DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.603e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1904 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	1.405e^-8	0.026	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	4.199e^-8	0.027	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	4.391e^-8	0.027	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	9.000e^-8	0.042	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8523117	2L_8523117_SNP [dm3] 2L_8523117_SNP [dm6]	A	G	1.279e^-7	0.042	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	1.335e^-7	0.042	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
3R	18535684	3R_18535684_SNP [dm3] 3R_22709962_SNP [dm6]	T	C	1.763e^-7	0.047	NON_SYNONYMOUS_CODING CG4907 SPLICE_SITE_REGION CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	3.796e^-7	0.066	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	3.896e^-7	0.066	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8523105	2L_8523105_SNP [dm3] 2L_8523105_SNP [dm6]	G	C	4.011e^-7	0.066	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8523133	2L_8523133_SNP [dm3] 2L_8523133_SNP [dm6]	G	A	4.011e^-7	0.066	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	4.664e^-7	0.066	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	4.733e^-7	0.066	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	4.905e^-7	0.066	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	6.693e^-7	0.074	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	6.710e^-7	0.074	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	6.710e^-7	0.074	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	7.642e^-7	0.08	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	8.611e^-7	0.084	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	8.935e^-7	0.084	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	9.530e^-7	0.085	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	1.083e^-6	0.092	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	1.280e^-6	0.1	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	1.329e^-6	0.1	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17612492	3R_17612492_SNP [dm3] 3R_21786770_SNP [dm6]	A	G	1.330e^-6	0.1	SYNONYMOUS_CODING CASK UPSTREAM CRG
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	1.474e^-6	0.106	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	1.700e^-6	0.118	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	1.838e^-6	0.123	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	2.096e^-6	0.13	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	2.103e^-6	0.13	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	2.201e^-6	0.13	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
3R	17612528	3R_17612528_SNP [dm3] 3R_21786806_SNP [dm6]	G	A	2.215e^-6	0.13	SYNONYMOUS_CODING CASK UPSTREAM CRG
2L	8512026	2L_8512026_SNP [dm3] 2L_8512026_SNP [dm6]	G	A	2.819e^-6	0.157	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	17612474	3R_17612474_SNP [dm3] 3R_21786752_SNP [dm6]	G	T	2.837e^-6	0.157	SYNONYMOUS_CODING CASK UPSTREAM CRG
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	3.032e^-6	0.163	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8521004	2L_8521004_SNP [dm3] 2L_8521004_SNP [dm6]	C	A	3.305e^-6	0.17	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	2617570	2L_2617570_SNP [dm3] 2L_2617570_SNP [dm6]	T	C	3.361e^-6	0.17	INTERGENIC
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	4.217e^-6	0.208	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25790726	3R_25790726_INS [dm3] 3R_29965004_INS [dm6]	G	GTG	4.407e^-6	0.211	INTRON TkR99D
X	16051095	X_16051095_SNP [dm3] X_16157062_SNP [dm6]	C	G	4.562e^-6	0.211	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13477342	X_13477342_SNP [dm3] X_13583309_SNP [dm6]	T	G	4.693e^-6	0.211	INTRON Tango13
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	4.831e^-6	0.211	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	4.879e^-6	0.211	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14330647	3L_14330647_SNP [dm3] 3L_14337547_SNP [dm6]	A	G	5.033e^-6	0.211	INTRON fz
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	5.058e^-6	0.211	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	5.688e^-6	0.228	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	5.707e^-6	0.228	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5969915	X_5969915_SNP [dm3] X_6075882_SNP [dm6]	C	G	6.314e^-6	0.247	DOWNSTREAM CG4666 INTERGENIC
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	6.864e^-6	0.25	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8510992	2L_8510992_SNP [dm3] 2L_8510992_SNP [dm6]	G	T	6.883e^-6	0.25	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8517273	2L_8517273_SNP [dm3] 2L_8517273_SNP [dm6]	A	G	6.888e^-6	0.25	NON_SYNONYMOUS_CODING mRpL51 UPSTREAM CG13090 DOWNSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12157460	2L_12157460_SNP [dm3] 2L_12157460_SNP [dm6]	C	G	7.170e^-6	0.25	INTRON CG31760
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	7.261e^-6	0.25	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	7.261e^-6	0.25	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	7.344e^-6	0.25	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19511977	3L_19511977_SNP [dm3] 3L_19518877_SNP [dm6]	T	A	7.509e^-6	0.252	UPSTREAM Cpr76Ba & 1 other INTERGENIC
2L	10515699	2L_10515699_SNP [dm3] 2L_10515699_SNP [dm6]	G	T	8.081e^-6	0.263	INTRON Fatp & 1 other
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	8.120e^-6	0.263	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4623064	2L_4623064_SNP [dm3] 2L_4623064_SNP [dm6]	C	T	8.753e^-6	0.278	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	1706828	3R_1706828_SNP [dm3] 3R_5881106_SNP [dm6]	G	C	9.181e^-6	0.287	INTRON CG34113	TF binding site mE1_TFBS_cad
3R	2457128	3R_2457128_SNP [dm3] 3R_6631406_SNP [dm6]	C	G	9.796e^-6	0.301	DOWNSTREAM sunz INTERGENIC
3L	14330714	3L_14330714_SNP [dm3] 3L_14337614_SNP [dm6]	T	A	9.973e^-6	0.302	INTRON fz
X	16051099	X_16051099_SNP [dm3] X_16157066_SNP [dm6]	T	C	1.109e^-5	0.33	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	1.179e^-5	0.343	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25761459	3R_25761459_SNP [dm3] 3R_29935737_SNP [dm6]	A	G	1.188e^-5	0.343	SPLICE_SITE_REGION eIF2B-alpha UPSTREAM CG15523 INTRON eIF2B-alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25772060	3R_25772060_SNP [dm3] 3R_29946338_SNP [dm6]	G	A	1.233e^-5	0.351	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	1.270e^-5	0.351	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515387	2L_8515387_SNP [dm3] 2L_8515387_SNP [dm6]	C	T	1.272e^-5	0.351	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25761377	3R_25761377_SNP [dm3] 3R_29935655_SNP [dm6]	T	G	1.332e^-5	0.362	SYNONYMOUS_CODING eIF2B-alpha UPSTREAM CG15523	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20411855	3R_20411855_SNP [dm3] 3R_24586133_SNP [dm6]	C	G	1.369e^-5	0.367	UPSTREAM CG13625 INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	1264293	3L_1264293_SNP [dm3] 3L_1264293_SNP [dm6]	C	T	1.408e^-5	0.372	INTRON CG9134
3R	2457129	3R_2457129_SNP [dm3] 3R_6631407_SNP [dm6]	A	C	1.653e^-5	0.431	DOWNSTREAM sunz INTERGENIC
3R	25786776	3R_25786776_SNP [dm3] 3R_29961054_SNP [dm6]	G	C	1.719e^-5	0.442	INTRON TkR99D
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	1.816e^-5	0.46	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	26604971	3R_26604971_SNP [dm3] 3R_30779249_SNP [dm6]	G	A	1.885e^-5	0.471	INTRON zfh1
2L	8513167	2L_8513167_SNP [dm3] 2L_8513167_SNP [dm6]	C	T	1.923e^-5	0.475	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	21182073	3R_21182073_SNP [dm3] 3R_25356351_SNP [dm6]	G	T	1.979e^-5	0.482	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22536985	3R_22536985_SNP [dm3] 3R_26711263_SNP [dm6]	G	T	2.043e^-5	0.491	INTRON amon
2L	3698510	2L_3698510_DEL [dm3] 2L_3698510_DEL [dm6]	AA	A	2.084e^-5	0.495	UTR_3_PRIME CG10031 UPSTREAM CG3604 & 1 other
2L	8515461	2L_8515461_SNP [dm3] 2L_8515461_SNP [dm6]	T	C	2.136e^-5	0.501	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20163982	3R_20163982_SNP [dm3] 3R_24338260_SNP [dm6]	A	G	2.262e^-5	0.515	NON_SYNONYMOUS_CODING CG6432 UPSTREAM mir-1015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10427903	2L_10427903_SNP [dm3] 2L_10427903_SNP [dm6]	G	A	2.295e^-5	0.515	UTR_3_PRIME KdelR UPSTREAM CG5188
2L	8507808	2L_8507808_SNP [dm3] 2L_8507808_SNP [dm6]	C	A	2.304e^-5	0.515	UPSTREAM Dh31 INTERGENIC
2L	8515362	2L_8515362_SNP [dm3] 2L_8515362_SNP [dm6]	T	G	2.365e^-5	0.515	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10515453	2L_10515453_SNP [dm3] 2L_10515453_SNP [dm6]	C	T	2.389e^-5	0.515	INTRON Fatp & 1 other
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	2.401e^-5	0.515	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
3R	21261011	3R_21261011_SNP [dm3] 3R_25435289_SNP [dm6]	C	G	2.403e^-5	0.515	INTRON Fur1
3L	8648455	3L_8648455_DEL [dm3] 3L_8655355_DEL [dm6]	AAGTATATCAA...	A	2.441e^-5	0.515	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4003181	3L_4003181_SNP [dm3] 3L_4003181_SNP [dm6]	G	A	2.470e^-5	0.515	UPSTREAM CG14985 INTERGENIC
3R	8213268	3R_8213268_DEL [dm3] 3R_12387546_DEL [dm6]	AGCTA	A	2.473e^-5	0.515	UTR_5_PRIME CG33098 UPSTREAM CG33098 INTRON CG34402	TF binding site mE1_TFBS_cad
X	5509404	X_5509404_SNP [dm3] X_5615371_SNP [dm6]	C	A	2.578e^-5	0.529	NON_SYNONYMOUS_CODING CG34434 UPSTREAM CG34435
3R	22025796	3R_22025796_SNP [dm3] 3R_26200074_SNP [dm6]	C	T	2.637e^-5	0.529	INTRON CR44320	TF binding site BDTNP1_TFBS_twi
2L	3930316	2L_3930316_SNP [dm3] 2L_3930316_SNP [dm6]	T	A	2.677e^-5	0.529	INTRON fred
3L	13682618	3L_13682618_INS [dm3] 3L_13689518_INS [dm6]	A	AACTGGGCA	2.682e^-5	0.529	INTRON bru-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	2.693e^-5	0.529	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	7743542	2R_7743542_SNP [dm3] 2R_11856037_SNP [dm6]	T	C	2.735e^-5	0.529	SYNONYMOUS_CODING Mtor	TF binding site mE1_TFBS_cad
3R	25764013	3R_25764013_SNP [dm3] 3R_29938291_SNP [dm6]	T	C	2.735e^-5	0.529	SYNONYMOUS_CODING CG15523 UTR_3_PRIME CG15523
3R	25761316	3R_25761316_DEL [dm3] 3R_29935594_DEL [dm6]	TT	T	2.809e^-5	0.538	UPSTREAM CG15523 INTRON eIF2B-alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	985082	2L_985082_SNP [dm3] 2L_985082_SNP [dm6]	G	A	2.942e^-5	0.552	INTERGENIC
2L	263485	2L_263485_SNP [dm3] 2L_263485_SNP [dm6]	A	C	2.968e^-5	0.552	UTR_3_PRIME CG17075 DOWNSTREAM CR44219 INTRON CG3645	TF binding site mE1_TFBS_cad

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Missing results

By genomic position
Variant impact
Gene name

Cuticul_2_Me_C26 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results