DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.378e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.005112
In_3R_K	4.867e-05

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.0894	0.0785
In_3R_K	11.7572	0.0028

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1788 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	5778612	2R_5778612_SNP [dm3] 2R_9891107_SNP [dm6]	G	A	8.451e^-8	0.097	UTR_3_PRIME CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2R	5781559	2R_5781559_SNP [dm3] 2R_9894054_SNP [dm6]	C	T	1.509e^-7	0.097	NON_SYNONYMOUS_CODING CG30007
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	1.545e^-7	0.097	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	2.565e^-7	0.105	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
2R	5779845	2R_5779845_SNP [dm3] 2R_9892340_SNP [dm6]	A	T	3.622e^-7	0.105	NON_SYNONYMOUS_CODING CG30007 UPSTREAM CG1513	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5780076	2R_5780076_SNP [dm3] 2R_9892571_SNP [dm6]	A	G	3.692e^-7	0.105	UPSTREAM CG1513 INTRON CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5777267	2R_5777267_SNP [dm3] 2R_9889762_SNP [dm6]	G	A	3.927e^-7	0.105	UPSTREAM CG30008 DOWNSTREAM CG12923 INTRON CG1513
2R	5781414	2R_5781414_SNP [dm3] 2R_9893909_SNP [dm6]	T	A	5.282e^-7	0.124	INTRON CG30007
2R	5781437	2R_5781437_SNP [dm3] 2R_9893932_SNP [dm6]	A	C	7.198e^-7	0.15	INTRON CG30007
2R	5780578	2R_5780578_SNP [dm3] 2R_9893073_SNP [dm6]	T	A	8.875e^-7	0.166	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
3R	12727771	3R_12727771_INS [dm3] 3R_16902049_INS [dm6]	C	CAC	1.854e^-6	0.316	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5783798	2R_5783798_SNP [dm3] 2R_9896293_SNP [dm6]	G	T	2.125e^-6	0.332	NON_SYNONYMOUS_CODING CG30007
3L	5896297	3L_5896297_SNP [dm3] 3L_5903197_SNP [dm6]	A	G	2.961e^-6	0.412	SYNONYMOUS_CODING CG32413 UPSTREAM QC
3R	8216558	3R_8216558_SNP [dm3] 3R_12390836_SNP [dm6]	C	T	3.254e^-6	0.412	UTR_3_PRIME CG10096 & 1 other INTRON CG34402
2L	11348894	2L_11348894_MNP [dm3] 2L_11348894_MNP [dm6]	GAG	ACA	3.295e^-6	0.412	INTERGENIC	regulatory region REDfly_CRMs
2R	5741733	2R_5741733_SNP [dm3] 2R_9854228_SNP [dm6]	A	G	4.575e^-6	0.525	INTRON CG1516	TF binding site mE1_TFBS_cad
2R	3775699	2R_3775699_SNP [dm3] 2R_7888194_SNP [dm6]	A	G	4.859e^-6	0.525	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5784919	2R_5784919_SNP [dm3] 2R_9897414_SNP [dm6]	A	C	5.340e^-6	0.525	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5783795	2R_5783795_SNP [dm3] 2R_9896290_SNP [dm6]	C	A	5.374e^-6	0.525	NON_SYNONYMOUS_CODING CG30007
3L	4104457	3L_4104457_SNP [dm3] 3L_4104457_SNP [dm6]	G	A	5.599e^-6	0.525	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	9200421	X_9200421_SNP [dm3] X_9306388_SNP [dm6]	A	T	6.007e^-6	0.537	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5785120	2R_5785120_SNP [dm3] 2R_9897615_SNP [dm6]	C	T	6.917e^-6	0.572	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8904984	2R_8904984_SNP [dm3] 2R_13017479_SNP [dm6]	C	T	7.014e^-6	0.572	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16128695	2R_16128695_SNP [dm3] 2R_20241190_SNP [dm6]	T	C	7.408e^-6	0.579	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_cad
2R	5785090	2R_5785090_SNP [dm3] 2R_9897585_SNP [dm6]	T	C	8.623e^-6	0.647	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5785084	2R_5785084_SNP [dm3] 2R_9897579_SNP [dm6]	C	A	9.031e^-6	0.652	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17428877	2R_17428877_SNP [dm3] 2R_21541372_SNP [dm6]	T	G	9.519e^-6	0.658	UPSTREAM CG30283 INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	17747302	3R_17747302_SNP [dm3] 3R_21921580_SNP [dm6]	T	C	9.828e^-6	0.658	INTERGENIC
3R	26174403	3R_26174403_SNP [dm3] 3R_30348681_SNP [dm6]	T	G	1.054e^-5	0.682	INTRON hdc
3L	5896721	3L_5896721_SNP [dm3] 3L_5903621_SNP [dm6]	T	G	1.133e^-5	0.686	SYNONYMOUS_CODING CG32413 DOWNSTREAM CG10486
2R	16128827	2R_16128827_SNP [dm3] 2R_20241322_SNP [dm6]	A	G	1.150e^-5	0.686	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_cad
2R	16129116	2R_16129116_SNP [dm3] 2R_20241611_SNP [dm6]	T	C	1.171e^-5	0.686	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_cad
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	1.221e^-5	0.686	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
3L	8918549	3L_8918549_SNP [dm3] 3L_8925449_SNP [dm6]	G	A	1.243e^-5	0.686	INTRON Tsp66E	TF binding site BDTNP1_TFBS_twi
2R	5735501	2R_5735501_SNP [dm3] 2R_9847996_SNP [dm6]	T	A	1.383e^-5	0.741	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	791508	2R_791508_SNP [dm3] 2R_4904003_SNP [dm6]	C	G	1.462e^-5	0.745	INTRON CG44102	transposable element FlyBase
3R	23269918	3R_23269918_SNP [dm3] 3R_27444196_SNP [dm6]	G	C	1.470e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	5783305	2R_5783305_SNP [dm3] 2R_9895800_SNP [dm6]	C	A	1.526e^-5	0.753	NON_SYNONYMOUS_CODING CG30007
2L	5385812	2L_5385812_SNP [dm3] 2L_5385812_SNP [dm6]	G	A	1.714e^-5	0.816	INTERGENIC
2R	5735502	2R_5735502_SNP [dm3] 2R_9847997_SNP [dm6]	C	A	1.786e^-5	0.816	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	22060162	3R_22060162_SNP [dm3] 3R_26234440_SNP [dm6]	A	C	1.826e^-5	0.816	UTR_3_PRIME CG12290 UPSTREAM CR42745
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	1.861e^-5	0.816	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
2R	5731332	2R_5731332_SNP [dm3] 2R_9843827_SNP [dm6]	C	T	1.870e^-5	0.816	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	3195187	2L_3195187_SNP [dm3] 2L_3195187_SNP [dm6]	A	T	2.070e^-5	0.882	INTRON CG34393
3R	21009365	3R_21009365_SNP [dm3] 3R_25183643_SNP [dm6]	T	C	2.164e^-5	0.893	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	834085	3L_834085_SNP [dm3] 3L_834085_SNP [dm6]	C	T	2.192e^-5	0.893	UPSTREAM CG42553 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21510307	3R_21510307_SNP [dm3] 3R_25684585_SNP [dm6]	G	C	2.340e^-5	0.893	DOWNSTREAM CG5028 & 1 other INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	4734212	2L_4734212_SNP [dm3] 2L_4734212_SNP [dm6]	C	T	2.371e^-5	0.893	NON_SYNONYMOUS_CODING CG15631 DOWNSTREAM CG15630
3L	5929782	3L_5929782_SNP [dm3] 3L_5936682_SNP [dm6]	C	T	2.401e^-5	0.893	INTRON CG33993
2R	19607726	2R_19607726_SNP [dm3] 2R_23720203_SNP [dm6]	C	G	2.426e^-5	0.893	UPSTREAM CG18128 DOWNSTREAM CR45325 INTRON Sesn
2L	8371547	2L_8371547_SNP [dm3] 2L_8371547_SNP [dm6]	C	T	2.440e^-5	0.893	UPSTREAM CR45341 & 1 other INTRON CG17292
3R	21009368	3R_21009368_SNP [dm3] 3R_25183646_SNP [dm6]	T	A	2.526e^-5	0.893	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	5896439	3L_5896439_SNP [dm3] 3L_5903339_SNP [dm6]	T	A	2.724e^-5	0.893	NON_SYNONYMOUS_CODING CG32413 UPSTREAM QC DOWNSTREAM CG10486
2R	1675996	2R_1675996_SNP [dm3] 2R_5788491_SNP [dm6]	C	T	2.780e^-5	0.893	INTERGENIC
X	10889272	X_10889272_SNP [dm3] X_10995239_SNP [dm6]	A	T	2.804e^-5	0.893	INTRON CG42339
3L	8278364	3L_8278364_SNP [dm3] 3L_8285264_SNP [dm6]	C	G	2.805e^-5	0.893	INTRON cert	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	3972497	3L_3972497_SNP [dm3] 3L_3972497_SNP [dm6]	T	A	2.962e^-5	0.893	UPSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs
3R	21510290	3R_21510290_SNP [dm3] 3R_25684568_SNP [dm6]	T	A	3.098e^-5	0.893	DOWNSTREAM CG5028 & 1 other INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	17367115	X_17367115_SNP [dm3] X_17473082_SNP [dm6]	A	G	3.153e^-5	0.893	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	5736012	2R_5736012_SNP [dm3] 2R_9848507_SNP [dm6]	G	A	3.166e^-5	0.893	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5717075	2R_5717075_SNP [dm3] 2R_9829570_SNP [dm6]	G	A	3.289e^-5	0.893	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	3.306e^-5	0.893	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
2R	3776245	2R_3776245_SNP [dm3] 2R_7888740_SNP [dm6]	A	G	3.316e^-5	0.893	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11348978	2L_11348978_SNP [dm3] 2L_11348978_SNP [dm6]	G	T	3.320e^-5	0.893	INTERGENIC	regulatory region REDfly_CRMs
2L	521484	2L_521484_INS [dm3] 2L_521484_INS [dm6]	T	TG	3.363e^-5	0.893	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	521499	2L_521499_SNP [dm3] 2L_521499_SNP [dm6]	A	C	3.363e^-5	0.893	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	521495	2L_521495_SNP [dm3] 2L_521495_SNP [dm6]	G	A	3.482e^-5	0.893	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23888969	3R_23888969_SNP [dm3] 3R_28063247_SNP [dm6]	C	G	3.488e^-5	0.893	INTRON CG34362
2L	4734214	2L_4734214_SNP [dm3] 2L_4734214_SNP [dm6]	G	C	3.508e^-5	0.893	NON_SYNONYMOUS_CODING CG15631 DOWNSTREAM CG15630
2L	521481	2L_521481_SNP [dm3] 2L_521481_SNP [dm6]	A	G	3.559e^-5	0.893	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	5735512	2R_5735512_SNP [dm3] 2R_9848007_SNP [dm6]	C	T	3.603e^-5	0.893	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	14265705	2L_14265705_SNP [dm3] 2L_14265705_SNP [dm6]	A	T	3.909e^-5	0.893	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	21510268	3R_21510268_SNP [dm3] 3R_25684546_SNP [dm6]	A	T	3.911e^-5	0.893	DOWNSTREAM CG5028 & 1 other INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	23269915	3R_23269915_SNP [dm3] 3R_27444193_SNP [dm6]	G	T	3.973e^-5	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	8260957	3L_8260957_SNP [dm3] 3L_8267857_SNP [dm6]	C	T	4.086e^-5	0.893	INTRON Dscam4
2L	521464	2L_521464_DEL [dm3] 2L_521464_DEL [dm6]	GCC	T	4.114e^-5	0.893	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	521545	2L_521545_SNP [dm3] 2L_521545_SNP [dm6]	T	G	4.114e^-5	0.893	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	5735871	2R_5735871_SNP [dm3] 2R_9848366_SNP [dm6]	G	T	4.169e^-5	0.893	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5695825	3L_5695825_SNP [dm3] 3L_5702725_SNP [dm6]	T	G	4.315e^-5	0.893	INTRON sif
2R	17087274	2R_17087274_SNP [dm3] 2R_21199769_SNP [dm6]	G	A	4.318e^-5	0.893	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	20229884	2R_20229884_SNP [dm3] 2R_24342361_SNP [dm6]	G	T	4.333e^-5	0.893	UPSTREAM bs INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	11221030	X_11221030_SNP [dm3] X_11326997_SNP [dm6]	A	G	4.478e^-5	0.893	INTRON CG1657	TF binding site BDTNP1_TFBS_dl
X	13679561	X_13679561_SNP [dm3] X_13785528_SNP [dm6]	C	T	4.487e^-5	0.893	INTRON inaE
3R	23888966	3R_23888966_SNP [dm3] 3R_28063244_SNP [dm6]	C	T	4.631e^-5	0.893	INTRON CG34362
3L	5382358	3L_5382358_DEL [dm3] 3L_5389258_DEL [dm6]	TACT	T	4.671e^-5	0.893	INTERGENIC
2L	581351	2L_581351_SNP [dm3] 2L_581351_SNP [dm6]	T	C	4.720e^-5	0.893	INTERGENIC
3L	6389265	3L_6389265_SNP [dm3] 3L_6396165_SNP [dm6]	T	A	4.812e^-5	0.893	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13296286	2L_13296286_SNP [dm3] 2L_13296286_SNP [dm6]	A	G	4.815e^-5	0.893	UPSTREAM CG31729 INTRON CG31729	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	827281	2R_827281_SNP [dm3] 2R_4939776_SNP [dm6]	C	T	4.816e^-5	0.893	INTRON Ir41a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13920115	2R_13920115_SNP [dm3] 2R_18032610_SNP [dm6]	T	A	4.817e^-5	0.893	INTERGENIC
2L	6161609	2L_6161609_SNP [dm3] 2L_6161609_SNP [dm6]	C	G	4.875e^-5	0.893	DOWNSTREAM CG13989 INTERGENIC
2R	5742476	2R_5742476_SNP [dm3] 2R_9854971_SNP [dm6]	T	C	4.945e^-5	0.893	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16868262	X_16868262_SNP [dm3] X_16974229_SNP [dm6]	G	A	5.133e^-5	0.893	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	8379853	2L_8379853_SNP [dm3] 2L_8379853_SNP [dm6]	C	G	5.175e^-5	0.893	NON_SYNONYMOUS_CODING Aats-ala	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11639782	3R_11639782_SNP [dm3] 3R_15814060_SNP [dm6]	C	T	5.180e^-5	0.893	INTRON alpha-Man-IIb
3L	8261751	3L_8261751_SNP [dm3] 3L_8268651_SNP [dm6]	A	T	5.222e^-5	0.893	INTRON Dscam4
2R	827301	2R_827301_INS [dm3] 2R_4939796_INS [dm6]	T	TCAACC	5.234e^-5	0.893	INTRON Ir41a	TF binding site mE1_TFBS_sens
2L	7512982	2L_7512982_SNP [dm3] 2L_7512982_SNP [dm6]	C	T	5.251e^-5	0.893	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	9505713	X_9505713_SNP [dm3] X_9611680_SNP [dm6]	C	A	5.260e^-5	0.893	NON_SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21510309	3R_21510309_SNP [dm3] 3R_25684587_SNP [dm6]	C	A	5.305e^-5	0.893	DOWNSTREAM CG5028 & 1 other INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	14620602	2L_14620602_DEL [dm3] 2L_14620602_DEL [dm6]	GGTAG	G	5.367e^-5	0.893	INTRON osp
2L	521504	2L_521504_SNP [dm3] 2L_521504_SNP [dm6]	A	G	5.383e^-5	0.893	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	5769396	2R_5769396_SNP [dm3] 2R_9881891_SNP [dm6]	T	A	5.388e^-5	0.893	UTR_5_PRIME Sec24AB DOWNSTREAM CG1513 INTRON Sec24AB EXON CR45467	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5741204	2R_5741204_SNP [dm3] 2R_9853699_SNP [dm6]	T	C	5.405e^-5	0.893	SYNONYMOUS_CODING CG1516 INTRON CG1516
2L	552736	2L_552736_SNP [dm3] 2L_552736_SNP [dm6]	T	C	5.433e^-5	0.893	START_GAINED Ets21C UTR_5_PRIME Ets21C UPSTREAM Ets21C
2L	5386168	2L_5386168_SNP [dm3] 2L_5386168_SNP [dm6]	C	T	5.465e^-5	0.893	INTERGENIC
2L	2087400	2L_2087400_SNP [dm3] 2L_2087400_SNP [dm6]	T	A	5.482e^-5	0.893	INTRON dpr3
3R	12452771	3R_12452771_INS [dm3] 3R_16627049_INS [dm6]	C	CAGATGGCTTAGGCAC...	5.504e^-5	0.893	INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2772387	3L_2772387_SNP [dm3] 3L_2772387_SNP [dm6]	A	T	5.505e^-5	0.893	UPSTREAM CG9977 DOWNSTREAM CG12093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	15716284	2R_15716284_SNP [dm3] 2R_19828779_SNP [dm6]	T	C	5.510e^-5	0.893	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8219408	3R_8219408_SNP [dm3] 3R_12393686_SNP [dm6]	G	A	5.570e^-5	0.893	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402
3R	25346528	3R_25346528_SNP [dm3] 3R_29520806_SNP [dm6]	A	G	5.592e^-5	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17086616	2R_17086616_SNP [dm3] 2R_21199111_SNP [dm6]	C	T	5.641e^-5	0.893	SYNONYMOUS_CODING Lapsyn
2R	16125570	2R_16125570_SNP [dm3] 2R_20238065_SNP [dm6]	T	C	5.684e^-5	0.893	DOWNSTREAM CG13869 INTRON CG11099
3L	5897172	3L_5897172_SNP [dm3] 3L_5904072_SNP [dm6]	A	T	5.717e^-5	0.893	UPSTREAM CG32413 DOWNSTREAM CG10486 INTERGENIC
3R	3822839	3R_3822839_SNP [dm3] 3R_7997117_SNP [dm6]	G	C	5.740e^-5	0.893	INTERGENIC
X	6643814	X_6643814_DEL [dm3] X_6749781_DEL [dm6]	ACTCAGAA	A	5.801e^-5	0.893	INTRON CG14439
3R	11721484	3R_11721484_SNP [dm3] 3R_15895762_SNP [dm6]	G	C	5.826e^-5	0.893	UTR_5_PRIME CG14877
2R	7042519	2R_7042519_SNP [dm3] 2R_11155014_SNP [dm6]	A	T	5.852e^-5	0.893	SYNONYMOUS_CODING CG13230 INTRON CG13229
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	5.897e^-5	0.893	DOWNSTREAM CG18109 INTERGENIC
3R	8243520	3R_8243520_SNP [dm3] 3R_12417798_SNP [dm6]	C	T	5.925e^-5	0.893	SYNONYMOUS_CODING pps
3L	6060070	3L_6060070_SNP [dm3] 3L_6066970_SNP [dm6]	C	T	5.968e^-5	0.893	INTRON CG42269
2R	5769907	2R_5769907_SNP [dm3] 2R_9882402_SNP [dm6]	C	T	6.061e^-5	0.893	UPSTREAM Sec24AB DOWNSTREAM CG1513 EXON CR45467	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
X	16803137	X_16803137_SNP [dm3] X_16909104_SNP [dm6]	T	C	6.110e^-5	0.893	INTRON CR44754
3R	21528550	3R_21528550_SNP [dm3] 3R_25702828_SNP [dm6]	T	G	6.125e^-5	0.893	INTRON LpR2
3R	21528444	3R_21528444_SNP [dm3] 3R_25702722_SNP [dm6]	A	G	6.199e^-5	0.893	INTRON LpR2
2L	3195180	2L_3195180_DEL [dm3] 2L_3195180_DEL [dm6]	AT	A	6.240e^-5	0.893	INTRON CG34393
3R	23979214	3R_23979214_SNP [dm3] 3R_28153492_SNP [dm6]	C	T	6.245e^-5	0.893	INTRON CG34354
2R	5784138	2R_5784138_SNP [dm3] 2R_9896633_SNP [dm6]	A	G	6.268e^-5	0.893	NON_SYNONYMOUS_CODING CG30007
3L	833026	3L_833026_INS [dm3] 3L_833026_INS [dm6]	A	AA	6.325e^-5	0.893	UPSTREAM snoRNA:Psi28S-3308 DOWNSTREAM snoRNA:Psi18S-1086 INTRON CG13900	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	15503394	3L_15503394_DEL [dm3] 3L_15510294_DEL [dm6]	CCAAATTTCTTTAAA...	C	6.469e^-5	0.893	UPSTREAM Eip71CD DOWNSTREAM Z600 INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	21528551	3R_21528551_SNP [dm3] 3R_25702829_SNP [dm6]	C	A	6.489e^-5	0.893	INTRON LpR2
2R	16907596	2R_16907596_SNP [dm3] 2R_21020091_SNP [dm6]	G	A	6.555e^-5	0.893	SYNONYMOUS_CODING RIC-3
2L	521483	2L_521483_SNP [dm3] 2L_521483_SNP [dm6]	T	A	6.566e^-5	0.893	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	20515677	2L_20515677_SNP [dm3] 2L_20515677_SNP [dm6]	A	G	6.569e^-5	0.893	INTERGENIC
2R	5790017	2R_5790017_SNP [dm3] 2R_9902512_SNP [dm6]	A	T	6.605e^-5	0.893	INTRON CG1441	TF binding site mE1_TFBS_cad
3L	3947620	3L_3947620_SNP [dm3] 3L_3947620_SNP [dm6]	T	A	6.681e^-5	0.893	UPSTREAM CG10853 DOWNSTREAM CG14982 INTERGENIC
3R	15462287	3R_15462287_SNP [dm3] 3R_19636565_SNP [dm6]	C	T	6.688e^-5	0.893	NON_SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
2R	18568420	2R_18568420_SNP [dm3] 2R_22680915_SNP [dm6]	A	T	6.709e^-5	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	8387304	2L_8387304_SNP [dm3] 2L_8387304_SNP [dm6]	C	T	6.784e^-5	0.893	SYNONYMOUS_CODING CG13384	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3218333	3L_3218333_SNP [dm3] 3L_3218333_SNP [dm6]	C	A	6.795e^-5	0.893	NON_SYNONYMOUS_CODING CG14967 UPSTREAM CG12034	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17370395	2R_17370395_SNP [dm3] 2R_21482890_SNP [dm6]	G	C	6.836e^-5	0.893	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad
2L	581350	2L_581350_SNP [dm3] 2L_581350_SNP [dm6]	C	A	6.903e^-5	0.893	INTERGENIC
3L	6687252	3L_6687252_SNP [dm3] 3L_6694152_SNP [dm6]	C	T	6.932e^-5	0.893	INTRON SP1173
3L	18475744	3L_18475744_SNP [dm3] 3L_18482644_SNP [dm6]	G	A	6.962e^-5	0.893	INTERGENIC
3L	9018981	3L_9018981_SNP [dm3] 3L_9025881_SNP [dm6]	T	G	7.005e^-5	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17366588	X_17366588_DEL [dm3] X_17472555_DEL [dm6]	ACTGCAAA	A	7.010e^-5	0.893	INTRON CG43658
2L	528468	2L_528468_SNP [dm3] 2L_528468_SNP [dm6]	G	C	7.048e^-5	0.893	INTRON ush	regulatory region REDfly_CRMs
2R	5731874	2R_5731874_SNP [dm3] 2R_9844369_SNP [dm6]	C	A	7.192e^-5	0.902	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	20991798	2L_20991798_SNP [dm3] 2L_20991798_SNP [dm6]	C	T	7.249e^-5	0.902	INTRON CG42238
3L	5898150	3L_5898150_SNP [dm3] 3L_5905050_SNP [dm6]	C	A	7.258e^-5	0.902	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486 UPSTREAM CG32413
2R	13920139	2R_13920139_SNP [dm3] 2R_18032634_SNP [dm6]	A	G	7.366e^-5	0.909	INTERGENIC
3L	7760233	3L_7760233_SNP [dm3] 3L_7767133_SNP [dm6]	C	T	7.484e^-5	0.914	DOWNSTREAM CG32371 INTRON Clk
2R	14183979	2R_14183979_SNP [dm3] 2R_18296474_SNP [dm6]	G	C	7.504e^-5	0.914	SYNONYMOUS_CODING CG18537 UPSTREAM CG18538 DOWNSTREAM CG18536 INTRON sbb
2R	19108209	2R_19108209_SNP [dm3] 2R_23220686_SNP [dm6]	T	G	7.715e^-5	0.934	INTERGENIC
2R	8610599	2R_8610599_DEL [dm3] 2R_12723094_DEL [dm6]	GTTGTT	G	7.900e^-5	0.936	INTRON CG42663
2R	6333756	2R_6333756_SNP [dm3] 2R_10446251_SNP [dm6]	C	T	7.953e^-5	0.936	INTRON Galphao
2R	5735181	2R_5735181_SNP [dm3] 2R_9847676_SNP [dm6]	T	G	7.963e^-5	0.936	UPSTREAM CG1671 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	17785075	3R_17785075_SNP [dm3] 3R_21959353_SNP [dm6]	C	G	8.004e^-5	0.936	INTRON Eip93F
2R	13350610	2R_13350610_SNP [dm3] 2R_17463105_SNP [dm6]	A	G	8.015e^-5	0.936	SYNONYMOUS_CODING CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	5763531	2R_5763531_SNP [dm3] 2R_9876026_SNP [dm6]	C	T	8.032e^-5	0.936	SYNONYMOUS_CODING CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5898396	3L_5898396_SNP [dm3] 3L_5905296_SNP [dm6]	T	A	8.149e^-5	0.937	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486
2R	18978593	2R_18978593_SNP [dm3] 2R_23091070_SNP [dm6]	T	G	8.210e^-5	0.937	SYNONYMOUS_CODING CG9876	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	5768415	2R_5768415_SNP [dm3] 2R_9880910_SNP [dm6]	G	C	8.244e^-5	0.937	NON_SYNONYMOUS_CODING Sec24AB UPSTREAM CR45467	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16119064	2R_16119064_INS [dm3] 2R_20231559_INS [dm6]	A	GTGGAGAATACCTACAC...	8.245e^-5	0.937	UPSTREAM CG11044 INTERGENIC
2R	13380164	2R_13380164_SNP [dm3] 2R_17492659_SNP [dm6]	G	C	8.313e^-5	0.937	SYNONYMOUS_CODING NT5E-2
2L	3670190	2L_3670190_SNP [dm3] 2L_3670190_SNP [dm6]	C	G	8.344e^-5	0.937	SYNONYMOUS_CODING Sfp24Bc UPSTREAM Sfp24Bb INTRON CG34340
3L	15766748	3L_15766748_SNP [dm3] 3L_15773648_SNP [dm6]	A	T	8.506e^-5	0.945	INTERGENIC
3R	17395485	3R_17395485_SNP [dm3] 3R_21569763_SNP [dm6]	C	T	8.518e^-5	0.945	UPSTREAM CG15498 DOWNSTREAM InR INTERGENIC
2R	5767380	2R_5767380_SNP [dm3] 2R_9879875_SNP [dm6]	A	G	8.563e^-5	0.945	SYNONYMOUS_CODING Sec24AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	8376324	2L_8376324_SNP [dm3] 2L_8376324_SNP [dm6]	C	T	8.647e^-5	0.946	SYNONYMOUS_CODING CG13390 UPSTREAM CG17294 DOWNSTREAM Wdr82	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	1817995	2R_1817995_SNP [dm3] 2R_5930490_SNP [dm6]	A	C	8.803e^-5	0.946	SYNONYMOUS_CODING CG43366
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	8.857e^-5	0.946	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
2R	5768841	2R_5768841_SNP [dm3] 2R_9881336_SNP [dm6]	G	T	8.863e^-5	0.946	UPSTREAM CR45467 INTRON Sec24AB	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
X	9472707	X_9472707_SNP [dm3] X_9578674_SNP [dm6]	A	G	8.946e^-5	0.946	INTRON CG32699	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	20517892	2L_20517892_SNP [dm3] 2L_20517892_SNP [dm6]	G	A	8.983e^-5	0.946	INTERGENIC
3R	8128028	3R_8128028_SNP [dm3] 3R_12302306_SNP [dm6]	T	C	9.046e^-5	0.946	UTR_3_PRIME svp
3R	26916866	3R_26916866_SNP [dm3] 3R_31091144_SNP [dm6]	G	T	9.067e^-5	0.946	UTR_3_PRIME CG11317
3L	5063325	3L_5063325_SNP [dm3] 3L_5063325_SNP [dm6]	T	C	9.130e^-5	0.946	INTRON Con
2L	797849	2L_797849_SNP [dm3] 2L_797849_SNP [dm6]	T	C	9.181e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5734458	2R_5734458_SNP [dm3] 2R_9846953_SNP [dm6]	T	G	9.224e^-5	0.946	UPSTREAM Orc6 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15461970	3R_15461970_SNP [dm3] 3R_19636248_SNP [dm6]	G	A	9.260e^-5	0.946	DOWNSTREAM CG34138 INTRON subdued
3L	8672749	3L_8672749_SNP [dm3] 3L_8679649_SNP [dm6]	G	A	9.283e^-5	0.946	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	19214550	3R_19214550_SNP [dm3] 3R_23388828_SNP [dm6]	A	G	9.297e^-5	0.946	NON_SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12753808	2L_12753808_SNP [dm3] 2L_12753808_SNP [dm6]	A	G	9.418e^-5	0.946	INTERGENIC
2L	793525	2L_793525_SNP [dm3] 2L_793525_SNP [dm6]	C	T	9.429e^-5	0.946	INTERGENIC
2L	4516487	2L_4516487_SNP [dm3] 2L_4516487_SNP [dm6]	G	C	9.643e^-5	0.946	NON_SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	5762331	2R_5762331_SNP [dm3] 2R_9874826_SNP [dm6]	C	G	9.780e^-5	0.946	UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12589322	3L_12589322_SNP [dm3] 3L_12596222_SNP [dm6]	C	T	9.933e^-5	0.946	DOWNSTREAM ara INTERGENIC
2L	11348426	2L_11348426_SNP [dm3] 2L_11348426_SNP [dm6]	T	A	9.950e^-5	0.946	INTERGENIC
3L	12095031	3L_12095031_SNP [dm3] 3L_12101931_SNP [dm6]	A	C	1.001e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	15198537	2R_15198537_MNP [dm3] 2R_19311032_MNP [dm6]	TGA	ACT	1.009e^-4	0.946	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
3L	11584533	3L_11584533_SNP [dm3] 3L_11591433_SNP [dm6]	C	T	1.009e^-4	0.946	UPSTREAM CG33268 INTERGENIC
2R	10544454	2R_10544454_SNP [dm3] 2R_14656949_SNP [dm6]	T	C	1.021e^-4	0.946	NON_SYNONYMOUS_CODING Adgf-E
3R	15461973	3R_15461973_SNP [dm3] 3R_19636251_SNP [dm6]	A	G	1.021e^-4	0.946	DOWNSTREAM CG34138 INTRON subdued
2R	827295	2R_827295_SNP [dm3] 2R_4939790_SNP [dm6]	G	T	1.023e^-4	0.946	INTRON Ir41a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17366651	X_17366651_SNP [dm3] X_17472618_SNP [dm6]	G	A	1.037e^-4	0.946	INTRON CG43658
X	9472697	X_9472697_SNP [dm3] X_9578664_SNP [dm6]	T	G	1.040e^-4	0.946	INTRON CG32699	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	14324624	2L_14324624_SNP [dm3] 2L_14324624_SNP [dm6]	G	A	1.046e^-4	0.946	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
3L	16010431	3L_16010431_SNP [dm3] 3L_16017331_SNP [dm6]	T	A	1.046e^-4	0.946	EXON CR43950	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14994122	2R_14994122_SNP [dm3] 2R_19106617_SNP [dm6]	A	C	1.050e^-4	0.946	INTRON 5-HT1A
3R	10819804	3R_10819804_SNP [dm3] 3R_14994082_SNP [dm6]	G	A	1.056e^-4	0.946	INTERGENIC
2R	5768832	2R_5768832_SNP [dm3] 2R_9881327_SNP [dm6]	G	T	1.060e^-4	0.946	UPSTREAM CR45467 INTRON Sec24AB	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3R	15461953	3R_15461953_SNP [dm3] 3R_19636231_SNP [dm6]	T	A	1.074e^-4	0.946	DOWNSTREAM CG34138 INTRON subdued
2R	15198558	2R_15198558_SNP [dm3] 2R_19311053_SNP [dm6]	T	A	1.085e^-4	0.946	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
X	8553347	X_8553347_SNP [dm3] X_8659314_SNP [dm6]	G	A	1.111e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	11976657	2R_11976657_SNP [dm3] 2R_16089152_SNP [dm6]	C	T	1.111e^-4	0.946	SYNONYMOUS_CODING Dg
2R	13919968	2R_13919968_SNP [dm3] 2R_18032463_SNP [dm6]	G	A	1.127e^-4	0.946	INTERGENIC
2R	13919973	2R_13919973_SNP [dm3] 2R_18032468_SNP [dm6]	G	A	1.127e^-4	0.946	INTERGENIC
2R	14216307	2R_14216307_SNP [dm3] 2R_18328802_SNP [dm6]	G	A	1.137e^-4	0.946	INTRON sbb
2R	13878906	2R_13878906_SNP [dm3] 2R_17991401_SNP [dm6]	G	A	1.137e^-4	0.946	INTRON dpr13	TF binding site mE1_TFBS_chinmo
2R	7276983	2R_7276983_SNP [dm3] 2R_11389478_SNP [dm6]	T	C	1.142e^-4	0.946	UPSTREAM CG30022 INTRON sprt
X	8553345	X_8553345_SNP [dm3] X_8659312_SNP [dm6]	A	T	1.145e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	16868214	X_16868214_SNP [dm3] X_16974181_SNP [dm6]	T	C	1.148e^-4	0.946	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	20528894	2L_20528894_DEL [dm3] 2L_20528894_DEL [dm6]	CTTTTGAC	C	1.148e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13988043	2L_13988043_SNP [dm3] 2L_13988043_SNP [dm6]	G	C	1.151e^-4	0.946	INTRON rk
2R	5760716	2R_5760716_SNP [dm3] 2R_9873211_SNP [dm6]	C	T	1.155e^-4	0.946	INTRON cbx & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_sens
3R	8419505	3R_8419505_SNP [dm3] 3R_12593783_SNP [dm6]	G	A	1.155e^-4	0.946	START_GAINED Octbeta2R UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2L	759812	2L_759812_SNP [dm3] 2L_759812_SNP [dm6]	C	T	1.162e^-4	0.946	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3
3R	17831035	3R_17831035_SNP [dm3] 3R_22005313_SNP [dm6]	C	T	1.162e^-4	0.946	SYNONYMOUS_CODING Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15461964	3R_15461964_SNP [dm3] 3R_19636242_SNP [dm6]	T	A	1.167e^-4	0.946	DOWNSTREAM CG34138 INTRON subdued
2R	12488137	2R_12488137_SNP [dm3] 2R_16600632_SNP [dm6]	T	A	1.167e^-4	0.946	DOWNSTREAM CG5089 INTRON CG8303
2R	14116338	2R_14116338_SNP [dm3] 2R_18228833_SNP [dm6]	C	T	1.171e^-4	0.946	DOWNSTREAM CR45310 EXON CR45311
2R	5784104	2R_5784104_SNP [dm3] 2R_9896599_SNP [dm6]	C	T	1.172e^-4	0.946	SYNONYMOUS_CODING CG30007
3L	5610561	3L_5610561_SNP [dm3] 3L_5617461_SNP [dm6]	G	T	1.173e^-4	0.946	INTERGENIC
2L	528469	2L_528469_SNP [dm3] 2L_528469_SNP [dm6]	G	T	1.176e^-4	0.946	INTRON ush	regulatory region REDfly_CRMs
2L	10111671	2L_10111671_SNP [dm3] 2L_10111671_SNP [dm6]	T	C	1.181e^-4	0.946	INTRON CG44153 & 1 other
2R	15967118	2R_15967118_SNP [dm3] 2R_20079613_SNP [dm6]	G	A	1.181e^-4	0.946	INTERGENIC
2L	20526252	2L_20526252_SNP [dm3] 2L_20526252_SNP [dm6]	C	A	1.183e^-4	0.946	INTERGENIC
3L	5382326	3L_5382326_INS [dm3] 3L_5389226_INS [dm6]	C	CGCTGTAATGC...	1.186e^-4	0.946	INTERGENIC
3R	17635220	3R_17635220_SNP [dm3] 3R_21809498_SNP [dm6]	C	T	1.194e^-4	0.946	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5785156	2R_5785156_SNP [dm3] 2R_9897651_SNP [dm6]	T	A	1.196e^-4	0.946	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
3R	15461974	3R_15461974_SNP [dm3] 3R_19636252_SNP [dm6]	A	T	1.203e^-4	0.946	DOWNSTREAM CG34138 INTRON subdued
2L	17029792	2L_17029792_SNP [dm3] 2L_17029792_SNP [dm6]	T	C	1.204e^-4	0.946	INTERGENIC
2L	4734370	2L_4734370_SNP [dm3] 2L_4734370_SNP [dm6]	G	T	1.219e^-4	0.946	NON_SYNONYMOUS_CODING CG15631 UTR_5_PRIME CG15631 DOWNSTREAM CG15630
2L	17029660	2L_17029660_SNP [dm3] 2L_17029660_SNP [dm6]	A	C	1.220e^-4	0.946	INTERGENIC
2R	17817933	2R_17817933_SNP [dm3] 2R_21930428_SNP [dm6]	C	T	1.228e^-4	0.946	INTRON Fili
3R	25906300	3R_25906300_SNP [dm3] 3R_30080578_SNP [dm6]	T	A	1.231e^-4	0.946	INTRON sima
2L	15086296	2L_15086296_SNP [dm3] 2L_15086296_SNP [dm6]	G	A	1.232e^-4	0.946	INTRON CG15270
3R	25850771	3R_25850771_SNP [dm3] 3R_30025049_SNP [dm6]	T	G	1.234e^-4	0.946	INTRON Axn
2L	9532134	2L_9532134_SNP [dm3] 2L_9532134_SNP [dm6]	T	A	1.235e^-4	0.946	INTRON Oatp30B	TF binding site mE1_TFBS_sens
3L	5382313	3L_5382313_SNP [dm3] 3L_5389213_SNP [dm6]	A	T	1.243e^-4	0.946	INTERGENIC
3L	5382507	3L_5382507_SNP [dm3] 3L_5389407_SNP [dm6]	G	A	1.243e^-4	0.946	INTERGENIC
2R	14677379	2R_14677379_SNP [dm3] 2R_18789874_SNP [dm6]	T	C	1.253e^-4	0.946	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
2R	16127177	2R_16127177_SNP [dm3] 2R_20239672_SNP [dm6]	G	C	1.253e^-4	0.946	UPSTREAM Efhc1.2 & 1 other DOWNSTREAM CG11099 INTERGENIC
X	9472691	X_9472691_SNP [dm3] X_9578658_SNP [dm6]	C	T	1.255e^-4	0.946	INTRON CG32699	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	1032865	3L_1032865_SNP [dm3] 3L_1032865_SNP [dm6]	A	T	1.259e^-4	0.946	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26174433	3R_26174433_DEL [dm3] 3R_30348711_DEL [dm6]	CGGCGGGAGTTTGC...	C	1.259e^-4	0.946	INTRON hdc
3L	5904291	3L_5904291_INS [dm3] 3L_5911191_INS [dm6]	T	TATGT	1.261e^-4	0.946	INTRON CG13288
2R	18400513	2R_18400513_SNP [dm3] 2R_22513008_SNP [dm6]	T	G	1.276e^-4	0.946	UTR_5_PRIME px INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	1.277e^-4	0.946	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	15462650	3R_15462650_SNP [dm3] 3R_19636928_SNP [dm6]	A	C	1.279e^-4	0.946	SYNONYMOUS_CODING subdued
2L	20517886	2L_20517886_INS [dm3] 2L_20517886_INS [dm6]	G	GCATGG	1.287e^-4	0.946	INTERGENIC
2R	4901995	2R_4901995_SNP [dm3] 2R_9014490_SNP [dm6]	C	T	1.295e^-4	0.946	UTR_3_PRIME CG13744 UPSTREAM CG8172
X	17670550	X_17670550_SNP [dm3] X_17776517_SNP [dm6]	T	C	1.301e^-4	0.946	SYNONYMOUS_CODING unc-4 UTR_3_PRIME unc-4
2R	6984836	2R_6984836_SNP [dm3] 2R_11097331_SNP [dm6]	A	G	1.309e^-4	0.946	INTRON luna
2R	5028929	2R_5028929_SNP [dm3] 2R_9141424_SNP [dm6]	T	G	1.325e^-4	0.946	DOWNSTREAM shrb INTRON CG8788 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22696172	3R_22696172_SNP [dm3] 3R_26870450_SNP [dm6]	A	G	1.327e^-4	0.946	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	12384350	3L_12384350_SNP [dm3] 3L_12391250_SNP [dm6]	G	T	1.329e^-4	0.946	UTR_5_PRIME Ncc69 INTRON Ncc69	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9163891	3R_9163891_DEL [dm3] 3R_13338169_DEL [dm6]	TATTATAAAAT...	T	1.333e^-4	0.946	UPSTREAM PK2-R1 INTERGENIC
3R	25067910	3R_25067910_SNP [dm3] 3R_29242188_SNP [dm6]	G	A	1.333e^-4	0.946	SPLICE_SITE_REGION CG31445 INTRON CG31445	TF binding site mE1_TFBS_sens
3R	22696155	3R_22696155_SNP [dm3] 3R_26870433_SNP [dm6]	T	A	1.338e^-4	0.946	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12644176	2L_12644176_SNP [dm3] 2L_12644176_SNP [dm6]	C	A	1.346e^-4	0.946	INTRON Ref2
2L	20517917	2L_20517917_DEL [dm3] 2L_20517917_DEL [dm6]	ATGCT	A	1.348e^-4	0.946	INTERGENIC
3L	9018978	3L_9018978_DEL [dm3] 3L_9025878_DEL [dm6]	TC	T	1.348e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8358461	2L_8358461_SNP [dm3] 2L_8358461_SNP [dm6]	C	G	1.348e^-4	0.946	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_twi
2R	18346786	2R_18346786_SNP [dm3] 2R_22459281_SNP [dm6]	T	A	1.359e^-4	0.946	INTRON CG10384
3R	11721534	3R_11721534_SNP [dm3] 3R_15895812_SNP [dm6]	G	A	1.367e^-4	0.946	START_GAINED CG14877 UTR_5_PRIME CG14877
2L	19269281	2L_19269281_SNP [dm3] 2L_19269281_SNP [dm6]	G	A	1.385e^-4	0.946	EXON CR44190
2L	12754111	2L_12754111_DEL [dm3] 2L_12754111_DEL [dm6]	TT	T	1.391e^-4	0.946	INTERGENIC
3R	26174412	3R_26174412_SNP [dm3] 3R_30348690_SNP [dm6]	C	T	1.395e^-4	0.946	INTRON hdc
3R	26043807	3R_26043807_SNP [dm3] 3R_30218085_SNP [dm6]	G	T	1.396e^-4	0.946	INTERGENIC
2R	4902243	2R_4902243_SNP [dm3] 2R_9014738_SNP [dm6]	A	T	1.396e^-4	0.946	SPLICE_SITE_REGION CG13744 INTRON CG13744
2L	15245948	2L_15245948_SNP [dm3] 2L_15245948_SNP [dm6]	T	C	1.399e^-4	0.946	UTR_5_PRIME ZnT35C INTRON ZnT35C
2L	7512984	2L_7512984_SNP [dm3] 2L_7512984_SNP [dm6]	C	T	1.404e^-4	0.946	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	17414915	3R_17414915_SNP [dm3] 3R_21589193_SNP [dm6]	A	T	1.411e^-4	0.946	INTRON InR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26174415	3R_26174415_SNP [dm3] 3R_30348693_SNP [dm6]	G	C	1.422e^-4	0.946	INTRON hdc
X	3178046	X_3178046_SNP [dm3] X_3284013_SNP [dm6]	C	A	1.437e^-4	0.946	INTRON dnc
2R	14116315	2R_14116315_SNP [dm3] 2R_18228810_SNP [dm6]	C	T	1.438e^-4	0.946	DOWNSTREAM CR45310 EXON CR45311
2L	73216	2L_73216_DEL [dm3] 2L_73216_DEL [dm6]	AA	A	1.440e^-4	0.946	UPSTREAM galectin INTRON galectin EXON CR44987	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1642230	2R_1642230_SNP [dm3] 2R_5754725_SNP [dm6]	C	T	1.442e^-4	0.946	NON_SYNONYMOUS_CODING l_2_09851	TF binding site mE1_TFBS_cad
2L	4778490	2L_4778490_SNP [dm3] 2L_4778490_SNP [dm6]	G	C	1.444e^-4	0.946	INTRON CG15630
2R	5731251	2R_5731251_SNP [dm3] 2R_9843746_SNP [dm6]	C	T	1.444e^-4	0.946	START_GAINED CG1667 UTR_5_PRIME CG1667 UPSTREAM CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	14279266	2L_14279266_SNP [dm3] 2L_14279266_SNP [dm6]	C	T	1.455e^-4	0.946	INTRON wb
3R	26174416	3R_26174416_INS [dm3] 3R_30348694_INS [dm6]	T	TCTT	1.456e^-4	0.946	INTRON hdc
3R	26152884	3R_26152884_SNP [dm3] 3R_30327162_SNP [dm6]	C	T	1.458e^-4	0.946	INTRON hdc
2L	7801422	2L_7801422_SNP [dm3] 2L_7801422_SNP [dm6]	C	T	1.472e^-4	0.946	NON_SYNONYMOUS_CODING r2d2 DOWNSTREAM cdc14
X	14275627	X_14275627_SNP [dm3] X_14381594_SNP [dm6]	C	A	1.477e^-4	0.946	DOWNSTREAM betaNACtes4 INTRON dpr8
2L	7802306	2L_7802306_SNP [dm3] 2L_7802306_SNP [dm6]	G	A	1.481e^-4	0.946	UTR_3_PRIME cdc14 DOWNSTREAM cdc14 & 1 other
3R	22895481	3R_22895481_INS [dm3] 3R_27069759_INS [dm6]	T	TGGCT	1.492e^-4	0.946	UTR_5_PRIME spz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16281294	2R_16281294_SNP [dm3] 2R_20393789_SNP [dm6]	G	A	1.496e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26174414	3R_26174414_SNP [dm3] 3R_30348692_SNP [dm6]	G	T	1.496e^-4	0.946	INTRON hdc
X	14841415	X_14841415_SNP [dm3] X_14947382_SNP [dm6]	T	A	1.501e^-4	0.946	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24893367	3R_24893367_SNP [dm3] 3R_29067645_SNP [dm6]	T	C	1.516e^-4	0.946	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8845238	2L_8845238_SNP [dm3] 2L_8845238_SNP [dm6]	C	T	1.520e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	1708624	2R_1708624_SNP [dm3] 2R_5821119_SNP [dm6]	T	A	1.528e^-4	0.946	INTRON dpr12	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3093771	2L_3093771_SNP [dm3] 2L_3093771_SNP [dm6]	A	T	1.531e^-4	0.946	INTRON toc
3L	9094839	3L_9094839_SNP [dm3] 3L_9101739_SNP [dm6]	A	G	1.547e^-4	0.946	UTR_3_PRIME bol
2L	2540544	2L_2540544_SNP [dm3] 2L_2540544_SNP [dm6]	T	C	1.550e^-4	0.946	INTERGENIC
3L	8918776	3L_8918776_SNP [dm3] 3L_8925676_SNP [dm6]	T	C	1.553e^-4	0.946	INTRON Tsp66E
2R	15967124	2R_15967124_SNP [dm3] 2R_20079619_SNP [dm6]	T	A	1.558e^-4	0.946	INTERGENIC
2L	807280	2L_807280_SNP [dm3] 2L_807280_SNP [dm6]	C	T	1.559e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	859085	2L_859085_SNP [dm3] 2L_859085_SNP [dm6]	G	A	1.559e^-4	0.946	INTERGENIC
3L	18277435	3L_18277435_SNP [dm3] 3L_18284335_SNP [dm6]	T	C	1.577e^-4	0.946	INTERGENIC
2R	8736471	2R_8736471_SNP [dm3] 2R_12848966_SNP [dm6]	C	G	1.580e^-4	0.946	UTR_5_PRIME CG30486 UPSTREAM antr DOWNSTREAM CG17574 EXON CR45468
3R	15462327	3R_15462327_SNP [dm3] 3R_19636605_SNP [dm6]	T	G	1.581e^-4	0.946	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
2L	15217794	2L_15217794_SNP [dm3] 2L_15217794_SNP [dm6]	T	C	1.584e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13885114	2R_13885114_SNP [dm3] 2R_17997609_SNP [dm6]	T	C	1.605e^-4	0.946	INTRON dpr13
2L	8376522	2L_8376522_SNP [dm3] 2L_8376522_SNP [dm6]	G	T	1.606e^-4	0.946	SYNONYMOUS_CODING CG13390 UPSTREAM CG17294 DOWNSTREAM Wdr82	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17042161	2L_17042161_SNP [dm3] 2L_17042161_SNP [dm6]	T	C	1.606e^-4	0.946	DOWNSTREAM CR43802 INTERGENIC
2L	2087403	2L_2087403_SNP [dm3] 2L_2087403_SNP [dm6]	A	T	1.624e^-4	0.946	INTRON dpr3
2L	3670188	2L_3670188_SNP [dm3] 2L_3670188_SNP [dm6]	C	T	1.626e^-4	0.946	NON_SYNONYMOUS_CODING Sfp24Bc UPSTREAM Sfp24Bb INTRON CG34340
3R	26174409	3R_26174409_SNP [dm3] 3R_30348687_SNP [dm6]	T	C	1.627e^-4	0.946	INTRON hdc
X	11554952	X_11554952_DEL [dm3] X_11660919_DEL [dm6]	CTTTATTATGTGTATTTCGA...	C	1.629e^-4	0.946	INTRON Ptp10D
X	6520727	X_6520727_SNP [dm3] X_6626694_SNP [dm6]	T	A	1.630e^-4	0.946	INTRON pigs
2R	15410460	2R_15410460_SNP [dm3] 2R_19522955_SNP [dm6]	G	A	1.636e^-4	0.946	UTR_3_PRIME sm DOWNSTREAM sm
3R	23237682	3R_23237682_SNP [dm3] 3R_27411960_SNP [dm6]	T	C	1.643e^-4	0.946	INTRON side
3L	14174626	3L_14174626_SNP [dm3] 3L_14181526_SNP [dm6]	T	C	1.645e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	790944	2L_790944_SNP [dm3] 2L_790944_SNP [dm6]	G	A	1.661e^-4	0.946	UPSTREAM Pkg21D INTERGENIC	TF binding site mE1_TFBS_cad
X	14687837	X_14687837_SNP [dm3] X_14793804_SNP [dm6]	G	A	1.662e^-4	0.946	SYNONYMOUS_CODING rut	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	835519	2L_835519_SNP [dm3] 2L_835519_SNP [dm6]	G	A	1.663e^-4	0.946	SYNONYMOUS_CODING drongo
3R	21200905	3R_21200905_SNP [dm3] 3R_25375183_SNP [dm6]	T	C	1.665e^-4	0.946	INTRON Fur1
3R	17083378	3R_17083378_SNP [dm3] 3R_21257656_SNP [dm6]	A	G	1.672e^-4	0.946	INTRON ETHR
2L	14265898	2L_14265898_SNP [dm3] 2L_14265898_SNP [dm6]	T	G	1.687e^-4	0.946	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	24848600	3R_24848600_SNP [dm3] 3R_29022878_SNP [dm6]	T	G	1.690e^-4	0.946	UPSTREAM CR44264 EXON CR45567
2R	13380287	2R_13380287_SNP [dm3] 2R_17492782_SNP [dm6]	A	G	1.692e^-4	0.946	SYNONYMOUS_CODING NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_HSA
2R	6981903	2R_6981903_SNP [dm3] 2R_11094398_SNP [dm6]	T	G	1.706e^-4	0.946	INTRON luna	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	24848601	3R_24848601_SNP [dm3] 3R_29022879_SNP [dm6]	T	G	1.709e^-4	0.946	UPSTREAM CR44264 EXON CR45567
X	16539823	X_16539823_DEL [dm3] X_16645790_DEL [dm6]	GTGGAAATCTGAAATTG...	G	1.729e^-4	0.946	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	5777100	2R_5777100_SNP [dm3] 2R_9889595_SNP [dm6]	G	C	1.746e^-4	0.946	UPSTREAM CG30008 DOWNSTREAM CG12923 INTRON CG1513
2R	15716437	2R_15716437_SNP [dm3] 2R_19828932_SNP [dm6]	A	G	1.755e^-4	0.946	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13554673	2R_13554673_SNP [dm3] 2R_17667168_SNP [dm6]	C	T	1.759e^-4	0.946	NON_SYNONYMOUS_CODING eIF3-S8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9933896	X_9933896_SNP [dm3] X_10039863_SNP [dm6]	G	A	1.765e^-4	0.946	SYNONYMOUS_CODING Cht6 INTRON Cht6
3R	24755826	3R_24755826_SNP [dm3] 3R_28930104_SNP [dm6]	C	G	1.769e^-4	0.946	INTRON CG14521
2L	2087373	2L_2087373_SNP [dm3] 2L_2087373_SNP [dm6]	A	G	1.771e^-4	0.946	INTRON dpr3
3R	21200941	3R_21200941_SNP [dm3] 3R_25375219_SNP [dm6]	A	C	1.778e^-4	0.946	INTRON Fur1
2L	1578529	2L_1578529_SNP [dm3] 2L_1578529_SNP [dm6]	A	G	1.779e^-4	0.946	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15032262	2L_15032262_SNP [dm3] 2L_15032262_SNP [dm6]	T	A	1.789e^-4	0.946	UPSTREAM CG31832 INTRON GABA-B-R1
2R	13535091	2R_13535091_SNP [dm3] 2R_17647586_SNP [dm6]	A	C	1.789e^-4	0.946	NON_SYNONYMOUS_CODING CCHa1-R
2L	20517916	2L_20517916_SNP [dm3] 2L_20517916_SNP [dm6]	C	A	1.797e^-4	0.946	INTERGENIC
2L	8374844	2L_8374844_SNP [dm3] 2L_8374844_SNP [dm6]	C	T	1.797e^-4	0.946	SYNONYMOUS_CODING Wdr82 DOWNSTREAM CG17292 & 1 other	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	5784731	2R_5784731_SNP [dm3] 2R_9897226_SNP [dm6]	C	A	1.797e^-4	0.946	NON_SYNONYMOUS_CODING CG30007
2R	13917272	2R_13917272_SNP [dm3] 2R_18029767_SNP [dm6]	C	T	1.800e^-4	0.946	INTERGENIC
2L	19851486	2L_19851486_SNP [dm3] 2L_19851486_SNP [dm6]	G	T	1.805e^-4	0.946	INTRON sick
2R	19687186	2R_19687186_SNP [dm3] 2R_23799663_SNP [dm6]	A	C	1.808e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	803430	2L_803430_SNP [dm3] 2L_803430_SNP [dm6]	T	G	1.809e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	811963	2L_811963_SNP [dm3] 2L_811963_SNP [dm6]	A	G	1.809e^-4	0.946	NON_SYNONYMOUS_CODING Dbp21E2 DOWNSTREAM Nnf1b	TF binding site mE1_TFBS_sens
2L	831521	2L_831521_SNP [dm3] 2L_831521_SNP [dm6]	G	A	1.809e^-4	0.946	SYNONYMOUS_CODING dock	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	837907	2L_837907_SNP [dm3] 2L_837907_SNP [dm6]	C	G	1.809e^-4	0.946	INTRON drongo	TF binding site mE1_TFBS_cad
2L	761992	2L_761992_SNP [dm3] 2L_761992_SNP [dm6]	C	T	1.815e^-4	0.946	UTR_3_PRIME GABA-B-R3
2L	14030307	2L_14030307_SNP [dm3] 2L_14030307_SNP [dm6]	G	C	1.823e^-4	0.946	NON_SYNONYMOUS_CODING CG18095 DOWNSTREAM CG4500
2R	1740253	2R_1740253_SNP [dm3] 2R_5852748_SNP [dm6]	G	T	1.828e^-4	0.946	INTRON dpr12
3L	12050044	3L_12050044_SNP [dm3] 3L_12056944_SNP [dm6]	A	G	1.837e^-4	0.946	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14870699	2R_14870699_SNP [dm3] 2R_18983194_SNP [dm6]	G	T	1.843e^-4	0.946	INTERGENIC
2L	17029700	2L_17029700_SNP [dm3] 2L_17029700_SNP [dm6]	A	T	1.844e^-4	0.946	INTERGENIC
3L	3987713	3L_3987713_SNP [dm3] 3L_3987713_SNP [dm6]	C	T	1.849e^-4	0.946	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13817414	3R_13817414_SNP [dm3] 3R_17991692_SNP [dm6]	C	T	1.850e^-4	0.946	INTRON cpo
2L	790911	2L_790911_SNP [dm3] 2L_790911_SNP [dm6]	G	T	1.867e^-4	0.946	UPSTREAM Pkg21D INTERGENIC	TF binding site mE1_TFBS_cad
2L	799655	2L_799655_SNP [dm3] 2L_799655_SNP [dm6]	T	G	1.867e^-4	0.946	UPSTREAM CR45259 INTERGENIC
2L	803734	2L_803734_SNP [dm3] 2L_803734_SNP [dm6]	G	A	1.867e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	808201	2L_808201_SNP [dm3] 2L_808201_SNP [dm6]	C	A	1.867e^-4	0.946	INTERGENIC
2L	834596	2L_834596_SNP [dm3] 2L_834596_SNP [dm6]	A	G	1.867e^-4	0.946	DOWNSTREAM drongo INTRON drongo
2L	2087437	2L_2087437_SNP [dm3] 2L_2087437_SNP [dm6]	G	A	1.874e^-4	0.946	INTRON dpr3
2R	11019374	2R_11019374_SNP [dm3] 2R_15131869_SNP [dm6]	A	C	1.881e^-4	0.946	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2853763	2L_2853763_SNP [dm3] 2L_2853763_SNP [dm6]	G	T	1.883e^-4	0.946	INTRON CG3104
2R	5771199	2R_5771199_SNP [dm3] 2R_9883694_SNP [dm6]	C	T	1.887e^-4	0.946	UTR_3_PRIME CG1513
2L	643386	2L_643386_SNP [dm3] 2L_643386_SNP [dm6]	G	A	1.889e^-4	0.946	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14265182	2L_14265182_SNP [dm3] 2L_14265182_SNP [dm6]	T	G	1.904e^-4	0.946	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	12009458	3R_12009458_SNP [dm3] 3R_16183736_SNP [dm6]	T	C	1.906e^-4	0.946	INTRON CG8927
3R	12009511	3R_12009511_SNP [dm3] 3R_16183789_SNP [dm6]	A	C	1.906e^-4	0.946	INTRON CG8927
3R	12009553	3R_12009553_SNP [dm3] 3R_16183831_SNP [dm6]	C	T	1.906e^-4	0.946	INTRON CG8927
2R	5731291	2R_5731291_SNP [dm3] 2R_9843786_SNP [dm6]	C	T	1.913e^-4	0.946	UTR_5_PRIME CG1667 UPSTREAM CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	11524949	3L_11524949_SNP [dm3] 3L_11531849_SNP [dm6]	T	C	1.915e^-4	0.946	INTRON Mob2
3R	14849776	3R_14849776_SNP [dm3] 3R_19024054_SNP [dm6]	T	C	1.923e^-4	0.946	UPSTREAM CG14286 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14256773	2L_14256773_SNP [dm3] 2L_14256773_SNP [dm6]	C	A	1.930e^-4	0.946	INTERGENIC
3R	19219943	3R_19219943_SNP [dm3] 3R_23394221_SNP [dm6]	T	C	1.932e^-4	0.946	INTERGENIC
3R	22696118	3R_22696118_SNP [dm3] 3R_26870396_SNP [dm6]	T	C	1.935e^-4	0.946	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	2769488	X_2769488_SNP [dm3] X_2875455_SNP [dm6]	C	T	1.937e^-4	0.946	UTR_3_PRIME CG14417 INTRON kirre
2L	14267723	2L_14267723_SNP [dm3] 2L_14267723_SNP [dm6]	T	C	1.941e^-4	0.946	INTRON wb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	14771492	3R_14771492_SNP [dm3] 3R_18945770_SNP [dm6]	G	A	1.942e^-4	0.946	INTRON CG42613
3L	4043043	3L_4043043_SNP [dm3] 3L_4043043_SNP [dm6]	T	C	1.951e^-4	0.946	DOWNSTREAM Rcd5 INTERGENIC
3L	2404847	3L_2404847_SNP [dm3] 3L_2404847_SNP [dm6]	C	T	1.952e^-4	0.946	NON_SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_sens
3L	7451180	3L_7451180_SNP [dm3] 3L_7458080_SNP [dm6]	A	G	1.958e^-4	0.946	INTRON ppk26
2L	10152859	2L_10152859_SNP [dm3] 2L_10152859_SNP [dm6]	C	A	1.959e^-4	0.946	INTRON CG44153 & 1 other
2R	16172875	2R_16172875_SNP [dm3] 2R_20285370_SNP [dm6]	A	G	1.967e^-4	0.946	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
2L	757788	2L_757788_SNP [dm3] 2L_757788_SNP [dm6]	C	T	1.969e^-4	0.946	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3
3L	10516565	3L_10516565_SNP [dm3] 3L_10523465_SNP [dm6]	C	A	1.978e^-4	0.946	INTRON A2bp1
2L	5429431	2L_5429431_SNP [dm3] 2L_5429431_SNP [dm6]	A	T	1.982e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8154716	3R_8154716_SNP [dm3] 3R_12328994_SNP [dm6]	G	A	1.985e^-4	0.946	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
2L	14265906	2L_14265906_SNP [dm3] 2L_14265906_SNP [dm6]	T	C	1.986e^-4	0.946	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	15031511	2R_15031511_SNP [dm3] 2R_19144006_SNP [dm6]	C	T	1.986e^-4	0.946	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2R	8610587	2R_8610587_SNP [dm3] 2R_12723082_SNP [dm6]	T	C	1.988e^-4	0.946	INTRON CG42663
2R	14870408	2R_14870408_SNP [dm3] 2R_18982903_SNP [dm6]	A	T	1.991e^-4	0.946	INTERGENIC
3L	6647482	3L_6647482_SNP [dm3] 3L_6654382_SNP [dm6]	T	G	1.992e^-4	0.946	INTERGENIC
3L	12844028	3L_12844028_SNP [dm3] 3L_12850928_SNP [dm6]	C	T	1.998e^-4	0.946	SYNONYMOUS_CODING Wbp2 UPSTREAM CG10948	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8918547	3L_8918547_SNP [dm3] 3L_8925447_SNP [dm6]	G	T	2.019e^-4	0.946	INTRON Tsp66E	TF binding site BDTNP1_TFBS_twi
2R	16172851	2R_16172851_SNP [dm3] 2R_20285346_SNP [dm6]	C	T	2.033e^-4	0.946	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
2R	15410202	2R_15410202_SNP [dm3] 2R_19522697_SNP [dm6]	A	G	2.034e^-4	0.946	UTR_3_PRIME sm
2L	8376747	2L_8376747_SNP [dm3] 2L_8376747_SNP [dm6]	A	G	2.036e^-4	0.946	SYNONYMOUS_CODING CG13390 UPSTREAM CG17294	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21529357	3R_21529357_SNP [dm3] 3R_25703635_SNP [dm6]	G	T	2.043e^-4	0.946	INTRON LpR2
3R	24754292	3R_24754292_SNP [dm3] 3R_28928570_SNP [dm6]	T	A	2.044e^-4	0.946	INTRON CG14521
2R	16123454	2R_16123454_SNP [dm3] 2R_20235949_SNP [dm6]	A	G	2.054e^-4	0.946	UPSTREAM CG11099 DOWNSTREAM CG44624 & 1 other INTERGENIC
2R	3356324	2R_3356324_SNP [dm3] 2R_7468819_SNP [dm6]	C	T	2.059e^-4	0.946	INTRON Aldh-III
2R	1699590	2R_1699590_SNP [dm3] 2R_5812085_SNP [dm6]	G	A	2.075e^-4	0.946	INTRON dpr12	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16079444	X_16079444_SNP [dm3] X_16185411_SNP [dm6]	A	C	2.084e^-4	0.946	INTERGENIC
2R	14872597	2R_14872597_SNP [dm3] 2R_18985092_SNP [dm6]	A	C	2.085e^-4	0.946	INTERGENIC
3L	5769746	3L_5769746_SNP [dm3] 3L_5776646_SNP [dm6]	C	G	2.092e^-4	0.946	SYNONYMOUS_CODING vito DOWNSTREAM scny & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17785017	3R_17785017_SNP [dm3] 3R_21959295_SNP [dm6]	C	T	2.096e^-4	0.946	INTRON Eip93F
X	17467320	X_17467320_SNP [dm3] X_17573287_SNP [dm6]	C	T	2.114e^-4	0.946	SYNONYMOUS_CODING l_1_G0222	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6750764	2R_6750764_SNP [dm3] 2R_10863259_SNP [dm6]	G	A	2.115e^-4	0.946	INTRON CG30015
3R	10804231	3R_10804231_SNP [dm3] 3R_14978509_SNP [dm6]	C	G	2.128e^-4	0.946	INTERGENIC
3R	15461960	3R_15461960_SNP [dm3] 3R_19636238_SNP [dm6]	A	T	2.131e^-4	0.946	DOWNSTREAM CG34138 INTRON subdued
2L	3670192	2L_3670192_SNP [dm3] 2L_3670192_SNP [dm6]	G	A	2.132e^-4	0.946	SYNONYMOUS_CODING Sfp24Bc UPSTREAM Sfp24Bb INTRON CG34340
2R	15199533	2R_15199533_SNP [dm3] 2R_19312028_SNP [dm6]	T	G	2.136e^-4	0.946	UTR_3_PRIME Rgk1 DOWNSTREAM Rgk1
X	17367042	X_17367042_SNP [dm3] X_17473009_SNP [dm6]	T	C	2.144e^-4	0.946	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	8220310	3L_8220310_SNP [dm3] 3L_8227210_SNP [dm6]	G	A	2.147e^-4	0.946	INTERGENIC
2L	20777622	2L_20777622_SNP [dm3] 2L_20777622_SNP [dm6]	A	G	2.147e^-4	0.946	INTRON cad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8237029	3R_8237029_SNP [dm3] 3R_12411307_SNP [dm6]	T	C	2.151e^-4	0.946	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14951526	2R_14951526_SNP [dm3] 2R_19064021_SNP [dm6]	C	T	2.160e^-4	0.946	INTERGENIC
2L	20956570	2L_20956570_SNP [dm3] 2L_20956570_SNP [dm6]	G	A	2.162e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17083902	3R_17083902_SNP [dm3] 3R_21258180_SNP [dm6]	C	T	2.163e^-4	0.946	INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3197630	2L_3197630_SNP [dm3] 2L_3197630_SNP [dm6]	T	C	2.171e^-4	0.946	INTRON CG34393
3L	18451827	3L_18451827_SNP [dm3] 3L_18458727_SNP [dm6]	C	T	2.172e^-4	0.946	DOWNSTREAM CG32196 INTERGENIC
3L	5897180	3L_5897180_SNP [dm3] 3L_5904080_SNP [dm6]	A	C	2.182e^-4	0.946	UPSTREAM CG32413 DOWNSTREAM CG10486 INTERGENIC
3R	14849754	3R_14849754_SNP [dm3] 3R_19024032_SNP [dm6]	G	C	2.183e^-4	0.946	UPSTREAM CG14286 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	518087	2L_518087_SNP [dm3] 2L_518087_SNP [dm6]	T	C	2.190e^-4	0.946	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7300295	3L_7300295_SNP [dm3] 3L_7307195_SNP [dm6]	G	A	2.190e^-4	0.946	INTRON unc-13-4A
2R	12907886	2R_12907886_SNP [dm3] 2R_17020381_SNP [dm6]	G	A	2.197e^-4	0.946	UPSTREAM CG8963 INTRON Ark	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	744083	2L_744083_SNP [dm3] 2L_744083_SNP [dm6]	C	A	2.203e^-4	0.946	SPLICE_SITE_DONOR Eaat2 INTRON Eaat2
2L	7146066	2L_7146066_SNP [dm3] 2L_7146066_SNP [dm6]	A	T	2.206e^-4	0.946	DOWNSTREAM CR44612 INTRON Pvf3
2R	14574831	2R_14574831_SNP [dm3] 2R_18687326_SNP [dm6]	G	T	2.211e^-4	0.946	UPSTREAM CG42855 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5901108	3L_5901108_SNP [dm3] 3L_5908008_SNP [dm6]	T	C	2.227e^-4	0.946	INTRON CG13288
3R	9901916	3R_9901916_SNP [dm3] 3R_14076194_SNP [dm6]	A	C	2.229e^-4	0.946	INTRON foxo
2L	20529337	2L_20529337_SNP [dm3] 2L_20529337_SNP [dm6]	A	C	2.229e^-4	0.946	INTERGENIC
2R	17291595	2R_17291595_SNP [dm3] 2R_21404090_SNP [dm6]	G	A	2.235e^-4	0.946	INTRON Sdc
3R	15461954	3R_15461954_SNP [dm3] 3R_19636232_SNP [dm6]	T	A	2.237e^-4	0.946	DOWNSTREAM CG34138 INTRON subdued
3R	23240589	3R_23240589_SNP [dm3] 3R_27414867_SNP [dm6]	G	C	2.238e^-4	0.946	INTRON side
3R	19966449	3R_19966449_SNP [dm3] 3R_24140727_SNP [dm6]	C	T	2.239e^-4	0.946	UPSTREAM Kal1 INTRON Npc2f
2L	20526932	2L_20526932_SNP [dm3] 2L_20526932_SNP [dm6]	G	C	2.245e^-4	0.946	INTERGENIC
3R	8233837	3R_8233837_INS [dm3] 3R_12408115_INS [dm6]	T	TGT	2.246e^-4	0.946	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	6972862	2R_6972862_DEL [dm3] 2R_11085357_DEL [dm6]	CAGCGGGCTGC...	C	2.249e^-4	0.946	UPSTREAM CG43188 DOWNSTREAM CG43189 INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23294976	3R_23294976_SNP [dm3] 3R_27469254_SNP [dm6]	T	C	2.253e^-4	0.946	INTERGENIC
2R	18978592	2R_18978592_SNP [dm3] 2R_23091069_SNP [dm6]	C	T	2.255e^-4	0.946	NON_SYNONYMOUS_CODING CG9876	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	20722538	2L_20722538_SNP [dm3] 2L_20722538_SNP [dm6]	G	A	2.255e^-4	0.946	DOWNSTREAM CR45306 INTERGENIC
3R	10627754	3R_10627754_SNP [dm3] 3R_14802032_SNP [dm6]	G	C	2.259e^-4	0.946	SYNONYMOUS_CODING CG14857 DOWNSTREAM CG14856	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	749676	2L_749676_SNP [dm3] 2L_749676_SNP [dm6]	T	A	2.271e^-4	0.946	UPSTREAM GABA-B-R3 INTERGENIC
3R	14849755	3R_14849755_SNP [dm3] 3R_19024033_SNP [dm6]	G	A	2.278e^-4	0.946	UPSTREAM CG14286 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18475405	3L_18475405_SNP [dm3] 3L_18482305_SNP [dm6]	G	C	2.280e^-4	0.946	INTERGENIC
3L	4030918	3L_4030918_SNP [dm3] 3L_4030918_SNP [dm6]	A	T	2.287e^-4	0.946	SYNONYMOUS_CODING Gr64c UTR_3_PRIME Gr64b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8735914	2R_8735914_SNP [dm3] 2R_12848409_SNP [dm6]	C	A	2.287e^-4	0.946	SYNONYMOUS_CODING CG30486 UPSTREAM antr DOWNSTREAM CG17574 EXON CR45468
3R	19164949	3R_19164949_SNP [dm3] 3R_23339227_SNP [dm6]	G	A	2.288e^-4	0.946	INTRON pnt
X	16874742	X_16874742_SNP [dm3] X_16980709_SNP [dm6]	T	C	2.291e^-4	0.946	INTRON CG45002
2R	13351000	2R_13351000_SNP [dm3] 2R_17463495_SNP [dm6]	C	T	2.291e^-4	0.946	SYNONYMOUS_CODING CG14478	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	7136847	2L_7136847_SNP [dm3] 2L_7136847_SNP [dm6]	C	A	2.293e^-4	0.946	INTRON Pvf3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7788520	2L_7788520_SNP [dm3] 2L_7788520_SNP [dm6]	T	G	2.295e^-4	0.946	INTRON CG7149
2R	5781849	2R_5781849_SNP [dm3] 2R_9894344_SNP [dm6]	C	A	2.303e^-4	0.947	SYNONYMOUS_CODING CG30007
2R	13361118	2R_13361118_SNP [dm3] 2R_17473613_SNP [dm6]	A	T	2.312e^-4	0.947	UTR_3_PRIME qkr54B DOWNSTREAM qkr54B
2R	15437688	2R_15437688_SNP [dm3] 2R_19550183_SNP [dm6]	C	T	2.312e^-4	0.947	INTRON sm
2L	20517864	2L_20517864_SNP [dm3] 2L_20517864_SNP [dm6]	A	G	2.345e^-4	0.948	INTERGENIC
2L	20517872	2L_20517872_SNP [dm3] 2L_20517872_SNP [dm6]	A	T	2.345e^-4	0.948	INTERGENIC
2L	4071192	2L_4071192_SNP [dm3] 2L_4071192_SNP [dm6]	C	T	2.349e^-4	0.948	INTRON ed	TF binding site mE1_TFBS_sens
2R	12483679	2R_12483679_SNP [dm3] 2R_16596174_SNP [dm6]	C	T	2.352e^-4	0.948	SYNONYMOUS_CODING CG8303	TF binding site mE1_TFBS_sens
3R	13817493	3R_13817493_SNP [dm3] 3R_17991771_SNP [dm6]	T	C	2.354e^-4	0.948	INTRON cpo
3R	21529045	3R_21529045_SNP [dm3] 3R_25703323_SNP [dm6]	C	G	2.358e^-4	0.948	INTRON LpR2
3R	20059170	3R_20059170_SNP [dm3] 3R_24233448_SNP [dm6]	C	G	2.366e^-4	0.948	INTRON mask	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11745888	3R_11745888_SNP [dm3] 3R_15920166_SNP [dm6]	C	A	2.381e^-4	0.948	UPSTREAM CG4221 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15461979	3R_15461979_MNP [dm3] 3R_19636257_MNP [dm6]	ACC	GTT	2.386e^-4	0.948	DOWNSTREAM CG34138 INTRON subdued
2R	14220914	2R_14220914_SNP [dm3] 2R_18333409_SNP [dm6]	A	T	2.393e^-4	0.948	INTRON sbb	TF binding site BDTNP1_TFBS_dl
2R	13920091	2R_13920091_SNP [dm3] 2R_18032586_SNP [dm6]	T	A	2.394e^-4	0.948	INTERGENIC
3L	8535499	3L_8535499_SNP [dm3] 3L_8542399_SNP [dm6]	T	C	2.394e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14265677	2L_14265677_SNP [dm3] 2L_14265677_SNP [dm6]	A	G	2.394e^-4	0.948	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	14290209	2L_14290209_SNP [dm3] 2L_14290209_SNP [dm6]	C	T	2.400e^-4	0.948	UPSTREAM CR43639 INTRON wb	TF binding site mE1_TFBS_chinmo
X	16810998	X_16810998_SNP [dm3] X_16916965_SNP [dm6]	G	A	2.404e^-4	0.948	INTRON CG4928	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	22489140	3R_22489140_SNP [dm3] 3R_26663418_SNP [dm6]	A	G	2.406e^-4	0.948	INTRON beat-VII
3R	8430334	3R_8430334_SNP [dm3] 3R_12604612_SNP [dm6]	T	C	2.411e^-4	0.948	INTERGENIC
2R	5784679	2R_5784679_SNP [dm3] 2R_9897174_SNP [dm6]	A	G	2.423e^-4	0.948	SYNONYMOUS_CODING CG30007
2R	15033575	2R_15033575_SNP [dm3] 2R_19146070_SNP [dm6]	A	G	2.428e^-4	0.948	DOWNSTREAM CR43399 INTRON ena	TF binding site mE1_TFBS_inv
2R	14410942	2R_14410942_SNP [dm3] 2R_18523437_SNP [dm6]	C	G	2.429e^-4	0.948	UTR_3_PRIME CG43066 INTRON CG43066
2L	20517934	2L_20517934_SNP [dm3] 2L_20517934_SNP [dm6]	T	A	2.437e^-4	0.948	INTERGENIC
2R	6928999	2R_6928999_SNP [dm3] 2R_11041494_SNP [dm6]	T	C	2.438e^-4	0.948	INTRON luna
3L	5897191	3L_5897191_SNP [dm3] 3L_5904091_SNP [dm6]	G	A	2.446e^-4	0.948	UPSTREAM CG32413 DOWNSTREAM CG10486 INTERGENIC
2L	10126375	2L_10126375_SNP [dm3] 2L_10126375_SNP [dm6]	A	T	2.447e^-4	0.948	DOWNSTREAM CG34109 INTRON CG44153
2R	6036195	2R_6036195_SNP [dm3] 2R_10148690_SNP [dm6]	C	T	2.447e^-4	0.948	NON_SYNONYMOUS_CODING KCNQ INTRON KCNQ
3L	4291306	3L_4291306_SNP [dm3] 3L_4291306_SNP [dm6]	G	A	2.450e^-4	0.948	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
2L	9351875	2L_9351875_SNP [dm3] 2L_9351875_SNP [dm6]	C	A	2.453e^-4	0.948	DOWNSTREAM CG13110 INTERGENIC
2R	17429357	2R_17429357_SNP [dm3] 2R_21541852_SNP [dm6]	A	T	2.458e^-4	0.948	INTRON Egfr	TF binding site mE1_TFBS_Trl
2R	19501455	2R_19501455_SNP [dm3] 2R_23613932_SNP [dm6]	T	C	2.463e^-4	0.948	INTRON CG17664 & 1 other
3R	15461905	3R_15461905_SNP [dm3] 3R_19636183_SNP [dm6]	T	A	2.473e^-4	0.948	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3L	12630112	3L_12630112_SNP [dm3] 3L_12637012_SNP [dm6]	T	G	2.478e^-4	0.948	INTRON CR32111
3L	11524966	3L_11524966_SNP [dm3] 3L_11531866_SNP [dm6]	A	G	2.479e^-4	0.948	INTRON Mob2
3L	8261221	3L_8261221_SNP [dm3] 3L_8268121_SNP [dm6]	C	A	2.492e^-4	0.948	INTRON Dscam4
2R	6509693	2R_6509693_SNP [dm3] 2R_10622188_SNP [dm6]	G	T	2.500e^-4	0.948	UPSTREAM CG11883 INTRON CG11883
3R	13817402	3R_13817402_INS [dm3] 3R_17991680_INS [dm6]	A	AGA	2.501e^-4	0.948	INTRON cpo
3R	3867960	3R_3867960_SNP [dm3] 3R_8042238_SNP [dm6]	G	T	2.507e^-4	0.948	DOWNSTREAM CG43060 INTRON CG43060
2R	13547552	2R_13547552_SNP [dm3] 2R_17660047_SNP [dm6]	T	C	2.508e^-4	0.948	INTRON CCHa1-R
2R	5777768	2R_5777768_DEL [dm3] 2R_9890263_DEL [dm6]	AGACCTTTAA	A	2.509e^-4	0.948	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
3R	17785177	3R_17785177_SNP [dm3] 3R_21959455_SNP [dm6]	T	C	2.517e^-4	0.948	INTRON Eip93F
3R	12447432	3R_12447432_DEL [dm3] 3R_16621710_DEL [dm6]	AT	A	2.521e^-4	0.948	INTRON CG14893	TF binding site mE1_TFBS_sens
2L	713988	2L_713988_SNP [dm3] 2L_713988_SNP [dm6]	T	C	2.529e^-4	0.948	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5735690	2R_5735690_SNP [dm3] 2R_9848185_SNP [dm6]	A	G	2.529e^-4	0.948	UPSTREAM Prosalpha7 INTRON CG1671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	18950964	2L_18950964_SNP [dm3] 2L_18950964_SNP [dm6]	G	A	2.537e^-4	0.948	UTR_3_PRIME CG10428 DOWNSTREAM Nedd8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	2.539e^-4	0.948	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	6960123	3L_6960123_SNP [dm3] 3L_6967023_SNP [dm6]	T	C	2.543e^-4	0.948	SYNONYMOUS_CODING CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16826245	3L_16826245_SNP [dm3] 3L_16833145_SNP [dm6]	G	A	2.550e^-4	0.948	INTERGENIC
2L	20517868	2L_20517868_SNP [dm3] 2L_20517868_SNP [dm6]	C	T	2.552e^-4	0.948	INTERGENIC
2R	6406961	2R_6406961_SNP [dm3] 2R_10519456_SNP [dm6]	C	T	2.556e^-4	0.948	DOWNSTREAM lola INTRON lola
2R	5023665	2R_5023665_SNP [dm3] 2R_9136160_SNP [dm6]	C	T	2.561e^-4	0.948	DOWNSTREAM Hydr1 INTRON alc	TF binding site mE1_TFBS_cad
3L	5791422	3L_5791422_SNP [dm3] 3L_5798322_SNP [dm6]	C	A	2.581e^-4	0.953	UTR_3_PRIME S6k DOWNSTREAM S6k
2L	624592	2L_624592_SNP [dm3] 2L_624592_SNP [dm6]	A	T	2.594e^-4	0.953	UPSTREAM lectin-21Ca & 1 other DOWNSTREAM CR44797 INTERGENIC
2R	14574839	2R_14574839_SNP [dm3] 2R_18687334_SNP [dm6]	A	G	2.614e^-4	0.953	UPSTREAM CG42855 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21852411	3R_21852411_SNP [dm3] 3R_26026689_SNP [dm6]	G	T	2.617e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	15198534	2R_15198534_SNP [dm3] 2R_19311029_SNP [dm6]	G	T	2.626e^-4	0.953	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	2.632e^-4	0.953	UPSTREAM hoe1 INTRON hoe1
2R	17374100	2R_17374100_SNP [dm3] 2R_21486595_SNP [dm6]	T	C	2.637e^-4	0.953	SYNONYMOUS_CODING Sara DOWNSTREAM Fkbp14	TF binding site mE1_TFBS_HSA
2R	19821847	2R_19821847_SNP [dm3] 2R_23934324_SNP [dm6]	A	T	2.651e^-4	0.953	UPSTREAM Ca-P60A INTRON Ca-P60A	TF binding site mE1_TFBS_HSA
2L	4009376	2L_4009376_SNP [dm3] 2L_4009376_SNP [dm6]	G	A	2.655e^-4	0.953	DOWNSTREAM CG43774 INTERGENIC
3L	14266583	3L_14266583_SNP [dm3] 3L_14273483_SNP [dm6]	A	T	2.656e^-4	0.953	UPSTREAM fz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5897178	3L_5897178_SNP [dm3] 3L_5904078_SNP [dm6]	T	G	2.660e^-4	0.953	UPSTREAM CG32413 DOWNSTREAM CG10486 INTERGENIC
3R	7284476	3R_7284476_SNP [dm3] 3R_11458754_SNP [dm6]	T	C	2.661e^-4	0.953	UPSTREAM PGRP-LB INTRON CG17230 & 1 other
3R	14119500	3R_14119500_SNP [dm3] 3R_18293778_SNP [dm6]	T	C	2.666e^-4	0.953	INTRON l_3_05822
2L	660243	2L_660243_SNP [dm3] 2L_660243_SNP [dm6]	T	C	2.678e^-4	0.953	INTRON ds	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	700864	2L_700864_SNP [dm3] 2L_700864_SNP [dm6]	C	T	2.678e^-4	0.953	INTRON ds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	711338	2L_711338_SNP [dm3] 2L_711338_SNP [dm6]	A	G	2.678e^-4	0.953	INTRON ds & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	715136	2L_715136_SNP [dm3] 2L_715136_SNP [dm6]	T	C	2.678e^-4	0.953	UPSTREAM ds EXON CR44988	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10063681	3L_10063681_SNP [dm3] 3L_10070581_SNP [dm6]	A	T	2.682e^-4	0.953	INTRON dpr6
2L	401402	2L_401402_SNP [dm3] 2L_401402_SNP [dm6]	C	G	2.689e^-4	0.953	NON_SYNONYMOUS_CODING CG4213	TF binding site mE1_TFBS_cad
2L	20517126	2L_20517126_SNP [dm3] 2L_20517126_SNP [dm6]	G	A	2.690e^-4	0.953	INTERGENIC
3L	18442919	3L_18442919_SNP [dm3] 3L_18449819_SNP [dm6]	A	G	2.694e^-4	0.953	INTERGENIC
3R	9499400	3R_9499400_SNP [dm3] 3R_13673678_SNP [dm6]	G	C	2.695e^-4	0.953	UTR_5_PRIME Task6 INTRON Task6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	5777540	2R_5777540_SNP [dm3] 2R_9890035_SNP [dm6]	T	C	2.701e^-4	0.953	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
3L	834152	3L_834152_SNP [dm3] 3L_834152_SNP [dm6]	T	C	2.702e^-4	0.953	START_GAINED CG42553 UTR_5_PRIME CG42553 UPSTREAM snoRNA:Psi18S-1086 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12095035	3L_12095035_SNP [dm3] 3L_12101935_SNP [dm6]	A	G	2.705e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	14778902	2R_14778902_SNP [dm3] 2R_18891397_SNP [dm6]	T	C	2.707e^-4	0.953	INTRON sano
2R	18425409	2R_18425409_SNP [dm3] 2R_22537904_SNP [dm6]	C	A	2.716e^-4	0.953	INTRON px
3L	2456823	3L_2456823_SNP [dm3] 3L_2456823_SNP [dm6]	C	A	2.718e^-4	0.953	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22927248	3R_22927248_SNP [dm3] 3R_27101526_SNP [dm6]	C	T	2.726e^-4	0.953	NON_SYNONYMOUS_CODING CG17189
X	9914999	X_9914999_SNP [dm3] X_10020966_SNP [dm6]	G	A	2.730e^-4	0.953	INTRON Cht6
3L	5063371	3L_5063371_SNP [dm3] 3L_5063371_SNP [dm6]	G	A	2.740e^-4	0.955	INTRON Con
3L	12694552	3L_12694552_SNP [dm3] 3L_12701452_SNP [dm6]	A	G	2.756e^-4	0.959	INTRON mirr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	703262	2L_703262_SNP [dm3] 2L_703262_SNP [dm6]	A	T	2.767e^-4	0.959	INTRON ds	TF binding site BDTNP1_TFBS_dl
2L	2855326	2L_2855326_SNP [dm3] 2L_2855326_SNP [dm6]	C	A	2.771e^-4	0.959	UPSTREAM RpS21 & 1 other INTRON CG3104	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	659482	2L_659482_SNP [dm3] 2L_659482_SNP [dm6]	A	G	2.774e^-4	0.959	INTRON ds
2R	10200098	2R_10200098_SNP [dm3] 2R_14312593_SNP [dm6]	A	T	2.786e^-4	0.959	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10200165	2R_10200165_SNP [dm3] 2R_14312660_SNP [dm6]	C	T	2.786e^-4	0.959	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	733163	2L_733163_SNP [dm3] 2L_733163_SNP [dm6]	C	T	2.788e^-4	0.959	INTERGENIC
X	11555039	X_11555039_SNP [dm3] X_11661006_SNP [dm6]	C	G	2.791e^-4	0.959	INTRON Ptp10D
2R	16281248	2R_16281248_SNP [dm3] 2R_20393743_SNP [dm6]	G	A	2.799e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	713980	2L_713980_SNP [dm3] 2L_713980_SNP [dm6]	C	T	2.826e^-4	0.96	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19145438	3R_19145438_SNP [dm3] 3R_23319716_SNP [dm6]	A	T	2.829e^-4	0.96	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	17040984	2L_17040984_SNP [dm3] 2L_17040984_SNP [dm6]	C	T	2.835e^-4	0.96	INTERGENIC
3L	15503359	3L_15503359_SNP [dm3] 3L_15510259_SNP [dm6]	G	T	2.836e^-4	0.96	UPSTREAM Eip71CD DOWNSTREAM Z600 INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	15503365	3L_15503365_SNP [dm3] 3L_15510265_SNP [dm6]	T	A	2.836e^-4	0.96	UPSTREAM Eip71CD DOWNSTREAM Z600 INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	12780131	3R_12780131_SNP [dm3] 3R_16954409_SNP [dm6]	A	C	2.839e^-4	0.96	INTRON Abd-B	TF binding site mE1_TFBS_cad
3L	16253554	3L_16253554_SNP [dm3] 3L_16260454_SNP [dm6]	A	G	2.840e^-4	0.96	UPSTREAM CG13053 DOWNSTREAM CG34247 INTERGENIC
3R	15461926	3R_15461926_SNP [dm3] 3R_19636204_SNP [dm6]	A	T	2.848e^-4	0.96	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
X	9233931	X_9233931_SNP [dm3] X_9339898_SNP [dm6]	C	A	2.849e^-4	0.96	INTRON CG34449
3R	13817405	3R_13817405_INS [dm3] 3R_17991683_INS [dm6]	T	TG	2.851e^-4	0.96	INTRON cpo
3R	15461945	3R_15461945_SNP [dm3] 3R_19636223_SNP [dm6]	C	T	2.869e^-4	0.964	SPLICE_SITE_REGION subdued DOWNSTREAM CG34138 INTRON subdued
3R	24759212	3R_24759212_SNP [dm3] 3R_28933490_SNP [dm6]	A	T	2.882e^-4	0.966	INTRON CG14521
X	4244988	X_4244988_SNP [dm3] X_4350955_SNP [dm6]	C	T	2.893e^-4	0.966	INTRON norpA
2L	2087572	2L_2087572_SNP [dm3] 2L_2087572_SNP [dm6]	A	T	2.894e^-4	0.966	INTRON dpr3
X	15364163	X_15364163_SNP [dm3] X_15470130_SNP [dm6]	G	T	2.907e^-4	0.966	SYNONYMOUS_CODING Grip128	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10803859	3R_10803859_SNP [dm3] 3R_14978137_SNP [dm6]	C	A	2.911e^-4	0.966	INTERGENIC
2R	14677334	2R_14677334_SNP [dm3] 2R_18789829_SNP [dm6]	T	G	2.912e^-4	0.966	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
X	9200860	X_9200860_SNP [dm3] X_9306827_SNP [dm6]	T	C	2.930e^-4	0.966	INTERGENIC
2R	5821286	2R_5821286_SNP [dm3] 2R_9933781_SNP [dm6]	G	C	2.937e^-4	0.966	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18253492	2R_18253492_SNP [dm3] 2R_22365987_SNP [dm6]	T	A	2.940e^-4	0.966	INTRON Liprin-gamma
3L	12641259	3L_12641259_INS [dm3] 3L_12648159_INS [dm6]	T	TGTT	2.944e^-4	0.966	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	12009544	3R_12009544_SNP [dm3] 3R_16183822_SNP [dm6]	C	A	2.954e^-4	0.966	INTRON CG8927
2R	15198541	2R_15198541_DEL [dm3] 2R_19311036_DEL [dm6]	AATCATTTTTCAACAT...	A	2.964e^-4	0.966	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
2L	20513656	2L_20513656_SNP [dm3] 2L_20513656_SNP [dm6]	A	T	2.972e^-4	0.966	UPSTREAM CR45702 INTERGENIC
2L	9445997	2L_9445997_SNP [dm3] 2L_9445997_SNP [dm6]	C	T	2.973e^-4	0.966	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	21263910	3R_21263910_SNP [dm3] 3R_25438188_SNP [dm6]	T	G	2.974e^-4	0.966	INTRON Fur1
2L	2087424	2L_2087424_SNP [dm3] 2L_2087424_SNP [dm6]	T	A	2.975e^-4	0.966	INTRON dpr3
3L	15502816	3L_15502816_SNP [dm3] 3L_15509716_SNP [dm6]	G	A	2.982e^-4	0.966	UTR_5_PRIME gdl UTR_3_PRIME gdl-ORF39 DOWNSTREAM Z600	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9851138	2L_9851138_SNP [dm3] 2L_9851138_SNP [dm6]	T	C	2.988e^-4	0.966	INTRON nAChRalpha6
2L	5827124	2L_5827124_SNP [dm3] 2L_5827124_SNP [dm6]	G	A	2.990e^-4	0.966	INTRON TrissinR
2L	4861662	2L_4861662_SNP [dm3] 2L_4861662_SNP [dm6]	T	A	2.998e^-4	0.966	INTRON pog
2R	1063653	2R_1063653_SNP [dm3] 2R_5176148_SNP [dm6]	A	G	2.999e^-4	0.966	INTERGENIC	transposable element FlyBase
3L	5770945	3L_5770945_SNP [dm3] 3L_5777845_SNP [dm6]	G	C	3.002e^-4	0.966	SYNONYMOUS_CODING Myt1 UPSTREAM vito	TF binding site BDTNP1_TFBS_twi
2L	2936376	2L_2936376_SNP [dm3] 2L_2936376_SNP [dm6]	G	A	3.003e^-4	0.966	INTRON lilli
2L	17430665	2L_17430665_INS [dm3] 2L_17430665_INS [dm6]	C	CAT	3.018e^-4	0.966	DOWNSTREAM CR44409 INTRON Dif
2L	17430667	2L_17430667_SNP [dm3] 2L_17430667_SNP [dm6]	A	T	3.018e^-4	0.966	DOWNSTREAM CR44409 INTRON Dif
2L	549339	2L_549339_SNP [dm3] 2L_549339_SNP [dm6]	C	T	3.021e^-4	0.966	UTR_5_PRIME Ets21C INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7074433	2L_7074433_SNP [dm3] 2L_7074433_SNP [dm6]	T	A	3.021e^-4	0.966	INTRON Pvf2
3L	5063484	3L_5063484_SNP [dm3] 3L_5063484_SNP [dm6]	T	C	3.025e^-4	0.966	INTRON Con
2R	15716446	2R_15716446_SNP [dm3] 2R_19828941_SNP [dm6]	G	A	3.026e^-4	0.966	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20232911	3R_20232911_SNP [dm3] 3R_24407189_SNP [dm6]	G	C	3.033e^-4	0.966	INTRON nAChRalpha1
2L	15177343	2L_15177343_DEL [dm3] 2L_15177343_DEL [dm6]	TCT	AG	3.035e^-4	0.966	INTRON CG4168
3R	12009082	3R_12009082_SNP [dm3] 3R_16183360_SNP [dm6]	T	A	3.047e^-4	0.966	INTRON CG8927
2R	17735605	2R_17735605_SNP [dm3] 2R_21848100_SNP [dm6]	C	T	3.066e^-4	0.966	DOWNSTREAM tRNA:CR30406 INTERGENIC
3L	13393927	3L_13393927_SNP [dm3] 3L_13400827_SNP [dm6]	C	A	3.067e^-4	0.966	SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17918693	2R_17918693_SNP [dm3] 2R_22031188_SNP [dm6]	G	A	3.072e^-4	0.966	INTRON CG34370
2R	8696249	2R_8696249_SNP [dm3] 2R_12808744_SNP [dm6]	T	C	3.075e^-4	0.966	DOWNSTREAM CG17580 INTERGENIC
2L	803256	2L_803256_SNP [dm3] 2L_803256_SNP [dm6]	A	G	3.087e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13133813	2R_13133813_DEL [dm3] 2R_17246308_DEL [dm6]	AATC	T	3.088e^-4	0.966	UPSTREAM CG18469 DOWNSTREAM CG12699 INTRON mbl
3R	22901863	3R_22901863_INS [dm3] 3R_27076141_INS [dm6]	A	AT	3.090e^-4	0.966	UTR_5_PRIME CG14257	TF binding site mE1_TFBS_Trl
2R	5782314	2R_5782314_SNP [dm3] 2R_9894809_SNP [dm6]	A	G	3.096e^-4	0.966	NON_SYNONYMOUS_CODING CG30007
3L	12049992	3L_12049992_DEL [dm3] 3L_12056892_DEL [dm6]	ATCAG	T	3.107e^-4	0.966	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17735831	2R_17735831_SNP [dm3] 2R_21848326_SNP [dm6]	A	G	3.107e^-4	0.966	DOWNSTREAM tRNA:CR30406 INTERGENIC	TF binding site mE1_TFBS_cad
X	2769499	X_2769499_DEL [dm3] X_2875466_DEL [dm6]	AA	A	3.115e^-4	0.966	UTR_3_PRIME CG14417 INTRON kirre
3R	23269845	3R_23269845_SNP [dm3] 3R_27444123_SNP [dm6]	T	G	3.119e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12641267	3L_12641267_SNP [dm3] 3L_12648167_SNP [dm6]	T	G	3.120e^-4	0.966	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	21505716	3R_21505716_SNP [dm3] 3R_25679994_SNP [dm6]	G	T	3.124e^-4	0.966	SYNONYMOUS_CODING CG4743 UPSTREAM CG5028 DOWNSTREAM CG5039	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4647129	3L_4647129_SNP [dm3] 3L_4647129_SNP [dm6]	C	T	3.127e^-4	0.966	INTRON axo
X	16844829	X_16844829_SNP [dm3] X_16950796_SNP [dm6]	T	C	3.140e^-4	0.966	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
X	16844844	X_16844844_SNP [dm3] X_16950811_SNP [dm6]	C	G	3.140e^-4	0.966	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
2R	15036206	2R_15036206_SNP [dm3] 2R_19148701_SNP [dm6]	G	A	3.152e^-4	0.966	INTRON ena
3L	7300250	3L_7300250_SNP [dm3] 3L_7307150_SNP [dm6]	T	A	3.159e^-4	0.966	INTRON unc-13-4A
2L	14265675	2L_14265675_SNP [dm3] 2L_14265675_SNP [dm6]	A	G	3.162e^-4	0.966	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	7074435	2L_7074435_SNP [dm3] 2L_7074435_SNP [dm6]	A	C	3.167e^-4	0.966	INTRON Pvf2
2R	14572553	2R_14572553_SNP [dm3] 2R_18685048_SNP [dm6]	C	A	3.169e^-4	0.966	NON_SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20134024	3R_20134024_SNP [dm3] 3R_24308302_SNP [dm6]	C	A	3.171e^-4	0.966	SYNONYMOUS_CODING crb
2R	13380645	2R_13380645_SNP [dm3] 2R_17493140_SNP [dm6]	C	T	3.172e^-4	0.966	UTR_3_PRIME NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	20527678	2L_20527678_SNP [dm3] 2L_20527678_SNP [dm6]	C	T	3.172e^-4	0.966	INTERGENIC
2R	13100348	2R_13100348_SNP [dm3] 2R_17212843_SNP [dm6]	T	G	3.173e^-4	0.966	INTERGENIC
2R	18243962	2R_18243962_SNP [dm3] 2R_22356457_SNP [dm6]	A	G	3.189e^-4	0.968	INTRON Liprin-gamma
2R	13349916	2R_13349916_SNP [dm3] 2R_17462411_SNP [dm6]	C	G	3.201e^-4	0.968	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17366918	X_17366918_SNP [dm3] X_17472885_SNP [dm6]	A	C	3.202e^-4	0.968	INTRON CG43658	TF binding site mE1_TFBS_cad
3R	19145446	3R_19145446_DEL [dm3] 3R_23319724_DEL [dm6]	TCAAAAGGAAAGTATTTCCT...	C	3.208e^-4	0.968	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	5385771	2L_5385771_SNP [dm3] 2L_5385771_SNP [dm6]	G	T	3.216e^-4	0.968	INTERGENIC
2R	16281345	2R_16281345_SNP [dm3] 2R_20393840_SNP [dm6]	T	G	3.225e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	521512	2L_521512_INS [dm3] 2L_521512_INS [dm6]	T	TGGCTGTGATGTATT...	3.239e^-4	0.968	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	792780	2L_792780_SNP [dm3] 2L_792780_SNP [dm6]	A	T	3.248e^-4	0.968	INTERGENIC
2R	8733262	2R_8733262_SNP [dm3] 2R_12845757_SNP [dm6]	G	A	3.248e^-4	0.968	SYNONYMOUS_CODING CG17575	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15029979	2L_15029979_SNP [dm3] 2L_15029979_SNP [dm6]	C	T	3.249e^-4	0.968	SPLICE_SITE_REGION GABA-B-R1 DOWNSTREAM CG33310 & 1 other INTRON GABA-B-R1
2R	14870390	2R_14870390_SNP [dm3] 2R_18982885_SNP [dm6]	C	G	3.256e^-4	0.968	INTERGENIC
2L	19717735	2L_19717735_SNP [dm3] 2L_19717735_SNP [dm6]	G	A	3.258e^-4	0.968	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7511109	2L_7511109_SNP [dm3] 2L_7511109_SNP [dm6]	G	A	3.259e^-4	0.968	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17817883	2R_17817883_SNP [dm3] 2R_21930378_SNP [dm6]	G	T	3.261e^-4	0.968	INTRON Fili
3R	9164053	3R_9164053_SNP [dm3] 3R_13338331_SNP [dm6]	G	C	3.278e^-4	0.968	UTR_5_PRIME PK2-R1
3L	5637378	3L_5637378_SNP [dm3] 3L_5644278_SNP [dm6]	G	C	3.284e^-4	0.968	NON_SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21254418	3R_21254418_SNP [dm3] 3R_25428696_SNP [dm6]	A	C	3.288e^-4	0.968	INTRON Fur1
2L	7917123	2L_7917123_SNP [dm3] 2L_7917123_SNP [dm6]	G	T	3.294e^-4	0.968	INTRON Snoo
2L	7146077	2L_7146077_DEL [dm3] 2L_7146077_DEL [dm6]	GGAAT	G	3.296e^-4	0.968	DOWNSTREAM CR44612 INTRON Pvf3
2R	16450290	2R_16450290_SNP [dm3] 2R_20562785_SNP [dm6]	T	A	3.297e^-4	0.968	UPSTREAM Mgat1 DOWNSTREAM qsm & 1 other INTRON CG43308	TF binding site BDTNP1_TFBS_dl
2R	18236394	2R_18236394_SNP [dm3] 2R_22348889_SNP [dm6]	T	G	3.320e^-4	0.968	DOWNSTREAM CG11298 INTRON Liprin-gamma
2R	6151812	2R_6151812_DEL [dm3] 2R_10264307_DEL [dm6]	CC	G	3.323e^-4	0.968	UPSTREAM CR30009 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	701615	2L_701615_SNP [dm3] 2L_701615_SNP [dm6]	G	A	3.329e^-4	0.968	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2128160	3R_2128160_SNP [dm3] 3R_6302438_SNP [dm6]	A	C	3.331e^-4	0.968	INTRON Osi15	TF binding site mE1_TFBS_cad
X	9200882	X_9200882_SNP [dm3] X_9306849_SNP [dm6]	T	A	3.334e^-4	0.968	INTERGENIC
2R	5731932	2R_5731932_SNP [dm3] 2R_9844427_SNP [dm6]	T	C	3.335e^-4	0.968	INTRON CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	2718661	2R_2718661_SNP [dm3] 2R_6831156_SNP [dm6]	A	T	3.336e^-4	0.968	DOWNSTREAM CG34215 INTRON CG15236
3R	15645289	3R_15645289_SNP [dm3] 3R_19819567_SNP [dm6]	G	A	3.338e^-4	0.968	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11025077	3L_11025077_SNP [dm3] 3L_11031977_SNP [dm6]	G	C	3.352e^-4	0.968	INTERGENIC
2R	17817931	2R_17817931_SNP [dm3] 2R_21930426_SNP [dm6]	A	C	3.356e^-4	0.968	INTRON Fili
3R	25470285	3R_25470285_SNP [dm3] 3R_29644563_SNP [dm6]	A	G	3.372e^-4	0.968	INTRON Dop1R2
3R	21199905	3R_21199905_SNP [dm3] 3R_25374183_SNP [dm6]	G	C	3.372e^-4	0.968	INTRON Fur1
3L	8261742	3L_8261742_SNP [dm3] 3L_8268642_SNP [dm6]	G	T	3.376e^-4	0.968	INTRON Dscam4
3L	16988909	3L_16988909_SNP [dm3] 3L_16995809_SNP [dm6]	C	T	3.378e^-4	0.968	SYNONYMOUS_CODING CG3764	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24607864	3R_24607864_SNP [dm3] 3R_28782142_SNP [dm6]	A	T	3.378e^-4	0.968	INTERGENIC
3L	8455806	3L_8455806_SNP [dm3] 3L_8462706_SNP [dm6]	A	T	3.386e^-4	0.968	INTRON Gug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	3.419e^-4	0.968	INTRON Octbeta3R
2L	4902224	2L_4902224_SNP [dm3] 2L_4902224_SNP [dm6]	C	T	3.423e^-4	0.968	SYNONYMOUS_CODING CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21149774	X_21149774_SNP [dm3] X_21278747_SNP [dm6]	T	C	3.424e^-4	0.968	INTRON CG32521
X	7663498	X_7663498_SNP [dm3] X_7769465_SNP [dm6]	T	A	3.431e^-4	0.968	DOWNSTREAM CG34338 INTERGENIC
2L	658188	2L_658188_SNP [dm3] 2L_658188_SNP [dm6]	T	A	3.433e^-4	0.968	INTRON ds
X	17366962	X_17366962_SNP [dm3] X_17472929_SNP [dm6]	T	A	3.438e^-4	0.968	INTRON CG43658	TF binding site mE1_TFBS_cad
2R	15991498	2R_15991498_DEL [dm3] 2R_20103993_DEL [dm6]	AGAAACTGTA	A	3.441e^-4	0.968	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
X	13683909	X_13683909_DEL [dm3] X_13789876_DEL [dm6]	AAAGC	A	3.442e^-4	0.968	DOWNSTREAM CG10993 INTRON inaE
3L	6123346	3L_6123346_SNP [dm3] 3L_6130246_SNP [dm6]	A	C	3.454e^-4	0.968	DOWNSTREAM Lcp65Ag3 & 1 other INTERGENIC
2R	8661886	2R_8661886_DEL [dm3] 2R_12774381_DEL [dm6]	TTTAT	T	3.454e^-4	0.968	INTERGENIC
3R	14367136	3R_14367136_SNP [dm3] 3R_18541414_SNP [dm6]	A	C	3.463e^-4	0.968	INTRON fru
3R	14120061	3R_14120061_SNP [dm3] 3R_18294339_SNP [dm6]	A	G	3.478e^-4	0.968	INTRON l_3_05822
3L	1198932	3L_1198932_SNP [dm3] 3L_1198932_SNP [dm6]	T	C	3.481e^-4	0.968	UTR_3_PRIME Aplip1
3L	16253536	3L_16253536_SNP [dm3] 3L_16260436_SNP [dm6]	G	A	3.485e^-4	0.968	UPSTREAM CG13053 DOWNSTREAM CG34247 INTERGENIC
3L	12050039	3L_12050039_INS [dm3] 3L_12056939_INS [dm6]	TT	AAG	3.486e^-4	0.968	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15503358	3L_15503358_SNP [dm3] 3L_15510258_SNP [dm6]	C	T	3.496e^-4	0.968	UPSTREAM Eip71CD DOWNSTREAM Z600 INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	22039669	3R_22039669_SNP [dm3] 3R_26213947_SNP [dm6]	G	T	3.496e^-4	0.968	INTERGENIC
3L	14266471	3L_14266471_SNP [dm3] 3L_14273371_SNP [dm6]	A	G	3.502e^-4	0.968	UPSTREAM fz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	11649585	3R_11649585_SNP [dm3] 3R_15823863_SNP [dm6]	T	C	3.505e^-4	0.968	UTR_3_PRIME alpha-Man-IIb & 1 other DOWNSTREAM rec
2L	14266037	2L_14266037_SNP [dm3] 2L_14266037_SNP [dm6]	C	T	3.506e^-4	0.968	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	7728507	X_7728507_SNP [dm3] X_7834474_SNP [dm6]	T	C	3.512e^-4	0.968	INTRON CG1402
X	16844840	X_16844840_SNP [dm3] X_16950807_SNP [dm6]	G	A	3.518e^-4	0.968	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
2L	4912312	2L_4912312_SNP [dm3] 2L_4912312_SNP [dm6]	G	A	3.522e^-4	0.968	INTRON hoe1
3R	14359136	3R_14359136_SNP [dm3] 3R_18533414_SNP [dm6]	G	T	3.529e^-4	0.968	INTRON fru
3R	15462384	3R_15462384_SNP [dm3] 3R_19636662_SNP [dm6]	A	T	3.544e^-4	0.968	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3L	8918641	3L_8918641_SNP [dm3] 3L_8925541_SNP [dm6]	A	T	3.551e^-4	0.968	INTRON Tsp66E	TF binding site BDTNP1_TFBS_twi
X	16868115	X_16868115_SNP [dm3] X_16974082_SNP [dm6]	G	C	3.556e^-4	0.968	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	2226236	X_2226236_INS [dm3] X_2332203_INS [dm6]	A	AG	3.565e^-4	0.968	INTRON phl & 1 other
3L	12050085	3L_12050085_SNP [dm3] 3L_12056985_SNP [dm6]	G	A	3.572e^-4	0.968	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10076323	3R_10076323_SNP [dm3] 3R_14250601_SNP [dm6]	T	A	3.585e^-4	0.968	DOWNSTREAM Aats-met INTERGENIC
3L	6546938	3L_6546938_SNP [dm3] 3L_6553838_SNP [dm6]	C	T	3.588e^-4	0.968	INTRON CG18769
X	2158653	X_2158653_SNP [dm3] X_2264620_SNP [dm6]	G	C	3.592e^-4	0.968	UTR_3_PRIME CG3071 DOWNSTREAM CG2924
2R	13133935	2R_13133935_SNP [dm3] 2R_17246430_SNP [dm6]	A	C	3.592e^-4	0.968	UPSTREAM CG18469 DOWNSTREAM CG12699 INTRON mbl
3R	19920507	3R_19920507_SNP [dm3] 3R_24094785_SNP [dm6]	G	A	3.592e^-4	0.968	INTRON 4EHP
3R	21515614	3R_21515614_SNP [dm3] 3R_25689892_SNP [dm6]	C	A	3.592e^-4	0.968	INTERGENIC
2R	13014675	2R_13014675_SNP [dm3] 2R_17127170_SNP [dm6]	G	A	3.593e^-4	0.968	UPSTREAM CG15605 DOWNSTREAM Amy-d INTERGENIC
2L	15029923	2L_15029923_SNP [dm3] 2L_15029923_SNP [dm6]	A	C	3.612e^-4	0.968	DOWNSTREAM CG33310 INTRON GABA-B-R1
3L	4104373	3L_4104373_SNP [dm3] 3L_4104373_SNP [dm6]	C	T	3.616e^-4	0.968	SYNONYMOUS_CODING Fit1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17735785	2R_17735785_DEL [dm3] 2R_21848280_DEL [dm6]	AG	A	3.620e^-4	0.968	DOWNSTREAM tRNA:CR30406 INTERGENIC
2R	8930106	2R_8930106_SNP [dm3] 2R_13042601_SNP [dm6]	C	T	3.621e^-4	0.968	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18782580	2R_18782580_SNP [dm3] 2R_22895057_SNP [dm6]	C	T	3.625e^-4	0.968	DOWNSTREAM MED23 INTRON CG3700	TF binding site mE1_TFBS_cad
3L	5063494	3L_5063494_SNP [dm3] 3L_5063494_SNP [dm6]	A	T	3.629e^-4	0.968	INTRON Con
3R	7393892	3R_7393892_SNP [dm3] 3R_11568170_SNP [dm6]	C	A	3.633e^-4	0.968	INTERGENIC
3R	19907924	3R_19907924_SNP [dm3] 3R_24082202_SNP [dm6]	T	A	3.633e^-4	0.968	INTRON 4EHP
2R	5732318	2R_5732318_SNP [dm3] 2R_9844813_SNP [dm6]	A	G	3.640e^-4	0.968	SYNONYMOUS_CODING CG1667 DOWNSTREAM Orc6
3L	7451160	3L_7451160_SNP [dm3] 3L_7458060_SNP [dm6]	C	T	3.643e^-4	0.968	INTRON ppk26
2R	14086684	2R_14086684_SNP [dm3] 2R_18199179_SNP [dm6]	T	G	3.646e^-4	0.968	INTERGENIC
3R	24431967	3R_24431967_SNP [dm3] 3R_28606245_SNP [dm6]	G	T	3.654e^-4	0.968	SYNONYMOUS_CODING CG9986 DOWNSTREAM Hrb98DE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8627626	2R_8627626_SNP [dm3] 2R_12740121_SNP [dm6]	T	G	3.655e^-4	0.968	INTRON CG42663
3L	4733848	3L_4733848_SNP [dm3] 3L_4733848_SNP [dm6]	G	A	3.655e^-4	0.968	INTRON RhoGEF64C
2L	5162685	2L_5162685_SNP [dm3] 2L_5162685_SNP [dm6]	A	G	3.658e^-4	0.968	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
X	21363675	X_21363675_SNP [dm3] X_21492648_SNP [dm6]	A	T	3.658e^-4	0.968	INTERGENIC
3R	17083451	3R_17083451_SNP [dm3] 3R_21257729_SNP [dm6]	T	G	3.663e^-4	0.968	INTRON ETHR
3L	12641265	3L_12641265_SNP [dm3] 3L_12648165_SNP [dm6]	G	A	3.664e^-4	0.968	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	22039668	3R_22039668_SNP [dm3] 3R_26213946_SNP [dm6]	A	T	3.666e^-4	0.968	INTERGENIC
3R	17415137	3R_17415137_SNP [dm3] 3R_21589415_SNP [dm6]	A	G	3.675e^-4	0.968	INTRON InR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	7886737	3L_7886737_SNP [dm3] 3L_7893637_SNP [dm6]	T	C	3.676e^-4	0.968	INTRON CG32365	TF binding site mE1_TFBS_cad
2R	6462822	2R_6462822_SNP [dm3] 2R_10575317_SNP [dm6]	C	T	3.705e^-4	0.968	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10246972	2L_10246972_SNP [dm3] 2L_10246972_SNP [dm6]	T	A	3.707e^-4	0.968	UTR_5_PRIME chico DOWNSTREAM CR44995 & 1 other INTRON chico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3L	1409643	3L_1409643_SNP [dm3] 3L_1409643_SNP [dm6]	G	A	3.707e^-4	0.968	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6983299	2R_6983299_SNP [dm3] 2R_11095794_SNP [dm6]	C	T	3.711e^-4	0.968	INTRON luna	TF binding site BDTNP1_TFBS_twi
2L	12623156	2L_12623156_SNP [dm3] 2L_12623156_SNP [dm6]	G	A	3.711e^-4	0.968	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4915900	2L_4915900_SNP [dm3] 2L_4915900_SNP [dm6]	A	T	3.714e^-4	0.968	UPSTREAM hoe1 INTRON hoe1
2L	4915920	2L_4915920_SNP [dm3] 2L_4915920_SNP [dm6]	T	C	3.714e^-4	0.968	UPSTREAM hoe1 INTRON hoe1
2L	15267518	2L_15267518_SNP [dm3] 2L_15267518_SNP [dm6]	A	T	3.717e^-4	0.968	INTRON Cul3
3L	5900255	3L_5900255_SNP [dm3] 3L_5907155_SNP [dm6]	G	A	3.725e^-4	0.968	UPSTREAM CG13288 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	9597819	3R_9597819_SNP [dm3] 3R_13772097_SNP [dm6]	C	T	3.730e^-4	0.968	INTRON CG9297
3L	12050013	3L_12050013_SNP [dm3] 3L_12056913_SNP [dm6]	C	T	3.738e^-4	0.968	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22068415	3R_22068415_SNP [dm3] 3R_26242693_SNP [dm6]	A	T	3.751e^-4	0.968	INTRON CR42745
3R	20500482	3R_20500482_SNP [dm3] 3R_24674760_SNP [dm6]	C	T	3.753e^-4	0.968	INTRON slo
X	14322413	X_14322413_SNP [dm3] X_14428380_SNP [dm6]	T	C	3.754e^-4	0.968	INTRON dpr8
2R	19191755	2R_19191755_SNP [dm3] 2R_23304232_SNP [dm6]	G	T	3.756e^-4	0.968	INTERGENIC
2L	658032	2L_658032_SNP [dm3] 2L_658032_SNP [dm6]	C	T	3.757e^-4	0.968	INTRON ds
2R	13633716	2R_13633716_SNP [dm3] 2R_17746211_SNP [dm6]	T	C	3.762e^-4	0.968	SYNONYMOUS_CODING sub DOWNSTREAM Ir54a
X	571471	X_571471_SNP [dm3] X_677438_SNP [dm6]	T	C	3.764e^-4	0.968	INTERGENIC
2R	5733928	2R_5733928_SNP [dm3] 2R_9846423_SNP [dm6]	C	A	3.766e^-4	0.968	START_GAINED Orc6 UTR_5_PRIME Orc6 DOWNSTREAM CG1667 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	18004347	3L_18004347_SNP [dm3] 3L_18011247_SNP [dm6]	C	T	3.767e^-4	0.968	INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16126116	2R_16126116_SNP [dm3] 2R_20238611_SNP [dm6]	G	T	3.768e^-4	0.968	NON_SYNONYMOUS_CODING CG13869 UTR_3_PRIME CG11099
2L	8370580	2L_8370580_SNP [dm3] 2L_8370580_SNP [dm6]	G	T	3.779e^-4	0.969	UTR_5_PRIME CG17292 DOWNSTREAM Pp2A-29B EXON CR45341
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	3.785e^-4	0.969	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	14305500	X_14305500_SNP [dm3] X_14411467_SNP [dm6]	G	A	3.788e^-4	0.969	INTRON dpr8
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	3.791e^-4	0.969	INTRON Octbeta3R
2R	16849666	2R_16849666_SNP [dm3] 2R_20962161_SNP [dm6]	A	G	3.804e^-4	0.971	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18189961	2R_18189961_SNP [dm3] 2R_22302456_SNP [dm6]	T	C	3.814e^-4	0.972	INTRON wdp	TF binding site BDTNP1_TFBS_da
3R	17908299	3R_17908299_SNP [dm3] 3R_22082577_SNP [dm6]	A	T	3.836e^-4	0.973	INTRON CG13408
2R	5008245	2R_5008245_SNP [dm3] 2R_9120740_SNP [dm6]	C	T	3.838e^-4	0.973	UTR_3_PRIME Su_var_2-10 DOWNSTREAM Su_var_2-10 INTRON Su_var_2-10
3R	22901833	3R_22901833_SNP [dm3] 3R_27076111_SNP [dm6]	G	T	3.843e^-4	0.973	UTR_5_PRIME CG14257	TF binding site mE1_TFBS_Trl
2L	4917167	2L_4917167_SNP [dm3] 2L_4917167_SNP [dm6]	C	T	3.851e^-4	0.973	INTRON hoe1
3R	8560530	3R_8560530_SNP [dm3] 3R_12734808_SNP [dm6]	A	G	3.852e^-4	0.973	INTERGENIC
3R	3837754	3R_3837754_SNP [dm3] 3R_8012032_SNP [dm6]	A	G	3.858e^-4	0.973	INTRON CG10435
2L	7801656	2L_7801656_INS [dm3] 2L_7801656_INS [dm6]	T	TT	3.859e^-4	0.973	UTR_3_PRIME r2d2 DOWNSTREAM cdc14 & 1 other
3L	8647936	3L_8647936_SNP [dm3] 3L_8654836_SNP [dm6]	G	A	3.872e^-4	0.973	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb mE1_TFBS_cad
3L	8535515	3L_8535515_SNP [dm3] 3L_8542415_SNP [dm6]	A	T	3.889e^-4	0.973	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14547262	2R_14547262_SNP [dm3] 2R_18659757_SNP [dm6]	C	T	3.890e^-4	0.973	SYNONYMOUS_CODING Gint3 UTR_3_PRIME CG42306	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1136887	2R_1136887_SNP [dm3] 2R_5249382_SNP [dm6]	A	G	3.895e^-4	0.973	INTRON Nipped-A	transposable element FlyBase
3L	5757272	3L_5757272_SNP [dm3] 3L_5764172_SNP [dm6]	A	T	3.909e^-4	0.973	UPSTREAM snoRNA:684 & 1 other DOWNSTREAM snoRNA:Psi28S-1837a & 1 other INTRON CG10576 EXON snoRNA:Psi28S-1837b	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3L	5757273	3L_5757273_SNP [dm3] 3L_5764173_SNP [dm6]	A	T	3.909e^-4	0.973	UPSTREAM snoRNA:684 & 1 other DOWNSTREAM snoRNA:Psi28S-1837a & 1 other INTRON CG10576 EXON snoRNA:Psi28S-1837b	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
X	17342095	X_17342095_SNP [dm3] X_17448062_SNP [dm6]	G	C	3.910e^-4	0.973	SYNONYMOUS_CODING p-cup DOWNSTREAM CG8568	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	4911521	2L_4911521_DEL [dm3] 2L_4911521_DEL [dm6]	TA	C	3.912e^-4	0.973	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14272325	2L_14272325_SNP [dm3] 2L_14272325_SNP [dm6]	T	C	3.931e^-4	0.973	INTRON wb
X	14770722	X_14770722_SNP [dm3] X_14876689_SNP [dm6]	A	G	3.931e^-4	0.973	SYNONYMOUS_CODING CG45065 UTR_3_PRIME CG45064 INTRON Flo2
2L	6523432	2L_6523432_SNP [dm3] 2L_6523432_SNP [dm6]	A	G	3.939e^-4	0.973	INTRON CG31637
3L	17767396	3L_17767396_SNP [dm3] 3L_17774296_SNP [dm6]	A	G	3.944e^-4	0.973	INTERGENIC
3L	5897301	3L_5897301_SNP [dm3] 3L_5904201_SNP [dm6]	G	T	3.952e^-4	0.973	UPSTREAM CG32413 DOWNSTREAM CG10486 INTERGENIC
2L	8365667	2L_8365667_SNP [dm3] 2L_8365667_SNP [dm6]	T	C	3.954e^-4	0.973	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	15716377	2R_15716377_SNP [dm3] 2R_19828872_SNP [dm6]	A	G	3.965e^-4	0.973	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4244990	X_4244990_SNP [dm3] X_4350957_SNP [dm6]	G	C	3.969e^-4	0.973	INTRON norpA
2L	14101912	2L_14101912_SNP [dm3] 2L_14101912_SNP [dm6]	T	G	3.972e^-4	0.973	INTERGENIC
2R	8242061	2R_8242061_SNP [dm3] 2R_12354556_SNP [dm6]	A	T	3.976e^-4	0.973	INTRON CG30047	TF binding site mE1_TFBS_sens
3L	1938701	3L_1938701_SNP [dm3] 3L_1938701_SNP [dm6]	T	C	3.977e^-4	0.973	UTR_5_PRIME CG5687 DOWNSTREAM CR44536
3R	21200952	3R_21200952_SNP [dm3] 3R_25375230_SNP [dm6]	G	A	3.978e^-4	0.973	INTRON Fur1
3R	22068424	3R_22068424_SNP [dm3] 3R_26242702_SNP [dm6]	G	A	3.978e^-4	0.973	INTRON CR42745
3R	23888819	3R_23888819_DEL [dm3] 3R_28063097_DEL [dm6]	ATTTCAGCATGA...	A	3.978e^-4	0.973	INTRON CG34362
2L	4912425	2L_4912425_SNP [dm3] 2L_4912425_SNP [dm6]	T	A	3.980e^-4	0.973	INTRON hoe1
3L	17767400	3L_17767400_SNP [dm3] 3L_17774300_SNP [dm6]	A	G	3.987e^-4	0.973	INTERGENIC
2L	13113814	2L_13113814_SNP [dm3] 2L_13113814_SNP [dm6]	T	A	4.001e^-4	0.973	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15873261	3R_15873261_SNP [dm3] 3R_20047539_SNP [dm6]	C	G	4.006e^-4	0.973	SPLICE_SITE_REGION Indy-2 & 1 other INTRON CG17193 & 2 others
3R	13817410	3R_13817410_SNP [dm3] 3R_17991688_SNP [dm6]	A	T	4.015e^-4	0.973	INTRON cpo
2L	4734410	2L_4734410_SNP [dm3] 2L_4734410_SNP [dm6]	T	C	4.019e^-4	0.973	NON_SYNONYMOUS_CODING CG15631 UTR_5_PRIME CG15631 DOWNSTREAM CG15630
2R	8661865	2R_8661865_SNP [dm3] 2R_12774360_SNP [dm6]	T	C	4.022e^-4	0.973	INTERGENIC
2L	4916065	2L_4916065_SNP [dm3] 2L_4916065_SNP [dm6]	G	T	4.024e^-4	0.973	UPSTREAM hoe1 INTRON hoe1
2R	13049282	2R_13049282_SNP [dm3] 2R_17161777_SNP [dm6]	G	A	4.024e^-4	0.973	UPSTREAM CG30457 INTERGENIC
3R	25210370	3R_25210370_SNP [dm3] 3R_29384648_SNP [dm6]	G	T	4.025e^-4	0.973	INTRON Ptp99A
3R	14771392	3R_14771392_SNP [dm3] 3R_18945670_SNP [dm6]	T	A	4.029e^-4	0.973	INTRON CG42613
3L	651081	3L_651081_SNP [dm3] 3L_651081_SNP [dm6]	C	T	4.038e^-4	0.973	SYNONYMOUS_CODING Gale DOWNSTREAM CG3402	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8535439	3L_8535439_SNP [dm3] 3L_8542339_SNP [dm6]	G	A	4.041e^-4	0.973	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5730387	2R_5730387_SNP [dm3] 2R_9842882_SNP [dm6]	G	A	4.046e^-4	0.973	UPSTREAM Vamp7 & 1 other INTRON CG1667	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	14049701	X_14049701_SNP [dm3] X_14155668_SNP [dm6]	C	T	4.049e^-4	0.973	INTERGENIC
2L	701070	2L_701070_SNP [dm3] 2L_701070_SNP [dm6]	A	G	4.049e^-4	0.973	INTRON ds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	991771	2L_991771_SNP [dm3] 2L_991771_SNP [dm6]	T	C	4.067e^-4	0.973	UPSTREAM CR44801 INTERGENIC
X	10331704	X_10331704_DEL [dm3] X_10437671_DEL [dm6]	TT	T	4.069e^-4	0.973	INTRON CG32683
2R	13160227	2R_13160227_SNP [dm3] 2R_17272722_SNP [dm6]	G	A	4.071e^-4	0.973	INTRON mbl
3R	19145444	3R_19145444_SNP [dm3] 3R_23319722_SNP [dm6]	G	C	4.083e^-4	0.973	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	14081080	2R_14081080_SNP [dm3] 2R_18193575_SNP [dm6]	C	T	4.083e^-4	0.973	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	2358539	X_2358539_SNP [dm3] X_2464506_SNP [dm6]	A	T	4.094e^-4	0.973	INTRON boi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	4463893	X_4463893_SNP [dm3] X_4569860_SNP [dm6]	T	G	4.097e^-4	0.973	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	16804397	2R_16804397_DEL [dm3] 2R_20916892_DEL [dm6]	TC	T	4.102e^-4	0.973	UTR_5_PRIME Rx	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5188939	3R_5188939_SNP [dm3] 3R_9363217_SNP [dm6]	T	C	4.104e^-4	0.973	UPSTREAM CG18473 DOWNSTREAM CG45050 INTERGENIC
2L	4938205	2L_4938205_MNP [dm3] 2L_4938205_MNP [dm6]	CGC	TCT	4.108e^-4	0.973	NON_SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12050021	3L_12050021_SNP [dm3] 3L_12056921_SNP [dm6]	T	C	4.125e^-4	0.973	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3346329	2R_3346329_SNP [dm3] 2R_7458824_SNP [dm6]	A	G	4.125e^-4	0.973	UTR_5_PRIME Inos DOWNSTREAM CG11141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	12249089	2L_12249089_SNP [dm3] 2L_12249089_SNP [dm6]	A	C	4.151e^-4	0.973	INTRON aret
3R	3855740	3R_3855740_SNP [dm3] 3R_8030018_SNP [dm6]	C	T	4.151e^-4	0.973	UPSTREAM CG10903 & 1 other INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	1720542	2R_1720542_SNP [dm3] 2R_5833037_SNP [dm6]	C	A	4.156e^-4	0.973	INTRON dpr12
2L	4911991	2L_4911991_SNP [dm3] 2L_4911991_SNP [dm6]	G	T	4.166e^-4	0.973	INTRON hoe1	TF binding site mE1_TFBS_chinmo
2R	1816681	2R_1816681_SNP [dm3] 2R_5929176_SNP [dm6]	A	T	4.175e^-4	0.973	SYNONYMOUS_CODING CG43366
3R	24607848	3R_24607848_SNP [dm3] 3R_28782126_SNP [dm6]	A	T	4.176e^-4	0.973	INTERGENIC
3L	8192651	3L_8192651_INS [dm3] 3L_8199551_INS [dm6]	G	GTCCGG	4.180e^-4	0.973	DOWNSTREAM CG8005 INTERGENIC
3L	3260535	3L_3260535_SNP [dm3] 3L_3260535_SNP [dm6]	C	A	4.183e^-4	0.973	INTRON ckd
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	4.189e^-4	0.973	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	4.189e^-4	0.973	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13802394	3R_13802394_SNP [dm3] 3R_17976672_SNP [dm6]	C	G	4.191e^-4	0.973	INTRON cpo
2R	1848498	2R_1848498_SNP [dm3] 2R_5960993_SNP [dm6]	A	G	4.204e^-4	0.973	UTR_3_PRIME CG7881 DOWNSTREAM CG7881 & 1 other
2L	8561022	2L_8561022_INS [dm3] 2L_8561022_INS [dm6]	T	TG	4.210e^-4	0.973	INTRON Sema-1a
3L	2941866	3L_2941866_SNP [dm3] 3L_2941866_SNP [dm6]	T	C	4.211e^-4	0.973	INTRON Shab
2L	8744349	2L_8744349_SNP [dm3] 2L_8744349_SNP [dm6]	G	A	4.212e^-4	0.973	INTERGENIC
2R	5036712	2R_5036712_DEL [dm3] 2R_9149207_DEL [dm6]	TA	T	4.220e^-4	0.973	DOWNSTREAM CG30344 INTRON CG30345
2L	9315700	2L_9315700_SNP [dm3] 2L_9315700_SNP [dm6]	C	T	4.221e^-4	0.973	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8719323	X_8719323_SNP [dm3] X_8825290_SNP [dm6]	A	T	4.223e^-4	0.973	INTERGENIC
2L	2865463	2L_2865463_SNP [dm3] 2L_2865463_SNP [dm6]	C	G	4.223e^-4	0.973	INTRON CG2991	TF binding site BDTNP1_TFBS_da
2R	18253694	2R_18253694_SNP [dm3] 2R_22366189_SNP [dm6]	A	G	4.230e^-4	0.973	INTRON Liprin-gamma
2R	3552845	2R_3552845_SNP [dm3] 2R_7665340_SNP [dm6]	A	G	4.234e^-4	0.973	UPSTREAM CG2064 DOWNSTREAM CG2065 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	2311679	3L_2311679_SNP [dm3] 3L_2311679_SNP [dm6]	T	C	4.240e^-4	0.973	INTERGENIC
2R	18422308	2R_18422308_SNP [dm3] 2R_22534803_SNP [dm6]	G	A	4.246e^-4	0.973	INTRON px
2R	5748761	2R_5748761_SNP [dm3] 2R_9861256_SNP [dm6]	G	A	4.249e^-4	0.973	UPSTREAM CG1516 INTRON CG1516 EXON CR44293	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8360052	2L_8360052_SNP [dm3] 2L_8360052_SNP [dm6]	C	T	4.261e^-4	0.973	INTRON CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1014294	3L_1014294_SNP [dm3] 3L_1014294_SNP [dm6]	G	T	4.262e^-4	0.973	INTRON trio
2L	9315698	2L_9315698_SNP [dm3] 2L_9315698_SNP [dm6]	T	G	4.267e^-4	0.973	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17146947	X_17146947_INS [dm3] X_17252914_INS [dm6]	A	AA	4.274e^-4	0.973	INTRON f	TF binding site BDTNP1_TFBS_twi
2L	2517298	2L_2517298_SNP [dm3] 2L_2517298_SNP [dm6]	G	C	4.275e^-4	0.973	SYNONYMOUS_CODING CG3528
3L	12050010	3L_12050010_SNP [dm3] 3L_12056910_SNP [dm6]	A	C	4.276e^-4	0.973	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12050072	3L_12050072_SNP [dm3] 3L_12056972_SNP [dm6]	T	C	4.276e^-4	0.973	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6520724	X_6520724_DEL [dm3] X_6626691_DEL [dm6]	GA	T	4.279e^-4	0.973	INTRON pigs
2L	555042	2L_555042_SNP [dm3] 2L_555042_SNP [dm6]	G	A	4.293e^-4	0.973	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad
2L	556131	2L_556131_SNP [dm3] 2L_556131_SNP [dm6]	G	A	4.293e^-4	0.973	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13872175	X_13872175_SNP [dm3] X_13978142_SNP [dm6]	A	G	4.295e^-4	0.973	INTRON mamo
2R	9755459	2R_9755459_SNP [dm3] 2R_13867954_SNP [dm6]	T	A	4.300e^-4	0.973	INTRON shot
2L	810779	2L_810779_SNP [dm3] 2L_810779_SNP [dm6]	A	G	4.316e^-4	0.975	UPSTREAM Dbp21E2 INTRON Nnf1b
2L	8744381	2L_8744381_SNP [dm3] 2L_8744381_SNP [dm6]	G	A	4.324e^-4	0.975	INTERGENIC
2R	16996889	2R_16996889_SNP [dm3] 2R_21109384_SNP [dm6]	C	T	4.325e^-4	0.975	INTRON ktub
2L	15029924	2L_15029924_SNP [dm3] 2L_15029924_SNP [dm6]	C	T	4.331e^-4	0.975	DOWNSTREAM CG33310 INTRON GABA-B-R1
2L	12753969	2L_12753969_SNP [dm3] 2L_12753969_SNP [dm6]	A	C	4.339e^-4	0.975	INTERGENIC
X	21149683	X_21149683_SNP [dm3] X_21278656_SNP [dm6]	C	G	4.347e^-4	0.975	INTRON CG32521
2L	11934586	2L_11934586_SNP [dm3] 2L_11934586_SNP [dm6]	G	A	4.358e^-4	0.975	NON_SYNONYMOUS_CODING Or33a
2L	8359580	2L_8359580_DEL [dm3] 2L_8359580_DEL [dm6]	AA	A	4.361e^-4	0.975	INTRON CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3218462	3L_3218462_SNP [dm3] 3L_3218462_SNP [dm6]	G	A	4.366e^-4	0.975	SYNONYMOUS_CODING CG14967 UPSTREAM CG12034	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3342053	2R_3342053_SNP [dm3] 2R_7454548_SNP [dm6]	G	T	4.366e^-4	0.975	DOWNSTREAM Inos INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13133858	2R_13133858_SNP [dm3] 2R_17246353_SNP [dm6]	G	C	4.367e^-4	0.975	UPSTREAM CG18469 DOWNSTREAM CG12699 INTRON mbl
3R	10079180	3R_10079180_SNP [dm3] 3R_14253458_SNP [dm6]	T	C	4.376e^-4	0.975	INTRON Aats-met
X	13619779	X_13619779_SNP [dm3] X_13725746_SNP [dm6]	A	G	4.379e^-4	0.975	SYNONYMOUS_CODING mus101	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16225053	2R_16225053_SNP [dm3] 2R_20337548_SNP [dm6]	A	T	4.396e^-4	0.975	INTERGENIC
X	17467077	X_17467077_SNP [dm3] X_17573044_SNP [dm6]	G	T	4.398e^-4	0.975	SYNONYMOUS_CODING l_1_G0222	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5021257	2R_5021257_SNP [dm3] 2R_9133752_SNP [dm6]	C	T	4.402e^-4	0.975	SYNONYMOUS_CODING Hydr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18563878	2R_18563878_SNP [dm3] 2R_22676373_SNP [dm6]	A	G	4.412e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	2635196	2R_2635196_SNP [dm3] 2R_6747691_SNP [dm6]	T	G	4.421e^-4	0.975	NON_SYNONYMOUS_CODING CG3267	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1783957	2R_1783957_SNP [dm3] 2R_5896452_SNP [dm6]	G	A	4.424e^-4	0.975	INTRON CG43366	TF binding site mE1_TFBS_chinmo
2R	5779779	2R_5779779_SNP [dm3] 2R_9892274_SNP [dm6]	G	T	4.436e^-4	0.975	NON_SYNONYMOUS_CODING CG30007 UPSTREAM CG1513	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7801712	2L_7801712_INS [dm3] 2L_7801712_INS [dm6]	A	AGA	4.444e^-4	0.975	UTR_3_PRIME r2d2 & 1 other DOWNSTREAM cdc14 & 1 other
2R	5732852	2R_5732852_SNP [dm3] 2R_9845347_SNP [dm6]	A	G	4.445e^-4	0.975	UTR_3_PRIME CG1667 DOWNSTREAM Orc6
3L	12630168	3L_12630168_SNP [dm3] 3L_12637068_SNP [dm6]	C	T	4.446e^-4	0.975	INTRON CR32111
3L	6275627	3L_6275627_SNP [dm3] 3L_6282527_SNP [dm6]	C	T	4.450e^-4	0.975	INTERGENIC
2L	710224	2L_710224_SNP [dm3] 2L_710224_SNP [dm6]	T	A	4.451e^-4	0.975	UPSTREAM CR44988 INTRON ds
2R	3552846	2R_3552846_SNP [dm3] 2R_7665341_SNP [dm6]	A	G	4.453e^-4	0.975	UPSTREAM CG2064 DOWNSTREAM CG2065 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	17414934	3R_17414934_SNP [dm3] 3R_21589212_SNP [dm6]	T	A	4.461e^-4	0.975	INTRON InR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19489003	2R_19489003_SNP [dm3] 2R_23601480_SNP [dm6]	T	C	4.463e^-4	0.975	SPLICE_SITE_REGION CG10332 & 1 other SYNONYMOUS_CODING CG10332 UTR_5_PRIME IM18 UPSTREAM CG42559 & 2 others DOWNSTREAM CG43209	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	25466475	3R_25466475_SNP [dm3] 3R_29640753_SNP [dm6]	G	A	4.466e^-4	0.975	SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_chinmo
3R	11649695	3R_11649695_SNP [dm3] 3R_15823973_SNP [dm6]	A	G	4.474e^-4	0.975	UTR_3_PRIME alpha-Man-IIb & 1 other DOWNSTREAM rec
2R	1675012	2R_1675012_SNP [dm3] 2R_5787507_SNP [dm6]	T	C	4.475e^-4	0.975	INTERGENIC
2L	17029533	2L_17029533_SNP [dm3] 2L_17029533_SNP [dm6]	A	T	4.476e^-4	0.975	INTERGENIC
2R	5731331	2R_5731331_SNP [dm3] 2R_9843826_SNP [dm6]	T	A	4.488e^-4	0.975	NON_SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	8375294	2L_8375294_SNP [dm3] 2L_8375294_SNP [dm6]	C	T	4.490e^-4	0.975	SYNONYMOUS_CODING Wdr82 DOWNSTREAM CG13390	TF binding site mE1_TFBS_sens
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	4.490e^-4	0.975	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9315682	2L_9315682_SNP [dm3] 2L_9315682_SNP [dm6]	G	A	4.497e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1453513	3L_1453513_DEL [dm3] 3L_1453513_DEL [dm6]	GACCA	G	4.506e^-4	0.976	INTRON Ptp61F
3R	9315746	3R_9315746_SNP [dm3] 3R_13490024_SNP [dm6]	T	C	4.511e^-4	0.976	INTERGENIC
3R	12495036	3R_12495036_SNP [dm3] 3R_16669314_SNP [dm6]	A	T	4.528e^-4	0.976	INTRON Ubx
X	16079430	X_16079430_SNP [dm3] X_16185397_SNP [dm6]	A	T	4.533e^-4	0.976	INTERGENIC
2R	1673510	2R_1673510_SNP [dm3] 2R_5786005_SNP [dm6]	G	A	4.534e^-4	0.976	INTERGENIC	transposable element FlyBase
2R	15404899	2R_15404899_SNP [dm3] 2R_19517394_SNP [dm6]	G	A	4.540e^-4	0.976	DOWNSTREAM sm INTERGENIC
3L	15501656	3L_15501656_SNP [dm3] 3L_15508556_SNP [dm6]	C	A	4.552e^-4	0.976	UPSTREAM Z600 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18442993	3L_18442993_SNP [dm3] 3L_18449893_SNP [dm6]	A	T	4.558e^-4	0.976	INTERGENIC
2L	8358428	2L_8358428_SNP [dm3] 2L_8358428_SNP [dm6]	C	G	4.562e^-4	0.976	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_twi
2L	8188934	2L_8188934_SNP [dm3] 2L_8188934_SNP [dm6]	A	T	4.564e^-4	0.976	SPLICE_SITE_REGION Piezo SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6339757	2R_6339757_SNP [dm3] 2R_10452252_SNP [dm6]	T	G	4.568e^-4	0.976	INTRON Galphao & 1 other
X	18943249	X_18943249_SNP [dm3] X_19049216_SNP [dm6]	G	A	4.568e^-4	0.976	INTERGENIC
2R	13105540	2R_13105540_SNP [dm3] 2R_17218035_SNP [dm6]	G	C	4.573e^-4	0.976	INTRON mbl
3L	16583798	3L_16583798_SNP [dm3] 3L_16590698_SNP [dm6]	C	T	4.579e^-4	0.976	NON_SYNONYMOUS_CODING tra UTR_3_PRIME tra DOWNSTREAM l_3_73Ah & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8224915	3R_8224915_SNP [dm3] 3R_12399193_SNP [dm6]	A	T	4.593e^-4	0.976	SYNONYMOUS_CODING lig3 UPSTREAM Cyp9f3Psi INTRON CG34402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2769453	X_2769453_SNP [dm3] X_2875420_SNP [dm6]	T	C	4.604e^-4	0.976	DOWNSTREAM CG14417 INTRON kirre
2L	760957	2L_760957_SNP [dm3] 2L_760957_SNP [dm6]	T	C	4.609e^-4	0.976	UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo
2L	5424902	2L_5424902_SNP [dm3] 2L_5424902_SNP [dm6]	A	T	4.617e^-4	0.976	INTERGENIC
3L	21810650	3L_21810650_SNP [dm3] 3L_21817550_SNP [dm6]	T	G	4.620e^-4	0.976	UTR_3_PRIME eg
2L	855208	2L_855208_DEL [dm3] 2L_855208_DEL [dm6]	AGGGTT	A	4.620e^-4	0.976	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	5732741	2R_5732741_SNP [dm3] 2R_9845236_SNP [dm6]	A	T	4.620e^-4	0.976	DOWNSTREAM Orc6 INTRON CG1667
2R	15967265	2R_15967265_SNP [dm3] 2R_20079760_SNP [dm6]	T	A	4.627e^-4	0.976	INTERGENIC
2L	9315549	2L_9315549_SNP [dm3] 2L_9315549_SNP [dm6]	G	A	4.635e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15267474	2L_15267474_SNP [dm3] 2L_15267474_SNP [dm6]	C	A	4.636e^-4	0.976	SPLICE_SITE_REGION Cul3 INTRON Cul3
2R	8736836	2R_8736836_SNP [dm3] 2R_12849331_SNP [dm6]	C	A	4.646e^-4	0.976	UPSTREAM CG30486 DOWNSTREAM CG17574 & 1 other INTERGENIC
3L	1198495	3L_1198495_DEL [dm3] 3L_1198495_DEL [dm6]	TC	T	4.650e^-4	0.976	INTRON Aplip1
2R	14278177	2R_14278177_SNP [dm3] 2R_18390672_SNP [dm6]	T	A	4.661e^-4	0.976	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3R	23237697	3R_23237697_SNP [dm3] 3R_27411975_SNP [dm6]	T	C	4.661e^-4	0.976	INTRON side
3R	9499398	3R_9499398_SNP [dm3] 3R_13673676_SNP [dm6]	A	G	4.666e^-4	0.976	UTR_5_PRIME Task6 INTRON Task6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	12565484	2R_12565484_SNP [dm3] 2R_16677979_SNP [dm6]	T	C	4.669e^-4	0.976	INTRON CG30463
3L	18458761	3L_18458761_SNP [dm3] 3L_18465661_SNP [dm6]	C	A	4.671e^-4	0.976	INTERGENIC
2R	18232131	2R_18232131_SNP [dm3] 2R_22344626_SNP [dm6]	A	T	4.677e^-4	0.976	INTRON Liprin-gamma
3R	24931096	3R_24931096_SNP [dm3] 3R_29105374_SNP [dm6]	C	A	4.683e^-4	0.976	NON_SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14222040	2R_14222040_INS [dm3] 2R_18334535_INS [dm6]	A	AAAATCACATA...	4.690e^-4	0.976	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	4.692e^-4	0.976	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	12016744	2R_12016744_DEL [dm3] 2R_16129239_DEL [dm6]	TCATT	T	4.697e^-4	0.976	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	4734411	2L_4734411_SNP [dm3] 2L_4734411_SNP [dm6]	G	T	4.699e^-4	0.976	NON_SYNONYMOUS_CODING CG15631 UTR_5_PRIME CG15631 DOWNSTREAM CG15630
2R	16450315	2R_16450315_SNP [dm3] 2R_20562810_SNP [dm6]	A	T	4.705e^-4	0.976	UPSTREAM Mgat1 DOWNSTREAM qsm & 1 other INTRON CG43308	TF binding site BDTNP1_TFBS_dl
2L	20956106	2L_20956106_SNP [dm3] 2L_20956106_SNP [dm6]	T	G	4.712e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9730982	2R_9730982_SNP [dm3] 2R_13843477_SNP [dm6]	A	T	4.712e^-4	0.976	INTRON Syngr
2L	749735	2L_749735_SNP [dm3] 2L_749735_SNP [dm6]	G	T	4.713e^-4	0.976	UPSTREAM GABA-B-R3 INTERGENIC
3R	23040506	3R_23040506_SNP [dm3] 3R_27214784_SNP [dm6]	A	G	4.747e^-4	0.982	INTERGENIC
2L	3195593	2L_3195593_SNP [dm3] 2L_3195593_SNP [dm6]	C	G	4.760e^-4	0.983	INTRON CG34393
2L	585817	2L_585817_SNP [dm3] 2L_585817_SNP [dm6]	G	C	4.771e^-4	0.983	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	8700795	2R_8700795_SNP [dm3] 2R_12813290_SNP [dm6]	A	G	4.771e^-4	0.983	INTERGENIC
3R	22275373	3R_22275373_SNP [dm3] 3R_26449651_SNP [dm6]	A	T	4.779e^-4	0.983	SYNONYMOUS_CODING Hex-t1 DOWNSTREAM tx	TF binding site mE1_TFBS_sens
2R	8629962	2R_8629962_SNP [dm3] 2R_12742457_SNP [dm6]	G	C	4.792e^-4	0.983	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15070575	2R_15070575_SNP [dm3] 2R_19183070_SNP [dm6]	A	T	4.793e^-4	0.983	INTRON hppy
2L	749727	2L_749727_SNP [dm3] 2L_749727_SNP [dm6]	C	A	4.803e^-4	0.983	UPSTREAM GABA-B-R3 INTERGENIC
2L	8372156	2L_8372156_SNP [dm3] 2L_8372156_SNP [dm6]	C	A	4.806e^-4	0.983	UPSTREAM CG17292 INTRON CG17292
3L	15503634	3L_15503634_SNP [dm3] 3L_15510534_SNP [dm6]	A	T	4.809e^-4	0.983	UPSTREAM Eip71CD INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	20527259	2L_20527259_DEL [dm3] 2L_20527259_DEL [dm6]	CTAGC	C	4.818e^-4	0.983	INTERGENIC
3L	14174616	3L_14174616_SNP [dm3] 3L_14181516_SNP [dm6]	T	C	4.822e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16042930	2R_16042930_SNP [dm3] 2R_20155425_SNP [dm6]	G	C	4.823e^-4	0.983	INTERGENIC
3R	8253437	3R_8253437_SNP [dm3] 3R_12427715_SNP [dm6]	C	T	4.835e^-4	0.983	NON_SYNONYMOUS_CODING Sas DOWNSTREAM CG5641	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	860625	2L_860625_SNP [dm3] 2L_860625_SNP [dm6]	C	T	4.838e^-4	0.983	INTRON CG13950	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	8661893	2R_8661893_SNP [dm3] 2R_12774388_SNP [dm6]	T	A	4.838e^-4	0.983	INTERGENIC
3L	10729093	3L_10729093_SNP [dm3] 3L_10735993_SNP [dm6]	C	T	4.849e^-4	0.983	INTERGENIC
X	3178374	X_3178374_SNP [dm3] X_3284341_SNP [dm6]	T	G	4.851e^-4	0.983	INTRON dnc
2L	6523444	2L_6523444_SNP [dm3] 2L_6523444_SNP [dm6]	T	C	4.853e^-4	0.983	INTRON CG31637
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	4.854e^-4	0.983	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	5385778	2L_5385778_SNP [dm3] 2L_5385778_SNP [dm6]	T	A	4.861e^-4	0.984	INTERGENIC
3R	15375280	3R_15375280_SNP [dm3] 3R_19549558_SNP [dm6]	G	A	4.868e^-4	0.984	INTRON Dys
2R	15967091	2R_15967091_SNP [dm3] 2R_20079586_SNP [dm6]	T	C	4.890e^-4	0.984	INTERGENIC
2R	16450317	2R_16450317_SNP [dm3] 2R_20562812_SNP [dm6]	A	G	4.891e^-4	0.984	UPSTREAM Mgat1 DOWNSTREAM qsm & 1 other INTRON CG43308	TF binding site BDTNP1_TFBS_dl
3L	12641249	3L_12641249_SNP [dm3] 3L_12648149_SNP [dm6]	A	G	4.909e^-4	0.984	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	5733815	2R_5733815_SNP [dm3] 2R_9846310_SNP [dm6]	A	C	4.914e^-4	0.984	DOWNSTREAM CG1667 & 1 other INTRON Orc6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	658234	2L_658234_SNP [dm3] 2L_658234_SNP [dm6]	G	A	4.915e^-4	0.984	INTRON ds
3L	5881657	3L_5881657_SNP [dm3] 3L_5888557_SNP [dm6]	G	T	4.920e^-4	0.984	INTERGENIC
3L	592860	3L_592860_SNP [dm3] 3L_592860_SNP [dm6]	C	A	4.923e^-4	0.984	UPSTREAM MED14 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	11217982	X_11217982_SNP [dm3] X_11323949_SNP [dm6]	C	T	4.925e^-4	0.984	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	6960239	2L_6960239_SNP [dm3] 2L_6960239_SNP [dm6]	C	G	4.938e^-4	0.984	NON_SYNONYMOUS_CODING Atac1 UPSTREAM CG10399	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6960247	2L_6960247_SNP [dm3] 2L_6960247_SNP [dm6]	T	G	4.938e^-4	0.984	NON_SYNONYMOUS_CODING Atac1 UPSTREAM CG10399	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11559309	X_11559309_SNP [dm3] X_11665276_SNP [dm6]	C	T	4.947e^-4	0.984	INTRON Ptp10D
3R	26035185	3R_26035185_SNP [dm3] 3R_30209463_SNP [dm6]	A	T	4.951e^-4	0.984	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	4940942	2R_4940942_DEL [dm3] 2R_9053437_DEL [dm6]	AA	A	4.955e^-4	0.984	INTRON CG13743	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4012605	2L_4012605_SNP [dm3] 2L_4012605_SNP [dm6]	G	C	4.956e^-4	0.984	INTERGENIC
2R	14086470	2R_14086470_SNP [dm3] 2R_18198965_SNP [dm6]	A	T	4.960e^-4	0.984	INTERGENIC
3L	14231828	3L_14231828_SNP [dm3] 3L_14238728_SNP [dm6]	G	T	4.966e^-4	0.984	DOWNSTREAM CG7906 EXON CR45399
2R	10537378	2R_10537378_SNP [dm3] 2R_14649873_SNP [dm6]	G	A	4.968e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9200835	X_9200835_SNP [dm3] X_9306802_SNP [dm6]	C	T	4.968e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	12664432	2R_12664432_SNP [dm3] 2R_16776927_SNP [dm6]	A	G	4.971e^-4	0.984	INTERGENIC
2L	19640738	2L_19640738_SNP [dm3] 2L_19640738_SNP [dm6]	C	A	4.974e^-4	0.984	INTRON Lar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2530617	2L_2530617_SNP [dm3] 2L_2530617_SNP [dm6]	G	A	4.982e^-4	0.984	INTERGENIC
2L	8372570	2L_8372570_SNP [dm3] 2L_8372570_SNP [dm6]	G	A	4.990e^-4	0.984	UTR_5_PRIME CG17292
2R	17000238	2R_17000238_SNP [dm3] 2R_21112733_SNP [dm6]	G	A	4.994e^-4	0.984	INTRON ktub
3R	18161540	3R_18161540_SNP [dm3] 3R_22335818_SNP [dm6]	T	A	4.999e^-4	0.984	INTRON CG5388
2R	13651903	2R_13651903_SNP [dm3] 2R_17764398_SNP [dm6]	T	A	5.007e^-4	0.984	UTR_3_PRIME CG5009 DOWNSTREAM OstDelta
3R	16910020	3R_16910020_SNP [dm3] 3R_21084298_SNP [dm6]	T	A	5.012e^-4	0.984	INTRON RhoGAP93B
2L	707930	2L_707930_SNP [dm3] 2L_707930_SNP [dm6]	C	A	5.012e^-4	0.984	INTRON ds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8236387	3R_8236387_SNP [dm3] 3R_12410665_SNP [dm6]	G	A	5.029e^-4	0.985	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	701226	2L_701226_SNP [dm3] 2L_701226_SNP [dm6]	G	C	5.038e^-4	0.985	INTRON ds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	14185032	X_14185032_SNP [dm3] X_14290999_SNP [dm6]	T	A	5.038e^-4	0.985	INTERGENIC
2L	6051153	2L_6051153_SNP [dm3] 2L_6051153_SNP [dm6]	T	C	5.042e^-4	0.985	DOWNSTREAM CG12393 INTRON CG9135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6051631	2L_6051631_SNP [dm3] 2L_6051631_SNP [dm6]	G	T	5.042e^-4	0.985	UTR_5_PRIME CG9135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	19272706	2L_19272706_SNP [dm3] 2L_19272706_SNP [dm6]	A	G	5.052e^-4	0.985	INTRON CR44190
2R	18241489	2R_18241489_SNP [dm3] 2R_22353984_SNP [dm6]	G	A	5.053e^-4	0.985	INTRON Liprin-gamma
3L	12050127	3L_12050127_SNP [dm3] 3L_12057027_SNP [dm6]	T	A	5.059e^-4	0.985	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17089902	2R_17089902_SNP [dm3] 2R_21202397_SNP [dm6]	T	C	5.061e^-4	0.985	UPSTREAM Glycogenin INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	21149749	X_21149749_SNP [dm3] X_21278722_SNP [dm6]	A	G	5.074e^-4	0.986	INTRON CG32521
2R	16563893	2R_16563893_SNP [dm3] 2R_20676388_SNP [dm6]	C	T	5.077e^-4	0.986	INTERGENIC
3R	14359133	3R_14359133_SNP [dm3] 3R_18533411_SNP [dm6]	A	G	5.084e^-4	0.986	INTRON fru
3L	7451148	3L_7451148_SNP [dm3] 3L_7458048_SNP [dm6]	C	T	5.091e^-4	0.986	INTRON ppk26
3L	12630119	3L_12630119_SNP [dm3] 3L_12637019_SNP [dm6]	G	A	5.110e^-4	0.988	INTRON CR32111
X	11559313	X_11559313_INS [dm3] X_11665280_INS [dm6]	A	AATACTGTTAATA...	5.110e^-4	0.988	INTRON Ptp10D
2L	20956679	2L_20956679_SNP [dm3] 2L_20956679_SNP [dm6]	A	T	5.116e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18461388	3L_18461388_SNP [dm3] 3L_18468288_SNP [dm6]	A	G	5.141e^-4	0.99	INTERGENIC
2R	8610612	2R_8610612_SNP [dm3] 2R_12723107_SNP [dm6]	A	T	5.146e^-4	0.99	INTRON CG42663
2R	9730971	2R_9730971_SNP [dm3] 2R_13843466_SNP [dm6]	C	A	5.155e^-4	0.99	INTRON Syngr
3L	12050114	3L_12050114_SNP [dm3] 3L_12057014_SNP [dm6]	T	C	5.157e^-4	0.99	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4820930	2R_4820930_SNP [dm3] 2R_8933425_SNP [dm6]	A	G	5.159e^-4	0.99	UTR_5_PRIME CG13749 DOWNSTREAM PAN2
2R	4902248	2R_4902248_SNP [dm3] 2R_9014743_SNP [dm6]	T	C	5.167e^-4	0.99	INTRON CG13744
3R	25470250	3R_25470250_SNP [dm3] 3R_29644528_SNP [dm6]	A	C	5.172e^-4	0.99	INTRON Dop1R2
2L	22032380	2L_22032380_SNP [dm3] 2L_22032380_SNP [dm6]	G	A	5.185e^-4	0.99	UPSTREAM CR45335 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	14066630	2R_14066630_SNP [dm3] 2R_18179125_SNP [dm6]	A	T	5.185e^-4	0.99	INTRON CG5726	TF binding site BDTNP1_TFBS_dl
3L	6275615	3L_6275615_INS [dm3] 3L_6282515_INS [dm6]	T	TCCTCTTTTTAG...	5.185e^-4	0.99	INTERGENIC
3L	12050003	3L_12050003_SNP [dm3] 3L_12056903_SNP [dm6]	T	A	5.210e^-4	0.99	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	807061	2L_807061_SNP [dm3] 2L_807061_SNP [dm6]	T	A	5.215e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12050022	3L_12050022_SNP [dm3] 3L_12056922_SNP [dm6]	T	G	5.217e^-4	0.99	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5738442	2R_5738442_SNP [dm3] 2R_9850937_SNP [dm6]	A	G	5.226e^-4	0.99	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
X	3184996	X_3184996_INS [dm3] X_3290963_INS [dm6]	T	TATT	5.237e^-4	0.99	UPSTREAM dnc INTRON dnc
X	14829309	X_14829309_SNP [dm3] X_14935276_SNP [dm6]	A	T	5.241e^-4	0.99	INTRON pdgy
3R	24777235	3R_24777235_SNP [dm3] 3R_28951513_SNP [dm6]	T	C	5.244e^-4	0.99	INTRON CG14521
3L	6333247	3L_6333247_SNP [dm3] 3L_6340147_SNP [dm6]	T	C	5.247e^-4	0.99	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
2R	14771458	2R_14771458_SNP [dm3] 2R_18883953_SNP [dm6]	C	T	5.264e^-4	0.99	INTRON sano
3L	12050047	3L_12050047_SNP [dm3] 3L_12056947_SNP [dm6]	G	C	5.271e^-4	0.99	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19067116	3R_19067116_SNP [dm3] 3R_23241394_SNP [dm6]	G	T	5.272e^-4	0.99	INTRON CG4467
X	4539565	X_4539565_SNP [dm3] X_4645532_SNP [dm6]	G	A	5.276e^-4	0.99	UTR_3_PRIME HLH4C UPSTREAM CG3062	TF binding site mE1_TFBS_chinmo
2R	19611932	2R_19611932_SNP [dm3] 2R_23724409_SNP [dm6]	C	A	5.279e^-4	0.99	INTRON Sesn
2L	12254553	2L_12254553_SNP [dm3] 2L_12254553_SNP [dm6]	G	A	5.285e^-4	0.99	INTRON aret
2R	5664071	2R_5664071_SNP [dm3] 2R_9776566_SNP [dm6]	C	T	5.288e^-4	0.99	DOWNSTREAM CR44207 INTRON CG1688
2L	4915939	2L_4915939_SNP [dm3] 2L_4915939_SNP [dm6]	T	C	5.301e^-4	0.99	UPSTREAM hoe1 INTRON hoe1
3L	13043719	3L_13043719_DEL [dm3] 3L_13050619_DEL [dm6]	TCTTCTAGATATCATTCCTA...	T	5.305e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3987797	3L_3987797_SNP [dm3] 3L_3987797_SNP [dm6]	A	T	5.316e^-4	0.99	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24432088	3R_24432088_SNP [dm3] 3R_28606366_SNP [dm6]	T	C	5.324e^-4	0.99	DOWNSTREAM Hrb98DE INTRON CG9986	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens

Missing results

By genomic position
Variant impact
Gene name

Cuticul_9_C25_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results