DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.741e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2429 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	26176018	3R_26176018_SNP [dm3] 3R_30350296_SNP [dm6]	C	A	3.859e^-7	0.659	INTRON hdc
3R	14094242	3R_14094242_SNP [dm3] 3R_18268520_SNP [dm6]	T	C	1.586e^-6	0.659	INTRON CG18599
3L	2545668	3L_2545668_DEL [dm3] 3L_2545668_DEL [dm6]	TAAATTAAAGGCTTTGT...	T	1.696e^-6	0.659	INTRON Spn
2L	14795131	2L_14795131_DEL [dm3] 2L_14795131_DEL [dm6]	CC	C	1.985e^-6	0.659	UTR_3_PRIME CG18420
3R	14094271	3R_14094271_SNP [dm3] 3R_18268549_SNP [dm6]	A	G	2.810e^-6	0.659	INTRON CG18599
3R	26088906	3R_26088906_SNP [dm3] 3R_30263184_SNP [dm6]	C	T	3.594e^-6	0.659	INTERGENIC
2R	3346733	2R_3346733_DEL [dm3] 2R_7459228_DEL [dm6]	TA	T	4.222e^-6	0.659	UPSTREAM Inos DOWNSTREAM CG11141 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10530153	2L_10530153_SNP [dm3] 2L_10530153_SNP [dm6]	T	C	4.583e^-6	0.659	SYNONYMOUS_CODING Lip4
2L	7900509	2L_7900509_SNP [dm3] 2L_7900509_SNP [dm6]	A	C	5.418e^-6	0.659	INTRON Snoo
2L	3378046	2L_3378046_SNP [dm3] 2L_3378046_SNP [dm6]	A	T	5.781e^-6	0.659	SYNONYMOUS_CODING Ptpa	TF binding site mE1_TFBS_sens
X	12584129	X_12584129_SNP [dm3] X_12690096_SNP [dm6]	C	A	6.527e^-6	0.659	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_kni BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9258817	3L_9258817_SNP [dm3] 3L_9265717_SNP [dm6]	A	C	6.784e^-6	0.659	INTRON GluRIB
2L	17775496	2L_17775496_SNP [dm3] 2L_17775496_SNP [dm6]	T	A	7.233e^-6	0.659	INTRON CadN
3R	18636393	3R_18636393_SNP [dm3] 3R_22810671_SNP [dm6]	T	C	8.263e^-6	0.659	INTERGENIC
3R	13242326	3R_13242326_SNP [dm3] 3R_17416604_SNP [dm6]	T	A	9.278e^-6	0.659	UPSTREAM CG33333 DOWNSTREAM CG5866 INTERGENIC
3R	26667352	3R_26667352_SNP [dm3] 3R_30841630_SNP [dm6]	T	A	9.309e^-6	0.659	UTR_3_PRIME CG15544
2L	7994399	2L_7994399_SNP [dm3] 2L_7994399_SNP [dm6]	T	C	9.431e^-6	0.659	UTR_3_PRIME CG7227 UPSTREAM pes & 1 other DOWNSTREAM CG7227	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_Trl
3R	25476842	3R_25476842_SNP [dm3] 3R_29651120_SNP [dm6]	C	T	9.573e^-6	0.659	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
X	10568445	X_10568445_SNP [dm3] X_10674412_SNP [dm6]	A	C	9.660e^-6	0.659	UPSTREAM CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12861426	2R_12861426_SNP [dm3] 2R_16973921_SNP [dm6]	T	C	9.861e^-6	0.659	UPSTREAM Cbp53E INTERGENIC
2L	448813	2L_448813_SNP [dm3] 2L_448813_SNP [dm6]	T	G	1.072e^-5	0.659	UTR_3_PRIME crq DOWNSTREAM ex
3L	18352450	3L_18352450_SNP [dm3] 3L_18359350_SNP [dm6]	T	A	1.083e^-5	0.659	INTERGENIC
X	5872642	X_5872642_SNP [dm3] X_5978609_SNP [dm6]	G	A	1.089e^-5	0.659	INTRON Grip
2R	12074021	2R_12074021_SNP [dm3] 2R_16186516_SNP [dm6]	C	A	1.130e^-5	0.659	UPSTREAM clu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Ubx
2R	9637295	2R_9637295_SNP [dm3] 2R_13749790_SNP [dm6]	G	A	1.154e^-5	0.659	DOWNSTREAM fas INTERGENIC
3L	1081436	3L_1081436_SNP [dm3] 3L_1081436_SNP [dm6]	A	G	1.198e^-5	0.659	INTRON bab1
3R	19649746	3R_19649746_SNP [dm3] 3R_23824024_SNP [dm6]	T	C	1.322e^-5	0.659	INTRON CG34355
2L	7986113	2L_7986113_SNP [dm3] 2L_7986113_SNP [dm6]	T	C	1.419e^-5	0.659	DOWNSTREAM pes INTRON CG7231	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12073056	2R_12073056_SNP [dm3] 2R_16185551_SNP [dm6]	A	G	1.508e^-5	0.659	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	5736658	X_5736658_SNP [dm3] X_5842625_SNP [dm6]	C	T	1.530e^-5	0.659	INTERGENIC
3L	14269828	3L_14269828_SNP [dm3] 3L_14276728_SNP [dm6]	T	C	1.532e^-5	0.659	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	7818857	2L_7818857_SNP [dm3] 2L_7818857_SNP [dm6]	C	G	1.533e^-5	0.659	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4897079	2L_4897079_SNP [dm3] 2L_4897079_SNP [dm6]	A	G	1.533e^-5	0.659	INTRON CG3036
3R	26871778	3R_26871778_SNP [dm3] 3R_31046056_SNP [dm6]	G	A	1.550e^-5	0.659	UPSTREAM CG33920 INTRON CanA1	TF binding site BDTNP1_TFBS_prd
3L	12374733	3L_12374733_SNP [dm3] 3L_12381633_SNP [dm6]	T	G	1.576e^-5	0.659	INTRON Ncc69	TF binding site mE1_TFBS_inv
2L	17778779	2L_17778779_DEL [dm3] 2L_17778779_DEL [dm6]	CGG	C	1.586e^-5	0.659	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
3L	767649	3L_767649_SNP [dm3] 3L_767649_SNP [dm6]	T	C	1.597e^-5	0.659	INTERGENIC
X	18464207	X_18464207_SNP [dm3] X_18570174_SNP [dm6]	A	C	1.654e^-5	0.659	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2L	7900233	2L_7900233_SNP [dm3] 2L_7900233_SNP [dm6]	C	T	1.656e^-5	0.659	INTRON Snoo
X	10625028	X_10625028_INS [dm3] X_10730995_INS [dm6]	T	TC	1.673e^-5	0.659	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	12502809	2L_12502809_SNP [dm3] 2L_12502809_SNP [dm6]	T	G	1.752e^-5	0.659	INTRON bun
3L	4726377	3L_4726377_SNP [dm3] 3L_4726377_SNP [dm6]	T	C	1.766e^-5	0.659	INTRON RhoGEF64C
2L	9286685	2L_9286685_SNP [dm3] 2L_9286685_SNP [dm6]	T	C	1.822e^-5	0.659	INTRON Ggamma30A
2L	7900200	2L_7900200_SNP [dm3] 2L_7900200_SNP [dm6]	T	C	1.827e^-5	0.659	INTRON Snoo
2L	4132014	2L_4132014_SNP [dm3] 2L_4132014_SNP [dm6]	C	T	2.022e^-5	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19573478	2R_19573478_SNP [dm3] 2R_23685955_SNP [dm6]	C	T	2.032e^-5	0.659	UPSTREAM l_2_efl INTRON St3
2R	16443782	2R_16443782_SNP [dm3] 2R_20556277_SNP [dm6]	C	T	2.060e^-5	0.659	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11649398	3L_11649398_SNP [dm3] 3L_11656298_SNP [dm6]	T	C	2.080e^-5	0.659	UPSTREAM mir-274 INTRON CG32085
2R	14994295	2R_14994295_SNP [dm3] 2R_19106790_SNP [dm6]	G	A	2.125e^-5	0.659	INTRON 5-HT1A
2R	12073113	2R_12073113_SNP [dm3] 2R_16185608_SNP [dm6]	C	T	2.170e^-5	0.659	SYNONYMOUS_CODING CG8441 UPSTREAM clu DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9258803	3L_9258803_SNP [dm3] 3L_9265703_SNP [dm6]	G	T	2.255e^-5	0.659	INTRON GluRIB
2L	9888653	2L_9888653_SNP [dm3] 2L_9888653_SNP [dm6]	A	C	2.273e^-5	0.659	INTRON FKBP59	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12588392	2L_12588392_SNP [dm3] 2L_12588392_SNP [dm6]	A	G	2.289e^-5	0.659	INTRON nub
3R	13210214	3R_13210214_SNP [dm3] 3R_17384492_SNP [dm6]	A	T	2.309e^-5	0.659	INTRON Brf & 1 other
3L	12981081	3L_12981081_SNP [dm3] 3L_12987981_SNP [dm6]	T	A	2.313e^-5	0.659	INTERGENIC
2R	12073825	2R_12073825_DEL [dm3] 2R_16186320_DEL [dm6]	CCTCAACGACGC...	A	2.331e^-5	0.659	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7900235	2L_7900235_SNP [dm3] 2L_7900235_SNP [dm6]	C	G	2.334e^-5	0.659	INTRON Snoo
2L	12616488	2L_12616488_SNP [dm3] 2L_12616488_SNP [dm6]	T	C	2.342e^-5	0.659	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	18129037	3R_18129037_SNP [dm3] 3R_22303315_SNP [dm6]	A	G	2.343e^-5	0.659	INTRON CG7084
3L	9258799	3L_9258799_SNP [dm3] 3L_9265699_SNP [dm6]	A	C	2.398e^-5	0.659	INTRON GluRIB
3R	13210218	3R_13210218_DEL [dm3] 3R_17384496_DEL [dm6]	TACGCATCAA	T	2.448e^-5	0.659	INTRON Brf & 1 other
3R	13210266	3R_13210266_SNP [dm3] 3R_17384544_SNP [dm6]	A	T	2.448e^-5	0.659	INTRON Brf & 1 other
X	6484376	X_6484376_SNP [dm3] X_6590343_SNP [dm6]	A	G	2.474e^-5	0.659	SYNONYMOUS_CODING CG17717 UPSTREAM Pat1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7986378	2L_7986378_SNP [dm3] 2L_7986378_SNP [dm6]	C	A	2.483e^-5	0.659	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
3R	19649763	3R_19649763_INS [dm3] 3R_23824041_INS [dm6]	T	TGT	2.483e^-5	0.659	INTRON CG34355
3R	25261801	3R_25261801_SNP [dm3] 3R_29436079_SNP [dm6]	T	A	2.505e^-5	0.659	INTRON Ptp99A
3R	26176121	3R_26176121_SNP [dm3] 3R_30350399_SNP [dm6]	G	C	2.526e^-5	0.659	INTRON hdc
2L	3377824	2L_3377824_SNP [dm3] 2L_3377824_SNP [dm6]	T	C	2.578e^-5	0.659	INTRON Ptpa	TF binding site mE1_TFBS_sens
3R	13210235	3R_13210235_DEL [dm3] 3R_17384513_DEL [dm6]	TCCCTGTAAAA...	T	2.592e^-5	0.659	INTRON Brf & 1 other
3R	13210256	3R_13210256_MNP [dm3] 3R_17384534_MNP [dm6]	CGAC	TTTA	2.592e^-5	0.659	INTRON Brf & 1 other
2R	11817318	2R_11817318_DEL [dm3] 2R_15929813_DEL [dm6]	GA	G	2.612e^-5	0.659	INTRON bdg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13226496	3R_13226496_SNP [dm3] 3R_17400774_SNP [dm6]	A	G	2.651e^-5	0.659	INTRON Sur-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	18474269	3R_18474269_SNP [dm3] 3R_22648547_SNP [dm6]	G	T	2.653e^-5	0.659	INTRON CG45058
3R	19649740	3R_19649740_SNP [dm3] 3R_23824018_SNP [dm6]	T	G	2.655e^-5	0.659	INTRON CG34355
2L	12587759	2L_12587759_SNP [dm3] 2L_12587759_SNP [dm6]	A	T	2.683e^-5	0.659	UTR_5_PRIME nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4132068	2L_4132068_SNP [dm3] 2L_4132068_SNP [dm6]	T	G	2.718e^-5	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	10531508	3R_10531508_SNP [dm3] 3R_14705786_SNP [dm6]	G	A	2.742e^-5	0.659	INTRON kibra
2L	7986468	2L_7986468_SNP [dm3] 2L_7986468_SNP [dm6]	C	T	2.755e^-5	0.659	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
3R	180809	3R_180809_SNP [dm3] 3R_4355087_SNP [dm6]	T	A	2.776e^-5	0.659	INTERGENIC
2R	12073840	2R_12073840_SNP [dm3] 2R_16186335_SNP [dm6]	T	A	2.836e^-5	0.66	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9591743	2R_9591743_SNP [dm3] 2R_13704238_SNP [dm6]	T	C	2.853e^-5	0.66	INTRON fas
2L	13236971	2L_13236971_SNP [dm3] 2L_13236971_SNP [dm6]	G	A	2.884e^-5	0.66	INTRON CG5867
3R	25261852	3R_25261852_INS [dm3] 3R_29436130_INS [dm6]	T	TAAACTT	3.038e^-5	0.674	INTRON Ptp99A
3R	14094198	3R_14094198_SNP [dm3] 3R_18268476_SNP [dm6]	G	A	3.051e^-5	0.674	INTRON CG18599
2L	17778773	2L_17778773_DEL [dm3] 2L_17778773_DEL [dm6]	TAAAA	T	3.059e^-5	0.674	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
2R	19346678	2R_19346678_INS [dm3] 2R_23459155_INS [dm6]	T	TT	3.102e^-5	0.674	UPSTREAM skpF INTRON CG43795
3R	26176100	3R_26176100_SNP [dm3] 3R_30350378_SNP [dm6]	C	A	3.159e^-5	0.674	INTRON hdc
X	10568569	X_10568569_SNP [dm3] X_10674536_SNP [dm6]	G	C	3.195e^-5	0.674	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
3L	7063391	3L_7063391_SNP [dm3] 3L_7070291_SNP [dm6]	G	A	3.198e^-5	0.674	INTRON CG8641
2R	11372415	2R_11372415_INS [dm3] 2R_15484910_INS [dm6]	G	GTCTTCG	3.235e^-5	0.674	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2L	8994078	2L_8994078_SNP [dm3] 2L_8994078_SNP [dm6]	G	A	3.356e^-5	0.685	UTR_3_PRIME alien UPSTREAM CG17906 DOWNSTREAM CG9555 & 1 other
3L	10369405	3L_10369405_SNP [dm3] 3L_10376305_SNP [dm6]	T	A	3.398e^-5	0.685	INTERGENIC
3L	12494005	3L_12494005_SNP [dm3] 3L_12500905_SNP [dm6]	C	T	3.456e^-5	0.685	SYNONYMOUS_CODING CG10638 UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
3L	12374674	3L_12374674_DEL [dm3] 3L_12381574_DEL [dm6]	GAAATTCTTTAACAAGGCGA...	G	3.468e^-5	0.685	INTRON Ncc69	TF binding site mE1_TFBS_inv
X	6119168	X_6119168_SNP [dm3] X_6225135_SNP [dm6]	C	G	3.583e^-5	0.685	UTR_5_PRIME sqh UPSTREAM sqh & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12021871	2R_12021871_SNP [dm3] 2R_16134366_SNP [dm6]	G	A	3.603e^-5	0.685	INTRON spin	TF binding site mE1_TFBS_inv
2L	12702451	2L_12702451_SNP [dm3] 2L_12702451_SNP [dm6]	C	A	3.666e^-5	0.685	SYNONYMOUS_CODING CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	19931882	2R_19931882_SNP [dm3] 2R_24044359_SNP [dm6]	A	T	3.688e^-5	0.685	UTR_3_PRIME IntS1 DOWNSTREAM tsr	TF binding site BDTNP1_TFBS_dl
3L	12335182	3L_12335182_SNP [dm3] 3L_12342082_SNP [dm6]	A	C	3.733e^-5	0.685	INTRON CrzR
2R	12073844	2R_12073844_SNP [dm3] 2R_16186339_SNP [dm6]	A	T	3.758e^-5	0.685	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	6121036	X_6121036_SNP [dm3] X_6227003_SNP [dm6]	C	T	3.759e^-5	0.685	SYNONYMOUS_CODING CG14446	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18550922	2R_18550922_SNP [dm3] 2R_22663417_SNP [dm6]	C	A	3.794e^-5	0.685	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
2L	17954078	2L_17954078_DEL [dm3] 2L_17954078_DEL [dm6]	GATTGCAG	G	3.800e^-5	0.685	INTERGENIC	TF binding site mE1_TFBS_Kr
X	10751602	X_10751602_SNP [dm3] X_10857569_SNP [dm6]	G	A	3.844e^-5	0.685	UPSTREAM CG2186 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	19633508	3L_19633508_DEL [dm3] 3L_19640408_DEL [dm6]	GTTTG	G	3.989e^-5	0.685	UTR_3_PRIME CG8786 INTRON CG8786
2L	11862105	2L_11862105_SNP [dm3] 2L_11862105_SNP [dm6]	C	A	4.057e^-5	0.685	INTRON Pde1c
X	12151795	X_12151795_SNP [dm3] X_12257762_SNP [dm6]	A	C	4.092e^-5	0.685	INTRON Ten-a
X	6119481	X_6119481_SNP [dm3] X_6225448_SNP [dm6]	T	G	4.096e^-5	0.685	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
3R	17293564	3R_17293564_SNP [dm3] 3R_21467842_SNP [dm6]	C	A	4.109e^-5	0.685	INTERGENIC
3R	17293574	3R_17293574_SNP [dm3] 3R_21467852_SNP [dm6]	A	G	4.109e^-5	0.685	INTERGENIC
3R	17293596	3R_17293596_SNP [dm3] 3R_21467874_SNP [dm6]	T	A	4.109e^-5	0.685	INTERGENIC
2L	448809	2L_448809_DEL [dm3] 2L_448809_DEL [dm6]	AA	A	4.139e^-5	0.685	UTR_3_PRIME crq DOWNSTREAM ex
2R	11373269	2R_11373269_SNP [dm3] 2R_15485764_SNP [dm6]	A	C	4.188e^-5	0.685	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11372410	2R_11372410_SNP [dm3] 2R_15484905_SNP [dm6]	G	T	4.191e^-5	0.685	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
3R	17293551	3R_17293551_SNP [dm3] 3R_21467829_SNP [dm6]	T	G	4.339e^-5	0.685	INTERGENIC
2R	18914580	2R_18914580_SNP [dm3] 2R_23027057_SNP [dm6]	A	C	4.348e^-5	0.685	INTRON twi & 1 other
3R	10534077	3R_10534077_SNP [dm3] 3R_14708355_SNP [dm6]	G	A	4.372e^-5	0.685	INTRON kibra
2L	12588348	2L_12588348_SNP [dm3] 2L_12588348_SNP [dm6]	A	T	4.420e^-5	0.685	INTRON nub
2R	9679611	2R_9679611_DEL [dm3] 2R_13792106_DEL [dm6]	CC	C	4.459e^-5	0.685	EXON CR43811
2R	11967906	2R_11967906_SNP [dm3] 2R_16080401_SNP [dm6]	T	A	4.529e^-5	0.685	DOWNSTREAM Dg INTERGENIC
X	10567637	X_10567637_SNP [dm3] X_10673604_SNP [dm6]	G	A	4.530e^-5	0.685	UPSTREAM CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
3L	5521724	3L_5521724_SNP [dm3] 3L_5528624_SNP [dm6]	G	A	4.533e^-5	0.685	INTRON Lkr
2L	5021566	2L_5021566_INS [dm3] 2L_5021566_INS [dm6]	T	TGTAT	4.535e^-5	0.685	INTRON vkg
3R	17293603	3R_17293603_SNP [dm3] 3R_21467881_SNP [dm6]	C	T	4.569e^-5	0.685	INTERGENIC
3L	8977593	3L_8977593_SNP [dm3] 3L_8984493_SNP [dm6]	G	T	4.648e^-5	0.685	SYNONYMOUS_CODING Galk	TF binding site mE1_TFBS_chinmo
2L	7776180	2L_7776180_SNP [dm3] 2L_7776180_SNP [dm6]	G	A	4.673e^-5	0.685	SYNONYMOUS_CODING CG7179	TF binding site mE1_TFBS_cad
3L	12374579	3L_12374579_SNP [dm3] 3L_12381479_SNP [dm6]	G	A	4.694e^-5	0.685	INTRON Ncc69	TF binding site mE1_TFBS_inv
3L	5997712	3L_5997712_SNP [dm3] 3L_6004612_SNP [dm6]	C	T	4.697e^-5	0.685	INTRON PVRAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1969770	2L_1969770_DEL [dm3] 2L_1969770_DEL [dm6]	AC	A	4.739e^-5	0.685	INTRON erm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11169441	2L_11169441_SNP [dm3] 2L_11169441_SNP [dm6]	C	T	4.750e^-5	0.685	INTRON Ca-beta	TF binding site mE1_TFBS_Trl
X	12160591	X_12160591_SNP [dm3] X_12266558_SNP [dm6]	C	G	4.848e^-5	0.687	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16618743	2R_16618743_SNP [dm3] 2R_20731238_SNP [dm6]	C	T	4.849e^-5	0.687	UPSTREAM CG13442 INTRON dpr
X	3483222	X_3483222_SNP [dm3] X_3589189_SNP [dm6]	T	A	4.950e^-5	0.687	INTRON AstA-R1
2R	17868698	2R_17868698_SNP [dm3] 2R_21981193_SNP [dm6]	T	C	4.981e^-5	0.687	DOWNSTREAM Gr58a INTERGENIC
2R	12073891	2R_12073891_SNP [dm3] 2R_16186386_SNP [dm6]	T	A	5.014e^-5	0.687	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12089161	2R_12089161_SNP [dm3] 2R_16201656_SNP [dm6]	C	T	5.028e^-5	0.687	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo
X	10628405	X_10628405_SNP [dm3] X_10734372_SNP [dm6]	G	C	5.042e^-5	0.687	INTRON CG32676
X	10892563	X_10892563_SNP [dm3] X_10998530_SNP [dm6]	G	A	5.220e^-5	0.687	INTRON CG42339
3R	27135735	3R_27135735_SNP [dm3] 3R_31310013_SNP [dm6]	A	C	5.237e^-5	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8994080	2L_8994080_SNP [dm3] 2L_8994080_SNP [dm6]	T	C	5.249e^-5	0.687	UTR_3_PRIME alien UPSTREAM CG17906 DOWNSTREAM CG9555 & 1 other
3R	18125709	3R_18125709_SNP [dm3] 3R_22299987_SNP [dm6]	A	G	5.288e^-5	0.687	INTRON CG7084
3R	3006133	3R_3006133_SNP [dm3] 3R_7180411_SNP [dm6]	G	A	5.289e^-5	0.687	SYNONYMOUS_CODING sas INTRON sas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16273922	2R_16273922_SNP [dm3] 2R_20386417_SNP [dm6]	T	A	5.343e^-5	0.687	INTERGENIC
3R	14092878	3R_14092878_SNP [dm3] 3R_18267156_SNP [dm6]	G	A	5.382e^-5	0.687	UPSTREAM CG18599 INTERGENIC
2R	11373190	2R_11373190_SNP [dm3] 2R_15485685_SNP [dm6]	A	T	5.411e^-5	0.687	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12072897	2R_12072897_SNP [dm3] 2R_16185392_SNP [dm6]	C	T	5.411e^-5	0.687	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	5736761	X_5736761_SNP [dm3] X_5842728_SNP [dm6]	T	C	5.423e^-5	0.687	INTERGENIC
3L	9258826	3L_9258826_SNP [dm3] 3L_9265726_SNP [dm6]	G	T	5.465e^-5	0.687	INTRON GluRIB
3L	16036130	3L_16036130_SNP [dm3] 3L_16043030_SNP [dm6]	C	T	5.601e^-5	0.687	UTR_5_PRIME th UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv
3L	17046469	3L_17046469_SNP [dm3] 3L_17053369_SNP [dm6]	G	T	5.646e^-5	0.687	INTRON rogdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25261849	3R_25261849_SNP [dm3] 3R_29436127_SNP [dm6]	T	C	5.654e^-5	0.687	INTRON Ptp99A
2L	12588032	2L_12588032_SNP [dm3] 2L_12588032_SNP [dm6]	C	T	5.678e^-5	0.687	START_GAINED nub UTR_5_PRIME nub	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
3L	5997888	3L_5997888_SNP [dm3] 3L_6004788_SNP [dm6]	C	T	5.690e^-5	0.687	INTRON PVRAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10351661	3L_10351661_SNP [dm3] 3L_10358561_SNP [dm6]	A	G	5.710e^-5	0.687	INTRON CR44327
2R	16273933	2R_16273933_SNP [dm3] 2R_20386428_SNP [dm6]	T	G	5.747e^-5	0.687	INTERGENIC
2R	16274016	2R_16274016_SNP [dm3] 2R_20386511_SNP [dm6]	T	C	5.776e^-5	0.687	INTERGENIC
3L	12374566	3L_12374566_SNP [dm3] 3L_12381466_SNP [dm6]	G	T	5.799e^-5	0.687	INTRON Ncc69	TF binding site mE1_TFBS_inv
2R	15270784	2R_15270784_SNP [dm3] 2R_19383279_SNP [dm6]	A	C	5.817e^-5	0.687	SYNONYMOUS_CODING CG10073
2R	11373104	2R_11373104_SNP [dm3] 2R_15485599_SNP [dm6]	T	A	5.929e^-5	0.687	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	9258825	3L_9258825_SNP [dm3] 3L_9265725_SNP [dm6]	C	A	5.949e^-5	0.687	INTRON GluRIB
2R	11382815	2R_11382815_SNP [dm3] 2R_15495310_SNP [dm6]	G	A	5.966e^-5	0.687	INTRON CG12964
3R	13210232	3R_13210232_SNP [dm3] 3R_17384510_SNP [dm6]	A	C	6.086e^-5	0.687	INTRON Brf & 1 other
3R	13210262	3R_13210262_SNP [dm3] 3R_17384540_SNP [dm6]	A	T	6.093e^-5	0.687	INTRON Brf & 1 other
3L	7748848	3L_7748848_SNP [dm3] 3L_7755748_SNP [dm6]	G	A	6.104e^-5	0.687	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
2R	19573358	2R_19573358_SNP [dm3] 2R_23685835_SNP [dm6]	T	A	6.127e^-5	0.687	UPSTREAM l_2_efl INTRON St3
3R	14093822	3R_14093822_SNP [dm3] 3R_18268100_SNP [dm6]	C	A	6.239e^-5	0.687	INTRON CG18599	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	11347614	2R_11347614_SNP [dm3] 2R_15460109_SNP [dm6]	A	T	6.305e^-5	0.687	INTRON CG43729
2R	16273927	2R_16273927_SNP [dm3] 2R_20386422_SNP [dm6]	T	A	6.315e^-5	0.687	INTERGENIC
3R	17901666	3R_17901666_SNP [dm3] 3R_22075944_SNP [dm6]	A	C	6.316e^-5	0.687	INTRON how
2R	16273939	2R_16273939_SNP [dm3] 2R_20386434_SNP [dm6]	A	G	6.338e^-5	0.687	INTERGENIC
2R	16273942	2R_16273942_SNP [dm3] 2R_20386437_SNP [dm6]	T	A	6.338e^-5	0.687	INTERGENIC
2L	12229044	2L_12229044_SNP [dm3] 2L_12229044_SNP [dm6]	A	G	6.355e^-5	0.687	INTRON aret
3L	8616926	3L_8616926_SNP [dm3] 3L_8623826_SNP [dm6]	G	A	6.377e^-5	0.687	UTR_5_PRIME GAPsec UPSTREAM Zasp66
2L	3820711	2L_3820711_SNP [dm3] 2L_3820711_SNP [dm6]	A	G	6.426e^-5	0.687	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	1669959	3L_1669959_SNP [dm3] 3L_1669959_SNP [dm6]	C	T	6.456e^-5	0.687	SYNONYMOUS_CODING RabX5 DOWNSTREAM CG13930	TF binding site mE1_TFBS_chinmo
2L	2254377	2L_2254377_SNP [dm3] 2L_2254377_SNP [dm6]	C	T	6.457e^-5	0.687	NON_SYNONYMOUS_CODING Send1 DOWNSTREAM CG17234
3R	26176045	3R_26176045_SNP [dm3] 3R_30350323_SNP [dm6]	C	T	6.527e^-5	0.687	INTRON hdc
2R	17929699	2R_17929699_SNP [dm3] 2R_22042194_SNP [dm6]	A	G	6.545e^-5	0.687	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	17778667	2L_17778667_SNP [dm3] 2L_17778667_SNP [dm6]	G	T	6.568e^-5	0.687	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26760217	3R_26760217_DEL [dm3] 3R_30934495_DEL [dm6]	GTGTCAAATGAATTTCAATG...	T	6.743e^-5	0.687	DOWNSTREAM CG15549 INTERGENIC
2R	11373035	2R_11373035_SNP [dm3] 2R_15485530_SNP [dm6]	G	T	6.760e^-5	0.687	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	12073845	2R_12073845_DEL [dm3] 2R_16186340_DEL [dm6]	CGC	C	6.827e^-5	0.687	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16338592	3L_16338592_SNP [dm3] 3L_16345492_SNP [dm6]	C	T	6.845e^-5	0.687	UPSTREAM CG33257 DOWNSTREAM CG4998 INTERGENIC
2R	12073843	2R_12073843_SNP [dm3] 2R_16186338_SNP [dm6]	G	T	7.037e^-5	0.687	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19768156	3R_19768156_SNP [dm3] 3R_23942434_SNP [dm6]	T	G	7.044e^-5	0.687	INTRON Gdh	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8471644	3R_8471644_SNP [dm3] 3R_12645922_SNP [dm6]	A	G	7.105e^-5	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	7281732	2L_7281732_SNP [dm3] 2L_7281732_SNP [dm6]	C	T	7.114e^-5	0.687	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	18051596	3L_18051596_SNP [dm3] 3L_18058496_SNP [dm6]	T	C	7.161e^-5	0.687	SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	16273951	2R_16273951_SNP [dm3] 2R_20386446_SNP [dm6]	T	A	7.235e^-5	0.687	INTERGENIC
2R	16273953	2R_16273953_SNP [dm3] 2R_20386448_SNP [dm6]	T	A	7.235e^-5	0.687	INTERGENIC
2L	9888636	2L_9888636_SNP [dm3] 2L_9888636_SNP [dm6]	C	A	7.239e^-5	0.687	INTRON FKBP59	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10751624	X_10751624_SNP [dm3] X_10857591_SNP [dm6]	G	A	7.245e^-5	0.687	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	13215511	3R_13215511_SNP [dm3] 3R_17389789_SNP [dm6]	T	A	7.293e^-5	0.687	UTR_3_PRIME lute INTRON Brf
2R	16643013	2R_16643013_SNP [dm3] 2R_20755508_SNP [dm6]	A	T	7.313e^-5	0.687	INTERGENIC
2L	6287335	2L_6287335_SNP [dm3] 2L_6287335_SNP [dm6]	G	T	7.332e^-5	0.687	INTRON Ddr	TF binding site BDTNP1_TFBS_twi
3L	19097279	3L_19097279_INS [dm3] 3L_19104179_INS [dm6]	G	GATACG	7.333e^-5	0.687	INTERGENIC
2L	7466034	2L_7466034_DEL [dm3] 2L_7466034_DEL [dm6]	TA	T	7.341e^-5	0.687	UPSTREAM CG6055 INTERGENIC
2L	7818981	2L_7818981_SNP [dm3] 2L_7818981_SNP [dm6]	C	T	7.372e^-5	0.687	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13210276	3R_13210276_SNP [dm3] 3R_17384554_SNP [dm6]	A	T	7.452e^-5	0.687	INTRON Brf & 1 other
3R	11269036	3R_11269036_SNP [dm3] 3R_15443314_SNP [dm6]	T	A	7.458e^-5	0.687	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad
2R	16317394	2R_16317394_SNP [dm3] 2R_20429889_SNP [dm6]	A	G	7.458e^-5	0.687	INTRON CG12484
3L	9439333	3L_9439333_SNP [dm3] 3L_9446233_SNP [dm6]	G	C	7.466e^-5	0.687	NON_SYNONYMOUS_CODING CG33926 UPSTREAM CG3529	TF binding site mE1_TFBS_cad
2R	9474315	2R_9474315_SNP [dm3] 2R_13586810_SNP [dm6]	A	G	7.479e^-5	0.687	INTRON CG6191 & 1 other
3R	26667039	3R_26667039_SNP [dm3] 3R_30841317_SNP [dm6]	G	T	7.512e^-5	0.687	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
2R	11373265	2R_11373265_SNP [dm3] 2R_15485760_SNP [dm6]	G	T	7.571e^-5	0.687	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18129004	3R_18129004_SNP [dm3] 3R_22303282_SNP [dm6]	G	A	7.577e^-5	0.687	INTRON CG7084
3L	5513044	3L_5513044_SNP [dm3] 3L_5519944_SNP [dm6]	C	T	7.602e^-5	0.687	INTRON Lkr
X	19889703	X_19889703_SNP [dm3] X_19995670_SNP [dm6]	G	C	7.627e^-5	0.687	INTERGENIC
2L	7779028	2L_7779028_SNP [dm3] 2L_7779028_SNP [dm6]	C	G	7.651e^-5	0.687	UPSTREAM CG7179 INTERGENIC
X	6119175	X_6119175_SNP [dm3] X_6225142_SNP [dm6]	T	C	7.717e^-5	0.687	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1670261	3L_1670261_SNP [dm3] 3L_1670261_SNP [dm6]	G	T	7.723e^-5	0.687	UPSTREAM RabX5 DOWNSTREAM CG13930 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1057784	3L_1057784_SNP [dm3] 3L_1057784_SNP [dm6]	G	A	7.815e^-5	0.69	INTRON bab1
3L	12493961	3L_12493961_SNP [dm3] 3L_12500861_SNP [dm6]	G	A	7.855e^-5	0.69	UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638	TF binding site mE1_TFBS_sens
3R	2845681	3R_2845681_SNP [dm3] 3R_7019959_SNP [dm6]	G	C	7.897e^-5	0.69	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12073017	2R_12073017_SNP [dm3] 2R_16185512_SNP [dm6]	T	C	8.020e^-5	0.69	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	6805744	3L_6805744_SNP [dm3] 3L_6812644_SNP [dm6]	C	T	8.041e^-5	0.69	INTERGENIC
2L	6941442	2L_6941442_SNP [dm3] 2L_6941442_SNP [dm6]	T	C	8.229e^-5	0.69	INTRON CG18304	TF binding site BDTNP1_TFBS_dl
3R	8768435	3R_8768435_SNP [dm3] 3R_12942713_SNP [dm6]	A	G	8.243e^-5	0.69	INTERGENIC
3R	25314098	3R_25314098_SNP [dm3] 3R_29488376_SNP [dm6]	C	G	8.269e^-5	0.69	SYNONYMOUS_CODING CG2321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12288574	X_12288574_SNP [dm3] X_12394541_SNP [dm6]	C	T	8.291e^-5	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3007748	3R_3007748_SNP [dm3] 3R_7182026_SNP [dm6]	A	C	8.296e^-5	0.69	SYNONYMOUS_CODING sas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10529930	2L_10529930_SNP [dm3] 2L_10529930_SNP [dm6]	T	A	8.303e^-5	0.69	INTRON Lip4
X	6119463	X_6119463_INS [dm3] X_6225430_INS [dm6]	T	TA	8.310e^-5	0.69	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
2L	9532222	2L_9532222_DEL [dm3] 2L_9532222_DEL [dm6]	TACAAATGGAAGCCT...	T	8.310e^-5	0.69	INTRON Oatp30B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16273934	2R_16273934_SNP [dm3] 2R_20386429_SNP [dm6]	T	A	8.310e^-5	0.69	INTERGENIC
2L	7462077	2L_7462077_SNP [dm3] 2L_7462077_SNP [dm6]	T	C	8.327e^-5	0.69	SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12097475	2L_12097475_SNP [dm3] 2L_12097475_SNP [dm6]	T	G	8.373e^-5	0.69	NON_SYNONYMOUS_CODING Mt2 UPSTREAM CG6712 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	2686887	2L_2686887_SNP [dm3] 2L_2686887_SNP [dm6]	A	G	8.384e^-5	0.69	INTRON CG31690
2R	14195793	2R_14195793_SNP [dm3] 2R_18308288_SNP [dm6]	A	G	8.431e^-5	0.691	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2L	12718175	2L_12718175_SNP [dm3] 2L_12718175_SNP [dm6]	T	A	8.538e^-5	0.696	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
3R	13210268	3R_13210268_INS [dm3] 3R_17384546_INS [dm6]	T	TC	8.587e^-5	0.697	INTRON Brf & 1 other
2R	16273957	2R_16273957_SNP [dm3] 2R_20386452_SNP [dm6]	C	T	8.680e^-5	0.702	INTERGENIC
3L	8617199	3L_8617199_SNP [dm3] 3L_8624099_SNP [dm6]	G	T	8.793e^-5	0.703	UPSTREAM Zasp66 & 1 other INTERGENIC
2R	16326263	2R_16326263_SNP [dm3] 2R_20438758_SNP [dm6]	G	A	8.830e^-5	0.703	INTRON CG12484
3R	27165482	3R_27165482_SNP [dm3] 3R_31339760_SNP [dm6]	G	A	8.844e^-5	0.703	INTRON CG34347
2L	1645735	2L_1645735_SNP [dm3] 2L_1645735_SNP [dm6]	G	T	8.849e^-5	0.703	INTERGENIC
2L	2806636	2L_2806636_SNP [dm3] 2L_2806636_SNP [dm6]	C	A	8.982e^-5	0.703	INTRON daw
X	3141187	X_3141187_SNP [dm3] X_3247154_SNP [dm6]	T	A	9.040e^-5	0.703	INTRON dnc
3L	12283294	3L_12283294_SNP [dm3] 3L_12290194_SNP [dm6]	G	A	9.069e^-5	0.703	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	11372488	2R_11372488_SNP [dm3] 2R_15484983_SNP [dm6]	G	T	9.075e^-5	0.703	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	6888627	3L_6888627_SNP [dm3] 3L_6895527_SNP [dm6]	G	T	9.093e^-5	0.703	INTERGENIC
X	10751574	X_10751574_SNP [dm3] X_10857541_SNP [dm6]	T	C	9.154e^-5	0.703	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	16273977	2R_16273977_SNP [dm3] 2R_20386472_SNP [dm6]	A	G	9.155e^-5	0.703	INTERGENIC
2R	10338317	2R_10338317_SNP [dm3] 2R_14450812_SNP [dm6]	T	C	9.189e^-5	0.703	INTRON Oaz	TF binding site mE1_TFBS_cad
X	6120045	X_6120045_SNP [dm3] X_6226012_SNP [dm6]	T	A	9.208e^-5	0.703	UTR_5_PRIME CG14446 UPSTREAM sqh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	13210275	3R_13210275_SNP [dm3] 3R_17384553_SNP [dm6]	T	C	9.217e^-5	0.703	INTRON Brf & 1 other
2L	935319	2L_935319_DEL [dm3] 2L_935319_DEL [dm6]	CGATTTCATTTCTCTAGA...	C	9.268e^-5	0.703	INTRON CG4341	TF binding site mE1_TFBS_Trl
2R	9577168	2R_9577168_SNP [dm3] 2R_13689663_SNP [dm6]	T	G	9.298e^-5	0.703	INTRON fas
3L	5522223	3L_5522223_SNP [dm3] 3L_5529123_SNP [dm6]	C	T	9.335e^-5	0.703	UTR_5_PRIME Lkr
3R	17901668	3R_17901668_SNP [dm3] 3R_22075946_SNP [dm6]	A	T	9.580e^-5	0.704	INTRON how
2R	19573384	2R_19573384_SNP [dm3] 2R_23685861_SNP [dm6]	T	A	9.623e^-5	0.704	UPSTREAM l_2_efl INTRON St3
2R	11373253	2R_11373253_INS [dm3] 2R_15485748_INS [dm6]	A	AAAAAATTAAAATTAAAAAA...	9.624e^-5	0.704	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12848597	2R_12848597_SNP [dm3] 2R_16961092_SNP [dm6]	C	T	9.624e^-5	0.704	UPSTREAM CG9010 INTERGENIC
3R	18474292	3R_18474292_SNP [dm3] 3R_22648570_SNP [dm6]	C	G	9.629e^-5	0.704	INTRON CG45058
2R	12100255	2R_12100255_SNP [dm3] 2R_16212750_SNP [dm6]	T	C	9.631e^-5	0.704	INTRON mrj
3R	8705383	3R_8705383_SNP [dm3] 3R_12879661_SNP [dm6]	A	G	9.660e^-5	0.704	INTERGENIC
2R	11372482	2R_11372482_SNP [dm3] 2R_15484977_SNP [dm6]	G	T	9.675e^-5	0.704	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	2024419	3R_2024419_SNP [dm3] 3R_6198697_SNP [dm6]	C	T	9.691e^-5	0.704	UPSTREAM Osi24 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15065684	3R_15065684_SNP [dm3] 3R_19239962_SNP [dm6]	A	G	9.897e^-5	0.711	INTRON unc79
2R	3346715	2R_3346715_SNP [dm3] 2R_7459210_SNP [dm6]	G	C	9.898e^-5	0.711	UPSTREAM Inos DOWNSTREAM CG11141 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11008654	3R_11008654_SNP [dm3] 3R_15182932_SNP [dm6]	G	T	9.904e^-5	0.711	INTRON Gyc88E
3L	12615005	3L_12615005_DEL [dm3] 3L_12621905_DEL [dm6]	AAA	C	1.004e^-4	0.711	DOWNSTREAM caup INTERGENIC
2L	13236966	2L_13236966_SNP [dm3] 2L_13236966_SNP [dm6]	A	G	1.007e^-4	0.711	INTRON CG5867
3R	17246901	3R_17246901_SNP [dm3] 3R_21421179_SNP [dm6]	C	T	1.008e^-4	0.711	INTRON lbl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16362144	2R_16362144_SNP [dm3] 2R_20474639_SNP [dm6]	C	T	1.015e^-4	0.711	INTRON CG12484
3R	12762406	3R_12762406_SNP [dm3] 3R_16936684_SNP [dm6]	A	C	1.016e^-4	0.711	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16273974	2R_16273974_SNP [dm3] 2R_20386469_SNP [dm6]	T	A	1.020e^-4	0.711	INTERGENIC
2L	17778655	2L_17778655_SNP [dm3] 2L_17778655_SNP [dm6]	C	G	1.027e^-4	0.711	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13283483	3R_13283483_SNP [dm3] 3R_17457761_SNP [dm6]	C	T	1.029e^-4	0.711	UPSTREAM CG14330 INTERGENIC
2L	7779082	2L_7779082_SNP [dm3] 2L_7779082_SNP [dm6]	T	A	1.041e^-4	0.711	INTERGENIC
2R	17256595	2R_17256595_SNP [dm3] 2R_21369090_SNP [dm6]	C	T	1.043e^-4	0.711	INTRON cv-2	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1354359	2R_1354359_SNP [dm3] 2R_5466854_SNP [dm6]	C	A	1.043e^-4	0.711	INTERGENIC	transposable element FlyBase
3L	12374656	3L_12374656_SNP [dm3] 3L_12381556_SNP [dm6]	C	T	1.047e^-4	0.711	INTRON Ncc69	TF binding site mE1_TFBS_inv
3L	8617299	3L_8617299_SNP [dm3] 3L_8624199_SNP [dm6]	C	T	1.049e^-4	0.711	UPSTREAM Zasp66 & 1 other INTERGENIC
2L	9915819	2L_9915819_SNP [dm3] 2L_9915819_SNP [dm6]	G	T	1.050e^-4	0.711	DOWNSTREAM Srp54 INTRON yip2
3R	13977759	3R_13977759_SNP [dm3] 3R_18152037_SNP [dm6]	T	C	1.056e^-4	0.711	UPSTREAM CG14316 INTERGENIC
2R	9675072	2R_9675072_SNP [dm3] 2R_13787567_SNP [dm6]	A	C	1.061e^-4	0.711	UTR_3_PRIME Cpr50Ca
2R	14676098	2R_14676098_SNP [dm3] 2R_18788593_SNP [dm6]	C	T	1.067e^-4	0.711	INTRON CG15080
3R	15112481	3R_15112481_SNP [dm3] 3R_19286759_SNP [dm6]	T	A	1.072e^-4	0.711	INTERGENIC
X	12288572	X_12288572_SNP [dm3] X_12394539_SNP [dm6]	G	A	1.092e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8768453	3R_8768453_SNP [dm3] 3R_12942731_SNP [dm6]	G	A	1.092e^-4	0.711	INTERGENIC
3L	15640878	3L_15640878_SNP [dm3] 3L_15647778_SNP [dm6]	C	T	1.094e^-4	0.711	UPSTREAM CG43083 & 1 other INTERGENIC
2R	11385223	2R_11385223_DEL [dm3] 2R_15497718_DEL [dm6]	ATAC	T	1.099e^-4	0.711	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	11385228	2R_11385228_SNP [dm3] 2R_15497723_SNP [dm6]	T	G	1.099e^-4	0.711	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	18129074	3R_18129074_SNP [dm3] 3R_22303352_SNP [dm6]	C	T	1.101e^-4	0.711	INTRON CG7084
2L	9079049	2L_9079049_SNP [dm3] 2L_9079049_SNP [dm6]	G	C	1.106e^-4	0.711	INTERGENIC
2L	7900169	2L_7900169_SNP [dm3] 2L_7900169_SNP [dm6]	C	T	1.106e^-4	0.711	INTRON Snoo
3R	8705486	3R_8705486_SNP [dm3] 3R_12879764_SNP [dm6]	A	T	1.109e^-4	0.711	INTERGENIC
3R	20801971	3R_20801971_SNP [dm3] 3R_24976249_SNP [dm6]	G	C	1.117e^-4	0.711	INTERGENIC
3R	23513090	3R_23513090_SNP [dm3] 3R_27687368_SNP [dm6]	A	G	1.126e^-4	0.711	NON_SYNONYMOUS_CODING CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11401908	2R_11401908_SNP [dm3] 2R_15514403_SNP [dm6]	C	A	1.127e^-4	0.711	SYNONYMOUS_CODING GalNAc-T1
3L	17172010	3L_17172010_SNP [dm3] 3L_17178910_SNP [dm6]	G	A	1.128e^-4	0.711	INTRON Rbp6
3L	18840243	3L_18840243_SNP [dm3] 3L_18847143_SNP [dm6]	G	C	1.128e^-4	0.711	UPSTREAM Indy INTERGENIC
3L	11051101	3L_11051101_SNP [dm3] 3L_11058001_SNP [dm6]	A	T	1.129e^-4	0.711	INTRON CG7888	TF binding site mE1_TFBS_cad
2L	9362484	2L_9362484_SNP [dm3] 2L_9362484_SNP [dm6]	G	T	1.132e^-4	0.711	INTERGENIC
3R	22443127	3R_22443127_SNP [dm3] 3R_26617405_SNP [dm6]	C	T	1.134e^-4	0.711	INTERGENIC
2R	18909663	2R_18909663_SNP [dm3] 2R_23022140_SNP [dm6]	T	C	1.134e^-4	0.711	INTRON twi & 1 other
3R	15203838	3R_15203838_INS [dm3] 3R_19378116_INS [dm6]	T	TCTTT	1.135e^-4	0.711	UPSTREAM CG31245 INTRON Ino80	TF binding site mE1_TFBS_sens
2L	13237073	2L_13237073_SNP [dm3] 2L_13237073_SNP [dm6]	G	T	1.136e^-4	0.711	INTRON CG5867
3L	3347295	3L_3347295_SNP [dm3] 3L_3347295_SNP [dm6]	C	T	1.137e^-4	0.711	INTRON kst
2R	15155037	2R_15155037_SNP [dm3] 2R_19267532_SNP [dm6]	G	A	1.143e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	11854017	X_11854017_SNP [dm3] X_11959984_SNP [dm6]	A	G	1.145e^-4	0.711	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8617308	3L_8617308_INS [dm3] 3L_8624208_INS [dm6]	A	AAGGTAATTTGTTGTTA...	1.154e^-4	0.714	UPSTREAM Zasp66 & 1 other INTERGENIC
2R	12212863	2R_12212863_SNP [dm3] 2R_16325358_SNP [dm6]	C	T	1.157e^-4	0.714	UTR_3_PRIME Vha44 DOWNSTREAM CG4282 & 1 other
3L	8617249	3L_8617249_SNP [dm3] 3L_8624149_SNP [dm6]	A	T	1.165e^-4	0.716	UPSTREAM Zasp66 & 1 other INTERGENIC
3R	19127380	3R_19127380_SNP [dm3] 3R_23301658_SNP [dm6]	C	T	1.178e^-4	0.716	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	15322549	3R_15322549_SNP [dm3] 3R_19496827_SNP [dm6]	A	T	1.188e^-4	0.716	INTRON Dys
3R	8558650	3R_8558650_DEL [dm3] 3R_12732928_DEL [dm6]	TTCTATTTATTTCTATT...	T	1.190e^-4	0.716	INTERGENIC
3L	19590381	3L_19590381_SNP [dm3] 3L_19597281_SNP [dm6]	T	A	1.190e^-4	0.716	SYNONYMOUS_CODING ash1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17778625	2L_17778625_MNP [dm3] 2L_17778625_MNP [dm6]	GTT	TCG	1.196e^-4	0.716	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17778656	2L_17778656_DEL [dm3] 2L_17778656_DEL [dm6]	GATAT	G	1.199e^-4	0.716	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	14446948	3R_14446948_SNP [dm3] 3R_18621226_SNP [dm6]	A	G	1.202e^-4	0.716	UPSTREAM CG14304 INTRON qin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8806725	3L_8806725_SNP [dm3] 3L_8813625_SNP [dm6]	G	A	1.202e^-4	0.716	INTERGENIC
3R	15757621	3R_15757621_SNP [dm3] 3R_19931899_SNP [dm6]	A	T	1.209e^-4	0.716	UTR_3_PRIME mira DOWNSTREAM mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3141181	X_3141181_SNP [dm3] X_3247148_SNP [dm6]	C	A	1.214e^-4	0.716	INTRON dnc
3R	15356379	3R_15356379_SNP [dm3] 3R_19530657_SNP [dm6]	T	C	1.214e^-4	0.716	INTRON Dys	TF binding site BDTNP1_TFBS_dl
X	6119230	X_6119230_SNP [dm3] X_6225197_SNP [dm6]	G	A	1.214e^-4	0.716	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4265038	2L_4265038_SNP [dm3] 2L_4265038_SNP [dm6]	A	T	1.215e^-4	0.716	INTERGENIC
2L	5021559	2L_5021559_SNP [dm3] 2L_5021559_SNP [dm6]	C	G	1.219e^-4	0.716	INTRON vkg
3R	11207423	3R_11207423_SNP [dm3] 3R_15381701_SNP [dm6]	G	C	1.236e^-4	0.716	SYNONYMOUS_CODING Rbp UTR_3_PRIME h-cup
3L	12374596	3L_12374596_SNP [dm3] 3L_12381496_SNP [dm6]	C	A	1.239e^-4	0.716	INTRON Ncc69	TF binding site mE1_TFBS_inv
3R	17695276	3R_17695276_SNP [dm3] 3R_21869554_SNP [dm6]	C	T	1.240e^-4	0.716	UPSTREAM CG31174 DOWNSTREAM Cby INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4897394	2L_4897394_SNP [dm3] 2L_4897394_SNP [dm6]	T	C	1.250e^-4	0.716	INTRON CG3036	TF binding site mE1_TFBS_sens
2R	17927480	2R_17927480_SNP [dm3] 2R_22039975_SNP [dm6]	T	A	1.251e^-4	0.716	UPSTREAM CG34370 INTERGENIC
2L	18013560	2L_18013560_SNP [dm3] 2L_18013560_SNP [dm6]	G	A	1.253e^-4	0.716	INTRON rdo	regulatory region REDfly_CRMs
3L	10245843	3L_10245843_SNP [dm3] 3L_10252743_SNP [dm6]	T	A	1.253e^-4	0.716	INTERGENIC
X	6451624	X_6451624_SNP [dm3] X_6557591_SNP [dm6]	C	A	1.262e^-4	0.716	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	3707204	3L_3707204_SNP [dm3] 3L_3707204_SNP [dm6]	C	T	1.271e^-4	0.716	INTERGENIC
2L	13626629	2L_13626629_SNP [dm3] 2L_13626629_SNP [dm6]	C	A	1.273e^-4	0.716	INTRON kuz
X	12675995	X_12675995_SNP [dm3] X_12781962_SNP [dm6]	C	A	1.277e^-4	0.716	INTRON CG32647
3L	18034877	3L_18034877_INS [dm3] 3L_18041777_INS [dm6]	C	CTT	1.278e^-4	0.716	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B	TF binding site mE1_TFBS_zfh1
2R	12073089	2R_12073089_SNP [dm3] 2R_16185584_SNP [dm6]	C	T	1.281e^-4	0.716	SYNONYMOUS_CODING CG8441 UPSTREAM clu DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	1194748	3L_1194748_SNP [dm3] 3L_1194748_SNP [dm6]	T	A	1.283e^-4	0.716	UTR_3_PRIME LysX
2L	7427930	2L_7427930_SNP [dm3] 2L_7427930_SNP [dm6]	A	T	1.290e^-4	0.716	UTR_5_PRIME CG5261 INTRON CG5261
2R	18227883	2R_18227883_SNP [dm3] 2R_22340378_SNP [dm6]	G	T	1.295e^-4	0.716	INTRON Liprin-gamma	TF binding site mE1_TFBS_chinmo
2L	18013559	2L_18013559_SNP [dm3] 2L_18013559_SNP [dm6]	A	G	1.300e^-4	0.716	INTRON rdo	regulatory region REDfly_CRMs
2R	9668131	2R_9668131_SNP [dm3] 2R_13780626_SNP [dm6]	G	T	1.308e^-4	0.716	UPSTREAM S-Lap7 INTRON Cpr50Ca
2L	15309762	2L_15309762_SNP [dm3] 2L_15309762_SNP [dm6]	C	G	1.311e^-4	0.716	INTERGENIC
2R	17291668	2R_17291668_SNP [dm3] 2R_21404163_SNP [dm6]	C	G	1.317e^-4	0.716	INTRON Sdc
2R	11373312	2R_11373312_SNP [dm3] 2R_15485807_SNP [dm6]	T	A	1.323e^-4	0.716	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11373318	2R_11373318_MNP [dm3] 2R_15485813_MNP [dm6]	GTGT	TAAG	1.323e^-4	0.716	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7267154	2L_7267154_INS [dm3] 2L_7267154_INS [dm6]	T	TT	1.338e^-4	0.716	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2312254	3L_2312254_SNP [dm3] 3L_2312254_SNP [dm6]	G	T	1.341e^-4	0.716	INTERGENIC
2R	15978605	2R_15978605_SNP [dm3] 2R_20091100_SNP [dm6]	A	G	1.345e^-4	0.716	EXON CR44633	TF binding site mE1_TFBS_cad
2R	11163175	2R_11163175_SNP [dm3] 2R_15275670_SNP [dm6]	A	G	1.351e^-4	0.716	INTRON Trpm
X	5204026	X_5204026_SNP [dm3] X_5309993_SNP [dm6]	A	T	1.352e^-4	0.716	DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl
2L	9230337	2L_9230337_SNP [dm3] 2L_9230337_SNP [dm6]	C	A	1.355e^-4	0.716	INTRON tai	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8488468	3R_8488468_SNP [dm3] 3R_12662746_SNP [dm6]	T	G	1.356e^-4	0.716	UPSTREAM CG14395 & 1 other INTERGENIC
2L	5681957	2L_5681957_SNP [dm3] 2L_5681957_SNP [dm6]	C	T	1.359e^-4	0.716	INTERGENIC
3L	18840873	3L_18840873_SNP [dm3] 3L_18847773_SNP [dm6]	A	C	1.359e^-4	0.716	INTERGENIC
3L	7748843	3L_7748843_SNP [dm3] 3L_7755743_SNP [dm6]	G	A	1.362e^-4	0.716	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
3L	12374615	3L_12374615_SNP [dm3] 3L_12381515_SNP [dm6]	A	G	1.371e^-4	0.716	INTRON Ncc69	TF binding site mE1_TFBS_inv
3R	21995433	3R_21995433_SNP [dm3] 3R_26169711_SNP [dm6]	T	A	1.371e^-4	0.716	INTERGENIC
X	3483341	X_3483341_DEL [dm3] X_3589308_DEL [dm6]	AACCAAA	A	1.383e^-4	0.716	INTRON AstA-R1
2L	9362482	2L_9362482_INS [dm3] 2L_9362482_INS [dm6]	A	ACAC	1.385e^-4	0.716	INTERGENIC
3R	18636407	3R_18636407_SNP [dm3] 3R_22810685_SNP [dm6]	T	C	1.386e^-4	0.716	INTERGENIC
2L	3377729	2L_3377729_SNP [dm3] 2L_3377729_SNP [dm6]	C	A	1.391e^-4	0.716	SYNONYMOUS_CODING Ptpa UPSTREAM CG9662	TF binding site mE1_TFBS_sens
2R	9961346	2R_9961346_SNP [dm3] 2R_14073841_SNP [dm6]	C	A	1.391e^-4	0.716	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	17929804	2R_17929804_SNP [dm3] 2R_22042299_SNP [dm6]	A	G	1.400e^-4	0.716	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna
X	14016170	X_14016170_SNP [dm3] X_14122137_SNP [dm6]	T	G	1.402e^-4	0.716	INTERGENIC
2L	5499989	2L_5499989_SNP [dm3] 2L_5499989_SNP [dm6]	G	T	1.404e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15169590	X_15169590_INS [dm3] X_15275557_INS [dm6]	A	AAATTAA	1.407e^-4	0.716	INTERGENIC
2R	11372533	2R_11372533_SNP [dm3] 2R_15485028_SNP [dm6]	C	A	1.407e^-4	0.716	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	11852819	X_11852819_SNP [dm3] X_11958786_SNP [dm6]	A	T	1.411e^-4	0.716	INTRON cac
3L	11649339	3L_11649339_SNP [dm3] 3L_11656239_SNP [dm6]	A	T	1.411e^-4	0.716	UPSTREAM mir-274 INTRON CG32085
2R	9557991	2R_9557991_SNP [dm3] 2R_13670486_SNP [dm6]	T	G	1.412e^-4	0.716	NON_SYNONYMOUS_CODING CG18368 INTRON fas
3R	27141006	3R_27141006_SNP [dm3] 3R_31315284_SNP [dm6]	T	C	1.413e^-4	0.716	INTRON CG34347	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13236929	2L_13236929_SNP [dm3] 2L_13236929_SNP [dm6]	A	G	1.413e^-4	0.716	INTRON CG5867
3R	13210250	3R_13210250_SNP [dm3] 3R_17384528_SNP [dm6]	G	T	1.416e^-4	0.716	INTRON Brf & 1 other
2R	1616957	2R_1616957_SNP [dm3] 2R_5729452_SNP [dm6]	A	T	1.416e^-4	0.716	INTERGENIC
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	1.419e^-4	0.716	INTRON Cad87A
3R	25668873	3R_25668873_SNP [dm3] 3R_29843151_SNP [dm6]	T	C	1.420e^-4	0.716	INTRON Cad99C
2L	17778723	2L_17778723_INS [dm3] 2L_17778723_INS [dm6]	A	ATTAATAATTATAATTATAT...	1.427e^-4	0.718	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
2L	9078985	2L_9078985_SNP [dm3] 2L_9078985_SNP [dm6]	A	G	1.438e^-4	0.72	DOWNSTREAM CG12439 INTERGENIC
2R	1819486	2R_1819486_SNP [dm3] 2R_5931981_SNP [dm6]	T	C	1.443e^-4	0.72	DOWNSTREAM CG43366 INTERGENIC	transposable element FlyBase
2L	5980285	2L_5980285_SNP [dm3] 2L_5980285_SNP [dm6]	G	C	1.447e^-4	0.72	UTR_5_PRIME chic UPSTREAM chic INTRON chic	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9200038	2L_9200038_SNP [dm3] 2L_9200038_SNP [dm6]	C	T	1.451e^-4	0.72	INTRON tai
2L	13041757	2L_13041757_SNP [dm3] 2L_13041757_SNP [dm6]	G	T	1.452e^-4	0.72	INTRON CG9932
X	14088553	X_14088553_SNP [dm3] X_14194520_SNP [dm6]	G	A	1.461e^-4	0.723	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo
2R	17826489	2R_17826489_SNP [dm3] 2R_21938984_SNP [dm6]	T	C	1.483e^-4	0.726	INTRON Fili
2L	13404092	2L_13404092_SNP [dm3] 2L_13404092_SNP [dm6]	A	G	1.484e^-4	0.726	INTRON CG7110
2L	17778638	2L_17778638_SNP [dm3] 2L_17778638_SNP [dm6]	A	C	1.486e^-4	0.726	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5198411	3L_5198411_SNP [dm3] 3L_5205311_SNP [dm6]	T	C	1.492e^-4	0.726	INTRON shep
2L	7900660	2L_7900660_SNP [dm3] 2L_7900660_SNP [dm6]	T	A	1.495e^-4	0.726	INTRON Snoo
2R	12861254	2R_12861254_SNP [dm3] 2R_16973749_SNP [dm6]	C	T	1.499e^-4	0.726	UPSTREAM Cbp53E INTERGENIC
2R	12640402	2R_12640402_SNP [dm3] 2R_16752897_SNP [dm6]	C	T	1.504e^-4	0.726	UTR_3_PRIME unc-104
3R	27267286	3R_27267286_SNP [dm3] 3R_31441564_SNP [dm6]	G	A	1.507e^-4	0.726	INTRON Gprk2
3L	8614326	3L_8614326_SNP [dm3] 3L_8621226_SNP [dm6]	C	T	1.507e^-4	0.726	DOWNSTREAM GAPsec INTRON S-Lap2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14137801	X_14137801_DEL [dm3] X_14243768_DEL [dm6]	TT	T	1.513e^-4	0.726	UTR_5_PRIME CG32599 UPSTREAM mRNA-cap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5980307	2L_5980307_SNP [dm3] 2L_5980307_SNP [dm6]	G	C	1.527e^-4	0.726	START_GAINED chic UTR_5_PRIME chic UPSTREAM chic INTRON chic	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10627570	X_10627570_SNP [dm3] X_10733537_SNP [dm6]	G	A	1.528e^-4	0.726	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19573464	2R_19573464_SNP [dm3] 2R_23685941_SNP [dm6]	T	A	1.539e^-4	0.726	UPSTREAM l_2_efl INTRON St3
X	6121354	X_6121354_SNP [dm3] X_6227321_SNP [dm6]	C	G	1.552e^-4	0.726	SYNONYMOUS_CODING CG14446	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	11392662	2R_11392662_SNP [dm3] 2R_15505157_SNP [dm6]	T	C	1.553e^-4	0.726	SYNONYMOUS_CODING Ir52c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18128426	3R_18128426_SNP [dm3] 3R_22302704_SNP [dm6]	G	A	1.556e^-4	0.726	INTRON CG7084	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7267135	2L_7267135_SNP [dm3] 2L_7267135_SNP [dm6]	G	A	1.557e^-4	0.726	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8437287	3R_8437287_INS [dm3] 3R_12611565_INS [dm6]	C	CGGC	1.557e^-4	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	2375229	X_2375229_SNP [dm3] X_2481196_SNP [dm6]	T	C	1.564e^-4	0.726	SYNONYMOUS_CODING trol
3L	8617181	3L_8617181_SNP [dm3] 3L_8624081_SNP [dm6]	C	A	1.567e^-4	0.726	UPSTREAM Zasp66 & 1 other INTERGENIC
3L	19018051	3L_19018051_INS [dm3] 3L_19024951_INS [dm6]	A	AA	1.568e^-4	0.726	INTRON nkd
2L	14453855	2L_14453855_SNP [dm3] 2L_14453855_SNP [dm6]	A	T	1.569e^-4	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13137386	2R_13137386_SNP [dm3] 2R_17249881_SNP [dm6]	G	C	1.569e^-4	0.726	INTRON mbl
2L	4824651	2L_4824651_SNP [dm3] 2L_4824651_SNP [dm6]	A	T	1.571e^-4	0.726	INTRON CG15628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	666923	3R_666923_SNP [dm3] 3R_4841201_SNP [dm6]	A	G	1.576e^-4	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14345445	3R_14345445_SNP [dm3] 3R_18519723_SNP [dm6]	T	A	1.586e^-4	0.726	INTRON fru
2R	8114508	2R_8114508_SNP [dm3] 2R_12227003_SNP [dm6]	C	T	1.588e^-4	0.726	UPSTREAM CG8854 INTRON CG8854
3L	7266474	3L_7266474_SNP [dm3] 3L_7273374_SNP [dm6]	G	A	1.589e^-4	0.726	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
3R	26869106	3R_26869106_SNP [dm3] 3R_31043384_SNP [dm6]	C	T	1.597e^-4	0.726	SPLICE_SITE_REGION CanA1 INTRON CanA1
2L	11299632	2L_11299632_SNP [dm3] 2L_11299632_SNP [dm6]	G	T	1.599e^-4	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11374077	2R_11374077_SNP [dm3] 2R_15486572_SNP [dm6]	G	C	1.599e^-4	0.726	NON_SYNONYMOUS_CODING CG12964	TF binding site mE1_TFBS_chinmo
2L	2433134	2L_2433134_SNP [dm3] 2L_2433134_SNP [dm6]	A	T	1.601e^-4	0.726	INTRON dpp
2R	14795233	2R_14795233_SNP [dm3] 2R_18907728_SNP [dm6]	T	C	1.604e^-4	0.726	INTRON sano	TF binding site mE1_TFBS_cad
3R	14092972	3R_14092972_SNP [dm3] 3R_18267250_SNP [dm6]	T	C	1.607e^-4	0.726	UPSTREAM CG18599 INTERGENIC
2L	8984096	2L_8984096_SNP [dm3] 2L_8984096_SNP [dm6]	A	G	1.612e^-4	0.726	INTRON CG13101
2R	11373292	2R_11373292_SNP [dm3] 2R_15485787_SNP [dm6]	A	C	1.616e^-4	0.726	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	10000232	X_10000232_INS [dm3] X_10106199_INS [dm6]	C	CTC	1.618e^-4	0.726	INTRON RhoU	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12374717	3L_12374717_SNP [dm3] 3L_12381617_SNP [dm6]	A	T	1.620e^-4	0.726	INTRON Ncc69	TF binding site mE1_TFBS_inv
3L	9363973	3L_9363973_SNP [dm3] 3L_9370873_SNP [dm6]	A	C	1.624e^-4	0.726	DOWNSTREAM CG4452 & 1 other INTRON Fdxh
3L	2545488	3L_2545488_SNP [dm3] 3L_2545488_SNP [dm6]	A	G	1.626e^-4	0.726	INTRON Spn
2R	17302589	2R_17302589_SNP [dm3] 2R_21415084_SNP [dm6]	G	C	1.636e^-4	0.726	INTRON Sdc	TF binding site mE1_TFBS_inv
2L	14846044	2L_14846044_SNP [dm3] 2L_14846044_SNP [dm6]	G	T	1.638e^-4	0.726	SYNONYMOUS_CODING CG15279
2L	14304576	2L_14304576_SNP [dm3] 2L_14304576_SNP [dm6]	G	A	1.638e^-4	0.726	INTRON wb	TF binding site mE1_TFBS_inv
2L	13972972	2L_13972972_SNP [dm3] 2L_13972972_SNP [dm6]	C	G	1.639e^-4	0.726	UPSTREAM He DOWNSTREAM NimB5 & 1 other INTERGENIC
2L	4130325	2L_4130325_SNP [dm3] 2L_4130325_SNP [dm6]	G	C	1.645e^-4	0.726	INTERGENIC
3L	12283242	3L_12283242_SNP [dm3] 3L_12290142_SNP [dm6]	T	G	1.653e^-4	0.726	DOWNSTREAM CG4328 EXON CR45658	TF binding site BDTNP1_TFBS_prd
2L	4995630	2L_4995630_DEL [dm3] 2L_4995630_DEL [dm6]	GTTTGAGTG	G	1.659e^-4	0.726	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8142576	3L_8142576_SNP [dm3] 3L_8149476_SNP [dm6]	T	C	1.660e^-4	0.726	INTRON CG13676
2L	11170134	2L_11170134_SNP [dm3] 2L_11170134_SNP [dm6]	T	C	1.661e^-4	0.726	INTRON Ca-beta
2R	15513919	2R_15513919_SNP [dm3] 2R_19626414_SNP [dm6]	A	T	1.661e^-4	0.726	INTRON sm
2R	12072954	2R_12072954_SNP [dm3] 2R_16185449_SNP [dm6]	T	C	1.669e^-4	0.727	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7900597	2L_7900597_SNP [dm3] 2L_7900597_SNP [dm6]	C	A	1.674e^-4	0.727	INTRON Snoo
2R	15155122	2R_15155122_SNP [dm3] 2R_19267617_SNP [dm6]	A	G	1.674e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	6119484	X_6119484_SNP [dm3] X_6225451_SNP [dm6]	A	T	1.678e^-4	0.727	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
2L	1969760	2L_1969760_SNP [dm3] 2L_1969760_SNP [dm6]	T	C	1.686e^-4	0.727	INTRON erm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12374767	3L_12374767_SNP [dm3] 3L_12381667_SNP [dm6]	T	C	1.701e^-4	0.727	INTRON Ncc69	TF binding site mE1_TFBS_inv
2R	12072916	2R_12072916_SNP [dm3] 2R_16185411_SNP [dm6]	T	C	1.705e^-4	0.727	NON_SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	11385969	2R_11385969_SNP [dm3] 2R_15498464_SNP [dm6]	T	C	1.705e^-4	0.727	INTERGENIC
3R	7877976	3R_7877976_SNP [dm3] 3R_12052254_SNP [dm6]	A	C	1.708e^-4	0.727	INTERGENIC
X	7362250	X_7362250_DEL [dm3] X_7468217_DEL [dm6]	AAATATTGATA...	A	1.716e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	142490	3R_142490_SNP [dm3] 3R_4316768_SNP [dm6]	C	T	1.719e^-4	0.727	SYNONYMOUS_CODING Syt14
3L	7933525	3L_7933525_SNP [dm3] 3L_7940425_SNP [dm6]	T	A	1.722e^-4	0.727	INTERGENIC
2L	13236930	2L_13236930_SNP [dm3] 2L_13236930_SNP [dm6]	A	G	1.722e^-4	0.727	INTRON CG5867
2R	2821813	2R_2821813_SNP [dm3] 2R_6934308_SNP [dm6]	C	T	1.725e^-4	0.727	INTRON mim	TF binding site BDTNP1_TFBS_prd
2L	5685161	2L_5685161_SNP [dm3] 2L_5685161_SNP [dm6]	A	T	1.725e^-4	0.727	INTERGENIC
3L	19568413	3L_19568413_SNP [dm3] 3L_19575313_SNP [dm6]	T	A	1.742e^-4	0.727	INTRON Shal
2R	11038893	2R_11038893_SNP [dm3] 2R_15151388_SNP [dm6]	A	C	1.743e^-4	0.727	INTERGENIC
3L	7027467	3L_7027467_SNP [dm3] 3L_7034367_SNP [dm6]	T	A	1.747e^-4	0.727	INTRON Mp
2L	14353375	2L_14353375_SNP [dm3] 2L_14353375_SNP [dm6]	C	T	1.753e^-4	0.727	SYNONYMOUS_CODING l_2_34Fd DOWNSTREAM CG43052	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7900584	2L_7900584_SNP [dm3] 2L_7900584_SNP [dm6]	G	A	1.762e^-4	0.727	INTRON Snoo
3R	15064752	3R_15064752_SNP [dm3] 3R_19239030_SNP [dm6]	A	G	1.765e^-4	0.727	INTRON unc79	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	12213211	2R_12213211_SNP [dm3] 2R_16325706_SNP [dm6]	T	C	1.766e^-4	0.727	UTR_3_PRIME Vha44 DOWNSTREAM CG4282 & 1 other
2L	972842	2L_972842_SNP [dm3] 2L_972842_SNP [dm6]	A	G	1.767e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9285102	2L_9285102_DEL [dm3] 2L_9285102_DEL [dm6]	TT	T	1.769e^-4	0.727	INTRON Ggamma30A
3L	17970794	3L_17970794_SNP [dm3] 3L_17977694_SNP [dm6]	G	T	1.769e^-4	0.727	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2R	16733376	2R_16733376_SNP [dm3] 2R_20845871_SNP [dm6]	G	A	1.773e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19768146	3R_19768146_SNP [dm3] 3R_23942424_SNP [dm6]	T	C	1.779e^-4	0.727	INTRON Gdh	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27135758	3R_27135758_INS [dm3] 3R_31310036_INS [dm6]	A	ACTGCTGCG	1.794e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4896606	2L_4896606_SNP [dm3] 2L_4896606_SNP [dm6]	A	T	1.797e^-4	0.727	INTRON CG3036
3R	8513424	3R_8513424_SNP [dm3] 3R_12687702_SNP [dm6]	C	G	1.803e^-4	0.727	INTRON kar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1051615	3R_1051615_DEL [dm3] 3R_5225893_DEL [dm6]	AGTTTT	CCTG	1.806e^-4	0.727	UPSTREAM Vps37B DOWNSTREAM CG14664 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	5500032	2L_5500032_SNP [dm3] 2L_5500032_SNP [dm6]	G	A	1.809e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11106819	3R_11106819_SNP [dm3] 3R_15281097_SNP [dm6]	G	A	1.816e^-4	0.727	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	7803370	3L_7803370_SNP [dm3] 3L_7810270_SNP [dm6]	T	A	1.818e^-4	0.727	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5076530	X_5076530_SNP [dm3] X_5182497_SNP [dm6]	C	T	1.821e^-4	0.727	UPSTREAM CG5062 INTRON rg & 1 other
2L	6007334	2L_6007334_SNP [dm3] 2L_6007334_SNP [dm6]	C	T	1.822e^-4	0.727	UPSTREAM Gal DOWNSTREAM CG9098 INTERGENIC
2R	8509979	2R_8509979_SNP [dm3] 2R_12622474_SNP [dm6]	C	T	1.824e^-4	0.727	UTR_3_PRIME Galphaq
2L	12588241	2L_12588241_SNP [dm3] 2L_12588241_SNP [dm6]	T	A	1.824e^-4	0.727	INTRON nub
2R	14848050	2R_14848050_SNP [dm3] 2R_18960545_SNP [dm6]	A	T	1.839e^-4	0.727	INTERGENIC
2L	12723915	2L_12723915_SNP [dm3] 2L_12723915_SNP [dm6]	C	T	1.840e^-4	0.727	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
3R	13197656	3R_13197656_SNP [dm3] 3R_17371934_SNP [dm6]	C	G	1.840e^-4	0.727	UPSTREAM CR44256 INTERGENIC
3R	10083636	3R_10083636_SNP [dm3] 3R_14257914_SNP [dm6]	G	A	1.845e^-4	0.727	DOWNSTREAM CG43179 INTRON Aats-met
2L	3628613	2L_3628613_SNP [dm3] 2L_3628613_SNP [dm6]	C	T	1.846e^-4	0.727	INTRON for	TF binding site BDTNP1_TFBS_twi
3R	666945	3R_666945_SNP [dm3] 3R_4841223_SNP [dm6]	T	A	1.848e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16336777	2R_16336777_DEL [dm3] 2R_20449272_DEL [dm6]	TTCTTATTAT	T	1.851e^-4	0.727	INTRON CG12484	TF binding site mE1_TFBS_inv
2L	5981361	2L_5981361_SNP [dm3] 2L_5981361_SNP [dm6]	C	T	1.852e^-4	0.727	UPSTREAM chic & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
X	11193888	X_11193888_SNP [dm3] X_11299855_SNP [dm6]	A	G	1.865e^-4	0.727	INTRON CG44422
2L	7900646	2L_7900646_SNP [dm3] 2L_7900646_SNP [dm6]	G	C	1.867e^-4	0.727	INTRON Snoo
2L	6080045	2L_6080045_SNP [dm3] 2L_6080045_SNP [dm6]	G	A	1.867e^-4	0.727	DOWNSTREAM CR9162 EXON CR44773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	6242994	3L_6242994_SNP [dm3] 3L_6249894_SNP [dm6]	A	T	1.869e^-4	0.727	INTRON Best2
3R	25264399	3R_25264399_SNP [dm3] 3R_29438677_SNP [dm6]	T	G	1.872e^-4	0.727	INTRON Ptp99A
3R	14345446	3R_14345446_SNP [dm3] 3R_18519724_SNP [dm6]	T	G	1.874e^-4	0.727	INTRON fru
2L	9514711	2L_9514711_SNP [dm3] 2L_9514711_SNP [dm6]	A	G	1.879e^-4	0.727	INTRON CG33298
2L	7850149	2L_7850149_DEL [dm3] 2L_7850149_DEL [dm6]	TAAAGAT	T	1.879e^-4	0.727	INTRON CG14535
2L	17778824	2L_17778824_SNP [dm3] 2L_17778824_SNP [dm6]	C	A	1.881e^-4	0.727	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
2L	9285086	2L_9285086_SNP [dm3] 2L_9285086_SNP [dm6]	A	T	1.883e^-4	0.727	INTRON Ggamma30A
3L	19569957	3L_19569957_SNP [dm3] 3L_19576857_SNP [dm6]	A	G	1.886e^-4	0.727	INTRON Shal
2R	1379654	2R_1379654_SNP [dm3] 2R_5492149_SNP [dm6]	G	A	1.895e^-4	0.727	INTRON CG30440
2R	8114726	2R_8114726_SNP [dm3] 2R_12227221_SNP [dm6]	A	G	1.902e^-4	0.727	UPSTREAM CG8854 INTRON CG8854
3L	5824375	3L_5824375_SNP [dm3] 3L_5831275_SNP [dm6]	T	C	1.908e^-4	0.727	INTRON vn	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5824379	3L_5824379_INS [dm3] 3L_5831279_INS [dm6]	C	CCT	1.908e^-4	0.727	INTRON vn	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12640384	2R_12640384_SNP [dm3] 2R_16752879_SNP [dm6]	C	T	1.908e^-4	0.727	UTR_3_PRIME unc-104
2L	9285090	2L_9285090_DEL [dm3] 2L_9285090_DEL [dm6]	TAAACA	T	1.910e^-4	0.727	INTRON Ggamma30A
2R	16443789	2R_16443789_SNP [dm3] 2R_20556284_SNP [dm6]	A	G	1.913e^-4	0.727	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2251504	2L_2251504_SNP [dm3] 2L_2251504_SNP [dm6]	T	A	1.920e^-4	0.727	UPSTREAM Ser12 DOWNSTREAM CG17239 INTERGENIC	TF binding site mE1_TFBS_cad
3L	1272726	3L_1272726_SNP [dm3] 3L_1272726_SNP [dm6]	A	G	1.920e^-4	0.727	INTRON CG9134	TF binding site mE1_TFBS_cad
2L	17930966	2L_17930966_SNP [dm3] 2L_17930966_SNP [dm6]	T	C	1.930e^-4	0.728	INTERGENIC
2L	4304206	2L_4304206_INS [dm3] 2L_4304206_INS [dm6]	A	AGT	1.931e^-4	0.728	INTRON tutl
3L	7803402	3L_7803402_SNP [dm3] 3L_7810302_SNP [dm6]	T	A	1.955e^-4	0.728	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8800266	3R_8800266_SNP [dm3] 3R_12974544_SNP [dm6]	A	G	1.957e^-4	0.728	UPSTREAM CG7381 INTRON CG7381
3R	22447129	3R_22447129_SNP [dm3] 3R_26621407_SNP [dm6]	A	G	1.959e^-4	0.728	UPSTREAM TwdlP INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	489121	3R_489121_SNP [dm3] 3R_4663399_SNP [dm6]	C	T	1.968e^-4	0.728	INTRON CG43427	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16401724	3R_16401724_DEL [dm3] 3R_20576002_DEL [dm6]	ATTTTTAAATCAAAGTTTAA...	A	1.970e^-4	0.728	DOWNSTREAM snoRNA:Psi18S-301 INTRON TFAM	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14848035	2R_14848035_SNP [dm3] 2R_18960530_SNP [dm6]	A	G	1.971e^-4	0.728	INTERGENIC
2R	15104192	2R_15104192_SNP [dm3] 2R_19216687_SNP [dm6]	T	C	1.973e^-4	0.728	INTRON hppy
2L	7779788	2L_7779788_DEL [dm3] 2L_7779788_DEL [dm6]	TTGCA	T	1.984e^-4	0.728	UPSTREAM Uro INTERGENIC
2L	5917082	2L_5917082_SNP [dm3] 2L_5917082_SNP [dm6]	G	A	1.986e^-4	0.728	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19131813	3R_19131813_SNP [dm3] 3R_23306091_SNP [dm6]	G	A	1.988e^-4	0.728	INTRON pnt
2L	17778621	2L_17778621_SNP [dm3] 2L_17778621_SNP [dm6]	G	A	1.989e^-4	0.728	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16962718	3L_16962718_SNP [dm3] 3L_16969618_SNP [dm6]	C	A	1.991e^-4	0.728	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
3L	2647946	3L_2647946_SNP [dm3] 3L_2647946_SNP [dm6]	T	G	1.993e^-4	0.728	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
X	11408086	X_11408086_SNP [dm3] X_11514053_SNP [dm6]	T	A	1.996e^-4	0.728	INTRON Drak
X	5342912	X_5342912_SNP [dm3] X_5448879_SNP [dm6]	G	A	1.998e^-4	0.728	INTRON SPR
2L	19884952	2L_19884952_SNP [dm3] 2L_19884952_SNP [dm6]	A	G	1.999e^-4	0.728	INTRON sick
3L	19520397	3L_19520397_SNP [dm3] 3L_19527297_SNP [dm6]	T	G	2.002e^-4	0.728	DOWNSTREAM Cpr76Bc INTERGENIC
3L	9622150	3L_9622150_SNP [dm3] 3L_9629050_SNP [dm6]	G	A	2.015e^-4	0.728	UPSTREAM CG8336 INTRON CG8336 & 1 other
2L	9673444	2L_9673444_SNP [dm3] 2L_9673444_SNP [dm6]	A	T	2.020e^-4	0.728	INTERGENIC
3R	27654073	3R_27654073_SNP [dm3] 3R_31828351_SNP [dm6]	A	C	2.021e^-4	0.728	INTRON RhoGAP100F
3L	8696567	3L_8696567_SNP [dm3] 3L_8703467_SNP [dm6]	T	A	2.025e^-4	0.728	INTERGENIC
2L	9285518	2L_9285518_SNP [dm3] 2L_9285518_SNP [dm6]	G	A	2.028e^-4	0.728	INTRON Ggamma30A
3R	24845292	3R_24845292_SNP [dm3] 3R_29019570_SNP [dm6]	A	C	2.040e^-4	0.728	INTRON wat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	6417353	2R_6417353_INS [dm3] 2R_10529848_INS [dm6]	G	GAGGCG	2.045e^-4	0.728	INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4265064	2L_4265064_SNP [dm3] 2L_4265064_SNP [dm6]	T	A	2.051e^-4	0.728	INTERGENIC
2L	6331180	2L_6331180_SNP [dm3] 2L_6331180_SNP [dm6]	C	G	2.052e^-4	0.728	UTR_3_PRIME PDZ-GEF
3R	15197708	3R_15197708_SNP [dm3] 3R_19371986_SNP [dm6]	C	A	2.053e^-4	0.728	INTRON Ino80
2R	18227913	2R_18227913_SNP [dm3] 2R_22340408_SNP [dm6]	T	G	2.060e^-4	0.728	INTRON Liprin-gamma
3R	22506909	3R_22506909_INS [dm3] 3R_26681187_INS [dm6]	T	TATT	2.064e^-4	0.728	INTRON beat-VII
2L	18820270	2L_18820270_SNP [dm3] 2L_18820270_SNP [dm6]	T	C	2.067e^-4	0.728	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
3R	27651356	3R_27651356_SNP [dm3] 3R_31825634_SNP [dm6]	C	A	2.068e^-4	0.728	UPSTREAM RhoGAP100F INTRON RhoGAP100F
3L	18806204	3L_18806204_SNP [dm3] 3L_18813104_SNP [dm6]	C	T	2.070e^-4	0.728	INTRON CG14073
X	16760693	X_16760693_INS [dm3] X_16866660_INS [dm6]	T	TTCCTTT	2.070e^-4	0.728	INTRON CG13003
3R	18125629	3R_18125629_SNP [dm3] 3R_22299907_SNP [dm6]	A	T	2.074e^-4	0.728	INTRON CG7084
2L	13236908	2L_13236908_SNP [dm3] 2L_13236908_SNP [dm6]	T	C	2.077e^-4	0.728	INTRON CG5867
3R	8538956	3R_8538956_SNP [dm3] 3R_12713234_SNP [dm6]	G	C	2.083e^-4	0.728	UTR_3_PRIME Men UPSTREAM mus308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sbb
3L	12283172	3L_12283172_SNP [dm3] 3L_12290072_SNP [dm6]	A	G	2.085e^-4	0.728	DOWNSTREAM CG4328 EXON CR45658	TF binding site BDTNP1_TFBS_prd
2R	12088792	2R_12088792_SNP [dm3] 2R_16201287_SNP [dm6]	A	G	2.087e^-4	0.728	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8590379	2L_8590379_SNP [dm3] 2L_8590379_SNP [dm6]	C	T	2.088e^-4	0.728	INTRON Sema-1a EXON CR43855
3L	12374768	3L_12374768_SNP [dm3] 3L_12381668_SNP [dm6]	G	C	2.108e^-4	0.728	INTRON Ncc69	TF binding site mE1_TFBS_inv
2R	14086117	2R_14086117_SNP [dm3] 2R_18198612_SNP [dm6]	G	A	2.110e^-4	0.728	INTERGENIC
3L	5521648	3L_5521648_SNP [dm3] 3L_5528548_SNP [dm6]	T	C	2.110e^-4	0.728	INTRON Lkr
X	3483218	X_3483218_SNP [dm3] X_3589185_SNP [dm6]	G	C	2.113e^-4	0.728	INTRON AstA-R1
3L	12283354	3L_12283354_SNP [dm3] 3L_12290254_SNP [dm6]	C	T	2.120e^-4	0.728	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	1670734	3L_1670734_SNP [dm3] 3L_1670734_SNP [dm6]	T	C	2.121e^-4	0.728	UPSTREAM RabX5 INTRON CG13930	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7778845	2L_7778845_SNP [dm3] 2L_7778845_SNP [dm6]	C	T	2.130e^-4	0.728	UPSTREAM CG7179 INTERGENIC
3L	4364802	3L_4364802_SNP [dm3] 3L_4364802_SNP [dm6]	C	T	2.131e^-4	0.728	UPSTREAM Cip4 & 1 other INTRON mRpS6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11827817	2R_11827817_SNP [dm3] 2R_15940312_SNP [dm6]	T	C	2.132e^-4	0.728	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8617105	3L_8617105_SNP [dm3] 3L_8624005_SNP [dm6]	A	T	2.133e^-4	0.728	UPSTREAM Zasp66 & 1 other INTERGENIC
3R	17293823	3R_17293823_SNP [dm3] 3R_21468101_SNP [dm6]	T	C	2.137e^-4	0.728	INTERGENIC
2L	5712997	2L_5712997_SNP [dm3] 2L_5712997_SNP [dm6]	T	C	2.138e^-4	0.728	SYNONYMOUS_CODING CG7236	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7779087	2L_7779087_DEL [dm3] 2L_7779087_DEL [dm6]	TGATATACATA...	T	2.138e^-4	0.728	UPSTREAM Uro INTERGENIC
2L	7944075	2L_7944075_SNP [dm3] 2L_7944075_SNP [dm6]	G	A	2.139e^-4	0.728	INTRON Snoo
3L	7826631	3L_7826631_SNP [dm3] 3L_7833531_SNP [dm6]	G	C	2.139e^-4	0.728	UPSTREAM Pdp1 INTRON Pdp1
2L	7635416	2L_7635416_SNP [dm3] 2L_7635416_SNP [dm6]	A	G	2.142e^-4	0.728	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
X	7671544	X_7671544_DEL [dm3] X_7777511_DEL [dm6]	TT	T	2.146e^-4	0.728	UPSTREAM CG32718 INTERGENIC
3R	14448271	3R_14448271_SNP [dm3] 3R_18622549_SNP [dm6]	C	T	2.150e^-4	0.728	INTRON qin	TF binding site mE1_TFBS_inv
3R	8431661	3R_8431661_SNP [dm3] 3R_12605939_SNP [dm6]	A	T	2.164e^-4	0.73	INTERGENIC
3L	932710	3L_932710_SNP [dm3] 3L_932710_SNP [dm6]	T	C	2.172e^-4	0.73	INTRON Glut1
3L	10735446	3L_10735446_INS [dm3] 3L_10742346_INS [dm6]	A	AA	2.173e^-4	0.73	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	7803403	3L_7803403_DEL [dm3] 3L_7810303_DEL [dm6]	ATG	A	2.174e^-4	0.73	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13210277	3R_13210277_DEL [dm3] 3R_17384555_DEL [dm6]	AGCAAGTAGTAAACGGAA...	A	2.183e^-4	0.73	INTRON Brf & 1 other
X	9628029	X_9628029_SNP [dm3] X_9733996_SNP [dm6]	C	T	2.185e^-4	0.73	INTRON Sp1	TF binding site mE1_TFBS_cnc
2L	2257144	2L_2257144_SNP [dm3] 2L_2257144_SNP [dm6]	C	T	2.185e^-4	0.73	DOWNSTREAM CR44787 INTERGENIC
2L	17778607	2L_17778607_SNP [dm3] 2L_17778607_SNP [dm6]	T	A	2.187e^-4	0.73	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17649078	2R_17649078_SNP [dm3] 2R_21761573_SNP [dm6]	T	C	2.199e^-4	0.732	INTERGENIC
2L	7779197	2L_7779197_SNP [dm3] 2L_7779197_SNP [dm6]	A	G	2.204e^-4	0.733	UPSTREAM Uro INTERGENIC
2L	9196398	2L_9196398_SNP [dm3] 2L_9196398_SNP [dm6]	T	A	2.212e^-4	0.733	INTRON tai
2L	13236920	2L_13236920_SNP [dm3] 2L_13236920_SNP [dm6]	G	A	2.217e^-4	0.733	INTRON CG5867
2L	7427967	2L_7427967_SNP [dm3] 2L_7427967_SNP [dm6]	T	G	2.231e^-4	0.733	INTRON CG5261
2L	7427975	2L_7427975_INS [dm3] 2L_7427975_INS [dm6]	A	ACCAAATTAATAATTTATGA...	2.231e^-4	0.733	INTRON CG5261
2L	7427982	2L_7427982_SNP [dm3] 2L_7427982_SNP [dm6]	C	T	2.231e^-4	0.733	INTRON CG5261
2R	20177022	2R_20177022_SNP [dm3] 2R_24289499_SNP [dm6]	A	G	2.235e^-4	0.733	SYNONYMOUS_CODING nvy	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15027922	2R_15027922_SNP [dm3] 2R_19140417_SNP [dm6]	C	T	2.236e^-4	0.733	SYNONYMOUS_CODING CG15111	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17778787	2L_17778787_SNP [dm3] 2L_17778787_SNP [dm6]	T	C	2.241e^-4	0.733	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
2R	15006361	2R_15006361_SNP [dm3] 2R_19118856_SNP [dm6]	T	C	2.243e^-4	0.733	SYNONYMOUS_CODING 5-HT1A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	9675391	2R_9675391_SNP [dm3] 2R_13787886_SNP [dm6]	G	A	2.256e^-4	0.733	DOWNSTREAM Cpr50Ca INTERGENIC
2R	10057977	2R_10057977_SNP [dm3] 2R_14170472_SNP [dm6]	C	G	2.257e^-4	0.733	UTR_5_PRIME CG8331 UPSTREAM CG8331 & 1 other DOWNSTREAM CG18324	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6119389	X_6119389_SNP [dm3] X_6225356_SNP [dm6]	C	A	2.268e^-4	0.733	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4840608	3L_4840608_SNP [dm3] 3L_4840608_SNP [dm6]	C	A	2.279e^-4	0.733	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	17955275	2L_17955275_SNP [dm3] 2L_17955275_SNP [dm6]	C	T	2.281e^-4	0.733	INTERGENIC
2L	13313539	2L_13313539_SNP [dm3] 2L_13313539_SNP [dm6]	T	A	2.289e^-4	0.733	INTRON CG43778	TF binding site mE1_TFBS_HSA
3R	23673604	3R_23673604_SNP [dm3] 3R_27847882_SNP [dm6]	G	A	2.295e^-4	0.733	DOWNSTREAM Or98a INTRON CG34353
2R	11387310	2R_11387310_SNP [dm3] 2R_15499805_SNP [dm6]	G	A	2.296e^-4	0.733	SYNONYMOUS_CODING Ir52a
2L	12588451	2L_12588451_SNP [dm3] 2L_12588451_SNP [dm6]	C	A	2.297e^-4	0.733	INTRON nub
2R	15067385	2R_15067385_SNP [dm3] 2R_19179880_SNP [dm6]	T	A	2.299e^-4	0.733	INTRON hppy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	14848003	2R_14848003_SNP [dm3] 2R_18960498_SNP [dm6]	T	C	2.306e^-4	0.733	DOWNSTREAM sano INTERGENIC
2R	11370565	2R_11370565_SNP [dm3] 2R_15483060_SNP [dm6]	T	A	2.316e^-4	0.733	UPSTREAM CG8180 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23379678	3R_23379678_SNP [dm3] 3R_27553956_SNP [dm6]	C	T	2.322e^-4	0.733	INTRON Klp98A
2L	12228866	2L_12228866_SNP [dm3] 2L_12228866_SNP [dm6]	G	T	2.325e^-4	0.733	INTRON aret
3L	5824374	3L_5824374_SNP [dm3] 3L_5831274_SNP [dm6]	G	A	2.326e^-4	0.733	INTRON vn	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9862304	2L_9862304_INS [dm3] 2L_9862304_INS [dm6]	A	AGCAATTAA	2.333e^-4	0.733	INTRON nAChRalpha6
2R	16443787	2R_16443787_SNP [dm3] 2R_20556282_SNP [dm6]	C	T	2.344e^-4	0.733	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18806248	3L_18806248_SNP [dm3] 3L_18813148_SNP [dm6]	G	C	2.345e^-4	0.733	INTRON CG14073
X	9076789	X_9076789_SNP [dm3] X_9182756_SNP [dm6]	A	T	2.346e^-4	0.733	UTR_3_PRIME mei-P26
2L	2257173	2L_2257173_SNP [dm3] 2L_2257173_SNP [dm6]	C	T	2.349e^-4	0.733	DOWNSTREAM CR44787 INTERGENIC
3R	26869104	3R_26869104_SNP [dm3] 3R_31043382_SNP [dm6]	T	A	2.355e^-4	0.733	SPLICE_SITE_REGION CanA1 INTRON CanA1
2L	5713015	2L_5713015_SNP [dm3] 2L_5713015_SNP [dm6]	T	C	2.358e^-4	0.733	SYNONYMOUS_CODING CG7236	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10751490	X_10751490_SNP [dm3] X_10857457_SNP [dm6]	A	G	2.361e^-4	0.733	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12083209	3L_12083209_INS [dm3] 3L_12090109_INS [dm6]	A	CT	2.365e^-4	0.733	DOWNSTREAM CG17154 INTERGENIC
3R	22447383	3R_22447383_SNP [dm3] 3R_26621661_SNP [dm6]	A	T	2.366e^-4	0.733	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
2L	18013576	2L_18013576_SNP [dm3] 2L_18013576_SNP [dm6]	A	G	2.368e^-4	0.733	INTRON rdo	regulatory region REDfly_CRMs
2L	7779016	2L_7779016_SNP [dm3] 2L_7779016_SNP [dm6]	T	A	2.369e^-4	0.733	UPSTREAM CG7179 INTERGENIC
2R	11369347	2R_11369347_SNP [dm3] 2R_15481842_SNP [dm6]	C	A	2.380e^-4	0.733	INTRON CG8180	TF binding site BDTNP1_TFBS_dl
3R	15067969	3R_15067969_SNP [dm3] 3R_19242247_SNP [dm6]	A	G	2.382e^-4	0.733	UTR_3_PRIME unc79 INTRON unc79	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17778618	2L_17778618_SNP [dm3] 2L_17778618_SNP [dm6]	T	G	2.383e^-4	0.733	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17778619	2L_17778619_SNP [dm3] 2L_17778619_SNP [dm6]	C	A	2.383e^-4	0.733	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15939781	2R_15939781_SNP [dm3] 2R_20052276_SNP [dm6]	G	A	2.384e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	18114748	2L_18114748_SNP [dm3] 2L_18114748_SNP [dm6]	T	C	2.387e^-4	0.733	SYNONYMOUS_CODING CG15152
3L	9340927	3L_9340927_SNP [dm3] 3L_9347827_SNP [dm6]	C	T	2.388e^-4	0.733	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
3L	6387908	3L_6387908_SNP [dm3] 3L_6394808_SNP [dm6]	A	T	2.393e^-4	0.733	INTERGENIC
2R	19573583	2R_19573583_INS [dm3] 2R_23686060_INS [dm6]	T	TCCT	2.410e^-4	0.733	UPSTREAM l_2_efl INTRON St3
X	20443973	X_20443973_SNP [dm3] X_20572946_SNP [dm6]	T	G	2.414e^-4	0.733	INTERGENIC
3L	20766270	3L_20766270_SNP [dm3] 3L_20773170_SNP [dm6]	C	A	2.415e^-4	0.733	UTR_5_PRIME Pitslre INTRON Pitslre
2L	6330672	2L_6330672_SNP [dm3] 2L_6330672_SNP [dm6]	C	A	2.421e^-4	0.733	UTR_3_PRIME PDZ-GEF INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
3R	18125592	3R_18125592_DEL [dm3] 3R_22299870_DEL [dm6]	AG	A	2.430e^-4	0.733	INTRON CG7084
2R	17927489	2R_17927489_INS [dm3] 2R_22039984_INS [dm6]	T	TAGCCTAATAGTTTTGGAAA...	2.430e^-4	0.733	UPSTREAM CG34370 INTERGENIC
2L	12588444	2L_12588444_SNP [dm3] 2L_12588444_SNP [dm6]	T	A	2.431e^-4	0.733	INTRON nub
3L	8675264	3L_8675264_SNP [dm3] 3L_8682164_SNP [dm6]	T	G	2.432e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
2R	16733844	2R_16733844_SNP [dm3] 2R_20846339_SNP [dm6]	A	G	2.433e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12676000	X_12676000_SNP [dm3] X_12781967_SNP [dm6]	A	C	2.433e^-4	0.733	INTRON CG32647
3L	5118884	3L_5118884_SNP [dm3] 3L_5125784_SNP [dm6]	T	C	2.439e^-4	0.733	INTERGENIC
2R	12073116	2R_12073116_SNP [dm3] 2R_16185611_SNP [dm6]	C	T	2.439e^-4	0.733	SYNONYMOUS_CODING CG8441 UPSTREAM clu DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	18328692	2L_18328692_SNP [dm3] 2L_18328692_SNP [dm6]	T	G	2.443e^-4	0.733	INTRON Fas3
2L	9285099	2L_9285099_SNP [dm3] 2L_9285099_SNP [dm6]	T	C	2.445e^-4	0.733	INTRON Ggamma30A
2R	16531693	2R_16531693_SNP [dm3] 2R_20644188_SNP [dm6]	T	C	2.450e^-4	0.733	SYNONYMOUS_CODING DMAP1 UPSTREAM CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	7987000	2L_7987000_SNP [dm3] 2L_7987000_SNP [dm6]	G	C	2.457e^-4	0.733	UTR_3_PRIME pes DOWNSTREAM pes & 1 other
3L	12269423	3L_12269423_SNP [dm3] 3L_12276323_SNP [dm6]	T	G	2.458e^-4	0.733	INTRON CG4300	TF binding site BDTNP1_TFBS_dl
2L	4830844	2L_4830844_DEL [dm3] 2L_4830844_DEL [dm6]	TTG	T	2.459e^-4	0.733	UTR_3_PRIME Ir25a UPSTREAM mir-4912 & 1 other DOWNSTREAM Ir25a INTRAGENIC Ir25a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	18135629	2R_18135629_SNP [dm3] 2R_22248124_SNP [dm6]	C	T	2.461e^-4	0.733	INTRON dve	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	3354863	2R_3354863_SNP [dm3] 2R_7467358_SNP [dm6]	A	G	2.468e^-4	0.733	UPSTREAM p47 INTRON Aldh-III	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17927498	2R_17927498_SNP [dm3] 2R_22039993_SNP [dm6]	C	G	2.469e^-4	0.733	UPSTREAM CG34370 INTERGENIC
2L	17778234	2L_17778234_SNP [dm3] 2L_17778234_SNP [dm6]	C	T	2.476e^-4	0.733	UTR_5_PRIME CadN	TF binding site mE1_TFBS_Trl
3L	1902014	3L_1902014_SNP [dm3] 3L_1902014_SNP [dm6]	C	T	2.503e^-4	0.733	UTR_3_PRIME CG1887 INTRON CG1887
2L	9191436	2L_9191436_SNP [dm3] 2L_9191436_SNP [dm6]	T	C	2.520e^-4	0.733	INTRON tai
2R	15270817	2R_15270817_SNP [dm3] 2R_19383312_SNP [dm6]	G	A	2.523e^-4	0.733	SYNONYMOUS_CODING CG10073
3R	10541283	3R_10541283_SNP [dm3] 3R_14715561_SNP [dm6]	C	T	2.524e^-4	0.733	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10183585	X_10183585_SNP [dm3] X_10289552_SNP [dm6]	T	C	2.528e^-4	0.733	INTRON alpha-Man-I
2L	11925531	2L_11925531_SNP [dm3] 2L_11925531_SNP [dm6]	A	G	2.545e^-4	0.733	INTRON Pde1c
3L	7270840	3L_7270840_SNP [dm3] 3L_7277740_SNP [dm6]	G	A	2.548e^-4	0.733	INTRON unc-13-4A
3L	10413521	3L_10413521_SNP [dm3] 3L_10420421_SNP [dm6]	A	T	2.554e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6119371	X_6119371_SNP [dm3] X_6225338_SNP [dm6]	T	C	2.555e^-4	0.733	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8070216	3L_8070216_SNP [dm3] 3L_8077116_SNP [dm6]	G	A	2.556e^-4	0.733	UPSTREAM Ect4 INTRON Ect4	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	22456430	3R_22456430_SNP [dm3] 3R_26630708_SNP [dm6]	C	T	2.559e^-4	0.733	SYNONYMOUS_CODING TwdlJ	TF binding site mE1_TFBS_chinmo
2R	17647629	2R_17647629_SNP [dm3] 2R_21760124_SNP [dm6]	T	A	2.566e^-4	0.733	INTERGENIC
3R	15356360	3R_15356360_INS [dm3] 3R_19530638_INS [dm6]	A	AT	2.572e^-4	0.733	INTRON Dys	TF binding site BDTNP1_TFBS_dl
2L	4130306	2L_4130306_SNP [dm3] 2L_4130306_SNP [dm6]	T	A	2.580e^-4	0.733	INTERGENIC
3R	8538954	3R_8538954_SNP [dm3] 3R_12713232_SNP [dm6]	A	C	2.581e^-4	0.733	UTR_3_PRIME Men UPSTREAM mus308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sbb
2R	11373169	2R_11373169_SNP [dm3] 2R_15485664_SNP [dm6]	G	A	2.582e^-4	0.733	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	8437459	3R_8437459_SNP [dm3] 3R_12611737_SNP [dm6]	C	T	2.587e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10357313	3L_10357313_SNP [dm3] 3L_10364213_SNP [dm6]	T	A	2.589e^-4	0.733	UPSTREAM CR44327 EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13129051	3R_13129051_SNP [dm3] 3R_17303329_SNP [dm6]	C	G	2.589e^-4	0.733	INTERGENIC
3R	13206164	3R_13206164_DEL [dm3] 3R_17380442_DEL [dm6]	TCGGTTT	T	2.589e^-4	0.733	INTRON Brf & 1 other
3R	15083676	3R_15083676_SNP [dm3] 3R_19257954_SNP [dm6]	G	T	2.590e^-4	0.733	SYNONYMOUS_CODING CG14280	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12675997	X_12675997_SNP [dm3] X_12781964_SNP [dm6]	A	G	2.593e^-4	0.733	INTRON CG32647
2L	22097965	2L_22097965_SNP [dm3] 2L_22097965_SNP [dm6]	T	G	2.604e^-4	0.733	INTERGENIC	transposable element FlyBase
2L	4897284	2L_4897284_SNP [dm3] 2L_4897284_SNP [dm6]	C	G	2.608e^-4	0.733	INTRON CG3036
2L	4897401	2L_4897401_SNP [dm3] 2L_4897401_SNP [dm6]	C	T	2.608e^-4	0.733	INTRON CG3036	TF binding site mE1_TFBS_sens
2R	17647628	2R_17647628_SNP [dm3] 2R_21760123_SNP [dm6]	C	A	2.612e^-4	0.733	INTERGENIC
3R	5211087	3R_5211087_SNP [dm3] 3R_9385365_SNP [dm6]	A	T	2.616e^-4	0.733	INTRON FER
2L	4496071	2L_4496071_SNP [dm3] 2L_4496071_SNP [dm6]	A	G	2.626e^-4	0.733	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	4897849	2L_4897849_SNP [dm3] 2L_4897849_SNP [dm6]	G	A	2.629e^-4	0.733	INTRON CG3036
2L	1228189	2L_1228189_SNP [dm3] 2L_1228189_SNP [dm6]	T	C	2.632e^-4	0.733	SPLICE_SITE_REGION CG42329 INTRON CG42329
X	11854026	X_11854026_SNP [dm3] X_11959993_SNP [dm6]	G	A	2.635e^-4	0.733	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14446308	3R_14446308_INS [dm3] 3R_18620586_INS [dm6]	A	AA	2.638e^-4	0.733	UPSTREAM CG14304 INTRON qin & 1 other
X	6119382	X_6119382_SNP [dm3] X_6225349_SNP [dm6]	A	G	2.649e^-4	0.733	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	18125601	3R_18125601_SNP [dm3] 3R_22299879_SNP [dm6]	T	A	2.655e^-4	0.733	INTRON CG7084
2L	5685042	2L_5685042_SNP [dm3] 2L_5685042_SNP [dm6]	C	A	2.655e^-4	0.733	INTERGENIC
2R	7129516	2R_7129516_SNP [dm3] 2R_11242011_SNP [dm6]	G	A	2.659e^-4	0.733	SYNONYMOUS_CODING Listericin
3R	24836863	3R_24836863_SNP [dm3] 3R_29011141_SNP [dm6]	C	T	2.668e^-4	0.733	INTRON wat
3L	15623955	3L_15623955_DEL [dm3] 3L_15630855_DEL [dm6]	AG	T	2.670e^-4	0.733	INTRON comm3
2L	5685015	2L_5685015_SNP [dm3] 2L_5685015_SNP [dm6]	A	G	2.671e^-4	0.733	INTERGENIC
2R	10280684	2R_10280684_SNP [dm3] 2R_14393179_SNP [dm6]	A	T	2.681e^-4	0.733	DOWNSTREAM CG10104 INTERGENIC
X	6119409	X_6119409_SNP [dm3] X_6225376_SNP [dm6]	T	G	2.681e^-4	0.733	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13222775	3R_13222775_SNP [dm3] 3R_17397053_SNP [dm6]	T	A	2.695e^-4	0.733	UTR_3_PRIME Sur-8	TF binding site mE1_TFBS_cad
2L	17774846	2L_17774846_SNP [dm3] 2L_17774846_SNP [dm6]	G	A	2.700e^-4	0.733	INTRON CadN
2L	9911920	2L_9911920_DEL [dm3] 2L_9911920_DEL [dm6]	TG	T	2.703e^-4	0.733	UPSTREAM Srp54 INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11373123	2R_11373123_SNP [dm3] 2R_15485618_SNP [dm6]	C	A	2.719e^-4	0.733	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	10865491	3R_10865491_SNP [dm3] 3R_15039769_SNP [dm6]	C	T	2.723e^-4	0.733	EXON CR44944	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7779060	2L_7779060_SNP [dm3] 2L_7779060_SNP [dm6]	A	T	2.723e^-4	0.733	INTERGENIC
2L	1666075	2L_1666075_SNP [dm3] 2L_1666075_SNP [dm6]	C	G	2.725e^-4	0.733	INTRON chinmo
X	6988455	X_6988455_DEL [dm3] X_7094422_DEL [dm6]	GG	G	2.725e^-4	0.733	INTRON Sxl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	7803399	3L_7803399_SNP [dm3] 3L_7810299_SNP [dm6]	G	C	2.726e^-4	0.733	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19359977	2R_19359977_SNP [dm3] 2R_23472454_SNP [dm6]	C	T	2.726e^-4	0.733	SYNONYMOUS_CODING Or59c UPSTREAM Or59b INTRON CG43795	TF binding site mE1_TFBS_chinmo
2L	15299344	2L_15299344_SNP [dm3] 2L_15299344_SNP [dm6]	A	G	2.727e^-4	0.733	UTR_3_PRIME CG15262
X	20827108	X_20827108_SNP [dm3] X_20956081_SNP [dm6]	A	G	2.729e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9637329	2R_9637329_SNP [dm3] 2R_13749824_SNP [dm6]	A	G	2.733e^-4	0.733	DOWNSTREAM fas INTERGENIC
X	2592936	X_2592936_SNP [dm3] X_2698903_SNP [dm6]	A	G	2.747e^-4	0.733	SYNONYMOUS_CODING CG2662 UPSTREAM CG2658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9246338	2R_9246338_SNP [dm3] 2R_13358833_SNP [dm6]	C	T	2.747e^-4	0.733	INTERGENIC
3R	13218877	3R_13218877_SNP [dm3] 3R_17393155_SNP [dm6]	C	G	2.766e^-4	0.733	UPSTREAM CR44160 DOWNSTREAM CREG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9745583	2L_9745583_SNP [dm3] 2L_9745583_SNP [dm6]	A	G	2.768e^-4	0.733	INTRON Nckx30C
X	4531647	X_4531647_SNP [dm3] X_4637614_SNP [dm6]	C	G	2.770e^-4	0.733	NON_SYNONYMOUS_CODING pon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17956194	3R_17956194_SNP [dm3] 3R_22130472_SNP [dm6]	T	G	2.774e^-4	0.733	INTRON CG42390
3L	10088213	3L_10088213_INS [dm3] 3L_10095113_INS [dm6]	T	TGTT	2.775e^-4	0.733	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
3L	15957664	3L_15957664_SNP [dm3] 3L_15964564_SNP [dm6]	A	G	2.776e^-4	0.733	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15638732	3L_15638732_SNP [dm3] 3L_15645632_SNP [dm6]	A	T	2.776e^-4	0.733	INTRON comm3
2L	5713258	2L_5713258_SNP [dm3] 2L_5713258_SNP [dm6]	C	T	2.779e^-4	0.733	SYNONYMOUS_CODING CG7236	TF binding site mE1_TFBS_chinmo
2R	11968011	2R_11968011_SNP [dm3] 2R_16080506_SNP [dm6]	C	T	2.780e^-4	0.733	DOWNSTREAM Dg INTERGENIC
2L	1648161	2L_1648161_SNP [dm3] 2L_1648161_SNP [dm6]	G	A	2.781e^-4	0.733	UPSTREAM CR45695 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4558070	X_4558070_SNP [dm3] X_4664037_SNP [dm6]	T	C	2.782e^-4	0.733	INTRON CG3009
2L	7986555	2L_7986555_SNP [dm3] 2L_7986555_SNP [dm6]	T	C	2.785e^-4	0.733	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
2L	10273956	2L_10273956_SNP [dm3] 2L_10273956_SNP [dm6]	T	C	2.787e^-4	0.733	INTRON Utx
2R	13303215	2R_13303215_SNP [dm3] 2R_17415710_SNP [dm6]	T	C	2.787e^-4	0.733	SYNONYMOUS_CODING cnk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5917349	2L_5917349_SNP [dm3] 2L_5917349_SNP [dm6]	A	G	2.788e^-4	0.733	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_chinmo
2L	13600835	2L_13600835_SNP [dm3] 2L_13600835_SNP [dm6]	G	A	2.788e^-4	0.733	INTRON kuz
3L	12374713	3L_12374713_SNP [dm3] 3L_12381613_SNP [dm6]	A	C	2.789e^-4	0.733	INTRON Ncc69	TF binding site mE1_TFBS_inv
2L	6546636	2L_6546636_SNP [dm3] 2L_6546636_SNP [dm6]	G	C	2.790e^-4	0.733	UTR_5_PRIME eya	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	22441401	3R_22441401_SNP [dm3] 3R_26615679_SNP [dm6]	G	A	2.795e^-4	0.733	INTERGENIC
2L	11300212	2L_11300212_SNP [dm3] 2L_11300212_SNP [dm6]	C	A	2.799e^-4	0.733	INTERGENIC
3L	19345970	3L_19345970_SNP [dm3] 3L_19352870_SNP [dm6]	A	G	2.800e^-4	0.733	INTRON CG32206
2L	14028308	2L_14028308_SNP [dm3] 2L_14028308_SNP [dm6]	G	A	2.801e^-4	0.733	NON_SYNONYMOUS_CODING CG4500 DOWNSTREAM CG18095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9079134	2L_9079134_SNP [dm3] 2L_9079134_SNP [dm6]	C	T	2.817e^-4	0.733	INTERGENIC
2R	1352419	2R_1352419_SNP [dm3] 2R_5464914_SNP [dm6]	G	T	2.824e^-4	0.733	INTERGENIC	transposable element FlyBase
3L	8548330	3L_8548330_SNP [dm3] 3L_8555230_SNP [dm6]	G	T	2.825e^-4	0.733	INTRON rhea
3L	18726410	3L_18726410_SNP [dm3] 3L_18733310_SNP [dm6]	G	A	2.828e^-4	0.733	INTERGENIC
3R	10230428	3R_10230428_SNP [dm3] 3R_14404706_SNP [dm6]	G	C	2.831e^-4	0.733	INTRON cv-c
3R	12758220	3R_12758220_SNP [dm3] 3R_16932498_SNP [dm6]	G	A	2.837e^-4	0.733	SYNONYMOUS_CODING Abd-B UPSTREAM Abd-B INTRON Abd-B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2999738	3L_2999738_SNP [dm3] 3L_2999738_SNP [dm6]	A	G	2.839e^-4	0.733	INTERGENIC
2L	9286707	2L_9286707_SNP [dm3] 2L_9286707_SNP [dm6]	A	C	2.840e^-4	0.733	INTRON Ggamma30A
2L	5711679	2L_5711679_SNP [dm3] 2L_5711679_SNP [dm6]	T	C	2.840e^-4	0.733	UPSTREAM CG7236 INTRON CG7236
2L	7779179	2L_7779179_SNP [dm3] 2L_7779179_SNP [dm6]	G	A	2.842e^-4	0.733	UPSTREAM Uro INTERGENIC
2L	3908291	2L_3908291_SNP [dm3] 2L_3908291_SNP [dm6]	G	A	2.843e^-4	0.733	INTRON fred
X	5342901	X_5342901_SNP [dm3] X_5448868_SNP [dm6]	C	T	2.843e^-4	0.733	INTRON SPR
X	6119316	X_6119316_SNP [dm3] X_6225283_SNP [dm6]	A	G	2.844e^-4	0.733	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	12801601	3L_12801601_SNP [dm3] 3L_12808501_SNP [dm6]	T	A	2.848e^-4	0.733	UPSTREAM CG32110 INTRON Sap130	TF binding site mE1_TFBS_cad
2L	12588447	2L_12588447_DEL [dm3] 2L_12588447_DEL [dm6]	CTT	C	2.863e^-4	0.733	INTRON nub
3R	26209538	3R_26209538_SNP [dm3] 3R_30383816_SNP [dm6]	G	A	2.869e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19917447	2R_19917447_SNP [dm3] 2R_24029924_SNP [dm6]	G	A	2.870e^-4	0.733	NON_SYNONYMOUS_CODING CG3163 DOWNSTREAM CG30172	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	12073979	2R_12073979_SNP [dm3] 2R_16186474_SNP [dm6]	G	A	2.875e^-4	0.733	START_GAINED CG8441 UTR_5_PRIME CG8441 UPSTREAM clu & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Ubx
2R	11804857	2R_11804857_SNP [dm3] 2R_15917352_SNP [dm6]	A	T	2.876e^-4	0.733	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
X	4531101	X_4531101_SNP [dm3] X_4637068_SNP [dm6]	T	C	2.876e^-4	0.733	INTRON pon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20428099	2L_20428099_SNP [dm3] 2L_20428099_SNP [dm6]	G	T	2.878e^-4	0.733	UPSTREAM CG31688 INTRON CG31688	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27135832	3R_27135832_SNP [dm3] 3R_31310110_SNP [dm6]	T	C	2.880e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11781210	3R_11781210_INS [dm3] 3R_15955488_INS [dm6]	T	TCT	2.881e^-4	0.733	INTRON Sap47
3R	23185781	3R_23185781_SNP [dm3] 3R_27360059_SNP [dm6]	T	G	2.891e^-4	0.733	INTRON CG42534
2R	11373153	2R_11373153_SNP [dm3] 2R_15485648_SNP [dm6]	G	C	2.897e^-4	0.733	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10217158	3L_10217158_SNP [dm3] 3L_10224058_SNP [dm6]	C	A	2.897e^-4	0.733	NON_SYNONYMOUS_CODING scramb1 UPSTREAM scramb1
3R	14059917	3R_14059917_SNP [dm3] 3R_18234195_SNP [dm6]	G	A	2.899e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15076171	2R_15076171_INS [dm3] 2R_19188666_INS [dm6]	T	TT	2.899e^-4	0.733	INTRON hppy
2L	10543808	2L_10543808_SNP [dm3] 2L_10543808_SNP [dm6]	G	A	2.905e^-4	0.733	UPSTREAM CR44618 INTERGENIC	TF binding site mE1_TFBS_cad
X	8572871	X_8572871_SNP [dm3] X_8678838_SNP [dm6]	A	T	2.907e^-4	0.733	SYNONYMOUS_CODING CG12772	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6387461	2L_6387461_SNP [dm3] 2L_6387461_SNP [dm6]	C	A	2.912e^-4	0.733	INTRON CG42368
3L	7794297	3L_7794297_SNP [dm3] 3L_7801197_SNP [dm6]	C	T	2.912e^-4	0.733	INTRON CG32369
2R	11373346	2R_11373346_SNP [dm3] 2R_15485841_SNP [dm6]	C	T	2.914e^-4	0.733	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11364469	2R_11364469_SNP [dm3] 2R_15476964_SNP [dm6]	A	G	2.916e^-4	0.733	INTRON CG8180
2R	17927399	2R_17927399_SNP [dm3] 2R_22039894_SNP [dm6]	G	A	2.926e^-4	0.733	UPSTREAM CG34370 INTERGENIC
3L	18804244	3L_18804244_DEL [dm3] 3L_18811144_DEL [dm6]	AAA	A	2.930e^-4	0.733	INTRON CG14073	TF binding site mE1_TFBS_kn
2L	22097915	2L_22097915_SNP [dm3] 2L_22097915_SNP [dm6]	G	C	2.932e^-4	0.733	INTERGENIC	transposable element FlyBase
X	17933312	X_17933312_SNP [dm3] X_18039279_SNP [dm6]	G	A	2.935e^-4	0.733	START_GAINED Sh UTR_5_PRIME Sh
2R	11373333	2R_11373333_SNP [dm3] 2R_15485828_SNP [dm6]	C	T	2.939e^-4	0.733	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13236936	2L_13236936_SNP [dm3] 2L_13236936_SNP [dm6]	G	T	2.942e^-4	0.733	INTRON CG5867
3R	12078948	3R_12078948_SNP [dm3] 3R_16253226_SNP [dm6]	A	G	2.955e^-4	0.733	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13947093	2R_13947093_SNP [dm3] 2R_18059588_SNP [dm6]	G	A	2.959e^-4	0.733	UPSTREAM CR45314 INTERGENIC
3R	22447968	3R_22447968_SNP [dm3] 3R_26622246_SNP [dm6]	G	A	2.960e^-4	0.733	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
2L	4489652	2L_4489652_SNP [dm3] 2L_4489652_SNP [dm6]	G	C	2.963e^-4	0.733	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	6007078	2L_6007078_SNP [dm3] 2L_6007078_SNP [dm6]	C	T	2.964e^-4	0.733	UPSTREAM Gal DOWNSTREAM CR43866 & 1 other INTERGENIC
2R	1866850	2R_1866850_SNP [dm3] 2R_5979345_SNP [dm6]	G	A	2.968e^-4	0.733	SYNONYMOUS_CODING mle START_GAINED mle UTR_5_PRIME mle
X	15456942	X_15456942_DEL [dm3] X_15562909_DEL [dm6]	AC	A	2.969e^-4	0.733	INTERGENIC
X	14088535	X_14088535_SNP [dm3] X_14194502_SNP [dm6]	T	C	2.971e^-4	0.733	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
2L	7900697	2L_7900697_SNP [dm3] 2L_7900697_SNP [dm6]	T	A	2.971e^-4	0.733	INTRON Snoo
2L	18388556	2L_18388556_SNP [dm3] 2L_18388556_SNP [dm6]	C	T	2.975e^-4	0.733	SYNONYMOUS_CODING Fas3 INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11827857	2R_11827857_SNP [dm3] 2R_15940352_SNP [dm6]	C	T	2.977e^-4	0.733	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5685037	2L_5685037_SNP [dm3] 2L_5685037_SNP [dm6]	C	A	2.978e^-4	0.733	INTERGENIC
2L	8590411	2L_8590411_SNP [dm3] 2L_8590411_SNP [dm6]	A	T	2.980e^-4	0.733	INTRON Sema-1a EXON CR43855
2R	3346539	2R_3346539_SNP [dm3] 2R_7459034_SNP [dm6]	T	C	2.983e^-4	0.733	UPSTREAM Inos DOWNSTREAM CG11141 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4264152	2L_4264152_SNP [dm3] 2L_4264152_SNP [dm6]	G	T	2.989e^-4	0.733	INTERGENIC
3R	17993766	3R_17993766_SNP [dm3] 3R_22168044_SNP [dm6]	C	G	2.990e^-4	0.733	INTRON SKIP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3R	25977402	3R_25977402_SNP [dm3] 3R_30151680_SNP [dm6]	G	T	2.995e^-4	0.733	UPSTREAM CG15529 INTERGENIC
2R	17779984	2R_17779984_SNP [dm3] 2R_21892479_SNP [dm6]	T	A	3.000e^-4	0.733	INTRON Fili
3L	8607457	3L_8607457_DEL [dm3] 3L_8614357_DEL [dm6]	TGGCAT	T	3.000e^-4	0.733	INTRON CG6282
2L	12588424	2L_12588424_SNP [dm3] 2L_12588424_SNP [dm6]	T	A	3.006e^-4	0.733	INTRON nub
3L	14052318	3L_14052318_SNP [dm3] 3L_14059218_SNP [dm6]	T	A	3.007e^-4	0.733	INTRON CG32138
2L	13581911	2L_13581911_SNP [dm3] 2L_13581911_SNP [dm6]	G	A	3.011e^-4	0.733	UPSTREAM CR44973 INTRON kuz	transposable element FlyBase
3R	26868568	3R_26868568_SNP [dm3] 3R_31042846_SNP [dm6]	T	C	3.013e^-4	0.733	SYNONYMOUS_CODING CanA1
2R	6230497	2R_6230497_SNP [dm3] 2R_10342992_SNP [dm6]	A	C	3.032e^-4	0.736	INTRON CG42732
3R	13112813	3R_13112813_SNP [dm3] 3R_17287091_SNP [dm6]	A	T	3.033e^-4	0.736	UPSTREAM CR43490 EXON CR43489
2L	5920825	2L_5920825_INS [dm3] 2L_5920825_INS [dm6]	A	AACATATTTT	3.039e^-4	0.737	INTRON bchs
3R	6606804	3R_6606804_SNP [dm3] 3R_10781082_SNP [dm6]	G	C	3.048e^-4	0.737	NON_SYNONYMOUS_CODING CG42633 DOWNSTREAM Desi
3L	9258709	3L_9258709_SNP [dm3] 3L_9265609_SNP [dm6]	T	G	3.049e^-4	0.737	INTRON GluRIB
X	5849022	X_5849022_SNP [dm3] X_5954989_SNP [dm6]	T	C	3.053e^-4	0.737	UPSTREAM CG6067 DOWNSTREAM CG6048 INTERGENIC
3L	2367815	3L_2367815_SNP [dm3] 3L_2367815_SNP [dm6]	G	T	3.060e^-4	0.737	DOWNSTREAM CG1317 INTERGENIC
3L	5521552	3L_5521552_SNP [dm3] 3L_5528452_SNP [dm6]	C	G	3.073e^-4	0.737	INTRON Lkr
2L	12506552	2L_12506552_SNP [dm3] 2L_12506552_SNP [dm6]	C	A	3.074e^-4	0.737	INTRON bun
2L	7900689	2L_7900689_SNP [dm3] 2L_7900689_SNP [dm6]	A	G	3.076e^-4	0.737	INTRON Snoo
3L	10208904	3L_10208904_SNP [dm3] 3L_10215804_SNP [dm6]	A	G	3.091e^-4	0.737	SYNONYMOUS_CODING CG8065
2R	9660559	2R_9660559_SNP [dm3] 2R_13773054_SNP [dm6]	A	G	3.093e^-4	0.737	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
3L	8641968	3L_8641968_DEL [dm3] 3L_8648868_DEL [dm6]	GGCA	G	3.099e^-4	0.737	UTR_5_PRIME Arr2 UPSTREAM Pex7 INTRON Pex7
2R	14394796	2R_14394796_SNP [dm3] 2R_18507291_SNP [dm6]	C	T	3.100e^-4	0.737	INTERGENIC
3L	14052304	3L_14052304_SNP [dm3] 3L_14059204_SNP [dm6]	C	A	3.100e^-4	0.737	INTRON CG32138
X	6989605	X_6989605_INS [dm3] X_7095572_INS [dm6]	T	TGCTATT	3.103e^-4	0.737	INTRON Sxl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10572922	2L_10572922_SNP [dm3] 2L_10572922_SNP [dm6]	T	C	3.117e^-4	0.737	INTRON Trim9
3R	11008639	3R_11008639_DEL [dm3] 3R_15182917_DEL [dm6]	ACATA	A	3.133e^-4	0.737	INTRON Gyc88E
3L	12374759	3L_12374759_SNP [dm3] 3L_12381659_SNP [dm6]	T	G	3.133e^-4	0.737	INTRON Ncc69	TF binding site mE1_TFBS_inv
X	3140747	X_3140747_SNP [dm3] X_3246714_SNP [dm6]	G	A	3.136e^-4	0.737	INTRON dnc
3L	9363982	3L_9363982_SNP [dm3] 3L_9370882_SNP [dm6]	T	C	3.139e^-4	0.737	DOWNSTREAM CG4452 & 1 other INTRON Fdxh
3L	12283352	3L_12283352_SNP [dm3] 3L_12290252_SNP [dm6]	G	A	3.143e^-4	0.737	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	7427934	2L_7427934_SNP [dm3] 2L_7427934_SNP [dm6]	C	T	3.145e^-4	0.737	UTR_5_PRIME CG5261 INTRON CG5261
X	15416974	X_15416974_SNP [dm3] X_15522941_SNP [dm6]	A	T	3.147e^-4	0.737	UPSTREAM Ac13E INTRON Ac13E
3L	12011790	3L_12011790_SNP [dm3] 3L_12018690_SNP [dm6]	C	T	3.149e^-4	0.737	INTRON rols
2L	17779078	2L_17779078_SNP [dm3] 2L_17779078_SNP [dm6]	T	C	3.162e^-4	0.737	UPSTREAM CadN INTERGENIC
3L	18840292	3L_18840292_INS [dm3] 3L_18847192_INS [dm6]	G	GCTGTAATGT	3.162e^-4	0.737	UPSTREAM Indy INTERGENIC
3R	8802634	3R_8802634_SNP [dm3] 3R_12976912_SNP [dm6]	A	G	3.168e^-4	0.737	INTRON CG7381
X	9723241	X_9723241_INS [dm3] X_9829208_INS [dm6]	A	ATAGTTT	3.170e^-4	0.737	INTRON CG32698
2L	3831941	2L_3831941_SNP [dm3] 2L_3831941_SNP [dm6]	C	T	3.172e^-4	0.737	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE
X	7323583	X_7323583_SNP [dm3] X_7429550_SNP [dm6]	A	T	3.173e^-4	0.737	INTERGENIC
X	9723275	X_9723275_SNP [dm3] X_9829242_SNP [dm6]	T	C	3.176e^-4	0.737	INTRON CG32698
2L	1196931	2L_1196931_SNP [dm3] 2L_1196931_SNP [dm6]	G	A	3.186e^-4	0.737	DOWNSTREAM CG5001 INTERGENIC
2L	988529	2L_988529_SNP [dm3] 2L_988529_SNP [dm6]	C	T	3.189e^-4	0.737	EXON CR44801	TF binding site mE1_TFBS_chinmo
2L	5522999	2L_5522999_DEL [dm3] 2L_5522999_DEL [dm6]	AA	C	3.193e^-4	0.737	INTRON CG7371	TF binding site mE1_TFBS_sens
X	8403059	X_8403059_SNP [dm3] X_8509026_SNP [dm6]	A	C	3.205e^-4	0.737	UPSTREAM CG33181 INTRON CG33181
2R	11372467	2R_11372467_SNP [dm3] 2R_15484962_SNP [dm6]	G	C	3.207e^-4	0.737	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
X	8287161	X_8287161_SNP [dm3] X_8393128_SNP [dm6]	A	G	3.209e^-4	0.737	INTERGENIC
2R	18723941	2R_18723941_SNP [dm3] 2R_22836418_SNP [dm6]	C	T	3.212e^-4	0.737	SYNONYMOUS_CODING CG12490 UPSTREAM CG9825
2L	3628612	2L_3628612_SNP [dm3] 2L_3628612_SNP [dm6]	G	T	3.217e^-4	0.737	INTRON for	TF binding site BDTNP1_TFBS_twi
3R	27667718	3R_27667718_SNP [dm3] 3R_31841996_SNP [dm6]	T	A	3.217e^-4	0.737	UTR_3_PRIME RhoGAP100F
2R	17117951	2R_17117951_SNP [dm3] 2R_21230446_SNP [dm6]	G	A	3.221e^-4	0.737	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	17880062	2R_17880062_SNP [dm3] 2R_21992557_SNP [dm6]	T	C	3.230e^-4	0.737	INTRON CG34370
2L	13628894	2L_13628894_SNP [dm3] 2L_13628894_SNP [dm6]	T	C	3.231e^-4	0.737	INTRON kuz
3R	22447533	3R_22447533_SNP [dm3] 3R_26621811_SNP [dm6]	T	C	3.233e^-4	0.737	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
X	5848800	X_5848800_SNP [dm3] X_5954767_SNP [dm6]	A	G	3.235e^-4	0.737	UPSTREAM CG6067 DOWNSTREAM CG6048 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	9277786	3L_9277786_SNP [dm3] 3L_9284686_SNP [dm6]	C	T	3.242e^-4	0.737	SYNONYMOUS_CODING GluRIB
3L	18608921	3L_18608921_SNP [dm3] 3L_18615821_SNP [dm6]	C	G	3.244e^-4	0.737	UTR_5_PRIME CG4174 UTR_3_PRIME CG13380 DOWNSTREAM CG13380
2L	17778876	2L_17778876_INS [dm3] 2L_17778876_INS [dm6]	AA	TCCG	3.257e^-4	0.737	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
2R	6938979	2R_6938979_SNP [dm3] 2R_11051474_SNP [dm6]	G	T	3.258e^-4	0.737	INTRON luna
3L	277382	3L_277382_SNP [dm3] 3L_277382_SNP [dm6]	G	C	3.269e^-4	0.737	UPSTREAM RhoGEF3 DOWNSTREAM ttm2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15623961	3L_15623961_SNP [dm3] 3L_15630861_SNP [dm6]	A	T	3.274e^-4	0.737	INTRON comm3
2L	3905948	2L_3905948_SNP [dm3] 2L_3905948_SNP [dm6]	A	G	3.276e^-4	0.737	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18339720	3L_18339720_SNP [dm3] 3L_18346620_SNP [dm6]	A	G	3.280e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11373438	2R_11373438_SNP [dm3] 2R_15485933_SNP [dm6]	A	T	3.286e^-4	0.737	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5712473	2L_5712473_SNP [dm3] 2L_5712473_SNP [dm6]	T	A	3.290e^-4	0.737	INTRON CG7236	TF binding site mE1_TFBS_chinmo
2L	9200040	2L_9200040_DEL [dm3] 2L_9200040_DEL [dm6]	CA	G	3.292e^-4	0.737	INTRON tai
3R	27059542	3R_27059542_SNP [dm3] 3R_31233820_SNP [dm6]	C	A	3.295e^-4	0.737	SYNONYMOUS_CODING CG15564	TF binding site mE1_TFBS_chinmo
X	3140734	X_3140734_DEL [dm3] X_3246701_DEL [dm6]	TA	T	3.296e^-4	0.737	INTRON dnc
3R	13263539	3R_13263539_DEL [dm3] 3R_17437817_DEL [dm6]	TT	T	3.299e^-4	0.737	INTRON CG5873
3R	26101983	3R_26101983_SNP [dm3] 3R_30276261_SNP [dm6]	G	A	3.299e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	1932970	2L_1932970_INS [dm3] 2L_1932970_INS [dm6]	T	TTTAATAAATAATT...	3.307e^-4	0.737	INTRON CG7337
3R	18324842	3R_18324842_INS [dm3] 3R_22499120_INS [dm6]	C	CC	3.312e^-4	0.737	INTRON Octbeta1R
2L	17778813	2L_17778813_SNP [dm3] 2L_17778813_SNP [dm6]	T	A	3.323e^-4	0.737	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
3L	18802231	3L_18802231_SNP [dm3] 3L_18809131_SNP [dm6]	G	A	3.325e^-4	0.737	SYNONYMOUS_CODING CG14073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6119342	X_6119342_DEL [dm3] X_6225309_DEL [dm6]	AA	A	3.332e^-4	0.737	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	3003641	3R_3003641_SNP [dm3] 3R_7177919_SNP [dm6]	T	G	3.334e^-4	0.737	INTRON sas
3R	3827492	3R_3827492_DEL [dm3] 3R_8001770_DEL [dm6]	CTG	C	3.337e^-4	0.737	UTR_5_PRIME CG2698 UPSTREAM Kmn2 DOWNSTREAM CG14463	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	14754512	3R_14754512_SNP [dm3] 3R_18928790_SNP [dm6]	G	A	3.342e^-4	0.737	UPSTREAM CG42613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11399653	2R_11399653_SNP [dm3] 2R_15512148_SNP [dm6]	C	T	3.350e^-4	0.737	SYNONYMOUS_CODING GalNAc-T1
2L	11147936	2L_11147936_SNP [dm3] 2L_11147936_SNP [dm6]	A	T	3.356e^-4	0.737	INTRON Gyc32E
2R	6280318	2R_6280318_SNP [dm3] 2R_10392813_SNP [dm6]	C	T	3.358e^-4	0.737	INTRON CG42732
2R	16336860	2R_16336860_SNP [dm3] 2R_20449355_SNP [dm6]	G	C	3.377e^-4	0.737	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7427893	2L_7427893_SNP [dm3] 2L_7427893_SNP [dm6]	A	G	3.377e^-4	0.737	START_GAINED CG5261 UTR_5_PRIME CG5261 INTRON CG5261
X	8084877	X_8084877_SNP [dm3] X_8190844_SNP [dm6]	G	T	3.379e^-4	0.737	INTRON sdt
2L	10530167	2L_10530167_SNP [dm3] 2L_10530167_SNP [dm6]	T	C	3.383e^-4	0.737	SYNONYMOUS_CODING Lip4
3R	17641645	3R_17641645_SNP [dm3] 3R_21815923_SNP [dm6]	T	A	3.389e^-4	0.737	INTRON CASK	TF binding site mE1_TFBS_sens
3L	4840543	3L_4840543_SNP [dm3] 3L_4840543_SNP [dm6]	A	T	3.393e^-4	0.737	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	9917477	3R_9917477_SNP [dm3] 3R_14091755_SNP [dm6]	T	C	3.393e^-4	0.737	DOWNSTREAM CCHa1 INTRON Npc2b
2L	1969761	2L_1969761_DEL [dm3] 2L_1969761_DEL [dm6]	TG	T	3.396e^-4	0.737	INTRON erm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7803391	3L_7803391_SNP [dm3] 3L_7810291_SNP [dm6]	A	T	3.398e^-4	0.737	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19923237	2R_19923237_SNP [dm3] 2R_24035714_SNP [dm6]	T	C	3.399e^-4	0.737	SYNONYMOUS_CODING MAN1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14319883	2R_14319883_SNP [dm3] 2R_18432378_SNP [dm6]	G	A	3.402e^-4	0.737	INTRON CG30118
2R	3343930	2R_3343930_SNP [dm3] 2R_7456425_SNP [dm6]	G	C	3.419e^-4	0.737	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	1354357	2R_1354357_SNP [dm3] 2R_5466852_SNP [dm6]	G	T	3.419e^-4	0.737	INTERGENIC	transposable element FlyBase
2L	18560851	2L_18560851_SNP [dm3] 2L_18560851_SNP [dm6]	G	T	3.420e^-4	0.737	INTRON Pde11
3L	4836556	3L_4836556_SNP [dm3] 3L_4836556_SNP [dm6]	C	T	3.430e^-4	0.737	INTERGENIC
3R	25181708	3R_25181708_INS [dm3] 3R_29355986_INS [dm6]	A	AGT	3.430e^-4	0.737	DOWNSTREAM CR45547 INTERGENIC
2L	9934249	2L_9934249_SNP [dm3] 2L_9934249_SNP [dm6]	T	A	3.438e^-4	0.737	DOWNSTREAM CG31712 INTERGENIC
3R	14707142	3R_14707142_SNP [dm3] 3R_18881420_SNP [dm6]	A	T	3.442e^-4	0.737	INTERGENIC
3L	7803371	3L_7803371_SNP [dm3] 3L_7810271_SNP [dm6]	T	A	3.442e^-4	0.737	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9074562	2L_9074562_DEL [dm3] 2L_9074562_DEL [dm6]	TGCCCGAT	T	3.443e^-4	0.737	INTERGENIC
2R	19934336	2R_19934336_SNP [dm3] 2R_24046813_SNP [dm6]	G	A	3.451e^-4	0.737	UPSTREAM sei & 1 other DOWNSTREAM gammaSnap1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6119437	X_6119437_SNP [dm3] X_6225404_SNP [dm6]	C	A	3.458e^-4	0.737	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14881577	2R_14881577_SNP [dm3] 2R_18994072_SNP [dm6]	T	A	3.462e^-4	0.737	UPSTREAM snoRNA:abba-a INTRON tn
2R	11373431	2R_11373431_SNP [dm3] 2R_15485926_SNP [dm6]	C	G	3.462e^-4	0.737	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	6119236	X_6119236_SNP [dm3] X_6225203_SNP [dm6]	C	T	3.464e^-4	0.737	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	2273903	3R_2273903_SNP [dm3] 3R_6448181_SNP [dm6]	A	C	3.465e^-4	0.737	UTR_3_PRIME gpp DOWNSTREAM gpp	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	10943919	3R_10943919_SNP [dm3] 3R_15118197_SNP [dm6]	A	T	3.470e^-4	0.737	INTRON CG42788
3L	5798543	3L_5798543_SNP [dm3] 3L_5805443_SNP [dm6]	T	A	3.471e^-4	0.737	INTRON S6k & 1 other	TF binding site mE1_TFBS_cad
2L	17779079	2L_17779079_SNP [dm3] 2L_17779079_SNP [dm6]	G	A	3.476e^-4	0.737	UPSTREAM CadN INTERGENIC
2R	8286392	2R_8286392_SNP [dm3] 2R_12398887_SNP [dm6]	A	T	3.478e^-4	0.737	SYNONYMOUS_CODING CG30048
2L	10629465	2L_10629465_SNP [dm3] 2L_10629465_SNP [dm6]	A	C	3.482e^-4	0.737	UTR_3_PRIME CG7329	TF binding site mE1_TFBS_HSA
3L	18497949	3L_18497949_SNP [dm3] 3L_18504849_SNP [dm6]	T	A	3.484e^-4	0.737	INTERGENIC
3R	26378293	3R_26378293_SNP [dm3] 3R_30552571_SNP [dm6]	T	C	3.486e^-4	0.737	INTRON tmod
2R	11968013	2R_11968013_SNP [dm3] 2R_16080508_SNP [dm6]	G	A	3.487e^-4	0.737	DOWNSTREAM Dg INTERGENIC
2L	17778720	2L_17778720_SNP [dm3] 2L_17778720_SNP [dm6]	G	C	3.493e^-4	0.737	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
2R	11057910	2R_11057910_SNP [dm3] 2R_15170405_SNP [dm6]	G	C	3.499e^-4	0.737	INTRON igl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17950159	2L_17950159_SNP [dm3] 2L_17950159_SNP [dm6]	A	T	3.501e^-4	0.737	INTRON CR44398 EXON CR44397
2R	18227860	2R_18227860_SNP [dm3] 2R_22340355_SNP [dm6]	C	T	3.502e^-4	0.737	INTRON Liprin-gamma	TF binding site mE1_TFBS_chinmo
2L	7487319	2L_7487319_SNP [dm3] 2L_7487319_SNP [dm6]	C	A	3.503e^-4	0.737	INTRON Ziz
2L	17778646	2L_17778646_SNP [dm3] 2L_17778646_SNP [dm6]	G	A	3.505e^-4	0.737	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7581572	2L_7581572_SNP [dm3] 2L_7581572_SNP [dm6]	A	T	3.510e^-4	0.737	UPSTREAM Spn28B INTERGENIC
3L	4528478	3L_4528478_SNP [dm3] 3L_4528478_SNP [dm6]	G	T	3.515e^-4	0.737	INTRON Tie
2L	9269104	2L_9269104_SNP [dm3] 2L_9269104_SNP [dm6]	A	G	3.516e^-4	0.737	INTRON Ggamma30A
2R	12348012	2R_12348012_SNP [dm3] 2R_16460507_SNP [dm6]	C	T	3.519e^-4	0.737	INTERGENIC
2R	11056745	2R_11056745_SNP [dm3] 2R_15169240_SNP [dm6]	A	G	3.520e^-4	0.737	INTRON igl
2R	1364764	2R_1364764_SNP [dm3] 2R_5477259_SNP [dm6]	C	T	3.522e^-4	0.737	INTRON CG30440	transposable element FlyBase
2L	3906643	2L_3906643_SNP [dm3] 2L_3906643_SNP [dm6]	G	A	3.525e^-4	0.737	INTRON fred
3R	27094583	3R_27094583_SNP [dm3] 3R_31268861_SNP [dm6]	C	T	3.527e^-4	0.737	DOWNSTREAM ppk24 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15270700	2R_15270700_SNP [dm3] 2R_19383195_SNP [dm6]	A	T	3.534e^-4	0.737	SYNONYMOUS_CODING CG10073
3R	20349850	3R_20349850_SNP [dm3] 3R_24524128_SNP [dm6]	C	T	3.542e^-4	0.737	UPSTREAM CG13622 & 1 other INTERGENIC
3R	16939762	3R_16939762_SNP [dm3] 3R_21114040_SNP [dm6]	C	T	3.542e^-4	0.737	SYNONYMOUS_CODING Rab11
2L	5070806	2L_5070806_SNP [dm3] 2L_5070806_SNP [dm6]	T	G	3.542e^-4	0.737	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3L	17704980	3L_17704980_SNP [dm3] 3L_17711880_SNP [dm6]	A	C	3.546e^-4	0.737	INTRON Ccn	TF binding site mE1_TFBS_HSA
3L	9867460	3L_9867460_SNP [dm3] 3L_9874360_SNP [dm6]	C	A	3.547e^-4	0.737	INTERGENIC
2L	11339082	2L_11339082_SNP [dm3] 2L_11339082_SNP [dm6]	A	C	3.550e^-4	0.737	UPSTREAM CR44585 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	12011773	3L_12011773_SNP [dm3] 3L_12018673_SNP [dm6]	G	A	3.551e^-4	0.737	INTRON rols
3L	10506414	3L_10506414_SNP [dm3] 3L_10513314_SNP [dm6]	G	A	3.552e^-4	0.737	INTRON A2bp1
X	10968631	X_10968631_SNP [dm3] X_11074598_SNP [dm6]	G	A	3.555e^-4	0.737	SYNONYMOUS_CODING sev	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26761196	3R_26761196_INS [dm3] 3R_30935474_INS [dm6]	C	CTTTCAC	3.564e^-4	0.737	UTR_3_PRIME CG15549
3L	7803401	3L_7803401_SNP [dm3] 3L_7810301_SNP [dm6]	T	C	3.568e^-4	0.737	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3906869	2L_3906869_SNP [dm3] 2L_3906869_SNP [dm6]	A	T	3.570e^-4	0.737	INTRON fred
2R	19108209	2R_19108209_SNP [dm3] 2R_23220686_SNP [dm6]	T	G	3.573e^-4	0.737	INTERGENIC
3L	3801606	3L_3801606_INS [dm3] 3L_3801606_INS [dm6]	T	TAA	3.577e^-4	0.737	UPSTREAM CG32264 INTRON CG32264
2L	4897508	2L_4897508_SNP [dm3] 2L_4897508_SNP [dm6]	G	T	3.581e^-4	0.737	INTRON CG3036	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2568084	3L_2568084_INS [dm3] 3L_2568084_INS [dm6]	T	TTTCT	3.589e^-4	0.737	INTRON msn
2L	13623736	2L_13623736_SNP [dm3] 2L_13623736_SNP [dm6]	C	T	3.592e^-4	0.737	INTRON kuz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11301952	2L_11301952_SNP [dm3] 2L_11301952_SNP [dm6]	A	T	3.609e^-4	0.737	INTERGENIC
2L	6707413	2L_6707413_SNP [dm3] 2L_6707413_SNP [dm6]	G	A	3.614e^-4	0.737	INTRON Tsp
2L	3905940	2L_3905940_SNP [dm3] 2L_3905940_SNP [dm6]	C	T	3.616e^-4	0.737	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15064138	3R_15064138_DEL [dm3] 3R_19238416_DEL [dm6]	TCCCTGAAAA	T	3.616e^-4	0.737	INTRON unc79	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
3R	17956192	3R_17956192_SNP [dm3] 3R_22130470_SNP [dm6]	C	A	3.616e^-4	0.737	INTRON CG42390
3R	7741925	3R_7741925_SNP [dm3] 3R_11916203_SNP [dm6]	A	T	3.625e^-4	0.737	INTRON Cad87A
2R	19917448	2R_19917448_SNP [dm3] 2R_24029925_SNP [dm6]	T	A	3.625e^-4	0.737	NON_SYNONYMOUS_CODING CG3163 DOWNSTREAM CG30172	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	8114438	2R_8114438_SNP [dm3] 2R_12226933_SNP [dm6]	T	C	3.626e^-4	0.737	UPSTREAM CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
3L	6230340	3L_6230340_SNP [dm3] 3L_6237240_SNP [dm6]	T	C	3.629e^-4	0.737	SYNONYMOUS_CODING CG10226	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6848039	2L_6848039_INS [dm3] 2L_6848039_INS [dm6]	C	CGC	3.632e^-4	0.737	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	11346118	2R_11346118_SNP [dm3] 2R_15458613_SNP [dm6]	G	A	3.637e^-4	0.737	INTRON CG43729
3L	9811056	3L_9811056_SNP [dm3] 3L_9817956_SNP [dm6]	A	G	3.643e^-4	0.737	INTRON CG43897
3R	19768178	3R_19768178_SNP [dm3] 3R_23942456_SNP [dm6]	C	A	3.646e^-4	0.737	INTRON Gdh	TF binding site BDTNP1_TFBS_twi
X	12359605	X_12359605_SNP [dm3] X_12465572_SNP [dm6]	A	C	3.646e^-4	0.737	INTRON CG42258
2R	15940207	2R_15940207_SNP [dm3] 2R_20052702_SNP [dm6]	C	T	3.651e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4019291	X_4019291_SNP [dm3] X_4125258_SNP [dm6]	T	G	3.651e^-4	0.737	SYNONYMOUS_CODING tyf	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11216616	X_11216616_SNP [dm3] X_11322583_SNP [dm6]	G	A	3.654e^-4	0.737	UPSTREAM sisA INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	11924185	X_11924185_SNP [dm3] X_12030152_SNP [dm6]	G	T	3.654e^-4	0.737	SYNONYMOUS_CODING Cyp311a1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	12754824	3R_12754824_SNP [dm3] 3R_16929102_SNP [dm6]	T	C	3.660e^-4	0.737	UTR_3_PRIME Abd-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4264261	2L_4264261_SNP [dm3] 2L_4264261_SNP [dm6]	C	A	3.660e^-4	0.737	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	20771746	3L_20771746_SNP [dm3] 3L_20778646_SNP [dm6]	T	A	3.662e^-4	0.737	UPSTREAM Pex14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	18500843	2L_18500843_SNP [dm3] 2L_18500843_SNP [dm6]	G	A	3.663e^-4	0.737	UTR_5_PRIME kon	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9876649	2L_9876649_SNP [dm3] 2L_9876649_SNP [dm6]	G	A	3.664e^-4	0.737	INTRON nAChRalpha6
2L	17941685	2L_17941685_SNP [dm3] 2L_17941685_SNP [dm6]	A	C	3.672e^-4	0.737	INTERGENIC
3L	1272636	3L_1272636_SNP [dm3] 3L_1272636_SNP [dm6]	C	G	3.679e^-4	0.737	INTRON CG9134	TF binding site mE1_TFBS_cad
2L	19129622	2L_19129622_SNP [dm3] 2L_19129622_SNP [dm6]	T	A	3.681e^-4	0.737	UTR_3_PRIME Aats-asn DOWNSTREAM Aats-asn & 1 other	TF binding site mE1_TFBS_cad
3R	26115624	3R_26115624_SNP [dm3] 3R_30289902_SNP [dm6]	T	G	3.686e^-4	0.737	INTRON hdc
2L	9079138	2L_9079138_SNP [dm3] 2L_9079138_SNP [dm6]	T	G	3.687e^-4	0.737	INTERGENIC
3L	17156863	3L_17156863_SNP [dm3] 3L_17163763_SNP [dm6]	T	C	3.689e^-4	0.737	INTRON Rbp6
X	5050098	X_5050098_DEL [dm3] X_5156065_DEL [dm6]	GG	G	3.693e^-4	0.737	INTRON rg & 1 other
2L	3545739	2L_3545739_SNP [dm3] 2L_3545739_SNP [dm6]	T	C	3.698e^-4	0.737	SYNONYMOUS_CODING drm	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	20349780	3R_20349780_SNP [dm3] 3R_24524058_SNP [dm6]	G	T	3.699e^-4	0.737	UPSTREAM CG13622 & 1 other INTERGENIC
3L	18806192	3L_18806192_SNP [dm3] 3L_18813092_SNP [dm6]	T	C	3.714e^-4	0.738	INTRON CG14073
3L	20771738	3L_20771738_SNP [dm3] 3L_20778638_SNP [dm6]	T	C	3.715e^-4	0.738	UPSTREAM Pex14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	9893068	3L_9893068_SNP [dm3] 3L_9899968_SNP [dm6]	A	G	3.715e^-4	0.738	UTR_5_PRIME nudE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	5849031	X_5849031_SNP [dm3] X_5954998_SNP [dm6]	A	G	3.720e^-4	0.738	UPSTREAM CG6067 DOWNSTREAM CG6048 INTERGENIC
3R	8800331	3R_8800331_SNP [dm3] 3R_12974609_SNP [dm6]	A	C	3.723e^-4	0.738	UPSTREAM CG7381 INTRON CG7381
3L	8902495	3L_8902495_SNP [dm3] 3L_8909395_SNP [dm6]	T	A	3.734e^-4	0.739	SYNONYMOUS_CODING mfr UTR_5_PRIME mfr
2L	5487191	2L_5487191_SNP [dm3] 2L_5487191_SNP [dm6]	T	A	3.741e^-4	0.739	EXON CR45287	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1272727	3L_1272727_SNP [dm3] 3L_1272727_SNP [dm6]	T	A	3.747e^-4	0.739	INTRON CG9134	TF binding site mE1_TFBS_cad
2R	15408242	2R_15408242_SNP [dm3] 2R_19520737_SNP [dm6]	G	A	3.748e^-4	0.739	UTR_3_PRIME sm
2R	14394943	2R_14394943_SNP [dm3] 2R_18507438_SNP [dm6]	G	A	3.752e^-4	0.739	INTERGENIC
2L	13623955	2L_13623955_SNP [dm3] 2L_13623955_SNP [dm6]	G	A	3.755e^-4	0.739	INTRON kuz	TF binding site mE1_TFBS_HSA
2R	13529207	2R_13529207_SNP [dm3] 2R_17641702_SNP [dm6]	C	T	3.774e^-4	0.739	INTERGENIC
2L	4680490	2L_4680490_SNP [dm3] 2L_4680490_SNP [dm6]	C	A	3.774e^-4	0.739	INTERGENIC
3R	16939738	3R_16939738_SNP [dm3] 3R_21114016_SNP [dm6]	C	T	3.778e^-4	0.739	SYNONYMOUS_CODING Rab11
2R	17864011	2R_17864011_SNP [dm3] 2R_21976506_SNP [dm6]	T	A	3.781e^-4	0.739	UPSTREAM Gr58c DOWNSTREAM CG9304 INTERGENIC
2L	5070807	2L_5070807_SNP [dm3] 2L_5070807_SNP [dm6]	A	T	3.786e^-4	0.739	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	13236891	2L_13236891_SNP [dm3] 2L_13236891_SNP [dm6]	A	G	3.788e^-4	0.739	INTRON CG5867
2L	1196933	2L_1196933_SNP [dm3] 2L_1196933_SNP [dm6]	A	G	3.788e^-4	0.739	DOWNSTREAM CG5001 INTERGENIC
3L	1690640	3L_1690640_SNP [dm3] 3L_1690640_SNP [dm6]	T	A	3.789e^-4	0.739	INTRON CG7991
3L	12494166	3L_12494166_SNP [dm3] 3L_12501066_SNP [dm6]	C	T	3.793e^-4	0.739	UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
X	20469295	X_20469295_SNP [dm3] X_20598268_SNP [dm6]	C	T	3.796e^-4	0.739	INTRON RunxA
3R	27237993	3R_27237993_SNP [dm3] 3R_31412271_SNP [dm6]	A	C	3.796e^-4	0.739	INTRON Gprk2	TF binding site mE1_TFBS_cad
2L	11966532	2L_11966532_SNP [dm3] 2L_11966532_SNP [dm6]	G	T	3.797e^-4	0.739	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	15121463	2R_15121463_SNP [dm3] 2R_19233958_SNP [dm6]	C	T	3.817e^-4	0.739	INTRON cora
3L	18453915	3L_18453915_SNP [dm3] 3L_18460815_SNP [dm6]	C	A	3.817e^-4	0.739	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	17956176	3R_17956176_SNP [dm3] 3R_22130454_SNP [dm6]	A	T	3.824e^-4	0.739	SPLICE_SITE_REGION CG42390 INTRON CG42390
3R	14184710	3R_14184710_DEL [dm3] 3R_18358988_DEL [dm6]	AA	A	3.827e^-4	0.739	INTRON CG15803
2L	17778783	2L_17778783_SNP [dm3] 2L_17778783_SNP [dm6]	T	A	3.827e^-4	0.739	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
2L	5276754	2L_5276754_DEL [dm3] 2L_5276754_DEL [dm6]	ATGCT	A	3.829e^-4	0.739	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14061695	2L_14061695_SNP [dm3] 2L_14061695_SNP [dm6]	A	T	3.841e^-4	0.739	NON_SYNONYMOUS_CODING nAChRalpha5
3L	20771757	3L_20771757_SNP [dm3] 3L_20778657_SNP [dm6]	C	T	3.844e^-4	0.739	UPSTREAM Pex14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	9912224	3L_9912224_SNP [dm3] 3L_9919124_SNP [dm6]	G	C	3.846e^-4	0.739	INTRON CG34356
3L	7745092	3L_7745092_SNP [dm3] 3L_7751992_SNP [dm6]	T	A	3.848e^-4	0.739	INTRON CG32373	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	19931696	2R_19931696_SNP [dm3] 2R_24044173_SNP [dm6]	G	A	3.849e^-4	0.739	SYNONYMOUS_CODING IntS1 DOWNSTREAM tsr	TF binding site mE1_TFBS_sens
3L	11256257	3L_11256257_SNP [dm3] 3L_11263157_SNP [dm6]	C	T	3.854e^-4	0.739	INTERGENIC
3R	14523018	3R_14523018_SNP [dm3] 3R_18697296_SNP [dm6]	A	C	3.859e^-4	0.739	INTERGENIC
3L	11940306	3L_11940306_DEL [dm3] 3L_11947206_DEL [dm6]	TAGCCAAAT	T	3.862e^-4	0.739	UPSTREAM CG7252 INTERGENIC
2L	7780044	2L_7780044_SNP [dm3] 2L_7780044_SNP [dm6]	G	A	3.869e^-4	0.739	UPSTREAM Uro INTERGENIC
3R	18474256	3R_18474256_SNP [dm3] 3R_22648534_SNP [dm6]	T	C	3.870e^-4	0.739	INTRON CG45058
3L	10693228	3L_10693228_SNP [dm3] 3L_10700128_SNP [dm6]	G	T	3.872e^-4	0.739	INTERGENIC
2L	9914811	2L_9914811_INS [dm3] 2L_9914811_INS [dm6]	T	TAAAT	3.873e^-4	0.739	UTR_3_PRIME Srp54 UPSTREAM yip2
3L	20771748	3L_20771748_SNP [dm3] 3L_20778648_SNP [dm6]	A	C	3.877e^-4	0.739	UPSTREAM Pex14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	5499574	2L_5499574_SNP [dm3] 2L_5499574_SNP [dm6]	T	G	3.881e^-4	0.739	INTERGENIC
2L	18328314	2L_18328314_SNP [dm3] 2L_18328314_SNP [dm6]	T	C	3.888e^-4	0.739	INTRON Fas3
2R	16110286	2R_16110286_SNP [dm3] 2R_20222781_SNP [dm6]	C	A	3.889e^-4	0.739	UPSTREAM CR45423 INTERGENIC
3L	10245794	3L_10245794_SNP [dm3] 3L_10252694_SNP [dm6]	A	G	3.891e^-4	0.739	INTERGENIC
3R	18125627	3R_18125627_SNP [dm3] 3R_22299905_SNP [dm6]	C	T	3.893e^-4	0.739	INTRON CG7084
X	16598544	X_16598544_SNP [dm3] X_16704511_SNP [dm6]	A	C	3.899e^-4	0.739	UPSTREAM CG9673 INTRON CG4678 & 1 other
2R	15092946	2R_15092946_SNP [dm3] 2R_19205441_SNP [dm6]	A	C	3.900e^-4	0.739	INTRON hppy
2R	16402818	2R_16402818_SNP [dm3] 2R_20515313_SNP [dm6]	G	A	3.906e^-4	0.739	INTERGENIC
3L	16907434	3L_16907434_SNP [dm3] 3L_16914334_SNP [dm6]	G	T	3.914e^-4	0.739	INTRON Lmpt
X	10137015	X_10137015_SNP [dm3] X_10242982_SNP [dm6]	T	C	3.917e^-4	0.739	INTRON Hk
2L	1664893	2L_1664893_SNP [dm3] 2L_1664893_SNP [dm6]	G	A	3.918e^-4	0.739	INTRON chinmo
2R	19362095	2R_19362095_SNP [dm3] 2R_23474572_SNP [dm6]	G	T	3.929e^-4	0.74	UPSTREAM Or59c INTRON CG43795
3R	19640066	3R_19640066_SNP [dm3] 3R_23814344_SNP [dm6]	C	T	3.931e^-4	0.74	SYNONYMOUS_CODING eIF4G2 INTRON CG34355 & 1 other
X	11233623	X_11233623_SNP [dm3] X_11339590_SNP [dm6]	T	G	3.934e^-4	0.74	UPSTREAM Kap3 & 1 other INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18455699	2R_18455699_SNP [dm3] 2R_22568194_SNP [dm6]	A	G	3.940e^-4	0.74	INTRON dnr1	TF binding site mE1_TFBS_Trl
X	8287164	X_8287164_SNP [dm3] X_8393131_SNP [dm6]	A	T	3.946e^-4	0.74	INTERGENIC
2L	7788745	2L_7788745_SNP [dm3] 2L_7788745_SNP [dm6]	T	C	3.948e^-4	0.74	INTRON CG7149

By genomic position
Variant impact
Gene name

lsm_Week3_Fecundity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results