DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.163e^-16)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2211 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	16036130	3L_16036130_SNP [dm3] 3L_16043030_SNP [dm6]	C	T	1.752e^-6	0.807	UTR_5_PRIME th UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv
3L	19590381	3L_19590381_SNP [dm3] 3L_19597281_SNP [dm6]	T	A	1.895e^-6	0.807	SYNONYMOUS_CODING ash1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5997712	3L_5997712_SNP [dm3] 3L_6004612_SNP [dm6]	C	T	2.286e^-6	0.807	INTRON PVRAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19649763	3R_19649763_INS [dm3] 3R_23824041_INS [dm6]	T	TGT	2.408e^-6	0.807	INTRON CG34355
3R	23964494	3R_23964494_SNP [dm3] 3R_28138772_SNP [dm6]	G	T	2.915e^-6	0.807	INTERGENIC
3L	8636367	3L_8636367_SNP [dm3] 3L_8643267_SNP [dm6]	G	A	3.723e^-6	0.807	SYNONYMOUS_CODING Cpr66D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9340954	3L_9340954_SNP [dm3] 3L_9347854_SNP [dm6]	T	C	4.089e^-6	0.807	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
3L	9746615	3L_9746615_SNP [dm3] 3L_9753515_SNP [dm6]	A	G	4.214e^-6	0.807	INTRON CG42268
2R	2718726	2R_2718726_SNP [dm3] 2R_6831221_SNP [dm6]	C	T	4.910e^-6	0.807	DOWNSTREAM CG34215 INTRON CG15236
3R	27135735	3R_27135735_SNP [dm3] 3R_31310013_SNP [dm6]	A	C	5.174e^-6	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9340927	3L_9340927_SNP [dm3] 3L_9347827_SNP [dm6]	C	T	5.182e^-6	0.807	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
X	18011757	X_18011757_INS [dm3] X_18117724_INS [dm6]	T	TT	5.622e^-6	0.807	UPSTREAM wupA INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16744235	2R_16744235_SNP [dm3] 2R_20856730_SNP [dm6]	G	T	5.791e^-6	0.807	INTERGENIC
3R	11652848	3R_11652848_SNP [dm3] 3R_15827126_SNP [dm6]	T	G	6.227e^-6	0.807	SYNONYMOUS_CODING CG4576 INTRON rec
2L	5974062	2L_5974062_SNP [dm3] 2L_5974062_SNP [dm6]	A	T	7.194e^-6	0.807	INTRON chic
3R	19216311	3R_19216311_SNP [dm3] 3R_23390589_SNP [dm6]	G	T	7.215e^-6	0.807	DOWNSTREAM CR43387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9950539	2L_9950539_SNP [dm3] 2L_9950539_SNP [dm6]	G	C	7.376e^-6	0.807	UPSTREAM mir-87 INTERGENIC
3L	9746792	3L_9746792_SNP [dm3] 3L_9753692_SNP [dm6]	C	T	8.987e^-6	0.807	INTRON CG42268
2R	16531028	2R_16531028_SNP [dm3] 2R_20643523_SNP [dm6]	T	C	9.183e^-6	0.807	UPSTREAM DMAP1 DOWNSTREAM CG11110 INTRON CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	1078372	2R_1078372_SNP [dm3] 2R_5190867_SNP [dm6]	C	A	9.308e^-6	0.807	INTRON Nipped-A	transposable element FlyBase
2L	14830196	2L_14830196_SNP [dm3] 2L_14830196_SNP [dm6]	T	C	9.440e^-6	0.807	INTERGENIC
2R	5401020	2R_5401020_SNP [dm3] 2R_9513515_SNP [dm6]	A	G	1.043e^-5	0.807	INTRON brp
3R	27135758	3R_27135758_INS [dm3] 3R_31310036_INS [dm6]	A	ACTGCTGCG	1.095e^-5	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10413521	3L_10413521_SNP [dm3] 3L_10420421_SNP [dm6]	A	T	1.140e^-5	0.807	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9340957	3L_9340957_SNP [dm3] 3L_9347857_SNP [dm6]	T	C	1.171e^-5	0.807	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
2L	9209653	2L_9209653_SNP [dm3] 2L_9209653_SNP [dm6]	C	G	1.257e^-5	0.807	INTRON tai
3R	23964492	3R_23964492_SNP [dm3] 3R_28138770_SNP [dm6]	T	A	1.369e^-5	0.807	INTERGENIC
3R	23926119	3R_23926119_SNP [dm3] 3R_28100397_SNP [dm6]	C	A	1.393e^-5	0.807	INTERGENIC
2R	14808373	2R_14808373_SNP [dm3] 2R_18920868_SNP [dm6]	C	T	1.427e^-5	0.807	INTRON sano
2R	5943150	2R_5943150_SNP [dm3] 2R_10055645_SNP [dm6]	A	T	1.460e^-5	0.807	INTRON magu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	24836863	3R_24836863_SNP [dm3] 3R_29011141_SNP [dm6]	C	T	1.487e^-5	0.807	INTRON wat
2L	14830212	2L_14830212_SNP [dm3] 2L_14830212_SNP [dm6]	C	T	1.503e^-5	0.807	INTERGENIC
2L	14830203	2L_14830203_SNP [dm3] 2L_14830203_SNP [dm6]	T	C	1.629e^-5	0.807	INTERGENIC
2L	16778469	2L_16778469_SNP [dm3] 2L_16778469_SNP [dm6]	G	T	1.650e^-5	0.807	NON_SYNONYMOUS_CODING Mhc INTRON Mhc
3L	9341302	3L_9341302_SNP [dm3] 3L_9348202_SNP [dm6]	T	G	1.701e^-5	0.807	UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
2R	16744236	2R_16744236_DEL [dm3] 2R_20856731_DEL [dm6]	GG	G	1.742e^-5	0.807	INTERGENIC
3L	10357987	3L_10357987_SNP [dm3] 3L_10364887_SNP [dm6]	A	T	1.744e^-5	0.807	UPSTREAM mir-276a EXON CR44327
3L	10432767	3L_10432767_INS [dm3] 3L_10439667_INS [dm6]	A	AA	1.866e^-5	0.807	INTERGENIC
2L	14830210	2L_14830210_SNP [dm3] 2L_14830210_SNP [dm6]	T	A	1.909e^-5	0.807	INTERGENIC
2R	15027922	2R_15027922_SNP [dm3] 2R_19140417_SNP [dm6]	C	T	1.931e^-5	0.807	SYNONYMOUS_CODING CG15111	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14752901	2R_14752901_SNP [dm3] 2R_18865396_SNP [dm6]	C	G	1.994e^-5	0.807	UPSTREAM Dpt & 1 other DOWNSTREAM CG43070 INTERGENIC
2L	10868856	2L_10868856_SNP [dm3] 2L_10868856_SNP [dm6]	C	G	2.019e^-5	0.807	INTERGENIC
2L	7578722	2L_7578722_SNP [dm3] 2L_7578722_SNP [dm6]	A	C	2.080e^-5	0.807	UTR_5_PRIME RapGAP1
3L	9697223	3L_9697223_INS [dm3] 3L_9704123_INS [dm6]	C	TTTATA	2.082e^-5	0.807	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19649746	3R_19649746_SNP [dm3] 3R_23824024_SNP [dm6]	T	C	2.211e^-5	0.807	INTRON CG34355
3L	11104967	3L_11104967_SNP [dm3] 3L_11111867_SNP [dm6]	T	C	2.226e^-5	0.807	UTR_3_PRIME CG7638 DOWNSTREAM Sod
2L	14830187	2L_14830187_SNP [dm3] 2L_14830187_SNP [dm6]	T	G	2.301e^-5	0.807	INTERGENIC
2L	5849263	2L_5849263_SNP [dm3] 2L_5849263_SNP [dm6]	A	C	2.352e^-5	0.807	INTRON TrissinR
3L	9545597	3L_9545597_SNP [dm3] 3L_9552497_SNP [dm6]	C	A	2.439e^-5	0.807	INTRON CG42673
3R	14345445	3R_14345445_SNP [dm3] 3R_18519723_SNP [dm6]	T	A	2.565e^-5	0.807	INTRON fru
2R	2718605	2R_2718605_SNP [dm3] 2R_6831100_SNP [dm6]	T	G	2.628e^-5	0.807	DOWNSTREAM CG34215 INTRON CG15236
2R	18087115	2R_18087115_SNP [dm3] 2R_22199610_SNP [dm6]	A	C	2.670e^-5	0.807	INTRON Swim
3R	25290840	3R_25290840_SNP [dm3] 3R_29465118_SNP [dm6]	C	G	2.771e^-5	0.807	INTRON Ptp99A
2L	5973720	2L_5973720_SNP [dm3] 2L_5973720_SNP [dm6]	A	G	2.807e^-5	0.807	INTRON chic
2R	1358575	2R_1358575_SNP [dm3] 2R_5471070_SNP [dm6]	G	A	2.884e^-5	0.807	INTRON CG30440	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	9079049	2L_9079049_SNP [dm3] 2L_9079049_SNP [dm6]	G	C	2.965e^-5	0.807	INTERGENIC
2R	18984195	2R_18984195_SNP [dm3] 2R_23096672_SNP [dm6]	A	G	3.004e^-5	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	17929804	2R_17929804_SNP [dm3] 2R_22042299_SNP [dm6]	A	G	3.044e^-5	0.807	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna
2L	7366950	2L_7366950_SNP [dm3] 2L_7366950_SNP [dm6]	T	G	3.073e^-5	0.807	INTRON Wnt10
2R	1078285	2R_1078285_SNP [dm3] 2R_5190780_SNP [dm6]	A	G	3.124e^-5	0.807	INTRON Nipped-A	transposable element FlyBase
2R	1373724	2R_1373724_SNP [dm3] 2R_5486219_SNP [dm6]	G	C	3.140e^-5	0.807	INTRON CG30440	transposable element FlyBase
3L	11745867	3L_11745867_SNP [dm3] 3L_11752767_SNP [dm6]	G	T	3.167e^-5	0.807	DOWNSTREAM Gr68a INTRON CG6024
2L	14830188	2L_14830188_SNP [dm3] 2L_14830188_SNP [dm6]	C	A	3.274e^-5	0.807	INTERGENIC
3L	11102343	3L_11102343_SNP [dm3] 3L_11109243_SNP [dm6]	G	A	3.303e^-5	0.807	SYNONYMOUS_CODING CG34012 UPSTREAM CG7638 DOWNSTREAM CG12522
2R	17433764	2R_17433764_SNP [dm3] 2R_21546259_SNP [dm6]	G	A	3.380e^-5	0.807	UPSTREAM Egfr INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Trl
3R	14345446	3R_14345446_SNP [dm3] 3R_18519724_SNP [dm6]	T	G	3.384e^-5	0.807	INTRON fru
3L	10853842	3L_10853842_SNP [dm3] 3L_10860742_SNP [dm6]	A	T	3.419e^-5	0.807	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	9507797	X_9507797_SNP [dm3] X_9613764_SNP [dm6]	G	T	3.439e^-5	0.807	INTRON CG42797
3R	24836860	3R_24836860_SNP [dm3] 3R_29011138_SNP [dm6]	C	G	3.472e^-5	0.807	INTRON wat
2R	5943130	2R_5943130_DEL [dm3] 2R_10055625_DEL [dm6]	TA	T	3.486e^-5	0.807	INTRON magu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	16778306	2L_16778306_SNP [dm3] 2L_16778306_SNP [dm6]	T	G	3.504e^-5	0.807	INTRON Mhc
2L	5848806	2L_5848806_SNP [dm3] 2L_5848806_SNP [dm6]	G	T	3.538e^-5	0.807	INTRON TrissinR
2R	14752706	2R_14752706_SNP [dm3] 2R_18865201_SNP [dm6]	G	C	3.579e^-5	0.807	UTR_5_PRIME CG43071 UPSTREAM Dpt DOWNSTREAM CG43070
2L	19129622	2L_19129622_SNP [dm3] 2L_19129622_SNP [dm6]	T	A	3.592e^-5	0.807	UTR_3_PRIME Aats-asn DOWNSTREAM Aats-asn & 1 other	TF binding site mE1_TFBS_cad
2R	14098872	2R_14098872_SNP [dm3] 2R_18211367_SNP [dm6]	G	A	3.608e^-5	0.807	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16778314	2L_16778314_SNP [dm3] 2L_16778314_SNP [dm6]	T	C	3.639e^-5	0.807	INTRON Mhc
3R	26746203	3R_26746203_SNP [dm3] 3R_30920481_SNP [dm6]	T	C	3.658e^-5	0.807	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	8982738	2L_8982738_INS [dm3] 2L_8982738_INS [dm6]	T	TT	3.713e^-5	0.807	INTRON CG13101
2L	4984901	2L_4984901_SNP [dm3] 2L_4984901_SNP [dm6]	C	T	3.750e^-5	0.807	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_chinmo
X	18017185	X_18017185_SNP [dm3] X_18123152_SNP [dm6]	A	G	3.791e^-5	0.807	DOWNSTREAM CR45606 INTERGENIC
2R	12604439	2R_12604439_SNP [dm3] 2R_16716934_SNP [dm6]	A	C	3.802e^-5	0.807	INTRON CG30463
2L	15534002	2L_15534002_SNP [dm3] 2L_15534002_SNP [dm6]	C	T	3.824e^-5	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19573384	2R_19573384_SNP [dm3] 2R_23685861_SNP [dm6]	T	A	3.920e^-5	0.807	UPSTREAM l_2_efl INTRON St3
3R	19649740	3R_19649740_SNP [dm3] 3R_23824018_SNP [dm6]	T	G	3.966e^-5	0.807	INTRON CG34355
2L	1239293	2L_1239293_SNP [dm3] 2L_1239293_SNP [dm6]	T	G	4.000e^-5	0.807	UPSTREAM CG5397 INTERGENIC
3R	24836848	3R_24836848_SNP [dm3] 3R_29011126_SNP [dm6]	G	A	4.057e^-5	0.807	INTRON wat
2R	1358734	2R_1358734_SNP [dm3] 2R_5471229_SNP [dm6]	G	C	4.070e^-5	0.807	INTRON CG30440	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2R	1325455	2R_1325455_SNP [dm3] 2R_5437950_SNP [dm6]	T	A	4.114e^-5	0.807	INTRON laccase2
X	4615350	X_4615350_SNP [dm3] X_4721317_SNP [dm6]	C	T	4.207e^-5	0.807	INTRON Proc-R
2R	17260722	2R_17260722_SNP [dm3] 2R_21373217_SNP [dm6]	T	C	4.319e^-5	0.807	INTRON cv-2	TF binding site BDTNP1_TFBS_twi
2R	15838613	2R_15838613_SNP [dm3] 2R_19951108_SNP [dm6]	G	A	4.643e^-5	0.807	UPSTREAM CG10822 INTERGENIC
X	6952669	X_6952669_DEL [dm3] X_7058636_DEL [dm6]	TGACCTATGGGCATACA...	T	4.650e^-5	0.807	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	4935239	3R_4935239_SNP [dm3] 3R_9109517_SNP [dm6]	A	G	4.663e^-5	0.807	INTRON pum
2L	5652592	2L_5652592_SNP [dm3] 2L_5652592_SNP [dm6]	C	T	4.673e^-5	0.807	INTRON CG31646
2R	19709451	2R_19709451_SNP [dm3] 2R_23821928_SNP [dm6]	G	A	4.715e^-5	0.807	INTRON CG5549	TF binding site mE1_TFBS_chinmo
2R	16531073	2R_16531073_SNP [dm3] 2R_20643568_SNP [dm6]	T	C	4.747e^-5	0.807	UPSTREAM DMAP1 INTRON CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14695808	2R_14695808_SNP [dm3] 2R_18808303_SNP [dm6]	C	T	4.829e^-5	0.807	DOWNSTREAM CG15096 INTERGENIC
3L	10515325	3L_10515325_SNP [dm3] 3L_10522225_SNP [dm6]	T	C	4.855e^-5	0.807	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	15570203	X_15570203_SNP [dm3] X_15676170_SNP [dm6]	C	G	4.934e^-5	0.807	INTRON CG12708
2L	9078985	2L_9078985_SNP [dm3] 2L_9078985_SNP [dm6]	A	G	4.935e^-5	0.807	DOWNSTREAM CG12439 INTERGENIC
3L	12564284	3L_12564284_DEL [dm3] 3L_12571184_DEL [dm6]	CGTG	C	4.956e^-5	0.807	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	1080219	2R_1080219_SNP [dm3] 2R_5192714_SNP [dm6]	G	A	5.093e^-5	0.807	INTRON Nipped-A
2R	2075232	2R_2075232_SNP [dm3] 2R_6187727_SNP [dm6]	T	A	5.233e^-5	0.807	DOWNSTREAM Ptr INTRON Ptr
X	6310024	X_6310024_MNP [dm3] X_6415991_MNP [dm6]	ACTT	CGGC	5.294e^-5	0.807	INTERGENIC
X	6310029	X_6310029_SNP [dm3] X_6415996_SNP [dm6]	T	A	5.294e^-5	0.807	INTERGENIC
X	6310034	X_6310034_MNP [dm3] X_6416001_MNP [dm6]	GAATG	CGCAA	5.294e^-5	0.807	INTERGENIC
X	6310041	X_6310041_SNP [dm3] X_6416008_SNP [dm6]	A	G	5.294e^-5	0.807	INTERGENIC
X	6310054	X_6310054_SNP [dm3] X_6416021_SNP [dm6]	G	T	5.294e^-5	0.807	INTERGENIC
2L	9941770	2L_9941770_SNP [dm3] 2L_9941770_SNP [dm6]	G	A	5.434e^-5	0.807	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619 DOWNSTREAM CG4619	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19129632	2L_19129632_SNP [dm3] 2L_19129632_SNP [dm6]	A	G	5.510e^-5	0.807	UTR_3_PRIME Aats-asn DOWNSTREAM Aats-asn & 1 other	TF binding site mE1_TFBS_cad
2R	15444033	2R_15444033_SNP [dm3] 2R_19556528_SNP [dm6]	G	A	5.583e^-5	0.807	INTRON sm
2L	5404803	2L_5404803_SNP [dm3] 2L_5404803_SNP [dm6]	A	C	5.591e^-5	0.807	UTR_5_PRIME H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	13335960	2R_13335960_SNP [dm3] 2R_17448455_SNP [dm6]	T	A	5.634e^-5	0.807	UPSTREAM mthl4 DOWNSTREAM mthl3 INTERGENIC
3L	9342975	3L_9342975_SNP [dm3] 3L_9349875_SNP [dm6]	C	A	5.660e^-5	0.807	DOWNSTREAM UGP INTRON PGRP-LF
2L	9685671	2L_9685671_SNP [dm3] 2L_9685671_SNP [dm6]	A	G	5.683e^-5	0.807	INTRON Pka-C1
2R	18225802	2R_18225802_SNP [dm3] 2R_22338297_SNP [dm6]	A	G	5.723e^-5	0.807	INTRON Liprin-gamma
3R	20971597	3R_20971597_DEL [dm3] 3R_25145875_DEL [dm6]	AA	A	5.783e^-5	0.807	INTERGENIC
2R	19024086	2R_19024086_SNP [dm3] 2R_23136563_SNP [dm6]	T	G	5.829e^-5	0.807	INTERGENIC
X	6453887	X_6453887_SNP [dm3] X_6559854_SNP [dm6]	C	T	5.846e^-5	0.807	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14695767	2R_14695767_SNP [dm3] 2R_18808262_SNP [dm6]	C	T	5.918e^-5	0.807	DOWNSTREAM CG15096 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	3939278	2R_3939278_SNP [dm3] 2R_8051773_SNP [dm6]	A	T	6.043e^-5	0.807	DOWNSTREAM CG12769 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h
2R	17950492	2R_17950492_SNP [dm3] 2R_22062987_SNP [dm6]	G	A	6.104e^-5	0.807	INTRON Snp
X	16308641	X_16308641_SNP [dm3] X_16414608_SNP [dm6]	T	A	6.158e^-5	0.807	UTR_3_PRIME CG4301 UPSTREAM Traf-like DOWNSTREAM CG4301
2L	5666822	2L_5666822_SNP [dm3] 2L_5666822_SNP [dm6]	G	A	6.164e^-5	0.807	INTRON Hsp60C
X	2700506	X_2700506_SNP [dm3] X_2806473_SNP [dm6]	A	C	6.237e^-5	0.807	INTRON kirre
2L	15533435	2L_15533435_SNP [dm3] 2L_15533435_SNP [dm6]	C	A	6.315e^-5	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18010385	X_18010385_SNP [dm3] X_18116352_SNP [dm6]	G	A	6.403e^-5	0.807	INTRON wupA	regulatory region REDfly_CRMs
2R	1359334	2R_1359334_SNP [dm3] 2R_5471829_SNP [dm6]	A	G	6.436e^-5	0.807	INTRON CG30440	TF binding site mE1_TFBS_cad
2L	15533428	2L_15533428_SNP [dm3] 2L_15533428_SNP [dm6]	T	G	6.562e^-5	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2714545	3L_2714545_SNP [dm3] 3L_2714545_SNP [dm6]	T	G	6.568e^-5	0.807	INTERGENIC
X	16308630	X_16308630_SNP [dm3] X_16414597_SNP [dm6]	G	A	6.618e^-5	0.807	UTR_3_PRIME CG4301 UPSTREAM Traf-like DOWNSTREAM CG4301
3R	13660865	3R_13660865_SNP [dm3] 3R_17835143_SNP [dm6]	A	G	6.624e^-5	0.807	INTRON tinc
2R	1616957	2R_1616957_SNP [dm3] 2R_5729452_SNP [dm6]	A	T	6.629e^-5	0.807	INTERGENIC
X	21457549	X_21457549_SNP [dm3] X_21586522_SNP [dm6]	G	A	6.650e^-5	0.807	INTERGENIC
2R	1080299	2R_1080299_DEL [dm3] 2R_5192794_DEL [dm6]	GTTCG	G	6.704e^-5	0.807	INTRON Nipped-A
2R	1080358	2R_1080358_DEL [dm3] 2R_5192853_DEL [dm6]	GG	G	6.799e^-5	0.807	INTRON Nipped-A
3L	11123183	3L_11123183_SNP [dm3] 3L_11130083_SNP [dm6]	C	A	6.812e^-5	0.807	SYNONYMOUS_CODING CG42575 UPSTREAM nol	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2326787	X_2326787_SNP [dm3] X_2432754_SNP [dm6]	G	A	6.839e^-5	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	4831370	2L_4831370_SNP [dm3] 2L_4831370_SNP [dm6]	C	T	6.863e^-5	0.807	UPSTREAM CG2976 INTRON Ir25a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5847142	2L_5847142_SNP [dm3] 2L_5847142_SNP [dm6]	T	C	6.958e^-5	0.807	INTRON TrissinR
3L	12785243	3L_12785243_DEL [dm3] 3L_12792143_DEL [dm6]	TC	G	6.966e^-5	0.807	INTRON Atg1 & 1 other
2R	1078283	2R_1078283_SNP [dm3] 2R_5190778_SNP [dm6]	T	G	6.981e^-5	0.807	INTRON Nipped-A	transposable element FlyBase
2L	5709091	2L_5709091_SNP [dm3] 2L_5709091_SNP [dm6]	G	A	7.029e^-5	0.807	UPSTREAM CG7236 INTRON CG7236
2R	16273933	2R_16273933_SNP [dm3] 2R_20386428_SNP [dm6]	T	G	7.055e^-5	0.807	INTERGENIC
3R	13976881	3R_13976881_SNP [dm3] 3R_18151159_SNP [dm6]	A	G	7.068e^-5	0.807	UPSTREAM CG14316 INTERGENIC
3R	9745198	3R_9745198_SNP [dm3] 3R_13919476_SNP [dm6]	A	T	7.080e^-5	0.807	INTERGENIC
3L	2714895	3L_2714895_SNP [dm3] 3L_2714895_SNP [dm6]	G	A	7.156e^-5	0.807	INTERGENIC
2R	11782608	2R_11782608_SNP [dm3] 2R_15895103_SNP [dm6]	C	T	7.189e^-5	0.807	DOWNSTREAM CG33463 INTRON sli	regulatory region REDfly_CRMs
3L	18494985	3L_18494985_SNP [dm3] 3L_18501885_SNP [dm6]	G	A	7.206e^-5	0.807	INTRON AstC-R2
3L	11478100	3L_11478100_INS [dm3] 3L_11485000_INS [dm6]	G	GC	7.221e^-5	0.807	INTERGENIC
3R	8167858	3R_8167858_SNP [dm3] 3R_12342136_SNP [dm6]	A	T	7.286e^-5	0.807	NON_SYNONYMOUS_CODING CG44956
2R	16273927	2R_16273927_SNP [dm3] 2R_20386422_SNP [dm6]	T	A	7.307e^-5	0.807	INTERGENIC
3R	6501191	3R_6501191_SNP [dm3] 3R_10675469_SNP [dm6]	A	T	7.382e^-5	0.807	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	11269036	3R_11269036_SNP [dm3] 3R_15443314_SNP [dm6]	T	A	7.511e^-5	0.807	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad
2R	16273922	2R_16273922_SNP [dm3] 2R_20386417_SNP [dm6]	T	A	7.521e^-5	0.807	INTERGENIC
2R	7031256	2R_7031256_SNP [dm3] 2R_11143751_SNP [dm6]	A	T	7.526e^-5	0.807	UPSTREAM CG13229 INTRON CG13229
2R	8244129	2R_8244129_SNP [dm3] 2R_12356624_SNP [dm6]	C	T	7.603e^-5	0.807	SYNONYMOUS_CODING CG30049	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	5709074	2L_5709074_SNP [dm3] 2L_5709074_SNP [dm6]	A	G	7.648e^-5	0.807	UPSTREAM CG7236 INTRON CG7236
2R	5401079	2R_5401079_SNP [dm3] 2R_9513574_SNP [dm6]	C	A	7.715e^-5	0.807	INTRON brp
X	18011801	X_18011801_SNP [dm3] X_18117768_SNP [dm6]	A	C	7.752e^-5	0.807	UPSTREAM wupA INTERGENIC
2R	18240196	2R_18240196_SNP [dm3] 2R_22352691_SNP [dm6]	C	T	7.758e^-5	0.807	INTRON Liprin-gamma
3R	11811820	3R_11811820_SNP [dm3] 3R_15986098_SNP [dm6]	G	T	7.791e^-5	0.807	UPSTREAM srp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	509198	3L_509198_SNP [dm3] 3L_509198_SNP [dm6]	A	C	7.914e^-5	0.807	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2055203	2R_2055203_SNP [dm3] 2R_6167698_SNP [dm6]	C	G	7.918e^-5	0.807	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	5405804	2L_5405804_SNP [dm3] 2L_5405804_SNP [dm6]	A	T	8.017e^-5	0.807	INTRON H15	TF binding site BDTNP1_TFBS_twi
3R	19216559	3R_19216559_SNP [dm3] 3R_23390837_SNP [dm6]	C	T	8.041e^-5	0.807	DOWNSTREAM CR43387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	5405730	2L_5405730_SNP [dm3] 2L_5405730_SNP [dm6]	G	A	8.067e^-5	0.807	INTRON H15
2L	9102441	2L_9102441_SNP [dm3] 2L_9102441_SNP [dm6]	G	T	8.070e^-5	0.807	INTERGENIC
2L	12767848	2L_12767848_SNP [dm3] 2L_12767848_SNP [dm6]	G	A	8.082e^-5	0.807	INTERGENIC	TF binding site mE1_TFBS_Stat92E
3L	14344447	3L_14344447_SNP [dm3] 3L_14351347_SNP [dm6]	A	T	8.090e^-5	0.807	INTRON fz
2R	18688140	2R_18688140_SNP [dm3] 2R_22800635_SNP [dm6]	C	G	8.137e^-5	0.807	SYNONYMOUS_CODING blw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8669368	2R_8669368_SNP [dm3] 2R_12781863_SNP [dm6]	A	T	8.163e^-5	0.807	INTRON sca	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	16273934	2R_16273934_SNP [dm3] 2R_20386429_SNP [dm6]	T	A	8.212e^-5	0.807	INTERGENIC
2L	548546	2L_548546_SNP [dm3] 2L_548546_SNP [dm6]	G	A	8.311e^-5	0.807	INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	18225467	2R_18225467_SNP [dm3] 2R_22337962_SNP [dm6]	G	T	8.327e^-5	0.807	INTRON Liprin-gamma
2R	2075144	2R_2075144_SNP [dm3] 2R_6187639_SNP [dm6]	C	A	8.334e^-5	0.807	DOWNSTREAM Ptr INTRON Ptr
2L	9685674	2L_9685674_SNP [dm3] 2L_9685674_SNP [dm6]	A	G	8.346e^-5	0.807	INTRON Pka-C1
2L	9685703	2L_9685703_SNP [dm3] 2L_9685703_SNP [dm6]	A	G	8.346e^-5	0.807	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl
X	15364136	X_15364136_SNP [dm3] X_15470103_SNP [dm6]	G	A	8.387e^-5	0.807	SYNONYMOUS_CODING Grip128	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27135746	3R_27135746_SNP [dm3] 3R_31310024_SNP [dm6]	G	C	8.417e^-5	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16273939	2R_16273939_SNP [dm3] 2R_20386434_SNP [dm6]	A	G	8.431e^-5	0.807	INTERGENIC
2R	16273942	2R_16273942_SNP [dm3] 2R_20386437_SNP [dm6]	T	A	8.431e^-5	0.807	INTERGENIC
2L	15533406	2L_15533406_SNP [dm3] 2L_15533406_SNP [dm6]	T	G	8.441e^-5	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11101719	3L_11101719_SNP [dm3] 3L_11108619_SNP [dm6]	C	T	8.520e^-5	0.807	SYNONYMOUS_CODING CG12522 DOWNSTREAM CG34012
2R	18349099	2R_18349099_SNP [dm3] 2R_22461594_SNP [dm6]	G	T	8.568e^-5	0.807	INTRON CG10384
3R	5213034	3R_5213034_INS [dm3] 3R_9387312_INS [dm6]	C	CAAACTAACTTAAAGTCTCG...	8.575e^-5	0.807	INTRON FER	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9938563	3L_9938563_SNP [dm3] 3L_9945463_SNP [dm6]	G	A	8.625e^-5	0.807	SYNONYMOUS_CODING CG34356	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	17565628	X_17565628_SNP [dm3] X_17671595_SNP [dm6]	T	A	8.684e^-5	0.807	DOWNSTREAM chas INTRON CG12990
2R	14568868	2R_14568868_SNP [dm3] 2R_18681363_SNP [dm6]	G	C	8.689e^-5	0.807	SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435 UPSTREAM CG44435	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8988213	2L_8988213_SNP [dm3] 2L_8988213_SNP [dm6]	T	A	8.749e^-5	0.807	INTRON rost
2L	9685690	2L_9685690_SNP [dm3] 2L_9685690_SNP [dm6]	T	A	8.799e^-5	0.807	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl
3R	11652950	3R_11652950_SNP [dm3] 3R_15827228_SNP [dm6]	A	G	8.899e^-5	0.807	SYNONYMOUS_CODING CG4576 INTRON rec
3L	3269857	3L_3269857_SNP [dm3] 3L_3269857_SNP [dm6]	C	T	8.965e^-5	0.807	DOWNSTREAM CG34265 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6952663	X_6952663_DEL [dm3] X_7058630_DEL [dm6]	CGGCG	C	9.072e^-5	0.807	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	19643131	3L_19643131_SNP [dm3] 3L_19650031_SNP [dm6]	C	A	9.139e^-5	0.807	UPSTREAM Oat DOWNSTREAM tey INTERGENIC
2R	11816107	2R_11816107_SNP [dm3] 2R_15928602_SNP [dm6]	T	C	9.141e^-5	0.807	UPSTREAM bdg INTRON bdg
2L	9079204	2L_9079204_SNP [dm3] 2L_9079204_SNP [dm6]	G	T	9.194e^-5	0.807	INTERGENIC
3R	26048450	3R_26048450_SNP [dm3] 3R_30222728_SNP [dm6]	C	G	9.257e^-5	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	9685726	2L_9685726_SNP [dm3] 2L_9685726_SNP [dm6]	T	G	9.311e^-5	0.807	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7366925	2L_7366925_SNP [dm3] 2L_7366925_SNP [dm6]	A	T	9.376e^-5	0.807	INTRON Wnt10
2R	15838910	2R_15838910_SNP [dm3] 2R_19951405_SNP [dm6]	T	A	9.445e^-5	0.807	UTR_5_PRIME CG10822
2L	8987863	2L_8987863_SNP [dm3] 2L_8987863_SNP [dm6]	G	A	9.530e^-5	0.807	INTRON rost
2L	7360639	2L_7360639_SNP [dm3] 2L_7360639_SNP [dm6]	C	G	9.542e^-5	0.807	INTERGENIC
3L	3919225	3L_3919225_SNP [dm3] 3L_3919225_SNP [dm6]	G	C	9.629e^-5	0.807	INTRON Eip63F-1
3R	18452057	3R_18452057_SNP [dm3] 3R_22626335_SNP [dm6]	T	G	9.642e^-5	0.807	UTR_5_PRIME loco INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	2182114	2R_2182114_SNP [dm3] 2R_6294609_SNP [dm6]	T	A	9.716e^-5	0.807	INTERGENIC	transposable element FlyBase
X	5854445	X_5854445_SNP [dm3] X_5960412_SNP [dm6]	C	A	9.734e^-5	0.807	NON_SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12254655	3L_12254655_SNP [dm3] 3L_12261555_SNP [dm6]	G	C	9.747e^-5	0.807	INTRON app
2L	9950537	2L_9950537_SNP [dm3] 2L_9950537_SNP [dm6]	A	G	9.773e^-5	0.807	UPSTREAM mir-87 INTERGENIC
2R	14152953	2R_14152953_INS [dm3] 2R_18265448_INS [dm6]	A	AA	9.831e^-5	0.807	INTERGENIC
2R	684128	2R_684128_SNP [dm3] 2R_4796623_SNP [dm6]	G	A	9.838e^-5	0.807	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	577204	2R_577204_SNP [dm3] 2R_4689699_SNP [dm6]	G	C	9.908e^-5	0.807	INTERGENIC	transposable element FlyBase
3L	11104776	3L_11104776_SNP [dm3] 3L_11111676_SNP [dm6]	C	T	1.005e^-4	0.807	SYNONYMOUS_CODING CG7638 DOWNSTREAM Sod
3L	11104980	3L_11104980_SNP [dm3] 3L_11111880_SNP [dm6]	C	A	1.005e^-4	0.807	UTR_3_PRIME CG7638 DOWNSTREAM Sod
2L	10784743	2L_10784743_SNP [dm3] 2L_10784743_SNP [dm6]	C	A	1.015e^-4	0.807	DOWNSTREAM CR44582 INTRON CG31869
3L	6058604	3L_6058604_SNP [dm3] 3L_6065504_SNP [dm6]	T	G	1.020e^-4	0.807	UPSTREAM CG42269 INTERGENIC
2R	4217898	2R_4217898_INS [dm3] 2R_8330393_INS [dm6]	A	AACACCG	1.026e^-4	0.807	INTRON pdm3
X	20989831	X_20989831_SNP [dm3] X_21118804_SNP [dm6]	G	T	1.031e^-4	0.807	DOWNSTREAM CR44374 INTRON CG15445	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10359770	3L_10359770_SNP [dm3] 3L_10366670_SNP [dm6]	G	A	1.032e^-4	0.807	EXON CR44327
3L	12254809	3L_12254809_SNP [dm3] 3L_12261709_SNP [dm6]	A	G	1.033e^-4	0.807	INTRON app	TF binding site mE1_TFBS_inv
2L	21368665	2L_21368665_SNP [dm3] 2L_21368665_SNP [dm6]	G	C	1.037e^-4	0.807	INTRON Gr39b
2L	10442241	2L_10442241_SNP [dm3] 2L_10442241_SNP [dm6]	T	C	1.037e^-4	0.807	UPSTREAM loh & 1 other INTERGENIC
2R	16828814	2R_16828814_SNP [dm3] 2R_20941309_SNP [dm6]	C	T	1.040e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20606283	X_20606283_SNP [dm3] X_20735256_SNP [dm6]	T	A	1.045e^-4	0.807	SYNONYMOUS_CODING CG1324	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3582866	3L_3582866_SNP [dm3] 3L_3582866_SNP [dm6]	G	C	1.059e^-4	0.807	INTRON Eip63E	TF binding site mE1_TFBS_inv
3R	14360189	3R_14360189_SNP [dm3] 3R_18534467_SNP [dm6]	C	G	1.064e^-4	0.807	INTRON fru
2L	5404660	2L_5404660_SNP [dm3] 2L_5404660_SNP [dm6]	A	G	1.064e^-4	0.807	UTR_5_PRIME H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	16778278	2L_16778278_SNP [dm3] 2L_16778278_SNP [dm6]	C	T	1.066e^-4	0.807	INTRON Mhc
2L	9076552	2L_9076552_SNP [dm3] 2L_9076552_SNP [dm6]	T	C	1.067e^-4	0.807	UPSTREAM CG12439 INTERGENIC
2L	8770636	2L_8770636_SNP [dm3] 2L_8770636_SNP [dm6]	G	A	1.069e^-4	0.807	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
X	20612452	X_20612452_SNP [dm3] X_20741425_SNP [dm6]	C	A	1.071e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	14695777	2R_14695777_SNP [dm3] 2R_18808272_SNP [dm6]	A	G	1.075e^-4	0.807	DOWNSTREAM CG15096 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	7031314	2R_7031314_SNP [dm3] 2R_11143809_SNP [dm6]	G	A	1.079e^-4	0.807	UPSTREAM CG13229 INTRON CG13229
3R	23926095	3R_23926095_SNP [dm3] 3R_28100373_SNP [dm6]	A	T	1.080e^-4	0.807	INTERGENIC
2R	14670526	2R_14670526_SNP [dm3] 2R_18783021_SNP [dm6]	A	T	1.081e^-4	0.807	UPSTREAM CG15080 INTERGENIC
2L	10442221	2L_10442221_SNP [dm3] 2L_10442221_SNP [dm6]	G	C	1.095e^-4	0.807	UPSTREAM loh & 1 other INTERGENIC
2R	1080257	2R_1080257_DEL [dm3] 2R_5192752_DEL [dm6]	CAATCGACAGCTTACTGCAT...	C	1.113e^-4	0.807	INTRON Nipped-A
3R	24547528	3R_24547528_SNP [dm3] 3R_28721806_SNP [dm6]	C	T	1.115e^-4	0.807	SPLICE_SITE_REGION htt INTRON htt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	4967917	2L_4967917_SNP [dm3] 2L_4967917_SNP [dm6]	T	A	1.116e^-4	0.807	UTR_3_PRIME Scox UPSTREAM Trip1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	7470531	3R_7470531_SNP [dm3] 3R_11644809_SNP [dm6]	G	A	1.122e^-4	0.807	INTRON Csk
2L	8769505	2L_8769505_SNP [dm3] 2L_8769505_SNP [dm6]	C	T	1.124e^-4	0.807	SYNONYMOUS_CODING CG9465 UPSTREAM CG9463
2L	3820711	2L_3820711_SNP [dm3] 2L_3820711_SNP [dm6]	A	G	1.133e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	9876554	3R_9876554_SNP [dm3] 3R_14050832_SNP [dm6]	G	A	1.139e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11104958	3L_11104958_SNP [dm3] 3L_11111858_SNP [dm6]	G	A	1.141e^-4	0.807	SYNONYMOUS_CODING CG7638 DOWNSTREAM Sod
2L	21189930	2L_21189930_SNP [dm3] 2L_21189930_SNP [dm6]	A	T	1.145e^-4	0.807	INTRON Ret
2L	15533367	2L_15533367_SNP [dm3] 2L_15533367_SNP [dm6]	T	G	1.147e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4792207	2L_4792207_SNP [dm3] 2L_4792207_SNP [dm6]	C	A	1.148e^-4	0.807	INTRON CG15630
3R	14834015	3R_14834015_SNP [dm3] 3R_19008293_SNP [dm6]	G	A	1.151e^-4	0.807	INTRON gukh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16412969	2R_16412969_SNP [dm3] 2R_20525464_SNP [dm6]	A	G	1.151e^-4	0.807	UPSTREAM CG13422 EXON CR44650
X	18012111	X_18012111_INS [dm3] X_18118078_INS [dm6]	G	GG	1.157e^-4	0.807	INTERGENIC
3L	12785329	3L_12785329_SNP [dm3] 3L_12792229_SNP [dm6]	G	T	1.159e^-4	0.807	INTRON Atg1 & 1 other
3L	19901407	3L_19901407_SNP [dm3] 3L_19908307_SNP [dm6]	A	G	1.160e^-4	0.807	INTRON Mi-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9102397	2L_9102397_SNP [dm3] 2L_9102397_SNP [dm6]	C	T	1.162e^-4	0.807	INTERGENIC
3R	10183666	3R_10183666_SNP [dm3] 3R_14357944_SNP [dm6]	C	T	1.167e^-4	0.807	DOWNSTREAM CG31320 INTRON NK7.1
2R	16274016	2R_16274016_SNP [dm3] 2R_20386511_SNP [dm6]	T	C	1.169e^-4	0.807	INTERGENIC
2L	5652545	2L_5652545_SNP [dm3] 2L_5652545_SNP [dm6]	T	G	1.179e^-4	0.807	INTRON CG31646
2L	4984877	2L_4984877_SNP [dm3] 2L_4984877_SNP [dm6]	T	C	1.184e^-4	0.807	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_chinmo
2L	10442212	2L_10442212_SNP [dm3] 2L_10442212_SNP [dm6]	T	A	1.190e^-4	0.807	UPSTREAM loh & 1 other INTERGENIC
2L	10442215	2L_10442215_SNP [dm3] 2L_10442215_SNP [dm6]	T	A	1.190e^-4	0.807	UPSTREAM loh & 1 other INTERGENIC
2L	10442218	2L_10442218_SNP [dm3] 2L_10442218_SNP [dm6]	A	T	1.190e^-4	0.807	UPSTREAM loh & 1 other INTERGENIC
3L	11478166	3L_11478166_SNP [dm3] 3L_11485066_SNP [dm6]	G	A	1.221e^-4	0.807	INTERGENIC
3L	6761018	3L_6761018_SNP [dm3] 3L_6767918_SNP [dm6]	G	A	1.223e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20072274	2L_20072274_SNP [dm3] 2L_20072274_SNP [dm6]	G	A	1.228e^-4	0.807	UPSTREAM CG10730 INTRON bwa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5652063	2L_5652063_SNP [dm3] 2L_5652063_SNP [dm6]	C	T	1.229e^-4	0.807	UTR_5_PRIME CG31646
2L	5867293	2L_5867293_SNP [dm3] 2L_5867293_SNP [dm6]	G	A	1.229e^-4	0.807	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12785316	3L_12785316_SNP [dm3] 3L_12792216_SNP [dm6]	G	C	1.240e^-4	0.807	INTRON Atg1 & 1 other
3L	5144804	3L_5144804_SNP [dm3] 3L_5151704_SNP [dm6]	G	A	1.254e^-4	0.807	SPLICE_SITE_REGION Gen SYNONYMOUS_CODING Gen UPSTREAM Srp54k	TF binding site BDTNP1_TFBS_da
2R	8130026	2R_8130026_SNP [dm3] 2R_12242521_SNP [dm6]	T	C	1.263e^-4	0.807	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2L	19129620	2L_19129620_SNP [dm3] 2L_19129620_SNP [dm6]	A	C	1.271e^-4	0.807	UTR_3_PRIME Aats-asn DOWNSTREAM Aats-asn & 1 other	TF binding site mE1_TFBS_cad
3L	5998197	3L_5998197_SNP [dm3] 3L_6005097_SNP [dm6]	C	A	1.271e^-4	0.807	INTRON PVRAP	TF binding site mE1_TFBS_cad
X	2326487	X_2326487_SNP [dm3] X_2432454_SNP [dm6]	A	C	1.291e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_sens
2R	11816083	2R_11816083_SNP [dm3] 2R_15928578_SNP [dm6]	G	T	1.293e^-4	0.807	UPSTREAM bdg INTRON bdg
3L	8766283	3L_8766283_SNP [dm3] 3L_8773183_SNP [dm6]	G	T	1.299e^-4	0.807	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
3R	16781076	3R_16781076_SNP [dm3] 3R_20955354_SNP [dm6]	G	T	1.305e^-4	0.807	INTRON Atpalpha
2R	1359906	2R_1359906_SNP [dm3] 2R_5472401_SNP [dm6]	C	G	1.311e^-4	0.807	INTRON CG30440
2L	9073597	2L_9073597_SNP [dm3] 2L_9073597_SNP [dm6]	A	G	1.311e^-4	0.807	INTERGENIC
3L	6058091	3L_6058091_SNP [dm3] 3L_6064991_SNP [dm6]	A	T	1.315e^-4	0.807	INTERGENIC
2L	6854449	2L_6854449_SNP [dm3] 2L_6854449_SNP [dm6]	A	G	1.326e^-4	0.807	SYNONYMOUS_CODING l_2_k09022 DOWNSTREAM Rca1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11040688	3R_11040688_SNP [dm3] 3R_15214966_SNP [dm6]	T	C	1.326e^-4	0.807	SYNONYMOUS_CODING SIDL DOWNSTREAM CG4210
2L	8989103	2L_8989103_SNP [dm3] 2L_8989103_SNP [dm6]	C	A	1.326e^-4	0.807	START_GAINED rost UTR_5_PRIME rost
2R	14163300	2R_14163300_SNP [dm3] 2R_18275795_SNP [dm6]	G	A	1.333e^-4	0.807	UTR_3_PRIME Ote	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10267808	3L_10267808_DEL [dm3] 3L_10274708_DEL [dm6]	TG	T	1.337e^-4	0.807	DOWNSTREAM Or67d INTERGENIC
3L	10845140	3L_10845140_SNP [dm3] 3L_10852040_SNP [dm6]	T	G	1.337e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16118956	2R_16118956_SNP [dm3] 2R_20231451_SNP [dm6]	C	T	1.337e^-4	0.807	UPSTREAM CG11044 INTERGENIC
2L	16778279	2L_16778279_SNP [dm3] 2L_16778279_SNP [dm6]	C	A	1.342e^-4	0.807	INTRON Mhc
2L	14028188	2L_14028188_SNP [dm3] 2L_14028188_SNP [dm6]	A	G	1.354e^-4	0.807	INTRON CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2713873	3L_2713873_DEL [dm3] 3L_2713873_DEL [dm6]	TCTT	C	1.358e^-4	0.807	INTERGENIC
3R	26669557	3R_26669557_SNP [dm3] 3R_30843835_SNP [dm6]	G	C	1.373e^-4	0.807	INTERGENIC
3L	5997888	3L_5997888_SNP [dm3] 3L_6004788_SNP [dm6]	C	T	1.383e^-4	0.807	INTRON PVRAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18227883	2R_18227883_SNP [dm3] 2R_22340378_SNP [dm6]	G	T	1.384e^-4	0.807	INTRON Liprin-gamma	TF binding site mE1_TFBS_chinmo
2L	9549769	2L_9549769_DEL [dm3] 2L_9549769_DEL [dm6]	TT	T	1.387e^-4	0.807	INTRON jp
3R	24430474	3R_24430474_SNP [dm3] 3R_28604752_SNP [dm6]	A	G	1.392e^-4	0.807	UTR_3_PRIME Hrb98DE INTRON Hrb98DE
2R	1358536	2R_1358536_SNP [dm3] 2R_5471031_SNP [dm6]	G	A	1.393e^-4	0.807	INTRON CG30440	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2R	2517363	2R_2517363_SNP [dm3] 2R_6629858_SNP [dm6]	G	A	1.395e^-4	0.807	INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12624503	X_12624503_SNP [dm3] X_12730470_SNP [dm6]	T	C	1.398e^-4	0.807	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16119667	2R_16119667_SNP [dm3] 2R_20232162_SNP [dm6]	G	C	1.402e^-4	0.807	UTR_5_PRIME CG11044 UPSTREAM tRNA:G3:56EFb
2R	16273951	2R_16273951_SNP [dm3] 2R_20386446_SNP [dm6]	T	A	1.403e^-4	0.807	INTERGENIC
2R	16273953	2R_16273953_SNP [dm3] 2R_20386448_SNP [dm6]	T	A	1.403e^-4	0.807	INTERGENIC
2L	5404475	2L_5404475_SNP [dm3] 2L_5404475_SNP [dm6]	A	T	1.405e^-4	0.807	START_GAINED H15 UTR_5_PRIME H15 UPSTREAM H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	5666735	2L_5666735_SNP [dm3] 2L_5666735_SNP [dm6]	G	A	1.408e^-4	0.807	INTRON Hsp60C
X	20612843	X_20612843_SNP [dm3] X_20741816_SNP [dm6]	A	G	1.412e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	9950535	2L_9950535_SNP [dm3] 2L_9950535_SNP [dm6]	C	T	1.418e^-4	0.807	UPSTREAM mir-87 INTERGENIC
X	6310042	X_6310042_DEL [dm3] X_6416009_DEL [dm6]	CTTATTTT	C	1.420e^-4	0.807	INTERGENIC
2R	20985312	2R_20985312_SNP [dm3] 2R_25097789_SNP [dm6]	T	C	1.424e^-4	0.807	INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2174810	3L_2174810_DEL [dm3] 3L_2174810_DEL [dm6]	TT	T	1.427e^-4	0.807	UPSTREAM CG15820 INTERGENIC
3L	12785355	3L_12785355_SNP [dm3] 3L_12792255_SNP [dm6]	C	A	1.430e^-4	0.807	INTRON Atg1 & 1 other
2R	16828872	2R_16828872_SNP [dm3] 2R_20941367_SNP [dm6]	G	A	1.434e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18240209	2R_18240209_SNP [dm3] 2R_22352704_SNP [dm6]	G	A	1.434e^-4	0.807	INTRON Liprin-gamma
2L	8989104	2L_8989104_SNP [dm3] 2L_8989104_SNP [dm6]	C	T	1.440e^-4	0.807	UTR_5_PRIME rost
3R	10219310	3R_10219310_SNP [dm3] 3R_14393588_SNP [dm6]	G	A	1.448e^-4	0.807	SYNONYMOUS_CODING cv-c
2L	7615894	2L_7615894_SNP [dm3] 2L_7615894_SNP [dm6]	T	C	1.458e^-4	0.807	NON_SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
2L	14759355	2L_14759355_SNP [dm3] 2L_14759355_SNP [dm6]	T	A	1.462e^-4	0.807	INTERGENIC
2L	9079138	2L_9079138_SNP [dm3] 2L_9079138_SNP [dm6]	T	G	1.465e^-4	0.807	INTERGENIC
3R	13660919	3R_13660919_SNP [dm3] 3R_17835197_SNP [dm6]	G	T	1.465e^-4	0.807	INTRON tinc
2R	14525578	2R_14525578_SNP [dm3] 2R_18638073_SNP [dm6]	C	T	1.471e^-4	0.807	SYNONYMOUS_CODING CG30122	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
2L	7870213	2L_7870213_SNP [dm3] 2L_7870213_SNP [dm6]	G	C	1.472e^-4	0.807	INTRON Proc
2L	10247341	2L_10247341_SNP [dm3] 2L_10247341_SNP [dm6]	A	G	1.472e^-4	0.807	UPSTREAM chico DOWNSTREAM bsk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18174968	X_18174968_SNP [dm3] X_18280935_SNP [dm6]	C	G	1.474e^-4	0.807	INTRON upd3
3L	3775779	3L_3775779_SNP [dm3] 3L_3775779_SNP [dm6]	C	A	1.476e^-4	0.807	INTRON CG32264
3R	27066963	3R_27066963_SNP [dm3] 3R_31241241_SNP [dm6]	A	G	1.480e^-4	0.807	INTRON qless
2L	8241547	2L_8241547_SNP [dm3] 2L_8241547_SNP [dm6]	C	A	1.483e^-4	0.807	NON_SYNONYMOUS_CODING Spn28F UPSTREAM CR43262
2L	7602848	2L_7602848_SNP [dm3] 2L_7602848_SNP [dm6]	A	T	1.485e^-4	0.807	INTERGENIC
2L	16855827	2L_16855827_SNP [dm3] 2L_16855827_SNP [dm6]	A	T	1.485e^-4	0.807	INTRON CG31809	transposable element FlyBase
X	19547806	X_19547806_SNP [dm3] X_19653773_SNP [dm6]	T	C	1.486e^-4	0.807	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15533431	2L_15533431_SNP [dm3] 2L_15533431_SNP [dm6]	C	A	1.489e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10913525	3R_10913525_SNP [dm3] 3R_15087803_SNP [dm6]	A	T	1.490e^-4	0.807	INTRON CG6966
2R	3346733	2R_3346733_DEL [dm3] 2R_7459228_DEL [dm6]	TA	T	1.491e^-4	0.807	UPSTREAM Inos DOWNSTREAM CG11141 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14543842	2L_14543842_SNP [dm3] 2L_14543842_SNP [dm6]	T	C	1.495e^-4	0.807	INTERGENIC
2R	9806476	2R_9806476_SNP [dm3] 2R_13918971_SNP [dm6]	G	T	1.496e^-4	0.807	INTRON shot	TF binding site mE1_TFBS_Trl
3R	24263810	3R_24263810_SNP [dm3] 3R_28438088_SNP [dm6]	G	A	1.498e^-4	0.807	INTRON beat-VI
3R	17037071	3R_17037071_SNP [dm3] 3R_21211349_SNP [dm6]	T	C	1.501e^-4	0.807	INTRON SNF4Agamma
3L	9695571	3L_9695571_SNP [dm3] 3L_9702471_SNP [dm6]	A	T	1.501e^-4	0.807	SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5331139	X_5331139_SNP [dm3] X_5437106_SNP [dm6]	G	A	1.503e^-4	0.807	INTERGENIC
3L	19631605	3L_19631605_SNP [dm3] 3L_19638505_SNP [dm6]	C	T	1.511e^-4	0.807	SYNONYMOUS_CODING CG8786 UTR_3_PRIME CG8786 DOWNSTREAM CG8786
3L	6820663	3L_6820663_SNP [dm3] 3L_6827563_SNP [dm6]	G	C	1.529e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	16308663	X_16308663_SNP [dm3] X_16414630_SNP [dm6]	A	T	1.530e^-4	0.807	UTR_3_PRIME CG4301 UPSTREAM Traf-like DOWNSTREAM CG4301
2L	7870217	2L_7870217_SNP [dm3] 2L_7870217_SNP [dm6]	A	T	1.544e^-4	0.807	INTRON Proc
3L	12930566	3L_12930566_SNP [dm3] 3L_12937466_SNP [dm6]	A	C	1.554e^-4	0.807	INTERGENIC
3L	9697195	3L_9697195_INS [dm3] 3L_9704095_INS [dm6]	T	TAAAA	1.555e^-4	0.807	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4998902	2L_4998902_SNP [dm3] 2L_4998902_SNP [dm6]	G	C	1.563e^-4	0.807	INTRON Rtnl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_Trl
3L	9341332	3L_9341332_SNP [dm3] 3L_9348232_SNP [dm6]	T	A	1.569e^-4	0.807	UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
3L	9692038	3L_9692038_SNP [dm3] 3L_9698938_SNP [dm6]	G	C	1.573e^-4	0.807	INTRON UbcD4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3313169	3L_3313169_SNP [dm3] 3L_3313169_SNP [dm6]	C	A	1.573e^-4	0.807	NON_SYNONYMOUS_CODING ZnT63C UTR_3_PRIME ZnT63C	TF binding site mE1_TFBS_cad
2R	16474758	2R_16474758_SNP [dm3] 2R_20587253_SNP [dm6]	C	T	1.575e^-4	0.807	UPSTREAM bl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	19882269	3L_19882269_SNP [dm3] 3L_19889169_SNP [dm6]	T	C	1.582e^-4	0.807	UTR_3_PRIME Su_Tpl_ UPSTREAM Mi-2 INTRON Mi-2
2R	8938902	2R_8938902_SNP [dm3] 2R_13051397_SNP [dm6]	T	G	1.584e^-4	0.807	INTERGENIC
2R	6158702	2R_6158702_SNP [dm3] 2R_10271197_SNP [dm6]	T	G	1.584e^-4	0.807	UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_inv
3L	14052304	3L_14052304_SNP [dm3] 3L_14059204_SNP [dm6]	C	A	1.585e^-4	0.807	INTRON CG32138
2L	5404513	2L_5404513_SNP [dm3] 2L_5404513_SNP [dm6]	C	T	1.588e^-4	0.807	UTR_5_PRIME H15 UPSTREAM H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	17566481	3R_17566481_DEL [dm3] 3R_21740759_DEL [dm6]	GA	G	1.591e^-4	0.807	INTRON CG5849	TF binding site mE1_TFBS_HSA
2R	12456810	2R_12456810_SNP [dm3] 2R_16569305_SNP [dm6]	A	G	1.591e^-4	0.807	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3619310	2L_3619310_SNP [dm3] 2L_3619310_SNP [dm6]	G	A	1.592e^-4	0.807	NON_SYNONYMOUS_CODING Dot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	1366968	2R_1366968_SNP [dm3] 2R_5479463_SNP [dm6]	A	C	1.602e^-4	0.807	INTRON CG30440	transposable element FlyBase
2R	11369347	2R_11369347_SNP [dm3] 2R_15481842_SNP [dm6]	C	A	1.615e^-4	0.807	INTRON CG8180	TF binding site BDTNP1_TFBS_dl
3L	9523155	3L_9523155_SNP [dm3] 3L_9530055_SNP [dm6]	A	G	1.616e^-4	0.807	SYNONYMOUS_CODING Or67a
X	2326765	X_2326765_INS [dm3] X_2432732_INS [dm6]	G	GCCGATCGA	1.617e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	3582886	3L_3582886_SNP [dm3] 3L_3582886_SNP [dm6]	C	T	1.621e^-4	0.807	INTRON Eip63E	TF binding site mE1_TFBS_inv
3L	13481424	3L_13481424_SNP [dm3] 3L_13488324_SNP [dm6]	C	A	1.637e^-4	0.807	INTRON Tgi	TF binding site BDTNP1_TFBS_twi
3L	11308521	3L_11308521_SNP [dm3] 3L_11315421_SNP [dm6]	G	C	1.649e^-4	0.807	EXON CR44361
2L	13679532	2L_13679532_INS [dm3] 2L_13679532_INS [dm6]	T	TTT	1.649e^-4	0.807	INTRON CG31814
2R	16317394	2R_16317394_SNP [dm3] 2R_20429889_SNP [dm6]	A	G	1.654e^-4	0.807	INTRON CG12484
3R	24430671	3R_24430671_SNP [dm3] 3R_28604949_SNP [dm6]	A	G	1.657e^-4	0.807	UTR_3_PRIME Hrb98DE DOWNSTREAM Hrb98DE INTRON Hrb98DE
X	19224647	X_19224647_SNP [dm3] X_19330614_SNP [dm6]	A	C	1.659e^-4	0.807	INTRON nAChRalpha7
2L	7281732	2L_7281732_SNP [dm3] 2L_7281732_SNP [dm6]	C	T	1.660e^-4	0.807	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	23983894	3R_23983894_INS [dm3] 3R_28158172_INS [dm6]	G	GTTTCTTTAG	1.668e^-4	0.807	INTRON CG34354	TF binding site mE1_TFBS_inv
X	6310031	X_6310031_SNP [dm3] X_6415998_SNP [dm6]	C	A	1.669e^-4	0.807	INTERGENIC
2L	1626493	2L_1626493_SNP [dm3] 2L_1626493_SNP [dm6]	C	A	1.669e^-4	0.807	UPSTREAM CR44603 INTERGENIC
2R	18988002	2R_18988002_SNP [dm3] 2R_23100479_SNP [dm6]	G	A	1.670e^-4	0.807	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7520555	3R_7520555_SNP [dm3] 3R_11694833_SNP [dm6]	A	T	1.671e^-4	0.807	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	13325222	3L_13325222_SNP [dm3] 3L_13332122_SNP [dm6]	G	C	1.680e^-4	0.807	INTERGENIC
2L	6447881	2L_6447881_SNP [dm3] 2L_6447881_SNP [dm6]	G	T	1.681e^-4	0.807	UPSTREAM CG9527 DOWNSTREAM retm INTRON CG9527	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17677743	X_17677743_SNP [dm3] X_17783710_SNP [dm6]	G	A	1.682e^-4	0.807	INTERGENIC
3R	15041597	3R_15041597_SNP [dm3] 3R_19215875_SNP [dm6]	T	A	1.685e^-4	0.807	UTR_3_PRIME vib DOWNSTREAM cry
3L	8696567	3L_8696567_SNP [dm3] 3L_8703467_SNP [dm6]	T	A	1.695e^-4	0.807	INTERGENIC
2L	6566555	2L_6566555_SNP [dm3] 2L_6566555_SNP [dm6]	G	A	1.703e^-4	0.807	UPSTREAM CG13766 INTERGENIC
X	20612692	X_20612692_SNP [dm3] X_20741665_SNP [dm6]	T	C	1.703e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	19010838	3R_19010838_DEL [dm3] 3R_23185116_DEL [dm6]	TC	T	1.709e^-4	0.807	UTR_3_PRIME Irk1 DOWNSTREAM cnc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9695505	3L_9695505_SNP [dm3] 3L_9702405_SNP [dm6]	A	G	1.710e^-4	0.807	SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9339743	3L_9339743_SNP [dm3] 3L_9346643_SNP [dm6]	A	G	1.714e^-4	0.807	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	13254586	3L_13254586_SNP [dm3] 3L_13261486_SNP [dm6]	C	A	1.721e^-4	0.807	INTRON caps
3L	15262423	3L_15262423_SNP [dm3] 3L_15269323_SNP [dm6]	T	A	1.723e^-4	0.807	INTERGENIC
2R	16273974	2R_16273974_SNP [dm3] 2R_20386469_SNP [dm6]	T	A	1.725e^-4	0.807	INTERGENIC
2L	5243998	2L_5243998_SNP [dm3] 2L_5243998_SNP [dm6]	T	C	1.725e^-4	0.807	SYNONYMOUS_CODING tkv INTRON tkv EXON CR14033
2R	1359531	2R_1359531_SNP [dm3] 2R_5472026_SNP [dm6]	A	T	1.730e^-4	0.807	INTRON CG30440	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9725571	3L_9725571_SNP [dm3] 3L_9732471_SNP [dm6]	T	C	1.737e^-4	0.807	INTRON CG6749	TF binding site mE1_TFBS_cad
2L	5666757	2L_5666757_SNP [dm3] 2L_5666757_SNP [dm6]	G	T	1.742e^-4	0.807	INTRON Hsp60C
2L	14304576	2L_14304576_SNP [dm3] 2L_14304576_SNP [dm6]	G	A	1.744e^-4	0.807	INTRON wb	TF binding site mE1_TFBS_inv
2L	10442227	2L_10442227_SNP [dm3] 2L_10442227_SNP [dm6]	C	T	1.747e^-4	0.807	UPSTREAM loh & 1 other INTERGENIC
3R	27138387	3R_27138387_SNP [dm3] 3R_31312665_SNP [dm6]	G	A	1.753e^-4	0.807	INTRON CG34347
3L	12254818	3L_12254818_DEL [dm3] 3L_12261718_DEL [dm6]	CA	T	1.757e^-4	0.807	INTRON app	TF binding site mE1_TFBS_inv
X	12624475	X_12624475_SNP [dm3] X_12730442_SNP [dm6]	C	T	1.762e^-4	0.807	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
3R	19640066	3R_19640066_SNP [dm3] 3R_23814344_SNP [dm6]	C	T	1.764e^-4	0.807	SYNONYMOUS_CODING eIF4G2 INTRON CG34355 & 1 other
3L	4909314	3L_4909314_SNP [dm3] 3L_4909314_SNP [dm6]	C	T	1.769e^-4	0.807	INTERGENIC
3L	9341288	3L_9341288_SNP [dm3] 3L_9348188_SNP [dm6]	C	A	1.772e^-4	0.807	UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
3L	3294093	3L_3294093_SNP [dm3] 3L_3294093_SNP [dm6]	C	T	1.782e^-4	0.807	UPSTREAM CG12009 INTRON CG12009
2R	16273957	2R_16273957_SNP [dm3] 2R_20386452_SNP [dm6]	C	T	1.795e^-4	0.807	INTERGENIC
2L	4830844	2L_4830844_DEL [dm3] 2L_4830844_DEL [dm6]	TTG	T	1.802e^-4	0.807	UTR_3_PRIME Ir25a UPSTREAM mir-4912 & 1 other DOWNSTREAM Ir25a INTRAGENIC Ir25a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	7602927	2L_7602927_SNP [dm3] 2L_7602927_SNP [dm6]	C	T	1.810e^-4	0.807	INTERGENIC
2L	1057085	2L_1057085_SNP [dm3] 2L_1057085_SNP [dm6]	T	C	1.811e^-4	0.807	INTRON S
3R	22576842	3R_22576842_SNP [dm3] 3R_26751120_SNP [dm6]	T	C	1.812e^-4	0.807	INTERGENIC
2R	1358362	2R_1358362_SNP [dm3] 2R_5470857_SNP [dm6]	A	G	1.814e^-4	0.807	INTRON CG30440	TF binding site mE1_TFBS_cad transposable element FlyBase
3R	24427450	3R_24427450_SNP [dm3] 3R_28601728_SNP [dm6]	A	T	1.827e^-4	0.807	UPSTREAM snoRNA:Psi28S-3405b & 3 others DOWNSTREAM snoRNA:Psi28S-3405a INTRON Hrb98DE EXON snoRNA:Psi28S-3305a
3R	14608635	3R_14608635_SNP [dm3] 3R_18782913_SNP [dm6]	T	G	1.827e^-4	0.807	INTRON CG7720
3L	5086830	3L_5086830_DEL [dm3] 3L_5086830_DEL [dm6]	TTCATACA	CGAC	1.828e^-4	0.807	INTERGENIC
2R	15877307	2R_15877307_SNP [dm3] 2R_19989802_SNP [dm6]	G	C	1.832e^-4	0.807	INTERGENIC
X	2326564	X_2326564_SNP [dm3] X_2432531_SNP [dm6]	T	G	1.836e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	12624268	X_12624268_DEL [dm3] X_12730235_DEL [dm6]	AAGTA	CT	1.838e^-4	0.807	INTRON Smr & 1 other
2R	11816074	2R_11816074_SNP [dm3] 2R_15928569_SNP [dm6]	T	C	1.840e^-4	0.807	UPSTREAM bdg INTRON bdg
2R	17927470	2R_17927470_SNP [dm3] 2R_22039965_SNP [dm6]	T	A	1.841e^-4	0.807	UPSTREAM CG34370 INTERGENIC
X	21456873	X_21456873_DEL [dm3] X_21585846_DEL [dm6]	CTGCCGCAACC...	C	1.843e^-4	0.807	INTERGENIC	transposable element FlyBase
3L	11119796	3L_11119796_SNP [dm3] 3L_11126696_SNP [dm6]	C	A	1.843e^-4	0.807	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7268875	2R_7268875_SNP [dm3] 2R_11381370_SNP [dm6]	A	G	1.852e^-4	0.807	UTR_3_PRIME Sod3 INTRON Sod3
2L	4910305	2L_4910305_SNP [dm3] 2L_4910305_SNP [dm6]	C	T	1.855e^-4	0.807	SYNONYMOUS_CODING hoe1
X	21457124	X_21457124_SNP [dm3] X_21586097_SNP [dm6]	G	T	1.856e^-4	0.807	INTERGENIC
2R	8411220	2R_8411220_INS [dm3] 2R_12523715_INS [dm6]	T	TATCTATCT	1.857e^-4	0.807	DOWNSTREAM CG33632 INTERGENIC
3L	19903892	3L_19903892_SNP [dm3] 3L_19910792_SNP [dm6]	A	C	1.867e^-4	0.807	SYNONYMOUS_CODING Prp3 UPSTREAM Mi-2 DOWNSTREAM CR43889	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	9341317	3L_9341317_SNP [dm3] 3L_9348217_SNP [dm6]	T	C	1.870e^-4	0.807	UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
3L	13778300	3L_13778300_SNP [dm3] 3L_13785200_SNP [dm6]	T	A	1.875e^-4	0.807	INTRON bru-3
2R	1367135	2R_1367135_SNP [dm3] 2R_5479630_SNP [dm6]	G	T	1.888e^-4	0.807	INTRON CG30440	transposable element FlyBase
3L	6041650	3L_6041650_SNP [dm3] 3L_6048550_SNP [dm6]	C	G	1.890e^-4	0.807	INTERGENIC
3R	26533584	3R_26533584_SNP [dm3] 3R_30707862_SNP [dm6]	C	G	1.892e^-4	0.807	INTERGENIC
2R	1346500	2R_1346500_SNP [dm3] 2R_5458995_SNP [dm6]	G	C	1.892e^-4	0.807	INTERGENIC	transposable element FlyBase
2L	7845777	2L_7845777_SNP [dm3] 2L_7845777_SNP [dm6]	T	G	1.893e^-4	0.807	UTR_3_PRIME CG14535
3L	9339750	3L_9339750_SNP [dm3] 3L_9346650_SNP [dm6]	G	T	1.895e^-4	0.807	NON_SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC INTRON PGRP-LC
2R	14749940	2R_14749940_SNP [dm3] 2R_18862435_SNP [dm6]	A	T	1.895e^-4	0.807	UPSTREAM CG43069 & 1 other INTERGENIC
3L	10036336	3L_10036336_SNP [dm3] 3L_10043236_SNP [dm6]	C	G	1.900e^-4	0.807	INTRON dpr6	TF binding site BDTNP1_TFBS_slp1
X	6450794	X_6450794_SNP [dm3] X_6556761_SNP [dm6]	A	G	1.904e^-4	0.807	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	21456807	X_21456807_SNP [dm3] X_21585780_SNP [dm6]	A	C	1.906e^-4	0.807	INTERGENIC	transposable element FlyBase
2R	9795967	2R_9795967_SNP [dm3] 2R_13908462_SNP [dm6]	G	C	1.909e^-4	0.807	INTRON shot	TF binding site mE1_TFBS_cad
2R	2434164	2R_2434164_SNP [dm3] 2R_6546659_SNP [dm6]	A	C	1.911e^-4	0.807	INTRON jing	TF binding site BDTNP1_TFBS_dl
3L	277382	3L_277382_SNP [dm3] 3L_277382_SNP [dm6]	G	C	1.911e^-4	0.807	UPSTREAM RhoGEF3 DOWNSTREAM ttm2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1754077	3L_1754077_SNP [dm3] 3L_1754077_SNP [dm6]	G	A	1.912e^-4	0.807	SYNONYMOUS_CODING Cht2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	20612463	X_20612463_SNP [dm3] X_20741436_SNP [dm6]	A	C	1.913e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	505733	2L_505733_SNP [dm3] 2L_505733_SNP [dm6]	C	T	1.924e^-4	0.807	INTRON ush
3R	25089214	3R_25089214_SNP [dm3] 3R_29263492_SNP [dm6]	A	C	1.927e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	1635722	2L_1635722_INS [dm3] 2L_1635722_INS [dm6]	C	CTC	1.939e^-4	0.807	INTERGENIC
X	2011421	X_2011421_SNP [dm3] X_2117388_SNP [dm6]	T	G	1.940e^-4	0.807	SYNONYMOUS_CODING ph-d	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18200409	2R_18200409_SNP [dm3] 2R_22312904_SNP [dm6]	C	A	1.947e^-4	0.807	UPSTREAM wdp EXON CR44758
3R	27173844	3R_27173844_SNP [dm3] 3R_31348122_SNP [dm6]	T	G	1.948e^-4	0.807	INTRON CG34347
X	9410139	X_9410139_SNP [dm3] X_9516106_SNP [dm6]	A	T	1.951e^-4	0.807	INTRON CG32700
3R	22507553	3R_22507553_SNP [dm3] 3R_26681831_SNP [dm6]	T	G	1.952e^-4	0.807	UTR_5_PRIME beat-VII
2L	7631884	2L_7631884_SNP [dm3] 2L_7631884_SNP [dm6]	T	C	1.956e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	7030375	2R_7030375_SNP [dm3] 2R_11142870_SNP [dm6]	G	A	1.957e^-4	0.807	SYNONYMOUS_CODING CG13229
2L	5918914	2L_5918914_SNP [dm3] 2L_5918914_SNP [dm6]	G	A	1.973e^-4	0.807	SYNONYMOUS_CODING bchs
3L	9697160	3L_9697160_SNP [dm3] 3L_9704060_SNP [dm6]	G	A	1.983e^-4	0.807	UPSTREAM CG16711 & 1 other INTERGENIC
3L	10360567	3L_10360567_DEL [dm3] 3L_10367467_DEL [dm6]	AAGCATAATTA...	A	1.987e^-4	0.807	DOWNSTREAM CR44327 INTERGENIC
2R	789073	2R_789073_DEL [dm3] 2R_4901568_DEL [dm6]	AATTTGTATATAAATCATCA...	TCTGTTTGTAAATG...	1.988e^-4	0.807	INTRON CG44102
3R	26533268	3R_26533268_SNP [dm3] 3R_30707546_SNP [dm6]	C	T	1.991e^-4	0.807	INTERGENIC
3L	1922319	3L_1922319_SNP [dm3] 3L_1922319_SNP [dm6]	T	A	1.994e^-4	0.807	INTRON Dbx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20423055	3R_20423055_SNP [dm3] 3R_24597333_SNP [dm6]	C	T	2.011e^-4	0.807	INTRON mld	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18093417	2R_18093417_SNP [dm3] 2R_22205912_SNP [dm6]	C	A	2.012e^-4	0.807	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
2R	2040615	2R_2040615_SNP [dm3] 2R_6153110_SNP [dm6]	C	T	2.012e^-4	0.807	UPSTREAM tRNA:N5:42Ag & 1 other DOWNSTREAM tRNA:N5:42Af INTRON EcR
X	21457733	X_21457733_INS [dm3] X_21586706_INS [dm6]	A	AAA	2.017e^-4	0.807	INTERGENIC
2R	2801014	2R_2801014_SNP [dm3] 2R_6913509_SNP [dm6]	T	A	2.018e^-4	0.807	INTRON CG30158
2R	18226223	2R_18226223_SNP [dm3] 2R_22338718_SNP [dm6]	C	T	2.023e^-4	0.807	INTRON Liprin-gamma
2R	2411887	2R_2411887_SNP [dm3] 2R_6524382_SNP [dm6]	C	G	2.023e^-4	0.807	INTRON jing	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19470814	2L_19470814_SNP [dm3] 2L_19470814_SNP [dm6]	A	T	2.025e^-4	0.807	UPSTREAM CR45723 DOWNSTREAM CR43839 & 1 other INTERGENIC
2R	4218122	2R_4218122_SNP [dm3] 2R_8330617_SNP [dm6]	C	T	2.031e^-4	0.807	INTRON pdm3
3R	27139293	3R_27139293_SNP [dm3] 3R_31313571_SNP [dm6]	G	T	2.042e^-4	0.807	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26045378	3R_26045378_SNP [dm3] 3R_30219656_SNP [dm6]	T	A	2.043e^-4	0.807	INTERGENIC
3L	12439871	3L_12439871_SNP [dm3] 3L_12446771_SNP [dm6]	G	C	2.048e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	11036019	X_11036019_INS [dm3] X_11141986_INS [dm6]	G	GG	2.051e^-4	0.807	UPSTREAM CG15199 & 1 other DOWNSTREAM CR44054 INTERGENIC
2R	8846299	2R_8846299_SNP [dm3] 2R_12958794_SNP [dm6]	A	T	2.052e^-4	0.807	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10790929	2L_10790929_SNP [dm3] 2L_10790929_SNP [dm6]	T	C	2.056e^-4	0.807	UTR_3_PRIME CG31870 DOWNSTREAM CG31870 INTRON CG31869
X	6451331	X_6451331_SNP [dm3] X_6557298_SNP [dm6]	A	G	2.059e^-4	0.807	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	1376960	2R_1376960_SNP [dm3] 2R_5489455_SNP [dm6]	G	T	2.066e^-4	0.807	INTRON CG30440	transposable element FlyBase
3R	18324842	3R_18324842_INS [dm3] 3R_22499120_INS [dm6]	C	CC	2.070e^-4	0.807	INTRON Octbeta1R
2R	20985402	2R_20985402_SNP [dm3] 2R_25097879_SNP [dm6]	C	T	2.077e^-4	0.807	INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19577394	2R_19577394_SNP [dm3] 2R_23689871_SNP [dm6]	T	C	2.082e^-4	0.807	SYNONYMOUS_CODING Pal2 DOWNSTREAM CG30183
2L	10442249	2L_10442249_SNP [dm3] 2L_10442249_SNP [dm6]	G	T	2.082e^-4	0.807	UPSTREAM loh & 1 other INTERGENIC
3L	11374635	3L_11374635_SNP [dm3] 3L_11381535_SNP [dm6]	G	A	2.093e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	12830705	3L_12830705_SNP [dm3] 3L_12837605_SNP [dm6]	T	C	2.095e^-4	0.807	INTRON CG10960
2L	7036952	2L_7036952_SNP [dm3] 2L_7036952_SNP [dm6]	C	T	2.101e^-4	0.807	SYNONYMOUS_CODING CG11266 UTR_3_PRIME CG11266 UPSTREAM milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	931772	2L_931772_SNP [dm3] 2L_931772_SNP [dm6]	T	G	2.103e^-4	0.807	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15532759	2L_15532759_SNP [dm3] 2L_15532759_SNP [dm6]	G	C	2.112e^-4	0.807	INTERGENIC
3L	3291005	3L_3291005_SNP [dm3] 3L_3291005_SNP [dm6]	G	A	2.114e^-4	0.807	UPSTREAM CG12009 DOWNSTREAM CG12017 INTERGENIC
2R	18093414	2R_18093414_SNP [dm3] 2R_22205909_SNP [dm6]	G	T	2.124e^-4	0.807	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
2R	18093418	2R_18093418_SNP [dm3] 2R_22205913_SNP [dm6]	T	A	2.124e^-4	0.807	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
3R	26533583	3R_26533583_SNP [dm3] 3R_30707861_SNP [dm6]	G	A	2.127e^-4	0.807	INTERGENIC
X	2605498	X_2605498_SNP [dm3] X_2711465_SNP [dm6]	G	T	2.129e^-4	0.807	SYNONYMOUS_CODING CG2681 DOWNSTREAM CG2685	TF binding site mE1_TFBS_cad
2L	6219013	2L_6219013_SNP [dm3] 2L_6219013_SNP [dm6]	G	T	2.131e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	19799058	3R_19799058_SNP [dm3] 3R_23973336_SNP [dm6]	T	C	2.134e^-4	0.807	INTRON CG31140
2L	19129279	2L_19129279_DEL [dm3] 2L_19129279_DEL [dm6]	TTATATCA	T	2.136e^-4	0.807	UTR_3_PRIME l_2_37Cd DOWNSTREAM Aats-asn	TF binding site mE1_TFBS_cad
2R	14163493	2R_14163493_SNP [dm3] 2R_18275988_SNP [dm6]	C	A	2.136e^-4	0.807	SYNONYMOUS_CODING Ote	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18474292	3R_18474292_SNP [dm3] 3R_22648570_SNP [dm6]	C	G	2.136e^-4	0.807	INTRON CG45058
2L	10869459	2L_10869459_SNP [dm3] 2L_10869459_SNP [dm6]	G	A	2.138e^-4	0.807	UPSTREAM CG12517 INTERGENIC
X	20606733	X_20606733_SNP [dm3] X_20735706_SNP [dm6]	T	G	2.139e^-4	0.807	UTR_5_PRIME CG1324	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10668902	3L_10668902_INS [dm3] 3L_10675802_INS [dm6]	A	AA	2.149e^-4	0.807	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	1358761	2R_1358761_SNP [dm3] 2R_5471256_SNP [dm6]	A	G	2.149e^-4	0.807	INTRON CG30440	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	9280175	3L_9280175_SNP [dm3] 3L_9287075_SNP [dm6]	C	T	2.153e^-4	0.807	UTR_3_PRIME GluRIB DOWNSTREAM GluRIB
X	20605159	X_20605159_SNP [dm3] X_20734132_SNP [dm6]	A	G	2.153e^-4	0.807	DOWNSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	17060826	3R_17060826_SNP [dm3] 3R_21235104_SNP [dm6]	A	G	2.154e^-4	0.807	INTRON e	regulatory region REDfly_CRMs
3L	9341505	3L_9341505_SNP [dm3] 3L_9348405_SNP [dm6]	A	G	2.155e^-4	0.807	DOWNSTREAM PGRP-LC INTERGENIC
3R	13020203	3R_13020203_SNP [dm3] 3R_17194481_SNP [dm6]	T	G	2.157e^-4	0.807	INTRON Mur89F
2R	6577351	2R_6577351_INS [dm3] 2R_10689846_INS [dm6]	T	TTT	2.161e^-4	0.807	INTRON stan
2R	18093406	2R_18093406_DEL [dm3] 2R_22205901_DEL [dm6]	AGCT	A	2.176e^-4	0.807	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
2R	18093412	2R_18093412_SNP [dm3] 2R_22205907_SNP [dm6]	T	G	2.176e^-4	0.807	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
2R	1361967	2R_1361967_SNP [dm3] 2R_5474462_SNP [dm6]	T	G	2.179e^-4	0.807	INTRON CG30440	transposable element FlyBase
3R	26045473	3R_26045473_SNP [dm3] 3R_30219751_SNP [dm6]	G	T	2.197e^-4	0.807	INTERGENIC
3R	18673609	3R_18673609_SNP [dm3] 3R_22847887_SNP [dm6]	G	T	2.205e^-4	0.807	INTERGENIC
2L	12718175	2L_12718175_SNP [dm3] 2L_12718175_SNP [dm6]	T	A	2.208e^-4	0.807	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
2L	13982605	2L_13982605_SNP [dm3] 2L_13982605_SNP [dm6]	A	G	2.208e^-4	0.807	NON_SYNONYMOUS_CODING NimC2 DOWNSTREAM rk	TF binding site mE1_TFBS_cad
2L	12767017	2L_12767017_SNP [dm3] 2L_12767017_SNP [dm6]	T	A	2.211e^-4	0.807	INTERGENIC
X	21454859	X_21454859_SNP [dm3] X_21583832_SNP [dm6]	A	G	2.219e^-4	0.807	EXON CR44711
3L	14052318	3L_14052318_SNP [dm3] 3L_14059218_SNP [dm6]	T	A	2.219e^-4	0.807	INTRON CG32138
3R	24836843	3R_24836843_SNP [dm3] 3R_29011121_SNP [dm6]	T	A	2.221e^-4	0.807	INTRON wat
2R	18227913	2R_18227913_SNP [dm3] 2R_22340408_SNP [dm6]	T	G	2.226e^-4	0.807	INTRON Liprin-gamma
2R	16460577	2R_16460577_SNP [dm3] 2R_20573072_SNP [dm6]	T	G	2.227e^-4	0.807	INTRON qsm
2R	18985607	2R_18985607_SNP [dm3] 2R_23098084_SNP [dm6]	C	G	2.230e^-4	0.807	INTERGENIC
3L	12930487	3L_12930487_SNP [dm3] 3L_12937387_SNP [dm6]	C	A	2.237e^-4	0.807	INTERGENIC
3R	27145159	3R_27145159_SNP [dm3] 3R_31319437_SNP [dm6]	C	G	2.240e^-4	0.807	INTRON CG34347
2L	18337276	2L_18337276_SNP [dm3] 2L_18337276_SNP [dm6]	C	G	2.247e^-4	0.807	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8981631	2L_8981631_SNP [dm3] 2L_8981631_SNP [dm6]	A	G	2.249e^-4	0.807	DOWNSTREAM CG18662 INTRON CG13101
3R	17197321	3R_17197321_SNP [dm3] 3R_21371599_SNP [dm6]	A	G	2.252e^-4	0.807	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	8692853	3L_8692853_SNP [dm3] 3L_8699753_SNP [dm6]	G	A	2.259e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	12640559	2R_12640559_SNP [dm3] 2R_16753054_SNP [dm6]	C	A	2.261e^-4	0.807	UTR_3_PRIME unc-104
3L	11103180	3L_11103180_SNP [dm3] 3L_11110080_SNP [dm6]	C	T	2.261e^-4	0.807	SYNONYMOUS_CODING CG7638 UPSTREAM CG34012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	1357076	2R_1357076_SNP [dm3] 2R_5469571_SNP [dm6]	T	C	2.266e^-4	0.807	INTRON CG30440	transposable element FlyBase
2L	15533396	2L_15533396_SNP [dm3] 2L_15533396_SNP [dm6]	T	C	2.267e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	784211	2R_784211_SNP [dm3] 2R_4896706_SNP [dm6]	G	A	2.268e^-4	0.807	INTRON CG44102	transposable element FlyBase
2R	784212	2R_784212_SNP [dm3] 2R_4896707_SNP [dm6]	G	T	2.268e^-4	0.807	INTRON CG44102	transposable element FlyBase
3R	14346693	3R_14346693_SNP [dm3] 3R_18520971_SNP [dm6]	G	T	2.278e^-4	0.807	INTRON fru
2L	9073409	2L_9073409_SNP [dm3] 2L_9073409_SNP [dm6]	C	T	2.280e^-4	0.807	INTERGENIC
X	18840059	X_18840059_SNP [dm3] X_18946026_SNP [dm6]	C	T	2.282e^-4	0.807	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
2L	7444089	2L_7444089_SNP [dm3] 2L_7444089_SNP [dm6]	G	A	2.293e^-4	0.807	SYNONYMOUS_CODING CG5973
3L	6888627	3L_6888627_SNP [dm3] 3L_6895527_SNP [dm6]	G	T	2.298e^-4	0.807	INTERGENIC
2L	18138319	2L_18138319_SNP [dm3] 2L_18138319_SNP [dm6]	A	T	2.299e^-4	0.807	UPSTREAM kel DOWNSTREAM Socs36E INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	12930632	3L_12930632_SNP [dm3] 3L_12937532_SNP [dm6]	A	G	2.302e^-4	0.807	INTERGENIC
X	17933312	X_17933312_SNP [dm3] X_18039279_SNP [dm6]	G	A	2.304e^-4	0.807	START_GAINED Sh UTR_5_PRIME Sh
2R	14152921	2R_14152921_SNP [dm3] 2R_18265416_SNP [dm6]	C	T	2.311e^-4	0.807	INTERGENIC
2R	14153027	2R_14153027_SNP [dm3] 2R_18265522_SNP [dm6]	G	C	2.311e^-4	0.807	INTERGENIC
3R	16427813	3R_16427813_SNP [dm3] 3R_20602091_SNP [dm6]	T	A	2.313e^-4	0.807	INTRON bon	transposable element FlyBase
3L	9695529	3L_9695529_SNP [dm3] 3L_9702429_SNP [dm6]	T	C	2.330e^-4	0.807	SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9808463	2R_9808463_SNP [dm3] 2R_13920958_SNP [dm6]	A	G	2.334e^-4	0.807	INTRON shot
3L	12256856	3L_12256856_SNP [dm3] 3L_12263756_SNP [dm6]	T	C	2.335e^-4	0.807	INTRON app
2R	11374077	2R_11374077_SNP [dm3] 2R_15486572_SNP [dm6]	G	C	2.336e^-4	0.807	NON_SYNONYMOUS_CODING CG12964	TF binding site mE1_TFBS_chinmo
2L	10061186	2L_10061186_SNP [dm3] 2L_10061186_SNP [dm6]	C	G	2.342e^-4	0.807	INTRON Spn31A
3R	26088906	3R_26088906_SNP [dm3] 3R_30263184_SNP [dm6]	C	T	2.348e^-4	0.807	INTERGENIC
3L	12097495	3L_12097495_SNP [dm3] 3L_12104395_SNP [dm6]	T	C	2.349e^-4	0.807	INTERGENIC
3R	20266207	3R_20266207_SNP [dm3] 3R_24440485_SNP [dm6]	C	G	2.354e^-4	0.807	DOWNSTREAM CR43455 INTRON nAChRalpha1
3R	9811479	3R_9811479_DEL [dm3] 3R_13985757_DEL [dm6]	AA	A	2.354e^-4	0.807	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	11370565	2R_11370565_SNP [dm3] 2R_15483060_SNP [dm6]	T	A	2.360e^-4	0.807	UPSTREAM CG8180 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11744337	3L_11744337_SNP [dm3] 3L_11751237_SNP [dm6]	C	T	2.365e^-4	0.807	UPSTREAM Gr68a INTRON CG6024
2L	12228866	2L_12228866_SNP [dm3] 2L_12228866_SNP [dm6]	G	T	2.380e^-4	0.807	INTRON aret
2L	6148811	2L_6148811_SNP [dm3] 2L_6148811_SNP [dm6]	A	T	2.380e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2714700	3L_2714700_SNP [dm3] 3L_2714700_SNP [dm6]	C	T	2.380e^-4	0.807	INTERGENIC
2L	15532928	2L_15532928_SNP [dm3] 2L_15532928_SNP [dm6]	G	A	2.386e^-4	0.807	INTERGENIC
2R	18668970	2R_18668970_SNP [dm3] 2R_22781465_SNP [dm6]	T	A	2.388e^-4	0.807	INTRON CG42260
3L	6488252	3L_6488252_SNP [dm3] 3L_6495152_SNP [dm6]	C	T	2.390e^-4	0.807	SYNONYMOUS_CODING CG10144 UPSTREAM sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17433748	2R_17433748_SNP [dm3] 2R_21546243_SNP [dm6]	C	A	2.395e^-4	0.807	UPSTREAM Egfr INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Trl
3R	9811496	3R_9811496_DEL [dm3] 3R_13985774_DEL [dm6]	TG	T	2.396e^-4	0.807	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	3270208	3L_3270208_SNP [dm3] 3L_3270208_SNP [dm6]	A	G	2.400e^-4	0.807	UPSTREAM CG14960 INTERGENIC
2L	7632048	2L_7632048_DEL [dm3] 2L_7632048_DEL [dm6]	AA	A	2.401e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	21457547	X_21457547_SNP [dm3] X_21586520_SNP [dm6]	G	C	2.401e^-4	0.807	INTERGENIC
2L	1242610	2L_1242610_SNP [dm3] 2L_1242610_SNP [dm6]	G	A	2.403e^-4	0.807	UTR_3_PRIME CG5397 DOWNSTREAM CG5397	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18034996	3L_18034996_SNP [dm3] 3L_18041896_SNP [dm6]	G	A	2.411e^-4	0.807	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
X	10200994	X_10200994_SNP [dm3] X_10306961_SNP [dm6]	A	C	2.416e^-4	0.807	INTRON alpha-Man-I
3L	9524599	3L_9524599_SNP [dm3] 3L_9531499_SNP [dm6]	C	T	2.417e^-4	0.807	DOWNSTREAM Or67a INTERGENIC
3L	13926300	3L_13926300_SNP [dm3] 3L_13933200_SNP [dm6]	C	T	2.420e^-4	0.807	SYNONYMOUS_CODING Gl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	3899844	2L_3899844_SNP [dm3] 2L_3899844_SNP [dm6]	T	C	2.421e^-4	0.807	INTRON capu
X	16308634	X_16308634_SNP [dm3] X_16414601_SNP [dm6]	A	T	2.422e^-4	0.807	UTR_3_PRIME CG4301 UPSTREAM Traf-like DOWNSTREAM CG4301
3R	20575501	3R_20575501_SNP [dm3] 3R_24749779_SNP [dm6]	C	A	2.426e^-4	0.807	UTR_5_PRIME tld DOWNSTREAM tok	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9695761	3L_9695761_SNP [dm3] 3L_9702661_SNP [dm6]	C	A	2.431e^-4	0.807	INTRON CG6761	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11652851	3R_11652851_SNP [dm3] 3R_15827129_SNP [dm6]	A	G	2.437e^-4	0.807	SYNONYMOUS_CODING CG4576 INTRON rec
3L	9258709	3L_9258709_SNP [dm3] 3L_9265609_SNP [dm6]	T	G	2.455e^-4	0.807	INTRON GluRIB
2R	14169845	2R_14169845_SNP [dm3] 2R_18282340_SNP [dm6]	G	A	2.456e^-4	0.807	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17929699	2R_17929699_SNP [dm3] 2R_22042194_SNP [dm6]	A	G	2.456e^-4	0.807	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	19129461	2L_19129461_INS [dm3] 2L_19129461_INS [dm6]	A	AAAGA	2.459e^-4	0.807	DOWNSTREAM Aats-asn & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	11847572	3R_11847572_SNP [dm3] 3R_16021850_SNP [dm6]	T	A	2.467e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	5234639	2L_5234639_SNP [dm3] 2L_5234639_SNP [dm6]	G	A	2.468e^-4	0.807	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9079134	2L_9079134_SNP [dm3] 2L_9079134_SNP [dm6]	C	T	2.475e^-4	0.807	INTERGENIC
X	12624476	X_12624476_SNP [dm3] X_12730443_SNP [dm6]	C	T	2.487e^-4	0.807	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
X	8801961	X_8801961_INS [dm3] X_8907928_INS [dm6]	C	CGA	2.487e^-4	0.807	INTRON rdgA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	19902362	3L_19902362_DEL [dm3] 3L_19909262_DEL [dm6]	ACA	A	2.494e^-4	0.807	UTR_5_PRIME Su_Tpl_ UPSTREAM CR43889 INTRON Mi-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	16667233	X_16667233_SNP [dm3] X_16773200_SNP [dm6]	T	C	2.495e^-4	0.807	INTRON if	TF binding site BDTNP1_TFBS_da
2L	5666844	2L_5666844_SNP [dm3] 2L_5666844_SNP [dm6]	T	G	2.500e^-4	0.807	INTRON Hsp60C
2L	8245961	2L_8245961_SNP [dm3] 2L_8245961_SNP [dm6]	T	G	2.500e^-4	0.807	SYNONYMOUS_CODING CG8086 INTRON CG8086
2R	16273977	2R_16273977_SNP [dm3] 2R_20386472_SNP [dm6]	A	G	2.528e^-4	0.807	INTERGENIC
3R	18454816	3R_18454816_SNP [dm3] 3R_22629094_SNP [dm6]	C	A	2.534e^-4	0.807	UPSTREAM CR43474 INTRON loco EXON CR43475	regulatory region REDfly_CRMs
2L	4263681	2L_4263681_SNP [dm3] 2L_4263681_SNP [dm6]	C	T	2.543e^-4	0.807	INTERGENIC
3L	19874939	3L_19874939_SNP [dm3] 3L_19881839_SNP [dm6]	C	T	2.547e^-4	0.807	DOWNSTREAM Mi-2 & 1 other INTERGENIC
X	4638203	X_4638203_SNP [dm3] X_4744170_SNP [dm6]	A	T	2.553e^-4	0.807	INTERGENIC
2R	9765726	2R_9765726_SNP [dm3] 2R_13878221_SNP [dm6]	T	C	2.556e^-4	0.807	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_HSA
2R	1372452	2R_1372452_SNP [dm3] 2R_5484947_SNP [dm6]	A	T	2.556e^-4	0.807	INTRON CG30440
2R	1372453	2R_1372453_SNP [dm3] 2R_5484948_SNP [dm6]	A	T	2.556e^-4	0.807	INTRON CG30440
3L	19630170	3L_19630170_SNP [dm3] 3L_19637070_SNP [dm6]	G	T	2.572e^-4	0.807	DOWNSTREAM CG8786 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	12235901	3R_12235901_SNP [dm3] 3R_16410179_SNP [dm6]	G	A	2.572e^-4	0.807	INTERGENIC
2L	15533893	2L_15533893_SNP [dm3] 2L_15533893_SNP [dm6]	C	G	2.575e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10362687	3L_10362687_SNP [dm3] 3L_10369587_SNP [dm6]	G	T	2.575e^-4	0.807	INTERGENIC
2R	13140121	2R_13140121_SNP [dm3] 2R_17252616_SNP [dm6]	C	G	2.576e^-4	0.807	INTRON mbl	TF binding site BDTNP1_TFBS_twi
X	16813936	X_16813936_SNP [dm3] X_16919903_SNP [dm6]	G	T	2.576e^-4	0.807	INTRON CG4928
X	20146226	X_20146226_SNP [dm3] X_20275200_SNP [dm6]	C	T	2.578e^-4	0.807	INTERGENIC
2R	18550983	2R_18550983_SNP [dm3] 2R_22663478_SNP [dm6]	A	G	2.579e^-4	0.807	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
2L	7281529	2L_7281529_SNP [dm3] 2L_7281529_SNP [dm6]	C	A	2.579e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25234785	3R_25234785_SNP [dm3] 3R_29409063_SNP [dm6]	G	A	2.580e^-4	0.807	INTRON Ptp99A
2L	4910299	2L_4910299_SNP [dm3] 2L_4910299_SNP [dm6]	G	A	2.584e^-4	0.807	SYNONYMOUS_CODING hoe1
3R	23926073	3R_23926073_DEL [dm3] 3R_28100351_DEL [dm6]	TAG	A	2.584e^-4	0.807	INTERGENIC
2L	2668763	2L_2668763_SNP [dm3] 2L_2668763_SNP [dm6]	C	T	2.588e^-4	0.807	INTERGENIC
2R	16347132	2R_16347132_SNP [dm3] 2R_20459627_SNP [dm6]	G	A	2.603e^-4	0.807	SPLICE_SITE_REGION CG12484 INTRON CG12484
3R	14523018	3R_14523018_SNP [dm3] 3R_18697296_SNP [dm6]	A	C	2.607e^-4	0.807	INTERGENIC
2L	19129276	2L_19129276_SNP [dm3] 2L_19129276_SNP [dm6]	A	G	2.607e^-4	0.807	UTR_3_PRIME l_2_37Cd DOWNSTREAM Aats-asn	TF binding site mE1_TFBS_cad
3R	6435555	3R_6435555_DEL [dm3] 3R_10609833_DEL [dm6]	TTCTTCACATTTTT...	T	2.610e^-4	0.807	INTRON hth
X	12626323	X_12626323_INS [dm3] X_12732290_INS [dm6]	T	TCT	2.630e^-4	0.807	UTR_5_PRIME Smr INTRON Smr	TF binding site BDTNP1_TFBS_dl
X	2326545	X_2326545_SNP [dm3] X_2432512_SNP [dm6]	G	T	2.636e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2011403	X_2011403_SNP [dm3] X_2117370_SNP [dm6]	T	C	2.643e^-4	0.807	SYNONYMOUS_CODING ph-d	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3291006	3L_3291006_SNP [dm3] 3L_3291006_SNP [dm6]	G	A	2.645e^-4	0.807	UPSTREAM CG12009 DOWNSTREAM CG12017 INTERGENIC
2R	16485420	2R_16485420_SNP [dm3] 2R_20597915_SNP [dm6]	T	C	2.671e^-4	0.807	INTRON bl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6121340	3L_6121340_SNP [dm3] 3L_6128240_SNP [dm6]	A	T	2.675e^-4	0.807	INTRON l_3_mbn
X	21029166	X_21029166_SNP [dm3] X_21158139_SNP [dm6]	A	C	2.680e^-4	0.807	INTERGENIC	transposable element FlyBase
3R	26050745	3R_26050745_SNP [dm3] 3R_30225023_SNP [dm6]	A	T	2.680e^-4	0.807	INTERGENIC
X	20605678	X_20605678_SNP [dm3] X_20734651_SNP [dm6]	A	G	2.683e^-4	0.807	UTR_3_PRIME CG1324 DOWNSTREAM CG1324	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	9745185	3R_9745185_SNP [dm3] 3R_13919463_SNP [dm6]	C	G	2.686e^-4	0.807	INTERGENIC
3L	19586410	3L_19586410_SNP [dm3] 3L_19593310_SNP [dm6]	T	A	2.688e^-4	0.807	INTRON ash1
3L	2545668	3L_2545668_DEL [dm3] 3L_2545668_DEL [dm6]	TAAATTAAAGGCTTTGT...	T	2.688e^-4	0.807	INTRON Spn
2L	19129338	2L_19129338_SNP [dm3] 2L_19129338_SNP [dm6]	A	G	2.693e^-4	0.807	DOWNSTREAM Aats-asn & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	7741854	2L_7741854_SNP [dm3] 2L_7741854_SNP [dm6]	A	C	2.697e^-4	0.807	UPSTREAM Acp1 INTERGENIC
2R	10574670	2R_10574670_INS [dm3] 2R_14687165_INS [dm6]	TG	ACACA	2.697e^-4	0.807	INTRON mspo
3R	5213363	3R_5213363_SNP [dm3] 3R_9387641_SNP [dm6]	G	T	2.703e^-4	0.807	INTRON FER	TF binding site mE1_TFBS_HSA
2R	16358805	2R_16358805_SNP [dm3] 2R_20471300_SNP [dm6]	A	G	2.706e^-4	0.807	DOWNSTREAM CG12484 INTRON CG12484
3R	25784264	3R_25784264_SNP [dm3] 3R_29958542_SNP [dm6]	A	C	2.707e^-4	0.807	INTRON TkR99D
X	20981970	X_20981970_SNP [dm3] X_21110943_SNP [dm6]	C	T	2.708e^-4	0.807	SYNONYMOUS_CODING CG11566 UTR_3_PRIME stg1 DOWNSTREAM unc	TF binding site mE1_TFBS_chinmo
2R	18551006	2R_18551006_SNP [dm3] 2R_22663501_SNP [dm6]	C	G	2.709e^-4	0.807	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
3L	11102211	3L_11102211_SNP [dm3] 3L_11109111_SNP [dm6]	A	T	2.715e^-4	0.807	UPSTREAM CG7638 DOWNSTREAM CG12522 INTRON CG34012
2L	7912456	2L_7912456_SNP [dm3] 2L_7912456_SNP [dm6]	A	G	2.719e^-4	0.807	INTRON Snoo
2L	17118306	2L_17118306_SNP [dm3] 2L_17118306_SNP [dm6]	T	A	2.722e^-4	0.807	INTERGENIC
2L	5848574	2L_5848574_SNP [dm3] 2L_5848574_SNP [dm6]	G	A	2.733e^-4	0.807	INTRON TrissinR
2R	2407011	2R_2407011_SNP [dm3] 2R_6519506_SNP [dm6]	T	A	2.737e^-4	0.807	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15532566	2L_15532566_SNP [dm3] 2L_15532566_SNP [dm6]	T	C	2.746e^-4	0.807	INTERGENIC
3L	18212224	3L_18212224_SNP [dm3] 3L_18219124_SNP [dm6]	A	T	2.755e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	12032934	2R_12032934_SNP [dm3] 2R_16145429_SNP [dm6]	C	T	2.758e^-4	0.807	SYNONYMOUS_CODING Aats-cys DOWNSTREAM Ext2
3L	2173032	3L_2173032_SNP [dm3] 3L_2173032_SNP [dm6]	T	A	2.771e^-4	0.807	UTR_3_PRIME CG15820 UPSTREAM CR15821	TF binding site mE1_TFBS_cad
3R	26050292	3R_26050292_SNP [dm3] 3R_30224570_SNP [dm6]	T	C	2.772e^-4	0.807	INTERGENIC
3R	26050407	3R_26050407_SNP [dm3] 3R_30224685_SNP [dm6]	C	T	2.772e^-4	0.807	INTERGENIC
2L	7583366	2L_7583366_SNP [dm3] 2L_7583366_SNP [dm6]	G	T	2.774e^-4	0.807	DOWNSTREAM Spn28B INTERGENIC
3R	26058328	3R_26058328_SNP [dm3] 3R_30232606_SNP [dm6]	A	G	2.781e^-4	0.807	INTERGENIC
2R	11372488	2R_11372488_SNP [dm3] 2R_15484983_SNP [dm6]	G	T	2.786e^-4	0.807	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	21705201	3R_21705201_SNP [dm3] 3R_25879479_SNP [dm6]	G	A	2.786e^-4	0.807	INTRON Tsp96F	TF binding site mE1_TFBS_HSA
2R	14168976	2R_14168976_SNP [dm3] 2R_18281471_SNP [dm6]	T	A	2.798e^-4	0.807	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2172964	3L_2172964_SNP [dm3] 3L_2172964_SNP [dm6]	T	A	2.801e^-4	0.807	UPSTREAM CR15821 DOWNSTREAM CG15820 INTERGENIC	TF binding site mE1_TFBS_cad
3R	26050467	3R_26050467_SNP [dm3] 3R_30224745_SNP [dm6]	A	T	2.805e^-4	0.807	INTERGENIC
2R	18404542	2R_18404542_SNP [dm3] 2R_22517037_SNP [dm6]	A	G	2.807e^-4	0.807	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19573464	2R_19573464_SNP [dm3] 2R_23685941_SNP [dm6]	T	A	2.809e^-4	0.807	UPSTREAM l_2_efl INTRON St3
2L	19129313	2L_19129313_SNP [dm3] 2L_19129313_SNP [dm6]	G	T	2.810e^-4	0.807	UTR_3_PRIME l_2_37Cd DOWNSTREAM Aats-asn	TF binding site mE1_TFBS_cad
3L	10319532	3L_10319532_SNP [dm3] 3L_10326432_SNP [dm6]	G	A	2.821e^-4	0.807	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3R	14608636	3R_14608636_SNP [dm3] 3R_18782914_SNP [dm6]	C	T	2.822e^-4	0.807	INTRON CG7720
2R	18682008	2R_18682008_SNP [dm3] 2R_22794503_SNP [dm6]	A	G	2.828e^-4	0.807	INTRON CG42260
2L	7885351	2L_7885351_SNP [dm3] 2L_7885351_SNP [dm6]	G	T	2.830e^-4	0.807	UTR_5_PRIME SmE UPSTREAM CG34132 INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7885371	2L_7885371_SNP [dm3] 2L_7885371_SNP [dm6]	G	A	2.830e^-4	0.807	UTR_5_PRIME SmE UPSTREAM CG34132 INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7885387	2L_7885387_SNP [dm3] 2L_7885387_SNP [dm6]	C	T	2.830e^-4	0.807	UTR_5_PRIME SmE UPSTREAM CG34132 INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10855076	2L_10855076_SNP [dm3] 2L_10855076_SNP [dm6]	A	G	2.834e^-4	0.807	UTR_3_PRIME Dnz1 DOWNSTREAM CG43129	TF binding site mE1_TFBS_cad
2R	12241434	2R_12241434_SNP [dm3] 2R_16353929_SNP [dm6]	C	G	2.848e^-4	0.807	DOWNSTREAM CG30098 INTERGENIC
2R	12861426	2R_12861426_SNP [dm3] 2R_16973921_SNP [dm6]	T	C	2.867e^-4	0.807	UPSTREAM Cbp53E INTERGENIC
2L	5906943	2L_5906943_SNP [dm3] 2L_5906943_SNP [dm6]	A	G	2.869e^-4	0.807	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16119785	2R_16119785_SNP [dm3] 2R_20232280_SNP [dm6]	C	G	2.890e^-4	0.807	SYNONYMOUS_CODING CG11044 UPSTREAM tRNA:G3:56EFb
3R	27139119	3R_27139119_SNP [dm3] 3R_31313397_SNP [dm6]	C	A	2.892e^-4	0.807	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9339460	3L_9339460_SNP [dm3] 3L_9346360_SNP [dm6]	C	T	2.892e^-4	0.807	DOWNSTREAM PGRP-LC INTRON PGRP-LC
X	2699719	X_2699719_SNP [dm3] X_2805686_SNP [dm6]	C	G	2.892e^-4	0.807	INTRON kirre
2R	18548361	2R_18548361_SNP [dm3] 2R_22660856_SNP [dm6]	A	C	2.899e^-4	0.807	SYNONYMOUS_CODING CG42565 UTR_3_PRIME CG13510 & 1 other DOWNSTREAM CG13511	TF binding site mE1_TFBS_cad
3R	26050011	3R_26050011_SNP [dm3] 3R_30224289_SNP [dm6]	C	G	2.901e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18132205	X_18132205_SNP [dm3] X_18238172_SNP [dm6]	T	A	2.910e^-4	0.807	INTERGENIC	silencer mE1_HDAC_PRE
X	8895713	X_8895713_SNP [dm3] X_9001680_SNP [dm6]	G	A	2.913e^-4	0.807	SYNONYMOUS_CODING rdgA INTRON rdgA & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2L	12596755	2L_12596755_SNP [dm3] 2L_12596755_SNP [dm6]	T	G	2.921e^-4	0.807	INTRON nub
3R	24130199	3R_24130199_SNP [dm3] 3R_28304477_SNP [dm6]	C	T	2.927e^-4	0.807	NON_SYNONYMOUS_CODING CG12516
X	11679846	X_11679846_SNP [dm3] X_11785813_SNP [dm6]	T	C	2.927e^-4	0.807	INTERGENIC
2R	19574126	2R_19574126_SNP [dm3] 2R_23686603_SNP [dm6]	G	A	2.932e^-4	0.807	NON_SYNONYMOUS_CODING St3	TF binding site mE1_TFBS_cad
2L	8945204	2L_8945204_SNP [dm3] 2L_8945204_SNP [dm6]	C	A	2.935e^-4	0.807	INTRON C1GalTA	TF binding site mE1_TFBS_cad
2L	9892495	2L_9892495_SNP [dm3] 2L_9892495_SNP [dm6]	T	C	2.936e^-4	0.807	INTRON mtDNA-helicase
2L	12768084	2L_12768084_SNP [dm3] 2L_12768084_SNP [dm6]	A	G	2.939e^-4	0.807	INTERGENIC
3L	12564316	3L_12564316_SNP [dm3] 3L_12571216_SNP [dm6]	G	A	2.941e^-4	0.807	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	1371373	2R_1371373_SNP [dm3] 2R_5483868_SNP [dm6]	C	T	2.941e^-4	0.807	NON_SYNONYMOUS_CODING CG30440
2R	1366452	2R_1366452_SNP [dm3] 2R_5478947_SNP [dm6]	C	T	2.942e^-4	0.807	INTRON CG30440	transposable element FlyBase
3L	11102734	3L_11102734_SNP [dm3] 3L_11109634_SNP [dm6]	T	A	2.944e^-4	0.807	UPSTREAM CG7638 & 1 other DOWNSTREAM CG12522 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8577191	3L_8577191_SNP [dm3] 3L_8584091_SNP [dm6]	G	A	2.946e^-4	0.807	INTRON CG43078
3L	14344281	3L_14344281_SNP [dm3] 3L_14351181_SNP [dm6]	C	T	2.948e^-4	0.807	INTRON fz	TF binding site mE1_TFBS_HSA
2L	5650217	2L_5650217_SNP [dm3] 2L_5650217_SNP [dm6]	T	C	2.949e^-4	0.807	INTRON CG31646
2L	12718259	2L_12718259_SNP [dm3] 2L_12718259_SNP [dm6]	G	A	2.950e^-4	0.807	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
2L	11875233	2L_11875233_DEL [dm3] 2L_11875233_DEL [dm6]	GGGC	G	2.955e^-4	0.807	UPSTREAM Pde1c INTRON Pde1c
3R	26065679	3R_26065679_SNP [dm3] 3R_30239957_SNP [dm6]	A	T	2.960e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	24816190	3R_24816190_SNP [dm3] 3R_28990468_SNP [dm6]	G	C	2.970e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9210270	3L_9210270_SNP [dm3] 3L_9217170_SNP [dm6]	A	G	2.970e^-4	0.807	INTERGENIC
3R	18054366	3R_18054366_SNP [dm3] 3R_22228644_SNP [dm6]	A	T	2.972e^-4	0.807	INTRON SKIP
3R	26053331	3R_26053331_MNP [dm3] 3R_30227609_MNP [dm6]	TGGC	CACA	2.973e^-4	0.807	INTERGENIC
2R	4218072	2R_4218072_SNP [dm3] 2R_8330567_SNP [dm6]	C	T	2.973e^-4	0.807	INTRON pdm3
2L	9106283	2L_9106283_DEL [dm3] 2L_9106283_DEL [dm6]	CACAG	C	2.977e^-4	0.807	INTERGENIC
2R	17433729	2R_17433729_SNP [dm3] 2R_21546224_SNP [dm6]	C	T	2.979e^-4	0.807	UPSTREAM Egfr INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Trl
2R	19346678	2R_19346678_INS [dm3] 2R_23459155_INS [dm6]	T	TT	2.991e^-4	0.807	UPSTREAM skpF INTRON CG43795
2R	17442555	2R_17442555_SNP [dm3] 2R_21555050_SNP [dm6]	C	A	3.004e^-4	0.807	SPLICE_SITE_REGION Egfr SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_HSA
2L	5531518	2L_5531518_SNP [dm3] 2L_5531518_SNP [dm6]	G	A	3.008e^-4	0.807	SYNONYMOUS_CODING CG7277 DOWNSTREAM CG31915 INTRON Cap-D3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6594093	3L_6594093_SNP [dm3] 3L_6600993_SNP [dm6]	G	C	3.010e^-4	0.807	NON_SYNONYMOUS_CODING ndl	TF binding site mE1_TFBS_sens
2L	7110466	2L_7110466_SNP [dm3] 2L_7110466_SNP [dm6]	T	G	3.012e^-4	0.807	INTRON Pvf3
3R	23448644	3R_23448644_INS [dm3] 3R_27622922_INS [dm6]	T	TT	3.015e^-4	0.807	DOWNSTREAM CG5612 INTRON Tusp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17647628	2R_17647628_SNP [dm3] 2R_21760123_SNP [dm6]	C	A	3.023e^-4	0.807	INTERGENIC
3L	10413482	3L_10413482_SNP [dm3] 3L_10420382_SNP [dm6]	C	T	3.023e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8130033	2R_8130033_SNP [dm3] 2R_12242528_SNP [dm6]	A	G	3.026e^-4	0.807	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	18452094	3R_18452094_SNP [dm3] 3R_22626372_SNP [dm6]	T	A	3.032e^-4	0.807	UTR_5_PRIME loco INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	14928118	2L_14928118_SNP [dm3] 2L_14928118_SNP [dm6]	G	A	3.036e^-4	0.807	SYNONYMOUS_CODING CG3491 INTRON CG42313
3R	23195973	3R_23195973_SNP [dm3] 3R_27370251_SNP [dm6]	T	A	3.046e^-4	0.807	UPSTREAM CR43476 INTRON CG42534	TF binding site mE1_TFBS_chinmo
3L	10850275	3L_10850275_SNP [dm3] 3L_10857175_SNP [dm6]	T	C	3.053e^-4	0.807	UPSTREAM tna INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	13660897	3R_13660897_SNP [dm3] 3R_17835175_SNP [dm6]	A	T	3.056e^-4	0.807	INTRON tinc
2R	1212911	2R_1212911_SNP [dm3] 2R_5325406_SNP [dm6]	A	C	3.060e^-4	0.807	INTRON sxc
3L	9728647	3L_9728647_SNP [dm3] 3L_9735547_SNP [dm6]	T	G	3.066e^-4	0.807	INTRON CG42268
2L	1452260	2L_1452260_SNP [dm3] 2L_1452260_SNP [dm6]	G	A	3.069e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18352450	3L_18352450_SNP [dm3] 3L_18359350_SNP [dm6]	T	A	3.080e^-4	0.807	INTERGENIC
2L	12555343	2L_12555343_SNP [dm3] 2L_12555343_SNP [dm6]	T	C	3.080e^-4	0.807	INTERGENIC
3L	14345763	3L_14345763_SNP [dm3] 3L_14352663_SNP [dm6]	A	T	3.081e^-4	0.807	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25359025	3R_25359025_DEL [dm3] 3R_29533303_DEL [dm6]	AG	A	3.083e^-4	0.807	INTERGENIC
3R	8431661	3R_8431661_SNP [dm3] 3R_12605939_SNP [dm6]	A	T	3.083e^-4	0.807	INTERGENIC
2L	12604159	2L_12604159_SNP [dm3] 2L_12604159_SNP [dm6]	C	T	3.093e^-4	0.807	INTRON nub
2R	13141321	2R_13141321_SNP [dm3] 2R_17253816_SNP [dm6]	T	C	3.100e^-4	0.807	INTRON mbl EXON CR43660
2R	11373190	2R_11373190_SNP [dm3] 2R_15485685_SNP [dm6]	A	T	3.105e^-4	0.807	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18109021	3R_18109021_SNP [dm3] 3R_22283299_SNP [dm6]	T	A	3.106e^-4	0.807	INTRON SKIP
2R	17940849	2R_17940849_SNP [dm3] 2R_22053344_SNP [dm6]	G	A	3.108e^-4	0.807	INTERGENIC
X	2326607	X_2326607_SNP [dm3] X_2432574_SNP [dm6]	A	G	3.114e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	4841545	3L_4841545_SNP [dm3] 3L_4841545_SNP [dm6]	G	A	3.125e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	4841547	3L_4841547_SNP [dm3] 3L_4841547_SNP [dm6]	T	A	3.125e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	11036036	X_11036036_SNP [dm3] X_11142003_SNP [dm6]	C	T	3.128e^-4	0.807	UPSTREAM CG15199 & 1 other DOWNSTREAM CR44054 INTERGENIC
2L	12604157	2L_12604157_SNP [dm3] 2L_12604157_SNP [dm6]	T	C	3.132e^-4	0.807	INTRON nub
2R	16930059	2R_16930059_SNP [dm3] 2R_21042554_SNP [dm6]	T	C	3.135e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26049699	3R_26049699_SNP [dm3] 3R_30223977_SNP [dm6]	G	T	3.136e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	26049700	3R_26049700_SNP [dm3] 3R_30223978_SNP [dm6]	G	A	3.136e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	9950533	2L_9950533_SNP [dm3] 2L_9950533_SNP [dm6]	G	C	3.138e^-4	0.807	UPSTREAM mir-87 INTERGENIC
2L	7281509	2L_7281509_SNP [dm3] 2L_7281509_SNP [dm6]	A	T	3.140e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	24602914	3R_24602914_SNP [dm3] 3R_28777192_SNP [dm6]	T	G	3.143e^-4	0.807	UPSTREAM CR44952 INTERGENIC
X	2402173	X_2402173_SNP [dm3] X_2508140_SNP [dm6]	A	G	3.145e^-4	0.807	INTRON trol
3L	19633165	3L_19633165_SNP [dm3] 3L_19640065_SNP [dm6]	T	G	3.154e^-4	0.807	SYNONYMOUS_CODING CG8786 DOWNSTREAM CG8786
3L	14203907	3L_14203907_SNP [dm3] 3L_14210807_SNP [dm6]	A	G	3.157e^-4	0.807	INTRON nuf
3R	5213275	3R_5213275_SNP [dm3] 3R_9387553_SNP [dm6]	T	C	3.159e^-4	0.807	INTRON FER	TF binding site mE1_TFBS_HSA
2L	5558708	2L_5558708_SNP [dm3] 2L_5558708_SNP [dm6]	T	A	3.169e^-4	0.807	UTR_3_PRIME GluRIIA UPSTREAM GluRIIB
3R	16427951	3R_16427951_SNP [dm3] 3R_20602229_SNP [dm6]	A	T	3.183e^-4	0.807	INTRON bon	transposable element FlyBase
2L	18110638	2L_18110638_SNP [dm3] 2L_18110638_SNP [dm6]	A	G	3.184e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_bcd
2R	2075215	2R_2075215_SNP [dm3] 2R_6187710_SNP [dm6]	T	A	3.192e^-4	0.807	DOWNSTREAM Ptr INTRON Ptr
2R	18094255	2R_18094255_SNP [dm3] 2R_22206750_SNP [dm6]	G	A	3.194e^-4	0.807	SYNONYMOUS_CODING CG3290	TF binding site mE1_TFBS_HSA
2R	16595185	2R_16595185_SNP [dm3] 2R_20707680_SNP [dm6]	G	C	3.198e^-4	0.807	INTRON dpr
2L	6854134	2L_6854134_SNP [dm3] 2L_6854134_SNP [dm6]	G	A	3.198e^-4	0.807	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2062731	X_2062731_SNP [dm3] X_2168698_SNP [dm6]	T	A	3.201e^-4	0.807	INTRON CG3630
X	2326490	X_2326490_SNP [dm3] X_2432457_SNP [dm6]	A	G	3.204e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_sens
2R	18091512	2R_18091512_SNP [dm3] 2R_22204007_SNP [dm6]	A	G	3.206e^-4	0.807	SYNONYMOUS_CODING CG3292 DOWNSTREAM CR45376
3L	12991309	3L_12991309_SNP [dm3] 3L_12998209_SNP [dm6]	C	G	3.208e^-4	0.807	DOWNSTREAM CG11262 INTERGENIC
2R	18093182	2R_18093182_SNP [dm3] 2R_22205677_SNP [dm6]	G	A	3.210e^-4	0.807	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
3R	25261852	3R_25261852_INS [dm3] 3R_29436130_INS [dm6]	T	TAAACTT	3.213e^-4	0.807	INTRON Ptp99A
3R	14355909	3R_14355909_SNP [dm3] 3R_18530187_SNP [dm6]	T	C	3.214e^-4	0.807	INTRON fru
2L	1035584	2L_1035584_SNP [dm3] 2L_1035584_SNP [dm6]	T	G	3.220e^-4	0.807	INTRON IA-2
X	2592936	X_2592936_SNP [dm3] X_2698903_SNP [dm6]	A	G	3.222e^-4	0.807	SYNONYMOUS_CODING CG2662 UPSTREAM CG2658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	20605589	X_20605589_SNP [dm3] X_20734562_SNP [dm6]	G	A	3.229e^-4	0.807	UTR_3_PRIME CG1324 DOWNSTREAM CG1324	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	10201000	X_10201000_DEL [dm3] X_10306967_DEL [dm6]	AA	A	3.235e^-4	0.807	INTRON alpha-Man-I
X	16667437	X_16667437_SNP [dm3] X_16773404_SNP [dm6]	A	T	3.236e^-4	0.807	INTRON if	TF binding site BDTNP1_TFBS_da
3R	27173917	3R_27173917_SNP [dm3] 3R_31348195_SNP [dm6]	G	C	3.245e^-4	0.807	INTRON CG34347	regulatory region REDfly_CRMs
3L	19630147	3L_19630147_DEL [dm3] 3L_19637047_DEL [dm6]	TT	T	3.249e^-4	0.807	DOWNSTREAM CG8786 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	18091509	2R_18091509_SNP [dm3] 2R_22204004_SNP [dm6]	C	G	3.250e^-4	0.807	SYNONYMOUS_CODING CG3292 DOWNSTREAM CR45376
3R	11106819	3R_11106819_SNP [dm3] 3R_15281097_SNP [dm6]	G	A	3.251e^-4	0.807	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	7289527	2L_7289527_SNP [dm3] 2L_7289527_SNP [dm6]	C	G	3.253e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16624660	3L_16624660_INS [dm3] 3L_16631560_INS [dm6]	A	AAA	3.256e^-4	0.807	INTRON Abl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17998719	2R_17998719_SNP [dm3] 2R_22111214_SNP [dm6]	T	A	3.266e^-4	0.807	INTRON Vrp1
2R	14265681	2R_14265681_SNP [dm3] 2R_18378176_SNP [dm6]	G	C	3.270e^-4	0.807	EXON CR42736	TF binding site BDTNP1_TFBS_twi
3L	12930570	3L_12930570_SNP [dm3] 3L_12937470_SNP [dm6]	G	T	3.280e^-4	0.807	INTERGENIC
3L	9342849	3L_9342849_SNP [dm3] 3L_9349749_SNP [dm6]	T	C	3.301e^-4	0.807	NON_SYNONYMOUS_CODING PGRP-LF
3L	9342851	3L_9342851_SNP [dm3] 3L_9349751_SNP [dm6]	C	G	3.301e^-4	0.807	NON_SYNONYMOUS_CODING PGRP-LF
2L	9939897	2L_9939897_SNP [dm3] 2L_9939897_SNP [dm6]	C	T	3.304e^-4	0.807	SYNONYMOUS_CODING CG4619 DOWNSTREAM CG5853	TF binding site mE1_TFBS_sens
2R	13140124	2R_13140124_INS [dm3] 2R_17252619_INS [dm6]	A	AGTTAA	3.324e^-4	0.807	INTRON mbl	TF binding site BDTNP1_TFBS_twi
2L	5558478	2L_5558478_SNP [dm3] 2L_5558478_SNP [dm6]	G	T	3.329e^-4	0.807	SYNONYMOUS_CODING GluRIIA UPSTREAM GluRIIB	TF binding site mE1_TFBS_chinmo
X	8836153	X_8836153_SNP [dm3] X_8942120_SNP [dm6]	G	A	3.332e^-4	0.807	INTRON rdgA
2R	15838896	2R_15838896_SNP [dm3] 2R_19951391_SNP [dm6]	C	T	3.344e^-4	0.807	START_GAINED CG10822 UTR_5_PRIME CG10822
X	15364110	X_15364110_SNP [dm3] X_15470077_SNP [dm6]	A	C	3.348e^-4	0.807	INTRON Grip128	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27136928	3R_27136928_SNP [dm3] 3R_31311206_SNP [dm6]	G	A	3.350e^-4	0.807	UTR_5_PRIME CG34347	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	25238121	3R_25238121_SNP [dm3] 3R_29412399_SNP [dm6]	A	G	3.350e^-4	0.807	INTRON Ptp99A
3R	27072933	3R_27072933_SNP [dm3] 3R_31247211_SNP [dm6]	C	A	3.352e^-4	0.807	INTRON qless
2L	15736135	2L_15736135_SNP [dm3] 2L_15736135_SNP [dm6]	G	T	3.357e^-4	0.807	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8795300	3L_8795300_SNP [dm3] 3L_8802200_SNP [dm6]	T	A	3.369e^-4	0.807	UPSTREAM CG34426 & 1 other INTERGENIC
3L	9697184	3L_9697184_MNP [dm3] 3L_9704084_MNP [dm6]	ACACA	TTTTT	3.375e^-4	0.807	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16637025	2L_16637025_SNP [dm3] 2L_16637025_SNP [dm6]	C	T	3.380e^-4	0.807	INTRON CG42389
2L	16637026	2L_16637026_SNP [dm3] 2L_16637026_SNP [dm6]	T	G	3.380e^-4	0.807	INTRON CG42389
2R	14876111	2R_14876111_SNP [dm3] 2R_18988606_SNP [dm6]	T	G	3.382e^-4	0.807	INTRON tn
X	12362153	X_12362153_SNP [dm3] X_12468120_SNP [dm6]	A	G	3.389e^-4	0.807	INTRON CG42258	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5975141	2L_5975141_SNP [dm3] 2L_5975141_SNP [dm6]	C	T	3.391e^-4	0.807	INTRON chic
3R	6496895	3R_6496895_DEL [dm3] 3R_10671173_DEL [dm6]	ATTATAAAATTCAATTGTA...	A	3.396e^-4	0.807	INTERGENIC
2R	16358826	2R_16358826_INS [dm3] 2R_20471321_INS [dm6]	G	GT	3.400e^-4	0.807	DOWNSTREAM CG12484 INTRON CG12484
3R	7535924	3R_7535924_SNP [dm3] 3R_11710202_SNP [dm6]	C	T	3.405e^-4	0.807	INTERGENIC
3L	10912479	3L_10912479_INS [dm3] 3L_10919379_INS [dm6]	C	CATTCTCCACC...	3.406e^-4	0.807	INTERGENIC
X	5923674	X_5923674_SNP [dm3] X_6029641_SNP [dm6]	C	T	3.411e^-4	0.807	INTERGENIC
3L	5143866	3L_5143866_SNP [dm3] 3L_5150766_SNP [dm6]	G	A	3.414e^-4	0.807	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	18452074	3R_18452074_SNP [dm3] 3R_22626352_SNP [dm6]	G	A	3.414e^-4	0.807	UTR_5_PRIME loco INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	14365356	3R_14365356_SNP [dm3] 3R_18539634_SNP [dm6]	A	G	3.425e^-4	0.807	INTRON fru
3R	13660817	3R_13660817_SNP [dm3] 3R_17835095_SNP [dm6]	A	T	3.426e^-4	0.807	INTRON tinc
2L	7842084	2L_7842084_SNP [dm3] 2L_7842084_SNP [dm6]	G	A	3.432e^-4	0.807	DOWNSTREAM CG14537 INTERGENIC
2R	13270602	2R_13270602_SNP [dm3] 2R_17383097_SNP [dm6]	T	A	3.433e^-4	0.807	INTERGENIC
2L	13875862	2L_13875862_SNP [dm3] 2L_13875862_SNP [dm6]	T	C	3.441e^-4	0.807	INTRON CenG1A
2R	16336777	2R_16336777_DEL [dm3] 2R_20449272_DEL [dm6]	TTCTTATTAT	T	3.441e^-4	0.807	INTRON CG12484	TF binding site mE1_TFBS_inv
2L	4263691	2L_4263691_SNP [dm3] 2L_4263691_SNP [dm6]	T	C	3.442e^-4	0.807	INTERGENIC
X	21457297	X_21457297_SNP [dm3] X_21586270_SNP [dm6]	T	C	3.451e^-4	0.807	INTERGENIC
2L	15533544	2L_15533544_SNP [dm3] 2L_15533544_SNP [dm6]	A	G	3.457e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13336009	2R_13336009_SNP [dm3] 2R_17448504_SNP [dm6]	T	A	3.459e^-4	0.807	DOWNSTREAM mthl3 INTERGENIC
2L	10784019	2L_10784019_SNP [dm3] 2L_10784019_SNP [dm6]	C	A	3.465e^-4	0.807	INTRON CG31869
3L	4841305	3L_4841305_SNP [dm3] 3L_4841305_SNP [dm6]	C	T	3.471e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	18147589	3R_18147589_SNP [dm3] 3R_22321867_SNP [dm6]	T	C	3.473e^-4	0.807	INTRON CG34377
3R	26667352	3R_26667352_SNP [dm3] 3R_30841630_SNP [dm6]	T	A	3.476e^-4	0.807	UTR_3_PRIME CG15544
3L	9696165	3L_9696165_SNP [dm3] 3L_9703065_SNP [dm6]	G	A	3.484e^-4	0.807	SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13660816	3R_13660816_SNP [dm3] 3R_17835094_SNP [dm6]	A	T	3.484e^-4	0.807	INTRON tinc
3R	16503405	3R_16503405_SNP [dm3] 3R_20677683_SNP [dm6]	C	G	3.493e^-4	0.807	UPSTREAM CR43452 & 1 other EXON CR45024
2R	1361073	2R_1361073_SNP [dm3] 2R_5473568_SNP [dm6]	C	T	3.501e^-4	0.807	INTRON CG30440
2L	12252113	2L_12252113_SNP [dm3] 2L_12252113_SNP [dm6]	T	A	3.502e^-4	0.807	INTRON aret	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14612030	3R_14612030_SNP [dm3] 3R_18786308_SNP [dm6]	A	G	3.505e^-4	0.807	INTRON CG7720
3R	25290830	3R_25290830_SNP [dm3] 3R_29465108_SNP [dm6]	G	C	3.515e^-4	0.807	INTRON Ptp99A
X	16881655	X_16881655_DEL [dm3] X_16987622_DEL [dm6]	TTTTACGTT	T	3.515e^-4	0.807	UPSTREAM CG45002 INTRON CG45002
2L	1241437	2L_1241437_SNP [dm3] 2L_1241437_SNP [dm6]	G	A	3.515e^-4	0.807	SYNONYMOUS_CODING CG5397
X	19013178	X_19013178_SNP [dm3] X_19119145_SNP [dm6]	A	T	3.516e^-4	0.807	INTERGENIC
3R	17219151	3R_17219151_SNP [dm3] 3R_21393429_SNP [dm6]	C	T	3.525e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	5922051	X_5922051_SNP [dm3] X_6028018_SNP [dm6]	G	A	3.535e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8983416	2L_8983416_SNP [dm3] 2L_8983416_SNP [dm6]	G	C	3.535e^-4	0.807	INTRON CG13101
X	18467133	X_18467133_INS [dm3] X_18573100_INS [dm6]	G	GTAGTGTATG	3.536e^-4	0.807	DOWNSTREAM Bx INTERGENIC
3L	6759983	3L_6759983_SNP [dm3] 3L_6766883_SNP [dm6]	G	T	3.537e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	6004666	2R_6004666_SNP [dm3] 2R_10117161_SNP [dm6]	T	C	3.538e^-4	0.807	UTR_3_PRIME Pfk UPSTREAM dmpd DOWNSTREAM Pfk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	6058296	2L_6058296_SNP [dm3] 2L_6058296_SNP [dm6]	A	G	3.539e^-4	0.807	INTRON CG13995	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9076892	2L_9076892_SNP [dm3] 2L_9076892_SNP [dm6]	C	A	3.542e^-4	0.807	UPSTREAM CG12439 INTERGENIC
2R	3287944	2R_3287944_SNP [dm3] 2R_7400439_SNP [dm6]	A	T	3.549e^-4	0.807	UPSTREAM CG11112 INTRON Eaf
2R	13674334	2R_13674334_SNP [dm3] 2R_17786829_SNP [dm6]	G	C	3.550e^-4	0.807	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
3L	12689420	3L_12689420_SNP [dm3] 3L_12696320_SNP [dm6]	G	A	3.553e^-4	0.807	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16279252	2L_16279252_SNP [dm3] 2L_16279252_SNP [dm6]	T	A	3.555e^-4	0.807	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	26246903	3R_26246903_SNP [dm3] 3R_30421181_SNP [dm6]	G	A	3.557e^-4	0.807	START_GAINED CG42740 UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16258836	2L_16258836_SNP [dm3] 2L_16258836_SNP [dm6]	G	T	3.560e^-4	0.807	SYNONYMOUS_CODING EndoGI DOWNSTREAM twe	TF binding site mE1_TFBS_sens
3L	8776899	3L_8776899_SNP [dm3] 3L_8783799_SNP [dm6]	G	A	3.562e^-4	0.807	INTRON Fhos	TF binding site mE1_TFBS_cad
3L	12254733	3L_12254733_SNP [dm3] 3L_12261633_SNP [dm6]	C	G	3.568e^-4	0.807	INTRON app
3L	12254736	3L_12254736_SNP [dm3] 3L_12261636_SNP [dm6]	G	T	3.568e^-4	0.807	INTRON app
3L	9666909	3L_9666909_SNP [dm3] 3L_9673809_SNP [dm6]	T	A	3.569e^-4	0.807	INTRON fry
2L	7281505	2L_7281505_SNP [dm3] 2L_7281505_SNP [dm6]	T	A	3.569e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7281591	2L_7281591_SNP [dm3] 2L_7281591_SNP [dm6]	T	A	3.569e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9961500	2R_9961500_SNP [dm3] 2R_14073995_SNP [dm6]	C	T	3.570e^-4	0.807	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	16881770	X_16881770_SNP [dm3] X_16987737_SNP [dm6]	T	A	3.570e^-4	0.807	UPSTREAM CG45002 INTRON CG45002	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17860451	2R_17860451_SNP [dm3] 2R_21972946_SNP [dm6]	A	G	3.572e^-4	0.807	UPSTREAM CG9304 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8348373	2L_8348373_SNP [dm3] 2L_8348373_SNP [dm6]	T	G	3.575e^-4	0.807	INTRON CG7778
3L	10357880	3L_10357880_SNP [dm3] 3L_10364780_SNP [dm6]	G	C	3.577e^-4	0.807	UPSTREAM mir-276a EXON CR44327
3R	17083112	3R_17083112_SNP [dm3] 3R_21257390_SNP [dm6]	C	T	3.577e^-4	0.807	INTRON ETHR
2R	14243182	2R_14243182_SNP [dm3] 2R_18355677_SNP [dm6]	A	G	3.580e^-4	0.807	UTR_5_PRIME sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13335927	2R_13335927_SNP [dm3] 2R_17448422_SNP [dm6]	C	T	3.588e^-4	0.807	UPSTREAM mthl4 DOWNSTREAM mthl3 INTERGENIC
2L	3372628	2L_3372628_SNP [dm3] 2L_3372628_SNP [dm6]	T	G	3.589e^-4	0.807	DOWNSTREAM CG15412 INTRON CG34394	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
X	9408984	X_9408984_SNP [dm3] X_9514951_SNP [dm6]	A	G	3.598e^-4	0.808	INTRON CG32700
X	21003171	X_21003171_SNP [dm3] X_21132144_SNP [dm6]	A	G	3.614e^-4	0.81	UPSTREAM CG34120 INTRON CG34120
X	20607268	X_20607268_SNP [dm3] X_20736241_SNP [dm6]	G	A	3.630e^-4	0.81	UPSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	18080515	2R_18080515_SNP [dm3] 2R_22193010_SNP [dm6]	C	T	3.630e^-4	0.81	INTRON Swim
2L	3112382	2L_3112382_SNP [dm3] 2L_3112382_SNP [dm6]	C	A	3.632e^-4	0.81	UPSTREAM toc INTRON toc
2R	18340733	2R_18340733_SNP [dm3] 2R_22453228_SNP [dm6]	A	G	3.633e^-4	0.81	INTERGENIC
2L	5609677	2L_5609677_SNP [dm3] 2L_5609677_SNP [dm6]	C	T	3.639e^-4	0.81	INTRON CG14010
2R	9977007	2R_9977007_SNP [dm3] 2R_14089502_SNP [dm6]	A	C	3.640e^-4	0.81	UPSTREAM CG42287 INTRON Prosap
X	21003153	X_21003153_SNP [dm3] X_21132126_SNP [dm6]	C	A	3.656e^-4	0.81	UPSTREAM CG34120 INTRON CG34120
2R	1133439	2R_1133439_DEL [dm3] 2R_5245934_DEL [dm6]	TG	T	3.656e^-4	0.81	INTRON Nipped-A	transposable element FlyBase
2R	19001681	2R_19001681_SNP [dm3] 2R_23114158_SNP [dm6]	T	G	3.657e^-4	0.81	INTRON CR44782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12283172	3L_12283172_SNP [dm3] 3L_12290072_SNP [dm6]	A	G	3.666e^-4	0.81	DOWNSTREAM CG4328 EXON CR45658	TF binding site BDTNP1_TFBS_prd
3L	19902358	3L_19902358_SNP [dm3] 3L_19909258_SNP [dm6]	C	A	3.668e^-4	0.81	UTR_5_PRIME Su_Tpl_ UPSTREAM CR43889 INTRON Mi-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10802520	2L_10802520_SNP [dm3] 2L_10802520_SNP [dm6]	G	C	3.674e^-4	0.81	INTRON CR44581
X	2069357	X_2069357_SNP [dm3] X_2175324_SNP [dm6]	G	A	3.675e^-4	0.81	UPSTREAM Cyp4d2 & 1 other DOWNSTREAM CR44690 EXON CR45479
2L	15532470	2L_15532470_SNP [dm3] 2L_15532470_SNP [dm6]	C	T	3.683e^-4	0.81	INTERGENIC
2L	5846236	2L_5846236_SNP [dm3] 2L_5846236_SNP [dm6]	C	T	3.684e^-4	0.81	INTRON TrissinR
2R	14749944	2R_14749944_SNP [dm3] 2R_18862439_SNP [dm6]	G	T	3.685e^-4	0.81	UPSTREAM CG43069 & 1 other INTERGENIC
3L	16627694	3L_16627694_SNP [dm3] 3L_16634594_SNP [dm6]	T	A	3.697e^-4	0.81	INTRON Abl
3L	10269235	3L_10269235_SNP [dm3] 3L_10276135_SNP [dm6]	T	C	3.702e^-4	0.81	INTERGENIC
3R	10899161	3R_10899161_SNP [dm3] 3R_15073439_SNP [dm6]	A	G	3.702e^-4	0.81	INTRON dpr9
X	16881734	X_16881734_SNP [dm3] X_16987701_SNP [dm6]	C	T	3.703e^-4	0.81	UPSTREAM CG45002 INTRON CG45002
2R	15839122	2R_15839122_SNP [dm3] 2R_19951617_SNP [dm6]	G	A	3.704e^-4	0.81	SYNONYMOUS_CODING CG10822
2R	1324561	2R_1324561_SNP [dm3] 2R_5437056_SNP [dm6]	C	T	3.705e^-4	0.81	INTRON laccase2
2R	16828997	2R_16828997_INS [dm3] 2R_20941492_INS [dm6]	C	CGATGTGTCGATGTC...	3.708e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_HSA
X	2775990	X_2775990_SNP [dm3] X_2881957_SNP [dm6]	G	C	3.716e^-4	0.81	DOWNSTREAM CG14418 INTRON kirre
2R	18015034	2R_18015034_SNP [dm3] 2R_22127529_SNP [dm6]	C	T	3.727e^-4	0.811	UPSTREAM NtR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	6854350	2L_6854350_SNP [dm3] 2L_6854350_SNP [dm6]	G	A	3.733e^-4	0.811	SYNONYMOUS_CODING l_2_k09022 DOWNSTREAM Rca1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6360893	2L_6360893_SNP [dm3] 2L_6360893_SNP [dm6]	C	G	3.736e^-4	0.811	UPSTREAM CR44777 EXON CR44778
3R	18590930	3R_18590930_SNP [dm3] 3R_22765208_SNP [dm6]	A	G	3.738e^-4	0.811	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10355939	2L_10355939_SNP [dm3] 2L_10355939_SNP [dm6]	A	T	3.758e^-4	0.811	UPSTREAM CG5045 INTRON CG5367
2R	18984685	2R_18984685_SNP [dm3] 2R_23097162_SNP [dm6]	G	A	3.758e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	11377610	2R_11377610_SNP [dm3] 2R_15490105_SNP [dm6]	A	G	3.760e^-4	0.811	INTRON CG12964
2L	7100657	2L_7100657_SNP [dm3] 2L_7100657_SNP [dm6]	G	T	3.770e^-4	0.811	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3447875	3L_3447875_SNP [dm3] 3L_3447875_SNP [dm6]	T	C	3.775e^-4	0.811	INTRON eIF5B
3R	4899495	3R_4899495_SNP [dm3] 3R_9073773_SNP [dm6]	G	A	3.779e^-4	0.811	INTRON pum
X	10968631	X_10968631_SNP [dm3] X_11074598_SNP [dm6]	G	A	3.780e^-4	0.811	SYNONYMOUS_CODING sev	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	21455188	X_21455188_SNP [dm3] X_21584161_SNP [dm6]	C	A	3.780e^-4	0.811	EXON CR44711
2R	11834110	2R_11834110_SNP [dm3] 2R_15946605_SNP [dm6]	T	C	3.783e^-4	0.811	SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other
2R	8409164	2R_8409164_SNP [dm3] 2R_12521659_SNP [dm6]	G	A	3.783e^-4	0.811	UPSTREAM CG33632 DOWNSTREAM CG8569 INTERGENIC	TF binding site mE1_TFBS_run
2R	20018193	2R_20018193_SNP [dm3] 2R_24130670_SNP [dm6]	C	G	3.787e^-4	0.811	INTRON tamo
3L	9666778	3L_9666778_SNP [dm3] 3L_9673678_SNP [dm6]	A	G	3.788e^-4	0.811	INTRON fry
2R	13929918	2R_13929918_SNP [dm3] 2R_18042413_SNP [dm6]	A	G	3.798e^-4	0.811	UTR_3_PRIME CG5773 DOWNSTREAM CG5773
2L	16636996	2L_16636996_SNP [dm3] 2L_16636996_SNP [dm6]	T	A	3.800e^-4	0.811	INTRON CG42389
3L	16721232	3L_16721232_SNP [dm3] 3L_16728132_SNP [dm6]	A	G	3.802e^-4	0.811	UPSTREAM PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	5743385	2L_5743385_INS [dm3] 2L_5743385_INS [dm6]	T	TTATTCCC	3.804e^-4	0.811	INTRON CG11030
X	12625810	X_12625810_SNP [dm3] X_12731777_SNP [dm6]	A	C	3.810e^-4	0.811	UTR_5_PRIME Smr UPSTREAM CR43963	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6852097	2L_6852097_SNP [dm3] 2L_6852097_SNP [dm6]	A	G	3.829e^-4	0.812	UPSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	12766730	2L_12766730_SNP [dm3] 2L_12766730_SNP [dm6]	G	C	3.829e^-4	0.812	INTERGENIC
X	16801925	X_16801925_SNP [dm3] X_16907892_SNP [dm6]	T	C	3.830e^-4	0.812	INTRON CR44754
2L	1056962	2L_1056962_SNP [dm3] 2L_1056962_SNP [dm6]	G	C	3.843e^-4	0.812	INTRON S	TF binding site BDTNP1_TFBS_da
2R	14749941	2R_14749941_SNP [dm3] 2R_18862436_SNP [dm6]	A	T	3.846e^-4	0.812	UPSTREAM CG43069 & 1 other INTERGENIC
3L	3773772	3L_3773772_SNP [dm3] 3L_3773772_SNP [dm6]	A	G	3.864e^-4	0.812	INTRON CG32264
3L	9340535	3L_9340535_DEL [dm3] 3L_9347435_DEL [dm6]	AATCAATAACAAATATCATA...	A	3.866e^-4	0.812	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2R	14971703	2R_14971703_SNP [dm3] 2R_19084198_SNP [dm6]	A	G	3.872e^-4	0.812	INTRON 5-HT1A
2R	10556334	2R_10556334_SNP [dm3] 2R_14668829_SNP [dm6]	T	A	3.874e^-4	0.812	NON_SYNONYMOUS_CODING CG12866
X	21456582	X_21456582_SNP [dm3] X_21585555_SNP [dm6]	T	C	3.875e^-4	0.812	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
2L	20130472	2L_20130472_SNP [dm3] 2L_20130472_SNP [dm6]	T	C	3.879e^-4	0.812	INTERGENIC
2R	1357501	2R_1357501_SNP [dm3] 2R_5469996_SNP [dm6]	C	A	3.879e^-4	0.812	INTRON CG30440	transposable element FlyBase
3R	7783074	3R_7783074_SNP [dm3] 3R_11957352_SNP [dm6]	A	C	3.887e^-4	0.812	UPSTREAM Hsp70Aa INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	3158641	3L_3158641_SNP [dm3] 3L_3158641_SNP [dm6]	C	T	3.912e^-4	0.812	SYNONYMOUS_CODING NDUFS3 DOWNSTREAM BtbVII	TF binding site mE1_TFBS_sens
2L	1239857	2L_1239857_SNP [dm3] 2L_1239857_SNP [dm6]	A	G	3.919e^-4	0.812	UPSTREAM CG5397 INTERGENIC
2L	1635381	2L_1635381_SNP [dm3] 2L_1635381_SNP [dm6]	G	T	3.920e^-4	0.812	INTERGENIC
X	11656131	X_11656131_SNP [dm3] X_11762098_SNP [dm6]	A	G	3.926e^-4	0.812	INTRON m
2L	7449800	2L_7449800_SNP [dm3] 2L_7449800_SNP [dm6]	A	T	3.926e^-4	0.812	UTR_5_PRIME santa-maria INTRON santa-maria
3L	2545229	3L_2545229_SNP [dm3] 3L_2545229_SNP [dm6]	C	T	3.926e^-4	0.812	INTRON Spn
3R	26191036	3R_26191036_SNP [dm3] 3R_30365314_SNP [dm6]	T	A	3.927e^-4	0.812	UTR_3_PRIME hdc
3R	7514334	3R_7514334_SNP [dm3] 3R_11688612_SNP [dm6]	G	T	3.928e^-4	0.812	NON_SYNONYMOUS_CODING CG6908 UPSTREAM CG6834	TF binding site BDTNP1_TFBS_z
2R	18988057	2R_18988057_SNP [dm3] 2R_23100534_SNP [dm6]	T	C	3.929e^-4	0.812	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15877310	2R_15877310_SNP [dm3] 2R_19989805_SNP [dm6]	C	T	3.932e^-4	0.812	INTERGENIC
3R	27145890	3R_27145890_SNP [dm3] 3R_31320168_SNP [dm6]	C	T	3.933e^-4	0.812	INTRON CG34347
3R	26238262	3R_26238262_SNP [dm3] 3R_30412540_SNP [dm6]	G	A	3.936e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15666232	X_15666232_SNP [dm3] X_15772199_SNP [dm6]	A	C	3.937e^-4	0.812	NON_SYNONYMOUS_CODING CG33172 UPSTREAM CG43672
X	6830752	X_6830752_SNP [dm3] X_6936719_SNP [dm6]	G	A	3.940e^-4	0.812	INTRON CG14431
3R	20443026	3R_20443026_SNP [dm3] 3R_24617304_SNP [dm6]	A	C	3.947e^-4	0.812	SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14210177	2L_14210177_SNP [dm3] 2L_14210177_SNP [dm6]	C	T	3.951e^-4	0.812	INTRON Dyrk2
2R	9052709	2R_9052709_SNP [dm3] 2R_13165204_SNP [dm6]	T	A	3.956e^-4	0.812	INTRON GLaz
X	7077615	X_7077615_DEL [dm3] X_7183582_DEL [dm6]	GA	G	3.960e^-4	0.812	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	6725598	2L_6725598_SNP [dm3] 2L_6725598_SNP [dm6]	G	A	3.961e^-4	0.812	INTRON Liprin-alpha	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl
3R	13020202	3R_13020202_SNP [dm3] 3R_17194480_SNP [dm6]	C	A	3.966e^-4	0.812	INTRON Mur89F
2L	8507580	2L_8507580_SNP [dm3] 2L_8507580_SNP [dm6]	T	A	3.967e^-4	0.812	UPSTREAM Dh31 INTERGENIC
2L	1005836	2L_1005836_SNP [dm3] 2L_1005836_SNP [dm6]	A	T	3.974e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	7586999	2L_7586999_SNP [dm3] 2L_7586999_SNP [dm6]	G	A	3.980e^-4	0.812	INTERGENIC
3R	20459119	3R_20459119_SNP [dm3] 3R_24633397_SNP [dm6]	A	G	3.980e^-4	0.812	INTRON atl	TF binding site mE1_TFBS_chinmo
2R	1367328	2R_1367328_SNP [dm3] 2R_5479823_SNP [dm6]	T	G	3.985e^-4	0.812	INTRON CG30440	transposable element FlyBase
2R	13996450	2R_13996450_SNP [dm3] 2R_18108945_SNP [dm6]	G	A	3.990e^-4	0.812	UPSTREAM CG5756 INTERGENIC
2R	16358808	2R_16358808_SNP [dm3] 2R_20471303_SNP [dm6]	A	C	3.994e^-4	0.812	DOWNSTREAM CG12484 INTRON CG12484
X	6015655	X_6015655_SNP [dm3] X_6121622_SNP [dm6]	G	T	3.999e^-4	0.812	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl
3L	10850733	3L_10850733_SNP [dm3] 3L_10857633_SNP [dm6]	C	T	4.003e^-4	0.812	UPSTREAM tna INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	14085794	2R_14085794_SNP [dm3] 2R_18198289_SNP [dm6]	G	A	4.009e^-4	0.812	INTERGENIC
2L	14206290	2L_14206290_SNP [dm3] 2L_14206290_SNP [dm6]	C	T	4.010e^-4	0.812	INTRON Dyrk2
3L	19921034	3L_19921034_SNP [dm3] 3L_19927934_SNP [dm6]	T	G	4.016e^-4	0.812	NON_SYNONYMOUS_CODING CG8004 UPSTREAM RhoGDI DOWNSTREAM Grasp65	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13041757	2L_13041757_SNP [dm3] 2L_13041757_SNP [dm6]	G	T	4.018e^-4	0.812	INTRON CG9932
2R	577645	2R_577645_SNP [dm3] 2R_4690140_SNP [dm6]	G	T	4.021e^-4	0.812	INTERGENIC	transposable element FlyBase
3L	10604756	3L_10604756_INS [dm3] 3L_10611656_INS [dm6]	T	TTTGA	4.030e^-4	0.812	INTERGENIC
2R	16443782	2R_16443782_SNP [dm3] 2R_20556277_SNP [dm6]	C	T	4.033e^-4	0.812	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24836837	3R_24836837_SNP [dm3] 3R_29011115_SNP [dm6]	A	G	4.043e^-4	0.812	INTRON wat
2L	15015968	2L_15015968_SNP [dm3] 2L_15015968_SNP [dm6]	C	T	4.054e^-4	0.812	UPSTREAM GABA-B-R1 INTERGENIC
2L	3378046	2L_3378046_SNP [dm3] 2L_3378046_SNP [dm6]	A	T	4.062e^-4	0.812	SYNONYMOUS_CODING Ptpa	TF binding site mE1_TFBS_sens
3L	11340924	3L_11340924_SNP [dm3] 3L_11347824_SNP [dm6]	A	C	4.066e^-4	0.812	INTERGENIC
2R	19576709	2R_19576709_SNP [dm3] 2R_23689186_SNP [dm6]	C	G	4.069e^-4	0.812	SPLICE_SITE_REGION Pal2 INTRON Pal2
3L	10903825	3L_10903825_SNP [dm3] 3L_10910725_SNP [dm6]	T	C	4.071e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	3979029	X_3979029_SNP [dm3] X_4084996_SNP [dm6]	G	A	4.071e^-4	0.812	SYNONYMOUS_CODING CG43689
3R	17293551	3R_17293551_SNP [dm3] 3R_21467829_SNP [dm6]	T	G	4.073e^-4	0.812	INTERGENIC
3L	6051114	3L_6051114_SNP [dm3] 3L_6058014_SNP [dm6]	G	A	4.082e^-4	0.812	INTERGENIC
3R	21969275	3R_21969275_INS [dm3] 3R_26143553_INS [dm6]	T	TT	4.083e^-4	0.812	INTERGENIC
2L	924055	2L_924055_SNP [dm3] 2L_924055_SNP [dm6]	G	T	4.086e^-4	0.812	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3L	6617330	3L_6617330_SNP [dm3] 3L_6624230_SNP [dm6]	G	C	4.091e^-4	0.812	UTR_5_PRIME GluRIA	TF binding site mE1_TFBS_Trl
3R	17033987	3R_17033987_SNP [dm3] 3R_21208265_SNP [dm6]	T	C	4.091e^-4	0.812	UPSTREAM SNF4Agamma INTRON SNF4Agamma
2R	13336167	2R_13336167_SNP [dm3] 2R_17448662_SNP [dm6]	C	T	4.095e^-4	0.812	UTR_3_PRIME mthl3
3L	6057932	3L_6057932_SNP [dm3] 3L_6064832_SNP [dm6]	G	A	4.097e^-4	0.812	INTERGENIC
2R	15939781	2R_15939781_SNP [dm3] 2R_20052276_SNP [dm6]	G	A	4.100e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	27123572	3R_27123572_SNP [dm3] 3R_31297850_SNP [dm6]	C	T	4.119e^-4	0.812	INTERGENIC
2L	5743284	2L_5743284_SNP [dm3] 2L_5743284_SNP [dm6]	A	G	4.121e^-4	0.812	INTRON CG11030
2L	12767018	2L_12767018_DEL [dm3] 2L_12767018_DEL [dm6]	TGATAATCAACGG...	T	4.122e^-4	0.812	INTERGENIC
3L	1057784	3L_1057784_SNP [dm3] 3L_1057784_SNP [dm6]	G	A	4.126e^-4	0.812	INTRON bab1
3R	27142486	3R_27142486_SNP [dm3] 3R_31316764_SNP [dm6]	A	G	4.126e^-4	0.812	INTRON CG34347
2R	1297884	2R_1297884_SNP [dm3] 2R_5410379_SNP [dm6]	G	T	4.129e^-4	0.812	INTERGENIC
3L	9850425	3L_9850425_SNP [dm3] 3L_9857325_SNP [dm6]	G	A	4.132e^-4	0.812	DOWNSTREAM CG10809 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27139090	3R_27139090_SNP [dm3] 3R_31313368_SNP [dm6]	A	G	4.134e^-4	0.812	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15532897	2L_15532897_SNP [dm3] 2L_15532897_SNP [dm6]	T	A	4.136e^-4	0.812	INTERGENIC
3L	10845102	3L_10845102_SNP [dm3] 3L_10852002_SNP [dm6]	A	T	4.139e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9351670	3L_9351670_SNP [dm3] 3L_9358570_SNP [dm6]	G	C	4.145e^-4	0.812	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	15839140	2R_15839140_SNP [dm3] 2R_19951635_SNP [dm6]	C	T	4.146e^-4	0.812	SYNONYMOUS_CODING CG10822
2R	8672586	2R_8672586_SNP [dm3] 2R_12785081_SNP [dm6]	G	A	4.155e^-4	0.813	INTRON sca EXON CR45137	regulatory region REDfly_CRMs
2L	12086571	2L_12086571_DEL [dm3] 2L_12086571_DEL [dm6]	AAAGT	A	4.164e^-4	0.813	UPSTREAM CR44593 & 1 other DOWNSTREAM CR44592 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14709133	2R_14709133_SNP [dm3] 2R_18821628_SNP [dm6]	T	C	4.165e^-4	0.813	UTR_3_PRIME Phb2 DOWNSTREAM CG15097 INTRON Phb2	TF binding site mE1_TFBS_cad
2L	10283163	2L_10283163_SNP [dm3] 2L_10283163_SNP [dm6]	T	G	4.178e^-4	0.814	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
3R	23926120	3R_23926120_SNP [dm3] 3R_28100398_SNP [dm6]	G	C	4.179e^-4	0.814	INTERGENIC
2R	17647629	2R_17647629_SNP [dm3] 2R_21760124_SNP [dm6]	T	A	4.185e^-4	0.814	INTERGENIC
3L	3447974	3L_3447974_SNP [dm3] 3L_3447974_SNP [dm6]	T	C	4.208e^-4	0.815	INTRON eIF5B
X	5594925	X_5594925_SNP [dm3] X_5700892_SNP [dm6]	T	A	4.214e^-4	0.815	INTRON CG4096
2L	3999802	2L_3999802_SNP [dm3] 2L_3999802_SNP [dm6]	G	A	4.224e^-4	0.815	UPSTREAM CG43797 INTERGENIC
2R	11370056	2R_11370056_SNP [dm3] 2R_15482551_SNP [dm6]	G	A	4.226e^-4	0.815	UTR_5_PRIME CG8180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19127380	3R_19127380_SNP [dm3] 3R_23301658_SNP [dm6]	C	T	4.228e^-4	0.815	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	12544228	3L_12544228_SNP [dm3] 3L_12551128_SNP [dm6]	G	C	4.230e^-4	0.815	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	17293564	3R_17293564_SNP [dm3] 3R_21467842_SNP [dm6]	C	A	4.230e^-4	0.815	INTERGENIC
3R	17293574	3R_17293574_SNP [dm3] 3R_21467852_SNP [dm6]	A	G	4.230e^-4	0.815	INTERGENIC
3R	17293596	3R_17293596_SNP [dm3] 3R_21467874_SNP [dm6]	T	A	4.230e^-4	0.815	INTERGENIC
2L	17767136	2L_17767136_SNP [dm3] 2L_17767136_SNP [dm6]	C	T	4.234e^-4	0.815	INTRON CadN
2R	19573478	2R_19573478_SNP [dm3] 2R_23685955_SNP [dm6]	C	T	4.244e^-4	0.816	UPSTREAM l_2_efl INTRON St3
2R	18240210	2R_18240210_SNP [dm3] 2R_22352705_SNP [dm6]	G	A	4.246e^-4	0.816	INTRON Liprin-gamma
3R	11578441	3R_11578441_SNP [dm3] 3R_15752719_SNP [dm6]	C	T	4.252e^-4	0.816	INTERGENIC
3R	27138940	3R_27138940_SNP [dm3] 3R_31313218_SNP [dm6]	G	T	4.258e^-4	0.816	INTRON CG34347	TF binding site mE1_TFBS_inv
2R	1191458	2R_1191458_SNP [dm3] 2R_5303953_SNP [dm6]	C	A	4.270e^-4	0.816	INTERGENIC
2L	8982912	2L_8982912_SNP [dm3] 2L_8982912_SNP [dm6]	G	A	4.270e^-4	0.816	INTRON CG13101
3R	22443127	3R_22443127_SNP [dm3] 3R_26617405_SNP [dm6]	C	T	4.270e^-4	0.816	INTERGENIC
2L	5479413	2L_5479413_INS [dm3] 2L_5479413_INS [dm6]	A	AGTCCTATAA	4.276e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_cad
X	15154379	X_15154379_SNP [dm3] X_15260346_SNP [dm6]	G	C	4.277e^-4	0.816	INTERGENIC
2R	4225488	2R_4225488_SNP [dm3] 2R_8337983_SNP [dm6]	A	G	4.280e^-4	0.816	INTRON pdm3
2L	9765911	2L_9765911_SNP [dm3] 2L_9765911_SNP [dm6]	T	C	4.289e^-4	0.816	NON_SYNONYMOUS_CODING ppk18 DOWNSTREAM und
X	4776075	X_4776075_SNP [dm3] X_4882042_SNP [dm6]	G	A	4.291e^-4	0.816	INTRON CG42594
3L	7193322	3L_7193322_SNP [dm3] 3L_7200222_SNP [dm6]	T	G	4.293e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21457138	X_21457138_SNP [dm3] X_21586111_SNP [dm6]	C	T	4.302e^-4	0.817	INTERGENIC
2R	17926823	2R_17926823_SNP [dm3] 2R_22039318_SNP [dm6]	A	G	4.314e^-4	0.818	INTRON CG34370
3L	16813496	3L_16813496_SNP [dm3] 3L_16820396_SNP [dm6]	C	A	4.326e^-4	0.818	DOWNSTREAM nudC INTRON CG13024
X	9569799	X_9569799_SNP [dm3] X_9675766_SNP [dm6]	T	G	4.332e^-4	0.818	INTRON nej	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	5479410	2L_5479410_INS [dm3] 2L_5479410_INS [dm6]	T	TTCC	4.333e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_cad
3R	21980628	3R_21980628_SNP [dm3] 3R_26154906_SNP [dm6]	A	T	4.333e^-4	0.818	INTERGENIC
2R	1220723	2R_1220723_SNP [dm3] 2R_5333218_SNP [dm6]	A	G	4.353e^-4	0.82	INTERGENIC	transposable element FlyBase
X	21457546	X_21457546_SNP [dm3] X_21586519_SNP [dm6]	C	G	4.358e^-4	0.82	INTERGENIC
X	2326700	X_2326700_SNP [dm3] X_2432667_SNP [dm6]	T	C	4.365e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	19216193	3R_19216193_SNP [dm3] 3R_23390471_SNP [dm6]	A	T	4.367e^-4	0.82	EXON CR43387	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15533580	2L_15533580_SNP [dm3] 2L_15533580_SNP [dm6]	A	G	4.368e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25301300	3R_25301300_INS [dm3] 3R_29475578_INS [dm6]	A	ATA	4.370e^-4	0.82	INTRON Ptp99A
X	16881670	X_16881670_SNP [dm3] X_16987637_SNP [dm6]	T	C	4.374e^-4	0.82	UPSTREAM CG45002 INTRON CG45002

By genomic position
Variant impact
Gene name

mn_Week5_Fecundity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results