DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.747e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.06716

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.8898	0.0867

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1894 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10836895	3L_10836895_SNP [dm3] 3L_10843795_SNP [dm6]	A	G	7.532e^-7	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	9676496	2R_9676496_SNP [dm3] 2R_13788991_SNP [dm6]	T	C	7.843e^-7	0.66	INTERGENIC
2R	5389944	2R_5389944_SNP [dm3] 2R_9502439_SNP [dm6]	C	A	1.064e^-6	0.66	NON_SYNONYMOUS_CODING Wnt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1354357	2R_1354357_SNP [dm3] 2R_5466852_SNP [dm6]	G	T	2.034e^-6	0.66	INTERGENIC	transposable element FlyBase
2R	14676098	2R_14676098_SNP [dm3] 2R_18788593_SNP [dm6]	C	T	2.884e^-6	0.66	INTRON CG15080
2R	9799311	2R_9799311_SNP [dm3] 2R_13911806_SNP [dm6]	C	T	3.443e^-6	0.66	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	16925265	X_16925265_SNP [dm3] X_17031232_SNP [dm6]	G	C	3.486e^-6	0.66	INTRON CG45002
2R	9799329	2R_9799329_INS [dm3] 2R_13911824_INS [dm6]	A	TGATGGTG	3.520e^-6	0.66	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9799332	2R_9799332_SNP [dm3] 2R_13911827_SNP [dm6]	A	G	3.520e^-6	0.66	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9799335	2R_9799335_SNP [dm3] 2R_13911830_SNP [dm6]	C	T	3.520e^-6	0.66	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9675820	2R_9675820_SNP [dm3] 2R_13788315_SNP [dm6]	T	A	4.789e^-6	0.771	DOWNSTREAM Cpr50Ca INTERGENIC
2R	12145282	2R_12145282_SNP [dm3] 2R_16257777_SNP [dm6]	C	A	4.931e^-6	0.771	INTRON CngA
3L	10836651	3L_10836651_SNP [dm3] 3L_10843551_SNP [dm6]	C	T	5.545e^-6	0.792	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9676653	2R_9676653_SNP [dm3] 2R_13789148_SNP [dm6]	G	A	6.104e^-6	0.792	INTERGENIC
X	16925264	X_16925264_SNP [dm3] X_17031231_SNP [dm6]	G	A	6.336e^-6	0.792	INTRON CG45002
2R	9679611	2R_9679611_DEL [dm3] 2R_13792106_DEL [dm6]	CC	C	7.854e^-6	0.812	EXON CR43811
3L	12494166	3L_12494166_SNP [dm3] 3L_12501066_SNP [dm6]	C	T	8.045e^-6	0.812	UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
2L	20423664	2L_20423664_SNP [dm3] 2L_20423664_SNP [dm6]	G	A	8.059e^-6	0.812	DOWNSTREAM Arpc2 INTRON CG15130
2R	1354359	2R_1354359_SNP [dm3] 2R_5466854_SNP [dm6]	C	A	8.268e^-6	0.812	INTERGENIC	transposable element FlyBase
2R	17647628	2R_17647628_SNP [dm3] 2R_21760123_SNP [dm6]	C	A	8.662e^-6	0.812	INTERGENIC
2R	12145295	2R_12145295_DEL [dm3] 2R_16257790_DEL [dm6]	ATTGA	A	1.202e^-5	0.926	INTRON CngA
2R	7220740	2R_7220740_SNP [dm3] 2R_11333235_SNP [dm6]	C	T	1.245e^-5	0.926	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13384648	2R_13384648_SNP [dm3] 2R_17497143_SNP [dm6]	G	A	1.282e^-5	0.926	INTERGENIC
X	5014255	X_5014255_DEL [dm3] X_5120222_DEL [dm6]	ACCA	A	1.369e^-5	0.926	INTRON rg & 1 other
3R	16300782	3R_16300782_SNP [dm3] 3R_20475060_SNP [dm6]	T	C	1.387e^-5	0.926	INTRON Gfrl
3R	19207896	3R_19207896_SNP [dm3] 3R_23382174_SNP [dm6]	T	A	1.437e^-5	0.926	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1352419	2R_1352419_SNP [dm3] 2R_5464914_SNP [dm6]	G	T	1.464e^-5	0.926	INTERGENIC	transposable element FlyBase
2R	8620603	2R_8620603_SNP [dm3] 2R_12733098_SNP [dm6]	T	C	1.475e^-5	0.926	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20191493	2R_20191493_SNP [dm3] 2R_24303970_SNP [dm6]	G	A	1.622e^-5	0.926	INTERGENIC	regulatory region REDfly_CRMs
2L	19688097	2L_19688097_SNP [dm3] 2L_19688097_SNP [dm6]	T	A	1.688e^-5	0.926	INTRON Lar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2L	10430998	2L_10430998_SNP [dm3] 2L_10430998_SNP [dm6]	T	A	1.710e^-5	0.926	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8151847	3R_8151847_SNP [dm3] 3R_12326125_SNP [dm6]	C	T	1.725e^-5	0.926	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	12145306	2R_12145306_SNP [dm3] 2R_16257801_SNP [dm6]	A	G	1.812e^-5	0.926	INTRON CngA
2L	8423456	2L_8423456_DEL [dm3] 2L_8423456_DEL [dm6]	TGCT	T	1.846e^-5	0.926	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	10836872	3L_10836872_SNP [dm3] 3L_10843772_SNP [dm6]	G	T	1.905e^-5	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	17647629	2R_17647629_SNP [dm3] 2R_21760124_SNP [dm6]	T	A	1.938e^-5	0.926	INTERGENIC
2R	14925367	2R_14925367_SNP [dm3] 2R_19037862_SNP [dm6]	A	G	1.944e^-5	0.926	INTERGENIC
2R	7220722	2R_7220722_SNP [dm3] 2R_11333217_SNP [dm6]	G	A	1.949e^-5	0.926	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20517634	3R_20517634_SNP [dm3] 3R_24691912_SNP [dm6]	C	T	1.987e^-5	0.926	SYNONYMOUS_CODING slo
2R	7220794	2R_7220794_SNP [dm3] 2R_11333289_SNP [dm6]	T	C	1.989e^-5	0.926	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10431178	2L_10431178_SNP [dm3] 2L_10431178_SNP [dm6]	A	T	2.049e^-5	0.926	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8151852	3R_8151852_SNP [dm3] 3R_12326130_SNP [dm6]	C	G	2.073e^-5	0.926	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	6732826	X_6732826_SNP [dm3] X_6838793_SNP [dm6]	T	A	2.125e^-5	0.927	UTR_3_PRIME CG14435 DOWNSTREAM nonC & 1 other
3L	12494061	3L_12494061_SNP [dm3] 3L_12500961_SNP [dm6]	T	C	2.339e^-5	0.947	NON_SYNONYMOUS_CODING CG10638 UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
2L	18814298	2L_18814298_SNP [dm3] 2L_18814298_SNP [dm6]	T	C	2.366e^-5	0.947	DOWNSTREAM CG17325 & 1 other INTERGENIC
2R	12073056	2R_12073056_SNP [dm3] 2R_16185551_SNP [dm6]	A	G	2.414e^-5	0.947	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	17647635	2R_17647635_INS [dm3] 2R_21760130_INS [dm6]	C	CC	2.434e^-5	0.947	INTERGENIC
2R	9675391	2R_9675391_SNP [dm3] 2R_13787886_SNP [dm6]	G	A	2.448e^-5	0.947	DOWNSTREAM Cpr50Ca INTERGENIC
2R	9798932	2R_9798932_SNP [dm3] 2R_13911427_SNP [dm6]	G	A	2.474e^-5	0.947	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10368541	3R_10368541_SNP [dm3] 3R_14542819_SNP [dm6]	G	C	2.596e^-5	0.974	INTRON Pde6
2R	12074021	2R_12074021_SNP [dm3] 2R_16186516_SNP [dm6]	C	A	2.741e^-5	0.978	UPSTREAM clu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Ubx
X	4799123	X_4799123_SNP [dm3] X_4905090_SNP [dm6]	A	T	2.931e^-5	0.978	SYNONYMOUS_CODING CG42594 UTR_3_PRIME CG42594	TF binding site mE1_TFBS_chinmo
3R	13660339	3R_13660339_SNP [dm3] 3R_17834617_SNP [dm6]	A	G	2.977e^-5	0.978	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	14925188	2R_14925188_SNP [dm3] 2R_19037683_SNP [dm6]	A	G	3.009e^-5	0.978	INTERGENIC
2L	18814299	2L_18814299_SNP [dm3] 2L_18814299_SNP [dm6]	A	G	3.043e^-5	0.978	DOWNSTREAM CG17325 & 1 other INTERGENIC
2L	22569694	2L_22569694_SNP [dm3] 2L_22676962_SNP [dm6]	A	G	3.151e^-5	0.978	INTRON CG40006
2L	10431186	2L_10431186_SNP [dm3] 2L_10431186_SNP [dm6]	A	G	3.155e^-5	0.978	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19573478	2R_19573478_SNP [dm3] 2R_23685955_SNP [dm6]	C	T	3.193e^-5	0.978	UPSTREAM l_2_efl INTRON St3
3R	8151848	3R_8151848_SNP [dm3] 3R_12326126_SNP [dm6]	T	G	3.358e^-5	0.978	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	12100255	2R_12100255_SNP [dm3] 2R_16212750_SNP [dm6]	T	C	3.379e^-5	0.978	INTRON mrj
3L	2545668	3L_2545668_DEL [dm3] 3L_2545668_DEL [dm6]	TAAATTAAAGGCTTTGT...	T	3.494e^-5	0.978	INTRON Spn
2R	12076005	2R_12076005_SNP [dm3] 2R_16188500_SNP [dm6]	C	T	3.574e^-5	0.978	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17002143	2R_17002143_SNP [dm3] 2R_21114638_SNP [dm6]	A	C	3.691e^-5	0.978	INTRON ktub
X	9006441	X_9006441_INS [dm3] X_9112408_INS [dm6]	C	CTT	3.718e^-5	0.978	INTRON AP-1gamma
X	16925193	X_16925193_SNP [dm3] X_17031160_SNP [dm6]	A	T	3.838e^-5	0.978	INTRON CG45002
3L	5212948	3L_5212948_SNP [dm3] 3L_5219848_SNP [dm6]	T	C	3.839e^-5	0.978	INTRON shep
3L	2545690	3L_2545690_SNP [dm3] 3L_2545690_SNP [dm6]	G	A	3.877e^-5	0.978	INTRON Spn
2R	9675734	2R_9675734_SNP [dm3] 2R_13788229_SNP [dm6]	T	C	3.922e^-5	0.978	DOWNSTREAM Cpr50Ca INTERGENIC
2R	15540432	2R_15540432_SNP [dm3] 2R_19652927_SNP [dm6]	C	T	3.954e^-5	0.978	UPSTREAM CR44213 DOWNSTREAM Ir56e EXON CR44212
3L	10767055	3L_10767055_SNP [dm3] 3L_10773955_SNP [dm6]	A	G	3.974e^-5	0.978	DOWNSTREAM CG43245 INTERGENIC
X	8100507	X_8100507_SNP [dm3] X_8206474_SNP [dm6]	C	A	4.087e^-5	0.978	INTRON sdt
2R	8114508	2R_8114508_SNP [dm3] 2R_12227003_SNP [dm6]	C	T	4.103e^-5	0.978	UPSTREAM CG8854 INTRON CG8854
2R	7220854	2R_7220854_SNP [dm3] 2R_11333349_SNP [dm6]	T	C	4.194e^-5	0.978	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16925175	X_16925175_SNP [dm3] X_17031142_SNP [dm6]	A	G	4.243e^-5	0.978	INTRON CG45002
2R	10033109	2R_10033109_SNP [dm3] 2R_14145604_SNP [dm6]	C	T	4.465e^-5	0.978	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	15295921	X_15295921_DEL [dm3] X_15401888_DEL [dm6]	AA	A	4.467e^-5	0.978	INTRON Cngl
3R	1742137	3R_1742137_SNP [dm3] 3R_5916415_SNP [dm6]	A	G	4.474e^-5	0.978	INTRON CG34113
2L	5718115	2L_5718115_SNP [dm3] 2L_5718115_SNP [dm6]	A	C	4.579e^-5	0.978	DOWNSTREAM CG11149 & 1 other INTERGENIC
2R	9677964	2R_9677964_SNP [dm3] 2R_13790459_SNP [dm6]	A	T	4.657e^-5	0.978	INTERGENIC
2R	14456857	2R_14456857_SNP [dm3] 2R_18569352_SNP [dm6]	T	A	4.797e^-5	0.978	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	5014243	X_5014243_SNP [dm3] X_5120210_SNP [dm6]	G	C	4.857e^-5	0.978	INTRON rg & 1 other
2R	14925361	2R_14925361_INS [dm3] 2R_19037856_INS [dm6]	A	AA	4.954e^-5	0.978	INTERGENIC
2R	9675960	2R_9675960_SNP [dm3] 2R_13788455_SNP [dm6]	G	A	5.006e^-5	0.978	DOWNSTREAM Cpr50Ca INTERGENIC
2R	10011581	2R_10011581_SNP [dm3] 2R_14124076_SNP [dm6]	C	T	5.033e^-5	0.978	INTRON Prosap
2R	16443782	2R_16443782_SNP [dm3] 2R_20556277_SNP [dm6]	C	T	5.070e^-5	0.978	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11943626	2R_11943626_SNP [dm3] 2R_16056121_SNP [dm6]	G	C	5.121e^-5	0.978	INTRON CG8405
X	16947237	X_16947237_SNP [dm3] X_17053204_SNP [dm6]	C	G	5.210e^-5	0.978	INTRON CG45002
2R	17929699	2R_17929699_SNP [dm3] 2R_22042194_SNP [dm6]	A	G	5.234e^-5	0.978	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	9702820	3R_9702820_SNP [dm3] 3R_13877098_SNP [dm6]	C	T	5.272e^-5	0.978	UTR_5_PRIME E5	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7900843	2R_7900843_SNP [dm3] 2R_12013338_SNP [dm6]	G	A	5.279e^-5	0.978	INTRON otk	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	9977790	2R_9977790_SNP [dm3] 2R_14090285_SNP [dm6]	T	A	5.328e^-5	0.978	UPSTREAM CG42287 & 1 other INTRON Prosap
2R	9679289	2R_9679289_SNP [dm3] 2R_13791784_SNP [dm6]	T	G	5.403e^-5	0.978	UPSTREAM CR43811 INTERGENIC
2R	10011586	2R_10011586_SNP [dm3] 2R_14124081_SNP [dm6]	A	T	5.447e^-5	0.978	INTRON Prosap
2R	11943683	2R_11943683_SNP [dm3] 2R_16056178_SNP [dm6]	C	T	5.576e^-5	0.978	INTRON CG8405
3L	18957937	3L_18957937_SNP [dm3] 3L_18964837_SNP [dm6]	A	C	5.618e^-5	0.978	INTERGENIC
3L	18957938	3L_18957938_SNP [dm3] 3L_18964838_SNP [dm6]	T	A	5.618e^-5	0.978	INTERGENIC
X	9006430	X_9006430_SNP [dm3] X_9112397_SNP [dm6]	G	A	5.690e^-5	0.978	INTRON AP-1gamma
X	16947242	X_16947242_SNP [dm3] X_17053209_SNP [dm6]	A	G	5.698e^-5	0.978	INTRON CG45002
2L	15140673	2L_15140673_SNP [dm3] 2L_15140673_SNP [dm6]	C	T	5.824e^-5	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	5216153	3L_5216153_SNP [dm3] 3L_5223053_SNP [dm6]	T	A	5.909e^-5	0.978	INTRON shep
2L	6487290	2L_6487290_SNP [dm3] 2L_6487290_SNP [dm6]	A	G	5.925e^-5	0.978	UTR_3_PRIME DLP DOWNSTREAM KFase & 1 other
X	5204026	X_5204026_SNP [dm3] X_5309993_SNP [dm6]	A	T	6.187e^-5	0.978	DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl
2R	12145321	2R_12145321_SNP [dm3] 2R_16257816_SNP [dm6]	T	A	6.209e^-5	0.978	INTRON CngA
2R	9677957	2R_9677957_SNP [dm3] 2R_13790452_SNP [dm6]	A	T	6.225e^-5	0.978	INTERGENIC
3L	10836873	3L_10836873_SNP [dm3] 3L_10843773_SNP [dm6]	A	G	6.255e^-5	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	18957941	3L_18957941_SNP [dm3] 3L_18964841_SNP [dm6]	G	C	6.326e^-5	0.978	INTERGENIC
2R	16326263	2R_16326263_SNP [dm3] 2R_20438758_SNP [dm6]	G	A	6.363e^-5	0.978	INTRON CG12484
3R	26640139	3R_26640139_SNP [dm3] 3R_30814417_SNP [dm6]	G	C	6.401e^-5	0.978	INTRON cindr	TF binding site BDTNP1_TFBS_twi
2L	20415082	2L_20415082_SNP [dm3] 2L_20415082_SNP [dm6]	T	A	6.407e^-5	0.978	UPSTREAM CG10947 DOWNSTREAM CG10949 INTERGENIC
2R	19138966	2R_19138966_SNP [dm3] 2R_23251443_SNP [dm6]	A	C	6.416e^-5	0.978	INTERGENIC
3R	20807111	3R_20807111_SNP [dm3] 3R_24981389_SNP [dm6]	A	G	6.446e^-5	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	5536847	2L_5536847_SNP [dm3] 2L_5536847_SNP [dm6]	A	G	6.487e^-5	0.978	UPSTREAM tomb DOWNSTREAM CG14015 & 1 other INTERGENIC
2L	18820270	2L_18820270_SNP [dm3] 2L_18820270_SNP [dm6]	T	C	6.502e^-5	0.978	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
3L	21901406	3L_21901406_SNP [dm3] 3L_21908306_SNP [dm6]	A	G	6.756e^-5	0.978	INTRON mub
X	16947256	X_16947256_SNP [dm3] X_17053223_SNP [dm6]	C	A	6.898e^-5	0.978	INTRON CG45002
3L	12605189	3L_12605189_SNP [dm3] 3L_12612089_SNP [dm6]	G	T	6.906e^-5	0.978	INTRON caup
2R	3165442	2R_3165442_SNP [dm3] 2R_7277937_SNP [dm6]	T	C	6.970e^-5	0.978	UTR_5_PRIME Br140 UPSTREAM Incenp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Ubx
X	7547548	X_7547548_SNP [dm3] X_7653515_SNP [dm6]	C	T	6.989e^-5	0.978	INTRON ct
3L	2254163	3L_2254163_SNP [dm3] 3L_2254163_SNP [dm6]	G	A	7.024e^-5	0.978	INTRON CG1275	TF binding site mE1_TFBS_cad
2R	6679800	2R_6679800_SNP [dm3] 2R_10792295_SNP [dm6]	T	G	7.162e^-5	0.978	INTRON CG33144 & 1 other
3R	9702120	3R_9702120_SNP [dm3] 3R_13876398_SNP [dm6]	G	A	7.172e^-5	0.978	INTRON E5	TF binding site BDTNP1_TFBS_dl
3L	12643975	3L_12643975_SNP [dm3] 3L_12650875_SNP [dm6]	C	T	7.326e^-5	0.978	INTRON CR43431	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2R	9680269	2R_9680269_SNP [dm3] 2R_13792764_SNP [dm6]	T	A	7.341e^-5	0.978	DOWNSTREAM CR43811 INTERGENIC
X	16925189	X_16925189_SNP [dm3] X_17031156_SNP [dm6]	C	T	7.416e^-5	0.978	INTRON CG45002
2R	9764517	2R_9764517_SNP [dm3] 2R_13877012_SNP [dm6]	C	T	7.437e^-5	0.978	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26868621	3R_26868621_SNP [dm3] 3R_31042899_SNP [dm6]	T	C	7.462e^-5	0.978	INTRON CanA1
2R	20191583	2R_20191583_SNP [dm3] 2R_24304060_SNP [dm6]	C	G	7.488e^-5	0.978	INTERGENIC	regulatory region REDfly_CRMs
2R	9799529	2R_9799529_INS [dm3] 2R_13912024_INS [dm6]	G	GG	7.507e^-5	0.978	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9677994	2R_9677994_SNP [dm3] 2R_13790489_SNP [dm6]	T	A	7.554e^-5	0.978	INTERGENIC	TF binding site mE1_TFBS_cad
3R	13283483	3R_13283483_SNP [dm3] 3R_17457761_SNP [dm6]	C	T	7.580e^-5	0.978	UPSTREAM CG14330 INTERGENIC
3L	18957992	3L_18957992_SNP [dm3] 3L_18964892_SNP [dm6]	C	T	7.655e^-5	0.978	INTERGENIC
X	16947190	X_16947190_SNP [dm3] X_17053157_SNP [dm6]	G	T	7.698e^-5	0.978	INTRON CG45002
2L	20406775	2L_20406775_SNP [dm3] 2L_20406775_SNP [dm6]	C	T	7.727e^-5	0.978	INTRON CG10947
3R	11266015	3R_11266015_SNP [dm3] 3R_15440293_SNP [dm6]	A	T	7.735e^-5	0.978	INTRON Act88F	regulatory region REDfly_CRMs
2R	6689209	2R_6689209_SNP [dm3] 2R_10801704_SNP [dm6]	T	A	7.750e^-5	0.978	INTRON wde	TF binding site mE1_TFBS_cad
2R	14925232	2R_14925232_SNP [dm3] 2R_19037727_SNP [dm6]	T	A	7.781e^-5	0.978	INTERGENIC
2L	13058490	2L_13058490_SNP [dm3] 2L_13058490_SNP [dm6]	C	G	7.781e^-5	0.978	INTRON CG9932
3R	9702871	3R_9702871_SNP [dm3] 3R_13877149_SNP [dm6]	T	C	7.852e^-5	0.978	UTR_5_PRIME E5	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	20415841	2L_20415841_SNP [dm3] 2L_20415841_SNP [dm6]	G	A	7.914e^-5	0.978	SYNONYMOUS_CODING CG10949	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14386551	3L_14386551_SNP [dm3] 3L_14393451_SNP [dm6]	A	T	8.099e^-5	0.978	INTERGENIC
2R	9677979	2R_9677979_SNP [dm3] 2R_13790474_SNP [dm6]	T	A	8.123e^-5	0.978	INTERGENIC
2R	19138965	2R_19138965_SNP [dm3] 2R_23251442_SNP [dm6]	G	T	8.134e^-5	0.978	INTERGENIC
2R	9680600	2R_9680600_SNP [dm3] 2R_13793095_SNP [dm6]	G	T	8.139e^-5	0.978	DOWNSTREAM CR43811 INTERGENIC
3L	4828686	3L_4828686_SNP [dm3] 3L_4828686_SNP [dm6]	G	T	8.202e^-5	0.978	NON_SYNONYMOUS_CODING Aats-leu DOWNSTREAM CG13708
3L	4242277	3L_4242277_SNP [dm3] 3L_4242277_SNP [dm6]	T	C	8.202e^-5	0.978	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4242625	3L_4242625_SNP [dm3] 3L_4242625_SNP [dm6]	T	C	8.221e^-5	0.978	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	6388926	3L_6388926_SNP [dm3] 3L_6395826_SNP [dm6]	G	A	8.236e^-5	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17163256	2R_17163256_SNP [dm3] 2R_21275751_SNP [dm6]	G	A	8.237e^-5	0.978	INTRON Rgk3
3L	4242340	3L_4242340_SNP [dm3] 3L_4242340_SNP [dm6]	C	T	8.333e^-5	0.978	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	17649071	2R_17649071_SNP [dm3] 2R_21761566_SNP [dm6]	A	G	8.334e^-5	0.978	INTERGENIC
2R	6130934	2R_6130934_SNP [dm3] 2R_10243429_SNP [dm6]	G	A	8.368e^-5	0.978	SYNONYMOUS_CODING Hdc	TF binding site mE1_TFBS_cad
2R	9678025	2R_9678025_SNP [dm3] 2R_13790520_SNP [dm6]	T	A	8.414e^-5	0.978	INTERGENIC	TF binding site mE1_TFBS_cad
2R	1534413	2R_1534413_SNP [dm3] 2R_5646908_SNP [dm6]	T	C	8.488e^-5	0.978	INTRON CG11665
2R	9677883	2R_9677883_SNP [dm3] 2R_13790378_SNP [dm6]	A	T	8.489e^-5	0.978	INTERGENIC
3L	2254242	3L_2254242_SNP [dm3] 3L_2254242_SNP [dm6]	G	C	8.527e^-5	0.978	INTRON CG1275	TF binding site mE1_TFBS_cad
3R	11920319	3R_11920319_INS [dm3] 3R_16094597_INS [dm6]	T	TG	8.651e^-5	0.978	UPSTREAM Mhcl INTRON Mhcl
2R	14925238	2R_14925238_SNP [dm3] 2R_19037733_SNP [dm6]	G	C	8.663e^-5	0.978	INTERGENIC
X	17515032	X_17515032_SNP [dm3] X_17620999_SNP [dm6]	T	C	8.676e^-5	0.978	INTERGENIC
X	1213593	X_1213593_SNP [dm3] X_1319560_SNP [dm6]	T	C	8.712e^-5	0.978	INTRON DAAM
3L	3916871	3L_3916871_SNP [dm3] 3L_3916871_SNP [dm6]	A	G	8.771e^-5	0.978	INTRON Eip63F-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17426972	X_17426972_SNP [dm3] X_17532939_SNP [dm6]	C	T	8.776e^-5	0.978	SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	16897538	3L_16897538_SNP [dm3] 3L_16904438_SNP [dm6]	G	A	8.813e^-5	0.978	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	7702077	2L_7702077_SNP [dm3] 2L_7702077_SNP [dm6]	A	G	8.826e^-5	0.978	UPSTREAM Tep2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6487218	2L_6487218_SNP [dm3] 2L_6487218_SNP [dm6]	A	G	8.856e^-5	0.978	UTR_3_PRIME DLP DOWNSTREAM KFase & 1 other
3R	17735688	3R_17735688_SNP [dm3] 3R_21909966_SNP [dm6]	A	T	8.864e^-5	0.978	INTERGENIC
3L	18958040	3L_18958040_SNP [dm3] 3L_18964940_SNP [dm6]	T	C	8.909e^-5	0.978	INTERGENIC
2R	9675072	2R_9675072_SNP [dm3] 2R_13787567_SNP [dm6]	A	C	8.940e^-5	0.978	UTR_3_PRIME Cpr50Ca
3L	18958049	3L_18958049_SNP [dm3] 3L_18964949_SNP [dm6]	A	G	8.953e^-5	0.978	INTERGENIC
3R	4545445	3R_4545445_SNP [dm3] 3R_8719723_SNP [dm6]	C	T	9.003e^-5	0.978	INTRON CG8116 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14925369	2R_14925369_SNP [dm3] 2R_19037864_SNP [dm6]	C	A	9.047e^-5	0.978	INTERGENIC
2R	16317394	2R_16317394_SNP [dm3] 2R_20429889_SNP [dm6]	A	G	9.072e^-5	0.978	INTRON CG12484
2R	4132324	2R_4132324_SNP [dm3] 2R_8244819_SNP [dm6]	C	T	9.104e^-5	0.978	UPSTREAM CR44446 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_z
2R	6130922	2R_6130922_SNP [dm3] 2R_10243417_SNP [dm6]	T	C	9.109e^-5	0.978	SYNONYMOUS_CODING Hdc	TF binding site mE1_TFBS_cad
2L	663580	2L_663580_SNP [dm3] 2L_663580_SNP [dm6]	G	C	9.303e^-5	0.978	INTRON ds
X	20824995	X_20824995_INS [dm3] X_20953968_INS [dm6]	A	AAAAAA	9.458e^-5	0.978	INTERGENIC
2L	7843438	2L_7843438_SNP [dm3] 2L_7843438_SNP [dm6]	T	C	9.564e^-5	0.978	INTERGENIC
3L	4242612	3L_4242612_SNP [dm3] 3L_4242612_SNP [dm6]	G	C	9.579e^-5	0.978	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	18957971	3L_18957971_SNP [dm3] 3L_18964871_SNP [dm6]	C	G	9.631e^-5	0.978	INTERGENIC
X	6642200	X_6642200_SNP [dm3] X_6748167_SNP [dm6]	T	C	9.725e^-5	0.978	UPSTREAM CR44964 INTRON CG14439
2R	7534558	2R_7534558_SNP [dm3] 2R_11647053_SNP [dm6]	A	C	9.728e^-5	0.978	UPSTREAM CG9003 INTRON CG9003	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3775818	3L_3775818_SNP [dm3] 3L_3775818_SNP [dm6]	C	G	9.774e^-5	0.978	INTRON CG32264
3R	8148641	3R_8148641_SNP [dm3] 3R_12322919_SNP [dm6]	A	G	9.785e^-5	0.978	UPSTREAM CG10013 & 1 other INTERGENIC
3L	10836909	3L_10836909_SNP [dm3] 3L_10843809_SNP [dm6]	T	C	9.814e^-5	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	17150308	3L_17150308_SNP [dm3] 3L_17157208_SNP [dm6]	C	G	9.888e^-5	0.978	INTRON Rbp6
2L	15194567	2L_15194567_SNP [dm3] 2L_15194567_SNP [dm6]	T	C	1.007e^-4	0.978	INTRON CG4168
X	1221985	X_1221985_SNP [dm3] X_1327952_SNP [dm6]	G	A	1.007e^-4	0.978	SYNONYMOUS_CODING fs_1_N
2L	15225775	2L_15225775_SNP [dm3] 2L_15225775_SNP [dm6]	T	C	1.009e^-4	0.978	INTERGENIC
2R	18864961	2R_18864961_INS [dm3] 2R_22977438_INS [dm6]	T	TAT	1.009e^-4	0.978	INTERGENIC
2L	945241	2L_945241_SNP [dm3] 2L_945241_SNP [dm6]	T	C	1.015e^-4	0.978	INTRON CG4341
2R	19119464	2R_19119464_SNP [dm3] 2R_23231941_SNP [dm6]	G	A	1.032e^-4	0.978	UPSTREAM CG3092 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	6652736	2L_6652736_SNP [dm3] 2L_6652736_SNP [dm6]	C	A	1.034e^-4	0.978	INTRON Tango1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10431187	2L_10431187_SNP [dm3] 2L_10431187_SNP [dm6]	A	T	1.040e^-4	0.978	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	4545451	3R_4545451_SNP [dm3] 3R_8719729_SNP [dm6]	T	C	1.051e^-4	0.978	INTRON CG8116 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3243348	X_3243348_SNP [dm3] X_3349315_SNP [dm6]	C	T	1.060e^-4	0.978	UPSTREAM CR44886 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6130856	2R_6130856_SNP [dm3] 2R_10243351_SNP [dm6]	C	T	1.074e^-4	0.978	SYNONYMOUS_CODING Hdc	TF binding site mE1_TFBS_cad
X	18964592	X_18964592_SNP [dm3] X_19070559_SNP [dm6]	T	C	1.084e^-4	0.978	INTERGENIC
3R	10368786	3R_10368786_SNP [dm3] 3R_14543064_SNP [dm6]	A	C	1.105e^-4	0.978	INTRON Pde6
2L	4051252	2L_4051252_SNP [dm3] 2L_4051252_SNP [dm6]	T	A	1.107e^-4	0.978	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1213768	X_1213768_SNP [dm3] X_1319735_SNP [dm6]	A	G	1.117e^-4	0.978	INTRON DAAM
2R	13739049	2R_13739049_SNP [dm3] 2R_17851544_SNP [dm6]	G	T	1.128e^-4	0.978	INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
X	16051787	X_16051787_INS [dm3] X_16157754_INS [dm6]	T	TGAT	1.133e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12075996	2R_12075996_SNP [dm3] 2R_16188491_SNP [dm6]	C	T	1.157e^-4	0.978	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11189752	2R_11189752_SNP [dm3] 2R_15302247_SNP [dm6]	G	C	1.158e^-4	0.978	INTRON Trpm	TF binding site mE1_TFBS_inv
2R	10033162	2R_10033162_SNP [dm3] 2R_14145657_SNP [dm6]	T	A	1.159e^-4	0.978	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	14792009	2R_14792009_SNP [dm3] 2R_18904504_SNP [dm6]	T	G	1.167e^-4	0.978	INTRON sano	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15570085	2R_15570085_SNP [dm3] 2R_19682580_SNP [dm6]	A	C	1.168e^-4	0.978	UTR_3_PRIME CG34198 DOWNSTREAM CR44505	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16946978	X_16946978_SNP [dm3] X_17052945_SNP [dm6]	G	A	1.175e^-4	0.978	INTRON CG45002
2R	9799339	2R_9799339_INS [dm3] 2R_13911834_INS [dm6]	A	AACA	1.179e^-4	0.978	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	6358668	3L_6358668_SNP [dm3] 3L_6365568_SNP [dm6]	C	T	1.183e^-4	0.978	INTERGENIC
3L	12643982	3L_12643982_SNP [dm3] 3L_12650882_SNP [dm6]	T	C	1.186e^-4	0.978	INTRON CR43431	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2R	12073825	2R_12073825_DEL [dm3] 2R_16186320_DEL [dm6]	CCTCAACGACGC...	A	1.190e^-4	0.978	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9222785	2L_9222785_SNP [dm3] 2L_9222785_SNP [dm6]	C	G	1.202e^-4	0.978	INTRON tai
3L	4744157	3L_4744157_SNP [dm3] 3L_4744157_SNP [dm6]	C	T	1.208e^-4	0.978	INTRON RhoGEF64C
3L	7266474	3L_7266474_SNP [dm3] 3L_7273374_SNP [dm6]	G	A	1.208e^-4	0.978	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
2L	7011957	2L_7011957_SNP [dm3] 2L_7011957_SNP [dm6]	A	C	1.221e^-4	0.978	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
X	16611761	X_16611761_SNP [dm3] X_16717728_SNP [dm6]	C	T	1.225e^-4	0.978	INTRON CG34325
3R	27448808	3R_27448808_SNP [dm3] 3R_31623086_SNP [dm6]	G	A	1.225e^-4	0.978	DOWNSTREAM pasha INTRON kek6
2R	14456869	2R_14456869_SNP [dm3] 2R_18569364_SNP [dm6]	C	G	1.228e^-4	0.978	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10033113	2R_10033113_SNP [dm3] 2R_14145608_SNP [dm6]	C	A	1.228e^-4	0.978	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	14676242	2R_14676242_SNP [dm3] 2R_18788737_SNP [dm6]	T	C	1.231e^-4	0.978	INTRON CG15080
2L	7223743	2L_7223743_SNP [dm3] 2L_7223743_SNP [dm6]	A	G	1.232e^-4	0.978	UPSTREAM ico DOWNSTREAM Ndae1 INTRON Ndae1	TF binding site mE1_TFBS_zfh1
2R	12277047	2R_12277047_SNP [dm3] 2R_16389542_SNP [dm6]	C	T	1.247e^-4	0.978	INTRON Sema-2b
2R	12073840	2R_12073840_SNP [dm3] 2R_16186335_SNP [dm6]	T	A	1.248e^-4	0.978	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	485008	3L_485008_SNP [dm3] 3L_485008_SNP [dm6]	A	G	1.256e^-4	0.978	INTRON klar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12145080	2R_12145080_DEL [dm3] 2R_16257575_DEL [dm6]	CTCTTCCCG	C	1.257e^-4	0.978	INTRON CngA
2R	18572946	2R_18572946_SNP [dm3] 2R_22685441_SNP [dm6]	C	T	1.271e^-4	0.978	UTR_3_PRIME ppa DOWNSTREAM ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	4994383	2L_4994383_SNP [dm3] 2L_4994383_SNP [dm6]	A	G	1.279e^-4	0.978	SYNONYMOUS_CODING Rtnl1
3R	8138927	3R_8138927_SNP [dm3] 3R_12313205_SNP [dm6]	T	G	1.291e^-4	0.978	DOWNSTREAM CG4066 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1219925	X_1219925_SNP [dm3] X_1325892_SNP [dm6]	T	G	1.297e^-4	0.978	NON_SYNONYMOUS_CODING fs_1_N	TF binding site mE1_TFBS_chinmo
X	9268053	X_9268053_SNP [dm3] X_9374020_SNP [dm6]	T	A	1.306e^-4	0.978	INTRON mgl
2R	7123052	2R_7123052_SNP [dm3] 2R_11235547_SNP [dm6]	C	T	1.318e^-4	0.978	SYNONYMOUS_CODING CG13227 UPSTREAM CG34223 DOWNSTREAM CG13217	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10033124	2R_10033124_SNP [dm3] 2R_14145619_SNP [dm6]	T	C	1.321e^-4	0.978	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	4881532	2L_4881532_SNP [dm3] 2L_4881532_SNP [dm6]	C	T	1.324e^-4	0.978	SYNONYMOUS_CODING Cf2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21707051	3R_21707051_SNP [dm3] 3R_25881329_SNP [dm6]	C	T	1.325e^-4	0.978	UTR_5_PRIME Tsp96F UPSTREAM SppL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13862874	2R_13862874_SNP [dm3] 2R_17975369_SNP [dm6]	T	A	1.325e^-4	0.978	UTR_3_PRIME dpr13
2R	9675690	2R_9675690_DEL [dm3] 2R_13788185_DEL [dm6]	TAT	T	1.338e^-4	0.978	DOWNSTREAM Cpr50Ca INTERGENIC
2R	20191666	2R_20191666_SNP [dm3] 2R_24304143_SNP [dm6]	C	A	1.345e^-4	0.978	INTERGENIC	regulatory region REDfly_CRMs
3R	4991472	3R_4991472_SNP [dm3] 3R_9165750_SNP [dm6]	G	A	1.351e^-4	0.978	INTRON pum
2R	14925181	2R_14925181_SNP [dm3] 2R_19037676_SNP [dm6]	G	T	1.355e^-4	0.978	INTERGENIC
3L	6388981	3L_6388981_SNP [dm3] 3L_6395881_SNP [dm6]	C	T	1.369e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2545655	3L_2545655_SNP [dm3] 3L_2545655_SNP [dm6]	C	A	1.371e^-4	0.978	INTRON Spn
3R	8521991	3R_8521991_SNP [dm3] 3R_12696269_SNP [dm6]	G	A	1.372e^-4	0.978	SYNONYMOUS_CODING NijC
2R	8898174	2R_8898174_SNP [dm3] 2R_13010669_SNP [dm6]	C	T	1.379e^-4	0.978	INTERGENIC
3L	17156863	3L_17156863_SNP [dm3] 3L_17163763_SNP [dm6]	T	C	1.379e^-4	0.978	INTRON Rbp6
3R	13197656	3R_13197656_SNP [dm3] 3R_17371934_SNP [dm6]	C	G	1.416e^-4	0.978	UPSTREAM CR44256 INTERGENIC
3R	25202115	3R_25202115_SNP [dm3] 3R_29376393_SNP [dm6]	A	T	1.426e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7281732	2L_7281732_SNP [dm3] 2L_7281732_SNP [dm6]	C	T	1.428e^-4	0.978	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	10313733	3R_10313733_SNP [dm3] 3R_14488011_SNP [dm6]	G	T	1.429e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	20824984	X_20824984_SNP [dm3] X_20953957_SNP [dm6]	T	C	1.429e^-4	0.978	INTERGENIC
3L	13222267	3L_13222267_SNP [dm3] 3L_13229167_SNP [dm6]	A	G	1.432e^-4	0.978	INTRON caps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	18807088	2L_18807088_SNP [dm3] 2L_18807088_SNP [dm6]	C	T	1.435e^-4	0.978	UPSTREAM CR43817 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3724692	2R_3724692_SNP [dm3] 2R_7837187_SNP [dm6]	G	C	1.457e^-4	0.978	INTRON Dgk	TF binding site mE1_TFBS_chinmo
X	16947103	X_16947103_DEL [dm3] X_17053070_DEL [dm6]	TTAGTTTTAAATCA...	T	1.472e^-4	0.978	INTRON CG45002
3R	23610193	3R_23610193_SNP [dm3] 3R_27784471_SNP [dm6]	A	C	1.476e^-4	0.978	INTRON CG34353
2L	14574598	2L_14574598_SNP [dm3] 2L_14574598_SNP [dm6]	A	C	1.481e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9891087	2L_9891087_SNP [dm3] 2L_9891087_SNP [dm6]	C	G	1.483e^-4	0.978	UPSTREAM CG34183 DOWNSTREAM FKBP59 & 1 other INTRON CG4537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	9891097	2L_9891097_SNP [dm3] 2L_9891097_SNP [dm6]	C	A	1.483e^-4	0.978	UPSTREAM CG34183 DOWNSTREAM FKBP59 & 1 other INTRON CG4537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	9891118	2L_9891118_SNP [dm3] 2L_9891118_SNP [dm6]	T	C	1.483e^-4	0.978	UPSTREAM CG34183 DOWNSTREAM FKBP59 & 1 other INTRON CG4537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	13861685	2R_13861685_SNP [dm3] 2R_17974180_SNP [dm6]	C	A	1.483e^-4	0.978	DOWNSTREAM dpr13 INTERGENIC
3R	26868625	3R_26868625_SNP [dm3] 3R_31042903_SNP [dm6]	T	A	1.495e^-4	0.978	INTRON CanA1
2R	9966984	2R_9966984_SNP [dm3] 2R_14079479_SNP [dm6]	T	C	1.498e^-4	0.978	INTRON Prosap
X	16602183	X_16602183_SNP [dm3] X_16708150_SNP [dm6]	T	C	1.502e^-4	0.978	INTRON CG4678
2R	8620599	2R_8620599_SNP [dm3] 2R_12733094_SNP [dm6]	G	A	1.506e^-4	0.978	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9890842	2L_9890842_SNP [dm3] 2L_9890842_SNP [dm6]	A	T	1.513e^-4	0.978	UPSTREAM CG4537 & 1 other DOWNSTREAM FKBP59 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	9677887	2R_9677887_DEL [dm3] 2R_13790382_DEL [dm6]	TCCTTAGTATGAAGTACCTC...	T	1.522e^-4	0.978	INTERGENIC
2R	18556415	2R_18556415_SNP [dm3] 2R_22668910_SNP [dm6]	C	T	1.524e^-4	0.978	UPSTREAM CG13516 DOWNSTREAM CG30273 & 1 other INTERGENIC
2R	10060129	2R_10060129_SNP [dm3] 2R_14172624_SNP [dm6]	A	G	1.535e^-4	0.978	NON_SYNONYMOUS_CODING CG8331 DOWNSTREAM mRpS16	TF binding site mE1_TFBS_cad
2L	20418995	2L_20418995_SNP [dm3] 2L_20418995_SNP [dm6]	C	A	1.535e^-4	0.978	UPSTREAM snoRNA:Psi18S-640b & 6 others DOWNSTREAM snoRNA:Psi18S-525a & 3 others INTRON Arpc2	TF binding site mE1_TFBS_zfh1
2R	19138971	2R_19138971_INS [dm3] 2R_23251448_INS [dm6]	G	GTTG	1.537e^-4	0.978	INTERGENIC
X	16947214	X_16947214_SNP [dm3] X_17053181_SNP [dm6]	G	A	1.538e^-4	0.978	INTRON CG45002
2L	9908155	2L_9908155_SNP [dm3] 2L_9908155_SNP [dm6]	A	G	1.544e^-4	0.978	DOWNSTREAM Etl1 INTRON CG13124	TF binding site BDTNP1_TFBS_dl
3R	13161573	3R_13161573_SNP [dm3] 3R_17335851_SNP [dm6]	C	T	1.548e^-4	0.978	INTRON beat-IIa
2R	14456859	2R_14456859_SNP [dm3] 2R_18569354_SNP [dm6]	C	T	1.556e^-4	0.978	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	17269577	X_17269577_SNP [dm3] X_17375544_SNP [dm6]	A	T	1.561e^-4	0.978	INTERGENIC
3R	26867953	3R_26867953_SNP [dm3] 3R_31042231_SNP [dm6]	T	G	1.562e^-4	0.978	INTRON CanA1	TF binding site BDTNP1_TFBS_twi
2R	12075919	2R_12075919_SNP [dm3] 2R_16188414_SNP [dm6]	A	G	1.582e^-4	0.978	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9890980	2L_9890980_SNP [dm3] 2L_9890980_SNP [dm6]	C	T	1.584e^-4	0.978	NON_SYNONYMOUS_CODING CG4537 UPSTREAM CG34183 DOWNSTREAM FKBP59 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	4912376	2R_4912376_SNP [dm3] 2R_9024871_SNP [dm6]	C	G	1.585e^-4	0.978	INTRON CG8170	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9795739	2R_9795739_SNP [dm3] 2R_13908234_SNP [dm6]	G	A	1.604e^-4	0.978	START_GAINED shot UTR_5_PRIME shot INTRON shot	TF binding site mE1_TFBS_cad
X	15204317	X_15204317_SNP [dm3] X_15310284_SNP [dm6]	T	C	1.606e^-4	0.978	INTRON gce
2R	6793091	2R_6793091_SNP [dm3] 2R_10905586_SNP [dm6]	C	T	1.610e^-4	0.978	DOWNSTREAM CG12943 INTERGENIC	TF binding site mE1_TFBS_HSA
X	17933312	X_17933312_SNP [dm3] X_18039279_SNP [dm6]	G	A	1.622e^-4	0.978	START_GAINED Sh UTR_5_PRIME Sh
2R	18572580	2R_18572580_SNP [dm3] 2R_22685075_SNP [dm6]	G	A	1.623e^-4	0.978	UTR_3_PRIME ppa DOWNSTREAM ppa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15282821	2R_15282821_SNP [dm3] 2R_19395316_SNP [dm6]	G	A	1.626e^-4	0.978	DOWNSTREAM cer INTRON SdhA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	19674031	2L_19674031_SNP [dm3] 2L_19674031_SNP [dm6]	C	A	1.627e^-4	0.978	INTRON Lar
2L	1263299	2L_1263299_SNP [dm3] 2L_1263299_SNP [dm6]	A	T	1.632e^-4	0.978	INTRON robo3
X	20684373	X_20684373_SNP [dm3] X_20813346_SNP [dm6]	C	T	1.641e^-4	0.978	INTRON shakB
3L	7769451	3L_7769451_SNP [dm3] 3L_7776351_SNP [dm6]	A	T	1.648e^-4	0.978	UPSTREAM Clk DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
X	11873309	X_11873309_SNP [dm3] X_11979276_SNP [dm6]	T	G	1.658e^-4	0.978	INTRON cac
2R	13485698	2R_13485698_SNP [dm3] 2R_17598193_SNP [dm6]	G	T	1.665e^-4	0.978	DOWNSTREAM CG11423 & 1 other INTRON lack	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1221320	X_1221320_SNP [dm3] X_1327287_SNP [dm6]	G	A	1.669e^-4	0.978	INTRON fs_1_N
3L	7748843	3L_7748843_SNP [dm3] 3L_7755743_SNP [dm6]	G	A	1.673e^-4	0.978	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
3R	26865824	3R_26865824_SNP [dm3] 3R_31040102_SNP [dm6]	T	G	1.679e^-4	0.978	START_GAINED CanA1 UTR_5_PRIME CanA1	TF binding site mE1_TFBS_sbb
X	6535181	X_6535181_SNP [dm3] X_6641148_SNP [dm6]	A	T	1.685e^-4	0.978	INTRON pigs
3R	8151742	3R_8151742_SNP [dm3] 3R_12326020_SNP [dm6]	G	A	1.687e^-4	0.978	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	5101172	2L_5101172_INS [dm3] 2L_5101172_INS [dm6]	A	AC	1.689e^-4	0.978	UPSTREAM CG8680 INTRON Msp300
X	10751624	X_10751624_SNP [dm3] X_10857591_SNP [dm6]	G	A	1.693e^-4	0.978	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	9677881	2R_9677881_SNP [dm3] 2R_13790376_SNP [dm6]	G	A	1.696e^-4	0.978	INTERGENIC
2R	9931296	2R_9931296_SNP [dm3] 2R_14043791_SNP [dm6]	C	T	1.697e^-4	0.978	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	6536316	2R_6536316_SNP [dm3] 2R_10648811_SNP [dm6]	C	A	1.698e^-4	0.978	UPSTREAM CG12934 DOWNSTREAM Elp2 INTERGENIC
2L	5718112	2L_5718112_SNP [dm3] 2L_5718112_SNP [dm6]	T	A	1.699e^-4	0.978	DOWNSTREAM CG11149 & 1 other INTERGENIC
X	7908727	X_7908727_SNP [dm3] X_8014694_SNP [dm6]	A	C	1.709e^-4	0.978	INTRON Tbh
2R	10052504	2R_10052504_SNP [dm3] 2R_14164999_SNP [dm6]	T	G	1.715e^-4	0.978	UPSTREAM CG8323 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11943627	2R_11943627_SNP [dm3] 2R_16056122_SNP [dm6]	G	A	1.727e^-4	0.978	INTRON CG8405
X	16946904	X_16946904_SNP [dm3] X_17052871_SNP [dm6]	G	T	1.734e^-4	0.978	INTRON CG45002
2L	21908284	2L_21908284_SNP [dm3] 2L_21908284_SNP [dm6]	G	T	1.735e^-4	0.978	UTR_3_PRIME CG1428	TF binding site mE1_TFBS_cad
2R	10033073	2R_10033073_SNP [dm3] 2R_14145568_SNP [dm6]	C	T	1.740e^-4	0.978	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4009382	2L_4009382_SNP [dm3] 2L_4009382_SNP [dm6]	A	G	1.755e^-4	0.978	DOWNSTREAM CG43774 INTERGENIC
2R	9678044	2R_9678044_SNP [dm3] 2R_13790539_SNP [dm6]	T	A	1.758e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14791611	2R_14791611_SNP [dm3] 2R_18904106_SNP [dm6]	G	A	1.768e^-4	0.978	INTRON sano
3R	9702489	3R_9702489_SNP [dm3] 3R_13876767_SNP [dm6]	C	G	1.771e^-4	0.978	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	6110949	2R_6110949_INS [dm3] 2R_10223444_INS [dm6]	G	GG	1.775e^-4	0.978	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
2L	14071225	2L_14071225_SNP [dm3] 2L_14071225_SNP [dm6]	A	G	1.776e^-4	0.978	INTRON nAChRalpha5
2L	19367417	2L_19367417_DEL [dm3] 2L_19367417_DEL [dm6]	TC	T	1.788e^-4	0.978	INTERGENIC
2R	14925206	2R_14925206_SNP [dm3] 2R_19037701_SNP [dm6]	G	T	1.791e^-4	0.978	INTERGENIC
2R	18556536	2R_18556536_SNP [dm3] 2R_22669031_SNP [dm6]	A	G	1.812e^-4	0.978	UPSTREAM CG13516 DOWNSTREAM CG30269 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21710535	3R_21710535_SNP [dm3] 3R_25884813_SNP [dm6]	A	C	1.815e^-4	0.978	INTRON SppL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17300314	2L_17300314_SNP [dm3] 2L_17300314_SNP [dm6]	C	G	1.816e^-4	0.978	INTERGENIC
2R	15540064	2R_15540064_SNP [dm3] 2R_19652559_SNP [dm6]	C	G	1.820e^-4	0.978	UPSTREAM CR44213 INTRON Ir56e EXON CR44212
X	15295871	X_15295871_SNP [dm3] X_15401838_SNP [dm6]	C	T	1.824e^-4	0.978	INTRON Cngl	TF binding site BDTNP1_TFBS_dl
2R	13485788	2R_13485788_SNP [dm3] 2R_17598283_SNP [dm6]	C	T	1.826e^-4	0.978	DOWNSTREAM CG11423 & 1 other INTRON lack	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10033080	2R_10033080_SNP [dm3] 2R_14145575_SNP [dm6]	G	C	1.829e^-4	0.978	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	7596388	2R_7596388_SNP [dm3] 2R_11708883_SNP [dm6]	T	C	1.844e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	19367425	2L_19367425_SNP [dm3] 2L_19367425_SNP [dm6]	C	G	1.849e^-4	0.978	INTERGENIC
2L	4132014	2L_4132014_SNP [dm3] 2L_4132014_SNP [dm6]	C	T	1.851e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18556539	2R_18556539_SNP [dm3] 2R_22669034_SNP [dm6]	A	G	1.854e^-4	0.978	UPSTREAM CG13516 DOWNSTREAM CG30269 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	20867610	3L_20867610_SNP [dm3] 3L_20874510_SNP [dm6]	C	A	1.858e^-4	0.978	INTRON CG32432
3L	10838588	3L_10838588_SNP [dm3] 3L_10845488_SNP [dm6]	G	A	1.865e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8561060	2R_8561060_SNP [dm3] 2R_12673555_SNP [dm6]	G	A	1.878e^-4	0.978	INTRON CG42708	TF binding site mE1_TFBS_cad
2L	19688051	2L_19688051_SNP [dm3] 2L_19688051_SNP [dm6]	A	G	1.880e^-4	0.978	INTRON Lar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20807100	3R_20807100_INS [dm3] 3R_24981378_INS [dm6]	G	GG	1.894e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	10699635	3L_10699635_SNP [dm3] 3L_10706535_SNP [dm6]	A	C	1.899e^-4	0.978	INTERGENIC
2R	14925230	2R_14925230_SNP [dm3] 2R_19037725_SNP [dm6]	A	G	1.904e^-4	0.978	INTERGENIC
2R	10033118	2R_10033118_SNP [dm3] 2R_14145613_SNP [dm6]	T	G	1.907e^-4	0.978	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	8148484	3R_8148484_SNP [dm3] 3R_12322762_SNP [dm6]	G	T	1.907e^-4	0.978	UPSTREAM CG10013 & 1 other INTERGENIC
X	6451852	X_6451852_SNP [dm3] X_6557819_SNP [dm6]	G	C	1.908e^-4	0.978	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	17527297	3L_17527297_SNP [dm3] 3L_17534197_SNP [dm6]	T	C	1.912e^-4	0.978	INTRON Nedd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14925224	2R_14925224_SNP [dm3] 2R_19037719_SNP [dm6]	G	T	1.924e^-4	0.978	INTERGENIC
2R	8561054	2R_8561054_SNP [dm3] 2R_12673549_SNP [dm6]	A	C	1.936e^-4	0.978	INTRON CG42708	TF binding site mE1_TFBS_cad
3L	11515743	3L_11515743_SNP [dm3] 3L_11522643_SNP [dm6]	A	G	1.940e^-4	0.978	UTR_5_PRIME CG11714 DOWNSTREAM Mob2
2R	18978735	2R_18978735_SNP [dm3] 2R_23091212_SNP [dm6]	T	G	1.946e^-4	0.978	INTRON CG9876	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	2280705	3L_2280705_SNP [dm3] 3L_2280705_SNP [dm6]	T	C	1.947e^-4	0.978	INTERGENIC
2R	13485704	2R_13485704_SNP [dm3] 2R_17598199_SNP [dm6]	A	T	1.950e^-4	0.978	DOWNSTREAM CG11423 & 1 other INTRON lack	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6388942	3L_6388942_SNP [dm3] 3L_6395842_SNP [dm6]	G	A	1.952e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14925202	2R_14925202_SNP [dm3] 2R_19037697_SNP [dm6]	A	G	1.964e^-4	0.978	INTERGENIC
3L	18958052	3L_18958052_SNP [dm3] 3L_18964952_SNP [dm6]	A	G	1.979e^-4	0.978	INTERGENIC
2L	4131966	2L_4131966_SNP [dm3] 2L_4131966_SNP [dm6]	G	T	1.982e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4799922	2L_4799922_SNP [dm3] 2L_4799922_SNP [dm6]	G	A	1.988e^-4	0.978	INTRON Clect27	TF binding site mE1_TFBS_cad
2R	9675888	2R_9675888_SNP [dm3] 2R_13788383_SNP [dm6]	G	A	1.993e^-4	0.978	DOWNSTREAM Cpr50Ca INTERGENIC
3R	13418023	3R_13418023_SNP [dm3] 3R_17592301_SNP [dm6]	A	G	2.002e^-4	0.978	INTERGENIC
2R	10066676	2R_10066676_SNP [dm3] 2R_14179171_SNP [dm6]	G	T	2.006e^-4	0.978	SYNONYMOUS_CODING cg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19919068	3R_19919068_SNP [dm3] 3R_24093346_SNP [dm6]	G	A	2.015e^-4	0.978	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15145961	3R_15145961_SNP [dm3] 3R_19320239_SNP [dm6]	G	A	2.022e^-4	0.978	INTRON Dl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9830862	2L_9830862_SNP [dm3] 2L_9830862_SNP [dm6]	C	A	2.025e^-4	0.978	INTRON nAChRalpha6
2L	665014	2L_665014_SNP [dm3] 2L_665014_SNP [dm6]	G	A	2.027e^-4	0.978	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4525262	X_4525262_SNP [dm3] X_4631229_SNP [dm6]	C	T	2.031e^-4	0.978	UTR_3_PRIME CG12179 UPSTREAM CG12184 DOWNSTREAM CG12179	transposable element FlyBase
X	20826251	X_20826251_SNP [dm3] X_20955224_SNP [dm6]	C	T	2.032e^-4	0.978	INTERGENIC
3L	11173194	3L_11173194_SNP [dm3] 3L_11180094_SNP [dm6]	A	G	2.033e^-4	0.978	INTRON GlcAT-P
3L	16343226	3L_16343226_SNP [dm3] 3L_16350126_SNP [dm6]	C	T	2.035e^-4	0.978	NON_SYNONYMOUS_CODING CG4925 DOWNSTREAM tRNA:CR32357
2L	19688041	2L_19688041_SNP [dm3] 2L_19688041_SNP [dm6]	A	T	2.043e^-4	0.978	INTRON Lar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19688046	2L_19688046_SNP [dm3] 2L_19688046_SNP [dm6]	C	T	2.043e^-4	0.978	INTRON Lar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19688048	2L_19688048_SNP [dm3] 2L_19688048_SNP [dm6]	G	T	2.043e^-4	0.978	INTRON Lar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12520293	3L_12520293_SNP [dm3] 3L_12527193_SNP [dm6]	A	T	2.049e^-4	0.978	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26866632	3R_26866632_SNP [dm3] 3R_31040910_SNP [dm6]	A	G	2.053e^-4	0.978	INTRON CanA1
3L	10767859	3L_10767859_SNP [dm3] 3L_10774759_SNP [dm6]	A	G	2.060e^-4	0.978	INTERGENIC
3R	13193792	3R_13193792_SNP [dm3] 3R_17368070_SNP [dm6]	T	C	2.078e^-4	0.978	INTERGENIC
3L	18958057	3L_18958057_SNP [dm3] 3L_18964957_SNP [dm6]	T	A	2.081e^-4	0.978	INTERGENIC
2R	3165301	2R_3165301_SNP [dm3] 2R_7277796_SNP [dm6]	G	A	2.083e^-4	0.978	SYNONYMOUS_CODING Br140 UPSTREAM Incenp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17649105	2R_17649105_SNP [dm3] 2R_21761600_SNP [dm6]	A	G	2.091e^-4	0.978	INTERGENIC
2R	7900869	2R_7900869_SNP [dm3] 2R_12013364_SNP [dm6]	T	G	2.099e^-4	0.978	INTRON otk	TF binding site mE1_TFBS_Kr
2L	10840020	2L_10840020_SNP [dm3] 2L_10840020_SNP [dm6]	G	A	2.110e^-4	0.978	DOWNSTREAM mir-4987 INTRON CG6700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10836696	3L_10836696_INS [dm3] 3L_10843596_INS [dm6]	C	CAAGTC	2.127e^-4	0.978	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	16947018	X_16947018_DEL [dm3] X_17052985_DEL [dm6]	TTGTAATATATTATATATAT...	GG	2.127e^-4	0.978	INTRON CG45002
2R	9976701	2R_9976701_SNP [dm3] 2R_14089196_SNP [dm6]	C	A	2.128e^-4	0.978	INTRON Prosap
2L	9830863	2L_9830863_SNP [dm3] 2L_9830863_SNP [dm6]	C	A	2.128e^-4	0.978	INTRON nAChRalpha6
3R	26490041	3R_26490041_SNP [dm3] 3R_30664319_SNP [dm6]	G	T	2.130e^-4	0.978	UPSTREAM CR45191 INTERGENIC
X	16279824	X_16279824_SNP [dm3] X_16385791_SNP [dm6]	C	T	2.133e^-4	0.978	UPSTREAM CG9992 & 1 other INTRON CG4239	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	1193468	2R_1193468_SNP [dm3] 2R_5305963_SNP [dm6]	G	A	2.147e^-4	0.978	INTERGENIC
X	17269599	X_17269599_SNP [dm3] X_17375566_SNP [dm6]	A	G	2.159e^-4	0.978	INTERGENIC
3L	7177636	3L_7177636_SNP [dm3] 3L_7184536_SNP [dm6]	C	G	2.160e^-4	0.978	INTRON Dscam2
X	18044915	X_18044915_SNP [dm3] X_18150882_SNP [dm6]	G	A	2.166e^-4	0.978	INTERGENIC
3R	10313668	3R_10313668_SNP [dm3] 3R_14487946_SNP [dm6]	T	C	2.167e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12627316	2R_12627316_SNP [dm3] 2R_16739811_SNP [dm6]	T	A	2.179e^-4	0.978	INTERGENIC
2R	19390250	2R_19390250_SNP [dm3] 2R_23502727_SNP [dm6]	C	T	2.190e^-4	0.978	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
X	13170373	X_13170373_INS [dm3] X_13276340_INS [dm6]	T	TATGT	2.191e^-4	0.978	INTRON HDAC4
2L	5531558	2L_5531558_SNP [dm3] 2L_5531558_SNP [dm6]	T	A	2.199e^-4	0.978	NON_SYNONYMOUS_CODING CG7277 DOWNSTREAM CG31915 INTRON Cap-D3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4912369	2R_4912369_SNP [dm3] 2R_9024864_SNP [dm6]	A	C	2.200e^-4	0.978	INTRON CG8170	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6126570	X_6126570_SNP [dm3] X_6232537_SNP [dm6]	A	T	2.204e^-4	0.978	UTR_3_PRIME CG14446
3R	10358501	3R_10358501_SNP [dm3] 3R_14532779_SNP [dm6]	A	T	2.206e^-4	0.978	INTRON Pde6
3L	4744145	3L_4744145_SNP [dm3] 3L_4744145_SNP [dm6]	C	T	2.207e^-4	0.978	INTRON RhoGEF64C
2R	14925225	2R_14925225_SNP [dm3] 2R_19037720_SNP [dm6]	A	G	2.207e^-4	0.978	INTERGENIC
3R	10363949	3R_10363949_SNP [dm3] 3R_14538227_SNP [dm6]	A	T	2.208e^-4	0.978	INTRON Pde6
3L	2649493	3L_2649493_SNP [dm3] 3L_2649493_SNP [dm6]	C	T	2.210e^-4	0.978	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
3L	1910277	3L_1910277_SNP [dm3] 3L_1910277_SNP [dm6]	G	A	2.211e^-4	0.978	UPSTREAM CG1887 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	4892570	2L_4892570_SNP [dm3] 2L_4892570_SNP [dm6]	A	G	2.219e^-4	0.978	UTR_5_PRIME CG3036 UPSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10822897	3L_10822897_SNP [dm3] 3L_10829797_SNP [dm6]	T	A	2.224e^-4	0.978	INTERGENIC
3L	4709055	3L_4709055_SNP [dm3] 3L_4709055_SNP [dm6]	G	A	2.226e^-4	0.978	DOWNSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5797502	3L_5797502_SNP [dm3] 3L_5804402_SNP [dm6]	G	A	2.226e^-4	0.978	NON_SYNONYMOUS_CODING CG42272 INTRON S6k	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18420849	X_18420849_SNP [dm3] X_18526816_SNP [dm6]	A	C	2.229e^-4	0.978	DOWNSTREAM CG15042 INTRON Bx	TF binding site mE1_TFBS_inv
2R	5335187	2R_5335187_SNP [dm3] 2R_9447682_SNP [dm6]	T	C	2.230e^-4	0.978	INTRON Camta	TF binding site mE1_TFBS_HSA
2R	14925214	2R_14925214_SNP [dm3] 2R_19037709_SNP [dm6]	A	G	2.233e^-4	0.978	INTERGENIC
3L	5604337	3L_5604337_SNP [dm3] 3L_5611237_SNP [dm6]	A	G	2.238e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2L	15140640	2L_15140640_SNP [dm3] 2L_15140640_SNP [dm6]	A	T	2.258e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	12073843	2R_12073843_SNP [dm3] 2R_16186338_SNP [dm6]	G	T	2.259e^-4	0.978	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	16946980	X_16946980_DEL [dm3] X_17052947_DEL [dm6]	GG	G	2.260e^-4	0.978	INTRON CG45002
2R	19119543	2R_19119543_SNP [dm3] 2R_23232020_SNP [dm6]	A	C	2.275e^-4	0.978	UPSTREAM CG3092 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	10074004	2R_10074004_SNP [dm3] 2R_14186499_SNP [dm6]	G	C	2.280e^-4	0.978	SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8244534	3L_8244534_SNP [dm3] 3L_8251434_SNP [dm6]	A	C	2.282e^-4	0.978	INTRON Dscam4
3L	7266444	3L_7266444_SNP [dm3] 3L_7273344_SNP [dm6]	G	T	2.284e^-4	0.978	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
2L	3197191	2L_3197191_SNP [dm3] 2L_3197191_SNP [dm6]	A	T	2.285e^-4	0.978	INTRON CG34393
3R	17697430	3R_17697430_INS [dm3] 3R_21871708_INS [dm6]	A	AA	2.285e^-4	0.978	UTR_5_PRIME CG31431 INTRON CG31431	TF binding site mE1_TFBS_cad
2R	12072897	2R_12072897_SNP [dm3] 2R_16185392_SNP [dm6]	C	T	2.288e^-4	0.978	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	18975075	2R_18975075_SNP [dm3] 2R_23087552_SNP [dm6]	C	G	2.289e^-4	0.978	NON_SYNONYMOUS_CODING CG13538
3R	22449876	3R_22449876_SNP [dm3] 3R_26624154_SNP [dm6]	G	T	2.296e^-4	0.978	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
X	1221892	X_1221892_SNP [dm3] X_1327859_SNP [dm6]	T	C	2.299e^-4	0.978	SYNONYMOUS_CODING fs_1_N
3L	2545488	3L_2545488_SNP [dm3] 3L_2545488_SNP [dm6]	A	G	2.307e^-4	0.978	INTRON Spn
3L	4242128	3L_4242128_SNP [dm3] 3L_4242128_SNP [dm6]	G	T	2.316e^-4	0.978	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10023555	2R_10023555_DEL [dm3] 2R_14136050_DEL [dm6]	TT	T	2.320e^-4	0.978	INTRON Prosap
2R	19690410	2R_19690410_SNP [dm3] 2R_23802887_SNP [dm6]	T	C	2.322e^-4	0.978	UTR_3_PRIME CG30177
3L	4242887	3L_4242887_SNP [dm3] 3L_4242887_SNP [dm6]	G	A	2.328e^-4	0.978	NON_SYNONYMOUS_CODING pav SPLICE_SITE_REGION pav DOWNSTREAM CG14997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	1357083	2R_1357083_SNP [dm3] 2R_5469578_SNP [dm6]	G	C	2.330e^-4	0.978	INTRON CG30440	transposable element FlyBase
2R	18905184	2R_18905184_SNP [dm3] 2R_23017661_SNP [dm6]	G	A	2.338e^-4	0.978	INTRON twi & 1 other
2L	18814290	2L_18814290_SNP [dm3] 2L_18814290_SNP [dm6]	C	T	2.346e^-4	0.978	DOWNSTREAM CG17325 & 1 other INTERGENIC
2R	18556728	2R_18556728_SNP [dm3] 2R_22669223_SNP [dm6]	A	G	2.346e^-4	0.978	START_GAINED CG13516 UTR_5_PRIME CG13516 UPSTREAM CG13516 DOWNSTREAM CG30269	TF binding site mE1_TFBS_chinmo
3L	4242326	3L_4242326_SNP [dm3] 3L_4242326_SNP [dm6]	A	C	2.352e^-4	0.978	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	10342100	3R_10342100_SNP [dm3] 3R_14516378_SNP [dm6]	A	G	2.362e^-4	0.978	SYNONYMOUS_CODING Pde6 UPSTREAM CG34273
3R	13192097	3R_13192097_SNP [dm3] 3R_17366375_SNP [dm6]	A	G	2.365e^-4	0.978	UPSTREAM beat-IIa INTERGENIC
2R	15571285	2R_15571285_SNP [dm3] 2R_19683780_SNP [dm6]	A	G	2.367e^-4	0.978	UPSTREAM CG34198 EXON CR44505
2L	1675518	2L_1675518_SNP [dm3] 2L_1675518_SNP [dm6]	A	G	2.369e^-4	0.978	INTRON chinmo
3R	26490513	3R_26490513_SNP [dm3] 3R_30664791_SNP [dm6]	C	A	2.392e^-4	0.978	EXON CR45191
3L	11173203	3L_11173203_SNP [dm3] 3L_11180103_SNP [dm6]	A	T	2.394e^-4	0.978	INTRON GlcAT-P
2R	3724660	2R_3724660_SNP [dm3] 2R_7837155_SNP [dm6]	T	A	2.404e^-4	0.978	SYNONYMOUS_CODING Dgk	TF binding site mE1_TFBS_chinmo
3R	10445442	3R_10445442_SNP [dm3] 3R_14619720_SNP [dm6]	T	C	2.407e^-4	0.978	UTR_3_PRIME put DOWNSTREAM CG14853 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	12241397	2L_12241397_SNP [dm3] 2L_12241397_SNP [dm6]	T	C	2.408e^-4	0.978	SYNONYMOUS_CODING aret INTRON aret	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2280753	3L_2280753_SNP [dm3] 3L_2280753_SNP [dm6]	C	T	2.409e^-4	0.978	INTERGENIC
2R	18966146	2R_18966146_SNP [dm3] 2R_23078623_SNP [dm6]	A	T	2.435e^-4	0.978	SYNONYMOUS_CODING Art7 DOWNSTREAM CG43659	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4994484	2L_4994484_SNP [dm3] 2L_4994484_SNP [dm6]	G	C	2.440e^-4	0.978	INTRON Rtnl1
3L	7447890	3L_7447890_SNP [dm3] 3L_7454790_SNP [dm6]	G	C	2.441e^-4	0.978	DOWNSTREAM CG42458 INTERGENIC
2L	8140012	2L_8140012_SNP [dm3] 2L_8140012_SNP [dm6]	T	A	2.442e^-4	0.978	SYNONYMOUS_CODING CG8552 START_GAINED CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
X	8100504	X_8100504_SNP [dm3] X_8206471_SNP [dm6]	A	T	2.444e^-4	0.978	INTRON sdt
3L	1142361	3L_1142361_SNP [dm3] 3L_1142361_SNP [dm6]	G	A	2.449e^-4	0.978	SYNONYMOUS_CODING bab2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	13899615	3R_13899615_SNP [dm3] 3R_18073893_SNP [dm6]	A	T	2.450e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_cad
X	5076530	X_5076530_SNP [dm3] X_5182497_SNP [dm6]	C	T	2.451e^-4	0.978	UPSTREAM CG5062 INTRON rg & 1 other
2R	6130610	2R_6130610_SNP [dm3] 2R_10243105_SNP [dm6]	T	A	2.455e^-4	0.978	INTRON Hdc	TF binding site mE1_TFBS_cad
2L	3668129	2L_3668129_SNP [dm3] 2L_3668129_SNP [dm6]	T	C	2.457e^-4	0.978	NON_SYNONYMOUS_CODING Sfp24Ba DOWNSTREAM CG42463 INTRON CG34340
3L	10837540	3L_10837540_DEL [dm3] 3L_10844440_DEL [dm6]	TCAAGTGTTTG...	T	2.459e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13441664	3R_13441664_SNP [dm3] 3R_17615942_SNP [dm6]	G	A	2.467e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_bab1
X	21457297	X_21457297_SNP [dm3] X_21586270_SNP [dm6]	T	C	2.468e^-4	0.978	INTERGENIC
2R	9679404	2R_9679404_SNP [dm3] 2R_13791899_SNP [dm6]	G	A	2.469e^-4	0.978	UPSTREAM CR43811 INTERGENIC
2L	8804957	2L_8804957_SNP [dm3] 2L_8804957_SNP [dm6]	T	G	2.471e^-4	0.978	INTERGENIC
2R	9184725	2R_9184725_SNP [dm3] 2R_13297220_SNP [dm6]	A	C	2.481e^-4	0.978	UTR_3_PRIME CG4734
2R	14700233	2R_14700233_DEL [dm3] 2R_18812728_DEL [dm6]	GAATG	G	2.481e^-4	0.978	INTRON CG15096
2R	14791656	2R_14791656_SNP [dm3] 2R_18904151_SNP [dm6]	G	T	2.500e^-4	0.978	INTRON sano	TF binding site BDTNP1_TFBS_dl
2R	13384857	2R_13384857_SNP [dm3] 2R_17497352_SNP [dm6]	G	A	2.500e^-4	0.978	INTERGENIC
2R	12300567	2R_12300567_SNP [dm3] 2R_16413062_SNP [dm6]	A	G	2.501e^-4	0.978	INTRON Sema-2b
2R	11187570	2R_11187570_SNP [dm3] 2R_15300065_SNP [dm6]	T	G	2.506e^-4	0.978	INTRON Trpm
2R	18556693	2R_18556693_SNP [dm3] 2R_22669188_SNP [dm6]	C	T	2.507e^-4	0.978	START_GAINED CG13516 UTR_5_PRIME CG13516 UPSTREAM CG13516 DOWNSTREAM CG30269	TF binding site mE1_TFBS_chinmo
2L	6487544	2L_6487544_SNP [dm3] 2L_6487544_SNP [dm6]	T	G	2.509e^-4	0.978	UTR_3_PRIME DLP & 1 other DOWNSTREAM KFase & 1 other	TF binding site mE1_TFBS_cad
3R	8151838	3R_8151838_SNP [dm3] 3R_12326116_SNP [dm6]	C	T	2.509e^-4	0.978	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	3741129	3L_3741129_SNP [dm3] 3L_3741129_SNP [dm6]	C	T	2.513e^-4	0.978	INTRON CG32264
2R	15965570	2R_15965570_INS [dm3] 2R_20078065_INS [dm6]	A	AGATATATGTA...	2.515e^-4	0.978	INTERGENIC
X	2169180	X_2169180_SNP [dm3] X_2275147_SNP [dm6]	C	G	2.520e^-4	0.978	UPSTREAM CG2918 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
X	10751439	X_10751439_SNP [dm3] X_10857406_SNP [dm6]	C	G	2.522e^-4	0.978	UTR_5_PRIME sofe UPSTREAM CG2186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15570066	2R_15570066_SNP [dm3] 2R_19682561_SNP [dm6]	C	G	2.523e^-4	0.978	UTR_3_PRIME CG34198 DOWNSTREAM CR44505	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10014170	2R_10014170_SNP [dm3] 2R_14126665_SNP [dm6]	A	C	2.529e^-4	0.978	INTRON Prosap
X	9267990	X_9267990_SNP [dm3] X_9373957_SNP [dm6]	T	C	2.531e^-4	0.978	INTRON mgl
2R	20195624	2R_20195624_SNP [dm3] 2R_24308101_SNP [dm6]	C	T	2.536e^-4	0.978	INTRON betaTub60D	regulatory region REDfly_CRMs
2L	9207798	2L_9207798_SNP [dm3] 2L_9207798_SNP [dm6]	C	A	2.536e^-4	0.978	INTRON tai
3L	11173199	3L_11173199_SNP [dm3] 3L_11180099_SNP [dm6]	T	G	2.548e^-4	0.978	INTRON GlcAT-P
3L	9667890	3L_9667890_SNP [dm3] 3L_9674790_SNP [dm6]	T	A	2.550e^-4	0.978	INTRON fry
X	8092911	X_8092911_SNP [dm3] X_8198878_SNP [dm6]	G	T	2.555e^-4	0.978	INTRON sdt
2R	13485791	2R_13485791_SNP [dm3] 2R_17598286_SNP [dm6]	T	A	2.558e^-4	0.978	DOWNSTREAM CG11423 & 1 other INTRON lack	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1592790	3R_1592790_SNP [dm3] 3R_5767068_SNP [dm6]	A	C	2.567e^-4	0.978	INTRON CG2082	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26652506	3R_26652506_SNP [dm3] 3R_30826784_SNP [dm6]	G	A	2.567e^-4	0.978	UTR_3_PRIME cindr DOWNSTREAM cindr
2L	5018083	2L_5018083_SNP [dm3] 2L_5018083_SNP [dm6]	A	G	2.573e^-4	0.978	SYNONYMOUS_CODING vkg	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9018106	2R_9018106_SNP [dm3] 2R_13130601_SNP [dm6]	G	A	2.573e^-4	0.978	INTRON CG13326	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6642252	X_6642252_SNP [dm3] X_6748219_SNP [dm6]	C	A	2.587e^-4	0.978	UPSTREAM CR44964 INTRON CG14439
3L	16342860	3L_16342860_SNP [dm3] 3L_16349760_SNP [dm6]	G	T	2.590e^-4	0.978	SYNONYMOUS_CODING CG4925 UPSTREAM tRNA:CR32357 DOWNSTREAM mRpS34
3R	13645326	3R_13645326_SNP [dm3] 3R_17819604_SNP [dm6]	C	A	2.591e^-4	0.978	INTRON tinc
2R	9680284	2R_9680284_SNP [dm3] 2R_13792779_SNP [dm6]	G	A	2.592e^-4	0.978	DOWNSTREAM CR43811 INTERGENIC
3R	10366617	3R_10366617_SNP [dm3] 3R_14540895_SNP [dm6]	G	A	2.599e^-4	0.978	INTRON Pde6
X	11264915	X_11264915_SNP [dm3] X_11370882_SNP [dm6]	A	T	2.603e^-4	0.978	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	535026	2L_535026_SNP [dm3] 2L_535026_SNP [dm6]	G	A	2.603e^-4	0.978	INTRON ush
2R	17649028	2R_17649028_SNP [dm3] 2R_21761523_SNP [dm6]	A	C	2.605e^-4	0.978	INTERGENIC
2L	5863105	2L_5863105_SNP [dm3] 2L_5863105_SNP [dm6]	A	G	2.605e^-4	0.978	INTRON rau
2L	20417148	2L_20417148_SNP [dm3] 2L_20417148_SNP [dm6]	C	T	2.607e^-4	0.978	UTR_5_PRIME Arpc2 UPSTREAM CG10949	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	18515707	3R_18515707_SNP [dm3] 3R_22689985_SNP [dm6]	G	C	2.615e^-4	0.978	NON_SYNONYMOUS_CODING wfs1 UPSTREAM Nup133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14795609	2R_14795609_SNP [dm3] 2R_18908104_SNP [dm6]	C	A	2.627e^-4	0.978	DOWNSTREAM Vha100-3 INTRON sano
2R	8898177	2R_8898177_SNP [dm3] 2R_13010672_SNP [dm6]	A	T	2.630e^-4	0.978	INTERGENIC
3R	13880663	3R_13880663_SNP [dm3] 3R_18054941_SNP [dm6]	A	C	2.632e^-4	0.978	INTERGENIC
3L	12564316	3L_12564316_SNP [dm3] 3L_12571216_SNP [dm6]	G	A	2.636e^-4	0.978	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22279165	3R_22279165_SNP [dm3] 3R_26453443_SNP [dm6]	G	T	2.638e^-4	0.978	INTRON CG5447
2R	5401020	2R_5401020_SNP [dm3] 2R_9513515_SNP [dm6]	A	G	2.639e^-4	0.978	INTRON brp
2L	1111988	2L_1111988_SNP [dm3] 2L_1111988_SNP [dm6]	T	C	2.655e^-4	0.978	UPSTREAM CG14340 INTRON CG14339	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9796388	2R_9796388_SNP [dm3] 2R_13908883_SNP [dm6]	C	G	2.656e^-4	0.978	INTRON shot
2R	9796405	2R_9796405_SNP [dm3] 2R_13908900_SNP [dm6]	C	T	2.656e^-4	0.978	INTRON shot
2R	12145515	2R_12145515_SNP [dm3] 2R_16258010_SNP [dm6]	G	C	2.674e^-4	0.978	INTRON CngA
2L	5718199	2L_5718199_SNP [dm3] 2L_5718199_SNP [dm6]	T	C	2.674e^-4	0.978	UTR_3_PRIME CG11149 DOWNSTREAM CG34011
2L	9205242	2L_9205242_SNP [dm3] 2L_9205242_SNP [dm6]	A	G	2.675e^-4	0.978	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4242325	3L_4242325_SNP [dm3] 3L_4242325_SNP [dm6]	G	A	2.680e^-4	0.978	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	13225309	3L_13225309_SNP [dm3] 3L_13232209_SNP [dm6]	C	A	2.681e^-4	0.978	INTRON caps
2R	18556557	2R_18556557_DEL [dm3] 2R_22669052_DEL [dm6]	TTATTCAGT	T	2.694e^-4	0.978	UPSTREAM CG13516 DOWNSTREAM CG30269 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4994605	2L_4994605_SNP [dm3] 2L_4994605_SNP [dm6]	A	C	2.703e^-4	0.978	SYNONYMOUS_CODING Rtnl1
X	17055592	X_17055592_SNP [dm3] X_17161559_SNP [dm6]	C	T	2.707e^-4	0.978	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4159247	2L_4159247_SNP [dm3] 2L_4159247_SNP [dm6]	G	C	2.714e^-4	0.978	INTERGENIC
X	16946999	X_16946999_SNP [dm3] X_17052966_SNP [dm6]	A	T	2.715e^-4	0.978	INTRON CG45002
2L	5924839	2L_5924839_SNP [dm3] 2L_5924839_SNP [dm6]	T	C	2.716e^-4	0.978	DOWNSTREAM CR43926 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	17300403	2L_17300403_SNP [dm3] 2L_17300403_SNP [dm6]	A	T	2.717e^-4	0.978	INTERGENIC
3L	12643925	3L_12643925_SNP [dm3] 3L_12650825_SNP [dm6]	A	G	2.722e^-4	0.978	INTRON CR43431	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	10342704	3R_10342704_SNP [dm3] 3R_14516982_SNP [dm6]	A	T	2.727e^-4	0.978	UPSTREAM CG34273 INTRON Pde6
3L	2117260	3L_2117260_SNP [dm3] 3L_2117260_SNP [dm6]	G	T	2.728e^-4	0.978	DOWNSTREAM zormin INTERGENIC
2R	6536276	2R_6536276_SNP [dm3] 2R_10648771_SNP [dm6]	G	C	2.728e^-4	0.978	UPSTREAM CG12934 DOWNSTREAM Elp2 INTERGENIC
3L	19323081	3L_19323081_SNP [dm3] 3L_19329981_SNP [dm6]	T	A	2.741e^-4	0.978	INTRON pip	TF binding site mE1_TFBS_HSA
2R	15535232	2R_15535232_SNP [dm3] 2R_19647727_SNP [dm6]	G	C	2.743e^-4	0.978	UPSTREAM CG15905 INTERGENIC	TF binding site mE1_TFBS_cad
2L	8131734	2L_8131734_SNP [dm3] 2L_8131734_SNP [dm6]	A	G	2.747e^-4	0.978	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	17157277	X_17157277_SNP [dm3] X_17263244_SNP [dm6]	T	C	2.751e^-4	0.978	INTRON f
2L	8137156	2L_8137156_SNP [dm3] 2L_8137156_SNP [dm6]	T	G	2.752e^-4	0.978	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
3L	16318753	3L_16318753_SNP [dm3] 3L_16325653_SNP [dm6]	T	A	2.757e^-4	0.978	SYNONYMOUS_CODING CG13040 DOWNSTREAM CG13039
3R	25570650	3R_25570650_SNP [dm3] 3R_29744928_SNP [dm6]	C	T	2.759e^-4	0.978	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16946914	X_16946914_DEL [dm3] X_17052881_DEL [dm6]	TTTTTTATCACATCTAT...	T	2.775e^-4	0.978	INTRON CG45002
2R	12073844	2R_12073844_SNP [dm3] 2R_16186339_SNP [dm6]	A	T	2.778e^-4	0.978	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	14151921	X_14151921_SNP [dm3] X_14257888_SNP [dm6]	T	C	2.791e^-4	0.978	SYNONYMOUS_CODING mud UTR_3_PRIME mud INTRON mud	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4994500	2L_4994500_SNP [dm3] 2L_4994500_SNP [dm6]	C	T	2.803e^-4	0.978	SPLICE_SITE_REGION Rtnl1 INTRON Rtnl1
2R	11797580	2R_11797580_SNP [dm3] 2R_15910075_SNP [dm6]	T	G	2.818e^-4	0.978	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12145781	2R_12145781_SNP [dm3] 2R_16258276_SNP [dm6]	T	C	2.820e^-4	0.978	INTRON CngA
2R	11299547	2R_11299547_SNP [dm3] 2R_15412042_SNP [dm6]	G	A	2.822e^-4	0.978	INTRON CG43729
3R	22313229	3R_22313229_SNP [dm3] 3R_26487507_SNP [dm6]	T	C	2.828e^-4	0.978	INTRON plum	TF binding site mE1_TFBS_inv
X	6535042	X_6535042_SNP [dm3] X_6641009_SNP [dm6]	G	A	2.850e^-4	0.978	INTRON pigs
2L	18803180	2L_18803180_SNP [dm3] 2L_18803180_SNP [dm6]	T	A	2.864e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5046118	2L_5046118_SNP [dm3] 2L_5046118_SNP [dm6]	C	T	2.875e^-4	0.978	INTRON CG33995 & 2 others	TF binding site mE1_TFBS_cad
2L	5046120	2L_5046120_SNP [dm3] 2L_5046120_SNP [dm6]	C	T	2.875e^-4	0.978	INTRON CG33995 & 2 others	TF binding site mE1_TFBS_cad
3R	4991494	3R_4991494_INS [dm3] 3R_9165772_INS [dm6]	A	ACAAACGTTACAA...	2.875e^-4	0.978	INTRON pum
2R	16836656	2R_16836656_SNP [dm3] 2R_20949151_SNP [dm6]	A	T	2.883e^-4	0.978	UPSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12229044	2L_12229044_SNP [dm3] 2L_12229044_SNP [dm6]	A	G	2.884e^-4	0.978	INTRON aret
3L	8662126	3L_8662126_INS [dm3] 3L_8669026_INS [dm6]	C	CT	2.887e^-4	0.978	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	17956177	3R_17956177_SNP [dm3] 3R_22130455_SNP [dm6]	T	C	2.895e^-4	0.978	SPLICE_SITE_REGION CG42390 INTRON CG42390
X	10751602	X_10751602_SNP [dm3] X_10857569_SNP [dm6]	G	A	2.900e^-4	0.978	UPSTREAM CG2186 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	17174590	3L_17174590_SNP [dm3] 3L_17181490_SNP [dm6]	C	T	2.906e^-4	0.978	INTRON Rbp6
2R	10603253	2R_10603253_SNP [dm3] 2R_14715748_SNP [dm6]	A	T	2.909e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13389714	3R_13389714_SNP [dm3] 3R_17563992_SNP [dm6]	A	C	2.917e^-4	0.978	INTRON Hmx
3R	7760307	3R_7760307_SNP [dm3] 3R_11934585_SNP [dm6]	G	A	2.925e^-4	0.978	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	4563197	3R_4563197_SNP [dm3] 3R_8737475_SNP [dm6]	G	A	2.932e^-4	0.978	SYNONYMOUS_CODING CG9801	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19390248	2R_19390248_SNP [dm3] 2R_23502725_SNP [dm6]	G	T	2.934e^-4	0.978	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
2L	4676347	2L_4676347_SNP [dm3] 2L_4676347_SNP [dm6]	G	C	2.934e^-4	0.978	INTERGENIC
2R	18553625	2R_18553625_SNP [dm3] 2R_22666120_SNP [dm6]	G	A	2.957e^-4	0.978	UTR_3_PRIME CG42867 UPSTREAM CR42868 DOWNSTREAM CR45269
3L	15420051	3L_15420051_SNP [dm3] 3L_15426951_SNP [dm6]	A	G	2.966e^-4	0.978	INTERGENIC
2R	14884754	2R_14884754_SNP [dm3] 2R_18997249_SNP [dm6]	C	A	2.968e^-4	0.978	NON_SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8531884	2R_8531884_SNP [dm3] 2R_12644379_SNP [dm6]	A	G	2.983e^-4	0.978	INTRON CG8785	TF binding site mE1_TFBS_cad
3L	17148792	3L_17148792_SNP [dm3] 3L_17155692_SNP [dm6]	T	G	2.995e^-4	0.978	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9792734	2R_9792734_SNP [dm3] 2R_13905229_SNP [dm6]	A	G	3.009e^-4	0.978	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3L	476587	3L_476587_SNP [dm3] 3L_476587_SNP [dm6]	G	A	3.011e^-4	0.978	INTRON klar
2L	15138801	2L_15138801_SNP [dm3] 2L_15138801_SNP [dm6]	G	A	3.016e^-4	0.978	INTERGENIC
2L	9222812	2L_9222812_DEL [dm3] 2L_9222812_DEL [dm6]	TGCAACAAC	A	3.021e^-4	0.978	INTRON tai
3L	16342914	3L_16342914_SNP [dm3] 3L_16349814_SNP [dm6]	C	T	3.021e^-4	0.978	UPSTREAM tRNA:CR32357 INTRON CG4925
3L	7748848	3L_7748848_SNP [dm3] 3L_7755748_SNP [dm6]	G	A	3.027e^-4	0.978	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
3L	15999209	3L_15999209_SNP [dm3] 3L_16006109_SNP [dm6]	G	A	3.028e^-4	0.978	SYNONYMOUS_CODING mRpS31 DOWNSTREAM mib1
2R	18504298	2R_18504298_SNP [dm3] 2R_22616793_SNP [dm6]	G	T	3.032e^-4	0.978	INTRON CG33143
X	14654576	X_14654576_SNP [dm3] X_14760543_SNP [dm6]	C	A	3.034e^-4	0.978	INTRON CG15890
2L	947672	2L_947672_SNP [dm3] 2L_947672_SNP [dm6]	C	T	3.045e^-4	0.978	INTRON CG4341
2L	7843454	2L_7843454_SNP [dm3] 2L_7843454_SNP [dm6]	A	G	3.053e^-4	0.978	INTERGENIC
X	19282276	X_19282276_SNP [dm3] X_19388243_SNP [dm6]	A	C	3.054e^-4	0.978	INTRON kek5
2L	6536376	2L_6536376_SNP [dm3] 2L_6536376_SNP [dm6]	A	T	3.056e^-4	0.978	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	6680769	3L_6680769_SNP [dm3] 3L_6687669_SNP [dm6]	T	A	3.058e^-4	0.978	INTERGENIC
2L	5439206	2L_5439206_SNP [dm3] 2L_5439206_SNP [dm6]	A	G	3.063e^-4	0.978	INTRON CR31647
2R	15411935	2R_15411935_DEL [dm3] 2R_19524430_DEL [dm6]	AA	A	3.072e^-4	0.978	UTR_3_PRIME sm
2R	14994295	2R_14994295_SNP [dm3] 2R_19106790_SNP [dm6]	G	A	3.076e^-4	0.978	INTRON 5-HT1A
X	10153749	X_10153749_DEL [dm3] X_10259716_DEL [dm6]	ACT	A	3.078e^-4	0.978	INTRON CR43959 & 1 other
3R	14063375	3R_14063375_SNP [dm3] 3R_18237653_SNP [dm6]	T	A	3.079e^-4	0.978	INTRON repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6941442	2L_6941442_SNP [dm3] 2L_6941442_SNP [dm6]	T	C	3.083e^-4	0.978	INTRON CG18304	TF binding site BDTNP1_TFBS_dl
2L	4891190	2L_4891190_SNP [dm3] 2L_4891190_SNP [dm6]	C	G	3.083e^-4	0.978	UTR_3_PRIME CG15625 UPSTREAM CG3036 DOWNSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17295014	2L_17295014_SNP [dm3] 2L_17295014_SNP [dm6]	G	C	3.086e^-4	0.978	INTERGENIC
2L	5718223	2L_5718223_SNP [dm3] 2L_5718223_SNP [dm6]	G	T	3.088e^-4	0.978	UTR_3_PRIME CG11149 DOWNSTREAM CG34011
3L	4243503	3L_4243503_SNP [dm3] 3L_4243503_SNP [dm6]	C	T	3.091e^-4	0.978	SYNONYMOUS_CODING pav DOWNSTREAM CG14997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	3676605	3L_3676605_SNP [dm3] 3L_3676605_SNP [dm6]	A	T	3.096e^-4	0.978	INTERGENIC
3L	7976018	3L_7976018_SNP [dm3] 3L_7982918_SNP [dm6]	A	T	3.111e^-4	0.978	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	17269583	X_17269583_SNP [dm3] X_17375550_SNP [dm6]	A	G	3.111e^-4	0.978	INTERGENIC
2R	8334285	2R_8334285_SNP [dm3] 2R_12446780_SNP [dm6]	C	A	3.112e^-4	0.978	INTRON Dyb
2R	9920615	2R_9920615_SNP [dm3] 2R_14033110_SNP [dm6]	C	T	3.112e^-4	0.978	INTRON mam
2R	10033065	2R_10033065_SNP [dm3] 2R_14145560_SNP [dm6]	C	T	3.116e^-4	0.978	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	5194257	3L_5194257_SNP [dm3] 3L_5201157_SNP [dm6]	C	A	3.117e^-4	0.978	START_GAINED shep UTR_5_PRIME shep INTRON shep
2R	20216450	2R_20216450_SNP [dm3] 2R_24328927_SNP [dm6]	T	A	3.118e^-4	0.978	UPSTREAM CR44810 INTRON CR44810
2R	5583743	2R_5583743_SNP [dm3] 2R_9696238_SNP [dm6]	T	A	3.121e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_sens
3L	501074	3L_501074_SNP [dm3] 3L_501074_SNP [dm6]	T	G	3.124e^-4	0.978	UPSTREAM CG34267 INTRON klar & 1 other
3L	12287447	3L_12287447_SNP [dm3] 3L_12294347_SNP [dm6]	A	G	3.125e^-4	0.978	INTRON CG4328
3R	9665219	3R_9665219_SNP [dm3] 3R_13839497_SNP [dm6]	G	A	3.137e^-4	0.978	SYNONYMOUS_CODING CG31495	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6344139	2L_6344139_SNP [dm3] 2L_6344139_SNP [dm6]	C	T	3.141e^-4	0.978	INTRON Cpr	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_h mE1_TFBS_HSA
3L	17149989	3L_17149989_SNP [dm3] 3L_17156889_SNP [dm6]	T	C	3.143e^-4	0.978	INTRON Rbp6
X	10751382	X_10751382_SNP [dm3] X_10857349_SNP [dm6]	C	T	3.150e^-4	0.978	UTR_5_PRIME sofe UPSTREAM CG2186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17649035	2R_17649035_SNP [dm3] 2R_21761530_SNP [dm6]	T	A	3.160e^-4	0.978	INTERGENIC
2R	8898310	2R_8898310_SNP [dm3] 2R_13010805_SNP [dm6]	A	T	3.162e^-4	0.978	INTERGENIC
2L	4994486	2L_4994486_SNP [dm3] 2L_4994486_SNP [dm6]	T	C	3.164e^-4	0.978	INTRON Rtnl1
3L	8770387	3L_8770387_SNP [dm3] 3L_8777287_SNP [dm6]	A	C	3.169e^-4	0.978	SYNONYMOUS_CODING Fhos INTRON Fhos
2R	13469493	2R_13469493_SNP [dm3] 2R_17581988_SNP [dm6]	A	T	3.173e^-4	0.978	UPSTREAM Dcr-2 DOWNSTREAM CG6484 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	12029576	X_12029576_SNP [dm3] X_12135543_SNP [dm6]	T	A	3.178e^-4	0.978	INTRON Ten-a
X	2590894	X_2590894_SNP [dm3] X_2696861_SNP [dm6]	A	G	3.186e^-4	0.978	SPLICE_SITE_REGION CG2658 INTRON CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12091172	2R_12091172_SNP [dm3] 2R_16203667_SNP [dm6]	C	T	3.189e^-4	0.978	UTR_3_PRIME mrj UPSTREAM shark
2R	18436653	2R_18436653_SNP [dm3] 2R_22549148_SNP [dm6]	G	A	3.199e^-4	0.978	UPSTREAM CG6018 INTRON px
3R	9665051	3R_9665051_SNP [dm3] 3R_13839329_SNP [dm6]	G	T	3.202e^-4	0.978	SYNONYMOUS_CODING CG31495	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10364011	3R_10364011_SNP [dm3] 3R_14538289_SNP [dm6]	G	C	3.207e^-4	0.978	INTRON Pde6
2L	16341205	2L_16341205_SNP [dm3] 2L_16341205_SNP [dm6]	A	T	3.209e^-4	0.978	NON_SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1742031	3R_1742031_SNP [dm3] 3R_5916309_SNP [dm6]	A	G	3.210e^-4	0.978	INTRON CG34113
2R	10052496	2R_10052496_SNP [dm3] 2R_14164991_SNP [dm6]	T	A	3.213e^-4	0.978	UPSTREAM CG8323 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
3R	10508743	3R_10508743_SNP [dm3] 3R_14683021_SNP [dm6]	A	T	3.215e^-4	0.978	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2613697	2L_2613697_SNP [dm3] 2L_2613697_SNP [dm6]	T	A	3.229e^-4	0.978	INTERGENIC
2L	2711750	2L_2711750_SNP [dm3] 2L_2711750_SNP [dm6]	A	C	3.233e^-4	0.978	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18803181	2L_18803181_SNP [dm3] 2L_18803181_SNP [dm6]	T	C	3.242e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6112808	2L_6112808_SNP [dm3] 2L_6112808_SNP [dm6]	A	C	3.250e^-4	0.978	INTRON stai
3R	25570751	3R_25570751_SNP [dm3] 3R_29745029_SNP [dm6]	A	C	3.257e^-4	0.978	START_GAINED CG7609 UTR_5_PRIME CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8092878	X_8092878_SNP [dm3] X_8198845_SNP [dm6]	A	C	3.262e^-4	0.978	INTRON sdt
2R	14925207	2R_14925207_SNP [dm3] 2R_19037702_SNP [dm6]	A	C	3.264e^-4	0.978	INTERGENIC
2R	10603096	2R_10603096_SNP [dm3] 2R_14715591_SNP [dm6]	A	T	3.265e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18964625	X_18964625_SNP [dm3] X_19070592_SNP [dm6]	A	T	3.268e^-4	0.978	INTERGENIC
2L	11331843	2L_11331843_SNP [dm3] 2L_11331843_SNP [dm6]	T	C	3.281e^-4	0.978	DOWNSTREAM CR44584 INTERGENIC
3L	16342851	3L_16342851_SNP [dm3] 3L_16349751_SNP [dm6]	G	A	3.284e^-4	0.978	SYNONYMOUS_CODING CG4925 UPSTREAM tRNA:CR32357 DOWNSTREAM mRpS34
X	16946993	X_16946993_SNP [dm3] X_17052960_SNP [dm6]	T	A	3.286e^-4	0.978	INTRON CG45002
2R	18907642	2R_18907642_SNP [dm3] 2R_23020119_SNP [dm6]	G	A	3.299e^-4	0.978	INTRON twi & 1 other
2L	1265903	2L_1265903_SNP [dm3] 2L_1265903_SNP [dm6]	C	G	3.303e^-4	0.978	INTRON robo3
3R	13197670	3R_13197670_SNP [dm3] 3R_17371948_SNP [dm6]	G	T	3.313e^-4	0.978	UPSTREAM CR44256 INTERGENIC
2R	18778317	2R_18778317_SNP [dm3] 2R_22890794_SNP [dm6]	G	T	3.322e^-4	0.978	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
2R	12562559	2R_12562559_SNP [dm3] 2R_16675054_SNP [dm6]	G	A	3.331e^-4	0.978	INTRON CG30463
3L	9691869	3L_9691869_SNP [dm3] 3L_9698769_SNP [dm6]	T	A	3.342e^-4	0.978	INTRON UbcD4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8092875	X_8092875_SNP [dm3] X_8198842_SNP [dm6]	T	A	3.360e^-4	0.978	INTRON sdt
2R	15540053	2R_15540053_SNP [dm3] 2R_19652548_SNP [dm6]	T	G	3.368e^-4	0.978	UPSTREAM CR44213 INTRON Ir56e EXON CR44212
3L	8903049	3L_8903049_SNP [dm3] 3L_8909949_SNP [dm6]	A	T	3.370e^-4	0.978	NON_SYNONYMOUS_CODING mfr UTR_5_PRIME mfr
2L	9338193	2L_9338193_SNP [dm3] 2L_9338193_SNP [dm6]	C	T	3.375e^-4	0.978	SYNONYMOUS_CODING Eaat1
2R	8556482	2R_8556482_SNP [dm3] 2R_12668977_SNP [dm6]	G	A	3.390e^-4	0.978	INTRON nemy
2R	7596387	2R_7596387_SNP [dm3] 2R_11708882_SNP [dm6]	C	A	3.392e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	6474195	2L_6474195_INS [dm3] 2L_6474195_INS [dm6]	T	TGAGTT	3.398e^-4	0.978	UPSTREAM mmy DOWNSTREAM CG9536 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15334900	2L_15334900_SNP [dm3] 2L_15334900_SNP [dm6]	G	A	3.399e^-4	0.978	SYNONYMOUS_CODING esg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	9558345	3R_9558345_SNP [dm3] 3R_13732623_SNP [dm6]	G	C	3.404e^-4	0.978	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	3114337	2R_3114337_SNP [dm3] 2R_7226832_SNP [dm6]	T	C	3.408e^-4	0.978	INTERGENIC
2L	20405796	2L_20405796_SNP [dm3] 2L_20405796_SNP [dm6]	C	A	3.413e^-4	0.978	INTRON CG10947
2R	1192507	2R_1192507_SNP [dm3] 2R_5305002_SNP [dm6]	T	G	3.416e^-4	0.978	INTERGENIC	transposable element FlyBase
3R	8147882	3R_8147882_SNP [dm3] 3R_12322160_SNP [dm6]	C	T	3.421e^-4	0.978	DOWNSTREAM tRNA:CR31432 INTERGENIC
2R	3732350	2R_3732350_SNP [dm3] 2R_7844845_SNP [dm6]	A	T	3.432e^-4	0.978	INTRON Dgk
2L	4888479	2L_4888479_SNP [dm3] 2L_4888479_SNP [dm6]	C	A	3.440e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	21708537	3R_21708537_SNP [dm3] 3R_25882815_SNP [dm6]	A	T	3.440e^-4	0.978	INTRON SppL
3R	17956194	3R_17956194_SNP [dm3] 3R_22130472_SNP [dm6]	T	G	3.445e^-4	0.978	INTRON CG42390
2L	5666735	2L_5666735_SNP [dm3] 2L_5666735_SNP [dm6]	G	A	3.446e^-4	0.978	INTRON Hsp60C
2L	15031061	2L_15031061_SNP [dm3] 2L_15031061_SNP [dm6]	C	A	3.464e^-4	0.978	NON_SYNONYMOUS_CODING CG31832 INTRON GABA-B-R1
2R	16102012	2R_16102012_SNP [dm3] 2R_20214507_SNP [dm6]	G	A	3.465e^-4	0.978	INTERGENIC
2R	18571595	2R_18571595_SNP [dm3] 2R_22684090_SNP [dm6]	G	C	3.469e^-4	0.978	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26490529	3R_26490529_SNP [dm3] 3R_30664807_SNP [dm6]	C	A	3.475e^-4	0.978	EXON CR45191
3L	23465097	3L_23465097_SNP [dm3] 3L_23471997_SNP [dm6]	G	A	3.478e^-4	0.978	INTERGENIC	transposable element FlyBase
3L	4242130	3L_4242130_SNP [dm3] 3L_4242130_SNP [dm6]	T	A	3.480e^-4	0.978	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9747888	3L_9747888_SNP [dm3] 3L_9754788_SNP [dm6]	C	G	3.480e^-4	0.978	INTRON CG42268
3R	8148673	3R_8148673_SNP [dm3] 3R_12322951_SNP [dm6]	T	G	3.490e^-4	0.978	UPSTREAM CG10013 & 1 other INTERGENIC
2R	14951526	2R_14951526_SNP [dm3] 2R_19064021_SNP [dm6]	C	T	3.492e^-4	0.978	INTERGENIC
2L	12042656	2L_12042656_SNP [dm3] 2L_12042656_SNP [dm6]	C	T	3.492e^-4	0.978	SYNONYMOUS_CODING CG6785	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12042711	2L_12042711_SNP [dm3] 2L_12042711_SNP [dm6]	G	A	3.492e^-4	0.978	NON_SYNONYMOUS_CODING CG6785	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17353041	2L_17353041_SNP [dm3] 2L_17353041_SNP [dm6]	A	T	3.497e^-4	0.978	DOWNSTREAM CR43239 INTERGENIC
3L	16054972	3L_16054972_SNP [dm3] 3L_16061872_SNP [dm6]	A	T	3.502e^-4	0.978	INTRON Mbs
3R	13867111	3R_13867111_SNP [dm3] 3R_18041389_SNP [dm6]	A	G	3.518e^-4	0.978	INTERGENIC
2L	3438723	2L_3438723_SNP [dm3] 2L_3438723_SNP [dm6]	G	T	3.519e^-4	0.978	INTERGENIC
3R	3007072	3R_3007072_SNP [dm3] 3R_7181350_SNP [dm6]	T	C	3.538e^-4	0.978	INTRON sas	TF binding site mE1_TFBS_cad
2L	18809561	2L_18809561_SNP [dm3] 2L_18809561_SNP [dm6]	C	T	3.540e^-4	0.978	UTR_3_PRIME CG10570 & 1 other DOWNSTREAM CG10570 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5216233	3L_5216233_SNP [dm3] 3L_5223133_SNP [dm6]	C	G	3.572e^-4	0.978	INTRON shep
2R	20191529	2R_20191529_SNP [dm3] 2R_24304006_SNP [dm6]	C	T	3.574e^-4	0.978	INTERGENIC	regulatory region REDfly_CRMs
2R	12145078	2R_12145078_INS [dm3] 2R_16257573_INS [dm6]	A	AAACCCCCAAC...	3.577e^-4	0.978	INTRON CngA
2L	11231086	2L_11231086_SNP [dm3] 2L_11231086_SNP [dm6]	T	C	3.580e^-4	0.978	INTRON ab
X	11873324	X_11873324_SNP [dm3] X_11979291_SNP [dm6]	C	T	3.583e^-4	0.978	INTRON cac
3R	19206124	3R_19206124_SNP [dm3] 3R_23380402_SNP [dm6]	C	T	3.599e^-4	0.978	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
2R	9662372	2R_9662372_SNP [dm3] 2R_13774867_SNP [dm6]	T	C	3.601e^-4	0.978	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo
2R	11299565	2R_11299565_SNP [dm3] 2R_15412060_SNP [dm6]	T	A	3.602e^-4	0.978	INTRON CG43729
2L	18793740	2L_18793740_SNP [dm3] 2L_18793740_SNP [dm6]	G	A	3.604e^-4	0.978	UPSTREAM ham INTERGENIC	TF binding site mE1_TFBS_Trl
2R	8560593	2R_8560593_SNP [dm3] 2R_12673088_SNP [dm6]	G	C	3.605e^-4	0.978	INTRON CG42708	TF binding site mE1_TFBS_cad
2R	15540421	2R_15540421_SNP [dm3] 2R_19652916_SNP [dm6]	T	A	3.610e^-4	0.978	UPSTREAM CR44213 DOWNSTREAM Ir56e EXON CR44212
X	16579943	X_16579943_SNP [dm3] X_16685910_SNP [dm6]	G	A	3.612e^-4	0.978	SPLICE_SITE_REGION Sep4 SYNONYMOUS_CODING Sep4
3R	17982277	3R_17982277_SNP [dm3] 3R_22156555_SNP [dm6]	A	T	3.616e^-4	0.978	INTRON SKIP
3R	13441608	3R_13441608_SNP [dm3] 3R_17615886_SNP [dm6]	A	C	3.616e^-4	0.978	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	5124078	2R_5124078_SNP [dm3] 2R_9236573_SNP [dm6]	T	A	3.629e^-4	0.978	UPSTREAM Cyp4p2 INTRON hig
2R	14925273	2R_14925273_DEL [dm3] 2R_19037768_DEL [dm6]	CATTTAATTTTATTATTACT...	C	3.629e^-4	0.978	INTERGENIC
2L	15224998	2L_15224998_SNP [dm3] 2L_15224998_SNP [dm6]	T	G	3.633e^-4	0.978	INTERGENIC
2R	14513532	2R_14513532_SNP [dm3] 2R_18626027_SNP [dm6]	T	C	3.640e^-4	0.978	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site mE1_TFBS_sens
3L	8768407	3L_8768407_SNP [dm3] 3L_8775307_SNP [dm6]	G	A	3.641e^-4	0.978	INTRON Fhos
3R	17974090	3R_17974090_SNP [dm3] 3R_22148368_SNP [dm6]	C	T	3.650e^-4	0.978	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	760112	3L_760112_SNP [dm3] 3L_760112_SNP [dm6]	C	T	3.667e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	1357501	2R_1357501_SNP [dm3] 2R_5469996_SNP [dm6]	C	A	3.668e^-4	0.978	INTRON CG30440	transposable element FlyBase
2R	16953784	2R_16953784_SNP [dm3] 2R_21066279_SNP [dm6]	G	A	3.673e^-4	0.978	SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6451158	X_6451158_SNP [dm3] X_6557125_SNP [dm6]	G	A	3.676e^-4	0.978	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
X	13193642	X_13193642_SNP [dm3] X_13299609_SNP [dm6]	C	T	3.678e^-4	0.978	UTR_3_PRIME CG1622 INTRON CG1764
2R	14791561	2R_14791561_SNP [dm3] 2R_18904056_SNP [dm6]	G	T	3.679e^-4	0.978	INTRON sano
2R	17683187	2R_17683187_SNP [dm3] 2R_21795682_SNP [dm6]	G	T	3.683e^-4	0.978	UPSTREAM CG34204 INTERGENIC
3R	25202118	3R_25202118_SNP [dm3] 3R_29376396_SNP [dm6]	C	T	3.685e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10445450	3R_10445450_DEL [dm3] 3R_14619728_DEL [dm6]	TGA	T	3.686e^-4	0.978	UTR_3_PRIME put DOWNSTREAM CG14853 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	593805	3L_593805_SNP [dm3] 3L_593805_SNP [dm6]	C	T	3.687e^-4	0.978	SYNONYMOUS_CODING MED14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10868148	2L_10868148_SNP [dm3] 2L_10868148_SNP [dm6]	A	G	3.687e^-4	0.978	INTERGENIC
X	19547806	X_19547806_SNP [dm3] X_19653773_SNP [dm6]	T	C	3.703e^-4	0.978	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4339731	3L_4339731_SNP [dm3] 3L_4339731_SNP [dm6]	T	A	3.720e^-4	0.978	INTRON Cip4
3R	13164060	3R_13164060_SNP [dm3] 3R_17338338_SNP [dm6]	G	T	3.726e^-4	0.978	INTRON beat-IIa
X	12217501	X_12217501_DEL [dm3] X_12323468_DEL [dm6]	GG	G	3.728e^-4	0.978	INTRON Ten-a
3R	19918853	3R_19918853_SNP [dm3] 3R_24093131_SNP [dm6]	C	T	3.731e^-4	0.978	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3166469	2R_3166469_SNP [dm3] 2R_7278964_SNP [dm6]	C	A	3.732e^-4	0.978	NON_SYNONYMOUS_CODING Incenp UPSTREAM Br140	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10358454	3R_10358454_SNP [dm3] 3R_14532732_SNP [dm6]	G	A	3.743e^-4	0.978	INTRON Pde6
2R	19690403	2R_19690403_SNP [dm3] 2R_23802880_SNP [dm6]	A	C	3.762e^-4	0.978	UTR_3_PRIME CG30177
3L	1969287	3L_1969287_SNP [dm3] 3L_1969287_SNP [dm6]	A	G	3.766e^-4	0.978	DOWNSTREAM CG11815 INTRON CG1927
3L	1361798	3L_1361798_SNP [dm3] 3L_1361798_SNP [dm6]	A	G	3.766e^-4	0.978	INTRON Ptp61F
2L	3438752	2L_3438752_SNP [dm3] 2L_3438752_SNP [dm6]	A	G	3.769e^-4	0.978	INTERGENIC
2R	18553632	2R_18553632_INS [dm3] 2R_22666127_INS [dm6]	A	AG	3.770e^-4	0.978	UTR_3_PRIME CG42867 UPSTREAM CR42868 EXON CR45269
3R	11918675	3R_11918675_SNP [dm3] 3R_16092953_SNP [dm6]	A	C	3.771e^-4	0.978	SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1595901	3L_1595901_SNP [dm3] 3L_1595901_SNP [dm6]	G	A	3.787e^-4	0.978	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25481484	3R_25481484_SNP [dm3] 3R_29655762_SNP [dm6]	T	G	3.793e^-4	0.978	INTRON Dop1R2
2L	10550745	2L_10550745_SNP [dm3] 2L_10550745_SNP [dm6]	G	T	3.793e^-4	0.978	INTRON Trim9
2R	15539891	2R_15539891_SNP [dm3] 2R_19652386_SNP [dm6]	A	G	3.794e^-4	0.978	UPSTREAM CR44213 DOWNSTREAM CR44212 EXON Ir56e
2L	5666981	2L_5666981_SNP [dm3] 2L_5666981_SNP [dm6]	C	T	3.795e^-4	0.978	INTRON Hsp60C
3R	2627831	3R_2627831_SNP [dm3] 3R_6802109_SNP [dm6]	G	A	3.797e^-4	0.978	UTR_3_PRIME Dfd	TF binding site BDTNP1_TFBS_dl
3R	23581439	3R_23581439_DEL [dm3] 3R_27755717_DEL [dm6]	GATGGTGG	G	3.798e^-4	0.978	INTERGENIC
2R	13860353	2R_13860353_SNP [dm3] 2R_17972848_SNP [dm6]	C	A	3.802e^-4	0.978	INTERGENIC
3R	10056203	3R_10056203_INS [dm3] 3R_14230481_INS [dm6]	A	AA	3.804e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10269698	3R_10269698_SNP [dm3] 3R_14443976_SNP [dm6]	T	A	3.807e^-4	0.978	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22777776	3R_22777776_SNP [dm3] 3R_26952054_SNP [dm6]	C	T	3.807e^-4	0.978	INTRON CG6330
X	5323421	X_5323421_SNP [dm3] X_5429388_SNP [dm6]	C	T	3.810e^-4	0.978	UPSTREAM CG15784 DOWNSTREAM CR45517 INTERGENIC
3L	16319039	3L_16319039_SNP [dm3] 3L_16325939_SNP [dm6]	C	A	3.823e^-4	0.978	UTR_5_PRIME CG13040 UPSTREAM CG13040 DOWNSTREAM CG13039
2R	16409444	2R_16409444_SNP [dm3] 2R_20521939_SNP [dm6]	T	G	3.835e^-4	0.978	INTERGENIC
2R	9674954	2R_9674954_SNP [dm3] 2R_13787449_SNP [dm6]	A	T	3.836e^-4	0.978	UTR_3_PRIME Cpr50Ca
3L	6379888	3L_6379888_DEL [dm3] 3L_6386788_DEL [dm6]	ATTAGCAGCTC...	A	3.840e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1850588	2L_1850588_INS [dm3] 2L_1850588_INS [dm6]	A	ACTGCTTAGTTAACTCTATA...	3.841e^-4	0.978	INTRON wry
3R	4859909	3R_4859909_SNP [dm3] 3R_9034187_SNP [dm6]	T	C	3.844e^-4	0.978	UPSTREAM neur INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	16990857	X_16990857_SNP [dm3] X_17096824_SNP [dm6]	T	C	3.851e^-4	0.978	SYNONYMOUS_CODING CG16700 INTRON CG4991	TF binding site mE1_TFBS_sens
2R	18378949	2R_18378949_SNP [dm3] 2R_22491444_SNP [dm6]	C	T	3.857e^-4	0.978	UPSTREAM CG4610 INTRON CG4554	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26868698	3R_26868698_DEL [dm3] 3R_31042976_DEL [dm6]	TT	T	3.880e^-4	0.978	INTRON CanA1
3L	13225390	3L_13225390_SNP [dm3] 3L_13232290_SNP [dm6]	C	A	3.889e^-4	0.978	INTRON caps
2R	15940793	2R_15940793_SNP [dm3] 2R_20053288_SNP [dm6]	G	T	3.893e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	25202104	3R_25202104_SNP [dm3] 3R_29376382_SNP [dm6]	A	G	3.904e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25202119	3R_25202119_SNP [dm3] 3R_29376397_SNP [dm6]	C	T	3.904e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9781807	3R_9781807_SNP [dm3] 3R_13956085_SNP [dm6]	A	C	3.908e^-4	0.978	INTERGENIC
2L	9092914	2L_9092914_DEL [dm3] 2L_9092914_DEL [dm6]	TGCT	T	3.909e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	19319746	3L_19319746_SNP [dm3] 3L_19326646_SNP [dm6]	G	T	3.909e^-4	0.978	INTRON pip
X	16947287	X_16947287_SNP [dm3] X_17053254_SNP [dm6]	C	T	3.918e^-4	0.978	INTRON CG45002
2L	9222778	2L_9222778_SNP [dm3] 2L_9222778_SNP [dm6]	C	G	3.927e^-4	0.978	INTRON tai
3R	18054366	3R_18054366_SNP [dm3] 3R_22228644_SNP [dm6]	A	T	3.927e^-4	0.978	INTRON SKIP
X	14041350	X_14041350_SNP [dm3] X_14147317_SNP [dm6]	A	C	3.936e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17064701	3R_17064701_SNP [dm3] 3R_21238979_SNP [dm6]	T	C	3.937e^-4	0.978	INTERGENIC	regulatory region REDfly_CRMs
3L	10825049	3L_10825049_SNP [dm3] 3L_10831949_SNP [dm6]	T	A	3.941e^-4	0.978	INTERGENIC
2R	14676216	2R_14676216_SNP [dm3] 2R_18788711_SNP [dm6]	G	T	3.944e^-4	0.978	INTRON CG15080
2L	7720664	2L_7720664_SNP [dm3] 2L_7720664_SNP [dm6]	G	A	3.944e^-4	0.978	NON_SYNONYMOUS_CODING CG13794
3R	17956176	3R_17956176_SNP [dm3] 3R_22130454_SNP [dm6]	A	T	3.945e^-4	0.978	SPLICE_SITE_REGION CG42390 INTRON CG42390
2L	14024619	2L_14024619_SNP [dm3] 2L_14024619_SNP [dm6]	A	G	3.950e^-4	0.978	UPSTREAM CR31840 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10056195	3R_10056195_SNP [dm3] 3R_14230473_SNP [dm6]	T	G	3.951e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8131746	2L_8131746_SNP [dm3] 2L_8131746_SNP [dm6]	G	A	3.963e^-4	0.978	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9134571	2R_9134571_SNP [dm3] 2R_13247066_SNP [dm6]	C	T	3.978e^-4	0.978	SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17956192	3R_17956192_SNP [dm3] 3R_22130470_SNP [dm6]	C	A	3.990e^-4	0.978	INTRON CG42390
2R	12297972	2R_12297972_INS [dm3] 2R_16410467_INS [dm6]	A	ACTC	4.008e^-4	0.978	INTRON Sema-2b
3L	6388950	3L_6388950_SNP [dm3] 3L_6395850_SNP [dm6]	G	A	4.014e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7920270	X_7920270_SNP [dm3] X_8026237_SNP [dm6]	T	G	4.016e^-4	0.978	UTR_3_PRIME Tbh
X	8541067	X_8541067_SNP [dm3] X_8647034_SNP [dm6]	C	T	4.016e^-4	0.978	INTRON oc
X	16947000	X_16947000_SNP [dm3] X_17052967_SNP [dm6]	T	C	4.021e^-4	0.978	INTRON CG45002
3R	7877976	3R_7877976_SNP [dm3] 3R_12052254_SNP [dm6]	A	C	4.023e^-4	0.978	INTERGENIC
3L	19319744	3L_19319744_INS [dm3] 3L_19326644_INS [dm6]	A	AAAGGCTC	4.026e^-4	0.978	INTRON pip
2R	1190973	2R_1190973_SNP [dm3] 2R_5303468_SNP [dm6]	T	C	4.026e^-4	0.978	INTERGENIC
2R	18572942	2R_18572942_SNP [dm3] 2R_22685437_SNP [dm6]	T	C	4.032e^-4	0.978	UTR_3_PRIME ppa DOWNSTREAM ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	16294795	2R_16294795_SNP [dm3] 2R_20407290_SNP [dm6]	G	T	4.034e^-4	0.978	INTERGENIC
3R	4545518	3R_4545518_SNP [dm3] 3R_8719796_SNP [dm6]	T	G	4.040e^-4	0.978	INTRON CG8116 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19423653	X_19423653_SNP [dm3] X_19529620_SNP [dm6]	G	T	4.040e^-4	0.978	INTRON CoRest	TF binding site mE1_TFBS_chinmo
3L	3209673	3L_3209673_SNP [dm3] 3L_3209673_SNP [dm6]	T	C	4.041e^-4	0.978	SYNONYMOUS_CODING gry UPSTREAM CG32270 & 1 other	TF binding site mE1_TFBS_chinmo
2L	8789043	2L_8789043_SNP [dm3] 2L_8789043_SNP [dm6]	A	G	4.043e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18778192	2R_18778192_SNP [dm3] 2R_22890669_SNP [dm6]	T	C	4.050e^-4	0.978	INTRON MED23	TF binding site mE1_TFBS_cad
3L	9667540	3L_9667540_SNP [dm3] 3L_9674440_SNP [dm6]	G	C	4.053e^-4	0.978	INTRON fry
2R	7586016	2R_7586016_SNP [dm3] 2R_11698511_SNP [dm6]	G	T	4.053e^-4	0.978	DOWNSTREAM CG13197 & 1 other INTERGENIC
3R	17414915	3R_17414915_SNP [dm3] 3R_21589193_SNP [dm6]	A	T	4.054e^-4	0.978	INTRON InR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10837525	3L_10837525_SNP [dm3] 3L_10844425_SNP [dm6]	A	T	4.061e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21457547	X_21457547_SNP [dm3] X_21586520_SNP [dm6]	G	C	4.063e^-4	0.978	INTERGENIC
3L	21600167	3L_21600167_SNP [dm3] 3L_21607067_SNP [dm6]	G	A	4.065e^-4	0.978	INTRON TfAP-2
X	12029743	X_12029743_SNP [dm3] X_12135710_SNP [dm6]	A	G	4.085e^-4	0.978	INTRON Ten-a
2L	4051240	2L_4051240_SNP [dm3] 2L_4051240_SNP [dm6]	C	T	4.091e^-4	0.978	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3189040	2L_3189040_SNP [dm3] 2L_3189040_SNP [dm6]	A	C	4.094e^-4	0.978	INTRON CG34393
3L	2548958	3L_2548958_SNP [dm3] 3L_2548958_SNP [dm6]	T	C	4.099e^-4	0.978	INTRON Spn
2R	4637942	2R_4637942_SNP [dm3] 2R_8750437_SNP [dm6]	G	T	4.106e^-4	0.978	INTRON CG8740
2R	6536377	2R_6536377_SNP [dm3] 2R_10648872_SNP [dm6]	T	C	4.124e^-4	0.978	UPSTREAM CG12934 DOWNSTREAM Elp2 INTERGENIC
X	6125954	X_6125954_SNP [dm3] X_6231921_SNP [dm6]	T	A	4.133e^-4	0.978	UTR_3_PRIME CG14446
2R	14513552	2R_14513552_SNP [dm3] 2R_18626047_SNP [dm6]	A	C	4.134e^-4	0.978	SYNONYMOUS_CODING Sec6	TF binding site mE1_TFBS_sens
3R	17692876	3R_17692876_SNP [dm3] 3R_21867154_SNP [dm6]	C	T	4.136e^-4	0.978	SYNONYMOUS_CODING CG6569 UTR_3_PRIME CG6569 UPSTREAM Cby DOWNSTREAM lsn
2L	7000501	2L_7000501_SNP [dm3] 2L_7000501_SNP [dm6]	A	G	4.141e^-4	0.978	INTRON uif
2R	10603098	2R_10603098_SNP [dm3] 2R_14715593_SNP [dm6]	T	A	4.141e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	22722797	3L_22722797_SNP [dm3] 3L_22729697_SNP [dm6]	T	C	4.147e^-4	0.978	UPSTREAM CG32454 INTRON CG11367
3R	10557190	3R_10557190_SNP [dm3] 3R_14731468_SNP [dm6]	G	T	4.147e^-4	0.978	UTR_5_PRIME CG7530 UPSTREAM CG7530 DOWNSTREAM eff	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	13649600	X_13649600_SNP [dm3] X_13755567_SNP [dm6]	A	G	4.149e^-4	0.978	UPSTREAM Pdcd4 DOWNSTREAM CG32625 INTRON CR43833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25485365	3R_25485365_SNP [dm3] 3R_29659643_SNP [dm6]	A	G	4.154e^-4	0.978	INTRON Dop1R2
3L	7443740	3L_7443740_SNP [dm3] 3L_7450640_SNP [dm6]	A	G	4.156e^-4	0.978	UPSTREAM CG33278 INTRON CG42458	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6786179	2R_6786179_SNP [dm3] 2R_10898674_SNP [dm6]	C	T	4.157e^-4	0.978	SYNONYMOUS_CODING Rpb5 UPSTREAM CG7712	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15569955	2R_15569955_SNP [dm3] 2R_19682450_SNP [dm6]	G	C	4.193e^-4	0.978	UTR_3_PRIME CG34198	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13396502	3R_13396502_INS [dm3] 3R_17570780_INS [dm6]	C	CC	4.195e^-4	0.978	INTERGENIC
2L	5924771	2L_5924771_SNP [dm3] 2L_5924771_SNP [dm6]	C	G	4.206e^-4	0.978	DOWNSTREAM CR43926 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19679759	2L_19679759_SNP [dm3] 2L_19679759_SNP [dm6]	G	A	4.215e^-4	0.978	INTRON Lar
3L	21589491	3L_21589491_SNP [dm3] 3L_21596391_SNP [dm6]	T	G	4.219e^-4	0.978	DOWNSTREAM CR43940 INTRON TfAP-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21428296	X_21428296_SNP [dm3] X_21557269_SNP [dm6]	G	A	4.223e^-4	0.978	INTERGENIC
3R	25573275	3R_25573275_SNP [dm3] 3R_29747553_SNP [dm6]	G	A	4.224e^-4	0.978	DOWNSTREAM ATPsyn-gamma & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	12786789	3L_12786789_SNP [dm3] 3L_12793689_SNP [dm6]	A	G	4.225e^-4	0.978	INTRON Atg1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20269461	2L_20269461_SNP [dm3] 2L_20269461_SNP [dm6]	C	A	4.229e^-4	0.978	INTERGENIC
2R	10603093	2R_10603093_SNP [dm3] 2R_14715588_SNP [dm6]	C	G	4.236e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10836588	3L_10836588_SNP [dm3] 3L_10843488_SNP [dm6]	T	G	4.244e^-4	0.978	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21457416	X_21457416_SNP [dm3] X_21586389_SNP [dm6]	A	G	4.247e^-4	0.978	INTERGENIC
2R	14443323	2R_14443323_SNP [dm3] 2R_18555818_SNP [dm6]	C	T	4.249e^-4	0.978	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso
2R	6529757	2R_6529757_SNP [dm3] 2R_10642252_SNP [dm6]	A	G	4.250e^-4	0.978	DOWNSTREAM CG11883 INTRON Git
2L	7573349	2L_7573349_SNP [dm3] 2L_7573349_SNP [dm6]	A	C	4.250e^-4	0.978	INTRON RapGAP1
2L	10125804	2L_10125804_SNP [dm3] 2L_10125804_SNP [dm6]	G	T	4.251e^-4	0.978	DOWNSTREAM CG34109 INTRON CG44153
2R	15940813	2R_15940813_SNP [dm3] 2R_20053308_SNP [dm6]	G	A	4.254e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	9908150	2L_9908150_SNP [dm3] 2L_9908150_SNP [dm6]	A	G	4.257e^-4	0.978	DOWNSTREAM Etl1 INTRON CG13124	TF binding site BDTNP1_TFBS_dl
2L	6344311	2L_6344311_SNP [dm3] 2L_6344311_SNP [dm6]	G	A	4.263e^-4	0.978	INTRON Cpr	TF binding site mE1_TFBS_HSA
2R	17935551	2R_17935551_SNP [dm3] 2R_22048046_SNP [dm6]	G	A	4.270e^-4	0.978	INTERGENIC
3L	613515	3L_613515_SNP [dm3] 3L_613515_SNP [dm6]	G	A	4.275e^-4	0.978	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	9628506	3L_9628506_SNP [dm3] 3L_9635406_SNP [dm6]	T	C	4.279e^-4	0.978	INTRON fry
X	8616944	X_8616944_SNP [dm3] X_8722911_SNP [dm6]	A	G	4.280e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10052459	2R_10052459_SNP [dm3] 2R_14164954_SNP [dm6]	C	A	4.287e^-4	0.978	UPSTREAM CG8323 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12348012	2R_12348012_SNP [dm3] 2R_16460507_SNP [dm6]	C	T	4.288e^-4	0.978	INTERGENIC
2R	19435142	2R_19435142_SNP [dm3] 2R_23547619_SNP [dm6]	G	A	4.294e^-4	0.978	UTR_5_PRIME wmd UPSTREAM levy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	3768615	3L_3768615_SNP [dm3] 3L_3768615_SNP [dm6]	C	G	4.298e^-4	0.978	INTRON CG32264	TF binding site BDTNP1_TFBS_dl
2R	18555972	2R_18555972_SNP [dm3] 2R_22668467_SNP [dm6]	G	T	4.301e^-4	0.978	UPSTREAM CG13516 DOWNSTREAM CG30273 INTRON CG30269	TF binding site mE1_TFBS_cad
3R	13644715	3R_13644715_SNP [dm3] 3R_17818993_SNP [dm6]	C	T	4.303e^-4	0.978	INTRON tinc
2R	17649078	2R_17649078_SNP [dm3] 2R_21761573_SNP [dm6]	T	C	4.329e^-4	0.978	INTERGENIC
2L	15389262	2L_15389262_SNP [dm3] 2L_15389262_SNP [dm6]	C	T	4.334e^-4	0.978	INTERGENIC
X	16997266	X_16997266_SNP [dm3] X_17103233_SNP [dm6]	G	C	4.345e^-4	0.978	SYNONYMOUS_CODING CG4991
3R	10232419	3R_10232419_SNP [dm3] 3R_14406697_SNP [dm6]	A	G	4.346e^-4	0.978	INTRON cv-c
X	8100480	X_8100480_SNP [dm3] X_8206447_SNP [dm6]	C	T	4.355e^-4	0.978	INTRON sdt
3R	8148562	3R_8148562_SNP [dm3] 3R_12322840_SNP [dm6]	G	A	4.356e^-4	0.978	UPSTREAM CG10013 & 1 other INTERGENIC
3L	5898563	3L_5898563_SNP [dm3] 3L_5905463_SNP [dm6]	C	T	4.358e^-4	0.978	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486
X	6474041	X_6474041_SNP [dm3] X_6580008_SNP [dm6]	G	A	4.363e^-4	0.978	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21457546	X_21457546_SNP [dm3] X_21586519_SNP [dm6]	C	G	4.372e^-4	0.978	INTERGENIC
2L	7843462	2L_7843462_SNP [dm3] 2L_7843462_SNP [dm6]	A	C	4.374e^-4	0.978	INTERGENIC
3R	24175714	3R_24175714_SNP [dm3] 3R_28349992_SNP [dm6]	G	A	4.375e^-4	0.978	INTERGENIC
3L	4818676	3L_4818676_SNP [dm3] 3L_4818676_SNP [dm6]	C	T	4.377e^-4	0.978	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_chinmo
3L	16319327	3L_16319327_SNP [dm3] 3L_16326227_SNP [dm6]	G	C	4.378e^-4	0.978	UTR_5_PRIME CG13040 UTR_3_PRIME CG13039 UPSTREAM CG13040
2L	6487447	2L_6487447_SNP [dm3] 2L_6487447_SNP [dm6]	C	A	4.385e^-4	0.978	UTR_3_PRIME DLP & 1 other DOWNSTREAM KFase & 1 other	TF binding site mE1_TFBS_cad
3L	11365371	3L_11365371_SNP [dm3] 3L_11372271_SNP [dm6]	A	C	4.385e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	10430948	2L_10430948_SNP [dm3] 2L_10430948_SNP [dm6]	G	C	4.387e^-4	0.978	UPSTREAM TfIIB & 1 other DOWNSTREAM CG5188 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1530930	3L_1530930_SNP [dm3] 3L_1530930_SNP [dm6]	A	G	4.396e^-4	0.978	SYNONYMOUS_CODING Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	18553634	2R_18553634_SNP [dm3] 2R_22666129_SNP [dm6]	T	A	4.407e^-4	0.978	UTR_3_PRIME CG42867 UPSTREAM CR42868 EXON CR45269
2R	11299553	2R_11299553_SNP [dm3] 2R_15412048_SNP [dm6]	C	T	4.412e^-4	0.978	INTRON CG43729
2L	9825822	2L_9825822_SNP [dm3] 2L_9825822_SNP [dm6]	C	A	4.416e^-4	0.978	INTRON nAChRalpha6
2R	16364638	2R_16364638_SNP [dm3] 2R_20477133_SNP [dm6]	A	C	4.422e^-4	0.978	INTRON CG12484
X	6451143	X_6451143_SNP [dm3] X_6557110_SNP [dm6]	A	C	4.427e^-4	0.978	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	10125813	2L_10125813_SNP [dm3] 2L_10125813_SNP [dm6]	C	T	4.431e^-4	0.978	DOWNSTREAM CG34109 INTRON CG44153
2R	2452853	2R_2452853_SNP [dm3] 2R_6565348_SNP [dm6]	A	G	4.450e^-4	0.978	INTRON jing
3R	15302837	3R_15302837_SNP [dm3] 3R_19477115_SNP [dm6]	C	T	4.451e^-4	0.978	SPLICE_SITE_REGION Dys INTRON Dys
2L	19683546	2L_19683546_SNP [dm3] 2L_19683546_SNP [dm6]	C	T	4.459e^-4	0.978	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	20299279	2R_20299279_SNP [dm3] 2R_24411756_SNP [dm6]	T	C	4.459e^-4	0.978	UPSTREAM CG45069 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	20807070	3R_20807070_SNP [dm3] 3R_24981348_SNP [dm6]	A	G	4.462e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	18555985	2R_18555985_SNP [dm3] 2R_22668480_SNP [dm6]	C	T	4.462e^-4	0.978	UPSTREAM CG13516 DOWNSTREAM CG30273 INTRON CG30269	TF binding site mE1_TFBS_cad
2L	5278895	2L_5278895_SNP [dm3] 2L_5278895_SNP [dm6]	G	C	4.468e^-4	0.978	UTR_5_PRIME Bub1 UPSTREAM Bub1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	18957924	3L_18957924_DEL [dm3] 3L_18964824_DEL [dm6]	TTATAAGTTGCT...	T	4.472e^-4	0.978	INTERGENIC
3L	12374674	3L_12374674_DEL [dm3] 3L_12381574_DEL [dm6]	GAAATTCTTTAACAAGGCGA...	G	4.473e^-4	0.978	INTRON Ncc69	TF binding site mE1_TFBS_inv
2R	14791544	2R_14791544_DEL [dm3] 2R_18904039_DEL [dm6]	TTTATTTGTGACAAC...	T	4.473e^-4	0.978	INTRON sano
X	5893509	X_5893509_SNP [dm3] X_5999476_SNP [dm6]	G	T	4.480e^-4	0.978	SYNONYMOUS_CODING CG4766
2R	7138122	2R_7138122_SNP [dm3] 2R_11250617_SNP [dm6]	A	T	4.480e^-4	0.978	SYNONYMOUS_CODING Or47a DOWNSTREAM CG43112
X	21456873	X_21456873_DEL [dm3] X_21585846_DEL [dm6]	CTGCCGCAACC...	C	4.481e^-4	0.978	INTERGENIC	transposable element FlyBase
X	2994651	X_2994651_DEL [dm3] X_3100618_DEL [dm6]	AA	A	4.482e^-4	0.978	INTRON kirre	insulator Insulator_Class_II.mE01
2L	17292496	2L_17292496_DEL [dm3] 2L_17292496_DEL [dm6]	AA	A	4.485e^-4	0.978	UPSTREAM CG6380 INTERGENIC
3L	4387017	3L_4387017_SNP [dm3] 3L_4387017_SNP [dm6]	G	A	4.505e^-4	0.978	INTRON slow
3L	1309109	3L_1309109_SNP [dm3] 3L_1309109_SNP [dm6]	A	G	4.516e^-4	0.978	SYNONYMOUS_CODING CG2469	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7843434	2L_7843434_SNP [dm3] 2L_7843434_SNP [dm6]	G	C	4.516e^-4	0.978	INTERGENIC
2R	6546014	2R_6546014_SNP [dm3] 2R_10658509_SNP [dm6]	C	A	4.545e^-4	0.978	UPSTREAM CR44452 INTERGENIC
3L	4818658	3L_4818658_SNP [dm3] 3L_4818658_SNP [dm6]	T	C	4.552e^-4	0.978	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_chinmo
2R	2554786	2R_2554786_SNP [dm3] 2R_6667281_SNP [dm6]	C	T	4.562e^-4	0.978	SYNONYMOUS_CODING Adf1 UPSTREAM CG15908	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7573335	2L_7573335_SNP [dm3] 2L_7573335_SNP [dm6]	A	G	4.563e^-4	0.978	INTRON RapGAP1
2L	14328462	2L_14328462_SNP [dm3] 2L_14328462_SNP [dm6]	G	C	4.565e^-4	0.978	UTR_5_PRIME ms_2_34Fe DOWNSTREAM wb
2R	6536040	2R_6536040_SNP [dm3] 2R_10648535_SNP [dm6]	C	G	4.569e^-4	0.978	SYNONYMOUS_CODING Elp2 UPSTREAM CG12934
2L	5718980	2L_5718980_SNP [dm3] 2L_5718980_SNP [dm6]	T	C	4.573e^-4	0.978	SYNONYMOUS_CODING CG11149 DOWNSTREAM CG34011	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9286685	2L_9286685_SNP [dm3] 2L_9286685_SNP [dm6]	T	C	4.579e^-4	0.978	INTRON Ggamma30A
2L	3843384	2L_3843384_SNP [dm3] 2L_3843384_SNP [dm6]	G	A	4.584e^-4	0.978	INTERGENIC	regulatory region REDfly_CRMs
2L	6344318	2L_6344318_SNP [dm3] 2L_6344318_SNP [dm6]	A	G	4.585e^-4	0.978	INTRON Cpr	TF binding site mE1_TFBS_HSA
2R	17649122	2R_17649122_SNP [dm3] 2R_21761617_SNP [dm6]	T	G	4.586e^-4	0.978	INTERGENIC
2R	2438870	2R_2438870_SNP [dm3] 2R_6551365_SNP [dm6]	T	A	4.590e^-4	0.978	INTRON jing
X	5443755	X_5443755_SNP [dm3] X_5549722_SNP [dm6]	T	A	4.591e^-4	0.978	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10083323	3R_10083323_SNP [dm3] 3R_14257601_SNP [dm6]	G	T	4.591e^-4	0.978	DOWNSTREAM CG43179 INTRON Aats-met
2R	10030337	2R_10030337_SNP [dm3] 2R_14142832_SNP [dm6]	C	A	4.595e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	9680213	2R_9680213_DEL [dm3] 2R_13792708_DEL [dm6]	AAA	A	4.602e^-4	0.978	DOWNSTREAM CR43811 INTERGENIC
3R	17066418	3R_17066418_DEL [dm3] 3R_21240696_DEL [dm6]	TT	T	4.608e^-4	0.978	INTERGENIC	regulatory region REDfly_CRMs
3R	18392927	3R_18392927_SNP [dm3] 3R_22567205_SNP [dm6]	T	C	4.619e^-4	0.978	INTERGENIC
X	3701383	X_3701383_SNP [dm3] X_3807350_SNP [dm6]	T	C	4.621e^-4	0.978	INTRON fd3F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10389280	3R_10389280_SNP [dm3] 3R_14563558_SNP [dm6]	G	T	4.632e^-4	0.978	DOWNSTREAM CG14851 & 1 other INTERGENIC
2R	6535945	2R_6535945_SNP [dm3] 2R_10648440_SNP [dm6]	C	T	4.633e^-4	0.978	UPSTREAM CG12934 INTRON Elp2
2R	12602148	2R_12602148_SNP [dm3] 2R_16714643_SNP [dm6]	T	G	4.634e^-4	0.978	INTRON CG30463
2L	8063303	2L_8063303_SNP [dm3] 2L_8063303_SNP [dm6]	T	A	4.639e^-4	0.978	SYNONYMOUS_CODING poe
2L	18923939	2L_18923939_SNP [dm3] 2L_18923939_SNP [dm6]	G	A	4.653e^-4	0.978	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	8276362	3L_8276362_SNP [dm3] 3L_8283262_SNP [dm6]	A	G	4.660e^-4	0.978	DOWNSTREAM Dscam4 INTRON cert
2L	5279698	2L_5279698_SNP [dm3] 2L_5279698_SNP [dm6]	G	A	4.663e^-4	0.978	SYNONYMOUS_CODING Bub1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26115814	3R_26115814_SNP [dm3] 3R_30290092_SNP [dm6]	G	C	4.664e^-4	0.978	INTRON hdc
3L	10964480	3L_10964480_SNP [dm3] 3L_10971380_SNP [dm6]	T	C	4.666e^-4	0.978	INTERGENIC
2R	8561096	2R_8561096_SNP [dm3] 2R_12673591_SNP [dm6]	C	A	4.668e^-4	0.978	INTRON CG42708	TF binding site mE1_TFBS_cad
2R	15540055	2R_15540055_SNP [dm3] 2R_19652550_SNP [dm6]	C	T	4.670e^-4	0.978	UPSTREAM CR44213 INTRON Ir56e EXON CR44212
2R	14513549	2R_14513549_SNP [dm3] 2R_18626044_SNP [dm6]	C	T	4.677e^-4	0.978	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site mE1_TFBS_sens
X	1221158	X_1221158_SNP [dm3] X_1327125_SNP [dm6]	G	C	4.680e^-4	0.978	NON_SYNONYMOUS_CODING fs_1_N
3L	501068	3L_501068_SNP [dm3] 3L_501068_SNP [dm6]	A	G	4.683e^-4	0.978	UPSTREAM CG34267 INTRON klar & 1 other
2L	1850586	2L_1850586_SNP [dm3] 2L_1850586_SNP [dm6]	G	T	4.684e^-4	0.978	INTRON wry
2L	17292501	2L_17292501_SNP [dm3] 2L_17292501_SNP [dm6]	G	A	4.685e^-4	0.978	UPSTREAM CG6380 INTERGENIC
2L	1635430	2L_1635430_SNP [dm3] 2L_1635430_SNP [dm6]	G	A	4.686e^-4	0.978	INTERGENIC
2R	3443030	2R_3443030_SNP [dm3] 2R_7555525_SNP [dm6]	T	G	4.688e^-4	0.978	INTRON Corin
X	13680288	X_13680288_SNP [dm3] X_13786255_SNP [dm6]	G	T	4.689e^-4	0.978	INTRON inaE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12279370	3L_12279370_SNP [dm3] 3L_12286270_SNP [dm6]	A	G	4.699e^-4	0.978	INTERGENIC
3L	7154297	3L_7154297_SNP [dm3] 3L_7161197_SNP [dm6]	T	G	4.710e^-4	0.978	UTR_3_PRIME Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1820135	2R_1820135_SNP [dm3] 2R_5932630_SNP [dm6]	G	A	4.716e^-4	0.978	INTERGENIC
2L	6344173	2L_6344173_SNP [dm3] 2L_6344173_SNP [dm6]	C	T	4.716e^-4	0.978	SYNONYMOUS_CODING Cpr	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_h mE1_TFBS_HSA
2L	17327630	2L_17327630_SNP [dm3] 2L_17327630_SNP [dm6]	C	G	4.728e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14963237	X_14963237_SNP [dm3] X_15069204_SNP [dm6]	T	A	4.729e^-4	0.978	UTR_3_PRIME Lsd-2 DOWNSTREAM dob
2L	4676278	2L_4676278_SNP [dm3] 2L_4676278_SNP [dm6]	T	A	4.748e^-4	0.978	INTERGENIC
3R	9945829	3R_9945829_SNP [dm3] 3R_14120107_SNP [dm6]	A	C	4.749e^-4	0.978	SYNONYMOUS_CODING Abi	TF binding site mE1_TFBS_cad
2R	13143384	2R_13143384_SNP [dm3] 2R_17255879_SNP [dm6]	A	T	4.750e^-4	0.978	UPSTREAM CR43660 DOWNSTREAM CG43272 INTRON mbl
3L	4243754	3L_4243754_SNP [dm3] 3L_4243754_SNP [dm6]	T	C	4.758e^-4	0.978	INTRON pav	TF binding site mE1_TFBS_sens
3R	21859853	3R_21859853_SNP [dm3] 3R_26034131_SNP [dm6]	T	C	4.767e^-4	0.978	DOWNSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
2R	14979736	2R_14979736_SNP [dm3] 2R_19092231_SNP [dm6]	A	G	4.774e^-4	0.978	INTRON 5-HT1A	insulator Insulator_Class_II.mE01
3R	23560984	3R_23560984_SNP [dm3] 3R_27735262_SNP [dm6]	G	T	4.784e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16761869	X_16761869_SNP [dm3] X_16867836_SNP [dm6]	G	A	4.798e^-4	0.978	INTRON CG13003
3R	4545433	3R_4545433_SNP [dm3] 3R_8719711_SNP [dm6]	A	G	4.803e^-4	0.978	INTRON CG8116 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7154304	3L_7154304_SNP [dm3] 3L_7161204_SNP [dm6]	T	A	4.803e^-4	0.978	UTR_3_PRIME Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5437283	3L_5437283_SNP [dm3] 3L_5444183_SNP [dm6]	C	G	4.805e^-4	0.978	INTERGENIC
3L	18034778	3L_18034778_SNP [dm3] 3L_18041678_SNP [dm6]	A	G	4.806e^-4	0.978	UTR_3_PRIME CG32192 INTRON Eip75B	TF binding site mE1_TFBS_zfh1
2R	19414287	2R_19414287_SNP [dm3] 2R_23526764_SNP [dm6]	C	G	4.819e^-4	0.978	INTRON mi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13242522	3R_13242522_SNP [dm3] 3R_17416800_SNP [dm6]	T	A	4.820e^-4	0.978	UPSTREAM CG33333 DOWNSTREAM CG5866 INTERGENIC
2L	6497000	2L_6497000_SNP [dm3] 2L_6497000_SNP [dm6]	G	T	4.820e^-4	0.978	UPSTREAM CG9550 DOWNSTREAM CG31638 INTERGENIC
3L	2346288	3L_2346288_SNP [dm3] 3L_2346288_SNP [dm6]	C	T	4.828e^-4	0.978	DOWNSTREAM MsR1 INTERGENIC
2L	7843447	2L_7843447_SNP [dm3] 2L_7843447_SNP [dm6]	C	T	4.833e^-4	0.978	INTERGENIC
2R	1088036	2R_1088036_SNP [dm3] 2R_5200531_SNP [dm6]	T	C	4.836e^-4	0.978	INTRON Nipped-A
3L	16319301	3L_16319301_SNP [dm3] 3L_16326201_SNP [dm6]	C	T	4.839e^-4	0.978	UTR_5_PRIME CG13040 UTR_3_PRIME CG13039 UPSTREAM CG13040
2R	1362632	2R_1362632_SNP [dm3] 2R_5475127_SNP [dm6]	G	T	4.841e^-4	0.978	INTRON CG30440
2L	12090973	2L_12090973_SNP [dm3] 2L_12090973_SNP [dm6]	A	T	4.847e^-4	0.978	UPSTREAM Pex19 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	501056	3L_501056_SNP [dm3] 3L_501056_SNP [dm6]	A	C	4.849e^-4	0.978	UPSTREAM CG34267 INTRON klar & 1 other
2R	9763431	2R_9763431_SNP [dm3] 2R_13875926_SNP [dm6]	G	T	4.855e^-4	0.978	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3R	20979552	3R_20979552_SNP [dm3] 3R_25153830_SNP [dm6]	T	C	4.861e^-4	0.978	INTERGENIC
3R	17698011	3R_17698011_SNP [dm3] 3R_21872289_SNP [dm6]	G	A	4.861e^-4	0.978	INTRON CG31431
3R	8183878	3R_8183878_SNP [dm3] 3R_12358156_SNP [dm6]	G	A	4.875e^-4	0.978	INTERGENIC
3R	18229505	3R_18229505_SNP [dm3] 3R_22403783_SNP [dm6]	T	A	4.876e^-4	0.978	INTRON CG13856
3R	8089899	3R_8089899_SNP [dm3] 3R_12264177_SNP [dm6]	A	T	4.904e^-4	0.978	INTRON svp
3L	898326	3L_898326_SNP [dm3] 3L_898326_SNP [dm6]	C	T	4.905e^-4	0.978	SYNONYMOUS_CODING CG34057 DOWNSTREAM CG34056	TF binding site mE1_TFBS_sens
2R	12563207	2R_12563207_SNP [dm3] 2R_16675702_SNP [dm6]	A	C	4.907e^-4	0.978	INTRON CG30463
2L	12208929	2L_12208929_SNP [dm3] 2L_12208929_SNP [dm6]	T	C	4.919e^-4	0.978	SYNONYMOUS_CODING CG31759 INTRON aret
2L	712546	2L_712546_SNP [dm3] 2L_712546_SNP [dm6]	T	A	4.933e^-4	0.978	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14330296	3L_14330296_SNP [dm3] 3L_14337196_SNP [dm6]	A	C	4.939e^-4	0.978	INTRON fz
2L	19591416	2L_19591416_SNP [dm3] 2L_19591416_SNP [dm6]	T	C	4.939e^-4	0.978	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12237551	3L_12237551_SNP [dm3] 3L_12244451_SNP [dm6]	C	T	4.939e^-4	0.978	INTRON app
2L	684041	2L_684041_SNP [dm3] 2L_684041_SNP [dm6]	C	A	4.942e^-4	0.978	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10358462	3R_10358462_SNP [dm3] 3R_14532740_SNP [dm6]	A	G	4.958e^-4	0.978	INTRON Pde6
3R	13882630	3R_13882630_SNP [dm3] 3R_18056908_SNP [dm6]	G	A	4.962e^-4	0.978	INTERGENIC
2R	19404136	2R_19404136_DEL [dm3] 2R_23516613_DEL [dm6]	TTG	GA	4.965e^-4	0.978	INTERGENIC
3R	27126901	3R_27126901_DEL [dm3] 3R_31301179_DEL [dm6]	CCC	C	4.970e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11079389	2L_11079389_SNP [dm3] 2L_11079389_SNP [dm6]	A	G	4.982e^-4	0.978	INTRON AstC
X	6641463	X_6641463_SNP [dm3] X_6747430_SNP [dm6]	T	G	4.982e^-4	0.978	UPSTREAM CG14439 EXON CR44964	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	5431049	2L_5431049_SNP [dm3] 2L_5431049_SNP [dm6]	G	A	4.988e^-4	0.978	UPSTREAM CR43713 INTERGENIC	TF binding site mE1_TFBS_sens
3L	6692907	3L_6692907_SNP [dm3] 3L_6699807_SNP [dm6]	G	A	4.996e^-4	0.978	INTRON SP1173
3R	25485391	3R_25485391_SNP [dm3] 3R_29659669_SNP [dm6]	G	A	4.997e^-4	0.978	INTRON Dop1R2
X	5708900	X_5708900_SNP [dm3] X_5814867_SNP [dm6]	G	A	4.999e^-4	0.978	UTR_3_PRIME CG15766
3L	3022256	3L_3022256_SNP [dm3] 3L_3022256_SNP [dm6]	G	A	5.007e^-4	0.978	INTERGENIC
2R	19460827	2R_19460827_SNP [dm3] 2R_23573304_SNP [dm6]	C	T	5.010e^-4	0.978	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17066445	3R_17066445_SNP [dm3] 3R_21240723_SNP [dm6]	A	G	5.021e^-4	0.978	INTERGENIC	regulatory region REDfly_CRMs
2L	1278260	2L_1278260_SNP [dm3] 2L_1278260_SNP [dm6]	A	T	5.023e^-4	0.978	INTRON robo3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2303135	2L_2303135_SNP [dm3] 2L_2303135_SNP [dm6]	T	A	5.032e^-4	0.978	INTERGENIC
2L	12773385	2L_12773385_SNP [dm3] 2L_12773385_SNP [dm6]	C	T	5.036e^-4	0.978	INTERGENIC
2L	19686695	2L_19686695_SNP [dm3] 2L_19686695_SNP [dm6]	C	T	5.038e^-4	0.978	INTRON Lar
3R	10354935	3R_10354935_SNP [dm3] 3R_14529213_SNP [dm6]	G	A	5.052e^-4	0.978	SYNONYMOUS_CODING Pde6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	670828	2L_670828_SNP [dm3] 2L_670828_SNP [dm6]	G	A	5.066e^-4	0.978	INTRON ds
2L	20430268	2L_20430268_SNP [dm3] 2L_20430268_SNP [dm6]	G	T	5.074e^-4	0.978	INTRON CG31688
2R	18910253	2R_18910253_SNP [dm3] 2R_23022730_SNP [dm6]	A	T	5.076e^-4	0.978	INTRON twi & 1 other
3R	8175746	3R_8175746_SNP [dm3] 3R_12350024_SNP [dm6]	C	T	5.078e^-4	0.978	DOWNSTREAM CG10041 INTRON CG10038
2R	9184100	2R_9184100_SNP [dm3] 2R_13296595_SNP [dm6]	T	A	5.085e^-4	0.978	UPSTREAM Dh31-R DOWNSTREAM CG4734 INTERGENIC
2L	1781765	2L_1781765_SNP [dm3] 2L_1781765_SNP [dm6]	A	G	5.087e^-4	0.978	INTERGENIC
3L	2030638	3L_2030638_SNP [dm3] 3L_2030638_SNP [dm6]	G	A	5.092e^-4	0.978	INTERGENIC
2L	4676222	2L_4676222_INS [dm3] 2L_4676222_INS [dm6]	T	TAGAAATCAT	5.092e^-4	0.978	INTERGENIC
2L	6410670	2L_6410670_SNP [dm3] 2L_6410670_SNP [dm6]	T	C	5.102e^-4	0.978	INTRON CG42368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21139932	X_21139932_INS [dm3] X_21268905_INS [dm6]	A	AA	5.107e^-4	0.978	INTRON CG32521
2L	19586823	2L_19586823_SNP [dm3] 2L_19586823_SNP [dm6]	G	A	5.110e^-4	0.978	UTR_5_PRIME Lar UPSTREAM Lar DOWNSTREAM CG10366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	16443787	2R_16443787_SNP [dm3] 2R_20556282_SNP [dm6]	C	T	5.110e^-4	0.978	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	835702	3L_835702_DEL [dm3] 3L_835702_DEL [dm6]	CA	T	5.112e^-4	0.978	UTR_5_PRIME CG42554 DOWNSTREAM CG42553 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9083772	3R_9083772_SNP [dm3] 3R_13258050_SNP [dm6]	C	T	5.116e^-4	0.978	INTRON Ace
2L	1781838	2L_1781838_INS [dm3] 2L_1781838_INS [dm6]	T	TT	5.122e^-4	0.978	INTERGENIC
2L	16519842	2L_16519842_SNP [dm3] 2L_16519842_SNP [dm6]	T	C	5.124e^-4	0.978	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	1744384	2L_1744384_SNP [dm3] 2L_1744384_SNP [dm6]	T	C	5.133e^-4	0.978	INTRON CG17646
3L	4243825	3L_4243825_SNP [dm3] 3L_4243825_SNP [dm6]	C	T	5.138e^-4	0.978	SYNONYMOUS_CODING pav	TF binding site mE1_TFBS_sens
2R	18978711	2R_18978711_SNP [dm3] 2R_23091188_SNP [dm6]	A	C	5.142e^-4	0.978	INTRON CG9876	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	18459277	3R_18459277_SNP [dm3] 3R_22633555_SNP [dm6]	A	G	5.157e^-4	0.978	UPSTREAM loco INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19207254	3R_19207254_SNP [dm3] 3R_23381532_SNP [dm6]	A	G	5.164e^-4	0.978	INTRON CG4393	TF binding site mE1_TFBS_cad
3L	9667388	3L_9667388_SNP [dm3] 3L_9674288_SNP [dm6]	G	A	5.164e^-4	0.978	INTRON fry
2R	7346578	2R_7346578_SNP [dm3] 2R_11459073_SNP [dm6]	A	T	5.165e^-4	0.978	SYNONYMOUS_CODING E_Pc_	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12773365	2L_12773365_SNP [dm3] 2L_12773365_SNP [dm6]	A	T	5.177e^-4	0.978	INTERGENIC
2R	8898161	2R_8898161_SNP [dm3] 2R_13010656_SNP [dm6]	G	A	5.177e^-4	0.978	INTERGENIC
2R	17649135	2R_17649135_SNP [dm3] 2R_21761630_SNP [dm6]	T	A	5.177e^-4	0.978	INTERGENIC
3L	4828230	3L_4828230_SNP [dm3] 3L_4828230_SNP [dm6]	A	C	5.178e^-4	0.978	DOWNSTREAM CG13708 INTRON Aats-leu
3L	4243647	3L_4243647_SNP [dm3] 3L_4243647_SNP [dm6]	C	T	5.190e^-4	0.978	SYNONYMOUS_CODING pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	13145394	2R_13145394_SNP [dm3] 2R_17257889_SNP [dm6]	G	A	5.193e^-4	0.978	UPSTREAM CG43108 INTRON mbl
2R	18903359	2R_18903359_SNP [dm3] 2R_23015836_SNP [dm6]	C	T	5.195e^-4	0.978	INTRON twi & 1 other
X	10283793	X_10283793_SNP [dm3] X_10389760_SNP [dm6]	G	A	5.196e^-4	0.978	INTRON flw
2L	9067740	2L_9067740_INS [dm3] 2L_9067740_INS [dm6]	T	TGT	5.196e^-4	0.978	INTRON CG31708
X	8100495	X_8100495_SNP [dm3] X_8206462_SNP [dm6]	G	A	5.198e^-4	0.978	INTRON sdt
2L	4159244	2L_4159244_SNP [dm3] 2L_4159244_SNP [dm6]	G	T	5.217e^-4	0.978	INTERGENIC
2L	6940381	2L_6940381_SNP [dm3] 2L_6940381_SNP [dm6]	T	A	5.225e^-4	0.978	INTRON CG18304	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	11857099	X_11857099_INS [dm3] X_11963066_INS [dm6]	G	GAAAAAG	5.227e^-4	0.978	INTRON cac
X	17269665	X_17269665_SNP [dm3] X_17375632_SNP [dm6]	C	A	5.231e^-4	0.978	INTERGENIC
3R	18905420	3R_18905420_SNP [dm3] 3R_23079698_SNP [dm6]	A	G	5.263e^-4	0.978	INTRON CG13830
2R	20212877	2R_20212877_SNP [dm3] 2R_24325354_SNP [dm6]	C	T	5.272e^-4	0.978	EXON CR44810
2L	11005898	2L_11005898_SNP [dm3] 2L_11005898_SNP [dm6]	T	A	5.278e^-4	0.978	INTRON Nup154	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15427526	3L_15427526_SNP [dm3] 3L_15434426_SNP [dm6]	C	T	5.287e^-4	0.978	INTERGENIC
2R	10685213	2R_10685213_SNP [dm3] 2R_14797708_SNP [dm6]	G	A	5.289e^-4	0.978	UPSTREAM kn INTRON kn
2L	17382375	2L_17382375_SNP [dm3] 2L_17382375_SNP [dm6]	A	G	5.291e^-4	0.978	INTRON Lrch	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11987430	3L_11987430_SNP [dm3] 3L_11994330_SNP [dm6]	T	A	5.307e^-4	0.978	NON_SYNONYMOUS_CODING Grip163	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7597444	2L_7597444_DEL [dm3] 2L_7597444_DEL [dm6]	TT	T	5.311e^-4	0.978	INTERGENIC	silencer mE1_HDAC_PRE
X	6535191	X_6535191_SNP [dm3] X_6641158_SNP [dm6]	T	C	5.313e^-4	0.978	INTRON pigs
3R	10342547	3R_10342547_SNP [dm3] 3R_14516825_SNP [dm6]	C	T	5.316e^-4	0.978	UPSTREAM CG34273 INTRON Pde6
2L	7805566	2L_7805566_SNP [dm3] 2L_7805566_SNP [dm6]	T	A	5.323e^-4	0.978	SYNONYMOUS_CODING cdc14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19652582	2L_19652582_SNP [dm3] 2L_19652582_SNP [dm6]	C	A	5.334e^-4	0.978	INTRON Lar
3L	13225296	3L_13225296_SNP [dm3] 3L_13232196_SNP [dm6]	A	T	5.341e^-4	0.978	INTRON caps
2R	17649152	2R_17649152_SNP [dm3] 2R_21761647_SNP [dm6]	A	T	5.355e^-4	0.978	INTERGENIC
3R	4599852	3R_4599852_SNP [dm3] 3R_8774130_SNP [dm6]	C	G	5.359e^-4	0.978	DOWNSTREAM Pif1B & 2 others INTERGENIC

By genomic position
Variant impact
Gene name

mn_Week1_Fecundity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results