DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.577e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.06343
In_3R_K	0.05493

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2468 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	12797662	2L_12797662_SNP [dm3] 2L_12797662_SNP [dm6]	C	G	1.461e^-7	0.18	INTERGENIC
2L	12797679	2L_12797679_SNP [dm3] 2L_12797679_SNP [dm6]	G	T	2.321e^-7	0.18	INTERGENIC
3L	11486883	3L_11486883_SNP [dm3] 3L_11493783_SNP [dm6]	C	T	3.981e^-7	0.18	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11486233	3L_11486233_SNP [dm3] 3L_11493133_SNP [dm6]	G	A	5.018e^-7	0.18	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12797294	2L_12797294_SNP [dm3] 2L_12797294_SNP [dm6]	G	A	5.231e^-7	0.18	INTERGENIC
3L	11485602	3L_11485602_SNP [dm3] 3L_11492502_SNP [dm6]	G	T	6.144e^-7	0.18	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12797646	2L_12797646_SNP [dm3] 2L_12797646_SNP [dm6]	C	T	6.823e^-7	0.18	INTERGENIC
2L	12799611	2L_12799611_SNP [dm3] 2L_12799611_SNP [dm6]	T	C	7.764e^-7	0.18	INTERGENIC
3L	11486384	3L_11486384_SNP [dm3] 3L_11493284_SNP [dm6]	T	C	9.154e^-7	0.18	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11486774	3L_11486774_SNP [dm3] 3L_11493674_SNP [dm6]	C	T	9.596e^-7	0.18	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11486237	3L_11486237_SNP [dm3] 3L_11493137_SNP [dm6]	A	T	1.269e^-6	0.189	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12994349	X_12994349_SNP [dm3] X_13100316_SNP [dm6]	C	T	1.288e^-6	0.189	INTRON CG43313
3L	11485541	3L_11485541_SNP [dm3] 3L_11492441_SNP [dm6]	G	T	1.309e^-6	0.189	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11486451	3L_11486451_SNP [dm3] 3L_11493351_SNP [dm6]	C	A	1.511e^-6	0.202	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12718175	2L_12718175_SNP [dm3] 2L_12718175_SNP [dm6]	T	A	2.382e^-6	0.246	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
3L	11486235	3L_11486235_SNP [dm3] 3L_11493135_SNP [dm6]	A	G	2.433e^-6	0.246	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12718259	2L_12718259_SNP [dm3] 2L_12718259_SNP [dm6]	G	A	2.453e^-6	0.246	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
2L	12799498	2L_12799498_SNP [dm3] 2L_12799498_SNP [dm6]	C	T	2.506e^-6	0.246	INTERGENIC
3R	2101021	3R_2101021_SNP [dm3] 3R_6275299_SNP [dm6]	T	C	2.707e^-6	0.246	INTERGENIC
3L	11485392	3L_11485392_SNP [dm3] 3L_11492292_SNP [dm6]	G	C	2.749e^-6	0.246	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12797629	2L_12797629_SNP [dm3] 2L_12797629_SNP [dm6]	G	C	2.814e^-6	0.246	INTERGENIC
3L	11486247	3L_11486247_SNP [dm3] 3L_11493147_SNP [dm6]	A	C	3.285e^-6	0.246	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11486441	3L_11486441_DEL [dm3] 3L_11493341_DEL [dm6]	AT	A	3.308e^-6	0.246	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11486366	3L_11486366_SNP [dm3] 3L_11493266_SNP [dm6]	G	A	3.327e^-6	0.246	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7127891	2R_7127891_SNP [dm3] 2R_11240386_SNP [dm6]	G	T	3.371e^-6	0.246	UPSTREAM CG13215 INTERGENIC
2R	15400867	2R_15400867_SNP [dm3] 2R_19513362_SNP [dm6]	G	A	3.518e^-6	0.246	SYNONYMOUS_CODING Ir56d
2R	12708962	2R_12708962_SNP [dm3] 2R_16821457_SNP [dm6]	G	A	3.541e^-6	0.246	INTERGENIC
3L	11486181	3L_11486181_SNP [dm3] 3L_11493081_SNP [dm6]	G	T	3.844e^-6	0.258	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15777852	2L_15777852_DEL [dm3] 2L_15777852_DEL [dm6]	ACA	G	4.725e^-6	0.282	UPSTREAM CG43760 INTERGENIC	TF binding site mE1_TFBS_kn
2L	12797735	2L_12797735_SNP [dm3] 2L_12797735_SNP [dm6]	A	T	4.767e^-6	0.282	INTERGENIC
2L	12799708	2L_12799708_SNP [dm3] 2L_12799708_SNP [dm6]	G	A	4.794e^-6	0.282	INTERGENIC
2R	2069605	2R_2069605_SNP [dm3] 2R_6182100_SNP [dm6]	G	A	4.831e^-6	0.282	UTR_3_PRIME Ptr UPSTREAM CG11211	regulatory region REDfly_CRMs
2L	12799499	2L_12799499_SNP [dm3] 2L_12799499_SNP [dm6]	C	T	4.957e^-6	0.282	INTERGENIC
3R	17825112	3R_17825112_INS [dm3] 3R_21999390_INS [dm6]	A	AA	5.358e^-6	0.296	INTRON Eip93F
2R	2066410	2R_2066410_SNP [dm3] 2R_6178905_SNP [dm6]	T	C	5.748e^-6	0.301	UPSTREAM tRNA:R2:42Aa & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	15777856	2L_15777856_SNP [dm3] 2L_15777856_SNP [dm6]	A	G	6.217e^-6	0.301	INTERGENIC	TF binding site mE1_TFBS_kn
2L	6565965	2L_6565965_SNP [dm3] 2L_6565965_SNP [dm6]	A	G	6.279e^-6	0.301	SYNONYMOUS_CODING CG13766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	2438803	2R_2438803_SNP [dm3] 2R_6551298_SNP [dm6]	T	A	6.345e^-6	0.301	INTRON jing
2R	12713591	2R_12713591_SNP [dm3] 2R_16826086_SNP [dm6]	C	T	6.533e^-6	0.301	SYNONYMOUS_CODING CG34459 UPSTREAM CG34460	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5339034	2R_5339034_SNP [dm3] 2R_9451529_SNP [dm6]	A	T	6.540e^-6	0.301	INTRON Camta
3R	18649686	3R_18649686_SNP [dm3] 3R_22823964_SNP [dm6]	C	G	6.648e^-6	0.301	EXON CR44350	TF binding site mE1_TFBS_inv
2L	6380408	2L_6380408_DEL [dm3] 2L_6380408_DEL [dm6]	CCTT	C	6.742e^-6	0.301	UPSTREAM CG9507 INTRON CG42368
3L	4840590	3L_4840590_SNP [dm3] 3L_4840590_SNP [dm6]	G	C	7.498e^-6	0.322	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	14416131	3R_14416131_SNP [dm3] 3R_18590409_SNP [dm6]	C	T	7.729e^-6	0.322	SYNONYMOUS_CODING CG7694 UPSTREAM qin DOWNSTREAM fray
3L	10562794	3L_10562794_SNP [dm3] 3L_10569694_SNP [dm6]	T	A	7.967e^-6	0.322	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	11083549	3R_11083549_DEL [dm3] 3R_15257827_DEL [dm6]	TT	T	8.043e^-6	0.322	DOWNSTREAM eIF-2gamma & 1 other INTERGENIC
2L	6380416	2L_6380416_SNP [dm3] 2L_6380416_SNP [dm6]	A	C	8.220e^-6	0.322	UPSTREAM CG9507 INTRON CG42368
3R	18650373	3R_18650373_SNP [dm3] 3R_22824651_SNP [dm6]	T	C	8.411e^-6	0.322	EXON CR44350	TF binding site mE1_TFBS_inv
X	4434810	X_4434810_SNP [dm3] X_4540777_SNP [dm6]	T	C	8.414e^-6	0.322	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	14416236	3R_14416236_SNP [dm3] 3R_18590514_SNP [dm6]	C	A	8.966e^-6	0.336	UPSTREAM qin INTRON CG7694
3L	4415899	3L_4415899_SNP [dm3] 3L_4415899_SNP [dm6]	G	A	9.524e^-6	0.35	INTRON DOR
3L	2683052	3L_2683052_SNP [dm3] 3L_2683052_SNP [dm6]	G	A	9.821e^-6	0.354	INTRON Fife
2R	12708964	2R_12708964_SNP [dm3] 2R_16821459_SNP [dm6]	T	A	1.046e^-5	0.369	INTERGENIC
X	4434808	X_4434808_SNP [dm3] X_4540775_SNP [dm6]	C	T	1.064e^-5	0.369	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	11486292	3L_11486292_SNP [dm3] 3L_11493192_SNP [dm6]	T	A	1.092e^-5	0.369	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16028663	3R_16028663_SNP [dm3] 3R_20202941_SNP [dm6]	C	T	1.102e^-5	0.369	INTERGENIC
2L	4757791	2L_4757791_DEL [dm3] 2L_4757791_DEL [dm6]	TTTCGCT	T	1.124e^-5	0.37	INTRON CG15630
2L	4788231	2L_4788231_SNP [dm3] 2L_4788231_SNP [dm6]	G	C	1.184e^-5	0.379	INTRON CG15630
3R	18644308	3R_18644308_SNP [dm3] 3R_22818586_SNP [dm6]	G	A	1.235e^-5	0.379	INTERGENIC
2L	12804680	2L_12804680_SNP [dm3] 2L_12804680_SNP [dm6]	T	G	1.239e^-5	0.379	INTERGENIC
3L	16744393	3L_16744393_SNP [dm3] 3L_16751293_SNP [dm6]	A	G	1.262e^-5	0.379	INTERGENIC
3L	11486466	3L_11486466_SNP [dm3] 3L_11493366_SNP [dm6]	A	T	1.273e^-5	0.379	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15777860	2L_15777860_SNP [dm3] 2L_15777860_SNP [dm6]	A	G	1.300e^-5	0.379	INTERGENIC	TF binding site mE1_TFBS_kn
2L	9831234	2L_9831234_SNP [dm3] 2L_9831234_SNP [dm6]	C	T	1.307e^-5	0.379	INTRON nAChRalpha6
2L	12721998	2L_12721998_SNP [dm3] 2L_12721998_SNP [dm6]	A	T	1.314e^-5	0.379	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	10562766	3L_10562766_SNP [dm3] 3L_10569666_SNP [dm6]	A	G	1.432e^-5	0.407	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	11486106	3L_11486106_SNP [dm3] 3L_11493006_SNP [dm6]	T	G	1.473e^-5	0.412	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13035259	3R_13035259_SNP [dm3] 3R_17209537_SNP [dm6]	A	G	1.493e^-5	0.412	INTERGENIC
2R	2075854	2R_2075854_SNP [dm3] 2R_6188349_SNP [dm6]	T	A	1.524e^-5	0.414	UTR_3_PRIME Ptr INTRON Ptr	TF binding site mE1_TFBS_inv
X	13411608	X_13411608_SNP [dm3] X_13517575_SNP [dm6]	T	A	1.556e^-5	0.416	INTRON Neto	TF binding site BDTNP1_TFBS_dl
X	4434811	X_4434811_SNP [dm3] X_4540778_SNP [dm6]	G	T	1.575e^-5	0.416	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	11484827	3L_11484827_DEL [dm3] 3L_11491727_DEL [dm6]	GG	G	1.650e^-5	0.43	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4434794	X_4434794_SNP [dm3] X_4540761_SNP [dm6]	C	A	1.675e^-5	0.43	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	12531590	X_12531590_SNP [dm3] X_12637557_SNP [dm6]	A	G	1.695e^-5	0.43	SYNONYMOUS_CODING Tomosyn	TF binding site BDTNP1_TFBS_dl
2L	3698438	2L_3698438_SNP [dm3] 2L_3698438_SNP [dm6]	C	A	1.719e^-5	0.43	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
2L	9514668	2L_9514668_SNP [dm3] 2L_9514668_SNP [dm6]	A	G	1.846e^-5	0.45	INTRON CG33298
3L	11861950	3L_11861950_SNP [dm3] 3L_11868850_SNP [dm6]	C	T	1.866e^-5	0.45	INTRON CG44837
3L	4840591	3L_4840591_DEL [dm3] 3L_4840591_DEL [dm6]	GG	G	1.870e^-5	0.45	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	4840608	3L_4840608_SNP [dm3] 3L_4840608_SNP [dm6]	C	A	1.967e^-5	0.467	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	20549199	2L_20549199_SNP [dm3] 2L_20549199_SNP [dm6]	A	G	2.090e^-5	0.49	INTERGENIC
2L	17550377	2L_17550377_SNP [dm3] 2L_17550377_SNP [dm6]	A	G	2.141e^-5	0.496	INTERGENIC
2L	13838508	2L_13838508_SNP [dm3] 2L_13838508_SNP [dm6]	T	G	2.279e^-5	0.521	DOWNSTREAM CG33307 INTRON CenG1A	TF binding site mE1_TFBS_HSA
3L	10562762	3L_10562762_SNP [dm3] 3L_10569662_SNP [dm6]	T	C	2.325e^-5	0.522	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	12795673	2L_12795673_SNP [dm3] 2L_12795673_SNP [dm6]	G	T	2.357e^-5	0.522	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1839314	2R_1839314_SNP [dm3] 2R_5951809_SNP [dm6]	A	T	2.393e^-5	0.522	INTERGENIC	transposable element FlyBase
2L	12771300	2L_12771300_SNP [dm3] 2L_12771300_SNP [dm6]	C	T	2.399e^-5	0.522	INTERGENIC
3L	13268744	3L_13268744_SNP [dm3] 3L_13275644_SNP [dm6]	C	G	2.424e^-5	0.522	UTR_5_PRIME caps	TF binding site mE1_TFBS_chinmo
X	18953837	X_18953837_DEL [dm3] X_19059804_DEL [dm6]	AAG	A	2.464e^-5	0.525	INTRON CG14190
2L	9514331	2L_9514331_SNP [dm3] 2L_9514331_SNP [dm6]	C	T	2.743e^-5	0.547	INTRON CG33298
3R	10300223	3R_10300223_SNP [dm3] 3R_14474501_SNP [dm6]	C	T	2.794e^-5	0.547	INTRON cv-c	TF binding site mE1_TFBS_cad
3R	23448644	3R_23448644_INS [dm3] 3R_27622922_INS [dm6]	T	TT	2.904e^-5	0.547	DOWNSTREAM CG5612 INTRON Tusp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1839313	2R_1839313_SNP [dm3] 2R_5951808_SNP [dm6]	T	A	2.936e^-5	0.547	INTERGENIC	transposable element FlyBase
2R	2860248	2R_2860248_SNP [dm3] 2R_6972743_SNP [dm6]	G	C	2.946e^-5	0.547	INTRON Cyp6u1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12798114	2L_12798114_SNP [dm3] 2L_12798114_SNP [dm6]	C	A	2.957e^-5	0.547	INTERGENIC
X	18953831	X_18953831_DEL [dm3] X_19059798_DEL [dm6]	AAGTG	C	2.957e^-5	0.547	INTRON CG14190
2R	18235721	2R_18235721_SNP [dm3] 2R_22348216_SNP [dm6]	G	T	2.976e^-5	0.547	UPSTREAM CG11298 INTRON Liprin-gamma
2L	12721737	2L_12721737_SNP [dm3] 2L_12721737_SNP [dm6]	C	T	2.982e^-5	0.547	UTR_5_PRIME CG5792 UPSTREAM MRP INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	13411553	X_13411553_SNP [dm3] X_13517520_SNP [dm6]	G	T	2.985e^-5	0.547	INTRON Neto	TF binding site BDTNP1_TFBS_dl
X	13411607	X_13411607_SNP [dm3] X_13517574_SNP [dm6]	T	C	3.023e^-5	0.547	INTRON Neto	TF binding site BDTNP1_TFBS_dl
2R	14015181	2R_14015181_SNP [dm3] 2R_18127676_SNP [dm6]	T	C	3.033e^-5	0.547	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	12800064	2L_12800064_SNP [dm3] 2L_12800064_SNP [dm6]	A	G	3.050e^-5	0.547	INTERGENIC
2R	18539053	2R_18539053_SNP [dm3] 2R_22651548_SNP [dm6]	C	T	3.056e^-5	0.547	SYNONYMOUS_CODING nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12722038	2L_12722038_SNP [dm3] 2L_12722038_SNP [dm6]	A	T	3.063e^-5	0.547	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	9166500	2R_9166500_INS [dm3] 2R_13278995_INS [dm6]	A	AA	3.089e^-5	0.547	INTRON Dh31-R
3R	16282181	3R_16282181_SNP [dm3] 3R_20456459_SNP [dm6]	T	C	3.106e^-5	0.547	INTRON Gfrl
3L	12195536	3L_12195536_SNP [dm3] 3L_12202436_SNP [dm6]	C	G	3.151e^-5	0.547	INTRON Adk1
2R	18373292	2R_18373292_SNP [dm3] 2R_22485787_SNP [dm6]	G	A	3.166e^-5	0.547	SYNONYMOUS_CODING CG4554
X	10436856	X_10436856_SNP [dm3] X_10542823_SNP [dm6]	G	T	3.173e^-5	0.547	INTRON spri
2R	15571285	2R_15571285_SNP [dm3] 2R_19683780_SNP [dm6]	A	G	3.179e^-5	0.547	UPSTREAM CG34198 EXON CR44505
3R	15453734	3R_15453734_SNP [dm3] 3R_19628012_SNP [dm6]	T	C	3.416e^-5	0.565	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
3L	4840543	3L_4840543_SNP [dm3] 3L_4840543_SNP [dm6]	A	T	3.502e^-5	0.565	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	15400711	2R_15400711_SNP [dm3] 2R_19513206_SNP [dm6]	T	C	3.520e^-5	0.565	SYNONYMOUS_CODING Ir56d
2L	6566390	2L_6566390_SNP [dm3] 2L_6566390_SNP [dm6]	T	A	3.523e^-5	0.565	UPSTREAM CG13766 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12800142	2L_12800142_DEL [dm3] 2L_12800142_DEL [dm6]	GC	G	3.549e^-5	0.565	INTERGENIC
2L	12771287	2L_12771287_SNP [dm3] 2L_12771287_SNP [dm6]	T	A	3.588e^-5	0.565	INTERGENIC
3R	843775	3R_843775_SNP [dm3] 3R_5018053_SNP [dm6]	C	T	3.618e^-5	0.565	INTRON CR45585	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17428170	2R_17428170_SNP [dm3] 2R_21540665_SNP [dm6]	A	G	3.620e^-5	0.565	UPSTREAM CG30283 INTRON Egfr
3L	18092024	3L_18092024_SNP [dm3] 3L_18098924_SNP [dm6]	A	T	3.629e^-5	0.565	INTRON CG13698
3R	14110152	3R_14110152_SNP [dm3] 3R_18284430_SNP [dm6]	A	T	3.635e^-5	0.565	SYNONYMOUS_CODING CG8064 UPSTREAM CG14312	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2046945	2R_2046945_SNP [dm3] 2R_6159440_SNP [dm6]	C	A	3.664e^-5	0.565	INTRON EcR EXON CR43904	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13642841	3R_13642841_SNP [dm3] 3R_17817119_SNP [dm6]	A	T	3.671e^-5	0.565	INTRON tinc	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16092795	X_16092795_SNP [dm3] X_16198762_SNP [dm6]	C	G	3.686e^-5	0.565	INTERGENIC
3R	25139110	3R_25139110_SNP [dm3] 3R_29313388_SNP [dm6]	A	T	3.707e^-5	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	930913	2L_930913_SNP [dm3] 2L_930913_SNP [dm6]	A	C	3.740e^-5	0.566	INTRON CG4341
2R	10814069	2R_10814069_SNP [dm3] 2R_14926564_SNP [dm6]	T	C	3.802e^-5	0.57	UTR_5_PRIME CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12225244	3L_12225244_SNP [dm3] 3L_12232144_SNP [dm6]	C	G	3.870e^-5	0.576	INTRON app
3R	26210117	3R_26210117_SNP [dm3] 3R_30384395_SNP [dm6]	G	T	3.902e^-5	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
2L	12722116	2L_12722116_SNP [dm3] 2L_12722116_SNP [dm6]	A	T	3.954e^-5	0.579	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	12225127	3L_12225127_SNP [dm3] 3L_12232027_SNP [dm6]	G	A	4.007e^-5	0.583	INTRON app
2R	18372718	2R_18372718_SNP [dm3] 2R_22485213_SNP [dm6]	A	G	4.104e^-5	0.591	NON_SYNONYMOUS_CODING CG4554
3R	2792620	3R_2792620_SNP [dm3] 3R_6966898_SNP [dm6]	T	G	4.128e^-5	0.591	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9249757	3L_9249757_SNP [dm3] 3L_9256657_SNP [dm6]	G	A	4.156e^-5	0.591	INTRON GluRIB
3R	24747699	3R_24747699_SNP [dm3] 3R_28921977_SNP [dm6]	C	T	4.200e^-5	0.592	UTR_3_PRIME Doa DOWNSTREAM Doa	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18372857	2R_18372857_SNP [dm3] 2R_22485352_SNP [dm6]	C	A	4.320e^-5	0.602	SYNONYMOUS_CODING CG4554
3R	23562687	3R_23562687_SNP [dm3] 3R_27736965_SNP [dm6]	C	T	4.336e^-5	0.602	START_GAINED Ets98B UTR_5_PRIME Ets98B	TF binding site BDTNP1_TFBS_dl
2L	12804498	2L_12804498_DEL [dm3] 2L_12804498_DEL [dm6]	TT	T	4.483e^-5	0.618	INTERGENIC
3L	12864506	3L_12864506_SNP [dm3] 3L_12871406_SNP [dm6]	A	T	4.553e^-5	0.619	INTERGENIC
3R	18658671	3R_18658671_SNP [dm3] 3R_22832949_SNP [dm6]	C	A	4.556e^-5	0.619	INTERGENIC
3R	16282187	3R_16282187_SNP [dm3] 3R_20456465_SNP [dm6]	T	C	4.656e^-5	0.627	INTRON Gfrl
X	8606163	X_8606163_SNP [dm3] X_8712130_SNP [dm6]	A	C	4.680e^-5	0.627	DOWNSTREAM CG2004 INTRON Hexo2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17621665	2R_17621665_SNP [dm3] 2R_21734160_SNP [dm6]	T	A	4.820e^-5	0.634	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4155272	3L_4155272_SNP [dm3] 3L_4155272_SNP [dm6]	C	T	4.843e^-5	0.634	SYNONYMOUS_CODING nab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	7940369	2L_7940369_SNP [dm3] 2L_7940369_SNP [dm6]	C	T	4.855e^-5	0.634	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
2R	17553232	2R_17553232_SNP [dm3] 2R_21665727_SNP [dm6]	G	A	4.953e^-5	0.634	UTR_3_PRIME CG42362 & 1 other UPSTREAM CG42364 & 1 other
2L	2972381	2L_2972381_SNP [dm3] 2L_2972381_SNP [dm6]	T	C	5.040e^-5	0.634	UTR_5_PRIME Rrp1 UPSTREAM gammaTub23C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
X	16955904	X_16955904_SNP [dm3] X_17061871_SNP [dm6]	A	C	5.052e^-5	0.634	INTRON CG45002
3L	2682962	3L_2682962_SNP [dm3] 3L_2682962_SNP [dm6]	C	T	5.068e^-5	0.634	INTRON Fife
2L	12802211	2L_12802211_SNP [dm3] 2L_12802211_SNP [dm6]	A	T	5.073e^-5	0.634	INTERGENIC
2R	18373370	2R_18373370_SNP [dm3] 2R_22485865_SNP [dm6]	G	A	5.109e^-5	0.634	SYNONYMOUS_CODING CG4554
2L	3744312	2L_3744312_SNP [dm3] 2L_3744312_SNP [dm6]	G	A	5.120e^-5	0.634	INTRON CG10019
2R	16109071	2R_16109071_SNP [dm3] 2R_20221566_SNP [dm6]	A	T	5.142e^-5	0.634	EXON CR45423
2R	18372697	2R_18372697_SNP [dm3] 2R_22485192_SNP [dm6]	A	G	5.157e^-5	0.634	NON_SYNONYMOUS_CODING CG4554
2R	9160125	2R_9160125_SNP [dm3] 2R_13272620_SNP [dm6]	A	G	5.184e^-5	0.634	INTRON Dh31-R
X	3141044	X_3141044_SNP [dm3] X_3247011_SNP [dm6]	A	C	5.213e^-5	0.634	INTRON dnc
2R	3504566	2R_3504566_SNP [dm3] 2R_7617061_SNP [dm6]	T	A	5.243e^-5	0.634	INTRON CG1358
X	4436667	X_4436667_SNP [dm3] X_4542634_SNP [dm6]	G	T	5.350e^-5	0.634	UTR_5_PRIME CG3568 DOWNSTREAM CHOp24 INTRON CR32773
X	2454366	X_2454366_SNP [dm3] X_2560333_SNP [dm6]	T	A	5.369e^-5	0.634	INTRON Pdfr
X	16409632	X_16409632_SNP [dm3] X_16515599_SNP [dm6]	G	A	5.397e^-5	0.634	INTRON para
3R	18535684	3R_18535684_SNP [dm3] 3R_22709962_SNP [dm6]	T	C	5.417e^-5	0.634	NON_SYNONYMOUS_CODING CG4907 SPLICE_SITE_REGION CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi
2R	15540432	2R_15540432_SNP [dm3] 2R_19652927_SNP [dm6]	C	T	5.419e^-5	0.634	UPSTREAM CR44213 DOWNSTREAM Ir56e EXON CR44212
2R	7127560	2R_7127560_SNP [dm3] 2R_11240055_SNP [dm6]	G	T	5.541e^-5	0.634	UTR_5_PRIME CG13215	TF binding site mE1_TFBS_sens
2R	14015180	2R_14015180_SNP [dm3] 2R_18127675_SNP [dm6]	C	G	5.647e^-5	0.634	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11312771	3L_11312771_SNP [dm3] 3L_11319671_SNP [dm6]	T	A	5.663e^-5	0.634	UTR_3_PRIME CG6168 DOWNSTREAM CG6168
2L	12798915	2L_12798915_SNP [dm3] 2L_12798915_SNP [dm6]	A	G	5.678e^-5	0.634	INTERGENIC
2L	12899501	2L_12899501_SNP [dm3] 2L_12899501_SNP [dm6]	C	T	5.690e^-5	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20549403	2L_20549403_SNP [dm3] 2L_20549403_SNP [dm6]	C	T	5.695e^-5	0.634	INTERGENIC
2L	20549405	2L_20549405_SNP [dm3] 2L_20549405_SNP [dm6]	C	G	5.695e^-5	0.634	INTERGENIC
2R	18232995	2R_18232995_SNP [dm3] 2R_22345490_SNP [dm6]	A	G	5.729e^-5	0.634	INTRON Liprin-gamma
X	15679131	X_15679131_SNP [dm3] X_15785098_SNP [dm6]	T	A	5.732e^-5	0.634	UTR_5_PRIME Paf-AHalpha UPSTREAM mRpS30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	13353551	2L_13353551_SNP [dm3] 2L_13353551_SNP [dm6]	A	T	5.796e^-5	0.634	INTRON CG9395
2R	9519920	2R_9519920_SNP [dm3] 2R_13632415_SNP [dm6]	G	T	5.805e^-5	0.634	INTRON fas
2L	12722141	2L_12722141_SNP [dm3] 2L_12722141_SNP [dm6]	C	T	5.816e^-5	0.634	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	20892358	3R_20892358_SNP [dm3] 3R_25066636_SNP [dm6]	C	T	6.066e^-5	0.648	UTR_3_PRIME PQBP1 DOWNSTREAM OstStt3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18092025	3L_18092025_SNP [dm3] 3L_18098925_SNP [dm6]	T	C	6.066e^-5	0.648	INTRON CG13698
3L	4840580	3L_4840580_SNP [dm3] 3L_4840580_SNP [dm6]	C	G	6.077e^-5	0.648	UPSTREAM CG13707 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	16441698	2R_16441698_SNP [dm3] 2R_20554193_SNP [dm6]	G	A	6.089e^-5	0.648	INTERGENIC
2L	7632048	2L_7632048_DEL [dm3] 2L_7632048_DEL [dm6]	AA	A	6.148e^-5	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	16987913	X_16987913_SNP [dm3] X_17093880_SNP [dm6]	C	T	6.153e^-5	0.648	INTRON CG16700 & 1 other
2L	15207315	2L_15207315_SNP [dm3] 2L_15207315_SNP [dm6]	C	G	6.272e^-5	0.657	UPSTREAM CR44196 INTERGENIC
3R	26868913	3R_26868913_SNP [dm3] 3R_31043191_SNP [dm6]	A	G	6.397e^-5	0.662	SYNONYMOUS_CODING CanA1
2R	12298638	2R_12298638_SNP [dm3] 2R_16411133_SNP [dm6]	A	G	6.402e^-5	0.662	INTRON Sema-2b
2L	6227765	2L_6227765_DEL [dm3] 2L_6227765_DEL [dm6]	AGATACAATGTTGCAGTTTG...	A	6.489e^-5	0.662	DOWNSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	19952863	3L_19952863_SNP [dm3] 3L_19959763_SNP [dm6]	C	T	6.518e^-5	0.662	INTRON Ac76E
3L	10562800	3L_10562800_SNP [dm3] 3L_10569700_SNP [dm6]	T	C	6.524e^-5	0.662	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	3743766	2L_3743766_SNP [dm3] 2L_3743766_SNP [dm6]	A	C	6.556e^-5	0.662	INTRON CG10019
3R	16282190	3R_16282190_SNP [dm3] 3R_20456468_SNP [dm6]	T	A	6.566e^-5	0.662	INTRON Gfrl
2R	5235581	2R_5235581_SNP [dm3] 2R_9348076_SNP [dm6]	T	C	6.737e^-5	0.674	UTR_3_PRIME Or45a INTRON CG13954 & 1 other
2L	12900449	2L_12900449_SNP [dm3] 2L_12900449_SNP [dm6]	T	A	6.772e^-5	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11477865	3L_11477865_SNP [dm3] 3L_11484765_SNP [dm6]	T	C	6.792e^-5	0.674	INTERGENIC
X	18953805	X_18953805_SNP [dm3] X_19059772_SNP [dm6]	G	A	6.875e^-5	0.677	INTRON CG14190
3L	6130271	3L_6130271_SNP [dm3] 3L_6137171_SNP [dm6]	A	T	6.940e^-5	0.677	UPSTREAM Lcp65Af DOWNSTREAM Lcp65Ae INTERGENIC
2L	12721732	2L_12721732_SNP [dm3] 2L_12721732_SNP [dm6]	G	A	6.960e^-5	0.677	START_GAINED CG5792 UTR_5_PRIME CG5792 UPSTREAM MRP INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	5404623	2L_5404623_SNP [dm3] 2L_5404623_SNP [dm6]	A	C	7.021e^-5	0.677	UTR_5_PRIME H15 UPSTREAM H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	15390178	2L_15390178_SNP [dm3] 2L_15390178_SNP [dm6]	G	A	7.062e^-5	0.677	INTERGENIC
3R	16282155	3R_16282155_INS [dm3] 3R_20456433_INS [dm6]	A	AAA	7.074e^-5	0.677	INTRON Gfrl
2L	20549374	2L_20549374_SNP [dm3] 2L_20549374_SNP [dm6]	G	C	7.078e^-5	0.677	INTERGENIC
3R	22543916	3R_22543916_SNP [dm3] 3R_26718194_SNP [dm6]	T	C	7.289e^-5	0.686	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9502531	2L_9502531_SNP [dm3] 2L_9502531_SNP [dm6]	T	A	7.387e^-5	0.686	INTRON CG33298
2R	17190424	2R_17190424_SNP [dm3] 2R_21302919_SNP [dm6]	G	A	7.422e^-5	0.686	INTRON CG42672
2R	4527144	2R_4527144_SNP [dm3] 2R_8639639_SNP [dm6]	T	A	7.458e^-5	0.686	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
2L	7707053	2L_7707053_DEL [dm3] 2L_7707053_DEL [dm6]	TTAT	G	7.468e^-5	0.686	INTRON Tep3	TF binding site mE1_TFBS_inv
X	5003599	X_5003599_SNP [dm3] X_5109566_SNP [dm6]	G	A	7.528e^-5	0.686	INTRON rg & 1 other
X	20575395	X_20575395_SNP [dm3] X_20704368_SNP [dm6]	A	G	7.534e^-5	0.686	INTERGENIC	regulatory region REDfly_CRMs
2R	15540421	2R_15540421_SNP [dm3] 2R_19652916_SNP [dm6]	T	A	7.540e^-5	0.686	UPSTREAM CR44213 DOWNSTREAM Ir56e EXON CR44212
2L	7707066	2L_7707066_INS [dm3] 2L_7707066_INS [dm6]	T	TG	7.576e^-5	0.686	INTRON Tep3	TF binding site mE1_TFBS_inv
2L	12798898	2L_12798898_SNP [dm3] 2L_12798898_SNP [dm6]	C	T	7.578e^-5	0.686	INTERGENIC
2L	12798899	2L_12798899_SNP [dm3] 2L_12798899_SNP [dm6]	G	A	7.590e^-5	0.686	INTERGENIC
3L	12094681	3L_12094681_SNP [dm3] 3L_12101581_SNP [dm6]	G	A	7.691e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	17692864	3R_17692864_SNP [dm3] 3R_21867142_SNP [dm6]	T	C	7.706e^-5	0.686	SYNONYMOUS_CODING CG6569 UTR_3_PRIME CG6569 UPSTREAM Cby DOWNSTREAM lsn
2L	1147627	2L_1147627_SNP [dm3] 2L_1147627_SNP [dm6]	G	A	7.735e^-5	0.686	UPSTREAM CG4749 DOWNSTREAM MFS3 INTERGENIC
2L	12721903	2L_12721903_SNP [dm3] 2L_12721903_SNP [dm6]	G	C	7.740e^-5	0.686	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	21775757	3L_21775757_SNP [dm3] 3L_21782657_SNP [dm6]	G	A	7.783e^-5	0.686	INTERGENIC
X	20751713	X_20751713_SNP [dm3] X_20880686_SNP [dm6]	A	T	7.821e^-5	0.686	INTRON shakB
X	2462286	X_2462286_SNP [dm3] X_2568253_SNP [dm6]	T	C	7.882e^-5	0.686	INTRON Pdfr
2L	18980135	2L_18980135_SNP [dm3] 2L_18980135_SNP [dm6]	C	T	7.903e^-5	0.686	INTRON Swip-1
X	13809512	X_13809512_DEL [dm3] X_13915479_DEL [dm6]	ATGTTATAAACAAACATTCT...	TA	7.955e^-5	0.686	INTRON mamo
2R	19632336	2R_19632336_SNP [dm3] 2R_23744813_SNP [dm6]	C	T	7.967e^-5	0.686	INTRON egl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3R	22542460	3R_22542460_SNP [dm3] 3R_26716738_SNP [dm6]	A	G	7.972e^-5	0.686	SYNONYMOUS_CODING CG6425	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12722004	2L_12722004_SNP [dm3] 2L_12722004_SNP [dm6]	A	C	8.049e^-5	0.689	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	5051268	X_5051268_SNP [dm3] X_5157235_SNP [dm6]	A	T	8.158e^-5	0.692	INTRON rg & 1 other
3L	4957303	3L_4957303_DEL [dm3] 3L_4957303_DEL [dm6]	ATTTCAGTTCA...	A	8.170e^-5	0.692	INTRON Con
2R	12146503	2R_12146503_SNP [dm3] 2R_16258998_SNP [dm6]	A	C	8.211e^-5	0.692	INTRON CngA
X	20324600	X_20324600_SNP [dm3] X_20453573_SNP [dm6]	T	G	8.281e^-5	0.692	INTRON CG32506
2L	18980142	2L_18980142_SNP [dm3] 2L_18980142_SNP [dm6]	G	A	8.281e^-5	0.692	INTRON Swip-1
2L	20549104	2L_20549104_SNP [dm3] 2L_20549104_SNP [dm6]	G	A	8.309e^-5	0.692	INTERGENIC
2L	20648821	2L_20648821_SNP [dm3] 2L_20648821_SNP [dm6]	A	G	8.344e^-5	0.692	UPSTREAM CG18810 DOWNSTREAM snoRNA:Me28S-C2645a & 2 others EXON Uhg3
3L	13269262	3L_13269262_SNP [dm3] 3L_13276162_SNP [dm6]	A	G	8.400e^-5	0.694	SYNONYMOUS_CODING caps	TF binding site mE1_TFBS_chinmo
2R	15910358	2R_15910358_SNP [dm3] 2R_20022853_SNP [dm6]	C	A	8.450e^-5	0.695	INTERGENIC
3R	15633800	3R_15633800_SNP [dm3] 3R_19808078_SNP [dm6]	C	T	8.607e^-5	0.705	INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12798111	2L_12798111_SNP [dm3] 2L_12798111_SNP [dm6]	C	T	8.672e^-5	0.705	INTERGENIC
3R	18360161	3R_18360161_SNP [dm3] 3R_22534439_SNP [dm6]	A	C	8.678e^-5	0.705	INTRON CG5326
X	8713433	X_8713433_SNP [dm3] X_8819400_SNP [dm6]	T	A	8.952e^-5	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11612145	2L_11612145_SNP [dm3] 2L_11612145_SNP [dm6]	A	C	8.985e^-5	0.713	UPSTREAM spag4 INTRON kek2
3L	17044151	3L_17044151_SNP [dm3] 3L_17051051_SNP [dm6]	G	T	9.127e^-5	0.713	UPSTREAM rogdi INTRON rogdi	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	11486312	3L_11486312_SNP [dm3] 3L_11493212_SNP [dm6]	T	A	9.172e^-5	0.713	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17405555	2L_17405555_SNP [dm3] 2L_17405555_SNP [dm6]	C	T	9.193e^-5	0.713	SYNONYMOUS_CODING CLIP-190 DOWNSTREAM CLIP-190
2L	12798115	2L_12798115_SNP [dm3] 2L_12798115_SNP [dm6]	C	G	9.205e^-5	0.713	INTERGENIC
2L	12898062	2L_12898062_SNP [dm3] 2L_12898062_SNP [dm6]	A	T	9.245e^-5	0.713	INTERGENIC
2L	3698424	2L_3698424_SNP [dm3] 2L_3698424_SNP [dm6]	T	G	9.348e^-5	0.713	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
2R	9520011	2R_9520011_SNP [dm3] 2R_13632506_SNP [dm6]	G	T	9.428e^-5	0.713	INTRON fas
2L	7643166	2L_7643166_SNP [dm3] 2L_7643166_SNP [dm6]	G	T	9.438e^-5	0.713	UTR_3_PRIME Slob DOWNSTREAM Slob
2R	14832295	2R_14832295_SNP [dm3] 2R_18944790_SNP [dm6]	A	G	9.587e^-5	0.713	INTRON sano
2L	9714900	2L_9714900_SNP [dm3] 2L_9714900_SNP [dm6]	G	A	9.646e^-5	0.713	UTR_3_PRIME Nckx30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14163465	3R_14163465_SNP [dm3] 3R_18337743_SNP [dm6]	G	A	9.650e^-5	0.713	INTRON CG15803
2R	19600120	2R_19600120_SNP [dm3] 2R_23712597_SNP [dm6]	T	C	9.679e^-5	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8502718	X_8502718_SNP [dm3] X_8608685_SNP [dm6]	A	C	9.683e^-5	0.713	INTERGENIC
2R	16824113	2R_16824113_SNP [dm3] 2R_20936608_SNP [dm6]	G	A	9.707e^-5	0.713	NON_SYNONYMOUS_CODING Rx
2L	12798890	2L_12798890_SNP [dm3] 2L_12798890_SNP [dm6]	A	T	9.746e^-5	0.713	INTERGENIC
2L	18531201	2L_18531201_SNP [dm3] 2L_18531201_SNP [dm6]	A	G	9.784e^-5	0.713	SPLICE_SITE_REGION CG10211 DOWNSTREAM Pde11 INTRON CG10211
3R	26870329	3R_26870329_SNP [dm3] 3R_31044607_SNP [dm6]	G	A	9.836e^-5	0.713	SYNONYMOUS_CODING CG33920 INTRON CanA1
3R	18684480	3R_18684480_SNP [dm3] 3R_22858758_SNP [dm6]	T	C	9.847e^-5	0.713	INTERGENIC
2R	12259291	2R_12259291_SNP [dm3] 2R_16371786_SNP [dm6]	A	G	9.856e^-5	0.713	INTERGENIC
3L	1845718	3L_1845718_DEL [dm3] 3L_1845718_DEL [dm6]	CAGCCGTCC	C	9.899e^-5	0.713	INTERGENIC
2R	2059000	2R_2059000_SNP [dm3] 2R_6171495_SNP [dm6]	C	T	9.912e^-5	0.713	UPSTREAM tRNA:CR30316 DOWNSTREAM tRNA:K2:42Ad INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16164620	X_16164620_SNP [dm3] X_16270587_SNP [dm6]	T	A	9.922e^-5	0.713	SPLICE_SITE_REGION kat80 UPSTREAM Mfe2 INTRON kat80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17511209	2R_17511209_SNP [dm3] 2R_21623704_SNP [dm6]	G	A	9.943e^-5	0.713	SYNONYMOUS_CODING PTP-ER	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18653612	3R_18653612_SNP [dm3] 3R_22827890_SNP [dm6]	T	C	9.967e^-5	0.713	UPSTREAM CR44350 INTERGENIC
3L	12194239	3L_12194239_SNP [dm3] 3L_12201139_SNP [dm6]	A	G	1.001e^-4	0.713	INTRON Adk1
3L	11487359	3L_11487359_SNP [dm3] 3L_11494259_SNP [dm6]	C	A	1.014e^-4	0.713	SYNONYMOUS_CODING chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5425765	2L_5425765_SNP [dm3] 2L_5425765_SNP [dm6]	G	A	1.015e^-4	0.713	INTERGENIC
3R	23208671	3R_23208671_SNP [dm3] 3R_27382949_SNP [dm6]	C	A	1.017e^-4	0.713	INTRON side
2L	6380378	2L_6380378_SNP [dm3] 2L_6380378_SNP [dm6]	C	G	1.020e^-4	0.713	UPSTREAM CG9507 INTRON CG42368
X	4676388	X_4676388_SNP [dm3] X_4782355_SNP [dm6]	A	G	1.021e^-4	0.713	NON_SYNONYMOUS_CODING CG15471
X	14118023	X_14118023_SNP [dm3] X_14223990_SNP [dm6]	G	A	1.022e^-4	0.713	DOWNSTREAM CG11674 INTRON l_1_G0007	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2042594	2R_2042594_SNP [dm3] 2R_6155089_SNP [dm6]	G	T	1.027e^-4	0.713	INTRON EcR
2L	14447129	2L_14447129_SNP [dm3] 2L_14447129_SNP [dm6]	A	T	1.029e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6565986	2L_6565986_SNP [dm3] 2L_6565986_SNP [dm6]	C	G	1.029e^-4	0.713	SYNONYMOUS_CODING CG13766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22543937	3R_22543937_SNP [dm3] 3R_26718215_SNP [dm6]	G	C	1.034e^-4	0.713	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10561088	3L_10561088_SNP [dm3] 3L_10567988_SNP [dm6]	T	C	1.037e^-4	0.713	INTRON A2bp1
2L	6227687	2L_6227687_SNP [dm3] 2L_6227687_SNP [dm6]	C	A	1.039e^-4	0.713	DOWNSTREAM Ugt37b1 INTERGENIC
3R	18650384	3R_18650384_SNP [dm3] 3R_22824662_SNP [dm6]	T	C	1.041e^-4	0.713	EXON CR44350	TF binding site mE1_TFBS_inv
2R	8777046	2R_8777046_SNP [dm3] 2R_12889541_SNP [dm6]	C	T	1.042e^-4	0.713	INTRON vg	regulatory region FlyBase TF binding site mE1_TFBS_sens
3L	11479453	3L_11479453_SNP [dm3] 3L_11486353_SNP [dm6]	T	G	1.042e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	18730490	X_18730490_SNP [dm3] X_18836457_SNP [dm6]	C	T	1.043e^-4	0.713	INTRON Pvf1
2R	16823495	2R_16823495_SNP [dm3] 2R_20935990_SNP [dm6]	A	C	1.052e^-4	0.713	INTRON Rx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16429266	X_16429266_INS [dm3] X_16535233_INS [dm6]	C	CACT	1.074e^-4	0.713	INTERGENIC
2R	15392509	2R_15392509_SNP [dm3] 2R_19505004_SNP [dm6]	C	A	1.076e^-4	0.713	UPSTREAM CR44472 DOWNSTREAM CG11007 EXON CR44472	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12721963	2L_12721963_SNP [dm3] 2L_12721963_SNP [dm6]	A	T	1.081e^-4	0.713	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	18360157	3R_18360157_SNP [dm3] 3R_22534435_SNP [dm6]	C	T	1.088e^-4	0.713	INTRON CG5326
3L	18483086	3L_18483086_SNP [dm3] 3L_18489986_SNP [dm6]	A	G	1.091e^-4	0.713	INTRON AstC-R2
3R	18084312	3R_18084312_SNP [dm3] 3R_22258590_SNP [dm6]	A	T	1.093e^-4	0.713	INTRON SKIP
2L	17542421	2L_17542421_SNP [dm3] 2L_17542421_SNP [dm6]	T	A	1.094e^-4	0.713	DOWNSTREAM CR43304 INTERGENIC
3R	16282172	3R_16282172_SNP [dm3] 3R_20456450_SNP [dm6]	A	G	1.097e^-4	0.713	INTRON Gfrl
2L	6399030	2L_6399030_SNP [dm3] 2L_6399030_SNP [dm6]	T	A	1.101e^-4	0.713	INTRON CG42368
3L	1008435	3L_1008435_SNP [dm3] 3L_1008435_SNP [dm6]	T	A	1.102e^-4	0.713	UPSTREAM trio INTRON trio
3L	19839577	3L_19839577_SNP [dm3] 3L_19846477_SNP [dm6]	C	G	1.111e^-4	0.713	UPSTREAM Papss INTRON Papss	TF binding site mE1_TFBS_inv
3R	4924721	3R_4924721_SNP [dm3] 3R_9098999_SNP [dm6]	T	A	1.111e^-4	0.713	INTRON pum
3L	7256324	3L_7256324_SNP [dm3] 3L_7263224_SNP [dm6]	C	T	1.119e^-4	0.713	INTRON CG14830
2R	16062668	2R_16062668_SNP [dm3] 2R_20175163_SNP [dm6]	T	A	1.123e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6398993	2L_6398993_SNP [dm3] 2L_6398993_SNP [dm6]	T	C	1.130e^-4	0.713	INTRON CG42368
2L	20029874	2L_20029874_SNP [dm3] 2L_20029874_SNP [dm6]	C	A	1.146e^-4	0.713	INTRON sNPF
X	18367527	X_18367527_SNP [dm3] X_18473494_SNP [dm6]	G	C	1.150e^-4	0.713	INTRON CG32547
2L	12898212	2L_12898212_SNP [dm3] 2L_12898212_SNP [dm6]	A	T	1.150e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_cad
2L	21377859	2L_21377859_SNP [dm3] 2L_21377859_SNP [dm6]	C	T	1.150e^-4	0.713	UTR_3_PRIME CG8665	transposable element FlyBase
2R	7295641	2R_7295641_SNP [dm3] 2R_11408136_SNP [dm6]	A	T	1.152e^-4	0.713	DOWNSTREAM CG30026 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3L	18565983	3L_18565983_SNP [dm3] 3L_18572883_SNP [dm6]	A	T	1.155e^-4	0.713	INTRON AstC-R1
3R	25315428	3R_25315428_SNP [dm3] 3R_29489706_SNP [dm6]	T	G	1.165e^-4	0.713	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7295645	2R_7295645_SNP [dm3] 2R_11408140_SNP [dm6]	C	T	1.166e^-4	0.713	DOWNSTREAM CG30026 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
X	16164514	X_16164514_SNP [dm3] X_16270481_SNP [dm6]	A	G	1.175e^-4	0.713	SYNONYMOUS_CODING kat80 UPSTREAM Mfe2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13353432	2L_13353432_SNP [dm3] 2L_13353432_SNP [dm6]	T	A	1.175e^-4	0.713	INTRON CG9395
2L	20466042	2L_20466042_SNP [dm3] 2L_20466042_SNP [dm6]	T	C	1.177e^-4	0.713	INTRON CR44980
2L	6399034	2L_6399034_SNP [dm3] 2L_6399034_SNP [dm6]	G	T	1.179e^-4	0.713	INTRON CG42368
3L	11050456	3L_11050456_SNP [dm3] 3L_11057356_SNP [dm6]	A	G	1.180e^-4	0.713	INTRON CG7888
2R	7037876	2R_7037876_SNP [dm3] 2R_11150371_SNP [dm6]	T	C	1.181e^-4	0.713	UPSTREAM CG12391 INTRON CG13229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7392892	2L_7392892_SNP [dm3] 2L_7392892_SNP [dm6]	T	A	1.182e^-4	0.713	INTRON CG5160
2R	7267521	2R_7267521_SNP [dm3] 2R_11380016_SNP [dm6]	C	T	1.184e^-4	0.713	UPSTREAM Tsp47F DOWNSTREAM Sod3 INTERGENIC
2L	7643185	2L_7643185_SNP [dm3] 2L_7643185_SNP [dm6]	A	G	1.185e^-4	0.713	UTR_3_PRIME Slob DOWNSTREAM Slob
2L	6380438	2L_6380438_SNP [dm3] 2L_6380438_SNP [dm6]	G	A	1.188e^-4	0.713	UPSTREAM CG9507 INTRON CG42368
2L	1269667	2L_1269667_SNP [dm3] 2L_1269667_SNP [dm6]	G	T	1.200e^-4	0.713	INTRON robo3
X	603284	X_603284_SNP [dm3] X_709251_SNP [dm6]	A	T	1.201e^-4	0.713	INTRON sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20782287	3R_20782287_SNP [dm3] 3R_24956565_SNP [dm6]	A	G	1.206e^-4	0.713	INTERGENIC
2L	12893667	2L_12893667_INS [dm3] 2L_12893667_INS [dm6]	G	AA	1.208e^-4	0.713	INTERGENIC
2R	13540794	2R_13540794_SNP [dm3] 2R_17653289_SNP [dm6]	G	A	1.212e^-4	0.713	INTRON CCHa1-R
X	13101211	X_13101211_INS [dm3] X_13207178_INS [dm6]	A	AAATAT	1.222e^-4	0.713	INTRON sno
3L	14582465	3L_14582465_SNP [dm3] 3L_14589365_SNP [dm6]	C	A	1.223e^-4	0.713	INTRON HGTX
3L	14582466	3L_14582466_SNP [dm3] 3L_14589366_SNP [dm6]	C	A	1.223e^-4	0.713	INTRON HGTX
2R	1944402	2R_1944402_SNP [dm3] 2R_6056897_SNP [dm6]	T	C	1.230e^-4	0.713	DOWNSTREAM CG7856 INTRON CCHa2-R
2L	12722186	2L_12722186_SNP [dm3] 2L_12722186_SNP [dm6]	T	A	1.236e^-4	0.713	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	12765129	2L_12765129_SNP [dm3] 2L_12765129_SNP [dm6]	A	G	1.246e^-4	0.713	INTERGENIC
2L	5685168	2L_5685168_SNP [dm3] 2L_5685168_SNP [dm6]	T	G	1.248e^-4	0.713	INTERGENIC
X	12093465	X_12093465_SNP [dm3] X_12199432_SNP [dm6]	G	T	1.251e^-4	0.713	INTRON Ten-a
X	18730164	X_18730164_SNP [dm3] X_18836131_SNP [dm6]	A	T	1.254e^-4	0.713	INTRON Pvf1
X	18987648	X_18987648_SNP [dm3] X_19093615_SNP [dm6]	C	A	1.267e^-4	0.713	INTERGENIC
2R	12146480	2R_12146480_SNP [dm3] 2R_16258975_SNP [dm6]	C	T	1.275e^-4	0.713	INTRON CngA
2L	18540430	2L_18540430_SNP [dm3] 2L_18540430_SNP [dm6]	C	T	1.287e^-4	0.713	INTRON Pde11
X	8606186	X_8606186_SNP [dm3] X_8712153_SNP [dm6]	T	C	1.289e^-4	0.713	DOWNSTREAM CG2004 INTRON Hexo2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	17768704	3L_17768704_SNP [dm3] 3L_17775604_SNP [dm6]	G	A	1.293e^-4	0.713	INTERGENIC
3L	17768735	3L_17768735_SNP [dm3] 3L_17775635_SNP [dm6]	C	T	1.294e^-4	0.713	INTERGENIC
X	20751689	X_20751689_SNP [dm3] X_20880662_SNP [dm6]	G	C	1.303e^-4	0.713	INTRON shakB
X	5051251	X_5051251_SNP [dm3] X_5157218_SNP [dm6]	G	A	1.306e^-4	0.713	INTRON rg & 1 other
3R	13642584	3R_13642584_SNP [dm3] 3R_17816862_SNP [dm6]	C	T	1.306e^-4	0.713	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3282449	3L_3282449_SNP [dm3] 3L_3282449_SNP [dm6]	A	C	1.308e^-4	0.713	INTRON CG12017
X	12342521	X_12342521_SNP [dm3] X_12448488_SNP [dm6]	C	G	1.310e^-4	0.713	INTRON Pkcdelta
2L	6380445	2L_6380445_SNP [dm3] 2L_6380445_SNP [dm6]	A	G	1.313e^-4	0.713	UPSTREAM CG9507 INTRON CG42368
3R	10238767	3R_10238767_SNP [dm3] 3R_14413045_SNP [dm6]	A	T	1.319e^-4	0.713	INTRON cv-c
3R	12766433	3R_12766433_SNP [dm3] 3R_16940711_SNP [dm6]	G	A	1.320e^-4	0.713	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19599724	2R_19599724_SNP [dm3] 2R_23712201_SNP [dm6]	G	A	1.321e^-4	0.713	INTERGENIC
3R	3044851	3R_3044851_SNP [dm3] 3R_7219129_SNP [dm6]	G	A	1.323e^-4	0.713	SPLICE_SITE_REGION CG14605 INTRON CG14605
2L	12722126	2L_12722126_SNP [dm3] 2L_12722126_SNP [dm6]	A	C	1.341e^-4	0.713	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	789024	3R_789024_SNP [dm3] 3R_4963302_SNP [dm6]	C	T	1.341e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2020573	3L_2020573_SNP [dm3] 3L_2020573_SNP [dm6]	T	C	1.343e^-4	0.713	NON_SYNONYMOUS_CODING CG42357
3R	15453694	3R_15453694_SNP [dm3] 3R_19627972_SNP [dm6]	A	G	1.351e^-4	0.713	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
2R	12509373	2R_12509373_SNP [dm3] 2R_16621868_SNP [dm6]	T	A	1.354e^-4	0.713	INTRON CG5065	TF binding site mE1_TFBS_cad
2R	6425822	2R_6425822_SNP [dm3] 2R_10538317_SNP [dm6]	A	G	1.365e^-4	0.713	INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17550306	2L_17550306_SNP [dm3] 2L_17550306_SNP [dm6]	A	G	1.367e^-4	0.713	INTERGENIC
2L	19875112	2L_19875112_SNP [dm3] 2L_19875112_SNP [dm6]	C	A	1.369e^-4	0.713	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17553375	2R_17553375_SNP [dm3] 2R_21665870_SNP [dm6]	A	G	1.383e^-4	0.713	UTR_3_PRIME CG42362 & 1 other UPSTREAM CG42364 & 1 other
2R	17553386	2R_17553386_SNP [dm3] 2R_21665881_SNP [dm6]	G	A	1.383e^-4	0.713	UTR_3_PRIME CG42362 & 1 other UPSTREAM CG42364 & 1 other
X	17586758	X_17586758_SNP [dm3] X_17692725_SNP [dm6]	T	C	1.383e^-4	0.713	INTRON chas
3L	13200218	3L_13200218_DEL [dm3] 3L_13207118_DEL [dm6]	TAAT	T	1.392e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15680279	3R_15680279_SNP [dm3] 3R_19854557_SNP [dm6]	A	G	1.399e^-4	0.713	SYNONYMOUS_CODING Ire1 DOWNSTREAM CG4662	TF binding site mE1_TFBS_cad
3L	9873289	3L_9873289_SNP [dm3] 3L_9880189_SNP [dm6]	C	A	1.404e^-4	0.713	INTRON CG34382	TF binding site mE1_TFBS_chinmo
3L	12092912	3L_12092912_SNP [dm3] 3L_12099812_SNP [dm6]	C	A	1.404e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16282127	3R_16282127_DEL [dm3] 3R_20456405_DEL [dm6]	ATT	A	1.408e^-4	0.713	INTRON Gfrl
3R	16282131	3R_16282131_SNP [dm3] 3R_20456409_SNP [dm6]	A	C	1.408e^-4	0.713	INTRON Gfrl
3L	5984434	3L_5984434_SNP [dm3] 3L_5991334_SNP [dm6]	A	T	1.408e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10911372	3L_10911372_SNP [dm3] 3L_10918272_SNP [dm6]	C	T	1.409e^-4	0.713	INTERGENIC
2L	19899049	2L_19899049_SNP [dm3] 2L_19899049_SNP [dm6]	C	A	1.419e^-4	0.713	INTRON sick
3R	18650358	3R_18650358_INS [dm3] 3R_22824636_INS [dm6]	C	CAGGATGC	1.423e^-4	0.713	EXON CR44350	TF binding site mE1_TFBS_inv
2R	19600084	2R_19600084_SNP [dm3] 2R_23712561_SNP [dm6]	T	C	1.427e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2815957	2L_2815957_SNP [dm3] 2L_2815957_SNP [dm6]	G	A	1.429e^-4	0.713	UPSTREAM CG15400 DOWNSTREAM Duox INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14490440	2R_14490440_SNP [dm3] 2R_18602935_SNP [dm6]	G	T	1.433e^-4	0.713	INTRON GEFmeso
2L	12089860	2L_12089860_SNP [dm3] 2L_12089860_SNP [dm6]	C	A	1.437e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2077514	2R_2077514_SNP [dm3] 2R_6190009_SNP [dm6]	C	T	1.442e^-4	0.713	UPSTREAM tRNA:N5:42Ad DOWNSTREAM tRNA:N5:42Ae INTRON Ptr	TF binding site BDTNP1_TFBS_dl
3L	7794057	3L_7794057_SNP [dm3] 3L_7800957_SNP [dm6]	T	C	1.442e^-4	0.713	INTRON CG32369
3R	15521801	3R_15521801_SNP [dm3] 3R_19696079_SNP [dm6]	G	A	1.449e^-4	0.713	INTRON Naam
3R	12899201	3R_12899201_SNP [dm3] 3R_17073479_SNP [dm6]	A	C	1.451e^-4	0.713	UPSTREAM Ns1 DOWNSTREAM Keap1 INTRON mRpS11	TF binding site BDTNP1_TFBS_dl
X	8502713	X_8502713_SNP [dm3] X_8608680_SNP [dm6]	C	A	1.453e^-4	0.713	INTERGENIC
3R	24747991	3R_24747991_SNP [dm3] 3R_28922269_SNP [dm6]	G	C	1.455e^-4	0.713	UTR_3_PRIME Doa UPSTREAM CG11828 DOWNSTREAM Doa
2R	2045311	2R_2045311_SNP [dm3] 2R_6157806_SNP [dm6]	T	G	1.457e^-4	0.713	UPSTREAM EcR & 1 other INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11487174	3L_11487174_SNP [dm3] 3L_11494074_SNP [dm6]	C	A	1.459e^-4	0.713	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24682414	3R_24682414_SNP [dm3] 3R_28856692_SNP [dm6]	T	C	1.460e^-4	0.713	INTRON spg & 1 other	TF binding site BDTNP1_TFBS_dl
2L	20550001	2L_20550001_SNP [dm3] 2L_20550001_SNP [dm6]	T	C	1.467e^-4	0.713	INTERGENIC
3R	9006701	3R_9006701_SNP [dm3] 3R_13180979_SNP [dm6]	A	T	1.467e^-4	0.713	UPSTREAM CG8138 INTERGENIC
3L	6836149	3L_6836149_SNP [dm3] 3L_6843049_SNP [dm6]	A	G	1.473e^-4	0.713	INTERGENIC
3L	8580327	3L_8580327_SNP [dm3] 3L_8587227_SNP [dm6]	A	G	1.484e^-4	0.713	INTRON CG43078	TF binding site mE1_TFBS_chinmo
3L	10567400	3L_10567400_DEL [dm3] 3L_10574300_DEL [dm6]	TT	A	1.485e^-4	0.713	INTRON A2bp1
3R	25594783	3R_25594783_SNP [dm3] 3R_29769061_SNP [dm6]	T	C	1.485e^-4	0.713	INTRON kay
X	18367526	X_18367526_SNP [dm3] X_18473493_SNP [dm6]	T	G	1.486e^-4	0.713	INTRON CG32547
3R	23319201	3R_23319201_SNP [dm3] 3R_27493479_SNP [dm6]	G	T	1.495e^-4	0.713	INTERGENIC
X	21149428	X_21149428_SNP [dm3] X_21278401_SNP [dm6]	C	A	1.495e^-4	0.713	INTRON CG32521
2L	13353426	2L_13353426_SNP [dm3] 2L_13353426_SNP [dm6]	G	A	1.499e^-4	0.713	INTRON CG9395
X	18730163	X_18730163_SNP [dm3] X_18836130_SNP [dm6]	C	G	1.505e^-4	0.713	INTRON Pvf1
3R	18648848	3R_18648848_SNP [dm3] 3R_22823126_SNP [dm6]	T	C	1.508e^-4	0.713	DOWNSTREAM CR44350 INTERGENIC
2R	19937565	2R_19937565_SNP [dm3] 2R_24050042_SNP [dm6]	C	T	1.509e^-4	0.713	SYNONYMOUS_CODING sei
3L	14188817	3L_14188817_SNP [dm3] 3L_14195717_SNP [dm6]	T	C	1.509e^-4	0.713	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	5809265	X_5809265_SNP [dm3] X_5915232_SNP [dm6]	G	A	1.514e^-4	0.713	UTR_5_PRIME CG3011 DOWNSTREAM CR44108 INTRON CG3011
X	16429268	X_16429268_INS [dm3] X_16535235_INS [dm6]	A	AGCCATCTACTCCAAATATA...	1.515e^-4	0.713	INTERGENIC
2L	12898141	2L_12898141_SNP [dm3] 2L_12898141_SNP [dm6]	A	G	1.515e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_cad
2R	2058070	2R_2058070_DEL [dm3] 2R_6170565_DEL [dm6]	TAG	A	1.521e^-4	0.713	DOWNSTREAM tRNA:R2:42Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8925560	2R_8925560_SNP [dm3] 2R_13038055_SNP [dm6]	C	T	1.522e^-4	0.713	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	606906	2L_606906_SNP [dm3] 2L_606906_SNP [dm6]	C	A	1.525e^-4	0.713	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8606208	X_8606208_SNP [dm3] X_8712175_SNP [dm6]	C	T	1.530e^-4	0.713	DOWNSTREAM CG2004 INTRON Hexo2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8485591	3R_8485591_SNP [dm3] 3R_12659869_SNP [dm6]	A	G	1.530e^-4	0.713	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
X	8606192	X_8606192_SNP [dm3] X_8712159_SNP [dm6]	T	C	1.536e^-4	0.713	DOWNSTREAM CG2004 INTRON Hexo2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	6878746	3L_6878746_SNP [dm3] 3L_6885646_SNP [dm6]	G	A	1.537e^-4	0.713	INTERGENIC
3L	10560991	3L_10560991_SNP [dm3] 3L_10567891_SNP [dm6]	C	T	1.540e^-4	0.713	INTRON A2bp1
3L	2572192	3L_2572192_SNP [dm3] 3L_2572192_SNP [dm6]	A	T	1.542e^-4	0.713	INTRON msn
X	16375035	X_16375035_SNP [dm3] X_16481002_SNP [dm6]	T	G	1.544e^-4	0.713	INTRON para
X	11349981	X_11349981_SNP [dm3] X_11455948_SNP [dm6]	C	A	1.547e^-4	0.713	NON_SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
3L	6837445	3L_6837445_INS [dm3] 3L_6844345_INS [dm6]	C	CAGGTTCGTC	1.548e^-4	0.713	INTERGENIC
2R	12476652	2R_12476652_SNP [dm3] 2R_16589147_SNP [dm6]	A	G	1.548e^-4	0.713	UTR_5_PRIME CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7127033	2R_7127033_SNP [dm3] 2R_11239528_SNP [dm6]	C	A	1.550e^-4	0.713	UTR_3_PRIME CG13215 UPSTREAM CG13216	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	12837040	2R_12837040_SNP [dm3] 2R_16949535_SNP [dm6]	A	T	1.551e^-4	0.713	SYNONYMOUS_CODING mute	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20327338	X_20327338_SNP [dm3] X_20456311_SNP [dm6]	T	A	1.552e^-4	0.713	INTRON CG32506
2L	1252043	2L_1252043_SNP [dm3] 2L_1252043_SNP [dm6]	C	A	1.560e^-4	0.713	INTERGENIC
3L	10567358	3L_10567358_DEL [dm3] 3L_10574258_DEL [dm6]	AAAGTAAA	A	1.563e^-4	0.713	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna
3R	6269628	3R_6269628_SNP [dm3] 3R_10443906_SNP [dm6]	C	A	1.571e^-4	0.713	INTERGENIC
X	14808274	X_14808274_SNP [dm3] X_14914241_SNP [dm6]	T	C	1.575e^-4	0.713	UPSTREAM CG12398 INTRON Flo2
3R	16282159	3R_16282159_SNP [dm3] 3R_20456437_SNP [dm6]	C	A	1.577e^-4	0.713	INTRON Gfrl
2L	20676337	2L_20676337_SNP [dm3] 2L_20676337_SNP [dm6]	G	A	1.580e^-4	0.713	SYNONYMOUS_CODING ik2 UPSTREAM CG31678	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14015204	2R_14015204_SNP [dm3] 2R_18127699_SNP [dm6]	G	T	1.587e^-4	0.713	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	8452072	X_8452072_SNP [dm3] X_8558039_SNP [dm6]	T	C	1.587e^-4	0.713	SYNONYMOUS_CODING IntS4 DOWNSTREAM CG12112	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20309693	3L_20309693_DEL [dm3] 3L_20316593_DEL [dm6]	CC	C	1.591e^-4	0.713	UPSTREAM Spn77Ba DOWNSTREAM alphaSnap INTRON CR43875
2L	9748285	2L_9748285_SNP [dm3] 2L_9748285_SNP [dm6]	A	G	1.593e^-4	0.713	SYNONYMOUS_CODING Cyp4e3
3R	20103618	3R_20103618_SNP [dm3] 3R_24277896_SNP [dm6]	G	T	1.594e^-4	0.713	NON_SYNONYMOUS_CODING Orct	TF binding site mE1_TFBS_chinmo
3R	22715363	3R_22715363_SNP [dm3] 3R_26889641_SNP [dm6]	A	G	1.602e^-4	0.713	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	21905489	2L_21905489_DEL [dm3] 2L_21905489_DEL [dm6]	TT	T	1.605e^-4	0.713	UPSTREAM CG1428 INTERGENIC
2L	13353489	2L_13353489_SNP [dm3] 2L_13353489_SNP [dm6]	C	G	1.609e^-4	0.713	INTRON CG9395
2L	13253849	2L_13253849_SNP [dm3] 2L_13253849_SNP [dm6]	A	G	1.616e^-4	0.713	INTRON CG31728
2L	12897887	2L_12897887_SNP [dm3] 2L_12897887_SNP [dm6]	T	G	1.617e^-4	0.713	INTERGENIC
2L	606986	2L_606986_SNP [dm3] 2L_606986_SNP [dm6]	A	G	1.618e^-4	0.713	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3608212	2L_3608212_SNP [dm3] 2L_3608212_SNP [dm6]	T	G	1.623e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12795711	2L_12795711_SNP [dm3] 2L_12795711_SNP [dm6]	G	A	1.644e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12795760	2L_12795760_SNP [dm3] 2L_12795760_SNP [dm6]	C	A	1.644e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12886534	2L_12886534_SNP [dm3] 2L_12886534_SNP [dm6]	T	G	1.649e^-4	0.713	INTERGENIC
2L	12898067	2L_12898067_SNP [dm3] 2L_12898067_SNP [dm6]	T	A	1.650e^-4	0.713	INTERGENIC
3R	4073686	3R_4073686_SNP [dm3] 3R_8247964_SNP [dm6]	T	G	1.662e^-4	0.713	UTR_3_PRIME CG18749 & 1 other UPSTREAM CG15864 DOWNSTREAM CG33722 & 1 other	TF binding site mE1_TFBS_HSA
3L	2682970	3L_2682970_DEL [dm3] 3L_2682970_DEL [dm6]	ACTAAA	A	1.663e^-4	0.713	INTRON Fife
3L	2682982	3L_2682982_SNP [dm3] 3L_2682982_SNP [dm6]	C	G	1.663e^-4	0.713	INTRON Fife
X	4236958	X_4236958_SNP [dm3] X_4342925_SNP [dm6]	C	T	1.664e^-4	0.713	INTRON norpA
3L	2016107	3L_2016107_SNP [dm3] 3L_2016107_SNP [dm6]	T	A	1.666e^-4	0.713	INTERGENIC
2L	12898022	2L_12898022_SNP [dm3] 2L_12898022_SNP [dm6]	T	A	1.669e^-4	0.713	INTERGENIC
X	18212540	X_18212540_SNP [dm3] X_18318507_SNP [dm6]	A	C	1.670e^-4	0.713	INTRON CG6023
3R	3831113	3R_3831113_SNP [dm3] 3R_8005391_SNP [dm6]	A	T	1.672e^-4	0.713	UTR_3_PRIME CG2698 DOWNSTREAM CG2767 INTRON CG2698
3L	14188732	3L_14188732_SNP [dm3] 3L_14195632_SNP [dm6]	T	G	1.676e^-4	0.713	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5677293	3L_5677293_SNP [dm3] 3L_5684193_SNP [dm6]	G	A	1.679e^-4	0.713	INTRON sif
2L	6380462	2L_6380462_SNP [dm3] 2L_6380462_SNP [dm6]	C	A	1.684e^-4	0.713	UPSTREAM CG9507 INTRON CG42368
2R	8925552	2R_8925552_SNP [dm3] 2R_13038047_SNP [dm6]	A	T	1.692e^-4	0.713	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15135635	2R_15135635_SNP [dm3] 2R_19248130_SNP [dm6]	G	A	1.693e^-4	0.713	INTERGENIC
2L	7986366	2L_7986366_SNP [dm3] 2L_7986366_SNP [dm6]	C	T	1.706e^-4	0.713	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
3L	14188802	3L_14188802_SNP [dm3] 3L_14195702_SNP [dm6]	A	T	1.706e^-4	0.713	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	17542627	2L_17542627_SNP [dm3] 2L_17542627_SNP [dm6]	T	C	1.706e^-4	0.713	DOWNSTREAM CR43304 INTERGENIC
2R	2073631	2R_2073631_SNP [dm3] 2R_6186126_SNP [dm6]	G	T	1.707e^-4	0.713	INTRON Ptr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8388944	3L_8388944_SNP [dm3] 3L_8395844_SNP [dm6]	A	T	1.708e^-4	0.713	UPSTREAM CG7120 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	21735867	3R_21735867_SNP [dm3] 3R_25910145_SNP [dm6]	C	T	1.714e^-4	0.713	SYNONYMOUS_CODING CG42235
2L	5228454	2L_5228454_SNP [dm3] 2L_5228454_SNP [dm6]	A	T	1.714e^-4	0.713	INTRON tkv
2L	8196316	2L_8196316_SNP [dm3] 2L_8196316_SNP [dm6]	C	G	1.716e^-4	0.713	SYNONYMOUS_CODING CG8475 UPSTREAM CG8460 EXON CR44116	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	7707150	2L_7707150_SNP [dm3] 2L_7707150_SNP [dm6]	C	G	1.727e^-4	0.713	SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990	TF binding site mE1_TFBS_inv
3L	10563162	3L_10563162_SNP [dm3] 3L_10570062_SNP [dm6]	C	T	1.728e^-4	0.713	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	19871594	2L_19871594_DEL [dm3] 2L_19871594_DEL [dm6]	AGAGATTTGACGAAATCCAG...	A	1.735e^-4	0.713	INTRON sick	TF binding site mE1_TFBS_inv
2L	10428679	2L_10428679_SNP [dm3] 2L_10428679_SNP [dm6]	T	A	1.738e^-4	0.713	UPSTREAM CG5188 DOWNSTREAM KdelR INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18730153	X_18730153_DEL [dm3] X_18836120_DEL [dm6]	TCT	T	1.745e^-4	0.713	INTRON Pvf1
2L	9514711	2L_9514711_SNP [dm3] 2L_9514711_SNP [dm6]	A	G	1.746e^-4	0.713	INTRON CG33298
3L	19092722	3L_19092722_SNP [dm3] 3L_19099622_SNP [dm6]	G	T	1.751e^-4	0.713	SYNONYMOUS_CODING Gem2 DOWNSTREAM CG14079	TF binding site mE1_TFBS_cad
2R	17553405	2R_17553405_SNP [dm3] 2R_21665900_SNP [dm6]	T	C	1.757e^-4	0.713	UTR_3_PRIME CG42362 & 1 other UPSTREAM CG42364 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	15453633	3R_15453633_DEL [dm3] 3R_19627911_DEL [dm6]	TCAT	T	1.759e^-4	0.713	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
X	12988046	X_12988046_SNP [dm3] X_13094013_SNP [dm6]	T	C	1.760e^-4	0.713	UPSTREAM CG2200 DOWNSTREAM lic INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26870653	3R_26870653_SNP [dm3] 3R_31044931_SNP [dm6]	G	A	1.768e^-4	0.713	SYNONYMOUS_CODING CG33920 INTRON CanA1
2L	13253863	2L_13253863_SNP [dm3] 2L_13253863_SNP [dm6]	C	T	1.769e^-4	0.713	INTRON CG31728
2L	10094222	2L_10094222_SNP [dm3] 2L_10094222_SNP [dm6]	T	C	1.770e^-4	0.713	INTRON CG44153 & 1 other
2L	12795736	2L_12795736_SNP [dm3] 2L_12795736_SNP [dm6]	G	A	1.772e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21873411	2L_21873411_DEL [dm3] 2L_21873411_DEL [dm6]	AAAGCTATCTTTAA...	A	1.774e^-4	0.713	INTERGENIC
2R	15400942	2R_15400942_SNP [dm3] 2R_19513437_SNP [dm6]	A	G	1.791e^-4	0.713	SYNONYMOUS_CODING Ir56d
2L	6026065	2L_6026065_DEL [dm3] 2L_6026065_DEL [dm6]	TT	T	1.792e^-4	0.713	INTRON CG9109
2R	5928073	2R_5928073_SNP [dm3] 2R_10040568_SNP [dm6]	G	A	1.794e^-4	0.713	UPSTREAM oys DOWNSTREAM CG34220 INTRON oys
2L	9749103	2L_9749103_SNP [dm3] 2L_9749103_SNP [dm6]	C	G	1.795e^-4	0.713	INTRON Cyp4e3
2R	12298627	2R_12298627_SNP [dm3] 2R_16411122_SNP [dm6]	T	G	1.800e^-4	0.713	INTRON Sema-2b
2L	17254052	2L_17254052_SNP [dm3] 2L_17254052_SNP [dm6]	C	G	1.802e^-4	0.713	INTRON beat-IIIc
2L	12774310	2L_12774310_SNP [dm3] 2L_12774310_SNP [dm6]	C	G	1.803e^-4	0.713	INTERGENIC
3R	16304247	3R_16304247_SNP [dm3] 3R_20478525_SNP [dm6]	A	G	1.808e^-4	0.713	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6444540	X_6444540_SNP [dm3] X_6550507_SNP [dm6]	T	A	1.810e^-4	0.713	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
3R	17619936	3R_17619936_SNP [dm3] 3R_21794214_SNP [dm6]	A	T	1.812e^-4	0.713	INTRON CASK	TF binding site mE1_TFBS_HSA
2R	7127614	2R_7127614_SNP [dm3] 2R_11240109_SNP [dm6]	G	A	1.813e^-4	0.713	UTR_5_PRIME CG13215	TF binding site mE1_TFBS_sens
3L	4605760	3L_4605760_SNP [dm3] 3L_4605760_SNP [dm6]	G	A	1.815e^-4	0.713	INTRON Src64B	TF binding site mE1_TFBS_sbb
2L	12886536	2L_12886536_SNP [dm3] 2L_12886536_SNP [dm6]	A	T	1.819e^-4	0.713	INTERGENIC
3R	22350171	3R_22350171_SNP [dm3] 3R_26524449_SNP [dm6]	G	T	1.819e^-4	0.713	INTRON plum
3L	6848622	3L_6848622_DEL [dm3] 3L_6855522_DEL [dm6]	GG	C	1.824e^-4	0.713	INTERGENIC
2R	13580741	2R_13580741_SNP [dm3] 2R_17693236_SNP [dm6]	A	G	1.828e^-4	0.713	INTRON swi2
3L	14188790	3L_14188790_SNP [dm3] 3L_14195690_SNP [dm6]	G	A	1.829e^-4	0.713	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15680559	X_15680559_SNP [dm3] X_15786526_SNP [dm6]	A	C	1.833e^-4	0.713	NON_SYNONYMOUS_CODING mRpS30 UPSTREAM Paf-AHalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20300999	2R_20300999_SNP [dm3] 2R_24413476_SNP [dm6]	A	G	1.839e^-4	0.713	NON_SYNONYMOUS_CODING CG45068 UTR_5_PRIME CG45069	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	13544320	2R_13544320_SNP [dm3] 2R_17656815_SNP [dm6]	G	A	1.841e^-4	0.713	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi
X	4310763	X_4310763_SNP [dm3] X_4416730_SNP [dm6]	A	G	1.843e^-4	0.713	INTRON CR32773 & 1 other
3L	14580641	3L_14580641_SNP [dm3] 3L_14587541_SNP [dm6]	C	G	1.851e^-4	0.713	INTRON HGTX
2R	2047288	2R_2047288_SNP [dm3] 2R_6159783_SNP [dm6]	T	A	1.851e^-4	0.713	DOWNSTREAM CR43904 INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20612463	X_20612463_SNP [dm3] X_20741436_SNP [dm6]	A	C	1.852e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7707009	2L_7707009_SNP [dm3] 2L_7707009_SNP [dm6]	G	A	1.862e^-4	0.716	SYNONYMOUS_CODING Tep3	TF binding site mE1_TFBS_inv
3L	5706215	3L_5706215_SNP [dm3] 3L_5713115_SNP [dm6]	T	C	1.867e^-4	0.716	UPSTREAM CG44521 INTRON sif
2L	13353543	2L_13353543_SNP [dm3] 2L_13353543_SNP [dm6]	G	A	1.875e^-4	0.716	INTRON CG9395
3L	7732189	3L_7732189_SNP [dm3] 3L_7739089_SNP [dm6]	C	T	1.876e^-4	0.716	INTRON CG32373 & 1 other
2L	17517986	2L_17517986_SNP [dm3] 2L_17517986_SNP [dm6]	A	G	1.893e^-4	0.717	INTRON Dhc36C	TF binding site mE1_TFBS_cad
3L	15701902	3L_15701902_DEL [dm3] 3L_15708802_DEL [dm6]	CAAACGATAGACTC...	C	1.899e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
X	14304239	X_14304239_SNP [dm3] X_14410206_SNP [dm6]	A	G	1.909e^-4	0.717	INTRON dpr8
2L	19058079	2L_19058079_SNP [dm3] 2L_19058079_SNP [dm6]	G	T	1.917e^-4	0.717	UTR_3_PRIME CG10492	TF binding site mE1_TFBS_cad
3R	3044865	3R_3044865_SNP [dm3] 3R_7219143_SNP [dm6]	T	A	1.919e^-4	0.717	INTRON CG14605
3R	8485694	3R_8485694_SNP [dm3] 3R_12659972_SNP [dm6]	C	A	1.926e^-4	0.717	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
2L	10088353	2L_10088353_SNP [dm3] 2L_10088353_SNP [dm6]	C	G	1.927e^-4	0.717	INTRON CG44153	TF binding site BDTNP1_TFBS_twi
3L	10561289	3L_10561289_SNP [dm3] 3L_10568189_SNP [dm6]	C	G	1.931e^-4	0.717	NON_SYNONYMOUS_CODING A2bp1 INTRON A2bp1
3R	13690663	3R_13690663_SNP [dm3] 3R_17864941_SNP [dm6]	A	T	1.954e^-4	0.717	NON_SYNONYMOUS_CODING tinc
2L	1165593	2L_1165593_SNP [dm3] 2L_1165593_SNP [dm6]	C	A	1.955e^-4	0.717	SYNONYMOUS_CODING IntS14 UPSTREAM CG14341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18231986	2R_18231986_SNP [dm3] 2R_22344481_SNP [dm6]	G	A	1.961e^-4	0.717	INTRON Liprin-gamma
X	14808374	X_14808374_SNP [dm3] X_14914341_SNP [dm6]	C	T	1.962e^-4	0.717	UPSTREAM CG12398 INTRON Flo2
3R	18044819	3R_18044819_SNP [dm3] 3R_22219097_SNP [dm6]	T	A	1.964e^-4	0.717	INTRON SKIP	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	6029428	X_6029428_SNP [dm3] X_6135395_SNP [dm6]	G	A	1.969e^-4	0.717	INTRON Ca-alpha1T
2L	18540425	2L_18540425_SNP [dm3] 2L_18540425_SNP [dm6]	A	T	1.970e^-4	0.717	INTRON Pde11
3L	8587917	3L_8587917_SNP [dm3] 3L_8594817_SNP [dm6]	C	G	1.971e^-4	0.717	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2749901	3L_2749901_SNP [dm3] 3L_2749901_SNP [dm6]	T	A	1.978e^-4	0.717	INTRON Mrtf
2L	12898158	2L_12898158_SNP [dm3] 2L_12898158_SNP [dm6]	C	T	1.985e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
X	9978320	X_9978320_SNP [dm3] X_10084287_SNP [dm6]	C	A	1.986e^-4	0.717	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12798904	2L_12798904_SNP [dm3] 2L_12798904_SNP [dm6]	C	T	1.987e^-4	0.717	INTERGENIC
X	16811044	X_16811044_SNP [dm3] X_16917011_SNP [dm6]	G	A	2.001e^-4	0.717	INTRON CG4928	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	18639838	3R_18639838_SNP [dm3] 3R_22814116_SNP [dm6]	T	C	2.007e^-4	0.717	DOWNSTREAM CG13840 INTERGENIC
X	16997410	X_16997410_SNP [dm3] X_17103377_SNP [dm6]	G	A	2.011e^-4	0.717	SYNONYMOUS_CODING CG4991
2L	7665734	2L_7665734_SNP [dm3] 2L_7665734_SNP [dm6]	C	T	2.012e^-4	0.717	UPSTREAM Myo28B1 INTRON Slob
2R	2050602	2R_2050602_SNP [dm3] 2R_6163097_SNP [dm6]	G	A	2.018e^-4	0.717	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Ab & 1 other INTRON EcR	TF binding site mE1_TFBS_cad
2R	16811918	2R_16811918_SNP [dm3] 2R_20924413_SNP [dm6]	G	A	2.020e^-4	0.717	INTRON Rx
X	9463274	X_9463274_SNP [dm3] X_9569241_SNP [dm6]	C	T	2.022e^-4	0.717	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5355267	2R_5355267_SNP [dm3] 2R_9467762_SNP [dm6]	A	T	2.022e^-4	0.717	INTRON Camta
2L	3698448	2L_3698448_SNP [dm3] 2L_3698448_SNP [dm6]	G	T	2.027e^-4	0.717	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
2R	2058934	2R_2058934_SNP [dm3] 2R_6171429_SNP [dm6]	A	G	2.030e^-4	0.717	UPSTREAM tRNA:CR30316 DOWNSTREAM tRNA:K2:42Ad INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13541323	2R_13541323_SNP [dm3] 2R_17653818_SNP [dm6]	C	T	2.031e^-4	0.717	INTRON CCHa1-R
3R	22543921	3R_22543921_INS [dm3] 3R_26718199_INS [dm6]	A	AA	2.032e^-4	0.717	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24723192	3R_24723192_SNP [dm3] 3R_28897470_SNP [dm6]	T	C	2.036e^-4	0.717	INTRON Doa
2L	921857	2L_921857_SNP [dm3] 2L_921857_SNP [dm6]	T	G	2.037e^-4	0.717	UPSTREAM CG4341 INTERGENIC
3R	13524091	3R_13524091_SNP [dm3] 3R_17698369_SNP [dm6]	C	T	2.040e^-4	0.717	SYNONYMOUS_CODING osa	TF binding site mE1_TFBS_chinmo
3R	23308671	3R_23308671_SNP [dm3] 3R_27482949_SNP [dm6]	C	G	2.042e^-4	0.717	DOWNSTREAM Cyp6a18 INTERGENIC
3L	6855346	3L_6855346_SNP [dm3] 3L_6862246_SNP [dm6]	A	T	2.049e^-4	0.717	INTERGENIC
2L	2806801	2L_2806801_SNP [dm3] 2L_2806801_SNP [dm6]	G	T	2.049e^-4	0.717	INTRON daw
2R	8607330	2R_8607330_SNP [dm3] 2R_12719825_SNP [dm6]	T	C	2.055e^-4	0.717	INTRON CG42663
X	8502740	X_8502740_SNP [dm3] X_8608707_SNP [dm6]	C	T	2.059e^-4	0.717	INTERGENIC
3R	25459967	3R_25459967_SNP [dm3] 3R_29634245_SNP [dm6]	G	A	2.065e^-4	0.717	INTRON Dop1R2
3R	27201221	3R_27201221_SNP [dm3] 3R_31375499_SNP [dm6]	G	A	2.067e^-4	0.717	INTERGENIC
3L	12248654	3L_12248654_SNP [dm3] 3L_12255554_SNP [dm6]	T	A	2.070e^-4	0.717	INTRON app	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7940313	2L_7940313_SNP [dm3] 2L_7940313_SNP [dm6]	G	A	2.077e^-4	0.717	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
3R	13639765	3R_13639765_SNP [dm3] 3R_17814043_SNP [dm6]	A	G	2.078e^-4	0.717	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14304243	X_14304243_SNP [dm3] X_14410210_SNP [dm6]	A	G	2.086e^-4	0.717	INTRON dpr8
3L	14426238	3L_14426238_SNP [dm3] 3L_14433138_SNP [dm6]	T	C	2.087e^-4	0.717	INTRON bbg
X	5021506	X_5021506_SNP [dm3] X_5127473_SNP [dm6]	G	T	2.087e^-4	0.717	INTRON rg & 1 other
X	12890308	X_12890308_SNP [dm3] X_12996275_SNP [dm6]	C	A	2.088e^-4	0.717	INTRON rad	TF binding site BDTNP1_TFBS_twi
2L	13573645	2L_13573645_SNP [dm3] 2L_13573645_SNP [dm6]	A	G	2.091e^-4	0.717	INTRON kuz	TF binding site BDTNP1_TFBS_twi
2L	17550678	2L_17550678_SNP [dm3] 2L_17550678_SNP [dm6]	T	A	2.092e^-4	0.717	INTERGENIC
X	7908491	X_7908491_SNP [dm3] X_8014458_SNP [dm6]	C	G	2.092e^-4	0.717	INTRON Tbh
2R	7127509	2R_7127509_SNP [dm3] 2R_11240004_SNP [dm6]	T	G	2.120e^-4	0.717	SYNONYMOUS_CODING CG13215	TF binding site mE1_TFBS_sens
2L	14000418	2L_14000418_SNP [dm3] 2L_14000418_SNP [dm6]	T	A	2.121e^-4	0.717	INTRON rk
X	4859927	X_4859927_SNP [dm3] X_4965894_SNP [dm6]	C	T	2.125e^-4	0.717	INTRON CR44833	regulatory region REDfly_CRMs
2L	12722080	2L_12722080_SNP [dm3] 2L_12722080_SNP [dm6]	C	G	2.146e^-4	0.717	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	4573812	X_4573812_SNP [dm3] X_4679779_SNP [dm6]	C	T	2.147e^-4	0.717	UPSTREAM rap DOWNSTREAM Pp2C1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14447084	2L_14447084_SNP [dm3] 2L_14447084_SNP [dm6]	T	A	2.150e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13455173	3L_13455173_SNP [dm3] 3L_13462073_SNP [dm6]	A	C	2.150e^-4	0.717	INTRON CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18318067	3L_18318067_SNP [dm3] 3L_18324967_SNP [dm6]	A	T	2.152e^-4	0.717	INTERGENIC
3L	9704278	3L_9704278_SNP [dm3] 3L_9711178_SNP [dm6]	T	A	2.153e^-4	0.717	DOWNSTREAM CG16711 INTRON SH3PX1
X	4333777	X_4333777_SNP [dm3] X_4439744_SNP [dm6]	G	A	2.169e^-4	0.717	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	14210635	3L_14210635_DEL [dm3] 3L_14217535_DEL [dm6]	GTTCTCGGTTACTAG...	G	2.182e^-4	0.717	UPSTREAM CG7768 INTRON nuf
3R	1961612	3R_1961612_SNP [dm3] 3R_6135890_SNP [dm6]	T	A	2.184e^-4	0.717	INTERGENIC
3L	10567349	3L_10567349_DEL [dm3] 3L_10574249_DEL [dm6]	AATA	A	2.187e^-4	0.717	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna
2L	5265787	2L_5265787_SNP [dm3] 2L_5265787_SNP [dm6]	G	A	2.188e^-4	0.717	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	11051174	3L_11051174_SNP [dm3] 3L_11058074_SNP [dm6]	T	C	2.189e^-4	0.717	SYNONYMOUS_CODING CG7888	TF binding site mE1_TFBS_cad
X	6444537	X_6444537_SNP [dm3] X_6550504_SNP [dm6]	A	G	2.190e^-4	0.717	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
X	8439675	X_8439675_SNP [dm3] X_8545642_SNP [dm6]	T	C	2.191e^-4	0.717	SYNONYMOUS_CODING Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2339654	2L_2339654_SNP [dm3] 2L_2339654_SNP [dm6]	T	A	2.193e^-4	0.717	SYNONYMOUS_CODING eys INTRON CG9967
X	6444494	X_6444494_SNP [dm3] X_6550461_SNP [dm6]	G	C	2.199e^-4	0.717	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
3L	7167626	3L_7167626_SNP [dm3] 3L_7174526_SNP [dm6]	T	G	2.199e^-4	0.717	UTR_3_PRIME Dscam2 INTRON Dscam2
2R	2037872	2R_2037872_SNP [dm3] 2R_6150367_SNP [dm6]	A	G	2.203e^-4	0.717	INTRON EcR
3L	5639872	3L_5639872_SNP [dm3] 3L_5646772_SNP [dm6]	G	A	2.204e^-4	0.717	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26867642	3R_26867642_SNP [dm3] 3R_31041920_SNP [dm6]	A	C	2.208e^-4	0.717	INTRON CanA1
3R	25360789	3R_25360789_SNP [dm3] 3R_29535067_SNP [dm6]	C	T	2.209e^-4	0.717	EXON CR43613	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18730160	X_18730160_SNP [dm3] X_18836127_SNP [dm6]	G	T	2.210e^-4	0.717	INTRON Pvf1
2R	15967337	2R_15967337_SNP [dm3] 2R_20079832_SNP [dm6]	G	A	2.211e^-4	0.717	INTERGENIC
X	20612692	X_20612692_SNP [dm3] X_20741665_SNP [dm6]	T	C	2.214e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	10917671	3L_10917671_SNP [dm3] 3L_10924571_SNP [dm6]	G	T	2.218e^-4	0.717	INTERGENIC
2R	19599895	2R_19599895_SNP [dm3] 2R_23712372_SNP [dm6]	A	G	2.224e^-4	0.717	INTERGENIC
2R	2049645	2R_2049645_SNP [dm3] 2R_6162140_SNP [dm6]	T	C	2.226e^-4	0.717	UPSTREAM tRNA:N5:42Ab & 2 others DOWNSTREAM tRNA:R2:42Ac & 1 other INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7466905	2R_7466905_SNP [dm3] 2R_11579400_SNP [dm6]	T	C	2.230e^-4	0.717	UTR_3_PRIME tou DOWNSTREAM tou
X	12217611	X_12217611_SNP [dm3] X_12323578_SNP [dm6]	T	G	2.230e^-4	0.717	INTRON Ten-a
2L	12249019	2L_12249019_SNP [dm3] 2L_12249019_SNP [dm6]	C	T	2.233e^-4	0.717	INTRON aret
2R	12708244	2R_12708244_SNP [dm3] 2R_16820739_SNP [dm6]	C	T	2.235e^-4	0.717	INTERGENIC
2R	9764517	2R_9764517_SNP [dm3] 2R_13877012_SNP [dm6]	C	T	2.235e^-4	0.717	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9546112	2L_9546112_SNP [dm3] 2L_9546112_SNP [dm6]	A	G	2.238e^-4	0.717	SYNONYMOUS_CODING CG13114	TF binding site mE1_TFBS_chinmo
2R	9677870	2R_9677870_SNP [dm3] 2R_13790365_SNP [dm6]	C	G	2.241e^-4	0.717	INTERGENIC
2R	2036973	2R_2036973_SNP [dm3] 2R_6149468_SNP [dm6]	C	G	2.251e^-4	0.717	INTRON EcR
2R	17285529	2R_17285529_SNP [dm3] 2R_21398024_SNP [dm6]	A	G	2.259e^-4	0.717	INTRON Sdc
2R	15400930	2R_15400930_SNP [dm3] 2R_19513425_SNP [dm6]	A	T	2.265e^-4	0.717	SYNONYMOUS_CODING Ir56d
3L	2191747	3L_2191747_SNP [dm3] 3L_2191747_SNP [dm6]	T	A	2.267e^-4	0.717	UPSTREAM CG5707 INTRON CG5707
2R	16389132	2R_16389132_SNP [dm3] 2R_20501627_SNP [dm6]	C	T	2.267e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs
3L	14498992	3L_14498992_SNP [dm3] 3L_14505892_SNP [dm6]	C	A	2.267e^-4	0.717	INTRON bbg
2L	12898049	2L_12898049_SNP [dm3] 2L_12898049_SNP [dm6]	T	C	2.268e^-4	0.717	INTERGENIC
2R	7295705	2R_7295705_SNP [dm3] 2R_11408200_SNP [dm6]	C	T	2.274e^-4	0.717	DOWNSTREAM CG30026 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9006660	3R_9006660_SNP [dm3] 3R_13180938_SNP [dm6]	T	C	2.278e^-4	0.717	UPSTREAM CG8138 INTERGENIC
2R	13544507	2R_13544507_SNP [dm3] 2R_17657002_SNP [dm6]	C	A	2.280e^-4	0.717	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25483333	3R_25483333_SNP [dm3] 3R_29657611_SNP [dm6]	G	C	2.283e^-4	0.717	INTRON Dop1R2
3R	12767648	3R_12767648_SNP [dm3] 3R_16941926_SNP [dm6]	A	T	2.299e^-4	0.717	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8895845	2R_8895845_SNP [dm3] 2R_13008340_SNP [dm6]	A	T	2.314e^-4	0.717	DOWNSTREAM Su_z_2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5491934	2L_5491934_SNP [dm3] 2L_5491934_SNP [dm6]	G	T	2.316e^-4	0.717	INTERGENIC
2L	12688898	2L_12688898_SNP [dm3] 2L_12688898_SNP [dm6]	G	T	2.317e^-4	0.717	INTERGENIC
2L	4365663	2L_4365663_SNP [dm3] 2L_4365663_SNP [dm6]	C	T	2.319e^-4	0.717	INTRON Traf4	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	12708382	2R_12708382_SNP [dm3] 2R_16820877_SNP [dm6]	T	C	2.324e^-4	0.717	INTERGENIC
2R	2059639	2R_2059639_SNP [dm3] 2R_6172134_SNP [dm6]	C	G	2.325e^-4	0.717	UPSTREAM tRNA:K2:42Ad DOWNSTREAM tRNA:CR30316 INTERGENIC	regulatory region REDfly_CRMs
3L	17837357	3L_17837357_SNP [dm3] 3L_17844257_SNP [dm6]	A	G	2.326e^-4	0.717	SYNONYMOUS_CODING MED19 UPSTREAM CG5567
2L	20029875	2L_20029875_SNP [dm3] 2L_20029875_SNP [dm6]	A	T	2.327e^-4	0.717	INTRON sNPF
3L	18377141	3L_18377141_SNP [dm3] 3L_18384041_SNP [dm6]	A	T	2.329e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_inv
3L	6456092	3L_6456092_SNP [dm3] 3L_6462992_SNP [dm6]	A	T	2.331e^-4	0.717	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
2L	14627182	2L_14627182_SNP [dm3] 2L_14627182_SNP [dm6]	G	A	2.333e^-4	0.717	INTRON osp	TF binding site BDTNP1_TFBS_dl
2R	19603402	2R_19603402_SNP [dm3] 2R_23715879_SNP [dm6]	C	T	2.338e^-4	0.717	INTRON Sesn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14466691	3R_14466691_SNP [dm3] 3R_18640969_SNP [dm6]	G	A	2.339e^-4	0.717	UTR_5_PRIME CG14301 INTRON qin	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	18212151	3R_18212151_SNP [dm3] 3R_22386429_SNP [dm6]	T	C	2.352e^-4	0.717	UTR_3_PRIME CG43343 DOWNSTREAM CG5379
3R	4723928	3R_4723928_SNP [dm3] 3R_8898206_SNP [dm6]	G	T	2.353e^-4	0.717	INTRON pyd	TF binding site BDTNP1_TFBS_dl
2R	16391183	2R_16391183_SNP [dm3] 2R_20503678_SNP [dm6]	A	T	2.363e^-4	0.717	SYNONYMOUS_CODING Obp57c UPSTREAM Obp57b	regulatory region REDfly_CRMs
2L	12770278	2L_12770278_SNP [dm3] 2L_12770278_SNP [dm6]	C	G	2.370e^-4	0.717	INTERGENIC
2R	8942589	2R_8942589_SNP [dm3] 2R_13055084_SNP [dm6]	C	T	2.375e^-4	0.717	DOWNSTREAM Drl-2 INTERGENIC
2L	12089901	2L_12089901_SNP [dm3] 2L_12089901_SNP [dm6]	A	C	2.376e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17209290	2R_17209290_SNP [dm3] 2R_21321785_SNP [dm6]	A	T	2.384e^-4	0.717	INTRON CG30394
2L	15959547	2L_15959547_SNP [dm3] 2L_15959547_SNP [dm6]	A	T	2.384e^-4	0.717	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
2R	8607328	2R_8607328_SNP [dm3] 2R_12719823_SNP [dm6]	T	G	2.386e^-4	0.717	INTRON CG42663
2R	9743941	2R_9743941_SNP [dm3] 2R_13856436_SNP [dm6]	A	T	2.387e^-4	0.717	SYNONYMOUS_CODING tum UPSTREAM CG6553 DOWNSTREAM CR44367	TF binding site mE1_TFBS_cad
3R	1961613	3R_1961613_SNP [dm3] 3R_6135891_SNP [dm6]	A	C	2.395e^-4	0.717	INTERGENIC
3R	11105996	3R_11105996_DEL [dm3] 3R_15280274_DEL [dm6]	TATGC	T	2.395e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21886575	2L_21886575_SNP [dm3] 2L_21886575_SNP [dm6]	A	T	2.399e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9379101	2L_9379101_SNP [dm3] 2L_9379101_SNP [dm6]	G	C	2.405e^-4	0.717	INTRON Shawl
X	8606201	X_8606201_SNP [dm3] X_8712168_SNP [dm6]	T	C	2.408e^-4	0.717	DOWNSTREAM CG2004 INTRON Hexo2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	1247893	2L_1247893_SNP [dm3] 2L_1247893_SNP [dm6]	A	T	2.412e^-4	0.717	INTERGENIC
X	21456361	X_21456361_SNP [dm3] X_21585334_SNP [dm6]	C	A	2.414e^-4	0.717	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
2L	12721435	2L_12721435_SNP [dm3] 2L_12721435_SNP [dm6]	A	G	2.418e^-4	0.717	UPSTREAM MRP INTRON CG5792 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	7100249	2L_7100249_SNP [dm3] 2L_7100249_SNP [dm6]	A	T	2.422e^-4	0.717	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	12799618	2L_12799618_SNP [dm3] 2L_12799618_SNP [dm6]	A	G	2.429e^-4	0.717	INTERGENIC
2R	15852331	2R_15852331_SNP [dm3] 2R_19964826_SNP [dm6]	A	G	2.429e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12901026	2L_12901026_SNP [dm3] 2L_12901026_SNP [dm6]	A	G	2.431e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7939352	2L_7939352_SNP [dm3] 2L_7939352_SNP [dm6]	C	G	2.444e^-4	0.717	INTRON Snoo
2L	16402754	2L_16402754_SNP [dm3] 2L_16402754_SNP [dm6]	A	C	2.445e^-4	0.717	INTRON CG5888
2R	11814453	2R_11814453_SNP [dm3] 2R_15926948_SNP [dm6]	A	G	2.445e^-4	0.717	NON_SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2R	5907305	2R_5907305_SNP [dm3] 2R_10019800_SNP [dm6]	A	C	2.453e^-4	0.717	INTRON Pka-R2
X	2797262	X_2797262_SNP [dm3] X_2903229_SNP [dm6]	G	C	2.460e^-4	0.717	INTRON kirre
2R	5253138	2R_5253138_SNP [dm3] 2R_9365633_SNP [dm6]	G	A	2.461e^-4	0.717	INTRON CG13954	TF binding site mE1_TFBS_chinmo
X	16408705	X_16408705_SNP [dm3] X_16514672_SNP [dm6]	T	A	2.462e^-4	0.717	INTRON para
2R	8310907	2R_8310907_INS [dm3] 2R_12423402_INS [dm6]	A	ATT	2.464e^-4	0.717	UPSTREAM CG8834 & 1 other INTRON CG8520	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14210684	3L_14210684_SNP [dm3] 3L_14217584_SNP [dm6]	C	A	2.480e^-4	0.717	UPSTREAM CG7768 INTRON nuf
3R	16282186	3R_16282186_SNP [dm3] 3R_20456464_SNP [dm6]	A	C	2.482e^-4	0.717	INTRON Gfrl
2L	14627203	2L_14627203_SNP [dm3] 2L_14627203_SNP [dm6]	A	G	2.486e^-4	0.717	INTRON osp	TF binding site BDTNP1_TFBS_dl
3L	11059940	3L_11059940_SNP [dm3] 3L_11066840_SNP [dm6]	A	C	2.490e^-4	0.717	NON_SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
2R	13540793	2R_13540793_SNP [dm3] 2R_17653288_SNP [dm6]	T	C	2.497e^-4	0.717	INTRON CCHa1-R
3L	3359144	3L_3359144_SNP [dm3] 3L_3359144_SNP [dm6]	A	T	2.497e^-4	0.717	NON_SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26870458	3R_26870458_SNP [dm3] 3R_31044736_SNP [dm6]	A	G	2.499e^-4	0.717	SYNONYMOUS_CODING CG33920 INTRON CanA1
2R	11854066	2R_11854066_SNP [dm3] 2R_15966561_SNP [dm6]	T	A	2.500e^-4	0.717	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14212019	2R_14212019_SNP [dm3] 2R_18324514_SNP [dm6]	A	G	2.508e^-4	0.717	INTRON sbb
3L	21968126	3L_21968126_SNP [dm3] 3L_21975026_SNP [dm6]	T	A	2.511e^-4	0.717	INTRON CG7470
2R	2078593	2R_2078593_SNP [dm3] 2R_6191088_SNP [dm6]	G	A	2.526e^-4	0.717	UPSTREAM tRNA:N5:42Ae DOWNSTREAM tRNA:N5:42Ad INTRON Ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	12896055	2L_12896055_SNP [dm3] 2L_12896055_SNP [dm6]	C	T	2.529e^-4	0.717	INTERGENIC
X	22136800	X_22136800_SNP [dm3] X_22734964_SNP [dm6]	T	A	2.533e^-4	0.717	INTRON CR44997
X	20612452	X_20612452_SNP [dm3] X_20741425_SNP [dm6]	C	A	2.538e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	13034928	3L_13034928_SNP [dm3] 3L_13041828_SNP [dm6]	C	T	2.538e^-4	0.717	UTR_5_PRIME RpS4 UPSTREAM snoRNA:Psi28S-3327a DOWNSTREAM SRm160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	4262489	2L_4262489_SNP [dm3] 2L_4262489_SNP [dm6]	T	A	2.545e^-4	0.717	INTERGENIC
2L	17254154	2L_17254154_SNP [dm3] 2L_17254154_SNP [dm6]	G	A	2.547e^-4	0.717	INTRON beat-IIIc
2L	14447082	2L_14447082_INS [dm3] 2L_14447082_INS [dm6]	C	CGA	2.550e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14447085	2L_14447085_SNP [dm3] 2L_14447085_SNP [dm6]	T	A	2.550e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14447089	2L_14447089_SNP [dm3] 2L_14447089_SNP [dm6]	T	G	2.550e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13540910	2R_13540910_SNP [dm3] 2R_17653405_SNP [dm6]	A	G	2.552e^-4	0.717	INTRON CCHa1-R
2L	12892575	2L_12892575_SNP [dm3] 2L_12892575_SNP [dm6]	G	A	2.554e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1845772	3L_1845772_SNP [dm3] 3L_1845772_SNP [dm6]	G	A	2.555e^-4	0.717	INTERGENIC
3L	12092841	3L_12092841_SNP [dm3] 3L_12099741_SNP [dm6]	A	T	2.560e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16310450	3L_16310450_SNP [dm3] 3L_16317350_SNP [dm6]	T	C	2.569e^-4	0.717	UPSTREAM Nplp3 INTERGENIC
3L	12755797	3L_12755797_SNP [dm3] 3L_12762697_SNP [dm6]	C	T	2.570e^-4	0.717	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA
3L	3244461	3L_3244461_INS [dm3] 3L_3244461_INS [dm6]	T	TT	2.575e^-4	0.717	UPSTREAM CR45424 & 1 other INTERGENIC
2L	2807125	2L_2807125_SNP [dm3] 2L_2807125_SNP [dm6]	A	G	2.576e^-4	0.717	INTRON daw	TF binding site BDTNP1_TFBS_dl
3R	6246632	3R_6246632_SNP [dm3] 3R_10420910_SNP [dm6]	C	A	2.577e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15679626	X_15679626_SNP [dm3] X_15785593_SNP [dm6]	T	C	2.581e^-4	0.717	UPSTREAM mRpS30 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16765740	2R_16765740_SNP [dm3] 2R_20878235_SNP [dm6]	T	C	2.597e^-4	0.717	NON_SYNONYMOUS_CODING Ipk1 INTRON Ipk1
3R	19450616	3R_19450616_SNP [dm3] 3R_23624894_SNP [dm6]	C	T	2.597e^-4	0.717	INTRON CG31145
2L	12721985	2L_12721985_SNP [dm3] 2L_12721985_SNP [dm6]	G	A	2.604e^-4	0.717	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	9909234	3L_9909234_SNP [dm3] 3L_9916134_SNP [dm6]	T	G	2.616e^-4	0.717	INTRON CG34356	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	12898121	2L_12898121_SNP [dm3] 2L_12898121_SNP [dm6]	A	C	2.617e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
2L	221416	2L_221416_SNP [dm3] 2L_221416_SNP [dm6]	C	G	2.618e^-4	0.717	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	2464217	2R_2464217_SNP [dm3] 2R_6576712_SNP [dm6]	A	G	2.619e^-4	0.717	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18272781	X_18272781_SNP [dm3] X_18378748_SNP [dm6]	A	G	2.622e^-4	0.717	SYNONYMOUS_CODING por DOWNSTREAM CrebB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19226740	3R_19226740_SNP [dm3] 3R_23401018_SNP [dm6]	T	C	2.629e^-4	0.717	INTERGENIC
2R	19599999	2R_19599999_SNP [dm3] 2R_23712476_SNP [dm6]	T	C	2.634e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2R	8187909	2R_8187909_SNP [dm3] 2R_12300404_SNP [dm6]	C	T	2.638e^-4	0.717	SYNONYMOUS_CODING CG8850 UTR_3_PRIME CG42700	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19083863	2L_19083863_SNP [dm3] 2L_19083863_SNP [dm6]	C	T	2.640e^-4	0.717	UPSTREAM Lim3 INTRON Lim3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6889458	3L_6889458_SNP [dm3] 3L_6896358_SNP [dm6]	T	C	2.641e^-4	0.717	INTERGENIC
2L	6552116	2L_6552116_SNP [dm3] 2L_6552116_SNP [dm6]	T	G	2.645e^-4	0.717	EXON CR44776
2R	19603112	2R_19603112_SNP [dm3] 2R_23715589_SNP [dm6]	T	C	2.649e^-4	0.717	INTRON Sesn	TF binding site BDTNP1_TFBS_dl
X	4676521	X_4676521_SNP [dm3] X_4782488_SNP [dm6]	G	T	2.651e^-4	0.717	NON_SYNONYMOUS_CODING CG15471
2L	1147966	2L_1147966_SNP [dm3] 2L_1147966_SNP [dm6]	A	G	2.656e^-4	0.717	SYNONYMOUS_CODING CG4749 DOWNSTREAM MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9835115	X_9835115_SNP [dm3] X_9941082_SNP [dm6]	G	A	2.658e^-4	0.717	INTERGENIC
2R	5355245	2R_5355245_SNP [dm3] 2R_9467740_SNP [dm6]	T	G	2.661e^-4	0.717	INTRON Camta
2L	14447101	2L_14447101_INS [dm3] 2L_14447101_INS [dm6]	A	AGAAAATTGCTCTGAGATAC...	2.675e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14447113	2L_14447113_SNP [dm3] 2L_14447113_SNP [dm6]	T	G	2.675e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14447118	2L_14447118_INS [dm3] 2L_14447118_INS [dm6]	A	ACTGTACTTA	2.675e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13034120	2R_13034120_SNP [dm3] 2R_17146615_SNP [dm6]	G	A	2.677e^-4	0.717	DOWNSTREAM snoRNA:U3:54Ab INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	13269783	2L_13269783_SNP [dm3] 2L_13269783_SNP [dm6]	C	T	2.679e^-4	0.717	INTRON CG44085
X	4203848	X_4203848_SNP [dm3] X_4309815_SNP [dm6]	C	A	2.679e^-4	0.717	INTERGENIC
2L	3907478	2L_3907478_SNP [dm3] 2L_3907478_SNP [dm6]	T	A	2.681e^-4	0.717	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12804316	2L_12804316_SNP [dm3] 2L_12804316_SNP [dm6]	G	A	2.690e^-4	0.717	INTERGENIC
X	20011567	X_20011567_SNP [dm3] X_20117534_SNP [dm6]	C	A	2.696e^-4	0.717	INTERGENIC
3L	10567346	3L_10567346_SNP [dm3] 3L_10574246_SNP [dm6]	T	A	2.697e^-4	0.717	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna
2L	3583048	2L_3583048_SNP [dm3] 2L_3583048_SNP [dm6]	C	T	2.707e^-4	0.717	INTERGENIC
3R	3208747	3R_3208747_SNP [dm3] 3R_7383025_SNP [dm6]	C	G	2.714e^-4	0.717	INTERGENIC
2R	2057100	2R_2057100_SNP [dm3] 2R_6169595_SNP [dm6]	T	C	2.723e^-4	0.717	UPSTREAM tRNA:R2:42Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13353696	3L_13353696_SNP [dm3] 3L_13360596_SNP [dm6]	T	A	2.724e^-4	0.717	INTERGENIC
2L	19870697	2L_19870697_SNP [dm3] 2L_19870697_SNP [dm6]	T	C	2.734e^-4	0.717	INTRON sick	TF binding site mE1_TFBS_inv
2L	16320608	2L_16320608_SNP [dm3] 2L_16320608_SNP [dm6]	G	T	2.735e^-4	0.717	INTRON cact	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3244476	3L_3244476_SNP [dm3] 3L_3244476_SNP [dm6]	G	C	2.746e^-4	0.717	UPSTREAM CR45424 & 1 other INTERGENIC
2R	8437137	2R_8437137_SNP [dm3] 2R_12549632_SNP [dm6]	T	C	2.751e^-4	0.717	INTRON fra
2R	9166153	2R_9166153_SNP [dm3] 2R_13278648_SNP [dm6]	A	G	2.752e^-4	0.717	INTRON Dh31-R
3R	18476228	3R_18476228_DEL [dm3] 3R_22650506_DEL [dm6]	TT	T	2.753e^-4	0.717	INTRON CG45058
3R	9006684	3R_9006684_SNP [dm3] 3R_13180962_SNP [dm6]	A	T	2.755e^-4	0.717	UPSTREAM CG8138 INTERGENIC
2R	17209296	2R_17209296_SNP [dm3] 2R_21321791_SNP [dm6]	C	A	2.756e^-4	0.717	INTRON CG30394
X	18036912	X_18036912_INS [dm3] X_18142879_INS [dm6]	A	ATTTTTAGTAA...	2.766e^-4	0.717	INTERGENIC
3R	843811	3R_843811_SNP [dm3] 3R_5018089_SNP [dm6]	T	A	2.772e^-4	0.717	INTRON CR45585	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14522316	X_14522316_SNP [dm3] X_14628283_SNP [dm6]	T	C	2.774e^-4	0.717	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	2180196	2L_2180196_SNP [dm3] 2L_2180196_SNP [dm6]	T	C	2.775e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6841926	3L_6841926_SNP [dm3] 3L_6848826_SNP [dm6]	C	T	2.777e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12781693	2L_12781693_SNP [dm3] 2L_12781693_SNP [dm6]	G	A	2.781e^-4	0.717	INTERGENIC
X	4333779	X_4333779_SNP [dm3] X_4439746_SNP [dm6]	A	T	2.783e^-4	0.717	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	9744607	2L_9744607_SNP [dm3] 2L_9744607_SNP [dm6]	T	G	2.785e^-4	0.717	INTRON Nckx30C
X	16626261	X_16626261_SNP [dm3] X_16732228_SNP [dm6]	C	T	2.787e^-4	0.717	SYNONYMOUS_CODING TwdlX INTRON CG9634
3R	15453712	3R_15453712_DEL [dm3] 3R_19627990_DEL [dm6]	TTC	T	2.787e^-4	0.717	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
2L	3698472	2L_3698472_SNP [dm3] 2L_3698472_SNP [dm6]	C	A	2.789e^-4	0.717	UTR_3_PRIME CG10031 UPSTREAM CG3604 & 1 other
X	13398327	X_13398327_SNP [dm3] X_13504294_SNP [dm6]	A	T	2.797e^-4	0.717	INTRON Neto	TF binding site mE1_TFBS_chinmo
2L	12901084	2L_12901084_DEL [dm3] 2L_12901084_DEL [dm6]	ACGG	A	2.800e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
2R	2046498	2R_2046498_SNP [dm3] 2R_6158993_SNP [dm6]	T	C	2.806e^-4	0.717	INTRON EcR EXON CR43904	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	13926481	2L_13926481_SNP [dm3] 2L_13926481_SNP [dm6]	G	A	2.815e^-4	0.717	INTRON Ance-3
3R	16282666	3R_16282666_SNP [dm3] 3R_20456944_SNP [dm6]	G	T	2.819e^-4	0.717	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	13674259	2R_13674259_SNP [dm3] 2R_17786754_SNP [dm6]	T	C	2.824e^-4	0.717	INTRON aft	TF binding site mE1_TFBS_sens
3L	12224953	3L_12224953_SNP [dm3] 3L_12231853_SNP [dm6]	G	A	2.826e^-4	0.717	INTRON app
3R	12767213	3R_12767213_SNP [dm3] 3R_16941491_SNP [dm6]	T	C	2.829e^-4	0.717	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	18730110	X_18730110_SNP [dm3] X_18836077_SNP [dm6]	T	G	2.829e^-4	0.717	INTRON Pvf1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6841650	3L_6841650_SNP [dm3] 3L_6848550_SNP [dm6]	A	T	2.836e^-4	0.717	INTERGENIC
3L	6130239	3L_6130239_SNP [dm3] 3L_6137139_SNP [dm6]	C	T	2.837e^-4	0.717	UPSTREAM Lcp65Af DOWNSTREAM Lcp65Ae INTERGENIC
2L	14447070	2L_14447070_SNP [dm3] 2L_14447070_SNP [dm6]	G	T	2.854e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2049037	2R_2049037_SNP [dm3] 2R_6161532_SNP [dm6]	A	T	2.854e^-4	0.717	UPSTREAM tRNA:R2:42Ac & 2 others DOWNSTREAM tRNA:N5:42Ac INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8949746	3L_8949746_SNP [dm3] 3L_8956646_SNP [dm6]	T	A	2.855e^-4	0.717	UPSTREAM mRpL12 DOWNSTREAM GNBP3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17182549	2R_17182549_SNP [dm3] 2R_21295044_SNP [dm6]	T	G	2.856e^-4	0.717	SYNONYMOUS_CODING CG9752 UPSTREAM CG42672 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	8085580	3L_8085580_SNP [dm3] 3L_8092480_SNP [dm6]	A	C	2.860e^-4	0.717	UPSTREAM CG7565 INTRON Ect4
X	14808147	X_14808147_SNP [dm3] X_14914114_SNP [dm6]	A	C	2.860e^-4	0.717	UPSTREAM CG12398 INTRON Flo2
3L	9195418	3L_9195418_SNP [dm3] 3L_9202318_SNP [dm6]	C	G	2.883e^-4	0.717	DOWNSTREAM Slc45-1 INTERGENIC
3R	17692876	3R_17692876_SNP [dm3] 3R_21867154_SNP [dm6]	C	T	2.883e^-4	0.717	SYNONYMOUS_CODING CG6569 UTR_3_PRIME CG6569 UPSTREAM Cby DOWNSTREAM lsn
3L	12056988	3L_12056988_SNP [dm3] 3L_12063888_SNP [dm6]	A	G	2.885e^-4	0.717	INTRON rols
2R	10051285	2R_10051285_SNP [dm3] 2R_14163780_SNP [dm6]	C	G	2.887e^-4	0.717	SYNONYMOUS_CODING Tango7 DOWNSTREAM O-fut1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	4675224	X_4675224_INS [dm3] X_4781191_INS [dm6]	C	CC	2.894e^-4	0.717	INTERGENIC
X	16164640	X_16164640_SNP [dm3] X_16270607_SNP [dm6]	A	G	2.904e^-4	0.717	UPSTREAM Mfe2 INTRON kat80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18653664	3R_18653664_SNP [dm3] 3R_22827942_SNP [dm6]	C	T	2.905e^-4	0.717	UPSTREAM CR44350 INTERGENIC
X	20155434	X_20155434_SNP [dm3] X_20284407_SNP [dm6]	A	G	2.917e^-4	0.717	INTERGENIC
3R	2673094	3R_2673094_SNP [dm3] 3R_6847372_SNP [dm6]	T	G	2.917e^-4	0.717	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	2080139	2R_2080139_SNP [dm3] 2R_6192634_SNP [dm6]	T	C	2.919e^-4	0.717	INTRON Ptr	TF binding site BDTNP1_TFBS_dl
2R	6796333	2R_6796333_SNP [dm3] 2R_10908828_SNP [dm6]	C	G	2.921e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11487100	3L_11487100_SNP [dm3] 3L_11494000_SNP [dm6]	A	G	2.923e^-4	0.717	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4872128	2L_4872128_SNP [dm3] 2L_4872128_SNP [dm6]	C	T	2.925e^-4	0.717	SYNONYMOUS_CODING pog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	2064690	2R_2064690_SNP [dm3] 2R_6177185_SNP [dm6]	T	A	2.926e^-4	0.717	DOWNSTREAM Cyp6w1 INTERGENIC	regulatory region REDfly_CRMs
3R	25138807	3R_25138807_SNP [dm3] 3R_29313085_SNP [dm6]	A	G	2.927e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	12798968	2L_12798968_INS [dm3] 2L_12798968_INS [dm6]	A	AGTATTGTGAAATA...	2.927e^-4	0.717	INTERGENIC
3R	26647722	3R_26647722_SNP [dm3] 3R_30822000_SNP [dm6]	G	A	2.927e^-4	0.717	UPSTREAM cindr INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8300883	2R_8300883_SNP [dm3] 2R_12413378_SNP [dm6]	G	A	2.936e^-4	0.717	UPSTREAM Cpr49Ah INTERGENIC
3R	17157952	3R_17157952_SNP [dm3] 3R_21332230_SNP [dm6]	G	T	2.936e^-4	0.717	INTRON CG16791	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12225235	3L_12225235_INS [dm3] 3L_12232135_INS [dm6]	C	CCTCT	2.944e^-4	0.717	INTRON app
3L	9616563	3L_9616563_SNP [dm3] 3L_9623463_SNP [dm6]	C	A	2.945e^-4	0.717	UTR_3_PRIME LanB2 UPSTREAM CG3335	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19153752	3R_19153752_SNP [dm3] 3R_23328030_SNP [dm6]	G	T	2.946e^-4	0.717	INTRON pnt
2R	2050749	2R_2050749_SNP [dm3] 2R_6163244_SNP [dm6]	A	G	2.951e^-4	0.717	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Ab & 1 other INTRON EcR	transposable element FlyBase
2R	17511458	2R_17511458_SNP [dm3] 2R_21623953_SNP [dm6]	G	C	2.954e^-4	0.717	SYNONYMOUS_CODING PTP-ER	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	12808066	X_12808066_INS [dm3] X_12914033_INS [dm6]	C	CC	2.955e^-4	0.717	UPSTREAM CR45626 INTERGENIC
2L	10800734	2L_10800734_DEL [dm3] 2L_10800734_DEL [dm6]	GATG	G	2.958e^-4	0.717	SPLICE_SITE_REGION CG31869 UTR_5_PRIME CG31869 DOWNSTREAM CR44581
3L	1845741	3L_1845741_SNP [dm3] 3L_1845741_SNP [dm6]	A	G	2.960e^-4	0.717	INTERGENIC
2L	2180212	2L_2180212_SNP [dm3] 2L_2180212_SNP [dm6]	A	T	2.962e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12718335	2L_12718335_SNP [dm3] 2L_12718335_SNP [dm6]	A	G	2.962e^-4	0.717	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
X	17102099	X_17102099_SNP [dm3] X_17208066_SNP [dm6]	A	T	2.964e^-4	0.717	UPSTREAM CG32563 DOWNSTREAM CG32564 INTERGENIC
2R	17209028	2R_17209028_SNP [dm3] 2R_21321523_SNP [dm6]	T	A	2.965e^-4	0.717	SYNONYMOUS_CODING CG30394
2R	17209061	2R_17209061_SNP [dm3] 2R_21321556_SNP [dm6]	A	T	2.965e^-4	0.717	SYNONYMOUS_CODING CG30394
2R	17209277	2R_17209277_SNP [dm3] 2R_21321772_SNP [dm6]	A	T	2.965e^-4	0.717	INTRON CG30394
2L	14003238	2L_14003238_SNP [dm3] 2L_14003238_SNP [dm6]	T	G	2.965e^-4	0.717	INTERGENIC
2R	18372866	2R_18372866_SNP [dm3] 2R_22485361_SNP [dm6]	T	C	2.967e^-4	0.717	SYNONYMOUS_CODING CG4554
2L	19057684	2L_19057684_SNP [dm3] 2L_19057684_SNP [dm6]	C	A	2.967e^-4	0.717	UTR_3_PRIME CG10492	TF binding site mE1_TFBS_cad
2L	9747414	2L_9747414_SNP [dm3] 2L_9747414_SNP [dm6]	C	T	2.970e^-4	0.717	UPSTREAM Nckx30C DOWNSTREAM Cyp4e3 INTERGENIC
2L	16295955	2L_16295955_SNP [dm3] 2L_16295955_SNP [dm6]	C	T	2.971e^-4	0.717	UTR_3_PRIME Cyp303a1 DOWNSTREAM heix
X	2830192	X_2830192_SNP [dm3] X_2936159_SNP [dm6]	A	G	2.980e^-4	0.717	UPSTREAM CG3598 DOWNSTREAM CG3592 INTRON kirre
3R	24605213	3R_24605213_SNP [dm3] 3R_28779491_SNP [dm6]	G	T	2.981e^-4	0.717	INTERGENIC
3L	13268992	3L_13268992_SNP [dm3] 3L_13275892_SNP [dm6]	C	T	2.982e^-4	0.717	SYNONYMOUS_CODING caps	TF binding site mE1_TFBS_chinmo
3R	23180856	3R_23180856_SNP [dm3] 3R_27355134_SNP [dm6]	G	C	2.986e^-4	0.717	INTRON CG42534
3L	3244474	3L_3244474_SNP [dm3] 3L_3244474_SNP [dm6]	G	C	2.987e^-4	0.717	UPSTREAM CR45424 & 1 other INTERGENIC
2R	9183401	2R_9183401_SNP [dm3] 2R_13295896_SNP [dm6]	T	G	2.990e^-4	0.717	UTR_5_PRIME Dh31-R
2L	12897784	2L_12897784_SNP [dm3] 2L_12897784_SNP [dm6]	G	A	2.994e^-4	0.717	INTERGENIC
2L	12897786	2L_12897786_SNP [dm3] 2L_12897786_SNP [dm6]	G	A	2.994e^-4	0.717	INTERGENIC
2R	2056925	2R_2056925_SNP [dm3] 2R_6169420_SNP [dm6]	T	A	2.994e^-4	0.717	UPSTREAM tRNA:R2:42Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18640202	3R_18640202_SNP [dm3] 3R_22814480_SNP [dm6]	C	A	2.997e^-4	0.717	DOWNSTREAM CG13840 INTERGENIC
3L	18038324	3L_18038324_SNP [dm3] 3L_18045224_SNP [dm6]	T	G	2.999e^-4	0.717	INTRON Eip75B
3L	8215264	3L_8215264_SNP [dm3] 3L_8222164_SNP [dm6]	T	C	3.004e^-4	0.717	UTR_5_PRIME CG13678
3R	12179802	3R_12179802_SNP [dm3] 3R_16354080_SNP [dm6]	C	A	3.005e^-4	0.717	INTRON CG10311
2R	2067256	2R_2067256_SNP [dm3] 2R_6179751_SNP [dm6]	T	A	3.008e^-4	0.717	NON_SYNONYMOUS_CODING CG8343	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8485688	3R_8485688_SNP [dm3] 3R_12659966_SNP [dm6]	C	T	3.013e^-4	0.717	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
2R	9158203	2R_9158203_SNP [dm3] 2R_13270698_SNP [dm6]	T	G	3.014e^-4	0.717	INTRON Dh31-R
3R	2780810	3R_2780810_SNP [dm3] 3R_6955088_SNP [dm6]	C	T	3.021e^-4	0.718	INTRON Antp
X	14808806	X_14808806_SNP [dm3] X_14914773_SNP [dm6]	C	T	3.031e^-4	0.719	UPSTREAM CG12398 INTRON Flo2
2L	2866254	2L_2866254_SNP [dm3] 2L_2866254_SNP [dm6]	T	G	3.032e^-4	0.719	INTRON CG2991
3R	22997867	3R_22997867_SNP [dm3] 3R_27172145_SNP [dm6]	A	T	3.038e^-4	0.719	UTR_3_PRIME Ser	regulatory region REDfly_CRMs
3L	9606367	3L_9606367_SNP [dm3] 3L_9613267_SNP [dm6]	C	G	3.041e^-4	0.719	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo
3R	12897186	3R_12897186_SNP [dm3] 3R_17071464_SNP [dm6]	T	A	3.050e^-4	0.719	SYNONYMOUS_CODING Ns1
2L	9087253	2L_9087253_SNP [dm3] 2L_9087253_SNP [dm6]	G	A	3.052e^-4	0.719	SYNONYMOUS_CODING Toll-4
2L	4229349	2L_4229349_SNP [dm3] 2L_4229349_SNP [dm6]	A	C	3.058e^-4	0.719	DOWNSTREAM RpL40 EXON CR44608
2L	9087250	2L_9087250_SNP [dm3] 2L_9087250_SNP [dm6]	A	C	3.061e^-4	0.719	SYNONYMOUS_CODING Toll-4
3L	11314124	3L_11314124_SNP [dm3] 3L_11321024_SNP [dm6]	G	C	3.065e^-4	0.719	SYNONYMOUS_CODING CG6168
X	12991191	X_12991191_SNP [dm3] X_13097158_SNP [dm6]	G	A	3.068e^-4	0.719	INTRON CG43313	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	14825198	X_14825198_SNP [dm3] X_14931165_SNP [dm6]	G	A	3.073e^-4	0.719	SYNONYMOUS_CODING Flo2	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11445331	3L_11445331_SNP [dm3] 3L_11452231_SNP [dm6]	T	C	3.075e^-4	0.719	INTERGENIC
3R	20257494	3R_20257494_SNP [dm3] 3R_24431772_SNP [dm6]	T	G	3.080e^-4	0.719	INTRON nAChRalpha1
X	4434730	X_4434730_SNP [dm3] X_4540697_SNP [dm6]	T	C	3.081e^-4	0.719	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	15852315	2R_15852315_SNP [dm3] 2R_19964810_SNP [dm6]	G	A	3.087e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16282080	3R_16282080_SNP [dm3] 3R_20456358_SNP [dm6]	A	C	3.087e^-4	0.719	INTRON Gfrl
2R	1843786	2R_1843786_SNP [dm3] 2R_5956281_SNP [dm6]	C	G	3.090e^-4	0.719	INTERGENIC	transposable element FlyBase
3R	15453705	3R_15453705_DEL [dm3] 3R_19627983_DEL [dm6]	ATCCT	A	3.107e^-4	0.722	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
2R	8310903	2R_8310903_MNP [dm3] 2R_12423398_MNP [dm6]	CAA	ATT	3.112e^-4	0.722	UPSTREAM CG8834 & 1 other INTRON CG8520	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	6444577	X_6444577_INS [dm3] X_6550544_INS [dm6]	A	AAAGAGT	3.138e^-4	0.724	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
2R	9764217	2R_9764217_SNP [dm3] 2R_13876712_SNP [dm6]	A	G	3.144e^-4	0.724	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8621201	X_8621201_SNP [dm3] X_8727168_SNP [dm6]	A	G	3.148e^-4	0.724	INTERGENIC
2L	14627196	2L_14627196_SNP [dm3] 2L_14627196_SNP [dm6]	C	T	3.152e^-4	0.724	INTRON osp	TF binding site BDTNP1_TFBS_dl
3L	2811037	3L_2811037_SNP [dm3] 3L_2811037_SNP [dm6]	A	T	3.155e^-4	0.724	INTRON CG43444
2R	19244916	2R_19244916_SNP [dm3] 2R_23357393_SNP [dm6]	A	C	3.160e^-4	0.724	UTR_5_PRIME CG3500 UPSTREAM CG9875 & 1 other DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	12722184	2L_12722184_SNP [dm3] 2L_12722184_SNP [dm6]	A	G	3.165e^-4	0.724	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	11849506	3R_11849506_SNP [dm3] 3R_16023784_SNP [dm6]	T	G	3.168e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	6892636	2R_6892636_SNP [dm3] 2R_11005131_SNP [dm6]	C	T	3.177e^-4	0.724	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18540427	2L_18540427_INS [dm3] 2L_18540427_INS [dm6]	C	CCA	3.186e^-4	0.724	INTRON Pde11
3L	23054305	3L_23054305_SNP [dm3] 3L_23061205_SNP [dm6]	G	T	3.188e^-4	0.724	INTERGENIC
2R	2034912	2R_2034912_SNP [dm3] 2R_6147407_SNP [dm6]	C	G	3.189e^-4	0.724	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	4527152	2R_4527152_SNP [dm3] 2R_8639647_SNP [dm6]	T	G	3.194e^-4	0.724	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3L	21266297	3L_21266297_SNP [dm3] 3L_21273197_SNP [dm6]	G	A	3.194e^-4	0.724	SYNONYMOUS_CODING AcCoAS	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6873259	2R_6873259_INS [dm3] 2R_10985754_INS [dm6]	C	CGGCC	3.199e^-4	0.724	INTRON luna
2R	13580661	2R_13580661_SNP [dm3] 2R_17693156_SNP [dm6]	A	G	3.201e^-4	0.724	INTRON swi2
2L	9748943	2L_9748943_SNP [dm3] 2L_9748943_SNP [dm6]	T	G	3.201e^-4	0.724	SYNONYMOUS_CODING Cyp4e3
3R	23319168	3R_23319168_SNP [dm3] 3R_27493446_SNP [dm6]	C	T	3.201e^-4	0.724	INTERGENIC
3R	20257510	3R_20257510_SNP [dm3] 3R_24431788_SNP [dm6]	A	T	3.204e^-4	0.724	INTRON nAChRalpha1
3R	2792702	3R_2792702_SNP [dm3] 3R_6966980_SNP [dm6]	T	G	3.206e^-4	0.724	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21341137	X_21341137_SNP [dm3] X_21470110_SNP [dm6]	A	G	3.208e^-4	0.724	INTERGENIC
2R	6763300	2R_6763300_SNP [dm3] 2R_10875795_SNP [dm6]	A	T	3.209e^-4	0.724	UTR_5_PRIME nclb UPSTREAM CG30016	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
2R	12392261	2R_12392261_SNP [dm3] 2R_16504756_SNP [dm6]	G	A	3.216e^-4	0.724	INTRON Sema-2a
3L	18288212	3L_18288212_DEL [dm3] 3L_18295112_DEL [dm6]	GG	G	3.219e^-4	0.724	UPSTREAM CG5103 INTRON CR43306	TF binding site mE1_TFBS_Kr
2R	16463850	2R_16463850_SNP [dm3] 2R_20576345_SNP [dm6]	C	G	3.230e^-4	0.724	INTRON qsm
2L	11047668	2L_11047668_SNP [dm3] 2L_11047668_SNP [dm6]	T	A	3.232e^-4	0.724	INTRON Samuel
X	14817561	X_14817561_SNP [dm3] X_14923528_SNP [dm6]	G	T	3.235e^-4	0.724	UPSTREAM CG9503 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	18992771	2L_18992771_SNP [dm3] 2L_18992771_SNP [dm6]	T	A	3.245e^-4	0.724	DOWNSTREAM CG10650 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
X	2776016	X_2776016_SNP [dm3] X_2881983_SNP [dm6]	C	T	3.249e^-4	0.724	DOWNSTREAM CG14418 INTRON kirre	TF binding site BDTNP1_TFBS_dl
3R	18729455	3R_18729455_SNP [dm3] 3R_22903733_SNP [dm6]	G	T	3.252e^-4	0.724	INTRON klg	TF binding site mE1_TFBS_chinmo
2L	4722850	2L_4722850_SNP [dm3] 2L_4722850_SNP [dm6]	T	A	3.252e^-4	0.724	DOWNSTREAM CG34351 INTERGENIC
3R	19330355	3R_19330355_SNP [dm3] 3R_23504633_SNP [dm6]	C	T	3.256e^-4	0.724	INTERGENIC
2R	18235346	2R_18235346_SNP [dm3] 2R_22347841_SNP [dm6]	G	T	3.256e^-4	0.724	UPSTREAM CG11298 INTRON Liprin-gamma
3R	18656070	3R_18656070_SNP [dm3] 3R_22830348_SNP [dm6]	C	T	3.260e^-4	0.724	INTERGENIC
3L	5389944	3L_5389944_SNP [dm3] 3L_5396844_SNP [dm6]	A	G	3.261e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	18653456	3R_18653456_SNP [dm3] 3R_22827734_SNP [dm6]	A	G	3.267e^-4	0.724	UPSTREAM CR44350 INTERGENIC
X	16836532	X_16836532_SNP [dm3] X_16942499_SNP [dm6]	C	T	3.269e^-4	0.724	SYNONYMOUS_CODING CG13001 UPSTREAM RhoGAP15B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6873955	2R_6873955_SNP [dm3] 2R_10986450_SNP [dm6]	C	T	3.274e^-4	0.724	INTRON luna
2L	6493442	2L_6493442_SNP [dm3] 2L_6493442_SNP [dm6]	C	T	3.283e^-4	0.724	SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3031635	2R_3031635_SNP [dm3] 2R_7144130_SNP [dm6]	G	T	3.284e^-4	0.724	INTERGENIC
3R	26760984	3R_26760984_SNP [dm3] 3R_30935262_SNP [dm6]	T	C	3.286e^-4	0.724	DOWNSTREAM CG15549 INTERGENIC
3R	13669739	3R_13669739_SNP [dm3] 3R_17844017_SNP [dm6]	T	A	3.287e^-4	0.724	INTRON tinc
3R	27076666	3R_27076666_SNP [dm3] 3R_31250944_SNP [dm6]	A	G	3.287e^-4	0.724	INTRON qless	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9783231	3L_9783231_SNP [dm3] 3L_9790131_SNP [dm6]	T	A	3.291e^-4	0.724	DOWNSTREAM Zasp67 INTRON Zasp67	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	21900017	2L_21900017_SNP [dm3] 2L_21900017_SNP [dm6]	A	C	3.292e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	9615870	3L_9615870_INS [dm3] 3L_9622770_INS [dm6]	C	CTC	3.303e^-4	0.725	INTRON LanB2	TF binding site mE1_TFBS_cad
2L	3982338	2L_3982338_SNP [dm3] 2L_3982338_SNP [dm6]	C	T	3.310e^-4	0.725	INTRON fred
3L	5060161	3L_5060161_SNP [dm3] 3L_5060161_SNP [dm6]	T	C	3.315e^-4	0.725	INTRON Con
2R	15400840	2R_15400840_SNP [dm3] 2R_19513335_SNP [dm6]	G	A	3.321e^-4	0.725	SYNONYMOUS_CODING Ir56d
3L	1950715	3L_1950715_SNP [dm3] 3L_1950715_SNP [dm6]	G	T	3.324e^-4	0.725	DOWNSTREAM Cnb INTRON mv	TF binding site mE1_TFBS_cad
2R	5355279	2R_5355279_SNP [dm3] 2R_9467774_SNP [dm6]	A	G	3.325e^-4	0.725	INTRON Camta
X	3862196	X_3862196_SNP [dm3] X_3968163_SNP [dm6]	C	T	3.326e^-4	0.725	SYNONYMOUS_CODING CG6428 UPSTREAM CR45481 DOWNSTREAM CG6414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	13850148	3R_13850148_SNP [dm3] 3R_18024426_SNP [dm6]	C	G	3.331e^-4	0.725	DOWNSTREAM CG7785 INTRON CG7794	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22543892	3R_22543892_SNP [dm3] 3R_26718170_SNP [dm6]	C	A	3.332e^-4	0.725	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18036873	X_18036873_SNP [dm3] X_18142840_SNP [dm6]	T	A	3.340e^-4	0.725	INTERGENIC
2L	11675043	2L_11675043_SNP [dm3] 2L_11675043_SNP [dm6]	G	T	3.345e^-4	0.725	INTERGENIC
2R	9792734	2R_9792734_SNP [dm3] 2R_13905229_SNP [dm6]	A	G	3.353e^-4	0.725	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
X	14808188	X_14808188_SNP [dm3] X_14914155_SNP [dm6]	A	T	3.359e^-4	0.725	UPSTREAM CG12398 INTRON Flo2
3R	25094417	3R_25094417_SNP [dm3] 3R_29268695_SNP [dm6]	A	C	3.362e^-4	0.725	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6227764	2L_6227764_SNP [dm3] 2L_6227764_SNP [dm6]	A	C	3.366e^-4	0.725	DOWNSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18654304	3R_18654304_SNP [dm3] 3R_22828582_SNP [dm6]	A	G	3.367e^-4	0.725	INTERGENIC
X	13348029	X_13348029_SNP [dm3] X_13453996_SNP [dm6]	T	A	3.375e^-4	0.725	INTRON Neto
X	18036915	X_18036915_INS [dm3] X_18142882_INS [dm6]	A	AGTTCCAAAGATTTTATTGG...	3.376e^-4	0.725	INTERGENIC
2R	9257520	2R_9257520_SNP [dm3] 2R_13370015_SNP [dm6]	C	T	3.376e^-4	0.725	INTERGENIC
X	14813212	X_14813212_INS [dm3] X_14919179_INS [dm6]	A	AC	3.379e^-4	0.725	UPSTREAM Eo DOWNSTREAM CG9503 INTRON Flo2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	14551404	3L_14551404_SNP [dm3] 3L_14558304_SNP [dm6]	T	C	3.382e^-4	0.725	INTERGENIC
3R	8485643	3R_8485643_SNP [dm3] 3R_12659921_SNP [dm6]	T	A	3.386e^-4	0.725	INTRON CG6225	TF binding site mE1_TFBS_cad
X	22133718	X_22133718_SNP [dm3] X_22731882_SNP [dm6]	A	C	3.394e^-4	0.725	INTRON CR44997
2L	6380353	2L_6380353_SNP [dm3] 2L_6380353_SNP [dm6]	A	T	3.395e^-4	0.725	UPSTREAM CG9507 INTRON CG42368
3L	12864905	3L_12864905_SNP [dm3] 3L_12871805_SNP [dm6]	A	G	3.395e^-4	0.725	INTERGENIC
2R	2048544	2R_2048544_SNP [dm3] 2R_6161039_SNP [dm6]	C	T	3.405e^-4	0.726	UPSTREAM tRNA:R2:42Ac DOWNSTREAM tRNA:N5:42Ac INTRON EcR	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	12773674	2L_12773674_SNP [dm3] 2L_12773674_SNP [dm6]	G	T	3.406e^-4	0.726	INTERGENIC
3R	20637292	3R_20637292_SNP [dm3] 3R_24811570_SNP [dm6]	A	G	3.420e^-4	0.727	INTRON CG5807
3L	16748666	3L_16748666_SNP [dm3] 3L_16755566_SNP [dm6]	C	A	3.425e^-4	0.727	INTRON CG42852
3L	11484548	3L_11484548_INS [dm3] 3L_11491448_INS [dm6]	T	TCT	3.427e^-4	0.727	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26342304	3R_26342304_SNP [dm3] 3R_30516582_SNP [dm6]	T	A	3.432e^-4	0.727	NON_SYNONYMOUS_CODING CG9698 DOWNSTREAM jdp
X	2218147	X_2218147_SNP [dm3] X_2324114_SNP [dm6]	G	A	3.433e^-4	0.727	DOWNSTREAM CG14050 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12885123	2L_12885123_SNP [dm3] 2L_12885123_SNP [dm6]	T	C	3.440e^-4	0.727	INTERGENIC
3L	14498958	3L_14498958_SNP [dm3] 3L_14505858_SNP [dm6]	A	T	3.440e^-4	0.727	INTRON bbg
3L	5088675	3L_5088675_SNP [dm3] 3L_5088675_SNP [dm6]	A	G	3.446e^-4	0.728	INTERGENIC
X	4236963	X_4236963_SNP [dm3] X_4342930_SNP [dm6]	T	A	3.463e^-4	0.73	INTRON norpA
3L	6157963	3L_6157963_SNP [dm3] 3L_6164863_SNP [dm6]	A	T	3.464e^-4	0.73	DOWNSTREAM CG10289 & 1 other INTERGENIC
2L	3607297	2L_3607297_SNP [dm3] 2L_3607297_SNP [dm6]	G	A	3.467e^-4	0.73	UPSTREAM odd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	6363857	3R_6363857_SNP [dm3] 3R_10538135_SNP [dm6]	A	C	3.476e^-4	0.731	INTRON hth	enhancer mE1_CBP_Enhancers
3L	5639800	3L_5639800_SNP [dm3] 3L_5646700_SNP [dm6]	A	G	3.481e^-4	0.731	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2766309	3R_2766309_SNP [dm3] 3R_6940587_SNP [dm6]	G	T	3.494e^-4	0.732	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2385842	X_2385842_SNP [dm3] X_2491809_SNP [dm6]	T	G	3.494e^-4	0.732	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
X	15680830	X_15680830_SNP [dm3] X_15786797_SNP [dm6]	T	C	3.498e^-4	0.732	SYNONYMOUS_CODING mRpS30	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25594793	3R_25594793_SNP [dm3] 3R_29769071_SNP [dm6]	T	G	3.505e^-4	0.733	INTRON kay
3R	22543955	3R_22543955_SNP [dm3] 3R_26718233_SNP [dm6]	A	C	3.510e^-4	0.733	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2880017	3L_2880017_SNP [dm3] 3L_2880017_SNP [dm6]	C	T	3.515e^-4	0.733	UPSTREAM CG43444 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7665754	2L_7665754_SNP [dm3] 2L_7665754_SNP [dm6]	A	G	3.517e^-4	0.733	UPSTREAM Myo28B1 INTRON Slob
3L	9248608	3L_9248608_SNP [dm3] 3L_9255508_SNP [dm6]	A	G	3.527e^-4	0.734	INTRON GluRIB
3R	8485642	3R_8485642_SNP [dm3] 3R_12659920_SNP [dm6]	C	A	3.535e^-4	0.734	INTRON CG6225	TF binding site mE1_TFBS_cad
2R	2054246	2R_2054246_SNP [dm3] 2R_6166741_SNP [dm6]	G	C	3.542e^-4	0.734	DOWNSTREAM tRNA:K2:42Aa & 1 other INTRON EcR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1270598	2L_1270598_SNP [dm3] 2L_1270598_SNP [dm6]	A	G	3.545e^-4	0.734	INTRON robo3
2L	21828113	2L_21828113_SNP [dm3] 2L_21828113_SNP [dm6]	T	G	3.545e^-4	0.734	UPSTREAM tsh INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	23308672	3R_23308672_SNP [dm3] 3R_27482950_SNP [dm6]	C	T	3.550e^-4	0.734	DOWNSTREAM Cyp6a18 INTERGENIC
3L	12092881	3L_12092881_SNP [dm3] 3L_12099781_SNP [dm6]	G	A	3.551e^-4	0.734	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11328706	2L_11328706_SNP [dm3] 2L_11328706_SNP [dm6]	G	C	3.555e^-4	0.734	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	15266244	3R_15266244_SNP [dm3] 3R_19440522_SNP [dm6]	T	C	3.584e^-4	0.737	INTRON CG31221
2L	9875541	2L_9875541_SNP [dm3] 2L_9875541_SNP [dm6]	T	C	3.589e^-4	0.737	INTRON nAChRalpha6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	6747225	2R_6747225_SNP [dm3] 2R_10859720_SNP [dm6]	G	A	3.593e^-4	0.737	INTRON CG30015 EXON CR44302	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	5500410	2L_5500410_SNP [dm3] 2L_5500410_SNP [dm6]	A	C	3.597e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2805800	2L_2805800_SNP [dm3] 2L_2805800_SNP [dm6]	A	C	3.598e^-4	0.737	INTRON daw
3L	9619513	3L_9619513_SNP [dm3] 3L_9626413_SNP [dm6]	C	G	3.603e^-4	0.737	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18520503	3R_18520503_SNP [dm3] 3R_22694781_SNP [dm6]	G	T	3.607e^-4	0.737	UPSTREAM cd DOWNSTREAM Nup133 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9748942	2L_9748942_SNP [dm3] 2L_9748942_SNP [dm6]	A	C	3.614e^-4	0.737	NON_SYNONYMOUS_CODING Cyp4e3
3L	10984848	3L_10984848_SNP [dm3] 3L_10991748_SNP [dm6]	T	C	3.616e^-4	0.737	INTRON klu	TF binding site BDTNP1_TFBS_dl
2L	12768873	2L_12768873_SNP [dm3] 2L_12768873_SNP [dm6]	T	C	3.622e^-4	0.737	INTERGENIC
2L	9363096	2L_9363096_SNP [dm3] 2L_9363096_SNP [dm6]	G	A	3.623e^-4	0.737	INTERGENIC
2R	18373215	2R_18373215_SNP [dm3] 2R_22485710_SNP [dm6]	C	G	3.632e^-4	0.737	NON_SYNONYMOUS_CODING CG4554
2R	17189972	2R_17189972_SNP [dm3] 2R_21302467_SNP [dm6]	G	T	3.633e^-4	0.737	SYNONYMOUS_CODING CG42672 INTRON CG42672
2L	13355350	2L_13355350_SNP [dm3] 2L_13355350_SNP [dm6]	T	A	3.636e^-4	0.737	UPSTREAM CG9395 INTERGENIC
3R	22772639	3R_22772639_SNP [dm3] 3R_26946917_SNP [dm6]	G	A	3.638e^-4	0.737	SYNONYMOUS_CODING CG14252 UPSTREAM CG18472 DOWNSTREAM tRNA:CR31071 & 1 other	TF binding site mE1_TFBS_sens
2L	12779232	2L_12779232_SNP [dm3] 2L_12779232_SNP [dm6]	A	C	3.640e^-4	0.737	INTERGENIC
3R	7295555	3R_7295555_SNP [dm3] 3R_11469833_SNP [dm6]	A	G	3.642e^-4	0.737	INTERGENIC
2R	19573576	2R_19573576_DEL [dm3] 2R_23686053_DEL [dm6]	TAC	T	3.644e^-4	0.737	UPSTREAM l_2_efl INTRON St3
2R	1871122	2R_1871122_SNP [dm3] 2R_5983617_SNP [dm6]	A	T	3.645e^-4	0.737	INTRON Src42A
2L	9715463	2L_9715463_DEL [dm3] 2L_9715463_DEL [dm6]	TCTGCATT	T	3.649e^-4	0.737	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C	TF binding site BDTNP1_TFBS_dl
3R	23840570	3R_23840570_SNP [dm3] 3R_28014848_SNP [dm6]	A	T	3.651e^-4	0.737	INTERGENIC
2R	6892600	2R_6892600_SNP [dm3] 2R_11005095_SNP [dm6]	A	G	3.653e^-4	0.737	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9076013	2R_9076013_SNP [dm3] 2R_13188508_SNP [dm6]	A	G	3.660e^-4	0.737	INTRON seq & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9164877	2R_9164877_SNP [dm3] 2R_13277372_SNP [dm6]	C	T	3.666e^-4	0.737	INTRON Dh31-R
2R	7140166	2R_7140166_SNP [dm3] 2R_11252661_SNP [dm6]	T	C	3.666e^-4	0.737	DOWNSTREAM Or47a INTRON Cpr47Ea
3L	9729316	3L_9729316_SNP [dm3] 3L_9736216_SNP [dm6]	A	T	3.680e^-4	0.739	INTRON CG42268
2L	5465742	2L_5465742_SNP [dm3] 2L_5465742_SNP [dm6]	A	T	3.684e^-4	0.739	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2R	16883813	2R_16883813_SNP [dm3] 2R_20996308_SNP [dm6]	C	T	3.688e^-4	0.739	UTR_5_PRIME CG10543 UPSTREAM CG10543 DOWNSTREAM Prosalpha3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	19178907	X_19178907_SNP [dm3] X_19284874_SNP [dm6]	C	A	3.694e^-4	0.739	UPSTREAM CG8034 INTRON CG8034	TF binding site mE1_TFBS_chinmo
2R	15986559	2R_15986559_SNP [dm3] 2R_20099054_SNP [dm6]	T	A	3.701e^-4	0.739	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9333455	3L_9333455_SNP [dm3] 3L_9340355_SNP [dm6]	G	T	3.710e^-4	0.739	UPSTREAM PGRP-LC INTRON PGRP-LC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20296510	3R_20296510_SNP [dm3] 3R_24470788_SNP [dm6]	A	C	3.716e^-4	0.739	DOWNSTREAM CG31128 INTERGENIC
3L	12864854	3L_12864854_SNP [dm3] 3L_12871754_SNP [dm6]	C	T	3.721e^-4	0.739	INTERGENIC
3R	25144616	3R_25144616_DEL [dm3] 3R_29318894_DEL [dm6]	CAATAAACCTC...	C	3.722e^-4	0.739	INTRON Cnx99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25144649	3R_25144649_SNP [dm3] 3R_29318927_SNP [dm6]	G	A	3.722e^-4	0.739	INTRON Cnx99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14536753	3R_14536753_SNP [dm3] 3R_18711031_SNP [dm6]	G	A	3.724e^-4	0.739	INTRON VAChT & 1 other
3R	1785474	3R_1785474_SNP [dm3] 3R_5959752_SNP [dm6]	G	C	3.734e^-4	0.739	UPSTREAM CG34113 DOWNSTREAM CG11373 INTERGENIC
3L	8647655	3L_8647655_SNP [dm3] 3L_8654555_SNP [dm6]	A	G	3.735e^-4	0.739	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19151444	3R_19151444_INS [dm3] 3R_23325722_INS [dm6]	G	GG	3.741e^-4	0.739	INTRON pnt
3L	12864523	3L_12864523_SNP [dm3] 3L_12871423_SNP [dm6]	C	T	3.743e^-4	0.739	INTERGENIC
2L	4788143	2L_4788143_SNP [dm3] 2L_4788143_SNP [dm6]	C	T	3.752e^-4	0.739	INTRON CG15630
2L	18540451	2L_18540451_SNP [dm3] 2L_18540451_SNP [dm6]	G	A	3.752e^-4	0.739	INTRON Pde11
3R	25395702	3R_25395702_SNP [dm3] 3R_29569980_SNP [dm6]	C	T	3.761e^-4	0.739	INTERGENIC
2L	2341861	2L_2341861_SNP [dm3] 2L_2341861_SNP [dm6]	T	C	3.762e^-4	0.739	INTRON CG9967 & 1 other
3R	18041223	3R_18041223_SNP [dm3] 3R_22215501_SNP [dm6]	C	A	3.772e^-4	0.739	INTRON SKIP & 1 other	TF binding site mE1_TFBS_inv
2L	12773075	2L_12773075_SNP [dm3] 2L_12773075_SNP [dm6]	G	A	3.778e^-4	0.739	INTERGENIC
2L	1165566	2L_1165566_SNP [dm3] 2L_1165566_SNP [dm6]	G	A	3.779e^-4	0.739	SYNONYMOUS_CODING IntS14 UPSTREAM CG14341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14821513	3R_14821513_SNP [dm3] 3R_18995791_SNP [dm6]	C	T	3.786e^-4	0.739	INTRON gukh	TF binding site BDTNP1_TFBS_da
2L	20419095	2L_20419095_SNP [dm3] 2L_20419095_SNP [dm6]	A	T	3.789e^-4	0.739	UPSTREAM snoRNA:Psi18S-525d & 5 others DOWNSTREAM snoRNA:Psi18S-525a & 3 others INTRON Arpc2 EXON snoRNA:Psi18S-640b	TF binding site mE1_TFBS_zfh1
3R	17080190	3R_17080190_SNP [dm3] 3R_21254468_SNP [dm6]	G	A	3.792e^-4	0.739	INTRON ETHR
X	20011750	X_20011750_SNP [dm3] X_20117717_SNP [dm6]	T	C	3.794e^-4	0.739	INTERGENIC
2L	924055	2L_924055_SNP [dm3] 2L_924055_SNP [dm6]	G	T	3.801e^-4	0.739	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3L	9615144	3L_9615144_SNP [dm3] 3L_9622044_SNP [dm6]	A	G	3.802e^-4	0.739	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
2L	17552142	2L_17552142_SNP [dm3] 2L_17552142_SNP [dm6]	T	G	3.803e^-4	0.739	INTERGENIC
2L	9396486	2L_9396486_SNP [dm3] 2L_9396486_SNP [dm6]	G	T	3.807e^-4	0.739	DOWNSTREAM CG4438 INTRON Shawl
3L	13353764	3L_13353764_SNP [dm3] 3L_13360664_SNP [dm6]	A	T	3.816e^-4	0.739	INTERGENIC
2R	9762591	2R_9762591_SNP [dm3] 2R_13875086_SNP [dm6]	C	A	3.819e^-4	0.739	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	12888504	2L_12888504_SNP [dm3] 2L_12888504_SNP [dm6]	G	T	3.819e^-4	0.739	INTERGENIC
2R	9264384	2R_9264384_SNP [dm3] 2R_13376879_SNP [dm6]	A	G	3.820e^-4	0.739	SYNONYMOUS_CODING CG10814	TF binding site mE1_TFBS_chinmo
2L	12901093	2L_12901093_SNP [dm3] 2L_12901093_SNP [dm6]	G	A	3.830e^-4	0.739	INTERGENIC	TF binding site mE1_TFBS_cad
3R	13700113	3R_13700113_SNP [dm3] 3R_17874391_SNP [dm6]	T	C	3.839e^-4	0.739	UTR_3_PRIME Rim DOWNSTREAM Rim
3R	20103623	3R_20103623_SNP [dm3] 3R_24277901_SNP [dm6]	C	G	3.840e^-4	0.739	SYNONYMOUS_CODING Orct	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18036874	X_18036874_SNP [dm3] X_18142841_SNP [dm6]	A	C	3.840e^-4	0.739	INTERGENIC
3L	16822262	3L_16822262_SNP [dm3] 3L_16829162_SNP [dm6]	C	T	3.842e^-4	0.739	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9330797	3L_9330797_SNP [dm3] 3L_9337697_SNP [dm6]	A	G	3.846e^-4	0.739	INTRON PGRP-LA
2R	13283741	2R_13283741_SNP [dm3] 2R_17396236_SNP [dm6]	A	G	3.847e^-4	0.739	INTRON Sip1
3L	7400192	3L_7400192_SNP [dm3] 3L_7407092_SNP [dm6]	A	G	3.850e^-4	0.739	DOWNSTREAM pncr015:3L INTERGENIC
2R	2054081	2R_2054081_SNP [dm3] 2R_6166576_SNP [dm6]	A	T	3.852e^-4	0.739	DOWNSTREAM tRNA:K2:42Aa & 1 other INTRON EcR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25138893	3R_25138893_SNP [dm3] 3R_29313171_SNP [dm6]	G	C	3.853e^-4	0.739	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	4237082	X_4237082_SNP [dm3] X_4343049_SNP [dm6]	T	A	3.853e^-4	0.739	INTRON norpA
3R	15295878	3R_15295878_SNP [dm3] 3R_19470156_SNP [dm6]	G	T	3.860e^-4	0.739	INTRON Dys
2L	12890589	2L_12890589_DEL [dm3] 2L_12890589_DEL [dm6]	CA	C	3.864e^-4	0.739	INTERGENIC
2L	7940343	2L_7940343_SNP [dm3] 2L_7940343_SNP [dm6]	A	G	3.869e^-4	0.74	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
2L	12798728	2L_12798728_SNP [dm3] 2L_12798728_SNP [dm6]	T	A	3.879e^-4	0.741	INTERGENIC
3R	4944560	3R_4944560_SNP [dm3] 3R_9118838_SNP [dm6]	T	C	3.888e^-4	0.742	INTRON pum
2L	7391531	2L_7391531_SNP [dm3] 2L_7391531_SNP [dm6]	C	A	3.902e^-4	0.744	DOWNSTREAM gudu INTRON CG5160
2R	8938569	2R_8938569_SNP [dm3] 2R_13051064_SNP [dm6]	G	C	3.913e^-4	0.745	INTERGENIC
2R	9763266	2R_9763266_SNP [dm3] 2R_13875761_SNP [dm6]	G	A	3.917e^-4	0.745	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3R	14378908	3R_14378908_SNP [dm3] 3R_18553186_SNP [dm6]	G	A	3.921e^-4	0.745	INTERGENIC
3L	11485368	3L_11485368_INS [dm3] 3L_11492268_INS [dm6]	T	TACAT	3.931e^-4	0.746	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6031268	3R_6031268_SNP [dm3] 3R_10205546_SNP [dm6]	A	G	3.932e^-4	0.746	INTRON Syn & 1 other
3L	14498961	3L_14498961_SNP [dm3] 3L_14505861_SNP [dm6]	T	C	3.940e^-4	0.746	INTRON bbg
3R	5095702	3R_5095702_SNP [dm3] 3R_9269980_SNP [dm6]	G	T	3.941e^-4	0.746	NON_SYNONYMOUS_CODING Vps16A
X	7553082	X_7553082_SNP [dm3] X_7659049_SNP [dm6]	C	T	3.956e^-4	0.747	INTRON ct	TF binding site mE1_TFBS_inv
X	14808826	X_14808826_SNP [dm3] X_14914793_SNP [dm6]	G	C	3.966e^-4	0.747	UPSTREAM CG12398 INTRON Flo2
2L	1165576	2L_1165576_SNP [dm3] 2L_1165576_SNP [dm6]	C	T	3.983e^-4	0.747	SYNONYMOUS_CODING IntS14 UPSTREAM CG14341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9188852	2L_9188852_SNP [dm3] 2L_9188852_SNP [dm6]	A	T	3.983e^-4	0.747	INTRON tai
2L	12799004	2L_12799004_SNP [dm3] 2L_12799004_SNP [dm6]	G	T	3.987e^-4	0.747	INTERGENIC
2L	9745399	2L_9745399_SNP [dm3] 2L_9745399_SNP [dm6]	A	C	3.992e^-4	0.747	INTRON Nckx30C
X	16408925	X_16408925_SNP [dm3] X_16514892_SNP [dm6]	T	C	3.994e^-4	0.747	INTRON para
2R	2073642	2R_2073642_SNP [dm3] 2R_6186137_SNP [dm6]	C	T	3.995e^-4	0.747	INTRON Ptr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15276794	2L_15276794_SNP [dm3] 2L_15276794_SNP [dm6]	A	G	4.002e^-4	0.747	INTERGENIC

By genomic position
Variant impact
Gene name

lsm_Lifespan phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results