DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.622e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.07788
In_3R_K	0.05017

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2582 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	12797662	2L_12797662_SNP [dm3] 2L_12797662_SNP [dm6]	C	G	2.676e^-7	0.248	INTERGENIC
2L	12797679	2L_12797679_SNP [dm3] 2L_12797679_SNP [dm6]	G	T	4.799e^-7	0.248	INTERGENIC
2L	12797294	2L_12797294_SNP [dm3] 2L_12797294_SNP [dm6]	G	A	6.642e^-7	0.248	INTERGENIC
2L	12799611	2L_12799611_SNP [dm3] 2L_12799611_SNP [dm6]	T	C	7.198e^-7	0.248	INTERGENIC
2L	12797646	2L_12797646_SNP [dm3] 2L_12797646_SNP [dm6]	C	T	8.057e^-7	0.248	INTERGENIC
X	12994349	X_12994349_SNP [dm3] X_13100316_SNP [dm6]	C	T	1.042e^-6	0.248	INTRON CG43313
3L	11486883	3L_11486883_SNP [dm3] 3L_11493783_SNP [dm6]	C	T	1.313e^-6	0.248	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11486233	3L_11486233_SNP [dm3] 3L_11493133_SNP [dm6]	G	A	1.370e^-6	0.248	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11485602	3L_11485602_SNP [dm3] 3L_11492502_SNP [dm6]	G	T	1.473e^-6	0.248	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12718175	2L_12718175_SNP [dm3] 2L_12718175_SNP [dm6]	T	A	1.520e^-6	0.248	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
2L	12718259	2L_12718259_SNP [dm3] 2L_12718259_SNP [dm6]	G	A	1.536e^-6	0.248	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
3L	11486384	3L_11486384_SNP [dm3] 3L_11493284_SNP [dm6]	T	C	1.701e^-6	0.248	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15400867	2R_15400867_SNP [dm3] 2R_19513362_SNP [dm6]	G	A	1.722e^-6	0.248	SYNONYMOUS_CODING Ir56d
3L	11486774	3L_11486774_SNP [dm3] 3L_11493674_SNP [dm6]	C	T	2.077e^-6	0.277	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12799498	2L_12799498_SNP [dm3] 2L_12799498_SNP [dm6]	C	T	2.214e^-6	0.277	INTERGENIC
2R	7127891	2R_7127891_SNP [dm3] 2R_11240386_SNP [dm6]	G	T	2.437e^-6	0.28	UPSTREAM CG13215 INTERGENIC
3R	2101021	3R_2101021_SNP [dm3] 3R_6275299_SNP [dm6]	T	C	2.915e^-6	0.28	INTERGENIC
2R	12708962	2R_12708962_SNP [dm3] 2R_16821457_SNP [dm6]	G	A	3.070e^-6	0.28	INTERGENIC
2L	12797629	2L_12797629_SNP [dm3] 2L_12797629_SNP [dm6]	G	C	3.118e^-6	0.28	INTERGENIC
3L	11486451	3L_11486451_SNP [dm3] 3L_11493351_SNP [dm6]	C	A	3.227e^-6	0.28	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11486237	3L_11486237_SNP [dm3] 3L_11493137_SNP [dm6]	A	T	3.251e^-6	0.28	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17825112	3R_17825112_INS [dm3] 3R_21999390_INS [dm6]	A	AA	3.454e^-6	0.28	INTRON Eip93F
3L	11485541	3L_11485541_SNP [dm3] 3L_11492441_SNP [dm6]	G	T	3.489e^-6	0.28	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11485392	3L_11485392_SNP [dm3] 3L_11492292_SNP [dm6]	G	C	3.836e^-6	0.28	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12799499	2L_12799499_SNP [dm3] 2L_12799499_SNP [dm6]	C	T	4.372e^-6	0.28	INTERGENIC
2L	6380408	2L_6380408_DEL [dm3] 2L_6380408_DEL [dm6]	CCTT	C	4.376e^-6	0.28	UPSTREAM CG9507 INTRON CG42368
2L	12799708	2L_12799708_SNP [dm3] 2L_12799708_SNP [dm6]	G	A	4.379e^-6	0.28	INTERGENIC
2R	2066410	2R_2066410_SNP [dm3] 2R_6178905_SNP [dm6]	T	C	4.421e^-6	0.28	UPSTREAM tRNA:R2:42Aa & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	2069605	2R_2069605_SNP [dm3] 2R_6182100_SNP [dm6]	G	A	4.480e^-6	0.28	UTR_3_PRIME Ptr UPSTREAM CG11211	regulatory region REDfly_CRMs
2R	12713591	2R_12713591_SNP [dm3] 2R_16826086_SNP [dm6]	C	T	4.506e^-6	0.28	SYNONYMOUS_CODING CG34459 UPSTREAM CG34460	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2438803	2R_2438803_SNP [dm3] 2R_6551298_SNP [dm6]	T	A	4.630e^-6	0.28	INTRON jing
2L	12797735	2L_12797735_SNP [dm3] 2L_12797735_SNP [dm6]	A	T	4.975e^-6	0.292	INTERGENIC
X	4434810	X_4434810_SNP [dm3] X_4540777_SNP [dm6]	T	C	5.195e^-6	0.292	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	6380416	2L_6380416_SNP [dm3] 2L_6380416_SNP [dm6]	A	C	5.292e^-6	0.292	UPSTREAM CG9507 INTRON CG42368
2L	4757791	2L_4757791_DEL [dm3] 2L_4757791_DEL [dm6]	TTTCGCT	T	5.636e^-6	0.299	INTRON CG15630
2L	6565965	2L_6565965_SNP [dm3] 2L_6565965_SNP [dm6]	A	G	6.040e^-6	0.299	SYNONYMOUS_CODING CG13766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	11486441	3L_11486441_DEL [dm3] 3L_11493341_DEL [dm6]	AT	A	6.061e^-6	0.299	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11486235	3L_11486235_SNP [dm3] 3L_11493135_SNP [dm6]	A	G	6.065e^-6	0.299	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11861950	3L_11861950_SNP [dm3] 3L_11868850_SNP [dm6]	C	T	6.565e^-6	0.31	INTRON CG44837
3R	11083549	3R_11083549_DEL [dm3] 3R_15257827_DEL [dm6]	TT	T	6.920e^-6	0.31	DOWNSTREAM eIF-2gamma & 1 other INTERGENIC
X	4434808	X_4434808_SNP [dm3] X_4540775_SNP [dm6]	C	T	6.924e^-6	0.31	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	5339034	2R_5339034_SNP [dm3] 2R_9451529_SNP [dm6]	A	T	6.950e^-6	0.31	INTRON Camta
X	12531590	X_12531590_SNP [dm3] X_12637557_SNP [dm6]	A	G	7.203e^-6	0.314	SYNONYMOUS_CODING Tomosyn	TF binding site BDTNP1_TFBS_dl
2L	15777852	2L_15777852_DEL [dm3] 2L_15777852_DEL [dm6]	ACA	G	7.361e^-6	0.314	UPSTREAM CG43760 INTERGENIC	TF binding site mE1_TFBS_kn
3L	4840590	3L_4840590_SNP [dm3] 3L_4840590_SNP [dm6]	G	C	7.687e^-6	0.32	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	11486366	3L_11486366_SNP [dm3] 3L_11493266_SNP [dm6]	G	A	7.965e^-6	0.325	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12721998	2L_12721998_SNP [dm3] 2L_12721998_SNP [dm6]	A	T	8.463e^-6	0.329	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	2683052	3L_2683052_SNP [dm3] 3L_2683052_SNP [dm6]	G	A	8.569e^-6	0.329	INTRON Fife
3R	18649686	3R_18649686_SNP [dm3] 3R_22823964_SNP [dm6]	C	G	8.602e^-6	0.329	EXON CR44350	TF binding site mE1_TFBS_inv
3L	11486247	3L_11486247_SNP [dm3] 3L_11493147_SNP [dm6]	A	C	8.822e^-6	0.331	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11486181	3L_11486181_SNP [dm3] 3L_11493081_SNP [dm6]	G	T	9.101e^-6	0.335	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12195536	3L_12195536_SNP [dm3] 3L_12202436_SNP [dm6]	C	G	9.575e^-6	0.345	INTRON Adk1
X	4434811	X_4434811_SNP [dm3] X_4540778_SNP [dm6]	G	T	9.800e^-6	0.347	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	15777856	2L_15777856_SNP [dm3] 2L_15777856_SNP [dm6]	A	G	1.002e^-5	0.348	INTERGENIC	TF binding site mE1_TFBS_kn
3L	10562794	3L_10562794_SNP [dm3] 3L_10569694_SNP [dm6]	T	A	1.127e^-5	0.372	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	18650373	3R_18650373_SNP [dm3] 3R_22824651_SNP [dm6]	T	C	1.129e^-5	0.372	EXON CR44350	TF binding site mE1_TFBS_inv
2R	1839314	2R_1839314_SNP [dm3] 2R_5951809_SNP [dm6]	A	T	1.152e^-5	0.372	INTERGENIC	transposable element FlyBase
3R	14416131	3R_14416131_SNP [dm3] 3R_18590409_SNP [dm6]	C	T	1.158e^-5	0.372	SYNONYMOUS_CODING CG7694 UPSTREAM qin DOWNSTREAM fray
3L	4415899	3L_4415899_SNP [dm3] 3L_4415899_SNP [dm6]	G	A	1.171e^-5	0.372	INTRON DOR
2R	18373292	2R_18373292_SNP [dm3] 2R_22485787_SNP [dm6]	G	A	1.230e^-5	0.384	SYNONYMOUS_CODING CG4554
2R	12708964	2R_12708964_SNP [dm3] 2R_16821459_SNP [dm6]	T	A	1.280e^-5	0.388	INTERGENIC
2R	18372857	2R_18372857_SNP [dm3] 2R_22485352_SNP [dm6]	C	A	1.331e^-5	0.388	SYNONYMOUS_CODING CG4554
3L	16744393	3L_16744393_SNP [dm3] 3L_16751293_SNP [dm6]	A	G	1.335e^-5	0.388	INTERGENIC
3R	14416236	3R_14416236_SNP [dm3] 3R_18590514_SNP [dm6]	C	A	1.342e^-5	0.388	UPSTREAM qin INTRON CG7694
2R	1839313	2R_1839313_SNP [dm3] 2R_5951808_SNP [dm6]	T	A	1.346e^-5	0.388	INTERGENIC	transposable element FlyBase
X	4434794	X_4434794_SNP [dm3] X_4540761_SNP [dm6]	C	A	1.427e^-5	0.405	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	12771300	2L_12771300_SNP [dm3] 2L_12771300_SNP [dm6]	C	T	1.491e^-5	0.41	INTERGENIC
2L	4788231	2L_4788231_SNP [dm3] 2L_4788231_SNP [dm6]	G	C	1.502e^-5	0.41	INTRON CG15630
3R	18644308	3R_18644308_SNP [dm3] 3R_22818586_SNP [dm6]	G	A	1.527e^-5	0.41	INTERGENIC
2R	2075854	2R_2075854_SNP [dm3] 2R_6188349_SNP [dm6]	T	A	1.531e^-5	0.41	UTR_3_PRIME Ptr INTRON Ptr	TF binding site mE1_TFBS_inv
X	16409632	X_16409632_SNP [dm3] X_16515599_SNP [dm6]	G	A	1.643e^-5	0.425	INTRON para
2R	18372718	2R_18372718_SNP [dm3] 2R_22485213_SNP [dm6]	A	G	1.675e^-5	0.425	NON_SYNONYMOUS_CODING CG4554
X	13411608	X_13411608_SNP [dm3] X_13517575_SNP [dm6]	T	A	1.715e^-5	0.425	INTRON Neto	TF binding site BDTNP1_TFBS_dl
3R	24747699	3R_24747699_SNP [dm3] 3R_28921977_SNP [dm6]	C	T	1.733e^-5	0.425	UTR_3_PRIME Doa DOWNSTREAM Doa	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12722038	2L_12722038_SNP [dm3] 2L_12722038_SNP [dm6]	A	T	1.742e^-5	0.425	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	13035259	3R_13035259_SNP [dm3] 3R_17209537_SNP [dm6]	A	G	1.752e^-5	0.425	INTERGENIC
3L	4840608	3L_4840608_SNP [dm3] 3L_4840608_SNP [dm6]	C	A	1.768e^-5	0.425	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	12721737	2L_12721737_SNP [dm3] 2L_12721737_SNP [dm6]	C	T	1.769e^-5	0.425	UTR_5_PRIME CG5792 UPSTREAM MRP INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	18235721	2R_18235721_SNP [dm3] 2R_22348216_SNP [dm6]	G	T	1.840e^-5	0.437	UPSTREAM CG11298 INTRON Liprin-gamma
3R	14110152	3R_14110152_SNP [dm3] 3R_18284430_SNP [dm6]	A	T	1.894e^-5	0.444	SYNONYMOUS_CODING CG8064 UPSTREAM CG14312	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9831234	2L_9831234_SNP [dm3] 2L_9831234_SNP [dm6]	C	T	1.935e^-5	0.448	INTRON nAChRalpha6
3R	23562687	3R_23562687_SNP [dm3] 3R_27736965_SNP [dm6]	C	T	1.978e^-5	0.452	START_GAINED Ets98B UTR_5_PRIME Ets98B	TF binding site BDTNP1_TFBS_dl
2R	18373370	2R_18373370_SNP [dm3] 2R_22485865_SNP [dm6]	G	A	2.004e^-5	0.453	SYNONYMOUS_CODING CG4554
2R	14015181	2R_14015181_SNP [dm3] 2R_18127676_SNP [dm6]	T	C	2.032e^-5	0.453	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15777860	2L_15777860_SNP [dm3] 2L_15777860_SNP [dm6]	A	G	2.055e^-5	0.453	INTERGENIC	TF binding site mE1_TFBS_kn
3L	10562766	3L_10562766_SNP [dm3] 3L_10569666_SNP [dm6]	A	G	2.079e^-5	0.453	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	16092795	X_16092795_SNP [dm3] X_16198762_SNP [dm6]	C	G	2.151e^-5	0.464	INTERGENIC
2L	12798114	2L_12798114_SNP [dm3] 2L_12798114_SNP [dm6]	C	A	2.204e^-5	0.464	INTERGENIC
2L	17550377	2L_17550377_SNP [dm3] 2L_17550377_SNP [dm6]	A	G	2.206e^-5	0.464	INTERGENIC
2L	12771287	2L_12771287_SNP [dm3] 2L_12771287_SNP [dm6]	T	A	2.267e^-5	0.464	INTERGENIC
3L	4840591	3L_4840591_DEL [dm3] 3L_4840591_DEL [dm6]	GG	G	2.284e^-5	0.464	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	11486466	3L_11486466_SNP [dm3] 3L_11493366_SNP [dm6]	A	T	2.286e^-5	0.464	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12722116	2L_12722116_SNP [dm3] 2L_12722116_SNP [dm6]	A	T	2.298e^-5	0.464	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	2046945	2R_2046945_SNP [dm3] 2R_6159440_SNP [dm6]	C	A	2.340e^-5	0.465	INTRON EcR EXON CR43904	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18372697	2R_18372697_SNP [dm3] 2R_22485192_SNP [dm6]	A	G	2.359e^-5	0.465	NON_SYNONYMOUS_CODING CG4554
2L	3698438	2L_3698438_SNP [dm3] 2L_3698438_SNP [dm6]	C	A	2.378e^-5	0.465	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
3L	18092024	3L_18092024_SNP [dm3] 3L_18098924_SNP [dm6]	A	T	2.471e^-5	0.478	INTRON CG13698
3L	11486292	3L_11486292_SNP [dm3] 3L_11493192_SNP [dm6]	T	A	2.628e^-5	0.498	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	843775	3R_843775_SNP [dm3] 3R_5018053_SNP [dm6]	C	T	2.691e^-5	0.498	INTRON CR45585	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17405555	2L_17405555_SNP [dm3] 2L_17405555_SNP [dm6]	C	T	2.699e^-5	0.498	SYNONYMOUS_CODING CLIP-190 DOWNSTREAM CLIP-190
3R	18658671	3R_18658671_SNP [dm3] 3R_22832949_SNP [dm6]	C	A	2.759e^-5	0.498	INTERGENIC
2L	12722141	2L_12722141_SNP [dm3] 2L_12722141_SNP [dm6]	C	T	2.799e^-5	0.498	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	15571285	2R_15571285_SNP [dm3] 2R_19683780_SNP [dm6]	A	G	2.818e^-5	0.498	UPSTREAM CG34198 EXON CR44505
2L	12800064	2L_12800064_SNP [dm3] 2L_12800064_SNP [dm6]	A	G	2.851e^-5	0.498	INTERGENIC
3L	11484827	3L_11484827_DEL [dm3] 3L_11491727_DEL [dm6]	GG	G	2.865e^-5	0.498	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11486106	3L_11486106_SNP [dm3] 3L_11493006_SNP [dm6]	T	G	2.865e^-5	0.498	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15400711	2R_15400711_SNP [dm3] 2R_19513206_SNP [dm6]	T	C	2.866e^-5	0.498	SYNONYMOUS_CODING Ir56d
2L	12804680	2L_12804680_SNP [dm3] 2L_12804680_SNP [dm6]	T	G	2.867e^-5	0.498	INTERGENIC
3R	16028663	3R_16028663_SNP [dm3] 3R_20202941_SNP [dm6]	C	T	2.919e^-5	0.499	INTERGENIC
2L	3744312	2L_3744312_SNP [dm3] 2L_3744312_SNP [dm6]	G	A	2.946e^-5	0.499	INTRON CG10019
3R	23448644	3R_23448644_INS [dm3] 3R_27622922_INS [dm6]	T	TT	3.004e^-5	0.499	DOWNSTREAM CG5612 INTRON Tusp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13411553	X_13411553_SNP [dm3] X_13517520_SNP [dm6]	G	T	3.017e^-5	0.499	INTRON Neto	TF binding site BDTNP1_TFBS_dl
3L	12225244	3L_12225244_SNP [dm3] 3L_12232144_SNP [dm6]	C	G	3.082e^-5	0.499	INTRON app
X	15679131	X_15679131_SNP [dm3] X_15785098_SNP [dm6]	T	A	3.096e^-5	0.499	UTR_5_PRIME Paf-AHalpha UPSTREAM mRpS30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
X	13411607	X_13411607_SNP [dm3] X_13517574_SNP [dm6]	T	C	3.102e^-5	0.499	INTRON Neto	TF binding site BDTNP1_TFBS_dl
3R	10300223	3R_10300223_SNP [dm3] 3R_14474501_SNP [dm6]	C	T	3.112e^-5	0.499	INTRON cv-c	TF binding site mE1_TFBS_cad
X	2454366	X_2454366_SNP [dm3] X_2560333_SNP [dm6]	T	A	3.115e^-5	0.499	INTRON Pdfr
3R	16282181	3R_16282181_SNP [dm3] 3R_20456459_SNP [dm6]	T	C	3.181e^-5	0.506	INTRON Gfrl
3L	4155272	3L_4155272_SNP [dm3] 3L_4155272_SNP [dm6]	C	T	3.339e^-5	0.521	SYNONYMOUS_CODING nab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	5003599	X_5003599_SNP [dm3] X_5109566_SNP [dm6]	G	A	3.388e^-5	0.521	INTRON rg & 1 other
2L	12800142	2L_12800142_DEL [dm3] 2L_12800142_DEL [dm6]	GC	G	3.422e^-5	0.521	INTERGENIC
3L	13268744	3L_13268744_SNP [dm3] 3L_13275644_SNP [dm6]	C	G	3.434e^-5	0.521	UTR_5_PRIME caps	TF binding site mE1_TFBS_chinmo
2R	2860248	2R_2860248_SNP [dm3] 2R_6972743_SNP [dm6]	G	C	3.438e^-5	0.521	INTRON Cyp6u1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12795673	2L_12795673_SNP [dm3] 2L_12795673_SNP [dm6]	G	T	3.446e^-5	0.521	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17553232	2R_17553232_SNP [dm3] 2R_21665727_SNP [dm6]	G	A	3.473e^-5	0.521	UTR_3_PRIME CG42362 & 1 other UPSTREAM CG42364 & 1 other
3R	2792620	3R_2792620_SNP [dm3] 3R_6966898_SNP [dm6]	T	G	3.543e^-5	0.523	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	3504566	2R_3504566_SNP [dm3] 2R_7617061_SNP [dm6]	T	A	3.598e^-5	0.523	INTRON CG1358
2L	13353551	2L_13353551_SNP [dm3] 2L_13353551_SNP [dm6]	A	T	3.613e^-5	0.523	INTRON CG9395
X	3141044	X_3141044_SNP [dm3] X_3247011_SNP [dm6]	A	C	3.618e^-5	0.523	INTRON dnc
2R	17428170	2R_17428170_SNP [dm3] 2R_21540665_SNP [dm6]	A	G	3.651e^-5	0.523	UPSTREAM CG30283 INTRON Egfr
X	16955904	X_16955904_SNP [dm3] X_17061871_SNP [dm6]	A	C	3.684e^-5	0.523	INTRON CG45002
3L	18092025	3L_18092025_SNP [dm3] 3L_18098925_SNP [dm6]	T	C	3.704e^-5	0.523	INTRON CG13698
2R	9166500	2R_9166500_INS [dm3] 2R_13278995_INS [dm6]	A	AA	3.711e^-5	0.523	INTRON Dh31-R
2R	14015180	2R_14015180_SNP [dm3] 2R_18127675_SNP [dm6]	C	G	3.744e^-5	0.523	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10562762	3L_10562762_SNP [dm3] 3L_10569662_SNP [dm6]	T	C	3.781e^-5	0.523	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15390178	2L_15390178_SNP [dm3] 2L_15390178_SNP [dm6]	G	A	3.792e^-5	0.523	INTERGENIC
3L	12225127	3L_12225127_SNP [dm3] 3L_12232027_SNP [dm6]	G	A	3.923e^-5	0.533	INTRON app
3R	13642841	3R_13642841_SNP [dm3] 3R_17817119_SNP [dm6]	A	T	3.925e^-5	0.533	INTRON tinc	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12721732	2L_12721732_SNP [dm3] 2L_12721732_SNP [dm6]	G	A	3.986e^-5	0.534	START_GAINED CG5792 UTR_5_PRIME CG5792 UPSTREAM MRP INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	930913	2L_930913_SNP [dm3] 2L_930913_SNP [dm6]	A	C	4.000e^-5	0.534	INTRON CG4341
2R	12146503	2R_12146503_SNP [dm3] 2R_16258998_SNP [dm6]	A	C	4.011e^-5	0.534	INTRON CngA
3L	12194239	3L_12194239_SNP [dm3] 3L_12201139_SNP [dm6]	A	G	4.057e^-5	0.536	INTRON Adk1
2L	9514331	2L_9514331_SNP [dm3] 2L_9514331_SNP [dm6]	C	T	4.208e^-5	0.552	INTRON CG33298
3L	4840543	3L_4840543_SNP [dm3] 3L_4840543_SNP [dm6]	A	T	4.321e^-5	0.562	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6130271	3L_6130271_SNP [dm3] 3L_6137171_SNP [dm6]	A	T	4.370e^-5	0.562	UPSTREAM Lcp65Af DOWNSTREAM Lcp65Ae INTERGENIC
3R	25315428	3R_25315428_SNP [dm3] 3R_29489706_SNP [dm6]	T	G	4.401e^-5	0.562	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9514668	2L_9514668_SNP [dm3] 2L_9514668_SNP [dm6]	A	G	4.408e^-5	0.562	INTRON CG33298
2L	12722004	2L_12722004_SNP [dm3] 2L_12722004_SNP [dm6]	A	C	4.485e^-5	0.565	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	16987913	X_16987913_SNP [dm3] X_17093880_SNP [dm6]	C	T	4.500e^-5	0.565	INTRON CG16700 & 1 other
3R	25139110	3R_25139110_SNP [dm3] 3R_29313388_SNP [dm6]	A	T	4.525e^-5	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9249757	3L_9249757_SNP [dm3] 3L_9256657_SNP [dm6]	G	A	4.572e^-5	0.565	INTRON GluRIB
X	10436856	X_10436856_SNP [dm3] X_10542823_SNP [dm6]	G	T	4.577e^-5	0.565	INTRON spri
2R	7127560	2R_7127560_SNP [dm3] 2R_11240055_SNP [dm6]	G	T	4.633e^-5	0.567	UTR_5_PRIME CG13215	TF binding site mE1_TFBS_sens
2L	12722186	2L_12722186_SNP [dm3] 2L_12722186_SNP [dm6]	T	A	4.678e^-5	0.567	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	6566390	2L_6566390_SNP [dm3] 2L_6566390_SNP [dm6]	T	A	4.684e^-5	0.567	UPSTREAM CG13766 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16282187	3R_16282187_SNP [dm3] 3R_20456465_SNP [dm6]	T	C	4.744e^-5	0.57	INTRON Gfrl
2R	18539053	2R_18539053_SNP [dm3] 2R_22651548_SNP [dm6]	C	T	4.772e^-5	0.57	SYNONYMOUS_CODING nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26210117	3R_26210117_SNP [dm3] 3R_30384395_SNP [dm6]	G	T	4.815e^-5	0.572	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3R	15453734	3R_15453734_SNP [dm3] 3R_19628012_SNP [dm6]	T	C	4.937e^-5	0.582	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
2R	16824113	2R_16824113_SNP [dm3] 2R_20936608_SNP [dm6]	G	A	5.053e^-5	0.584	NON_SYNONYMOUS_CODING Rx
2L	12721903	2L_12721903_SNP [dm3] 2L_12721903_SNP [dm6]	G	C	5.056e^-5	0.584	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	7940369	2L_7940369_SNP [dm3] 2L_7940369_SNP [dm6]	C	T	5.060e^-5	0.584	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
2R	15540432	2R_15540432_SNP [dm3] 2R_19652927_SNP [dm6]	C	T	5.073e^-5	0.584	UPSTREAM CR44213 DOWNSTREAM Ir56e EXON CR44212
2R	17621665	2R_17621665_SNP [dm3] 2R_21734160_SNP [dm6]	T	A	5.118e^-5	0.584	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10814069	2R_10814069_SNP [dm3] 2R_14926564_SNP [dm6]	T	C	5.142e^-5	0.584	UTR_5_PRIME CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20751713	X_20751713_SNP [dm3] X_20880686_SNP [dm6]	A	T	5.244e^-5	0.593	INTRON shakB
2L	1269667	2L_1269667_SNP [dm3] 2L_1269667_SNP [dm6]	G	T	5.340e^-5	0.597	INTRON robo3
2R	17190424	2R_17190424_SNP [dm3] 2R_21302919_SNP [dm6]	G	A	5.344e^-5	0.597	INTRON CG42672
2L	2972381	2L_2972381_SNP [dm3] 2L_2972381_SNP [dm6]	T	C	5.424e^-5	0.602	UTR_5_PRIME Rrp1 UPSTREAM gammaTub23C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
3R	17692864	3R_17692864_SNP [dm3] 3R_21867142_SNP [dm6]	T	C	5.494e^-5	0.606	SYNONYMOUS_CODING CG6569 UTR_3_PRIME CG6569 UPSTREAM Cby DOWNSTREAM lsn
2R	5235581	2R_5235581_SNP [dm3] 2R_9348076_SNP [dm6]	T	C	5.550e^-5	0.606	UTR_3_PRIME Or45a INTRON CG13954 & 1 other
2L	12899501	2L_12899501_SNP [dm3] 2L_12899501_SNP [dm6]	C	T	5.576e^-5	0.606	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	603284	X_603284_SNP [dm3] X_709251_SNP [dm6]	A	T	5.585e^-5	0.606	INTRON sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12798111	2L_12798111_SNP [dm3] 2L_12798111_SNP [dm6]	C	T	5.764e^-5	0.611	INTERGENIC
2L	7632048	2L_7632048_DEL [dm3] 2L_7632048_DEL [dm6]	AA	A	5.801e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	6227765	2L_6227765_DEL [dm3] 2L_6227765_DEL [dm6]	AGATACAATGTTGCAGTTTG...	A	5.803e^-5	0.611	DOWNSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2682962	3L_2682962_SNP [dm3] 3L_2682962_SNP [dm6]	C	T	5.814e^-5	0.611	INTRON Fife
2L	12798115	2L_12798115_SNP [dm3] 2L_12798115_SNP [dm6]	C	G	5.832e^-5	0.611	INTERGENIC
2L	12900449	2L_12900449_SNP [dm3] 2L_12900449_SNP [dm6]	T	A	5.834e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13353432	2L_13353432_SNP [dm3] 2L_13353432_SNP [dm6]	T	A	5.911e^-5	0.616	INTRON CG9395
2L	12721963	2L_12721963_SNP [dm3] 2L_12721963_SNP [dm6]	A	T	5.993e^-5	0.618	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	15207315	2L_15207315_SNP [dm3] 2L_15207315_SNP [dm6]	C	G	6.024e^-5	0.618	UPSTREAM CR44196 INTERGENIC
X	14118023	X_14118023_SNP [dm3] X_14223990_SNP [dm6]	G	A	6.028e^-5	0.618	DOWNSTREAM CG11674 INTRON l_1_G0007	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6565986	2L_6565986_SNP [dm3] 2L_6565986_SNP [dm6]	C	G	6.105e^-5	0.619	SYNONYMOUS_CODING CG13766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	9519920	2R_9519920_SNP [dm3] 2R_13632415_SNP [dm6]	G	T	6.107e^-5	0.619	INTRON fas
X	2462286	X_2462286_SNP [dm3] X_2568253_SNP [dm6]	T	C	6.134e^-5	0.619	INTRON Pdfr
X	4436667	X_4436667_SNP [dm3] X_4542634_SNP [dm6]	G	T	6.218e^-5	0.621	UTR_5_PRIME CG3568 DOWNSTREAM CHOp24 INTRON CR32773
X	4859927	X_4859927_SNP [dm3] X_4965894_SNP [dm6]	C	T	6.246e^-5	0.621	INTRON CR44833	regulatory region REDfly_CRMs
2L	3743766	2L_3743766_SNP [dm3] 2L_3743766_SNP [dm6]	A	C	6.260e^-5	0.621	INTRON CG10019
2L	12804498	2L_12804498_DEL [dm3] 2L_12804498_DEL [dm6]	TT	T	6.557e^-5	0.647	INTERGENIC
3L	17044151	3L_17044151_SNP [dm3] 3L_17051051_SNP [dm6]	G	T	6.668e^-5	0.652	UPSTREAM rogdi INTRON rogdi	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	7707053	2L_7707053_DEL [dm3] 2L_7707053_DEL [dm6]	TTAT	G	6.672e^-5	0.652	INTRON Tep3	TF binding site mE1_TFBS_inv
2L	7707066	2L_7707066_INS [dm3] 2L_7707066_INS [dm6]	T	TG	6.725e^-5	0.653	INTRON Tep3	TF binding site mE1_TFBS_inv
3R	16282190	3R_16282190_SNP [dm3] 3R_20456468_SNP [dm6]	T	A	6.752e^-5	0.653	INTRON Gfrl
2R	18232995	2R_18232995_SNP [dm3] 2R_22345490_SNP [dm6]	A	G	6.838e^-5	0.655	INTRON Liprin-gamma
3L	21775757	3L_21775757_SNP [dm3] 3L_21782657_SNP [dm6]	G	A	6.849e^-5	0.655	INTERGENIC
3L	7256324	3L_7256324_SNP [dm3] 3L_7263224_SNP [dm6]	C	T	6.942e^-5	0.659	INTRON CG14830
X	8606163	X_8606163_SNP [dm3] X_8712130_SNP [dm6]	A	C	6.962e^-5	0.659	DOWNSTREAM CG2004 INTRON Hexo2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26868913	3R_26868913_SNP [dm3] 3R_31043191_SNP [dm6]	A	G	7.073e^-5	0.66	SYNONYMOUS_CODING CanA1
3R	14163465	3R_14163465_SNP [dm3] 3R_18337743_SNP [dm6]	G	A	7.094e^-5	0.66	INTRON CG15803
3R	16282155	3R_16282155_INS [dm3] 3R_20456433_INS [dm6]	A	AAA	7.109e^-5	0.66	INTRON Gfrl
3L	4840580	3L_4840580_SNP [dm3] 3L_4840580_SNP [dm6]	C	G	7.120e^-5	0.66	UPSTREAM CG13707 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	12146480	2R_12146480_SNP [dm3] 2R_16258975_SNP [dm6]	C	T	7.147e^-5	0.66	INTRON CngA
X	18953837	X_18953837_DEL [dm3] X_19059804_DEL [dm6]	AAG	A	7.295e^-5	0.671	INTRON CG14190
2L	20549199	2L_20549199_SNP [dm3] 2L_20549199_SNP [dm6]	A	G	7.383e^-5	0.676	INTERGENIC
2L	11612145	2L_11612145_SNP [dm3] 2L_11612145_SNP [dm6]	A	C	7.440e^-5	0.677	UPSTREAM spag4 INTRON kek2
2L	12798915	2L_12798915_SNP [dm3] 2L_12798915_SNP [dm6]	A	G	7.717e^-5	0.687	INTERGENIC
3R	20892358	3R_20892358_SNP [dm3] 3R_25066636_SNP [dm6]	C	T	7.723e^-5	0.687	UTR_3_PRIME PQBP1 DOWNSTREAM OstStt3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12089860	2L_12089860_SNP [dm3] 2L_12089860_SNP [dm6]	C	A	7.826e^-5	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17511209	2R_17511209_SNP [dm3] 2R_21623704_SNP [dm6]	G	A	7.844e^-5	0.687	SYNONYMOUS_CODING PTP-ER	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	4527144	2R_4527144_SNP [dm3] 2R_8639639_SNP [dm6]	T	A	7.925e^-5	0.687	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
2R	9160125	2R_9160125_SNP [dm3] 2R_13272620_SNP [dm6]	A	G	7.932e^-5	0.687	INTRON Dh31-R
3L	2572192	3L_2572192_SNP [dm3] 3L_2572192_SNP [dm6]	A	T	7.962e^-5	0.687	INTRON msn
3R	10238767	3R_10238767_SNP [dm3] 3R_14413045_SNP [dm6]	A	T	7.984e^-5	0.687	INTRON cv-c
X	20575395	X_20575395_SNP [dm3] X_20704368_SNP [dm6]	A	G	8.002e^-5	0.687	INTERGENIC	regulatory region REDfly_CRMs
X	18367527	X_18367527_SNP [dm3] X_18473494_SNP [dm6]	G	C	8.151e^-5	0.687	INTRON CG32547
2R	12298638	2R_12298638_SNP [dm3] 2R_16411133_SNP [dm6]	A	G	8.198e^-5	0.687	INTRON Sema-2b
2R	15540421	2R_15540421_SNP [dm3] 2R_19652916_SNP [dm6]	T	A	8.208e^-5	0.687	UPSTREAM CR44213 DOWNSTREAM Ir56e EXON CR44212
2L	6380438	2L_6380438_SNP [dm3] 2L_6380438_SNP [dm6]	G	A	8.229e^-5	0.687	UPSTREAM CG9507 INTRON CG42368
3R	24747991	3R_24747991_SNP [dm3] 3R_28922269_SNP [dm6]	G	C	8.240e^-5	0.687	UTR_3_PRIME Doa UPSTREAM CG11828 DOWNSTREAM Doa
3R	20103618	3R_20103618_SNP [dm3] 3R_24277896_SNP [dm6]	G	T	8.256e^-5	0.687	NON_SYNONYMOUS_CODING Orct	TF binding site mE1_TFBS_chinmo
2R	16441698	2R_16441698_SNP [dm3] 2R_20554193_SNP [dm6]	G	A	8.320e^-5	0.687	INTERGENIC
2L	12722126	2L_12722126_SNP [dm3] 2L_12722126_SNP [dm6]	A	C	8.328e^-5	0.687	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	13838508	2L_13838508_SNP [dm3] 2L_13838508_SNP [dm6]	T	G	8.329e^-5	0.687	DOWNSTREAM CG33307 INTRON CenG1A	TF binding site mE1_TFBS_HSA
X	8502718	X_8502718_SNP [dm3] X_8608685_SNP [dm6]	A	C	8.331e^-5	0.687	INTERGENIC
2L	6380378	2L_6380378_SNP [dm3] 2L_6380378_SNP [dm6]	C	G	8.349e^-5	0.687	UPSTREAM CG9507 INTRON CG42368
X	12342521	X_12342521_SNP [dm3] X_12448488_SNP [dm6]	C	G	8.420e^-5	0.687	INTRON Pkcdelta
3R	18653612	3R_18653612_SNP [dm3] 3R_22827890_SNP [dm6]	T	C	8.436e^-5	0.687	UPSTREAM CR44350 INTERGENIC
2L	12802211	2L_12802211_SNP [dm3] 2L_12802211_SNP [dm6]	A	T	8.471e^-5	0.687	INTERGENIC
2R	19937565	2R_19937565_SNP [dm3] 2R_24050042_SNP [dm6]	C	T	8.594e^-5	0.687	SYNONYMOUS_CODING sei
2L	5685168	2L_5685168_SNP [dm3] 2L_5685168_SNP [dm6]	T	G	8.595e^-5	0.687	INTERGENIC
2L	7643166	2L_7643166_SNP [dm3] 2L_7643166_SNP [dm6]	G	T	8.603e^-5	0.687	UTR_3_PRIME Slob DOWNSTREAM Slob
2L	21377859	2L_21377859_SNP [dm3] 2L_21377859_SNP [dm6]	C	T	8.654e^-5	0.687	UTR_3_PRIME CG8665	transposable element FlyBase
3L	14582465	3L_14582465_SNP [dm3] 3L_14589365_SNP [dm6]	C	A	8.702e^-5	0.687	INTRON HGTX
3L	14582466	3L_14582466_SNP [dm3] 3L_14589366_SNP [dm6]	C	A	8.702e^-5	0.687	INTRON HGTX
3L	10562800	3L_10562800_SNP [dm3] 3L_10569700_SNP [dm6]	T	C	8.766e^-5	0.687	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12259291	2R_12259291_SNP [dm3] 2R_16371786_SNP [dm6]	A	G	8.918e^-5	0.687	INTERGENIC
2R	16109071	2R_16109071_SNP [dm3] 2R_20221566_SNP [dm6]	A	T	8.948e^-5	0.687	EXON CR45423
2R	18372866	2R_18372866_SNP [dm3] 2R_22485361_SNP [dm6]	T	C	8.957e^-5	0.687	SYNONYMOUS_CODING CG4554
X	13809512	X_13809512_DEL [dm3] X_13915479_DEL [dm6]	ATGTTATAAACAAACATTCT...	TA	9.012e^-5	0.687	INTRON mamo
2L	12798898	2L_12798898_SNP [dm3] 2L_12798898_SNP [dm6]	C	T	9.078e^-5	0.687	INTERGENIC
2L	9749103	2L_9749103_SNP [dm3] 2L_9749103_SNP [dm6]	C	G	9.078e^-5	0.687	INTRON Cyp4e3
2L	9502531	2L_9502531_SNP [dm3] 2L_9502531_SNP [dm6]	T	A	9.111e^-5	0.687	INTRON CG33298
3R	22543916	3R_22543916_SNP [dm3] 3R_26718194_SNP [dm6]	T	C	9.122e^-5	0.687	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4957303	3L_4957303_DEL [dm3] 3L_4957303_DEL [dm6]	ATTTCAGTTCA...	A	9.144e^-5	0.687	INTRON Con
3R	18535684	3R_18535684_SNP [dm3] 3R_22709962_SNP [dm6]	T	C	9.180e^-5	0.687	NON_SYNONYMOUS_CODING CG4907 SPLICE_SITE_REGION CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi
3R	23208671	3R_23208671_SNP [dm3] 3R_27382949_SNP [dm6]	C	A	9.194e^-5	0.687	INTRON side
3L	19952863	3L_19952863_SNP [dm3] 3L_19959763_SNP [dm6]	C	T	9.210e^-5	0.687	INTRON Ac76E
2L	9714900	2L_9714900_SNP [dm3] 2L_9714900_SNP [dm6]	G	A	9.210e^-5	0.687	UTR_3_PRIME Nckx30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12798899	2L_12798899_SNP [dm3] 2L_12798899_SNP [dm6]	G	A	9.214e^-5	0.687	INTERGENIC
3L	11312771	3L_11312771_SNP [dm3] 3L_11319671_SNP [dm6]	T	A	9.309e^-5	0.687	UTR_3_PRIME CG6168 DOWNSTREAM CG6168
3L	12864506	3L_12864506_SNP [dm3] 3L_12871406_SNP [dm6]	A	T	9.330e^-5	0.687	INTERGENIC
X	18953831	X_18953831_DEL [dm3] X_19059798_DEL [dm6]	AAGTG	C	9.470e^-5	0.687	INTRON CG14190
3L	3282449	3L_3282449_SNP [dm3] 3L_3282449_SNP [dm6]	A	C	9.483e^-5	0.687	INTRON CG12017
3R	18520503	3R_18520503_SNP [dm3] 3R_22694781_SNP [dm6]	G	T	9.676e^-5	0.687	UPSTREAM cd DOWNSTREAM Nup133 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13353489	2L_13353489_SNP [dm3] 2L_13353489_SNP [dm6]	C	G	9.811e^-5	0.687	INTRON CG9395
2R	7127509	2R_7127509_SNP [dm3] 2R_11240004_SNP [dm6]	T	G	9.850e^-5	0.687	SYNONYMOUS_CODING CG13215	TF binding site mE1_TFBS_sens
3R	24682414	3R_24682414_SNP [dm3] 3R_28856692_SNP [dm6]	T	C	9.881e^-5	0.687	INTRON spg & 1 other	TF binding site BDTNP1_TFBS_dl
3L	10567358	3L_10567358_DEL [dm3] 3L_10574258_DEL [dm6]	AAAGTAAA	A	9.886e^-5	0.687	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna
3R	18084312	3R_18084312_SNP [dm3] 3R_22258590_SNP [dm6]	A	T	9.921e^-5	0.687	INTRON SKIP
2L	12886534	2L_12886534_SNP [dm3] 2L_12886534_SNP [dm6]	T	G	9.954e^-5	0.687	INTERGENIC
X	21149428	X_21149428_SNP [dm3] X_21278401_SNP [dm6]	C	A	9.957e^-5	0.687	INTRON CG32521
3L	11477865	3L_11477865_SNP [dm3] 3L_11484765_SNP [dm6]	T	C	9.987e^-5	0.687	INTERGENIC
2L	6380445	2L_6380445_SNP [dm3] 2L_6380445_SNP [dm6]	A	G	1.001e^-4	0.687	UPSTREAM CG9507 INTRON CG42368
3L	7167626	3L_7167626_SNP [dm3] 3L_7174526_SNP [dm6]	T	G	1.002e^-4	0.687	UTR_3_PRIME Dscam2 INTRON Dscam2
3R	25459967	3R_25459967_SNP [dm3] 3R_29634245_SNP [dm6]	G	A	1.007e^-4	0.687	INTRON Dop1R2
3L	14580641	3L_14580641_SNP [dm3] 3L_14587541_SNP [dm6]	C	G	1.016e^-4	0.687	INTRON HGTX
X	18036912	X_18036912_INS [dm3] X_18142879_INS [dm6]	A	ATTTTTAGTAA...	1.027e^-4	0.687	INTERGENIC
3R	22350171	3R_22350171_SNP [dm3] 3R_26524449_SNP [dm6]	G	T	1.033e^-4	0.687	INTRON plum
3R	16282172	3R_16282172_SNP [dm3] 3R_20456450_SNP [dm6]	A	G	1.035e^-4	0.687	INTRON Gfrl
2L	7643185	2L_7643185_SNP [dm3] 2L_7643185_SNP [dm6]	A	G	1.044e^-4	0.687	UTR_3_PRIME Slob DOWNSTREAM Slob
X	20751689	X_20751689_SNP [dm3] X_20880662_SNP [dm6]	G	C	1.044e^-4	0.687	INTRON shakB
3L	1008435	3L_1008435_SNP [dm3] 3L_1008435_SNP [dm6]	T	A	1.047e^-4	0.687	UPSTREAM trio INTRON trio
2R	17553375	2R_17553375_SNP [dm3] 2R_21665870_SNP [dm6]	A	G	1.053e^-4	0.687	UTR_3_PRIME CG42362 & 1 other UPSTREAM CG42364 & 1 other
2R	17553386	2R_17553386_SNP [dm3] 2R_21665881_SNP [dm6]	G	A	1.053e^-4	0.687	UTR_3_PRIME CG42362 & 1 other UPSTREAM CG42364 & 1 other
2L	17542421	2L_17542421_SNP [dm3] 2L_17542421_SNP [dm6]	T	A	1.054e^-4	0.687	DOWNSTREAM CR43304 INTERGENIC
3L	6836149	3L_6836149_SNP [dm3] 3L_6843049_SNP [dm6]	A	G	1.060e^-4	0.687	INTERGENIC
2L	12798890	2L_12798890_SNP [dm3] 2L_12798890_SNP [dm6]	A	T	1.073e^-4	0.687	INTERGENIC
3R	25594783	3R_25594783_SNP [dm3] 3R_29769061_SNP [dm6]	T	C	1.076e^-4	0.687	INTRON kay
2R	16823495	2R_16823495_SNP [dm3] 2R_20935990_SNP [dm6]	A	C	1.079e^-4	0.687	INTRON Rx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3608212	2L_3608212_SNP [dm3] 2L_3608212_SNP [dm6]	T	G	1.088e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12722080	2L_12722080_SNP [dm3] 2L_12722080_SNP [dm6]	C	G	1.093e^-4	0.687	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	6227687	2L_6227687_SNP [dm3] 2L_6227687_SNP [dm6]	C	A	1.095e^-4	0.687	DOWNSTREAM Ugt37b1 INTERGENIC
2L	13353426	2L_13353426_SNP [dm3] 2L_13353426_SNP [dm6]	G	A	1.096e^-4	0.687	INTRON CG9395
2L	12886536	2L_12886536_SNP [dm3] 2L_12886536_SNP [dm6]	A	T	1.102e^-4	0.687	INTERGENIC
2R	2045311	2R_2045311_SNP [dm3] 2R_6157806_SNP [dm6]	T	G	1.103e^-4	0.687	UPSTREAM EcR & 1 other INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10567400	3L_10567400_DEL [dm3] 3L_10574300_DEL [dm6]	TT	A	1.105e^-4	0.687	INTRON A2bp1
3R	3044851	3R_3044851_SNP [dm3] 3R_7219129_SNP [dm6]	G	A	1.107e^-4	0.687	SPLICE_SITE_REGION CG14605 INTRON CG14605
2L	10094222	2L_10094222_SNP [dm3] 2L_10094222_SNP [dm6]	T	C	1.109e^-4	0.687	INTRON CG44153 & 1 other
2L	1147627	2L_1147627_SNP [dm3] 2L_1147627_SNP [dm6]	G	A	1.112e^-4	0.687	UPSTREAM CG4749 DOWNSTREAM MFS3 INTERGENIC
2L	12898212	2L_12898212_SNP [dm3] 2L_12898212_SNP [dm6]	A	T	1.119e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19839577	3L_19839577_SNP [dm3] 3L_19846477_SNP [dm6]	C	G	1.121e^-4	0.687	UPSTREAM Papss INTRON Papss	TF binding site mE1_TFBS_inv
2R	7267521	2R_7267521_SNP [dm3] 2R_11380016_SNP [dm6]	C	T	1.128e^-4	0.687	UPSTREAM Tsp47F DOWNSTREAM Sod3 INTERGENIC
X	13101211	X_13101211_INS [dm3] X_13207178_INS [dm6]	A	AAATAT	1.134e^-4	0.687	INTRON sno
2R	14832295	2R_14832295_SNP [dm3] 2R_18944790_SNP [dm6]	A	G	1.141e^-4	0.687	INTRON sano
2R	19600120	2R_19600120_SNP [dm3] 2R_23712597_SNP [dm6]	T	C	1.156e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21341137	X_21341137_SNP [dm3] X_21470110_SNP [dm6]	A	G	1.158e^-4	0.687	INTERGENIC
3L	10561088	3L_10561088_SNP [dm3] 3L_10567988_SNP [dm6]	T	C	1.171e^-4	0.687	INTRON A2bp1
3L	12094681	3L_12094681_SNP [dm3] 3L_12101581_SNP [dm6]	G	A	1.180e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	6444540	X_6444540_SNP [dm3] X_6550507_SNP [dm6]	T	A	1.181e^-4	0.687	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
3R	15633800	3R_15633800_SNP [dm3] 3R_19808078_SNP [dm6]	C	T	1.186e^-4	0.687	INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14447129	2L_14447129_SNP [dm3] 2L_14447129_SNP [dm6]	A	T	1.196e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7939352	2L_7939352_SNP [dm3] 2L_7939352_SNP [dm6]	C	G	1.204e^-4	0.687	INTRON Snoo
2L	20648821	2L_20648821_SNP [dm3] 2L_20648821_SNP [dm6]	A	G	1.207e^-4	0.687	UPSTREAM CG18810 DOWNSTREAM snoRNA:Me28S-C2645a & 2 others EXON Uhg3
X	8439675	X_8439675_SNP [dm3] X_8545642_SNP [dm6]	T	C	1.208e^-4	0.687	SYNONYMOUS_CODING Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9978320	X_9978320_SNP [dm3] X_10084287_SNP [dm6]	C	A	1.208e^-4	0.687	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7037876	2R_7037876_SNP [dm3] 2R_11150371_SNP [dm6]	T	C	1.212e^-4	0.687	UPSTREAM CG12391 INTRON CG13229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12898062	2L_12898062_SNP [dm3] 2L_12898062_SNP [dm6]	A	T	1.215e^-4	0.687	INTERGENIC
3R	2673094	3R_2673094_SNP [dm3] 3R_6847372_SNP [dm6]	T	G	1.220e^-4	0.687	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11479453	3L_11479453_SNP [dm3] 3L_11486353_SNP [dm6]	T	G	1.221e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	2050602	2R_2050602_SNP [dm3] 2R_6163097_SNP [dm6]	G	A	1.221e^-4	0.687	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Ab & 1 other INTRON EcR	TF binding site mE1_TFBS_cad
X	18036915	X_18036915_INS [dm3] X_18142882_INS [dm6]	A	AGTTCCAAAGATTTTATTGG...	1.221e^-4	0.687	INTERGENIC
2L	12089901	2L_12089901_SNP [dm3] 2L_12089901_SNP [dm6]	A	C	1.230e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9748285	2L_9748285_SNP [dm3] 2L_9748285_SNP [dm6]	A	G	1.242e^-4	0.687	SYNONYMOUS_CODING Cyp4e3
X	6444494	X_6444494_SNP [dm3] X_6550461_SNP [dm6]	G	C	1.244e^-4	0.687	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
2L	18531201	2L_18531201_SNP [dm3] 2L_18531201_SNP [dm6]	A	G	1.244e^-4	0.687	SPLICE_SITE_REGION CG10211 DOWNSTREAM Pde11 INTRON CG10211
X	8713433	X_8713433_SNP [dm3] X_8819400_SNP [dm6]	T	A	1.246e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18367526	X_18367526_SNP [dm3] X_18473493_SNP [dm6]	T	G	1.248e^-4	0.687	INTRON CG32547
2L	3698424	2L_3698424_SNP [dm3] 2L_3698424_SNP [dm6]	T	G	1.251e^-4	0.687	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
X	5809265	X_5809265_SNP [dm3] X_5915232_SNP [dm6]	G	A	1.254e^-4	0.687	UTR_5_PRIME CG3011 DOWNSTREAM CR44108 INTRON CG3011
2R	9520011	2R_9520011_SNP [dm3] 2R_13632506_SNP [dm6]	G	T	1.256e^-4	0.687	INTRON fas
2R	17553405	2R_17553405_SNP [dm3] 2R_21665900_SNP [dm6]	T	C	1.262e^-4	0.687	UTR_3_PRIME CG42362 & 1 other UPSTREAM CG42364 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	8580327	3L_8580327_SNP [dm3] 3L_8587227_SNP [dm6]	A	G	1.271e^-4	0.687	INTRON CG43078	TF binding site mE1_TFBS_chinmo
2R	18372851	2R_18372851_SNP [dm3] 2R_22485346_SNP [dm6]	C	G	1.273e^-4	0.687	SYNONYMOUS_CODING CG4554
2R	7127033	2R_7127033_SNP [dm3] 2R_11239528_SNP [dm6]	C	A	1.278e^-4	0.687	UTR_3_PRIME CG13215 UPSTREAM CG13216	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	12893667	2L_12893667_INS [dm3] 2L_12893667_INS [dm6]	G	AA	1.278e^-4	0.687	INTERGENIC
2L	1247893	2L_1247893_SNP [dm3] 2L_1247893_SNP [dm6]	A	T	1.280e^-4	0.687	INTERGENIC
3R	22543937	3R_22543937_SNP [dm3] 3R_26718215_SNP [dm6]	G	C	1.286e^-4	0.687	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4859959	X_4859959_SNP [dm3] X_4965926_SNP [dm6]	G	T	1.299e^-4	0.687	INTRON CR44833	regulatory region REDfly_CRMs
2L	12770278	2L_12770278_SNP [dm3] 2L_12770278_SNP [dm6]	C	G	1.300e^-4	0.687	INTERGENIC
X	4236958	X_4236958_SNP [dm3] X_4342925_SNP [dm6]	C	T	1.303e^-4	0.687	INTRON norpA
2L	6399030	2L_6399030_SNP [dm3] 2L_6399030_SNP [dm6]	T	A	1.315e^-4	0.687	INTRON CG42368
2R	2047288	2R_2047288_SNP [dm3] 2R_6159783_SNP [dm6]	T	A	1.317e^-4	0.687	DOWNSTREAM CR43904 INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22542460	3R_22542460_SNP [dm3] 3R_26716738_SNP [dm6]	A	G	1.321e^-4	0.687	SYNONYMOUS_CODING CG6425	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12688898	2L_12688898_SNP [dm3] 2L_12688898_SNP [dm6]	G	T	1.328e^-4	0.687	INTERGENIC
3R	22715363	3R_22715363_SNP [dm3] 3R_26889641_SNP [dm6]	A	G	1.332e^-4	0.687	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	14015204	2R_14015204_SNP [dm3] 2R_18127699_SNP [dm6]	G	T	1.333e^-4	0.687	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18684480	3R_18684480_SNP [dm3] 3R_22858758_SNP [dm6]	T	C	1.342e^-4	0.687	INTERGENIC
3R	14466691	3R_14466691_SNP [dm3] 3R_18640969_SNP [dm6]	G	A	1.343e^-4	0.687	UTR_5_PRIME CG14301 INTRON qin	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5984434	3L_5984434_SNP [dm3] 3L_5991334_SNP [dm6]	A	T	1.352e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	13353543	2L_13353543_SNP [dm3] 2L_13353543_SNP [dm6]	G	A	1.359e^-4	0.687	INTRON CG9395
2L	13253849	2L_13253849_SNP [dm3] 2L_13253849_SNP [dm6]	A	G	1.360e^-4	0.687	INTRON CG31728
X	18730490	X_18730490_SNP [dm3] X_18836457_SNP [dm6]	C	T	1.361e^-4	0.687	INTRON Pvf1
3R	4073686	3R_4073686_SNP [dm3] 3R_8247964_SNP [dm6]	T	G	1.366e^-4	0.687	UTR_3_PRIME CG18749 & 1 other UPSTREAM CG15864 DOWNSTREAM CG33722 & 1 other	TF binding site mE1_TFBS_HSA
2R	19632336	2R_19632336_SNP [dm3] 2R_23744813_SNP [dm6]	C	T	1.366e^-4	0.687	INTRON egl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	6380462	2L_6380462_SNP [dm3] 2L_6380462_SNP [dm6]	C	A	1.373e^-4	0.687	UPSTREAM CG9507 INTRON CG42368
3L	5639872	3L_5639872_SNP [dm3] 3L_5646772_SNP [dm6]	G	A	1.373e^-4	0.687	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4859928	X_4859928_SNP [dm3] X_4965895_SNP [dm6]	A	G	1.374e^-4	0.687	INTRON CR44833	regulatory region REDfly_CRMs
2L	14627182	2L_14627182_SNP [dm3] 2L_14627182_SNP [dm6]	G	A	1.378e^-4	0.687	INTRON osp	TF binding site BDTNP1_TFBS_dl
2L	17517986	2L_17517986_SNP [dm3] 2L_17517986_SNP [dm6]	A	G	1.378e^-4	0.687	INTRON Dhc36C	TF binding site mE1_TFBS_cad
2R	13540794	2R_13540794_SNP [dm3] 2R_17653289_SNP [dm6]	G	A	1.378e^-4	0.687	INTRON CCHa1-R
X	4310763	X_4310763_SNP [dm3] X_4416730_SNP [dm6]	A	G	1.378e^-4	0.687	INTRON CR32773 & 1 other
2R	6425822	2R_6425822_SNP [dm3] 2R_10538317_SNP [dm6]	A	G	1.380e^-4	0.687	INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13269262	3L_13269262_SNP [dm3] 3L_13276162_SNP [dm6]	A	G	1.382e^-4	0.687	SYNONYMOUS_CODING caps	TF binding site mE1_TFBS_chinmo
X	8502713	X_8502713_SNP [dm3] X_8608680_SNP [dm6]	C	A	1.384e^-4	0.687	INTERGENIC
2R	15392509	2R_15392509_SNP [dm3] 2R_19505004_SNP [dm6]	C	A	1.391e^-4	0.687	UPSTREAM CR44472 DOWNSTREAM CG11007 EXON CR44472	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17768704	3L_17768704_SNP [dm3] 3L_17775604_SNP [dm6]	G	A	1.392e^-4	0.687	INTERGENIC
2R	12708382	2R_12708382_SNP [dm3] 2R_16820877_SNP [dm6]	T	C	1.396e^-4	0.687	INTERGENIC
3R	9006701	3R_9006701_SNP [dm3] 3R_13180979_SNP [dm6]	A	T	1.398e^-4	0.687	UPSTREAM CG8138 INTERGENIC
X	17586758	X_17586758_SNP [dm3] X_17692725_SNP [dm6]	T	C	1.401e^-4	0.687	INTRON chas
2R	2077514	2R_2077514_SNP [dm3] 2R_6190009_SNP [dm6]	C	T	1.402e^-4	0.687	UPSTREAM tRNA:N5:42Ad DOWNSTREAM tRNA:N5:42Ae INTRON Ptr	TF binding site BDTNP1_TFBS_dl
2L	6398993	2L_6398993_SNP [dm3] 2L_6398993_SNP [dm6]	T	C	1.404e^-4	0.687	INTRON CG42368
2R	15910358	2R_15910358_SNP [dm3] 2R_20022853_SNP [dm6]	C	A	1.404e^-4	0.687	INTERGENIC
3R	12766433	3R_12766433_SNP [dm3] 3R_16940711_SNP [dm6]	G	A	1.406e^-4	0.687	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	23319201	3R_23319201_SNP [dm3] 3R_27493479_SNP [dm6]	G	T	1.406e^-4	0.687	INTERGENIC
2L	6399034	2L_6399034_SNP [dm3] 2L_6399034_SNP [dm6]	G	T	1.407e^-4	0.687	INTRON CG42368
2L	9748943	2L_9748943_SNP [dm3] 2L_9748943_SNP [dm6]	T	G	1.415e^-4	0.687	SYNONYMOUS_CODING Cyp4e3
X	6444537	X_6444537_SNP [dm3] X_6550504_SNP [dm6]	A	G	1.424e^-4	0.687	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
X	7553082	X_7553082_SNP [dm3] X_7659049_SNP [dm6]	C	T	1.426e^-4	0.687	INTRON ct	TF binding site mE1_TFBS_inv
3R	15521801	3R_15521801_SNP [dm3] 3R_19696079_SNP [dm6]	G	A	1.428e^-4	0.687	INTRON Naam
3R	16282127	3R_16282127_DEL [dm3] 3R_20456405_DEL [dm6]	ATT	A	1.429e^-4	0.687	INTRON Gfrl
3R	16282131	3R_16282131_SNP [dm3] 3R_20456409_SNP [dm6]	A	C	1.429e^-4	0.687	INTRON Gfrl
3R	25360789	3R_25360789_SNP [dm3] 3R_29535067_SNP [dm6]	C	T	1.434e^-4	0.687	EXON CR43613	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18318067	3L_18318067_SNP [dm3] 3L_18324967_SNP [dm6]	A	T	1.451e^-4	0.687	INTERGENIC
X	14825198	X_14825198_SNP [dm3] X_14931165_SNP [dm6]	G	A	1.458e^-4	0.687	SYNONYMOUS_CODING Flo2	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12765129	2L_12765129_SNP [dm3] 2L_12765129_SNP [dm6]	A	G	1.459e^-4	0.687	INTERGENIC
3R	18360161	3R_18360161_SNP [dm3] 3R_22534439_SNP [dm6]	A	C	1.460e^-4	0.687	INTRON CG5326
2L	20029874	2L_20029874_SNP [dm3] 2L_20029874_SNP [dm6]	C	A	1.460e^-4	0.687	INTRON sNPF
2R	2042594	2R_2042594_SNP [dm3] 2R_6155089_SNP [dm6]	G	T	1.460e^-4	0.687	INTRON EcR
X	18212540	X_18212540_SNP [dm3] X_18318507_SNP [dm6]	A	C	1.463e^-4	0.687	INTRON CG6023
X	16997410	X_16997410_SNP [dm3] X_17103377_SNP [dm6]	G	A	1.470e^-4	0.687	SYNONYMOUS_CODING CG4991
X	12217611	X_12217611_SNP [dm3] X_12323578_SNP [dm6]	T	G	1.475e^-4	0.687	INTRON Ten-a
X	20324600	X_20324600_SNP [dm3] X_20453573_SNP [dm6]	T	G	1.482e^-4	0.687	INTRON CG32506
3L	10567349	3L_10567349_DEL [dm3] 3L_10574249_DEL [dm6]	AATA	A	1.482e^-4	0.687	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna
X	18730164	X_18730164_SNP [dm3] X_18836131_SNP [dm6]	A	T	1.491e^-4	0.687	INTRON Pvf1
2L	7707009	2L_7707009_SNP [dm3] 2L_7707009_SNP [dm6]	G	A	1.492e^-4	0.687	SYNONYMOUS_CODING Tep3	TF binding site mE1_TFBS_inv
3L	12195513	3L_12195513_SNP [dm3] 3L_12202413_SNP [dm6]	A	G	1.494e^-4	0.687	INTRON Adk1
2L	12898141	2L_12898141_SNP [dm3] 2L_12898141_SNP [dm6]	A	G	1.497e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2682970	3L_2682970_DEL [dm3] 3L_2682970_DEL [dm6]	ACTAAA	A	1.500e^-4	0.687	INTRON Fife
3L	2682982	3L_2682982_SNP [dm3] 3L_2682982_SNP [dm6]	C	G	1.500e^-4	0.687	INTRON Fife
2L	5425765	2L_5425765_SNP [dm3] 2L_5425765_SNP [dm6]	G	A	1.502e^-4	0.687	INTERGENIC
X	14808274	X_14808274_SNP [dm3] X_14914241_SNP [dm6]	T	C	1.502e^-4	0.687	UPSTREAM CG12398 INTRON Flo2
3R	13530095	3R_13530095_SNP [dm3] 3R_17704373_SNP [dm6]	T	A	1.507e^-4	0.687	INTRON osa	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	15400942	2R_15400942_SNP [dm3] 2R_19513437_SNP [dm6]	A	G	1.507e^-4	0.687	SYNONYMOUS_CODING Ir56d
2L	18980135	2L_18980135_SNP [dm3] 2L_18980135_SNP [dm6]	C	T	1.507e^-4	0.687	INTRON Swip-1
2L	7707150	2L_7707150_SNP [dm3] 2L_7707150_SNP [dm6]	C	G	1.509e^-4	0.687	SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990	TF binding site mE1_TFBS_inv
2R	12509373	2R_12509373_SNP [dm3] 2R_16621868_SNP [dm6]	T	A	1.514e^-4	0.687	INTRON CG5065	TF binding site mE1_TFBS_cad
2R	16062668	2R_16062668_SNP [dm3] 2R_20175163_SNP [dm6]	T	A	1.516e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18650384	3R_18650384_SNP [dm3] 3R_22824662_SNP [dm6]	T	C	1.524e^-4	0.687	EXON CR44350	TF binding site mE1_TFBS_inv
2R	2050749	2R_2050749_SNP [dm3] 2R_6163244_SNP [dm6]	A	G	1.527e^-4	0.687	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Ab & 1 other INTRON EcR	transposable element FlyBase
X	20612463	X_20612463_SNP [dm3] X_20741436_SNP [dm6]	A	C	1.531e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	12897887	2L_12897887_SNP [dm3] 2L_12897887_SNP [dm6]	T	G	1.535e^-4	0.687	INTERGENIC
2L	12774310	2L_12774310_SNP [dm3] 2L_12774310_SNP [dm6]	C	G	1.535e^-4	0.687	INTERGENIC
2R	2049645	2R_2049645_SNP [dm3] 2R_6162140_SNP [dm6]	T	C	1.540e^-4	0.687	UPSTREAM tRNA:N5:42Ab & 2 others DOWNSTREAM tRNA:R2:42Ac & 1 other INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	3044865	3R_3044865_SNP [dm3] 3R_7219143_SNP [dm6]	T	A	1.541e^-4	0.687	INTRON CG14605
3R	20782287	3R_20782287_SNP [dm3] 3R_24956565_SNP [dm6]	A	G	1.545e^-4	0.687	INTERGENIC
2L	20549374	2L_20549374_SNP [dm3] 2L_20549374_SNP [dm6]	G	C	1.547e^-4	0.687	INTERGENIC
3R	12899201	3R_12899201_SNP [dm3] 3R_17073479_SNP [dm6]	A	C	1.552e^-4	0.687	UPSTREAM Ns1 DOWNSTREAM Keap1 INTRON mRpS11	TF binding site BDTNP1_TFBS_dl
2R	9764517	2R_9764517_SNP [dm3] 2R_13877012_SNP [dm6]	C	T	1.553e^-4	0.687	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12298627	2R_12298627_SNP [dm3] 2R_16411122_SNP [dm6]	T	G	1.557e^-4	0.687	INTRON Sema-2b
3R	13642584	3R_13642584_SNP [dm3] 3R_17816862_SNP [dm6]	C	T	1.569e^-4	0.687	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16282159	3R_16282159_SNP [dm3] 3R_20456437_SNP [dm6]	C	A	1.579e^-4	0.687	INTRON Gfrl
2L	18980142	2L_18980142_SNP [dm3] 2L_18980142_SNP [dm6]	G	A	1.581e^-4	0.687	INTRON Swip-1
3L	9783231	3L_9783231_SNP [dm3] 3L_9790131_SNP [dm6]	T	A	1.590e^-4	0.687	DOWNSTREAM Zasp67 INTRON Zasp67	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	6157963	3L_6157963_SNP [dm3] 3L_6164863_SNP [dm6]	A	T	1.607e^-4	0.687	DOWNSTREAM CG10289 & 1 other INTERGENIC
3R	19226740	3R_19226740_SNP [dm3] 3R_23401018_SNP [dm6]	T	C	1.607e^-4	0.687	INTERGENIC
2R	2046498	2R_2046498_SNP [dm3] 2R_6158993_SNP [dm6]	T	C	1.608e^-4	0.687	INTRON EcR EXON CR43904	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	17550306	2L_17550306_SNP [dm3] 2L_17550306_SNP [dm6]	A	G	1.609e^-4	0.687	INTERGENIC
2R	19599724	2R_19599724_SNP [dm3] 2R_23712201_SNP [dm6]	G	A	1.610e^-4	0.687	INTERGENIC
2L	13269783	2L_13269783_SNP [dm3] 2L_13269783_SNP [dm6]	C	T	1.628e^-4	0.687	INTRON CG44085
X	4859941	X_4859941_SNP [dm3] X_4965908_SNP [dm6]	G	T	1.636e^-4	0.687	INTRON CR44833	regulatory region REDfly_CRMs
2L	5404623	2L_5404623_SNP [dm3] 2L_5404623_SNP [dm6]	A	C	1.643e^-4	0.687	UTR_5_PRIME H15 UPSTREAM H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	26867642	3R_26867642_SNP [dm3] 3R_31041920_SNP [dm6]	A	C	1.644e^-4	0.687	INTRON CanA1
X	3862196	X_3862196_SNP [dm3] X_3968163_SNP [dm6]	C	T	1.652e^-4	0.687	SYNONYMOUS_CODING CG6428 UPSTREAM CR45481 DOWNSTREAM CG6414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	10428679	2L_10428679_SNP [dm3] 2L_10428679_SNP [dm6]	T	A	1.653e^-4	0.687	UPSTREAM CG5188 DOWNSTREAM KdelR INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10563162	3L_10563162_SNP [dm3] 3L_10570062_SNP [dm6]	C	T	1.662e^-4	0.687	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	13674259	2R_13674259_SNP [dm3] 2R_17786754_SNP [dm6]	T	C	1.666e^-4	0.687	INTRON aft	TF binding site mE1_TFBS_sens
3L	13455173	3L_13455173_SNP [dm3] 3L_13462073_SNP [dm6]	A	C	1.669e^-4	0.687	INTRON CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19244916	2R_19244916_SNP [dm3] 2R_23357393_SNP [dm6]	A	C	1.669e^-4	0.687	UTR_5_PRIME CG3500 UPSTREAM CG9875 & 1 other DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	789024	3R_789024_SNP [dm3] 3R_4963302_SNP [dm6]	C	T	1.677e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9748942	2L_9748942_SNP [dm3] 2L_9748942_SNP [dm6]	A	C	1.678e^-4	0.687	NON_SYNONYMOUS_CODING Cyp4e3
2R	7127614	2R_7127614_SNP [dm3] 2R_11240109_SNP [dm6]	G	A	1.687e^-4	0.687	UTR_5_PRIME CG13215	TF binding site mE1_TFBS_sens
2R	15400930	2R_15400930_SNP [dm3] 2R_19513425_SNP [dm6]	A	T	1.687e^-4	0.687	SYNONYMOUS_CODING Ir56d
X	18037103	X_18037103_SNP [dm3] X_18143070_SNP [dm6]	C	T	1.697e^-4	0.687	INTERGENIC
X	6029428	X_6029428_SNP [dm3] X_6135395_SNP [dm6]	G	A	1.705e^-4	0.687	INTRON Ca-alpha1T
X	20612692	X_20612692_SNP [dm3] X_20741665_SNP [dm6]	T	C	1.714e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	18483086	3L_18483086_SNP [dm3] 3L_18489986_SNP [dm6]	A	G	1.717e^-4	0.687	INTRON AstC-R2
X	5051268	X_5051268_SNP [dm3] X_5157235_SNP [dm6]	A	T	1.719e^-4	0.687	INTRON rg & 1 other
2R	2059000	2R_2059000_SNP [dm3] 2R_6171495_SNP [dm6]	C	T	1.720e^-4	0.687	UPSTREAM tRNA:CR30316 DOWNSTREAM tRNA:K2:42Ad INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18730163	X_18730163_SNP [dm3] X_18836130_SNP [dm6]	C	G	1.727e^-4	0.687	INTRON Pvf1
2L	13950063	2L_13950063_SNP [dm3] 2L_13950063_SNP [dm6]	T	C	1.736e^-4	0.687	INTRON Ance-3
2L	14627203	2L_14627203_SNP [dm3] 2L_14627203_SNP [dm6]	A	G	1.740e^-4	0.687	INTRON osp	TF binding site BDTNP1_TFBS_dl
3R	18360157	3R_18360157_SNP [dm3] 3R_22534435_SNP [dm6]	C	T	1.741e^-4	0.687	INTRON CG5326
3R	24723192	3R_24723192_SNP [dm3] 3R_28897470_SNP [dm6]	T	C	1.741e^-4	0.687	INTRON Doa
2R	16391183	2R_16391183_SNP [dm3] 2R_20503678_SNP [dm6]	A	T	1.746e^-4	0.687	SYNONYMOUS_CODING Obp57c UPSTREAM Obp57b	regulatory region REDfly_CRMs
3R	1961612	3R_1961612_SNP [dm3] 3R_6135890_SNP [dm6]	T	A	1.751e^-4	0.687	INTERGENIC
2R	1944402	2R_1944402_SNP [dm3] 2R_6056897_SNP [dm6]	T	C	1.759e^-4	0.687	DOWNSTREAM CG7856 INTRON CCHa2-R
X	20327338	X_20327338_SNP [dm3] X_20456311_SNP [dm6]	T	A	1.764e^-4	0.687	INTRON CG32506
2R	19600084	2R_19600084_SNP [dm3] 2R_23712561_SNP [dm6]	T	C	1.771e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12093465	X_12093465_SNP [dm3] X_12199432_SNP [dm6]	G	T	1.775e^-4	0.687	INTRON Ten-a
X	7908491	X_7908491_SNP [dm3] X_8014458_SNP [dm6]	C	G	1.777e^-4	0.687	INTRON Tbh
2L	17542627	2L_17542627_SNP [dm3] 2L_17542627_SNP [dm6]	T	C	1.788e^-4	0.687	DOWNSTREAM CR43304 INTERGENIC
X	8502740	X_8502740_SNP [dm3] X_8608707_SNP [dm6]	C	T	1.795e^-4	0.687	INTERGENIC
2R	18373215	2R_18373215_SNP [dm3] 2R_22485710_SNP [dm6]	C	G	1.798e^-4	0.687	NON_SYNONYMOUS_CODING CG4554
3L	10567346	3L_10567346_SNP [dm3] 3L_10574246_SNP [dm6]	T	A	1.801e^-4	0.687	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna
2L	17254052	2L_17254052_SNP [dm3] 2L_17254052_SNP [dm6]	C	G	1.812e^-4	0.687	INTRON beat-IIIc
2R	5253138	2R_5253138_SNP [dm3] 2R_9365633_SNP [dm6]	G	A	1.823e^-4	0.687	INTRON CG13954	TF binding site mE1_TFBS_chinmo
3R	11105996	3R_11105996_DEL [dm3] 3R_15280274_DEL [dm6]	TATGC	T	1.825e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6878746	3L_6878746_SNP [dm3] 3L_6885646_SNP [dm6]	G	A	1.832e^-4	0.687	INTERGENIC
3L	8085580	3L_8085580_SNP [dm3] 3L_8092480_SNP [dm6]	A	C	1.834e^-4	0.687	UPSTREAM CG7565 INTRON Ect4
3L	2020573	3L_2020573_SNP [dm3] 3L_2020573_SNP [dm6]	T	C	1.837e^-4	0.687	NON_SYNONYMOUS_CODING CG42357
2R	8925560	2R_8925560_SNP [dm3] 2R_13038055_SNP [dm6]	C	T	1.847e^-4	0.687	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4675224	X_4675224_INS [dm3] X_4781191_INS [dm6]	C	CC	1.848e^-4	0.687	INTERGENIC
3R	18650358	3R_18650358_INS [dm3] 3R_22824636_INS [dm6]	C	CAGGATGC	1.848e^-4	0.687	EXON CR44350	TF binding site mE1_TFBS_inv
2R	12476652	2R_12476652_SNP [dm3] 2R_16589147_SNP [dm6]	A	G	1.851e^-4	0.687	UTR_5_PRIME CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8154028	3R_8154028_SNP [dm3] 3R_12328306_SNP [dm6]	C	A	1.852e^-4	0.687	DOWNSTREAM CR45584 INTERGENIC
2L	12721985	2L_12721985_SNP [dm3] 2L_12721985_SNP [dm6]	G	A	1.853e^-4	0.687	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	20549104	2L_20549104_SNP [dm3] 2L_20549104_SNP [dm6]	G	A	1.861e^-4	0.687	INTERGENIC
3L	3244461	3L_3244461_INS [dm3] 3L_3244461_INS [dm6]	T	TT	1.863e^-4	0.687	UPSTREAM CR45424 & 1 other INTERGENIC
3L	20309693	3L_20309693_DEL [dm3] 3L_20316593_DEL [dm6]	CC	C	1.864e^-4	0.687	UPSTREAM Spn77Ba DOWNSTREAM alphaSnap INTRON CR43875
X	8606186	X_8606186_SNP [dm3] X_8712153_SNP [dm6]	T	C	1.866e^-4	0.687	DOWNSTREAM CG2004 INTRON Hexo2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	12898158	2L_12898158_SNP [dm3] 2L_12898158_SNP [dm6]	C	T	1.866e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14627196	2L_14627196_SNP [dm3] 2L_14627196_SNP [dm6]	C	T	1.868e^-4	0.687	INTRON osp	TF binding site BDTNP1_TFBS_dl
2L	9396486	2L_9396486_SNP [dm3] 2L_9396486_SNP [dm6]	G	T	1.869e^-4	0.687	DOWNSTREAM CG4438 INTRON Shawl
3L	10911372	3L_10911372_SNP [dm3] 3L_10918272_SNP [dm6]	C	T	1.877e^-4	0.687	INTERGENIC
X	14813212	X_14813212_INS [dm3] X_14919179_INS [dm6]	A	AC	1.883e^-4	0.687	UPSTREAM Eo DOWNSTREAM CG9503 INTRON Flo2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	17692876	3R_17692876_SNP [dm3] 3R_21867154_SNP [dm6]	C	T	1.885e^-4	0.687	SYNONYMOUS_CODING CG6569 UTR_3_PRIME CG6569 UPSTREAM Cby DOWNSTREAM lsn
3R	17619936	3R_17619936_SNP [dm3] 3R_21794214_SNP [dm6]	A	T	1.887e^-4	0.687	INTRON CASK	TF binding site mE1_TFBS_HSA
2L	6552116	2L_6552116_SNP [dm3] 2L_6552116_SNP [dm6]	T	G	1.889e^-4	0.687	EXON CR44776
X	4676388	X_4676388_SNP [dm3] X_4782355_SNP [dm6]	A	G	1.891e^-4	0.687	NON_SYNONYMOUS_CODING CG15471
2L	12722184	2L_12722184_SNP [dm3] 2L_12722184_SNP [dm6]	A	G	1.906e^-4	0.687	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	13690663	3R_13690663_SNP [dm3] 3R_17864941_SNP [dm6]	A	T	1.908e^-4	0.687	NON_SYNONYMOUS_CODING tinc
3R	3831113	3R_3831113_SNP [dm3] 3R_8005391_SNP [dm6]	A	T	1.909e^-4	0.687	UTR_3_PRIME CG2698 DOWNSTREAM CG2767 INTRON CG2698
2L	12795711	2L_12795711_SNP [dm3] 2L_12795711_SNP [dm6]	G	A	1.911e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12795760	2L_12795760_SNP [dm3] 2L_12795760_SNP [dm6]	C	A	1.911e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9667036	3L_9667036_SNP [dm3] 3L_9673936_SNP [dm6]	T	C	1.915e^-4	0.687	INTRON fry
X	14808374	X_14808374_SNP [dm3] X_14914341_SNP [dm6]	C	T	1.917e^-4	0.687	UPSTREAM CG12398 INTRON Flo2
2L	21873411	2L_21873411_DEL [dm3] 2L_21873411_DEL [dm6]	AAAGCTATCTTTAA...	A	1.917e^-4	0.687	INTERGENIC
2L	12898022	2L_12898022_SNP [dm3] 2L_12898022_SNP [dm6]	T	A	1.919e^-4	0.687	INTERGENIC
3L	12092912	3L_12092912_SNP [dm3] 3L_12099812_SNP [dm6]	C	A	1.920e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1961613	3R_1961613_SNP [dm3] 3R_6135891_SNP [dm6]	A	C	1.922e^-4	0.687	INTERGENIC
X	19004520	X_19004520_SNP [dm3] X_19110487_SNP [dm6]	C	G	1.926e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2034912	2R_2034912_SNP [dm3] 2R_6147407_SNP [dm6]	C	G	1.931e^-4	0.687	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	21968126	3L_21968126_SNP [dm3] 3L_21975026_SNP [dm6]	T	A	1.931e^-4	0.687	INTRON CG7470
2L	20549403	2L_20549403_SNP [dm3] 2L_20549403_SNP [dm6]	C	T	1.935e^-4	0.687	INTERGENIC
2L	20549405	2L_20549405_SNP [dm3] 2L_20549405_SNP [dm6]	C	G	1.935e^-4	0.687	INTERGENIC
3R	18212151	3R_18212151_SNP [dm3] 3R_22386429_SNP [dm6]	T	C	1.937e^-4	0.687	UTR_3_PRIME CG43343 DOWNSTREAM CG5379
X	16408705	X_16408705_SNP [dm3] X_16514672_SNP [dm6]	T	A	1.938e^-4	0.687	INTRON para
3R	8485591	3R_8485591_SNP [dm3] 3R_12659869_SNP [dm6]	A	G	1.939e^-4	0.687	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
X	16429266	X_16429266_INS [dm3] X_16535233_INS [dm6]	C	CACT	1.941e^-4	0.687	INTERGENIC
2R	2043015	2R_2043015_SNP [dm3] 2R_6155510_SNP [dm6]	C	T	1.942e^-4	0.687	INTRON EcR
3R	16282666	3R_16282666_SNP [dm3] 3R_20456944_SNP [dm6]	G	T	1.944e^-4	0.687	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	18953805	X_18953805_SNP [dm3] X_19059772_SNP [dm6]	G	A	1.945e^-4	0.687	INTRON CG14190
2R	15135635	2R_15135635_SNP [dm3] 2R_19248130_SNP [dm6]	G	A	1.947e^-4	0.687	INTERGENIC
X	16409641	X_16409641_SNP [dm3] X_16515608_SNP [dm6]	T	A	1.957e^-4	0.687	INTRON para
2L	13573645	2L_13573645_SNP [dm3] 2L_13573645_SNP [dm6]	A	G	1.959e^-4	0.687	INTRON kuz	TF binding site BDTNP1_TFBS_twi
2L	12781693	2L_12781693_SNP [dm3] 2L_12781693_SNP [dm6]	G	A	1.959e^-4	0.687	INTERGENIC
2L	12772674	2L_12772674_SNP [dm3] 2L_12772674_SNP [dm6]	A	C	1.961e^-4	0.687	INTERGENIC
3L	14210635	3L_14210635_DEL [dm3] 3L_14217535_DEL [dm6]	GTTCTCGGTTACTAG...	G	1.963e^-4	0.687	UPSTREAM CG7768 INTRON nuf
2R	13283741	2R_13283741_SNP [dm3] 2R_17396236_SNP [dm6]	A	G	1.966e^-4	0.687	INTRON Sip1
3R	26870653	3R_26870653_SNP [dm3] 3R_31044931_SNP [dm6]	G	A	1.971e^-4	0.687	SYNONYMOUS_CODING CG33920 INTRON CanA1
X	20482247	X_20482247_SNP [dm3] X_20611220_SNP [dm6]	G	T	1.974e^-4	0.687	INTRON RunxA
3L	9195418	3L_9195418_SNP [dm3] 3L_9202318_SNP [dm6]	C	G	1.984e^-4	0.687	DOWNSTREAM Slc45-1 INTERGENIC
X	18036873	X_18036873_SNP [dm3] X_18142840_SNP [dm6]	T	A	1.984e^-4	0.687	INTERGENIC
2L	20466042	2L_20466042_SNP [dm3] 2L_20466042_SNP [dm6]	T	C	1.989e^-4	0.687	INTRON CR44980
2R	2073631	2R_2073631_SNP [dm3] 2R_6186126_SNP [dm6]	G	T	1.994e^-4	0.687	INTRON Ptr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12767648	3R_12767648_SNP [dm3] 3R_16941926_SNP [dm6]	A	T	1.997e^-4	0.687	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14304239	X_14304239_SNP [dm3] X_14410206_SNP [dm6]	A	G	2.010e^-4	0.687	INTRON dpr8
3L	18377141	3L_18377141_SNP [dm3] 3L_18384041_SNP [dm6]	A	T	2.016e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15701902	3L_15701902_DEL [dm3] 3L_15708802_DEL [dm6]	CAAACGATAGACTC...	C	2.022e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	7940313	2L_7940313_SNP [dm3] 2L_7940313_SNP [dm6]	G	A	2.025e^-4	0.687	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
X	18036911	X_18036911_SNP [dm3] X_18142878_SNP [dm6]	T	C	2.027e^-4	0.687	INTERGENIC
3R	15453694	3R_15453694_SNP [dm3] 3R_19627972_SNP [dm6]	A	G	2.028e^-4	0.687	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
3L	8587917	3L_8587917_SNP [dm3] 3L_8594817_SNP [dm6]	C	G	2.032e^-4	0.687	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5907305	2R_5907305_SNP [dm3] 2R_10019800_SNP [dm6]	A	C	2.036e^-4	0.687	INTRON Pka-R2
2R	16765740	2R_16765740_SNP [dm3] 2R_20878235_SNP [dm6]	T	C	2.037e^-4	0.687	NON_SYNONYMOUS_CODING Ipk1 INTRON Ipk1
2L	13253863	2L_13253863_SNP [dm3] 2L_13253863_SNP [dm6]	C	T	2.041e^-4	0.687	INTRON CG31728
3L	6157972	3L_6157972_SNP [dm3] 3L_6164872_SNP [dm6]	G	A	2.042e^-4	0.687	DOWNSTREAM CG10289 & 1 other INTERGENIC
X	18987648	X_18987648_SNP [dm3] X_19093615_SNP [dm6]	C	A	2.056e^-4	0.687	INTERGENIC
X	18272781	X_18272781_SNP [dm3] X_18378748_SNP [dm6]	A	G	2.058e^-4	0.687	SYNONYMOUS_CODING por DOWNSTREAM CrebB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11487174	3L_11487174_SNP [dm3] 3L_11494074_SNP [dm6]	C	A	2.067e^-4	0.687	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	2058070	2R_2058070_DEL [dm3] 2R_6170565_DEL [dm6]	TAG	A	2.070e^-4	0.687	DOWNSTREAM tRNA:R2:42Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20300999	2R_20300999_SNP [dm3] 2R_24413476_SNP [dm6]	A	G	2.074e^-4	0.687	NON_SYNONYMOUS_CODING CG45068 UTR_5_PRIME CG45069	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	3982338	2L_3982338_SNP [dm3] 2L_3982338_SNP [dm6]	C	T	2.076e^-4	0.687	INTRON fred
3L	6130239	3L_6130239_SNP [dm3] 3L_6137139_SNP [dm6]	C	T	2.078e^-4	0.687	UPSTREAM Lcp65Af DOWNSTREAM Lcp65Ae INTERGENIC
X	18036874	X_18036874_SNP [dm3] X_18142841_SNP [dm6]	A	C	2.082e^-4	0.687	INTERGENIC
2L	12795736	2L_12795736_SNP [dm3] 2L_12795736_SNP [dm6]	G	A	2.082e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20612452	X_20612452_SNP [dm3] X_20741425_SNP [dm6]	C	A	2.090e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	19178907	X_19178907_SNP [dm3] X_19284874_SNP [dm6]	C	A	2.091e^-4	0.687	UPSTREAM CG8034 INTRON CG8034	TF binding site mE1_TFBS_chinmo
3R	4723928	3R_4723928_SNP [dm3] 3R_8898206_SNP [dm6]	G	T	2.093e^-4	0.687	INTRON pyd	TF binding site BDTNP1_TFBS_dl
2L	12898067	2L_12898067_SNP [dm3] 2L_12898067_SNP [dm6]	T	A	2.095e^-4	0.687	INTERGENIC
3L	7400192	3L_7400192_SNP [dm3] 3L_7407092_SNP [dm6]	A	G	2.098e^-4	0.687	DOWNSTREAM pncr015:3L INTERGENIC
3R	9006660	3R_9006660_SNP [dm3] 3R_13180938_SNP [dm6]	T	C	2.104e^-4	0.687	UPSTREAM CG8138 INTERGENIC
2R	9743941	2R_9743941_SNP [dm3] 2R_13856436_SNP [dm6]	A	T	2.107e^-4	0.687	SYNONYMOUS_CODING tum UPSTREAM CG6553 DOWNSTREAM CR44367	TF binding site mE1_TFBS_cad
2R	8437137	2R_8437137_SNP [dm3] 2R_12549632_SNP [dm6]	T	C	2.107e^-4	0.687	INTRON fra
3R	12179802	3R_12179802_SNP [dm3] 3R_16354080_SNP [dm6]	C	A	2.108e^-4	0.687	INTRON CG10311
X	8606208	X_8606208_SNP [dm3] X_8712175_SNP [dm6]	C	T	2.114e^-4	0.687	DOWNSTREAM CG2004 INTRON Hexo2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5677293	3L_5677293_SNP [dm3] 3L_5684193_SNP [dm6]	G	A	2.123e^-4	0.687	INTRON sif
2L	15309496	2L_15309496_SNP [dm3] 2L_15309496_SNP [dm6]	C	T	2.130e^-4	0.687	INTERGENIC
3L	1845718	3L_1845718_DEL [dm3] 3L_1845718_DEL [dm6]	CAGCCGTCC	C	2.130e^-4	0.687	INTERGENIC
2R	5928073	2R_5928073_SNP [dm3] 2R_10040568_SNP [dm6]	G	A	2.132e^-4	0.687	UPSTREAM oys DOWNSTREAM CG34220 INTRON oys
X	15680559	X_15680559_SNP [dm3] X_15786526_SNP [dm6]	A	C	2.132e^-4	0.687	NON_SYNONYMOUS_CODING mRpS30 UPSTREAM Paf-AHalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13398327	X_13398327_SNP [dm3] X_13504294_SNP [dm6]	A	T	2.132e^-4	0.687	INTRON Neto	TF binding site mE1_TFBS_chinmo
2L	13229076	2L_13229076_SNP [dm3] 2L_13229076_SNP [dm6]	G	T	2.132e^-4	0.687	UPSTREAM CG16815 DOWNSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	2049037	2R_2049037_SNP [dm3] 2R_6161532_SNP [dm6]	A	T	2.133e^-4	0.687	UPSTREAM tRNA:R2:42Ac & 2 others DOWNSTREAM tRNA:N5:42Ac INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8185434	3R_8185434_SNP [dm3] 3R_12359712_SNP [dm6]	T	A	2.134e^-4	0.687	UPSTREAM CG4115 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	12224953	3L_12224953_SNP [dm3] 3L_12231853_SNP [dm6]	G	A	2.141e^-4	0.687	INTRON app
3R	23130918	3R_23130918_SNP [dm3] 3R_27305196_SNP [dm6]	A	G	2.146e^-4	0.687	INTRON CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10800734	2L_10800734_DEL [dm3] 2L_10800734_DEL [dm6]	GATG	G	2.148e^-4	0.687	SPLICE_SITE_REGION CG31869 UTR_5_PRIME CG31869 DOWNSTREAM CR44581
2L	12888504	2L_12888504_SNP [dm3] 2L_12888504_SNP [dm6]	G	T	2.148e^-4	0.687	INTERGENIC
3R	6246632	3R_6246632_SNP [dm3] 3R_10420910_SNP [dm6]	C	A	2.158e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18540430	2L_18540430_SNP [dm3] 2L_18540430_SNP [dm6]	C	T	2.160e^-4	0.687	INTRON Pde11
3L	14498992	3L_14498992_SNP [dm3] 3L_14505892_SNP [dm6]	C	A	2.162e^-4	0.687	INTRON bbg
3L	11050456	3L_11050456_SNP [dm3] 3L_11057356_SNP [dm6]	A	G	2.165e^-4	0.687	INTRON CG7888
2L	4229349	2L_4229349_SNP [dm3] 2L_4229349_SNP [dm6]	A	C	2.165e^-4	0.687	DOWNSTREAM RpL40 EXON CR44608
2L	12901026	2L_12901026_SNP [dm3] 2L_12901026_SNP [dm6]	A	G	2.170e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_cad
X	18730153	X_18730153_DEL [dm3] X_18836120_DEL [dm6]	TCT	T	2.171e^-4	0.687	INTRON Pvf1
X	11349981	X_11349981_SNP [dm3] X_11455948_SNP [dm6]	C	A	2.173e^-4	0.687	NON_SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
2R	8777046	2R_8777046_SNP [dm3] 2R_12889541_SNP [dm6]	C	T	2.174e^-4	0.687	INTRON vg	regulatory region FlyBase TF binding site mE1_TFBS_sens
3R	18640202	3R_18640202_SNP [dm3] 3R_22814480_SNP [dm6]	C	A	2.178e^-4	0.687	DOWNSTREAM CG13840 INTERGENIC
2L	19899049	2L_19899049_SNP [dm3] 2L_19899049_SNP [dm6]	C	A	2.181e^-4	0.687	INTRON sick
X	14304243	X_14304243_SNP [dm3] X_14410210_SNP [dm6]	A	G	2.184e^-4	0.687	INTRON dpr8
2L	9514711	2L_9514711_SNP [dm3] 2L_9514711_SNP [dm6]	A	G	2.185e^-4	0.687	INTRON CG33298
X	16164620	X_16164620_SNP [dm3] X_16270587_SNP [dm6]	T	A	2.192e^-4	0.687	SPLICE_SITE_REGION kat80 UPSTREAM Mfe2 INTRON kat80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7665734	2L_7665734_SNP [dm3] 2L_7665734_SNP [dm6]	C	T	2.198e^-4	0.687	UPSTREAM Myo28B1 INTRON Slob
X	8606192	X_8606192_SNP [dm3] X_8712159_SNP [dm6]	T	C	2.198e^-4	0.687	DOWNSTREAM CG2004 INTRON Hexo2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	12225235	3L_12225235_INS [dm3] 3L_12232135_INS [dm6]	C	CCTCT	2.199e^-4	0.687	INTRON app
2L	9379101	2L_9379101_SNP [dm3] 2L_9379101_SNP [dm6]	G	C	2.199e^-4	0.687	INTRON Shawl
3R	2766309	3R_2766309_SNP [dm3] 3R_6940587_SNP [dm6]	G	T	2.200e^-4	0.687	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2797262	X_2797262_SNP [dm3] X_2903229_SNP [dm6]	G	C	2.200e^-4	0.687	INTRON kirre
2R	1843786	2R_1843786_SNP [dm3] 2R_5956281_SNP [dm6]	C	G	2.201e^-4	0.687	INTERGENIC	transposable element FlyBase
3L	11487359	3L_11487359_SNP [dm3] 3L_11494259_SNP [dm6]	C	A	2.209e^-4	0.687	SYNONYMOUS_CODING chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12767213	3R_12767213_SNP [dm3] 3R_16941491_SNP [dm6]	T	C	2.223e^-4	0.687	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18578483	2R_18578483_SNP [dm3] 2R_22690978_SNP [dm6]	T	C	2.223e^-4	0.687	DOWNSTREAM CR44763 EXON CR44764	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	10051285	2R_10051285_SNP [dm3] 2R_14163780_SNP [dm6]	C	G	2.226e^-4	0.687	SYNONYMOUS_CODING Tango7 DOWNSTREAM O-fut1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8942589	2R_8942589_SNP [dm3] 2R_13055084_SNP [dm6]	C	T	2.227e^-4	0.687	DOWNSTREAM Drl-2 INTERGENIC
3R	14821513	3R_14821513_SNP [dm3] 3R_18995791_SNP [dm6]	C	T	2.230e^-4	0.687	INTRON gukh	TF binding site BDTNP1_TFBS_da
3L	10560991	3L_10560991_SNP [dm3] 3L_10567891_SNP [dm6]	C	T	2.232e^-4	0.687	INTRON A2bp1
2R	14490440	2R_14490440_SNP [dm3] 2R_18602935_SNP [dm6]	G	T	2.232e^-4	0.687	INTRON GEFmeso
2R	8925552	2R_8925552_SNP [dm3] 2R_13038047_SNP [dm6]	A	T	2.238e^-4	0.687	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7794057	3L_7794057_SNP [dm3] 3L_7800957_SNP [dm6]	T	C	2.241e^-4	0.687	INTRON CG32369
2R	8607330	2R_8607330_SNP [dm3] 2R_12719825_SNP [dm6]	T	C	2.249e^-4	0.687	INTRON CG42663
2R	17209290	2R_17209290_SNP [dm3] 2R_21321785_SNP [dm6]	A	T	2.249e^-4	0.687	INTRON CG30394
2L	19875112	2L_19875112_SNP [dm3] 2L_19875112_SNP [dm6]	C	A	2.252e^-4	0.687	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14212019	2R_14212019_SNP [dm3] 2R_18324514_SNP [dm6]	A	G	2.268e^-4	0.687	INTRON sbb
2L	21905489	2L_21905489_DEL [dm3] 2L_21905489_DEL [dm6]	TT	T	2.272e^-4	0.687	UPSTREAM CG1428 INTERGENIC
3R	4924721	3R_4924721_SNP [dm3] 3R_9098999_SNP [dm6]	T	A	2.272e^-4	0.687	INTRON pum
2L	9817228	2L_9817228_SNP [dm3] 2L_9817228_SNP [dm6]	T	C	2.273e^-4	0.687	INTRON nAChRalpha6
3L	11486312	3L_11486312_SNP [dm3] 3L_11493212_SNP [dm6]	T	A	2.282e^-4	0.687	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	606906	2L_606906_SNP [dm3] 2L_606906_SNP [dm6]	C	A	2.297e^-4	0.687	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14000418	2L_14000418_SNP [dm3] 2L_14000418_SNP [dm6]	T	A	2.299e^-4	0.687	INTRON rk
2R	9792734	2R_9792734_SNP [dm3] 2R_13905229_SNP [dm6]	A	G	2.301e^-4	0.687	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3L	3244476	3L_3244476_SNP [dm3] 3L_3244476_SNP [dm6]	G	C	2.302e^-4	0.687	UPSTREAM CR45424 & 1 other INTERGENIC
X	5021506	X_5021506_SNP [dm3] X_5127473_SNP [dm6]	G	T	2.303e^-4	0.687	INTRON rg & 1 other
X	21215699	X_21215699_SNP [dm3] X_21344672_SNP [dm6]	T	C	2.304e^-4	0.687	UTR_3_PRIME fliI UPSTREAM dod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	6763300	2R_6763300_SNP [dm3] 2R_10875795_SNP [dm6]	A	T	2.315e^-4	0.687	UTR_5_PRIME nclb UPSTREAM CG30016	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3R	24747284	3R_24747284_SNP [dm3] 3R_28921562_SNP [dm6]	C	T	2.318e^-4	0.687	INTRON Doa	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6026065	2L_6026065_DEL [dm3] 2L_6026065_DEL [dm6]	TT	T	2.321e^-4	0.687	INTRON CG9109
2R	15967337	2R_15967337_SNP [dm3] 2R_20079832_SNP [dm6]	G	A	2.322e^-4	0.687	INTERGENIC
X	15679626	X_15679626_SNP [dm3] X_15785593_SNP [dm6]	T	C	2.327e^-4	0.687	UPSTREAM mRpS30 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23180856	3R_23180856_SNP [dm3] 3R_27355134_SNP [dm6]	G	C	2.330e^-4	0.687	INTRON CG42534
2L	2339654	2L_2339654_SNP [dm3] 2L_2339654_SNP [dm6]	T	A	2.332e^-4	0.687	SYNONYMOUS_CODING eys INTRON CG9967
3R	25483333	3R_25483333_SNP [dm3] 3R_29657611_SNP [dm6]	G	C	2.349e^-4	0.687	INTRON Dop1R2
3R	20103623	3R_20103623_SNP [dm3] 3R_24277901_SNP [dm6]	C	G	2.353e^-4	0.687	SYNONYMOUS_CODING Orct	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8187909	2R_8187909_SNP [dm3] 2R_12300404_SNP [dm6]	C	T	2.353e^-4	0.687	SYNONYMOUS_CODING CG8850 UTR_3_PRIME CG42700	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	22136800	X_22136800_SNP [dm3] X_22734964_SNP [dm6]	T	A	2.354e^-4	0.687	INTRON CR44997
2R	17209296	2R_17209296_SNP [dm3] 2R_21321791_SNP [dm6]	C	A	2.359e^-4	0.687	INTRON CG30394
3L	3244474	3L_3244474_SNP [dm3] 3L_3244474_SNP [dm6]	G	C	2.361e^-4	0.687	UPSTREAM CR45424 & 1 other INTERGENIC
X	2776016	X_2776016_SNP [dm3] X_2881983_SNP [dm6]	C	T	2.366e^-4	0.687	DOWNSTREAM CG14418 INTRON kirre	TF binding site BDTNP1_TFBS_dl
3R	5095702	3R_5095702_SNP [dm3] 3R_9269980_SNP [dm6]	G	T	2.371e^-4	0.687	NON_SYNONYMOUS_CODING Vps16A
3L	11051174	3L_11051174_SNP [dm3] 3L_11058074_SNP [dm6]	T	C	2.372e^-4	0.687	SYNONYMOUS_CODING CG7888	TF binding site mE1_TFBS_cad
3L	18288212	3L_18288212_DEL [dm3] 3L_18295112_DEL [dm6]	GG	G	2.379e^-4	0.687	UPSTREAM CG5103 INTRON CR43306	TF binding site mE1_TFBS_Kr
2L	5491934	2L_5491934_SNP [dm3] 2L_5491934_SNP [dm6]	G	T	2.380e^-4	0.687	INTERGENIC
2R	12837040	2R_12837040_SNP [dm3] 2R_16949535_SNP [dm6]	A	T	2.380e^-4	0.687	SYNONYMOUS_CODING mute	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26870458	3R_26870458_SNP [dm3] 3R_31044736_SNP [dm6]	A	G	2.382e^-4	0.687	SYNONYMOUS_CODING CG33920 INTRON CanA1
X	4236963	X_4236963_SNP [dm3] X_4342930_SNP [dm6]	T	A	2.403e^-4	0.687	INTRON norpA
3R	8485694	3R_8485694_SNP [dm3] 3R_12659972_SNP [dm6]	C	A	2.410e^-4	0.687	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
3R	16282186	3R_16282186_SNP [dm3] 3R_20456464_SNP [dm6]	A	C	2.413e^-4	0.687	INTRON Gfrl
2L	12718335	2L_12718335_SNP [dm3] 2L_12718335_SNP [dm6]	A	G	2.424e^-4	0.687	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
3R	20296510	3R_20296510_SNP [dm3] 3R_24470788_SNP [dm6]	A	C	2.425e^-4	0.687	DOWNSTREAM CG31128 INTERGENIC
2L	15309494	2L_15309494_SNP [dm3] 2L_15309494_SNP [dm6]	T	A	2.435e^-4	0.687	INTERGENIC
2R	2058934	2R_2058934_SNP [dm3] 2R_6171429_SNP [dm6]	A	G	2.436e^-4	0.687	UPSTREAM tRNA:CR30316 DOWNSTREAM tRNA:K2:42Ad INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6444577	X_6444577_INS [dm3] X_6550544_INS [dm6]	A	AAAGAGT	2.440e^-4	0.687	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
3R	13700113	3R_13700113_SNP [dm3] 3R_17874391_SNP [dm6]	T	C	2.449e^-4	0.687	UTR_3_PRIME Rim DOWNSTREAM Rim
3R	15453712	3R_15453712_DEL [dm3] 3R_19627990_DEL [dm6]	TTC	T	2.450e^-4	0.687	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
X	7552849	X_7552849_INS [dm3] X_7658816_INS [dm6]	A	AA	2.450e^-4	0.687	INTRON ct
2L	606986	2L_606986_SNP [dm3] 2L_606986_SNP [dm6]	A	G	2.451e^-4	0.687	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	19092722	3L_19092722_SNP [dm3] 3L_19099622_SNP [dm6]	G	T	2.459e^-4	0.687	SYNONYMOUS_CODING Gem2 DOWNSTREAM CG14079	TF binding site mE1_TFBS_cad
3R	23308671	3R_23308671_SNP [dm3] 3R_27482949_SNP [dm6]	C	G	2.460e^-4	0.687	DOWNSTREAM Cyp6a18 INTERGENIC
3L	9333455	3L_9333455_SNP [dm3] 3L_9340355_SNP [dm6]	G	T	2.462e^-4	0.687	UPSTREAM PGRP-LC INTRON PGRP-LC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11047668	2L_11047668_SNP [dm3] 2L_11047668_SNP [dm6]	T	A	2.462e^-4	0.687	INTRON Samuel
2R	13540910	2R_13540910_SNP [dm3] 2R_17653405_SNP [dm6]	A	G	2.477e^-4	0.687	INTRON CCHa1-R
2L	10111191	2L_10111191_SNP [dm3] 2L_10111191_SNP [dm6]	G	T	2.479e^-4	0.687	INTRON CG44153 & 1 other
X	5051251	X_5051251_SNP [dm3] X_5157218_SNP [dm6]	G	A	2.480e^-4	0.687	INTRON rg & 1 other
3R	18653664	3R_18653664_SNP [dm3] 3R_22827942_SNP [dm6]	C	T	2.480e^-4	0.687	UPSTREAM CR44350 INTERGENIC
2L	2815957	2L_2815957_SNP [dm3] 2L_2815957_SNP [dm6]	G	A	2.481e^-4	0.687	UPSTREAM CG15400 DOWNSTREAM Duox INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9909234	3L_9909234_SNP [dm3] 3L_9916134_SNP [dm6]	T	G	2.481e^-4	0.687	INTRON CG34356	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	8388944	3L_8388944_SNP [dm3] 3L_8395844_SNP [dm6]	A	T	2.482e^-4	0.687	UPSTREAM CG7120 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	21266297	3L_21266297_SNP [dm3] 3L_21273197_SNP [dm6]	G	A	2.486e^-4	0.687	SYNONYMOUS_CODING AcCoAS	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22543921	3R_22543921_INS [dm3] 3R_26718199_INS [dm6]	A	AA	2.489e^-4	0.687	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18729455	3R_18729455_SNP [dm3] 3R_22903733_SNP [dm6]	G	T	2.499e^-4	0.687	INTRON klg	TF binding site mE1_TFBS_chinmo
2L	17550678	2L_17550678_SNP [dm3] 2L_17550678_SNP [dm6]	T	A	2.500e^-4	0.687	INTERGENIC
2L	12772738	2L_12772738_SNP [dm3] 2L_12772738_SNP [dm6]	G	T	2.505e^-4	0.687	INTERGENIC
3L	5639800	3L_5639800_SNP [dm3] 3L_5646700_SNP [dm6]	A	G	2.512e^-4	0.687	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6855346	3L_6855346_SNP [dm3] 3L_6862246_SNP [dm6]	A	T	2.514e^-4	0.687	INTERGENIC
3L	17768735	3L_17768735_SNP [dm3] 3L_17775635_SNP [dm6]	C	T	2.516e^-4	0.687	INTERGENIC
3L	8212690	3L_8212690_DEL [dm3] 3L_8219590_DEL [dm6]	TT	T	2.523e^-4	0.687	UPSTREAM CG13674 INTERGENIC
3R	15680279	3R_15680279_SNP [dm3] 3R_19854557_SNP [dm6]	A	G	2.526e^-4	0.687	SYNONYMOUS_CODING Ire1 DOWNSTREAM CG4662	TF binding site mE1_TFBS_cad
3R	15453633	3R_15453633_DEL [dm3] 3R_19627911_DEL [dm6]	TCAT	T	2.532e^-4	0.687	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
3L	7732189	3L_7732189_SNP [dm3] 3L_7739089_SNP [dm6]	C	T	2.533e^-4	0.687	INTRON CG32373 & 1 other
X	4333777	X_4333777_SNP [dm3] X_4439744_SNP [dm6]	G	A	2.549e^-4	0.687	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	12898121	2L_12898121_SNP [dm3] 2L_12898121_SNP [dm6]	A	C	2.552e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12798904	2L_12798904_SNP [dm3] 2L_12798904_SNP [dm6]	C	T	2.553e^-4	0.687	INTERGENIC
3L	13034928	3L_13034928_SNP [dm3] 3L_13041828_SNP [dm6]	C	T	2.554e^-4	0.687	UTR_5_PRIME RpS4 UPSTREAM snoRNA:Psi28S-3327a DOWNSTREAM SRm160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	11477809	3L_11477809_SNP [dm3] 3L_11484709_SNP [dm6]	G	A	2.559e^-4	0.687	INTERGENIC
X	21339548	X_21339548_INS [dm3] X_21468521_INS [dm6]	T	TT	2.564e^-4	0.687	UPSTREAM CR45507 & 1 other INTERGENIC
2R	16811918	2R_16811918_SNP [dm3] 2R_20924413_SNP [dm6]	G	A	2.567e^-4	0.687	INTRON Rx
3R	9006684	3R_9006684_SNP [dm3] 3R_13180962_SNP [dm6]	A	T	2.569e^-4	0.687	UPSTREAM CG8138 INTERGENIC
X	4434730	X_4434730_SNP [dm3] X_4540697_SNP [dm6]	T	C	2.569e^-4	0.687	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	10534270	2L_10534270_SNP [dm3] 2L_10534270_SNP [dm6]	T	C	2.571e^-4	0.687	UPSTREAM CG18302 DOWNSTREAM CG18301 INTERGENIC
2R	2051501	2R_2051501_SNP [dm3] 2R_6163996_SNP [dm6]	A	G	2.573e^-4	0.687	DOWNSTREAM tRNA:K2:42Ab INTRON EcR	transposable element FlyBase
3R	15266244	3R_15266244_SNP [dm3] 3R_19440522_SNP [dm6]	T	C	2.579e^-4	0.687	INTRON CG31221
X	2218147	X_2218147_SNP [dm3] X_2324114_SNP [dm6]	G	A	2.583e^-4	0.687	DOWNSTREAM CG14050 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12885123	2L_12885123_SNP [dm3] 2L_12885123_SNP [dm6]	T	C	2.588e^-4	0.687	INTERGENIC
X	16811044	X_16811044_SNP [dm3] X_16917011_SNP [dm6]	G	A	2.593e^-4	0.687	INTRON CG4928	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	3359144	3L_3359144_SNP [dm3] 3L_3359144_SNP [dm6]	A	T	2.596e^-4	0.687	NON_SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6380353	2L_6380353_SNP [dm3] 2L_6380353_SNP [dm6]	A	T	2.596e^-4	0.687	UPSTREAM CG9507 INTRON CG42368
3L	2749901	3L_2749901_SNP [dm3] 3L_2749901_SNP [dm6]	T	A	2.602e^-4	0.687	INTRON Mrtf
2R	12708244	2R_12708244_SNP [dm3] 2R_16820739_SNP [dm6]	C	T	2.605e^-4	0.687	INTERGENIC
3L	9873289	3L_9873289_SNP [dm3] 3L_9880189_SNP [dm6]	C	A	2.609e^-4	0.687	INTRON CG34382	TF binding site mE1_TFBS_chinmo
2L	12901084	2L_12901084_DEL [dm3] 2L_12901084_DEL [dm6]	ACGG	A	2.614e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15453705	3R_15453705_DEL [dm3] 3R_19627983_DEL [dm6]	ATCCT	A	2.615e^-4	0.687	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
X	16164514	X_16164514_SNP [dm3] X_16270481_SNP [dm6]	A	G	2.616e^-4	0.687	SYNONYMOUS_CODING kat80 UPSTREAM Mfe2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13541323	2R_13541323_SNP [dm3] 2R_17653818_SNP [dm6]	C	T	2.618e^-4	0.687	INTRON CCHa1-R
3R	18656070	3R_18656070_SNP [dm3] 3R_22830348_SNP [dm6]	C	T	2.620e^-4	0.687	INTERGENIC
X	4237082	X_4237082_SNP [dm3] X_4343049_SNP [dm6]	T	A	2.623e^-4	0.687	INTRON norpA
X	12808066	X_12808066_INS [dm3] X_12914033_INS [dm6]	C	CC	2.623e^-4	0.687	UPSTREAM CR45626 INTERGENIC
3R	26870329	3R_26870329_SNP [dm3] 3R_31044607_SNP [dm6]	G	A	2.625e^-4	0.687	SYNONYMOUS_CODING CG33920 INTRON CanA1
3R	6269628	3R_6269628_SNP [dm3] 3R_10443906_SNP [dm6]	C	A	2.628e^-4	0.687	INTERGENIC
3L	7400401	3L_7400401_SNP [dm3] 3L_7407301_SNP [dm6]	G	A	2.632e^-4	0.687	DOWNSTREAM pncr015:3L INTERGENIC
3R	2792702	3R_2792702_SNP [dm3] 3R_6966980_SNP [dm6]	T	G	2.639e^-4	0.687	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6445121	X_6445121_SNP [dm3] X_6551088_SNP [dm6]	A	C	2.641e^-4	0.687	INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17511458	2R_17511458_SNP [dm3] 2R_21623953_SNP [dm6]	G	C	2.645e^-4	0.687	SYNONYMOUS_CODING PTP-ER	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	9463274	X_9463274_SNP [dm3] X_9569241_SNP [dm6]	C	T	2.645e^-4	0.687	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17518021	2L_17518021_SNP [dm3] 2L_17518021_SNP [dm6]	C	A	2.646e^-4	0.687	INTRON Dhc36C
2L	5465674	2L_5465674_SNP [dm3] 2L_5465674_SNP [dm6]	A	T	2.646e^-4	0.687	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3R	19226720	3R_19226720_SNP [dm3] 3R_23400998_SNP [dm6]	G	A	2.647e^-4	0.687	INTERGENIC
3L	11861920	3L_11861920_DEL [dm3] 3L_11868820_DEL [dm6]	CTTAC	C	2.654e^-4	0.687	INTRON CG44837
3L	7446136	3L_7446136_DEL [dm3] 3L_7453036_DEL [dm6]	ATGCCACAGA	A	2.658e^-4	0.687	CODON_DELETION CG42458 DOWNSTREAM CG33278	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2048544	2R_2048544_SNP [dm3] 2R_6161039_SNP [dm6]	C	T	2.662e^-4	0.687	UPSTREAM tRNA:R2:42Ac DOWNSTREAM tRNA:N5:42Ac INTRON EcR	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	10088353	2L_10088353_SNP [dm3] 2L_10088353_SNP [dm6]	C	G	2.668e^-4	0.687	INTRON CG44153	TF binding site BDTNP1_TFBS_twi
3R	10225113	3R_10225113_SNP [dm3] 3R_14399391_SNP [dm6]	T	C	2.673e^-4	0.687	INTRON cv-c
3R	3597906	3R_3597906_SNP [dm3] 3R_7772184_SNP [dm6]	T	A	2.676e^-4	0.687	UPSTREAM CG11286 INTERGENIC
2R	18235346	2R_18235346_SNP [dm3] 2R_22347841_SNP [dm6]	G	T	2.682e^-4	0.687	UPSTREAM CG11298 INTRON Liprin-gamma
2L	12089849	2L_12089849_SNP [dm3] 2L_12089849_SNP [dm6]	C	G	2.686e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10567322	3L_10567322_SNP [dm3] 3L_10574222_SNP [dm6]	A	C	2.686e^-4	0.687	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna
3L	16822262	3L_16822262_SNP [dm3] 3L_16829162_SNP [dm6]	C	T	2.694e^-4	0.687	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
X	12968671	X_12968671_SNP [dm3] X_13074638_SNP [dm6]	T	C	2.699e^-4	0.687	INTRON rad
3L	22602033	3L_22602033_SNP [dm3] 3L_22608933_SNP [dm6]	G	T	2.701e^-4	0.687	INTRON CG14459
2L	12721435	2L_12721435_SNP [dm3] 2L_12721435_SNP [dm6]	A	G	2.701e^-4	0.687	UPSTREAM MRP INTRON CG5792 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	14808806	X_14808806_SNP [dm3] X_14914773_SNP [dm6]	C	T	2.702e^-4	0.687	UPSTREAM CG12398 INTRON Flo2
2R	13540793	2R_13540793_SNP [dm3] 2R_17653288_SNP [dm6]	T	C	2.703e^-4	0.687	INTRON CCHa1-R
3R	20560345	3R_20560345_SNP [dm3] 3R_24734623_SNP [dm6]	T	A	2.704e^-4	0.687	INTRON tok
X	18730160	X_18730160_SNP [dm3] X_18836127_SNP [dm6]	G	T	2.704e^-4	0.687	INTRON Pvf1
2L	13251978	2L_13251978_SNP [dm3] 2L_13251978_SNP [dm6]	G	C	2.707e^-4	0.687	UTR_5_PRIME CG31728
2R	16389132	2R_16389132_SNP [dm3] 2R_20501627_SNP [dm6]	C	T	2.717e^-4	0.687	INTERGENIC	regulatory region REDfly_CRMs
3L	11314124	3L_11314124_SNP [dm3] 3L_11321024_SNP [dm6]	G	C	2.718e^-4	0.687	SYNONYMOUS_CODING CG6168
3L	9616563	3L_9616563_SNP [dm3] 3L_9623463_SNP [dm6]	C	A	2.720e^-4	0.687	UTR_3_PRIME LanB2 UPSTREAM CG3335	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23319168	3R_23319168_SNP [dm3] 3R_27493446_SNP [dm6]	C	T	2.725e^-4	0.687	INTERGENIC
2R	17285529	2R_17285529_SNP [dm3] 2R_21398024_SNP [dm6]	A	G	2.740e^-4	0.687	INTRON Sdc
3R	25094417	3R_25094417_SNP [dm3] 3R_29268695_SNP [dm6]	A	C	2.743e^-4	0.687	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12249019	2L_12249019_SNP [dm3] 2L_12249019_SNP [dm6]	C	T	2.744e^-4	0.687	INTRON aret
X	2830192	X_2830192_SNP [dm3] X_2936159_SNP [dm6]	A	G	2.750e^-4	0.687	UPSTREAM CG3598 DOWNSTREAM CG3592 INTRON kirre
3L	14210684	3L_14210684_SNP [dm3] 3L_14217584_SNP [dm6]	C	A	2.757e^-4	0.687	UPSTREAM CG7768 INTRON nuf
3L	8647655	3L_8647655_SNP [dm3] 3L_8654555_SNP [dm6]	A	G	2.770e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
X	8452072	X_8452072_SNP [dm3] X_8558039_SNP [dm6]	T	C	2.778e^-4	0.687	SYNONYMOUS_CODING IntS4 DOWNSTREAM CG12112	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16402754	2L_16402754_SNP [dm3] 2L_16402754_SNP [dm6]	A	C	2.778e^-4	0.687	INTRON CG5888
X	16429268	X_16429268_INS [dm3] X_16535235_INS [dm6]	A	AGCCATCTACTCCAAATATA...	2.785e^-4	0.687	INTERGENIC
2R	17182549	2R_17182549_SNP [dm3] 2R_21295044_SNP [dm6]	T	G	2.793e^-4	0.687	SYNONYMOUS_CODING CG9752 UPSTREAM CG42672 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	18418964	X_18418964_SNP [dm3] X_18524931_SNP [dm6]	T	G	2.794e^-4	0.687	INTRON Bx
2R	7295641	2R_7295641_SNP [dm3] 2R_11408136_SNP [dm6]	A	T	2.796e^-4	0.687	DOWNSTREAM CG30026 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2R	9677870	2R_9677870_SNP [dm3] 2R_13790365_SNP [dm6]	C	G	2.796e^-4	0.687	INTERGENIC
2L	12897784	2L_12897784_SNP [dm3] 2L_12897784_SNP [dm6]	G	A	2.796e^-4	0.687	INTERGENIC
2L	12897786	2L_12897786_SNP [dm3] 2L_12897786_SNP [dm6]	G	A	2.796e^-4	0.687	INTERGENIC
2R	17209028	2R_17209028_SNP [dm3] 2R_21321523_SNP [dm6]	T	A	2.800e^-4	0.687	SYNONYMOUS_CODING CG30394
2R	17209061	2R_17209061_SNP [dm3] 2R_21321556_SNP [dm6]	A	T	2.800e^-4	0.687	SYNONYMOUS_CODING CG30394
2R	17209277	2R_17209277_SNP [dm3] 2R_21321772_SNP [dm6]	A	T	2.800e^-4	0.687	INTRON CG30394
3R	26647722	3R_26647722_SNP [dm3] 3R_30822000_SNP [dm6]	G	A	2.801e^-4	0.687	UPSTREAM cindr INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16279471	3R_16279471_SNP [dm3] 3R_20453749_SNP [dm6]	C	A	2.804e^-4	0.687	INTRON Gfrl
3R	18476228	3R_18476228_DEL [dm3] 3R_22650506_DEL [dm6]	TT	T	2.806e^-4	0.687	INTRON CG45058
3R	18648848	3R_18648848_SNP [dm3] 3R_22823126_SNP [dm6]	T	C	2.808e^-4	0.687	DOWNSTREAM CR44350 INTERGENIC
3L	9606367	3L_9606367_SNP [dm3] 3L_9613267_SNP [dm6]	C	G	2.809e^-4	0.687	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo
2L	10534268	2L_10534268_SNP [dm3] 2L_10534268_SNP [dm6]	C	A	2.809e^-4	0.687	UPSTREAM CG18302 DOWNSTREAM CG18301 INTERGENIC
3R	20257494	3R_20257494_SNP [dm3] 3R_24431772_SNP [dm6]	T	G	2.810e^-4	0.687	INTRON nAChRalpha1
3L	8215264	3L_8215264_SNP [dm3] 3L_8222164_SNP [dm6]	T	C	2.810e^-4	0.687	UTR_5_PRIME CG13678
3L	10561289	3L_10561289_SNP [dm3] 3L_10568189_SNP [dm6]	C	G	2.819e^-4	0.687	NON_SYNONYMOUS_CODING A2bp1 INTRON A2bp1
3L	9704278	3L_9704278_SNP [dm3] 3L_9711178_SNP [dm6]	T	A	2.821e^-4	0.687	DOWNSTREAM CG16711 INTRON SH3PX1
X	16836532	X_16836532_SNP [dm3] X_16942499_SNP [dm6]	C	T	2.822e^-4	0.687	SYNONYMOUS_CODING CG13001 UPSTREAM RhoGAP15B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9762591	2R_9762591_SNP [dm3] 2R_13875086_SNP [dm6]	C	A	2.835e^-4	0.687	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	6837445	3L_6837445_INS [dm3] 3L_6844345_INS [dm6]	C	CAGGTTCGTC	2.837e^-4	0.687	INTERGENIC
2R	14443323	2R_14443323_SNP [dm3] 2R_18555818_SNP [dm6]	C	T	2.843e^-4	0.687	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso
3R	17157952	3R_17157952_SNP [dm3] 3R_21332230_SNP [dm6]	G	T	2.848e^-4	0.687	INTRON CG16791	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9158203	2R_9158203_SNP [dm3] 2R_13270698_SNP [dm6]	T	G	2.855e^-4	0.687	INTRON Dh31-R
2L	12799618	2L_12799618_SNP [dm3] 2L_12799618_SNP [dm6]	A	G	2.857e^-4	0.687	INTERGENIC
2L	4722850	2L_4722850_SNP [dm3] 2L_4722850_SNP [dm6]	T	A	2.862e^-4	0.687	DOWNSTREAM CG34351 INTERGENIC
3R	25594793	3R_25594793_SNP [dm3] 3R_29769071_SNP [dm6]	T	G	2.866e^-4	0.687	INTRON kay
2L	14447084	2L_14447084_SNP [dm3] 2L_14447084_SNP [dm6]	T	A	2.868e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7295645	2R_7295645_SNP [dm3] 2R_11408140_SNP [dm6]	C	T	2.877e^-4	0.687	DOWNSTREAM CG30026 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
X	5331139	X_5331139_SNP [dm3] X_5437106_SNP [dm6]	G	A	2.880e^-4	0.687	INTERGENIC
2L	9363096	2L_9363096_SNP [dm3] 2L_9363096_SNP [dm6]	G	A	2.882e^-4	0.687	INTERGENIC
2L	12898049	2L_12898049_SNP [dm3] 2L_12898049_SNP [dm6]	T	C	2.882e^-4	0.687	INTERGENIC
2R	2059639	2R_2059639_SNP [dm3] 2R_6172134_SNP [dm6]	C	G	2.885e^-4	0.687	UPSTREAM tRNA:K2:42Ad DOWNSTREAM tRNA:CR30316 INTERGENIC	regulatory region REDfly_CRMs
3L	18565983	3L_18565983_SNP [dm3] 3L_18572883_SNP [dm6]	A	T	2.890e^-4	0.687	INTRON AstC-R1
2L	14003238	2L_14003238_SNP [dm3] 2L_14003238_SNP [dm6]	T	G	2.890e^-4	0.687	INTERGENIC
X	16415162	X_16415162_SNP [dm3] X_16521129_SNP [dm6]	G	A	2.890e^-4	0.687	INTRON para
3R	13639765	3R_13639765_SNP [dm3] 3R_17814043_SNP [dm6]	A	G	2.893e^-4	0.687	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13544320	2R_13544320_SNP [dm3] 2R_17656815_SNP [dm6]	G	A	2.896e^-4	0.687	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi
2L	2180196	2L_2180196_SNP [dm3] 2L_2180196_SNP [dm6]	T	C	2.897e^-4	0.687	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19160188	X_19160188_SNP [dm3] X_19266155_SNP [dm6]	A	T	2.898e^-4	0.687	DOWNSTREAM CG8010 INTRON Vav
3R	16282080	3R_16282080_SNP [dm3] 3R_20456358_SNP [dm6]	A	C	2.903e^-4	0.687	INTRON Gfrl
2R	2064690	2R_2064690_SNP [dm3] 2R_6177185_SNP [dm6]	T	A	2.906e^-4	0.687	DOWNSTREAM Cyp6w1 INTERGENIC	regulatory region REDfly_CRMs
3R	843811	3R_843811_SNP [dm3] 3R_5018089_SNP [dm6]	T	A	2.910e^-4	0.687	INTRON CR45585	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2036973	2R_2036973_SNP [dm3] 2R_6149468_SNP [dm6]	C	G	2.914e^-4	0.687	INTRON EcR
X	17433746	X_17433746_SNP [dm3] X_17539713_SNP [dm6]	C	T	2.916e^-4	0.687	INTRON CG43658
2R	9264384	2R_9264384_SNP [dm3] 2R_13376879_SNP [dm6]	A	G	2.917e^-4	0.687	SYNONYMOUS_CODING CG10814	TF binding site mE1_TFBS_chinmo
2L	5228454	2L_5228454_SNP [dm3] 2L_5228454_SNP [dm6]	A	T	2.921e^-4	0.687	INTRON tkv
3L	6848622	3L_6848622_DEL [dm3] 3L_6855522_DEL [dm6]	GG	C	2.921e^-4	0.687	INTERGENIC
3R	6363857	3R_6363857_SNP [dm3] 3R_10538135_SNP [dm6]	A	C	2.923e^-4	0.687	INTRON hth	enhancer mE1_CBP_Enhancers
2R	1871122	2R_1871122_SNP [dm3] 2R_5983617_SNP [dm6]	A	T	2.923e^-4	0.687	INTRON Src42A
3L	5389944	3L_5389944_SNP [dm3] 3L_5396844_SNP [dm6]	A	G	2.927e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13353530	2L_13353530_SNP [dm3] 2L_13353530_SNP [dm6]	A	C	2.929e^-4	0.687	INTRON CG9395
2L	13353533	2L_13353533_SNP [dm3] 2L_13353533_SNP [dm6]	A	T	2.929e^-4	0.687	INTRON CG9395
2R	18235659	2R_18235659_SNP [dm3] 2R_22348154_SNP [dm6]	G	A	2.929e^-4	0.687	UPSTREAM CG11298 INTRON Liprin-gamma
2L	1165593	2L_1165593_SNP [dm3] 2L_1165593_SNP [dm6]	C	A	2.937e^-4	0.687	SYNONYMOUS_CODING IntS14 UPSTREAM CG14341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14808147	X_14808147_SNP [dm3] X_14914114_SNP [dm6]	A	C	2.941e^-4	0.687	UPSTREAM CG12398 INTRON Flo2
2R	11918044	2R_11918044_SNP [dm3] 2R_16030539_SNP [dm6]	G	A	2.946e^-4	0.687	DOWNSTREAM CG8401 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	13524091	3R_13524091_SNP [dm3] 3R_17698369_SNP [dm6]	C	T	2.951e^-4	0.687	SYNONYMOUS_CODING osa	TF binding site mE1_TFBS_chinmo
2R	2078593	2R_2078593_SNP [dm3] 2R_6191088_SNP [dm6]	G	A	2.952e^-4	0.687	UPSTREAM tRNA:N5:42Ae DOWNSTREAM tRNA:N5:42Ad INTRON Ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	8559535	X_8559535_SNP [dm3] X_8665502_SNP [dm6]	A	C	2.952e^-4	0.687	INTERGENIC
X	7912998	X_7912998_SNP [dm3] X_8018965_SNP [dm6]	G	T	2.952e^-4	0.687	DOWNSTREAM CG15333 INTRON Tbh
2R	8895845	2R_8895845_SNP [dm3] 2R_13008340_SNP [dm6]	A	T	2.956e^-4	0.687	DOWNSTREAM Su_z_2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14572706	2R_14572706_SNP [dm3] 2R_18685201_SNP [dm6]	C	T	2.963e^-4	0.687	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12892575	2L_12892575_SNP [dm3] 2L_12892575_SNP [dm6]	G	A	2.966e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14536753	3R_14536753_SNP [dm3] 3R_18711031_SNP [dm6]	G	A	2.971e^-4	0.687	INTRON VAChT & 1 other
2L	6227764	2L_6227764_SNP [dm3] 2L_6227764_SNP [dm6]	A	C	2.979e^-4	0.687	DOWNSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4551856	3L_4551856_SNP [dm3] 3L_4551856_SNP [dm6]	T	G	2.980e^-4	0.687	SYNONYMOUS_CODING CG11357	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	20011567	X_20011567_SNP [dm3] X_20117534_SNP [dm6]	C	A	2.980e^-4	0.687	INTERGENIC
3L	10603349	3L_10603349_DEL [dm3] 3L_10610249_DEL [dm6]	AAAATACTTAAG...	A	2.981e^-4	0.687	INTERGENIC
X	18561216	X_18561216_SNP [dm3] X_18667183_SNP [dm6]	G	C	2.985e^-4	0.687	DOWNSTREAM CR45514 INTERGENIC
3L	5639395	3L_5639395_SNP [dm3] 3L_5646295_SNP [dm6]	C	T	2.987e^-4	0.687	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9661252	3L_9661252_SNP [dm3] 3L_9668152_SNP [dm6]	A	G	2.997e^-4	0.687	SYNONYMOUS_CODING fry
X	13348029	X_13348029_SNP [dm3] X_13453996_SNP [dm6]	T	A	3.003e^-4	0.687	INTRON Neto
3R	2780810	3R_2780810_SNP [dm3] 3R_6955088_SNP [dm6]	C	T	3.006e^-4	0.687	INTRON Antp
2L	20550001	2L_20550001_SNP [dm3] 2L_20550001_SNP [dm6]	T	C	3.006e^-4	0.687	INTERGENIC
X	16997266	X_16997266_SNP [dm3] X_17103233_SNP [dm6]	G	C	3.007e^-4	0.687	SYNONYMOUS_CODING CG4991
2L	12773674	2L_12773674_SNP [dm3] 2L_12773674_SNP [dm6]	G	T	3.009e^-4	0.687	INTERGENIC
2L	12896055	2L_12896055_SNP [dm3] 2L_12896055_SNP [dm6]	C	T	3.012e^-4	0.687	INTERGENIC
2L	9188852	2L_9188852_SNP [dm3] 2L_9188852_SNP [dm6]	A	T	3.027e^-4	0.687	INTRON tai
3R	23840570	3R_23840570_SNP [dm3] 3R_28014848_SNP [dm6]	A	T	3.031e^-4	0.687	INTERGENIC
X	18036925	X_18036925_SNP [dm3] X_18142892_SNP [dm6]	G	A	3.043e^-4	0.687	INTERGENIC
X	20011750	X_20011750_SNP [dm3] X_20117717_SNP [dm6]	T	C	3.046e^-4	0.687	INTERGENIC
2L	3698448	2L_3698448_SNP [dm3] 2L_3698448_SNP [dm6]	G	T	3.049e^-4	0.687	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
3R	24605213	3R_24605213_SNP [dm3] 3R_28779491_SNP [dm6]	G	T	3.054e^-4	0.687	INTERGENIC
2R	16827019	2R_16827019_SNP [dm3] 2R_20939514_SNP [dm6]	C	A	3.057e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12773075	2L_12773075_SNP [dm3] 2L_12773075_SNP [dm6]	G	A	3.059e^-4	0.687	INTERGENIC
2R	12319622	2R_12319622_SNP [dm3] 2R_16432117_SNP [dm6]	A	G	3.075e^-4	0.687	UPSTREAM CG4398 DOWNSTREAM Sema-2b INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3607297	2L_3607297_SNP [dm3] 2L_3607297_SNP [dm6]	G	A	3.077e^-4	0.687	UPSTREAM odd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	15959547	2L_15959547_SNP [dm3] 2L_15959547_SNP [dm6]	A	T	3.083e^-4	0.687	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
X	16408925	X_16408925_SNP [dm3] X_16514892_SNP [dm6]	T	C	3.095e^-4	0.687	INTRON para
3R	16755248	3R_16755248_SNP [dm3] 3R_20929526_SNP [dm6]	C	T	3.097e^-4	0.687	DOWNSTREAM hdly INTRON CG31191
2L	19057684	2L_19057684_SNP [dm3] 2L_19057684_SNP [dm6]	C	A	3.097e^-4	0.687	UTR_3_PRIME CG10492	TF binding site mE1_TFBS_cad
3L	14075204	3L_14075204_SNP [dm3] 3L_14082104_SNP [dm6]	T	A	3.105e^-4	0.687	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20029875	2L_20029875_SNP [dm3] 2L_20029875_SNP [dm6]	A	T	3.111e^-4	0.687	INTRON sNPF
3R	16304247	3R_16304247_SNP [dm3] 3R_20478525_SNP [dm6]	A	G	3.112e^-4	0.687	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11530189	3R_11530189_SNP [dm3] 3R_15704467_SNP [dm6]	T	C	3.121e^-4	0.687	UPSTREAM CG5404 INTERGENIC
3R	18654304	3R_18654304_SNP [dm3] 3R_22828582_SNP [dm6]	A	G	3.122e^-4	0.687	INTERGENIC
3L	10603197	3L_10603197_SNP [dm3] 3L_10610097_SNP [dm6]	G	A	3.126e^-4	0.687	INTERGENIC
3L	10603303	3L_10603303_SNP [dm3] 3L_10610203_SNP [dm6]	T	A	3.126e^-4	0.687	INTERGENIC
2L	4365663	2L_4365663_SNP [dm3] 2L_4365663_SNP [dm6]	C	T	3.127e^-4	0.687	INTRON Traf4	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	10084229	X_10084229_SNP [dm3] X_10190196_SNP [dm6]	T	A	3.128e^-4	0.687	INTRON CR44894 & 1 other
2L	6566668	2L_6566668_SNP [dm3] 2L_6566668_SNP [dm6]	T	C	3.130e^-4	0.687	UPSTREAM CG13766 INTERGENIC
X	4573812	X_4573812_SNP [dm3] X_4679779_SNP [dm6]	C	T	3.130e^-4	0.687	UPSTREAM rap DOWNSTREAM Pp2C1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	6444452	X_6444452_SNP [dm3] X_6550419_SNP [dm6]	C	T	3.135e^-4	0.687	INTRON CG34417	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	19058079	2L_19058079_SNP [dm3] 2L_19058079_SNP [dm6]	G	T	3.138e^-4	0.687	UTR_3_PRIME CG10492	TF binding site mE1_TFBS_cad
2L	7392892	2L_7392892_SNP [dm3] 2L_7392892_SNP [dm6]	T	A	3.143e^-4	0.687	INTRON CG5160
3R	15032836	3R_15032836_SNP [dm3] 3R_19207114_SNP [dm6]	C	T	3.144e^-4	0.687	INTERGENIC
3L	9615144	3L_9615144_SNP [dm3] 3L_9622044_SNP [dm6]	A	G	3.144e^-4	0.687	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
2R	13674334	2R_13674334_SNP [dm3] 2R_17786829_SNP [dm6]	G	C	3.149e^-4	0.687	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
X	12988046	X_12988046_SNP [dm3] X_13094013_SNP [dm6]	T	C	3.154e^-4	0.687	UPSTREAM CG2200 DOWNSTREAM lic INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2180212	2L_2180212_SNP [dm3] 2L_2180212_SNP [dm6]	A	T	3.158e^-4	0.687	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6456092	3L_6456092_SNP [dm3] 3L_6462992_SNP [dm6]	A	T	3.162e^-4	0.687	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
2L	14447082	2L_14447082_INS [dm3] 2L_14447082_INS [dm6]	C	CGA	3.167e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14447085	2L_14447085_SNP [dm3] 2L_14447085_SNP [dm6]	T	A	3.167e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14447089	2L_14447089_SNP [dm3] 2L_14447089_SNP [dm6]	T	G	3.167e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7295555	3R_7295555_SNP [dm3] 3R_11469833_SNP [dm6]	A	G	3.168e^-4	0.687	INTERGENIC
3R	25138893	3R_25138893_SNP [dm3] 3R_29313171_SNP [dm6]	G	C	3.181e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19599999	2R_19599999_SNP [dm3] 2R_23712476_SNP [dm6]	T	C	3.183e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3L	2880017	3L_2880017_SNP [dm3] 3L_2880017_SNP [dm6]	C	T	3.185e^-4	0.687	UPSTREAM CG43444 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11059940	3L_11059940_SNP [dm3] 3L_11066840_SNP [dm6]	A	C	3.185e^-4	0.687	NON_SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
2R	15400840	2R_15400840_SNP [dm3] 2R_19513335_SNP [dm6]	G	A	3.187e^-4	0.687	SYNONYMOUS_CODING Ir56d
3L	9615870	3L_9615870_INS [dm3] 3L_9622770_INS [dm6]	C	CTC	3.188e^-4	0.687	INTRON LanB2	TF binding site mE1_TFBS_cad
2R	7466905	2R_7466905_SNP [dm3] 2R_11579400_SNP [dm6]	T	C	3.194e^-4	0.687	UTR_3_PRIME tou DOWNSTREAM tou
2R	8310907	2R_8310907_INS [dm3] 2R_12423402_INS [dm6]	A	ATT	3.202e^-4	0.687	UPSTREAM CG8834 & 1 other INTRON CG8520	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6493442	2L_6493442_SNP [dm3] 2L_6493442_SNP [dm6]	C	T	3.207e^-4	0.687	SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4676521	X_4676521_SNP [dm3] X_4782488_SNP [dm6]	G	T	3.212e^-4	0.687	NON_SYNONYMOUS_CODING CG15471
X	17102099	X_17102099_SNP [dm3] X_17208066_SNP [dm6]	A	T	3.213e^-4	0.687	UPSTREAM CG32563 DOWNSTREAM CG32564 INTERGENIC
2R	16824077	2R_16824077_SNP [dm3] 2R_20936572_SNP [dm6]	T	C	3.219e^-4	0.687	NON_SYNONYMOUS_CODING Rx
2R	13034120	2R_13034120_SNP [dm3] 2R_17146615_SNP [dm6]	G	A	3.224e^-4	0.687	DOWNSTREAM snoRNA:U3:54Ab INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	13353538	2L_13353538_SNP [dm3] 2L_13353538_SNP [dm6]	A	T	3.224e^-4	0.687	INTRON CG9395
3L	18092056	3L_18092056_INS [dm3] 3L_18098956_INS [dm6]	G	CATT	3.226e^-4	0.687	INTRON CG13698
3L	14074994	3L_14074994_SNP [dm3] 3L_14081894_SNP [dm6]	T	C	3.232e^-4	0.687	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20676337	2L_20676337_SNP [dm3] 2L_20676337_SNP [dm6]	G	A	3.233e^-4	0.687	SYNONYMOUS_CODING ik2 UPSTREAM CG31678	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17044123	3L_17044123_INS [dm3] 3L_17051023_INS [dm6]	T	TGT	3.235e^-4	0.687	UPSTREAM rogdi INTRON rogdi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2R	19603402	2R_19603402_SNP [dm3] 2R_23715879_SNP [dm6]	C	T	3.240e^-4	0.687	INTRON Sesn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26471224	3R_26471224_SNP [dm3] 3R_30645502_SNP [dm6]	T	G	3.241e^-4	0.687	NON_SYNONYMOUS_CODING CG31013 DOWNSTREAM PH4alphaPV	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2R	3031635	2R_3031635_SNP [dm3] 2R_7144130_SNP [dm6]	G	T	3.244e^-4	0.687	INTERGENIC
2L	18992771	2L_18992771_SNP [dm3] 2L_18992771_SNP [dm6]	T	A	3.250e^-4	0.687	DOWNSTREAM CG10650 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	7986366	2L_7986366_SNP [dm3] 2L_7986366_SNP [dm6]	C	T	3.252e^-4	0.687	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
X	4334888	X_4334888_SNP [dm3] X_4440855_SNP [dm6]	C	G	3.261e^-4	0.687	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2R	13580661	2R_13580661_SNP [dm3] 2R_17693156_SNP [dm6]	A	G	3.261e^-4	0.687	INTRON swi2
2L	11328706	2L_11328706_SNP [dm3] 2L_11328706_SNP [dm6]	G	C	3.263e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	18540425	2L_18540425_SNP [dm3] 2L_18540425_SNP [dm6]	A	T	3.265e^-4	0.687	INTRON Pde11
3R	1785474	3R_1785474_SNP [dm3] 3R_5959752_SNP [dm6]	G	C	3.265e^-4	0.687	UPSTREAM CG34113 DOWNSTREAM CG11373 INTERGENIC
3L	18038324	3L_18038324_SNP [dm3] 3L_18045224_SNP [dm6]	T	G	3.266e^-4	0.687	INTRON Eip75B
2R	17864733	2R_17864733_SNP [dm3] 2R_21977228_SNP [dm6]	A	G	3.266e^-4	0.687	SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304 & 1 other	TF binding site mE1_TFBS_sens
X	4310743	X_4310743_SNP [dm3] X_4416710_SNP [dm6]	A	G	3.269e^-4	0.687	INTRON CR32773 & 1 other
2L	2807125	2L_2807125_SNP [dm3] 2L_2807125_SNP [dm6]	A	G	3.271e^-4	0.687	INTRON daw	TF binding site BDTNP1_TFBS_dl
3L	11477800	3L_11477800_SNP [dm3] 3L_11484700_SNP [dm6]	A	C	3.273e^-4	0.687	INTERGENIC
2L	14447101	2L_14447101_INS [dm3] 2L_14447101_INS [dm6]	A	AGAAAATTGCTCTGAGATAC...	3.294e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14447113	2L_14447113_SNP [dm3] 2L_14447113_SNP [dm6]	T	G	3.294e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14447118	2L_14447118_INS [dm3] 2L_14447118_INS [dm6]	A	ACTGTACTTA	3.294e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19573576	2R_19573576_DEL [dm3] 2R_23686053_DEL [dm6]	TAC	T	3.299e^-4	0.687	UPSTREAM l_2_efl INTRON St3
2L	12745457	2L_12745457_SNP [dm3] 2L_12745457_SNP [dm6]	A	T	3.299e^-4	0.687	DOWNSTREAM MRP INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9546112	2L_9546112_SNP [dm3] 2L_9546112_SNP [dm6]	A	G	3.300e^-4	0.687	SYNONYMOUS_CODING CG13114	TF binding site mE1_TFBS_chinmo
3R	19330355	3R_19330355_SNP [dm3] 3R_23504633_SNP [dm6]	C	T	3.301e^-4	0.687	INTERGENIC
3R	23316855	3R_23316855_SNP [dm3] 3R_27491133_SNP [dm6]	G	T	3.308e^-4	0.687	INTERGENIC
2R	6796333	2R_6796333_SNP [dm3] 2R_10908828_SNP [dm6]	C	G	3.314e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4333779	X_4333779_SNP [dm3] X_4439746_SNP [dm6]	A	T	3.315e^-4	0.687	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2R	2050564	2R_2050564_SNP [dm3] 2R_6163059_SNP [dm6]	A	T	3.322e^-4	0.687	UPSTREAM tRNA:N5:42Ac & 1 other DOWNSTREAM tRNA:N5:42Ab & 1 other INTRON EcR	TF binding site mE1_TFBS_cad
3L	13353696	3L_13353696_SNP [dm3] 3L_13360596_SNP [dm6]	T	A	3.323e^-4	0.687	INTERGENIC
3L	4836583	3L_4836583_SNP [dm3] 3L_4836583_SNP [dm6]	A	G	3.324e^-4	0.687	INTERGENIC
2L	622027	2L_622027_INS [dm3] 2L_622027_INS [dm6]	T	TT	3.328e^-4	0.687	UPSTREAM lectin-21Cb INTERGENIC
2L	9747414	2L_9747414_SNP [dm3] 2L_9747414_SNP [dm6]	C	T	3.330e^-4	0.687	UPSTREAM Nckx30C DOWNSTREAM Cyp4e3 INTERGENIC
2L	16320608	2L_16320608_SNP [dm3] 2L_16320608_SNP [dm6]	G	T	3.330e^-4	0.687	INTRON cact	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10004583	3R_10004583_SNP [dm3] 3R_14178861_SNP [dm6]	G	A	3.335e^-4	0.687	INTRON Dop1R1
X	18037066	X_18037066_SNP [dm3] X_18143033_SNP [dm6]	T	G	3.336e^-4	0.687	INTERGENIC
X	18730110	X_18730110_SNP [dm3] X_18836077_SNP [dm6]	T	G	3.351e^-4	0.687	INTRON Pvf1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15276794	2L_15276794_SNP [dm3] 2L_15276794_SNP [dm6]	A	G	3.356e^-4	0.687	INTERGENIC
2L	1252043	2L_1252043_SNP [dm3] 2L_1252043_SNP [dm6]	C	A	3.360e^-4	0.687	INTERGENIC
3R	12897186	3R_12897186_SNP [dm3] 3R_17071464_SNP [dm6]	T	A	3.361e^-4	0.687	SYNONYMOUS_CODING Ns1
3L	9307927	3L_9307927_SNP [dm3] 3L_9314827_SNP [dm6]	G	A	3.371e^-4	0.687	INTERGENIC
X	16761777	X_16761777_SNP [dm3] X_16867744_SNP [dm6]	T	G	3.382e^-4	0.687	INTRON CG13003
X	16375035	X_16375035_SNP [dm3] X_16481002_SNP [dm6]	T	G	3.387e^-4	0.687	INTRON para
3R	18817071	3R_18817071_SNP [dm3] 3R_22991349_SNP [dm6]	C	A	3.398e^-4	0.687	NON_SYNONYMOUS_CODING Nha2 DOWNSTREAM Or94b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15295878	3R_15295878_SNP [dm3] 3R_19470156_SNP [dm6]	G	T	3.406e^-4	0.687	INTRON Dys
X	10382681	X_10382681_SNP [dm3] X_10488648_SNP [dm6]	T	A	3.409e^-4	0.687	INTERGENIC
3R	26919347	3R_26919347_SNP [dm3] 3R_31093625_SNP [dm6]	C	G	3.412e^-4	0.687	INTRON CG11317
2L	9744607	2L_9744607_SNP [dm3] 2L_9744607_SNP [dm6]	T	G	3.414e^-4	0.687	INTRON Nckx30C
X	16413900	X_16413900_SNP [dm3] X_16519867_SNP [dm6]	C	A	3.417e^-4	0.687	INTRON para
3L	16310450	3L_16310450_SNP [dm3] 3L_16317350_SNP [dm6]	T	C	3.418e^-4	0.687	UPSTREAM Nplp3 INTERGENIC
3R	8485688	3R_8485688_SNP [dm3] 3R_12659966_SNP [dm6]	C	T	3.424e^-4	0.687	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
3R	2844796	3R_2844796_SNP [dm3] 3R_7019074_SNP [dm6]	G	T	3.424e^-4	0.687	INTERGENIC
2R	8184934	2R_8184934_SNP [dm3] 2R_12297429_SNP [dm6]	C	T	3.424e^-4	0.687	INTRON CG42700 EXON CR45271	TF binding site mE1_TFBS_chinmo
2L	3192725	2L_3192725_SNP [dm3] 2L_3192725_SNP [dm6]	A	T	3.427e^-4	0.687	SYNONYMOUS_CODING CG34393	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6892636	2R_6892636_SNP [dm3] 2R_11005131_SNP [dm6]	C	T	3.429e^-4	0.687	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17189972	2R_17189972_SNP [dm3] 2R_21302467_SNP [dm6]	G	T	3.430e^-4	0.687	SYNONYMOUS_CODING CG42672 INTRON CG42672
3L	2880021	3L_2880021_SNP [dm3] 3L_2880021_SNP [dm6]	C	T	3.431e^-4	0.687	UPSTREAM CG43444 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	13996603	X_13996603_INS [dm3] X_14102570_INS [dm6]	T	TG	3.432e^-4	0.687	DOWNSTREAM tRNA:S4:12Ee INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7128141	2R_7128141_SNP [dm3] 2R_11240636_SNP [dm6]	G	C	3.434e^-4	0.687	UPSTREAM CG13215 INTERGENIC
2R	7140166	2R_7140166_SNP [dm3] 2R_11252661_SNP [dm6]	T	C	3.439e^-4	0.687	DOWNSTREAM Or47a INTRON Cpr47Ea
X	10382802	X_10382802_SNP [dm3] X_10488769_SNP [dm6]	T	A	3.442e^-4	0.687	INTERGENIC
2L	12901093	2L_12901093_SNP [dm3] 2L_12901093_SNP [dm6]	G	A	3.443e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19599895	2R_19599895_SNP [dm3] 2R_23712372_SNP [dm6]	A	G	3.446e^-4	0.687	INTERGENIC
X	14808188	X_14808188_SNP [dm3] X_14914155_SNP [dm6]	A	T	3.450e^-4	0.687	UPSTREAM CG12398 INTRON Flo2
X	20482271	X_20482271_SNP [dm3] X_20611244_SNP [dm6]	A	G	3.453e^-4	0.687	INTRON RunxA
X	20482334	X_20482334_DEL [dm3] X_20611307_DEL [dm6]	CAAT	C	3.453e^-4	0.687	INTRON RunxA
X	20482339	X_20482339_DEL [dm3] X_20611312_DEL [dm6]	CATTAGACAAAT...	C	3.453e^-4	0.687	INTRON RunxA
X	20482352	X_20482352_SNP [dm3] X_20611325_SNP [dm6]	T	C	3.453e^-4	0.687	INTRON RunxA
X	20482353	X_20482353_SNP [dm3] X_20611326_SNP [dm6]	T	G	3.453e^-4	0.687	INTRON RunxA
X	20482356	X_20482356_SNP [dm3] X_20611329_SNP [dm6]	C	T	3.453e^-4	0.687	INTRON RunxA
X	20482362	X_20482362_SNP [dm3] X_20611335_SNP [dm6]	G	A	3.453e^-4	0.687	INTRON RunxA
3R	18044819	3R_18044819_SNP [dm3] 3R_22219097_SNP [dm6]	T	A	3.454e^-4	0.687	INTRON SKIP	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10603307	3L_10603307_SNP [dm3] 3L_10610207_SNP [dm6]	T	G	3.466e^-4	0.687	INTERGENIC
3R	27210331	3R_27210331_INS [dm3] 3R_31384609_INS [dm6]	T	TTT	3.469e^-4	0.687	INTRON CG1607	TF binding site mE1_TFBS_Trl
3R	17060913	3R_17060913_SNP [dm3] 3R_21235191_SNP [dm6]	G	A	3.470e^-4	0.687	INTRON e	regulatory region REDfly_CRMs
2L	7100249	2L_7100249_SNP [dm3] 2L_7100249_SNP [dm6]	A	T	3.475e^-4	0.687	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	13669739	3R_13669739_SNP [dm3] 3R_17844017_SNP [dm6]	T	A	3.476e^-4	0.687	INTRON tinc
3R	8188542	3R_8188542_SNP [dm3] 3R_12362820_SNP [dm6]	A	G	3.476e^-4	0.687	SYNONYMOUS_CODING CG4115 UPSTREAM snmRNA:419 DOWNSTREAM Tim17a1
2R	13580741	2R_13580741_SNP [dm3] 2R_17693236_SNP [dm6]	A	G	3.477e^-4	0.687	INTRON swi2
2R	2057100	2R_2057100_SNP [dm3] 2R_6169595_SNP [dm6]	T	C	3.482e^-4	0.687	UPSTREAM tRNA:R2:42Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19627040	2R_19627040_SNP [dm3] 2R_23739517_SNP [dm6]	A	T	3.485e^-4	0.687	INTRON egl
2L	4788143	2L_4788143_SNP [dm3] 2L_4788143_SNP [dm6]	C	T	3.490e^-4	0.687	INTRON CG15630
X	17857723	X_17857723_SNP [dm3] X_17963690_SNP [dm6]	A	C	3.491e^-4	0.687	INTRON Sh	TF binding site BDTNP1_TFBS_dl
X	8606201	X_8606201_SNP [dm3] X_8712168_SNP [dm6]	T	C	3.492e^-4	0.687	DOWNSTREAM CG2004 INTRON Hexo2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	14808826	X_14808826_SNP [dm3] X_14914793_SNP [dm6]	G	C	3.492e^-4	0.687	UPSTREAM CG12398 INTRON Flo2
2L	12720595	2L_12720595_SNP [dm3] 2L_12720595_SNP [dm6]	G	T	3.495e^-4	0.687	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_cad
X	20751660	X_20751660_INS [dm3] X_20880633_INS [dm6]	T	TTA	3.495e^-4	0.687	INTRON shakB
3L	9666801	3L_9666801_SNP [dm3] 3L_9673701_SNP [dm6]	A	G	3.508e^-4	0.687	INTRON fry
3L	5706215	3L_5706215_SNP [dm3] 3L_5713115_SNP [dm6]	T	C	3.511e^-4	0.687	UPSTREAM CG44521 INTRON sif
3L	5088675	3L_5088675_SNP [dm3] 3L_5088675_SNP [dm6]	A	G	3.515e^-4	0.687	INTERGENIC
3L	6841650	3L_6841650_SNP [dm3] 3L_6848550_SNP [dm6]	A	T	3.522e^-4	0.687	INTERGENIC
X	12881408	X_12881408_SNP [dm3] X_12987375_SNP [dm6]	C	G	3.523e^-4	0.687	INTERGENIC
2L	13355350	2L_13355350_SNP [dm3] 2L_13355350_SNP [dm6]	T	A	3.527e^-4	0.687	UPSTREAM CG9395 INTERGENIC
2L	14447070	2L_14447070_SNP [dm3] 2L_14447070_SNP [dm6]	G	T	3.530e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2037872	2R_2037872_SNP [dm3] 2R_6150367_SNP [dm6]	A	G	3.533e^-4	0.687	INTRON EcR
2L	2023630	2L_2023630_SNP [dm3] 2L_2023630_SNP [dm6]	C	T	3.537e^-4	0.687	UPSTREAM CG4238 INTRON CG4238
X	12085631	X_12085631_SNP [dm3] X_12191598_SNP [dm6]	A	G	3.540e^-4	0.687	INTRON Ten-a
2L	12775219	2L_12775219_DEL [dm3] 2L_12775219_DEL [dm6]	TG	T	3.547e^-4	0.687	INTERGENIC
2R	9076013	2R_9076013_SNP [dm3] 2R_13188508_SNP [dm6]	A	G	3.547e^-4	0.687	INTRON seq & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5302449	3L_5302449_DEL [dm3] 3L_5309349_DEL [dm6]	TTTAT	T	3.550e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_HSA
X	20482269	X_20482269_SNP [dm3] X_20611242_SNP [dm6]	T	C	3.551e^-4	0.687	INTRON RunxA
2R	9166153	2R_9166153_SNP [dm3] 2R_13278648_SNP [dm6]	A	G	3.556e^-4	0.687	INTRON Dh31-R
2R	11854066	2R_11854066_SNP [dm3] 2R_15966561_SNP [dm6]	T	A	3.561e^-4	0.687	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3907478	2L_3907478_SNP [dm3] 2L_3907478_SNP [dm6]	T	A	3.561e^-4	0.687	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18639838	3R_18639838_SNP [dm3] 3R_22814116_SNP [dm6]	T	C	3.564e^-4	0.687	DOWNSTREAM CG13840 INTERGENIC
X	15680830	X_15680830_SNP [dm3] X_15786797_SNP [dm6]	T	C	3.564e^-4	0.687	SYNONYMOUS_CODING mRpS30	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11484548	3L_11484548_INS [dm3] 3L_11491448_INS [dm6]	T	TCT	3.565e^-4	0.687	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3208747	3R_3208747_SNP [dm3] 3R_7383025_SNP [dm6]	C	G	3.568e^-4	0.687	INTERGENIC
3R	23316863	3R_23316863_SNP [dm3] 3R_27491141_SNP [dm6]	A	T	3.570e^-4	0.687	INTERGENIC
2L	3698472	2L_3698472_SNP [dm3] 2L_3698472_SNP [dm6]	C	A	3.575e^-4	0.687	UTR_3_PRIME CG10031 UPSTREAM CG3604 & 1 other
3L	4605760	3L_4605760_SNP [dm3] 3L_4605760_SNP [dm6]	G	A	3.577e^-4	0.687	INTRON Src64B	TF binding site mE1_TFBS_sbb
3R	20257510	3R_20257510_SNP [dm3] 3R_24431788_SNP [dm6]	A	T	3.580e^-4	0.687	INTRON nAChRalpha1
X	5050075	X_5050075_SNP [dm3] X_5156042_SNP [dm6]	T	C	3.584e^-4	0.687	INTRON rg & 1 other
3L	2016107	3L_2016107_SNP [dm3] 3L_2016107_SNP [dm6]	T	A	3.586e^-4	0.687	INTERGENIC
3L	13353764	3L_13353764_SNP [dm3] 3L_13360664_SNP [dm6]	A	T	3.588e^-4	0.687	INTERGENIC
X	18193385	X_18193385_SNP [dm3] X_18299352_SNP [dm6]	A	G	3.590e^-4	0.687	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2R	8607328	2R_8607328_SNP [dm3] 2R_12719823_SNP [dm6]	T	G	3.590e^-4	0.687	INTRON CG42663
2L	924055	2L_924055_SNP [dm3] 2L_924055_SNP [dm6]	G	T	3.597e^-4	0.687	INTRON CG4341	TF binding site mE1_TFBS_chinmo
X	18037055	X_18037055_INS [dm3] X_18143022_INS [dm6]	A	AGAAG	3.598e^-4	0.687	INTERGENIC
X	8621201	X_8621201_SNP [dm3] X_8727168_SNP [dm6]	A	G	3.599e^-4	0.687	INTERGENIC
2L	14066190	2L_14066190_SNP [dm3] 2L_14066190_SNP [dm6]	A	C	3.600e^-4	0.687	INTRON nAChRalpha5
X	4310742	X_4310742_SNP [dm3] X_4416709_SNP [dm6]	T	G	3.604e^-4	0.687	INTRON CR32773 & 1 other
3R	19450616	3R_19450616_SNP [dm3] 3R_23624894_SNP [dm6]	C	T	3.604e^-4	0.687	INTRON CG31145
2L	1270598	2L_1270598_SNP [dm3] 2L_1270598_SNP [dm6]	A	G	3.606e^-4	0.687	INTRON robo3
2R	5355267	2R_5355267_SNP [dm3] 2R_9467762_SNP [dm6]	A	T	3.612e^-4	0.687	INTRON Camta
3R	17080190	3R_17080190_SNP [dm3] 3R_21254468_SNP [dm6]	G	A	3.612e^-4	0.687	INTRON ETHR
2R	13658246	2R_13658246_SNP [dm3] 2R_17770741_SNP [dm6]	A	G	3.614e^-4	0.687	SYNONYMOUS_CODING CG6362 UPSTREAM CG18635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8949746	3L_8949746_SNP [dm3] 3L_8956646_SNP [dm6]	T	A	3.620e^-4	0.687	UPSTREAM mRpL12 DOWNSTREAM GNBP3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	2048475	2R_2048475_SNP [dm3] 2R_6160970_SNP [dm6]	C	T	3.624e^-4	0.687	UPSTREAM tRNA:R2:42Ac INTRON EcR	TF binding site BDTNP1_TFBS_dl
3R	18653456	3R_18653456_SNP [dm3] 3R_22827734_SNP [dm6]	A	G	3.638e^-4	0.688	UPSTREAM CR44350 INTERGENIC
3R	13757399	3R_13757399_SNP [dm3] 3R_17931677_SNP [dm6]	G	A	3.643e^-4	0.688	UPSTREAM cpo INTRON cpo
2R	9257520	2R_9257520_SNP [dm3] 2R_13370015_SNP [dm6]	C	T	3.645e^-4	0.688	INTERGENIC
3L	16748666	3L_16748666_SNP [dm3] 3L_16755566_SNP [dm6]	C	A	3.645e^-4	0.688	INTRON CG42852
2L	7940343	2L_7940343_SNP [dm3] 2L_7940343_SNP [dm6]	A	G	3.651e^-4	0.688	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
3R	25312095	3R_25312095_INS [dm3] 3R_29486373_INS [dm6]	T	TTAT	3.652e^-4	0.688	UTR_3_PRIME Ptp99A DOWNSTREAM CG2321 INTRON CG2321
X	8911022	X_8911022_SNP [dm3] X_9016989_SNP [dm6]	C	T	3.659e^-4	0.689	INTRON CR43836 & 1 other
X	19111077	X_19111077_SNP [dm3] X_19217044_SNP [dm6]	T	A	3.667e^-4	0.689	DOWNSTREAM Muc18B INTERGENIC	TF binding site BDTNP1_TFBS_da
X	20482323	X_20482323_SNP [dm3] X_20611296_SNP [dm6]	T	G	3.667e^-4	0.689	INTRON RunxA
X	20482331	X_20482331_SNP [dm3] X_20611304_SNP [dm6]	C	A	3.679e^-4	0.69	INTRON RunxA
3L	9619513	3L_9619513_SNP [dm3] 3L_9626413_SNP [dm6]	C	G	3.682e^-4	0.69	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv

By genomic position
Variant impact
Gene name

mn_Lifespan phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results