DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.043e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	1.043e-05
In_3R_K	0.05147

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	15.6949	0.0004
In_3R_K	5.2804	0.0713

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1976 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	9381344	3R_9381344_SNP [dm3] 3R_13555622_SNP [dm6]	C	A	4.661e^-7	0.632	INTERGENIC
3R	15854570	3R_15854570_SNP [dm3] 3R_20028848_SNP [dm6]	T	G	8.650e^-7	0.632	UPSTREAM CG4424 DOWNSTREAM trem INTRON CG4854	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	8251891	3L_8251891_SNP [dm3] 3L_8258791_SNP [dm6]	T	A	1.810e^-6	0.632	INTRON Dscam4
3R	9381472	3R_9381472_DEL [dm3] 3R_13555750_DEL [dm6]	GTAGTGAATACTAA...	G	2.500e^-6	0.632	INTERGENIC
2R	20135625	2R_20135625_SNP [dm3] 2R_24248102_SNP [dm6]	G	A	3.195e^-6	0.632	DOWNSTREAM Ir60a INTRON nord
2R	14222340	2R_14222340_SNP [dm3] 2R_18334835_SNP [dm6]	A	G	3.323e^-6	0.632	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	15854577	3R_15854577_SNP [dm3] 3R_20028855_SNP [dm6]	A	G	3.390e^-6	0.632	UPSTREAM CG4424 DOWNSTREAM trem INTRON CG4854	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	15814105	3R_15814105_SNP [dm3] 3R_19988383_SNP [dm6]	A	G	4.055e^-6	0.632	INTRON Hs6st	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21791448	3R_21791448_SNP [dm3] 3R_25965726_SNP [dm6]	T	C	4.527e^-6	0.632	SYNONYMOUS_CODING boss	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13996704	2R_13996704_SNP [dm3] 2R_18109199_SNP [dm6]	A	T	4.663e^-6	0.632	UPSTREAM CG5756 & 1 other INTERGENIC
3R	9395927	3R_9395927_SNP [dm3] 3R_13570205_SNP [dm6]	A	C	4.910e^-6	0.632	INTERGENIC
3R	9381408	3R_9381408_SNP [dm3] 3R_13555686_SNP [dm6]	A	T	4.911e^-6	0.632	INTERGENIC
3L	5489845	3L_5489845_SNP [dm3] 3L_5496745_SNP [dm6]	G	T	5.008e^-6	0.632	DOWNSTREAM blanks INTERGENIC
X	5533616	X_5533616_SNP [dm3] X_5639583_SNP [dm6]	C	T	5.046e^-6	0.632	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9392385	3R_9392385_DEL [dm3] 3R_13566663_DEL [dm6]	CATACAATGGTTACTTTC...	C	5.241e^-6	0.632	INTERGENIC
2R	8790543	2R_8790543_SNP [dm3] 2R_12903038_SNP [dm6]	C	A	5.394e^-6	0.632	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15854826	3R_15854826_SNP [dm3] 3R_20029104_SNP [dm6]	T	C	6.506e^-6	0.653	DOWNSTREAM trem INTRON CG4854
3R	9381546	3R_9381546_DEL [dm3] 3R_13555824_DEL [dm6]	TT	T	6.962e^-6	0.653	INTERGENIC
2R	15659776	2R_15659776_SNP [dm3] 2R_19772271_SNP [dm6]	C	T	6.970e^-6	0.653	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15131224	2L_15131224_SNP [dm3] 2L_15131224_SNP [dm6]	G	C	7.244e^-6	0.653	INTERGENIC
2R	13412097	2R_13412097_SNP [dm3] 2R_17524592_SNP [dm6]	C	T	7.307e^-6	0.653	SPLICE_SITE_REGION Patronin INTRON Patronin	TF binding site mE1_TFBS_cad
3R	15854438	3R_15854438_SNP [dm3] 3R_20028716_SNP [dm6]	A	G	8.047e^-6	0.686	SYNONYMOUS_CODING CG4854 UPSTREAM CG4424 DOWNSTREAM trem	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	13022926	2L_13022926_SNP [dm3] 2L_13022926_SNP [dm6]	A	T	8.732e^-6	0.691	UTR_3_PRIME CG9932
3R	13377631	3R_13377631_SNP [dm3] 3R_17551909_SNP [dm6]	T	C	8.837e^-6	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9384896	3R_9384896_SNP [dm3] 3R_13559174_SNP [dm6]	C	T	9.989e^-6	0.723	INTERGENIC
2L	13022818	2L_13022818_SNP [dm3] 2L_13022818_SNP [dm6]	G	T	1.002e^-5	0.723	UTR_3_PRIME CG9932
2R	14219961	2R_14219961_SNP [dm3] 2R_18332456_SNP [dm6]	T	C	1.093e^-5	0.759	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
X	20157145	X_20157145_SNP [dm3] X_20286118_SNP [dm6]	A	T	1.204e^-5	0.761	INTERGENIC
2R	14227634	2R_14227634_INS [dm3] 2R_18340129_INS [dm6]	C	CC	1.222e^-5	0.761	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12620366	2L_12620366_SNP [dm3] 2L_12620366_SNP [dm6]	C	G	1.227e^-5	0.761	INTRON Ref2 & 1 other	TF binding site mE1_TFBS_sens
3L	1197403	3L_1197403_SNP [dm3] 3L_1197403_SNP [dm6]	G	A	1.258e^-5	0.761	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11848993	3L_11848993_SNP [dm3] 3L_11855893_SNP [dm6]	T	A	1.390e^-5	0.764	INTRON CG44837
X	4463826	X_4463826_SNP [dm3] X_4569793_SNP [dm6]	G	T	1.535e^-5	0.764	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	321414	3L_321414_SNP [dm3] 3L_321414_SNP [dm6]	T	G	1.570e^-5	0.764	INTRON CG32344	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5021150	2L_5021150_SNP [dm3] 2L_5021150_SNP [dm6]	G	A	1.596e^-5	0.764	INTRON vkg
2L	1971254	2L_1971254_SNP [dm3] 2L_1971254_SNP [dm6]	T	G	1.610e^-5	0.764	UPSTREAM erm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1971291	2L_1971291_DEL [dm3] 2L_1971291_DEL [dm6]	AC	A	1.610e^-5	0.764	UPSTREAM erm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8616485	2R_8616485_SNP [dm3] 2R_12728980_SNP [dm6]	C	G	1.629e^-5	0.764	INTRON CG42663
2R	8536569	2R_8536569_SNP [dm3] 2R_12649064_SNP [dm6]	T	C	1.631e^-5	0.764	UPSTREAM CG8785 INTERGENIC
3R	820886	3R_820886_SNP [dm3] 3R_4995164_SNP [dm6]	G	C	1.638e^-5	0.764	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	6218177	2R_6218177_SNP [dm3] 2R_10330672_SNP [dm6]	C	T	1.670e^-5	0.764	INTRON CG42732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	821025	3R_821025_SNP [dm3] 3R_4995303_SNP [dm6]	T	C	1.715e^-5	0.766	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	5063371	3L_5063371_SNP [dm3] 3L_5063371_SNP [dm6]	G	A	1.770e^-5	0.767	INTRON Con
2L	1971337	2L_1971337_SNP [dm3] 2L_1971337_SNP [dm6]	C	T	1.799e^-5	0.767	UPSTREAM erm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8762613	2L_8762613_SNP [dm3] 2L_8762613_SNP [dm6]	C	G	1.951e^-5	0.777	INTERGENIC
3R	13377664	3R_13377664_SNP [dm3] 3R_17551942_SNP [dm6]	T	G	1.973e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	975294	3L_975294_SNP [dm3] 3L_975294_SNP [dm6]	A	C	1.976e^-5	0.777	INTRON Glut1
3L	10362687	3L_10362687_SNP [dm3] 3L_10369587_SNP [dm6]	G	T	1.989e^-5	0.777	INTERGENIC
3R	26105331	3R_26105331_SNP [dm3] 3R_30279609_SNP [dm6]	T	C	2.081e^-5	0.784	SYNONYMOUS_CODING hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15235046	3L_15235046_SNP [dm3] 3L_15241946_SNP [dm6]	G	A	2.163e^-5	0.784	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12282353	2L_12282353_SNP [dm3] 2L_12282353_SNP [dm6]	A	G	2.165e^-5	0.784	INTRON aret
3R	3553491	3R_3553491_SNP [dm3] 3R_7727769_SNP [dm6]	C	G	2.207e^-5	0.784	INTERGENIC
3L	7011895	3L_7011895_SNP [dm3] 3L_7018795_SNP [dm6]	C	G	2.215e^-5	0.784	INTRON Mp
2R	13416712	2R_13416712_SNP [dm3] 2R_17529207_SNP [dm6]	G	T	2.603e^-5	0.857	INTRON Patronin
3L	3920699	3L_3920699_SNP [dm3] 3L_3920699_SNP [dm6]	G	A	2.622e^-5	0.857	INTRON Eip63F-1
3L	7251571	3L_7251571_SNP [dm3] 3L_7258471_SNP [dm6]	C	A	2.633e^-5	0.857	INTRON CG14830
3L	5161079	3L_5161079_SNP [dm3] 3L_5167979_SNP [dm6]	C	T	2.715e^-5	0.857	INTRON shep
3R	8235840	3R_8235840_SNP [dm3] 3R_12410118_SNP [dm6]	T	C	2.815e^-5	0.857	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	15462287	3R_15462287_SNP [dm3] 3R_19636565_SNP [dm6]	C	T	2.864e^-5	0.857	NON_SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
X	19014571	X_19014571_SNP [dm3] X_19120538_SNP [dm6]	T	G	2.979e^-5	0.857	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8928584	2R_8928584_SNP [dm3] 2R_13041079_SNP [dm6]	T	A	3.018e^-5	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18261619	2R_18261619_SNP [dm3] 2R_22374114_SNP [dm6]	T	A	3.150e^-5	0.857	UPSTREAM Rtf1 INTRON CR44759	TF binding site BDTNP1_TFBS_dl
X	19014638	X_19014638_SNP [dm3] X_19120605_SNP [dm6]	T	C	3.244e^-5	0.857	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15462650	3R_15462650_SNP [dm3] 3R_19636928_SNP [dm6]	A	C	3.247e^-5	0.857	SYNONYMOUS_CODING subdued
3R	15807723	3R_15807723_SNP [dm3] 3R_19982001_SNP [dm6]	C	A	3.277e^-5	0.857	INTRON Hs6st
3R	15854306	3R_15854306_SNP [dm3] 3R_20028584_SNP [dm6]	C	G	3.344e^-5	0.857	NON_SYNONYMOUS_CODING CG4854 UPSTREAM CG4424 DOWNSTREAM trem	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19824457	2L_19824457_DEL [dm3] 2L_19824457_DEL [dm6]	TGGCCAAGAATTTACTGAAT...	T	3.385e^-5	0.857	INTRON sick
3L	8310063	3L_8310063_SNP [dm3] 3L_8316963_SNP [dm6]	C	T	3.415e^-5	0.857	INTERGENIC
2L	1298809	2L_1298809_INS [dm3] 2L_1298809_INS [dm6]	T	TT	3.446e^-5	0.857	INTERGENIC
3L	8880121	3L_8880121_SNP [dm3] 3L_8887021_SNP [dm6]	A	G	3.539e^-5	0.857	INTRON dally
2L	15466197	2L_15466197_DEL [dm3] 2L_15466197_DEL [dm6]	ATTA	A	3.564e^-5	0.857	INTERGENIC
3L	12486417	3L_12486417_DEL [dm3] 3L_12493317_DEL [dm6]	AAATTCTATTGCACAGGTTG...	A	3.573e^-5	0.857	INTRON CG10657 EXON CR45682	TF binding site mE1_TFBS_cad
3L	9824671	3L_9824671_SNP [dm3] 3L_9831571_SNP [dm6]	T	C	3.604e^-5	0.857	INTRON CG43897	TF binding site mE1_TFBS_cad
3L	4952007	3L_4952007_SNP [dm3] 3L_4952007_SNP [dm6]	A	G	3.669e^-5	0.857	INTRON Con	TF binding site mE1_TFBS_chinmo
3R	15466053	3R_15466053_SNP [dm3] 3R_19640331_SNP [dm6]	G	T	3.676e^-5	0.857	INTRON subdued
2R	6082595	2R_6082595_SNP [dm3] 2R_10195090_SNP [dm6]	T	C	3.732e^-5	0.857	INTERGENIC
3R	10183644	3R_10183644_SNP [dm3] 3R_14357922_SNP [dm6]	C	T	3.804e^-5	0.857	DOWNSTREAM CG31320 INTRON NK7.1
3L	2381180	3L_2381180_SNP [dm3] 3L_2381180_SNP [dm6]	G	C	3.846e^-5	0.857	INTRON CG45186
3R	15462495	3R_15462495_SNP [dm3] 3R_19636773_SNP [dm6]	T	A	3.856e^-5	0.857	DOWNSTREAM CG34138 INTRON subdued
3R	23460878	3R_23460878_SNP [dm3] 3R_27635156_SNP [dm6]	C	T	4.020e^-5	0.857	DOWNSTREAM Tusp INTRON CG5611	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4979552	3L_4979552_SNP [dm3] 3L_4979552_SNP [dm6]	C	T	4.036e^-5	0.857	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9377665	3R_9377665_SNP [dm3] 3R_13551943_SNP [dm6]	G	A	4.040e^-5	0.857	INTERGENIC
X	4463893	X_4463893_SNP [dm3] X_4569860_SNP [dm6]	T	G	4.065e^-5	0.857	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	6082599	2R_6082599_SNP [dm3] 2R_10195094_SNP [dm6]	A	T	4.072e^-5	0.857	INTERGENIC
3L	5432759	3L_5432759_INS [dm3] 3L_5439659_INS [dm6]	A	AA	4.089e^-5	0.857	UTR_3_PRIME CG34391
2R	6082598	2R_6082598_SNP [dm3] 2R_10195093_SNP [dm6]	G	T	4.099e^-5	0.857	INTERGENIC
2L	14145344	2L_14145344_SNP [dm3] 2L_14145344_SNP [dm6]	A	G	4.139e^-5	0.857	INTRON CG17341
2R	13728961	2R_13728961_SNP [dm3] 2R_17841456_SNP [dm6]	T	C	4.299e^-5	0.857	UTR_3_PRIME grh DOWNSTREAM grh
3L	5063397	3L_5063397_SNP [dm3] 3L_5063397_SNP [dm6]	T	C	4.316e^-5	0.857	INTRON Con
2R	8699501	2R_8699501_SNP [dm3] 2R_12811996_SNP [dm6]	G	T	4.371e^-5	0.857	INTERGENIC
X	16065065	X_16065065_DEL [dm3] X_16171032_DEL [dm6]	AACTGTATCTGTGCGCA...	A	4.372e^-5	0.857	INTERGENIC
3R	26745266	3R_26745266_SNP [dm3] 3R_30919544_SNP [dm6]	T	G	4.386e^-5	0.857	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13556507	3R_13556507_SNP [dm3] 3R_17730785_SNP [dm6]	A	G	4.389e^-5	0.857	SYNONYMOUS_CODING Lgr1
3L	5759701	3L_5759701_SNP [dm3] 3L_5766601_SNP [dm6]	T	C	4.427e^-5	0.857	SYNONYMOUS_CODING Txl UPSTREAM CG10576 DOWNSTREAM Ppat-Dpck	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	18260231	2R_18260231_SNP [dm3] 2R_22372726_SNP [dm6]	A	G	4.464e^-5	0.857	DOWNSTREAM CR44759 INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	8386486	3L_8386486_SNP [dm3] 3L_8393386_SNP [dm6]	G	C	4.495e^-5	0.857	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	17595842	3L_17595842_DEL [dm3] 3L_17602742_DEL [dm6]	TT	T	4.506e^-5	0.857	UTR_5_PRIME Eip74EF
3L	8384729	3L_8384729_SNP [dm3] 3L_8391629_SNP [dm6]	C	A	4.634e^-5	0.857	SYNONYMOUS_CODING Jon66Ci DOWNSTREAM ImpE1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	4.658e^-5	0.857	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	9389752	3R_9389752_DEL [dm3] 3R_13564030_DEL [dm6]	CC	C	4.712e^-5	0.857	INTERGENIC
2R	18260132	2R_18260132_SNP [dm3] 2R_22372627_SNP [dm6]	A	C	4.736e^-5	0.857	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
3L	8040305	3L_8040305_SNP [dm3] 3L_8047205_SNP [dm6]	C	T	4.753e^-5	0.857	INTRON nmo	TF binding site mE1_TFBS_cad
3R	8286537	3R_8286537_SNP [dm3] 3R_12460815_SNP [dm6]	C	T	4.788e^-5	0.857	UPSTREAM CG5961 INTRON CG12267	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15131608	2L_15131608_INS [dm3] 2L_15131608_INS [dm6]	A	AG	4.807e^-5	0.857	DOWNSTREAM tRNA:L:35C INTERGENIC
3L	14140283	3L_14140283_SNP [dm3] 3L_14147183_SNP [dm6]	A	C	4.809e^-5	0.857	INTERGENIC	regulatory region REDfly_CRMs
2L	617998	2L_617998_SNP [dm3] 2L_617998_SNP [dm6]	C	T	4.902e^-5	0.857	INTERGENIC
3L	8605955	3L_8605955_SNP [dm3] 3L_8612855_SNP [dm6]	T	A	4.956e^-5	0.857	INTRON CG6282
2R	18440625	2R_18440625_SNP [dm3] 2R_22553120_SNP [dm6]	G	A	4.966e^-5	0.857	INTRON px
3R	9384908	3R_9384908_SNP [dm3] 3R_13559186_SNP [dm6]	C	A	4.983e^-5	0.857	INTERGENIC
3L	18831267	3L_18831267_SNP [dm3] 3L_18838167_SNP [dm6]	G	C	5.162e^-5	0.88	INTRON Indy	TF binding site mE1_TFBS_zfh1
3R	26753411	3R_26753411_SNP [dm3] 3R_30927689_SNP [dm6]	G	A	5.315e^-5	0.888	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	10357325	3L_10357325_SNP [dm3] 3L_10364225_SNP [dm6]	G	A	5.344e^-5	0.888	UPSTREAM CR44327 EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18136623	2R_18136623_SNP [dm3] 2R_22249118_SNP [dm6]	T	C	5.377e^-5	0.888	INTRON dve	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA mE1_TFBS_sens
3R	21905180	3R_21905180_SNP [dm3] 3R_26079458_SNP [dm6]	C	T	5.397e^-5	0.888	SYNONYMOUS_CODING dys
3R	25821908	3R_25821908_SNP [dm3] 3R_29996186_SNP [dm6]	T	A	5.619e^-5	0.89	NON_SYNONYMOUS_CODING Sas-6 UPSTREAM CG7903 DOWNSTREAM CG15525	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13060457	3L_13060457_SNP [dm3] 3L_13067357_SNP [dm6]	G	A	5.654e^-5	0.89	INTERGENIC
3L	8889273	3L_8889273_SNP [dm3] 3L_8896173_SNP [dm6]	G	A	5.687e^-5	0.89	SYNONYMOUS_CODING TrpA1	TF binding site mE1_TFBS_cad
3L	8889277	3L_8889277_SNP [dm3] 3L_8896177_SNP [dm6]	G	A	5.687e^-5	0.89	SYNONYMOUS_CODING TrpA1	TF binding site mE1_TFBS_cad
3L	9566698	3L_9566698_SNP [dm3] 3L_9573598_SNP [dm6]	T	C	5.809e^-5	0.89	INTRON CG42673
3R	15475476	3R_15475476_INS [dm3] 3R_19649754_INS [dm6]	GT	AAATC	5.830e^-5	0.89		TF binding site mE1_TFBS_sens
2R	15269395	2R_15269395_SNP [dm3] 2R_19381890_SNP [dm6]	C	T	5.942e^-5	0.89	SYNONYMOUS_CODING CG10073
3R	9395966	3R_9395966_SNP [dm3] 3R_13570244_SNP [dm6]	A	C	6.013e^-5	0.89	INTERGENIC
3R	24824142	3R_24824142_SNP [dm3] 3R_28998420_SNP [dm6]	A	G	6.039e^-5	0.89	INTRON wat
X	9384245	X_9384245_SNP [dm3] X_9490212_SNP [dm6]	A	C	6.044e^-5	0.89	INTRON mgl
2L	15131604	2L_15131604_SNP [dm3] 2L_15131604_SNP [dm6]	A	C	6.062e^-5	0.89	DOWNSTREAM tRNA:L:35C INTERGENIC
2L	15131606	2L_15131606_INS [dm3] 2L_15131606_INS [dm6]	T	TATATATATC	6.062e^-5	0.89	DOWNSTREAM tRNA:L:35C INTERGENIC
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	6.102e^-5	0.89	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	13188956	2R_13188956_SNP [dm3] 2R_17301451_SNP [dm6]	A	G	6.124e^-5	0.89	INTRON mbl
X	3142641	X_3142641_SNP [dm3] X_3248608_SNP [dm6]	T	A	6.156e^-5	0.89	UTR_3_PRIME Pig1 UPSTREAM Sgs4 INTRON dnc
3R	10786630	3R_10786630_SNP [dm3] 3R_14960908_SNP [dm6]	A	G	6.170e^-5	0.89	INTERGENIC
3R	15820490	3R_15820490_SNP [dm3] 3R_19994768_SNP [dm6]	C	T	6.258e^-5	0.894	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13728965	2R_13728965_SNP [dm3] 2R_17841460_SNP [dm6]	T	C	6.355e^-5	0.894	UTR_3_PRIME grh DOWNSTREAM grh
X	3215464	X_3215464_SNP [dm3] X_3321431_SNP [dm6]	G	A	6.468e^-5	0.894	INTRON CR44886 & 1 other
3L	10357352	3L_10357352_SNP [dm3] 3L_10364252_SNP [dm6]	T	A	6.535e^-5	0.894	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24824152	3R_24824152_SNP [dm3] 3R_28998430_SNP [dm6]	G	C	6.726e^-5	0.894	INTRON wat
2R	6213471	2R_6213471_SNP [dm3] 2R_10325966_SNP [dm6]	G	C	6.768e^-5	0.894	INTRON CG42732
3L	2091374	3L_2091374_SNP [dm3] 3L_2091374_SNP [dm6]	G	A	6.878e^-5	0.894	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15601715	2R_15601715_SNP [dm3] 2R_19714210_SNP [dm6]	C	T	6.880e^-5	0.894	SYNONYMOUS_CODING CG8517 DOWNSTREAM Obp56f	TF binding site mE1_TFBS_cad
2L	4952548	2L_4952548_SNP [dm3] 2L_4952548_SNP [dm6]	G	A	6.908e^-5	0.894	SYNONYMOUS_CODING Jon25Bii	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6081312	2R_6081312_SNP [dm3] 2R_10193807_SNP [dm6]	C	T	6.953e^-5	0.894	INTERGENIC
2R	12614586	2R_12614586_INS [dm3] 2R_16727081_INS [dm6]	T	TGTATT	7.019e^-5	0.894	INTRON CG30463	TF binding site mE1_TFBS_inv
2L	15131617	2L_15131617_INS [dm3] 2L_15131617_INS [dm6]	A	AGAAACATA	7.025e^-5	0.894	DOWNSTREAM tRNA:L:35C INTERGENIC
2R	15269428	2R_15269428_SNP [dm3] 2R_19381923_SNP [dm6]	A	T	7.130e^-5	0.894	SYNONYMOUS_CODING CG10073
3L	16628581	3L_16628581_SNP [dm3] 3L_16635481_SNP [dm6]	A	T	7.152e^-5	0.894	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1197432	3L_1197432_SNP [dm3] 3L_1197432_SNP [dm6]	C	T	7.158e^-5	0.894	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8040286	3L_8040286_SNP [dm3] 3L_8047186_SNP [dm6]	G	C	7.178e^-5	0.894	INTRON nmo	TF binding site mE1_TFBS_cad
3L	5486796	3L_5486796_SNP [dm3] 3L_5493696_SNP [dm6]	G	T	7.179e^-5	0.894	EXON CR44520
2R	6082618	2R_6082618_SNP [dm3] 2R_10195113_SNP [dm6]	T	C	7.195e^-5	0.894	INTERGENIC
X	17655599	X_17655599_SNP [dm3] X_17761566_SNP [dm6]	C	A	7.210e^-5	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8053579	3R_8053579_SNP [dm3] 3R_12227857_SNP [dm6]	G	A	7.212e^-5	0.894	INTERGENIC
3L	10358850	3L_10358850_SNP [dm3] 3L_10365750_SNP [dm6]	G	T	7.278e^-5	0.894	DOWNSTREAM mir-276a EXON CR44327	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
X	19014613	X_19014613_SNP [dm3] X_19120580_SNP [dm6]	C	T	7.396e^-5	0.894	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10616797	3R_10616797_SNP [dm3] 3R_14791075_SNP [dm6]	C	T	7.406e^-5	0.894	SYNONYMOUS_CODING jvl	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	18015452	2R_18015452_SNP [dm3] 2R_22127947_SNP [dm6]	A	G	7.421e^-5	0.894	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad
2L	852746	2L_852746_SNP [dm3] 2L_852746_SNP [dm6]	C	T	7.434e^-5	0.894	UPSTREAM kraken & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16363317	2R_16363317_SNP [dm3] 2R_20475812_SNP [dm6]	C	T	7.531e^-5	0.894	INTRON CG12484
3R	16534400	3R_16534400_SNP [dm3] 3R_20708678_SNP [dm6]	G	A	7.551e^-5	0.894	INTRON Oamb
2R	13188976	2R_13188976_DEL [dm3] 2R_17301471_DEL [dm6]	ATAGAGAATCATGA...	A	7.562e^-5	0.894	INTRON mbl
2R	18053144	2R_18053144_SNP [dm3] 2R_22165639_SNP [dm6]	A	G	7.619e^-5	0.894	INTRON a
2L	17604066	2L_17604066_SNP [dm3] 2L_17604066_SNP [dm6]	A	C	7.624e^-5	0.894	UTR_3_PRIME Sytalpha DOWNSTREAM Sytalpha
2L	8072345	2L_8072345_SNP [dm3] 2L_8072345_SNP [dm6]	G	C	7.743e^-5	0.896	SYNONYMOUS_CODING MED20 UPSTREAM poe & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	15466181	2L_15466181_SNP [dm3] 2L_15466181_SNP [dm6]	T	C	7.799e^-5	0.896	INTERGENIC
2R	14220469	2R_14220469_SNP [dm3] 2R_18332964_SNP [dm6]	G	T	7.837e^-5	0.896	INTRON sbb
X	14008399	X_14008399_SNP [dm3] X_14114366_SNP [dm6]	A	G	7.843e^-5	0.896	EXON CR44657	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8316132	2L_8316132_SNP [dm3] 2L_8316132_SNP [dm6]	C	T	7.962e^-5	0.896	SPLICE_SITE_REGION CG7806 DOWNSTREAM mtsh INTRON CG7806
X	4539785	X_4539785_SNP [dm3] X_4645752_SNP [dm6]	T	A	7.976e^-5	0.896	UTR_3_PRIME HLH4C UPSTREAM CG3062	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10358861	3L_10358861_SNP [dm3] 3L_10365761_SNP [dm6]	T	C	7.978e^-5	0.896	DOWNSTREAM mir-276a EXON CR44327	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3221150	2L_3221150_INS [dm3] 2L_3221150_INS [dm6]	A	ACCCGTCC	8.137e^-5	0.902	INTERGENIC
2L	16543887	2L_16543887_SNP [dm3] 2L_16543887_SNP [dm6]	C	A	8.275e^-5	0.902	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12614600	2R_12614600_SNP [dm3] 2R_16727095_SNP [dm6]	G	A	8.353e^-5	0.902	INTRON CG30463	TF binding site mE1_TFBS_inv
3R	2306995	3R_2306995_SNP [dm3] 3R_6481273_SNP [dm6]	T	C	8.492e^-5	0.902	INTRON CG15186
2L	19814474	2L_19814474_SNP [dm3] 2L_19814474_SNP [dm6]	T	C	8.520e^-5	0.902	SPLICE_SITE_REGION CG13962 UTR_5_PRIME CG13962 INTRON sick
3R	25114878	3R_25114878_SNP [dm3] 3R_29289156_SNP [dm6]	G	T	8.535e^-5	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15466180	2L_15466180_SNP [dm3] 2L_15466180_SNP [dm6]	C	A	8.614e^-5	0.902	INTERGENIC
3R	10659273	3R_10659273_SNP [dm3] 3R_14833551_SNP [dm6]	G	A	8.702e^-5	0.902	INTRON btsz
2R	17715919	2R_17715919_SNP [dm3] 2R_21828414_SNP [dm6]	C	T	8.738e^-5	0.902	NON_SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad
3L	15233352	3L_15233352_SNP [dm3] 3L_15240252_SNP [dm6]	T	C	8.743e^-5	0.902	UTR_3_PRIME Tollo	TF binding site mE1_TFBS_cad
2L	7801656	2L_7801656_INS [dm3] 2L_7801656_INS [dm6]	T	TT	8.796e^-5	0.902	UTR_3_PRIME r2d2 DOWNSTREAM cdc14 & 1 other
2L	14021464	2L_14021464_SNP [dm3] 2L_14021464_SNP [dm6]	T	C	8.798e^-5	0.902	DOWNSTREAM CR45352 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18035787	2R_18035787_SNP [dm3] 2R_22148282_SNP [dm6]	C	T	8.984e^-5	0.902	INTRON a
X	16046104	X_16046104_SNP [dm3] X_16152071_SNP [dm6]	C	T	8.989e^-5	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	10144138	3R_10144138_SNP [dm3] 3R_14318416_SNP [dm6]	C	T	9.025e^-5	0.902	SYNONYMOUS_CODING pr-set7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2598881	2L_2598881_SNP [dm3] 2L_2598881_SNP [dm6]	G	C	9.031e^-5	0.902	EXON CR44790
2L	3494493	2L_3494493_SNP [dm3] 2L_3494493_SNP [dm6]	G	A	9.170e^-5	0.902	UTR_3_PRIME tim
3L	5063325	3L_5063325_SNP [dm3] 3L_5063325_SNP [dm6]	T	C	9.284e^-5	0.902	INTRON Con
2R	1612548	2R_1612548_DEL [dm3] 2R_5725043_DEL [dm6]	AAGGAATGCGTTATGTTTCA...	A	9.375e^-5	0.902	INTRON ap	TF binding site mE1_TFBS_HSA
3L	4979575	3L_4979575_SNP [dm3] 3L_4979575_SNP [dm6]	G	A	9.387e^-5	0.902	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9383032	3R_9383032_SNP [dm3] 3R_13557310_SNP [dm6]	G	A	9.494e^-5	0.902	INTERGENIC
3L	18747898	3L_18747898_SNP [dm3] 3L_18754798_SNP [dm6]	T	C	9.691e^-5	0.902	INTRON ftz-f1
X	5533526	X_5533526_SNP [dm3] X_5639493_SNP [dm6]	A	C	9.697e^-5	0.902	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15983331	2R_15983331_SNP [dm3] 2R_20095826_SNP [dm6]	G	A	9.738e^-5	0.902	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6695943	2L_6695943_SNP [dm3] 2L_6695943_SNP [dm6]	G	A	9.853e^-5	0.902	INTRON Tsp
2L	8323962	2L_8323962_SNP [dm3] 2L_8323962_SNP [dm6]	C	T	9.928e^-5	0.902	INTRON CG7781
X	19923296	X_19923296_INS [dm3] X_20029263_INS [dm6]	C	CC	9.944e^-5	0.902	INTRON Dop2R
3L	8880104	3L_8880104_SNP [dm3] 3L_8887004_SNP [dm6]	T	C	9.964e^-5	0.902	INTRON dally
3L	4979335	3L_4979335_SNP [dm3] 3L_4979335_SNP [dm6]	A	T	1.017e^-4	0.902	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2778318	3R_2778318_SNP [dm3] 3R_6952596_SNP [dm6]	C	G	1.018e^-4	0.902	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3R	15807643	3R_15807643_SNP [dm3] 3R_19981921_SNP [dm6]	C	T	1.018e^-4	0.902	INTRON Hs6st	TF binding site BDTNP1_TFBS_Med
2L	3608832	2L_3608832_SNP [dm3] 2L_3608832_SNP [dm6]	T	A	1.023e^-4	0.902	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8889191	3L_8889191_SNP [dm3] 3L_8896091_SNP [dm6]	G	A	1.031e^-4	0.902	INTRON TrpA1	TF binding site mE1_TFBS_cad
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	1.041e^-4	0.902	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
3R	15462327	3R_15462327_SNP [dm3] 3R_19636605_SNP [dm6]	T	G	1.042e^-4	0.902	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
2L	12282411	2L_12282411_SNP [dm3] 2L_12282411_SNP [dm6]	C	T	1.043e^-4	0.902	INTRON aret
3L	4141299	3L_4141299_SNP [dm3] 3L_4141299_SNP [dm6]	T	A	1.043e^-4	0.902	UTR_3_PRIME Ras64B UPSTREAM Akh
3R	15466104	3R_15466104_SNP [dm3] 3R_19640382_SNP [dm6]	T	G	1.049e^-4	0.902	INTRON subdued
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	1.062e^-4	0.902	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	11102749	2L_11102749_SNP [dm3] 2L_11102749_SNP [dm6]	G	A	1.064e^-4	0.902	SYNONYMOUS_CODING Reps
3L	2379605	3L_2379605_DEL [dm3] 3L_2379605_DEL [dm6]	ATTTCCTTATTTGTTTATAA...	A	1.070e^-4	0.902	INTRON CG45186
3L	5953573	3L_5953573_SNP [dm3] 3L_5960473_SNP [dm6]	G	C	1.072e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	16534389	3R_16534389_SNP [dm3] 3R_20708667_SNP [dm6]	C	T	1.077e^-4	0.902	INTRON Oamb
3L	2503397	3L_2503397_SNP [dm3] 3L_2503397_SNP [dm6]	A	G	1.079e^-4	0.902	UTR_5_PRIME CG16758 UPSTREAM CR45425 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12614577	2R_12614577_INS [dm3] 2R_16727072_INS [dm6]	A	ACATA	1.081e^-4	0.902	INTRON CG30463	TF binding site mE1_TFBS_inv
2R	7168304	2R_7168304_SNP [dm3] 2R_11280799_SNP [dm6]	G	A	1.084e^-4	0.902	UTR_3_PRIME Vhl & 1 other DOWNSTREAM Vhl
3L	9165942	3L_9165942_SNP [dm3] 3L_9172842_SNP [dm6]	G	A	1.086e^-4	0.902	INTRON Rdl
3L	20309167	3L_20309167_INS [dm3] 3L_20316067_INS [dm6]	C	CC	1.088e^-4	0.902	UTR_3_PRIME alphaSnap INTRON CR43875
X	9384252	X_9384252_SNP [dm3] X_9490219_SNP [dm6]	C	A	1.089e^-4	0.902	INTRON mgl
3L	8386441	3L_8386441_SNP [dm3] 3L_8393341_SNP [dm6]	G	A	1.089e^-4	0.902	SYNONYMOUS_CODING Jon66Cii DOWNSTREAM Jon66Ci	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	9385695	3R_9385695_SNP [dm3] 3R_13559973_SNP [dm6]	T	A	1.098e^-4	0.902	INTERGENIC
X	20157116	X_20157116_SNP [dm3] X_20286089_SNP [dm6]	G	T	1.108e^-4	0.902	INTERGENIC
2L	21370095	2L_21370095_SNP [dm3] 2L_21370095_SNP [dm6]	A	C	1.110e^-4	0.902	UPSTREAM Gr39b INTERGENIC
2L	6892407	2L_6892407_SNP [dm3] 2L_6892407_SNP [dm6]	C	T	1.115e^-4	0.902	INTRON Nlg2
3L	12892441	3L_12892441_SNP [dm3] 3L_12899341_SNP [dm6]	A	G	1.131e^-4	0.902	INTERGENIC
3L	8251936	3L_8251936_SNP [dm3] 3L_8258836_SNP [dm6]	C	G	1.131e^-4	0.902	INTRON Dscam4
3L	11849025	3L_11849025_SNP [dm3] 3L_11855925_SNP [dm6]	A	C	1.132e^-4	0.902	INTRON CG44837
X	6745241	X_6745241_DEL [dm3] X_6851208_DEL [dm6]	TTTGT	T	1.152e^-4	0.902	UTR_3_PRIME CG4558 DOWNSTREAM CG14434 INTRON CG4558
2L	615825	2L_615825_SNP [dm3] 2L_615825_SNP [dm6]	T	A	1.159e^-4	0.902	INTERGENIC
2R	16058187	2R_16058187_SNP [dm3] 2R_20170682_SNP [dm6]	G	C	1.162e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6240257	2R_6240257_SNP [dm3] 2R_10352752_SNP [dm6]	A	T	1.165e^-4	0.902	UTR_5_PRIME CG43178 UTR_3_PRIME CG43171 & 1 other UPSTREAM CG43172 & 2 others INTRON CG42732
2R	15475210	2R_15475210_SNP [dm3] 2R_19587705_SNP [dm6]	G	A	1.166e^-4	0.902	UTR_3_PRIME CG42878 INTRON sm
3R	23425812	3R_23425812_SNP [dm3] 3R_27600090_SNP [dm6]	T	C	1.172e^-4	0.902	SYNONYMOUS_CODING dsd	TF binding site mE1_TFBS_cad
3L	5486873	3L_5486873_SNP [dm3] 3L_5493773_SNP [dm6]	A	C	1.175e^-4	0.902	EXON CR44520
X	2934007	X_2934007_SNP [dm3] X_3039974_SNP [dm6]	T	C	1.197e^-4	0.902	INTRON kirre
3L	10358250	3L_10358250_DEL [dm3] 3L_10365150_DEL [dm6]	GTTG	G	1.200e^-4	0.902	UPSTREAM mir-276a EXON CR44327
3L	11670166	3L_11670166_SNP [dm3] 3L_11677066_SNP [dm6]	A	T	1.202e^-4	0.902	INTRON CG32085
2R	12358244	2R_12358244_SNP [dm3] 2R_16470739_SNP [dm6]	C	T	1.205e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5953566	3L_5953566_SNP [dm3] 3L_5960466_SNP [dm6]	A	G	1.205e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2380964	3L_2380964_SNP [dm3] 3L_2380964_SNP [dm6]	C	T	1.207e^-4	0.902	INTRON CG45186
3R	7411305	3R_7411305_SNP [dm3] 3R_11585583_SNP [dm6]	C	A	1.208e^-4	0.902	DOWNSTREAM CG6791 & 1 other INTRON CG6791
2L	21019909	2L_21019909_DEL [dm3] 2L_21019909_DEL [dm6]	GTACAACAG	G	1.218e^-4	0.902	INTRON CG42238
3R	14381755	3R_14381755_SNP [dm3] 3R_18556033_SNP [dm6]	A	T	1.219e^-4	0.902	INTERGENIC
3R	15466061	3R_15466061_SNP [dm3] 3R_19640339_SNP [dm6]	C	T	1.220e^-4	0.902	INTRON subdued
3R	15466119	3R_15466119_SNP [dm3] 3R_19640397_SNP [dm6]	C	T	1.229e^-4	0.902	INTRON subdued
X	17655648	X_17655648_SNP [dm3] X_17761615_SNP [dm6]	A	T	1.251e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13753210	3L_13753210_SNP [dm3] 3L_13760110_SNP [dm6]	G	A	1.252e^-4	0.902	INTRON bru-3
2L	8069205	2L_8069205_SNP [dm3] 2L_8069205_SNP [dm6]	T	A	1.257e^-4	0.902	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_sens
3L	5486791	3L_5486791_INS [dm3] 3L_5493691_INS [dm6]	A	AAA	1.258e^-4	0.902	EXON CR44520
2L	6368875	2L_6368875_SNP [dm3] 2L_6368875_SNP [dm6]	C	T	1.275e^-4	0.902	SYNONYMOUS_CODING CG9505	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10361590	3L_10361590_SNP [dm3] 3L_10368490_SNP [dm6]	A	T	1.278e^-4	0.902	INTERGENIC
3L	2737459	3L_2737459_SNP [dm3] 3L_2737459_SNP [dm6]	G	A	1.286e^-4	0.902	INTRON Mrtf
3R	15467588	3R_15467588_SNP [dm3] 3R_19641866_SNP [dm6]	T	G	1.288e^-4	0.902	UPSTREAM subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl
3L	10357916	3L_10357916_SNP [dm3] 3L_10364816_SNP [dm6]	G	A	1.288e^-4	0.902	UPSTREAM mir-276a EXON CR44327
2R	10511689	2R_10511689_SNP [dm3] 2R_14624184_SNP [dm6]	C	A	1.306e^-4	0.902	UPSTREAM snoRNA:Or-CD4 DOWNSTREAM snoRNA:Me28S-A992 & 3 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15442503	2R_15442503_SNP [dm3] 2R_19554998_SNP [dm6]	T	C	1.308e^-4	0.902	INTRON sm
2R	19580773	2R_19580773_SNP [dm3] 2R_23693250_SNP [dm6]	G	C	1.312e^-4	0.902	NON_SYNONYMOUS_CODING CG30183 UPSTREAM angel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5382237	2L_5382237_SNP [dm3] 2L_5382237_SNP [dm6]	T	C	1.328e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6913131	3L_6913131_SNP [dm3] 3L_6920031_SNP [dm6]	T	C	1.331e^-4	0.902	INTERGENIC
3L	10358799	3L_10358799_SNP [dm3] 3L_10365699_SNP [dm6]	T	C	1.332e^-4	0.902	DOWNSTREAM mir-276a EXON CR44327	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	12601196	2L_12601196_SNP [dm3] 2L_12601196_SNP [dm6]	C	A	1.335e^-4	0.902	INTRON nub	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12614524	2R_12614524_INS [dm3] 2R_16727019_INS [dm6]	C	CGTTC	1.337e^-4	0.902	INTRON CG30463
2R	14932986	2R_14932986_INS [dm3] 2R_19045481_INS [dm6]	G	GG	1.338e^-4	0.902	INTERGENIC
3R	9386299	3R_9386299_SNP [dm3] 3R_13560577_SNP [dm6]	G	A	1.349e^-4	0.902	INTERGENIC
2R	15658328	2R_15658328_SNP [dm3] 2R_19770823_SNP [dm6]	C	A	1.357e^-4	0.902	SPLICE_SITE_REGION Or56a INTRON Or56a
2R	14821505	2R_14821505_SNP [dm3] 2R_18934000_SNP [dm6]	C	T	1.369e^-4	0.902	INTRON sano
3L	10357303	3L_10357303_SNP [dm3] 3L_10364203_SNP [dm6]	T	A	1.373e^-4	0.902	UPSTREAM CR44327 EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	4493189	3L_4493189_SNP [dm3] 3L_4493189_SNP [dm6]	C	A	1.375e^-4	0.902	INTERGENIC
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	1.381e^-4	0.902	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	1.386e^-4	0.902	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	7263561	3R_7263561_SNP [dm3] 3R_11437839_SNP [dm6]	A	C	1.391e^-4	0.902	UTR_5_PRIME CG17230 UTR_3_PRIME sals DOWNSTREAM CG5281	TF binding site BDTNP1_TFBS_Med
2R	8790544	2R_8790544_SNP [dm3] 2R_12903039_SNP [dm6]	C	G	1.391e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12626318	3L_12626318_SNP [dm3] 3L_12633218_SNP [dm6]	T	C	1.393e^-4	0.902	INTRON CR32111	TF binding site mE1_TFBS_cad
2R	6085847	2R_6085847_SNP [dm3] 2R_10198342_SNP [dm6]	G	T	1.398e^-4	0.902	INTRON CG34221
3R	19214550	3R_19214550_SNP [dm3] 3R_23388828_SNP [dm6]	A	G	1.398e^-4	0.902	NON_SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6361807	2L_6361807_SNP [dm3] 2L_6361807_SNP [dm6]	T	A	1.402e^-4	0.902	DOWNSTREAM CR44778 INTERGENIC
2R	10423347	2R_10423347_SNP [dm3] 2R_14535842_SNP [dm6]	C	T	1.403e^-4	0.902	INTRON ttv
2R	6563581	2R_6563581_SNP [dm3] 2R_10676076_SNP [dm6]	C	T	1.405e^-4	0.902	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3494431	2L_3494431_SNP [dm3] 2L_3494431_SNP [dm6]	T	A	1.408e^-4	0.902	UTR_3_PRIME tim
3R	9384934	3R_9384934_SNP [dm3] 3R_13559212_SNP [dm6]	A	T	1.408e^-4	0.902	INTERGENIC
2R	18260119	2R_18260119_SNP [dm3] 2R_22372614_SNP [dm6]	T	C	1.418e^-4	0.902	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	19619930	2R_19619930_SNP [dm3] 2R_23732407_SNP [dm6]	C	T	1.422e^-4	0.902	SYNONYMOUS_CODING Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	16232878	2L_16232878_SNP [dm3] 2L_16232878_SNP [dm6]	G	A	1.422e^-4	0.902	INTRON CG42817
2R	8928543	2R_8928543_SNP [dm3] 2R_13041038_SNP [dm6]	T	C	1.432e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5486817	3L_5486817_SNP [dm3] 3L_5493717_SNP [dm6]	T	C	1.435e^-4	0.902	EXON CR44520
3L	12626326	3L_12626326_SNP [dm3] 3L_12633226_SNP [dm6]	A	T	1.451e^-4	0.902	INTRON CR32111	TF binding site mE1_TFBS_cad
X	20396997	X_20396997_DEL [dm3] X_20525970_DEL [dm6]	TA	T	1.459e^-4	0.902	INTERGENIC	transposable element FlyBase
3R	25478641	3R_25478641_INS [dm3] 3R_29652919_INS [dm6]	C	CCC	1.465e^-4	0.902	INTRON Dop1R2
3L	10364115	3L_10364115_SNP [dm3] 3L_10371015_SNP [dm6]	C	T	1.468e^-4	0.902	INTERGENIC
3L	5486191	3L_5486191_SNP [dm3] 3L_5493091_SNP [dm6]	G	A	1.476e^-4	0.902	DOWNSTREAM CR44520 INTERGENIC
3L	6913150	3L_6913150_SNP [dm3] 3L_6920050_SNP [dm6]	C	A	1.477e^-4	0.902	INTERGENIC
3L	6711401	3L_6711401_SNP [dm3] 3L_6718301_SNP [dm6]	T	C	1.486e^-4	0.902	INTRON ple
2R	15690713	2R_15690713_SNP [dm3] 2R_19803208_SNP [dm6]	C	G	1.489e^-4	0.902	DOWNSTREAM tRNA:K2:56EF INTERGENIC
3R	15644674	3R_15644674_SNP [dm3] 3R_19818952_SNP [dm6]	C	T	1.507e^-4	0.902	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14222823	2R_14222823_SNP [dm3] 2R_18335318_SNP [dm6]	C	A	1.510e^-4	0.902	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	22333242	3L_22333242_SNP [dm3] 3L_22340142_SNP [dm6]	A	G	1.514e^-4	0.902	INTRON Ten-m	TF binding site mE1_TFBS_HSA
3L	7277226	3L_7277226_SNP [dm3] 3L_7284126_SNP [dm6]	A	G	1.520e^-4	0.902	INTRON unc-13-4A
3L	8866948	3L_8866948_SNP [dm3] 3L_8873848_SNP [dm6]	G	A	1.524e^-4	0.902	INTRON dally
3L	12195855	3L_12195855_SNP [dm3] 3L_12202755_SNP [dm6]	C	T	1.527e^-4	0.902	INTRON Adk1
2L	579822	2L_579822_SNP [dm3] 2L_579822_SNP [dm6]	C	T	1.530e^-4	0.902	DOWNSTREAM Pph13 INTERGENIC
X	7803518	X_7803518_SNP [dm3] X_7909485_SNP [dm6]	C	G	1.533e^-4	0.902	SYNONYMOUS_CODING CG1444	TF binding site BDTNP1_TFBS_dl
2R	13188505	2R_13188505_DEL [dm3] 2R_17301000_DEL [dm6]	GAAAGAG	G	1.534e^-4	0.902	INTRON mbl	TF binding site mE1_TFBS_inv
3L	10377578	3L_10377578_SNP [dm3] 3L_10384478_SNP [dm6]	A	C	1.537e^-4	0.902	INTERGENIC
X	3226219	X_3226219_SNP [dm3] X_3332186_SNP [dm6]	C	T	1.539e^-4	0.902	INTRON CR44886 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	3565343	3L_3565343_SNP [dm3] 3L_3565343_SNP [dm6]	G	C	1.549e^-4	0.902	INTRON Eip63E
3R	19623204	3R_19623204_SNP [dm3] 3R_23797482_SNP [dm6]	C	T	1.550e^-4	0.902	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad
2R	6798077	2R_6798077_SNP [dm3] 2R_10910572_SNP [dm6]	G	C	1.558e^-4	0.902	DOWNSTREAM Obp47a INTERGENIC
2R	6798092	2R_6798092_SNP [dm3] 2R_10910587_SNP [dm6]	G	A	1.558e^-4	0.902	DOWNSTREAM Obp47a INTERGENIC
3L	13397468	3L_13397468_SNP [dm3] 3L_13404368_SNP [dm6]	G	A	1.561e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3L	15234070	3L_15234070_SNP [dm3] 3L_15240970_SNP [dm6]	C	A	1.563e^-4	0.902	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14533827	3R_14533827_SNP [dm3] 3R_18708105_SNP [dm6]	A	T	1.565e^-4	0.902	INTRON VAChT & 1 other
3R	14533860	3R_14533860_INS [dm3] 3R_18708138_INS [dm6]	C	CGATATATATA...	1.565e^-4	0.902	INTRON VAChT & 1 other
2L	7033699	2L_7033699_SNP [dm3] 2L_7033699_SNP [dm6]	G	T	1.566e^-4	0.902	INTRON CG11266	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	6253419	2R_6253419_SNP [dm3] 2R_10365914_SNP [dm6]	G	T	1.568e^-4	0.902	UPSTREAM CG42732 INTRON CG42732
2L	12382449	2L_12382449_SNP [dm3] 2L_12382449_SNP [dm6]	A	T	1.568e^-4	0.902	INTRON bru-2
2R	8928540	2R_8928540_SNP [dm3] 2R_13041035_SNP [dm6]	C	A	1.570e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	14810933	X_14810933_SNP [dm3] X_14916900_SNP [dm6]	C	A	1.577e^-4	0.902	SYNONYMOUS_CODING Eo INTRON Flo2
3R	19214076	3R_19214076_SNP [dm3] 3R_23388354_SNP [dm6]	C	T	1.579e^-4	0.902	DOWNSTREAM CG31515 INTERGENIC	TF binding site mE1_TFBS_inv
3L	14140537	3L_14140537_SNP [dm3] 3L_14147437_SNP [dm6]	T	C	1.579e^-4	0.902	INTERGENIC	regulatory region REDfly_CRMs
3R	15466067	3R_15466067_SNP [dm3] 3R_19640345_SNP [dm6]	A	C	1.582e^-4	0.902	INTRON subdued
3L	5283560	3L_5283560_SNP [dm3] 3L_5290460_SNP [dm6]	G	A	1.583e^-4	0.902	INTERGENIC
3R	15466057	3R_15466057_SNP [dm3] 3R_19640335_SNP [dm6]	T	A	1.586e^-4	0.902	INTRON subdued
2R	18260478	2R_18260478_SNP [dm3] 2R_22372973_SNP [dm6]	C	T	1.590e^-4	0.902	UTR_5_PRIME Liprin-gamma DOWNSTREAM CR44759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5929651	3L_5929651_SNP [dm3] 3L_5936551_SNP [dm6]	T	A	1.594e^-4	0.902	INTRON CG33993
2L	14193028	2L_14193028_SNP [dm3] 2L_14193028_SNP [dm6]	G	A	1.596e^-4	0.902	INTRON Dyrk2
3L	18830251	3L_18830251_SNP [dm3] 3L_18837151_SNP [dm6]	G	A	1.598e^-4	0.902	INTRON Indy	TF binding site mE1_TFBS_zfh1
3R	18331492	3R_18331492_SNP [dm3] 3R_22505770_SNP [dm6]	C	T	1.599e^-4	0.902	INTRON Octbeta1R
3R	9395985	3R_9395985_SNP [dm3] 3R_13570263_SNP [dm6]	G	A	1.600e^-4	0.902	INTERGENIC
3R	14533897	3R_14533897_SNP [dm3] 3R_18708175_SNP [dm6]	C	A	1.610e^-4	0.902	INTRON VAChT & 1 other
2R	7168470	2R_7168470_SNP [dm3] 2R_11280965_SNP [dm6]	T	C	1.614e^-4	0.902	UTR_3_PRIME Vhl & 1 other DOWNSTREAM Vhl
2R	8926920	2R_8926920_SNP [dm3] 2R_13039415_SNP [dm6]	T	C	1.640e^-4	0.902	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	3890875	2L_3890875_SNP [dm3] 2L_3890875_SNP [dm6]	G	A	1.640e^-4	0.902	UPSTREAM capu INTRON capu
3L	12047502	3L_12047502_SNP [dm3] 3L_12054402_SNP [dm6]	A	C	1.643e^-4	0.902	INTRON rols
2L	19824390	2L_19824390_SNP [dm3] 2L_19824390_SNP [dm6]	T	C	1.644e^-4	0.902	INTRON sick
3L	15233346	3L_15233346_SNP [dm3] 3L_15240246_SNP [dm6]	A	G	1.647e^-4	0.902	UTR_3_PRIME Tollo	TF binding site mE1_TFBS_cad
X	19737673	X_19737673_SNP [dm3] X_19843640_SNP [dm6]	A	G	1.648e^-4	0.902	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	5486829	3L_5486829_SNP [dm3] 3L_5493729_SNP [dm6]	C	T	1.663e^-4	0.902	EXON CR44520
2R	13867788	2R_13867788_SNP [dm3] 2R_17980283_SNP [dm6]	A	T	1.667e^-4	0.902	INTRON dpr13
2R	13867801	2R_13867801_SNP [dm3] 2R_17980296_SNP [dm6]	A	C	1.667e^-4	0.902	INTRON dpr13
3L	5486176	3L_5486176_SNP [dm3] 3L_5493076_SNP [dm6]	T	G	1.668e^-4	0.902	DOWNSTREAM CR44520 INTERGENIC
2L	4110394	2L_4110394_SNP [dm3] 2L_4110394_SNP [dm6]	A	T	1.678e^-4	0.902	INTRON ed
3L	16888117	3L_16888117_DEL [dm3] 3L_16895017_DEL [dm6]	CTGATAAATATTATAAAGAT...	C	1.678e^-4	0.902	INTRON Lmpt
3L	8880139	3L_8880139_DEL [dm3] 3L_8887039_DEL [dm6]	TC	A	1.680e^-4	0.902	INTRON dally
2R	3777346	2R_3777346_SNP [dm3] 2R_7889841_SNP [dm6]	C	T	1.682e^-4	0.902	UPSTREAM CG30377 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14533889	3R_14533889_SNP [dm3] 3R_18708167_SNP [dm6]	G	A	1.685e^-4	0.902	INTRON VAChT & 1 other
2R	13189221	2R_13189221_SNP [dm3] 2R_17301716_SNP [dm6]	T	C	1.689e^-4	0.902	INTRON mbl
3R	5825072	3R_5825072_SNP [dm3] 3R_9999350_SNP [dm6]	G	A	1.699e^-4	0.902	SYNONYMOUS_CODING Spn85F DOWNSTREAM CG5359	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16544079	2L_16544079_INS [dm3] 2L_16544079_INS [dm6]	A	AATAA	1.706e^-4	0.902	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	10659326	3R_10659326_SNP [dm3] 3R_14833604_SNP [dm6]	C	A	1.716e^-4	0.902	INTRON btsz
2L	8081261	2L_8081261_SNP [dm3] 2L_8081261_SNP [dm6]	C	A	1.717e^-4	0.902	INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17445221	X_17445221_SNP [dm3] X_17551188_SNP [dm6]	T	A	1.718e^-4	0.902	INTRON CG43658
2R	13184183	2R_13184183_SNP [dm3] 2R_17296678_SNP [dm6]	A	G	1.727e^-4	0.902	INTRON mbl
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	1.730e^-4	0.902	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	2941866	3L_2941866_SNP [dm3] 3L_2941866_SNP [dm6]	T	C	1.731e^-4	0.902	INTRON Shab
3R	17841837	3R_17841837_DEL [dm3] 3R_22016115_DEL [dm6]	CGTCTGG	C	1.736e^-4	0.902	UTR_3_PRIME CG6332 DOWNSTREAM CG6439	TF binding site mE1_TFBS_cad
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	1.743e^-4	0.902	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9382495	3R_9382495_SNP [dm3] 3R_13556773_SNP [dm6]	T	C	1.745e^-4	0.902	INTERGENIC
2R	16464383	2R_16464383_DEL [dm3] 2R_20576878_DEL [dm6]	AA	A	1.758e^-4	0.902	INTRON qsm
3L	16346392	3L_16346392_SNP [dm3] 3L_16353292_SNP [dm6]	G	T	1.768e^-4	0.902	UTR_3_PRIME Pdh DOWNSTREAM CG4933	TF binding site mE1_TFBS_sens
3L	5758649	3L_5758649_SNP [dm3] 3L_5765549_SNP [dm6]	T	G	1.772e^-4	0.902	UTR_5_PRIME CG10576 UPSTREAM Txl & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12651586	2L_12651586_SNP [dm3] 2L_12651586_SNP [dm6]	C	T	1.775e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15468625	3R_15468625_SNP [dm3] 3R_19642903_SNP [dm6]	T	A	1.783e^-4	0.902	UPSTREAM subdued DOWNSTREAM Vha13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	4099232	X_4099232_SNP [dm3] X_4205199_SNP [dm6]	G	A	1.790e^-4	0.902	INTRON Fas2
3L	10358527	3L_10358527_SNP [dm3] 3L_10365427_SNP [dm6]	G	A	1.799e^-4	0.902	DOWNSTREAM mir-276a EXON CR44327	TF binding site mE1_TFBS_zfh1
3L	12671321	3L_12671321_SNP [dm3] 3L_12678221_SNP [dm6]	T	C	1.804e^-4	0.902	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10424070	3L_10424070_SNP [dm3] 3L_10430970_SNP [dm6]	A	C	1.804e^-4	0.902	SYNONYMOUS_CODING Ir67b
2L	1218435	2L_1218435_INS [dm3] 2L_1218435_INS [dm6]	T	TG	1.812e^-4	0.902	UPSTREAM CR43263 & 1 other INTERGENIC
2L	20434250	2L_20434250_SNP [dm3] 2L_20434250_SNP [dm6]	C	G	1.814e^-4	0.902	INTRON CG31688
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	1.816e^-4	0.902	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	12358249	2R_12358249_SNP [dm3] 2R_16470744_SNP [dm6]	C	A	1.820e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1198495	3L_1198495_DEL [dm3] 3L_1198495_DEL [dm6]	TC	T	1.821e^-4	0.902	INTRON Aplip1
2R	13184459	2R_13184459_SNP [dm3] 2R_17296954_SNP [dm6]	G	C	1.824e^-4	0.902	INTRON mbl
3R	26916466	3R_26916466_SNP [dm3] 3R_31090744_SNP [dm6]	C	A	1.827e^-4	0.902	UTR_3_PRIME CG11317
2L	16362492	2L_16362492_SNP [dm3] 2L_16362492_SNP [dm6]	G	A	1.828e^-4	0.902	INTERGENIC
3L	10359686	3L_10359686_SNP [dm3] 3L_10366586_SNP [dm6]	C	A	1.831e^-4	0.902	EXON CR44327
2R	6798066	2R_6798066_SNP [dm3] 2R_10910561_SNP [dm6]	T	G	1.834e^-4	0.902	DOWNSTREAM Obp47a INTERGENIC
3R	16946944	3R_16946944_SNP [dm3] 3R_21121222_SNP [dm6]	G	A	1.834e^-4	0.902	SPLICE_SITE_REGION slmb INTRON slmb
2L	13826067	2L_13826067_SNP [dm3] 2L_13826067_SNP [dm6]	G	A	1.836e^-4	0.902	NON_SYNONYMOUS_CODING tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	15812356	3R_15812356_SNP [dm3] 3R_19986634_SNP [dm6]	T	G	1.837e^-4	0.902	INTRON Hs6st
2L	10908329	2L_10908329_SNP [dm3] 2L_10908329_SNP [dm6]	G	A	1.840e^-4	0.902	SYNONYMOUS_CODING CG7309
3R	18328932	3R_18328932_SNP [dm3] 3R_22503210_SNP [dm6]	T	A	1.844e^-4	0.902	INTRON Octbeta1R
3L	8251575	3L_8251575_DEL [dm3] 3L_8258475_DEL [dm6]	AATAC	A	1.851e^-4	0.902	INTRON Dscam4
2L	10915601	2L_10915601_SNP [dm3] 2L_10915601_SNP [dm6]	C	T	1.860e^-4	0.902	INTERGENIC
2R	6075465	2R_6075465_SNP [dm3] 2R_10187960_SNP [dm6]	C	T	1.861e^-4	0.902	INTRON KCNQ
X	20157137	X_20157137_SNP [dm3] X_20286110_SNP [dm6]	A	T	1.873e^-4	0.902	INTERGENIC
2L	1639872	2L_1639872_SNP [dm3] 2L_1639872_SNP [dm6]	G	A	1.878e^-4	0.902	INTERGENIC
3R	474457	3R_474457_SNP [dm3] 3R_4648735_SNP [dm6]	A	G	1.879e^-4	0.902	UTR_3_PRIME rpk UPSTREAM Karybeta3 & 1 other
X	15548848	X_15548848_SNP [dm3] X_15654815_SNP [dm6]	A	C	1.882e^-4	0.902	INTERGENIC
3R	15466143	3R_15466143_SNP [dm3] 3R_19640421_SNP [dm6]	A	G	1.894e^-4	0.902	INTRON subdued
2R	6788278	2R_6788278_SNP [dm3] 2R_10900773_SNP [dm6]	T	A	1.895e^-4	0.902	INTERGENIC
2L	1318733	2L_1318733_SNP [dm3] 2L_1318733_SNP [dm6]	A	C	1.895e^-4	0.902	INTERGENIC
X	9384253	X_9384253_SNP [dm3] X_9490220_SNP [dm6]	A	C	1.897e^-4	0.902	INTRON mgl
2L	4171014	2L_4171014_SNP [dm3] 2L_4171014_SNP [dm6]	A	T	1.897e^-4	0.902	INTERGENIC
3R	4881188	3R_4881188_SNP [dm3] 3R_9055466_SNP [dm6]	C	A	1.901e^-4	0.902	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	11068970	2L_11068970_SNP [dm3] 2L_11068970_SNP [dm6]	T	C	1.914e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12384937	2L_12384937_SNP [dm3] 2L_12384937_SNP [dm6]	C	T	1.915e^-4	0.902	INTRON bru-2
3R	9386358	3R_9386358_SNP [dm3] 3R_13560636_SNP [dm6]	G	A	1.955e^-4	0.902	INTERGENIC
3L	10358542	3L_10358542_SNP [dm3] 3L_10365442_SNP [dm6]	C	G	1.959e^-4	0.902	DOWNSTREAM mir-276a EXON CR44327	TF binding site mE1_TFBS_zfh1
3R	9451269	3R_9451269_SNP [dm3] 3R_13625547_SNP [dm6]	C	A	1.960e^-4	0.902	INTERGENIC
3L	10377696	3L_10377696_DEL [dm3] 3L_10384596_DEL [dm6]	AA	A	1.961e^-4	0.902	INTERGENIC
3L	2378523	3L_2378523_SNP [dm3] 3L_2378523_SNP [dm6]	T	C	1.964e^-4	0.902	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da
2L	8316168	2L_8316168_SNP [dm3] 2L_8316168_SNP [dm6]	A	C	1.969e^-4	0.902	DOWNSTREAM mtsh INTRON CG7806
3R	15719749	3R_15719749_SNP [dm3] 3R_19894027_SNP [dm6]	G	A	1.973e^-4	0.902	INTRON CG4733	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6206548	2R_6206548_SNP [dm3] 2R_10319043_SNP [dm6]	C	G	1.976e^-4	0.902	DOWNSTREAM CG34222 INTRON Ndg	TF binding site mE1_TFBS_cad
X	19014399	X_19014399_SNP [dm3] X_19120366_SNP [dm6]	A	G	1.977e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14187174	2L_14187174_SNP [dm3] 2L_14187174_SNP [dm6]	G	A	1.979e^-4	0.902	INTRON Dyrk2	TF binding site mE1_TFBS_cad
2L	9465597	2L_9465597_SNP [dm3] 2L_9465597_SNP [dm6]	T	G	1.984e^-4	0.902	INTERGENIC
3L	2174616	3L_2174616_SNP [dm3] 3L_2174616_SNP [dm6]	A	T	1.990e^-4	0.902	UPSTREAM CG15820 INTERGENIC
3R	16330101	3R_16330101_SNP [dm3] 3R_20504379_SNP [dm6]	T	A	2.000e^-4	0.902	UPSTREAM MtnB & 1 other INTERGENIC
X	20611365	X_20611365_INS [dm3] X_20740338_INS [dm6]	C	CC	2.003e^-4	0.902	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	17000818	3R_17000818_SNP [dm3] 3R_21175096_SNP [dm6]	C	G	2.005e^-4	0.902	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12384929	2L_12384929_SNP [dm3] 2L_12384929_SNP [dm6]	C	T	2.009e^-4	0.902	INTRON bru-2
3L	7275845	3L_7275845_SNP [dm3] 3L_7282745_SNP [dm6]	A	C	2.014e^-4	0.902	INTRON unc-13-4A
3L	9109234	3L_9109234_SNP [dm3] 3L_9116134_SNP [dm6]	C	T	2.015e^-4	0.902	INTRON bol
X	22057746	X_22057746_DEL [dm3] X_22655910_DEL [dm6]	CGTCTGTCC	C	2.016e^-4	0.902	INTERGENIC	transposable element FlyBase
3L	10357492	3L_10357492_SNP [dm3] 3L_10364392_SNP [dm6]	T	C	2.016e^-4	0.902	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
2L	15013160	2L_15013160_SNP [dm3] 2L_15013160_SNP [dm6]	G	A	2.017e^-4	0.902	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12314820	3R_12314820_SNP [dm3] 3R_16489098_SNP [dm6]	T	C	2.020e^-4	0.902	SYNONYMOUS_CODING Cad89D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14345441	3R_14345441_SNP [dm3] 3R_18519719_SNP [dm6]	G	A	2.028e^-4	0.902	INTRON fru
3L	8866542	3L_8866542_SNP [dm3] 3L_8873442_SNP [dm6]	T	C	2.034e^-4	0.902	INTRON dally	TF binding site mE1_TFBS_cad
3L	13034928	3L_13034928_SNP [dm3] 3L_13041828_SNP [dm6]	C	T	2.035e^-4	0.902	UTR_5_PRIME RpS4 UPSTREAM snoRNA:Psi28S-3327a DOWNSTREAM SRm160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	10511738	2R_10511738_SNP [dm3] 2R_14624233_SNP [dm6]	A	T	2.041e^-4	0.902	UPSTREAM snoRNA:Or-CD4 DOWNSTREAM snoRNA:Me28S-A992 & 3 others INTRON Uhg5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3072980	2L_3072980_SNP [dm3] 2L_3072980_SNP [dm6]	T	G	2.042e^-4	0.902	UPSTREAM toc INTRON toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10597557	3L_10597557_SNP [dm3] 3L_10604457_SNP [dm6]	G	A	2.044e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18566912	2L_18566912_SNP [dm3] 2L_18566912_SNP [dm6]	A	T	2.046e^-4	0.902	INTRON Pde11
3L	8241894	3L_8241894_SNP [dm3] 3L_8248794_SNP [dm6]	G	T	2.056e^-4	0.902	UTR_5_PRIME Dscam4
3L	10378012	3L_10378012_SNP [dm3] 3L_10384912_SNP [dm6]	A	G	2.061e^-4	0.902	INTERGENIC
X	4539797	X_4539797_SNP [dm3] X_4645764_SNP [dm6]	A	G	2.061e^-4	0.902	UTR_3_PRIME HLH4C UPSTREAM CG3062	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2308317	2L_2308317_SNP [dm3] 2L_2308317_SNP [dm6]	A	C	2.062e^-4	0.902	SYNONYMOUS_CODING CG16995 DOWNSTREAM CG9967
2L	4952533	2L_4952533_SNP [dm3] 2L_4952533_SNP [dm6]	G	A	2.064e^-4	0.902	SYNONYMOUS_CODING Jon25Bii	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10355958	3L_10355958_SNP [dm3] 3L_10362858_SNP [dm6]	T	C	2.068e^-4	0.902	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13881649	2R_13881649_SNP [dm3] 2R_17994144_SNP [dm6]	G	T	2.081e^-4	0.902	INTRON dpr13
3R	15817458	3R_15817458_SNP [dm3] 3R_19991736_SNP [dm6]	A	G	2.087e^-4	0.902	INTRON Hs6st
2R	11993091	2R_11993091_SNP [dm3] 2R_16105586_SNP [dm6]	T	A	2.095e^-4	0.902	INTRON Rho1
3L	5777010	3L_5777010_SNP [dm3] 3L_5783910_SNP [dm6]	C	T	2.102e^-4	0.902	SYNONYMOUS_CODING Cralbp UTR_3_PRIME Pmi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16354713	3L_16354713_SNP [dm3] 3L_16361613_SNP [dm6]	G	A	2.108e^-4	0.902	NON_SYNONYMOUS_CODING CG45057 UPSTREAM Cpr72Ea
2L	3210619	2L_3210619_SNP [dm3] 2L_3210619_SNP [dm6]	A	T	2.114e^-4	0.902	EXON CR45336
2L	10440508	2L_10440508_SNP [dm3] 2L_10440508_SNP [dm6]	T	A	2.122e^-4	0.902	SPLICE_SITE_REGION CG13142 INTRON CG13142
3R	11812360	3R_11812360_SNP [dm3] 3R_15986638_SNP [dm6]	G	A	2.127e^-4	0.902	UTR_5_PRIME srp EXON CR44133	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12614562	2R_12614562_SNP [dm3] 2R_16727057_SNP [dm6]	T	C	2.140e^-4	0.902	INTRON CG30463	TF binding site mE1_TFBS_inv
2L	19852113	2L_19852113_SNP [dm3] 2L_19852113_SNP [dm6]	A	T	2.144e^-4	0.902	INTRON sick
2L	1235419	2L_1235419_SNP [dm3] 2L_1235419_SNP [dm6]	C	G	2.149e^-4	0.902	INTERGENIC
3R	26916453	3R_26916453_SNP [dm3] 3R_31090731_SNP [dm6]	T	A	2.152e^-4	0.902	UTR_3_PRIME CG11317
3R	26916454	3R_26916454_SNP [dm3] 3R_31090732_SNP [dm6]	T	A	2.152e^-4	0.902	UTR_3_PRIME CG11317
3R	26916456	3R_26916456_DEL [dm3] 3R_31090734_DEL [dm6]	TTG	T	2.152e^-4	0.902	UTR_3_PRIME CG11317
3R	26916461	3R_26916461_SNP [dm3] 3R_31090739_SNP [dm6]	A	T	2.152e^-4	0.902	UTR_3_PRIME CG11317
3R	26916463	3R_26916463_SNP [dm3] 3R_31090741_SNP [dm6]	A	G	2.152e^-4	0.902	UTR_3_PRIME CG11317
X	17334745	X_17334745_SNP [dm3] X_17440712_SNP [dm6]	A	C	2.156e^-4	0.902	INTRON CG12994
3R	15468404	3R_15468404_SNP [dm3] 3R_19642682_SNP [dm6]	C	A	2.158e^-4	0.902	UTR_5_PRIME subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12774793	2R_12774793_SNP [dm3] 2R_16887288_SNP [dm6]	G	A	2.163e^-4	0.902	INTRON CG8910
2L	5884371	2L_5884371_SNP [dm3] 2L_5884371_SNP [dm6]	T	C	2.165e^-4	0.902	UTR_3_PRIME Sfp26Ac UPSTREAM CG43185 DOWNSTREAM CG44574
3R	15485189	3R_15485189_SNP [dm3] 3R_19659467_SNP [dm6]	T	G	2.166e^-4	0.902	UPSTREAM ort INTERGENIC
2R	18544259	2R_18544259_SNP [dm3] 2R_22656754_SNP [dm6]	T	C	2.167e^-4	0.902	SYNONYMOUS_CODING CG43325 UTR_5_PRIME CG43326 UPSTREAM CG43326 DOWNSTREAM CR45268	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	2230573	3R_2230573_SNP [dm3] 3R_6404851_SNP [dm6]	T	C	2.175e^-4	0.902	INTRON Dmtn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10424256	3L_10424256_SNP [dm3] 3L_10431156_SNP [dm6]	T	G	2.181e^-4	0.902	SYNONYMOUS_CODING Ir67b
2L	2617539	2L_2617539_SNP [dm3] 2L_2617539_SNP [dm6]	A	G	2.185e^-4	0.902	INTERGENIC
3R	10184289	3R_10184289_SNP [dm3] 3R_14358567_SNP [dm6]	T	A	2.187e^-4	0.902	UTR_3_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12516942	X_12516942_SNP [dm3] X_12622909_SNP [dm6]	G	A	2.188e^-4	0.902	DOWNSTREAM CR44568 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9384889	3R_9384889_INS [dm3] 3R_13559167_INS [dm6]	A	AA	2.193e^-4	0.902	INTERGENIC
3L	8057025	3L_8057025_SNP [dm3] 3L_8063925_SNP [dm6]	G	A	2.202e^-4	0.902	UTR_5_PRIME Ect4
3R	14381754	3R_14381754_SNP [dm3] 3R_18556032_SNP [dm6]	T	C	2.216e^-4	0.902	INTERGENIC
3R	13878520	3R_13878520_SNP [dm3] 3R_18052798_SNP [dm6]	C	T	2.218e^-4	0.902	START_GAINED htl UTR_5_PRIME htl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2L	17578185	2L_17578185_SNP [dm3] 2L_17578185_SNP [dm6]	A	G	2.219e^-4	0.902	INTERGENIC
X	8180600	X_8180600_SNP [dm3] X_8286567_SNP [dm6]	C	G	2.223e^-4	0.902	INTRON nAChRalpha3
3L	2465997	3L_2465997_SNP [dm3] 3L_2465997_SNP [dm6]	A	G	2.229e^-4	0.902	SYNONYMOUS_CODING CG45186 UTR_3_PRIME CG45186 UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl
X	10405684	X_10405684_SNP [dm3] X_10511651_SNP [dm6]	C	G	2.230e^-4	0.902	INTRON spri
3L	7011923	3L_7011923_SNP [dm3] 3L_7018823_SNP [dm6]	C	T	2.231e^-4	0.902	INTRON Mp
3R	11903603	3R_11903603_DEL [dm3] 3R_16077881_DEL [dm6]	CTTTAACCCGAAATGGAGCA...	C	2.250e^-4	0.905	INTRON Mhcl
2L	18908137	2L_18908137_SNP [dm3] 2L_18908137_SNP [dm6]	C	T	2.252e^-4	0.905	INTERGENIC
2R	10423379	2R_10423379_SNP [dm3] 2R_14535874_SNP [dm6]	C	A	2.253e^-4	0.905	INTRON ttv
2L	19215970	2L_19215970_SNP [dm3] 2L_19215970_SNP [dm6]	G	C	2.267e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16954214	2R_16954214_SNP [dm3] 2R_21066709_SNP [dm6]	T	G	2.272e^-4	0.905	INTRON Cht4	TF binding site mE1_TFBS_cad
3R	26942376	3R_26942376_SNP [dm3] 3R_31116654_SNP [dm6]	A	G	2.272e^-4	0.905	INTERGENIC
2R	6850024	2R_6850024_SNP [dm3] 2R_10962519_SNP [dm6]	A	T	2.273e^-4	0.905	INTERGENIC
2L	3890873	2L_3890873_SNP [dm3] 2L_3890873_SNP [dm6]	T	C	2.281e^-4	0.906	UPSTREAM capu INTRON capu
3R	22131040	3R_22131040_SNP [dm3] 3R_26305318_SNP [dm6]	A	C	2.286e^-4	0.906	INTERGENIC
3R	16947067	3R_16947067_DEL [dm3] 3R_21121345_DEL [dm6]	TATAAATA	GCGC	2.293e^-4	0.906	INTRON slmb
3R	15485063	3R_15485063_SNP [dm3] 3R_19659341_SNP [dm6]	A	G	2.300e^-4	0.906	UPSTREAM ort INTERGENIC
2R	16027439	2R_16027439_SNP [dm3] 2R_20139934_SNP [dm6]	A	G	2.300e^-4	0.906	INTERGENIC
3L	8866655	3L_8866655_SNP [dm3] 3L_8873555_SNP [dm6]	C	A	2.308e^-4	0.907	INTRON dally	TF binding site mE1_TFBS_cad
X	18888297	X_18888297_SNP [dm3] X_18994264_SNP [dm6]	A	G	2.319e^-4	0.91	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
3R	14458386	3R_14458386_SNP [dm3] 3R_18632664_SNP [dm6]	T	C	2.333e^-4	0.912	INTRON qin & 1 other
2L	2308337	2L_2308337_SNP [dm3] 2L_2308337_SNP [dm6]	A	C	2.355e^-4	0.912	SYNONYMOUS_CODING CG16995 DOWNSTREAM CG9967
2R	3660502	2R_3660502_SNP [dm3] 2R_7772997_SNP [dm6]	A	G	2.357e^-4	0.912	INTRON CG30497 & 1 other	TF binding site mE1_TFBS_inv
2L	1235435	2L_1235435_SNP [dm3] 2L_1235435_SNP [dm6]	C	G	2.366e^-4	0.912	INTERGENIC
3L	13511510	3L_13511510_SNP [dm3] 3L_13518410_SNP [dm6]	T	C	2.369e^-4	0.912	SYNONYMOUS_CODING CG10710	TF binding site mE1_TFBS_cad
3R	9386452	3R_9386452_SNP [dm3] 3R_13560730_SNP [dm6]	A	C	2.376e^-4	0.912	INTERGENIC
2R	17370907	2R_17370907_SNP [dm3] 2R_21483402_SNP [dm6]	A	G	2.382e^-4	0.912	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18614154	2R_18614154_SNP [dm3] 2R_22726649_SNP [dm6]	A	C	2.384e^-4	0.912	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25505315	3R_25505315_SNP [dm3] 3R_29679593_SNP [dm6]	C	G	2.384e^-4	0.912	SYNONYMOUS_CODING Cap-D2 DOWNSTREAM CG7582	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12103840	3L_12103840_DEL [dm3] 3L_12110740_DEL [dm6]	TA	T	2.387e^-4	0.912	INTERGENIC
2R	12013462	2R_12013462_SNP [dm3] 2R_16125957_SNP [dm6]	T	A	2.389e^-4	0.912	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	21830122	3R_21830122_DEL [dm3] 3R_26004400_DEL [dm6]	CCCAGCCCCTATC...	C	2.390e^-4	0.912	DOWNSTREAM E_spl_mbeta-HLH EXON CR45038
3R	16647723	3R_16647723_SNP [dm3] 3R_20822001_SNP [dm6]	G	T	2.393e^-4	0.912	UPSTREAM RpS20 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	15480100	3R_15480100_SNP [dm3] 3R_19654378_SNP [dm6]	G	A	2.400e^-4	0.912	SYNONYMOUS_CODING CG6184	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16657630	2L_16657630_SNP [dm3] 2L_16657630_SNP [dm6]	A	C	2.403e^-4	0.912	SYNONYMOUS_CODING CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17695123	3R_17695123_SNP [dm3] 3R_21869401_SNP [dm6]	C	T	2.405e^-4	0.912	SYNONYMOUS_CODING CG31174 DOWNSTREAM Cby	TF binding site mE1_TFBS_HSA
2R	15256550	2R_15256550_SNP [dm3] 2R_19369045_SNP [dm6]	C	A	2.406e^-4	0.912	SYNONYMOUS_CODING CG9416
3L	2503779	3L_2503779_SNP [dm3] 3L_2503779_SNP [dm6]	G	C	2.414e^-4	0.913	UPSTREAM CR45425 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10446150	2R_10446150_SNP [dm3] 2R_14558645_SNP [dm6]	T	A	2.423e^-4	0.914	INTRON ttv
3L	17148410	3L_17148410_SNP [dm3] 3L_17155310_SNP [dm6]	C	T	2.433e^-4	0.914	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	6929956	2R_6929956_SNP [dm3] 2R_11042451_SNP [dm6]	T	C	2.434e^-4	0.914	INTRON luna	TF binding site mE1_TFBS_cad
2L	3471015	2L_3471015_SNP [dm3] 2L_3471015_SNP [dm6]	G	A	2.441e^-4	0.914	NON_SYNONYMOUS_CODING CG31776
2L	5496814	2L_5496814_SNP [dm3] 2L_5496814_SNP [dm6]	G	A	2.442e^-4	0.914	INTERGENIC
2L	16547570	2L_16547570_SNP [dm3] 2L_16547570_SNP [dm6]	C	T	2.447e^-4	0.914	INTRON CG42389	TF binding site BDTNP1_TFBS_slp1
2R	14228241	2R_14228241_SNP [dm3] 2R_18340736_SNP [dm6]	A	G	2.457e^-4	0.916	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9789997	3L_9789997_SNP [dm3] 3L_9796897_SNP [dm6]	G	C	2.474e^-4	0.92	INTRON Zasp67
3R	14458024	3R_14458024_SNP [dm3] 3R_18632302_SNP [dm6]	C	A	2.484e^-4	0.92	INTRON qin & 1 other
3R	9377279	3R_9377279_SNP [dm3] 3R_13551557_SNP [dm6]	T	G	2.500e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	13183933	3L_13183933_SNP [dm3] 3L_13190833_SNP [dm6]	A	G	2.506e^-4	0.92	INTERGENIC
3L	10145232	3L_10145232_SNP [dm3] 3L_10152132_SNP [dm6]	C	T	2.511e^-4	0.92	UPSTREAM snoRNA:MeU2-A31 INTRON dpr10 & 1 other
3L	13366747	3L_13366747_SNP [dm3] 3L_13373647_SNP [dm6]	T	C	2.513e^-4	0.92	INTERGENIC
2R	16062788	2R_16062788_SNP [dm3] 2R_20175283_SNP [dm6]	T	A	2.517e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19737942	X_19737942_SNP [dm3] X_19843909_SNP [dm6]	A	G	2.521e^-4	0.92	INTRON pico	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	810190	3R_810190_INS [dm3] 3R_4984468_INS [dm6]	T	TG	2.533e^-4	0.92	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	7001957	2R_7001957_DEL [dm3] 2R_11114452_DEL [dm6]	TGTGTTAGACAGAT...	T	2.534e^-4	0.92	INTRON luna
3L	4493348	3L_4493348_SNP [dm3] 3L_4493348_SNP [dm6]	G	T	2.556e^-4	0.92	DOWNSTREAM CR44709 INTERGENIC
3R	15505847	3R_15505847_SNP [dm3] 3R_19680125_SNP [dm6]	T	C	2.557e^-4	0.92	INTRON Naam
3R	13392874	3R_13392874_SNP [dm3] 3R_17567152_SNP [dm6]	T	C	2.557e^-4	0.92	SYNONYMOUS_CODING Hmx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	19600120	2R_19600120_SNP [dm3] 2R_23712597_SNP [dm6]	T	C	2.559e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23130274	3R_23130274_SNP [dm3] 3R_27304552_SNP [dm6]	T	G	2.561e^-4	0.92	INTRON CG3339
3L	12047507	3L_12047507_SNP [dm3] 3L_12054407_SNP [dm6]	A	T	2.569e^-4	0.92	INTRON rols
3R	9412533	3R_9412533_INS [dm3] 3R_13586811_INS [dm6]	T	TCTGA	2.590e^-4	0.92	INTERGENIC
X	2682430	X_2682430_INS [dm3] X_2788397_INS [dm6]	A	ATA	2.598e^-4	0.92	INTRON kirre & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6444653	2R_6444653_SNP [dm3] 2R_10557148_SNP [dm6]	T	C	2.603e^-4	0.92	UPSTREAM psq INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	17445222	X_17445222_SNP [dm3] X_17551189_SNP [dm6]	A	C	2.607e^-4	0.92	INTRON CG43658
3L	10145235	3L_10145235_SNP [dm3] 3L_10152135_SNP [dm6]	T	C	2.608e^-4	0.92	UPSTREAM snoRNA:MeU2-A31 INTRON dpr10 & 1 other
2R	14698626	2R_14698626_SNP [dm3] 2R_18811121_SNP [dm6]	A	G	2.612e^-4	0.92	INTRON CG15096
3R	12462107	3R_12462107_SNP [dm3] 3R_16636385_SNP [dm6]	C	T	2.642e^-4	0.92	INTRON Fas1
3R	9440448	3R_9440448_SNP [dm3] 3R_13614726_SNP [dm6]	A	G	2.644e^-4	0.92	INTERGENIC
X	6834846	X_6834846_SNP [dm3] X_6940813_SNP [dm6]	C	G	2.648e^-4	0.92	INTRON CG14431
2R	17468864	2R_17468864_SNP [dm3] 2R_21581359_SNP [dm6]	G	T	2.663e^-4	0.92	INTERGENIC
3R	17628598	3R_17628598_SNP [dm3] 3R_21802876_SNP [dm6]	T	A	2.672e^-4	0.92	INTRON CASK	TF binding site BDTNP1_TFBS_twi
3R	15468411	3R_15468411_SNP [dm3] 3R_19642689_SNP [dm6]	C	A	2.680e^-4	0.92	UTR_5_PRIME subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2465085	3L_2465085_SNP [dm3] 3L_2465085_SNP [dm6]	G	A	2.682e^-4	0.92	DOWNSTREAM CG45186 INTRON CG45186
3R	11980368	3R_11980368_SNP [dm3] 3R_16154646_SNP [dm6]	C	G	2.687e^-4	0.92	UPSTREAM CG6006 INTERGENIC
2L	3932127	2L_3932127_DEL [dm3] 2L_3932127_DEL [dm6]	TTCC	AA	2.698e^-4	0.92	INTRON fred
2R	16978096	2R_16978096_SNP [dm3] 2R_21090591_SNP [dm6]	C	T	2.699e^-4	0.92	SYNONYMOUS_CODING Rbpn-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12971509	3L_12971509_SNP [dm3] 3L_12978409_SNP [dm6]	A	T	2.699e^-4	0.92	INTERGENIC
2R	14156655	2R_14156655_SNP [dm3] 2R_18269150_SNP [dm6]	G	T	2.703e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3932119	2L_3932119_SNP [dm3] 2L_3932119_SNP [dm6]	C	G	2.704e^-4	0.92	INTRON fred
2R	18544572	2R_18544572_SNP [dm3] 2R_22657067_SNP [dm6]	C	T	2.706e^-4	0.92	UTR_5_PRIME CG43325 UPSTREAM CG43326 & 4 others DOWNSTREAM CR45268	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16281341	2R_16281341_SNP [dm3] 2R_20393836_SNP [dm6]	A	T	2.708e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16534434	3R_16534434_SNP [dm3] 3R_20708712_SNP [dm6]	T	C	2.714e^-4	0.92	INTRON Oamb
2R	17370395	2R_17370395_SNP [dm3] 2R_21482890_SNP [dm6]	G	C	2.728e^-4	0.92	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad
2R	16044237	2R_16044237_SNP [dm3] 2R_20156732_SNP [dm6]	G	T	2.741e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9377351	3R_9377351_SNP [dm3] 3R_13551629_SNP [dm6]	T	G	2.742e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3657797	2L_3657797_SNP [dm3] 2L_3657797_SNP [dm6]	A	G	2.745e^-4	0.92	UPSTREAM for INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15204930	2R_15204930_SNP [dm3] 2R_19317425_SNP [dm6]	C	T	2.754e^-4	0.92	INTRON Rgk1
3R	9386354	3R_9386354_SNP [dm3] 3R_13560632_SNP [dm6]	T	A	2.754e^-4	0.92	INTERGENIC
2R	12358253	2R_12358253_SNP [dm3] 2R_16470748_SNP [dm6]	A	T	2.762e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1194748	3L_1194748_SNP [dm3] 3L_1194748_SNP [dm6]	T	A	2.778e^-4	0.92	UTR_3_PRIME LysX
3L	16170959	3L_16170959_SNP [dm3] 3L_16177859_SNP [dm6]	C	T	2.779e^-4	0.92	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	21383927	2L_21383927_SNP [dm3] 2L_21383927_SNP [dm6]	A	C	2.784e^-4	0.92	INTRON nrv3	transposable element FlyBase
3L	5760618	3L_5760618_SNP [dm3] 3L_5767518_SNP [dm6]	G	A	2.786e^-4	0.92	NON_SYNONYMOUS_CODING Ppat-Dpck DOWNSTREAM Txl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	9435020	2R_9435020_SNP [dm3] 2R_13547515_SNP [dm6]	C	G	2.786e^-4	0.92	SYNONYMOUS_CODING CG6145 UPSTREAM CG6145 DOWNSTREAM CG33156	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19361617	X_19361617_SNP [dm3] X_19467584_SNP [dm6]	A	G	2.789e^-4	0.92	INTRON kek5
3R	15466122	3R_15466122_SNP [dm3] 3R_19640400_SNP [dm6]	T	A	2.792e^-4	0.92	INTRON subdued
3R	7405080	3R_7405080_SNP [dm3] 3R_11579358_SNP [dm6]	A	T	2.795e^-4	0.92	NON_SYNONYMOUS_CODING CG5342 UPSTREAM CG6790
2L	14005434	2L_14005434_SNP [dm3] 2L_14005434_SNP [dm6]	A	G	2.799e^-4	0.92	INTERGENIC
2R	5781437	2R_5781437_SNP [dm3] 2R_9893932_SNP [dm6]	A	C	2.808e^-4	0.92	INTRON CG30007
3L	8161891	3L_8161891_SNP [dm3] 3L_8168791_SNP [dm6]	A	T	2.809e^-4	0.92	INTERGENIC
2R	15365823	2R_15365823_INS [dm3] 2R_19478318_INS [dm6]	A	AA	2.809e^-4	0.92	INTRON par-1
X	12654857	X_12654857_DEL [dm3] X_12760824_DEL [dm6]	CTTATGTACATAC...	C	2.814e^-4	0.92	UTR_3_PRIME CG12717 UPSTREAM ade5 DOWNSTREAM CG12717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3518668	2L_3518668_SNP [dm3] 2L_3518668_SNP [dm6]	G	T	2.820e^-4	0.92	SYNONYMOUS_CODING CG3213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16361181	2R_16361181_SNP [dm3] 2R_20473676_SNP [dm6]	A	T	2.831e^-4	0.92	INTRON CG12484
2R	18261102	2R_18261102_SNP [dm3] 2R_22373597_SNP [dm6]	A	T	2.831e^-4	0.92	UPSTREAM Liprin-gamma DOWNSTREAM CR44759 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14005384	2L_14005384_SNP [dm3] 2L_14005384_SNP [dm6]	C	G	2.831e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18056901	3L_18056901_SNP [dm3] 3L_18063801_SNP [dm6]	A	T	2.835e^-4	0.92	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13184445	2R_13184445_SNP [dm3] 2R_17296940_SNP [dm6]	T	G	2.836e^-4	0.92	INTRON mbl
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	2.837e^-4	0.92	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8325468	2L_8325468_SNP [dm3] 2L_8325468_SNP [dm6]	C	A	2.840e^-4	0.92	UPSTREAM CG7781 INTERGENIC
3R	15466336	3R_15466336_SNP [dm3] 3R_19640614_SNP [dm6]	A	C	2.842e^-4	0.92	INTRON subdued	TF binding site mE1_TFBS_Trl
2R	13783849	2R_13783849_SNP [dm3] 2R_17896344_SNP [dm6]	C	T	2.852e^-4	0.92	DOWNSTREAM CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15467245	3R_15467245_SNP [dm3] 3R_19641523_SNP [dm6]	G	T	2.861e^-4	0.92	UPSTREAM subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5803398	3R_5803398_SNP [dm3] 3R_9977676_SNP [dm6]	G	A	2.865e^-4	0.92	INTRON Glut4EF
3R	5723276	3R_5723276_SNP [dm3] 3R_9897554_SNP [dm6]	C	T	2.868e^-4	0.92	INTRON Glut4EF
X	2967770	X_2967770_SNP [dm3] X_3073737_SNP [dm6]	C	A	2.872e^-4	0.92	INTRON kirre
2L	8069520	2L_8069520_SNP [dm3] 2L_8069520_SNP [dm6]	A	G	2.873e^-4	0.92	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17935893	3L_17935893_SNP [dm3] 3L_17942793_SNP [dm6]	C	T	2.874e^-4	0.92	INTRON CG43174
3L	16628515	3L_16628515_SNP [dm3] 3L_16635415_SNP [dm6]	A	T	2.887e^-4	0.92	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16508087	3R_16508087_SNP [dm3] 3R_20682365_SNP [dm6]	A	C	2.892e^-4	0.92	INTERGENIC
2R	16044243	2R_16044243_SNP [dm3] 2R_20156738_SNP [dm6]	T	C	2.892e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14381889	3R_14381889_SNP [dm3] 3R_18556167_SNP [dm6]	C	A	2.897e^-4	0.92	INTERGENIC
X	3142599	X_3142599_SNP [dm3] X_3248566_SNP [dm6]	T	C	2.898e^-4	0.92	UPSTREAM Sgs4 DOWNSTREAM Pig1 INTRON dnc
2R	12778320	2R_12778320_SNP [dm3] 2R_16890815_SNP [dm6]	C	T	2.902e^-4	0.92	INTRON CG8910	TF binding site BDTNP1_TFBS_dl
2R	15074805	2R_15074805_SNP [dm3] 2R_19187300_SNP [dm6]	G	C	2.906e^-4	0.92	INTRON hppy
2R	6929974	2R_6929974_SNP [dm3] 2R_11042469_SNP [dm6]	T	C	2.906e^-4	0.92	INTRON luna	TF binding site mE1_TFBS_cad
2R	6929977	2R_6929977_SNP [dm3] 2R_11042472_SNP [dm6]	A	C	2.906e^-4	0.92	INTRON luna	TF binding site mE1_TFBS_cad
3R	9377532	3R_9377532_SNP [dm3] 3R_13551810_SNP [dm6]	C	A	2.908e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12664311	3R_12664311_SNP [dm3] 3R_16838589_SNP [dm6]	C	A	2.909e^-4	0.92	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24058336	3R_24058336_SNP [dm3] 3R_28232614_SNP [dm6]	G	A	2.911e^-4	0.92	INTRON CG34354
2R	8948921	2R_8948921_SNP [dm3] 2R_13061416_SNP [dm6]	C	A	2.913e^-4	0.92	INTRON Drl-2
3L	8889871	3L_8889871_SNP [dm3] 3L_8896771_SNP [dm6]	C	T	2.916e^-4	0.92	INTRON TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	12778303	2R_12778303_SNP [dm3] 2R_16890798_SNP [dm6]	A	G	2.920e^-4	0.92	INTRON CG8910	TF binding site BDTNP1_TFBS_dl
3R	4040573	3R_4040573_SNP [dm3] 3R_8214851_SNP [dm6]	A	T	2.923e^-4	0.92	INTERGENIC
2R	8912316	2R_8912316_DEL [dm3] 2R_13024811_DEL [dm6]	TT	T	2.926e^-4	0.92	INTERGENIC
X	18908813	X_18908813_SNP [dm3] X_19014780_SNP [dm6]	A	C	2.927e^-4	0.92	INTRON CG43759	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10490045	3L_10490045_SNP [dm3] 3L_10496945_SNP [dm6]	T	C	2.929e^-4	0.92	INTRON A2bp1
3R	23201304	3R_23201304_SNP [dm3] 3R_27375582_SNP [dm6]	T	C	2.952e^-4	0.92	UTR_3_PRIME side
2L	3932141	2L_3932141_SNP [dm3] 2L_3932141_SNP [dm6]	T	A	2.959e^-4	0.92	INTRON fred
3R	15808227	3R_15808227_SNP [dm3] 3R_19982505_SNP [dm6]	C	T	2.968e^-4	0.92	INTRON Hs6st
2L	13684842	2L_13684842_INS [dm3] 2L_13684842_INS [dm6]	T	TAT	2.969e^-4	0.92	INTRON CG31814
3L	3922633	3L_3922633_SNP [dm3] 3L_3922633_SNP [dm6]	C	T	2.969e^-4	0.92	INTRON Eip63F-1
3R	15510107	3R_15510107_SNP [dm3] 3R_19684385_SNP [dm6]	G	A	2.973e^-4	0.92	INTRON Naam
2L	16544073	2L_16544073_DEL [dm3] 2L_16544073_DEL [dm6]	ATCTGG	A	2.976e^-4	0.92	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3056414	2L_3056414_SNP [dm3] 2L_3056414_SNP [dm6]	G	A	2.979e^-4	0.92	UPSTREAM CG3523 DOWNSTREAM v_2_k05816 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22704180	3R_22704180_SNP [dm3] 3R_26878458_SNP [dm6]	A	C	2.979e^-4	0.92	INTRON CG5500 & 1 other
3R	2299036	3R_2299036_SNP [dm3] 3R_6473314_SNP [dm6]	G	A	2.984e^-4	0.92	INTERGENIC
3L	6711407	3L_6711407_SNP [dm3] 3L_6718307_SNP [dm6]	G	A	2.993e^-4	0.92	INTRON ple
X	19737283	X_19737283_SNP [dm3] X_19843250_SNP [dm6]	T	C	2.997e^-4	0.92	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11217962	X_11217962_SNP [dm3] X_11323929_SNP [dm6]	C	T	2.998e^-4	0.92	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	14140323	3L_14140323_SNP [dm3] 3L_14147223_SNP [dm6]	T	C	3.001e^-4	0.92	INTERGENIC	regulatory region REDfly_CRMs
3R	12452876	3R_12452876_SNP [dm3] 3R_16627154_SNP [dm6]	A	G	3.014e^-4	0.92	INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16281943	2R_16281943_SNP [dm3] 2R_20394438_SNP [dm6]	G	T	3.016e^-4	0.92	INTERGENIC
2L	3932143	2L_3932143_DEL [dm3] 2L_3932143_DEL [dm6]	TAT	GG	3.018e^-4	0.92	INTRON fred
2L	3471080	2L_3471080_SNP [dm3] 2L_3471080_SNP [dm6]	A	T	3.032e^-4	0.92	SPLICE_SITE_REGION CG31776 INTRON CG31776
2R	7587130	2R_7587130_SNP [dm3] 2R_11699625_SNP [dm6]	C	A	3.034e^-4	0.92	EXON Ir48a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8316129	2L_8316129_SNP [dm3] 2L_8316129_SNP [dm6]	G	C	3.046e^-4	0.92	SPLICE_SITE_REGION CG7806 DOWNSTREAM mtsh INTRON CG7806
2L	12282369	2L_12282369_SNP [dm3] 2L_12282369_SNP [dm6]	A	G	3.047e^-4	0.92	INTRON aret
3R	7263319	3R_7263319_SNP [dm3] 3R_11437597_SNP [dm6]	A	G	3.054e^-4	0.92	UTR_3_PRIME sals UPSTREAM CG17230 DOWNSTREAM CG5281	TF binding site BDTNP1_TFBS_Med
2R	15260899	2R_15260899_SNP [dm3] 2R_19373394_SNP [dm6]	C	T	3.058e^-4	0.92	UPSTREAM CG9416 INTRON CG9416	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18543853	2R_18543853_SNP [dm3] 2R_22656348_SNP [dm6]	T	A	3.058e^-4	0.92	UTR_5_PRIME CG43326 UTR_3_PRIME CG43325 UPSTREAM CG30196 & 1 other EXON CR45268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14040684	X_14040684_SNP [dm3] X_14146651_SNP [dm6]	A	T	3.060e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12971957	3L_12971957_SNP [dm3] 3L_12978857_SNP [dm6]	A	T	3.071e^-4	0.92	INTERGENIC
3L	5931521	3L_5931521_SNP [dm3] 3L_5938421_SNP [dm6]	C	T	3.079e^-4	0.92	INTRON CG33993
3R	10688416	3R_10688416_SNP [dm3] 3R_14862694_SNP [dm6]	C	A	3.083e^-4	0.92	INTRON btsz
3L	10377546	3L_10377546_SNP [dm3] 3L_10384446_SNP [dm6]	A	C	3.087e^-4	0.92	INTERGENIC
3L	18304745	3L_18304745_SNP [dm3] 3L_18311645_SNP [dm6]	T	A	3.088e^-4	0.92	INTERGENIC
2R	12358256	2R_12358256_SNP [dm3] 2R_16470751_SNP [dm6]	C	T	3.093e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	15466134	3R_15466134_SNP [dm3] 3R_19640412_SNP [dm6]	G	A	3.094e^-4	0.92	INTRON subdued
3R	23130271	3R_23130271_SNP [dm3] 3R_27304549_SNP [dm6]	T	A	3.096e^-4	0.92	INTRON CG3339
3L	3920676	3L_3920676_SNP [dm3] 3L_3920676_SNP [dm6]	G	A	3.099e^-4	0.92	INTRON Eip63F-1
2L	3471146	2L_3471146_SNP [dm3] 2L_3471146_SNP [dm6]	T	C	3.102e^-4	0.92	SYNONYMOUS_CODING CG31776
3L	5423850	3L_5423850_SNP [dm3] 3L_5430750_SNP [dm6]	G	A	3.116e^-4	0.92	INTRON CG34391
2L	7002288	2L_7002288_SNP [dm3] 2L_7002288_SNP [dm6]	G	A	3.126e^-4	0.92	INTRON uif
3L	11938593	3L_11938593_SNP [dm3] 3L_11945493_SNP [dm6]	G	A	3.142e^-4	0.92	UPSTREAM CG5883 DOWNSTREAM mir-285 INTERGENIC
3L	7247554	3L_7247554_SNP [dm3] 3L_7254454_SNP [dm6]	A	G	3.146e^-4	0.92	INTRON CG14830
2R	14362710	2R_14362710_SNP [dm3] 2R_18475205_SNP [dm6]	C	A	3.153e^-4	0.92	INTRON CG30116
3R	15485053	3R_15485053_SNP [dm3] 3R_19659331_SNP [dm6]	A	G	3.155e^-4	0.92	UPSTREAM ort INTERGENIC
2R	13551510	2R_13551510_SNP [dm3] 2R_17664005_SNP [dm6]	C	T	3.156e^-4	0.92	INTRON CCHa1-R
2R	11993090	2R_11993090_SNP [dm3] 2R_16105585_SNP [dm6]	T	A	3.179e^-4	0.92	INTRON Rho1
3L	10377618	3L_10377618_SNP [dm3] 3L_10384518_SNP [dm6]	A	C	3.190e^-4	0.92	INTERGENIC
2L	17578204	2L_17578204_SNP [dm3] 2L_17578204_SNP [dm6]	A	G	3.193e^-4	0.92	INTERGENIC
3R	15467612	3R_15467612_SNP [dm3] 3R_19641890_SNP [dm6]	A	G	3.195e^-4	0.92	UPSTREAM subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl
X	6745239	X_6745239_SNP [dm3] X_6851206_SNP [dm6]	G	A	3.199e^-4	0.92	UTR_3_PRIME CG4558 DOWNSTREAM CG14434 INTRON CG4558
3R	810198	3R_810198_SNP [dm3] 3R_4984476_SNP [dm6]	C	A	3.201e^-4	0.92	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	4099211	X_4099211_SNP [dm3] X_4205178_SNP [dm6]	A	G	3.203e^-4	0.92	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
2L	16380307	2L_16380307_SNP [dm3] 2L_16380307_SNP [dm6]	G	A	3.204e^-4	0.92	INTERGENIC
3L	5489810	3L_5489810_SNP [dm3] 3L_5496710_SNP [dm6]	G	A	3.208e^-4	0.92	DOWNSTREAM blanks INTERGENIC
X	6745294	X_6745294_SNP [dm3] X_6851261_SNP [dm6]	C	T	3.219e^-4	0.92	UTR_3_PRIME CG4558 DOWNSTREAM CG14434 INTRON CG4558
X	22058834	X_22058834_SNP [dm3] X_22656998_SNP [dm6]	C	T	3.219e^-4	0.92	UPSTREAM CR44997 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9367230	3L_9367230_SNP [dm3] 3L_9374130_SNP [dm6]	A	G	3.233e^-4	0.92	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	5934475	2L_5934475_SNP [dm3] 2L_5934475_SNP [dm6]	C	T	3.239e^-4	0.92	INTRON dsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	13873045	X_13873045_SNP [dm3] X_13979012_SNP [dm6]	T	C	3.242e^-4	0.92	INTRON mamo
X	3006621	X_3006621_SNP [dm3] X_3112588_SNP [dm6]	T	A	3.248e^-4	0.92	INTRON kirre
2R	6929932	2R_6929932_DEL [dm3] 2R_11042427_DEL [dm6]	TT	T	3.253e^-4	0.92	INTRON luna	TF binding site mE1_TFBS_cad
2R	14081107	2R_14081107_DEL [dm3] 2R_18193602_DEL [dm6]	AT	G	3.267e^-4	0.92	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10378455	3L_10378455_SNP [dm3] 3L_10385355_SNP [dm6]	A	T	3.267e^-4	0.92	INTERGENIC
2L	9351875	2L_9351875_SNP [dm3] 2L_9351875_SNP [dm6]	C	A	3.268e^-4	0.92	DOWNSTREAM CG13110 INTERGENIC
3L	2174549	3L_2174549_SNP [dm3] 3L_2174549_SNP [dm6]	A	T	3.275e^-4	0.92	UPSTREAM CG15820 INTERGENIC
3R	20905783	3R_20905783_DEL [dm3] 3R_25080061_DEL [dm6]	TCC	T	3.275e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6845721	2R_6845721_SNP [dm3] 2R_10958216_SNP [dm6]	A	T	3.281e^-4	0.92	INTERGENIC
3L	5959115	3L_5959115_SNP [dm3] 3L_5966015_SNP [dm6]	C	A	3.293e^-4	0.92	INTERGENIC
3R	15480055	3R_15480055_SNP [dm3] 3R_19654333_SNP [dm6]	A	G	3.295e^-4	0.92	SYNONYMOUS_CODING CG6184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15468499	3R_15468499_SNP [dm3] 3R_19642777_SNP [dm6]	G	C	3.295e^-4	0.92	UPSTREAM subdued DOWNSTREAM Vha13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6429819	2R_6429819_SNP [dm3] 2R_10542314_SNP [dm6]	A	T	3.299e^-4	0.92	UPSTREAM lola DOWNSTREAM CR45135 INTRON lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
X	6453518	X_6453518_SNP [dm3] X_6559485_SNP [dm6]	T	C	3.313e^-4	0.92	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
2R	11221523	2R_11221523_SNP [dm3] 2R_15334018_SNP [dm6]	C	T	3.314e^-4	0.92	INTRON Hr51	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12626338	3L_12626338_SNP [dm3] 3L_12633238_SNP [dm6]	T	G	3.318e^-4	0.92	INTRON CR32111	TF binding site mE1_TFBS_cad
2R	15659499	2R_15659499_SNP [dm3] 2R_19771994_SNP [dm6]	G	A	3.318e^-4	0.92	UPSTREAM Or56a INTERGENIC
X	20048362	X_20048362_SNP [dm3] X_20154329_SNP [dm6]	G	A	3.320e^-4	0.92	NON_SYNONYMOUS_CODING CG9572	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	11217982	X_11217982_SNP [dm3] X_11323949_SNP [dm6]	C	T	3.321e^-4	0.92	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	9305866	2L_9305866_SNP [dm3] 2L_9305866_SNP [dm6]	C	G	3.339e^-4	0.92	UPSTREAM CR42844 INTERGENIC
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	3.343e^-4	0.92	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
3L	10357987	3L_10357987_SNP [dm3] 3L_10364887_SNP [dm6]	A	T	3.347e^-4	0.92	UPSTREAM mir-276a EXON CR44327
X	16628355	X_16628355_SNP [dm3] X_16734322_SNP [dm6]	T	A	3.348e^-4	0.92	UPSTREAM TwdlY INTRON CG9634
3L	23958432	3L_23958432_SNP [dm3] 3L_23965332_SNP [dm6]	A	G	3.351e^-4	0.92	INTRON CG40470
3L	11934001	3L_11934001_SNP [dm3] 3L_11940901_SNP [dm6]	C	A	3.355e^-4	0.92	INTERGENIC
3L	10358972	3L_10358972_SNP [dm3] 3L_10365872_SNP [dm6]	T	C	3.368e^-4	0.92	DOWNSTREAM mir-276a EXON CR44327	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3R	13375947	3R_13375947_SNP [dm3] 3R_17550225_SNP [dm6]	A	C	3.374e^-4	0.92	INTERGENIC
3R	14381751	3R_14381751_SNP [dm3] 3R_18556029_SNP [dm6]	T	A	3.381e^-4	0.92	INTERGENIC
3R	16990123	3R_16990123_SNP [dm3] 3R_21164401_SNP [dm6]	G	T	3.388e^-4	0.92	SYNONYMOUS_CODING CG5810 DOWNSTREAM Snmp1 INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	3.389e^-4	0.92	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
3L	13049105	3L_13049105_SNP [dm3] 3L_13056005_SNP [dm6]	A	G	3.403e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	16362283	2L_16362283_SNP [dm3] 2L_16362283_SNP [dm6]	T	A	3.405e^-4	0.92	INTERGENIC
3R	19659897	3R_19659897_SNP [dm3] 3R_23834175_SNP [dm6]	A	C	3.406e^-4	0.92	INTRON CG34355
3R	8353044	3R_8353044_SNP [dm3] 3R_12527322_SNP [dm6]	C	T	3.406e^-4	0.92	INTRON Octbeta3R & 1 other
X	21027562	X_21027562_SNP [dm3] X_21156535_SNP [dm6]	C	G	3.414e^-4	0.92	UPSTREAM CR45499 EXON CR32511
3L	1487360	3L_1487360_SNP [dm3] 3L_1487360_SNP [dm6]	A	G	3.415e^-4	0.92	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	1487399	3L_1487399_SNP [dm3] 3L_1487399_SNP [dm6]	T	A	3.415e^-4	0.92	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19852125	2L_19852125_SNP [dm3] 2L_19852125_SNP [dm6]	A	T	3.420e^-4	0.92	INTRON sick
X	11218298	X_11218298_SNP [dm3] X_11324265_SNP [dm6]	T	C	3.433e^-4	0.92	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10357885	3L_10357885_SNP [dm3] 3L_10364785_SNP [dm6]	C	T	3.433e^-4	0.92	UPSTREAM mir-276a EXON CR44327
2L	3080883	2L_3080883_SNP [dm3] 2L_3080883_SNP [dm6]	T	A	3.443e^-4	0.92	NON_SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1487346	3L_1487346_SNP [dm3] 3L_1487346_SNP [dm6]	G	A	3.445e^-4	0.92	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
X	3006822	X_3006822_SNP [dm3] X_3112789_SNP [dm6]	C	T	3.449e^-4	0.92	INTRON kirre
3L	5403206	3L_5403206_SNP [dm3] 3L_5410106_SNP [dm6]	A	C	3.454e^-4	0.92	INTERGENIC
3L	10378486	3L_10378486_SNP [dm3] 3L_10385386_SNP [dm6]	G	A	3.456e^-4	0.92	INTERGENIC
3L	14538339	3L_14538339_SNP [dm3] 3L_14545239_SNP [dm6]	G	T	3.458e^-4	0.92	INTRON CG9238	TF binding site BDTNP1_TFBS_z
3R	22927503	3R_22927503_SNP [dm3] 3R_27101781_SNP [dm6]	G	A	3.459e^-4	0.92	INTRON CG17189
3R	15482172	3R_15482172_SNP [dm3] 3R_19656450_SNP [dm6]	T	C	3.460e^-4	0.92	UTR_5_PRIME CG6184 INTRON CG6184	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	18331441	3R_18331441_SNP [dm3] 3R_22505719_SNP [dm6]	C	T	3.460e^-4	0.92	INTRON Octbeta1R
3R	14756612	3R_14756612_SNP [dm3] 3R_18930890_SNP [dm6]	C	T	3.473e^-4	0.92	INTRON CG42613
3R	9714504	3R_9714504_INS [dm3] 3R_13888782_INS [dm6]	GGA	AATT	3.501e^-4	0.92	INTERGENIC
2R	12566599	2R_12566599_SNP [dm3] 2R_16679094_SNP [dm6]	A	G	3.505e^-4	0.92	INTRON CG30463
2L	6615758	2L_6615758_SNP [dm3] 2L_6615758_SNP [dm6]	A	G	3.507e^-4	0.92	INTRON CG11050
3R	22696155	3R_22696155_SNP [dm3] 3R_26870433_SNP [dm6]	T	A	3.521e^-4	0.92	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	5733954	3L_5733954_SNP [dm3] 3L_5740854_SNP [dm6]	A	C	3.530e^-4	0.92	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
3R	15466078	3R_15466078_SNP [dm3] 3R_19640356_SNP [dm6]	C	G	3.539e^-4	0.92	INTRON subdued
2L	16232942	2L_16232942_SNP [dm3] 2L_16232942_SNP [dm6]	C	T	3.547e^-4	0.92	INTRON CG42817
2R	3776245	2R_3776245_SNP [dm3] 2R_7888740_SNP [dm6]	A	G	3.548e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1265626	3L_1265626_SNP [dm3] 3L_1265626_SNP [dm6]	T	C	3.557e^-4	0.92	UPSTREAM CG9134 INTRON CG9134	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3471289	2L_3471289_SNP [dm3] 2L_3471289_SNP [dm6]	A	C	3.557e^-4	0.92	SYNONYMOUS_CODING CG31776
3R	810193	3R_810193_SNP [dm3] 3R_4984471_SNP [dm6]	C	A	3.560e^-4	0.92	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	9124274	2R_9124274_SNP [dm3] 2R_13236769_SNP [dm6]	A	C	3.565e^-4	0.92	SYNONYMOUS_CODING CG4676 DOWNSTREAM CG4679
2R	8492477	2R_8492477_SNP [dm3] 2R_12604972_SNP [dm6]	G	A	3.566e^-4	0.92	INTRON Amph
3R	810853	3R_810853_SNP [dm3] 3R_4985131_SNP [dm6]	G	T	3.572e^-4	0.92	UPSTREAM CG14662 EXON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	14381776	3R_14381776_SNP [dm3] 3R_18556054_SNP [dm6]	A	T	3.574e^-4	0.92	INTERGENIC
3L	3598350	3L_3598350_SNP [dm3] 3L_3598350_SNP [dm6]	T	A	3.577e^-4	0.92	INTRON Eip63E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18855217	3R_18855217_SNP [dm3] 3R_23029495_SNP [dm6]	T	C	3.580e^-4	0.92	INTERGENIC	regulatory region REDfly_CRMs
3R	15466073	3R_15466073_SNP [dm3] 3R_19640351_SNP [dm6]	G	A	3.585e^-4	0.92	INTRON subdued
2L	3932132	2L_3932132_SNP [dm3] 2L_3932132_SNP [dm6]	A	T	3.586e^-4	0.92	INTRON fred
3L	10359770	3L_10359770_SNP [dm3] 3L_10366670_SNP [dm6]	G	A	3.592e^-4	0.92	EXON CR44327
X	16559062	X_16559062_SNP [dm3] X_16665029_SNP [dm6]	G	A	3.602e^-4	0.92	UPSTREAM CG15865 INTRON r
3L	5160998	3L_5160998_SNP [dm3] 3L_5167898_SNP [dm6]	C	A	3.605e^-4	0.92	INTRON shep
2R	14662687	2R_14662687_SNP [dm3] 2R_18775182_SNP [dm6]	T	C	3.610e^-4	0.92	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10378474	3L_10378474_SNP [dm3] 3L_10385374_SNP [dm6]	T	C	3.612e^-4	0.92	INTERGENIC
X	2933952	X_2933952_SNP [dm3] X_3039919_SNP [dm6]	A	C	3.620e^-4	0.92	INTRON kirre
3L	7277342	3L_7277342_INS [dm3] 3L_7284242_INS [dm6]	A	ACTTAATTAAGGGCAA...	3.622e^-4	0.92	INTRON unc-13-4A
3L	15259542	3L_15259542_SNP [dm3] 3L_15266442_SNP [dm6]	T	C	3.624e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6507119	2R_6507119_SNP [dm3] 2R_10619614_SNP [dm6]	T	G	3.625e^-4	0.92	INTRON CG11883
3R	15466346	3R_15466346_SNP [dm3] 3R_19640624_SNP [dm6]	T	A	3.635e^-4	0.92	INTRON subdued	TF binding site mE1_TFBS_Trl
3L	11671571	3L_11671571_SNP [dm3] 3L_11678471_SNP [dm6]	G	A	3.636e^-4	0.92	INTRON CG32085
3R	3504863	3R_3504863_SNP [dm3] 3R_7679141_SNP [dm6]	T	G	3.640e^-4	0.92	INTRON Nlg1
3R	21791454	3R_21791454_SNP [dm3] 3R_25965732_SNP [dm6]	C	T	3.640e^-4	0.92	SYNONYMOUS_CODING boss	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9109197	3L_9109197_DEL [dm3] 3L_9116097_DEL [dm6]	GGT	G	3.640e^-4	0.92	INTRON bol
3R	14660193	3R_14660193_SNP [dm3] 3R_18834471_SNP [dm6]	A	G	3.652e^-4	0.92	INTRON CG18208
3L	5929632	3L_5929632_SNP [dm3] 3L_5936532_SNP [dm6]	C	T	3.660e^-4	0.92	INTRON CG33993
3L	5929634	3L_5929634_INS [dm3] 3L_5936534_INS [dm6]	T	TAT	3.660e^-4	0.92	INTRON CG33993
3L	5929667	3L_5929667_SNP [dm3] 3L_5936567_SNP [dm6]	C	T	3.660e^-4	0.92	INTRON CG33993
3L	10364326	3L_10364326_SNP [dm3] 3L_10371226_SNP [dm6]	G	A	3.661e^-4	0.92	INTERGENIC
3L	5929618	3L_5929618_SNP [dm3] 3L_5936518_SNP [dm6]	T	C	3.663e^-4	0.92	INTRON CG33993
3L	14140506	3L_14140506_SNP [dm3] 3L_14147406_SNP [dm6]	G	A	3.668e^-4	0.92	INTERGENIC	regulatory region REDfly_CRMs
3R	14596752	3R_14596752_SNP [dm3] 3R_18771030_SNP [dm6]	G	A	3.669e^-4	0.92	INTRON CG7720
3L	13422620	3L_13422620_SNP [dm3] 3L_13429520_SNP [dm6]	A	G	3.672e^-4	0.92	SYNONYMOUS_CODING CG10713	TF binding site mE1_TFBS_chinmo
2L	3221141	2L_3221141_DEL [dm3] 2L_3221141_DEL [dm6]	TGTACGGCC	T	3.672e^-4	0.92	INTERGENIC
2R	13551476	2R_13551476_SNP [dm3] 2R_17663971_SNP [dm6]	G	A	3.674e^-4	0.92	INTRON CCHa1-R
X	13122979	X_13122979_SNP [dm3] X_13228946_SNP [dm6]	A	T	3.678e^-4	0.92	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	22696172	3R_22696172_SNP [dm3] 3R_26870450_SNP [dm6]	A	G	3.690e^-4	0.92	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	4360206	2L_4360206_SNP [dm3] 2L_4360206_SNP [dm6]	G	T	3.691e^-4	0.92	INTERGENIC	regulatory region REDfly_CRMs
2L	21370984	2L_21370984_DEL [dm3] 2L_21370984_DEL [dm6]	TT	T	3.691e^-4	0.92	UPSTREAM CG8665 INTERGENIC
3L	10377566	3L_10377566_SNP [dm3] 3L_10384466_SNP [dm6]	A	C	3.702e^-4	0.92	INTERGENIC
3L	10491783	3L_10491783_SNP [dm3] 3L_10498683_SNP [dm6]	A	G	3.703e^-4	0.92	INTRON A2bp1
2R	18262312	2R_18262312_SNP [dm3] 2R_22374807_SNP [dm6]	G	A	3.703e^-4	0.92	UPSTREAM Rtf1 EXON CR44759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3921156	2R_3921156_SNP [dm3] 2R_8033651_SNP [dm6]	G	A	3.707e^-4	0.92	INTRON Optix
3R	15466148	3R_15466148_SNP [dm3] 3R_19640426_SNP [dm6]	C	T	3.721e^-4	0.92	INTRON subdued
3L	10378204	3L_10378204_SNP [dm3] 3L_10385104_SNP [dm6]	A	G	3.725e^-4	0.92	INTERGENIC
2R	13483874	2R_13483874_SNP [dm3] 2R_17596369_SNP [dm6]	A	T	3.731e^-4	0.92	SYNONYMOUS_CODING CG11423 INTRON lack	TF binding site mE1_TFBS_sens
2L	13824446	2L_13824446_SNP [dm3] 2L_13824446_SNP [dm6]	C	T	3.735e^-4	0.92	SYNONYMOUS_CODING tam DOWNSTREAM b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5361684	3L_5361684_INS [dm3] 3L_5368584_INS [dm6]	T	TG	3.744e^-4	0.92	UPSTREAM CG10635 & 1 other INTERGENIC
X	6336510	X_6336510_SNP [dm3] X_6442477_SNP [dm6]	C	G	3.747e^-4	0.92	INTRON CG42340
2R	17833755	2R_17833755_SNP [dm3] 2R_21946250_SNP [dm6]	A	T	3.749e^-4	0.92	UTR_3_PRIME Fili
3R	9535593	3R_9535593_SNP [dm3] 3R_13709871_SNP [dm6]	T	G	3.750e^-4	0.92	DOWNSTREAM primo-2 & 2 others INTRON CG31469
2R	16282053	2R_16282053_SNP [dm3] 2R_20394548_SNP [dm6]	A	C	3.764e^-4	0.92	INTERGENIC
X	11218320	X_11218320_SNP [dm3] X_11324287_SNP [dm6]	G	A	3.769e^-4	0.92	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	14532035	2R_14532035_SNP [dm3] 2R_18644530_SNP [dm6]	A	T	3.781e^-4	0.92	INTRON SP2637	TF binding site BDTNP1_TFBS_da
3R	14883823	3R_14883823_SNP [dm3] 3R_19058101_SNP [dm6]	A	G	3.789e^-4	0.92	INTRON cdi	TF binding site mE1_TFBS_chinmo
3L	13366739	3L_13366739_SNP [dm3] 3L_13373639_SNP [dm6]	T	A	3.792e^-4	0.92	INTERGENIC
2L	21005606	2L_21005606_SNP [dm3] 2L_21005606_SNP [dm6]	T	A	3.794e^-4	0.92	INTRON CG42238
3R	10870966	3R_10870966_SNP [dm3] 3R_15045244_SNP [dm6]	T	C	3.795e^-4	0.92	INTERGENIC
3R	13768802	3R_13768802_SNP [dm3] 3R_17943080_SNP [dm6]	G	A	3.797e^-4	0.92	INTRON cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
X	10759295	X_10759295_SNP [dm3] X_10865262_SNP [dm6]	C	T	3.813e^-4	0.92	UTR_3_PRIME CG2186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14103689	3R_14103689_SNP [dm3] 3R_18277967_SNP [dm6]	A	T	3.816e^-4	0.92	DOWNSTREAM CG7142 INTRON eIF-1A
3L	13510367	3L_13510367_SNP [dm3] 3L_13517267_SNP [dm6]	T	G	3.817e^-4	0.92	SYNONYMOUS_CODING CG10710 DOWNSTREAM Liprin-beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18829135	3L_18829135_SNP [dm3] 3L_18836035_SNP [dm6]	A	C	3.820e^-4	0.92	INTRON Indy
2R	5298346	2R_5298346_SNP [dm3] 2R_9410841_SNP [dm6]	G	A	3.830e^-4	0.92	INTRON wun
3R	9377040	3R_9377040_SNP [dm3] 3R_13551318_SNP [dm6]	T	A	3.837e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	13789589	3L_13789589_SNP [dm3] 3L_13796489_SNP [dm6]	T	C	3.837e^-4	0.92	INTRON bru-3
3R	23291390	3R_23291390_SNP [dm3] 3R_27465668_SNP [dm6]	G	A	3.841e^-4	0.92	NON_SYNONYMOUS_CODING CG13978
3L	16562689	3L_16562689_SNP [dm3] 3L_16569589_SNP [dm6]	C	G	3.843e^-4	0.92	INTRON Mipp1
2R	15658335	2R_15658335_DEL [dm3] 2R_19770830_DEL [dm6]	TAA	T	3.849e^-4	0.92	INTRON Or56a
3L	14286756	3L_14286756_SNP [dm3] 3L_14293656_SNP [dm6]	T	G	3.855e^-4	0.92	INTRON fz
3L	2465084	3L_2465084_SNP [dm3] 3L_2465084_SNP [dm6]	T	A	3.870e^-4	0.92	DOWNSTREAM CG45186 INTRON CG45186
2L	13251246	2L_13251246_SNP [dm3] 2L_13251246_SNP [dm6]	C	A	3.870e^-4	0.92	UPSTREAM CG31728 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7658465	3L_7658465_SNP [dm3] 3L_7665365_SNP [dm6]	T	C	3.885e^-4	0.92	SYNONYMOUS_CODING CG44195 UTR_3_PRIME Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	7659104	3L_7659104_SNP [dm3] 3L_7666004_SNP [dm6]	A	G	3.885e^-4	0.92	INTRON CG32373 & 2 others	TF binding site mE1_TFBS_inv
3L	7661574	3L_7661574_SNP [dm3] 3L_7668474_SNP [dm6]	A	G	3.885e^-4	0.92	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others
3L	7662042	3L_7662042_SNP [dm3] 3L_7668942_SNP [dm6]	A	G	3.885e^-4	0.92	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others
2R	14663523	2R_14663523_SNP [dm3] 2R_18776018_SNP [dm6]	G	A	3.893e^-4	0.92	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18548422	2R_18548422_DEL [dm3] 2R_22660917_DEL [dm6]	AA	A	3.894e^-4	0.92	DOWNSTREAM CG13511 INTRON CG42565 & 2 others	TF binding site mE1_TFBS_cad
2R	14760140	2R_14760140_DEL [dm3] 2R_18872635_DEL [dm6]	CATAATT	C	3.895e^-4	0.92	INTERGENIC
X	8796211	X_8796211_SNP [dm3] X_8902178_SNP [dm6]	G	A	3.903e^-4	0.92	SYNONYMOUS_CODING Rbm13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16798276	X_16798276_SNP [dm3] X_16904243_SNP [dm6]	A	G	3.918e^-4	0.92	EXON CR44754
2R	13191417	2R_13191417_SNP [dm3] 2R_17303912_SNP [dm6]	C	T	3.921e^-4	0.92	INTRON mbl
2L	3080881	2L_3080881_SNP [dm3] 2L_3080881_SNP [dm6]	C	T	3.921e^-4	0.92	NON_SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15658349	2R_15658349_SNP [dm3] 2R_19770844_SNP [dm6]	C	A	3.927e^-4	0.92	INTRON Or56a
3L	1451060	3L_1451060_SNP [dm3] 3L_1451060_SNP [dm6]	C	G	3.931e^-4	0.92	INTRON Ptp61F
2R	5779845	2R_5779845_SNP [dm3] 2R_9892340_SNP [dm6]	A	T	3.931e^-4	0.92	NON_SYNONYMOUS_CODING CG30007 UPSTREAM CG1513	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11056099	3L_11056099_SNP [dm3] 3L_11062999_SNP [dm6]	C	T	3.940e^-4	0.92	NON_SYNONYMOUS_CODING CG32075 UPSTREAM CG32069 DOWNSTREAM Blos2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	13133858	2R_13133858_SNP [dm3] 2R_17246353_SNP [dm6]	G	C	3.941e^-4	0.92	UPSTREAM CG18469 DOWNSTREAM CG12699 INTRON mbl
2R	5783305	2R_5783305_SNP [dm3] 2R_9895800_SNP [dm6]	C	A	3.941e^-4	0.92	NON_SYNONYMOUS_CODING CG30007
2L	7178152	2L_7178152_SNP [dm3] 2L_7178152_SNP [dm6]	C	T	3.942e^-4	0.92	EXON CR44613
2R	14662730	2R_14662730_SNP [dm3] 2R_18775225_SNP [dm6]	C	G	3.947e^-4	0.92	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14042256	2L_14042256_SNP [dm3] 2L_14042256_SNP [dm6]	G	T	3.950e^-4	0.92	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	3.954e^-4	0.92	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6035240	2L_6035240_SNP [dm3] 2L_6035240_SNP [dm6]	A	T	3.956e^-4	0.92	UPSTREAM CG9109 INTRON mtm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8027900	2L_8027900_SNP [dm3] 2L_8027900_SNP [dm6]	A	G	3.958e^-4	0.92	SYNONYMOUS_CODING CG7367
3R	12618392	3R_12618392_SNP [dm3] 3R_16792670_SNP [dm6]	C	G	3.959e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13966130	2L_13966130_SNP [dm3] 2L_13966130_SNP [dm6]	C	T	3.960e^-4	0.92	INTRON NimB2
2R	5762331	2R_5762331_SNP [dm3] 2R_9874826_SNP [dm6]	C	G	3.974e^-4	0.921	UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17004124	3R_17004124_SNP [dm3] 3R_21178402_SNP [dm6]	A	G	3.984e^-4	0.921	SPLICE_SITE_REGION SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_chinmo
2R	13488665	2R_13488665_SNP [dm3] 2R_17601160_SNP [dm6]	A	T	3.985e^-4	0.921	SYNONYMOUS_CODING lack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3505819	2L_3505819_SNP [dm3] 2L_3505819_SNP [dm6]	A	C	3.989e^-4	0.921	INTRON tim
3R	14432097	3R_14432097_INS [dm3] 3R_18606375_INS [dm6]	T	TTGCCACGG	3.992e^-4	0.921	INTRON qin & 1 other
2L	22312174	2L_22312174_SNP [dm3] 2L_22312174_SNP [dm6]	T	C	4.001e^-4	0.921	INTRON CG17018
2R	5777267	2R_5777267_SNP [dm3] 2R_9889762_SNP [dm6]	G	A	4.002e^-4	0.921	UPSTREAM CG30008 DOWNSTREAM CG12923 INTRON CG1513
3L	15124512	3L_15124512_SNP [dm3] 3L_15131412_SNP [dm6]	G	C	4.010e^-4	0.921	UPSTREAM CG13457 DOWNSTREAM CG12316 INTERGENIC
3L	5761040	3L_5761040_SNP [dm3] 3L_5767940_SNP [dm6]	G	A	4.012e^-4	0.921	SYNONYMOUS_CODING Ppat-Dpck DOWNSTREAM Txl	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	18544286	2R_18544286_SNP [dm3] 2R_22656781_SNP [dm6]	G	T	4.014e^-4	0.921	SYNONYMOUS_CODING CG43325 UTR_5_PRIME CG43326 UPSTREAM CG43326 DOWNSTREAM CR45268	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	15658330	2R_15658330_SNP [dm3] 2R_19770825_SNP [dm6]	A	T	4.025e^-4	0.921	INTRON Or56a
2R	15270817	2R_15270817_SNP [dm3] 2R_19383312_SNP [dm6]	G	A	4.031e^-4	0.921	SYNONYMOUS_CODING CG10073
3R	810197	3R_810197_SNP [dm3] 3R_4984475_SNP [dm6]	T	A	4.035e^-4	0.921	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	8889159	2L_8889159_SNP [dm3] 2L_8889159_SNP [dm6]	A	T	4.037e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
3R	2666690	3R_2666690_SNP [dm3] 3R_6840968_SNP [dm6]	G	A	4.037e^-4	0.921	INTRON Scr	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3L	3871951	3L_3871951_SNP [dm3] 3L_3871951_SNP [dm6]	T	C	4.051e^-4	0.921	INTERGENIC
3L	8251586	3L_8251586_SNP [dm3] 3L_8258486_SNP [dm6]	T	C	4.055e^-4	0.921	INTRON Dscam4
3R	810934	3R_810934_SNP [dm3] 3R_4985212_SNP [dm6]	T	C	4.056e^-4	0.921	UPSTREAM CG14662 INTRON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	17172114	2R_17172114_SNP [dm3] 2R_21284609_SNP [dm6]	T	C	4.057e^-4	0.921	DOWNSTREAM CG10505 INTRON MFS16
2L	14895510	2L_14895510_SNP [dm3] 2L_14895510_SNP [dm6]	C	T	4.060e^-4	0.921	INTERGENIC
3R	15468950	3R_15468950_SNP [dm3] 3R_19643228_SNP [dm6]	T	C	4.072e^-4	0.921	UTR_3_PRIME Vha13 UPSTREAM subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14571981	2R_14571981_SNP [dm3] 2R_18684476_SNP [dm6]	T	A	4.076e^-4	0.921	NON_SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other
2L	10931132	2L_10931132_SNP [dm3] 2L_10931132_SNP [dm6]	A	C	4.080e^-4	0.921	INTRON dpr2
X	14040646	X_14040646_INS [dm3] X_14146613_INS [dm6]	A	AGTGTTAGTAAA...	4.085e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19127135	2R_19127135_SNP [dm3] 2R_23239612_SNP [dm6]	T	A	4.095e^-4	0.921	INTERGENIC
3L	9279507	3L_9279507_SNP [dm3] 3L_9286407_SNP [dm6]	T	C	4.102e^-4	0.921	UTR_3_PRIME GluRIB
3L	8867522	3L_8867522_SNP [dm3] 3L_8874422_SNP [dm6]	C	G	4.102e^-4	0.921	INTRON dally
2L	14771840	2L_14771840_SNP [dm3] 2L_14771840_SNP [dm6]	G	A	4.111e^-4	0.921	INTERGENIC
2L	8126208	2L_8126208_SNP [dm3] 2L_8126208_SNP [dm6]	T	G	4.119e^-4	0.921	SYNONYMOUS_CODING CG12375 UPSTREAM CG8668 DOWNSTREAM CG8673	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	8867454	3L_8867454_SNP [dm3] 3L_8874354_SNP [dm6]	C	A	4.120e^-4	0.921	INTRON dally
3L	13511672	3L_13511672_SNP [dm3] 3L_13518572_SNP [dm6]	G	T	4.129e^-4	0.921	SYNONYMOUS_CODING CG10710	TF binding site mE1_TFBS_cad
2R	12522243	2R_12522243_SNP [dm3] 2R_16634738_SNP [dm6]	T	C	4.130e^-4	0.921	UTR_5_PRIME Alk	TF binding site BDTNP1_TFBS_twi
2R	13181263	2R_13181263_SNP [dm3] 2R_17293758_SNP [dm6]	G	A	4.133e^-4	0.921	INTRON mbl
3R	13556417	3R_13556417_SNP [dm3] 3R_17730695_SNP [dm6]	T	C	4.134e^-4	0.921	SPLICE_SITE_REGION Lgr1 INTRON Lgr1
2R	11797937	2R_11797937_INS [dm3] 2R_15910432_INS [dm6]	G	GAAGGAG	4.137e^-4	0.921	INTRON sli
3R	15814179	3R_15814179_SNP [dm3] 3R_19988457_SNP [dm6]	G	A	4.154e^-4	0.922	INTRON Hs6st	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17076376	2R_17076376_SNP [dm3] 2R_21188871_SNP [dm6]	C	T	4.155e^-4	0.922	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
X	20323165	X_20323165_SNP [dm3] X_20452138_SNP [dm6]	A	C	4.157e^-4	0.922	INTRON CG32506	TF binding site BDTNP1_TFBS_twi
2R	5781559	2R_5781559_SNP [dm3] 2R_9894054_SNP [dm6]	C	T	4.158e^-4	0.922	NON_SYNONYMOUS_CODING CG30007
2R	5791626	2R_5791626_SNP [dm3] 2R_9904121_SNP [dm6]	G	T	4.183e^-4	0.925	UPSTREAM CG1441 INTERGENIC	enhancer mE1_CBP_Enhancers
2L	11110339	2L_11110339_SNP [dm3] 2L_11110339_SNP [dm6]	A	G	4.191e^-4	0.925	SYNONYMOUS_CODING l_2_gd1 DOWNSTREAM CG6201
3L	8251571	3L_8251571_INS [dm3] 3L_8258471_INS [dm6]	C	CCAC	4.199e^-4	0.925	INTRON Dscam4
3R	4822931	3R_4822931_SNP [dm3] 3R_8997209_SNP [dm6]	A	G	4.210e^-4	0.925	UPSTREAM CG11977 INTRON CG31100
2L	3416624	2L_3416624_SNP [dm3] 2L_3416624_SNP [dm6]	T	A	4.212e^-4	0.925	UPSTREAM CG31952 INTRON pgant2
3R	4881211	3R_4881211_SNP [dm3] 3R_9055489_SNP [dm6]	T	C	4.214e^-4	0.925	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	11821984	X_11821984_SNP [dm3] X_11927951_SNP [dm6]	A	G	4.216e^-4	0.925	SYNONYMOUS_CODING CG10362
2R	14662731	2R_14662731_SNP [dm3] 2R_18775226_SNP [dm6]	C	A	4.218e^-4	0.925	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	3699545	3L_3699545_SNP [dm3] 3L_3699545_SNP [dm6]	T	A	4.219e^-4	0.925	INTERGENIC
3R	15509426	3R_15509426_SNP [dm3] 3R_19683704_SNP [dm6]	C	T	4.220e^-4	0.925	INTRON Naam
2L	3891023	2L_3891023_SNP [dm3] 2L_3891023_SNP [dm6]	T	C	4.227e^-4	0.925	UPSTREAM capu INTRON capu
2L	8027903	2L_8027903_SNP [dm3] 2L_8027903_SNP [dm6]	C	A	4.231e^-4	0.925	NON_SYNONYMOUS_CODING CG7367
3L	8167084	3L_8167084_SNP [dm3] 3L_8173984_SNP [dm6]	G	T	4.237e^-4	0.925	NON_SYNONYMOUS_CODING RecQ4	TF binding site mE1_TFBS_chinmo
2R	15690575	2R_15690575_SNP [dm3] 2R_19803070_SNP [dm6]	C	T	4.253e^-4	0.928	DOWNSTREAM tRNA:K2:56EF INTERGENIC
3R	19853562	3R_19853562_SNP [dm3] 3R_24027840_SNP [dm6]	C	T	4.264e^-4	0.928	INTRON KrT95D	TF binding site BDTNP1_TFBS_dl
3L	14140502	3L_14140502_SNP [dm3] 3L_14147402_SNP [dm6]	G	T	4.267e^-4	0.928	INTERGENIC	regulatory region REDfly_CRMs
2R	14662727	2R_14662727_SNP [dm3] 2R_18775222_SNP [dm6]	A	C	4.268e^-4	0.928	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	613050	2L_613050_SNP [dm3] 2L_613050_SNP [dm6]	A	G	4.279e^-4	0.928	INTERGENIC
3L	2735659	3L_2735659_SNP [dm3] 3L_2735659_SNP [dm6]	G	T	4.282e^-4	0.928	UPSTREAM Mrtf INTRON Mrtf
3L	3766591	3L_3766591_SNP [dm3] 3L_3766591_SNP [dm6]	G	A	4.310e^-4	0.929	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18133848	3R_18133848_SNP [dm3] 3R_22308126_SNP [dm6]	G	T	4.310e^-4	0.929	DOWNSTREAM CG34377 INTERGENIC
X	10868959	X_10868959_SNP [dm3] X_10974926_SNP [dm6]	C	A	4.313e^-4	0.929	INTRON CG42339
3L	10491837	3L_10491837_SNP [dm3] 3L_10498737_SNP [dm6]	T	G	4.316e^-4	0.929	INTRON A2bp1
3L	3766419	3L_3766419_SNP [dm3] 3L_3766419_SNP [dm6]	G	A	4.316e^-4	0.929	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13655166	3R_13655166_SNP [dm3] 3R_17829444_SNP [dm6]	G	T	4.318e^-4	0.929	INTRON tinc
2R	18544145	2R_18544145_SNP [dm3] 2R_22656640_SNP [dm6]	G	A	4.325e^-4	0.929	SYNONYMOUS_CODING CG43325 UTR_5_PRIME CG43326 UPSTREAM CG43326 DOWNSTREAM CR45268	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	2682423	X_2682423_SNP [dm3] X_2788390_SNP [dm6]	C	A	4.332e^-4	0.929	INTRON kirre & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16877135	3L_16877135_SNP [dm3] 3L_16884035_SNP [dm6]	A	T	4.337e^-4	0.929	INTRON Lmpt
3L	1694654	3L_1694654_SNP [dm3] 3L_1694654_SNP [dm6]	A	C	4.339e^-4	0.929	INTRON CG7991 & 1 other
2R	15658364	2R_15658364_SNP [dm3] 2R_19770859_SNP [dm6]	A	T	4.340e^-4	0.929	INTRON Or56a
2R	10802177	2R_10802177_SNP [dm3] 2R_14914672_SNP [dm6]	T	G	4.345e^-4	0.929	INTRON CG10249
3R	14458025	3R_14458025_SNP [dm3] 3R_18632303_SNP [dm6]	C	A	4.356e^-4	0.929	INTRON qin & 1 other
3R	23808260	3R_23808260_SNP [dm3] 3R_27982538_SNP [dm6]	A	C	4.361e^-4	0.929	INTRON betaTub97EF
3L	10250300	3L_10250300_SNP [dm3] 3L_10257200_SNP [dm6]	T	A	4.363e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cad
3R	20906872	3R_20906872_SNP [dm3] 3R_25081150_SNP [dm6]	A	G	4.363e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	972861	2L_972861_SNP [dm3] 2L_972861_SNP [dm6]	T	A	4.369e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6509085	2R_6509085_DEL [dm3] 2R_10621580_DEL [dm6]	TA	G	4.376e^-4	0.929	UPSTREAM CG11883 INTRON CG11883
2R	11576104	2R_11576104_SNP [dm3] 2R_15688599_SNP [dm6]	G	A	4.385e^-4	0.929	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19494171	2R_19494171_SNP [dm3] 2R_23606648_SNP [dm6]	T	A	4.387e^-4	0.929	START_GAINED CG17662 UTR_5_PRIME CG17662 DOWNSTREAM CG4019 INTRON CG17664	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11639348	2R_11639348_SNP [dm3] 2R_15751843_SNP [dm6]	T	C	4.394e^-4	0.929	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	24071046	3L_24071046_SNP [dm3] 3L_24077946_SNP [dm6]	G	A	4.406e^-4	0.929	INTRON Snap25
2R	16913279	2R_16913279_SNP [dm3] 2R_21025774_SNP [dm6]	T	C	4.414e^-4	0.929	DOWNSTREAM RIC-3 INTRON CG9350	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13123046	X_13123046_INS [dm3] X_13229013_INS [dm6]	G	GTTGCA	4.414e^-4	0.929	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	2579716	3L_2579716_SNP [dm3] 3L_2579716_SNP [dm6]	C	G	4.428e^-4	0.929	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6336507	X_6336507_INS [dm3] X_6442474_INS [dm6]	T	TAT	4.431e^-4	0.929	INTRON CG42340
2L	8762221	2L_8762221_SNP [dm3] 2L_8762221_SNP [dm6]	C	A	4.432e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cad
X	17333860	X_17333860_SNP [dm3] X_17439827_SNP [dm6]	T	G	4.447e^-4	0.929	INTRON CG12994
3L	13382978	3L_13382978_SNP [dm3] 3L_13389878_SNP [dm6]	C	T	4.461e^-4	0.929	UTR_5_PRIME Poc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11938609	3L_11938609_SNP [dm3] 3L_11945509_SNP [dm6]	G	C	4.462e^-4	0.929	UPSTREAM CG5883 DOWNSTREAM mir-285 INTERGENIC
3L	13511630	3L_13511630_SNP [dm3] 3L_13518530_SNP [dm6]	G	A	4.462e^-4	0.929	SYNONYMOUS_CODING CG10710	TF binding site mE1_TFBS_cad
2R	19572612	2R_19572612_SNP [dm3] 2R_23685089_SNP [dm6]	G	A	4.476e^-4	0.929	SYNONYMOUS_CODING l_2_efl DOWNSTREAM St3 INTRON St3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	8957023	X_8957023_SNP [dm3] X_9062990_SNP [dm6]	T	C	4.476e^-4	0.929	INTRON CG15365
3R	15354270	3R_15354270_SNP [dm3] 3R_19528548_SNP [dm6]	A	G	4.488e^-4	0.929	INTRON Dys
2R	14757679	2R_14757679_SNP [dm3] 2R_18870174_SNP [dm6]	A	G	4.488e^-4	0.929	INTERGENIC
3L	3767878	3L_3767878_SNP [dm3] 3L_3767878_SNP [dm6]	T	A	4.489e^-4	0.929	INTRON CG32264	TF binding site mE1_TFBS_bab1
3L	5485834	3L_5485834_SNP [dm3] 3L_5492734_SNP [dm6]	T	A	4.495e^-4	0.929	DOWNSTREAM CR44520 INTERGENIC
3R	23474681	3R_23474681_SNP [dm3] 3R_27648959_SNP [dm6]	T	C	4.496e^-4	0.929	NON_SYNONYMOUS_CODING tau INTRON tau
2R	9123769	2R_9123769_SNP [dm3] 2R_13236264_SNP [dm6]	C	A	4.504e^-4	0.929	UPSTREAM CG4670 DOWNSTREAM CG4679 INTRON CG4676	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1196053	2L_1196053_SNP [dm3] 2L_1196053_SNP [dm6]	C	T	4.514e^-4	0.929	INTRON CG5001
3L	11870631	3L_11870631_SNP [dm3] 3L_11877531_SNP [dm6]	C	G	4.519e^-4	0.929	INTRON CG44837
2R	18349556	2R_18349556_SNP [dm3] 2R_22462051_SNP [dm6]	C	T	4.521e^-4	0.929	INTRON CG10384
2L	2026456	2L_2026456_SNP [dm3] 2L_2026456_SNP [dm6]	G	C	4.522e^-4	0.929	INTRON CG4238
2L	2026459	2L_2026459_DEL [dm3] 2L_2026459_DEL [dm6]	ATAAAATG	C	4.522e^-4	0.929	INTRON CG4238
3L	5993527	3L_5993527_SNP [dm3] 3L_6000427_SNP [dm6]	T	A	4.523e^-4	0.929	INTRON PVRAP
2L	1255845	2L_1255845_SNP [dm3] 2L_1255845_SNP [dm6]	A	T	4.523e^-4	0.929	UPSTREAM robo3 INTERGENIC
2R	15768682	2R_15768682_SNP [dm3] 2R_19881177_SNP [dm6]	T	G	4.524e^-4	0.929	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	17239304	X_17239304_SNP [dm3] X_17345271_SNP [dm6]	A	T	4.525e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9465709	2L_9465709_SNP [dm3] 2L_9465709_SNP [dm6]	A	G	4.526e^-4	0.929	INTERGENIC
2R	20222392	2R_20222392_SNP [dm3] 2R_24334869_SNP [dm6]	T	C	4.539e^-4	0.929	UPSTREAM slbo EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	8844674	3L_8844674_SNP [dm3] 3L_8851574_SNP [dm6]	A	G	4.560e^-4	0.929	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	7011906	3L_7011906_SNP [dm3] 3L_7018806_SNP [dm6]	C	A	4.561e^-4	0.929	INTRON Mp
3L	10362229	3L_10362229_SNP [dm3] 3L_10369129_SNP [dm6]	T	A	4.576e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5510321	3L_5510321_INS [dm3] 3L_5517221_INS [dm6]	T	TT	4.596e^-4	0.929	INTRON Lkr
3L	9280086	3L_9280086_SNP [dm3] 3L_9286986_SNP [dm6]	T	C	4.601e^-4	0.929	UTR_3_PRIME GluRIB DOWNSTREAM GluRIB
3R	13240705	3R_13240705_SNP [dm3] 3R_17414983_SNP [dm6]	C	T	4.603e^-4	0.929	UPSTREAM CG5866 DOWNSTREAM CG42822 INTERGENIC
3R	9370361	3R_9370361_SNP [dm3] 3R_13544639_SNP [dm6]	G	A	4.607e^-4	0.929	SYNONYMOUS_CODING CG31337
3R	19768248	3R_19768248_SNP [dm3] 3R_23942526_SNP [dm6]	T	G	4.609e^-4	0.929	INTRON Gdh	TF binding site BDTNP1_TFBS_twi
3L	4493304	3L_4493304_SNP [dm3] 3L_4493304_SNP [dm6]	G	T	4.616e^-4	0.929	INTERGENIC
2R	5170489	2R_5170489_SNP [dm3] 2R_9282984_SNP [dm6]	T	A	4.619e^-4	0.929	INTRON Pkn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	13789590	3L_13789590_SNP [dm3] 3L_13796490_SNP [dm6]	G	T	4.619e^-4	0.929	INTRON bru-3
X	13123028	X_13123028_DEL [dm3] X_13228995_DEL [dm6]	AAATTCTAGTCTAAATAC...	A	4.625e^-4	0.929	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	23969600	3R_23969600_SNP [dm3] 3R_28143878_SNP [dm6]	C	G	4.627e^-4	0.929	INTERGENIC
2L	19824494	2L_19824494_SNP [dm3] 2L_19824494_SNP [dm6]	A	G	4.627e^-4	0.929	INTRON sick
3L	10424226	3L_10424226_SNP [dm3] 3L_10431126_SNP [dm6]	C	T	4.627e^-4	0.929	SYNONYMOUS_CODING Ir67b
2L	3657765	2L_3657765_SNP [dm3] 2L_3657765_SNP [dm6]	A	T	4.629e^-4	0.929	UPSTREAM for INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18544363	2R_18544363_SNP [dm3] 2R_22656858_SNP [dm6]	A	G	4.632e^-4	0.929	SYNONYMOUS_CODING CG43325 START_GAINED CG43326 UTR_5_PRIME CG43326 UPSTREAM CG43326 DOWNSTREAM CR45268	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	1059221	2L_1059221_SNP [dm3] 2L_1059221_SNP [dm6]	A	G	4.643e^-4	0.929	INTRON S	TF binding site mE1_TFBS_HSA
3L	12068717	3L_12068717_SNP [dm3] 3L_12075617_SNP [dm6]	T	G	4.649e^-4	0.929	INTRON Sema-5c
3R	10688193	3R_10688193_SNP [dm3] 3R_14862471_SNP [dm6]	A	G	4.651e^-4	0.929	INTRON btsz
3L	18794686	3L_18794686_SNP [dm3] 3L_18801586_SNP [dm6]	T	C	4.654e^-4	0.929	UPSTREAM ftz-f1 DOWNSTREAM CG14073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14894389	2L_14894389_SNP [dm3] 2L_14894389_SNP [dm6]	T	C	4.663e^-4	0.929	INTERGENIC
2L	4622875	2L_4622875_SNP [dm3] 2L_4622875_SNP [dm6]	C	T	4.666e^-4	0.929	INTERGENIC
2R	13405958	2R_13405958_SNP [dm3] 2R_17518453_SNP [dm6]	T	G	4.669e^-4	0.929	UPSTREAM APC10 DOWNSTREAM Patronin INTRON CG4866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7573783	2L_7573783_SNP [dm3] 2L_7573783_SNP [dm6]	C	T	4.675e^-4	0.929	INTRON RapGAP1
3L	15255045	3L_15255045_SNP [dm3] 3L_15261945_SNP [dm6]	A	G	4.677e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12709592	2R_12709592_SNP [dm3] 2R_16822087_SNP [dm6]	T	G	4.679e^-4	0.929	INTERGENIC
2R	18183655	2R_18183655_SNP [dm3] 2R_22296150_SNP [dm6]	A	G	4.681e^-4	0.929	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad
2R	17846136	2R_17846136_SNP [dm3] 2R_21958631_SNP [dm6]	A	T	4.682e^-4	0.929	INTERGENIC
2R	16733273	2R_16733273_SNP [dm3] 2R_20845768_SNP [dm6]	G	T	4.683e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11976657	2R_11976657_SNP [dm3] 2R_16089152_SNP [dm6]	C	T	4.694e^-4	0.929	SYNONYMOUS_CODING Dg
3L	4169974	3L_4169974_SNP [dm3] 3L_4169974_SNP [dm6]	G	A	4.700e^-4	0.929	UPSTREAM Ero1L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	9576246	3L_9576246_SNP [dm3] 3L_9583146_SNP [dm6]	C	A	4.709e^-4	0.929	UPSTREAM CG42673 INTRON CG42673
3R	12618396	3R_12618396_SNP [dm3] 3R_16792674_SNP [dm6]	T	C	4.709e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10496040	3L_10496040_SNP [dm3] 3L_10502940_SNP [dm6]	A	T	4.728e^-4	0.929	INTRON A2bp1
3L	14034708	3L_14034708_DEL [dm3] 3L_14041608_DEL [dm6]	TT	T	4.730e^-4	0.929	INTRON Hsc70Cb
2R	17097759	2R_17097759_SNP [dm3] 2R_21210254_SNP [dm6]	C	T	4.733e^-4	0.929	SYNONYMOUS_CODING Glycogenin UTR_3_PRIME Glycogenin UPSTREAM CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3R	12727771	3R_12727771_INS [dm3] 3R_16902049_INS [dm6]	C	CAC	4.738e^-4	0.929	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12280690	2L_12280690_SNP [dm3] 2L_12280690_SNP [dm6]	A	C	4.756e^-4	0.929	INTRON aret	TF binding site mE1_TFBS_sbb
2L	4976930	2L_4976930_SNP [dm3] 2L_4976930_SNP [dm6]	T	G	4.764e^-4	0.929	UTR_5_PRIME Gmd UPSTREAM CG3792	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	11087617	2L_11087617_DEL [dm3] 2L_11087617_DEL [dm6]	CATGGGTAC	C	4.765e^-4	0.929	UPSTREAM CG16854 INTRON CG16854
2R	13920139	2R_13920139_SNP [dm3] 2R_18032634_SNP [dm6]	A	G	4.765e^-4	0.929	INTERGENIC
3L	12123844	3L_12123844_SNP [dm3] 3L_12130744_SNP [dm6]	C	T	4.772e^-4	0.929	SYNONYMOUS_CODING Lsp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6916972	2R_6916972_SNP [dm3] 2R_11029467_SNP [dm6]	C	G	4.773e^-4	0.929	INTRON luna	TF binding site mE1_TFBS_chinmo
2L	18914062	2L_18914062_SNP [dm3] 2L_18914062_SNP [dm6]	A	T	4.776e^-4	0.929	INTERGENIC
2L	8534074	2L_8534074_SNP [dm3] 2L_8534074_SNP [dm6]	C	T	4.781e^-4	0.929	INTRON CG17834	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
3L	10491793	3L_10491793_SNP [dm3] 3L_10498693_SNP [dm6]	T	G	4.784e^-4	0.929	INTRON A2bp1
3R	12461763	3R_12461763_SNP [dm3] 3R_16636041_SNP [dm6]	T	G	4.790e^-4	0.929	SYNONYMOUS_CODING Fas1
3R	15808302	3R_15808302_SNP [dm3] 3R_19982580_SNP [dm6]	T	C	4.801e^-4	0.929	INTRON Hs6st
3L	10360894	3L_10360894_SNP [dm3] 3L_10367794_SNP [dm6]	C	T	4.809e^-4	0.929	DOWNSTREAM CR44327 INTERGENIC
2R	12559260	2R_12559260_SNP [dm3] 2R_16671755_SNP [dm6]	G	A	4.810e^-4	0.929	UTR_3_PRIME CG34457 UPSTREAM CG34458
2R	13024462	2R_13024462_SNP [dm3] 2R_17136957_SNP [dm6]	C	T	4.813e^-4	0.929	UPSTREAM CG11395 DOWNSTREAM CR44391 & 1 other INTERGENIC
2L	12282462	2L_12282462_SNP [dm3] 2L_12282462_SNP [dm6]	G	C	4.820e^-4	0.929	INTRON aret
2L	5429431	2L_5429431_SNP [dm3] 2L_5429431_SNP [dm6]	A	T	4.821e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15749205	2L_15749205_SNP [dm3] 2L_15749205_SNP [dm6]	A	G	4.822e^-4	0.929	DOWNSTREAM l_2_35Di & 1 other INTERGENIC
3R	11980357	3R_11980357_SNP [dm3] 3R_16154635_SNP [dm6]	A	T	4.835e^-4	0.929	UPSTREAM CG6006 INTERGENIC
3R	12672498	3R_12672498_SNP [dm3] 3R_16846776_SNP [dm6]	A	T	4.843e^-4	0.929	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	16628582	3L_16628582_SNP [dm3] 3L_16635482_SNP [dm6]	A	T	4.846e^-4	0.929	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6981959	2R_6981959_SNP [dm3] 2R_11094454_SNP [dm6]	T	C	4.864e^-4	0.929	INTRON luna	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	11287988	X_11287988_SNP [dm3] X_11393955_SNP [dm6]	T	G	4.866e^-4	0.929	INTRON dlg1
2R	18015420	2R_18015420_SNP [dm3] 2R_22127915_SNP [dm6]	T	C	4.868e^-4	0.929	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D
3R	9535571	3R_9535571_SNP [dm3] 3R_13709849_SNP [dm6]	T	G	4.874e^-4	0.929	SYNONYMOUS_CODING CG31469 DOWNSTREAM primo-2 & 2 others
3R	20975432	3R_20975432_SNP [dm3] 3R_25149710_SNP [dm6]	A	C	4.881e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18543147	2R_18543147_SNP [dm3] 2R_22655642_SNP [dm6]	A	T	4.885e^-4	0.929	SYNONYMOUS_CODING CG43326 UTR_3_PRIME CG43325 UPSTREAM CG30196 DOWNSTREAM CG43325 EXON CR45268	TF binding site mE1_TFBS_cad
2L	10916191	2L_10916191_SNP [dm3] 2L_10916191_SNP [dm6]	A	C	4.886e^-4	0.929	DOWNSTREAM dpr2 INTERGENIC
2L	15461232	2L_15461232_SNP [dm3] 2L_15461232_SNP [dm6]	C	T	4.891e^-4	0.929	INTERGENIC
2L	10687518	2L_10687518_SNP [dm3] 2L_10687518_SNP [dm6]	T	C	4.894e^-4	0.929	UPSTREAM CG7296 INTERGENIC
3R	810200	3R_810200_INS [dm3] 3R_4984478_INS [dm6]	A	ACA	4.903e^-4	0.929	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	13184218	2R_13184218_SNP [dm3] 2R_17296713_SNP [dm6]	A	C	4.911e^-4	0.929	INTRON mbl
3R	23556768	3R_23556768_DEL [dm3] 3R_27731046_DEL [dm6]	TT	T	4.913e^-4	0.929	INTERGENIC
3L	4493396	3L_4493396_SNP [dm3] 3L_4493396_SNP [dm6]	C	G	4.920e^-4	0.929	DOWNSTREAM CR44709 INTERGENIC
2L	10440678	2L_10440678_SNP [dm3] 2L_10440678_SNP [dm6]	T	C	4.923e^-4	0.929	UTR_3_PRIME CG13142
2R	16407839	2R_16407839_SNP [dm3] 2R_20520334_SNP [dm6]	G	A	4.926e^-4	0.929	INTERGENIC
X	14040673	X_14040673_SNP [dm3] X_14146640_SNP [dm6]	T	A	4.929e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1377954	2L_1377954_SNP [dm3] 2L_1377954_SNP [dm6]	G	A	4.932e^-4	0.929	INTERGENIC
2L	11103182	2L_11103182_SNP [dm3] 2L_11103182_SNP [dm6]	A	G	4.942e^-4	0.929	INTRON Reps
3L	3986448	3L_3986448_SNP [dm3] 3L_3986448_SNP [dm6]	A	T	4.944e^-4	0.929	INTRON scrt	TF binding site mE1_TFBS_cad
3R	13375841	3R_13375841_SNP [dm3] 3R_17550119_SNP [dm6]	A	C	4.947e^-4	0.929	INTERGENIC
2R	13477516	2R_13477516_SNP [dm3] 2R_17590011_SNP [dm6]	A	G	4.949e^-4	0.929	SYNONYMOUS_CODING RhoGAP54D UPSTREAM icln	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	16924698	3L_16924698_SNP [dm3] 3L_16931598_SNP [dm6]	A	C	4.951e^-4	0.929	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
3R	23969599	3R_23969599_SNP [dm3] 3R_28143877_SNP [dm6]	G	T	4.952e^-4	0.929	INTERGENIC
X	9632417	X_9632417_SNP [dm3] X_9738384_SNP [dm6]	G	A	4.956e^-4	0.929	INTRON Sp1
3L	2987789	3L_2987789_SNP [dm3] 3L_2987789_SNP [dm6]	G	A	4.959e^-4	0.929	INTERGENIC
3L	22331231	3L_22331231_SNP [dm3] 3L_22338131_SNP [dm6]	G	T	4.979e^-4	0.929	INTRON Ten-m
2L	7219737	2L_7219737_SNP [dm3] 2L_7219737_SNP [dm6]	C	G	4.983e^-4	0.929	UTR_5_PRIME CG13784 UPSTREAM CR44989 DOWNSTREAM ico INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

Cuticul_6_C26_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results