DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.358e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1936 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9676496	2R_9676496_SNP [dm3] 2R_13788991_SNP [dm6]	T	C	1.242e^-6	0.679	INTERGENIC
2R	5389944	2R_5389944_SNP [dm3] 2R_9502439_SNP [dm6]	C	A	1.249e^-6	0.679	NON_SYNONYMOUS_CODING Wnt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1354357	2R_1354357_SNP [dm3] 2R_5466852_SNP [dm6]	G	T	1.564e^-6	0.679	INTERGENIC	transposable element FlyBase
3L	10836895	3L_10836895_SNP [dm3] 3L_10843795_SNP [dm6]	A	G	1.636e^-6	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	14676098	2R_14676098_SNP [dm3] 2R_18788593_SNP [dm6]	C	T	1.860e^-6	0.679	INTRON CG15080
2R	7220740	2R_7220740_SNP [dm3] 2R_11333235_SNP [dm6]	C	T	3.474e^-6	0.679	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16925265	X_16925265_SNP [dm3] X_17031232_SNP [dm6]	G	C	3.590e^-6	0.679	INTRON CG45002
3L	10836651	3L_10836651_SNP [dm3] 3L_10843551_SNP [dm6]	C	T	3.713e^-6	0.679	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20517634	3R_20517634_SNP [dm3] 3R_24691912_SNP [dm6]	C	T	4.045e^-6	0.679	SYNONYMOUS_CODING slo
2R	9679611	2R_9679611_DEL [dm3] 2R_13792106_DEL [dm6]	CC	C	4.289e^-6	0.679	EXON CR43811
2R	1354359	2R_1354359_SNP [dm3] 2R_5466854_SNP [dm6]	C	A	4.542e^-6	0.679	INTERGENIC	transposable element FlyBase
2R	12145282	2R_12145282_SNP [dm3] 2R_16257777_SNP [dm6]	C	A	5.504e^-6	0.679	INTRON CngA
3R	16300782	3R_16300782_SNP [dm3] 3R_20475060_SNP [dm6]	T	C	5.526e^-6	0.679	INTRON Gfrl
2R	9676653	2R_9676653_SNP [dm3] 2R_13789148_SNP [dm6]	G	A	5.639e^-6	0.679	INTERGENIC
2R	10011581	2R_10011581_SNP [dm3] 2R_14124076_SNP [dm6]	C	T	5.874e^-6	0.679	INTRON Prosap
2R	7220722	2R_7220722_SNP [dm3] 2R_11333217_SNP [dm6]	G	A	6.065e^-6	0.679	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10011586	2R_10011586_SNP [dm3] 2R_14124081_SNP [dm6]	A	T	6.557e^-6	0.679	INTRON Prosap
X	16925264	X_16925264_SNP [dm3] X_17031231_SNP [dm6]	G	A	6.607e^-6	0.679	INTRON CG45002
2R	9799311	2R_9799311_SNP [dm3] 2R_13911806_SNP [dm6]	C	T	7.923e^-6	0.679	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9799329	2R_9799329_INS [dm3] 2R_13911824_INS [dm6]	A	TGATGGTG	7.967e^-6	0.679	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9799332	2R_9799332_SNP [dm3] 2R_13911827_SNP [dm6]	A	G	7.967e^-6	0.679	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9799335	2R_9799335_SNP [dm3] 2R_13911830_SNP [dm6]	C	T	7.967e^-6	0.679	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9675820	2R_9675820_SNP [dm3] 2R_13788315_SNP [dm6]	T	A	8.407e^-6	0.686	DOWNSTREAM Cpr50Ca INTERGENIC
2L	8423456	2L_8423456_DEL [dm3] 2L_8423456_DEL [dm6]	TGCT	T	8.866e^-6	0.693	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	13384648	2R_13384648_SNP [dm3] 2R_17497143_SNP [dm6]	G	A	9.599e^-6	0.72	INTERGENIC
3L	12494166	3L_12494166_SNP [dm3] 3L_12501066_SNP [dm6]	C	T	1.045e^-5	0.731	UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
2R	7220794	2R_7220794_SNP [dm3] 2R_11333289_SNP [dm6]	T	C	1.068e^-5	0.731	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12145295	2R_12145295_DEL [dm3] 2R_16257790_DEL [dm6]	ATTGA	A	1.091e^-5	0.731	INTRON CngA
2L	20423664	2L_20423664_SNP [dm3] 2L_20423664_SNP [dm6]	G	A	1.171e^-5	0.744	DOWNSTREAM Arpc2 INTRON CG15130
2R	12076005	2R_12076005_SNP [dm3] 2R_16188500_SNP [dm6]	C	T	1.256e^-5	0.744	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10836872	3L_10836872_SNP [dm3] 3L_10843772_SNP [dm6]	G	T	1.303e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	5014255	X_5014255_DEL [dm3] X_5120222_DEL [dm6]	ACCA	A	1.306e^-5	0.744	INTRON rg & 1 other
3L	2545668	3L_2545668_DEL [dm3] 3L_2545668_DEL [dm6]	TAAATTAAAGGCTTTGT...	T	1.308e^-5	0.744	INTRON Spn
2R	1352419	2R_1352419_SNP [dm3] 2R_5464914_SNP [dm6]	G	T	1.477e^-5	0.794	INTERGENIC	transposable element FlyBase
X	6732826	X_6732826_SNP [dm3] X_6838793_SNP [dm6]	T	A	1.482e^-5	0.794	UTR_3_PRIME CG14435 DOWNSTREAM nonC & 1 other
3R	13660339	3R_13660339_SNP [dm3] 3R_17834617_SNP [dm6]	A	G	1.578e^-5	0.801	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	7220854	2R_7220854_SNP [dm3] 2R_11333349_SNP [dm6]	T	C	1.623e^-5	0.801	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19207896	3R_19207896_SNP [dm3] 3R_23382174_SNP [dm6]	T	A	1.632e^-5	0.801	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6487290	2L_6487290_SNP [dm3] 2L_6487290_SNP [dm6]	A	G	1.667e^-5	0.801	UTR_3_PRIME DLP DOWNSTREAM KFase & 1 other
2R	12100255	2R_12100255_SNP [dm3] 2R_16212750_SNP [dm6]	T	C	1.732e^-5	0.802	INTRON mrj
2R	12073056	2R_12073056_SNP [dm3] 2R_16185551_SNP [dm6]	A	G	1.781e^-5	0.802	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	22569694	2L_22569694_SNP [dm3] 2L_22676962_SNP [dm6]	A	G	1.874e^-5	0.802	INTRON CG40006
2L	20415082	2L_20415082_SNP [dm3] 2L_20415082_SNP [dm6]	T	A	1.885e^-5	0.802	UPSTREAM CG10947 DOWNSTREAM CG10949 INTERGENIC
2R	12074021	2R_12074021_SNP [dm3] 2R_16186516_SNP [dm6]	C	A	2.023e^-5	0.802	UPSTREAM clu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Ubx
2R	12145306	2R_12145306_SNP [dm3] 2R_16257801_SNP [dm6]	A	G	2.079e^-5	0.802	INTRON CngA
X	9006441	X_9006441_INS [dm3] X_9112408_INS [dm6]	C	CTT	2.122e^-5	0.802	INTRON AP-1gamma
3L	5212948	3L_5212948_SNP [dm3] 3L_5219848_SNP [dm6]	T	C	2.125e^-5	0.802	INTRON shep
3R	8151847	3R_8151847_SNP [dm3] 3R_12326125_SNP [dm6]	C	T	2.172e^-5	0.802	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	5718115	2L_5718115_SNP [dm3] 2L_5718115_SNP [dm6]	A	C	2.228e^-5	0.802	DOWNSTREAM CG11149 & 1 other INTERGENIC
X	16947237	X_16947237_SNP [dm3] X_17053204_SNP [dm6]	C	G	2.229e^-5	0.802	INTRON CG45002
2L	10430998	2L_10430998_SNP [dm3] 2L_10430998_SNP [dm6]	T	A	2.253e^-5	0.802	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9675960	2R_9675960_SNP [dm3] 2R_13788455_SNP [dm6]	G	A	2.259e^-5	0.802	DOWNSTREAM Cpr50Ca INTERGENIC
3R	9702120	3R_9702120_SNP [dm3] 3R_13876398_SNP [dm6]	G	A	2.273e^-5	0.802	INTRON E5	TF binding site BDTNP1_TFBS_dl
3R	8151852	3R_8151852_SNP [dm3] 3R_12326130_SNP [dm6]	C	G	2.308e^-5	0.802	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7702077	2L_7702077_SNP [dm3] 2L_7702077_SNP [dm6]	A	G	2.367e^-5	0.807	UPSTREAM Tep2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10431178	2L_10431178_SNP [dm3] 2L_10431178_SNP [dm6]	A	T	2.446e^-5	0.809	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9702820	3R_9702820_SNP [dm3] 3R_13877098_SNP [dm6]	C	T	2.528e^-5	0.809	UTR_5_PRIME E5	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16947242	X_16947242_SNP [dm3] X_17053209_SNP [dm6]	A	G	2.534e^-5	0.809	INTRON CG45002
3L	18957937	3L_18957937_SNP [dm3] 3L_18964837_SNP [dm6]	A	C	2.717e^-5	0.809	INTERGENIC
3L	18957938	3L_18957938_SNP [dm3] 3L_18964838_SNP [dm6]	T	A	2.717e^-5	0.809	INTERGENIC
2R	19573478	2R_19573478_SNP [dm3] 2R_23685955_SNP [dm6]	C	T	2.782e^-5	0.809	UPSTREAM l_2_efl INTRON St3
3L	5216153	3L_5216153_SNP [dm3] 3L_5223053_SNP [dm6]	T	A	2.839e^-5	0.809	INTRON shep
2R	9798932	2R_9798932_SNP [dm3] 2R_13911427_SNP [dm6]	G	A	2.904e^-5	0.809	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9675391	2R_9675391_SNP [dm3] 2R_13787886_SNP [dm6]	G	A	2.914e^-5	0.809	DOWNSTREAM Cpr50Ca INTERGENIC
X	7547548	X_7547548_SNP [dm3] X_7653515_SNP [dm6]	C	T	2.925e^-5	0.809	INTRON ct
2R	9977790	2R_9977790_SNP [dm3] 2R_14090285_SNP [dm6]	T	A	3.007e^-5	0.809	UPSTREAM CG42287 & 1 other INTRON Prosap
X	16947256	X_16947256_SNP [dm3] X_17053223_SNP [dm6]	C	A	3.007e^-5	0.809	INTRON CG45002
3L	18957941	3L_18957941_SNP [dm3] 3L_18964841_SNP [dm6]	G	C	3.059e^-5	0.809	INTERGENIC
2R	14925367	2R_14925367_SNP [dm3] 2R_19037862_SNP [dm6]	A	G	3.126e^-5	0.809	INTERGENIC
X	16947190	X_16947190_SNP [dm3] X_17053157_SNP [dm6]	G	T	3.172e^-5	0.809	INTRON CG45002
2R	8620603	2R_8620603_SNP [dm3] 2R_12733098_SNP [dm6]	T	C	3.287e^-5	0.809	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6487218	2L_6487218_SNP [dm3] 2L_6487218_SNP [dm6]	A	G	3.324e^-5	0.809	UTR_3_PRIME DLP DOWNSTREAM KFase & 1 other
2R	6679800	2R_6679800_SNP [dm3] 2R_10792295_SNP [dm6]	T	G	3.460e^-5	0.809	INTRON CG33144 & 1 other
2L	19688097	2L_19688097_SNP [dm3] 2L_19688097_SNP [dm6]	T	A	3.463e^-5	0.809	INTRON Lar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2R	9680600	2R_9680600_SNP [dm3] 2R_13793095_SNP [dm6]	G	T	3.485e^-5	0.809	DOWNSTREAM CR43811 INTERGENIC
2R	9679289	2R_9679289_SNP [dm3] 2R_13791784_SNP [dm6]	T	G	3.517e^-5	0.809	UPSTREAM CR43811 INTERGENIC
2R	9675734	2R_9675734_SNP [dm3] 2R_13788229_SNP [dm6]	T	C	3.524e^-5	0.809	DOWNSTREAM Cpr50Ca INTERGENIC
3L	18957992	3L_18957992_SNP [dm3] 3L_18964892_SNP [dm6]	C	T	3.524e^-5	0.809	INTERGENIC
2R	14925188	2R_14925188_SNP [dm3] 2R_19037683_SNP [dm6]	A	G	3.555e^-5	0.809	INTERGENIC
2R	20191493	2R_20191493_SNP [dm3] 2R_24303970_SNP [dm6]	G	A	3.571e^-5	0.809	INTERGENIC	regulatory region REDfly_CRMs
2R	17163256	2R_17163256_SNP [dm3] 2R_21275751_SNP [dm6]	G	A	3.583e^-5	0.809	INTRON Rgk3
2R	16326263	2R_16326263_SNP [dm3] 2R_20438758_SNP [dm6]	G	A	3.609e^-5	0.809	INTRON CG12484
2R	9677964	2R_9677964_SNP [dm3] 2R_13790459_SNP [dm6]	A	T	3.628e^-5	0.809	INTERGENIC
X	16925193	X_16925193_SNP [dm3] X_17031160_SNP [dm6]	A	T	3.644e^-5	0.809	INTRON CG45002
3R	26490041	3R_26490041_SNP [dm3] 3R_30664319_SNP [dm6]	G	T	3.664e^-5	0.809	UPSTREAM CR45191 INTERGENIC
X	5014243	X_5014243_SNP [dm3] X_5120210_SNP [dm6]	G	C	3.720e^-5	0.811	INTRON rg & 1 other
2L	663580	2L_663580_SNP [dm3] 2L_663580_SNP [dm6]	G	C	3.814e^-5	0.813	INTRON ds
3R	8151848	3R_8151848_SNP [dm3] 3R_12326126_SNP [dm6]	T	G	3.876e^-5	0.813	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	10431186	2L_10431186_SNP [dm3] 2L_10431186_SNP [dm6]	A	G	3.921e^-5	0.813	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4242277	3L_4242277_SNP [dm3] 3L_4242277_SNP [dm6]	T	C	3.963e^-5	0.813	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	15295921	X_15295921_DEL [dm3] X_15401888_DEL [dm6]	AA	A	3.978e^-5	0.813	INTRON Cngl
2R	17002143	2R_17002143_SNP [dm3] 2R_21114638_SNP [dm6]	A	C	3.988e^-5	0.813	INTRON ktub
2R	9680269	2R_9680269_SNP [dm3] 2R_13792764_SNP [dm6]	T	A	4.128e^-5	0.82	DOWNSTREAM CR43811 INTERGENIC
3L	10836873	3L_10836873_SNP [dm3] 3L_10843773_SNP [dm6]	A	G	4.135e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	16925175	X_16925175_SNP [dm3] X_17031142_SNP [dm6]	A	G	4.154e^-5	0.82	INTRON CG45002
2R	12075919	2R_12075919_SNP [dm3] 2R_16188414_SNP [dm6]	A	G	4.200e^-5	0.82	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18958040	3L_18958040_SNP [dm3] 3L_18964940_SNP [dm6]	T	C	4.356e^-5	0.838	INTERGENIC
3L	18958049	3L_18958049_SNP [dm3] 3L_18964949_SNP [dm6]	A	G	4.381e^-5	0.838	INTERGENIC
3L	12494061	3L_12494061_SNP [dm3] 3L_12500961_SNP [dm6]	T	C	4.489e^-5	0.845	NON_SYNONYMOUS_CODING CG10638 UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
2R	18864961	2R_18864961_INS [dm3] 2R_22977438_INS [dm6]	T	TAT	4.557e^-5	0.845	INTERGENIC
2R	9677957	2R_9677957_SNP [dm3] 2R_13790452_SNP [dm6]	A	T	4.602e^-5	0.845	INTERGENIC
3L	2545690	3L_2545690_SNP [dm3] 3L_2545690_SNP [dm6]	G	A	4.607e^-5	0.845	INTRON Spn
3L	18957971	3L_18957971_SNP [dm3] 3L_18964871_SNP [dm6]	C	G	4.689e^-5	0.845	INTERGENIC
3R	9702871	3R_9702871_SNP [dm3] 3R_13877149_SNP [dm6]	T	C	4.697e^-5	0.845	UTR_5_PRIME E5	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6130934	2R_6130934_SNP [dm3] 2R_10243429_SNP [dm6]	G	A	4.730e^-5	0.845	SYNONYMOUS_CODING Hdc	TF binding site mE1_TFBS_cad
2L	7011957	2L_7011957_SNP [dm3] 2L_7011957_SNP [dm6]	A	C	4.793e^-5	0.848	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
2L	18814298	2L_18814298_SNP [dm3] 2L_18814298_SNP [dm6]	T	C	4.935e^-5	0.855	DOWNSTREAM CG17325 & 1 other INTERGENIC
2R	10033109	2R_10033109_SNP [dm3] 2R_14145604_SNP [dm6]	C	T	4.963e^-5	0.855	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	16443782	2R_16443782_SNP [dm3] 2R_20556277_SNP [dm6]	C	T	4.988e^-5	0.855	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9677994	2R_9677994_SNP [dm3] 2R_13790489_SNP [dm6]	T	A	5.043e^-5	0.855	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10767055	3L_10767055_SNP [dm3] 3L_10773955_SNP [dm6]	A	G	5.062e^-5	0.855	DOWNSTREAM CG43245 INTERGENIC
2R	12075996	2R_12075996_SNP [dm3] 2R_16188491_SNP [dm6]	C	T	5.228e^-5	0.876	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10368541	3R_10368541_SNP [dm3] 3R_14542819_SNP [dm6]	G	C	5.392e^-5	0.886	INTRON Pde6
2R	9677979	2R_9677979_SNP [dm3] 2R_13790474_SNP [dm6]	T	A	5.429e^-5	0.886	INTERGENIC
X	9006430	X_9006430_SNP [dm3] X_9112397_SNP [dm6]	G	A	5.502e^-5	0.886	INTRON AP-1gamma
3L	12605189	3L_12605189_SNP [dm3] 3L_12612089_SNP [dm6]	G	T	5.563e^-5	0.886	INTRON caup
3R	20807111	3R_20807111_SNP [dm3] 3R_24981389_SNP [dm6]	A	G	5.576e^-5	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	9677883	2R_9677883_SNP [dm3] 2R_13790378_SNP [dm6]	A	T	5.611e^-5	0.886	INTERGENIC
3R	26490513	3R_26490513_SNP [dm3] 3R_30664791_SNP [dm6]	C	A	5.624e^-5	0.886	EXON CR45191
2R	14925361	2R_14925361_INS [dm3] 2R_19037856_INS [dm6]	A	AA	5.742e^-5	0.89	INTERGENIC
3R	26652506	3R_26652506_SNP [dm3] 3R_30826784_SNP [dm6]	G	A	5.803e^-5	0.89	UTR_3_PRIME cindr DOWNSTREAM cindr
2L	20418995	2L_20418995_SNP [dm3] 2L_20418995_SNP [dm6]	C	A	5.831e^-5	0.89	UPSTREAM snoRNA:Psi18S-640b & 6 others DOWNSTREAM snoRNA:Psi18S-525a & 3 others INTRON Arpc2	TF binding site mE1_TFBS_zfh1
2R	9678025	2R_9678025_SNP [dm3] 2R_13790520_SNP [dm6]	T	A	5.961e^-5	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3R	11266015	3R_11266015_SNP [dm3] 3R_15440293_SNP [dm6]	A	T	5.964e^-5	0.89	INTRON Act88F	regulatory region REDfly_CRMs
2R	16317394	2R_16317394_SNP [dm3] 2R_20429889_SNP [dm6]	A	G	5.968e^-5	0.89	INTRON CG12484
2R	6130856	2R_6130856_SNP [dm3] 2R_10243351_SNP [dm6]	C	T	6.018e^-5	0.89	SYNONYMOUS_CODING Hdc	TF binding site mE1_TFBS_cad
2R	6689209	2R_6689209_SNP [dm3] 2R_10801704_SNP [dm6]	T	A	6.115e^-5	0.89	INTRON wde	TF binding site mE1_TFBS_cad
2L	5536847	2L_5536847_SNP [dm3] 2L_5536847_SNP [dm6]	A	G	6.162e^-5	0.89	UPSTREAM tomb DOWNSTREAM CG14015 & 1 other INTERGENIC
X	4799123	X_4799123_SNP [dm3] X_4905090_SNP [dm6]	A	T	6.188e^-5	0.89	SYNONYMOUS_CODING CG42594 UTR_3_PRIME CG42594	TF binding site mE1_TFBS_chinmo
3R	11920319	3R_11920319_INS [dm3] 3R_16094597_INS [dm6]	T	TG	6.204e^-5	0.89	UPSTREAM Mhcl INTRON Mhcl
2R	9764517	2R_9764517_SNP [dm3] 2R_13877012_SNP [dm6]	C	T	6.215e^-5	0.89	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12145321	2R_12145321_SNP [dm3] 2R_16257816_SNP [dm6]	T	A	6.269e^-5	0.891	INTRON CngA
2R	17929699	2R_17929699_SNP [dm3] 2R_22042194_SNP [dm6]	A	G	6.482e^-5	0.914	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	17055592	X_17055592_SNP [dm3] X_17161559_SNP [dm6]	C	T	6.594e^-5	0.923	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	18820270	2L_18820270_SNP [dm3] 2L_18820270_SNP [dm6]	T	C	6.787e^-5	0.926	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
2L	18814299	2L_18814299_SNP [dm3] 2L_18814299_SNP [dm6]	A	G	6.813e^-5	0.926	DOWNSTREAM CG17325 & 1 other INTERGENIC
X	16947214	X_16947214_SNP [dm3] X_17053181_SNP [dm6]	G	A	6.817e^-5	0.926	INTRON CG45002
2L	13058490	2L_13058490_SNP [dm3] 2L_13058490_SNP [dm6]	C	G	6.894e^-5	0.926	INTRON CG9932
3R	26490048	3R_26490048_SNP [dm3] 3R_30664326_SNP [dm6]	C	T	6.942e^-5	0.926	UPSTREAM CR45191 INTERGENIC
2R	9966984	2R_9966984_SNP [dm3] 2R_14079479_SNP [dm6]	T	C	7.031e^-5	0.926	INTRON Prosap
X	16611761	X_16611761_SNP [dm3] X_16717728_SNP [dm6]	C	T	7.038e^-5	0.926	INTRON CG34325
3L	10838588	3L_10838588_SNP [dm3] 3L_10845488_SNP [dm6]	G	A	7.074e^-5	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3243348	X_3243348_SNP [dm3] X_3349315_SNP [dm6]	C	T	7.082e^-5	0.926	UPSTREAM CR44886 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17647628	2R_17647628_SNP [dm3] 2R_21760123_SNP [dm6]	C	A	7.154e^-5	0.926	INTERGENIC
3L	4828686	3L_4828686_SNP [dm3] 3L_4828686_SNP [dm6]	G	T	7.160e^-5	0.926	NON_SYNONYMOUS_CODING Aats-leu DOWNSTREAM CG13708
X	17515032	X_17515032_SNP [dm3] X_17620999_SNP [dm6]	T	C	7.291e^-5	0.928	INTERGENIC
2L	20415841	2L_20415841_SNP [dm3] 2L_20415841_SNP [dm6]	G	A	7.357e^-5	0.928	SYNONYMOUS_CODING CG10949	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16946978	X_16946978_SNP [dm3] X_17052945_SNP [dm6]	G	A	7.384e^-5	0.928	INTRON CG45002
2R	6130922	2R_6130922_SNP [dm3] 2R_10243417_SNP [dm6]	T	C	7.400e^-5	0.928	SYNONYMOUS_CODING Hdc	TF binding site mE1_TFBS_cad
X	7908727	X_7908727_SNP [dm3] X_8014694_SNP [dm6]	A	C	7.424e^-5	0.928	INTRON Tbh
2R	10066676	2R_10066676_SNP [dm3] 2R_14179171_SNP [dm6]	G	T	7.608e^-5	0.945	SYNONYMOUS_CODING cg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16897538	3L_16897538_SNP [dm3] 3L_16904438_SNP [dm6]	G	A	7.681e^-5	0.946	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	5204026	X_5204026_SNP [dm3] X_5309993_SNP [dm6]	A	T	7.713e^-5	0.946	DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl
3L	21901406	3L_21901406_SNP [dm3] 3L_21908306_SNP [dm6]	A	G	7.872e^-5	0.948	INTRON mub
3R	21710535	3R_21710535_SNP [dm3] 3R_25884813_SNP [dm6]	A	C	7.891e^-5	0.948	INTRON SppL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12300567	2R_12300567_SNP [dm3] 2R_16413062_SNP [dm6]	A	G	7.907e^-5	0.948	INTRON Sema-2b
2R	15540432	2R_15540432_SNP [dm3] 2R_19652927_SNP [dm6]	C	T	8.012e^-5	0.948	UPSTREAM CR44213 DOWNSTREAM Ir56e EXON CR44212
X	16925189	X_16925189_SNP [dm3] X_17031156_SNP [dm6]	C	T	8.014e^-5	0.948	INTRON CG45002
X	16947103	X_16947103_DEL [dm3] X_17053070_DEL [dm6]	TTAGTTTTAAATCA...	T	8.039e^-5	0.948	INTRON CG45002
2R	11943683	2R_11943683_SNP [dm3] 2R_16056178_SNP [dm6]	C	T	8.098e^-5	0.949	INTRON CG8405
2L	5718112	2L_5718112_SNP [dm3] 2L_5718112_SNP [dm6]	T	A	8.486e^-5	0.955	DOWNSTREAM CG11149 & 1 other INTERGENIC
2R	9931296	2R_9931296_SNP [dm3] 2R_14043791_SNP [dm6]	C	T	8.606e^-5	0.955	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	20417148	2L_20417148_SNP [dm3] 2L_20417148_SNP [dm6]	C	T	8.627e^-5	0.955	UTR_5_PRIME Arpc2 UPSTREAM CG10949	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	9680284	2R_9680284_SNP [dm3] 2R_13792779_SNP [dm6]	G	A	8.679e^-5	0.955	DOWNSTREAM CR43811 INTERGENIC
2L	15140673	2L_15140673_SNP [dm3] 2L_15140673_SNP [dm6]	C	T	8.681e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	17933312	X_17933312_SNP [dm3] X_18039279_SNP [dm6]	G	A	8.683e^-5	0.955	START_GAINED Sh UTR_5_PRIME Sh
3R	1742137	3R_1742137_SNP [dm3] 3R_5916415_SNP [dm6]	A	G	8.823e^-5	0.955	INTRON CG34113
3L	5797502	3L_5797502_SNP [dm3] 3L_5804402_SNP [dm6]	G	A	8.831e^-5	0.955	NON_SYNONYMOUS_CODING CG42272 INTRON S6k	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17982277	3R_17982277_SNP [dm3] 3R_22156555_SNP [dm6]	A	T	8.874e^-5	0.955	INTRON SKIP
2L	5531558	2L_5531558_SNP [dm3] 2L_5531558_SNP [dm6]	T	A	8.920e^-5	0.955	NON_SYNONYMOUS_CODING CG7277 DOWNSTREAM CG31915 INTRON Cap-D3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17150308	3L_17150308_SNP [dm3] 3L_17157208_SNP [dm6]	C	G	8.992e^-5	0.955	INTRON Rbp6
2R	12563207	2R_12563207_SNP [dm3] 2R_16675702_SNP [dm6]	A	C	9.099e^-5	0.955	INTRON CG30463
2R	9675072	2R_9675072_SNP [dm3] 2R_13787567_SNP [dm6]	A	C	9.125e^-5	0.955	UTR_3_PRIME Cpr50Ca
X	6126570	X_6126570_SNP [dm3] X_6232537_SNP [dm6]	A	T	9.162e^-5	0.955	UTR_3_PRIME CG14446
3R	26490529	3R_26490529_SNP [dm3] 3R_30664807_SNP [dm6]	C	A	9.431e^-5	0.955	EXON CR45191
2R	14676242	2R_14676242_SNP [dm3] 2R_18788737_SNP [dm6]	T	C	9.524e^-5	0.955	INTRON CG15080
3L	10836696	3L_10836696_INS [dm3] 3L_10843596_INS [dm6]	C	CAAGTC	9.545e^-5	0.955	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10033162	2R_10033162_SNP [dm3] 2R_14145657_SNP [dm6]	T	A	9.755e^-5	0.955	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	10023555	2R_10023555_DEL [dm3] 2R_14136050_DEL [dm6]	TT	T	9.757e^-5	0.955	INTRON Prosap
3L	7447890	3L_7447890_SNP [dm3] 3L_7454790_SNP [dm6]	G	C	9.776e^-5	0.955	DOWNSTREAM CG42458 INTERGENIC
X	16946904	X_16946904_SNP [dm3] X_17052871_SNP [dm6]	G	T	9.805e^-5	0.955	INTRON CG45002
2R	7534558	2R_7534558_SNP [dm3] 2R_11647053_SNP [dm6]	A	C	9.807e^-5	0.955	UPSTREAM CG9003 INTRON CG9003	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7443740	3L_7443740_SNP [dm3] 3L_7450640_SNP [dm6]	A	G	9.901e^-5	0.955	UPSTREAM CG33278 INTRON CG42458	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11943626	2R_11943626_SNP [dm3] 2R_16056121_SNP [dm6]	G	C	1.001e^-4	0.955	INTRON CG8405
X	13170373	X_13170373_INS [dm3] X_13276340_INS [dm6]	T	TATGT	1.002e^-4	0.955	INTRON HDAC4
3L	18958052	3L_18958052_SNP [dm3] 3L_18964952_SNP [dm6]	A	G	1.021e^-4	0.955	INTERGENIC
2R	19390250	2R_19390250_SNP [dm3] 2R_23502727_SNP [dm6]	C	T	1.021e^-4	0.955	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
2R	12072897	2R_12072897_SNP [dm3] 2R_16185392_SNP [dm6]	C	T	1.022e^-4	0.955	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	14925232	2R_14925232_SNP [dm3] 2R_19037727_SNP [dm6]	T	A	1.026e^-4	0.955	INTERGENIC
3R	26640139	3R_26640139_SNP [dm3] 3R_30814417_SNP [dm6]	G	C	1.028e^-4	0.955	INTRON cindr	TF binding site BDTNP1_TFBS_twi
2R	16294795	2R_16294795_SNP [dm3] 2R_20407290_SNP [dm6]	G	T	1.035e^-4	0.955	INTERGENIC
2R	3165442	2R_3165442_SNP [dm3] 2R_7277937_SNP [dm6]	T	C	1.040e^-4	0.955	UTR_5_PRIME Br140 UPSTREAM Incenp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2254163	3L_2254163_SNP [dm3] 3L_2254163_SNP [dm6]	G	A	1.057e^-4	0.955	INTRON CG1275	TF binding site mE1_TFBS_cad
2R	18572946	2R_18572946_SNP [dm3] 2R_22685441_SNP [dm6]	C	T	1.073e^-4	0.955	UTR_3_PRIME ppa DOWNSTREAM ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	9677887	2R_9677887_DEL [dm3] 2R_13790382_DEL [dm6]	TCCTTAGTATGAAGTACCTC...	T	1.081e^-4	0.955	INTERGENIC
2R	9678044	2R_9678044_SNP [dm3] 2R_13790539_SNP [dm6]	T	A	1.100e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4051252	2L_4051252_SNP [dm3] 2L_4051252_SNP [dm6]	T	A	1.100e^-4	0.955	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12145080	2R_12145080_DEL [dm3] 2R_16257575_DEL [dm6]	CTCTTCCCG	C	1.103e^-4	0.955	INTRON CngA
2R	9675690	2R_9675690_DEL [dm3] 2R_13788185_DEL [dm6]	TAT	T	1.113e^-4	0.955	DOWNSTREAM Cpr50Ca INTERGENIC
3R	9702489	3R_9702489_SNP [dm3] 3R_13876767_SNP [dm6]	C	G	1.115e^-4	0.955	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4744157	3L_4744157_SNP [dm3] 3L_4744157_SNP [dm6]	C	T	1.118e^-4	0.955	INTRON RhoGEF64C
2R	12277047	2R_12277047_SNP [dm3] 2R_16389542_SNP [dm6]	C	T	1.121e^-4	0.955	INTRON Sema-2b
2R	14925238	2R_14925238_SNP [dm3] 2R_19037733_SNP [dm6]	G	C	1.122e^-4	0.955	INTERGENIC
2L	9830863	2L_9830863_SNP [dm3] 2L_9830863_SNP [dm6]	C	A	1.134e^-4	0.955	INTRON nAChRalpha6
2R	3165301	2R_3165301_SNP [dm3] 2R_7277796_SNP [dm6]	G	A	1.141e^-4	0.955	SYNONYMOUS_CODING Br140 UPSTREAM Incenp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12520293	3L_12520293_SNP [dm3] 3L_12527193_SNP [dm6]	A	T	1.142e^-4	0.955	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6487544	2L_6487544_SNP [dm3] 2L_6487544_SNP [dm6]	T	G	1.151e^-4	0.955	UTR_3_PRIME DLP & 1 other DOWNSTREAM KFase & 1 other	TF binding site mE1_TFBS_cad
3L	14386551	3L_14386551_SNP [dm3] 3L_14393451_SNP [dm6]	A	T	1.158e^-4	0.955	INTERGENIC
2R	9677881	2R_9677881_SNP [dm3] 2R_13790376_SNP [dm6]	G	A	1.164e^-4	0.955	INTERGENIC
2R	10033113	2R_10033113_SNP [dm3] 2R_14145608_SNP [dm6]	C	A	1.172e^-4	0.955	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	9795739	2R_9795739_SNP [dm3] 2R_13908234_SNP [dm6]	G	A	1.172e^-4	0.955	START_GAINED shot UTR_5_PRIME shot INTRON shot	TF binding site mE1_TFBS_cad
X	15295871	X_15295871_SNP [dm3] X_15401838_SNP [dm6]	C	T	1.172e^-4	0.955	INTRON Cngl	TF binding site BDTNP1_TFBS_dl
2L	5439206	2L_5439206_SNP [dm3] 2L_5439206_SNP [dm6]	A	G	1.177e^-4	0.955	INTRON CR31647
2L	5101172	2L_5101172_INS [dm3] 2L_5101172_INS [dm6]	A	AC	1.192e^-4	0.955	UPSTREAM CG8680 INTRON Msp300
3R	13283483	3R_13283483_SNP [dm3] 3R_17457761_SNP [dm6]	C	T	1.207e^-4	0.955	UPSTREAM CG14330 INTERGENIC
3L	3916871	3L_3916871_SNP [dm3] 3L_3916871_SNP [dm6]	A	G	1.216e^-4	0.955	INTRON Eip63F-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7900843	2R_7900843_SNP [dm3] 2R_12013338_SNP [dm6]	G	A	1.217e^-4	0.955	INTRON otk	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	12241397	2L_12241397_SNP [dm3] 2L_12241397_SNP [dm6]	T	C	1.218e^-4	0.955	SYNONYMOUS_CODING aret INTRON aret	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23610193	3R_23610193_SNP [dm3] 3R_27784471_SNP [dm6]	A	C	1.228e^-4	0.955	INTRON CG34353
3R	19919068	3R_19919068_SNP [dm3] 3R_24093346_SNP [dm6]	G	A	1.235e^-4	0.955	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17426972	X_17426972_SNP [dm3] X_17532939_SNP [dm6]	C	T	1.237e^-4	0.955	SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	26868621	3R_26868621_SNP [dm3] 3R_31042899_SNP [dm6]	T	C	1.239e^-4	0.955	INTRON CanA1
2L	945241	2L_945241_SNP [dm3] 2L_945241_SNP [dm6]	T	C	1.243e^-4	0.955	INTRON CG4341
3L	11577499	3L_11577499_SNP [dm3] 3L_11584399_SNP [dm6]	A	G	1.250e^-4	0.955	SYNONYMOUS_CODING rt UPSTREAM CG32086	TF binding site mE1_TFBS_cad
2R	18555972	2R_18555972_SNP [dm3] 2R_22668467_SNP [dm6]	G	T	1.253e^-4	0.955	UPSTREAM CG13516 DOWNSTREAM CG30273 INTRON CG30269	TF binding site mE1_TFBS_cad
2L	665014	2L_665014_SNP [dm3] 2L_665014_SNP [dm6]	G	A	1.255e^-4	0.955	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3724692	2R_3724692_SNP [dm3] 2R_7837187_SNP [dm6]	G	C	1.260e^-4	0.955	INTRON Dgk	TF binding site mE1_TFBS_chinmo
X	16602183	X_16602183_SNP [dm3] X_16708150_SNP [dm6]	T	C	1.261e^-4	0.955	INTRON CG4678
2R	14994295	2R_14994295_SNP [dm3] 2R_19106790_SNP [dm6]	G	A	1.263e^-4	0.955	INTRON 5-HT1A
2R	12627316	2R_12627316_SNP [dm3] 2R_16739811_SNP [dm6]	T	A	1.270e^-4	0.955	INTERGENIC
2L	20405796	2L_20405796_SNP [dm3] 2L_20405796_SNP [dm6]	C	A	1.271e^-4	0.955	INTRON CG10947
3R	27448808	3R_27448808_SNP [dm3] 3R_31623086_SNP [dm6]	G	A	1.285e^-4	0.955	DOWNSTREAM pasha INTRON kek6
2R	18618277	2R_18618277_SNP [dm3] 2R_22730772_SNP [dm6]	G	A	1.289e^-4	0.955	INTRON jbug
2L	10431187	2L_10431187_SNP [dm3] 2L_10431187_SNP [dm6]	A	T	1.295e^-4	0.955	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14574598	2L_14574598_SNP [dm3] 2L_14574598_SNP [dm6]	A	C	1.302e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13739049	2R_13739049_SNP [dm3] 2R_17851544_SNP [dm6]	G	T	1.304e^-4	0.955	INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3L	17156863	3L_17156863_SNP [dm3] 3L_17163763_SNP [dm6]	T	C	1.307e^-4	0.955	INTRON Rbp6
2R	10033124	2R_10033124_SNP [dm3] 2R_14145619_SNP [dm6]	T	C	1.307e^-4	0.955	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	5604337	3L_5604337_SNP [dm3] 3L_5611237_SNP [dm6]	A	G	1.308e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2R	17647629	2R_17647629_SNP [dm3] 2R_21760124_SNP [dm6]	T	A	1.309e^-4	0.955	INTERGENIC
3L	2545655	3L_2545655_SNP [dm3] 3L_2545655_SNP [dm6]	C	A	1.310e^-4	0.955	INTRON Spn
3L	4242625	3L_4242625_SNP [dm3] 3L_4242625_SNP [dm6]	T	C	1.311e^-4	0.955	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	17647635	2R_17647635_INS [dm3] 2R_21760130_INS [dm6]	C	CC	1.323e^-4	0.955	INTERGENIC
3L	10699635	3L_10699635_SNP [dm3] 3L_10706535_SNP [dm6]	A	C	1.328e^-4	0.955	INTERGENIC
2R	12073825	2R_12073825_DEL [dm3] 2R_16186320_DEL [dm6]	CCTCAACGACGC...	A	1.329e^-4	0.955	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6793091	2R_6793091_SNP [dm3] 2R_10905586_SNP [dm6]	C	T	1.349e^-4	0.955	DOWNSTREAM CG12943 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5924839	2L_5924839_SNP [dm3] 2L_5924839_SNP [dm6]	T	C	1.353e^-4	0.955	DOWNSTREAM CR43926 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1309109	3L_1309109_SNP [dm3] 3L_1309109_SNP [dm6]	A	G	1.354e^-4	0.955	SYNONYMOUS_CODING CG2469	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8521991	3R_8521991_SNP [dm3] 3R_12696269_SNP [dm6]	G	A	1.356e^-4	0.955	SYNONYMOUS_CODING NijC
2R	7123052	2R_7123052_SNP [dm3] 2R_11235547_SNP [dm6]	C	T	1.359e^-4	0.955	SYNONYMOUS_CODING CG13227 UPSTREAM CG34223 DOWNSTREAM CG13217	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6607841	2L_6607841_SNP [dm3] 2L_6607841_SNP [dm6]	T	C	1.360e^-4	0.955	INTERGENIC
X	8100507	X_8100507_SNP [dm3] X_8206474_SNP [dm6]	C	A	1.373e^-4	0.955	INTRON sdt
2R	9799339	2R_9799339_INS [dm3] 2R_13911834_INS [dm6]	A	AACA	1.386e^-4	0.955	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	16946980	X_16946980_DEL [dm3] X_17052947_DEL [dm6]	GG	G	1.399e^-4	0.955	INTRON CG45002
X	11873309	X_11873309_SNP [dm3] X_11979276_SNP [dm6]	T	G	1.402e^-4	0.955	INTRON cac
3L	2254242	3L_2254242_SNP [dm3] 3L_2254242_SNP [dm6]	G	C	1.410e^-4	0.955	INTRON CG1275	TF binding site mE1_TFBS_cad
2L	6487447	2L_6487447_SNP [dm3] 2L_6487447_SNP [dm6]	C	A	1.412e^-4	0.955	UTR_3_PRIME DLP & 1 other DOWNSTREAM KFase & 1 other	TF binding site mE1_TFBS_cad
2R	12073840	2R_12073840_SNP [dm3] 2R_16186335_SNP [dm6]	T	A	1.416e^-4	0.955	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14925369	2R_14925369_SNP [dm3] 2R_19037864_SNP [dm6]	C	A	1.418e^-4	0.955	INTERGENIC
3L	7266474	3L_7266474_SNP [dm3] 3L_7273374_SNP [dm6]	G	A	1.432e^-4	0.955	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
3L	485008	3L_485008_SNP [dm3] 3L_485008_SNP [dm6]	A	G	1.439e^-4	0.955	INTRON klar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	19319746	3L_19319746_SNP [dm3] 3L_19326646_SNP [dm6]	G	T	1.441e^-4	0.955	INTRON pip
3L	2545488	3L_2545488_SNP [dm3] 3L_2545488_SNP [dm6]	A	G	1.444e^-4	0.955	INTRON Spn
3L	18958057	3L_18958057_SNP [dm3] 3L_18964957_SNP [dm6]	T	A	1.448e^-4	0.955	INTERGENIC
X	17055649	X_17055649_DEL [dm3] X_17161616_DEL [dm6]	AAA	A	1.458e^-4	0.955	INTRON baz	TF binding site BDTNP1_TFBS_dl
2R	18555985	2R_18555985_SNP [dm3] 2R_22668480_SNP [dm6]	C	T	1.460e^-4	0.955	UPSTREAM CG13516 DOWNSTREAM CG30273 INTRON CG30269	TF binding site mE1_TFBS_cad
3R	25202115	3R_25202115_SNP [dm3] 3R_29376393_SNP [dm6]	A	T	1.461e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10033073	2R_10033073_SNP [dm3] 2R_14145568_SNP [dm6]	C	T	1.462e^-4	0.955	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	21908284	2L_21908284_SNP [dm3] 2L_21908284_SNP [dm6]	G	T	1.470e^-4	0.955	UTR_3_PRIME CG1428	TF binding site mE1_TFBS_cad
3L	16343226	3L_16343226_SNP [dm3] 3L_16350126_SNP [dm6]	C	T	1.472e^-4	0.955	NON_SYNONYMOUS_CODING CG4925 DOWNSTREAM tRNA:CR32357
2R	19138966	2R_19138966_SNP [dm3] 2R_23251443_SNP [dm6]	A	C	1.474e^-4	0.955	INTERGENIC
2R	19390248	2R_19390248_SNP [dm3] 2R_23502725_SNP [dm6]	G	T	1.486e^-4	0.955	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
3L	19319744	3L_19319744_INS [dm3] 3L_19326644_INS [dm6]	A	AAAGGCTC	1.489e^-4	0.955	INTRON pip
3L	11515743	3L_11515743_SNP [dm3] 3L_11522643_SNP [dm6]	A	G	1.493e^-4	0.955	UTR_5_PRIME CG11714 DOWNSTREAM Mob2
3L	2649493	3L_2649493_SNP [dm3] 3L_2649493_SNP [dm6]	C	T	1.495e^-4	0.955	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2R	12297972	2R_12297972_INS [dm3] 2R_16410467_INS [dm6]	A	ACTC	1.500e^-4	0.955	INTRON Sema-2b
2L	4994383	2L_4994383_SNP [dm3] 2L_4994383_SNP [dm6]	A	G	1.500e^-4	0.955	SYNONYMOUS_CODING Rtnl1
3L	7769451	3L_7769451_SNP [dm3] 3L_7776351_SNP [dm6]	A	T	1.509e^-4	0.955	UPSTREAM Clk DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
2R	9679404	2R_9679404_SNP [dm3] 2R_13791899_SNP [dm6]	G	A	1.510e^-4	0.955	UPSTREAM CR43811 INTERGENIC
2R	1534413	2R_1534413_SNP [dm3] 2R_5646908_SNP [dm6]	T	C	1.512e^-4	0.955	INTRON CG11665
3L	2019340	3L_2019340_SNP [dm3] 3L_2019340_SNP [dm6]	C	T	1.523e^-4	0.955	INTERGENIC
3L	20867610	3L_20867610_SNP [dm3] 3L_20874510_SNP [dm6]	C	A	1.536e^-4	0.955	INTRON CG32432
2R	9976701	2R_9976701_SNP [dm3] 2R_14089196_SNP [dm6]	C	A	1.538e^-4	0.955	INTRON Prosap
2R	10014170	2R_10014170_SNP [dm3] 2R_14126665_SNP [dm6]	A	C	1.545e^-4	0.955	INTRON Prosap
3R	17735688	3R_17735688_SNP [dm3] 3R_21909966_SNP [dm6]	A	T	1.546e^-4	0.955	INTERGENIC
3R	20807100	3R_20807100_INS [dm3] 3R_24981378_INS [dm6]	G	GG	1.550e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	16947018	X_16947018_DEL [dm3] X_17052985_DEL [dm6]	TTGTAATATATTATATATAT...	GG	1.556e^-4	0.955	INTRON CG45002
3L	4242612	3L_4242612_SNP [dm3] 3L_4242612_SNP [dm6]	G	C	1.572e^-4	0.955	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	10964480	3L_10964480_SNP [dm3] 3L_10971380_SNP [dm6]	T	C	1.575e^-4	0.955	INTERGENIC
3L	16054972	3L_16054972_SNP [dm3] 3L_16061872_SNP [dm6]	A	T	1.579e^-4	0.955	INTRON Mbs
2R	4912376	2R_4912376_SNP [dm3] 2R_9024871_SNP [dm6]	C	G	1.583e^-4	0.955	INTRON CG8170	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10836909	3L_10836909_SNP [dm3] 3L_10843809_SNP [dm6]	T	C	1.585e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	18975075	2R_18975075_SNP [dm3] 2R_23087552_SNP [dm6]	C	G	1.604e^-4	0.955	NON_SYNONYMOUS_CODING CG13538
2L	1111988	2L_1111988_SNP [dm3] 2L_1111988_SNP [dm6]	T	C	1.606e^-4	0.955	UPSTREAM CG14340 INTRON CG14339	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19282276	X_19282276_SNP [dm3] X_19388243_SNP [dm6]	A	C	1.618e^-4	0.955	INTRON kek5
2R	9184100	2R_9184100_SNP [dm3] 2R_13296595_SNP [dm6]	T	A	1.621e^-4	0.955	UPSTREAM Dh31-R DOWNSTREAM CG4734 INTERGENIC
X	16946914	X_16946914_DEL [dm3] X_17052881_DEL [dm6]	TTTTTTATCACATCTAT...	T	1.626e^-4	0.955	INTRON CG45002
3R	13899615	3R_13899615_SNP [dm3] 3R_18073893_SNP [dm6]	A	T	1.630e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12145515	2R_12145515_SNP [dm3] 2R_16258010_SNP [dm6]	G	C	1.635e^-4	0.955	INTRON CngA
2R	13384857	2R_13384857_SNP [dm3] 2R_17497352_SNP [dm6]	G	A	1.644e^-4	0.955	INTERGENIC
2R	18556415	2R_18556415_SNP [dm3] 2R_22668910_SNP [dm6]	C	T	1.645e^-4	0.955	UPSTREAM CG13516 DOWNSTREAM CG30273 & 1 other INTERGENIC
2L	4132014	2L_4132014_SNP [dm3] 2L_4132014_SNP [dm6]	C	T	1.653e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4242340	3L_4242340_SNP [dm3] 3L_4242340_SNP [dm6]	C	T	1.656e^-4	0.955	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	12520649	2L_12520649_SNP [dm3] 2L_12520649_SNP [dm6]	G	T	1.664e^-4	0.955	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_ttk
2R	8114508	2R_8114508_SNP [dm3] 2R_12227003_SNP [dm6]	C	T	1.668e^-4	0.955	UPSTREAM CG8854 INTRON CG8854
3L	10767859	3L_10767859_SNP [dm3] 3L_10774759_SNP [dm6]	A	G	1.690e^-4	0.955	INTERGENIC
2R	11189752	2R_11189752_SNP [dm3] 2R_15302247_SNP [dm6]	G	C	1.691e^-4	0.955	INTRON Trpm	TF binding site mE1_TFBS_inv
X	1213593	X_1213593_SNP [dm3] X_1319560_SNP [dm6]	T	C	1.693e^-4	0.955	INTRON DAAM
2L	4892570	2L_4892570_SNP [dm3] 2L_4892570_SNP [dm6]	A	G	1.697e^-4	0.955	UTR_5_PRIME CG3036 UPSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
X	5076530	X_5076530_SNP [dm3] X_5182497_SNP [dm6]	C	T	1.698e^-4	0.955	UPSTREAM CG5062 INTRON rg & 1 other
3L	13225309	3L_13225309_SNP [dm3] 3L_13232209_SNP [dm6]	C	A	1.703e^-4	0.955	INTRON caps
2R	18556728	2R_18556728_SNP [dm3] 2R_22669223_SNP [dm6]	A	G	1.718e^-4	0.955	START_GAINED CG13516 UTR_5_PRIME CG13516 UPSTREAM CG13516 DOWNSTREAM CG30269	TF binding site mE1_TFBS_chinmo
2R	19119464	2R_19119464_SNP [dm3] 2R_23231941_SNP [dm6]	G	A	1.724e^-4	0.955	UPSTREAM CG3092 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
X	1221985	X_1221985_SNP [dm3] X_1327952_SNP [dm6]	G	A	1.726e^-4	0.955	SYNONYMOUS_CODING fs_1_N
2R	19138965	2R_19138965_SNP [dm3] 2R_23251442_SNP [dm6]	G	T	1.731e^-4	0.955	INTERGENIC
2R	9799529	2R_9799529_INS [dm3] 2R_13912024_INS [dm6]	G	GG	1.736e^-4	0.955	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	13197656	3R_13197656_SNP [dm3] 3R_17371934_SNP [dm6]	C	G	1.743e^-4	0.955	UPSTREAM CR44256 INTERGENIC
2R	12562506	2R_12562506_SNP [dm3] 2R_16675001_SNP [dm6]	T	C	1.760e^-4	0.955	INTRON CG30463
2R	8561054	2R_8561054_SNP [dm3] 2R_12673549_SNP [dm6]	A	C	1.763e^-4	0.955	INTRON CG42708	TF binding site mE1_TFBS_cad
2L	14071225	2L_14071225_SNP [dm3] 2L_14071225_SNP [dm6]	A	G	1.765e^-4	0.955	INTRON nAChRalpha5
3L	17527297	3L_17527297_SNP [dm3] 3L_17534197_SNP [dm6]	T	C	1.775e^-4	0.955	INTRON Nedd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22449876	3R_22449876_SNP [dm3] 3R_26624154_SNP [dm6]	G	T	1.778e^-4	0.955	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
3R	14063375	3R_14063375_SNP [dm3] 3R_18237653_SNP [dm6]	T	A	1.782e^-4	0.955	INTRON repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3775818	3L_3775818_SNP [dm3] 3L_3775818_SNP [dm6]	C	G	1.788e^-4	0.955	INTRON CG32264
2R	18556536	2R_18556536_SNP [dm3] 2R_22669031_SNP [dm6]	A	G	1.807e^-4	0.955	UPSTREAM CG13516 DOWNSTREAM CG30269 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8148641	3R_8148641_SNP [dm3] 3R_12322919_SNP [dm6]	A	G	1.808e^-4	0.955	UPSTREAM CG10013 & 1 other INTERGENIC
2R	10033080	2R_10033080_SNP [dm3] 2R_14145575_SNP [dm6]	G	C	1.809e^-4	0.955	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	9920615	2R_9920615_SNP [dm3] 2R_14033110_SNP [dm6]	C	T	1.813e^-4	0.955	INTRON mam
2R	12109637	2R_12109637_SNP [dm3] 2R_16222132_SNP [dm6]	T	A	1.818e^-4	0.955	UTR_3_PRIME CG7798 UPSTREAM mrj INTRON CR43898	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8804957	2L_8804957_SNP [dm3] 2L_8804957_SNP [dm6]	T	G	1.820e^-4	0.955	INTERGENIC
2L	1263299	2L_1263299_SNP [dm3] 2L_1263299_SNP [dm6]	A	T	1.821e^-4	0.955	INTRON robo3
2R	14925181	2R_14925181_SNP [dm3] 2R_19037676_SNP [dm6]	G	T	1.825e^-4	0.955	INTERGENIC
X	2590894	X_2590894_SNP [dm3] X_2696861_SNP [dm6]	A	G	1.834e^-4	0.955	SPLICE_SITE_REGION CG2658 INTRON CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18556539	2R_18556539_SNP [dm3] 2R_22669034_SNP [dm6]	A	G	1.835e^-4	0.955	UPSTREAM CG13516 DOWNSTREAM CG30269 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16997266	X_16997266_SNP [dm3] X_17103233_SNP [dm6]	G	C	1.842e^-4	0.955	SYNONYMOUS_CODING CG4991
3R	8488105	3R_8488105_SNP [dm3] 3R_12662383_SNP [dm6]	T	A	1.847e^-4	0.955	UPSTREAM CG14395 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18978735	2R_18978735_SNP [dm3] 2R_23091212_SNP [dm6]	T	G	1.852e^-4	0.955	INTRON CG9876	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	9830862	2L_9830862_SNP [dm3] 2L_9830862_SNP [dm6]	C	A	1.858e^-4	0.955	INTRON nAChRalpha6
3R	2437585	3R_2437585_SNP [dm3] 3R_6611863_SNP [dm6]	A	G	1.865e^-4	0.955	INTERGENIC
2L	1675518	2L_1675518_SNP [dm3] 2L_1675518_SNP [dm6]	A	G	1.871e^-4	0.955	INTRON chinmo
2L	7843438	2L_7843438_SNP [dm3] 2L_7843438_SNP [dm6]	T	C	1.872e^-4	0.955	INTERGENIC
2R	9796388	2R_9796388_SNP [dm3] 2R_13908883_SNP [dm6]	C	G	1.873e^-4	0.955	INTRON shot
2R	9796405	2R_9796405_SNP [dm3] 2R_13908900_SNP [dm6]	C	T	1.873e^-4	0.955	INTRON shot
2R	12145781	2R_12145781_SNP [dm3] 2R_16258276_SNP [dm6]	T	C	1.876e^-4	0.955	INTRON CngA
2L	6410670	2L_6410670_SNP [dm3] 2L_6410670_SNP [dm6]	T	C	1.877e^-4	0.955	INTRON CG42368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14151921	X_14151921_SNP [dm3] X_14257888_SNP [dm6]	T	C	1.877e^-4	0.955	SYNONYMOUS_CODING mud UTR_3_PRIME mud INTRON mud	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18556693	2R_18556693_SNP [dm3] 2R_22669188_SNP [dm6]	C	T	1.877e^-4	0.955	START_GAINED CG13516 UTR_5_PRIME CG13516 UPSTREAM CG13516 DOWNSTREAM CG30269	TF binding site mE1_TFBS_chinmo
3L	6856271	3L_6856271_SNP [dm3] 3L_6863171_SNP [dm6]	T	C	1.881e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_sens
2R	3114337	2R_3114337_SNP [dm3] 2R_7226832_SNP [dm6]	T	C	1.893e^-4	0.955	INTERGENIC
2R	14456869	2R_14456869_SNP [dm3] 2R_18569364_SNP [dm6]	C	G	1.899e^-4	0.955	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14792009	2R_14792009_SNP [dm3] 2R_18904504_SNP [dm6]	T	G	1.902e^-4	0.955	INTRON sano	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20191583	2R_20191583_SNP [dm3] 2R_24304060_SNP [dm6]	C	G	1.903e^-4	0.955	INTERGENIC	regulatory region REDfly_CRMs
2R	10033118	2R_10033118_SNP [dm3] 2R_14145613_SNP [dm6]	T	G	1.904e^-4	0.955	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	16946999	X_16946999_SNP [dm3] X_17052966_SNP [dm6]	A	T	1.907e^-4	0.955	INTRON CG45002
2L	4799922	2L_4799922_SNP [dm3] 2L_4799922_SNP [dm6]	G	A	1.909e^-4	0.955	INTRON Clect27	TF binding site mE1_TFBS_cad
X	1213768	X_1213768_SNP [dm3] X_1319735_SNP [dm6]	A	G	1.911e^-4	0.955	INTRON DAAM
3L	5216233	3L_5216233_SNP [dm3] 3L_5223133_SNP [dm6]	C	G	1.924e^-4	0.955	INTRON shep
3L	12643975	3L_12643975_SNP [dm3] 3L_12650875_SNP [dm6]	C	T	1.933e^-4	0.955	INTRON CR43431	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	2280705	3L_2280705_SNP [dm3] 3L_2280705_SNP [dm6]	T	C	1.937e^-4	0.955	INTERGENIC
3R	13880663	3R_13880663_SNP [dm3] 3R_18054941_SNP [dm6]	A	C	1.951e^-4	0.955	INTERGENIC
3L	6388926	3L_6388926_SNP [dm3] 3L_6395826_SNP [dm6]	G	A	1.951e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1820135	2R_1820135_SNP [dm3] 2R_5932630_SNP [dm6]	G	A	1.960e^-4	0.955	INTERGENIC
2L	7223743	2L_7223743_SNP [dm3] 2L_7223743_SNP [dm6]	A	G	1.972e^-4	0.955	UPSTREAM ico DOWNSTREAM Ndae1 INTRON Ndae1	TF binding site mE1_TFBS_zfh1
2L	15194567	2L_15194567_SNP [dm3] 2L_15194567_SNP [dm6]	T	C	1.980e^-4	0.955	INTRON CG4168
2R	20195624	2R_20195624_SNP [dm3] 2R_24308101_SNP [dm6]	C	T	1.982e^-4	0.955	INTRON betaTub60D	regulatory region REDfly_CRMs
3R	26867953	3R_26867953_SNP [dm3] 3R_31042231_SNP [dm6]	T	G	1.989e^-4	0.955	INTRON CanA1	TF binding site BDTNP1_TFBS_twi
3R	4545445	3R_4545445_SNP [dm3] 3R_8719723_SNP [dm6]	C	T	2.003e^-4	0.955	INTRON CG8116 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10074004	2R_10074004_SNP [dm3] 2R_14186499_SNP [dm6]	G	C	2.008e^-4	0.955	SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13192097	3R_13192097_SNP [dm3] 3R_17366375_SNP [dm6]	A	G	2.008e^-4	0.955	UPSTREAM beat-IIa INTERGENIC
2R	9680213	2R_9680213_DEL [dm3] 2R_13792708_DEL [dm6]	AAA	A	2.009e^-4	0.955	DOWNSTREAM CR43811 INTERGENIC
3L	13225390	3L_13225390_SNP [dm3] 3L_13232290_SNP [dm6]	C	A	2.010e^-4	0.955	INTRON caps
2R	1357083	2R_1357083_SNP [dm3] 2R_5469578_SNP [dm6]	G	C	2.014e^-4	0.955	INTRON CG30440	transposable element FlyBase
2R	17649071	2R_17649071_SNP [dm3] 2R_21761566_SNP [dm6]	A	G	2.017e^-4	0.955	INTERGENIC
2L	3197191	2L_3197191_SNP [dm3] 2L_3197191_SNP [dm6]	A	T	2.026e^-4	0.955	INTRON CG34393
3L	9691869	3L_9691869_SNP [dm3] 3L_9698769_SNP [dm6]	T	A	2.029e^-4	0.955	INTRON UbcD4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19918853	3R_19918853_SNP [dm3] 3R_24093131_SNP [dm6]	C	T	2.032e^-4	0.955	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20684373	X_20684373_SNP [dm3] X_20813346_SNP [dm6]	C	T	2.034e^-4	0.955	INTRON shakB
2R	8531884	2R_8531884_SNP [dm3] 2R_12644379_SNP [dm6]	A	G	2.038e^-4	0.955	INTRON CG8785	TF binding site mE1_TFBS_cad
2R	13485788	2R_13485788_SNP [dm3] 2R_17598283_SNP [dm6]	C	T	2.038e^-4	0.955	DOWNSTREAM CG11423 & 1 other INTRON lack	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9184725	2R_9184725_SNP [dm3] 2R_13297220_SNP [dm6]	A	C	2.076e^-4	0.955	UTR_3_PRIME CG4734
3R	22741245	3R_22741245_SNP [dm3] 3R_26915523_SNP [dm6]	T	C	2.082e^-4	0.955	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16946993	X_16946993_SNP [dm3] X_17052960_SNP [dm6]	T	A	2.088e^-4	0.955	INTRON CG45002
2L	5718223	2L_5718223_SNP [dm3] 2L_5718223_SNP [dm6]	G	T	2.093e^-4	0.955	UTR_3_PRIME CG11149 DOWNSTREAM CG34011
2R	20191666	2R_20191666_SNP [dm3] 2R_24304143_SNP [dm6]	C	A	2.094e^-4	0.955	INTERGENIC	regulatory region REDfly_CRMs
2L	6112808	2L_6112808_SNP [dm3] 2L_6112808_SNP [dm6]	A	C	2.097e^-4	0.955	INTRON stai
3L	1361798	3L_1361798_SNP [dm3] 3L_1361798_SNP [dm6]	A	G	2.100e^-4	0.955	INTRON Ptp61F
2R	6546014	2R_6546014_SNP [dm3] 2R_10658509_SNP [dm6]	C	A	2.108e^-4	0.955	UPSTREAM CR44452 INTERGENIC
2R	15965570	2R_15965570_INS [dm3] 2R_20078065_INS [dm6]	A	AGATATATGTA...	2.109e^-4	0.955	INTERGENIC
2L	5718199	2L_5718199_SNP [dm3] 2L_5718199_SNP [dm6]	T	C	2.128e^-4	0.955	UTR_3_PRIME CG11149 DOWNSTREAM CG34011
X	6642200	X_6642200_SNP [dm3] X_6748167_SNP [dm6]	T	C	2.135e^-4	0.955	UPSTREAM CR44964 INTRON CG14439
2L	19884952	2L_19884952_SNP [dm3] 2L_19884952_SNP [dm6]	A	G	2.149e^-4	0.955	INTRON sick
2R	4132324	2R_4132324_SNP [dm3] 2R_8244819_SNP [dm6]	C	T	2.151e^-4	0.955	UPSTREAM CR44446 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_z
2L	9908155	2L_9908155_SNP [dm3] 2L_9908155_SNP [dm6]	A	G	2.154e^-4	0.955	DOWNSTREAM Etl1 INTRON CG13124	TF binding site BDTNP1_TFBS_dl
2L	10125804	2L_10125804_SNP [dm3] 2L_10125804_SNP [dm6]	G	T	2.161e^-4	0.955	DOWNSTREAM CG34109 INTRON CG44153
2L	20423766	2L_20423766_SNP [dm3] 2L_20423766_SNP [dm6]	A	T	2.161e^-4	0.955	DOWNSTREAM Arpc2 INTRON CG15130
X	6474041	X_6474041_SNP [dm3] X_6580008_SNP [dm6]	G	A	2.164e^-4	0.955	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18515707	3R_18515707_SNP [dm3] 3R_22689985_SNP [dm6]	G	C	2.165e^-4	0.955	NON_SYNONYMOUS_CODING wfs1 UPSTREAM Nup133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18807088	2L_18807088_SNP [dm3] 2L_18807088_SNP [dm6]	C	T	2.169e^-4	0.955	UPSTREAM CR43817 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7720664	2L_7720664_SNP [dm3] 2L_7720664_SNP [dm6]	G	A	2.171e^-4	0.955	NON_SYNONYMOUS_CODING CG13794
X	18420849	X_18420849_SNP [dm3] X_18526816_SNP [dm6]	A	C	2.176e^-4	0.955	DOWNSTREAM CG15042 INTRON Bx	TF binding site mE1_TFBS_inv
2R	15571285	2R_15571285_SNP [dm3] 2R_19683780_SNP [dm6]	A	G	2.180e^-4	0.955	UPSTREAM CG34198 EXON CR44505
3L	17148792	3L_17148792_SNP [dm3] 3L_17155692_SNP [dm6]	T	G	2.187e^-4	0.955	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3676605	3L_3676605_SNP [dm3] 3L_3676605_SNP [dm6]	A	T	2.187e^-4	0.955	INTERGENIC
2R	7596388	2R_7596388_SNP [dm3] 2R_11708883_SNP [dm6]	T	C	2.194e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	18957924	3L_18957924_DEL [dm3] 3L_18964824_DEL [dm6]	TTATAAGTTGCT...	T	2.197e^-4	0.955	INTERGENIC
X	16051787	X_16051787_INS [dm3] X_16157754_INS [dm6]	T	TGAT	2.197e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7011982	2L_7011982_SNP [dm3] 2L_7011982_SNP [dm6]	T	C	2.203e^-4	0.955	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3L	22722797	3L_22722797_SNP [dm3] 3L_22729697_SNP [dm6]	T	C	2.217e^-4	0.955	UPSTREAM CG32454 INTRON CG11367
3L	16342860	3L_16342860_SNP [dm3] 3L_16349760_SNP [dm6]	G	T	2.218e^-4	0.955	SYNONYMOUS_CODING CG4925 UPSTREAM tRNA:CR32357 DOWNSTREAM mRpS34
3L	2117260	3L_2117260_SNP [dm3] 3L_2117260_SNP [dm6]	G	T	2.220e^-4	0.955	DOWNSTREAM zormin INTERGENIC
3L	10836588	3L_10836588_SNP [dm3] 3L_10843488_SNP [dm6]	T	G	2.223e^-4	0.955	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3724660	2R_3724660_SNP [dm3] 2R_7837155_SNP [dm6]	T	A	2.225e^-4	0.955	SYNONYMOUS_CODING Dgk	TF binding site mE1_TFBS_chinmo
3L	13878351	3L_13878351_SNP [dm3] 3L_13885251_SNP [dm6]	A	C	2.232e^-4	0.955	DOWNSTREAM dysc INTRON dysc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25570650	3R_25570650_SNP [dm3] 3R_29744928_SNP [dm6]	C	T	2.233e^-4	0.955	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4744145	3L_4744145_SNP [dm3] 3L_4744145_SNP [dm6]	C	T	2.235e^-4	0.955	INTRON RhoGEF64C
2R	12091172	2R_12091172_SNP [dm3] 2R_16203667_SNP [dm6]	C	T	2.236e^-4	0.955	UTR_3_PRIME mrj UPSTREAM shark
2R	9675888	2R_9675888_SNP [dm3] 2R_13788383_SNP [dm6]	G	A	2.242e^-4	0.955	DOWNSTREAM Cpr50Ca INTERGENIC
2L	5783401	2L_5783401_SNP [dm3] 2L_5783401_SNP [dm6]	T	G	2.247e^-4	0.955	UPSTREAM CG31913 INTRON CG9171
2R	10030337	2R_10030337_SNP [dm3] 2R_14142832_SNP [dm6]	C	A	2.247e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	8561060	2R_8561060_SNP [dm3] 2R_12673555_SNP [dm6]	G	A	2.251e^-4	0.955	INTRON CG42708	TF binding site mE1_TFBS_cad
3L	501074	3L_501074_SNP [dm3] 3L_501074_SNP [dm6]	T	G	2.253e^-4	0.955	UPSTREAM CG34267 INTRON klar & 1 other
3L	3741129	3L_3741129_SNP [dm3] 3L_3741129_SNP [dm6]	C	T	2.276e^-4	0.955	INTRON CG32264
2R	9914288	2R_9914288_SNP [dm3] 2R_14026783_SNP [dm6]	G	A	2.282e^-4	0.955	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	11943627	2R_11943627_SNP [dm3] 2R_16056122_SNP [dm6]	G	A	2.284e^-4	0.955	INTRON CG8405
X	21457547	X_21457547_SNP [dm3] X_21586520_SNP [dm6]	G	C	2.288e^-4	0.955	INTERGENIC
3L	1530930	3L_1530930_SNP [dm3] 3L_1530930_SNP [dm6]	A	G	2.290e^-4	0.955	SYNONYMOUS_CODING Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	9268053	X_9268053_SNP [dm3] X_9374020_SNP [dm6]	T	A	2.293e^-4	0.955	INTRON mgl
2L	10125813	2L_10125813_SNP [dm3] 2L_10125813_SNP [dm6]	C	T	2.310e^-4	0.955	DOWNSTREAM CG34109 INTRON CG44153
2R	9018106	2R_9018106_SNP [dm3] 2R_13130601_SNP [dm6]	G	A	2.319e^-4	0.955	INTRON CG13326	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15225775	2L_15225775_SNP [dm3] 2L_15225775_SNP [dm6]	T	C	2.321e^-4	0.955	INTERGENIC
2L	12090973	2L_12090973_SNP [dm3] 2L_12090973_SNP [dm6]	A	T	2.334e^-4	0.955	UPSTREAM Pex19 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	11264915	X_11264915_SNP [dm3] X_11370882_SNP [dm6]	A	T	2.342e^-4	0.955	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6388981	3L_6388981_SNP [dm3] 3L_6395881_SNP [dm6]	C	T	2.357e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9914329	2R_9914329_SNP [dm3] 2R_14026824_SNP [dm6]	C	G	2.362e^-4	0.955	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	5194257	3L_5194257_SNP [dm3] 3L_5201157_SNP [dm6]	C	A	2.367e^-4	0.955	START_GAINED shep UTR_5_PRIME shep INTRON shep
X	16279824	X_16279824_SNP [dm3] X_16385791_SNP [dm6]	C	T	2.371e^-4	0.955	UPSTREAM CG9992 & 1 other INTRON CG4239	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	4545451	3R_4545451_SNP [dm3] 3R_8719729_SNP [dm6]	T	C	2.374e^-4	0.955	INTRON CG8116 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20430268	2L_20430268_SNP [dm3] 2L_20430268_SNP [dm6]	G	T	2.375e^-4	0.955	INTRON CG31688
2R	12076022	2R_12076022_SNP [dm3] 2R_16188517_SNP [dm6]	G	T	2.378e^-4	0.955	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3022256	3L_3022256_SNP [dm3] 3L_3022256_SNP [dm6]	G	A	2.383e^-4	0.955	INTERGENIC
3R	25570751	3R_25570751_SNP [dm3] 3R_29745029_SNP [dm6]	A	C	2.389e^-4	0.955	START_GAINED CG7609 UTR_5_PRIME CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14307045	2L_14307045_SNP [dm3] 2L_14307045_SNP [dm6]	G	A	2.395e^-4	0.955	INTRON wb
2R	19460827	2R_19460827_SNP [dm3] 2R_23573304_SNP [dm6]	C	T	2.415e^-4	0.955	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4131966	2L_4131966_SNP [dm3] 2L_4131966_SNP [dm6]	G	T	2.415e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	21457297	X_21457297_SNP [dm3] X_21586270_SNP [dm6]	T	C	2.420e^-4	0.955	INTERGENIC
3L	2030638	3L_2030638_SNP [dm3] 3L_2030638_SNP [dm6]	G	A	2.424e^-4	0.955	INTERGENIC
X	3701383	X_3701383_SNP [dm3] X_3807350_SNP [dm6]	T	C	2.425e^-4	0.955	INTRON fd3F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8334285	2R_8334285_SNP [dm3] 2R_12446780_SNP [dm6]	C	A	2.426e^-4	0.955	INTRON Dyb
2R	18778317	2R_18778317_SNP [dm3] 2R_22890794_SNP [dm6]	G	T	2.429e^-4	0.955	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
3L	1142361	3L_1142361_SNP [dm3] 3L_1142361_SNP [dm6]	G	A	2.432e^-4	0.955	SYNONYMOUS_CODING bab2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	12117700	2L_12117700_SNP [dm3] 2L_12117700_SNP [dm6]	T	G	2.436e^-4	0.955	INTRON CG17211
2R	10685213	2R_10685213_SNP [dm3] 2R_14797708_SNP [dm6]	G	A	2.446e^-4	0.955	UPSTREAM kn INTRON kn
3R	10368786	3R_10368786_SNP [dm3] 3R_14543064_SNP [dm6]	A	C	2.456e^-4	0.955	INTRON Pde6
3L	19323081	3L_19323081_SNP [dm3] 3L_19329981_SNP [dm6]	T	A	2.475e^-4	0.955	INTRON pip	TF binding site mE1_TFBS_HSA
3R	13644715	3R_13644715_SNP [dm3] 3R_17818993_SNP [dm6]	C	T	2.477e^-4	0.955	INTRON tinc
X	17269577	X_17269577_SNP [dm3] X_17375544_SNP [dm6]	A	T	2.488e^-4	0.955	INTERGENIC
X	11302043	X_11302043_SNP [dm3] X_11408010_SNP [dm6]	T	C	2.489e^-4	0.955	UTR_3_PRIME dlg1 DOWNSTREAM dlg1
3R	13161573	3R_13161573_SNP [dm3] 3R_17335851_SNP [dm6]	C	T	2.511e^-4	0.955	INTRON beat-IIa
2R	4912369	2R_4912369_SNP [dm3] 2R_9024864_SNP [dm6]	A	C	2.520e^-4	0.955	INTRON CG8170	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10751439	X_10751439_SNP [dm3] X_10857406_SNP [dm6]	C	G	2.526e^-4	0.955	UTR_5_PRIME sofe UPSTREAM CG2186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14925206	2R_14925206_SNP [dm3] 2R_19037701_SNP [dm6]	G	T	2.528e^-4	0.955	INTERGENIC
X	16947000	X_16947000_SNP [dm3] X_17052967_SNP [dm6]	T	C	2.551e^-4	0.955	INTRON CG45002
3R	27267286	3R_27267286_SNP [dm3] 3R_31441564_SNP [dm6]	G	A	2.556e^-4	0.955	INTRON Gprk2
2L	20422605	2L_20422605_SNP [dm3] 2L_20422605_SNP [dm6]	C	A	2.559e^-4	0.955	UTR_3_PRIME Arpc2 DOWNSTREAM snoRNA:Psi18S-525i & 3 others	TF binding site mE1_TFBS_kn
2R	14456857	2R_14456857_SNP [dm3] 2R_18569352_SNP [dm6]	T	A	2.559e^-4	0.955	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21707051	3R_21707051_SNP [dm3] 3R_25881329_SNP [dm6]	C	T	2.567e^-4	0.955	UTR_5_PRIME Tsp96F UPSTREAM SppL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12073843	2R_12073843_SNP [dm3] 2R_16186338_SNP [dm6]	G	T	2.591e^-4	0.955	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13861685	2R_13861685_SNP [dm3] 2R_17974180_SNP [dm6]	C	A	2.595e^-4	0.955	DOWNSTREAM dpr13 INTERGENIC
2L	2711750	2L_2711750_SNP [dm3] 2L_2711750_SNP [dm6]	A	C	2.600e^-4	0.955	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9662372	2R_9662372_SNP [dm3] 2R_13774867_SNP [dm6]	T	C	2.605e^-4	0.955	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo
X	21457546	X_21457546_SNP [dm3] X_21586519_SNP [dm6]	C	G	2.614e^-4	0.955	INTERGENIC
2L	4159247	2L_4159247_SNP [dm3] 2L_4159247_SNP [dm6]	G	C	2.615e^-4	0.955	INTERGENIC
3L	476587	3L_476587_SNP [dm3] 3L_476587_SNP [dm6]	G	A	2.618e^-4	0.955	INTRON klar
2R	13485698	2R_13485698_SNP [dm3] 2R_17598193_SNP [dm6]	G	T	2.623e^-4	0.955	DOWNSTREAM CG11423 & 1 other INTRON lack	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12830640	2R_12830640_SNP [dm3] 2R_16943135_SNP [dm6]	T	G	2.629e^-4	0.955	UTR_3_PRIME Pkc53E DOWNSTREAM Pkc53E	TF binding site mE1_TFBS_inv
2L	12229044	2L_12229044_SNP [dm3] 2L_12229044_SNP [dm6]	A	G	2.633e^-4	0.955	INTRON aret
2R	8898174	2R_8898174_SNP [dm3] 2R_13010669_SNP [dm6]	C	T	2.636e^-4	0.955	INTERGENIC
3L	17149782	3L_17149782_SNP [dm3] 3L_17156682_SNP [dm6]	G	A	2.638e^-4	0.955	INTRON Rbp6
2R	12073844	2R_12073844_SNP [dm3] 2R_16186339_SNP [dm6]	A	T	2.644e^-4	0.955	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6652736	2L_6652736_SNP [dm3] 2L_6652736_SNP [dm6]	C	A	2.660e^-4	0.955	INTRON Tango1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5718980	2L_5718980_SNP [dm3] 2L_5718980_SNP [dm6]	T	C	2.661e^-4	0.955	SYNONYMOUS_CODING CG11149 DOWNSTREAM CG34011	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3007072	3R_3007072_SNP [dm3] 3R_7181350_SNP [dm6]	T	C	2.664e^-4	0.955	INTRON sas	TF binding site mE1_TFBS_cad
X	2590247	X_2590247_SNP [dm3] X_2696214_SNP [dm6]	A	G	2.666e^-4	0.955	SYNONYMOUS_CODING CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19674031	2L_19674031_SNP [dm3] 2L_19674031_SNP [dm6]	C	A	2.668e^-4	0.955	INTRON Lar
2L	4051240	2L_4051240_SNP [dm3] 2L_4051240_SNP [dm6]	C	T	2.672e^-4	0.955	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4589048	3R_4589048_SNP [dm3] 3R_8763326_SNP [dm6]	T	G	2.684e^-4	0.955	INTRON CG11768 & 1 other
X	16579943	X_16579943_SNP [dm3] X_16685910_SNP [dm6]	G	A	2.685e^-4	0.955	SPLICE_SITE_REGION Sep4 SYNONYMOUS_CODING Sep4
2L	9891087	2L_9891087_SNP [dm3] 2L_9891087_SNP [dm6]	C	G	2.700e^-4	0.955	UPSTREAM CG34183 DOWNSTREAM FKBP59 & 1 other INTRON CG4537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	9891097	2L_9891097_SNP [dm3] 2L_9891097_SNP [dm6]	C	A	2.700e^-4	0.955	UPSTREAM CG34183 DOWNSTREAM FKBP59 & 1 other INTRON CG4537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	9891118	2L_9891118_SNP [dm3] 2L_9891118_SNP [dm6]	T	C	2.700e^-4	0.955	UPSTREAM CG34183 DOWNSTREAM FKBP59 & 1 other INTRON CG4537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	17981935	3R_17981935_SNP [dm3] 3R_22156213_SNP [dm6]	C	A	2.718e^-4	0.955	INTRON SKIP
2R	12111138	2R_12111138_SNP [dm3] 2R_16223633_SNP [dm6]	G	C	2.718e^-4	0.955	SYNONYMOUS_CODING CG15706 DOWNSTREAM CR43898	TF binding site mE1_TFBS_HSA
X	6535181	X_6535181_SNP [dm3] X_6641148_SNP [dm6]	A	T	2.727e^-4	0.955	INTRON pigs
3L	13958194	3L_13958194_SNP [dm3] 3L_13965094_SNP [dm6]	G	T	2.728e^-4	0.955	UPSTREAM ssp2 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2R	15934720	2R_15934720_SNP [dm3] 2R_20047215_SNP [dm6]	A	C	2.734e^-4	0.955	INTERGENIC
2R	14925224	2R_14925224_SNP [dm3] 2R_19037719_SNP [dm6]	G	T	2.742e^-4	0.955	INTERGENIC
2R	10016218	2R_10016218_SNP [dm3] 2R_14128713_SNP [dm6]	T	A	2.747e^-4	0.955	INTRON Prosap
2L	7000501	2L_7000501_SNP [dm3] 2L_7000501_SNP [dm6]	A	G	2.749e^-4	0.955	INTRON uif
2R	14925202	2R_14925202_SNP [dm3] 2R_19037697_SNP [dm6]	A	G	2.759e^-4	0.955	INTERGENIC
2L	9890842	2L_9890842_SNP [dm3] 2L_9890842_SNP [dm6]	A	T	2.765e^-4	0.955	UPSTREAM CG4537 & 1 other DOWNSTREAM FKBP59 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	9586207	2R_9586207_DEL [dm3] 2R_13698702_DEL [dm6]	GGCAG	TTA	2.767e^-4	0.955	INTRON fas
3R	24355118	3R_24355118_SNP [dm3] 3R_28529396_SNP [dm6]	A	G	2.779e^-4	0.955	SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8244534	3L_8244534_SNP [dm3] 3L_8251434_SNP [dm6]	A	C	2.785e^-4	0.955	INTRON Dscam4
3L	835702	3L_835702_DEL [dm3] 3L_835702_DEL [dm6]	CA	T	2.787e^-4	0.955	UTR_5_PRIME CG42554 DOWNSTREAM CG42553 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14925230	2R_14925230_SNP [dm3] 2R_19037725_SNP [dm6]	A	G	2.791e^-4	0.955	INTERGENIC
2R	12562885	2R_12562885_SNP [dm3] 2R_16675380_SNP [dm6]	C	T	2.806e^-4	0.955	INTRON CG30463
2R	6130610	2R_6130610_SNP [dm3] 2R_10243105_SNP [dm6]	T	A	2.807e^-4	0.955	INTRON Hdc	TF binding site mE1_TFBS_cad
3L	16342914	3L_16342914_SNP [dm3] 3L_16349814_SNP [dm6]	C	T	2.813e^-4	0.955	UPSTREAM tRNA:CR32357 INTRON CG4925
2L	20420594	2L_20420594_SNP [dm3] 2L_20420594_SNP [dm6]	G	C	2.830e^-4	0.955	SPLICE_SITE_REGION Arpc2 UPSTREAM snoRNA:Psi18S-640e & 2 others DOWNSTREAM snoRNA:Psi18S-640d & 2 others INTRON Arpc2
2L	5718646	2L_5718646_SNP [dm3] 2L_5718646_SNP [dm6]	A	T	2.833e^-4	0.955	NON_SYNONYMOUS_CODING CG11149 DOWNSTREAM CG34011 INTRON CG11149
3R	26868625	3R_26868625_SNP [dm3] 3R_31042903_SNP [dm6]	T	A	2.837e^-4	0.955	INTRON CanA1
X	6125954	X_6125954_SNP [dm3] X_6231921_SNP [dm6]	T	A	2.842e^-4	0.955	UTR_3_PRIME CG14446
2R	18442651	2R_18442651_SNP [dm3] 2R_22555146_SNP [dm6]	C	A	2.844e^-4	0.955	INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6608009	2L_6608009_SNP [dm3] 2L_6608009_SNP [dm6]	G	C	2.847e^-4	0.955	INTERGENIC
2L	19202601	2L_19202601_SNP [dm3] 2L_19202601_SNP [dm6]	T	C	2.852e^-4	0.955	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4563197	3R_4563197_SNP [dm3] 3R_8737475_SNP [dm6]	G	A	2.853e^-4	0.955	SYNONYMOUS_CODING CG9801	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10154093	2R_10154093_SNP [dm3] 2R_14266588_SNP [dm6]	G	C	2.854e^-4	0.955	INTRON CG8547
X	20023315	X_20023315_SNP [dm3] X_20129282_SNP [dm6]	C	A	2.870e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9890980	2L_9890980_SNP [dm3] 2L_9890980_SNP [dm6]	C	T	2.884e^-4	0.955	NON_SYNONYMOUS_CODING CG4537 UPSTREAM CG34183 DOWNSTREAM FKBP59 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	13222267	3L_13222267_SNP [dm3] 3L_13229167_SNP [dm6]	A	G	2.888e^-4	0.955	INTRON caps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
X	6641463	X_6641463_SNP [dm3] X_6747430_SNP [dm6]	T	G	2.890e^-4	0.955	UPSTREAM CG14439 EXON CR44964	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	6410991	2L_6410991_SNP [dm3] 2L_6410991_SNP [dm6]	C	T	2.890e^-4	0.955	START_GAINED CG42368 UTR_5_PRIME CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14925225	2R_14925225_SNP [dm3] 2R_19037720_SNP [dm6]	A	G	2.900e^-4	0.955	INTERGENIC
2R	6536316	2R_6536316_SNP [dm3] 2R_10648811_SNP [dm6]	C	A	2.905e^-4	0.955	UPSTREAM CG12934 DOWNSTREAM Elp2 INTERGENIC
2L	11617739	2L_11617739_SNP [dm3] 2L_11617739_SNP [dm6]	A	C	2.911e^-4	0.955	INTRON kek2
3R	13193792	3R_13193792_SNP [dm3] 3R_17368070_SNP [dm6]	T	C	2.932e^-4	0.955	INTERGENIC
2R	19460830	2R_19460830_SNP [dm3] 2R_23573307_SNP [dm6]	A	G	2.934e^-4	0.955	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7467170	3L_7467170_SNP [dm3] 3L_7474070_SNP [dm6]	A	C	2.934e^-4	0.955	INTERGENIC
X	1219925	X_1219925_SNP [dm3] X_1325892_SNP [dm6]	T	G	2.935e^-4	0.955	NON_SYNONYMOUS_CODING fs_1_N	TF binding site mE1_TFBS_chinmo
2R	14513021	2R_14513021_SNP [dm3] 2R_18625516_SNP [dm6]	C	T	2.954e^-4	0.955	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7748843	3L_7748843_SNP [dm3] 3L_7755743_SNP [dm6]	G	A	2.969e^-4	0.955	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
2L	20405790	2L_20405790_SNP [dm3] 2L_20405790_SNP [dm6]	G	A	2.971e^-4	0.955	INTRON CG10947
2L	6941442	2L_6941442_SNP [dm3] 2L_6941442_SNP [dm6]	T	C	2.974e^-4	0.955	INTRON CG18304	TF binding site BDTNP1_TFBS_dl
2R	13485791	2R_13485791_SNP [dm3] 2R_17598286_SNP [dm6]	T	A	2.976e^-4	0.955	DOWNSTREAM CG11423 & 1 other INTRON lack	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13961258	2L_13961258_SNP [dm3] 2L_13961258_SNP [dm6]	G	A	2.978e^-4	0.955	SYNONYMOUS_CODING NimA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4676347	2L_4676347_SNP [dm3] 2L_4676347_SNP [dm6]	G	C	2.993e^-4	0.955	INTERGENIC
2L	5863105	2L_5863105_SNP [dm3] 2L_5863105_SNP [dm6]	A	G	2.993e^-4	0.955	INTRON rau
2R	7220719	2R_7220719_SNP [dm3] 2R_11333214_SNP [dm6]	A	G	2.994e^-4	0.955	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10366617	3R_10366617_SNP [dm3] 3R_14540895_SNP [dm6]	G	A	2.995e^-4	0.955	INTRON Pde6
2L	12042656	2L_12042656_SNP [dm3] 2L_12042656_SNP [dm6]	C	T	2.996e^-4	0.955	SYNONYMOUS_CODING CG6785	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12042711	2L_12042711_SNP [dm3] 2L_12042711_SNP [dm6]	G	A	2.996e^-4	0.955	NON_SYNONYMOUS_CODING CG6785	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15540064	2R_15540064_SNP [dm3] 2R_19652559_SNP [dm6]	C	G	2.998e^-4	0.955	UPSTREAM CR44213 INTRON Ir56e EXON CR44212
3L	2280753	3L_2280753_SNP [dm3] 3L_2280753_SNP [dm6]	C	T	3.000e^-4	0.955	INTERGENIC
2R	10012115	2R_10012115_SNP [dm3] 2R_14124610_SNP [dm6]	G	A	3.004e^-4	0.955	INTRON Prosap
X	5576339	X_5576339_SNP [dm3] X_5682306_SNP [dm6]	A	T	3.005e^-4	0.955	UPSTREAM CR44958 & 1 other INTRON Gr5a	TF binding site mE1_TFBS_cad
2L	17735162	2L_17735162_SNP [dm3] 2L_17735162_SNP [dm6]	G	T	3.010e^-4	0.955	INTRON CadN	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5666981	2L_5666981_SNP [dm3] 2L_5666981_SNP [dm6]	C	T	3.016e^-4	0.955	INTRON Hsp60C
3R	1100208	3R_1100208_SNP [dm3] 3R_5274486_SNP [dm6]	C	T	3.021e^-4	0.955	INTRON mtd
3R	18324842	3R_18324842_INS [dm3] 3R_22499120_INS [dm6]	C	CC	3.030e^-4	0.955	INTRON Octbeta1R
2R	15392689	2R_15392689_SNP [dm3] 2R_19505184_SNP [dm6]	C	A	3.031e^-4	0.955	DOWNSTREAM CG11007 EXON CR44472	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10033065	2R_10033065_SNP [dm3] 2R_14145560_SNP [dm6]	C	T	3.032e^-4	0.955	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	20407658	2L_20407658_SNP [dm3] 2L_20407658_SNP [dm6]	A	G	3.032e^-4	0.955	INTRON CG10947
2L	15140640	2L_15140640_SNP [dm3] 2L_15140640_SNP [dm6]	A	T	3.036e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	14925214	2R_14925214_SNP [dm3] 2R_19037709_SNP [dm6]	A	G	3.037e^-4	0.955	INTERGENIC
3R	8148484	3R_8148484_SNP [dm3] 3R_12322762_SNP [dm6]	G	T	3.050e^-4	0.955	UPSTREAM CG10013 & 1 other INTERGENIC
2L	7843454	2L_7843454_SNP [dm3] 2L_7843454_SNP [dm6]	A	G	3.060e^-4	0.955	INTERGENIC
2L	5924771	2L_5924771_SNP [dm3] 2L_5924771_SNP [dm6]	C	G	3.062e^-4	0.955	DOWNSTREAM CR43926 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14236182	X_14236182_DEL [dm3] X_14342149_DEL [dm6]	TT	T	3.064e^-4	0.955	INTRON dpr8
2R	5401020	2R_5401020_SNP [dm3] 2R_9513515_SNP [dm6]	A	G	3.064e^-4	0.955	INTRON brp
3L	11577451	3L_11577451_SNP [dm3] 3L_11584351_SNP [dm6]	G	A	3.082e^-4	0.955	SYNONYMOUS_CODING rt UPSTREAM CG32086	TF binding site mE1_TFBS_cad
2L	931623	2L_931623_SNP [dm3] 2L_931623_SNP [dm6]	G	C	3.085e^-4	0.955	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2L	3668129	2L_3668129_SNP [dm3] 2L_3668129_SNP [dm6]	T	C	3.091e^-4	0.955	NON_SYNONYMOUS_CODING Sfp24Ba DOWNSTREAM CG42463 INTRON CG34340
3L	5082585	3L_5082585_SNP [dm3] 3L_5082585_SNP [dm6]	A	T	3.091e^-4	0.955	INTERGENIC
2R	15570085	2R_15570085_SNP [dm3] 2R_19682580_SNP [dm6]	A	C	3.095e^-4	0.955	UTR_3_PRIME CG34198 DOWNSTREAM CR44505	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6803786	2R_6803786_SNP [dm3] 2R_10916281_SNP [dm6]	C	A	3.104e^-4	0.955	INTERGENIC
2L	5046118	2L_5046118_SNP [dm3] 2L_5046118_SNP [dm6]	C	T	3.105e^-4	0.955	INTRON CG33995 & 2 others	TF binding site mE1_TFBS_cad
2L	5046120	2L_5046120_SNP [dm3] 2L_5046120_SNP [dm6]	C	T	3.105e^-4	0.955	INTRON CG33995 & 2 others	TF binding site mE1_TFBS_cad
X	13193642	X_13193642_SNP [dm3] X_13299609_SNP [dm6]	C	T	3.107e^-4	0.955	UTR_3_PRIME CG1622 INTRON CG1764
3L	12643982	3L_12643982_SNP [dm3] 3L_12650882_SNP [dm6]	T	C	3.113e^-4	0.955	INTRON CR43431	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	4877616	3L_4877616_SNP [dm3] 3L_4877616_SNP [dm6]	G	A	3.115e^-4	0.955	INTRON CG17150
2L	4881532	2L_4881532_SNP [dm3] 2L_4881532_SNP [dm6]	C	T	3.117e^-4	0.955	SYNONYMOUS_CODING Cf2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7100369	3L_7100369_INS [dm3] 3L_7107269_INS [dm6]	T	TTT	3.118e^-4	0.955	INTRON form3
3L	23465097	3L_23465097_SNP [dm3] 3L_23471997_SNP [dm6]	G	A	3.121e^-4	0.955	INTERGENIC	transposable element FlyBase
3L	7467161	3L_7467161_SNP [dm3] 3L_7474061_SNP [dm6]	A	G	3.121e^-4	0.955	INTERGENIC
2R	19690410	2R_19690410_SNP [dm3] 2R_23802887_SNP [dm6]	T	C	3.127e^-4	0.955	UTR_3_PRIME CG30177
2L	20426985	2L_20426985_SNP [dm3] 2L_20426985_SNP [dm6]	C	T	3.134e^-4	0.955	UTR_5_PRIME CG31688	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13225296	3L_13225296_SNP [dm3] 3L_13232196_SNP [dm6]	A	T	3.134e^-4	0.955	INTRON caps
X	8403059	X_8403059_SNP [dm3] X_8509026_SNP [dm6]	A	C	3.139e^-4	0.955	UPSTREAM CG33181 INTRON CG33181
2L	10550745	2L_10550745_SNP [dm3] 2L_10550745_SNP [dm6]	G	T	3.141e^-4	0.955	INTRON Trim9
X	16758302	X_16758302_SNP [dm3] X_16864269_SNP [dm6]	C	G	3.143e^-4	0.955	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3L	3768615	3L_3768615_SNP [dm3] 3L_3768615_SNP [dm6]	C	G	3.148e^-4	0.955	INTRON CG32264	TF binding site BDTNP1_TFBS_dl
2R	10013160	2R_10013160_SNP [dm3] 2R_14125655_SNP [dm6]	T	C	3.150e^-4	0.955	INTRON Prosap
X	7000302	X_7000302_SNP [dm3] X_7106269_SNP [dm6]	A	C	3.152e^-4	0.955	UTR_3_PRIME CG8300 DOWNSTREAM fz4
3L	12786789	3L_12786789_SNP [dm3] 3L_12793689_SNP [dm6]	A	G	3.164e^-4	0.955	INTRON Atg1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6358668	3L_6358668_SNP [dm3] 3L_6365568_SNP [dm6]	C	T	3.177e^-4	0.955	INTERGENIC
3L	9747888	3L_9747888_SNP [dm3] 3L_9754788_SNP [dm6]	C	G	3.186e^-4	0.955	INTRON CG42268
3L	10822897	3L_10822897_SNP [dm3] 3L_10829797_SNP [dm6]	T	A	3.192e^-4	0.955	INTERGENIC
2L	11079389	2L_11079389_SNP [dm3] 2L_11079389_SNP [dm6]	A	G	3.195e^-4	0.955	INTRON AstC
3R	25261852	3R_25261852_INS [dm3] 3R_29436130_INS [dm6]	T	TAAACTT	3.209e^-4	0.955	INTRON Ptp99A
X	11873324	X_11873324_SNP [dm3] X_11979291_SNP [dm6]	C	T	3.221e^-4	0.955	INTRON cac
2L	13961259	2L_13961259_SNP [dm3] 2L_13961259_SNP [dm6]	C	T	3.231e^-4	0.955	NON_SYNONYMOUS_CODING NimA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8703991	2L_8703991_SNP [dm3] 2L_8703991_SNP [dm6]	T	C	3.250e^-4	0.955	INTRON Hnf4 & 1 other
2R	19138971	2R_19138971_INS [dm3] 2R_23251448_INS [dm6]	G	GTTG	3.251e^-4	0.955	INTERGENIC
2L	7805566	2L_7805566_SNP [dm3] 2L_7805566_SNP [dm6]	T	A	3.271e^-4	0.955	SYNONYMOUS_CODING cdc14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1265903	2L_1265903_SNP [dm3] 2L_1265903_SNP [dm6]	C	G	3.272e^-4	0.955	INTRON robo3
X	21139932	X_21139932_INS [dm3] X_21268905_INS [dm6]	A	AA	3.279e^-4	0.955	INTRON CG32521
X	9267990	X_9267990_SNP [dm3] X_9373957_SNP [dm6]	T	C	3.279e^-4	0.955	INTRON mgl
3R	23581439	3R_23581439_DEL [dm3] 3R_27755717_DEL [dm6]	GATGGTGG	G	3.279e^-4	0.955	INTERGENIC
X	4525262	X_4525262_SNP [dm3] X_4631229_SNP [dm6]	C	T	3.282e^-4	0.955	UTR_3_PRIME CG12179 UPSTREAM CG12184 DOWNSTREAM CG12179	transposable element FlyBase
2R	14513532	2R_14513532_SNP [dm3] 2R_18626027_SNP [dm6]	T	C	3.286e^-4	0.955	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site mE1_TFBS_sens
3R	13129051	3R_13129051_SNP [dm3] 3R_17303329_SNP [dm6]	C	G	3.292e^-4	0.955	INTERGENIC
2R	6829393	2R_6829393_SNP [dm3] 2R_10941888_SNP [dm6]	T	C	3.309e^-4	0.955	UPSTREAM Spn47C INTERGENIC
2L	7378816	2L_7378816_SNP [dm3] 2L_7378816_SNP [dm6]	T	A	3.309e^-4	0.955	SYNONYMOUS_CODING ninaC
2R	8898310	2R_8898310_SNP [dm3] 2R_13010805_SNP [dm6]	A	T	3.314e^-4	0.955	INTERGENIC
2L	20417602	2L_20417602_SNP [dm3] 2L_20417602_SNP [dm6]	G	A	3.315e^-4	0.955	SYNONYMOUS_CODING Arpc2 UPSTREAM CG10949 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16997410	X_16997410_SNP [dm3] X_17103377_SNP [dm6]	G	A	3.318e^-4	0.955	SYNONYMOUS_CODING CG4991
3L	8768407	3L_8768407_SNP [dm3] 3L_8775307_SNP [dm6]	G	A	3.324e^-4	0.955	INTRON Fhos
2R	19461251	2R_19461251_SNP [dm3] 2R_23573728_SNP [dm6]	C	G	3.326e^-4	0.955	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18556557	2R_18556557_DEL [dm3] 2R_22669052_DEL [dm6]	TTATTCAGT	T	3.327e^-4	0.955	UPSTREAM CG13516 DOWNSTREAM CG30269 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21710536	3R_21710536_SNP [dm3] 3R_25884814_SNP [dm6]	G	A	3.328e^-4	0.955	INTRON SppL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19390165	2R_19390165_SNP [dm3] 2R_23502642_SNP [dm6]	C	G	3.337e^-4	0.955	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14513552	2R_14513552_SNP [dm3] 2R_18626047_SNP [dm6]	A	C	3.342e^-4	0.955	SYNONYMOUS_CODING Sec6	TF binding site mE1_TFBS_sens
3R	2627831	3R_2627831_SNP [dm3] 3R_6802109_SNP [dm6]	G	A	3.343e^-4	0.955	UTR_3_PRIME Dfd	TF binding site BDTNP1_TFBS_dl
3R	10358501	3R_10358501_SNP [dm3] 3R_14532779_SNP [dm6]	A	T	3.356e^-4	0.955	INTRON Pde6
2R	6110949	2R_6110949_INS [dm3] 2R_10223444_INS [dm6]	G	GG	3.358e^-4	0.955	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
2R	9914255	2R_9914255_SNP [dm3] 2R_14026750_SNP [dm6]	A	T	3.364e^-4	0.955	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	18572580	2R_18572580_SNP [dm3] 2R_22685075_SNP [dm6]	G	A	3.372e^-4	0.955	UTR_3_PRIME ppa DOWNSTREAM ppa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14676216	2R_14676216_SNP [dm3] 2R_18788711_SNP [dm6]	G	T	3.387e^-4	0.955	INTRON CG15080
3R	9703079	3R_9703079_SNP [dm3] 3R_13877357_SNP [dm6]	G	A	3.404e^-4	0.955	UPSTREAM E5 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15334900	2L_15334900_SNP [dm3] 2L_15334900_SNP [dm6]	G	A	3.412e^-4	0.955	SYNONYMOUS_CODING esg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	15031061	2L_15031061_SNP [dm3] 2L_15031061_SNP [dm6]	C	A	3.430e^-4	0.955	NON_SYNONYMOUS_CODING CG31832 INTRON GABA-B-R1
2L	9222785	2L_9222785_SNP [dm3] 2L_9222785_SNP [dm6]	C	G	3.436e^-4	0.955	INTRON tai
2L	10840020	2L_10840020_SNP [dm3] 2L_10840020_SNP [dm6]	G	A	3.442e^-4	0.955	DOWNSTREAM mir-4987 INTRON CG6700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	20406775	2L_20406775_SNP [dm3] 2L_20406775_SNP [dm6]	C	T	3.451e^-4	0.955	INTRON CG10947
3R	8138927	3R_8138927_SNP [dm3] 3R_12313205_SNP [dm6]	T	G	3.452e^-4	0.955	DOWNSTREAM CG4066 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6017502	2L_6017502_SNP [dm3] 2L_6017502_SNP [dm6]	C	T	3.454e^-4	0.955	INTRON H2.0
2R	16364638	2R_16364638_SNP [dm3] 2R_20477133_SNP [dm6]	A	C	3.465e^-4	0.955	INTRON CG12484
3L	4242128	3L_4242128_SNP [dm3] 3L_4242128_SNP [dm6]	G	T	3.482e^-4	0.955	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6126791	X_6126791_INS [dm3] X_6232758_INS [dm6]	T	TGCC	3.494e^-4	0.955	UTR_3_PRIME CG14446
X	10751624	X_10751624_SNP [dm3] X_10857591_SNP [dm6]	G	A	3.495e^-4	0.955	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	18793740	2L_18793740_SNP [dm3] 2L_18793740_SNP [dm6]	G	A	3.496e^-4	0.955	UPSTREAM ham INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8662126	3L_8662126_INS [dm3] 3L_8669026_INS [dm6]	C	CT	3.497e^-4	0.955	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10056195	3R_10056195_SNP [dm3] 3R_14230473_SNP [dm6]	T	G	3.499e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18814290	2L_18814290_SNP [dm3] 2L_18814290_SNP [dm6]	C	T	3.508e^-4	0.955	DOWNSTREAM CG17325 & 1 other INTERGENIC
2R	12145078	2R_12145078_INS [dm3] 2R_16257573_INS [dm6]	A	AAACCCCCAAC...	3.510e^-4	0.955	INTRON CngA
2R	7596387	2R_7596387_SNP [dm3] 2R_11708882_SNP [dm6]	C	A	3.527e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14024155	3R_14024155_SNP [dm3] 3R_18198433_SNP [dm6]	T	C	3.538e^-4	0.955	INTRON Ssdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16689249	3L_16689249_SNP [dm3] 3L_16696149_SNP [dm6]	C	A	3.540e^-4	0.955	INTRON CR45179 & 2 others
3R	17974090	3R_17974090_SNP [dm3] 3R_22148368_SNP [dm6]	C	T	3.547e^-4	0.955	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	13862874	2R_13862874_SNP [dm3] 2R_17975369_SNP [dm6]	T	A	3.548e^-4	0.955	UTR_3_PRIME dpr13
2R	10021718	2R_10021718_SNP [dm3] 2R_14134213_SNP [dm6]	G	A	3.550e^-4	0.955	INTRON Prosap
2R	18907642	2R_18907642_SNP [dm3] 2R_23020119_SNP [dm6]	G	A	3.555e^-4	0.955	INTRON twi & 1 other
X	14041350	X_14041350_SNP [dm3] X_14147317_SNP [dm6]	A	C	3.564e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14818959	3R_14818959_SNP [dm3] 3R_18993237_SNP [dm6]	G	A	3.567e^-4	0.955	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	18803180	2L_18803180_SNP [dm3] 2L_18803180_SNP [dm6]	T	A	3.569e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8790314	2L_8790314_SNP [dm3] 2L_8790314_SNP [dm6]	C	G	3.570e^-4	0.955	INTERGENIC
2R	18378949	2R_18378949_SNP [dm3] 2R_22491444_SNP [dm6]	C	T	3.578e^-4	0.955	UPSTREAM CG4610 INTRON CG4554	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	1221320	X_1221320_SNP [dm3] X_1327287_SNP [dm6]	G	A	3.590e^-4	0.955	INTRON fs_1_N
2L	1932873	2L_1932873_INS [dm3] 2L_1932873_INS [dm6]	C	CCATTTGCAAGCAC...	3.593e^-4	0.955	INTRON CG7337
2R	19414287	2R_19414287_SNP [dm3] 2R_23526764_SNP [dm6]	C	G	3.602e^-4	0.955	INTRON mi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16342851	3L_16342851_SNP [dm3] 3L_16349751_SNP [dm6]	G	A	3.624e^-4	0.955	SYNONYMOUS_CODING CG4925 UPSTREAM tRNA:CR32357 DOWNSTREAM mRpS34
3R	13645326	3R_13645326_SNP [dm3] 3R_17819604_SNP [dm6]	C	A	3.624e^-4	0.955	INTRON tinc
2R	10060129	2R_10060129_SNP [dm3] 2R_14172624_SNP [dm6]	A	G	3.636e^-4	0.955	NON_SYNONYMOUS_CODING CG8331 DOWNSTREAM mRpS16	TF binding site mE1_TFBS_cad
3R	24355091	3R_24355091_SNP [dm3] 3R_28529369_SNP [dm6]	G	T	3.637e^-4	0.955	SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2763809	2L_2763809_DEL [dm3] 2L_2763809_DEL [dm6]	AGA	A	3.640e^-4	0.955	UTR_3_PRIME Trn-SR & 1 other DOWNSTREAM CG3077 & 1 other
3L	17149989	3L_17149989_SNP [dm3] 3L_17156889_SNP [dm6]	T	C	3.643e^-4	0.955	INTRON Rbp6
3R	25617567	3R_25617567_SNP [dm3] 3R_29791845_SNP [dm6]	G	T	3.649e^-4	0.955	SYNONYMOUS_CODING kay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17174590	3L_17174590_SNP [dm3] 3L_17181490_SNP [dm6]	C	T	3.654e^-4	0.955	INTRON Rbp6
2L	20418277	2L_20418277_SNP [dm3] 2L_20418277_SNP [dm6]	A	G	3.658e^-4	0.955	UPSTREAM snoRNA:Psi18S-525a & 5 others INTRON Arpc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11577465	3L_11577465_SNP [dm3] 3L_11584365_SNP [dm6]	A	G	3.665e^-4	0.955	SYNONYMOUS_CODING rt UPSTREAM CG32086	TF binding site mE1_TFBS_cad
2R	19390097	2R_19390097_SNP [dm3] 2R_23502574_SNP [dm6]	A	G	3.667e^-4	0.955	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22776141	3R_22776141_SNP [dm3] 3R_26950419_SNP [dm6]	T	A	3.670e^-4	0.955	UTR_3_PRIME CG6330 DOWNSTREAM CG18472	TF binding site mE1_TFBS_cad
2L	9358957	2L_9358957_SNP [dm3] 2L_9358957_SNP [dm6]	C	T	3.673e^-4	0.955	INTERGENIC
3R	13418023	3R_13418023_SNP [dm3] 3R_17592301_SNP [dm6]	A	G	3.677e^-4	0.955	INTERGENIC
2L	3189040	2L_3189040_SNP [dm3] 2L_3189040_SNP [dm6]	A	C	3.677e^-4	0.955	INTRON CG34393
2L	19688051	2L_19688051_SNP [dm3] 2L_19688051_SNP [dm6]	A	G	3.681e^-4	0.955	INTRON Lar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1592790	3R_1592790_SNP [dm3] 3R_5767068_SNP [dm6]	A	C	3.687e^-4	0.955	INTRON CG2082	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16733507	2R_16733507_SNP [dm3] 2R_20846002_SNP [dm6]	T	C	3.692e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18572942	2R_18572942_SNP [dm3] 2R_22685437_SNP [dm6]	T	C	3.700e^-4	0.955	UTR_3_PRIME ppa DOWNSTREAM ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	9914264	2R_9914264_SNP [dm3] 2R_14026759_SNP [dm6]	A	G	3.708e^-4	0.955	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	7013645	2L_7013645_SNP [dm3] 2L_7013645_SNP [dm6]	A	T	3.708e^-4	0.955	DOWNSTREAM CG43321 & 1 other INTRON CG43322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Ubx
3R	22741222	3R_22741222_SNP [dm3] 3R_26915500_SNP [dm6]	A	G	3.712e^-4	0.955	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17956177	3R_17956177_SNP [dm3] 3R_22130455_SNP [dm6]	T	C	3.721e^-4	0.955	SPLICE_SITE_REGION CG42390 INTRON CG42390
2L	5279698	2L_5279698_SNP [dm3] 2L_5279698_SNP [dm6]	G	A	3.722e^-4	0.955	SYNONYMOUS_CODING Bub1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19144367	2L_19144367_SNP [dm3] 2L_19144367_SNP [dm6]	T	A	3.723e^-4	0.955	INTRON brat
2R	15227808	2R_15227808_SNP [dm3] 2R_19340303_SNP [dm6]	T	C	3.727e^-4	0.955	INTRON Rgk1
X	20824995	X_20824995_INS [dm3] X_20953968_INS [dm6]	A	AAAAAA	3.731e^-4	0.955	INTERGENIC
2R	1357501	2R_1357501_SNP [dm3] 2R_5469996_SNP [dm6]	C	A	3.733e^-4	0.955	INTRON CG30440	transposable element FlyBase
3R	18905420	3R_18905420_SNP [dm3] 3R_23079698_SNP [dm6]	A	G	3.738e^-4	0.955	INTRON CG13830
3L	6757158	3L_6757158_SNP [dm3] 3L_6764058_SNP [dm6]	A	G	3.741e^-4	0.955	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3L	7976018	3L_7976018_SNP [dm3] 3L_7982918_SNP [dm6]	A	T	3.746e^-4	0.955	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8151838	3R_8151838_SNP [dm3] 3R_12326116_SNP [dm6]	C	T	3.747e^-4	0.955	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	2169180	X_2169180_SNP [dm3] X_2275147_SNP [dm6]	C	G	3.748e^-4	0.955	UPSTREAM CG2918 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4994605	2L_4994605_SNP [dm3] 2L_4994605_SNP [dm6]	A	C	3.748e^-4	0.955	SYNONYMOUS_CODING Rtnl1
X	17269599	X_17269599_SNP [dm3] X_17375566_SNP [dm6]	A	G	3.755e^-4	0.955	INTERGENIC
3L	8276362	3L_8276362_SNP [dm3] 3L_8283262_SNP [dm6]	A	G	3.782e^-4	0.955	DOWNSTREAM Dscam4 INTRON cert
2L	6620139	2L_6620139_SNP [dm3] 2L_6620139_SNP [dm6]	C	A	3.783e^-4	0.955	DOWNSTREAM CR44913 INTRON CG11320
3L	6388942	3L_6388942_SNP [dm3] 3L_6395842_SNP [dm6]	G	A	3.788e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17956194	3R_17956194_SNP [dm3] 3R_22130472_SNP [dm6]	T	G	3.790e^-4	0.955	INTRON CG42390
3L	16338592	3L_16338592_SNP [dm3] 3L_16345492_SNP [dm6]	C	T	3.806e^-4	0.955	UPSTREAM CG33257 DOWNSTREAM CG4998 INTERGENIC
2R	6048596	2R_6048596_SNP [dm3] 2R_10161091_SNP [dm6]	A	C	3.823e^-4	0.955	INTRON KCNQ	TF binding site mE1_TFBS_HSA
2R	12073845	2R_12073845_DEL [dm3] 2R_16186340_DEL [dm6]	CGC	C	3.825e^-4	0.955	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1411727	2L_1411727_SNP [dm3] 2L_1411727_SNP [dm6]	G	A	3.831e^-4	0.955	INTRON lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
X	10153749	X_10153749_DEL [dm3] X_10259716_DEL [dm6]	ACT	A	3.847e^-4	0.955	INTRON CR43959 & 1 other
2R	3732350	2R_3732350_SNP [dm3] 2R_7844845_SNP [dm6]	A	T	3.847e^-4	0.955	INTRON Dgk
2R	10013737	2R_10013737_SNP [dm3] 2R_14126232_SNP [dm6]	A	T	3.848e^-4	0.955	INTRON Prosap
2R	9914259	2R_9914259_SNP [dm3] 2R_14026754_SNP [dm6]	A	T	3.849e^-4	0.955	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	4009382	2L_4009382_SNP [dm3] 2L_4009382_SNP [dm6]	A	G	3.851e^-4	0.955	DOWNSTREAM CG43774 INTERGENIC
2R	8515514	2R_8515514_SNP [dm3] 2R_12628009_SNP [dm6]	A	C	3.853e^-4	0.955	SYNONYMOUS_CODING CG17760 DOWNSTREAM muskelin
X	21428296	X_21428296_SNP [dm3] X_21557269_SNP [dm6]	G	A	3.859e^-4	0.955	INTERGENIC
2R	9914224	2R_9914224_SNP [dm3] 2R_14026719_SNP [dm6]	A	C	3.859e^-4	0.955	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	11173194	3L_11173194_SNP [dm3] 3L_11180094_SNP [dm6]	A	G	3.864e^-4	0.955	INTRON GlcAT-P
3L	12287447	3L_12287447_SNP [dm3] 3L_12294347_SNP [dm6]	A	G	3.865e^-4	0.955	INTRON CG4328
3R	13164060	3R_13164060_SNP [dm3] 3R_17338338_SNP [dm6]	G	T	3.870e^-4	0.955	INTRON beat-IIa
2L	19679759	2L_19679759_SNP [dm3] 2L_19679759_SNP [dm6]	G	A	3.875e^-4	0.955	INTRON Lar
3R	10250897	3R_10250897_SNP [dm3] 3R_14425175_SNP [dm6]	G	T	3.875e^-4	0.955	INTRON cv-c
X	19931402	X_19931402_SNP [dm3] X_20037369_SNP [dm6]	G	A	3.876e^-4	0.955	INTRON Dop2R
3L	1600139	3L_1600139_SNP [dm3] 3L_1600139_SNP [dm6]	G	A	3.877e^-4	0.955	UTR_3_PRIME CG13917 DOWNSTREAM CG12104
3R	26320692	3R_26320692_SNP [dm3] 3R_30494970_SNP [dm6]	C	G	3.885e^-4	0.955	INTRON PH4alphaMP	TF binding site mE1_TFBS_inv
2R	14513549	2R_14513549_SNP [dm3] 2R_18626044_SNP [dm6]	C	T	3.893e^-4	0.955	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site mE1_TFBS_sens
2L	3438723	2L_3438723_SNP [dm3] 2L_3438723_SNP [dm6]	G	T	3.894e^-4	0.955	INTERGENIC
3R	11918675	3R_11918675_SNP [dm3] 3R_16092953_SNP [dm6]	A	C	3.898e^-4	0.955	SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8140012	2L_8140012_SNP [dm3] 2L_8140012_SNP [dm6]	T	A	3.901e^-4	0.955	SYNONYMOUS_CODING CG8552 START_GAINED CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2R	9134571	2R_9134571_SNP [dm3] 2R_13247066_SNP [dm6]	C	T	3.908e^-4	0.955	SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9908150	2L_9908150_SNP [dm3] 2L_9908150_SNP [dm6]	A	G	3.910e^-4	0.955	DOWNSTREAM Etl1 INTRON CG13124	TF binding site BDTNP1_TFBS_dl
2R	12109326	2R_12109326_SNP [dm3] 2R_16221821_SNP [dm6]	A	T	3.912e^-4	0.955	UPSTREAM mrj DOWNSTREAM CG7798 EXON CR43898	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10837540	3L_10837540_DEL [dm3] 3L_10844440_DEL [dm6]	TCAAGTGTTTG...	T	3.913e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12562975	2R_12562975_DEL [dm3] 2R_16675470_DEL [dm6]	TCTGTGTGC	A	3.927e^-4	0.955	INTRON CG30463
2R	10018139	2R_10018139_SNP [dm3] 2R_14130634_SNP [dm6]	T	A	3.937e^-4	0.955	INTRON Prosap
3R	10056203	3R_10056203_INS [dm3] 3R_14230481_INS [dm6]	A	AA	3.938e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5496873	2L_5496873_SNP [dm3] 2L_5496873_SNP [dm6]	G	A	3.950e^-4	0.955	INTERGENIC
2R	13485704	2R_13485704_SNP [dm3] 2R_17598199_SNP [dm6]	A	T	3.954e^-4	0.955	DOWNSTREAM CG11423 & 1 other INTRON lack	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13441664	3R_13441664_SNP [dm3] 3R_17615942_SNP [dm6]	G	A	3.957e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	8151742	3R_8151742_SNP [dm3] 3R_12326020_SNP [dm6]	G	A	3.957e^-4	0.955	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	19282266	X_19282266_INS [dm3] X_19388233_INS [dm6]	T	TACAATACT	3.960e^-4	0.955	INTRON kek5
2L	8790262	2L_8790262_SNP [dm3] 2L_8790262_SNP [dm6]	C	A	3.969e^-4	0.955	INTERGENIC
3L	10825027	3L_10825027_SNP [dm3] 3L_10831927_SNP [dm6]	A	G	3.972e^-4	0.955	INTERGENIC
3R	26866632	3R_26866632_SNP [dm3] 3R_31040910_SNP [dm6]	A	G	3.978e^-4	0.955	INTRON CanA1
3L	9628506	3L_9628506_SNP [dm3] 3L_9635406_SNP [dm6]	T	C	3.978e^-4	0.955	INTRON fry
2R	10020124	2R_10020124_SNP [dm3] 2R_14132619_SNP [dm6]	C	T	3.979e^-4	0.955	INTRON Prosap	TF binding site mE1_TFBS_inv
3L	501056	3L_501056_SNP [dm3] 3L_501056_SNP [dm6]	A	C	3.983e^-4	0.955	UPSTREAM CG34267 INTRON klar & 1 other
3R	10445442	3R_10445442_SNP [dm3] 3R_14619720_SNP [dm6]	T	C	3.985e^-4	0.955	UTR_3_PRIME put DOWNSTREAM CG14853 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8620599	2R_8620599_SNP [dm3] 2R_12733094_SNP [dm6]	G	A	3.985e^-4	0.955	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16319039	3L_16319039_SNP [dm3] 3L_16325939_SNP [dm6]	C	A	3.988e^-4	0.955	UTR_5_PRIME CG13040 UPSTREAM CG13040 DOWNSTREAM CG13039
3L	2346288	3L_2346288_SNP [dm3] 3L_2346288_SNP [dm6]	C	T	3.988e^-4	0.955	DOWNSTREAM MsR1 INTERGENIC
2L	11005890	2L_11005890_SNP [dm3] 2L_11005890_SNP [dm6]	T	C	3.999e^-4	0.955	INTRON Nup154	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9527698	X_9527698_SNP [dm3] X_9633665_SNP [dm6]	T	A	4.015e^-4	0.955	INTRON l_1_G0232
2R	14884754	2R_14884754_SNP [dm3] 2R_18997249_SNP [dm6]	C	A	4.020e^-4	0.955	NON_SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7748848	3L_7748848_SNP [dm3] 3L_7755748_SNP [dm6]	G	A	4.021e^-4	0.955	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
2L	8126330	2L_8126330_SNP [dm3] 2L_8126330_SNP [dm6]	C	T	4.022e^-4	0.955	NON_SYNONYMOUS_CODING CG12375 UPSTREAM CG8668 DOWNSTREAM CG8673	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	16267816	3L_16267816_SNP [dm3] 3L_16274716_SNP [dm6]	A	T	4.022e^-4	0.955	INTERGENIC
3R	26490897	3R_26490897_SNP [dm3] 3R_30665175_SNP [dm6]	C	A	4.022e^-4	0.955	INTRON CR45191
2R	9792734	2R_9792734_SNP [dm3] 2R_13905229_SNP [dm6]	A	G	4.051e^-4	0.955	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2L	7013549	2L_7013549_SNP [dm3] 2L_7013549_SNP [dm6]	C	G	4.070e^-4	0.955	SYNONYMOUS_CODING CG43322 DOWNSTREAM CG43321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	501068	3L_501068_SNP [dm3] 3L_501068_SNP [dm6]	A	G	4.072e^-4	0.955	UPSTREAM CG34267 INTRON klar & 1 other
3L	16319301	3L_16319301_SNP [dm3] 3L_16326201_SNP [dm6]	C	T	4.072e^-4	0.955	UTR_5_PRIME CG13040 UTR_3_PRIME CG13039 UPSTREAM CG13040
2L	18803181	2L_18803181_SNP [dm3] 2L_18803181_SNP [dm6]	T	C	4.075e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6451852	X_6451852_SNP [dm3] X_6557819_SNP [dm6]	G	C	4.077e^-4	0.955	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	4157901	2L_4157901_SNP [dm3] 2L_4157901_SNP [dm6]	C	T	4.078e^-4	0.955	INTERGENIC
3L	16318753	3L_16318753_SNP [dm3] 3L_16325653_SNP [dm6]	T	A	4.078e^-4	0.955	SYNONYMOUS_CODING CG13040 DOWNSTREAM CG13039
2R	10003302	2R_10003302_SNP [dm3] 2R_14115797_SNP [dm6]	A	G	4.080e^-4	0.955	INTRON Prosap
2R	17649028	2R_17649028_SNP [dm3] 2R_21761523_SNP [dm6]	A	C	4.081e^-4	0.955	INTERGENIC
2R	3443030	2R_3443030_SNP [dm3] 2R_7555525_SNP [dm6]	T	G	4.086e^-4	0.955	INTRON Corin
2L	7378789	2L_7378789_SNP [dm3] 2L_7378789_SNP [dm6]	C	T	4.088e^-4	0.955	SYNONYMOUS_CODING ninaC
3R	15280332	3R_15280332_SNP [dm3] 3R_19454610_SNP [dm6]	A	T	4.089e^-4	0.955	INTRON CG31221
3R	25261849	3R_25261849_SNP [dm3] 3R_29436127_SNP [dm6]	T	C	4.096e^-4	0.955	INTRON Ptp99A
2R	18905184	2R_18905184_SNP [dm3] 2R_23017661_SNP [dm6]	G	A	4.099e^-4	0.955	INTRON twi & 1 other
2L	4994486	2L_4994486_SNP [dm3] 2L_4994486_SNP [dm6]	T	C	4.102e^-4	0.955	INTRON Rtnl1
X	21888123	X_21888123_SNP [dm3] X_22486287_SNP [dm6]	T	C	4.106e^-4	0.955	UPSTREAM l_1_G0196 DOWNSTREAM Cp110 INTRON Cp110	transposable element FlyBase
3L	1595901	3L_1595901_SNP [dm3] 3L_1595901_SNP [dm6]	G	A	4.113e^-4	0.955	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18809561	2L_18809561_SNP [dm3] 2L_18809561_SNP [dm6]	C	T	4.113e^-4	0.955	UTR_3_PRIME CG10570 & 1 other DOWNSTREAM CG10570 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21457416	X_21457416_SNP [dm3] X_21586389_SNP [dm6]	A	G	4.120e^-4	0.955	INTERGENIC
3R	17064701	3R_17064701_SNP [dm3] 3R_21238979_SNP [dm6]	T	C	4.124e^-4	0.955	INTERGENIC	regulatory region REDfly_CRMs
3L	14330296	3L_14330296_SNP [dm3] 3L_14337196_SNP [dm6]	A	C	4.125e^-4	0.955	INTRON fz
2R	15411935	2R_15411935_DEL [dm3] 2R_19524430_DEL [dm6]	AA	A	4.127e^-4	0.955	UTR_3_PRIME sm
3R	17697430	3R_17697430_INS [dm3] 3R_21871708_INS [dm6]	A	AA	4.139e^-4	0.955	UTR_5_PRIME CG31431 INTRON CG31431	TF binding site mE1_TFBS_cad
2R	19460824	2R_19460824_SNP [dm3] 2R_23573301_SNP [dm6]	T	G	4.139e^-4	0.955	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4599852	3R_4599852_SNP [dm3] 3R_8774130_SNP [dm6]	C	G	4.144e^-4	0.955	DOWNSTREAM Pif1B & 2 others INTERGENIC
2R	5392413	2R_5392413_SNP [dm3] 2R_9504908_SNP [dm6]	G	A	4.155e^-4	0.955	INTRON brp
X	16579981	X_16579981_SNP [dm3] X_16685948_SNP [dm6]	T	G	4.175e^-4	0.955	INTRON Sep4
3L	8903049	3L_8903049_SNP [dm3] 3L_8909949_SNP [dm6]	A	T	4.175e^-4	0.955	NON_SYNONYMOUS_CODING mfr UTR_5_PRIME mfr
X	2591012	X_2591012_SNP [dm3] X_2696979_SNP [dm6]	A	G	4.181e^-4	0.955	SYNONYMOUS_CODING CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14253065	X_14253065_SNP [dm3] X_14359032_SNP [dm6]	C	T	4.186e^-4	0.955	INTRON dpr8
2R	4283252	2R_4283252_SNP [dm3] 2R_8395747_SNP [dm6]	G	T	4.186e^-4	0.955	UTR_3_PRIME pdm3 DOWNSTREAM CG2121
2R	15535232	2R_15535232_SNP [dm3] 2R_19647727_SNP [dm6]	G	C	4.190e^-4	0.955	UPSTREAM CG15905 INTERGENIC	TF binding site mE1_TFBS_cad
2L	11005898	2L_11005898_SNP [dm3] 2L_11005898_SNP [dm6]	T	A	4.190e^-4	0.955	INTRON Nup154	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10025658	2R_10025658_SNP [dm3] 2R_14138153_SNP [dm6]	G	C	4.192e^-4	0.955	INTRON Prosap
3L	4242326	3L_4242326_SNP [dm3] 3L_4242326_SNP [dm6]	A	C	4.203e^-4	0.955	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	17258461	3L_17258461_SNP [dm3] 3L_17265361_SNP [dm6]	G	A	4.203e^-4	0.955	DOWNSTREAM CG13723 INTERGENIC
2L	670828	2L_670828_SNP [dm3] 2L_670828_SNP [dm6]	G	A	4.204e^-4	0.955	INTRON ds
2L	15031000	2L_15031000_SNP [dm3] 2L_15031000_SNP [dm6]	A	C	4.205e^-4	0.955	NON_SYNONYMOUS_CODING CG31832 INTRON GABA-B-R1
3R	17981259	3R_17981259_SNP [dm3] 3R_22155537_SNP [dm6]	A	T	4.214e^-4	0.955	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5276771	2L_5276771_SNP [dm3] 2L_5276771_SNP [dm6]	G	A	4.214e^-4	0.955	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14134628	3L_14134628_SNP [dm3] 3L_14141528_SNP [dm6]	C	T	4.218e^-4	0.955	INTERGENIC	regulatory region REDfly_CRMs
2L	5718622	2L_5718622_SNP [dm3] 2L_5718622_SNP [dm6]	G	A	4.219e^-4	0.955	STOP_GAINED CG11149 DOWNSTREAM CG34011 INTRON CG11149
X	14654576	X_14654576_SNP [dm3] X_14760543_SNP [dm6]	C	A	4.229e^-4	0.955	INTRON CG15890
2L	3438752	2L_3438752_SNP [dm3] 2L_3438752_SNP [dm6]	A	G	4.229e^-4	0.955	INTERGENIC
3L	10835523	3L_10835523_SNP [dm3] 3L_10842423_SNP [dm6]	C	A	4.232e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	7586016	2R_7586016_SNP [dm3] 2R_11698511_SNP [dm6]	G	T	4.236e^-4	0.955	DOWNSTREAM CG13197 & 1 other INTERGENIC
2R	14456859	2R_14456859_SNP [dm3] 2R_18569354_SNP [dm6]	C	T	4.243e^-4	0.955	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25264399	3R_25264399_SNP [dm3] 3R_29438677_SNP [dm6]	T	G	4.245e^-4	0.955	INTRON Ptp99A
2L	1850588	2L_1850588_INS [dm3] 2L_1850588_INS [dm6]	A	ACTGCTTAGTTAACTCTATA...	4.248e^-4	0.955	INTRON wry
2L	5276762	2L_5276762_SNP [dm3] 2L_5276762_SNP [dm6]	G	A	4.251e^-4	0.955	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15145961	3R_15145961_SNP [dm3] 3R_19320239_SNP [dm6]	G	A	4.256e^-4	0.955	INTRON Dl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6536376	2L_6536376_SNP [dm3] 2L_6536376_SNP [dm6]	A	T	4.256e^-4	0.955	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7843462	2L_7843462_SNP [dm3] 2L_7843462_SNP [dm6]	A	C	4.257e^-4	0.955	INTERGENIC
2R	15049181	2R_15049181_SNP [dm3] 2R_19161676_SNP [dm6]	T	C	4.267e^-4	0.955	SYNONYMOUS_CODING ena
3R	10034934	3R_10034934_SNP [dm3] 3R_14209212_SNP [dm6]	T	A	4.271e^-4	0.955	INTRON Dop1R1
X	4859846	X_4859846_SNP [dm3] X_4965813_SNP [dm6]	A	C	4.274e^-4	0.955	INTRON CR44833	regulatory region REDfly_CRMs
X	14701035	X_14701035_SNP [dm3] X_14807002_SNP [dm6]	C	T	4.274e^-4	0.955	INTRON rut
3L	7177636	3L_7177636_SNP [dm3] 3L_7184536_SNP [dm6]	C	G	4.277e^-4	0.955	INTRON Dscam2
X	8959577	X_8959577_SNP [dm3] X_9065544_SNP [dm6]	A	T	4.284e^-4	0.955	INTRON CG15365
3R	13197670	3R_13197670_SNP [dm3] 3R_17371948_SNP [dm6]	G	T	4.289e^-4	0.955	UPSTREAM CR44256 INTERGENIC
3R	25202118	3R_25202118_SNP [dm3] 3R_29376396_SNP [dm6]	C	T	4.290e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4053394	3L_4053394_SNP [dm3] 3L_4053394_SNP [dm6]	C	A	4.291e^-4	0.955	INTRON CG1136
3R	7877976	3R_7877976_SNP [dm3] 3R_12052254_SNP [dm6]	A	C	4.299e^-4	0.955	INTERGENIC
2R	3166469	2R_3166469_SNP [dm3] 2R_7278964_SNP [dm6]	C	A	4.304e^-4	0.955	NON_SYNONYMOUS_CODING Incenp UPSTREAM Br140	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5335187	2R_5335187_SNP [dm3] 2R_9447682_SNP [dm6]	T	C	4.305e^-4	0.955	INTRON Camta	TF binding site mE1_TFBS_HSA
2R	12562559	2R_12562559_SNP [dm3] 2R_16675054_SNP [dm6]	G	A	4.314e^-4	0.955	INTRON CG30463
2L	14328462	2L_14328462_SNP [dm3] 2L_14328462_SNP [dm6]	G	C	4.314e^-4	0.955	UTR_5_PRIME ms_2_34Fe DOWNSTREAM wb
3R	24175714	3R_24175714_SNP [dm3] 3R_28349992_SNP [dm6]	G	A	4.324e^-4	0.955	INTERGENIC
3L	9667890	3L_9667890_SNP [dm3] 3L_9674790_SNP [dm6]	T	A	4.328e^-4	0.955	INTRON fry
3R	8147882	3R_8147882_SNP [dm3] 3R_12322160_SNP [dm6]	C	T	4.330e^-4	0.955	DOWNSTREAM tRNA:CR31432 INTERGENIC
2L	19688041	2L_19688041_SNP [dm3] 2L_19688041_SNP [dm6]	A	T	4.341e^-4	0.955	INTRON Lar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19688046	2L_19688046_SNP [dm3] 2L_19688046_SNP [dm6]	C	T	4.341e^-4	0.955	INTRON Lar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19688048	2L_19688048_SNP [dm3] 2L_19688048_SNP [dm6]	G	T	4.341e^-4	0.955	INTRON Lar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9674954	2R_9674954_SNP [dm3] 2R_13787449_SNP [dm6]	A	T	4.342e^-4	0.955	UTR_3_PRIME Cpr50Ca
X	6642252	X_6642252_SNP [dm3] X_6748219_SNP [dm6]	C	A	4.343e^-4	0.955	UPSTREAM CR44964 INTRON CG14439
2R	19459306	2R_19459306_SNP [dm3] 2R_23571783_SNP [dm6]	C	A	4.344e^-4	0.955	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	13090208	2L_13090208_SNP [dm3] 2L_13090208_SNP [dm6]	G	T	4.349e^-4	0.955	EXON CR44197
3L	19299647	3L_19299647_SNP [dm3] 3L_19306547_SNP [dm6]	C	T	4.350e^-4	0.955	DOWNSTREAM pip INTRON pip	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14795609	2R_14795609_SNP [dm3] 2R_18908104_SNP [dm6]	C	A	4.350e^-4	0.955	DOWNSTREAM Vha100-3 INTRON sano
2L	5924767	2L_5924767_SNP [dm3] 2L_5924767_SNP [dm6]	C	A	4.351e^-4	0.955	DOWNSTREAM CR43926 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15067861	2R_15067861_SNP [dm3] 2R_19180356_SNP [dm6]	A	C	4.353e^-4	0.955	INTRON hppy
2R	18553625	2R_18553625_SNP [dm3] 2R_22666120_SNP [dm6]	G	A	4.354e^-4	0.955	UTR_3_PRIME CG42867 UPSTREAM CR42868 DOWNSTREAM CR45269
2L	20269461	2L_20269461_SNP [dm3] 2L_20269461_SNP [dm6]	C	A	4.357e^-4	0.955	INTERGENIC
2R	8561096	2R_8561096_SNP [dm3] 2R_12673591_SNP [dm6]	C	A	4.374e^-4	0.955	INTRON CG42708	TF binding site mE1_TFBS_cad
2R	13815025	2R_13815025_SNP [dm3] 2R_17927520_SNP [dm6]	A	G	4.379e^-4	0.955	DOWNSTREAM Elk INTERGENIC
3R	22554566	3R_22554566_SNP [dm3] 3R_26728844_SNP [dm6]	T	G	4.382e^-4	0.955	SYNONYMOUS_CODING CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo
X	8911338	X_8911338_SNP [dm3] X_9017305_SNP [dm6]	T	G	4.385e^-4	0.955	INTRON CR43836 & 1 other
3L	11173199	3L_11173199_SNP [dm3] 3L_11180099_SNP [dm6]	T	G	4.387e^-4	0.955	INTRON GlcAT-P
3L	10768703	3L_10768703_SNP [dm3] 3L_10775603_SNP [dm6]	A	G	4.389e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2L	5797394	2L_5797394_SNP [dm3] 2L_5797394_SNP [dm6]	A	T	4.390e^-4	0.955	INTRON CG9171
3L	1910277	3L_1910277_SNP [dm3] 3L_1910277_SNP [dm6]	G	A	4.392e^-4	0.955	UPSTREAM CG1887 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	20807070	3R_20807070_SNP [dm3] 3R_24981348_SNP [dm6]	A	G	4.395e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	5437275	3L_5437275_SNP [dm3] 3L_5444175_SNP [dm6]	C	T	4.395e^-4	0.955	INTERGENIC
3L	19308402	3L_19308402_SNP [dm3] 3L_19315302_SNP [dm6]	A	G	4.396e^-4	0.955	INTRON pip
2L	1006729	2L_1006729_SNP [dm3] 2L_1006729_SNP [dm6]	A	G	4.396e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	5805029	2L_5805029_SNP [dm3] 2L_5805029_SNP [dm6]	A	G	4.403e^-4	0.955	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12563074	2R_12563074_SNP [dm3] 2R_16675569_SNP [dm6]	G	A	4.404e^-4	0.955	INTRON CG30463
2L	9973685	2L_9973685_SNP [dm3] 2L_9973685_SNP [dm6]	C	A	4.405e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	12922800	3L_12922800_SNP [dm3] 3L_12929700_SNP [dm6]	A	G	4.415e^-4	0.955	INTERGENIC
2L	9399199	2L_9399199_SNP [dm3] 2L_9399199_SNP [dm6]	T	G	4.418e^-4	0.955	INTRON Shawl
2R	9679585	2R_9679585_SNP [dm3] 2R_13792080_SNP [dm6]	G	T	4.421e^-4	0.955	EXON CR43811
2R	12602148	2R_12602148_SNP [dm3] 2R_16714643_SNP [dm6]	T	G	4.422e^-4	0.955	INTRON CG30463
2R	19435235	2R_19435235_SNP [dm3] 2R_23547712_SNP [dm6]	A	T	4.422e^-4	0.955	UTR_5_PRIME wmd UPSTREAM levy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	16093098	2R_16093098_SNP [dm3] 2R_20205593_SNP [dm6]	G	C	4.424e^-4	0.955	INTERGENIC
2L	20463285	2L_20463285_SNP [dm3] 2L_20463285_SNP [dm6]	C	G	4.428e^-4	0.955	NON_SYNONYMOUS_CODING CG2493	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	23148174	3L_23148174_SNP [dm3] 3L_23155074_SNP [dm6]	A	G	4.430e^-4	0.955	INTERGENIC	transposable element FlyBase
2R	14700233	2R_14700233_DEL [dm3] 2R_18812728_DEL [dm6]	GAATG	G	4.432e^-4	0.955	INTRON CG15096
3R	25262014	3R_25262014_DEL [dm3] 3R_29436292_DEL [dm6]	TA	T	4.441e^-4	0.955	INTRON Ptp99A
3L	10717948	3L_10717948_SNP [dm3] 3L_10724848_SNP [dm6]	C	T	4.460e^-4	0.955	INTERGENIC
3R	12514684	3R_12514684_SNP [dm3] 3R_16688962_SNP [dm6]	C	T	4.470e^-4	0.955	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	2588415	X_2588415_SNP [dm3] X_2694382_SNP [dm6]	T	A	4.472e^-4	0.955	UPSTREAM CG2650 DOWNSTREAM CG2658 INTERGENIC
X	17269583	X_17269583_SNP [dm3] X_17375550_SNP [dm6]	A	G	4.477e^-4	0.955	INTERGENIC
2L	11086850	2L_11086850_SNP [dm3] 2L_11086850_SNP [dm6]	A	G	4.482e^-4	0.955	UTR_5_PRIME CG16854	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	2588303	X_2588303_SNP [dm3] X_2694270_SNP [dm6]	C	T	4.486e^-4	0.955	UPSTREAM CG2650 DOWNSTREAM CG2658 INTERGENIC
X	6641239	X_6641239_SNP [dm3] X_6747206_SNP [dm6]	A	G	4.487e^-4	0.955	UPSTREAM CG14439 DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	26865824	3R_26865824_SNP [dm3] 3R_31040102_SNP [dm6]	T	G	4.499e^-4	0.955	START_GAINED CanA1 UTR_5_PRIME CanA1	TF binding site mE1_TFBS_sbb
X	18044915	X_18044915_SNP [dm3] X_18150882_SNP [dm6]	G	A	4.507e^-4	0.955	INTERGENIC
2L	5666735	2L_5666735_SNP [dm3] 2L_5666735_SNP [dm6]	G	A	4.517e^-4	0.955	INTRON Hsp60C
2R	9557912	2R_9557912_SNP [dm3] 2R_13670407_SNP [dm6]	G	A	4.522e^-4	0.955	SYNONYMOUS_CODING CG18368 INTRON fas
3R	4859909	3R_4859909_SNP [dm3] 3R_9034187_SNP [dm6]	T	C	4.526e^-4	0.955	UPSTREAM neur INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19463701	2R_19463701_SNP [dm3] 2R_23576178_SNP [dm6]	C	T	4.527e^-4	0.955	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9133943	2R_9133943_SNP [dm3] 2R_13246438_SNP [dm6]	A	G	4.527e^-4	0.955	UPSTREAM Mp20 INTERGENIC
2L	8335002	2L_8335002_SNP [dm3] 2L_8335002_SNP [dm6]	C	A	4.528e^-4	0.955	INTERGENIC
2L	947672	2L_947672_SNP [dm3] 2L_947672_SNP [dm6]	C	T	4.532e^-4	0.955	INTRON CG4341
2L	10430948	2L_10430948_SNP [dm3] 2L_10430948_SNP [dm6]	G	C	4.537e^-4	0.955	UPSTREAM TfIIB & 1 other DOWNSTREAM CG5188 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4278870	2L_4278870_SNP [dm3] 2L_4278870_SNP [dm6]	A	T	4.540e^-4	0.955	SYNONYMOUS_CODING Art2	TF binding site BDTNP1_TFBS_dl
3R	10354935	3R_10354935_SNP [dm3] 3R_14529213_SNP [dm6]	G	A	4.543e^-4	0.955	SYNONYMOUS_CODING Pde6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16947287	X_16947287_SNP [dm3] X_17053254_SNP [dm6]	C	T	4.550e^-4	0.955	INTRON CG45002
2L	4162420	2L_4162420_SNP [dm3] 2L_4162420_SNP [dm6]	C	T	4.555e^-4	0.955	INTERGENIC
2L	4162422	2L_4162422_INS [dm3] 2L_4162422_INS [dm6]	C	CAT	4.555e^-4	0.955	INTERGENIC
3R	14063330	3R_14063330_SNP [dm3] 3R_18237608_SNP [dm6]	A	T	4.558e^-4	0.955	INTRON repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5437283	3L_5437283_SNP [dm3] 3L_5444183_SNP [dm6]	C	G	4.562e^-4	0.955	INTERGENIC
3L	835535	3L_835535_SNP [dm3] 3L_835535_SNP [dm6]	G	A	4.579e^-4	0.955	UPSTREAM CG42554 DOWNSTREAM CG42553 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19423653	X_19423653_SNP [dm3] X_19529620_SNP [dm6]	G	T	4.581e^-4	0.955	INTRON CoRest	TF binding site mE1_TFBS_chinmo
2R	13860353	2R_13860353_SNP [dm3] 2R_17972848_SNP [dm6]	C	A	4.591e^-4	0.955	INTERGENIC
2R	11693260	2R_11693260_SNP [dm3] 2R_15805755_SNP [dm6]	C	T	4.593e^-4	0.955	INTRON tun & 1 other
2R	14925207	2R_14925207_SNP [dm3] 2R_19037702_SNP [dm6]	A	C	4.593e^-4	0.955	INTERGENIC
2L	10432123	2L_10432123_SNP [dm3] 2L_10432123_SNP [dm6]	A	C	4.607e^-4	0.955	SYNONYMOUS_CODING TfIIB DOWNSTREAM CG5337	TF binding site mE1_TFBS_sens
2L	6344139	2L_6344139_SNP [dm3] 2L_6344139_SNP [dm6]	C	T	4.609e^-4	0.955	INTRON Cpr	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_h mE1_TFBS_HSA
2R	17732693	2R_17732693_SNP [dm3] 2R_21845188_SNP [dm6]	G	A	4.611e^-4	0.955	INTERGENIC
2R	9676655	2R_9676655_SNP [dm3] 2R_13789150_SNP [dm6]	G	A	4.618e^-4	0.955	INTERGENIC
3L	7266444	3L_7266444_SNP [dm3] 3L_7273344_SNP [dm6]	G	T	4.622e^-4	0.955	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
2R	17788543	2R_17788543_SNP [dm3] 2R_21901038_SNP [dm6]	C	T	4.637e^-4	0.955	INTRON Fili	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6757340	3L_6757340_SNP [dm3] 3L_6764240_SNP [dm6]	A	C	4.637e^-4	0.955	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	9557930	2R_9557930_SNP [dm3] 2R_13670425_SNP [dm6]	A	G	4.645e^-4	0.955	SYNONYMOUS_CODING CG18368 INTRON fas
2R	11187570	2R_11187570_SNP [dm3] 2R_15300065_SNP [dm6]	T	G	4.648e^-4	0.955	INTRON Trpm
X	21456873	X_21456873_DEL [dm3] X_21585846_DEL [dm6]	CTGCCGCAACC...	C	4.656e^-4	0.955	INTERGENIC	transposable element FlyBase
X	6451166	X_6451166_SNP [dm3] X_6557133_SNP [dm6]	C	T	4.665e^-4	0.955	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	9959673	2R_9959673_SNP [dm3] 2R_14072168_SNP [dm6]	T	G	4.670e^-4	0.955	INTRON Prosap	TF binding site mE1_TFBS_cad
3L	835288	3L_835288_SNP [dm3] 3L_835288_SNP [dm6]	T	C	4.673e^-4	0.955	SYNONYMOUS_CODING CG42553 UPSTREAM CG42554	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	1221892	X_1221892_SNP [dm3] X_1327859_SNP [dm6]	T	C	4.674e^-4	0.955	SYNONYMOUS_CODING fs_1_N
X	7968742	X_7968742_SNP [dm3] X_8074709_SNP [dm6]	T	C	4.675e^-4	0.955	SYNONYMOUS_CODING Upf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	6595623	2L_6595623_SNP [dm3] 2L_6595623_SNP [dm6]	A	T	4.676e^-4	0.955	INTRON CG11319
2R	7138122	2R_7138122_SNP [dm3] 2R_11250617_SNP [dm6]	A	T	4.689e^-4	0.955	SYNONYMOUS_CODING Or47a DOWNSTREAM CG43112
3R	25202104	3R_25202104_SNP [dm3] 3R_29376382_SNP [dm6]	A	G	4.689e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25202119	3R_25202119_SNP [dm3] 3R_29376397_SNP [dm6]	C	T	4.689e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8391597	2L_8391597_SNP [dm3] 2L_8391597_SNP [dm6]	T	C	4.699e^-4	0.955	NON_SYNONYMOUS_CODING CG42820 DOWNSTREAM Acp29AB
X	7586135	X_7586135_INS [dm3] X_7692102_INS [dm6]	T	TGCGT	4.702e^-4	0.955	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	10389280	3R_10389280_SNP [dm3] 3R_14563558_SNP [dm6]	G	T	4.704e^-4	0.955	DOWNSTREAM CG14851 & 1 other INTERGENIC
3R	17395965	3R_17395965_INS [dm3] 3R_21570243_INS [dm6]	T	TGTTTT	4.706e^-4	0.955	DOWNSTREAM InR INTERGENIC
2R	15540421	2R_15540421_SNP [dm3] 2R_19652916_SNP [dm6]	T	A	4.709e^-4	0.955	UPSTREAM CR44213 DOWNSTREAM Ir56e EXON CR44212
2R	19690403	2R_19690403_SNP [dm3] 2R_23802880_SNP [dm6]	A	C	4.713e^-4	0.955	UTR_3_PRIME CG30177
2R	18553632	2R_18553632_INS [dm3] 2R_22666127_INS [dm6]	A	AG	4.713e^-4	0.955	UTR_3_PRIME CG42867 UPSTREAM CR42868 EXON CR45269
2R	12088792	2R_12088792_SNP [dm3] 2R_16201287_SNP [dm6]	A	G	4.726e^-4	0.955	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17981307	3R_17981307_DEL [dm3] 3R_22155585_DEL [dm6]	AATTACCCATTGT...	A	4.727e^-4	0.955	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5708900	X_5708900_SNP [dm3] X_5814867_SNP [dm6]	G	A	4.729e^-4	0.955	UTR_3_PRIME CG15766
2R	15570066	2R_15570066_SNP [dm3] 2R_19682561_SNP [dm6]	C	G	4.736e^-4	0.955	UTR_3_PRIME CG34198 DOWNSTREAM CR44505	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18579381	2L_18579381_SNP [dm3] 2L_18579381_SNP [dm6]	C	A	4.751e^-4	0.955	INTRON Pde11
2R	13469493	2R_13469493_SNP [dm3] 2R_17581988_SNP [dm6]	A	T	4.763e^-4	0.955	UPSTREAM Dcr-2 DOWNSTREAM CG6484 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	12133148	2L_12133148_SNP [dm3] 2L_12133148_SNP [dm6]	C	T	4.775e^-4	0.955	SYNONYMOUS_CODING rho-6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17956192	3R_17956192_SNP [dm3] 3R_22130470_SNP [dm6]	C	A	4.791e^-4	0.955	INTRON CG42390
3R	9287668	3R_9287668_SNP [dm3] 3R_13461946_SNP [dm6]	A	G	4.795e^-4	0.955	INTRON CR17025 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12842397	2R_12842397_SNP [dm3] 2R_16954892_SNP [dm6]	C	A	4.818e^-4	0.955	SYNONYMOUS_CODING mute UPSTREAM PIG-V	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12237551	3L_12237551_SNP [dm3] 3L_12244451_SNP [dm6]	C	T	4.824e^-4	0.955	INTRON app
3L	1969287	3L_1969287_SNP [dm3] 3L_1969287_SNP [dm6]	A	G	4.826e^-4	0.955	DOWNSTREAM CG11815 INTRON CG1927
2L	19367425	2L_19367425_SNP [dm3] 2L_19367425_SNP [dm6]	C	G	4.851e^-4	0.955	INTERGENIC
3L	15986673	3L_15986673_SNP [dm3] 3L_15993573_SNP [dm6]	G	A	4.853e^-4	0.955	UTR_3_PRIME CG5830
3L	23874213	3L_23874213_SNP [dm3] 3L_23881113_SNP [dm6]	G	T	4.858e^-4	0.955	DOWNSTREAM CR43941 INTRON CG40470	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6451143	X_6451143_SNP [dm3] X_6557110_SNP [dm6]	A	C	4.859e^-4	0.955	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
X	17389209	X_17389209_SNP [dm3] X_17495176_SNP [dm6]	T	C	4.861e^-4	0.955	INTRON CG43658
2R	15067740	2R_15067740_SNP [dm3] 2R_19180235_SNP [dm6]	T	C	4.863e^-4	0.955	INTRON hppy
X	5443755	X_5443755_SNP [dm3] X_5549722_SNP [dm6]	T	A	4.863e^-4	0.955	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6397001	2R_6397001_SNP [dm3] 2R_10509496_SNP [dm6]	C	A	4.876e^-4	0.955	SYNONYMOUS_CODING lola INTRON lola	TF binding site mE1_TFBS_cad
2R	2452853	2R_2452853_SNP [dm3] 2R_6565348_SNP [dm6]	A	G	4.877e^-4	0.955	INTRON jing
2L	19367417	2L_19367417_DEL [dm3] 2L_19367417_DEL [dm6]	TC	T	4.882e^-4	0.955	INTERGENIC
2R	19119543	2R_19119543_SNP [dm3] 2R_23232020_SNP [dm6]	A	C	4.884e^-4	0.955	UPSTREAM CG3092 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	17649122	2R_17649122_SNP [dm3] 2R_21761617_SNP [dm6]	T	G	4.901e^-4	0.955	INTERGENIC
X	21457621	X_21457621_INS [dm3] X_21586594_INS [dm6]	G	GTTTG	4.904e^-4	0.955	INTERGENIC
X	2590444	X_2590444_SNP [dm3] X_2696411_SNP [dm6]	A	G	4.908e^-4	0.955	SYNONYMOUS_CODING CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5898563	3L_5898563_SNP [dm3] 3L_5905463_SNP [dm6]	C	T	4.909e^-4	0.955	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486
X	5323249	X_5323249_SNP [dm3] X_5429216_SNP [dm6]	T	G	4.917e^-4	0.955	UPSTREAM CG15784 DOWNSTREAM CG16756 EXON CR45517
2R	18778192	2R_18778192_SNP [dm3] 2R_22890669_SNP [dm6]	T	C	4.917e^-4	0.955	INTRON MED23	TF binding site mE1_TFBS_cad
X	11854026	X_11854026_SNP [dm3] X_11959993_SNP [dm6]	G	A	4.922e^-4	0.955	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4242130	3L_4242130_SNP [dm3] 3L_4242130_SNP [dm6]	T	A	4.926e^-4	0.955	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17956176	3R_17956176_SNP [dm3] 3R_22130454_SNP [dm6]	A	T	4.926e^-4	0.955	SPLICE_SITE_REGION CG42390 INTRON CG42390
3R	26822787	3R_26822787_SNP [dm3] 3R_30997065_SNP [dm6]	T	C	4.929e^-4	0.955	INTRON 5-HT7
3L	613515	3L_613515_SNP [dm3] 3L_613515_SNP [dm6]	G	A	4.934e^-4	0.955	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2R	10616646	2R_10616646_SNP [dm3] 2R_14729141_SNP [dm6]	A	G	4.934e^-4	0.955	INTERGENIC
X	17515024	X_17515024_SNP [dm3] X_17620991_SNP [dm6]	A	G	4.939e^-4	0.955	INTERGENIC
2R	17935551	2R_17935551_SNP [dm3] 2R_22048046_SNP [dm6]	G	A	4.945e^-4	0.955	INTERGENIC
3R	7040540	3R_7040540_SNP [dm3] 3R_11214818_SNP [dm6]	C	G	4.948e^-4	0.955	UPSTREAM ZnT86D DOWNSTREAM RpS25 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3522171	3L_3522171_SNP [dm3] 3L_3522171_SNP [dm6]	A	C	4.957e^-4	0.955	DOWNSTREAM CR45043 INTRON Eip63E
2R	16584395	2R_16584395_DEL [dm3] 2R_20696890_DEL [dm6]	CTGAT	C	4.965e^-4	0.955	INTERGENIC
2L	17295014	2L_17295014_SNP [dm3] 2L_17295014_SNP [dm6]	G	C	4.968e^-4	0.955	INTERGENIC
2R	9676997	2R_9676997_SNP [dm3] 2R_13789492_SNP [dm6]	G	A	4.980e^-4	0.955	INTERGENIC
3R	22561872	3R_22561872_SNP [dm3] 3R_26736150_SNP [dm6]	C	T	4.982e^-4	0.955	INTRON CG6403
X	17070971	X_17070971_SNP [dm3] X_17176938_SNP [dm6]	G	T	4.988e^-4	0.955	UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	6536377	2R_6536377_SNP [dm3] 2R_10648872_SNP [dm6]	T	C	4.995e^-4	0.955	UPSTREAM CG12934 DOWNSTREAM Elp2 INTERGENIC
X	2386969	X_2386969_SNP [dm3] X_2492936_SNP [dm6]	G	C	4.998e^-4	0.955	INTRON trol
2R	9586403	2R_9586403_SNP [dm3] 2R_13698898_SNP [dm6]	A	T	5.002e^-4	0.955	INTRON fas
3L	6680769	3L_6680769_SNP [dm3] 3L_6687669_SNP [dm6]	T	A	5.004e^-4	0.955	INTERGENIC
3L	5246510	3L_5246510_SNP [dm3] 3L_5253410_SNP [dm6]	A	C	5.008e^-4	0.955	INTRON shep
X	16925158	X_16925158_SNP [dm3] X_17031125_SNP [dm6]	T	C	5.010e^-4	0.955	INTRON CG45002
3L	6757470	3L_6757470_SNP [dm3] 3L_6764370_SNP [dm6]	T	C	5.011e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	7900869	2R_7900869_SNP [dm3] 2R_12013364_SNP [dm6]	T	G	5.015e^-4	0.955	INTRON otk	TF binding site mE1_TFBS_Kr
2L	7624261	2L_7624261_SNP [dm3] 2L_7624261_SNP [dm6]	C	T	5.016e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	8569336	3R_8569336_SNP [dm3] 3R_12743614_SNP [dm6]	G	C	5.028e^-4	0.955	NON_SYNONYMOUS_CODING CG5999
2L	8704556	2L_8704556_SNP [dm3] 2L_8704556_SNP [dm6]	G	T	5.033e^-4	0.955	INTRON Hnf4 EXON CR44992
X	12217501	X_12217501_DEL [dm3] X_12323468_DEL [dm6]	GG	G	5.039e^-4	0.955	INTRON Ten-a
2L	4676278	2L_4676278_SNP [dm3] 2L_4676278_SNP [dm6]	T	A	5.044e^-4	0.955	INTERGENIC
2L	4994484	2L_4994484_SNP [dm3] 2L_4994484_SNP [dm6]	G	C	5.047e^-4	0.955	INTRON Rtnl1
3R	24425869	3R_24425869_SNP [dm3] 3R_28600147_SNP [dm6]	C	A	5.050e^-4	0.955	UPSTREAM Noa36 & 1 other INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx transposable element FlyBase
3R	9286654	3R_9286654_SNP [dm3] 3R_13460932_SNP [dm6]	A	T	5.073e^-4	0.955	INTRON CR17025 & 1 other
3R	7015847	3R_7015847_SNP [dm3] 3R_11190125_SNP [dm6]	G	T	5.074e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25570656	3R_25570656_SNP [dm3] 3R_29744934_SNP [dm6]	G	A	5.097e^-4	0.955	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22741186	3R_22741186_DEL [dm3] 3R_26915464_DEL [dm6]	TTAAGTGCTC	T	5.098e^-4	0.955	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10031990	2R_10031990_SNP [dm3] 2R_14144485_SNP [dm6]	T	C	5.108e^-4	0.955	DOWNSTREAM mir-989 INTERGENIC
2L	727255	2L_727255_SNP [dm3] 2L_727255_SNP [dm6]	C	A	5.110e^-4	0.955	INTERGENIC
3R	8052065	3R_8052065_SNP [dm3] 3R_12226343_SNP [dm6]	A	C	5.119e^-4	0.955	UPSTREAM CG12256 DOWNSTREAM CR43477 INTERGENIC
2R	9914303	2R_9914303_INS [dm3] 2R_14026798_INS [dm6]	A	AGCAATT	5.120e^-4	0.955	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	18978711	2R_18978711_SNP [dm3] 2R_23091188_SNP [dm6]	A	C	5.144e^-4	0.955	INTRON CG9876	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	18558219	2R_18558219_SNP [dm3] 2R_22670714_SNP [dm6]	T	A	5.144e^-4	0.955	UTR_5_PRIME RYBP UPSTREAM RYBP DOWNSTREAM CG13516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	1663233	2L_1663233_DEL [dm3] 2L_1663233_DEL [dm6]	TC	T	5.145e^-4	0.955	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16109786	3L_16109786_SNP [dm3] 3L_16116686_SNP [dm6]	C	T	5.148e^-4	0.955	INTRON Taf4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18775913	2R_18775913_SNP [dm3] 2R_22888390_SNP [dm6]	A	G	5.159e^-4	0.955	SYNONYMOUS_CODING Gmer UPSTREAM MED23 DOWNSTREAM asrij	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4891190	2L_4891190_SNP [dm3] 2L_4891190_SNP [dm6]	C	G	5.159e^-4	0.955	UTR_3_PRIME CG15625 UPSTREAM CG3036 DOWNSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12091150	2R_12091150_SNP [dm3] 2R_16203645_SNP [dm6]	T	A	5.162e^-4	0.955	UTR_3_PRIME mrj UPSTREAM shark
3L	11173203	3L_11173203_SNP [dm3] 3L_11180103_SNP [dm6]	A	T	5.169e^-4	0.955	INTRON GlcAT-P
3L	6757222	3L_6757222_SNP [dm3] 3L_6764122_SNP [dm6]	G	A	5.170e^-4	0.955	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	10751602	X_10751602_SNP [dm3] X_10857569_SNP [dm6]	G	A	5.170e^-4	0.955	UPSTREAM CG2186 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	14512964	2R_14512964_SNP [dm3] 2R_18625459_SNP [dm6]	C	T	5.175e^-4	0.955	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11873477	X_11873477_SNP [dm3] X_11979444_SNP [dm6]	A	G	5.181e^-4	0.955	INTRON cac
2R	20191529	2R_20191529_SNP [dm3] 2R_24304006_SNP [dm6]	C	T	5.182e^-4	0.955	INTERGENIC	regulatory region REDfly_CRMs
X	6498797	X_6498797_SNP [dm3] X_6604764_SNP [dm6]	G	A	5.193e^-4	0.955	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19292373	3R_19292373_SNP [dm3] 3R_23466651_SNP [dm6]	G	A	5.196e^-4	0.955	INTRON CG4374
X	16761869	X_16761869_SNP [dm3] X_16867836_SNP [dm6]	G	A	5.201e^-4	0.955	INTRON CG13003
2L	1850586	2L_1850586_SNP [dm3] 2L_1850586_SNP [dm6]	G	T	5.216e^-4	0.955	INTRON wry
2R	1192507	2R_1192507_SNP [dm3] 2R_5305002_SNP [dm6]	T	G	5.216e^-4	0.955	INTERGENIC	transposable element FlyBase
2R	10009606	2R_10009606_SNP [dm3] 2R_14122101_SNP [dm6]	G	T	5.218e^-4	0.955	INTRON Prosap
3L	12564316	3L_12564316_SNP [dm3] 3L_12571216_SNP [dm6]	G	A	5.220e^-4	0.955	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	17179415	X_17179415_SNP [dm3] X_17285382_SNP [dm6]	G	T	5.221e^-4	0.955	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl
X	15204317	X_15204317_SNP [dm3] X_15310284_SNP [dm6]	T	C	5.229e^-4	0.955	INTRON gce
X	21139934	X_21139934_INS [dm3] X_21268907_INS [dm6]	T	TGGCAC	5.239e^-4	0.955	INTRON CG32521
X	11854017	X_11854017_SNP [dm3] X_11959984_SNP [dm6]	A	G	5.246e^-4	0.955	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18964592	X_18964592_SNP [dm3] X_19070559_SNP [dm6]	T	C	5.247e^-4	0.955	INTERGENIC
3L	13221927	3L_13221927_SNP [dm3] 3L_13228827_SNP [dm6]	A	G	5.249e^-4	0.955	UTR_5_PRIME caps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15143280	2L_15143280_SNP [dm3] 2L_15143280_SNP [dm6]	C	G	5.254e^-4	0.955	INTERGENIC

By genomic position
Variant impact
Gene name

lsm_Week1_Fecundity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results