2R_15485530_SNP [dm6]	G	T	6.132e^-5	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	10036336	3L_10036336_SNP [dm3] 3L_10043236_SNP [dm6]	C	G	6.201e^-5	0.804	INTRON dpr6	TF binding site BDTNP1_TFBS_slp1
2L	8887448	2L_8887448_SNP [dm3] 2L_8887448_SNP [dm6]	A	G	6.205e^-5	0.804	EXON CR44415	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
3L	6488252	3L_6488252_SNP [dm3] 3L_6495152_SNP [dm6]	C	T	6.229e^-5	0.804	SYNONYMOUS_CODING CG10144 UPSTREAM sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11369347	2R_11369347_SNP [dm3] 2R_15481842_SNP [dm6]	C	A	6.250e^-5	0.804	INTRON CG8180	TF binding site BDTNP1_TFBS_dl
2R	14098872	2R_14098872_SNP [dm3] 2R_18211367_SNP [dm6]	G	A	6.293e^-5	0.804	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5849263	2L_5849263_SNP [dm3] 2L_5849263_SNP [dm6]	A	C	6.332e^-5	0.804	INTRON TrissinR
2L	19129632	2L_19129632_SNP [dm3] 2L_19129632_SNP [dm6]	A	G	6.428e^-5	0.804	UTR_3_PRIME Aats-asn DOWNSTREAM Aats-asn & 1 other	TF binding site mE1_TFBS_cad
X	15364136	X_15364136_SNP [dm3] X_15470103_SNP [dm6]	G	A	6.488e^-5	0.804	SYNONYMOUS_CODING Grip128	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9341505	3L_9341505_SNP [dm3] 3L_9348405_SNP [dm6]	A	G	6.541e^-5	0.804	DOWNSTREAM PGRP-LC INTERGENIC
2R	11374077	2R_11374077_SNP [dm3] 2R_15486572_SNP [dm6]	G	C	6.558e^-5	0.804	NON_SYNONYMOUS_CODING CG12964	TF binding site mE1_TFBS_chinmo
3R	13806497	3R_13806497_SNP [dm3] 3R_17980775_SNP [dm6]	T	A	6.658e^-5	0.804	INTRON cpo
X	20612463	X_20612463_SNP [dm3] X_20741436_SNP [dm6]	A	C	6.676e^-5	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	1080299	2R_1080299_DEL [dm3] 2R_5192794_DEL [dm6]	GTTCG	G	6.728e^-5	0.804	INTRON Nipped-A
2R	19577394	2R_19577394_SNP [dm3] 2R_23689871_SNP [dm6]	T	C	6.744e^-5	0.804	SYNONYMOUS_CODING Pal2 DOWNSTREAM CG30183
2R	11834110	2R_11834110_SNP [dm3] 2R_15946605_SNP [dm6]	T	C	6.791e^-5	0.804	SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other
2L	16778278	2L_16778278_SNP [dm3] 2L_16778278_SNP [dm6]	C	T	6.792e^-5	0.804	INTRON Mhc
2L	9491178	2L_9491178_SNP [dm3] 2L_9491178_SNP [dm6]	A	T	6.793e^-5	0.804	UTR_3_PRIME Gdi DOWNSTREAM Gdi
2R	17927470	2R_17927470_SNP [dm3] 2R_22039965_SNP [dm6]	T	A	6.891e^-5	0.804	UPSTREAM CG34370 INTERGENIC
2R	14163300	2R_14163300_SNP [dm3] 2R_18275795_SNP [dm6]	G	A	6.902e^-5	0.804	UTR_3_PRIME Ote	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	6952663	X_6952663_DEL [dm3] X_7058630_DEL [dm6]	CGGCG	C	6.940e^-5	0.804	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	12030818	2R_12030818_SNP [dm3] 2R_16143313_SNP [dm6]	G	C	6.983e^-5	0.804	SYNONYMOUS_CODING Aats-cys DOWNSTREAM CG30094	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	19574126	2R_19574126_SNP [dm3] 2R_23686603_SNP [dm6]	G	A	7.171e^-5	0.804	NON_SYNONYMOUS_CODING St3	TF binding site mE1_TFBS_cad
2R	8629750	2R_8629750_SNP [dm3] 2R_12742245_SNP [dm6]	C	T	7.281e^-5	0.804	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26746203	3R_26746203_SNP [dm3] 3R_30920481_SNP [dm6]	T	C	7.296e^-5	0.804	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	2055203	2R_2055203_SNP [dm3] 2R_6167698_SNP [dm6]	C	G	7.473e^-5	0.804	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2R	11372488	2R_11372488_SNP [dm3] 2R_15484983_SNP [dm6]	G	T	7.504e^-5	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	20612843	X_20612843_SNP [dm3] X_20741816_SNP [dm6]	A	G	7.523e^-5	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	7645254	3R_7645254_SNP [dm3] 3R_11819532_SNP [dm6]	C	A	7.526e^-5	0.804	UPSTREAM CoVa & 1 other DOWNSTREAM CG6950 INTRON CoVa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	18367490	X_18367490_INS [dm3] X_18473457_INS [dm6]	G	GG	7.576e^-5	0.804	INTRON CG32547
2R	11370565	2R_11370565_SNP [dm3] 2R_15483060_SNP [dm6]	T	A	7.665e^-5	0.804	UPSTREAM CG8180 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17950492	2R_17950492_SNP [dm3] 2R_22062987_SNP [dm6]	G	A	7.848e^-5	0.804	INTRON Snp
2L	12718175	2L_12718175_SNP [dm3] 2L_12718175_SNP [dm6]	T	A	7.927e^-5	0.804	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
3L	19218038	3L_19218038_SNP [dm3] 3L_19224938_SNP [dm6]	C	G	7.966e^-5	0.804	INTRON fz2
3L	18453523	3L_18453523_INS [dm3] 3L_18460423_INS [dm6]	A	ACGC	8.054e^-5	0.804	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	10968640	X_10968640_SNP [dm3] X_11074607_SNP [dm6]	G	A	8.086e^-5	0.804	SYNONYMOUS_CODING sev	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9795967	2R_9795967_SNP [dm3] 2R_13908462_SNP [dm6]	G	C	8.122e^-5	0.804	INTRON shot	TF binding site mE1_TFBS_cad
X	9971801	X_9971801_SNP [dm3] X_10077768_SNP [dm6]	A	T	8.126e^-5	0.804	INTRON ZAP3
2R	1358575	2R_1358575_SNP [dm3] 2R_5471070_SNP [dm6]	G	A	8.144e^-5	0.804	INTRON CG30440	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2R	17826489	2R_17826489_SNP [dm3] 2R_21938984_SNP [dm6]	T	C	8.419e^-5	0.804	INTRON Fili
2L	1057085	2L_1057085_SNP [dm3] 2L_1057085_SNP [dm6]	T	C	8.432e^-5	0.804	INTRON S
2R	17452820	2R_17452820_SNP [dm3] 2R_21565315_SNP [dm6]	G	T	8.440e^-5	0.804	INTRON CG10440
X	5418162	X_5418162_SNP [dm3] X_5524129_SNP [dm6]	G	T	8.460e^-5	0.804	DOWNSTREAM snoRNA:Psi28S-3342 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_kn
2R	16412969	2R_16412969_SNP [dm3] 2R_20525464_SNP [dm6]	A	G	8.485e^-5	0.804	UPSTREAM CG13422 EXON CR44650
2R	1359334	2R_1359334_SNP [dm3] 2R_5471829_SNP [dm6]	A	G	8.535e^-5	0.804	INTRON CG30440	TF binding site mE1_TFBS_cad
X	6453887	X_6453887_SNP [dm3] X_6559854_SNP [dm6]	C	T	8.543e^-5	0.804	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14830196	2L_14830196_SNP [dm3] 2L_14830196_SNP [dm6]	T	C	8.591e^-5	0.804	INTERGENIC
2L	16778279	2L_16778279_SNP [dm3] 2L_16778279_SNP [dm6]	C	A	8.680e^-5	0.804	INTRON Mhc
2R	18225802	2R_18225802_SNP [dm3] 2R_22338297_SNP [dm6]	A	G	8.731e^-5	0.804	INTRON Liprin-gamma
2R	9761533	2R_9761533_SNP [dm3] 2R_13874028_SNP [dm6]	C	T	8.891e^-5	0.804	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2L	5973720	2L_5973720_SNP [dm3] 2L_5973720_SNP [dm6]	A	G	8.946e^-5	0.804	INTRON chic
3L	9258444	3L_9258444_SNP [dm3] 3L_9265344_SNP [dm6]	T	C	8.947e^-5	0.804	INTRON GluRIB
3L	9258709	3L_9258709_SNP [dm3] 3L_9265609_SNP [dm6]	T	G	9.009e^-5	0.804	INTRON GluRIB
3L	10359770	3L_10359770_SNP [dm3] 3L_10366670_SNP [dm6]	G	A	9.088e^-5	0.804	EXON CR44327
3R	7847428	3R_7847428_SNP [dm3] 3R_12021706_SNP [dm6]	C	A	9.101e^-5	0.804	INTERGENIC
2R	20985312	2R_20985312_SNP [dm3] 2R_25097789_SNP [dm6]	T	C	9.141e^-5	0.804	INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20971597	3R_20971597_DEL [dm3] 3R_25145875_DEL [dm6]	AA	A	9.188e^-5	0.804	INTERGENIC
3R	13197656	3R_13197656_SNP [dm3] 3R_17371934_SNP [dm6]	C	G	9.204e^-5	0.804	UPSTREAM CR44256 INTERGENIC
2R	17586672	2R_17586672_SNP [dm3] 2R_21699167_SNP [dm6]	C	T	9.366e^-5	0.804	INTRON HmgZ
3L	12283242	3L_12283242_SNP [dm3] 3L_12290142_SNP [dm6]	T	G	9.379e^-5	0.804	DOWNSTREAM CG4328 EXON CR45658	TF binding site BDTNP1_TFBS_prd
2L	13093885	2L_13093885_SNP [dm3] 2L_13093885_SNP [dm6]	A	G	9.396e^-5	0.804	INTERGENIC
X	9971804	X_9971804_MNP [dm3] X_10077771_MNP [dm6]	TAT	CCA	9.448e^-5	0.804	INTRON ZAP3
3R	20575501	3R_20575501_SNP [dm3] 3R_24749779_SNP [dm6]	C	A	9.475e^-5	0.804	UTR_5_PRIME tld DOWNSTREAM tok	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9697223	3L_9697223_INS [dm3] 3L_9704123_INS [dm6]	C	TTTATA	9.530e^-5	0.804	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13196788	3R_13196788_SNP [dm3] 3R_17371066_SNP [dm6]	A	G	9.589e^-5	0.804	DOWNSTREAM CR44256 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7847429	3R_7847429_SNP [dm3] 3R_12021707_SNP [dm6]	A	T	9.628e^-5	0.804	INTERGENIC
2R	1078285	2R_1078285_SNP [dm3] 2R_5190780_SNP [dm6]	A	G	9.710e^-5	0.804	INTRON Nipped-A	transposable element FlyBase
3R	21705201	3R_21705201_SNP [dm3] 3R_25879479_SNP [dm6]	G	A	9.723e^-5	0.804	INTRON Tsp96F	TF binding site mE1_TFBS_HSA
2R	16273927	2R_16273927_SNP [dm3] 2R_20386422_SNP [dm6]	T	A	9.789e^-5	0.804	INTERGENIC
2R	11816083	2R_11816083_SNP [dm3] 2R_15928578_SNP [dm6]	G	T	9.833e^-5	0.804	UPSTREAM bdg INTRON bdg
X	6310042	X_6310042_DEL [dm3] X_6416009_DEL [dm6]	CTTATTTT	C	9.840e^-5	0.804	INTERGENIC
X	5418215	X_5418215_SNP [dm3] X_5524182_SNP [dm6]	T	A	9.878e^-5	0.804	DOWNSTREAM snoRNA:Psi28S-3342 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	6744617	2R_6744617_SNP [dm3] 2R_10857112_SNP [dm6]	A	C	9.897e^-5	0.804	INTRON CG30015
2R	19573293	2R_19573293_DEL [dm3] 2R_23685770_DEL [dm6]	CTCA	C	9.971e^-5	0.804	UPSTREAM l_2_efl INTRON St3
3L	9340688	3L_9340688_SNP [dm3] 3L_9347588_SNP [dm6]	G	T	9.989e^-5	0.804	DOWNSTREAM PGRP-LC INTRON PGRP-LC
X	9569799	X_9569799_SNP [dm3] X_9675766_SNP [dm6]	T	G	1.009e^-4	0.804	INTRON nej	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	20072274	2L_20072274_SNP [dm3] 2L_20072274_SNP [dm6]	G	A	1.012e^-4	0.804	UPSTREAM CG10730 INTRON bwa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4958783	2L_4958783_SNP [dm3] 2L_4958783_SNP [dm6]	C	T	1.014e^-4	0.804	SYNONYMOUS_CODING CG34124 DOWNSTREAM Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3024826	X_3024826_SNP [dm3] X_3130793_SNP [dm6]	A	C	1.017e^-4	0.804	SYNONYMOUS_CODING kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7360639	2L_7360639_SNP [dm3] 2L_7360639_SNP [dm6]	C	G	1.018e^-4	0.804	INTERGENIC
2L	1626493	2L_1626493_SNP [dm3] 2L_1626493_SNP [dm6]	C	A	1.023e^-4	0.804	UPSTREAM CR44603 INTERGENIC
2L	9685671	2L_9685671_SNP [dm3] 2L_9685671_SNP [dm6]	A	G	1.025e^-4	0.804	INTRON Pka-C1
2R	11373265	2R_11373265_SNP [dm3] 2R_15485760_SNP [dm6]	G	T	1.026e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9340927	3L_9340927_SNP [dm3] 3L_9347827_SNP [dm6]	C	T	1.030e^-4	0.804	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
3R	4935239	3R_4935239_SNP [dm3] 3R_9109517_SNP [dm6]	A	G	1.032e^-4	0.804	INTRON pum
3R	13242326	3R_13242326_SNP [dm3] 3R_17416604_SNP [dm6]	T	A	1.034e^-4	0.804	UPSTREAM CG33333 DOWNSTREAM CG5866 INTERGENIC
2L	4831370	2L_4831370_SNP [dm3] 2L_4831370_SNP [dm6]	C	T	1.034e^-4	0.804	UPSTREAM CG2976 INTRON Ir25a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9706703	2L_9706703_SNP [dm3] 2L_9706703_SNP [dm6]	G	T	1.034e^-4	0.804	SYNONYMOUS_CODING pelo UPSTREAM CG31710	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	11372415	2R_11372415_INS [dm3] 2R_15484910_INS [dm6]	G	GTCTTCG	1.037e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2L	19470814	2L_19470814_SNP [dm3] 2L_19470814_SNP [dm6]	A	T	1.038e^-4	0.804	UPSTREAM CR45723 DOWNSTREAM CR43839 & 1 other INTERGENIC
2L	12767848	2L_12767848_SNP [dm3] 2L_12767848_SNP [dm6]	G	A	1.039e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_Stat92E
2L	4830844	2L_4830844_DEL [dm3] 2L_4830844_DEL [dm6]	TTG	T	1.040e^-4	0.804	UTR_3_PRIME Ir25a UPSTREAM mir-4912 & 1 other DOWNSTREAM Ir25a INTRAGENIC Ir25a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	23893137	3R_23893137_SNP [dm3] 3R_28067415_SNP [dm6]	C	T	1.044e^-4	0.804	INTRON CG34362
2R	16273922	2R_16273922_SNP [dm3] 2R_20386417_SNP [dm6]	T	A	1.049e^-4	0.804	INTERGENIC
2L	554118	2L_554118_SNP [dm3] 2L_554118_SNP [dm6]	C	T	1.050e^-4	0.804	NON_SYNONYMOUS_CODING rempA
2R	11373104	2R_11373104_SNP [dm3] 2R_15485599_SNP [dm6]	T	A	1.051e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	26575296	3R_26575296_SNP [dm3] 3R_30749574_SNP [dm6]	C	A	1.052e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9767598	2R_9767598_SNP [dm3] 2R_13880093_SNP [dm6]	G	A	1.054e^-4	0.804	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3L	9351670	3L_9351670_SNP [dm3] 3L_9358570_SNP [dm6]	G	C	1.059e^-4	0.804	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25290830	3R_25290830_SNP [dm3] 3R_29465108_SNP [dm6]	G	C	1.061e^-4	0.804	INTRON Ptp99A
2R	16273933	2R_16273933_SNP [dm3] 2R_20386428_SNP [dm6]	T	G	1.070e^-4	0.804	INTERGENIC
2R	18688140	2R_18688140_SNP [dm3] 2R_22800635_SNP [dm6]	C	G	1.079e^-4	0.804	SYNONYMOUS_CODING blw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11373169	2R_11373169_SNP [dm3] 2R_15485664_SNP [dm6]	G	A	1.080e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1021155	2L_1021155_SNP [dm3] 2L_1021155_SNP [dm6]	T	C	1.081e^-4	0.804	INTRON IA-2
2L	8988213	2L_8988213_SNP [dm3] 2L_8988213_SNP [dm6]	T	A	1.084e^-4	0.804	INTRON rost
3R	26962288	3R_26962288_SNP [dm3] 3R_31136566_SNP [dm6]	A	C	1.087e^-4	0.804	INTRON Gycbeta100B
X	8836135	X_8836135_SNP [dm3] X_8942102_SNP [dm6]	A	T	1.090e^-4	0.804	INTRON rdgA
X	18011757	X_18011757_INS [dm3] X_18117724_INS [dm6]	T	TT	1.108e^-4	0.804	UPSTREAM wupA INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11373292	2R_11373292_SNP [dm3] 2R_15485787_SNP [dm6]	A	C	1.113e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16347132	2R_16347132_SNP [dm3] 2R_20459627_SNP [dm6]	G	A	1.120e^-4	0.804	SPLICE_SITE_REGION CG12484 INTRON CG12484
3L	19901407	3L_19901407_SNP [dm3] 3L_19908307_SNP [dm6]	A	G	1.129e^-4	0.804	INTRON Mi-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9765911	2L_9765911_SNP [dm3] 2L_9765911_SNP [dm6]	T	C	1.131e^-4	0.804	NON_SYNONYMOUS_CODING ppk18 DOWNSTREAM und
X	21456873	X_21456873_DEL [dm3] X_21585846_DEL [dm6]	CTGCCGCAACC...	C	1.141e^-4	0.804	INTERGENIC	transposable element FlyBase
2R	8669368	2R_8669368_SNP [dm3] 2R_12781863_SNP [dm6]	A	T	1.142e^-4	0.804	INTRON sca	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	18138319	2L_18138319_SNP [dm3] 2L_18138319_SNP [dm6]	A	T	1.143e^-4	0.804	UPSTREAM kel DOWNSTREAM Socs36E INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	6854134	2L_6854134_SNP [dm3] 2L_6854134_SNP [dm6]	G	A	1.144e^-4	0.804	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11652851	3R_11652851_SNP [dm3] 3R_15827129_SNP [dm6]	A	G	1.154e^-4	0.804	SYNONYMOUS_CODING CG4576 INTRON rec
3L	1284639	3L_1284639_SNP [dm3] 3L_1284639_SNP [dm6]	T	G	1.156e^-4	0.804	INTRON CG32333
3L	10785482	3L_10785482_SNP [dm3] 3L_10792382_SNP [dm6]	A	T	1.160e^-4	0.804	INTERGENIC
2L	8046430	2L_8046430_SNP [dm3] 2L_8046430_SNP [dm6]	T	C	1.161e^-4	0.804	SYNONYMOUS_CODING CG7466
2R	16273939	2R_16273939_SNP [dm3] 2R_20386434_SNP [dm6]	A	G	1.163e^-4	0.804	INTERGENIC
2R	16273942	2R_16273942_SNP [dm3] 2R_20386437_SNP [dm6]	T	A	1.163e^-4	0.804	INTERGENIC
2L	18120835	2L_18120835_SNP [dm3] 2L_18120835_SNP [dm6]	G	A	1.164e^-4	0.804	INTRON CG5758
2L	14928118	2L_14928118_SNP [dm3] 2L_14928118_SNP [dm6]	G	A	1.170e^-4	0.804	SYNONYMOUS_CODING CG3491 INTRON CG42313
3L	509198	3L_509198_SNP [dm3] 3L_509198_SNP [dm6]	A	C	1.171e^-4	0.804	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	548546	2L_548546_SNP [dm3] 2L_548546_SNP [dm6]	G	A	1.176e^-4	0.804	INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	6310031	X_6310031_SNP [dm3] X_6415998_SNP [dm6]	C	A	1.178e^-4	0.804	INTERGENIC
X	21457549	X_21457549_SNP [dm3] X_21586522_SNP [dm6]	G	A	1.181e^-4	0.804	INTERGENIC
2R	17586016	2R_17586016_SNP [dm3] 2R_21698511_SNP [dm6]	A	T	1.184e^-4	0.804	SYNONYMOUS_CODING HmgZ
2R	14459693	2R_14459693_SNP [dm3] 2R_18572188_SNP [dm6]	G	C	1.184e^-4	0.804	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11146992	3L_11146992_SNP [dm3] 3L_11153892_SNP [dm6]	G	C	1.195e^-4	0.804	INTRON CG32082
2L	14304576	2L_14304576_SNP [dm3] 2L_14304576_SNP [dm6]	G	A	1.196e^-4	0.804	INTRON wb	TF binding site mE1_TFBS_inv
2R	18985607	2R_18985607_SNP [dm3] 2R_23098084_SNP [dm6]	C	G	1.196e^-4	0.804	INTERGENIC
2R	19107320	2R_19107320_SNP [dm3] 2R_23219797_SNP [dm6]	G	C	1.207e^-4	0.804	INTERGENIC
3L	10439529	3L_10439529_SNP [dm3] 3L_10446429_SNP [dm6]	C	T	1.211e^-4	0.804	INTERGENIC
2R	11834125	2R_11834125_SNP [dm3] 2R_15946620_SNP [dm6]	A	G	1.223e^-4	0.804	SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other
2R	16273934	2R_16273934_SNP [dm3] 2R_20386429_SNP [dm6]	T	A	1.224e^-4	0.804	INTERGENIC
2R	3346733	2R_3346733_DEL [dm3] 2R_7459228_DEL [dm6]	TA	T	1.225e^-4	0.804	UPSTREAM Inos DOWNSTREAM CG11141 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18367527	X_18367527_SNP [dm3] X_18473494_SNP [dm6]	G	C	1.236e^-4	0.804	INTRON CG32547
3R	8167858	3R_8167858_SNP [dm3] 3R_12342136_SNP [dm6]	A	T	1.240e^-4	0.804	NON_SYNONYMOUS_CODING CG44956
3R	19216559	3R_19216559_SNP [dm3] 3R_23390837_SNP [dm6]	C	T	1.258e^-4	0.804	DOWNSTREAM CR43387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	15877310	2R_15877310_SNP [dm3] 2R_19989805_SNP [dm6]	C	T	1.259e^-4	0.804	INTERGENIC
3L	3158641	3L_3158641_SNP [dm3] 3L_3158641_SNP [dm6]	C	T	1.261e^-4	0.804	SYNONYMOUS_CODING NDUFS3 DOWNSTREAM BtbVII	TF binding site mE1_TFBS_sens
2L	14830212	2L_14830212_SNP [dm3] 2L_14830212_SNP [dm6]	C	T	1.264e^-4	0.804	INTERGENIC
2R	19573384	2R_19573384_SNP [dm3] 2R_23685861_SNP [dm6]	T	A	1.266e^-4	0.804	UPSTREAM l_2_efl INTRON St3
2R	14749940	2R_14749940_SNP [dm3] 2R_18862435_SNP [dm6]	A	T	1.272e^-4	0.804	UPSTREAM CG43069 & 1 other INTERGENIC
2L	7366925	2L_7366925_SNP [dm3] 2L_7366925_SNP [dm6]	A	T	1.277e^-4	0.804	INTRON Wnt10
2R	11373153	2R_11373153_SNP [dm3] 2R_15485648_SNP [dm6]	G	C	1.279e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	19387567	2R_19387567_SNP [dm3] 2R_23500044_SNP [dm6]	G	C	1.282e^-4	0.804	NON_SYNONYMOUS_CODING CG13558	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	23893109	3R_23893109_SNP [dm3] 3R_28067387_SNP [dm6]	C	T	1.284e^-4	0.804	INTRON CG34362
2L	8348373	2L_8348373_SNP [dm3] 2L_8348373_SNP [dm6]	T	G	1.286e^-4	0.804	INTRON CG7778
2R	11370056	2R_11370056_SNP [dm3] 2R_15482551_SNP [dm6]	G	A	1.286e^-4	0.804	UTR_5_PRIME CG8180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27138940	3R_27138940_SNP [dm3] 3R_31313218_SNP [dm6]	G	T	1.288e^-4	0.804	INTRON CG34347	TF binding site mE1_TFBS_inv
2R	11372482	2R_11372482_SNP [dm3] 2R_15484977_SNP [dm6]	G	T	1.297e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	11373253	2R_11373253_INS [dm3] 2R_15485748_INS [dm6]	A	AAAAAATTAAAATTAAAAAA...	1.297e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6975950	3L_6975950_SNP [dm3] 3L_6982850_SNP [dm6]	C	A	1.303e^-4	0.804	DOWNSTREAM CG32388 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1036695	2L_1036695_SNP [dm3] 2L_1036695_SNP [dm6]	G	T	1.303e^-4	0.804	UPSTREAM CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14830203	2L_14830203_SNP [dm3] 2L_14830203_SNP [dm6]	T	C	1.304e^-4	0.804	INTERGENIC
3R	15041597	3R_15041597_SNP [dm3] 3R_19215875_SNP [dm6]	T	A	1.312e^-4	0.804	UTR_3_PRIME vib DOWNSTREAM cry
3L	19631605	3L_19631605_SNP [dm3] 3L_19638505_SNP [dm6]	C	T	1.319e^-4	0.804	SYNONYMOUS_CODING CG8786 UTR_3_PRIME CG8786 DOWNSTREAM CG8786
2R	11782608	2R_11782608_SNP [dm3] 2R_15895103_SNP [dm6]	C	T	1.327e^-4	0.804	DOWNSTREAM CG33463 INTRON sli	regulatory region REDfly_CRMs
2L	9685674	2L_9685674_SNP [dm3] 2L_9685674_SNP [dm6]	A	G	1.330e^-4	0.804	INTRON Pka-C1
2L	9685703	2L_9685703_SNP [dm3] 2L_9685703_SNP [dm6]	A	G	1.330e^-4	0.804	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl
2L	9706787	2L_9706787_SNP [dm3] 2L_9706787_SNP [dm6]	T	C	1.333e^-4	0.804	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	8244129	2R_8244129_SNP [dm3] 2R_12356624_SNP [dm6]	C	T	1.335e^-4	0.804	SYNONYMOUS_CODING CG30049	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	11377610	2R_11377610_SNP [dm3] 2R_15490105_SNP [dm6]	A	G	1.346e^-4	0.804	INTRON CG12964
X	9944268	X_9944268_SNP [dm3] X_10050235_SNP [dm6]	G	A	1.351e^-4	0.804	SYNONYMOUS_CODING Cht6 DOWNSTREAM Yp2
3R	13210276	3R_13210276_SNP [dm3] 3R_17384554_SNP [dm6]	A	T	1.357e^-4	0.804	INTRON Brf & 1 other
2R	2075232	2R_2075232_SNP [dm3] 2R_6187727_SNP [dm6]	T	A	1.358e^-4	0.804	DOWNSTREAM Ptr INTRON Ptr
3R	20443026	3R_20443026_SNP [dm3] 3R_24617304_SNP [dm6]	A	C	1.360e^-4	0.804	SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17647628	2R_17647628_SNP [dm3] 2R_21760123_SNP [dm6]	C	A	1.367e^-4	0.804	INTERGENIC
3L	11101719	3L_11101719_SNP [dm3] 3L_11108619_SNP [dm6]	C	T	1.371e^-4	0.804	SYNONYMOUS_CODING CG12522 DOWNSTREAM CG34012
3R	27173844	3R_27173844_SNP [dm3] 3R_31348122_SNP [dm6]	T	G	1.371e^-4	0.804	INTRON CG34347
2R	15267975	2R_15267975_SNP [dm3] 2R_19380470_SNP [dm6]	T	A	1.375e^-4	0.804	UPSTREAM CG10073 DOWNSTREAM CG10062 INTERGENIC
2L	8989104	2L_8989104_SNP [dm3] 2L_8989104_SNP [dm6]	C	T	1.378e^-4	0.804	UTR_5_PRIME rost
2R	684128	2R_684128_SNP [dm3] 2R_4796623_SNP [dm6]	G	A	1.378e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3L	11123183	3L_11123183_SNP [dm3] 3L_11130083_SNP [dm6]	C	A	1.382e^-4	0.804	SYNONYMOUS_CODING CG42575 UPSTREAM nol	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	505733	2L_505733_SNP [dm3] 2L_505733_SNP [dm6]	C	T	1.386e^-4	0.804	INTRON ush
2L	9685690	2L_9685690_SNP [dm3] 2L_9685690_SNP [dm6]	T	A	1.397e^-4	0.804	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl
X	20989831	X_20989831_SNP [dm3] X_21118804_SNP [dm6]	G	T	1.397e^-4	0.804	DOWNSTREAM CR44374 INTRON CG15445	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16304141	3L_16304141_SNP [dm3] 3L_16311041_SNP [dm6]	T	A	1.399e^-4	0.804	EXON CR32160
3L	1692015	3L_1692015_SNP [dm3] 3L_1692015_SNP [dm6]	T	C	1.399e^-4	0.804	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14265681	2R_14265681_SNP [dm3] 2R_18378176_SNP [dm6]	G	C	1.406e^-4	0.804	EXON CR42736	TF binding site BDTNP1_TFBS_twi
2L	7366950	2L_7366950_SNP [dm3] 2L_7366950_SNP [dm6]	T	G	1.417e^-4	0.804	INTRON Wnt10
3R	19216193	3R_19216193_SNP [dm3] 3R_23390471_SNP [dm6]	A	T	1.418e^-4	0.804	EXON CR43387	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20606283	X_20606283_SNP [dm3] X_20735256_SNP [dm6]	T	A	1.425e^-4	0.804	SYNONYMOUS_CODING CG1324	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12930566	3L_12930566_SNP [dm3] 3L_12937466_SNP [dm6]	A	C	1.428e^-4	0.804	INTERGENIC
2L	13058490	2L_13058490_SNP [dm3] 2L_13058490_SNP [dm6]	C	G	1.428e^-4	0.804	INTRON CG9932
3R	11652950	3R_11652950_SNP [dm3] 3R_15827228_SNP [dm6]	A	G	1.431e^-4	0.804	SYNONYMOUS_CODING CG4576 INTRON rec
3R	16503405	3R_16503405_SNP [dm3] 3R_20677683_SNP [dm6]	C	G	1.433e^-4	0.804	UPSTREAM CR43452 & 1 other EXON CR45024
2R	14168973	2R_14168973_SNP [dm3] 2R_18281468_SNP [dm6]	T	A	1.435e^-4	0.804	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10042683	3L_10042683_SNP [dm3] 3L_10049583_SNP [dm6]	G	C	1.437e^-4	0.804	INTRON dpr6
3L	4064605	3L_4064605_SNP [dm3] 3L_4064605_SNP [dm6]	C	T	1.447e^-4	0.804	UTR_3_PRIME wit DOWNSTREAM dib
X	16667437	X_16667437_SNP [dm3] X_16773404_SNP [dm6]	A	T	1.452e^-4	0.804	INTRON if	TF binding site BDTNP1_TFBS_da
X	5422902	X_5422902_SNP [dm3] X_5528869_SNP [dm6]	C	T	1.464e^-4	0.804	DOWNSTREAM Vsx2 INTERGENIC
3R	9702489	3R_9702489_SNP [dm3] 3R_13876767_SNP [dm6]	C	G	1.484e^-4	0.804	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9685726	2L_9685726_SNP [dm3] 2L_9685726_SNP [dm6]	T	G	1.484e^-4	0.804	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	16781076	3R_16781076_SNP [dm3] 3R_20955354_SNP [dm6]	G	T	1.485e^-4	0.804	INTRON Atpalpha
2L	10320770	2L_10320770_SNP [dm3] 2L_10320770_SNP [dm6]	A	C	1.489e^-4	0.804	INTRON CG5381
X	17565628	X_17565628_SNP [dm3] X_17671595_SNP [dm6]	T	A	1.489e^-4	0.804	DOWNSTREAM chas INTRON CG12990
2R	1078283	2R_1078283_SNP [dm3] 2R_5190778_SNP [dm6]	T	G	1.495e^-4	0.804	INTRON Nipped-A	transposable element FlyBase
3L	6627280	3L_6627280_DEL [dm3] 3L_6634180_DEL [dm6]	TTTCA	AAG	1.505e^-4	0.804	INTRON GluRIA
3R	24845292	3R_24845292_SNP [dm3] 3R_29019570_SNP [dm6]	A	C	1.506e^-4	0.804	INTRON wat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	12377679	3L_12377679_SNP [dm3] 3L_12384579_SNP [dm6]	A	T	1.507e^-4	0.804	INTRON Ncc69
2R	15781521	2R_15781521_SNP [dm3] 2R_19894016_SNP [dm6]	T	C	1.508e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9950537	2L_9950537_SNP [dm3] 2L_9950537_SNP [dm6]	A	G	1.521e^-4	0.804	UPSTREAM mir-87 INTERGENIC
3L	10845102	3L_10845102_SNP [dm3] 3L_10852002_SNP [dm6]	A	T	1.523e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18349099	2R_18349099_SNP [dm3] 2R_22461594_SNP [dm6]	G	T	1.526e^-4	0.804	INTRON CG10384
3L	9340535	3L_9340535_DEL [dm3] 3L_9347435_DEL [dm6]	AATCAATAACAAATATCATA...	A	1.529e^-4	0.804	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	9342849	3L_9342849_SNP [dm3] 3L_9349749_SNP [dm6]	T	C	1.530e^-4	0.804	NON_SYNONYMOUS_CODING PGRP-LF
3L	9342851	3L_9342851_SNP [dm3] 3L_9349751_SNP [dm6]	C	G	1.530e^-4	0.804	NON_SYNONYMOUS_CODING PGRP-LF
X	16308630	X_16308630_SNP [dm3] X_16414597_SNP [dm6]	G	A	1.544e^-4	0.804	UTR_3_PRIME CG4301 UPSTREAM Traf-like DOWNSTREAM CG4301
X	9971829	X_9971829_SNP [dm3] X_10077796_SNP [dm6]	C	A	1.553e^-4	0.804	INTRON ZAP3
2R	11816074	2R_11816074_SNP [dm3] 2R_15928569_SNP [dm6]	T	C	1.555e^-4	0.804	UPSTREAM bdg INTRON bdg
3R	11040688	3R_11040688_SNP [dm3] 3R_15214966_SNP [dm6]	T	C	1.556e^-4	0.804	SYNONYMOUS_CODING SIDL DOWNSTREAM CG4210
3L	10039648	3L_10039648_SNP [dm3] 3L_10046548_SNP [dm6]	T	A	1.559e^-4	0.804	INTRON dpr6
X	11656131	X_11656131_SNP [dm3] X_11762098_SNP [dm6]	A	G	1.564e^-4	0.804	INTRON m
2R	17790136	2R_17790136_SNP [dm3] 2R_21902631_SNP [dm6]	C	G	1.575e^-4	0.804	INTRON Fili
3L	10668902	3L_10668902_INS [dm3] 3L_10675802_INS [dm6]	A	AA	1.581e^-4	0.804	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16274016	2R_16274016_SNP [dm3] 2R_20386511_SNP [dm6]	T	C	1.585e^-4	0.804	INTERGENIC
2R	14752706	2R_14752706_SNP [dm3] 2R_18865201_SNP [dm6]	G	C	1.587e^-4	0.804	UTR_5_PRIME CG43071 UPSTREAM Dpt DOWNSTREAM CG43070
2L	19129620	2L_19129620_SNP [dm3] 2L_19129620_SNP [dm6]	A	C	1.588e^-4	0.804	UTR_3_PRIME Aats-asn DOWNSTREAM Aats-asn & 1 other	TF binding site mE1_TFBS_cad
2L	1626445	2L_1626445_SNP [dm3] 2L_1626445_SNP [dm6]	T	A	1.604e^-4	0.804	UPSTREAM CR44603 INTERGENIC
3R	14360189	3R_14360189_SNP [dm3] 3R_18534467_SNP [dm6]	C	G	1.613e^-4	0.804	INTRON fru
2R	2059456	2R_2059456_SNP [dm3] 2R_6171951_SNP [dm6]	G	C	1.621e^-4	0.804	UPSTREAM tRNA:K2:42Ad DOWNSTREAM tRNA:CR30316 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	16308641	X_16308641_SNP [dm3] X_16414608_SNP [dm6]	T	A	1.625e^-4	0.804	UTR_3_PRIME CG4301 UPSTREAM Traf-like DOWNSTREAM CG4301
3R	18109021	3R_18109021_SNP [dm3] 3R_22283299_SNP [dm6]	T	A	1.627e^-4	0.804	INTRON SKIP
2R	18988002	2R_18988002_SNP [dm3] 2R_23100479_SNP [dm6]	G	A	1.628e^-4	0.804	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11341793	3L_11341793_SNP [dm3] 3L_11348693_SNP [dm6]	A	G	1.635e^-4	0.804	DOWNSTREAM CR45251 INTERGENIC
3R	18323843	3R_18323843_SNP [dm3] 3R_22498121_SNP [dm6]	C	T	1.640e^-4	0.804	INTRON Octbeta1R
2R	11373312	2R_11373312_SNP [dm3] 2R_15485807_SNP [dm6]	T	A	1.642e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11373318	2R_11373318_MNP [dm3] 2R_15485813_MNP [dm6]	GTGT	TAAG	1.642e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14138272	2R_14138272_SNP [dm3] 2R_18250767_SNP [dm6]	T	A	1.647e^-4	0.804	INTERGENIC
2L	9285592	2L_9285592_SNP [dm3] 2L_9285592_SNP [dm6]	A	C	1.648e^-4	0.804	INTRON Ggamma30A
3R	25784647	3R_25784647_SNP [dm3] 3R_29958925_SNP [dm6]	A	C	1.649e^-4	0.804	INTRON TkR99D
2L	8989103	2L_8989103_SNP [dm3] 2L_8989103_SNP [dm6]	C	A	1.653e^-4	0.804	START_GAINED rost UTR_5_PRIME rost
2R	19573464	2R_19573464_SNP [dm3] 2R_23685941_SNP [dm6]	T	A	1.654e^-4	0.804	UPSTREAM l_2_efl INTRON St3
2R	1080257	2R_1080257_DEL [dm3] 2R_5192752_DEL [dm6]	CAATCGACAGCTTACTGCAT...	C	1.657e^-4	0.804	INTRON Nipped-A
3L	19882269	3L_19882269_SNP [dm3] 3L_19889169_SNP [dm6]	T	C	1.667e^-4	0.804	UTR_3_PRIME Su_Tpl_ UPSTREAM Mi-2 INTRON Mi-2
2L	18345166	2L_18345166_SNP [dm3] 2L_18345166_SNP [dm6]	G	A	1.682e^-4	0.804	INTRON Fas3	TF binding site mE1_TFBS_inv
2R	12074021	2R_12074021_SNP [dm3] 2R_16186516_SNP [dm6]	C	A	1.686e^-4	0.804	UPSTREAM clu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Ubx
3L	3313169	3L_3313169_SNP [dm3] 3L_3313169_SNP [dm6]	C	A	1.686e^-4	0.804	NON_SYNONYMOUS_CODING ZnT63C UTR_3_PRIME ZnT63C	TF binding site mE1_TFBS_cad
2R	577204	2R_577204_SNP [dm3] 2R_4689699_SNP [dm6]	G	C	1.691e^-4	0.804	INTERGENIC	transposable element FlyBase
3R	26961848	3R_26961848_SNP [dm3] 3R_31136126_SNP [dm6]	A	G	1.697e^-4	0.804	INTRON Gycbeta100B
3R	21980471	3R_21980471_SNP [dm3] 3R_26154749_SNP [dm6]	A	G	1.702e^-4	0.804	INTERGENIC
X	15095086	X_15095086_SNP [dm3] X_15201053_SNP [dm6]	T	A	1.705e^-4	0.804	INTERGENIC
3R	21317362	3R_21317362_SNP [dm3] 3R_25491640_SNP [dm6]	A	G	1.705e^-4	0.804	NON_SYNONYMOUS_CODING CG5112 UPSTREAM Dhap-at EXON CR44179	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	277382	3L_277382_SNP [dm3] 3L_277382_SNP [dm6]	G	C	1.713e^-4	0.804	UPSTREAM RhoGEF3 DOWNSTREAM ttm2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6708958	2L_6708958_SNP [dm3] 2L_6708958_SNP [dm6]	C	A	1.714e^-4	0.804	UTR_5_PRIME Tsp UPSTREAM Tsp INTRON Tsp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19385660	3L_19385660_SNP [dm3] 3L_19392560_SNP [dm6]	A	G	1.722e^-4	0.804	INTRON CG32206
3L	19643131	3L_19643131_SNP [dm3] 3L_19650031_SNP [dm6]	C	A	1.729e^-4	0.804	UPSTREAM Oat DOWNSTREAM tey INTERGENIC
2R	5401079	2R_5401079_SNP [dm3] 2R_9513574_SNP [dm6]	C	A	1.736e^-4	0.804	INTRON brp
3L	18452347	3L_18452347_SNP [dm3] 3L_18459247_SNP [dm6]	C	G	1.737e^-4	0.804	DOWNSTREAM CG32196 INTERGENIC
3R	18329283	3R_18329283_SNP [dm3] 3R_22503561_SNP [dm6]	T	C	1.738e^-4	0.804	INTRON Octbeta1R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18372679	2L_18372679_SNP [dm3] 2L_18372679_SNP [dm6]	G	A	1.744e^-4	0.804	INTRON Fas3
3L	9343389	3L_9343389_DEL [dm3] 3L_9350289_DEL [dm6]	AA	T	1.752e^-4	0.804	DOWNSTREAM UGP INTRON PGRP-LF
3R	27066963	3R_27066963_SNP [dm3] 3R_31241241_SNP [dm6]	A	G	1.754e^-4	0.804	INTRON qless
2R	17917208	2R_17917208_SNP [dm3] 2R_22029703_SNP [dm6]	T	A	1.754e^-4	0.804	INTRON CG34370
3L	9376440	3L_9376440_SNP [dm3] 3L_9383340_SNP [dm6]	A	T	1.760e^-4	0.804	UPSTREAM Hsp27 DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11373438	2R_11373438_SNP [dm3] 2R_15485933_SNP [dm6]	A	T	1.760e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	18330969	2L_18330969_SNP [dm3] 2L_18330969_SNP [dm6]	A	T	1.761e^-4	0.804	INTRON Fas3	TF binding site mE1_TFBS_inv
2R	15104192	2R_15104192_SNP [dm3] 2R_19216687_SNP [dm6]	T	C	1.762e^-4	0.804	INTRON hppy
X	3199335	X_3199335_SNP [dm3] X_3305302_SNP [dm6]	T	C	1.768e^-4	0.804	INTRON dnc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21457124	X_21457124_SNP [dm3] X_21586097_SNP [dm6]	G	T	1.776e^-4	0.804	INTERGENIC
3L	16627694	3L_16627694_SNP [dm3] 3L_16634594_SNP [dm6]	T	A	1.778e^-4	0.804	INTRON Abl
2R	4217898	2R_4217898_INS [dm3] 2R_8330393_INS [dm6]	A	AACACCG	1.787e^-4	0.804	INTRON pdm3
2R	1358536	2R_1358536_SNP [dm3] 2R_5471031_SNP [dm6]	G	A	1.788e^-4	0.804	INTRON CG30440	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	7449800	2L_7449800_SNP [dm3] 2L_7449800_SNP [dm6]	A	T	1.792e^-4	0.804	UTR_5_PRIME santa-maria INTRON santa-maria
3R	22456430	3R_22456430_SNP [dm3] 3R_26630708_SNP [dm6]	C	T	1.796e^-4	0.804	SYNONYMOUS_CODING TwdlJ	TF binding site mE1_TFBS_chinmo
2L	14830210	2L_14830210_SNP [dm3] 2L_14830210_SNP [dm6]	T	A	1.797e^-4	0.804	INTERGENIC
2R	11385223	2R_11385223_DEL [dm3] 2R_15497718_DEL [dm6]	ATAC	T	1.810e^-4	0.804	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	11385228	2R_11385228_SNP [dm3] 2R_15497723_SNP [dm6]	T	G	1.810e^-4	0.804	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	1358734	2R_1358734_SNP [dm3] 2R_5471229_SNP [dm6]	G	C	1.821e^-4	0.804	INTRON CG30440	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3R	23893182	3R_23893182_SNP [dm3] 3R_28067460_SNP [dm6]	A	T	1.828e^-4	0.804	INTRON CG34362
2L	6854350	2L_6854350_SNP [dm3] 2L_6854350_SNP [dm6]	G	A	1.835e^-4	0.804	SYNONYMOUS_CODING l_2_k09022 DOWNSTREAM Rca1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9971809	X_9971809_SNP [dm3] X_10077776_SNP [dm6]	A	G	1.841e^-4	0.804	INTRON ZAP3
3R	7520555	3R_7520555_SNP [dm3] 3R_11694833_SNP [dm6]	A	T	1.844e^-4	0.804	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14830187	2L_14830187_SNP [dm3] 2L_14830187_SNP [dm6]	T	G	1.845e^-4	0.804	INTERGENIC
3L	3573999	3L_3573999_SNP [dm3] 3L_3573999_SNP [dm6]	A	C	1.847e^-4	0.804	INTRON Eip63E
2R	20985402	2R_20985402_SNP [dm3] 2R_25097879_SNP [dm6]	C	T	1.859e^-4	0.804	INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21171528	X_21171528_INS [dm3] X_21300501_INS [dm6]	G	GGG	1.859e^-4	0.804	INTRON CG1718
2L	553922	2L_553922_SNP [dm3] 2L_553922_SNP [dm6]	T	C	1.860e^-4	0.804	UTR_3_PRIME rempA UPSTREAM Ets21C
2R	5943150	2R_5943150_SNP [dm3] 2R_10055645_SNP [dm6]	A	T	1.860e^-4	0.804	INTRON magu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	25261852	3R_25261852_INS [dm3] 3R_29436130_INS [dm6]	T	TAAACTT	1.866e^-4	0.804	INTRON Ptp99A
2L	1693273	2L_1693273_SNP [dm3] 2L_1693273_SNP [dm6]	T	G	1.870e^-4	0.804	INTRON chinmo
2L	13093887	2L_13093887_SNP [dm3] 2L_13093887_SNP [dm6]	T	G	1.875e^-4	0.804	INTERGENIC
3L	10042804	3L_10042804_SNP [dm3] 3L_10049704_SNP [dm6]	A	T	1.876e^-4	0.804	INTRON dpr6
3R	15125649	3R_15125649_SNP [dm3] 3R_19299927_SNP [dm6]	A	T	1.876e^-4	0.804	INTERGENIC
3R	25261123	3R_25261123_SNP [dm3] 3R_29435401_SNP [dm6]	A	G	1.881e^-4	0.804	INTRON Ptp99A
3L	13778300	3L_13778300_SNP [dm3] 3L_13785200_SNP [dm6]	T	A	1.882e^-4	0.804	INTRON bru-3
2R	1366968	2R_1366968_SNP [dm3] 2R_5479463_SNP [dm6]	A	C	1.883e^-4	0.804	INTRON CG30440	transposable element FlyBase
2R	16273951	2R_16273951_SNP [dm3] 2R_20386446_SNP [dm6]	T	A	1.885e^-4	0.804	INTERGENIC
2R	16273953	2R_16273953_SNP [dm3] 2R_20386448_SNP [dm6]	T	A	1.885e^-4	0.804	INTERGENIC
3R	26048450	3R_26048450_SNP [dm3] 3R_30222728_SNP [dm6]	C	G	1.885e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	8836153	X_8836153_SNP [dm3] X_8942120_SNP [dm6]	G	A	1.890e^-4	0.804	INTRON rdgA
3L	10845130	3L_10845130_SNP [dm3] 3L_10852030_SNP [dm6]	C	T	1.893e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9491046	2L_9491046_SNP [dm3] 2L_9491046_SNP [dm6]	A	T	1.900e^-4	0.804	DOWNSTREAM Gdi INTERGENIC
2L	9491036	2L_9491036_SNP [dm3] 2L_9491036_SNP [dm6]	G	A	1.902e^-4	0.804	DOWNSTREAM Gdi INTERGENIC
3L	19770694	3L_19770694_SNP [dm3] 3L_19777594_SNP [dm6]	A	T	1.903e^-4	0.804	INTRON CG42637 & 1 other
3L	11104776	3L_11104776_SNP [dm3] 3L_11111676_SNP [dm6]	C	T	1.906e^-4	0.804	SYNONYMOUS_CODING CG7638 DOWNSTREAM Sod
3L	11104980	3L_11104980_SNP [dm3] 3L_11111880_SNP [dm6]	C	A	1.906e^-4	0.804	UTR_3_PRIME CG7638 DOWNSTREAM Sod
2L	18372066	2L_18372066_DEL [dm3] 2L_18372066_DEL [dm6]	AA	A	1.912e^-4	0.804	INTRON Fas3
2R	20027908	2R_20027908_SNP [dm3] 2R_24140385_SNP [dm6]	T	C	1.913e^-4	0.804	INTRON Dat
2L	13059899	2L_13059899_DEL [dm3] 2L_13059899_DEL [dm6]	TTTGTTTTC	T	1.920e^-4	0.804	UTR_5_PRIME CG9932	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	684959	2L_684959_SNP [dm3] 2L_684959_SNP [dm6]	A	T	1.926e^-4	0.804	INTRON ds	TF binding site BDTNP1_TFBS_dl
2R	3939278	2R_3939278_SNP [dm3] 2R_8051773_SNP [dm6]	A	T	1.934e^-4	0.804	DOWNSTREAM CG12769 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h
3L	2713873	3L_2713873_DEL [dm3] 3L_2713873_DEL [dm6]	TCTT	C	1.937e^-4	0.804	INTERGENIC
2L	1995382	2L_1995382_SNP [dm3] 2L_1995382_SNP [dm6]	C	T	1.939e^-4	0.804	INTERGENIC
2R	11816107	2R_11816107_SNP [dm3] 2R_15928602_SNP [dm6]	T	C	1.940e^-4	0.804	UPSTREAM bdg INTRON bdg
3R	26246903	3R_26246903_SNP [dm3] 3R_30421181_SNP [dm6]	G	A	1.950e^-4	0.804	START_GAINED CG42740 UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18010385	X_18010385_SNP [dm3] X_18116352_SNP [dm6]	G	A	1.951e^-4	0.804	INTRON wupA	regulatory region REDfly_CRMs
3R	13806509	3R_13806509_SNP [dm3] 3R_17980787_SNP [dm6]	G	T	1.955e^-4	0.804	INTRON cpo
2R	17145109	2R_17145109_SNP [dm3] 2R_21257604_SNP [dm6]	C	A	1.965e^-4	0.804	UTR_5_PRIME Rgk3 INTRON Rgk3
2L	5593042	2L_5593042_SNP [dm3] 2L_5593042_SNP [dm6]	G	T	1.967e^-4	0.804	INTERGENIC
2L	6447881	2L_6447881_SNP [dm3] 2L_6447881_SNP [dm6]	G	T	1.971e^-4	0.804	UPSTREAM CG9527 DOWNSTREAM retm INTRON CG9527	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5593073	2L_5593073_SNP [dm3] 2L_5593073_SNP [dm6]	T	G	1.984e^-4	0.804	INTERGENIC
2L	12718259	2L_12718259_SNP [dm3] 2L_12718259_SNP [dm6]	G	A	1.989e^-4	0.804	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
2R	15877278	2R_15877278_SNP [dm3] 2R_19989773_SNP [dm6]	T	G	1.993e^-4	0.804	INTERGENIC
2L	16818302	2L_16818302_SNP [dm3] 2L_16818302_SNP [dm6]	T	C	1.996e^-4	0.804	INTRON CG13280 & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
X	9944328	X_9944328_SNP [dm3] X_10050295_SNP [dm6]	C	A	2.008e^-4	0.804	SYNONYMOUS_CODING Cht6 DOWNSTREAM Yp2
3R	25358988	3R_25358988_SNP [dm3] 3R_29533266_SNP [dm6]	G	A	2.010e^-4	0.804	INTERGENIC
X	18012111	X_18012111_INS [dm3] X_18118078_INS [dm6]	G	GG	2.010e^-4	0.804	INTERGENIC
2R	11373123	2R_11373123_SNP [dm3] 2R_15485618_SNP [dm6]	C	A	2.011e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	12073891	2R_12073891_SNP [dm3] 2R_16186386_SNP [dm6]	T	A	2.017e^-4	0.804	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19024086	2R_19024086_SNP [dm3] 2R_23136563_SNP [dm6]	T	G	2.018e^-4	0.804	INTERGENIC
3L	1422547	3L_1422547_SNP [dm3] 3L_1422547_SNP [dm6]	T	C	2.018e^-4	0.804	SYNONYMOUS_CODING CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8987863	2L_8987863_SNP [dm3] 2L_8987863_SNP [dm6]	G	A	2.019e^-4	0.804	INTRON rost
2R	1133439	2R_1133439_DEL [dm3] 2R_5245934_DEL [dm6]	TG	T	2.019e^-4	0.804	INTRON Nipped-A	transposable element FlyBase
3L	9340568	3L_9340568_SNP [dm3] 3L_9347468_SNP [dm6]	A	G	2.022e^-4	0.804	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3R	19127380	3R_19127380_SNP [dm3] 3R_23301658_SNP [dm6]	C	T	2.027e^-4	0.804	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	2182114	2R_2182114_SNP [dm3] 2R_6294609_SNP [dm6]	T	A	2.032e^-4	0.804	INTERGENIC	transposable element FlyBase
3L	12830705	3L_12830705_SNP [dm3] 3L_12837605_SNP [dm6]	T	C	2.050e^-4	0.804	INTRON CG10960
2R	14085794	2R_14085794_SNP [dm3] 2R_18198289_SNP [dm6]	G	A	2.051e^-4	0.804	INTERGENIC
3L	5998084	3L_5998084_SNP [dm3] 3L_6004984_SNP [dm6]	A	G	2.051e^-4	0.804	INTRON PVRAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6058604	3L_6058604_SNP [dm3] 3L_6065504_SNP [dm6]	T	G	2.051e^-4	0.804	UPSTREAM CG42269 INTERGENIC
2R	12073825	2R_12073825_DEL [dm3] 2R_16186320_DEL [dm6]	CCTCAACGACGC...	A	2.053e^-4	0.804	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9277434	3L_9277434_DEL [dm3] 3L_9284334_DEL [dm6]	AA	A	2.061e^-4	0.804	INTRON GluRIB
2R	18094255	2R_18094255_SNP [dm3] 2R_22206750_SNP [dm6]	G	A	2.062e^-4	0.804	SYNONYMOUS_CODING CG3290	TF binding site mE1_TFBS_HSA
3R	27173917	3R_27173917_SNP [dm3] 3R_31348195_SNP [dm6]	G	C	2.066e^-4	0.804	INTRON CG34347	regulatory region REDfly_CRMs
2L	13703817	2L_13703817_SNP [dm3] 2L_13703817_SNP [dm6]	A	G	2.068e^-4	0.804	INTRON CG31814
3L	13254586	3L_13254586_SNP [dm3] 3L_13261486_SNP [dm6]	C	A	2.070e^-4	0.804	INTRON caps
2R	9806476	2R_9806476_SNP [dm3] 2R_13918971_SNP [dm6]	G	T	2.073e^-4	0.804	INTRON shot	TF binding site mE1_TFBS_Trl
3L	10360603	3L_10360603_SNP [dm3] 3L_10367503_SNP [dm6]	C	T	2.074e^-4	0.804	DOWNSTREAM CR44327 INTERGENIC
2R	16273957	2R_16273957_SNP [dm3] 2R_20386452_SNP [dm6]	C	T	2.083e^-4	0.804	INTERGENIC
2R	19573478	2R_19573478_SNP [dm3] 2R_23685955_SNP [dm6]	C	T	2.087e^-4	0.804	UPSTREAM l_2_efl INTRON St3
3R	18295041	3R_18295041_SNP [dm3] 3R_22469319_SNP [dm6]	A	G	2.090e^-4	0.804	START_GAINED Nrx-1 UTR_5_PRIME Nrx-1 UPSTREAM Nrx-1 INTRON Nrx-1
3R	10913525	3R_10913525_SNP [dm3] 3R_15087803_SNP [dm6]	A	T	2.099e^-4	0.804	INTRON CG6966
2R	17929699	2R_17929699_SNP [dm3] 2R_22042194_SNP [dm6]	A	G	2.099e^-4	0.804	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	2261630	3L_2261630_SNP [dm3] 3L_2261630_SNP [dm6]	A	C	2.104e^-4	0.804	INTRON oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9705962	2L_9705962_SNP [dm3] 2L_9705962_SNP [dm6]	A	G	2.107e^-4	0.804	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	5404803	2L_5404803_SNP [dm3] 2L_5404803_SNP [dm6]	A	C	2.109e^-4	0.804	UTR_5_PRIME H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	18174968	X_18174968_SNP [dm3] X_18280935_SNP [dm6]	C	G	2.110e^-4	0.804	INTRON upd3
3R	11811820	3R_11811820_SNP [dm3] 3R_15986098_SNP [dm6]	G	T	2.116e^-4	0.804	UPSTREAM srp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
X	17369389	X_17369389_SNP [dm3] X_17475356_SNP [dm6]	T	G	2.117e^-4	0.804	SPLICE_SITE_ACCEPTOR CG43658 INTRON CG43658
2R	9471726	2R_9471726_SNP [dm3] 2R_13584221_SNP [dm6]	A	G	2.119e^-4	0.804	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	13955027	2R_13955027_SNP [dm3] 2R_18067522_SNP [dm6]	G	T	2.123e^-4	0.804	INTRON CG34386
2R	14750013	2R_14750013_SNP [dm3] 2R_18862508_SNP [dm6]	C	T	2.125e^-4	0.804	UPSTREAM CG43069 & 1 other INTERGENIC
3L	12930487	3L_12930487_SNP [dm3] 3L_12937387_SNP [dm6]	C	A	2.128e^-4	0.804	INTERGENIC
2R	15444033	2R_15444033_SNP [dm3] 2R_19556528_SNP [dm6]	G	A	2.129e^-4	0.804	INTRON sm
2R	17647629	2R_17647629_SNP [dm3] 2R_21760124_SNP [dm6]	T	A	2.136e^-4	0.804	INTERGENIC
3R	17219161	3R_17219161_SNP [dm3] 3R_21393439_SNP [dm6]	A	G	2.145e^-4	0.804	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	1359906	2R_1359906_SNP [dm3] 2R_5472401_SNP [dm6]	C	G	2.147e^-4	0.804	INTRON CG30440
3L	10065595	3L_10065595_SNP [dm3] 3L_10072495_SNP [dm6]	T	G	2.151e^-4	0.804	DOWNSTREAM dpr6 INTRON dpr6
3R	22447533	3R_22447533_SNP [dm3] 3R_26621811_SNP [dm6]	T	C	2.160e^-4	0.804	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
3L	12206084	3L_12206084_SNP [dm3] 3L_12212984_SNP [dm6]	A	T	2.166e^-4	0.804	UTR_3_PRIME app INTRON app
2L	3971603	2L_3971603_SNP [dm3] 2L_3971603_SNP [dm6]	T	G	2.176e^-4	0.804	INTRON fred
3R	27139293	3R_27139293_SNP [dm3] 3R_31313571_SNP [dm6]	G	T	2.178e^-4	0.804	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10853842	3L_10853842_SNP [dm3] 3L_10860742_SNP [dm6]	A	T	2.190e^-4	0.804	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	25784643	3R_25784643_SNP [dm3] 3R_29958921_SNP [dm6]	A	C	2.194e^-4	0.804	INTRON TkR99D
3R	25784644	3R_25784644_SNP [dm3] 3R_29958922_SNP [dm6]	A	G	2.194e^-4	0.804	INTRON TkR99D
3L	9340574	3L_9340574_SNP [dm3] 3L_9347474_SNP [dm6]	A	T	2.194e^-4	0.804	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2L	9079049	2L_9079049_SNP [dm3] 2L_9079049_SNP [dm6]	G	C	2.196e^-4	0.804	INTERGENIC
3R	25261801	3R_25261801_SNP [dm3] 3R_29436079_SNP [dm6]	T	A	2.199e^-4	0.804	INTRON Ptp99A
2R	9732812	2R_9732812_SNP [dm3] 2R_13845307_SNP [dm6]	T	C	2.199e^-4	0.804	INTRON Syngr	TF binding site BDTNP1_TFBS_dl
3L	6488647	3L_6488647_SNP [dm3] 3L_6495547_SNP [dm6]	T	C	2.203e^-4	0.804	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	21457733	X_21457733_INS [dm3] X_21586706_INS [dm6]	A	AAA	2.217e^-4	0.804	INTERGENIC
X	2699719	X_2699719_SNP [dm3] X_2805686_SNP [dm6]	C	G	2.218e^-4	0.804	INTRON kirre
3L	18034996	3L_18034996_SNP [dm3] 3L_18041896_SNP [dm6]	G	A	2.225e^-4	0.804	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
X	9507797	X_9507797_SNP [dm3] X_9613764_SNP [dm6]	G	T	2.227e^-4	0.804	INTRON CG42797
3R	23893031	3R_23893031_SNP [dm3] 3R_28067309_SNP [dm6]	C	A	2.233e^-4	0.804	INTRON CG34362
X	18367526	X_18367526_SNP [dm3] X_18473493_SNP [dm6]	T	G	2.241e^-4	0.804	INTRON CG32547
3L	3100292	3L_3100292_SNP [dm3] 3L_3100292_SNP [dm6]	T	A	2.245e^-4	0.804	INTRON Cht7
2L	3372628	2L_3372628_SNP [dm3] 2L_3372628_SNP [dm6]	T	G	2.249e^-4	0.804	DOWNSTREAM CG15412 INTRON CG34394	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	11373346	2R_11373346_SNP [dm3] 2R_15485841_SNP [dm6]	C	T	2.252e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12178655	2L_12178655_SNP [dm3] 2L_12178655_SNP [dm6]	T	C	2.259e^-4	0.804	UPSTREAM atilla INTRON aret	TF binding site mE1_TFBS_HSA
3R	27138965	3R_27138965_SNP [dm3] 3R_31313243_SNP [dm6]	C	G	2.260e^-4	0.804	INTRON CG34347	TF binding site mE1_TFBS_inv
3R	10219310	3R_10219310_SNP [dm3] 3R_14393588_SNP [dm6]	G	A	2.269e^-4	0.804	SYNONYMOUS_CODING cv-c
2L	10869459	2L_10869459_SNP [dm3] 2L_10869459_SNP [dm6]	G	A	2.272e^-4	0.804	UPSTREAM CG12517 INTERGENIC
2L	10442241	2L_10442241_SNP [dm3] 2L_10442241_SNP [dm6]	T	C	2.274e^-4	0.804	UPSTREAM loh & 1 other INTERGENIC
3R	19365138	3R_19365138_SNP [dm3] 3R_23539416_SNP [dm6]	T	C	2.282e^-4	0.804	UPSTREAM CG10168 INTERGENIC
2R	2057028	2R_2057028_DEL [dm3] 2R_6169523_DEL [dm6]	GATT	G	2.283e^-4	0.804	UPSTREAM tRNA:R2:42Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14152953	2R_14152953_INS [dm3] 2R_18265448_INS [dm6]	A	AA	2.286e^-4	0.804	INTERGENIC
3R	10427653	3R_10427653_SNP [dm3] 3R_14601931_SNP [dm6]	C	A	2.290e^-4	0.804	UPSTREAM stumps INTRON stumps
2R	14163493	2R_14163493_SNP [dm3] 2R_18275988_SNP [dm6]	C	A	2.294e^-4	0.804	SYNONYMOUS_CODING Ote	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	1370576	2R_1370576_DEL [dm3] 2R_5483071_DEL [dm6]	CTGGGTACCTTAGAG...	C	2.298e^-4	0.804	INTRON CG30440	transposable element FlyBase
2R	17927467	2R_17927467_SNP [dm3] 2R_22039962_SNP [dm6]	T	G	2.312e^-4	0.804	UPSTREAM CG34370 INTERGENIC
3R	10573458	3R_10573458_SNP [dm3] 3R_14747736_SNP [dm6]	C	T	2.314e^-4	0.804	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	3561706	2L_3561706_SNP [dm3] 2L_3561706_SNP [dm6]	T	C	2.327e^-4	0.804	UPSTREAM CR44309 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16273974	2R_16273974_SNP [dm3] 2R_20386469_SNP [dm6]	T	A	2.338e^-4	0.804	INTERGENIC
2R	11372533	2R_11372533_SNP [dm3] 2R_15485028_SNP [dm6]	C	A	2.342e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	6699599	2L_6699599_SNP [dm3] 2L_6699599_SNP [dm6]	C	A	2.345e^-4	0.804	INTRON Tsp	TF binding site mE1_TFBS_cad
3L	11104958	3L_11104958_SNP [dm3] 3L_11111858_SNP [dm6]	G	A	2.347e^-4	0.804	SYNONYMOUS_CODING CG7638 DOWNSTREAM Sod
3L	4268791	3L_4268791_SNP [dm3] 3L_4268791_SNP [dm6]	A	G	2.354e^-4	0.804	INTRON CG1273	TF binding site BDTNP1_TFBS_dl
X	20469295	X_20469295_SNP [dm3] X_20598268_SNP [dm6]	C	T	2.355e^-4	0.804	INTRON RunxA
X	18454883	X_18454883_SNP [dm3] X_18560850_SNP [dm6]	C	G	2.356e^-4	0.804	INTRON Bx
3L	5086830	3L_5086830_DEL [dm3] 3L_5086830_DEL [dm6]	TTCATACA	CGAC	2.358e^-4	0.804	INTERGENIC
3R	26734940	3R_26734940_SNP [dm3] 3R_30909218_SNP [dm6]	G	A	2.375e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	1358362	2R_1358362_SNP [dm3] 2R_5470857_SNP [dm6]	A	G	2.380e^-4	0.804	INTRON CG30440	TF binding site mE1_TFBS_cad transposable element FlyBase
X	6814898	X_6814898_SNP [dm3] X_6920865_SNP [dm6]	G	T	2.383e^-4	0.804	INTRON CG14431
3R	27138387	3R_27138387_SNP [dm3] 3R_31312665_SNP [dm6]	G	A	2.386e^-4	0.804	INTRON CG34347
3R	9830509	3R_9830509_SNP [dm3] 3R_14004787_SNP [dm6]	C	G	2.395e^-4	0.804	INTRON rdx
2L	5265787	2L_5265787_SNP [dm3] 2L_5265787_SNP [dm6]	G	A	2.398e^-4	0.804	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	27145159	3R_27145159_SNP [dm3] 3R_31319437_SNP [dm6]	C	G	2.404e^-4	0.804	INTRON CG34347
2L	8770636	2L_8770636_SNP [dm3] 2L_8770636_SNP [dm6]	G	A	2.408e^-4	0.804	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
2R	18240196	2R_18240196_SNP [dm3] 2R_22352691_SNP [dm6]	C	T	2.412e^-4	0.804	INTRON Liprin-gamma
2L	19129279	2L_19129279_DEL [dm3] 2L_19129279_DEL [dm6]	TTATATCA	T	2.416e^-4	0.804	UTR_3_PRIME l_2_37Cd DOWNSTREAM Aats-asn	TF binding site mE1_TFBS_cad
3R	23983894	3R_23983894_INS [dm3] 3R_28158172_INS [dm6]	G	GTTTCTTTAG	2.420e^-4	0.804	INTRON CG34354	TF binding site mE1_TFBS_inv
3L	3158677	3L_3158677_SNP [dm3] 3L_3158677_SNP [dm6]	C	T	2.432e^-4	0.804	SYNONYMOUS_CODING NDUFS3 DOWNSTREAM BtbVII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3581285	3L_3581285_SNP [dm3] 3L_3581285_SNP [dm6]	C	G	2.435e^-4	0.804	INTRON Eip63E
3L	5144804	3L_5144804_SNP [dm3] 3L_5151704_SNP [dm6]	G	A	2.438e^-4	0.804	SPLICE_SITE_REGION Gen SYNONYMOUS_CODING Gen UPSTREAM Srp54k	TF binding site BDTNP1_TFBS_da
3L	1692112	3L_1692112_SNP [dm3] 3L_1692112_SNP [dm6]	G	T	2.448e^-4	0.804	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15534002	2L_15534002_SNP [dm3] 2L_15534002_SNP [dm6]	C	T	2.459e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1367135	2R_1367135_SNP [dm3] 2R_5479630_SNP [dm6]	G	T	2.460e^-4	0.804	INTRON CG30440	transposable element FlyBase
3R	27237993	3R_27237993_SNP [dm3] 3R_31412271_SNP [dm6]	A	C	2.462e^-4	0.804	INTRON Gprk2	TF binding site mE1_TFBS_cad
3L	3919225	3L_3919225_SNP [dm3] 3L_3919225_SNP [dm6]	G	C	2.463e^-4	0.804	INTRON Eip63F-1
3L	4268888	3L_4268888_SNP [dm3] 3L_4268888_SNP [dm6]	G	T	2.472e^-4	0.804	INTRON CG1273	TF binding site BDTNP1_TFBS_dl
3L	10360726	3L_10360726_SNP [dm3] 3L_10367626_SNP [dm6]	A	G	2.472e^-4	0.804	DOWNSTREAM CR44327 INTERGENIC
2L	10784600	2L_10784600_SNP [dm3] 2L_10784600_SNP [dm6]	G	A	2.477e^-4	0.804	DOWNSTREAM CR44582 INTRON CG31869
3R	25784264	3R_25784264_SNP [dm3] 3R_29958542_SNP [dm6]	A	C	2.477e^-4	0.804	INTRON TkR99D
2L	9491175	2L_9491175_INS [dm3] 2L_9491175_INS [dm6]	T	TGG	2.478e^-4	0.804	UTR_3_PRIME Gdi DOWNSTREAM Gdi
3R	10183666	3R_10183666_SNP [dm3] 3R_14357944_SNP [dm6]	C	T	2.478e^-4	0.804	DOWNSTREAM CG31320 INTRON NK7.1
X	4568288	X_4568288_DEL [dm3] X_4674255_DEL [dm6]	ATTCCGATTA	T	2.486e^-4	0.804	INTRON rap
3R	8471644	3R_8471644_SNP [dm3] 3R_12645922_SNP [dm6]	A	G	2.487e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	9340954	3L_9340954_SNP [dm3] 3L_9347854_SNP [dm6]	T	C	2.490e^-4	0.804	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
2R	11382815	2R_11382815_SNP [dm3] 2R_15495310_SNP [dm6]	G	A	2.492e^-4	0.804	INTRON CG12964
2R	8757630	2R_8757630_SNP [dm3] 2R_12870125_SNP [dm6]	T	G	2.501e^-4	0.804	UPSTREAM bic & 1 other DOWNSTREAM CR45140 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	8488468	3R_8488468_SNP [dm3] 3R_12662746_SNP [dm6]	T	G	2.503e^-4	0.804	UPSTREAM CG14395 & 1 other INTERGENIC
3R	8527107	3R_8527107_SNP [dm3] 3R_12701385_SNP [dm6]	T	C	2.508e^-4	0.804	INTRON Past1
2L	5848806	2L_5848806_SNP [dm3] 2L_5848806_SNP [dm6]	G	T	2.511e^-4	0.804	INTRON TrissinR
2L	8981631	2L_8981631_SNP [dm3] 2L_8981631_SNP [dm6]	A	G	2.520e^-4	0.804	DOWNSTREAM CG18662 INTRON CG13101
2R	1325455	2R_1325455_SNP [dm3] 2R_5437950_SNP [dm6]	T	A	2.521e^-4	0.804	INTRON laccase2
3L	8696567	3L_8696567_SNP [dm3] 3L_8703467_SNP [dm6]	T	A	2.521e^-4	0.804	INTERGENIC
2R	12073840	2R_12073840_SNP [dm3] 2R_16186335_SNP [dm6]	T	A	2.528e^-4	0.804	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	4231804	X_4231804_SNP [dm3] X_4337771_SNP [dm6]	A	G	2.530e^-4	0.804	INTRON norpA
3L	2545229	3L_2545229_SNP [dm3] 3L_2545229_SNP [dm6]	C	T	2.531e^-4	0.804	INTRON Spn
3R	9811496	3R_9811496_DEL [dm3] 3R_13985774_DEL [dm6]	TG	T	2.534e^-4	0.804	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	5331139	X_5331139_SNP [dm3] X_5437106_SNP [dm6]	G	A	2.535e^-4	0.804	INTERGENIC
2R	2075144	2R_2075144_SNP [dm3] 2R_6187639_SNP [dm6]	C	A	2.535e^-4	0.804	DOWNSTREAM Ptr INTRON Ptr
2L	5068319	2L_5068319_SNP [dm3] 2L_5068319_SNP [dm6]	A	G	2.536e^-4	0.804	SYNONYMOUS_CODING qtc UPSTREAM mir-2495	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11478100	3L_11478100_INS [dm3] 3L_11485000_INS [dm6]	G	GC	2.539e^-4	0.804	INTERGENIC
3L	20459595	3L_20459595_SNP [dm3] 3L_20466495_SNP [dm6]	G	A	2.543e^-4	0.804	UPSTREAM CG42764 & 1 other INTERGENIC
2R	9941405	2R_9941405_SNP [dm3] 2R_14053900_SNP [dm6]	A	G	2.544e^-4	0.804	INTRON mam
2R	6568910	2R_6568910_SNP [dm3] 2R_10681405_SNP [dm6]	A	C	2.555e^-4	0.804	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	16028242	3L_16028242_SNP [dm3] 3L_16035142_SNP [dm6]	C	A	2.562e^-4	0.804	UPSTREAM CG5895 DOWNSTREAM CG42716 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7615894	2L_7615894_SNP [dm3] 2L_7615894_SNP [dm6]	T	C	2.562e^-4	0.804	NON_SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
X	21056437	X_21056437_SNP [dm3] X_21185410_SNP [dm6]	A	G	2.569e^-4	0.804	INTERGENIC
2L	10442212	2L_10442212_SNP [dm3] 2L_10442212_SNP [dm6]	T	A	2.573e^-4	0.804	UPSTREAM loh & 1 other INTERGENIC
2L	10442215	2L_10442215_SNP [dm3] 2L_10442215_SNP [dm6]	T	A	2.573e^-4	0.804	UPSTREAM loh & 1 other INTERGENIC
2L	10442218	2L_10442218_SNP [dm3] 2L_10442218_SNP [dm6]	A	T	2.573e^-4	0.804	UPSTREAM loh & 1 other INTERGENIC
3R	23926095	3R_23926095_SNP [dm3] 3R_28100373_SNP [dm6]	A	T	2.583e^-4	0.804	INTERGENIC
2R	1308629	2R_1308629_SNP [dm3] 2R_5421124_SNP [dm6]	C	T	2.584e^-4	0.804	INTRON laccase2
3R	9811479	3R_9811479_DEL [dm3] 3R_13985757_DEL [dm6]	AA	A	2.595e^-4	0.804	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	12767017	2L_12767017_SNP [dm3] 2L_12767017_SNP [dm6]	T	A	2.608e^-4	0.804	INTERGENIC
X	5854445	X_5854445_SNP [dm3] X_5960412_SNP [dm6]	C	A	2.609e^-4	0.804	NON_SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10845227	3L_10845227_SNP [dm3] 3L_10852127_SNP [dm6]	T	G	2.617e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16774431	2L_16774431_SNP [dm3] 2L_16774431_SNP [dm6]	G	A	2.619e^-4	0.804	INTRON Mhc
3L	4268838	3L_4268838_SNP [dm3] 3L_4268838_SNP [dm6]	T	G	2.625e^-4	0.804	INTRON CG1273	TF binding site BDTNP1_TFBS_dl
X	10505188	X_10505188_SNP [dm3] X_10611155_SNP [dm6]	T	G	2.627e^-4	0.804	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_chinmo
3L	19630170	3L_19630170_SNP [dm3] 3L_19637070_SNP [dm6]	G	T	2.636e^-4	0.804	DOWNSTREAM CG8786 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	8758222	2R_8758222_SNP [dm3] 2R_12870717_SNP [dm6]	G	T	2.637e^-4	0.804	SYNONYMOUS_CODING bic DOWNSTREAM CR45140	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17948316	2R_17948316_SNP [dm3] 2R_22060811_SNP [dm6]	G	A	2.651e^-4	0.804	UPSTREAM Snp & 1 other INTRON CG13501	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	18227883	2R_18227883_SNP [dm3] 2R_22340378_SNP [dm6]	G	T	2.657e^-4	0.804	INTRON Liprin-gamma	TF binding site mE1_TFBS_chinmo
3L	3100303	3L_3100303_SNP [dm3] 3L_3100303_SNP [dm6]	T	C	2.658e^-4	0.804	INTRON Cht7
2L	5404660	2L_5404660_SNP [dm3] 2L_5404660_SNP [dm6]	A	G	2.664e^-4	0.804	UTR_5_PRIME H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	8241547	2L_8241547_SNP [dm3] 2L_8241547_SNP [dm6]	C	A	2.664e^-4	0.804	NON_SYNONYMOUS_CODING Spn28F UPSTREAM CR43262
3L	10357880	3L_10357880_SNP [dm3] 3L_10364780_SNP [dm6]	G	C	2.672e^-4	0.804	UPSTREAM mir-276a EXON CR44327
3L	3270208	3L_3270208_SNP [dm3] 3L_3270208_SNP [dm6]	A	G	2.673e^-4	0.804	UPSTREAM CG14960 INTERGENIC
2R	11374522	2R_11374522_SNP [dm3] 2R_15487017_SNP [dm6]	G	T	2.673e^-4	0.804	SYNONYMOUS_CODING CG12964	TF binding site mE1_TFBS_chinmo
3L	10066439	3L_10066439_SNP [dm3] 3L_10073339_SNP [dm6]	A	C	2.674e^-4	0.804	INTRON dpr6
2L	4263681	2L_4263681_SNP [dm3] 2L_4263681_SNP [dm6]	C	T	2.676e^-4	0.804	INTERGENIC
3L	11341767	3L_11341767_SNP [dm3] 3L_11348667_SNP [dm6]	G	T	2.688e^-4	0.804	DOWNSTREAM CR45251 INTERGENIC
3L	13481424	3L_13481424_SNP [dm3] 3L_13488324_SNP [dm6]	C	A	2.689e^-4	0.804	INTRON Tgi	TF binding site BDTNP1_TFBS_twi
2L	3899844	2L_3899844_SNP [dm3] 2L_3899844_SNP [dm6]	T	C	2.690e^-4	0.804	INTRON capu
3L	9258801	3L_9258801_SNP [dm3] 3L_9265701_SNP [dm6]	A	T	2.698e^-4	0.804	INTRON GluRIB
2R	14749941	2R_14749941_SNP [dm3] 2R_18862436_SNP [dm6]	A	T	2.702e^-4	0.804	UPSTREAM CG43069 & 1 other INTERGENIC
X	19547806	X_19547806_SNP [dm3] X_19653773_SNP [dm6]	T	C	2.707e^-4	0.804	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5405804	2L_5405804_SNP [dm3] 2L_5405804_SNP [dm6]	A	T	2.707e^-4	0.804	INTRON H15	TF binding site BDTNP1_TFBS_twi
2L	7870213	2L_7870213_SNP [dm3] 2L_7870213_SNP [dm6]	G	C	2.713e^-4	0.804	INTRON Proc
3R	18392927	3R_18392927_SNP [dm3] 3R_22567205_SNP [dm6]	T	C	2.718e^-4	0.804	INTERGENIC
2R	10341496	2R_10341496_SNP [dm3] 2R_14453991_SNP [dm6]	G	C	2.720e^-4	0.804	INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21173020	X_21173020_SNP [dm3] X_21301993_SNP [dm6]	T	G	2.721e^-4	0.804	INTRON CG1718
3L	9340678	3L_9340678_SNP [dm3] 3L_9347578_SNP [dm6]	G	A	2.728e^-4	0.804	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	9375484	3L_9375484_SNP [dm3] 3L_9382384_SNP [dm6]	G	A	2.729e^-4	0.804	SYNONYMOUS_CODING Hsp23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14830188	2L_14830188_SNP [dm3] 2L_14830188_SNP [dm6]	C	A	2.732e^-4	0.804	INTERGENIC
3L	12930570	3L_12930570_SNP [dm3] 3L_12937470_SNP [dm6]	G	T	2.739e^-4	0.804	INTERGENIC
2R	6158702	2R_6158702_SNP [dm3] 2R_10271197_SNP [dm6]	T	G	2.740e^-4	0.804	UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_inv
3R	9699263	3R_9699263_SNP [dm3] 3R_13873541_SNP [dm6]	T	C	2.746e^-4	0.804	SYNONYMOUS_CODING E5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9340690	3L_9340690_DEL [dm3] 3L_9347590_DEL [dm6]	TCAAAGTT	T	2.747e^-4	0.804	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2R	8672586	2R_8672586_SNP [dm3] 2R_12785081_SNP [dm6]	G	A	2.760e^-4	0.804	INTRON sca EXON CR45137	regulatory region REDfly_CRMs
2R	9169279	2R_9169279_SNP [dm3] 2R_13281774_SNP [dm6]	C	T	2.767e^-4	0.804	INTRON Dh31-R
3R	27529214	3R_27529214_SNP [dm3] 3R_31703492_SNP [dm6]	C	A	2.772e^-4	0.804	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8766283	3L_8766283_SNP [dm3] 3L_8773183_SNP [dm6]	G	T	2.774e^-4	0.804	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
2L	5685161	2L_5685161_SNP [dm3] 2L_5685161_SNP [dm6]	A	T	2.778e^-4	0.804	INTERGENIC
2L	10984918	2L_10984918_SNP [dm3] 2L_10984918_SNP [dm6]	T	G	2.779e^-4	0.804	INTRON piwi
3R	19640066	3R_19640066_SNP [dm3] 3R_23814344_SNP [dm6]	C	T	2.788e^-4	0.804	SYNONYMOUS_CODING eIF4G2 INTRON CG34355 & 1 other
3R	14464939	3R_14464939_SNP [dm3] 3R_18639217_SNP [dm6]	T	A	2.793e^-4	0.804	INTRON qin & 1 other
3R	22447383	3R_22447383_SNP [dm3] 3R_26621661_SNP [dm6]	A	T	2.795e^-4	0.804	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
3R	13112813	3R_13112813_SNP [dm3] 3R_17287091_SNP [dm6]	A	T	2.798e^-4	0.804	UPSTREAM CR43490 EXON CR43489
3R	954414	3R_954414_SNP [dm3] 3R_5128692_SNP [dm6]	C	T	2.800e^-4	0.804	SYNONYMOUS_CODING CG12007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10051403	3L_10051403_DEL [dm3] 3L_10058303_DEL [dm6]	GG	G	2.805e^-4	0.804	INTRON dpr6
3L	9338368	3L_9338368_DEL [dm3] 3L_9345268_DEL [dm6]	TATGT	T	2.809e^-4	0.804	INTRON PGRP-LC
3R	10573227	3R_10573227_SNP [dm3] 3R_14747505_SNP [dm6]	C	A	2.811e^-4	0.804	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
2R	17433764	2R_17433764_SNP [dm3] 2R_21546259_SNP [dm6]	G	A	2.822e^-4	0.804	UPSTREAM Egfr INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Trl
3R	7648561	3R_7648561_SNP [dm3] 3R_11822839_SNP [dm6]	G	A	2.826e^-4	0.804	UTR_3_PRIME CG6959 UPSTREAM CG6950
2L	7870217	2L_7870217_SNP [dm3] 2L_7870217_SNP [dm6]	A	T	2.839e^-4	0.804	INTRON Proc
X	15154379	X_15154379_SNP [dm3] X_15260346_SNP [dm6]	G	C	2.841e^-4	0.804	INTERGENIC
3R	7643493	3R_7643493_SNP [dm3] 3R_11817771_SNP [dm6]	C	T	2.842e^-4	0.804	INTRON glo
3L	9725571	3L_9725571_SNP [dm3] 3L_9732471_SNP [dm6]	T	C	2.843e^-4	0.804	INTRON CG6749	TF binding site mE1_TFBS_cad
2L	7036952	2L_7036952_SNP [dm3] 2L_7036952_SNP [dm6]	C	T	2.846e^-4	0.804	SYNONYMOUS_CODING CG11266 UTR_3_PRIME CG11266 UPSTREAM milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12160880	X_12160880_SNP [dm3] X_12266847_SNP [dm6]	C	A	2.850e^-4	0.804	INTRON Ten-a	TF binding site mE1_TFBS_inv
3R	25290899	3R_25290899_SNP [dm3] 3R_29465177_SNP [dm6]	G	T	2.852e^-4	0.804	INTRON Ptp99A
X	11679846	X_11679846_SNP [dm3] X_11785813_SNP [dm6]	T	C	2.871e^-4	0.804	INTERGENIC
3R	19640266	3R_19640266_SNP [dm3] 3R_23814544_SNP [dm6]	T	C	2.873e^-4	0.804	NON_SYNONYMOUS_CODING eIF4G2 INTRON CG34355 & 1 other
2L	16821063	2L_16821063_SNP [dm3] 2L_16821063_SNP [dm6]	T	C	2.894e^-4	0.804	UTR_5_PRIME CG13280 DOWNSTREAM Cas INTRON mdy
3L	14276286	3L_14276286_SNP [dm3] 3L_14283186_SNP [dm6]	C	G	2.895e^-4	0.804	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24836863	3R_24836863_SNP [dm3] 3R_29011141_SNP [dm6]	C	T	2.895e^-4	0.804	INTRON wat
3L	3291005	3L_3291005_SNP [dm3] 3L_3291005_SNP [dm6]	G	A	2.905e^-4	0.804	UPSTREAM CG12009 DOWNSTREAM CG12017 INTERGENIC
3L	14052304	3L_14052304_SNP [dm3] 3L_14059204_SNP [dm6]	C	A	2.907e^-4	0.804	INTRON CG32138
2R	2517363	2R_2517363_SNP [dm3] 2R_6629858_SNP [dm6]	G	A	2.913e^-4	0.804	INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20357006	2R_20357006_SNP [dm3] 2R_24469483_SNP [dm6]	A	G	2.920e^-4	0.804	INTRON CG13579
3R	10984918	3R_10984918_SNP [dm3] 3R_15159196_SNP [dm6]	T	G	2.929e^-4	0.804	INTRON Gyc88E
3L	2362702	3L_2362702_SNP [dm3] 3L_2362702_SNP [dm6]	T	G	2.930e^-4	0.804	DOWNSTREAM CG13801 INTERGENIC
3R	25089214	3R_25089214_SNP [dm3] 3R_29263492_SNP [dm6]	A	C	2.934e^-4	0.804	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	8412641	2R_8412641_INS [dm3] 2R_12525136_INS [dm6]	C	CT	2.940e^-4	0.804	INTERGENIC
3R	10226309	3R_10226309_SNP [dm3] 3R_14400587_SNP [dm6]	G	A	2.944e^-4	0.804	INTRON cv-c
2R	8629904	2R_8629904_SNP [dm3] 2R_12742399_SNP [dm6]	C	T	2.947e^-4	0.804	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19799058	3R_19799058_SNP [dm3] 3R_23973336_SNP [dm6]	T	C	2.952e^-4	0.804	INTRON CG31140
2L	5558478	2L_5558478_SNP [dm3] 2L_5558478_SNP [dm6]	G	T	2.953e^-4	0.804	SYNONYMOUS_CODING GluRIIA UPSTREAM GluRIIB	TF binding site mE1_TFBS_chinmo
X	20605678	X_20605678_SNP [dm3] X_20734651_SNP [dm6]	A	G	2.954e^-4	0.804	UTR_3_PRIME CG1324 DOWNSTREAM CG1324	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	10354747	3L_10354747_SNP [dm3] 3L_10361647_SNP [dm6]	A	C	2.956e^-4	0.804	EXON CR44327	TF binding site mE1_TFBS_cad
2L	5713024	2L_5713024_SNP [dm3] 2L_5713024_SNP [dm6]	C	T	2.958e^-4	0.804	SYNONYMOUS_CODING CG7236	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7193322	3L_7193322_SNP [dm3] 3L_7200222_SNP [dm6]	T	G	2.959e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25046946	3R_25046946_SNP [dm3] 3R_29221224_SNP [dm6]	G	A	2.969e^-4	0.804	SYNONYMOUS_CODING Ef1gamma DOWNSTREAM CG1458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26743239	3R_26743239_SNP [dm3] 3R_30917517_SNP [dm6]	A	C	2.978e^-4	0.804	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	553874	2L_553874_SNP [dm3] 2L_553874_SNP [dm6]	T	G	2.978e^-4	0.804	UTR_3_PRIME rempA UPSTREAM Ets21C
3L	6820663	3L_6820663_SNP [dm3] 3L_6827563_SNP [dm6]	G	C	2.983e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12032934	2R_12032934_SNP [dm3] 2R_16145429_SNP [dm6]	C	T	2.984e^-4	0.804	SYNONYMOUS_CODING Aats-cys DOWNSTREAM Ext2
3L	11368547	3L_11368547_SNP [dm3] 3L_11375447_SNP [dm6]	T	C	2.986e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5609677	2L_5609677_SNP [dm3] 2L_5609677_SNP [dm6]	C	T	2.991e^-4	0.804	INTRON CG14010
2R	16828814	2R_16828814_SNP [dm3] 2R_20941309_SNP [dm6]	C	T	3.002e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9102441	2L_9102441_SNP [dm3] 2L_9102441_SNP [dm6]	G	T	3.008e^-4	0.804	INTERGENIC
3R	25238121	3R_25238121_SNP [dm3] 3R_29412399_SNP [dm6]	A	G	3.009e^-4	0.804	INTRON Ptp99A
3R	20352479	3R_20352479_SNP [dm3] 3R_24526757_SNP [dm6]	G	A	3.021e^-4	0.804	NON_SYNONYMOUS_CODING CG13618
2R	1358761	2R_1358761_SNP [dm3] 2R_5471256_SNP [dm6]	A	G	3.023e^-4	0.804	INTRON CG30440	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	7993412	3L_7993412_SNP [dm3] 3L_8000312_SNP [dm6]	G	C	3.028e^-4	0.804	INTRON nmo
2L	9490802	2L_9490802_DEL [dm3] 2L_9490802_DEL [dm6]	CTTATGGTGCGCTTCGTC...	C	3.031e^-4	0.804	DOWNSTREAM Gdi INTERGENIC
3L	14093595	3L_14093595_SNP [dm3] 3L_14100495_SNP [dm6]	A	G	3.032e^-4	0.804	INTERGENIC
X	5852956	X_5852956_SNP [dm3] X_5958923_SNP [dm6]	C	T	3.032e^-4	0.804	SYNONYMOUS_CODING fs_1_M3 DOWNSTREAM CG6067	TF binding site mE1_TFBS_HSA
2L	9076552	2L_9076552_SNP [dm3] 2L_9076552_SNP [dm6]	T	C	3.033e^-4	0.804	UPSTREAM CG12439 INTERGENIC
3R	23900164	3R_23900164_SNP [dm3] 3R_28074442_SNP [dm6]	T	A	3.034e^-4	0.804	INTRON CG34362	TF binding site mE1_TFBS_chinmo
2L	9490931	2L_9490931_SNP [dm3] 2L_9490931_SNP [dm6]	A	G	3.038e^-4	0.804	DOWNSTREAM Gdi INTERGENIC
2R	14168967	2R_14168967_SNP [dm3] 2R_18281462_SNP [dm6]	T	C	3.042e^-4	0.804	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6315296	3L_6315296_SNP [dm3] 3L_6322196_SNP [dm6]	T	A	3.046e^-4	0.804	DOWNSTREAM Or65a INTERGENIC
2L	1626479	2L_1626479_DEL [dm3] 2L_1626479_DEL [dm6]	AATGAA	A	3.046e^-4	0.804	UPSTREAM CR44603 INTERGENIC
3L	14233402	3L_14233402_SNP [dm3] 3L_14240302_SNP [dm6]	C	A	3.046e^-4	0.804	UPSTREAM CR45399 INTERGENIC
2L	5405730	2L_5405730_SNP [dm3] 2L_5405730_SNP [dm6]	G	A	3.052e^-4	0.804	INTRON H15
2L	10746810	2L_10746810_SNP [dm3] 2L_10746810_SNP [dm6]	C	G	3.055e^-4	0.804	INTRON CG17124	TF binding site BDTNP1_TFBS_twi
X	21457547	X_21457547_SNP [dm3] X_21586520_SNP [dm6]	G	C	3.062e^-4	0.804	INTERGENIC
3R	25946483	3R_25946483_SNP [dm3] 3R_30120761_SNP [dm6]	T	A	3.063e^-4	0.804	UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3628612	2L_3628612_SNP [dm3] 2L_3628612_SNP [dm6]	G	T	3.065e^-4	0.804	INTRON for	TF binding site BDTNP1_TFBS_twi
2L	16784140	2L_16784140_SNP [dm3] 2L_16784140_SNP [dm6]	T	G	3.069e^-4	0.804	INTRON Mhc	TF binding site mE1_TFBS_cad
2R	18988057	2R_18988057_SNP [dm3] 2R_23100534_SNP [dm6]	T	C	3.073e^-4	0.804	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2605498	X_2605498_SNP [dm3] X_2711465_SNP [dm6]	G	T	3.073e^-4	0.804	SYNONYMOUS_CODING CG2681 DOWNSTREAM CG2685	TF binding site mE1_TFBS_cad
3L	9340431	3L_9340431_DEL [dm3] 3L_9347331_DEL [dm6]	AATATGATA	A	3.074e^-4	0.804	DOWNSTREAM PGRP-LC INTRON PGRP-LC
X	16061106	X_16061106_SNP [dm3] X_16167073_SNP [dm6]	G	A	3.081e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	931772	2L_931772_SNP [dm3] 2L_931772_SNP [dm6]	T	G	3.086e^-4	0.804	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15304571	3R_15304571_SNP [dm3] 3R_19478849_SNP [dm6]	A	G	3.087e^-4	0.804	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9342664	3L_9342664_DEL [dm3] 3L_9349564_DEL [dm6]	CAGAAATAAACAACAAC...	C	3.096e^-4	0.804	UPSTREAM PGRP-LF INTERGENIC
3R	13197670	3R_13197670_SNP [dm3] 3R_17371948_SNP [dm6]	G	T	3.098e^-4	0.804	UPSTREAM CR44256 INTERGENIC
2R	1297884	2R_1297884_SNP [dm3] 2R_5410379_SNP [dm6]	G	T	3.102e^-4	0.804	INTERGENIC
3L	13298659	3L_13298659_SNP [dm3] 3L_13305559_SNP [dm6]	A	G	3.110e^-4	0.804	INTERGENIC
3L	15262423	3L_15262423_SNP [dm3] 3L_15269323_SNP [dm6]	T	A	3.113e^-4	0.804	INTERGENIC
2L	16833073	2L_16833073_SNP [dm3] 2L_16833073_SNP [dm6]	G	A	3.114e^-4	0.804	SYNONYMOUS_CODING CG13282 DOWNSTREAM CG31739
2L	10247341	2L_10247341_SNP [dm3] 2L_10247341_SNP [dm6]	A	G	3.116e^-4	0.804	UPSTREAM chico DOWNSTREAM bsk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6672526	X_6672526_SNP [dm3] X_6778493_SNP [dm6]	G	C	3.117e^-4	0.804	INTRON shf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	16872165	3R_16872165_SNP [dm3] 3R_21046443_SNP [dm6]	A	G	3.119e^-4	0.804	SYNONYMOUS_CODING CG31207 UPSTREAM CG31189	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12935193	3L_12935193_SNP [dm3] 3L_12942093_SNP [dm6]	A	C	3.122e^-4	0.804	INTERGENIC
X	18017185	X_18017185_SNP [dm3] X_18123152_SNP [dm6]	A	G	3.122e^-4	0.804	DOWNSTREAM CR45606 INTERGENIC
3L	9340699	3L_9340699_INS [dm3] 3L_9347599_INS [dm6]	T	TGTATA	3.123e^-4	0.804	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3R	18939807	3R_18939807_SNP [dm3] 3R_23114085_SNP [dm6]	A	T	3.125e^-4	0.804	UTR_3_PRIME Rassf
X	9971799	X_9971799_SNP [dm3] X_10077766_SNP [dm6]	A	T	3.130e^-4	0.804	INTRON ZAP3
2R	10950010	2R_10950010_SNP [dm3] 2R_15062505_SNP [dm6]	A	G	3.139e^-4	0.804	INTERGENIC
3L	13926300	3L_13926300_SNP [dm3] 3L_13933200_SNP [dm6]	C	T	3.140e^-4	0.804	SYNONYMOUS_CODING Gl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	1036620	2L_1036620_SNP [dm3] 2L_1036620_SNP [dm6]	C	T	3.142e^-4	0.804	UPSTREAM CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_twi
X	16813936	X_16813936_SNP [dm3] X_16919903_SNP [dm6]	G	T	3.146e^-4	0.804	INTRON CG4928
2R	5943130	2R_5943130_DEL [dm3] 2R_10055625_DEL [dm6]	TA	T	3.158e^-4	0.804	INTRON magu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	1372452	2R_1372452_SNP [dm3] 2R_5484947_SNP [dm6]	A	T	3.158e^-4	0.804	INTRON CG30440
2R	1372453	2R_1372453_SNP [dm3] 2R_5484948_SNP [dm6]	A	T	3.158e^-4	0.804	INTRON CG30440
2L	9106283	2L_9106283_DEL [dm3] 2L_9106283_DEL [dm6]	CACAG	C	3.164e^-4	0.804	INTERGENIC
2R	10574670	2R_10574670_INS [dm3] 2R_14687165_INS [dm6]	TG	ACACA	3.164e^-4	0.804	INTRON mspo
2R	18984685	2R_18984685_SNP [dm3] 2R_23097162_SNP [dm6]	G	A	3.166e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	25946474	3R_25946474_SNP [dm3] 3R_30120752_SNP [dm6]	C	T	3.176e^-4	0.804	SYNONYMOUS_CODING sima UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18226386	2R_18226386_SNP [dm3] 2R_22338881_SNP [dm6]	G	A	3.180e^-4	0.804	SYNONYMOUS_CODING Liprin-gamma
2R	784211	2R_784211_SNP [dm3] 2R_4896706_SNP [dm6]	G	A	3.190e^-4	0.804	INTRON CG44102	transposable element FlyBase
2R	784212	2R_784212_SNP [dm3] 2R_4896707_SNP [dm6]	G	T	3.190e^-4	0.804	INTRON CG44102	transposable element FlyBase
3R	19226021	3R_19226021_SNP [dm3] 3R_23400299_SNP [dm6]	A	T	3.193e^-4	0.804	UPSTREAM CR44323 INTERGENIC
2R	14568868	2R_14568868_SNP [dm3] 2R_18681363_SNP [dm6]	G	C	3.193e^-4	0.804	SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435 UPSTREAM CG44435	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14209692	2L_14209692_SNP [dm3] 2L_14209692_SNP [dm6]	C	T	3.198e^-4	0.804	INTRON Dyrk2
2R	8846299	2R_8846299_SNP [dm3] 2R_12958794_SNP [dm6]	A	T	3.201e^-4	0.804	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6708888	2L_6708888_SNP [dm3] 2L_6708888_SNP [dm6]	A	C	3.203e^-4	0.804	START_GAINED Tsp UTR_5_PRIME Tsp UPSTREAM Tsp INTRON Tsp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21456807	X_21456807_SNP [dm3] X_21585780_SNP [dm6]	A	C	3.210e^-4	0.804	INTERGENIC	transposable element FlyBase
X	20469250	X_20469250_SNP [dm3] X_20598223_SNP [dm6]	C	T	3.219e^-4	0.804	INTRON RunxA
X	9569807	X_9569807_INS [dm3] X_9675774_INS [dm6]	T	TTT	3.222e^-4	0.804	INTRON nej	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	10785375	3L_10785375_SNP [dm3] 3L_10792275_SNP [dm6]	T	C	3.224e^-4	0.804	INTERGENIC
3L	9277662	3L_9277662_SNP [dm3] 3L_9284562_SNP [dm6]	G	C	3.230e^-4	0.804	INTRON GluRIB
3L	12930632	3L_12930632_SNP [dm3] 3L_12937532_SNP [dm6]	A	G	3.239e^-4	0.804	INTERGENIC
2L	17169777	2L_17169777_SNP [dm3] 2L_17169777_SNP [dm6]	T	A	3.243e^-4	0.804	INTRON beat-IIIa & 1 other
3R	15280332	3R_15280332_SNP [dm3] 3R_19454610_SNP [dm6]	A	T	3.243e^-4	0.804	INTRON CG31221
3R	18323508	3R_18323508_SNP [dm3] 3R_22497786_SNP [dm6]	C	G	3.249e^-4	0.804	INTRON Octbeta1R
2R	19387588	2R_19387588_SNP [dm3] 2R_23500065_SNP [dm6]	A	G	3.251e^-4	0.804	NON_SYNONYMOUS_CODING CG13558	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17644044	2R_17644044_SNP [dm3] 2R_21756539_SNP [dm6]	T	A	3.252e^-4	0.804	UPSTREAM Grx-1 INTERGENIC
3R	14956730	3R_14956730_SNP [dm3] 3R_19131008_SNP [dm6]	T	C	3.255e^-4	0.804	INTRON CG6040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18444335	2R_18444335_SNP [dm3] 2R_22556830_SNP [dm6]	G	C	3.258e^-4	0.804	INTRON px	TF binding site mE1_TFBS_cad
3R	22089217	3R_22089217_SNP [dm3] 3R_26263495_SNP [dm6]	T	A	3.259e^-4	0.804	INTRON CG6154
2R	18200409	2R_18200409_SNP [dm3] 2R_22312904_SNP [dm6]	C	A	3.263e^-4	0.804	UPSTREAM wdp EXON CR44758
2L	16855827	2L_16855827_SNP [dm3] 2L_16855827_SNP [dm6]	A	T	3.275e^-4	0.804	INTRON CG31809	transposable element FlyBase
3R	15757621	3R_15757621_SNP [dm3] 3R_19931899_SNP [dm6]	A	T	3.301e^-4	0.804	UTR_3_PRIME mira DOWNSTREAM mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4230498	X_4230498_SNP [dm3] X_4336465_SNP [dm6]	T	C	3.302e^-4	0.804	INTRON norpA
3L	19633165	3L_19633165_SNP [dm3] 3L_19640065_SNP [dm6]	T	G	3.303e^-4	0.804	SYNONYMOUS_CODING CG8786 DOWNSTREAM CG8786
3R	12235901	3R_12235901_SNP [dm3] 3R_16410179_SNP [dm6]	G	A	3.312e^-4	0.804	INTERGENIC
2R	1371373	2R_1371373_SNP [dm3] 2R_5483868_SNP [dm6]	C	T	3.317e^-4	0.804	NON_SYNONYMOUS_CODING CG30440
3L	7027467	3L_7027467_SNP [dm3] 3L_7034367_SNP [dm6]	T	A	3.323e^-4	0.804	INTRON Mp
3R	16427813	3R_16427813_SNP [dm3] 3R_20602091_SNP [dm6]	T	A	3.329e^-4	0.804	INTRON bon	transposable element FlyBase
3L	10660316	3L_10660316_DEL [dm3] 3L_10667216_DEL [dm6]	ACTTCTATAAA...	A	3.337e^-4	0.804	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	9697195	3L_9697195_INS [dm3] 3L_9704095_INS [dm6]	T	TAAAA	3.337e^-4	0.804	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10912669	X_10912669_SNP [dm3] X_11018636_SNP [dm6]	G	A	3.344e^-4	0.804	INTRON CG42339
3R	17197321	3R_17197321_SNP [dm3] 3R_21371599_SNP [dm6]	A	G	3.352e^-4	0.804	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	16273977	2R_16273977_SNP [dm3] 2R_20386472_SNP [dm6]	A	G	3.353e^-4	0.804	INTERGENIC
3L	14420578	3L_14420578_SNP [dm3] 3L_14427478_SNP [dm6]	G	A	3.354e^-4	0.804	UPSTREAM bbg INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17569064	2R_17569064_SNP [dm3] 2R_21681559_SNP [dm6]	T	G	3.357e^-4	0.804	INTRON CG30263
X	18453062	X_18453062_INS [dm3] X_18559029_INS [dm6]	C	CTGCCTTGAGGAGC...	3.358e^-4	0.804	INTRON Bx
3R	25087011	3R_25087011_SNP [dm3] 3R_29261289_SNP [dm6]	C	T	3.365e^-4	0.804	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	7679969	3R_7679969_SNP [dm3] 3R_11854247_SNP [dm6]	A	G	3.375e^-4	0.804	INTRON CG6959
2L	9941770	2L_9941770_SNP [dm3] 2L_9941770_SNP [dm6]	G	A	3.382e^-4	0.804	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619 DOWNSTREAM CG4619	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25261849	3R_25261849_SNP [dm3] 3R_29436127_SNP [dm6]	T	C	3.383e^-4	0.804	INTRON Ptp99A
3L	16627708	3L_16627708_SNP [dm3] 3L_16634608_SNP [dm6]	C	A	3.389e^-4	0.804	INTRON Abl
3R	23825242	3R_23825242_SNP [dm3] 3R_27999520_SNP [dm6]	G	A	3.389e^-4	0.804	INTERGENIC
X	21455563	X_21455563_SNP [dm3] X_21584536_SNP [dm6]	G	A	3.391e^-4	0.804	DOWNSTREAM CR44711 EXON CR44711
2L	5347988	2L_5347988_SNP [dm3] 2L_5347988_SNP [dm6]	A	C	3.392e^-4	0.804	INTRON nompC
2R	11373442	2R_11373442_SNP [dm3] 2R_15485937_SNP [dm6]	A	T	3.398e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12930623	3L_12930623_SNP [dm3] 3L_12937523_SNP [dm6]	T	C	3.424e^-4	0.804	INTERGENIC
2L	14543842	2L_14543842_SNP [dm3] 2L_14543842_SNP [dm6]	T	C	3.429e^-4	0.804	INTERGENIC
3R	13773982	3R_13773982_SNP [dm3] 3R_17948260_SNP [dm6]	G	A	3.433e^-4	0.804	INTRON cpo
2L	3673730	2L_3673730_SNP [dm3] 2L_3673730_SNP [dm6]	T	C	3.437e^-4	0.804	INTRON CG34340
X	21139200	X_21139200_SNP [dm3] X_21268173_SNP [dm6]	T	C	3.439e^-4	0.804	INTRON CG32521
3R	24816190	3R_24816190_SNP [dm3] 3R_28990468_SNP [dm6]	G	C	3.441e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	27072933	3R_27072933_SNP [dm3] 3R_31247211_SNP [dm6]	C	A	3.442e^-4	0.804	INTRON qless
X	15665969	X_15665969_SNP [dm3] X_15771936_SNP [dm6]	G	C	3.445e^-4	0.804	NON_SYNONYMOUS_CODING CG33172
3R	17037071	3R_17037071_SNP [dm3] 3R_21211349_SNP [dm6]	T	C	3.457e^-4	0.804	INTRON SNF4Agamma
3R	25359025	3R_25359025_DEL [dm3] 3R_29533303_DEL [dm6]	AG	A	3.467e^-4	0.804	INTERGENIC
3R	25301278	3R_25301278_SNP [dm3] 3R_29475556_SNP [dm6]	C	T	3.469e^-4	0.804	INTRON Ptp99A
3R	13179223	3R_13179223_DEL [dm3] 3R_17353501_DEL [dm6]	CGGGTAGCCCAGGACCCACT...	C	3.484e^-4	0.804	INTRON beat-IIa
2L	6854235	2L_6854235_SNP [dm3] 2L_6854235_SNP [dm6]	G	A	3.486e^-4	0.804	UTR_5_PRIME l_2_k09022 DOWNSTREAM Rca1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9706602	2L_9706602_SNP [dm3] 2L_9706602_SNP [dm6]	G	T	3.488e^-4	0.804	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	10066407	3L_10066407_DEL [dm3] 3L_10073307_DEL [dm6]	TAC	A	3.489e^-4	0.804	INTRON dpr6
X	2984589	X_2984589_SNP [dm3] X_3090556_SNP [dm6]	G	T	3.491e^-4	0.804	INTRON kirre	regulatory region REDfly_CRMs
2L	9950535	2L_9950535_SNP [dm3] 2L_9950535_SNP [dm6]	C	T	3.497e^-4	0.804	UPSTREAM mir-87 INTERGENIC
2R	14557155	2R_14557155_SNP [dm3] 2R_18669650_SNP [dm6]	G	A	3.510e^-4	0.804	INTRON edl
2R	11373269	2R_11373269_SNP [dm3] 2R_15485764_SNP [dm6]	A	C	3.515e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	1361073	2R_1361073_SNP [dm3] 2R_5473568_SNP [dm6]	C	T	3.520e^-4	0.804	INTRON CG30440
2L	12997692	2L_12997692_SNP [dm3] 2L_12997692_SNP [dm6]	C	T	3.520e^-4	0.804	INTRON CG12404
3L	8287463	3L_8287463_SNP [dm3] 3L_8294363_SNP [dm6]	C	A	3.536e^-4	0.804	INTRON CG7201
2L	3880439	2L_3880439_SNP [dm3] 2L_3880439_SNP [dm6]	A	G	3.538e^-4	0.804	UPSTREAM capu INTRON capu
X	21166964	X_21166964_SNP [dm3] X_21295937_SNP [dm6]	A	G	3.539e^-4	0.804	SYNONYMOUS_CODING CG1718 DOWNSTREAM mir-1007
3R	11859412	3R_11859412_SNP [dm3] 3R_16033690_SNP [dm6]	T	G	3.541e^-4	0.804	UPSTREAM pnr INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	12362153	X_12362153_SNP [dm3] X_12468120_SNP [dm6]	A	G	3.545e^-4	0.804	INTRON CG42258	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15877307	2R_15877307_SNP [dm3] 2R_19989802_SNP [dm6]	G	C	3.545e^-4	0.804	INTERGENIC
2R	14159971	2R_14159971_SNP [dm3] 2R_18272466_SNP [dm6]	A	G	3.547e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14525578	2R_14525578_SNP [dm3] 2R_18638073_SNP [dm6]	C	T	3.551e^-4	0.804	SYNONYMOUS_CODING CG30122	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
2R	14099425	2R_14099425_SNP [dm3] 2R_18211920_SNP [dm6]	C	G	3.561e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	4231072	X_4231072_SNP [dm3] X_4337039_SNP [dm6]	T	C	3.564e^-4	0.804	INTRON norpA
2R	17420847	2R_17420847_SNP [dm3] 2R_21533342_SNP [dm6]	T	C	3.565e^-4	0.804	INTRON Egfr
2L	10247822	2L_10247822_SNP [dm3] 2L_10247822_SNP [dm6]	A	G	3.569e^-4	0.804	UPSTREAM chico INTRON bsk
2R	20352951	2R_20352951_SNP [dm3] 2R_24465428_SNP [dm6]	C	G	3.578e^-4	0.804	INTRON CG13579	regulatory region REDfly_CRMs
3L	3582866	3L_3582866_SNP [dm3] 3L_3582866_SNP [dm6]	G	C	3.581e^-4	0.804	INTRON Eip63E	TF binding site mE1_TFBS_inv
3L	19632370	3L_19632370_SNP [dm3] 3L_19639270_SNP [dm6]	T	G	3.597e^-4	0.804	UTR_3_PRIME CG8786 DOWNSTREAM CG8786 INTRON CG8786
X	4236958	X_4236958_SNP [dm3] X_4342925_SNP [dm6]	C	T	3.603e^-4	0.804	INTRON norpA
2R	1366452	2R_1366452_SNP [dm3] 2R_5478947_SNP [dm6]	C	T	3.605e^-4	0.804	INTRON CG30440	transposable element FlyBase
2L	10855076	2L_10855076_SNP [dm3] 2L_10855076_SNP [dm6]	A	G	3.608e^-4	0.804	UTR_3_PRIME Dnz1 DOWNSTREAM CG43129	TF binding site mE1_TFBS_cad
3R	14523018	3R_14523018_SNP [dm3] 3R_18697296_SNP [dm6]	A	C	3.612e^-4	0.804	INTERGENIC
3R	23892534	3R_23892534_SNP [dm3] 3R_28066812_SNP [dm6]	C	G	3.613e^-4	0.804	INTRON CG34362
2L	4897394	2L_4897394_SNP [dm3] 2L_4897394_SNP [dm6]	T	C	3.614e^-4	0.804	INTRON CG3036	TF binding site mE1_TFBS_sens
2R	17452833	2R_17452833_SNP [dm3] 2R_21565328_SNP [dm6]	C	A	3.616e^-4	0.804	INTRON CG10440
3L	17096705	3L_17096705_SNP [dm3] 3L_17103605_SNP [dm6]	C	T	3.624e^-4	0.804	INTRON Rbp6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19591472	3L_19591472_SNP [dm3] 3L_19598372_SNP [dm6]	T	C	3.626e^-4	0.804	SPLICE_SITE_REGION ash1 UTR_5_PRIME ash1 UPSTREAM Taf6 INTRON ash1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	15736135	2L_15736135_SNP [dm3] 2L_15736135_SNP [dm6]	G	T	3.633e^-4	0.804	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17687316	3R_17687316_SNP [dm3] 3R_21861594_SNP [dm6]	T	C	3.633e^-4	0.804	UPSTREAM CR45644 EXON CR45645	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	18240209	2R_18240209_SNP [dm3] 2R_22352704_SNP [dm6]	G	A	3.635e^-4	0.804	INTRON Liprin-gamma
3L	1754077	3L_1754077_SNP [dm3] 3L_1754077_SNP [dm6]	G	A	3.641e^-4	0.804	SYNONYMOUS_CODING Cht2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	3291006	3L_3291006_SNP [dm3] 3L_3291006_SNP [dm6]	G	A	3.644e^-4	0.804	UPSTREAM CG12009 DOWNSTREAM CG12017 INTERGENIC
3L	11341758	3L_11341758_SNP [dm3] 3L_11348658_SNP [dm6]	T	A	3.646e^-4	0.804	DOWNSTREAM CR45251 INTERGENIC
3R	23893375	3R_23893375_SNP [dm3] 3R_28067653_SNP [dm6]	G	A	3.652e^-4	0.804	INTRON CG34362
3L	2362706	3L_2362706_SNP [dm3] 3L_2362706_SNP [dm6]	G	A	3.654e^-4	0.804	DOWNSTREAM CG13801 INTERGENIC
2R	1357076	2R_1357076_SNP [dm3] 2R_5469571_SNP [dm6]	T	C	3.666e^-4	0.804	INTRON CG30440	transposable element FlyBase
2L	10442221	2L_10442221_SNP [dm3] 2L_10442221_SNP [dm6]	G	C	3.670e^-4	0.804	UPSTREAM loh & 1 other INTERGENIC
3R	19782814	3R_19782814_SNP [dm3] 3R_23957092_SNP [dm6]	T	G	3.672e^-4	0.804	INTRON Aats-glupro	TF binding site mE1_TFBS_cad
3R	5213034	3R_5213034_INS [dm3] 3R_9387312_INS [dm6]	C	CAAACTAACTTAAAGTCTCG...	3.673e^-4	0.804	INTRON FER	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15413629	2L_15413629_SNP [dm3] 2L_15413629_SNP [dm6]	T	A	3.675e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8986874	2L_8986874_SNP [dm3] 2L_8986874_SNP [dm6]	G	A	3.680e^-4	0.804	INTRON rost
2R	10589456	2R_10589456_SNP [dm3] 2R_14701951_SNP [dm6]	A	C	3.680e^-4	0.804	INTRON mspo
X	21451749	X_21451749_SNP [dm3] X_21580722_SNP [dm6]	G	A	3.687e^-4	0.804	INTERGENIC
3R	8393975	3R_8393975_SNP [dm3] 3R_12568253_SNP [dm6]	A	G	3.690e^-4	0.804	INTRON Octbeta2R
2L	8131878	2L_8131878_SNP [dm3] 2L_8131878_SNP [dm6]	G	A	3.693e^-4	0.804	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9304144	3L_9304144_SNP [dm3] 3L_9311044_SNP [dm6]	A	C	3.695e^-4	0.804	INTERGENIC
2R	16531028	2R_16531028_SNP [dm3] 2R_20643523_SNP [dm6]	T	C	3.697e^-4	0.804	UPSTREAM DMAP1 DOWNSTREAM CG11110 INTRON CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	13674334	2R_13674334_SNP [dm3] 2R_17786829_SNP [dm6]	G	C	3.701e^-4	0.804	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
3R	20423055	3R_20423055_SNP [dm3] 3R_24597333_SNP [dm6]	C	T	3.703e^-4	0.804	INTRON mld	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4263691	2L_4263691_SNP [dm3] 2L_4263691_SNP [dm6]	T	C	3.704e^-4	0.804	INTERGENIC
2L	7110466	2L_7110466_SNP [dm3] 2L_7110466_SNP [dm6]	T	G	3.715e^-4	0.804	INTRON Pvf3
2R	11373431	2R_11373431_SNP [dm3] 2R_15485926_SNP [dm6]	C	G	3.721e^-4	0.804	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18548919	2R_18548919_DEL [dm3] 2R_22661414_DEL [dm6]	TTTCTGGGT	T	3.723e^-4	0.804	UPSTREAM CG42566 DOWNSTREAM CG42565 & 2 others INTERGENIC
2L	4830789	2L_4830789_SNP [dm3] 2L_4830789_SNP [dm6]	T	A	3.724e^-4	0.804	UPSTREAM mir-4912 & 1 other DOWNSTREAM Ir25a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	9707328	3R_9707328_SNP [dm3] 3R_13881606_SNP [dm6]	G	A	3.733e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11374635	3L_11374635_SNP [dm3] 3L_11381535_SNP [dm6]	G	A	3.736e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	14346861	3R_14346861_SNP [dm3] 3R_18521139_SNP [dm6]	G	C	3.739e^-4	0.804	INTRON fru
3L	9340816	3L_9340816_SNP [dm3] 3L_9347716_SNP [dm6]	G	A	3.740e^-4	0.804	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
X	16308663	X_16308663_SNP [dm3] X_16414630_SNP [dm6]	A	T	3.740e^-4	0.804	UTR_3_PRIME CG4301 UPSTREAM Traf-like DOWNSTREAM CG4301
3L	11101894	3L_11101894_SNP [dm3] 3L_11108794_SNP [dm6]	T	A	3.743e^-4	0.804	UPSTREAM CG7638 DOWNSTREAM CG34012 & 1 other INTERGENIC
3L	13325222	3L_13325222_SNP [dm3] 3L_13332122_SNP [dm6]	G	C	3.745e^-4	0.804	INTERGENIC
3L	18494985	3L_18494985_SNP [dm3] 3L_18501885_SNP [dm6]	G	A	3.754e^-4	0.804	INTRON AstC-R2
3L	6315318	3L_6315318_SNP [dm3] 3L_6322218_SNP [dm6]	T	G	3.756e^-4	0.804	DOWNSTREAM Or65a INTERGENIC
3R	22447129	3R_22447129_SNP [dm3] 3R_26621407_SNP [dm6]	A	G	3.760e^-4	0.804	UPSTREAM TwdlP INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1886264	3L_1886264_SNP [dm3] 3L_1886264_SNP [dm6]	A	G	3.761e^-4	0.804	INTRON Tmhs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8188991	2L_8188991_SNP [dm3] 2L_8188991_SNP [dm6]	A	G	3.780e^-4	0.804	SYNONYMOUS_CODING Piezo
2L	5404475	2L_5404475_SNP [dm3] 2L_5404475_SNP [dm6]	A	T	3.789e^-4	0.804	START_GAINED H15 UTR_5_PRIME H15 UPSTREAM H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	13295280	3L_13295280_SNP [dm3] 3L_13302180_SNP [dm6]	T	C	3.791e^-4	0.804	UPSTREAM CR43911 DOWNSTREAM CR44557 & 1 other INTERGENIC
3R	12250074	3R_12250074_SNP [dm3] 3R_16424352_SNP [dm6]	C	T	3.791e^-4	0.804	DOWNSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	15665885	X_15665885_SNP [dm3] X_15771852_SNP [dm6]	A	T	3.800e^-4	0.804	NON_SYNONYMOUS_CODING CG33172	TF binding site mE1_TFBS_sens
2R	16358805	2R_16358805_SNP [dm3] 2R_20471300_SNP [dm6]	A	G	3.804e^-4	0.804	DOWNSTREAM CG12484 INTRON CG12484
3L	11341765	3L_11341765_SNP [dm3] 3L_11348665_SNP [dm6]	A	T	3.804e^-4	0.804	DOWNSTREAM CR45251 INTERGENIC
3R	25604142	3R_25604142_SNP [dm3] 3R_29778420_SNP [dm6]	A	T	3.813e^-4	0.804	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
2R	4218122	2R_4218122_SNP [dm3] 2R_8330617_SNP [dm6]	C	T	3.818e^-4	0.804	INTRON pdm3
2L	12596755	2L_12596755_SNP [dm3] 2L_12596755_SNP [dm6]	T	G	3.818e^-4	0.804	INTRON nub
X	2402173	X_2402173_SNP [dm3] X_2508140_SNP [dm6]	A	G	3.820e^-4	0.804	INTRON trol
2R	18226223	2R_18226223_SNP [dm3] 2R_22338718_SNP [dm6]	C	T	3.823e^-4	0.804	INTRON Liprin-gamma
2L	2034981	2L_2034981_SNP [dm3] 2L_2034981_SNP [dm6]	C	T	3.831e^-4	0.804	SYNONYMOUS_CODING CG42296	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4360175	3L_4360175_SNP [dm3] 3L_4360175_SNP [dm6]	G	A	3.832e^-4	0.804	INTRON Cip4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7862147	2L_7862147_SNP [dm3] 2L_7862147_SNP [dm6]	C	T	3.833e^-4	0.804	INTERGENIC
2L	15058467	2L_15058467_SNP [dm3] 2L_15058467_SNP [dm6]	T	A	3.834e^-4	0.804	SYNONYMOUS_CODING CG33679 UPSTREAM ck DOWNSTREAM TfIIS	TF binding site BDTNP1_TFBS_dl
X	8895713	X_8895713_SNP [dm3] X_9001680_SNP [dm6]	G	A	3.835e^-4	0.804	SYNONYMOUS_CODING rdgA INTRON rdgA & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	26239749	3R_26239749_SNP [dm3] 3R_30414027_SNP [dm6]	C	T	3.840e^-4	0.804	INTERGENIC
3L	14052318	3L_14052318_SNP [dm3] 3L_14059218_SNP [dm6]	T	A	3.851e^-4	0.804	INTRON CG32138
2L	8245961	2L_8245961_SNP [dm3] 2L_8245961_SNP [dm6]	T	G	3.856e^-4	0.804	SYNONYMOUS_CODING CG8086 INTRON CG8086
3L	18123390	3L_18123390_SNP [dm3] 3L_18130290_SNP [dm6]	A	G	3.858e^-4	0.804	SYNONYMOUS_CODING Cyp312a1
2R	2040615	2R_2040615_SNP [dm3] 2R_6153110_SNP [dm6]	C	T	3.867e^-4	0.804	UPSTREAM tRNA:N5:42Ag & 1 other DOWNSTREAM tRNA:N5:42Af INTRON EcR
3L	5190501	3L_5190501_SNP [dm3] 3L_5197401_SNP [dm6]	A	T	3.872e^-4	0.804	INTRON shep
2R	14159980	2R_14159980_SNP [dm3] 2R_18272475_SNP [dm6]	C	G	3.876e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12544293	3L_12544293_SNP [dm3] 3L_12551193_SNP [dm6]	C	A	3.876e^-4	0.804	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	19387587	2R_19387587_SNP [dm3] 2R_23500064_SNP [dm6]	C	G	3.878e^-4	0.804	SYNONYMOUS_CODING CG13558	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	10968567	X_10968567_SNP [dm3] X_11074534_SNP [dm6]	G	T	3.879e^-4	0.804	NON_SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
2L	14267199	2L_14267199_SNP [dm3] 2L_14267199_SNP [dm6]	A	C	3.881e^-4	0.804	INTRON wb
X	9408984	X_9408984_SNP [dm3] X_9514951_SNP [dm6]	A	G	3.884e^-4	0.804	INTRON CG32700
2L	5847142	2L_5847142_SNP [dm3] 2L_5847142_SNP [dm6]	T	C	3.886e^-4	0.804	INTRON TrissinR
2L	10519441	2L_10519441_SNP [dm3] 2L_10519441_SNP [dm6]	A	T	3.896e^-4	0.804	DOWNSTREAM Lrr47 INTERGENIC
3R	27217036	3R_27217036_DEL [dm3] 3R_31391314_DEL [dm6]	TGATT	T	3.897e^-4	0.804	UTR_3_PRIME CG1607 DOWNSTREAM CG31204
3L	11412167	3L_11412167_SNP [dm3] 3L_11419067_SNP [dm6]	T	C	3.898e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8526906	3R_8526906_SNP [dm3] 3R_12701184_SNP [dm6]	C	T	3.911e^-4	0.804	INTRON Past1
2L	9640210	2L_9640210_SNP [dm3] 2L_9640210_SNP [dm6]	C	A	3.916e^-4	0.804	INTRON Apoltp
2R	7268875	2R_7268875_SNP [dm3] 2R_11381370_SNP [dm6]	A	G	3.921e^-4	0.804	UTR_3_PRIME Sod3 INTRON Sod3
2L	5479413	2L_5479413_INS [dm3] 2L_5479413_INS [dm6]	A	AGTCCTATAA	3.922e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15315838	2R_15315838_SNP [dm3] 2R_19428333_SNP [dm6]	A	C	3.922e^-4	0.804	SYNONYMOUS_CODING CalpA
2R	12030896	2R_12030896_SNP [dm3] 2R_16143391_SNP [dm6]	T	C	3.925e^-4	0.804	SYNONYMOUS_CODING Aats-cys DOWNSTREAM CG30094	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	1083785	2R_1083785_SNP [dm3] 2R_5196280_SNP [dm6]	G	C	3.928e^-4	0.804	NON_SYNONYMOUS_CODING Nipped-A	TF binding site mE1_TFBS_inv
2L	4984877	2L_4984877_SNP [dm3] 2L_4984877_SNP [dm6]	T	C	3.942e^-4	0.804	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_chinmo
3L	19227205	3L_19227205_SNP [dm3] 3L_19234105_SNP [dm6]	C	G	3.948e^-4	0.804	INTRON fz2
2L	18114802	2L_18114802_SNP [dm3] 2L_18114802_SNP [dm6]	T	C	3.952e^-4	0.804	SYNONYMOUS_CODING CG15152
3R	25160737	3R_25160737_SNP [dm3] 3R_29335015_SNP [dm6]	A	C	3.962e^-4	0.804	INTERGENIC
2R	14158762	2R_14158762_SNP [dm3] 2R_18271257_SNP [dm6]	T	C	3.965e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1670261	3L_1670261_SNP [dm3] 3L_1670261_SNP [dm6]	G	T	3.973e^-4	0.804	UPSTREAM RabX5 DOWNSTREAM CG13930 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19108123	2R_19108123_SNP [dm3] 2R_23220600_SNP [dm6]	A	G	3.978e^-4	0.804	INTERGENIC
3R	13937696	3R_13937696_SNP [dm3] 3R_18111974_SNP [dm6]	A	G	3.982e^-4	0.804	INTRON sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19630147	3L_19630147_DEL [dm3] 3L_19637047_DEL [dm6]	TT	T	3.982e^-4	0.804	DOWNSTREAM CG8786 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	5404606	2L_5404606_SNP [dm3] 2L_5404606_SNP [dm6]	G	A	3.988e^-4	0.804	UTR_5_PRIME H15 UPSTREAM H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
X	20981970	X_20981970_SNP [dm3] X_21110943_SNP [dm6]	C	T	3.991e^-4	0.804	SYNONYMOUS_CODING CG11566 UTR_3_PRIME stg1 DOWNSTREAM unc	TF binding site mE1_TFBS_chinmo
2R	8129473	2R_8129473_SNP [dm3] 2R_12241968_SNP [dm6]	T	A	3.993e^-4	0.804	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	19358330	2R_19358330_SNP [dm3] 2R_23470807_SNP [dm6]	G	A	3.993e^-4	0.804	SYNONYMOUS_CODING Or59b INTRON CG43795
2R	9795739	2R_9795739_SNP [dm3] 2R_13908234_SNP [dm6]	G	A	3.999e^-4	0.804	START_GAINED shot UTR_5_PRIME shot INTRON shot	TF binding site mE1_TFBS_cad
3R	7716437	3R_7716437_SNP [dm3] 3R_11890715_SNP [dm6]	C	A	4.001e^-4	0.804	NON_SYNONYMOUS_CODING CG31368
X	21457297	X_21457297_SNP [dm3] X_21586270_SNP [dm6]	T	C	4.001e^-4	0.804	INTERGENIC
2L	5479410	2L_5479410_INS [dm3] 2L_5479410_INS [dm6]	T	TTCC	4.002e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_cad
X	21283710	X_21283710_INS [dm3] X_21412683_INS [dm6]	G	GTAACCATGG	4.003e^-4	0.804	INTERGENIC
2L	14252558	2L_14252558_SNP [dm3] 2L_14252558_SNP [dm6]	A	T	4.006e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	6501191	3R_6501191_SNP [dm3] 3R_10675469_SNP [dm6]	A	T	4.010e^-4	0.804	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	9808463	2R_9808463_SNP [dm3] 2R_13920958_SNP [dm6]	A	G	4.017e^-4	0.804	INTRON shot
3R	25261177	3R_25261177_SNP [dm3] 3R_29435455_SNP [dm6]	A	C	4.018e^-4	0.804	INTRON Ptp99A
2R	3384717	2R_3384717_SNP [dm3] 2R_7497212_SNP [dm6]	A	C	4.018e^-4	0.804	SYNONYMOUS_CODING dpa UPSTREAM CG1620	TF binding site mE1_TFBS_cad
3L	2649538	3L_2649538_SNP [dm3] 3L_2649538_SNP [dm6]	A	G	4.025e^-4	0.804	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2R	13335960	2R_13335960_SNP [dm3] 2R_17448455_SNP [dm6]	T	A	4.026e^-4	0.804	UPSTREAM mthl4 DOWNSTREAM mthl3 INTERGENIC
3L	12930561	3L_12930561_SNP [dm3] 3L_12937461_SNP [dm6]	T	C	4.036e^-4	0.804	INTERGENIC
3L	10845119	3L_10845119_SNP [dm3] 3L_10852019_SNP [dm6]	T	G	4.037e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10520255	2L_10520255_SNP [dm3] 2L_10520255_SNP [dm6]	A	C	4.041e^-4	0.804	DOWNSTREAM Lrr47 INTERGENIC
3R	22106227	3R_22106227_SNP [dm3] 3R_26280505_SNP [dm6]	T	C	4.050e^-4	0.804	INTERGENIC
3R	8437753	3R_8437753_SNP [dm3] 3R_12612031_SNP [dm6]	C	T	4.052e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	25262286	3R_25262286_SNP [dm3] 3R_29436564_SNP [dm6]	C	T	4.053e^-4	0.804	INTRON Ptp99A
2L	5848574	2L_5848574_SNP [dm3] 2L_5848574_SNP [dm6]	G	A	4.056e^-4	0.804	INTRON TrissinR
2R	13780840	2R_13780840_SNP [dm3] 2R_17893335_SNP [dm6]	A	G	4.060e^-4	0.804	DOWNSTREAM CG14492 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	6888627	3L_6888627_SNP [dm3] 3L_6895527_SNP [dm6]	G	T	4.064e^-4	0.804	INTERGENIC
2R	19358258	2R_19358258_SNP [dm3] 2R_23470735_SNP [dm6]	G	T	4.064e^-4	0.804	SYNONYMOUS_CODING Or59b INTRON CG43795
2R	19709451	2R_19709451_SNP [dm3] 2R_23821928_SNP [dm6]	G	A	4.068e^-4	0.804	INTRON CG5549	TF binding site mE1_TFBS_chinmo
3R	18452057	3R_18452057_SNP [dm3] 3R_22626335_SNP [dm6]	T	G	4.077e^-4	0.804	UTR_5_PRIME loco INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9471752	2R_9471752_SNP [dm3] 2R_13584247_SNP [dm6]	T	C	4.081e^-4	0.804	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	10442227	2L_10442227_SNP [dm3] 2L_10442227_SNP [dm6]	C	T	4.085e^-4	0.804	UPSTREAM loh & 1 other INTERGENIC
2L	9102397	2L_9102397_SNP [dm3] 2L_9102397_SNP [dm6]	C	T	4.094e^-4	0.804	INTERGENIC
3R	22458075	3R_22458075_SNP [dm3] 3R_26632353_SNP [dm6]	T	C	4.133e^-4	0.804	SYNONYMOUS_CODING TwdlN	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17293073	2R_17293073_SNP [dm3] 2R_21405568_SNP [dm6]	T	A	4.135e^-4	0.804	INTRON Sdc
3L	16338592	3L_16338592_SNP [dm3] 3L_16345492_SNP [dm6]	C	T	4.142e^-4	0.804	UPSTREAM CG33257 DOWNSTREAM CG4998 INTERGENIC
2R	19001681	2R_19001681_SNP [dm3] 2R_23114158_SNP [dm6]	T	G	4.145e^-4	0.804	INTRON CR44782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6761018	3L_6761018_SNP [dm3] 3L_6767918_SNP [dm6]	G	A	4.147e^-4	0.804	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16828872	2R_16828872_SNP [dm3] 2R_20941367_SNP [dm6]	G	A	4.150e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2261646	3L_2261646_SNP [dm3] 3L_2261646_SNP [dm6]	A	C	4.157e^-4	0.804	INTRON oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9340916	3L_9340916_SNP [dm3] 3L_9347816_SNP [dm6]	C	T	4.161e^-4	0.804	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
3L	9443607	3L_9443607_SNP [dm3] 3L_9450507_SNP [dm6]	G	A	4.165e^-4	0.804	UTR_3_PRIME CG3529 DOWNSTREAM CG3448
3R	11578441	3R_11578441_SNP [dm3] 3R_15752719_SNP [dm6]	C	T	4.168e^-4	0.804	INTERGENIC
X	16379807	X_16379807_SNP [dm3] X_16485774_SNP [dm6]	A	G	4.176e^-4	0.804	INTRON para
2R	8412629	2R_8412629_SNP [dm3] 2R_12525124_SNP [dm6]	T	C	4.179e^-4	0.804	INTERGENIC
3R	11793544	3R_11793544_SNP [dm3] 3R_15967822_SNP [dm6]	A	G	4.180e^-4	0.804	SYNONYMOUS_CODING Rbf2 DOWNSTREAM mor
3R	11652578	3R_11652578_SNP [dm3] 3R_15826856_SNP [dm6]	G	A	4.188e^-4	0.804	INTRON rec & 1 other
3L	11412235	3L_11412235_DEL [dm3] 3L_11419135_DEL [dm6]	TGGTCTTGT	T	4.189e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11412251	3L_11412251_INS [dm3] 3L_11419151_INS [dm6]	T	ATAGAATAGATTC...	4.189e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19243095	3R_19243095_SNP [dm3] 3R_23417373_SNP [dm6]	G	A	4.189e^-4	0.804	INTRON CG4374	TF binding site mE1_TFBS_chinmo
X	10968616	X_10968616_SNP [dm3] X_11074583_SNP [dm6]	G	A	4.196e^-4	0.804	SYNONYMOUS_CODING sev	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27142486	3R_27142486_SNP [dm3] 3R_31316764_SNP [dm6]	A	G	4.198e^-4	0.804	INTRON CG34347
X	21171502	X_21171502_INS [dm3] X_21300475_INS [dm6]	T	TC	4.199e^-4	0.804	INTRON CG1718
X	10062700	X_10062700_SNP [dm3] X_10168667_SNP [dm6]	T	A	4.208e^-4	0.804	INTRON CR44894 & 1 other
3L	13298804	3L_13298804_SNP [dm3] 3L_13305704_SNP [dm6]	A	T	4.209e^-4	0.804	INTERGENIC
2L	5558708	2L_5558708_SNP [dm3] 2L_5558708_SNP [dm6]	T	A	4.210e^-4	0.804	UTR_3_PRIME GluRIIA UPSTREAM GluRIIB
3R	17293564	3R_17293564_SNP [dm3] 3R_21467842_SNP [dm6]	C	A	4.214e^-4	0.804	INTERGENIC
3R	17293574	3R_17293574_SNP [dm3] 3R_21467852_SNP [dm6]	A	G	4.214e^-4	0.804	INTERGENIC
3R	17293596	3R_17293596_SNP [dm3] 3R_21467874_SNP [dm6]	T	A	4.214e^-4	0.804	INTERGENIC
2R	6859705	2R_6859705_SNP [dm3] 2R_10972200_SNP [dm6]	C	T	4.215e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5652592	2L_5652592_SNP [dm3] 2L_5652592_SNP [dm6]	C	T	4.216e^-4	0.804	INTRON CG31646
2R	15877774	2R_15877774_SNP [dm3] 2R_19990269_SNP [dm6]	A	T	4.216e^-4	0.804	INTERGENIC
3R	27237951	3R_27237951_SNP [dm3] 3R_31412229_SNP [dm6]	C	T	4.224e^-4	0.804	INTRON Gprk2	TF binding site mE1_TFBS_cad
3R	14836736	3R_14836736_DEL [dm3] 3R_19011014_DEL [dm6]	GGTG	G	4.225e^-4	0.804	INTRON gukh
3L	14647445	3L_14647445_SNP [dm3] 3L_14654345_SNP [dm6]	C	T	4.225e^-4	0.804	INTRON dlp
X	6679267	X_6679267_SNP [dm3] X_6785234_SNP [dm6]	T	A	4.234e^-4	0.804	INTRON C3G	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	18326057	2L_18326057_DEL [dm3] 2L_18326057_DEL [dm6]	TATGCCT	T	4.237e^-4	0.804	INTRON Fas3
3L	570664	3L_570664_SNP [dm3] 3L_570664_SNP [dm6]	A	G	4.238e^-4	0.804	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16225053	3R_16225053_SNP [dm3] 3R_20399331_SNP [dm6]	T	A	4.244e^-4	0.804	DOWNSTREAM Gfrl INTRON Gfrl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4154249	3L_4154249_SNP [dm3] 3L_4154249_SNP [dm6]	A	G	4.245e^-4	0.804	SPLICE_SITE_REGION nab INTRON nab
2L	7100657	2L_7100657_SNP [dm3] 2L_7100657_SNP [dm6]	G	T	4.245e^-4	0.804	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	7583366	2L_7583366_SNP [dm3] 2L_7583366_SNP [dm6]	G	T	4.247e^-4	0.804	DOWNSTREAM Spn28B INTERGENIC
X	19459923	X_19459923_SNP [dm3] X_19565890_SNP [dm6]	A	G	4.254e^-4	0.804	UPSTREAM car & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12935498	3L_12935498_SNP [dm3] 3L_12942398_SNP [dm6]	C	A	4.261e^-4	0.804	INTERGENIC
3R	20538624	3R_20538624_SNP [dm3] 3R_24712902_SNP [dm6]	T	C	4.267e^-4	0.804	START_GAINED CG13627 UTR_5_PRIME CG13627
2L	16816259	2L_16816259_SNP [dm3] 2L_16816259_SNP [dm6]	G	A	4.268e^-4	0.804	UPSTREAM mdy DOWNSTREAM CG13272 INTRON CG13280	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	26450314	3R_26450314_SNP [dm3] 3R_30624592_SNP [dm6]	A	T	4.269e^-4	0.804	DOWNSTREAM CR44136 INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	23870211	3R_23870211_SNP [dm3] 3R_28044489_SNP [dm6]	A	G	4.271e^-4	0.804	INTRON CG34362
3L	7275845	3L_7275845_SNP [dm3] 3L_7282745_SNP [dm6]	A	C	4.296e^-4	0.804	INTRON unc-13-4A
2L	12997715	2L_12997715_SNP [dm3] 2L_12997715_SNP [dm6]	A	C	4.306e^-4	0.804	INTRON CG12404
3R	26962041	3R_26962041_SNP [dm3] 3R_31136319_SNP [dm6]	A	C	4.310e^-4	0.804	INTRON Gycbeta100B
3R	16872971	3R_16872971_SNP [dm3] 3R_21047249_SNP [dm6]	A	C	4.311e^-4	0.804	UPSTREAM CG31207 DOWNSTREAM CG7079 INTERGENIC
X	11128618	X_11128618_SNP [dm3] X_11234585_SNP [dm6]	C	T	4.314e^-4	0.804	INTRON CG44422
X	21498935	X_21498935_SNP [dm3] X_21627908_SNP [dm6]	G	A	4.314e^-4	0.804	INTRON DIP1	transposable element FlyBase
3L	10359905	3L_10359905_SNP [dm3] 3L_10366805_SNP [dm6]	C	T	4.316e^-4	0.804	EXON CR44327
3R	18298770	3R_18298770_SNP [dm3] 3R_22473048_SNP [dm6]	G	A	4.323e^-4	0.804	INTRON Nrx-1	TF binding site mE1_TFBS_chinmo
2R	13781783	2R_13781783_SNP [dm3] 2R_17894278_SNP [dm6]	C	G	4.328e^-4	0.804	NON_SYNONYMOUS_CODING CG14492 UPSTREAM CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5143866	3L_5143866_SNP [dm3] 3L_5150766_SNP [dm6]	G	A	4.331e^-4	0.804	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23933284	3R_23933284_SNP [dm3] 3R_28107562_SNP [dm6]	T	A	4.332e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_eve
X	13674836	X_13674836_SNP [dm3] X_13780803_SNP [dm6]	T	A	4.334e^-4	0.804	INTRON CtsB1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	12997689	2L_12997689_SNP [dm3] 2L_12997689_SNP [dm6]	T	A	4.334e^-4	0.804	INTRON CG12404
3R	9699259	3R_9699259_INS [dm3] 3R_13873537_INS [dm6]	G	GTTG	4.340e^-4	0.804	CODON_INSERTION E5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11103180	3L_11103180_SNP [dm3] 3L_11110080_SNP [dm6]	C	T	4.344e^-4	0.804	SYNONYMOUS_CODING CG7638 UPSTREAM CG34012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10912479	3L_10912479_INS [dm3] 3L_10919379_INS [dm6]	C	CATTCTCCACC...	4.345e^-4	0.804	INTERGENIC
2R	10556497	2R_10556497_SNP [dm3] 2R_14668992_SNP [dm6]	A	G	4.354e^-4	0.804	NON_SYNONYMOUS_CODING CG12866
3L	16813496	3L_16813496_SNP [dm3] 3L_16820396_SNP [dm6]	C	A	4.362e^-4	0.804	DOWNSTREAM nudC INTRON CG13024
X	15095143	X_15095143_SNP [dm3] X_15201110_SNP [dm6]	T	G	4.363e^-4	0.804	INTERGENIC
3L	10319532	3L_10319532_SNP [dm3] 3L_10326432_SNP [dm6]	G	A	4.371e^-4	0.804	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
2L	7885351	2L_7885351_SNP [dm3] 2L_7885351_SNP [dm6]	G	T	4.372e^-4	0.804	UTR_5_PRIME SmE UPSTREAM CG34132 INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7885371	2L_7885371_SNP [dm3] 2L_7885371_SNP [dm6]	G	A	4.372e^-4	0.804	UTR_5_PRIME SmE UPSTREAM CG34132 INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7885387	2L_7885387_SNP [dm3] 2L_7885387_SNP [dm6]	C	T	4.372e^-4	0.804	UTR_5_PRIME SmE UPSTREAM CG34132 INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	15533435	2L_15533435_SNP [dm3] 2L_15533435_SNP [dm6]	C	A	4.374e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23824502	3R_23824502_DEL [dm3] 3R_27998780_DEL [dm6]	TAACACAGGGGCGT...	T	4.375e^-4	0.804	INTERGENIC
2L	6708857	2L_6708857_SNP [dm3] 2L_6708857_SNP [dm6]	A	G	4.380e^-4	0.804	UTR_5_PRIME Tsp UPSTREAM Tsp INTRON Tsp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20266207	3R_20266207_SNP [dm3] 3R_24440485_SNP [dm6]	C	G	4.382e^-4	0.804	DOWNSTREAM CR43455 INTRON nAChRalpha1
X	20146226	X_20146226_SNP [dm3] X_20275200_SNP [dm6]	C	T	4.385e^-4	0.804	INTERGENIC

By genomic position
Variant impact
Gene name

lsm_Week5_Fecundity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results