DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.232e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.7074	0.095

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2407 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	14795131	2L_14795131_DEL [dm3] 2L_14795131_DEL [dm6]	CC	C	2.951e^-7	0.553	UTR_3_PRIME CG18420
3R	26176018	3R_26176018_SNP [dm3] 3R_30350296_SNP [dm6]	C	A	7.866e^-7	0.627	INTRON hdc
3L	12374733	3L_12374733_SNP [dm3] 3L_12381633_SNP [dm6]	T	G	1.002e^-6	0.627	INTRON Ncc69	TF binding site mE1_TFBS_inv
3R	14094242	3R_14094242_SNP [dm3] 3R_18268520_SNP [dm6]	T	C	1.489e^-6	0.636	INTRON CG18599
3R	26088906	3R_26088906_SNP [dm3] 3R_30263184_SNP [dm6]	C	T	1.894e^-6	0.636	INTERGENIC
3R	14094271	3R_14094271_SNP [dm3] 3R_18268549_SNP [dm6]	A	G	2.864e^-6	0.636	INTRON CG18599
2L	3378046	2L_3378046_SNP [dm3] 2L_3378046_SNP [dm6]	A	T	2.890e^-6	0.636	SYNONYMOUS_CODING Ptpa	TF binding site mE1_TFBS_sens
3L	2545668	3L_2545668_DEL [dm3] 3L_2545668_DEL [dm6]	TAAATTAAAGGCTTTGT...	T	3.037e^-6	0.636	INTRON Spn
2R	12861426	2R_12861426_SNP [dm3] 2R_16973921_SNP [dm6]	T	C	3.216e^-6	0.636	UPSTREAM Cbp53E INTERGENIC
3L	18352450	3L_18352450_SNP [dm3] 3L_18359350_SNP [dm6]	T	A	3.392e^-6	0.636	INTERGENIC
2L	7900509	2L_7900509_SNP [dm3] 2L_7900509_SNP [dm6]	A	C	4.675e^-6	0.658	INTRON Snoo
3R	25476842	3R_25476842_SNP [dm3] 3R_29651120_SNP [dm6]	C	T	5.184e^-6	0.658	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
3L	4726377	3L_4726377_SNP [dm3] 3L_4726377_SNP [dm6]	T	C	5.398e^-6	0.658	INTRON RhoGEF64C
3L	7063391	3L_7063391_SNP [dm3] 3L_7070291_SNP [dm6]	G	A	5.768e^-6	0.658	INTRON CG8641
3L	1081436	3L_1081436_SNP [dm3] 3L_1081436_SNP [dm6]	A	G	5.867e^-6	0.658	INTRON bab1
3L	12374674	3L_12374674_DEL [dm3] 3L_12381574_DEL [dm6]	GAAATTCTTTAACAAGGCGA...	G	5.975e^-6	0.658	INTRON Ncc69	TF binding site mE1_TFBS_inv
X	3483222	X_3483222_SNP [dm3] X_3589189_SNP [dm6]	T	A	6.120e^-6	0.658	INTRON AstA-R1
X	10625028	X_10625028_INS [dm3] X_10730995_INS [dm6]	T	TC	6.316e^-6	0.658	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	3346733	2R_3346733_DEL [dm3] 2R_7459228_DEL [dm6]	TA	T	7.234e^-6	0.683	UPSTREAM Inos DOWNSTREAM CG11141 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7900233	2L_7900233_SNP [dm3] 2L_7900233_SNP [dm6]	C	T	7.636e^-6	0.683	INTRON Snoo
X	5872642	X_5872642_SNP [dm3] X_5978609_SNP [dm6]	G	A	7.646e^-6	0.683	INTRON Grip
3L	11649398	3L_11649398_SNP [dm3] 3L_11656298_SNP [dm6]	T	C	8.319e^-6	0.688	UPSTREAM mir-274 INTRON CG32085
3L	12374566	3L_12374566_SNP [dm3] 3L_12381466_SNP [dm6]	G	T	8.432e^-6	0.688	INTRON Ncc69	TF binding site mE1_TFBS_inv
3L	12374579	3L_12374579_SNP [dm3] 3L_12381479_SNP [dm6]	G	A	9.157e^-6	0.705	INTRON Ncc69	TF binding site mE1_TFBS_inv
3L	10369405	3L_10369405_SNP [dm3] 3L_10376305_SNP [dm6]	T	A	1.094e^-5	0.705	INTERGENIC
2L	12588032	2L_12588032_SNP [dm3] 2L_12588032_SNP [dm6]	C	T	1.113e^-5	0.705	START_GAINED nub UTR_5_PRIME nub	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
2L	7900200	2L_7900200_SNP [dm3] 2L_7900200_SNP [dm6]	T	C	1.206e^-5	0.705	INTRON Snoo
X	3141187	X_3141187_SNP [dm3] X_3247154_SNP [dm6]	T	A	1.246e^-5	0.705	INTRON dnc
2L	10530153	2L_10530153_SNP [dm3] 2L_10530153_SNP [dm6]	T	C	1.341e^-5	0.705	SYNONYMOUS_CODING Lip4
2L	7900235	2L_7900235_SNP [dm3] 2L_7900235_SNP [dm6]	C	G	1.390e^-5	0.705	INTRON Snoo
X	3141181	X_3141181_SNP [dm3] X_3247148_SNP [dm6]	C	A	1.469e^-5	0.705	INTRON dnc
3R	3006133	3R_3006133_SNP [dm3] 3R_7180411_SNP [dm6]	G	A	1.635e^-5	0.705	SYNONYMOUS_CODING sas INTRON sas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9637295	2R_9637295_SNP [dm3] 2R_13749790_SNP [dm6]	G	A	1.645e^-5	0.705	DOWNSTREAM fas INTERGENIC
3L	12494005	3L_12494005_SNP [dm3] 3L_12500905_SNP [dm6]	C	T	1.648e^-5	0.705	SYNONYMOUS_CODING CG10638 UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
X	5736658	X_5736658_SNP [dm3] X_5842625_SNP [dm6]	C	T	1.749e^-5	0.705	INTERGENIC
X	18464207	X_18464207_SNP [dm3] X_18570174_SNP [dm6]	A	C	1.778e^-5	0.705	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3R	11269036	3R_11269036_SNP [dm3] 3R_15443314_SNP [dm6]	T	A	1.804e^-5	0.705	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad
3L	12374767	3L_12374767_SNP [dm3] 3L_12381667_SNP [dm6]	T	C	1.851e^-5	0.705	INTRON Ncc69	TF binding site mE1_TFBS_inv
2L	13236971	2L_13236971_SNP [dm3] 2L_13236971_SNP [dm6]	G	A	1.872e^-5	0.705	INTRON CG5867
2R	17868698	2R_17868698_SNP [dm3] 2R_21981193_SNP [dm6]	T	C	1.928e^-5	0.705	DOWNSTREAM Gr58a INTERGENIC
X	6121036	X_6121036_SNP [dm3] X_6227003_SNP [dm6]	C	T	1.971e^-5	0.705	SYNONYMOUS_CODING CG14446	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10568445	X_10568445_SNP [dm3] X_10674412_SNP [dm6]	A	C	1.997e^-5	0.705	UPSTREAM CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19573478	2R_19573478_SNP [dm3] 2R_23685955_SNP [dm6]	C	T	2.043e^-5	0.705	UPSTREAM l_2_efl INTRON St3
2L	12587759	2L_12587759_SNP [dm3] 2L_12587759_SNP [dm6]	A	T	2.052e^-5	0.705	UTR_5_PRIME nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11817318	2R_11817318_DEL [dm3] 2R_15929813_DEL [dm6]	GA	G	2.069e^-5	0.705	INTRON bdg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26871778	3R_26871778_SNP [dm3] 3R_31046056_SNP [dm6]	G	A	2.110e^-5	0.705	UPSTREAM CG33920 INTRON CanA1	TF binding site BDTNP1_TFBS_prd
2L	4132014	2L_4132014_SNP [dm3] 2L_4132014_SNP [dm6]	C	T	2.252e^-5	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14269828	3L_14269828_SNP [dm3] 3L_14276728_SNP [dm6]	T	C	2.314e^-5	0.705	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	17775496	2L_17775496_SNP [dm3] 2L_17775496_SNP [dm6]	T	A	2.342e^-5	0.705	INTRON CadN
2L	2806636	2L_2806636_SNP [dm3] 2L_2806636_SNP [dm6]	C	A	2.346e^-5	0.705	INTRON daw
2L	7818857	2L_7818857_SNP [dm3] 2L_7818857_SNP [dm6]	C	G	2.374e^-5	0.705	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5342912	X_5342912_SNP [dm3] X_5448879_SNP [dm6]	G	A	2.391e^-5	0.705	INTRON SPR
3R	26667352	3R_26667352_SNP [dm3] 3R_30841630_SNP [dm6]	T	A	2.403e^-5	0.705	UTR_3_PRIME CG15544
X	6119168	X_6119168_SNP [dm3] X_6225135_SNP [dm6]	C	G	2.435e^-5	0.705	UTR_5_PRIME sqh UPSTREAM sqh & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12374656	3L_12374656_SNP [dm3] 3L_12381556_SNP [dm6]	C	T	2.438e^-5	0.705	INTRON Ncc69	TF binding site mE1_TFBS_inv
2R	12021871	2R_12021871_SNP [dm3] 2R_16134366_SNP [dm6]	G	A	2.555e^-5	0.705	INTRON spin	TF binding site mE1_TFBS_inv
X	3483341	X_3483341_DEL [dm3] X_3589308_DEL [dm6]	AACCAAA	A	2.580e^-5	0.705	INTRON AstA-R1
X	3483218	X_3483218_SNP [dm3] X_3589185_SNP [dm6]	G	C	2.616e^-5	0.705	INTRON AstA-R1
3R	18129037	3R_18129037_SNP [dm3] 3R_22303315_SNP [dm6]	A	G	2.655e^-5	0.705	INTRON CG7084
2R	9679611	2R_9679611_DEL [dm3] 2R_13792106_DEL [dm6]	CC	C	2.661e^-5	0.705	EXON CR43811
3R	14094198	3R_14094198_SNP [dm3] 3R_18268476_SNP [dm6]	G	A	2.678e^-5	0.705	INTRON CG18599
2L	448813	2L_448813_SNP [dm3] 2L_448813_SNP [dm6]	T	G	2.693e^-5	0.705	UTR_3_PRIME crq DOWNSTREAM ex
X	12584129	X_12584129_SNP [dm3] X_12690096_SNP [dm6]	C	A	2.713e^-5	0.705	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_kni BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7994399	2L_7994399_SNP [dm3] 2L_7994399_SNP [dm6]	T	C	2.758e^-5	0.705	UTR_3_PRIME CG7227 UPSTREAM pes & 1 other DOWNSTREAM CG7227	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_Trl
3R	17293564	3R_17293564_SNP [dm3] 3R_21467842_SNP [dm6]	C	A	2.759e^-5	0.705	INTERGENIC
3R	17293574	3R_17293574_SNP [dm3] 3R_21467852_SNP [dm6]	A	G	2.759e^-5	0.705	INTERGENIC
3R	17293596	3R_17293596_SNP [dm3] 3R_21467874_SNP [dm6]	T	A	2.759e^-5	0.705	INTERGENIC
2L	9286685	2L_9286685_SNP [dm3] 2L_9286685_SNP [dm6]	T	C	2.822e^-5	0.705	INTRON Ggamma30A
3L	5521724	3L_5521724_SNP [dm3] 3L_5528624_SNP [dm6]	G	A	2.829e^-5	0.705	INTRON Lkr
3L	12374615	3L_12374615_SNP [dm3] 3L_12381515_SNP [dm6]	A	G	2.850e^-5	0.705	INTRON Ncc69	TF binding site mE1_TFBS_inv
3L	12374596	3L_12374596_SNP [dm3] 3L_12381496_SNP [dm6]	C	A	2.866e^-5	0.705	INTRON Ncc69	TF binding site mE1_TFBS_inv
3R	17293551	3R_17293551_SNP [dm3] 3R_21467829_SNP [dm6]	T	G	2.920e^-5	0.705	INTERGENIC
X	5342901	X_5342901_SNP [dm3] X_5448868_SNP [dm6]	C	T	2.978e^-5	0.705	INTRON SPR
3R	17293603	3R_17293603_SNP [dm3] 3R_21467881_SNP [dm6]	C	T	3.071e^-5	0.705	INTERGENIC
3R	23673604	3R_23673604_SNP [dm3] 3R_27847882_SNP [dm6]	G	A	3.099e^-5	0.705	DOWNSTREAM Or98a INTRON CG34353
3L	16036130	3L_16036130_SNP [dm3] 3L_16043030_SNP [dm6]	C	T	3.153e^-5	0.705	UTR_5_PRIME th UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv
3L	12374768	3L_12374768_SNP [dm3] 3L_12381668_SNP [dm6]	G	C	3.167e^-5	0.705	INTRON Ncc69	TF binding site mE1_TFBS_inv
2L	12588392	2L_12588392_SNP [dm3] 2L_12588392_SNP [dm6]	A	G	3.174e^-5	0.705	INTRON nub
X	20443973	X_20443973_SNP [dm3] X_20572946_SNP [dm6]	T	G	3.213e^-5	0.705	INTERGENIC
2L	9888653	2L_9888653_SNP [dm3] 2L_9888653_SNP [dm6]	A	C	3.251e^-5	0.705	INTRON FKBP59	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19768156	3R_19768156_SNP [dm3] 3R_23942434_SNP [dm6]	T	G	3.260e^-5	0.705	INTRON Gdh	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6119481	X_6119481_SNP [dm3] X_6225448_SNP [dm6]	T	G	3.281e^-5	0.705	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
3L	12374717	3L_12374717_SNP [dm3] 3L_12381617_SNP [dm6]	A	T	3.308e^-5	0.705	INTRON Ncc69	TF binding site mE1_TFBS_inv
X	10892563	X_10892563_SNP [dm3] X_10998530_SNP [dm6]	G	A	3.321e^-5	0.705	INTRON CG42339
3L	12374759	3L_12374759_SNP [dm3] 3L_12381659_SNP [dm6]	T	G	3.455e^-5	0.705	INTRON Ncc69	TF binding site mE1_TFBS_inv
2L	4897079	2L_4897079_SNP [dm3] 2L_4897079_SNP [dm6]	A	G	3.468e^-5	0.705	INTRON CG3036
3R	18636393	3R_18636393_SNP [dm3] 3R_22810671_SNP [dm6]	T	C	3.489e^-5	0.705	INTERGENIC
2L	1969770	2L_1969770_DEL [dm3] 2L_1969770_DEL [dm6]	AC	A	3.523e^-5	0.705	INTRON erm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4132068	2L_4132068_SNP [dm3] 2L_4132068_SNP [dm6]	T	G	3.576e^-5	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	3007748	3R_3007748_SNP [dm3] 3R_7182026_SNP [dm6]	A	C	3.581e^-5	0.705	SYNONYMOUS_CODING sas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17046469	3L_17046469_SNP [dm3] 3L_17053369_SNP [dm6]	G	T	3.589e^-5	0.705	INTRON rogdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16618743	2R_16618743_SNP [dm3] 2R_20731238_SNP [dm6]	C	T	3.607e^-5	0.705	UPSTREAM CG13442 INTRON dpr
2R	17929699	2R_17929699_SNP [dm3] 2R_22042194_SNP [dm6]	A	G	3.646e^-5	0.705	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	16643013	2R_16643013_SNP [dm3] 2R_20755508_SNP [dm6]	A	T	3.695e^-5	0.705	INTERGENIC
2L	3377824	2L_3377824_SNP [dm3] 2L_3377824_SNP [dm6]	T	C	3.834e^-5	0.705	INTRON Ptpa	TF binding site mE1_TFBS_sens
3R	19649746	3R_19649746_SNP [dm3] 3R_23824024_SNP [dm6]	T	C	3.852e^-5	0.705	INTRON CG34355
2L	5499989	2L_5499989_SNP [dm3] 2L_5499989_SNP [dm6]	G	T	3.852e^-5	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12288574	X_12288574_SNP [dm3] X_12394541_SNP [dm6]	C	T	3.863e^-5	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12702451	2L_12702451_SNP [dm3] 2L_12702451_SNP [dm6]	C	A	3.873e^-5	0.705	SYNONYMOUS_CODING CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	7281732	2L_7281732_SNP [dm3] 2L_7281732_SNP [dm6]	C	T	3.889e^-5	0.705	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	12861254	2R_12861254_SNP [dm3] 2R_16973749_SNP [dm6]	C	T	3.897e^-5	0.705	UPSTREAM Cbp53E INTERGENIC
2R	18290522	2R_18290522_SNP [dm3] 2R_22403017_SNP [dm6]	G	T	3.964e^-5	0.705	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	12981081	3L_12981081_SNP [dm3] 3L_12987981_SNP [dm6]	T	A	3.984e^-5	0.705	INTERGENIC
3L	9258817	3L_9258817_SNP [dm3] 3L_9265717_SNP [dm6]	A	C	4.046e^-5	0.705	INTRON GluRIB
3R	13242326	3R_13242326_SNP [dm3] 3R_17416604_SNP [dm6]	T	A	4.049e^-5	0.705	UPSTREAM CG33333 DOWNSTREAM CG5866 INTERGENIC
2R	9474315	2R_9474315_SNP [dm3] 2R_13586810_SNP [dm6]	A	G	4.098e^-5	0.705	INTRON CG6191 & 1 other
2R	16274016	2R_16274016_SNP [dm3] 2R_20386511_SNP [dm6]	T	C	4.153e^-5	0.705	INTERGENIC
2L	12718175	2L_12718175_SNP [dm3] 2L_12718175_SNP [dm6]	T	A	4.171e^-5	0.705	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
2L	17954078	2L_17954078_DEL [dm3] 2L_17954078_DEL [dm6]	GATTGCAG	G	4.249e^-5	0.705	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	12588348	2L_12588348_SNP [dm3] 2L_12588348_SNP [dm6]	A	T	4.277e^-5	0.705	INTRON nub
3L	11649339	3L_11649339_SNP [dm3] 3L_11656239_SNP [dm6]	A	T	4.293e^-5	0.705	UPSTREAM mir-274 INTRON CG32085
X	5736761	X_5736761_SNP [dm3] X_5842728_SNP [dm6]	T	C	4.326e^-5	0.705	INTERGENIC
2R	15408242	2R_15408242_SNP [dm3] 2R_19520737_SNP [dm6]	G	A	4.354e^-5	0.705	UTR_3_PRIME sm
2R	16273922	2R_16273922_SNP [dm3] 2R_20386417_SNP [dm6]	T	A	4.395e^-5	0.705	INTERGENIC
2R	16273933	2R_16273933_SNP [dm3] 2R_20386428_SNP [dm6]	T	G	4.403e^-5	0.705	INTERGENIC
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	4.422e^-5	0.705	INTRON Cad87A
3R	15065684	3R_15065684_SNP [dm3] 3R_19239962_SNP [dm6]	A	G	4.468e^-5	0.705	INTRON unc79
X	6119463	X_6119463_INS [dm3] X_6225430_INS [dm6]	T	TA	4.507e^-5	0.705	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
X	12288572	X_12288572_SNP [dm3] X_12394539_SNP [dm6]	G	A	4.507e^-5	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12097475	2L_12097475_SNP [dm3] 2L_12097475_SNP [dm6]	T	G	4.508e^-5	0.705	NON_SYNONYMOUS_CODING Mt2 UPSTREAM CG6712 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	9915819	2L_9915819_SNP [dm3] 2L_9915819_SNP [dm6]	G	T	4.559e^-5	0.707	DOWNSTREAM Srp54 INTRON yip2
X	6119175	X_6119175_SNP [dm3] X_6225142_SNP [dm6]	T	C	4.833e^-5	0.732	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	7898567	3L_7898567_SNP [dm3] 3L_7905467_SNP [dm6]	A	C	4.916e^-5	0.732	INTRON pbl
3L	5522223	3L_5522223_SNP [dm3] 3L_5529123_SNP [dm6]	C	T	4.958e^-5	0.732	UTR_5_PRIME Lkr
3L	5997712	3L_5997712_SNP [dm3] 3L_6004612_SNP [dm6]	C	T	5.162e^-5	0.732	INTRON PVRAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18914580	2R_18914580_SNP [dm3] 2R_23027057_SNP [dm6]	A	C	5.213e^-5	0.732	INTRON twi & 1 other
2R	11372415	2R_11372415_INS [dm3] 2R_15484910_INS [dm6]	G	GTCTTCG	5.218e^-5	0.732	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2R	19931882	2R_19931882_SNP [dm3] 2R_24044359_SNP [dm6]	A	T	5.220e^-5	0.732	UTR_3_PRIME IntS1 DOWNSTREAM tsr	TF binding site BDTNP1_TFBS_dl
3L	8977593	3L_8977593_SNP [dm3] 3L_8984493_SNP [dm6]	G	T	5.247e^-5	0.732	SYNONYMOUS_CODING Galk	TF binding site mE1_TFBS_chinmo
3R	2845681	3R_2845681_SNP [dm3] 3R_7019959_SNP [dm6]	G	C	5.258e^-5	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12588241	2L_12588241_SNP [dm3] 2L_12588241_SNP [dm6]	T	A	5.262e^-5	0.732	INTRON nub
X	6120045	X_6120045_SNP [dm3] X_6226012_SNP [dm6]	T	A	5.266e^-5	0.732	UTR_5_PRIME CG14446 UPSTREAM sqh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	16443782	2R_16443782_SNP [dm3] 2R_20556277_SNP [dm6]	C	T	5.326e^-5	0.732	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16273939	2R_16273939_SNP [dm3] 2R_20386434_SNP [dm6]	A	G	5.352e^-5	0.732	INTERGENIC
2R	16273942	2R_16273942_SNP [dm3] 2R_20386437_SNP [dm6]	T	A	5.352e^-5	0.732	INTERGENIC
2L	12502809	2L_12502809_SNP [dm3] 2L_12502809_SNP [dm6]	T	G	5.382e^-5	0.732	INTRON bun
2R	11967906	2R_11967906_SNP [dm3] 2R_16080401_SNP [dm6]	T	A	5.387e^-5	0.732	DOWNSTREAM Dg INTERGENIC
2R	16273927	2R_16273927_SNP [dm3] 2R_20386422_SNP [dm6]	T	A	5.388e^-5	0.732	INTERGENIC
2R	17256595	2R_17256595_SNP [dm3] 2R_21369090_SNP [dm6]	C	T	5.517e^-5	0.74	INTRON cv-2	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16760693	X_16760693_INS [dm3] X_16866660_INS [dm6]	T	TTCCTTT	5.548e^-5	0.74	INTRON CG13003
2L	12616488	2L_12616488_SNP [dm3] 2L_12616488_SNP [dm6]	T	C	5.567e^-5	0.74	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	10531508	3R_10531508_SNP [dm3] 3R_14705786_SNP [dm6]	G	A	5.631e^-5	0.74	INTRON kibra
3L	12374614	3L_12374614_SNP [dm3] 3L_12381514_SNP [dm6]	G	A	5.640e^-5	0.74	INTRON Ncc69	TF binding site mE1_TFBS_inv
2R	16273951	2R_16273951_SNP [dm3] 2R_20386446_SNP [dm6]	T	A	5.736e^-5	0.742	INTERGENIC
2R	16273953	2R_16273953_SNP [dm3] 2R_20386448_SNP [dm6]	T	A	5.736e^-5	0.742	INTERGENIC
2R	15270784	2R_15270784_SNP [dm3] 2R_19383279_SNP [dm6]	A	C	5.778e^-5	0.742	SYNONYMOUS_CODING CG10073
X	10568569	X_10568569_SNP [dm3] X_10674536_SNP [dm6]	G	C	5.822e^-5	0.743	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
2R	9577168	2R_9577168_SNP [dm3] 2R_13689663_SNP [dm6]	T	G	6.080e^-5	0.743	INTRON fas
3R	18469582	3R_18469582_SNP [dm3] 3R_22643860_SNP [dm6]	G	T	6.093e^-5	0.743	INTRON CG45058
3R	18469583	3R_18469583_SNP [dm3] 3R_22643861_SNP [dm6]	A	G	6.093e^-5	0.743	INTRON CG45058
3R	1051615	3R_1051615_DEL [dm3] 3R_5225893_DEL [dm6]	AGTTTT	CCTG	6.104e^-5	0.743	UPSTREAM Vps37B DOWNSTREAM CG14664 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
X	10751602	X_10751602_SNP [dm3] X_10857569_SNP [dm6]	G	A	6.125e^-5	0.743	UPSTREAM CG2186 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	12335182	3L_12335182_SNP [dm3] 3L_12342082_SNP [dm6]	A	C	6.170e^-5	0.743	INTRON CrzR
3R	14092878	3R_14092878_SNP [dm3] 3R_18267156_SNP [dm6]	G	A	6.171e^-5	0.743	UPSTREAM CG18599 INTERGENIC
2R	9675072	2R_9675072_SNP [dm3] 2R_13787567_SNP [dm6]	A	C	6.174e^-5	0.743	UTR_3_PRIME Cpr50Ca
2R	19573358	2R_19573358_SNP [dm3] 2R_23685835_SNP [dm6]	T	A	6.199e^-5	0.743	UPSTREAM l_2_efl INTRON St3
3R	26667039	3R_26667039_SNP [dm3] 3R_30841317_SNP [dm6]	G	T	6.237e^-5	0.743	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
2L	17778779	2L_17778779_DEL [dm3] 2L_17778779_DEL [dm6]	CGG	C	6.319e^-5	0.743	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
3L	7266474	3L_7266474_SNP [dm3] 3L_7273374_SNP [dm6]	G	A	6.357e^-5	0.743	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
3L	12374713	3L_12374713_SNP [dm3] 3L_12381613_SNP [dm6]	A	C	6.364e^-5	0.743	INTRON Ncc69	TF binding site mE1_TFBS_inv
2L	9532222	2L_9532222_DEL [dm3] 2L_9532222_DEL [dm6]	TACAAATGGAAGCCT...	T	6.465e^-5	0.743	INTRON Oatp30B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19649740	3R_19649740_SNP [dm3] 3R_23824018_SNP [dm6]	T	G	6.467e^-5	0.743	INTRON CG34355
X	6484376	X_6484376_SNP [dm3] X_6590343_SNP [dm6]	A	G	6.511e^-5	0.743	SYNONYMOUS_CODING CG17717 UPSTREAM Pat1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18550922	2R_18550922_SNP [dm3] 2R_22663417_SNP [dm6]	C	A	6.572e^-5	0.743	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
2R	9591743	2R_9591743_SNP [dm3] 2R_13704238_SNP [dm6]	T	C	6.744e^-5	0.743	INTRON fas
X	6119230	X_6119230_SNP [dm3] X_6225197_SNP [dm6]	G	A	6.746e^-5	0.743	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16273957	2R_16273957_SNP [dm3] 2R_20386452_SNP [dm6]	C	T	6.905e^-5	0.743	INTERGENIC
2R	16273934	2R_16273934_SNP [dm3] 2R_20386429_SNP [dm6]	T	A	6.918e^-5	0.743	INTERGENIC
2L	7900169	2L_7900169_SNP [dm3] 2L_7900169_SNP [dm6]	C	T	6.954e^-5	0.743	INTRON Snoo
2R	11372410	2R_11372410_SNP [dm3] 2R_15484905_SNP [dm6]	G	T	6.985e^-5	0.743	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2R	12848597	2R_12848597_SNP [dm3] 2R_16961092_SNP [dm6]	C	T	6.995e^-5	0.743	UPSTREAM CG9010 INTERGENIC
3R	8471644	3R_8471644_SNP [dm3] 3R_12645922_SNP [dm6]	A	G	7.076e^-5	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	6546636	2L_6546636_SNP [dm3] 2L_6546636_SNP [dm6]	G	C	7.104e^-5	0.743	UTR_5_PRIME eya	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	18125709	3R_18125709_SNP [dm3] 3R_22299987_SNP [dm6]	A	G	7.160e^-5	0.743	INTRON CG7084
2R	11373269	2R_11373269_SNP [dm3] 2R_15485764_SNP [dm6]	A	C	7.180e^-5	0.743	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	3483225	X_3483225_SNP [dm3] X_3589192_SNP [dm6]	A	G	7.212e^-5	0.743	INTRON AstA-R1
3L	5997888	3L_5997888_SNP [dm3] 3L_6004788_SNP [dm6]	C	T	7.253e^-5	0.743	INTRON PVRAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14093822	3R_14093822_SNP [dm3] 3R_18268100_SNP [dm6]	C	A	7.256e^-5	0.743	INTRON CG18599	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	11169441	2L_11169441_SNP [dm3] 2L_11169441_SNP [dm6]	C	T	7.499e^-5	0.743	INTRON Ca-beta	TF binding site mE1_TFBS_Trl
2R	16273977	2R_16273977_SNP [dm3] 2R_20386472_SNP [dm6]	A	G	7.525e^-5	0.743	INTERGENIC
2R	17929804	2R_17929804_SNP [dm3] 2R_22042299_SNP [dm6]	A	G	7.544e^-5	0.743	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna
2L	5685161	2L_5685161_SNP [dm3] 2L_5685161_SNP [dm6]	A	T	7.577e^-5	0.743	INTERGENIC
X	6988455	X_6988455_DEL [dm3] X_7094422_DEL [dm6]	GG	G	7.650e^-5	0.743	INTRON Sxl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	19649763	3R_19649763_INS [dm3] 3R_23824041_INS [dm6]	T	TGT	7.738e^-5	0.743	INTRON CG34355
2R	12089161	2R_12089161_SNP [dm3] 2R_16201656_SNP [dm6]	C	T	7.743e^-5	0.743	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo
X	6121354	X_6121354_SNP [dm3] X_6227321_SNP [dm6]	C	G	7.792e^-5	0.743	SYNONYMOUS_CODING CG14446	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	17927480	2R_17927480_SNP [dm3] 2R_22039975_SNP [dm6]	T	A	7.908e^-5	0.743	UPSTREAM CG34370 INTERGENIC
3R	19127380	3R_19127380_SNP [dm3] 3R_23301658_SNP [dm6]	C	T	7.947e^-5	0.743	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	6941442	2L_6941442_SNP [dm3] 2L_6941442_SNP [dm6]	T	C	8.010e^-5	0.743	INTRON CG18304	TF binding site BDTNP1_TFBS_dl
2R	14319883	2R_14319883_SNP [dm3] 2R_18432378_SNP [dm6]	G	A	8.030e^-5	0.743	INTRON CG30118
3R	9781740	3R_9781740_SNP [dm3] 3R_13956018_SNP [dm6]	C	T	8.042e^-5	0.743	INTERGENIC
3L	7748848	3L_7748848_SNP [dm3] 3L_7755748_SNP [dm6]	G	A	8.063e^-5	0.743	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
3L	12374818	3L_12374818_SNP [dm3] 3L_12381718_SNP [dm6]	C	T	8.116e^-5	0.743	INTRON Ncc69	TF binding site mE1_TFBS_inv
3L	12493961	3L_12493961_SNP [dm3] 3L_12500861_SNP [dm6]	G	A	8.129e^-5	0.743	UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638	TF binding site mE1_TFBS_sens
3R	27165482	3R_27165482_SNP [dm3] 3R_31339760_SNP [dm6]	G	A	8.186e^-5	0.743	INTRON CG34347
2L	14846044	2L_14846044_SNP [dm3] 2L_14846044_SNP [dm6]	G	T	8.369e^-5	0.743	SYNONYMOUS_CODING CG15279
2R	16273974	2R_16273974_SNP [dm3] 2R_20386469_SNP [dm6]	T	A	8.431e^-5	0.743	INTERGENIC
3L	11256257	3L_11256257_SNP [dm3] 3L_11263157_SNP [dm6]	C	T	8.467e^-5	0.743	INTERGENIC
2L	13236966	2L_13236966_SNP [dm3] 2L_13236966_SNP [dm6]	A	G	8.519e^-5	0.743	INTRON CG5867
2L	7466034	2L_7466034_DEL [dm3] 2L_7466034_DEL [dm6]	TA	T	8.530e^-5	0.743	UPSTREAM CG6055 INTERGENIC
2L	9888636	2L_9888636_SNP [dm3] 2L_9888636_SNP [dm6]	C	A	8.533e^-5	0.743	INTRON FKBP59	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1969760	2L_1969760_SNP [dm3] 2L_1969760_SNP [dm6]	T	C	8.564e^-5	0.743	INTRON erm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	4912642	3R_4912642_SNP [dm3] 3R_9086920_SNP [dm6]	T	A	8.588e^-5	0.743	INTRON pum
X	4558070	X_4558070_SNP [dm3] X_4664037_SNP [dm6]	T	C	8.602e^-5	0.743	INTRON CG3009
2L	6007334	2L_6007334_SNP [dm3] 2L_6007334_SNP [dm6]	C	T	8.655e^-5	0.743	UPSTREAM Gal DOWNSTREAM CG9098 INTERGENIC
3L	767649	3L_767649_SNP [dm3] 3L_767649_SNP [dm6]	T	C	8.694e^-5	0.743	INTERGENIC
3R	18129004	3R_18129004_SNP [dm3] 3R_22303282_SNP [dm6]	G	A	8.707e^-5	0.743	INTRON CG7084
2R	18290506	2R_18290506_SNP [dm3] 2R_22403001_SNP [dm6]	C	T	8.810e^-5	0.743	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	13626629	2L_13626629_SNP [dm3] 2L_13626629_SNP [dm6]	C	A	8.812e^-5	0.743	INTRON kuz
3R	5100506	3R_5100506_SNP [dm3] 3R_9274784_SNP [dm6]	G	T	8.846e^-5	0.743	INTERGENIC
3R	8705383	3R_8705383_SNP [dm3] 3R_12879661_SNP [dm6]	A	G	8.880e^-5	0.743	INTERGENIC
X	15169590	X_15169590_INS [dm3] X_15275557_INS [dm6]	A	AAATTAA	8.888e^-5	0.743	INTERGENIC
3L	7786324	3L_7786324_SNP [dm3] 3L_7793224_SNP [dm6]	A	G	9.003e^-5	0.743	INTRON CG32369
2L	972842	2L_972842_SNP [dm3] 2L_972842_SNP [dm6]	A	G	9.072e^-5	0.743	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13210214	3R_13210214_SNP [dm3] 3R_17384492_SNP [dm6]	A	T	9.166e^-5	0.743	INTRON Brf & 1 other
2R	19917447	2R_19917447_SNP [dm3] 2R_24029924_SNP [dm6]	G	A	9.169e^-5	0.743	NON_SYNONYMOUS_CODING CG3163 DOWNSTREAM CG30172	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	8513424	3R_8513424_SNP [dm3] 3R_12687702_SNP [dm6]	C	G	9.385e^-5	0.743	INTRON kar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11339082	2L_11339082_SNP [dm3] 2L_11339082_SNP [dm6]	A	C	9.399e^-5	0.743	UPSTREAM CR44585 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2R	11373104	2R_11373104_SNP [dm3] 2R_15485599_SNP [dm6]	T	A	9.403e^-5	0.743	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	11207423	3R_11207423_SNP [dm3] 3R_15381701_SNP [dm6]	G	C	9.422e^-5	0.743	SYNONYMOUS_CODING Rbp UTR_3_PRIME h-cup
3R	7877976	3R_7877976_SNP [dm3] 3R_12052254_SNP [dm6]	A	C	9.426e^-5	0.743	INTERGENIC
3L	4840608	3L_4840608_SNP [dm3] 3L_4840608_SNP [dm6]	C	A	9.435e^-5	0.743	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	10751624	X_10751624_SNP [dm3] X_10857591_SNP [dm6]	G	A	9.514e^-5	0.743	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	448809	2L_448809_DEL [dm3] 2L_448809_DEL [dm6]	AA	A	9.535e^-5	0.743	UTR_3_PRIME crq DOWNSTREAM ex
X	14016170	X_14016170_SNP [dm3] X_14122137_SNP [dm6]	T	G	9.561e^-5	0.743	INTERGENIC
3R	8705486	3R_8705486_SNP [dm3] 3R_12879764_SNP [dm6]	A	T	9.580e^-5	0.743	INTERGENIC
2R	1354359	2R_1354359_SNP [dm3] 2R_5466854_SNP [dm6]	C	A	9.638e^-5	0.743	INTERGENIC	transposable element FlyBase
X	12160591	X_12160591_SNP [dm3] X_12266558_SNP [dm6]	C	G	9.646e^-5	0.743	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2312254	3L_2312254_SNP [dm3] 3L_2312254_SNP [dm6]	G	T	9.651e^-5	0.743	INTERGENIC
3R	13210218	3R_13210218_DEL [dm3] 3R_17384496_DEL [dm6]	TACGCATCAA	T	9.662e^-5	0.743	INTRON Brf & 1 other
3R	13210266	3R_13210266_SNP [dm3] 3R_17384544_SNP [dm6]	A	T	9.662e^-5	0.743	INTRON Brf & 1 other
3R	24836863	3R_24836863_SNP [dm3] 3R_29011141_SNP [dm6]	C	T	9.719e^-5	0.743	INTRON wat
2L	12229044	2L_12229044_SNP [dm3] 2L_12229044_SNP [dm6]	A	G	9.736e^-5	0.743	INTRON aret
2L	6287335	2L_6287335_SNP [dm3] 2L_6287335_SNP [dm6]	G	T	9.772e^-5	0.743	INTRON Ddr	TF binding site BDTNP1_TFBS_twi
3L	5513044	3L_5513044_SNP [dm3] 3L_5519944_SNP [dm6]	C	T	9.795e^-5	0.743	INTRON Lkr
3R	8558650	3R_8558650_DEL [dm3] 3R_12732928_DEL [dm6]	TTCTATTTATTTCTATT...	T	9.805e^-5	0.743	INTERGENIC
3L	2647946	3L_2647946_SNP [dm3] 3L_2647946_SNP [dm6]	T	G	9.859e^-5	0.743	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
2R	11163175	2R_11163175_SNP [dm3] 2R_15275670_SNP [dm6]	A	G	9.965e^-5	0.743	INTRON Trpm
2R	12073056	2R_12073056_SNP [dm3] 2R_16185551_SNP [dm6]	A	G	1.005e^-4	0.743	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	15270817	2R_15270817_SNP [dm3] 2R_19383312_SNP [dm6]	G	A	1.007e^-4	0.743	SYNONYMOUS_CODING CG10073
3R	26036709	3R_26036709_SNP [dm3] 3R_30210987_SNP [dm6]	C	G	1.007e^-4	0.743	NON_SYNONYMOUS_CODING CecA1 UPSTREAM Cec-Psi1 DOWNSTREAM Anp
3L	6805744	3L_6805744_SNP [dm3] 3L_6812644_SNP [dm6]	C	T	1.008e^-4	0.743	INTERGENIC
3L	3347295	3L_3347295_SNP [dm3] 3L_3347295_SNP [dm6]	C	T	1.009e^-4	0.743	INTRON kst
3L	7786826	3L_7786826_SNP [dm3] 3L_7793726_SNP [dm6]	G	A	1.017e^-4	0.743	INTRON CG32369
3R	13210235	3R_13210235_DEL [dm3] 3R_17384513_DEL [dm6]	TCCCTGTAAAA...	T	1.018e^-4	0.743	INTRON Brf & 1 other
3R	13210256	3R_13210256_MNP [dm3] 3R_17384534_MNP [dm6]	CGAC	TTTA	1.018e^-4	0.743	INTRON Brf & 1 other
3L	3707204	3L_3707204_SNP [dm3] 3L_3707204_SNP [dm6]	C	T	1.019e^-4	0.743	INTERGENIC
2L	13237073	2L_13237073_SNP [dm3] 2L_13237073_SNP [dm6]	G	T	1.024e^-4	0.743	INTRON CG5867
3R	5098969	3R_5098969_SNP [dm3] 3R_9273247_SNP [dm6]	C	T	1.034e^-4	0.743	INTERGENIC
X	6451624	X_6451624_SNP [dm3] X_6557591_SNP [dm6]	C	A	1.036e^-4	0.743	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
X	10628405	X_10628405_SNP [dm3] X_10734372_SNP [dm6]	G	C	1.037e^-4	0.743	INTRON CG32676
X	19889703	X_19889703_SNP [dm3] X_19995670_SNP [dm6]	G	C	1.041e^-4	0.743	INTERGENIC
3R	5354047	3R_5354047_SNP [dm3] 3R_9528325_SNP [dm6]	G	A	1.047e^-4	0.743	UTR_3_PRIME by DOWNSTREAM by
X	11193888	X_11193888_SNP [dm3] X_11299855_SNP [dm6]	A	G	1.072e^-4	0.743	INTRON CG44422
3L	1669959	3L_1669959_SNP [dm3] 3L_1669959_SNP [dm6]	C	T	1.087e^-4	0.743	SYNONYMOUS_CODING RabX5 DOWNSTREAM CG13930	TF binding site mE1_TFBS_chinmo
2L	7900660	2L_7900660_SNP [dm3] 2L_7900660_SNP [dm6]	T	A	1.100e^-4	0.743	INTRON Snoo
3L	19633508	3L_19633508_DEL [dm3] 3L_19640408_DEL [dm6]	GTTTG	G	1.101e^-4	0.743	UTR_3_PRIME CG8786 INTRON CG8786
3L	19097279	3L_19097279_INS [dm3] 3L_19104179_INS [dm6]	G	GATACG	1.102e^-4	0.743	INTERGENIC
3L	5198411	3L_5198411_SNP [dm3] 3L_5205311_SNP [dm6]	T	C	1.103e^-4	0.743	INTRON shep
3L	11051101	3L_11051101_SNP [dm3] 3L_11058001_SNP [dm6]	A	T	1.109e^-4	0.743	INTRON CG7888	TF binding site mE1_TFBS_cad
3R	12762406	3R_12762406_SNP [dm3] 3R_16936684_SNP [dm6]	A	C	1.109e^-4	0.743	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20428099	2L_20428099_SNP [dm3] 2L_20428099_SNP [dm6]	G	T	1.112e^-4	0.743	UPSTREAM CG31688 INTRON CG31688	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7027467	3L_7027467_SNP [dm3] 3L_7034367_SNP [dm6]	T	A	1.112e^-4	0.743	INTRON Mp
X	5076530	X_5076530_SNP [dm3] X_5182497_SNP [dm6]	C	T	1.113e^-4	0.743	UPSTREAM CG5062 INTRON rg & 1 other
2R	11373190	2R_11373190_SNP [dm3] 2R_15485685_SNP [dm6]	A	T	1.114e^-4	0.743	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	8768435	3R_8768435_SNP [dm3] 3R_12942713_SNP [dm6]	A	G	1.115e^-4	0.743	INTERGENIC
3R	14184710	3R_14184710_DEL [dm3] 3R_18358988_DEL [dm6]	AA	A	1.117e^-4	0.743	INTRON CG15803
3R	19768146	3R_19768146_SNP [dm3] 3R_23942424_SNP [dm6]	T	C	1.140e^-4	0.743	INTRON Gdh	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11038893	2R_11038893_SNP [dm3] 2R_15151388_SNP [dm6]	A	C	1.159e^-4	0.743	INTERGENIC
2L	17778773	2L_17778773_DEL [dm3] 2L_17778773_DEL [dm6]	TAAAA	T	1.162e^-4	0.743	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9258803	3L_9258803_SNP [dm3] 3L_9265703_SNP [dm6]	G	T	1.163e^-4	0.743	INTRON GluRIB
3R	27141006	3R_27141006_SNP [dm3] 3R_31315284_SNP [dm6]	T	C	1.165e^-4	0.743	INTRON CG34347	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6157963	3L_6157963_SNP [dm3] 3L_6164863_SNP [dm6]	A	T	1.169e^-4	0.743	DOWNSTREAM CG10289 & 1 other INTERGENIC
3L	6157972	3L_6157972_SNP [dm3] 3L_6164872_SNP [dm6]	G	A	1.173e^-4	0.743	DOWNSTREAM CG10289 & 1 other INTERGENIC
3L	12283294	3L_12283294_SNP [dm3] 3L_12290194_SNP [dm6]	G	A	1.175e^-4	0.743	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	7779028	2L_7779028_SNP [dm3] 2L_7779028_SNP [dm6]	C	G	1.175e^-4	0.743	UPSTREAM CG7179 INTERGENIC
X	10567637	X_10567637_SNP [dm3] X_10673604_SNP [dm6]	G	A	1.181e^-4	0.743	UPSTREAM CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
3R	13226496	3R_13226496_SNP [dm3] 3R_17400774_SNP [dm6]	A	G	1.183e^-4	0.743	INTRON Sur-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	5097536	3R_5097536_SNP [dm3] 3R_9271814_SNP [dm6]	G	A	1.184e^-4	0.743	INTERGENIC
2L	7776180	2L_7776180_SNP [dm3] 2L_7776180_SNP [dm6]	G	A	1.186e^-4	0.743	SYNONYMOUS_CODING CG7179	TF binding site mE1_TFBS_cad
X	6119484	X_6119484_SNP [dm3] X_6225451_SNP [dm6]	A	T	1.187e^-4	0.743	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
3L	9258799	3L_9258799_SNP [dm3] 3L_9265699_SNP [dm6]	A	C	1.188e^-4	0.743	INTRON GluRIB
2R	12073113	2R_12073113_SNP [dm3] 2R_16185608_SNP [dm6]	C	T	1.192e^-4	0.743	SYNONYMOUS_CODING CG8441 UPSTREAM clu DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	16338592	3L_16338592_SNP [dm3] 3L_16345492_SNP [dm6]	C	T	1.193e^-4	0.743	UPSTREAM CG33257 DOWNSTREAM CG4998 INTERGENIC
2R	11373035	2R_11373035_SNP [dm3] 2R_15485530_SNP [dm6]	G	T	1.193e^-4	0.743	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	5521648	3L_5521648_SNP [dm3] 3L_5528548_SNP [dm6]	T	C	1.198e^-4	0.743	INTRON Lkr
2L	2433134	2L_2433134_SNP [dm3] 2L_2433134_SNP [dm6]	A	T	1.200e^-4	0.743	INTRON dpp
2L	7900584	2L_7900584_SNP [dm3] 2L_7900584_SNP [dm6]	G	A	1.210e^-4	0.743	INTRON Snoo
3R	14446948	3R_14446948_SNP [dm3] 3R_18621226_SNP [dm6]	A	G	1.210e^-4	0.743	UPSTREAM CG14304 INTRON qin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14137801	X_14137801_DEL [dm3] X_14243768_DEL [dm6]	TT	T	1.220e^-4	0.743	UTR_5_PRIME CG32599 UPSTREAM mRNA-cap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2024419	3R_2024419_SNP [dm3] 3R_6198697_SNP [dm6]	C	T	1.226e^-4	0.743	UPSTREAM Osi24 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7779082	2L_7779082_SNP [dm3] 2L_7779082_SNP [dm6]	T	A	1.230e^-4	0.743	INTERGENIC
3L	19473634	3L_19473634_SNP [dm3] 3L_19480534_SNP [dm6]	T	A	1.233e^-4	0.743	INTERGENIC
3R	23513090	3R_23513090_SNP [dm3] 3R_27687368_SNP [dm6]	A	G	1.234e^-4	0.743	NON_SYNONYMOUS_CODING CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2254377	2L_2254377_SNP [dm3] 2L_2254377_SNP [dm6]	C	T	1.239e^-4	0.743	NON_SYNONYMOUS_CODING Send1 DOWNSTREAM CG17234
2R	10338317	2R_10338317_SNP [dm3] 2R_14450812_SNP [dm6]	T	C	1.241e^-4	0.743	INTRON Oaz	TF binding site mE1_TFBS_cad
3L	15640878	3L_15640878_SNP [dm3] 3L_15647778_SNP [dm6]	C	T	1.245e^-4	0.743	UPSTREAM CG43083 & 1 other INTERGENIC
3L	8617299	3L_8617299_SNP [dm3] 3L_8624199_SNP [dm6]	C	T	1.245e^-4	0.743	UPSTREAM Zasp66 & 1 other INTERGENIC
2R	19917448	2R_19917448_SNP [dm3] 2R_24029925_SNP [dm6]	T	A	1.254e^-4	0.743	NON_SYNONYMOUS_CODING CG3163 DOWNSTREAM CG30172	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	2545488	3L_2545488_SNP [dm3] 3L_2545488_SNP [dm6]	A	G	1.259e^-4	0.743	INTRON Spn
X	12294347	X_12294347_SNP [dm3] X_12400314_SNP [dm6]	T	A	1.263e^-4	0.743	INTERGENIC
3L	8617249	3L_8617249_SNP [dm3] 3L_8624149_SNP [dm6]	A	T	1.269e^-4	0.743	UPSTREAM Zasp66 & 1 other INTERGENIC
X	14088553	X_14088553_SNP [dm3] X_14194520_SNP [dm6]	G	A	1.273e^-4	0.743	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo
X	6119389	X_6119389_SNP [dm3] X_6225356_SNP [dm6]	C	A	1.279e^-4	0.743	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	18474269	3R_18474269_SNP [dm3] 3R_22648547_SNP [dm6]	G	T	1.284e^-4	0.743	INTRON CG45058
3L	8070216	3L_8070216_SNP [dm3] 3L_8077116_SNP [dm6]	G	A	1.287e^-4	0.743	UPSTREAM Ect4 INTRON Ect4	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	18129074	3R_18129074_SNP [dm3] 3R_22303352_SNP [dm6]	C	T	1.295e^-4	0.743	INTRON CG7084
2L	2257144	2L_2257144_SNP [dm3] 2L_2257144_SNP [dm6]	C	T	1.299e^-4	0.743	DOWNSTREAM CR44787 INTERGENIC
3L	10351661	3L_10351661_SNP [dm3] 3L_10358561_SNP [dm6]	A	G	1.302e^-4	0.743	INTRON CR44327
2R	9675391	2R_9675391_SNP [dm3] 2R_13787886_SNP [dm6]	G	A	1.311e^-4	0.743	DOWNSTREAM Cpr50Ca INTERGENIC
2R	11373265	2R_11373265_SNP [dm3] 2R_15485760_SNP [dm6]	G	T	1.321e^-4	0.743	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14931884	2R_14931884_SNP [dm3] 2R_19044379_SNP [dm6]	C	T	1.325e^-4	0.743	INTERGENIC
3L	7794297	3L_7794297_SNP [dm3] 3L_7801197_SNP [dm6]	C	T	1.339e^-4	0.743	INTRON CG32369
3R	8768453	3R_8768453_SNP [dm3] 3R_12942731_SNP [dm6]	G	A	1.341e^-4	0.743	INTERGENIC
3R	26176121	3R_26176121_SNP [dm3] 3R_30350399_SNP [dm6]	G	C	1.376e^-4	0.743	INTRON hdc
2L	12101398	2L_12101398_SNP [dm3] 2L_12101398_SNP [dm6]	A	G	1.379e^-4	0.743	SYNONYMOUS_CODING Patsas DOWNSTREAM Ced-12
X	10892854	X_10892854_SNP [dm3] X_10998821_SNP [dm6]	A	G	1.380e^-4	0.743	INTRON CG42339
2L	17930966	2L_17930966_SNP [dm3] 2L_17930966_SNP [dm6]	T	C	1.386e^-4	0.743	INTERGENIC
2R	11382815	2R_11382815_SNP [dm3] 2R_15495310_SNP [dm6]	G	A	1.388e^-4	0.743	INTRON CG12964
3R	15064752	3R_15064752_SNP [dm3] 3R_19239030_SNP [dm6]	A	G	1.391e^-4	0.743	INTRON unc79	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	16317394	2R_16317394_SNP [dm3] 2R_20429889_SNP [dm6]	A	G	1.391e^-4	0.743	INTRON CG12484
2L	9862304	2L_9862304_INS [dm3] 2L_9862304_INS [dm6]	A	AGCAATTAA	1.392e^-4	0.743	INTRON nAChRalpha6
2L	14028308	2L_14028308_SNP [dm3] 2L_14028308_SNP [dm6]	G	A	1.403e^-4	0.743	NON_SYNONYMOUS_CODING CG4500 DOWNSTREAM CG18095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22443127	3R_22443127_SNP [dm3] 3R_26617405_SNP [dm6]	C	T	1.404e^-4	0.743	INTERGENIC
2R	19346678	2R_19346678_INS [dm3] 2R_23459155_INS [dm6]	T	TT	1.404e^-4	0.743	UPSTREAM skpF INTRON CG43795
2R	9668131	2R_9668131_SNP [dm3] 2R_13780626_SNP [dm6]	G	T	1.409e^-4	0.743	UPSTREAM S-Lap7 INTRON Cpr50Ca
2R	11372482	2R_11372482_SNP [dm3] 2R_15484977_SNP [dm6]	G	T	1.410e^-4	0.743	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	7267154	2L_7267154_INS [dm3] 2L_7267154_INS [dm6]	T	TT	1.413e^-4	0.743	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	12675995	X_12675995_SNP [dm3] X_12781962_SNP [dm6]	C	A	1.415e^-4	0.743	INTRON CG32647
3R	26115713	3R_26115713_SNP [dm3] 3R_30289991_SNP [dm6]	A	C	1.420e^-4	0.743	INTRON hdc
3L	17970794	3L_17970794_SNP [dm3] 3L_17977694_SNP [dm6]	G	T	1.424e^-4	0.743	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3R	180809	3R_180809_SNP [dm3] 3R_4355087_SNP [dm6]	T	A	1.425e^-4	0.743	INTERGENIC
2R	3346715	2R_3346715_SNP [dm3] 2R_7459210_SNP [dm6]	G	C	1.426e^-4	0.743	UPSTREAM Inos DOWNSTREAM CG11141 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11925531	2L_11925531_SNP [dm3] 2L_11925531_SNP [dm6]	A	G	1.429e^-4	0.743	INTRON Pde1c
3L	8616926	3L_8616926_SNP [dm3] 3L_8623826_SNP [dm6]	G	A	1.429e^-4	0.743	UTR_5_PRIME GAPsec UPSTREAM Zasp66
3L	6028417	3L_6028417_SNP [dm3] 3L_6035317_SNP [dm6]	A	G	1.432e^-4	0.743	SYNONYMOUS_CODING yip7 UPSTREAM CG10477	TF binding site mE1_TFBS_cad
2L	7267135	2L_7267135_SNP [dm3] 2L_7267135_SNP [dm6]	G	A	1.434e^-4	0.743	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12785316	3L_12785316_SNP [dm3] 3L_12792216_SNP [dm6]	G	C	1.436e^-4	0.743	INTRON Atg1 & 1 other
2R	18909663	2R_18909663_SNP [dm3] 2R_23022140_SNP [dm6]	T	C	1.439e^-4	0.743	INTRON twi & 1 other
2R	11373253	2R_11373253_INS [dm3] 2R_15485748_INS [dm6]	A	AAAAAATTAAAATTAAAAAA...	1.439e^-4	0.743	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	6119371	X_6119371_SNP [dm3] X_6225338_SNP [dm6]	T	C	1.442e^-4	0.743	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	6119316	X_6119316_SNP [dm3] X_6225283_SNP [dm6]	A	G	1.443e^-4	0.743	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	7741925	3R_7741925_SNP [dm3] 3R_11916203_SNP [dm6]	A	T	1.445e^-4	0.743	INTRON Cad87A
3L	1057784	3L_1057784_SNP [dm3] 3L_1057784_SNP [dm6]	G	A	1.448e^-4	0.743	INTRON bab1
3R	10004304	3R_10004304_SNP [dm3] 3R_14178582_SNP [dm6]	A	C	1.448e^-4	0.743	INTRON Dop1R1
2L	7462077	2L_7462077_SNP [dm3] 2L_7462077_SNP [dm6]	T	C	1.463e^-4	0.743	SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11966532	2L_11966532_SNP [dm3] 2L_11966532_SNP [dm6]	G	T	1.464e^-4	0.743	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	2686887	2L_2686887_SNP [dm3] 2L_2686887_SNP [dm6]	A	G	1.465e^-4	0.743	INTRON CG31690
2L	14846035	2L_14846035_SNP [dm3] 2L_14846035_SNP [dm6]	G	A	1.470e^-4	0.743	SYNONYMOUS_CODING CG15279
3L	17172010	3L_17172010_SNP [dm3] 3L_17178910_SNP [dm6]	G	A	1.480e^-4	0.743	INTRON Rbp6
3L	7748843	3L_7748843_SNP [dm3] 3L_7755743_SNP [dm6]	G	A	1.482e^-4	0.743	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
3R	4294576	3R_4294576_SNP [dm3] 3R_8468854_SNP [dm6]	T	A	1.490e^-4	0.743	INTRON CG45263	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	10751574	X_10751574_SNP [dm3] X_10857541_SNP [dm6]	T	C	1.493e^-4	0.743	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	8548950	2R_8548950_SNP [dm3] 2R_12661445_SNP [dm6]	G	C	1.495e^-4	0.743	UTR_5_PRIME nemy INTRON nemy
2L	18013560	2L_18013560_SNP [dm3] 2L_18013560_SNP [dm6]	G	A	1.496e^-4	0.743	INTRON rdo	regulatory region REDfly_CRMs
3L	8617199	3L_8617199_SNP [dm3] 3L_8624099_SNP [dm6]	G	T	1.498e^-4	0.743	UPSTREAM Zasp66 & 1 other INTERGENIC
2R	12073825	2R_12073825_DEL [dm3] 2R_16186320_DEL [dm6]	CCTCAACGACGC...	A	1.498e^-4	0.743	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7875604	3R_7875604_SNP [dm3] 3R_12049882_SNP [dm6]	G	A	1.503e^-4	0.743	UPSTREAM CG14739 INTERGENIC
2L	1986135	2L_1986135_SNP [dm3] 2L_1986135_SNP [dm6]	C	G	1.504e^-4	0.743	INTRON Got2
2L	6080045	2L_6080045_SNP [dm3] 2L_6080045_SNP [dm6]	G	A	1.507e^-4	0.743	DOWNSTREAM CR9162 EXON CR44773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	19768178	3R_19768178_SNP [dm3] 3R_23942456_SNP [dm6]	C	A	1.510e^-4	0.743	INTRON Gdh	TF binding site BDTNP1_TFBS_twi
X	5813456	X_5813456_SNP [dm3] X_5919423_SNP [dm6]	G	A	1.512e^-4	0.743	INTRON CG3726	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7818981	2L_7818981_SNP [dm3] 2L_7818981_SNP [dm6]	C	T	1.513e^-4	0.743	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5681957	2L_5681957_SNP [dm3] 2L_5681957_SNP [dm6]	C	T	1.519e^-4	0.743	INTERGENIC
X	4239427	X_4239427_SNP [dm3] X_4345394_SNP [dm6]	G	A	1.519e^-4	0.743	INTRON norpA
2L	5021566	2L_5021566_INS [dm3] 2L_5021566_INS [dm6]	T	TGTAT	1.521e^-4	0.743	INTRON vkg
3L	18034877	3L_18034877_INS [dm3] 3L_18041777_INS [dm6]	C	CTT	1.523e^-4	0.743	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B	TF binding site mE1_TFBS_zfh1
3L	7537225	3L_7537225_DEL [dm3] 3L_7544125_DEL [dm6]	TTGT	T	1.524e^-4	0.743	INTERGENIC
2R	10057977	2R_10057977_SNP [dm3] 2R_14170472_SNP [dm6]	C	G	1.524e^-4	0.743	UTR_5_PRIME CG8331 UPSTREAM CG8331 & 1 other DOWNSTREAM CG18324	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17927489	2R_17927489_INS [dm3] 2R_22039984_INS [dm6]	T	TAGCCTAATAGTTTTGGAAA...	1.525e^-4	0.743	UPSTREAM CG34370 INTERGENIC
2R	12074021	2R_12074021_SNP [dm3] 2R_16186516_SNP [dm6]	C	A	1.531e^-4	0.743	UPSTREAM clu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Ubx
X	3140747	X_3140747_SNP [dm3] X_3246714_SNP [dm6]	G	A	1.532e^-4	0.743	INTRON dnc
3R	26760217	3R_26760217_DEL [dm3] 3R_30934495_DEL [dm6]	GTGTCAAATGAATTTCAATG...	T	1.532e^-4	0.743	DOWNSTREAM CG15549 INTERGENIC
3L	10372182	3L_10372182_SNP [dm3] 3L_10379082_SNP [dm6]	C	T	1.536e^-4	0.743	INTERGENIC
3R	17901666	3R_17901666_SNP [dm3] 3R_22075944_SNP [dm6]	A	C	1.536e^-4	0.743	INTRON how
2R	3354863	2R_3354863_SNP [dm3] 2R_7467358_SNP [dm6]	A	G	1.540e^-4	0.743	UPSTREAM p47 INTRON Aldh-III	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17778667	2L_17778667_SNP [dm3] 2L_17778667_SNP [dm6]	G	T	1.540e^-4	0.743	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17927498	2R_17927498_SNP [dm3] 2R_22039993_SNP [dm6]	C	G	1.542e^-4	0.743	UPSTREAM CG34370 INTERGENIC
2L	2257173	2L_2257173_SNP [dm3] 2L_2257173_SNP [dm6]	C	T	1.544e^-4	0.743	DOWNSTREAM CR44787 INTERGENIC
2L	1986123	2L_1986123_SNP [dm3] 2L_1986123_SNP [dm6]	T	C	1.545e^-4	0.743	INTRON Got2
3R	666923	3R_666923_SNP [dm3] 3R_4841201_SNP [dm6]	A	G	1.547e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15638732	3L_15638732_SNP [dm3] 3L_15645632_SNP [dm6]	A	T	1.548e^-4	0.743	INTRON comm3
2L	7900646	2L_7900646_SNP [dm3] 2L_7900646_SNP [dm6]	G	C	1.549e^-4	0.743	INTRON Snoo
2L	18013559	2L_18013559_SNP [dm3] 2L_18013559_SNP [dm6]	A	G	1.552e^-4	0.743	INTRON rdo	regulatory region REDfly_CRMs
3L	277382	3L_277382_SNP [dm3] 3L_277382_SNP [dm6]	G	C	1.553e^-4	0.743	UPSTREAM RhoGEF3 DOWNSTREAM ttm2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13600835	2L_13600835_SNP [dm3] 2L_13600835_SNP [dm6]	G	A	1.560e^-4	0.743	INTRON kuz
3L	15623955	3L_15623955_DEL [dm3] 3L_15630855_DEL [dm6]	AG	T	1.560e^-4	0.743	INTRON comm3
2L	4304206	2L_4304206_INS [dm3] 2L_4304206_INS [dm6]	A	AGT	1.565e^-4	0.743	INTRON tutl
X	17933312	X_17933312_SNP [dm3] X_18039279_SNP [dm6]	G	A	1.565e^-4	0.743	START_GAINED Sh UTR_5_PRIME Sh
2L	11299632	2L_11299632_SNP [dm3] 2L_11299632_SNP [dm6]	G	T	1.566e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2375229	X_2375229_SNP [dm3] X_2481196_SNP [dm6]	T	C	1.576e^-4	0.743	SYNONYMOUS_CODING trol
3R	8538956	3R_8538956_SNP [dm3] 3R_12713234_SNP [dm6]	G	C	1.585e^-4	0.743	UTR_3_PRIME Men UPSTREAM mus308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sbb
3L	12283242	3L_12283242_SNP [dm3] 3L_12290142_SNP [dm6]	T	G	1.596e^-4	0.743	DOWNSTREAM CG4328 EXON CR45658	TF binding site BDTNP1_TFBS_prd
2L	13236929	2L_13236929_SNP [dm3] 2L_13236929_SNP [dm6]	A	G	1.598e^-4	0.743	INTRON CG5867
2R	18290525	2R_18290525_SNP [dm3] 2R_22403020_SNP [dm6]	A	G	1.600e^-4	0.743	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	7362250	X_7362250_DEL [dm3] X_7468217_DEL [dm6]	AAATATTGATA...	A	1.609e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14092972	3R_14092972_SNP [dm3] 3R_18267250_SNP [dm6]	T	C	1.610e^-4	0.743	UPSTREAM CG18599 INTERGENIC
2L	7900597	2L_7900597_SNP [dm3] 2L_7900597_SNP [dm6]	C	A	1.612e^-4	0.743	INTRON Snoo
2L	5499574	2L_5499574_SNP [dm3] 2L_5499574_SNP [dm6]	T	G	1.616e^-4	0.743	INTERGENIC
3R	26736621	3R_26736621_INS [dm3] 3R_30910899_INS [dm6]	C	CC	1.622e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3140734	X_3140734_DEL [dm3] X_3246701_DEL [dm6]	TA	T	1.624e^-4	0.743	INTRON dnc
2R	17985771	2R_17985771_SNP [dm3] 2R_22098266_SNP [dm6]	A	C	1.634e^-4	0.743	INTRON CG11073
2L	2303106	2L_2303106_SNP [dm3] 2L_2303106_SNP [dm6]	A	T	1.643e^-4	0.743	INTERGENIC
2R	8550101	2R_8550101_SNP [dm3] 2R_12662596_SNP [dm6]	A	T	1.645e^-4	0.743	UPSTREAM nemy INTRON nemy
2R	14994295	2R_14994295_SNP [dm3] 2R_19106790_SNP [dm6]	G	A	1.647e^-4	0.743	INTRON 5-HT1A
X	6119382	X_6119382_SNP [dm3] X_6225349_SNP [dm6]	A	G	1.648e^-4	0.743	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	27059542	3R_27059542_SNP [dm3] 3R_31233820_SNP [dm6]	C	A	1.649e^-4	0.743	SYNONYMOUS_CODING CG15564	TF binding site mE1_TFBS_chinmo
3R	18128426	3R_18128426_SNP [dm3] 3R_22302704_SNP [dm6]	G	A	1.665e^-4	0.743	INTRON CG7084	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6707413	2L_6707413_SNP [dm3] 2L_6707413_SNP [dm6]	G	A	1.691e^-4	0.743	INTRON Tsp
X	6119409	X_6119409_SNP [dm3] X_6225376_SNP [dm6]	T	G	1.702e^-4	0.743	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7986113	2L_7986113_SNP [dm3] 2L_7986113_SNP [dm6]	T	C	1.717e^-4	0.743	DOWNSTREAM pes INTRON CG7231	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9201831	2L_9201831_SNP [dm3] 2L_9201831_SNP [dm6]	G	T	1.719e^-4	0.743	INTRON tai
2R	14795233	2R_14795233_SNP [dm3] 2R_18907728_SNP [dm6]	T	C	1.721e^-4	0.743	INTRON sano	TF binding site mE1_TFBS_cad
3R	4329691	3R_4329691_SNP [dm3] 3R_8503969_SNP [dm6]	A	T	1.729e^-4	0.743	INTERGENIC
X	5812351	X_5812351_SNP [dm3] X_5918318_SNP [dm6]	A	G	1.734e^-4	0.743	INTRON CG3726	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25261801	3R_25261801_SNP [dm3] 3R_29436079_SNP [dm6]	T	A	1.745e^-4	0.743	INTRON Ptp99A
X	6119342	X_6119342_DEL [dm3] X_6225309_DEL [dm6]	AA	A	1.746e^-4	0.743	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	11852819	X_11852819_SNP [dm3] X_11958786_SNP [dm6]	A	T	1.746e^-4	0.743	INTRON cac
3L	8617308	3L_8617308_INS [dm3] 3L_8624208_INS [dm6]	A	AAGGTAATTTGTTGTTA...	1.750e^-4	0.743	UPSTREAM Zasp66 & 1 other INTERGENIC
2L	5500032	2L_5500032_SNP [dm3] 2L_5500032_SNP [dm6]	G	A	1.753e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5500209	2L_5500209_SNP [dm3] 2L_5500209_SNP [dm6]	T	A	1.753e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8114508	2R_8114508_SNP [dm3] 2R_12227003_SNP [dm6]	C	T	1.754e^-4	0.743	UPSTREAM CG8854 INTRON CG8854
3R	26869106	3R_26869106_SNP [dm3] 3R_31043384_SNP [dm6]	C	T	1.759e^-4	0.743	SPLICE_SITE_REGION CanA1 INTRON CanA1
3L	9258826	3L_9258826_SNP [dm3] 3L_9265726_SNP [dm6]	G	T	1.762e^-4	0.743	INTRON GluRIB
2R	12073840	2R_12073840_SNP [dm3] 2R_16186335_SNP [dm6]	T	A	1.763e^-4	0.743	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6276698	2R_6276698_SNP [dm3] 2R_10389193_SNP [dm6]	A	T	1.772e^-4	0.743	INTRON CG42732
3R	25261852	3R_25261852_INS [dm3] 3R_29436130_INS [dm6]	T	TAAACTT	1.777e^-4	0.743	INTRON Ptp99A
2R	12257754	2R_12257754_SNP [dm3] 2R_16370249_SNP [dm6]	A	C	1.779e^-4	0.743	INTERGENIC
3L	16892005	3L_16892005_SNP [dm3] 3L_16898905_SNP [dm6]	T	C	1.790e^-4	0.743	UPSTREAM Lmpt INTRON Lmpt
3L	5521552	3L_5521552_SNP [dm3] 3L_5528452_SNP [dm6]	C	G	1.798e^-4	0.743	INTRON Lkr
3R	13977759	3R_13977759_SNP [dm3] 3R_18152037_SNP [dm6]	T	C	1.800e^-4	0.743	UPSTREAM CG14316 INTERGENIC
2L	1969761	2L_1969761_DEL [dm3] 2L_1969761_DEL [dm6]	TG	T	1.804e^-4	0.743	INTRON erm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	19569957	3L_19569957_SNP [dm3] 3L_19576857_SNP [dm6]	A	G	1.804e^-4	0.743	INTRON Shal
2R	17927399	2R_17927399_SNP [dm3] 2R_22039894_SNP [dm6]	G	A	1.805e^-4	0.743	UPSTREAM CG34370 INTERGENIC
3R	9895686	3R_9895686_SNP [dm3] 3R_14069964_SNP [dm6]	C	T	1.810e^-4	0.743	INTRON foxo
3R	26176100	3R_26176100_SNP [dm3] 3R_30350378_SNP [dm6]	C	A	1.813e^-4	0.743	INTRON hdc
X	12908402	X_12908402_SNP [dm3] X_13014369_SNP [dm6]	T	A	1.817e^-4	0.743	INTRON rad
2R	19573384	2R_19573384_SNP [dm3] 2R_23685861_SNP [dm6]	T	A	1.821e^-4	0.743	UPSTREAM l_2_efl INTRON St3
3L	19590381	3L_19590381_SNP [dm3] 3L_19597281_SNP [dm6]	T	A	1.823e^-4	0.743	SYNONYMOUS_CODING ash1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4836556	3L_4836556_SNP [dm3] 3L_4836556_SNP [dm6]	C	T	1.827e^-4	0.743	INTERGENIC
X	20469250	X_20469250_SNP [dm3] X_20598223_SNP [dm6]	C	T	1.832e^-4	0.743	INTRON RunxA
3L	5006157	3L_5006157_SNP [dm3] 3L_5006157_SNP [dm6]	T	A	1.833e^-4	0.743	INTRON Con
X	11854017	X_11854017_SNP [dm3] X_11959984_SNP [dm6]	A	G	1.845e^-4	0.743	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1969627	2L_1969627_SNP [dm3] 2L_1969627_SNP [dm6]	T	A	1.850e^-4	0.743	INTRON erm	TF binding site BDTNP1_TFBS_dl
X	20827108	X_20827108_SNP [dm3] X_20956081_SNP [dm6]	A	G	1.856e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15512394	2R_15512394_SNP [dm3] 2R_19624889_SNP [dm6]	A	G	1.859e^-4	0.743	INTRON sm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18806204	3L_18806204_SNP [dm3] 3L_18813104_SNP [dm6]	C	T	1.860e^-4	0.743	INTRON CG14073
3L	10814321	3L_10814321_SNP [dm3] 3L_10821221_SNP [dm6]	C	T	1.864e^-4	0.743	INTERGENIC
X	12151795	X_12151795_SNP [dm3] X_12257762_SNP [dm6]	A	C	1.864e^-4	0.743	INTRON Ten-a
2R	6280318	2R_6280318_SNP [dm3] 2R_10392813_SNP [dm6]	C	T	1.870e^-4	0.743	INTRON CG42732
3L	11649711	3L_11649711_SNP [dm3] 3L_11656611_SNP [dm6]	T	A	1.880e^-4	0.743	UPSTREAM mir-274 INTRON CG32085
3R	4296538	3R_4296538_SNP [dm3] 3R_8470816_SNP [dm6]	A	T	1.888e^-4	0.743	INTRON CG45263
3L	12283172	3L_12283172_SNP [dm3] 3L_12290072_SNP [dm6]	A	G	1.900e^-4	0.743	DOWNSTREAM CG4328 EXON CR45658	TF binding site BDTNP1_TFBS_prd
2L	9673444	2L_9673444_SNP [dm3] 2L_9673444_SNP [dm6]	A	T	1.901e^-4	0.743	INTERGENIC
3L	311018	3L_311018_DEL [dm3] 3L_311018_DEL [dm6]	ACA	A	1.902e^-4	0.743	INTRON fwd	TF binding site BDTNP1_TFBS_z
2R	19573583	2R_19573583_INS [dm3] 2R_23686060_INS [dm6]	T	TCCT	1.913e^-4	0.743	UPSTREAM l_2_efl INTRON St3
3L	15623961	3L_15623961_SNP [dm3] 3L_15630861_SNP [dm6]	A	T	1.919e^-4	0.743	INTRON comm3
2R	15155037	2R_15155037_SNP [dm3] 2R_19267532_SNP [dm6]	G	A	1.920e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	8994078	2L_8994078_SNP [dm3] 2L_8994078_SNP [dm6]	G	A	1.932e^-4	0.743	UTR_3_PRIME alien UPSTREAM CG17906 DOWNSTREAM CG9555 & 1 other
2L	11859611	2L_11859611_SNP [dm3] 2L_11859611_SNP [dm6]	G	C	1.935e^-4	0.743	INTRON Pde1c
3R	15757621	3R_15757621_SNP [dm3] 3R_19931899_SNP [dm6]	A	T	1.935e^-4	0.743	UTR_3_PRIME mira DOWNSTREAM mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11862105	2L_11862105_SNP [dm3] 2L_11862105_SNP [dm6]	C	A	1.944e^-4	0.743	INTRON Pde1c
3R	17293823	3R_17293823_SNP [dm3] 3R_21468101_SNP [dm6]	T	C	1.945e^-4	0.743	INTERGENIC
3L	7262979	3L_7262979_SNP [dm3] 3L_7269879_SNP [dm6]	C	T	1.952e^-4	0.743	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1670261	3L_1670261_SNP [dm3] 3L_1670261_SNP [dm6]	G	T	1.952e^-4	0.743	UPSTREAM RabX5 DOWNSTREAM CG13930 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	20824984	X_20824984_SNP [dm3] X_20953957_SNP [dm6]	T	C	1.952e^-4	0.743	INTERGENIC
2L	9398110	2L_9398110_SNP [dm3] 2L_9398110_SNP [dm6]	G	C	1.955e^-4	0.743	UPSTREAM CG4438 INTRON Shawl
X	10000232	X_10000232_INS [dm3] X_10106199_INS [dm6]	C	CTC	1.956e^-4	0.743	INTRON RhoU	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7581572	2L_7581572_SNP [dm3] 2L_7581572_SNP [dm6]	A	T	1.961e^-4	0.743	UPSTREAM Spn28B INTERGENIC
2L	13236930	2L_13236930_SNP [dm3] 2L_13236930_SNP [dm6]	A	G	1.962e^-4	0.743	INTRON CG5867
3L	8614326	3L_8614326_SNP [dm3] 3L_8621226_SNP [dm6]	C	T	1.965e^-4	0.743	DOWNSTREAM GAPsec INTRON S-Lap2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22013826	2L_22013826_SNP [dm3] 2L_22013826_SNP [dm6]	G	A	1.967e^-4	0.743	INTERGENIC
2R	17302589	2R_17302589_SNP [dm3] 2R_21415084_SNP [dm6]	G	C	1.970e^-4	0.743	INTRON Sdc	TF binding site mE1_TFBS_inv
3R	25604977	3R_25604977_SNP [dm3] 3R_29779255_SNP [dm6]	A	T	1.975e^-4	0.743	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3L	15957883	3L_15957883_SNP [dm3] 3L_15964783_SNP [dm6]	G	A	1.981e^-4	0.743	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24836860	3R_24836860_SNP [dm3] 3R_29011138_SNP [dm6]	C	G	1.983e^-4	0.743	INTRON wat
3R	26209538	3R_26209538_SNP [dm3] 3R_30383816_SNP [dm6]	G	A	1.986e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7266444	3L_7266444_SNP [dm3] 3L_7273344_SNP [dm6]	G	T	1.987e^-4	0.743	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
3L	7803370	3L_7803370_SNP [dm3] 3L_7810270_SNP [dm6]	T	A	1.992e^-4	0.743	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3038411	3R_3038411_INS [dm3] 3R_7212689_INS [dm6]	T	TATATATGCATATTAAA...	1.992e^-4	0.743	INTERGENIC
2R	19573464	2R_19573464_SNP [dm3] 2R_23685941_SNP [dm6]	T	A	1.993e^-4	0.743	UPSTREAM l_2_efl INTRON St3
2L	5522999	2L_5522999_DEL [dm3] 2L_5522999_DEL [dm6]	AA	C	2.003e^-4	0.743	INTRON CG7371	TF binding site mE1_TFBS_sens
X	20469295	X_20469295_SNP [dm3] X_20598268_SNP [dm6]	C	T	2.004e^-4	0.743	INTRON RunxA
3L	9771681	3L_9771681_SNP [dm3] 3L_9778581_SNP [dm6]	G	A	2.007e^-4	0.743	INTRON CG8177	TF binding site mE1_TFBS_inv
3R	489121	3R_489121_SNP [dm3] 3R_4663399_SNP [dm6]	C	T	2.013e^-4	0.743	INTRON CG43427	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3483509	X_3483509_SNP [dm3] X_3589476_SNP [dm6]	A	C	2.020e^-4	0.743	INTRON AstA-R1
3R	21995433	3R_21995433_SNP [dm3] 3R_26169711_SNP [dm6]	T	A	2.021e^-4	0.743	INTERGENIC
3R	15197708	3R_15197708_SNP [dm3] 3R_19371986_SNP [dm6]	C	A	2.024e^-4	0.743	INTRON Ino80
2R	12073017	2R_12073017_SNP [dm3] 2R_16185512_SNP [dm6]	T	C	2.032e^-4	0.743	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	12283354	3L_12283354_SNP [dm3] 3L_12290254_SNP [dm6]	C	T	2.040e^-4	0.743	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	17778655	2L_17778655_SNP [dm3] 2L_17778655_SNP [dm6]	C	G	2.043e^-4	0.743	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	11408086	X_11408086_SNP [dm3] X_11514053_SNP [dm6]	T	A	2.044e^-4	0.743	INTRON Drak
2R	15027922	2R_15027922_SNP [dm3] 2R_19140417_SNP [dm6]	C	T	2.045e^-4	0.743	SYNONYMOUS_CODING CG15111	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9676496	2R_9676496_SNP [dm3] 2R_13788991_SNP [dm6]	T	C	2.047e^-4	0.743	INTERGENIC
2R	11372488	2R_11372488_SNP [dm3] 2R_15484983_SNP [dm6]	G	T	2.047e^-4	0.743	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	19568413	3L_19568413_SNP [dm3] 3L_19575313_SNP [dm6]	T	A	2.048e^-4	0.743	INTRON Shal
3L	8607457	3L_8607457_DEL [dm3] 3L_8614357_DEL [dm6]	TGGCAT	T	2.052e^-4	0.743	INTRON CG6282
2L	9230337	2L_9230337_SNP [dm3] 2L_9230337_SNP [dm6]	C	A	2.063e^-4	0.743	INTRON tai	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15203838	3R_15203838_INS [dm3] 3R_19378116_INS [dm6]	T	TCTTT	2.063e^-4	0.743	UPSTREAM CG31245 INTRON Ino80	TF binding site mE1_TFBS_sens
X	3483508	X_3483508_SNP [dm3] X_3589475_SNP [dm6]	G	A	2.073e^-4	0.743	INTRON AstA-R1
2L	6848039	2L_6848039_INS [dm3] 2L_6848039_INS [dm6]	C	CGC	2.075e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	9079049	2L_9079049_SNP [dm3] 2L_9079049_SNP [dm6]	G	C	2.081e^-4	0.743	INTERGENIC
3R	6614908	3R_6614908_SNP [dm3] 3R_10789186_SNP [dm6]	A	C	2.088e^-4	0.743	SYNONYMOUS_CODING Mcm5 UPSTREAM Art1	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
2R	14195793	2R_14195793_SNP [dm3] 2R_18308288_SNP [dm6]	A	G	2.089e^-4	0.743	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2L	5508370	2L_5508370_SNP [dm3] 2L_5508370_SNP [dm6]	A	G	2.090e^-4	0.743	INTERGENIC
X	8084877	X_8084877_SNP [dm3] X_8190844_SNP [dm6]	G	T	2.093e^-4	0.743	INTRON sdt
2L	21929779	2L_21929779_SNP [dm3] 2L_21929779_SNP [dm6]	G	A	2.095e^-4	0.743	UPSTREAM CR45334 INTERGENIC
X	6119437	X_6119437_SNP [dm3] X_6225404_SNP [dm6]	C	A	2.095e^-4	0.743	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16362144	2R_16362144_SNP [dm3] 2R_20474639_SNP [dm6]	C	T	2.098e^-4	0.743	INTRON CG12484
2L	15309762	2L_15309762_SNP [dm3] 2L_15309762_SNP [dm6]	C	G	2.099e^-4	0.743	INTERGENIC
2L	9191436	2L_9191436_SNP [dm3] 2L_9191436_SNP [dm6]	T	C	2.104e^-4	0.743	INTRON tai
X	6119236	X_6119236_SNP [dm3] X_6225203_SNP [dm6]	C	T	2.106e^-4	0.743	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11300212	2L_11300212_SNP [dm3] 2L_11300212_SNP [dm6]	C	A	2.108e^-4	0.743	INTERGENIC
3R	25668873	3R_25668873_SNP [dm3] 3R_29843151_SNP [dm6]	T	C	2.114e^-4	0.743	INTRON Cad99C
3R	18474292	3R_18474292_SNP [dm3] 3R_22648570_SNP [dm6]	C	G	2.121e^-4	0.743	INTRON CG45058
2L	13093873	2L_13093873_SNP [dm3] 2L_13093873_SNP [dm6]	C	G	2.124e^-4	0.743	INTERGENIC
3R	8538954	3R_8538954_SNP [dm3] 3R_12713232_SNP [dm6]	A	C	2.125e^-4	0.743	UTR_3_PRIME Men UPSTREAM mus308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sbb
2R	15006361	2R_15006361_SNP [dm3] 2R_19118856_SNP [dm6]	T	C	2.129e^-4	0.743	SYNONYMOUS_CODING 5-HT1A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	9666909	3L_9666909_SNP [dm3] 3L_9673809_SNP [dm6]	T	A	2.133e^-4	0.743	INTRON fry
3R	19640066	3R_19640066_SNP [dm3] 3R_23814344_SNP [dm6]	C	T	2.135e^-4	0.743	SYNONYMOUS_CODING eIF4G2 INTRON CG34355 & 1 other
3L	7909156	3L_7909156_SNP [dm3] 3L_7916056_SNP [dm6]	C	T	2.152e^-4	0.743	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	16759890	X_16759890_SNP [dm3] X_16865857_SNP [dm6]	G	A	2.155e^-4	0.743	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2L	7581603	2L_7581603_SNP [dm3] 2L_7581603_SNP [dm6]	A	G	2.160e^-4	0.743	UPSTREAM Spn28B INTERGENIC
3L	18007473	3L_18007473_SNP [dm3] 3L_18014373_SNP [dm6]	A	T	2.173e^-4	0.743	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	17647629	2R_17647629_SNP [dm3] 2R_21760124_SNP [dm6]	T	A	2.178e^-4	0.743	INTERGENIC
3L	1902014	3L_1902014_SNP [dm3] 3L_1902014_SNP [dm6]	C	T	2.182e^-4	0.743	UTR_3_PRIME CG1887 INTRON CG1887
3L	4840543	3L_4840543_SNP [dm3] 3L_4840543_SNP [dm6]	A	T	2.188e^-4	0.743	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18227883	2R_18227883_SNP [dm3] 2R_22340378_SNP [dm6]	G	T	2.189e^-4	0.743	INTRON Liprin-gamma	TF binding site mE1_TFBS_chinmo
3R	5096796	3R_5096796_SNP [dm3] 3R_9271074_SNP [dm6]	C	T	2.194e^-4	0.743	DOWNSTREAM Vps16A INTERGENIC
3R	11008654	3R_11008654_SNP [dm3] 3R_15182932_SNP [dm6]	G	T	2.199e^-4	0.743	INTRON Gyc88E
2R	18723941	2R_18723941_SNP [dm3] 2R_22836418_SNP [dm6]	C	T	2.200e^-4	0.743	SYNONYMOUS_CODING CG12490 UPSTREAM CG9825
2L	10693592	2L_10693592_SNP [dm3] 2L_10693592_SNP [dm6]	T	C	2.207e^-4	0.743	NON_SYNONYMOUS_CODING CG17108	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	15112481	3R_15112481_SNP [dm3] 3R_19286759_SNP [dm6]	T	A	2.217e^-4	0.743	INTERGENIC
2L	17779078	2L_17779078_SNP [dm3] 2L_17779078_SNP [dm6]	T	C	2.232e^-4	0.743	UPSTREAM CadN INTERGENIC
3L	15957664	3L_15957664_SNP [dm3] 3L_15964564_SNP [dm6]	A	G	2.233e^-4	0.743	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19923237	2R_19923237_SNP [dm3] 2R_24035714_SNP [dm6]	T	C	2.233e^-4	0.743	SYNONYMOUS_CODING MAN1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9200038	2L_9200038_SNP [dm3] 2L_9200038_SNP [dm6]	C	T	2.235e^-4	0.743	INTRON tai
3L	12615005	3L_12615005_DEL [dm3] 3L_12621905_DEL [dm6]	AAA	C	2.242e^-4	0.743	DOWNSTREAM caup INTERGENIC
3L	15420051	3L_15420051_SNP [dm3] 3L_15426951_SNP [dm6]	A	G	2.244e^-4	0.743	INTERGENIC
2R	17215276	2R_17215276_SNP [dm3] 2R_21327771_SNP [dm6]	C	G	2.248e^-4	0.743	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Me28S-A2589b DOWNSTREAM snoRNA:Psi28S-3316a & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10534077	3R_10534077_SNP [dm3] 3R_14708355_SNP [dm6]	G	A	2.254e^-4	0.743	INTRON kibra
3R	15356379	3R_15356379_SNP [dm3] 3R_19530657_SNP [dm6]	T	C	2.257e^-4	0.743	INTRON Dys	TF binding site BDTNP1_TFBS_dl
2R	1352419	2R_1352419_SNP [dm3] 2R_5464914_SNP [dm6]	G	T	2.263e^-4	0.743	INTERGENIC	transposable element FlyBase
3L	11940306	3L_11940306_DEL [dm3] 3L_11947206_DEL [dm6]	TAGCCAAAT	T	2.271e^-4	0.743	UPSTREAM CG7252 INTERGENIC
3R	666945	3R_666945_SNP [dm3] 3R_4841223_SNP [dm6]	T	A	2.277e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7581569	2L_7581569_SNP [dm3] 2L_7581569_SNP [dm6]	T	A	2.278e^-4	0.743	UPSTREAM Spn28B INTERGENIC
2L	8590379	2L_8590379_SNP [dm3] 2L_8590379_SNP [dm6]	C	T	2.280e^-4	0.743	INTRON Sema-1a EXON CR43855
2L	13404092	2L_13404092_SNP [dm3] 2L_13404092_SNP [dm6]	A	G	2.283e^-4	0.743	INTRON CG7110
2R	18855621	2R_18855621_SNP [dm3] 2R_22968098_SNP [dm6]	T	C	2.287e^-4	0.743	INTERGENIC
2L	14304576	2L_14304576_SNP [dm3] 2L_14304576_SNP [dm6]	G	A	2.289e^-4	0.743	INTRON wb	TF binding site mE1_TFBS_inv
X	9076789	X_9076789_SNP [dm3] X_9182756_SNP [dm6]	A	T	2.290e^-4	0.743	UTR_3_PRIME mei-P26
X	5050098	X_5050098_DEL [dm3] X_5156065_DEL [dm6]	GG	G	2.297e^-4	0.743	INTRON rg & 1 other
3L	4528478	3L_4528478_SNP [dm3] 3L_4528478_SNP [dm6]	G	T	2.300e^-4	0.743	INTRON Tie
3L	9340927	3L_9340927_SNP [dm3] 3L_9347827_SNP [dm6]	C	T	2.301e^-4	0.743	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
3L	7803402	3L_7803402_SNP [dm3] 3L_7810302_SNP [dm6]	T	A	2.310e^-4	0.743	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4532463	3L_4532463_SNP [dm3] 3L_4532463_SNP [dm6]	G	T	2.313e^-4	0.743	UPSTREAM Tie & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7779087	2L_7779087_DEL [dm3] 2L_7779087_DEL [dm6]	TGATATACATA...	T	2.313e^-4	0.743	UPSTREAM Uro INTERGENIC
2L	10572928	2L_10572928_SNP [dm3] 2L_10572928_SNP [dm6]	G	A	2.316e^-4	0.743	INTRON Trim9
2R	17880062	2R_17880062_SNP [dm3] 2R_21992557_SNP [dm6]	T	C	2.322e^-4	0.743	INTRON CG34370
2L	5499546	2L_5499546_SNP [dm3] 2L_5499546_SNP [dm6]	A	C	2.336e^-4	0.743	INTERGENIC
3R	17901668	3R_17901668_SNP [dm3] 3R_22075946_SNP [dm6]	A	T	2.337e^-4	0.743	INTRON how
3R	18474101	3R_18474101_DEL [dm3] 3R_22648379_DEL [dm6]	AAAAAATATTATTGCGTTTA...	A	2.338e^-4	0.743	INTRON CG45058
X	20824995	X_20824995_INS [dm3] X_20953968_INS [dm6]	A	AAAAAA	2.339e^-4	0.743	INTERGENIC
3R	2877647	3R_2877647_SNP [dm3] 3R_7051925_SNP [dm6]	C	T	2.343e^-4	0.743	UPSTREAM Sodh-1 INTERGENIC	TF binding site mE1_TFBS_sens
2R	8114726	2R_8114726_SNP [dm3] 2R_12227221_SNP [dm6]	A	G	2.355e^-4	0.743	UPSTREAM CG8854 INTRON CG8854
3L	1272726	3L_1272726_SNP [dm3] 3L_1272726_SNP [dm6]	A	G	2.355e^-4	0.743	INTRON CG9134	TF binding site mE1_TFBS_cad
2R	17826489	2R_17826489_SNP [dm3] 2R_21938984_SNP [dm6]	T	C	2.358e^-4	0.743	INTRON Fili
2L	3377729	2L_3377729_SNP [dm3] 2L_3377729_SNP [dm6]	C	A	2.358e^-4	0.743	SYNONYMOUS_CODING Ptpa UPSTREAM CG9662	TF binding site mE1_TFBS_sens
2L	9078985	2L_9078985_SNP [dm3] 2L_9078985_SNP [dm6]	A	G	2.361e^-4	0.743	DOWNSTREAM CG12439 INTERGENIC
3R	14448271	3R_14448271_SNP [dm3] 3R_18622549_SNP [dm6]	C	T	2.362e^-4	0.743	INTRON qin	TF binding site mE1_TFBS_inv
3L	18804244	3L_18804244_DEL [dm3] 3L_18811144_DEL [dm6]	AAA	A	2.364e^-4	0.743	INTRON CG14073	TF binding site mE1_TFBS_kn
2L	3906643	2L_3906643_SNP [dm3] 2L_3906643_SNP [dm6]	G	A	2.364e^-4	0.743	INTRON fred
3L	2570576	3L_2570576_SNP [dm3] 3L_2570576_SNP [dm6]	T	A	2.370e^-4	0.743	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13137386	2R_13137386_SNP [dm3] 2R_17249881_SNP [dm6]	G	C	2.376e^-4	0.743	INTRON mbl
3R	13210276	3R_13210276_SNP [dm3] 3R_17384554_SNP [dm6]	A	T	2.379e^-4	0.743	INTRON Brf & 1 other
2L	3905948	2L_3905948_SNP [dm3] 2L_3905948_SNP [dm6]	A	G	2.380e^-4	0.743	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12029576	X_12029576_SNP [dm3] X_12135543_SNP [dm6]	T	A	2.380e^-4	0.743	INTRON Ten-a
3R	15064138	3R_15064138_DEL [dm3] 3R_19238416_DEL [dm6]	TCCCTGAAAA	T	2.381e^-4	0.743	INTRON unc79	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
X	20827598	X_20827598_SNP [dm3] X_20956571_SNP [dm6]	C	A	2.382e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
X	20469219	X_20469219_SNP [dm3] X_20598192_SNP [dm6]	C	T	2.386e^-4	0.743	INTRON RunxA
2R	8939177	2R_8939177_SNP [dm3] 2R_13051672_SNP [dm6]	C	T	2.389e^-4	0.743	INTERGENIC
3R	14754512	3R_14754512_SNP [dm3] 3R_18928790_SNP [dm6]	G	A	2.391e^-4	0.743	UPSTREAM CG42613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6128016	X_6128016_SNP [dm3] X_6233983_SNP [dm6]	C	T	2.394e^-4	0.743	UTR_3_PRIME CG14446 DOWNSTREAM CG14446
2L	12723915	2L_12723915_SNP [dm3] 2L_12723915_SNP [dm6]	C	T	2.398e^-4	0.743	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
3L	8806725	3L_8806725_SNP [dm3] 3L_8813625_SNP [dm6]	G	A	2.407e^-4	0.743	INTERGENIC
3L	14345663	3L_14345663_SNP [dm3] 3L_14352563_SNP [dm6]	A	G	2.408e^-4	0.743	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17778656	2L_17778656_DEL [dm3] 2L_17778656_DEL [dm6]	GATAT	G	2.412e^-4	0.743	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10273956	2L_10273956_SNP [dm3] 2L_10273956_SNP [dm6]	T	C	2.413e^-4	0.743	INTRON Utx
3L	10368699	3L_10368699_SNP [dm3] 3L_10375599_SNP [dm6]	T	C	2.415e^-4	0.743	INTERGENIC
2R	12073844	2R_12073844_SNP [dm3] 2R_16186339_SNP [dm6]	A	T	2.416e^-4	0.743	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19131813	3R_19131813_SNP [dm3] 3R_23306091_SNP [dm6]	G	A	2.420e^-4	0.743	INTRON pnt
3L	9258825	3L_9258825_SNP [dm3] 3L_9265725_SNP [dm6]	C	A	2.423e^-4	0.743	INTRON GluRIB
X	5848800	X_5848800_SNP [dm3] X_5954767_SNP [dm6]	A	G	2.426e^-4	0.743	UPSTREAM CG6067 DOWNSTREAM CG6048 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
X	8287161	X_8287161_SNP [dm3] X_8393128_SNP [dm6]	A	G	2.427e^-4	0.743	INTERGENIC
2R	8536224	2R_8536224_SNP [dm3] 2R_12648719_SNP [dm6]	T	C	2.438e^-4	0.743	UPSTREAM CG8785 INTERGENIC
2L	17955275	2L_17955275_SNP [dm3] 2L_17955275_SNP [dm6]	C	T	2.440e^-4	0.743	INTERGENIC
2R	11347614	2R_11347614_SNP [dm3] 2R_15460109_SNP [dm6]	A	T	2.441e^-4	0.743	INTRON CG43729
3R	17641645	3R_17641645_SNP [dm3] 3R_21815923_SNP [dm6]	T	A	2.447e^-4	0.743	INTRON CASK	TF binding site mE1_TFBS_sens
2L	5487191	2L_5487191_SNP [dm3] 2L_5487191_SNP [dm6]	T	A	2.457e^-4	0.743	EXON CR45287	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9514711	2L_9514711_SNP [dm3] 2L_9514711_SNP [dm6]	A	G	2.460e^-4	0.743	INTRON CG33298
3L	8548330	3L_8548330_SNP [dm3] 3L_8555230_SNP [dm6]	G	T	2.461e^-4	0.743	INTRON rhea
X	12676000	X_12676000_SNP [dm3] X_12781967_SNP [dm6]	A	C	2.468e^-4	0.743	INTRON CG32647
2L	7902722	2L_7902722_SNP [dm3] 2L_7902722_SNP [dm6]	C	T	2.470e^-4	0.743	INTRON Snoo
2L	17779079	2L_17779079_SNP [dm3] 2L_17779079_SNP [dm6]	G	A	2.474e^-4	0.743	UPSTREAM CadN INTERGENIC
2L	2303085	2L_2303085_SNP [dm3] 2L_2303085_SNP [dm6]	T	A	2.477e^-4	0.743	INTERGENIC
3R	22447129	3R_22447129_SNP [dm3] 3R_26621407_SNP [dm6]	A	G	2.478e^-4	0.743	UPSTREAM TwdlP INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9911920	2L_9911920_DEL [dm3] 2L_9911920_DEL [dm6]	TG	T	2.480e^-4	0.743	UPSTREAM Srp54 INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13210250	3R_13210250_SNP [dm3] 3R_17384528_SNP [dm6]	G	T	2.483e^-4	0.743	INTRON Brf & 1 other
2L	7900697	2L_7900697_SNP [dm3] 2L_7900697_SNP [dm6]	T	A	2.483e^-4	0.743	INTRON Snoo
2R	1866850	2R_1866850_SNP [dm3] 2R_5979345_SNP [dm6]	G	A	2.484e^-4	0.743	SYNONYMOUS_CODING mle START_GAINED mle UTR_5_PRIME mle
3L	7803403	3L_7803403_DEL [dm3] 3L_7810303_DEL [dm6]	ATG	A	2.486e^-4	0.743	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18051596	3L_18051596_SNP [dm3] 3L_18058496_SNP [dm6]	T	C	2.488e^-4	0.743	SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	12640402	2R_12640402_SNP [dm3] 2R_16752897_SNP [dm6]	C	T	2.495e^-4	0.743	UTR_3_PRIME unc-104
3R	14523018	3R_14523018_SNP [dm3] 3R_18697296_SNP [dm6]	A	C	2.499e^-4	0.743	INTERGENIC
2R	1354357	2R_1354357_SNP [dm3] 2R_5466852_SNP [dm6]	G	T	2.500e^-4	0.743	INTERGENIC	transposable element FlyBase
2L	5070807	2L_5070807_SNP [dm3] 2L_5070807_SNP [dm6]	A	T	2.506e^-4	0.743	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2R	6230497	2R_6230497_SNP [dm3] 2R_10342992_SNP [dm6]	A	C	2.506e^-4	0.743	INTRON CG42732
2L	13581911	2L_13581911_SNP [dm3] 2L_13581911_SNP [dm6]	G	A	2.510e^-4	0.743	UPSTREAM CR44973 INTRON kuz	transposable element FlyBase
2L	17778625	2L_17778625_MNP [dm3] 2L_17778625_MNP [dm6]	GTT	TCG	2.514e^-4	0.743	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18802231	3L_18802231_SNP [dm3] 3L_18809131_SNP [dm6]	G	A	2.517e^-4	0.743	SYNONYMOUS_CODING CG14073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13210262	3R_13210262_SNP [dm3] 3R_17384540_SNP [dm6]	A	T	2.525e^-4	0.743	INTRON Brf & 1 other
3R	15067969	3R_15067969_SNP [dm3] 3R_19242247_SNP [dm6]	A	G	2.536e^-4	0.743	UTR_3_PRIME unc79 INTRON unc79	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6118428	X_6118428_SNP [dm3] X_6224395_SNP [dm6]	T	C	2.538e^-4	0.743	UPSTREAM sqh INTRON sqh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7129516	2R_7129516_SNP [dm3] 2R_11242011_SNP [dm6]	G	A	2.539e^-4	0.743	SYNONYMOUS_CODING Listericin
2R	17647628	2R_17647628_SNP [dm3] 2R_21760123_SNP [dm6]	C	A	2.541e^-4	0.743	INTERGENIC
3R	10083636	3R_10083636_SNP [dm3] 3R_14257914_SNP [dm6]	G	A	2.551e^-4	0.743	DOWNSTREAM CG43179 INTRON Aats-met
3R	13210232	3R_13210232_SNP [dm3] 3R_17384510_SNP [dm6]	A	C	2.552e^-4	0.743	INTRON Brf & 1 other
3R	954414	3R_954414_SNP [dm3] 3R_5128692_SNP [dm6]	C	T	2.555e^-4	0.743	SYNONYMOUS_CODING CG12007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15513919	2R_15513919_SNP [dm3] 2R_19626414_SNP [dm6]	A	T	2.560e^-4	0.743	INTRON sm
2L	3820711	2L_3820711_SNP [dm3] 2L_3820711_SNP [dm6]	A	G	2.561e^-4	0.743	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	5099295	3R_5099295_SNP [dm3] 3R_9273573_SNP [dm6]	C	A	2.561e^-4	0.743	INTERGENIC
3L	14345763	3L_14345763_SNP [dm3] 3L_14352663_SNP [dm6]	A	T	2.569e^-4	0.743	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8133874	3R_8133874_SNP [dm3] 3R_12308152_SNP [dm6]	A	C	2.574e^-4	0.743	INTERGENIC
3R	20801971	3R_20801971_SNP [dm3] 3R_24976249_SNP [dm6]	G	C	2.577e^-4	0.743	INTERGENIC
2L	3906869	2L_3906869_SNP [dm3] 2L_3906869_SNP [dm6]	A	T	2.581e^-4	0.743	INTRON fred
3R	8209837	3R_8209837_SNP [dm3] 3R_12384115_SNP [dm6]	T	C	2.581e^-4	0.743	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	18806248	3L_18806248_SNP [dm3] 3L_18813148_SNP [dm6]	G	C	2.583e^-4	0.743	INTRON CG14073
2L	5443750	2L_5443750_SNP [dm3] 2L_5443750_SNP [dm6]	G	A	2.583e^-4	0.743	INTERGENIC
X	12675997	X_12675997_SNP [dm3] X_12781964_SNP [dm6]	A	G	2.583e^-4	0.743	INTRON CG32647
2R	8536143	2R_8536143_DEL [dm3] 2R_12648638_DEL [dm6]	TAT	T	2.599e^-4	0.743	UPSTREAM CG8785 INTERGENIC
2R	17308194	2R_17308194_SNP [dm3] 2R_21420689_SNP [dm6]	C	T	2.602e^-4	0.743	INTRON Sdc
3L	17704980	3L_17704980_SNP [dm3] 3L_17711880_SNP [dm6]	A	C	2.603e^-4	0.743	INTRON Ccn	TF binding site mE1_TFBS_HSA
2R	9961346	2R_9961346_SNP [dm3] 2R_14073841_SNP [dm6]	C	A	2.606e^-4	0.743	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	19768135	3R_19768135_SNP [dm3] 3R_23942413_SNP [dm6]	T	G	2.607e^-4	0.743	INTRON Gdh	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17950159	2L_17950159_SNP [dm3] 2L_17950159_SNP [dm6]	A	T	2.607e^-4	0.743	INTRON CR44398 EXON CR44397
2R	8550106	2R_8550106_SNP [dm3] 2R_12662601_SNP [dm6]	G	C	2.607e^-4	0.743	UPSTREAM nemy INTRON nemy
3R	9895642	3R_9895642_SNP [dm3] 3R_14069920_SNP [dm6]	C	T	2.611e^-4	0.743	INTRON foxo
2R	12848598	2R_12848598_INS [dm3] 2R_16961093_INS [dm6]	C	CT	2.613e^-4	0.743	UPSTREAM CG9010 INTERGENIC
2L	5500061	2L_5500061_SNP [dm3] 2L_5500061_SNP [dm6]	A	C	2.619e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9876649	2L_9876649_SNP [dm3] 2L_9876649_SNP [dm6]	G	A	2.619e^-4	0.743	INTRON nAChRalpha6
3R	8800266	3R_8800266_SNP [dm3] 3R_12974544_SNP [dm6]	A	G	2.620e^-4	0.743	UPSTREAM CG7381 INTRON CG7381
3R	26575296	3R_26575296_SNP [dm3] 3R_30749574_SNP [dm6]	C	A	2.620e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8802634	3R_8802634_SNP [dm3] 3R_12976912_SNP [dm6]	A	G	2.621e^-4	0.743	INTRON CG7381
2L	7944075	2L_7944075_SNP [dm3] 2L_7944075_SNP [dm6]	G	A	2.622e^-4	0.743	INTRON Snoo
3L	4925116	3L_4925116_SNP [dm3] 3L_4925116_SNP [dm6]	C	T	2.622e^-4	0.743	INTERGENIC
2L	4265038	2L_4265038_SNP [dm3] 2L_4265038_SNP [dm6]	A	T	2.633e^-4	0.743	INTERGENIC
2L	3905940	2L_3905940_SNP [dm3] 2L_3905940_SNP [dm6]	C	T	2.633e^-4	0.743	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	3025967	3R_3025967_SNP [dm3] 3R_7200245_SNP [dm6]	G	A	2.646e^-4	0.743	UTR_3_PRIME lap UPSTREAM CG14609 DOWNSTREAM lap
2L	18114748	2L_18114748_SNP [dm3] 2L_18114748_SNP [dm6]	T	C	2.648e^-4	0.743	SYNONYMOUS_CODING CG15152
2L	7902675	2L_7902675_SNP [dm3] 2L_7902675_SNP [dm6]	C	T	2.656e^-4	0.743	INTRON Snoo
3R	7735135	3R_7735135_DEL [dm3] 3R_11909413_DEL [dm6]	CACCCGATAATTTCCCTTCG...	C	2.663e^-4	0.743	INTRON Cad87A	TF binding site mE1_TFBS_HSA
2L	7900179	2L_7900179_SNP [dm3] 2L_7900179_SNP [dm6]	G	A	2.666e^-4	0.743	INTRON Snoo
X	2592936	X_2592936_SNP [dm3] X_2698903_SNP [dm6]	A	G	2.668e^-4	0.743	SYNONYMOUS_CODING CG2662 UPSTREAM CG2658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	27135735	3R_27135735_SNP [dm3] 3R_31310013_SNP [dm6]	A	C	2.671e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2251504	2L_2251504_SNP [dm3] 2L_2251504_SNP [dm6]	T	A	2.672e^-4	0.743	UPSTREAM Ser12 DOWNSTREAM CG17239 INTERGENIC	TF binding site mE1_TFBS_cad
3L	6387908	3L_6387908_SNP [dm3] 3L_6394808_SNP [dm6]	A	T	2.677e^-4	0.743	INTERGENIC
3L	11072076	3L_11072076_SNP [dm3] 3L_11078976_SNP [dm6]	C	T	2.677e^-4	0.743	UTR_3_PRIME JIL-1 DOWNSTREAM JIL-1 & 1 other
3R	4834428	3R_4834428_SNP [dm3] 3R_9008706_SNP [dm6]	T	A	2.682e^-4	0.743	SPLICE_SITE_REGION CG11983 DOWNSTREAM CG11982 INTRON CG11983
2L	4265064	2L_4265064_SNP [dm3] 2L_4265064_SNP [dm6]	T	A	2.687e^-4	0.743	INTERGENIC
3L	18115450	3L_18115450_INS [dm3] 3L_18122350_INS [dm6]	T	TGTCGAAGAGTCATGAGAAT...	2.694e^-4	0.743	UPSTREAM CG42853 INTERGENIC
2R	11373312	2R_11373312_SNP [dm3] 2R_15485807_SNP [dm6]	T	A	2.700e^-4	0.743	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11373318	2R_11373318_MNP [dm3] 2R_15485813_MNP [dm6]	GTGT	TAAG	2.700e^-4	0.743	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8617181	3L_8617181_SNP [dm3] 3L_8624081_SNP [dm6]	C	A	2.700e^-4	0.743	UPSTREAM Zasp66 & 1 other INTERGENIC
3R	8437287	3R_8437287_INS [dm3] 3R_12611565_INS [dm6]	C	CGGC	2.700e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7933525	3L_7933525_SNP [dm3] 3L_7940425_SNP [dm6]	T	A	2.703e^-4	0.743	INTERGENIC
3R	21221958	3R_21221958_SNP [dm3] 3R_25396236_SNP [dm6]	T	G	2.704e^-4	0.743	INTRON Fur1
2R	14086117	2R_14086117_SNP [dm3] 2R_18198612_SNP [dm6]	G	A	2.705e^-4	0.743	INTERGENIC
2L	7581602	2L_7581602_SNP [dm3] 2L_7581602_SNP [dm6]	G	A	2.709e^-4	0.743	UPSTREAM Spn28B INTERGENIC
3L	9697184	3L_9697184_MNP [dm3] 3L_9704084_MNP [dm6]	ACACA	TTTTT	2.713e^-4	0.743	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9362484	2L_9362484_SNP [dm3] 2L_9362484_SNP [dm6]	G	T	2.715e^-4	0.743	INTERGENIC
X	4019291	X_4019291_SNP [dm3] X_4125258_SNP [dm6]	T	G	2.715e^-4	0.743	SYNONYMOUS_CODING tyf	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11346118	2R_11346118_SNP [dm3] 2R_15458613_SNP [dm6]	G	A	2.716e^-4	0.743	INTRON CG43729
2R	17695783	2R_17695783_SNP [dm3] 2R_21808278_SNP [dm6]	T	C	2.716e^-4	0.743	INTERGENIC
3L	4840590	3L_4840590_SNP [dm3] 3L_4840590_SNP [dm6]	G	C	2.717e^-4	0.743	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	18723098	2R_18723098_SNP [dm3] 2R_22835575_SNP [dm6]	A	T	2.723e^-4	0.743	SYNONYMOUS_CODING CG12490 DOWNSTREAM CG30265
2R	11385969	2R_11385969_SNP [dm3] 2R_15498464_SNP [dm6]	T	C	2.726e^-4	0.743	INTERGENIC
2L	13972972	2L_13972972_SNP [dm3] 2L_13972972_SNP [dm6]	C	G	2.730e^-4	0.743	UPSTREAM He DOWNSTREAM NimB5 & 1 other INTERGENIC
3L	18840873	3L_18840873_SNP [dm3] 3L_18847773_SNP [dm6]	A	C	2.732e^-4	0.743	INTERGENIC
3R	14345445	3R_14345445_SNP [dm3] 3R_18519723_SNP [dm6]	T	A	2.734e^-4	0.743	INTRON fru
2R	12213211	2R_12213211_SNP [dm3] 2R_16325706_SNP [dm6]	T	C	2.746e^-4	0.743	UTR_3_PRIME Vha44 DOWNSTREAM CG4282 & 1 other
2L	3540665	2L_3540665_SNP [dm3] 2L_3540665_SNP [dm6]	G	T	2.748e^-4	0.743	INTRON drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3R	23673577	3R_23673577_SNP [dm3] 3R_27847855_SNP [dm6]	C	T	2.751e^-4	0.743	DOWNSTREAM Or98a INTRON CG34353
2R	17927595	2R_17927595_SNP [dm3] 2R_22040090_SNP [dm6]	C	A	2.753e^-4	0.743	UPSTREAM CG34370 INTERGENIC
2R	11399653	2R_11399653_SNP [dm3] 2R_15512148_SNP [dm6]	C	T	2.755e^-4	0.743	SYNONYMOUS_CODING GalNAc-T1
2L	18388556	2L_18388556_SNP [dm3] 2L_18388556_SNP [dm6]	C	T	2.757e^-4	0.743	SYNONYMOUS_CODING Fas3 INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5092982	3R_5092982_SNP [dm3] 3R_9267260_SNP [dm6]	G	A	2.765e^-4	0.743	NON_SYNONYMOUS_CODING Vps16A UPSTREAM Aats-trp	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	4786286	2L_4786286_SNP [dm3] 2L_4786286_SNP [dm6]	A	G	2.772e^-4	0.743	INTRON CG15630
2R	16326263	2R_16326263_SNP [dm3] 2R_20438758_SNP [dm6]	G	A	2.775e^-4	0.743	INTRON CG12484
2L	6703646	2L_6703646_SNP [dm3] 2L_6703646_SNP [dm6]	T	A	2.777e^-4	0.743	INTRON Tsp
2L	13236920	2L_13236920_SNP [dm3] 2L_13236920_SNP [dm6]	G	A	2.778e^-4	0.743	INTRON CG5867
3R	25261849	3R_25261849_SNP [dm3] 3R_29436127_SNP [dm6]	T	C	2.779e^-4	0.743	INTRON Ptp99A
3R	18640167	3R_18640167_SNP [dm3] 3R_22814445_SNP [dm6]	T	C	2.783e^-4	0.743	DOWNSTREAM CG13840 INTERGENIC
3R	3003641	3R_3003641_SNP [dm3] 3R_7177919_SNP [dm6]	T	G	2.786e^-4	0.743	INTRON sas
3L	12494166	3L_12494166_SNP [dm3] 3L_12501066_SNP [dm6]	C	T	2.800e^-4	0.743	UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
2L	7900689	2L_7900689_SNP [dm3] 2L_7900689_SNP [dm6]	A	G	2.801e^-4	0.743	INTRON Snoo
2R	8540259	2R_8540259_SNP [dm3] 2R_12652754_SNP [dm6]	A	G	2.806e^-4	0.743	UPSTREAM ZnT49B & 1 other INTERGENIC
3L	573317	3L_573317_SNP [dm3] 3L_573317_SNP [dm6]	T	C	2.810e^-4	0.743	NON_SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11261352	X_11261352_SNP [dm3] X_11367319_SNP [dm6]	G	A	2.815e^-4	0.743	SYNONYMOUS_CODING hop	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6118337	X_6118337_SNP [dm3] X_6224304_SNP [dm6]	A	C	2.817e^-4	0.743	UPSTREAM sqh INTRON sqh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	23673631	3R_23673631_SNP [dm3] 3R_27847909_SNP [dm6]	A	T	2.819e^-4	0.743	DOWNSTREAM Or98a INTRON CG34353
3L	1670734	3L_1670734_SNP [dm3] 3L_1670734_SNP [dm6]	T	C	2.819e^-4	0.743	UPSTREAM RabX5 INTRON CG13930	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15322549	3R_15322549_SNP [dm3] 3R_19496827_SNP [dm6]	A	T	2.824e^-4	0.743	INTRON Dys
X	8287164	X_8287164_SNP [dm3] X_8393131_SNP [dm6]	A	T	2.827e^-4	0.743	INTERGENIC
3L	2367815	3L_2367815_SNP [dm3] 3L_2367815_SNP [dm6]	G	T	2.830e^-4	0.743	DOWNSTREAM CG1317 INTERGENIC
2R	10054460	2R_10054460_SNP [dm3] 2R_14166955_SNP [dm6]	G	A	2.835e^-4	0.743	UTR_3_PRIME CG8323 UPSTREAM CG18327	TF binding site mE1_TFBS_chinmo
2R	10033162	2R_10033162_SNP [dm3] 2R_14145657_SNP [dm6]	T	A	2.841e^-4	0.743	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	13621685	2L_13621685_SNP [dm3] 2L_13621685_SNP [dm6]	T	G	2.860e^-4	0.743	INTRON kuz
2L	17941685	2L_17941685_SNP [dm3] 2L_17941685_SNP [dm6]	A	C	2.861e^-4	0.743	INTERGENIC
2R	13303215	2R_13303215_SNP [dm3] 2R_17415710_SNP [dm6]	T	C	2.884e^-4	0.743	SYNONYMOUS_CODING cnk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4840580	3L_4840580_SNP [dm3] 3L_4840580_SNP [dm6]	C	G	2.887e^-4	0.743	UPSTREAM CG13707 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	3673730	2L_3673730_SNP [dm3] 2L_3673730_SNP [dm6]	T	C	2.896e^-4	0.743	INTRON CG34340
3L	15957541	3L_15957541_SNP [dm3] 3L_15964441_SNP [dm6]	T	C	2.897e^-4	0.743	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16733376	2R_16733376_SNP [dm3] 2R_20845871_SNP [dm6]	G	A	2.903e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19108664	3R_19108664_SNP [dm3] 3R_23282942_SNP [dm6]	T	C	2.906e^-4	0.743	SYNONYMOUS_CODING Cdc16	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17993766	3R_17993766_SNP [dm3] 3R_22168044_SNP [dm6]	C	G	2.918e^-4	0.743	INTRON SKIP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
X	12891564	X_12891564_DEL [dm3] X_12997531_DEL [dm6]	CTAC	C	2.929e^-4	0.743	INTRON rad
2R	14168967	2R_14168967_SNP [dm3] 2R_18281462_SNP [dm6]	T	C	2.930e^-4	0.743	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15416974	X_15416974_SNP [dm3] X_15522941_SNP [dm6]	A	T	2.934e^-4	0.743	UPSTREAM Ac13E INTRON Ac13E
2R	11372533	2R_11372533_SNP [dm3] 2R_15485028_SNP [dm6]	C	A	2.945e^-4	0.743	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	13623736	2L_13623736_SNP [dm3] 2L_13623736_SNP [dm6]	C	T	2.947e^-4	0.743	INTRON kuz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9362482	2L_9362482_INS [dm3] 2L_9362482_INS [dm6]	A	ACAC	2.947e^-4	0.743	INTERGENIC
3L	7803399	3L_7803399_SNP [dm3] 3L_7810299_SNP [dm6]	G	C	2.948e^-4	0.743	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11056745	2R_11056745_SNP [dm3] 2R_15169240_SNP [dm6]	A	G	2.952e^-4	0.743	INTRON igl
3L	6888627	3L_6888627_SNP [dm3] 3L_6895527_SNP [dm6]	G	T	2.953e^-4	0.743	INTERGENIC
3R	13215511	3R_13215511_SNP [dm3] 3R_17389789_SNP [dm6]	T	A	2.954e^-4	0.743	UTR_3_PRIME lute INTRON Brf
3L	8142576	3L_8142576_SNP [dm3] 3L_8149476_SNP [dm6]	T	C	2.956e^-4	0.743	INTRON CG13676
3L	12801601	3L_12801601_SNP [dm3] 3L_12808501_SNP [dm6]	T	A	2.956e^-4	0.743	UPSTREAM CG32110 INTRON Sap130	TF binding site mE1_TFBS_cad
2R	8547127	2R_8547127_SNP [dm3] 2R_12659622_SNP [dm6]	A	T	2.957e^-4	0.743	UTR_3_PRIME nemy DOWNSTREAM CG8646
3L	12283352	3L_12283352_SNP [dm3] 3L_12290252_SNP [dm6]	G	A	2.960e^-4	0.743	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	10208904	3L_10208904_SNP [dm3] 3L_10215804_SNP [dm6]	A	G	2.965e^-4	0.743	SYNONYMOUS_CODING CG8065
3R	22456430	3R_22456430_SNP [dm3] 3R_26630708_SNP [dm6]	C	T	2.968e^-4	0.743	SYNONYMOUS_CODING TwdlJ	TF binding site mE1_TFBS_chinmo
2R	8846632	2R_8846632_INS [dm3] 2R_12959127_INS [dm6]	C	CTTGGGGT	2.975e^-4	0.743	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25314098	3R_25314098_SNP [dm3] 3R_29488376_SNP [dm6]	C	G	2.982e^-4	0.743	SYNONYMOUS_CODING CG2321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15198831	3R_15198831_SNP [dm3] 3R_19373109_SNP [dm6]	G	C	2.995e^-4	0.743	DOWNSTREAM CG3581 INTRON Ino80
2L	1986168	2L_1986168_SNP [dm3] 2L_1986168_SNP [dm6]	A	G	3.000e^-4	0.743	INTRON Got2
3R	22441401	3R_22441401_SNP [dm3] 3R_26615679_SNP [dm6]	G	A	3.005e^-4	0.743	INTERGENIC
2L	5427826	2L_5427826_SNP [dm3] 2L_5427826_SNP [dm6]	T	A	3.009e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3628613	2L_3628613_SNP [dm3] 2L_3628613_SNP [dm6]	C	T	3.011e^-4	0.743	INTRON for	TF binding site BDTNP1_TFBS_twi
X	6989605	X_6989605_INS [dm3] X_7095572_INS [dm6]	T	TGCTATT	3.013e^-4	0.743	INTRON Sxl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14676098	2R_14676098_SNP [dm3] 2R_18788593_SNP [dm6]	C	T	3.017e^-4	0.743	INTRON CG15080
2R	12073891	2R_12073891_SNP [dm3] 2R_16186386_SNP [dm6]	T	A	3.020e^-4	0.743	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9396849	2L_9396849_SNP [dm3] 2L_9396849_SNP [dm6]	A	C	3.021e^-4	0.743	DOWNSTREAM CG4438 INTRON Shawl
2R	18709782	2R_18709782_SNP [dm3] 2R_22822259_SNP [dm6]	G	A	3.023e^-4	0.743	DOWNSTREAM CG30271 INTRON CG42284	TF binding site mE1_TFBS_inv
X	8084892	X_8084892_SNP [dm3] X_8190859_SNP [dm6]	G	A	3.027e^-4	0.743	INTRON sdt
3L	8675264	3L_8675264_SNP [dm3] 3L_8682164_SNP [dm6]	T	G	3.036e^-4	0.743	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
X	6119396	X_6119396_INS [dm3] X_6225363_INS [dm6]	A	AATAGCGTTA	3.037e^-4	0.743	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	11106819	3R_11106819_SNP [dm3] 3R_15281097_SNP [dm6]	G	A	3.038e^-4	0.743	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	6007078	2L_6007078_SNP [dm3] 2L_6007078_SNP [dm6]	C	T	3.038e^-4	0.743	UPSTREAM Gal DOWNSTREAM CR43866 & 1 other INTERGENIC
X	12288570	X_12288570_INS [dm3] X_12394537_INS [dm6]	T	TGAATATAATATAATATAAT...	3.043e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	988529	2L_988529_SNP [dm3] 2L_988529_SNP [dm6]	C	T	3.045e^-4	0.743	EXON CR44801	TF binding site mE1_TFBS_chinmo
2L	11300205	2L_11300205_SNP [dm3] 2L_11300205_SNP [dm6]	G	A	3.056e^-4	0.743	INTERGENIC
2R	18284429	2R_18284429_DEL [dm3] 2R_22396924_DEL [dm6]	TATTCGAT	T	3.066e^-4	0.743	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15645001	3R_15645001_SNP [dm3] 3R_19819279_SNP [dm6]	G	A	3.070e^-4	0.743	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18453915	3L_18453915_SNP [dm3] 3L_18460815_SNP [dm6]	C	A	3.071e^-4	0.743	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	10263683	3R_10263683_SNP [dm3] 3R_14437961_SNP [dm6]	A	C	3.072e^-4	0.743	INTRON cv-c
3R	10263719	3R_10263719_SNP [dm3] 3R_14437997_SNP [dm6]	G	A	3.072e^-4	0.743	INTRON cv-c
2R	10294566	2R_10294566_INS [dm3] 2R_14407061_INS [dm6]	T	TC	3.075e^-4	0.743	INTERGENIC
2L	1782654	2L_1782654_SNP [dm3] 2L_1782654_SNP [dm6]	G	A	3.075e^-4	0.743	INTERGENIC	regulatory region REDfly_CRMs
2R	11374077	2R_11374077_SNP [dm3] 2R_15486572_SNP [dm6]	G	C	3.075e^-4	0.743	NON_SYNONYMOUS_CODING CG12964	TF binding site mE1_TFBS_chinmo
2R	14782173	2R_14782173_SNP [dm3] 2R_18894668_SNP [dm6]	A	G	3.081e^-4	0.743	INTRON sano
2R	11373123	2R_11373123_SNP [dm3] 2R_15485618_SNP [dm6]	C	A	3.084e^-4	0.743	DOWNSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	16531073	2R_16531073_SNP [dm3] 2R_20643568_SNP [dm6]	T	C	3.086e^-4	0.743	UPSTREAM DMAP1 INTRON CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13623955	2L_13623955_SNP [dm3] 2L_13623955_SNP [dm6]	G	A	3.095e^-4	0.743	INTRON kuz	TF binding site mE1_TFBS_HSA
2L	1196931	2L_1196931_SNP [dm3] 2L_1196931_SNP [dm6]	G	A	3.101e^-4	0.743	DOWNSTREAM CG5001 INTERGENIC
2L	11299714	2L_11299714_SNP [dm3] 2L_11299714_SNP [dm6]	A	C	3.103e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	19345970	3L_19345970_SNP [dm3] 3L_19352870_SNP [dm6]	A	G	3.104e^-4	0.743	INTRON CG32206
3R	24839093	3R_24839093_SNP [dm3] 3R_29013371_SNP [dm6]	A	G	3.105e^-4	0.743	INTRON wat
2L	4223026	2L_4223026_DEL [dm3] 2L_4223026_DEL [dm6]	GC	G	3.120e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	17778638	2L_17778638_SNP [dm3] 2L_17778638_SNP [dm6]	A	C	3.122e^-4	0.743	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	5211087	3R_5211087_SNP [dm3] 3R_9385365_SNP [dm6]	A	T	3.124e^-4	0.743	INTRON FER
2R	16531028	2R_16531028_SNP [dm3] 2R_20643523_SNP [dm6]	T	C	3.124e^-4	0.743	UPSTREAM DMAP1 DOWNSTREAM CG11110 INTRON CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	17647635	2R_17647635_INS [dm3] 2R_21760130_INS [dm6]	C	CC	3.134e^-4	0.743	INTERGENIC
2R	15932717	2R_15932717_SNP [dm3] 2R_20045212_SNP [dm6]	A	C	3.134e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22447968	3R_22447968_SNP [dm3] 3R_26622246_SNP [dm6]	G	A	3.143e^-4	0.743	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
2L	830762	2L_830762_SNP [dm3] 2L_830762_SNP [dm6]	C	G	3.149e^-4	0.743	SYNONYMOUS_CODING dock	TF binding site mE1_TFBS_cad
2L	8994080	2L_8994080_SNP [dm3] 2L_8994080_SNP [dm6]	T	C	3.150e^-4	0.743	UTR_3_PRIME alien UPSTREAM CG17906 DOWNSTREAM CG9555 & 1 other
2L	8590411	2L_8590411_SNP [dm3] 2L_8590411_SNP [dm6]	A	T	3.153e^-4	0.743	INTRON Sema-1a EXON CR43855
3R	27267286	3R_27267286_SNP [dm3] 3R_31441564_SNP [dm6]	G	A	3.156e^-4	0.743	INTRON Gprk2
2R	19108209	2R_19108209_SNP [dm3] 2R_23220686_SNP [dm6]	T	G	3.164e^-4	0.743	INTERGENIC
2L	14462237	2L_14462237_SNP [dm3] 2L_14462237_SNP [dm6]	C	T	3.165e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	7778845	2L_7778845_SNP [dm3] 2L_7778845_SNP [dm6]	C	T	3.165e^-4	0.743	UPSTREAM CG7179 INTERGENIC
2L	3831941	2L_3831941_SNP [dm3] 2L_3831941_SNP [dm6]	C	T	3.169e^-4	0.743	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE
3R	7755347	3R_7755347_SNP [dm3] 3R_11929625_SNP [dm6]	A	G	3.178e^-4	0.743	INTRON Cad87A
X	5849022	X_5849022_SNP [dm3] X_5954989_SNP [dm6]	T	C	3.179e^-4	0.743	UPSTREAM CG6067 DOWNSTREAM CG6048 INTERGENIC
2R	1326148	2R_1326148_SNP [dm3] 2R_5438643_SNP [dm6]	T	C	3.179e^-4	0.743	INTRON laccase2
2L	10629465	2L_10629465_SNP [dm3] 2L_10629465_SNP [dm6]	A	C	3.187e^-4	0.743	UTR_3_PRIME CG7329	TF binding site mE1_TFBS_HSA
2R	12212863	2R_12212863_SNP [dm3] 2R_16325358_SNP [dm6]	C	T	3.187e^-4	0.743	UTR_3_PRIME Vha44 DOWNSTREAM CG4282 & 1 other
2L	7779016	2L_7779016_SNP [dm3] 2L_7779016_SNP [dm6]	T	A	3.189e^-4	0.743	UPSTREAM CG7179 INTERGENIC
2R	12640384	2R_12640384_SNP [dm3] 2R_16752879_SNP [dm6]	C	T	3.193e^-4	0.743	UTR_3_PRIME unc-104
X	5204026	X_5204026_SNP [dm3] X_5309993_SNP [dm6]	A	T	3.194e^-4	0.743	DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl
3L	12269423	3L_12269423_SNP [dm3] 3L_12276323_SNP [dm6]	T	G	3.210e^-4	0.743	INTRON CG4300	TF binding site BDTNP1_TFBS_dl
3R	22447383	3R_22447383_SNP [dm3] 3R_26621661_SNP [dm6]	A	T	3.211e^-4	0.743	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
3L	18806192	3L_18806192_SNP [dm3] 3L_18813092_SNP [dm6]	T	C	3.213e^-4	0.743	INTRON CG14073
2R	15270700	2R_15270700_SNP [dm3] 2R_19383195_SNP [dm6]	A	T	3.214e^-4	0.743	SYNONYMOUS_CODING CG10073
3L	7064228	3L_7064228_SNP [dm3] 3L_7071128_SNP [dm6]	G	A	3.219e^-4	0.743	INTRON CG8641
2R	9795739	2R_9795739_SNP [dm3] 2R_13908234_SNP [dm6]	G	A	3.225e^-4	0.743	START_GAINED shot UTR_5_PRIME shot INTRON shot	TF binding site mE1_TFBS_cad
3R	14448357	3R_14448357_INS [dm3] 3R_18622635_INS [dm6]	T	TTTATTTATACCCCAATTAG...	3.228e^-4	0.743	INTRON qin	TF binding site mE1_TFBS_inv
3L	4005354	3L_4005354_SNP [dm3] 3L_4005354_SNP [dm6]	T	C	3.229e^-4	0.743	UTR_3_PRIME CG14985	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1196923	2L_1196923_SNP [dm3] 2L_1196923_SNP [dm6]	C	T	3.230e^-4	0.743	DOWNSTREAM CG5001 INTERGENIC
3L	11734613	3L_11734613_SNP [dm3] 3L_11741513_SNP [dm6]	C	A	3.246e^-4	0.743	INTRON CG6024	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12088792	2R_12088792_SNP [dm3] 2R_16201287_SNP [dm6]	A	G	3.247e^-4	0.743	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9895652	3R_9895652_SNP [dm3] 3R_14069930_SNP [dm6]	G	A	3.248e^-4	0.743	INTRON foxo
2L	12588729	2L_12588729_SNP [dm3] 2L_12588729_SNP [dm6]	A	T	3.251e^-4	0.743	INTRON nub	TF binding site mE1_TFBS_cad
2L	11925524	2L_11925524_SNP [dm3] 2L_11925524_SNP [dm6]	C	T	3.253e^-4	0.743	INTRON Pde1c
2L	5685042	2L_5685042_SNP [dm3] 2L_5685042_SNP [dm6]	C	A	3.256e^-4	0.743	INTERGENIC
3L	16008375	3L_16008375_SNP [dm3] 3L_16015275_SNP [dm6]	G	A	3.262e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	9399199	2L_9399199_SNP [dm3] 2L_9399199_SNP [dm6]	T	G	3.263e^-4	0.743	INTRON Shawl
3R	2749861	3R_2749861_SNP [dm3] 3R_6924139_SNP [dm6]	T	A	3.268e^-4	0.743	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16401724	3R_16401724_DEL [dm3] 3R_20576002_DEL [dm6]	ATTTTTAAATCAAAGTTTAA...	A	3.269e^-4	0.743	DOWNSTREAM snoRNA:Psi18S-301 INTRON TFAM	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	19085680	3L_19085680_SNP [dm3] 3L_19092580_SNP [dm6]	G	T	3.287e^-4	0.743	UPSTREAM MESR6 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13236936	2L_13236936_SNP [dm3] 2L_13236936_SNP [dm6]	G	T	3.301e^-4	0.743	INTRON CG5867
2R	19082458	2R_19082458_SNP [dm3] 2R_23194935_SNP [dm6]	C	T	3.304e^-4	0.743	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16297099	X_16297099_SNP [dm3] X_16403066_SNP [dm6]	G	A	3.305e^-4	0.743	INTRON CG9981	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16443787	2R_16443787_SNP [dm3] 2R_20556282_SNP [dm6]	C	T	3.306e^-4	0.743	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18974739	2R_18974739_DEL [dm3] 2R_23087216_DEL [dm6]	AA	A	3.310e^-4	0.743	UTR_5_PRIME CG13538 UPSTREAM CG9877
2L	11170134	2L_11170134_SNP [dm3] 2L_11170134_SNP [dm6]	T	C	3.312e^-4	0.743	INTRON Ca-beta
X	6119279	X_6119279_DEL [dm3] X_6225246_DEL [dm6]	ATAAAATTATATTACA...	A	3.320e^-4	0.743	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4223031	2L_4223031_SNP [dm3] 2L_4223031_SNP [dm6]	A	G	3.323e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	11924185	X_11924185_SNP [dm3] X_12030152_SNP [dm6]	G	T	3.323e^-4	0.743	SYNONYMOUS_CODING Cyp311a1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	18372679	2L_18372679_SNP [dm3] 2L_18372679_SNP [dm6]	G	A	3.324e^-4	0.743	INTRON Fas3
2L	11301952	2L_11301952_SNP [dm3] 2L_11301952_SNP [dm6]	A	T	3.326e^-4	0.743	INTERGENIC
X	11686995	X_11686995_SNP [dm3] X_11792962_SNP [dm6]	T	G	3.332e^-4	0.743	START_GAINED CkIIbeta UTR_5_PRIME CkIIbeta DOWNSTREAM Karl INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3801606	3L_3801606_INS [dm3] 3L_3801606_INS [dm6]	T	TAA	3.342e^-4	0.743	UPSTREAM CG32264 INTRON CG32264
X	14088535	X_14088535_SNP [dm3] X_14194502_SNP [dm6]	T	C	3.350e^-4	0.743	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
X	3374834	X_3374834_SNP [dm3] X_3480801_SNP [dm6]	A	T	3.352e^-4	0.743	INTRON CR44999 & 1 other
2R	11385223	2R_11385223_DEL [dm3] 2R_15497718_DEL [dm6]	ATAC	T	3.353e^-4	0.743	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	11385228	2R_11385228_SNP [dm3] 2R_15497723_SNP [dm6]	T	G	3.353e^-4	0.743	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_Trl
X	10154324	X_10154324_SNP [dm3] X_10260291_SNP [dm6]	G	T	3.361e^-4	0.743	INTRON CR43959 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	1819486	2R_1819486_SNP [dm3] 2R_5931981_SNP [dm6]	T	C	3.363e^-4	0.743	DOWNSTREAM CG43366 INTERGENIC	transposable element FlyBase
2R	12073843	2R_12073843_SNP [dm3] 2R_16186338_SNP [dm6]	G	T	3.367e^-4	0.743	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9665051	3R_9665051_SNP [dm3] 3R_13839329_SNP [dm6]	G	T	3.368e^-4	0.743	SYNONYMOUS_CODING CG31495	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	1616957	2R_1616957_SNP [dm3] 2R_5729452_SNP [dm6]	A	T	3.370e^-4	0.743	INTERGENIC
2L	3742687	2L_3742687_SNP [dm3] 2L_3742687_SNP [dm6]	G	C	3.374e^-4	0.743	INTRON CG10019
2L	18328692	2L_18328692_SNP [dm3] 2L_18328692_SNP [dm6]	T	G	3.381e^-4	0.743	INTRON Fas3
2R	3343930	2R_3343930_SNP [dm3] 2R_7456425_SNP [dm6]	G	C	3.385e^-4	0.743	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10369722	3L_10369722_SNP [dm3] 3L_10376622_SNP [dm6]	T	C	3.387e^-4	0.743	INTERGENIC
3R	9895658	3R_9895658_SNP [dm3] 3R_14069936_SNP [dm6]	C	T	3.395e^-4	0.743	INTRON foxo
X	10751490	X_10751490_SNP [dm3] X_10857457_SNP [dm6]	A	G	3.400e^-4	0.743	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19921891	2R_19921891_SNP [dm3] 2R_24034368_SNP [dm6]	G	T	3.400e^-4	0.743	UTR_5_PRIME MAN1 UPSTREAM Chi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	5500006	2L_5500006_INS [dm3] 2L_5500006_INS [dm6]	T	TACAGAT	3.401e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14168976	2R_14168976_SNP [dm3] 2R_18281471_SNP [dm6]	T	A	3.401e^-4	0.743	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11373292	2R_11373292_SNP [dm3] 2R_15485787_SNP [dm6]	A	C	3.403e^-4	0.743	DOWNSTREAM CG12964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15978605	2R_15978605_SNP [dm3] 2R_20091100_SNP [dm6]	A	G	3.404e^-4	0.743	EXON CR44633	TF binding site mE1_TFBS_cad
2L	17778723	2L_17778723_INS [dm3] 2L_17778723_INS [dm6]	A	ATTAATAATTATAATTATAT...	3.405e^-4	0.743	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
2R	15155122	2R_15155122_SNP [dm3] 2R_19267617_SNP [dm6]	A	G	3.406e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	8779602	X_8779602_SNP [dm3] X_8885569_SNP [dm6]	G	C	3.407e^-4	0.743	INTRON Moe
3L	7748932	3L_7748932_SNP [dm3] 3L_7755832_SNP [dm6]	T	G	3.412e^-4	0.743	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
3R	18469578	3R_18469578_SNP [dm3] 3R_22643856_SNP [dm6]	A	G	3.415e^-4	0.743	INTRON CG45058
3L	12071512	3L_12071512_INS [dm3] 3L_12078412_INS [dm6]	A	ATATGGA	3.416e^-4	0.743	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14453855	2L_14453855_SNP [dm3] 2L_14453855_SNP [dm6]	A	T	3.419e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7779060	2L_7779060_SNP [dm3] 2L_7779060_SNP [dm6]	A	T	3.428e^-4	0.743	INTERGENIC
X	13331933	X_13331933_SNP [dm3] X_13437900_SNP [dm6]	A	G	3.434e^-4	0.743	INTERGENIC
2L	7453068	2L_7453068_SNP [dm3] 2L_7453068_SNP [dm6]	G	A	3.436e^-4	0.743	SYNONYMOUS_CODING Gr28a	TF binding site mE1_TFBS_HSA
3R	17246901	3R_17246901_SNP [dm3] 3R_21421179_SNP [dm6]	C	T	3.437e^-4	0.743	INTRON lbl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14446308	3R_14446308_INS [dm3] 3R_18620586_INS [dm6]	A	AA	3.441e^-4	0.743	UPSTREAM CG14304 INTRON qin & 1 other
3L	11955401	3L_11955401_SNP [dm3] 3L_11962301_SNP [dm6]	C	A	3.445e^-4	0.743	NON_SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
3L	9136868	3L_9136868_SNP [dm3] 3L_9143768_SNP [dm6]	C	A	3.446e^-4	0.743	NON_SYNONYMOUS_CODING nwk UTR_3_PRIME nwk UPSTREAM mir-4940	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	18290499	2R_18290499_INS [dm3] 2R_22402994_INS [dm6]	G	ATGT	3.447e^-4	0.743	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5685015	2L_5685015_SNP [dm3] 2L_5685015_SNP [dm6]	A	G	3.452e^-4	0.743	INTERGENIC
3L	10693228	3L_10693228_SNP [dm3] 3L_10700128_SNP [dm6]	G	T	3.455e^-4	0.743	INTERGENIC
2L	13093869	2L_13093869_INS [dm3] 2L_13093869_INS [dm6]	T	TT	3.456e^-4	0.743	INTERGENIC
2L	4830844	2L_4830844_DEL [dm3] 2L_4830844_DEL [dm6]	TTG	T	3.459e^-4	0.743	UTR_3_PRIME Ir25a UPSTREAM mir-4912 & 1 other DOWNSTREAM Ir25a INTRAGENIC Ir25a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	4085728	2L_4085728_SNP [dm3] 2L_4085728_SNP [dm6]	G	T	3.469e^-4	0.743	UPSTREAM snoRNA:Me28S-C437 INTRON ed
2L	9200040	2L_9200040_DEL [dm3] 2L_9200040_DEL [dm6]	CA	G	3.476e^-4	0.743	INTRON tai
2R	14795609	2R_14795609_SNP [dm3] 2R_18908104_SNP [dm6]	C	A	3.479e^-4	0.743	DOWNSTREAM Vha100-3 INTRON sano
2R	16102012	2R_16102012_SNP [dm3] 2R_20214507_SNP [dm6]	G	A	3.480e^-4	0.743	INTERGENIC
3L	18840243	3L_18840243_SNP [dm3] 3L_18847143_SNP [dm6]	G	C	3.482e^-4	0.743	UPSTREAM Indy INTERGENIC
3L	10735446	3L_10735446_INS [dm3] 3L_10742346_INS [dm6]	A	AA	3.485e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_Trl
X	8084879	X_8084879_SNP [dm3] X_8190846_SNP [dm6]	C	G	3.493e^-4	0.743	INTRON sdt
3L	10813470	3L_10813470_SNP [dm3] 3L_10820370_SNP [dm6]	A	G	3.499e^-4	0.743	INTERGENIC
3R	22447533	3R_22447533_SNP [dm3] 3R_26621811_SNP [dm6]	T	C	3.502e^-4	0.743	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
3L	7803391	3L_7803391_SNP [dm3] 3L_7810291_SNP [dm6]	A	T	3.515e^-4	0.743	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18013576	2L_18013576_SNP [dm3] 2L_18013576_SNP [dm6]	A	G	3.520e^-4	0.743	INTRON rdo	regulatory region REDfly_CRMs
2L	5685037	2L_5685037_SNP [dm3] 2L_5685037_SNP [dm6]	C	A	3.520e^-4	0.743	INTERGENIC
2R	9660559	2R_9660559_SNP [dm3] 2R_13773054_SNP [dm6]	A	G	3.524e^-4	0.743	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
2R	18227913	2R_18227913_SNP [dm3] 2R_22340408_SNP [dm6]	T	G	3.524e^-4	0.743	INTRON Liprin-gamma
2L	12053266	2L_12053266_SNP [dm3] 2L_12053266_SNP [dm6]	T	A	3.526e^-4	0.743	INTRON JhI-21
3R	14345446	3R_14345446_SNP [dm3] 3R_18519724_SNP [dm6]	T	G	3.526e^-4	0.743	INTRON fru
3L	12011790	3L_12011790_SNP [dm3] 3L_12018690_SNP [dm6]	C	T	3.527e^-4	0.743	INTRON rols
3R	18125592	3R_18125592_DEL [dm3] 3R_22299870_DEL [dm6]	AG	A	3.528e^-4	0.743	INTRON CG7084
2L	5558708	2L_5558708_SNP [dm3] 2L_5558708_SNP [dm6]	T	A	3.540e^-4	0.744	UTR_3_PRIME GluRIIA UPSTREAM GluRIIB
2R	1379654	2R_1379654_SNP [dm3] 2R_5492149_SNP [dm6]	G	A	3.545e^-4	0.744	INTRON CG30440
2R	9679289	2R_9679289_SNP [dm3] 2R_13791784_SNP [dm6]	T	G	3.554e^-4	0.744	UPSTREAM CR43811 INTERGENIC
2L	13236908	2L_13236908_SNP [dm3] 2L_13236908_SNP [dm6]	T	C	3.557e^-4	0.744	INTRON CG5867
2L	18337276	2L_18337276_SNP [dm3] 2L_18337276_SNP [dm6]	C	G	3.557e^-4	0.744	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14830210	2L_14830210_SNP [dm3] 2L_14830210_SNP [dm6]	T	A	3.564e^-4	0.744	INTERGENIC
2R	20033310	2R_20033310_SNP [dm3] 2R_24145787_SNP [dm6]	C	T	3.570e^-4	0.744	INTRON Dat
2L	7850149	2L_7850149_DEL [dm3] 2L_7850149_DEL [dm6]	TAAAGAT	T	3.574e^-4	0.744	INTRON CG14535
3R	6606804	3R_6606804_SNP [dm3] 3R_10781082_SNP [dm6]	G	C	3.575e^-4	0.744	NON_SYNONYMOUS_CODING CG42633 DOWNSTREAM Desi
3R	24845292	3R_24845292_SNP [dm3] 3R_29019570_SNP [dm6]	A	C	3.576e^-4	0.744	INTRON wat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	13210268	3R_13210268_INS [dm3] 3R_17384546_INS [dm6]	T	TC	3.579e^-4	0.744	INTRON Brf & 1 other
3L	5630408	3L_5630408_SNP [dm3] 3L_5637308_SNP [dm6]	G	C	3.582e^-4	0.744	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl
3R	25604978	3R_25604978_SNP [dm3] 3R_29779256_SNP [dm6]	T	G	3.584e^-4	0.744	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
X	5304448	X_5304448_SNP [dm3] X_5410415_SNP [dm6]	T	C	3.606e^-4	0.748	INTRON NAAT1
3L	10865777	3L_10865777_SNP [dm3] 3L_10872677_SNP [dm6]	C	A	3.614e^-4	0.748	SYNONYMOUS_CODING tna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	8114438	2R_8114438_SNP [dm3] 2R_12226933_SNP [dm6]	T	C	3.615e^-4	0.748	UPSTREAM CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
2L	6387461	2L_6387461_SNP [dm3] 2L_6387461_SNP [dm6]	C	A	3.626e^-4	0.748	INTRON CG42368
3R	20063596	3R_20063596_SNP [dm3] 3R_24237874_SNP [dm6]	G	A	3.629e^-4	0.748	SYNONYMOUS_CODING mask DOWNSTREAM scaRNA:MeU2-G25	TF binding site mE1_TFBS_cad
2L	7508779	2L_7508779_SNP [dm3] 2L_7508779_SNP [dm6]	C	T	3.630e^-4	0.748	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	14394796	2R_14394796_SNP [dm3] 2R_18507291_SNP [dm6]	C	T	3.631e^-4	0.748	INTERGENIC
2R	9784290	2R_9784290_SNP [dm3] 2R_13896785_SNP [dm6]	C	T	3.643e^-4	0.748	INTRON shot	TF binding site mE1_TFBS_cnc
2R	11382328	2R_11382328_SNP [dm3] 2R_15494823_SNP [dm6]	G	A	3.653e^-4	0.748	INTRON CG12964
2R	18135629	2R_18135629_SNP [dm3] 2R_22248124_SNP [dm6]	C	T	3.656e^-4	0.748	INTRON dve	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	6388819	3L_6388819_DEL [dm3] 3L_6395719_DEL [dm6]	TT	G	3.658e^-4	0.748	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11539488	3L_11539488_SNP [dm3] 3L_11546388_SNP [dm6]	C	T	3.665e^-4	0.748	INTRON Mob2
2R	11190586	2R_11190586_SNP [dm3] 2R_15303081_SNP [dm6]	T	G	3.665e^-4	0.748	INTRON Trpm
2L	17957474	2L_17957474_SNP [dm3] 2L_17957474_SNP [dm6]	G	T	3.669e^-4	0.748	INTERGENIC
3L	7154217	3L_7154217_SNP [dm3] 3L_7161117_SNP [dm6]	G	T	3.683e^-4	0.748	UTR_3_PRIME Dscam2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4897849	2L_4897849_SNP [dm3] 2L_4897849_SNP [dm6]	G	A	3.692e^-4	0.748	INTRON CG3036
2L	5980285	2L_5980285_SNP [dm3] 2L_5980285_SNP [dm6]	G	C	3.692e^-4	0.748	UTR_5_PRIME chic UPSTREAM chic INTRON chic	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9676653	2R_9676653_SNP [dm3] 2R_13789148_SNP [dm6]	G	A	3.694e^-4	0.748	INTERGENIC
2L	9911928	2L_9911928_SNP [dm3] 2L_9911928_SNP [dm6]	A	C	3.695e^-4	0.748	UPSTREAM Srp54 INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5849031	X_5849031_SNP [dm3] X_5954998_SNP [dm6]	A	G	3.696e^-4	0.748	UPSTREAM CG6067 DOWNSTREAM CG6048 INTERGENIC
3R	3079229	3R_3079229_SNP [dm3] 3R_7253507_SNP [dm6]	G	A	3.696e^-4	0.748	SYNONYMOUS_CODING Gld	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10364143	3L_10364143_SNP [dm3] 3L_10371043_SNP [dm6]	T	A	3.699e^-4	0.748	INTERGENIC
3R	10230428	3R_10230428_SNP [dm3] 3R_14404706_SNP [dm6]	G	C	3.700e^-4	0.748	INTRON cv-c
2L	9079134	2L_9079134_SNP [dm3] 2L_9079134_SNP [dm6]	C	T	3.715e^-4	0.748	INTERGENIC
2L	4897284	2L_4897284_SNP [dm3] 2L_4897284_SNP [dm6]	C	G	3.715e^-4	0.748	INTRON CG3036
2L	4897401	2L_4897401_SNP [dm3] 2L_4897401_SNP [dm6]	C	T	3.715e^-4	0.748	INTRON CG3036	TF binding site mE1_TFBS_sens
2R	15270653	2R_15270653_SNP [dm3] 2R_19383148_SNP [dm6]	G	A	3.719e^-4	0.748	NON_SYNONYMOUS_CODING CG10073
2L	14353375	2L_14353375_SNP [dm3] 2L_14353375_SNP [dm6]	C	T	3.719e^-4	0.748	SYNONYMOUS_CODING l_2_34Fd DOWNSTREAM CG43052	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19129622	2L_19129622_SNP [dm3] 2L_19129622_SNP [dm6]	T	A	3.721e^-4	0.748	UTR_3_PRIME Aats-asn DOWNSTREAM Aats-asn & 1 other	TF binding site mE1_TFBS_cad
3L	10357313	3L_10357313_SNP [dm3] 3L_10364213_SNP [dm6]	T	A	3.745e^-4	0.748	UPSTREAM CR44327 EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26869104	3R_26869104_SNP [dm3] 3R_31043382_SNP [dm6]	T	A	3.754e^-4	0.748	SPLICE_SITE_REGION CanA1 INTRON CanA1
2R	15139942	2R_15139942_DEL [dm3] 2R_19252437_DEL [dm6]	AT	A	3.757e^-4	0.748	UPSTREAM CG33454 DOWNSTREAM CG33453 INTERGENIC
X	13416532	X_13416532_SNP [dm3] X_13522499_SNP [dm6]	T	G	3.761e^-4	0.748	INTRON Neto	insulator Insulator_Class_II.mE01
2R	14208630	2R_14208630_SNP [dm3] 2R_18321125_SNP [dm6]	C	G	3.762e^-4	0.748	INTRON sbb
3L	7803371	3L_7803371_SNP [dm3] 3L_7810271_SNP [dm6]	T	A	3.765e^-4	0.748	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10362687	3L_10362687_SNP [dm3] 3L_10369587_SNP [dm6]	G	T	3.771e^-4	0.748	INTERGENIC
3R	19108772	3R_19108772_SNP [dm3] 3R_23283050_SNP [dm6]	G	C	3.772e^-4	0.748	SYNONYMOUS_CODING Cdc16 UPSTREAM CG6763
2L	1196933	2L_1196933_SNP [dm3] 2L_1196933_SNP [dm6]	A	G	3.774e^-4	0.748	DOWNSTREAM CG5001 INTERGENIC
2L	14028188	2L_14028188_SNP [dm3] 2L_14028188_SNP [dm6]	A	G	3.774e^-4	0.748	INTRON CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18379962	3R_18379962_SNP [dm3] 3R_22554240_SNP [dm6]	C	T	3.775e^-4	0.748	UPSTREAM bond INTRON bond
3L	2568084	3L_2568084_INS [dm3] 3L_2568084_INS [dm6]	T	TTTCT	3.779e^-4	0.748	INTRON msn
3R	26176045	3R_26176045_SNP [dm3] 3R_30350323_SNP [dm6]	C	T	3.782e^-4	0.748	INTRON hdc
3R	8431661	3R_8431661_SNP [dm3] 3R_12605939_SNP [dm6]	A	T	3.784e^-4	0.748	INTERGENIC
3R	18125629	3R_18125629_SNP [dm3] 3R_22299907_SNP [dm6]	A	T	3.784e^-4	0.748	INTRON CG7084
3L	10413521	3L_10413521_SNP [dm3] 3L_10420421_SNP [dm6]	A	T	3.786e^-4	0.748	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10572922	2L_10572922_SNP [dm3] 2L_10572922_SNP [dm6]	T	C	3.789e^-4	0.748	INTRON Trim9
2L	9285102	2L_9285102_DEL [dm3] 2L_9285102_DEL [dm6]	TT	T	3.790e^-4	0.748	INTRON Ggamma30A
X	10623104	X_10623104_SNP [dm3] X_10729071_SNP [dm6]	A	G	3.801e^-4	0.749	INTRON CG32676	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	2695570	3L_2695570_SNP [dm3] 3L_2695570_SNP [dm6]	T	A	3.804e^-4	0.749	INTRON Fife
2L	19340705	2L_19340705_SNP [dm3] 2L_19340705_SNP [dm6]	G	A	3.804e^-4	0.749	SYNONYMOUS_CODING dnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
3R	13210275	3R_13210275_SNP [dm3] 3R_17384553_SNP [dm6]	T	C	3.813e^-4	0.749	INTRON Brf & 1 other
2L	1666075	2L_1666075_SNP [dm3] 2L_1666075_SNP [dm6]	C	G	3.818e^-4	0.749	INTRON chinmo
2R	10338433	2R_10338433_SNP [dm3] 2R_14450928_SNP [dm6]	C	G	3.822e^-4	0.749	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	7779197	2L_7779197_SNP [dm3] 2L_7779197_SNP [dm6]	A	G	3.823e^-4	0.749	UPSTREAM Uro INTERGENIC
3L	10506414	3L_10506414_SNP [dm3] 3L_10513314_SNP [dm6]	G	A	3.827e^-4	0.749	INTRON A2bp1
3R	13283483	3R_13283483_SNP [dm3] 3R_17457761_SNP [dm6]	C	T	3.843e^-4	0.749	UPSTREAM CG14330 INTERGENIC
3R	18636407	3R_18636407_SNP [dm3] 3R_22810685_SNP [dm6]	T	C	3.845e^-4	0.749	INTERGENIC
3R	26021423	3R_26021423_SNP [dm3] 3R_30195701_SNP [dm6]	C	T	3.846e^-4	0.749	DOWNSTREAM CG9743 INTRON CG15531
2L	4896606	2L_4896606_SNP [dm3] 2L_4896606_SNP [dm6]	A	T	3.852e^-4	0.749	INTRON CG3036
2L	12588444	2L_12588444_SNP [dm3] 2L_12588444_SNP [dm6]	T	A	3.861e^-4	0.749	INTRON nub
3R	18125601	3R_18125601_SNP [dm3] 3R_22299879_SNP [dm6]	T	A	3.861e^-4	0.749	INTRON CG7084
X	8100507	X_8100507_SNP [dm3] X_8206474_SNP [dm6]	C	A	3.876e^-4	0.749	INTRON sdt
2R	2795892	2R_2795892_SNP [dm3] 2R_6908387_SNP [dm6]	T	A	3.879e^-4	0.749	INTRON CG30158	TF binding site mE1_TFBS_chinmo
3R	7511668	3R_7511668_SNP [dm3] 3R_11685946_SNP [dm6]	G	T	3.888e^-4	0.749	NON_SYNONYMOUS_CODING CG6834	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19169514	X_19169514_SNP [dm3] X_19275481_SNP [dm6]	A	G	3.896e^-4	0.749	SYNONYMOUS_CODING CG32536 UTR_5_PRIME CG32537 UPSTREAM CG32537	TF binding site mE1_TFBS_cad
3R	3827492	3R_3827492_DEL [dm3] 3R_8001770_DEL [dm6]	CTG	C	3.899e^-4	0.749	UTR_5_PRIME CG2698 UPSTREAM Kmn2 DOWNSTREAM CG14463	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	10627570	X_10627570_SNP [dm3] X_10733537_SNP [dm6]	G	A	3.899e^-4	0.749	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7986378	2L_7986378_SNP [dm3] 2L_7986378_SNP [dm6]	C	A	3.902e^-4	0.749	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
X	20827329	X_20827329_INS [dm3] X_20956302_INS [dm6]	G	GG	3.906e^-4	0.749	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14052304	3L_14052304_SNP [dm3] 3L_14059204_SNP [dm6]	C	A	3.908e^-4	0.749	INTRON CG32138
3L	10767055	3L_10767055_SNP [dm3] 3L_10773955_SNP [dm6]	A	G	3.912e^-4	0.749	DOWNSTREAM CG43245 INTERGENIC
2L	7281505	2L_7281505_SNP [dm3] 2L_7281505_SNP [dm6]	T	A	3.933e^-4	0.749	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7281591	2L_7281591_SNP [dm3] 2L_7281591_SNP [dm6]	T	A	3.933e^-4	0.749	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7281509	2L_7281509_SNP [dm3] 2L_7281509_SNP [dm6]	A	T	3.939e^-4	0.749	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12011773	3L_12011773_SNP [dm3] 3L_12018673_SNP [dm6]	G	A	3.942e^-4	0.749	INTRON rols
X	4246410	X_4246410_SNP [dm3] X_4352377_SNP [dm6]	C	T	3.947e^-4	0.749	INTRON norpA
2L	13950030	2L_13950030_SNP [dm3] 2L_13950030_SNP [dm6]	A	G	3.948e^-4	0.749	INTRON Ance-3
2L	9745583	2L_9745583_SNP [dm3] 2L_9745583_SNP [dm6]	A	G	3.954e^-4	0.749	INTRON Nckx30C
3L	10039648	3L_10039648_SNP [dm3] 3L_10046548_SNP [dm6]	T	A	3.954e^-4	0.749	INTRON dpr6
2R	1362632	2R_1362632_SNP [dm3] 2R_5475127_SNP [dm6]	G	T	3.955e^-4	0.749	INTRON CG30440
2R	12072897	2R_12072897_SNP [dm3] 2R_16185392_SNP [dm6]	C	T	3.959e^-4	0.749	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	9674954	2R_9674954_SNP [dm3] 2R_13787449_SNP [dm6]	A	T	3.983e^-4	0.749	UTR_3_PRIME Cpr50Ca
3R	3015639	3R_3015639_DEL [dm3] 3R_7189917_DEL [dm6]	CAAAT	C	3.995e^-4	0.749	INTRON lap
3L	1194748	3L_1194748_SNP [dm3] 3L_1194748_SNP [dm6]	T	A	3.998e^-4	0.749	UTR_3_PRIME LysX
3L	19514345	3L_19514345_SNP [dm3] 3L_19521245_SNP [dm6]	T	G	4.003e^-4	0.749	UTR_5_PRIME Cpr76Bc UPSTREAM Cpr76Bc DOWNSTREAM Cpr76Bb
2L	9285090	2L_9285090_DEL [dm3] 2L_9285090_DEL [dm6]	TAAACA	T	4.004e^-4	0.749	INTRON Ggamma30A
2R	13735725	2R_13735725_SNP [dm3] 2R_17848220_SNP [dm6]	C	T	4.006e^-4	0.749	UTR_3_PRIME olf186-M INTRON olf186-F
3L	6230340	3L_6230340_SNP [dm3] 3L_6237240_SNP [dm6]	T	C	4.010e^-4	0.749	SYNONYMOUS_CODING CG10226	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11804857	2R_11804857_SNP [dm3] 2R_15917352_SNP [dm6]	A	T	4.012e^-4	0.749	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
3L	15640687	3L_15640687_SNP [dm3] 3L_15647587_SNP [dm6]	T	G	4.013e^-4	0.749	NON_SYNONYMOUS_CODING comm3 UPSTREAM CG43083	TF binding site mE1_TFBS_sens
3R	11596591	3R_11596591_SNP [dm3] 3R_15770869_SNP [dm6]	A	G	4.018e^-4	0.749	INTERGENIC
3L	6242994	3L_6242994_SNP [dm3] 3L_6249894_SNP [dm6]	A	T	4.023e^-4	0.749	INTRON Best2
2L	9196398	2L_9196398_SNP [dm3] 2L_9196398_SNP [dm6]	T	A	4.023e^-4	0.749	INTRON tai
2L	5070806	2L_5070806_SNP [dm3] 2L_5070806_SNP [dm6]	T	G	4.024e^-4	0.749	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2R	17291668	2R_17291668_SNP [dm3] 2R_21404163_SNP [dm6]	C	G	4.024e^-4	0.749	INTRON Sdc
2L	5980307	2L_5980307_SNP [dm3] 2L_5980307_SNP [dm6]	G	C	4.030e^-4	0.749	START_GAINED chic UTR_5_PRIME chic UPSTREAM chic INTRON chic	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16443789	2R_16443789_SNP [dm3] 2R_20556284_SNP [dm6]	A	G	4.033e^-4	0.749	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi

By genomic position
Variant impact
Gene name

mn_Week3_Fecundity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results