DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.320e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.09003

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.7091	0.0949

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1837 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	15808926	2L_15808926_DEL [dm3] 2L_15808926_DEL [dm6]	CACATTGC	C	3.414e^-7	0.413	DOWNSTREAM CR44602 EXON CR44602
3R	23850969	3R_23850969_SNP [dm3] 3R_28025247_SNP [dm6]	G	A	4.405e^-7	0.413	INTERGENIC
X	4437888	X_4437888_SNP [dm3] X_4543855_SNP [dm6]	C	T	1.008e^-6	0.596	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
2R	10527378	2R_10527378_SNP [dm3] 2R_14639873_SNP [dm6]	A	G	1.358e^-6	0.596	DOWNSTREAM CG43236 & 2 others INTERGENIC	TF binding site mE1_TFBS_inv
X	4437897	X_4437897_SNP [dm3] X_4543864_SNP [dm6]	C	G	2.030e^-6	0.596	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
2L	5563182	2L_5563182_SNP [dm3] 2L_5563182_SNP [dm6]	G	A	2.461e^-6	0.596	INTRON GluRIIB	TF binding site mE1_TFBS_cad
3R	14829606	3R_14829606_SNP [dm3] 3R_19003884_SNP [dm6]	A	G	2.480e^-6	0.596	INTRON gukh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15808845	2L_15808845_SNP [dm3] 2L_15808845_SNP [dm6]	G	A	2.541e^-6	0.596	DOWNSTREAM CR44602 EXON CR44602
2R	7743542	2R_7743542_SNP [dm3] 2R_11856037_SNP [dm6]	T	C	3.221e^-6	0.671	SYNONYMOUS_CODING Mtor	TF binding site mE1_TFBS_cad
2L	10040383	2L_10040383_SNP [dm3] 2L_10040383_SNP [dm6]	T	A	3.844e^-6	0.702	INTERGENIC
2R	10527693	2R_10527693_SNP [dm3] 2R_14640188_SNP [dm6]	T	C	5.406e^-6	0.702	DOWNSTREAM CG12862 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14337190	3L_14337190_SNP [dm3] 3L_14344090_SNP [dm6]	A	T	5.984e^-6	0.702	INTRON fz
3R	23560286	3R_23560286_SNP [dm3] 3R_27734564_SNP [dm6]	G	A	6.220e^-6	0.702	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3525060	3L_3525060_SNP [dm3] 3L_3525060_SNP [dm6]	A	G	6.335e^-6	0.702	INTRON Eip63E
3R	23501319	3R_23501319_SNP [dm3] 3R_27675597_SNP [dm6]	C	A	6.728e^-6	0.702	INTRON unc80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23503365	3R_23503365_SNP [dm3] 3R_27677643_SNP [dm6]	A	G	6.728e^-6	0.702	UTR_5_PRIME CG5590 DOWNSTREAM unc80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
X	17337530	X_17337530_DEL [dm3] X_17443497_DEL [dm6]	CCAAAGGC	C	6.786e^-6	0.702	INTRON CG12994
2L	9193471	2L_9193471_DEL [dm3] 2L_9193471_DEL [dm6]	TT	A	7.034e^-6	0.702	INTRON tai
2R	3812654	2R_3812654_SNP [dm3] 2R_7925149_SNP [dm6]	A	T	7.788e^-6	0.702	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	3812652	2R_3812652_SNP [dm3] 2R_7925147_SNP [dm6]	A	C	7.890e^-6	0.702	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	12992159	X_12992159_SNP [dm3] X_13098126_SNP [dm6]	G	A	8.333e^-6	0.702	SYNONYMOUS_CODING CG43313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10838982	3R_10838982_DEL [dm3] 3R_15013260_DEL [dm6]	CC	C	8.774e^-6	0.702	INTERGENIC
3R	7906721	3R_7906721_MNP [dm3] 3R_12080999_MNP [dm6]	AGCGC	TATTA	9.385e^-6	0.702	INTRON CG14741	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	4252978	X_4252978_SNP [dm3] X_4358945_SNP [dm6]	C	G	9.461e^-6	0.702	INTRON norpA
3R	22979078	3R_22979078_SNP [dm3] 3R_27153356_SNP [dm6]	G	A	9.899e^-6	0.702	INTRON Men-b	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3298420	3L_3298420_SNP [dm3] 3L_3298420_SNP [dm6]	A	G	1.048e^-5	0.702	SYNONYMOUS_CODING CG12009 UPSTREAM mir-955 DOWNSTREAM CG14968
3R	25065088	3R_25065088_SNP [dm3] 3R_29239366_SNP [dm6]	A	C	1.086e^-5	0.702	UPSTREAM CG11951 INTRON CG31427
2R	10528040	2R_10528040_DEL [dm3] 2R_14640535_DEL [dm6]	AA	A	1.110e^-5	0.702	DOWNSTREAM CG42715 INTRON CG12862	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19812743	3L_19812743_SNP [dm3] 3L_19819643_SNP [dm6]	C	T	1.146e^-5	0.702	SYNONYMOUS_CODING Deaf1	TF binding site mE1_TFBS_chinmo
2R	10527990	2R_10527990_SNP [dm3] 2R_14640485_SNP [dm6]	G	T	1.243e^-5	0.702	DOWNSTREAM CG42715 INTRON CG12862	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3077465	2R_3077465_SNP [dm3] 2R_7189960_SNP [dm6]	C	A	1.299e^-5	0.702	INTRON pk
2R	13081965	2R_13081965_SNP [dm3] 2R_17194460_SNP [dm6]	T	A	1.307e^-5	0.702	UPSTREAM CG10950 INTERGENIC
3R	23498549	3R_23498549_SNP [dm3] 3R_27672827_SNP [dm6]	C	T	1.338e^-5	0.702	INTRON unc80	TF binding site mE1_TFBS_chinmo
X	16230647	X_16230647_SNP [dm3] X_16336614_SNP [dm6]	C	T	1.351e^-5	0.702	SYNONYMOUS_CODING Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7728414	2R_7728414_SNP [dm3] 2R_11840909_SNP [dm6]	C	G	1.385e^-5	0.702	UPSTREAM CG34229 INTERGENIC
2R	7731660	2R_7731660_SNP [dm3] 2R_11844155_SNP [dm6]	C	A	1.385e^-5	0.702	UTR_5_PRIME S2P UPSTREAM CG43190 DOWNSTREAM CR44304
2R	7734967	2R_7734967_INS [dm3] 2R_11847462_INS [dm6]	G	GAGCAAATAG	1.385e^-5	0.702	INTRON Sln
3R	23504658	3R_23504658_SNP [dm3] 3R_27678936_SNP [dm6]	G	A	1.529e^-5	0.755	UTR_3_PRIME CG5590 UPSTREAM CG12883	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	4252946	X_4252946_SNP [dm3] X_4358913_SNP [dm6]	A	G	1.635e^-5	0.786	INTRON norpA
2R	10527968	2R_10527968_SNP [dm3] 2R_14640463_SNP [dm6]	G	A	1.721e^-5	0.793	DOWNSTREAM CG42715 INTRON CG12862	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3298448	3L_3298448_INS [dm3] 3L_3298448_INS [dm6]	G	GCAC	1.734e^-5	0.793	UPSTREAM mir-955 DOWNSTREAM CG14968
2R	7731470	2R_7731470_SNP [dm3] 2R_11843965_SNP [dm6]	T	A	1.827e^-5	0.812	UTR_5_PRIME S2P UPSTREAM CG43190 DOWNSTREAM CR44304
3R	15582957	3R_15582957_SNP [dm3] 3R_19757235_SNP [dm6]	G	A	1.873e^-5	0.812	INTRON GluClalpha
2L	10885678	2L_10885678_SNP [dm3] 2L_10885678_SNP [dm6]	T	C	1.944e^-5	0.812	UPSTREAM CR44490 INTERGENIC
2L	15808493	2L_15808493_SNP [dm3] 2L_15808493_SNP [dm6]	C	A	1.947e^-5	0.812	DOWNSTREAM CR44602 EXON CR44602
3R	6517794	3R_6517794_INS [dm3] 3R_10692072_INS [dm6]	T	TT	1.992e^-5	0.812	INTRON Skeletor	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23503177	3R_23503177_SNP [dm3] 3R_27677455_SNP [dm6]	T	C	2.044e^-5	0.816	UPSTREAM CG5590 DOWNSTREAM unc80 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	12843974	3L_12843974_DEL [dm3] 3L_12850874_DEL [dm6]	AGAA	T	2.198e^-5	0.859	UPSTREAM CG10948 INTRON Wbp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12843980	3L_12843980_INS [dm3] 3L_12850880_INS [dm6]	T	TGTCTATGTT	2.282e^-5	0.873	UPSTREAM CG10948 INTRON Wbp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10885589	2L_10885589_SNP [dm3] 2L_10885589_SNP [dm6]	A	G	2.379e^-5	0.892	UPSTREAM CR44490 INTERGENIC
3R	23500564	3R_23500564_SNP [dm3] 3R_27674842_SNP [dm6]	C	T	2.576e^-5	0.915	SYNONYMOUS_CODING unc80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3298405	3L_3298405_SNP [dm3] 3L_3298405_SNP [dm6]	A	G	2.646e^-5	0.915	SYNONYMOUS_CODING CG12009 UPSTREAM mir-955 DOWNSTREAM CG14968
3R	20342127	3R_20342127_SNP [dm3] 3R_24516405_SNP [dm6]	C	T	2.729e^-5	0.915	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3325948	X_3325948_SNP [dm3] X_3431915_SNP [dm6]	G	A	2.743e^-5	0.915	INTRON CR44999 & 1 other
X	8841578	X_8841578_SNP [dm3] X_8947545_SNP [dm6]	C	G	2.793e^-5	0.915	INTRON rdgA
2R	16732974	2R_16732974_INS [dm3] 2R_20845469_INS [dm6]	CC	AAAGGGTG	2.812e^-5	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3330394	3L_3330394_SNP [dm3] 3L_3330394_SNP [dm6]	A	G	2.884e^-5	0.915	NON_SYNONYMOUS_CODING CG14961 DOWNSTREAM CR45380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6452915	3L_6452915_SNP [dm3] 3L_6459815_SNP [dm6]	T	C	2.888e^-5	0.915	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
3R	7906712	3R_7906712_INS [dm3] 3R_12080990_INS [dm6]	A	ACATATTAC	2.984e^-5	0.915	INTRON CG14741	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	7906715	3R_7906715_MNP [dm3] 3R_12080993_MNP [dm6]	CAGCG	ATTAC	2.984e^-5	0.915	INTRON CG14741	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	7906728	3R_7906728_SNP [dm3] 3R_12081006_SNP [dm6]	A	T	2.984e^-5	0.915	INTRON CG14741	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	12558120	2L_12558120_SNP [dm3] 2L_12558120_SNP [dm6]	A	C	3.032e^-5	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9567283	3R_9567283_SNP [dm3] 3R_13741561_SNP [dm6]	T	A	3.073e^-5	0.915	INTRON CG34383
2R	14271651	2R_14271651_SNP [dm3] 2R_18384146_SNP [dm6]	C	A	3.125e^-5	0.916	UPSTREAM IM23 & 1 other DOWNSTREAM CG15067 INTRON IM1
2L	14566781	2L_14566781_SNP [dm3] 2L_14566781_SNP [dm6]	T	G	3.380e^-5	0.953	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3298417	3L_3298417_SNP [dm3] 3L_3298417_SNP [dm6]	A	T	3.466e^-5	0.953	SYNONYMOUS_CODING CG12009 UPSTREAM mir-955 DOWNSTREAM CG14968
X	4762076	X_4762076_SNP [dm3] X_4868043_SNP [dm6]	A	T	3.475e^-5	0.953	INTRON CG42594
3R	7906737	3R_7906737_SNP [dm3] 3R_12081015_SNP [dm6]	T	C	3.504e^-5	0.953	INTRON CG14741	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	15808495	2L_15808495_SNP [dm3] 2L_15808495_SNP [dm6]	A	G	3.525e^-5	0.953	DOWNSTREAM CR44602 EXON CR44602
3R	10838951	3R_10838951_SNP [dm3] 3R_15013229_SNP [dm6]	T	C	3.556e^-5	0.953	INTERGENIC
3R	23497086	3R_23497086_SNP [dm3] 3R_27671364_SNP [dm6]	A	C	3.627e^-5	0.958	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
2R	7404658	2R_7404658_DEL [dm3] 2R_11517153_DEL [dm6]	TGAGT	T	4.126e^-5	0.979	INTERGENIC
2R	10527509	2R_10527509_SNP [dm3] 2R_14640004_SNP [dm6]	C	A	4.161e^-5	0.979	DOWNSTREAM CG12862 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	3812632	2R_3812632_SNP [dm3] 2R_7925127_SNP [dm6]	A	T	4.208e^-5	0.979	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	10582183	2R_10582183_SNP [dm3] 2R_14694678_SNP [dm6]	G	A	4.294e^-5	0.979	INTRON mspo
3L	14342414	3L_14342414_SNP [dm3] 3L_14349314_SNP [dm6]	T	C	4.300e^-5	0.979	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26689630	3R_26689630_SNP [dm3] 3R_30863908_SNP [dm6]	C	T	4.387e^-5	0.979	INTERGENIC
X	20008226	X_20008226_SNP [dm3] X_20114193_SNP [dm6]	G	A	4.405e^-5	0.979	INTERGENIC
3R	17836172	3R_17836172_SNP [dm3] 3R_22010450_SNP [dm6]	C	T	4.417e^-5	0.979	UTR_3_PRIME Eip93F
3R	23502700	3R_23502700_SNP [dm3] 3R_27676978_SNP [dm6]	A	T	4.459e^-5	0.979	UTR_3_PRIME unc80 UPSTREAM CG5590	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3L	11661059	3L_11661059_SNP [dm3] 3L_11667959_SNP [dm6]	C	T	4.466e^-5	0.979	INTRON CG32085
2R	10527810	2R_10527810_INS [dm3] 2R_14640305_INS [dm6]	T	TACCT	4.519e^-5	0.979	FRAME_SHIFT CG12862 DOWNSTREAM CG42715	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2603182	X_2603182_SNP [dm3] X_2709149_SNP [dm6]	A	G	4.612e^-5	0.979	NON_SYNONYMOUS_CODING CG2681	TF binding site mE1_TFBS_chinmo
2L	2925264	2L_2925264_SNP [dm3] 2L_2925264_SNP [dm6]	C	G	4.671e^-5	0.979	INTRON lilli
3R	20718349	3R_20718349_SNP [dm3] 3R_24892627_SNP [dm6]	G	A	4.791e^-5	0.979	UPSTREAM CG31121 INTRON CG31121
3L	9839177	3L_9839177_DEL [dm3] 3L_9846077_DEL [dm6]	GCCCATATGTGTTTAGTATT...	G	4.897e^-5	0.979	INTRON RasGAP1	TF binding site BDTNP1_TFBS_dl
3L	13196500	3L_13196500_SNP [dm3] 3L_13203400_SNP [dm6]	T	C	5.063e^-5	0.979	INTERGENIC
3L	11669094	3L_11669094_SNP [dm3] 3L_11675994_SNP [dm6]	A	C	5.070e^-5	0.979	INTRON CG32085
3R	23513457	3R_23513457_SNP [dm3] 3R_27687735_SNP [dm6]	G	A	5.088e^-5	0.979	NON_SYNONYMOUS_CODING CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
3R	9567301	3R_9567301_SNP [dm3] 3R_13741579_SNP [dm6]	T	C	5.183e^-5	0.979	INTRON CG34383
3R	17836173	3R_17836173_SNP [dm3] 3R_22010451_SNP [dm6]	A	T	5.217e^-5	0.979	UTR_3_PRIME Eip93F
3R	6562609	3R_6562609_SNP [dm3] 3R_10736887_SNP [dm6]	C	G	5.244e^-5	0.979	UPSTREAM tomboy20 DOWNSTREAM TkR86C INTERGENIC
2L	3435288	2L_3435288_SNP [dm3] 2L_3435288_SNP [dm6]	T	G	5.262e^-5	0.979	INTERGENIC
2R	15449650	2R_15449650_DEL [dm3] 2R_19562145_DEL [dm6]	AA	A	5.398e^-5	0.979	INTRON sm
3R	17836178	3R_17836178_INS [dm3] 3R_22010456_INS [dm6]	A	TAAT	5.408e^-5	0.979	UTR_3_PRIME Eip93F
2L	6021795	2L_6021795_SNP [dm3] 2L_6021795_SNP [dm6]	A	T	5.414e^-5	0.979	DOWNSTREAM CG13996 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24732189	3R_24732189_SNP [dm3] 3R_28906467_SNP [dm6]	T	G	5.445e^-5	0.979	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18450260	3R_18450260_SNP [dm3] 3R_22624538_SNP [dm6]	G	A	5.447e^-5	0.979	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16615462	3R_16615462_SNP [dm3] 3R_20789740_SNP [dm6]	T	C	5.476e^-5	0.979	UPSTREAM Syp INTRON Syp
3R	17836180	3R_17836180_SNP [dm3] 3R_22010458_SNP [dm6]	G	A	5.591e^-5	0.979	UTR_3_PRIME Eip93F
2R	7404675	2R_7404675_SNP [dm3] 2R_11517170_SNP [dm6]	G	T	5.632e^-5	0.979	INTERGENIC
3R	23492278	3R_23492278_DEL [dm3] 3R_27666556_DEL [dm6]	GA	G	5.771e^-5	0.979	INTRON unc80
2L	2598176	2L_2598176_SNP [dm3] 2L_2598176_SNP [dm6]	C	A	5.772e^-5	0.979	DOWNSTREAM CR44790 INTERGENIC
3R	8782283	3R_8782283_SNP [dm3] 3R_12956561_SNP [dm6]	C	T	5.909e^-5	0.979	INTRON grsm
3R	23497987	3R_23497987_SNP [dm3] 3R_27672265_SNP [dm6]	C	T	6.017e^-5	0.979	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9567304	3R_9567304_SNP [dm3] 3R_13741582_SNP [dm6]	T	C	6.090e^-5	0.979	INTRON CG34383
2R	5744848	2R_5744848_SNP [dm3] 2R_9857343_SNP [dm6]	C	A	6.101e^-5	0.979	UPSTREAM CG1516 INTRON CG1516
3R	22979149	3R_22979149_SNP [dm3] 3R_27153427_SNP [dm6]	C	T	6.123e^-5	0.979	INTRON Men-b	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	5509440	X_5509440_MNP [dm3] X_5615407_MNP [dm6]	TTCC	CAGT	6.125e^-5	0.979	NON_SYNONYMOUS_CODING CG34434 UPSTREAM CG34435
2R	5741562	2R_5741562_SNP [dm3] 2R_9854057_SNP [dm6]	G	C	6.139e^-5	0.979	INTRON CG1516
X	20543162	X_20543162_SNP [dm3] X_20672135_SNP [dm6]	T	A	6.152e^-5	0.979	SYNONYMOUS_CODING hydra
2R	7767097	2R_7767097_SNP [dm3] 2R_11879592_SNP [dm6]	A	G	6.173e^-5	0.979	SYNONYMOUS_CODING CG13185
3L	11661074	3L_11661074_DEL [dm3] 3L_11667974_DEL [dm6]	TAGT	T	6.196e^-5	0.979	INTRON CG32085
2L	7333445	2L_7333445_SNP [dm3] 2L_7333445_SNP [dm6]	T	C	6.242e^-5	0.979	UPSTREAM Wnt6 INTERGENIC
2R	7987752	2R_7987752_SNP [dm3] 2R_12100247_SNP [dm6]	A	G	6.440e^-5	0.979	INTRON jeb
2R	7767067	2R_7767067_SNP [dm3] 2R_11879562_SNP [dm6]	A	C	6.451e^-5	0.979	SYNONYMOUS_CODING CG13185
2L	10885399	2L_10885399_SNP [dm3] 2L_10885399_SNP [dm6]	C	G	6.455e^-5	0.979	INTERGENIC
2R	14152581	2R_14152581_SNP [dm3] 2R_18265076_SNP [dm6]	G	A	6.491e^-5	0.979	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23943935	3R_23943935_INS [dm3] 3R_28118213_INS [dm6]	G	GG	6.540e^-5	0.979	INTERGENIC
3R	7853387	3R_7853387_SNP [dm3] 3R_12027665_SNP [dm6]	C	A	6.685e^-5	0.979	DOWNSTREAM CG31358 & 2 others INTERGENIC
2R	13081963	2R_13081963_SNP [dm3] 2R_17194458_SNP [dm6]	T	G	6.714e^-5	0.979	UPSTREAM CG10950 INTERGENIC
X	4763142	X_4763142_SNP [dm3] X_4869109_SNP [dm6]	T	A	6.739e^-5	0.979	INTRON CG42594
3R	23944013	3R_23944013_SNP [dm3] 3R_28118291_SNP [dm6]	C	T	6.744e^-5	0.979	INTERGENIC
3L	12939140	3L_12939140_SNP [dm3] 3L_12946040_SNP [dm6]	A	G	6.773e^-5	0.979	INTERGENIC
3L	12092168	3L_12092168_SNP [dm3] 3L_12099068_SNP [dm6]	C	G	6.827e^-5	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	2268583	X_2268583_SNP [dm3] X_2374550_SNP [dm6]	C	A	6.896e^-5	0.979	INTRON PsGEF	TF binding site mE1_TFBS_chinmo
2L	5563164	2L_5563164_INS [dm3] 2L_5563164_INS [dm6]	A	AA	6.904e^-5	0.979	SPLICE_SITE_REGION GluRIIB INTRON GluRIIB	TF binding site mE1_TFBS_cad
2L	5563200	2L_5563200_SNP [dm3] 2L_5563200_SNP [dm6]	A	G	6.974e^-5	0.979	INTRON GluRIIB	TF binding site mE1_TFBS_cad
3R	13504041	3R_13504041_DEL [dm3] 3R_17678319_DEL [dm6]	GG	G	7.020e^-5	0.979	INTRON alt	TF binding site mE1_TFBS_inv
3R	8782290	3R_8782290_SNP [dm3] 3R_12956568_SNP [dm6]	A	G	7.096e^-5	0.979	INTRON grsm
X	18165680	X_18165680_SNP [dm3] X_18271647_SNP [dm6]	C	T	7.105e^-5	0.979	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15592568	3R_15592568_DEL [dm3] 3R_19766846_DEL [dm6]	CTCAAC	C	7.121e^-5	0.979	INTRON GluClalpha
2R	14152586	2R_14152586_SNP [dm3] 2R_18265081_SNP [dm6]	G	A	7.128e^-5	0.979	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17181116	2R_17181116_SNP [dm3] 2R_21293611_SNP [dm6]	C	T	7.147e^-5	0.979	UTR_5_PRIME Sgf29 UPSTREAM RpL29 & 1 other DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2R	7404678	2R_7404678_SNP [dm3] 2R_11517173_SNP [dm6]	A	G	7.235e^-5	0.979	INTERGENIC
3L	11648559	3L_11648559_DEL [dm3] 3L_11655459_DEL [dm6]	TTGGAT	T	7.347e^-5	0.979	INTRON CG32085
3R	14829551	3R_14829551_INS [dm3] 3R_19003829_INS [dm6]	A	AAGAACCACT	7.350e^-5	0.979	INTRON gukh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14447335	3L_14447335_SNP [dm3] 3L_14454235_SNP [dm6]	G	T	7.405e^-5	0.979	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10542423	2R_10542423_SNP [dm3] 2R_14654918_SNP [dm6]	A	G	7.406e^-5	0.979	INTERGENIC
3R	23511526	3R_23511526_SNP [dm3] 3R_27685804_SNP [dm6]	T	C	7.482e^-5	0.979	UTR_3_PRIME CG31055 UPSTREAM CG12880	TF binding site mE1_TFBS_cad
3L	13196645	3L_13196645_SNP [dm3] 3L_13203545_SNP [dm6]	A	G	7.518e^-5	0.979	INTERGENIC
2R	20387100	2R_20387100_SNP [dm3] 2R_24499577_SNP [dm6]	A	G	7.561e^-5	0.979	DOWNSTREAM Yu INTRON Ssl
X	15993052	X_15993052_SNP [dm3] X_16099019_SNP [dm6]	G	A	7.595e^-5	0.979	SYNONYMOUS_CODING CG42353 UTR_5_PRIME CG42354	TF binding site mE1_TFBS_HSA
X	2603209	X_2603209_SNP [dm3] X_2709176_SNP [dm6]	C	A	7.633e^-5	0.979	SYNONYMOUS_CODING CG2681	TF binding site mE1_TFBS_chinmo
2L	10885611	2L_10885611_SNP [dm3] 2L_10885611_SNP [dm6]	T	C	7.643e^-5	0.979	UPSTREAM CR44490 INTERGENIC
2L	4972831	2L_4972831_SNP [dm3] 2L_4972831_SNP [dm6]	C	G	7.701e^-5	0.979	SYNONYMOUS_CODING CG14043 INTRON l_2_05714	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
2L	15805007	2L_15805007_SNP [dm3] 2L_15805007_SNP [dm6]	C	A	7.710e^-5	0.979	INTERGENIC
3R	25065103	3R_25065103_SNP [dm3] 3R_29239381_SNP [dm6]	A	T	7.728e^-5	0.979	UPSTREAM CG11951 INTRON CG31427
X	12373444	X_12373444_SNP [dm3] X_12479411_SNP [dm6]	G	A	7.902e^-5	0.98	DOWNSTREAM CG42258 INTERGENIC
3R	13471470	3R_13471470_DEL [dm3] 3R_17645748_DEL [dm6]	TTGTATATTTTTGAACAGAG...	CTTTTAAA	8.034e^-5	0.98	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	4764613	X_4764613_SNP [dm3] X_4870580_SNP [dm6]	A	C	8.105e^-5	0.98	INTRON CG42594
3R	23943979	3R_23943979_SNP [dm3] 3R_28118257_SNP [dm6]	C	T	8.133e^-5	0.98	INTERGENIC
3R	23943982	3R_23943982_SNP [dm3] 3R_28118260_SNP [dm6]	C	T	8.163e^-5	0.98	INTERGENIC
3R	4768260	3R_4768260_SNP [dm3] 3R_8942538_SNP [dm6]	C	T	8.232e^-5	0.98	UTR_3_PRIME skap DOWNSTREAM CG11964 INTRON skap
3R	20342166	3R_20342166_SNP [dm3] 3R_24516444_SNP [dm6]	G	A	8.296e^-5	0.98	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11661052	3L_11661052_SNP [dm3] 3L_11667952_SNP [dm6]	T	A	8.460e^-5	0.98	INTRON CG32085
2L	15808565	2L_15808565_SNP [dm3] 2L_15808565_SNP [dm6]	T	C	8.475e^-5	0.98	DOWNSTREAM CR44602 EXON CR44602
3R	14361799	3R_14361799_SNP [dm3] 3R_18536077_SNP [dm6]	G	A	8.481e^-5	0.98	INTRON fru
3R	23489937	3R_23489937_INS [dm3] 3R_27664215_INS [dm6]	T	TAT	8.529e^-5	0.98	INTRON unc80
3R	23948879	3R_23948879_SNP [dm3] 3R_28123157_SNP [dm6]	A	G	8.536e^-5	0.98	INTERGENIC
3L	18453296	3L_18453296_SNP [dm3] 3L_18460196_SNP [dm6]	A	C	8.579e^-5	0.98	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	10128959	2L_10128959_SNP [dm3] 2L_10128959_SNP [dm6]	G	A	8.628e^-5	0.98	INTRON CG44153
2R	20392461	2R_20392461_SNP [dm3] 2R_24504938_SNP [dm6]	C	T	8.640e^-5	0.98	INTERGENIC
2R	7729868	2R_7729868_SNP [dm3] 2R_11842363_SNP [dm6]	A	G	8.657e^-5	0.98	SYNONYMOUS_CODING S2P DOWNSTREAM CG34229	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12091964	3L_12091964_SNP [dm3] 3L_12098864_SNP [dm6]	C	G	8.666e^-5	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	4972876	2L_4972876_SNP [dm3] 2L_4972876_SNP [dm6]	T	C	8.676e^-5	0.98	SYNONYMOUS_CODING CG14043 INTRON l_2_05714	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	13960400	3R_13960400_SNP [dm3] 3R_18134678_SNP [dm6]	A	T	8.917e^-5	0.988	UTR_3_PRIME sr DOWNSTREAM sr
3R	23943904	3R_23943904_DEL [dm3] 3R_28118182_DEL [dm6]	CGACTCGGGCTCC...	C	8.989e^-5	0.988	INTERGENIC
2L	1933161	2L_1933161_SNP [dm3] 2L_1933161_SNP [dm6]	C	T	9.069e^-5	0.988	INTRON CG7337
3R	8555268	3R_8555268_SNP [dm3] 3R_12729546_SNP [dm6]	A	G	9.095e^-5	0.988	INTERGENIC
2L	2462829	2L_2462829_DEL [dm3] 2L_2462829_DEL [dm6]	CTTTAGCTGATAAAGGA...	AC	9.104e^-5	0.988	DOWNSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	4798322	X_4798322_SNP [dm3] X_4904289_SNP [dm6]	A	G	9.339e^-5	0.988	SYNONYMOUS_CODING CG42594	TF binding site mE1_TFBS_chinmo
3R	20234290	3R_20234290_SNP [dm3] 3R_24408568_SNP [dm6]	C	G	9.412e^-5	0.988	INTRON nAChRalpha1
3R	13507851	3R_13507851_SNP [dm3] 3R_17682129_SNP [dm6]	T	A	9.414e^-5	0.988	UTR_5_PRIME alt UPSTREAM CG7655 INTRON alt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	16615260	3R_16615260_SNP [dm3] 3R_20789538_SNP [dm6]	T	C	9.524e^-5	0.988	UPSTREAM Syp INTRON Syp
3L	12085959	3L_12085959_SNP [dm3] 3L_12092859_SNP [dm6]	A	G	9.721e^-5	0.988	INTERGENIC
3R	16585635	3R_16585635_SNP [dm3] 3R_20759913_SNP [dm6]	A	C	9.730e^-5	0.988	INTRON Syp & 1 other
2L	5684402	2L_5684402_SNP [dm3] 2L_5684402_SNP [dm6]	T	C	9.876e^-5	0.988	INTERGENIC
3R	15825883	3R_15825883_SNP [dm3] 3R_20000161_SNP [dm6]	C	G	9.911e^-5	0.988	INTRON Hs6st
2L	9193375	2L_9193375_SNP [dm3] 2L_9193375_SNP [dm6]	C	A	9.978e^-5	0.988	INTRON tai
3R	7063231	3R_7063231_SNP [dm3] 3R_11237509_SNP [dm6]	T	A	1.000e^-4	0.988	UTR_3_PRIME CG31441 UPSTREAM CG31388	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	8812591	X_8812591_SNP [dm3] X_8918558_SNP [dm6]	A	C	1.018e^-4	0.988	INTRON rdgA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20008269	X_20008269_SNP [dm3] X_20114236_SNP [dm6]	C	T	1.018e^-4	0.988	INTERGENIC
2L	14578848	2L_14578848_SNP [dm3] 2L_14578848_SNP [dm6]	A	G	1.019e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	20911558	2L_20911558_SNP [dm3] 2L_20911558_SNP [dm6]	T	C	1.021e^-4	0.988	INTRON sky & 1 other
2L	6845624	2L_6845624_SNP [dm3] 2L_6845624_SNP [dm6]	T	C	1.021e^-4	0.988	INTERGENIC
3L	12306302	3L_12306302_SNP [dm3] 3L_12313202_SNP [dm6]	G	A	1.024e^-4	0.988	INTERGENIC
X	18417333	X_18417333_SNP [dm3] X_18523300_SNP [dm6]	T	C	1.035e^-4	0.988	UPSTREAM CG6481 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6933598	2R_6933598_SNP [dm3] 2R_11046093_SNP [dm6]	G	T	1.039e^-4	0.988	INTRON luna
3R	23496832	3R_23496832_SNP [dm3] 3R_27671110_SNP [dm6]	G	A	1.041e^-4	0.988	SYNONYMOUS_CODING unc80
2R	7404665	2R_7404665_SNP [dm3] 2R_11517160_SNP [dm6]	T	A	1.045e^-4	0.988	INTERGENIC
3L	21276512	3L_21276512_SNP [dm3] 3L_21283412_SNP [dm6]	T	C	1.049e^-4	0.988	NON_SYNONYMOUS_CODING CG12974	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3812634	2R_3812634_DEL [dm3] 2R_7925129_DEL [dm6]	TGGAAATTAAATGAA...	T	1.052e^-4	0.988	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	7277783	3R_7277783_SNP [dm3] 3R_11452061_SNP [dm6]	A	C	1.053e^-4	0.988	UPSTREAM sals DOWNSTREAM PGRP-LB INTRON CG17230
2L	2902962	2L_2902962_SNP [dm3] 2L_2902962_SNP [dm6]	C	T	1.055e^-4	0.988	INTRON lilli	TF binding site mE1_TFBS_chinmo
3R	8555269	3R_8555269_SNP [dm3] 3R_12729547_SNP [dm6]	T	A	1.070e^-4	0.988	INTERGENIC
3R	14361808	3R_14361808_SNP [dm3] 3R_18536086_SNP [dm6]	A	G	1.072e^-4	0.988	INTRON fru
2L	4972808	2L_4972808_SNP [dm3] 2L_4972808_SNP [dm6]	C	A	1.081e^-4	0.988	SYNONYMOUS_CODING CG14043 INTRON l_2_05714	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
X	10782434	X_10782434_SNP [dm3] X_10888401_SNP [dm6]	T	A	1.091e^-4	0.988	INTRON Ork1	TF binding site mE1_TFBS_inv
2L	16183875	2L_16183875_INS [dm3] 2L_16183875_INS [dm6]	A	AC	1.097e^-4	0.988	INTRON Ca-alpha1D
X	4443340	X_4443340_SNP [dm3] X_4549307_SNP [dm6]	T	C	1.100e^-4	0.988	SYNONYMOUS_CODING CG15912 UPSTREAM Usf DOWNSTREAM CG11436 INTRON CR32773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	14462415	2L_14462415_SNP [dm3] 2L_14462415_SNP [dm6]	C	T	1.100e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	20342169	3R_20342169_SNP [dm3] 3R_24516447_SNP [dm6]	G	A	1.104e^-4	0.988	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3686449	3L_3686449_MNP [dm3] 3L_3686449_MNP [dm6]	GCG	CAC	1.110e^-4	0.988	INTERGENIC
2L	8824240	2L_8824240_SNP [dm3] 2L_8824240_SNP [dm6]	G	A	1.116e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20235102	3R_20235102_SNP [dm3] 3R_24409380_SNP [dm6]	G	T	1.116e^-4	0.988	INTRON nAChRalpha1
3L	10300875	3L_10300875_SNP [dm3] 3L_10307775_SNP [dm6]	A	T	1.125e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5354884	3L_5354884_SNP [dm3] 3L_5361784_SNP [dm6]	G	A	1.140e^-4	0.988	SYNONYMOUS_CODING CG4769
2R	16733011	2R_16733011_SNP [dm3] 2R_20845506_SNP [dm6]	T	C	1.157e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4732655	3L_4732655_SNP [dm3] 3L_4732655_SNP [dm6]	C	G	1.159e^-4	0.988	INTRON RhoGEF64C
3R	8782225	3R_8782225_SNP [dm3] 3R_12956503_SNP [dm6]	A	G	1.160e^-4	0.988	INTRON grsm
3L	12881409	3L_12881409_SNP [dm3] 3L_12888309_SNP [dm6]	C	T	1.177e^-4	0.988	SYNONYMOUS_CODING CG14120
2L	2912572	2L_2912572_SNP [dm3] 2L_2912572_SNP [dm6]	T	C	1.177e^-4	0.988	INTRON lilli
3R	25205634	3R_25205634_SNP [dm3] 3R_29379912_SNP [dm6]	G	C	1.186e^-4	0.988	INTRON Ptp99A
2L	16609435	2L_16609435_SNP [dm3] 2L_16609435_SNP [dm6]	A	C	1.193e^-4	0.988	NON_SYNONYMOUS_CODING CG4631 INTRON CG42389
3L	3981966	3L_3981966_SNP [dm3] 3L_3981966_SNP [dm6]	T	A	1.200e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
3R	23497068	3R_23497068_SNP [dm3] 3R_27671346_SNP [dm6]	T	A	1.205e^-4	0.988	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
3R	23944043	3R_23944043_DEL [dm3] 3R_28118321_DEL [dm6]	AAGGCAG	A	1.207e^-4	0.988	INTERGENIC
3L	9935241	3L_9935241_SNP [dm3] 3L_9942141_SNP [dm6]	C	G	1.207e^-4	0.988	INTRON CG34356
2L	20623009	2L_20623009_SNP [dm3] 2L_20623009_SNP [dm6]	A	G	1.208e^-4	0.988	INTRON CR44909
3R	23944042	3R_23944042_SNP [dm3] 3R_28118320_SNP [dm6]	G	T	1.209e^-4	0.988	INTERGENIC
3L	3686481	3L_3686481_SNP [dm3] 3L_3686481_SNP [dm6]	T	A	1.214e^-4	0.988	INTERGENIC
3L	12096016	3L_12096016_SNP [dm3] 3L_12102916_SNP [dm6]	A	C	1.218e^-4	0.988	INTERGENIC
3L	10590421	3L_10590421_DEL [dm3] 3L_10597321_DEL [dm6]	CGTT	C	1.219e^-4	0.988	INTERGENIC
3L	12096017	3L_12096017_SNP [dm3] 3L_12102917_SNP [dm6]	A	C	1.224e^-4	0.988	INTERGENIC
X	4448543	X_4448543_SNP [dm3] X_4554510_SNP [dm6]	C	A	1.237e^-4	0.988	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13508131	3R_13508131_DEL [dm3] 3R_17682409_DEL [dm6]	TGTTAAACTTTT...	T	1.250e^-4	0.988	UTR_5_PRIME alt UPSTREAM CG7655 & 1 other INTRON alt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1189875	2L_1189875_SNP [dm3] 2L_1189875_SNP [dm6]	C	T	1.259e^-4	0.988	INTRON CG5001
3L	12716713	3L_12716713_DEL [dm3] 3L_12723613_DEL [dm6]	ATA	A	1.259e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16580009	3R_16580009_SNP [dm3] 3R_20754287_SNP [dm6]	G	T	1.282e^-4	0.988	DOWNSTREAM CG42322 INTRON CG42322	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	23943926	3R_23943926_SNP [dm3] 3R_28118204_SNP [dm6]	C	T	1.305e^-4	0.988	INTERGENIC
3R	20342139	3R_20342139_SNP [dm3] 3R_24516417_SNP [dm6]	C	T	1.307e^-4	0.988	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14204641	2R_14204641_SNP [dm3] 2R_18317136_SNP [dm6]	C	T	1.308e^-4	0.988	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12933449	3R_12933449_SNP [dm3] 3R_17107727_SNP [dm6]	A	G	1.319e^-4	0.988	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1933150	2L_1933150_SNP [dm3] 2L_1933150_SNP [dm6]	T	A	1.322e^-4	0.988	INTRON CG7337
3R	23502673	3R_23502673_SNP [dm3] 3R_27676951_SNP [dm6]	A	C	1.325e^-4	0.988	UTR_3_PRIME unc80 UPSTREAM CG5590	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_h mE1_TFBS_HSA
X	10214739	X_10214739_SNP [dm3] X_10320706_SNP [dm6]	A	G	1.330e^-4	0.988	INTRON alpha-Man-I
3R	707422	3R_707422_SNP [dm3] 3R_4881700_SNP [dm6]	G	A	1.331e^-4	0.988	INTERGENIC
3L	8007734	3L_8007734_SNP [dm3] 3L_8014634_SNP [dm6]	T	C	1.338e^-4	0.988	INTRON nmo
2L	10148861	2L_10148861_SNP [dm3] 2L_10148861_SNP [dm6]	A	G	1.341e^-4	0.988	INTRON CG44153 & 1 other
3R	20281341	3R_20281341_SNP [dm3] 3R_24455619_SNP [dm6]	T	A	1.344e^-4	0.988	INTRON nAChRalpha1
2R	14204666	2R_14204666_SNP [dm3] 2R_18317161_SNP [dm6]	C	T	1.346e^-4	0.988	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13515020	3R_13515020_SNP [dm3] 3R_17689298_SNP [dm6]	C	T	1.346e^-4	0.988	UTR_3_PRIME osa	TF binding site BDTNP1_TFBS_dl
3R	21434321	3R_21434321_DEL [dm3] 3R_25608599_DEL [dm6]	AGTCCTCTAATA...	A	1.348e^-4	0.988	DOWNSTREAM msi INTRON ymp
X	3790169	X_3790169_SNP [dm3] X_3896136_SNP [dm6]	C	G	1.362e^-4	0.988	NON_SYNONYMOUS_CODING CG42541	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13632293	3R_13632293_SNP [dm3] 3R_17806571_SNP [dm6]	T	A	1.364e^-4	0.988	NON_SYNONYMOUS_CODING CG17801 DOWNSTREAM CG7357
3L	20960321	3L_20960321_SNP [dm3] 3L_20967221_SNP [dm6]	A	G	1.366e^-4	0.988	SYNONYMOUS_CODING CG33287 UPSTREAM CG12983
3L	11661020	3L_11661020_SNP [dm3] 3L_11667920_SNP [dm6]	A	G	1.381e^-4	0.988	INTRON CG32085
3R	23943993	3R_23943993_SNP [dm3] 3R_28118271_SNP [dm6]	T	A	1.387e^-4	0.988	INTERGENIC
3R	21668127	3R_21668127_SNP [dm3] 3R_25842405_SNP [dm6]	A	T	1.392e^-4	0.988	NON_SYNONYMOUS_CODING alpha4GT2
3R	25688776	3R_25688776_SNP [dm3] 3R_29863054_SNP [dm6]	C	A	1.392e^-4	0.988	SYNONYMOUS_CODING RpS8 UPSTREAM snoRNA:Me28S-A2564 DOWNSTREAM Zip99C & 1 other	TF binding site mE1_TFBS_sens
X	16773643	X_16773643_SNP [dm3] X_16879610_SNP [dm6]	G	A	1.394e^-4	0.988	INTERGENIC
2L	3422558	2L_3422558_SNP [dm3] 2L_3422558_SNP [dm6]	T	A	1.396e^-4	0.988	INTRON pgant2
3R	10842484	3R_10842484_SNP [dm3] 3R_15016762_SNP [dm6]	G	A	1.398e^-4	0.988	DOWNSTREAM CG14861 INTERGENIC
3R	23943920	3R_23943920_SNP [dm3] 3R_28118198_SNP [dm6]	C	G	1.399e^-4	0.988	INTERGENIC
2L	16592134	2L_16592134_SNP [dm3] 2L_16592134_SNP [dm6]	A	T	1.407e^-4	0.988	INTRON CG42389	TF binding site mE1_TFBS_cad
2R	20703283	2R_20703283_SNP [dm3] 2R_24815760_SNP [dm6]	G	T	1.439e^-4	0.988	INTRON Dll	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	7644100	3R_7644100_SNP [dm3] 3R_11818378_SNP [dm6]	A	G	1.440e^-4	0.988	UPSTREAM CoVa INTRON glo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
X	16040238	X_16040238_DEL [dm3] X_16146205_DEL [dm6]	GG	G	1.449e^-4	0.988	INTRON disco-r	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4443358	X_4443358_SNP [dm3] X_4549325_SNP [dm6]	T	C	1.449e^-4	0.988	SYNONYMOUS_CODING CG15912 UPSTREAM Usf DOWNSTREAM CG11436 INTRON CR32773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	2965514	3L_2965514_SNP [dm3] 3L_2965514_SNP [dm6]	C	T	1.450e^-4	0.988	INTERGENIC
3R	23494961	3R_23494961_SNP [dm3] 3R_27669239_SNP [dm6]	G	A	1.459e^-4	0.988	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20205964	2R_20205964_SNP [dm3] 2R_24318441_SNP [dm6]	T	A	1.461e^-4	0.988	INTERGENIC
3R	9370006	3R_9370006_SNP [dm3] 3R_13544284_SNP [dm6]	T	A	1.464e^-4	0.988	UTR_3_PRIME CG31337
3R	22367031	3R_22367031_SNP [dm3] 3R_26541309_SNP [dm6]	G	A	1.472e^-4	0.988	INTRON scrib
3R	23943981	3R_23943981_SNP [dm3] 3R_28118259_SNP [dm6]	A	T	1.476e^-4	0.988	INTERGENIC
3R	23943988	3R_23943988_SNP [dm3] 3R_28118266_SNP [dm6]	A	G	1.483e^-4	0.988	INTERGENIC
2L	1784541	2L_1784541_SNP [dm3] 2L_1784541_SNP [dm6]	G	C	1.484e^-4	0.988	SYNONYMOUS_CODING Gr22e	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17180505	2R_17180505_SNP [dm3] 2R_21293000_SNP [dm6]	G	T	1.492e^-4	0.988	UPSTREAM CG30392 & 1 other INTRON Sgf29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_sens
2R	10527361	2R_10527361_DEL [dm3] 2R_14639856_DEL [dm6]	ACTAATAATACCCCT...	A	1.497e^-4	0.988	DOWNSTREAM CG43236 & 2 others INTERGENIC	TF binding site mE1_TFBS_inv
2L	17467608	2L_17467608_SNP [dm3] 2L_17467608_SNP [dm6]	A	T	1.504e^-4	0.988	INTRON BicD	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6017676	X_6017676_SNP [dm3] X_6123643_SNP [dm6]	T	G	1.507e^-4	0.988	INTRON Ca-alpha1T	TF binding site mE1_TFBS_HSA
3R	8807783	3R_8807783_INS [dm3] 3R_12982061_INS [dm6]	G	GT	1.510e^-4	0.988	INTRON Paip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	13196496	3L_13196496_SNP [dm3] 3L_13203396_SNP [dm6]	G	A	1.531e^-4	0.988	INTERGENIC
2L	2617384	2L_2617384_SNP [dm3] 2L_2617384_SNP [dm6]	C	T	1.538e^-4	0.988	INTERGENIC
2L	15913363	2L_15913363_SNP [dm3] 2L_15913363_SNP [dm6]	C	G	1.538e^-4	0.988	DOWNSTREAM CR44868 INTRON beat-Ib
X	5509404	X_5509404_SNP [dm3] X_5615371_SNP [dm6]	C	A	1.547e^-4	0.988	NON_SYNONYMOUS_CODING CG34434 UPSTREAM CG34435
X	16554557	X_16554557_SNP [dm3] X_16660524_SNP [dm6]	C	T	1.549e^-4	0.988	DOWNSTREAM CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
3L	9870558	3L_9870558_SNP [dm3] 3L_9877458_SNP [dm6]	C	G	1.557e^-4	0.988	INTERGENIC
3R	16872900	3R_16872900_SNP [dm3] 3R_21047178_SNP [dm6]	T	A	1.569e^-4	0.988	UPSTREAM CG31207 DOWNSTREAM CG7079 INTERGENIC
3L	8660444	3L_8660444_SNP [dm3] 3L_8667344_SNP [dm6]	T	A	1.580e^-4	0.988	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	16550213	X_16550213_SNP [dm3] X_16656180_SNP [dm6]	A	T	1.592e^-4	0.988	INTRON r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3298369	3L_3298369_SNP [dm3] 3L_3298369_SNP [dm6]	G	A	1.611e^-4	0.988	SYNONYMOUS_CODING CG12009 UPSTREAM mir-955 DOWNSTREAM CG14968
3R	21631620	3R_21631620_SNP [dm3] 3R_25805898_SNP [dm6]	A	C	1.611e^-4	0.988	UPSTREAM BG642167 INTERGENIC
3R	23498946	3R_23498946_SNP [dm3] 3R_27673224_SNP [dm6]	C	T	1.612e^-4	0.988	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
3R	18201734	3R_18201734_SNP [dm3] 3R_22376012_SNP [dm6]	C	T	1.614e^-4	0.988	UTR_5_PRIME CG18596 DOWNSTREAM CG7069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	7727224	3R_7727224_SNP [dm3] 3R_11901502_SNP [dm6]	C	G	1.621e^-4	0.988	INTRON Cad87A
2L	10030120	2L_10030120_SNP [dm3] 2L_10030120_SNP [dm6]	T	C	1.622e^-4	0.988	DOWNSTREAM CG13127 INTERGENIC
2R	14205127	2R_14205127_SNP [dm3] 2R_18317622_SNP [dm6]	G	C	1.623e^-4	0.988	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	2268771	X_2268771_SNP [dm3] X_2374738_SNP [dm6]	G	A	1.630e^-4	0.988	SYNONYMOUS_CODING PsGEF	TF binding site mE1_TFBS_chinmo
2R	5861507	2R_5861507_SNP [dm3] 2R_9974002_SNP [dm6]	T	C	1.634e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	23944097	3R_23944097_SNP [dm3] 3R_28118375_SNP [dm6]	G	T	1.636e^-4	0.988	INTERGENIC
2L	14462274	2L_14462274_SNP [dm3] 2L_14462274_SNP [dm6]	A	G	1.644e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	8935656	X_8935656_SNP [dm3] X_9041623_SNP [dm6]	A	C	1.647e^-4	0.988	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10590495	3L_10590495_SNP [dm3] 3L_10597395_SNP [dm6]	C	G	1.649e^-4	0.988	INTERGENIC
2R	12540745	2R_12540745_SNP [dm3] 2R_16653240_SNP [dm6]	C	G	1.656e^-4	0.988	NON_SYNONYMOUS_CODING Nach UPSTREAM Amyrel
X	4677452	X_4677452_SNP [dm3] X_4783419_SNP [dm6]	A	G	1.667e^-4	0.988	UPSTREAM CG15471 & 1 other INTERGENIC
3R	23505441	3R_23505441_SNP [dm3] 3R_27679719_SNP [dm6]	C	G	1.668e^-4	0.988	SYNONYMOUS_CODING CG12883 DOWNSTREAM CG5590 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5874020	2R_5874020_SNP [dm3] 2R_9986515_SNP [dm6]	T	A	1.671e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	1436339	2L_1436339_SNP [dm3] 2L_1436339_SNP [dm6]	G	A	1.672e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12337320	3L_12337320_SNP [dm3] 3L_12344220_SNP [dm6]	C	A	1.686e^-4	0.988	INTRON CrzR
3R	7864299	3R_7864299_DEL [dm3] 3R_12038577_DEL [dm6]	TA	T	1.693e^-4	0.988	INTERGENIC
3R	13471913	3R_13471913_SNP [dm3] 3R_17646191_SNP [dm6]	T	C	1.698e^-4	0.988	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15589693	3R_15589693_SNP [dm3] 3R_19763971_SNP [dm6]	G	A	1.699e^-4	0.988	INTRON GluClalpha
2L	5273151	2L_5273151_SNP [dm3] 2L_5273151_SNP [dm6]	T	C	1.701e^-4	0.988	DOWNSTREAM Bsg25D INTRON Bsg25D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5273155	2L_5273155_SNP [dm3] 2L_5273155_SNP [dm6]	G	A	1.701e^-4	0.988	SPLICE_SITE_REGION Bsg25D DOWNSTREAM Bsg25D INTRON Bsg25D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3813093	2L_3813093_SNP [dm3] 2L_3813093_SNP [dm6]	T	C	1.713e^-4	0.988	SYNONYMOUS_CODING CG3407	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4767365	X_4767365_SNP [dm3] X_4873332_SNP [dm6]	T	A	1.716e^-4	0.988	DOWNSTREAM CR43495 INTRON CG42594
3R	23501127	3R_23501127_INS [dm3] 3R_27675405_INS [dm6]	G	GTATG	1.721e^-4	0.988	INTRON unc80	TF binding site mE1_TFBS_chinmo
3R	24733335	3R_24733335_SNP [dm3] 3R_28907613_SNP [dm6]	T	C	1.723e^-4	0.988	INTRON Doa	TF binding site mE1_TFBS_chinmo
2R	10527673	2R_10527673_SNP [dm3] 2R_14640168_SNP [dm6]	A	G	1.747e^-4	0.988	DOWNSTREAM CG12862 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3893719	X_3893719_SNP [dm3] X_3999686_SNP [dm6]	T	A	1.755e^-4	0.988	INTERGENIC
X	10792850	X_10792850_SNP [dm3] X_10898817_SNP [dm6]	C	T	1.759e^-4	0.988	SYNONYMOUS_CODING CG1582	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16613202	3R_16613202_SNP [dm3] 3R_20787480_SNP [dm6]	T	C	1.761e^-4	0.988	INTRON Syp
3R	23943992	3R_23943992_SNP [dm3] 3R_28118270_SNP [dm6]	C	T	1.765e^-4	0.988	INTERGENIC
2R	11834041	2R_11834041_SNP [dm3] 2R_15946536_SNP [dm6]	A	G	1.788e^-4	0.988	SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other
X	4070736	X_4070736_SNP [dm3] X_4176703_SNP [dm6]	G	C	1.792e^-4	0.988	INTRON Fas2
2L	3012522	2L_3012522_SNP [dm3] 2L_3012522_SNP [dm6]	C	A	1.795e^-4	0.988	INTRON CG17265	TF binding site mE1_TFBS_inv
3L	11590454	3L_11590454_SNP [dm3] 3L_11597354_SNP [dm6]	C	A	1.799e^-4	0.988	UTR_5_PRIME CG7368
X	4764612	X_4764612_SNP [dm3] X_4870579_SNP [dm6]	G	A	1.802e^-4	0.988	INTRON CG42594
2R	10527832	2R_10527832_SNP [dm3] 2R_14640327_SNP [dm6]	G	C	1.814e^-4	0.988	NON_SYNONYMOUS_CODING CG12862 DOWNSTREAM CG42715	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6964194	2L_6964194_SNP [dm3] 2L_6964194_SNP [dm6]	T	A	1.816e^-4	0.988	UPSTREAM Coprox & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	14462324	2L_14462324_DEL [dm3] 2L_14462324_DEL [dm6]	TGGATGGGCAAT...	T	1.818e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	22293908	2L_22293908_SNP [dm3] 2L_22293908_SNP [dm6]	A	G	1.819e^-4	0.988	INTERGENIC
3L	13250316	3L_13250316_SNP [dm3] 3L_13257216_SNP [dm6]	G	A	1.826e^-4	0.988	INTRON caps
X	10214797	X_10214797_SNP [dm3] X_10320764_SNP [dm6]	T	C	1.828e^-4	0.988	INTRON alpha-Man-I
3R	18460863	3R_18460863_SNP [dm3] 3R_22635141_SNP [dm6]	A	T	1.830e^-4	0.988	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	21230222	3R_21230222_SNP [dm3] 3R_25404500_SNP [dm6]	T	G	1.839e^-4	0.988	INTRON Fur1
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	1.855e^-4	0.988	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14181281	2R_14181281_SNP [dm3] 2R_18293776_SNP [dm6]	T	G	1.868e^-4	0.988	UTR_5_PRIME CG14502 UPSTREAM CG14502 & 1 other INTRON CG14502 & 1 other	TF binding site mE1_TFBS_HSA
2L	9426043	2L_9426043_SNP [dm3] 2L_9426043_SNP [dm6]	G	A	1.877e^-4	0.988	SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
3R	10730838	3R_10730838_SNP [dm3] 3R_14905116_SNP [dm6]	A	G	1.881e^-4	0.988	INTERGENIC
3R	26097154	3R_26097154_SNP [dm3] 3R_30271432_SNP [dm6]	T	C	1.886e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	4962219	2R_4962219_SNP [dm3] 2R_9074714_SNP [dm6]	T	A	1.888e^-4	0.988	INTRON ana
2L	11688583	2L_11688583_INS [dm3] 2L_11688583_INS [dm6]	C	CC	1.890e^-4	0.988	INTERGENIC
3R	25752518	3R_25752518_DEL [dm3] 3R_29926796_DEL [dm6]	CACAGC	G	1.895e^-4	0.988	UPSTREAM Jon99Ci & 1 other INTERGENIC
3R	16926790	3R_16926790_SNP [dm3] 3R_21101068_SNP [dm6]	C	T	1.906e^-4	0.988	SYNONYMOUS_CODING CG7044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	20519190	2R_20519190_SNP [dm3] 2R_24631667_SNP [dm6]	C	T	1.907e^-4	0.988	NON_SYNONYMOUS_CODING Cyp9c1 INTRON CG13594 EXON CR43787
3L	12098081	3L_12098081_SNP [dm3] 3L_12104981_SNP [dm6]	T	C	1.916e^-4	0.988	INTERGENIC
X	2326487	X_2326487_SNP [dm3] X_2432454_SNP [dm6]	A	C	1.921e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_sens
3R	19910028	3R_19910028_DEL [dm3] 3R_24084306_DEL [dm6]	CTCAAAATGTTCATATCCGC...	C	1.924e^-4	0.988	INTRON 4EHP
2R	11302181	2R_11302181_SNP [dm3] 2R_15414676_SNP [dm6]	C	T	1.939e^-4	0.988	INTRON CG43729
2L	8178842	2L_8178842_SNP [dm3] 2L_8178842_SNP [dm6]	A	G	1.943e^-4	0.988	SYNONYMOUS_CODING Piezo
X	20470155	X_20470155_SNP [dm3] X_20599128_SNP [dm6]	G	T	1.943e^-4	0.988	INTRON RunxA
3R	13471833	3R_13471833_DEL [dm3] 3R_17646111_DEL [dm6]	GTTTCAAAGCATCACGCCG...	G	1.946e^-4	0.988	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20209970	3R_20209970_SNP [dm3] 3R_24384248_SNP [dm6]	A	T	1.948e^-4	0.988	SYNONYMOUS_CODING CG17780
X	20470137	X_20470137_SNP [dm3] X_20599110_SNP [dm6]	C	T	1.950e^-4	0.988	INTRON RunxA
3L	12096021	3L_12096021_SNP [dm3] 3L_12102921_SNP [dm6]	T	A	1.957e^-4	0.988	INTERGENIC
2L	16609121	2L_16609121_SNP [dm3] 2L_16609121_SNP [dm6]	A	G	1.961e^-4	0.988	SYNONYMOUS_CODING CG4631 INTRON CG42389
3R	21228155	3R_21228155_SNP [dm3] 3R_25402433_SNP [dm6]	G	T	1.962e^-4	0.988	INTRON Fur1
3R	23943824	3R_23943824_SNP [dm3] 3R_28118102_SNP [dm6]	G	A	1.964e^-4	0.988	INTERGENIC
3R	15204253	3R_15204253_SNP [dm3] 3R_19378531_SNP [dm6]	C	T	1.971e^-4	0.988	INTRON Ino80
3R	14945061	3R_14945061_SNP [dm3] 3R_19119339_SNP [dm6]	G	A	1.996e^-4	0.988	INTRON CG6040
3R	16610599	3R_16610599_SNP [dm3] 3R_20784877_SNP [dm6]	G	A	2.010e^-4	0.988	INTRON Syp	TF binding site mE1_TFBS_chinmo
3R	14187180	3R_14187180_SNP [dm3] 3R_18361458_SNP [dm6]	A	T	2.013e^-4	0.988	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
X	8377442	X_8377442_SNP [dm3] X_8483409_SNP [dm6]	T	C	2.017e^-4	0.988	UPSTREAM CR43834 DOWNSTREAM Cp38 INTRON CG33223
3R	16029632	3R_16029632_SNP [dm3] 3R_20203910_SNP [dm6]	G	A	2.026e^-4	0.988	UPSTREAM Nlg4 INTERGENIC
X	20307114	X_20307114_INS [dm3] X_20436087_INS [dm6]	C	CC	2.034e^-4	0.988	INTRON CG1695
X	20438560	X_20438560_SNP [dm3] X_20567533_SNP [dm6]	G	T	2.035e^-4	0.988	DOWNSTREAM RunxB INTERGENIC
3L	12337246	3L_12337246_SNP [dm3] 3L_12344146_SNP [dm6]	T	A	2.040e^-4	0.988	INTRON CrzR
3R	9567215	3R_9567215_SNP [dm3] 3R_13741493_SNP [dm6]	T	C	2.043e^-4	0.988	INTRON CG34383
2L	3435247	2L_3435247_SNP [dm3] 2L_3435247_SNP [dm6]	C	T	2.049e^-4	0.988	INTERGENIC
3L	11342829	3L_11342829_SNP [dm3] 3L_11349729_SNP [dm6]	C	T	2.052e^-4	0.988	EXON CR45251
3R	20306890	3R_20306890_SNP [dm3] 3R_24481168_SNP [dm6]	T	C	2.055e^-4	0.988	INTERGENIC
3R	20271070	3R_20271070_DEL [dm3] 3R_24445348_DEL [dm6]	CG	C	2.061e^-4	0.988	INTRON nAChRalpha1
3R	25217525	3R_25217525_SNP [dm3] 3R_29391803_SNP [dm6]	T	C	2.062e^-4	0.988	INTRON Ptp99A
3R	16723278	3R_16723278_DEL [dm3] 3R_20897556_DEL [dm6]	TATATAGC	T	2.062e^-4	0.988	UPSTREAM CG10830 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	10782877	X_10782877_SNP [dm3] X_10888844_SNP [dm6]	T	G	2.073e^-4	0.988	INTRON Ork1
2R	14438855	2R_14438855_SNP [dm3] 2R_18551350_SNP [dm6]	A	T	2.074e^-4	0.988	INTERGENIC
3R	23285692	3R_23285692_SNP [dm3] 3R_27459970_SNP [dm6]	A	G	2.087e^-4	0.988	INTERGENIC
3R	23943854	3R_23943854_SNP [dm3] 3R_28118132_SNP [dm6]	G	A	2.093e^-4	0.988	INTERGENIC
2R	10582811	2R_10582811_SNP [dm3] 2R_14695306_SNP [dm6]	T	C	2.099e^-4	0.988	INTRON mspo
3L	3525545	3L_3525545_SNP [dm3] 3L_3525545_SNP [dm6]	T	G	2.102e^-4	0.988	INTRON Eip63E	TF binding site mE1_TFBS_sens
3R	16029655	3R_16029655_DEL [dm3] 3R_20203933_DEL [dm6]	CA	C	2.103e^-4	0.988	UPSTREAM Nlg4 INTERGENIC
3L	13326409	3L_13326409_SNP [dm3] 3L_13333309_SNP [dm6]	T	C	2.109e^-4	0.988	INTERGENIC
3L	1471028	3L_1471028_SNP [dm3] 3L_1471028_SNP [dm6]	G	T	2.115e^-4	0.988	UTR_3_PRIME CG32319 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	1436328	2L_1436328_SNP [dm3] 2L_1436328_SNP [dm6]	G	A	2.130e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6332117	X_6332117_SNP [dm3] X_6438084_SNP [dm6]	T	C	2.143e^-4	0.988	INTRON CG42340
2R	11847373	2R_11847373_SNP [dm3] 2R_15959868_SNP [dm6]	C	A	2.145e^-4	0.988	SYNONYMOUS_CODING Strn-Mlck UTR_3_PRIME Strn-Mlck
X	4763369	X_4763369_SNP [dm3] X_4869336_SNP [dm6]	G	T	2.146e^-4	0.988	INTRON CG42594
3R	23497074	3R_23497074_SNP [dm3] 3R_27671352_SNP [dm6]	G	A	2.152e^-4	0.988	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
X	10793124	X_10793124_SNP [dm3] X_10899091_SNP [dm6]	A	T	2.156e^-4	0.988	UPSTREAM CG15208 INTRON CG1582	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9935242	3L_9935242_SNP [dm3] 3L_9942142_SNP [dm6]	A	C	2.159e^-4	0.988	INTRON CG34356
X	10214619	X_10214619_SNP [dm3] X_10320586_SNP [dm6]	T	A	2.162e^-4	0.988	INTRON alpha-Man-I
3R	7937404	3R_7937404_SNP [dm3] 3R_12111682_SNP [dm6]	C	T	2.163e^-4	0.988	DOWNSTREAM dpr17 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15591834	3R_15591834_SNP [dm3] 3R_19766112_SNP [dm6]	A	T	2.165e^-4	0.988	INTRON GluClalpha
3L	8660529	3L_8660529_DEL [dm3] 3L_8667429_DEL [dm6]	AA	A	2.170e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	7404664	2R_7404664_SNP [dm3] 2R_11517159_SNP [dm6]	T	A	2.172e^-4	0.988	INTERGENIC
2L	4649649	2L_4649649_SNP [dm3] 2L_4649649_SNP [dm6]	G	A	2.173e^-4	0.988	INTERGENIC
3R	20386105	3R_20386105_SNP [dm3] 3R_24560383_SNP [dm6]	A	C	2.177e^-4	0.988	SPLICE_SITE_REGION CG13624 SYNONYMOUS_CODING CG13624 UTR_3_PRIME CG13624	TF binding site mE1_TFBS_cad
3R	16315118	3R_16315118_SNP [dm3] 3R_20489396_SNP [dm6]	T	C	2.188e^-4	0.988	INTERGENIC
X	10214690	X_10214690_SNP [dm3] X_10320657_SNP [dm6]	T	C	2.195e^-4	0.988	INTRON alpha-Man-I
2R	10529689	2R_10529689_SNP [dm3] 2R_14642184_SNP [dm6]	C	T	2.199e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10529690	2R_10529690_SNP [dm3] 2R_14642185_SNP [dm6]	G	A	2.199e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10529779	2R_10529779_SNP [dm3] 2R_14642274_SNP [dm6]	C	T	2.199e^-4	0.988	INTERGENIC
2R	10542465	2R_10542465_SNP [dm3] 2R_14654960_SNP [dm6]	A	T	2.201e^-4	0.988	INTERGENIC
2L	7330445	2L_7330445_SNP [dm3] 2L_7330445_SNP [dm6]	A	G	2.215e^-4	0.988	UPSTREAM CR45304 INTERGENIC
3R	16315962	3R_16315962_SNP [dm3] 3R_20490240_SNP [dm6]	G	A	2.217e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5496172	2L_5496172_SNP [dm3] 2L_5496172_SNP [dm6]	T	G	2.226e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18253763	3L_18253763_SNP [dm3] 3L_18260663_SNP [dm6]	C	T	2.235e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	5508808	3L_5508808_SNP [dm3] 3L_5515708_SNP [dm6]	T	C	2.245e^-4	0.988	INTRON Lkr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17807294	2R_17807294_SNP [dm3] 2R_21919789_SNP [dm6]	T	G	2.246e^-4	0.988	INTRON Fili
3L	5677294	3L_5677294_SNP [dm3] 3L_5684194_SNP [dm6]	G	A	2.248e^-4	0.988	INTRON sif
3R	23681424	3R_23681424_INS [dm3] 3R_27855702_INS [dm6]	T	TT	2.249e^-4	0.988	INTRON CG34353
3L	18444440	3L_18444440_SNP [dm3] 3L_18451340_SNP [dm6]	T	A	2.250e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	14287465	X_14287465_INS [dm3] X_14393432_INS [dm6]	A	ATAA	2.258e^-4	0.988	INTRON dpr8
2R	14181569	2R_14181569_SNP [dm3] 2R_18294064_SNP [dm6]	C	G	2.261e^-4	0.988	NON_SYNONYMOUS_CODING CG14502 UPSTREAM CG18536 INTRON sbb	TF binding site mE1_TFBS_HSA
2L	12885765	2L_12885765_SNP [dm3] 2L_12885765_SNP [dm6]	T	C	2.263e^-4	0.988	INTERGENIC
3R	23516536	3R_23516536_SNP [dm3] 3R_27690814_SNP [dm6]	A	T	2.271e^-4	0.988	SYNONYMOUS_CODING CG12880	TF binding site mE1_TFBS_chinmo
3R	12932815	3R_12932815_SNP [dm3] 3R_17107093_SNP [dm6]	G	C	2.279e^-4	0.988	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15825948	3R_15825948_SNP [dm3] 3R_20000226_SNP [dm6]	T	C	2.294e^-4	0.988	INTRON Hs6st
X	8529958	X_8529958_SNP [dm3] X_8635925_SNP [dm6]	A	T	2.297e^-4	0.988	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10529819	2R_10529819_SNP [dm3] 2R_14642314_SNP [dm6]	C	T	2.301e^-4	0.988	INTERGENIC
3L	8645544	3L_8645544_SNP [dm3] 3L_8652444_SNP [dm6]	A	C	2.304e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	4972918	2L_4972918_SNP [dm3] 2L_4972918_SNP [dm6]	T	C	2.304e^-4	0.988	SYNONYMOUS_CODING CG14043 INTRON l_2_05714	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	12809928	2R_12809928_SNP [dm3] 2R_16922423_SNP [dm6]	C	A	2.321e^-4	0.988	INTERGENIC
3R	15148173	3R_15148173_SNP [dm3] 3R_19322451_SNP [dm6]	G	T	2.333e^-4	0.988	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7064795	2R_7064795_SNP [dm3] 2R_11177290_SNP [dm6]	A	T	2.343e^-4	0.988	INTRON shn
2L	760097	2L_760097_SNP [dm3] 2L_760097_SNP [dm6]	T	C	2.352e^-4	0.988	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo
3R	19266380	3R_19266380_SNP [dm3] 3R_23440658_SNP [dm6]	T	A	2.362e^-4	0.988	INTRON CG4374
3R	5556013	3R_5556013_SNP [dm3] 3R_9730291_SNP [dm6]	A	C	2.369e^-4	0.988	START_GAINED FoxP UTR_5_PRIME FoxP DOWNSTREAM alphaTub85E	TF binding site BDTNP1_TFBS_dl
2L	12096457	2L_12096457_SNP [dm3] 2L_12096457_SNP [dm6]	C	A	2.376e^-4	0.988	UTR_5_PRIME CG6712 UPSTREAM Mt2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11351726	3L_11351726_SNP [dm3] 3L_11358626_SNP [dm6]	G	A	2.381e^-4	0.988	INTERGENIC
2R	10582988	2R_10582988_SNP [dm3] 2R_14695483_SNP [dm6]	G	A	2.383e^-4	0.988	INTRON mspo
3L	16818395	3L_16818395_SNP [dm3] 3L_16825295_SNP [dm6]	A	T	2.385e^-4	0.988	INTRON CG13024
2R	7734894	2R_7734894_SNP [dm3] 2R_11847389_SNP [dm6]	A	T	2.395e^-4	0.988	INTRON Sln
2R	7734895	2R_7734895_SNP [dm3] 2R_11847390_SNP [dm6]	A	G	2.395e^-4	0.988	INTRON Sln
2R	7734898	2R_7734898_SNP [dm3] 2R_11847393_SNP [dm6]	A	T	2.395e^-4	0.988	INTRON Sln
2R	7734899	2R_7734899_INS [dm3] 2R_11847394_INS [dm6]	T	TT	2.395e^-4	0.988	INTRON Sln
3R	8366867	3R_8366867_SNP [dm3] 3R_12541145_SNP [dm6]	C	T	2.397e^-4	0.988	INTRON Octbeta3R
3R	19736405	3R_19736405_SNP [dm3] 3R_23910683_SNP [dm6]	A	T	2.400e^-4	0.988	INTRON sba
2L	15138860	2L_15138860_SNP [dm3] 2L_15138860_SNP [dm6]	T	C	2.404e^-4	0.988	INTERGENIC
2L	12529687	2L_12529687_SNP [dm3] 2L_12529687_SNP [dm6]	C	T	2.406e^-4	0.988	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	16487744	2L_16487744_SNP [dm3] 2L_16487744_SNP [dm6]	A	C	2.407e^-4	0.988	UPSTREAM CG4580 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	3784577	2L_3784577_SNP [dm3] 2L_3784577_SNP [dm6]	A	C	2.415e^-4	0.988	UPSTREAM CG31960 DOWNSTREAM bowl INTERGENIC
2L	5677243	2L_5677243_SNP [dm3] 2L_5677243_SNP [dm6]	A	G	2.416e^-4	0.988	INTERGENIC
3L	7853310	3L_7853310_SNP [dm3] 3L_7860210_SNP [dm6]	T	A	2.422e^-4	0.988	INTRON Pdp1
3R	23493810	3R_23493810_SNP [dm3] 3R_27668088_SNP [dm6]	C	T	2.430e^-4	0.988	INTRON unc80
X	4761281	X_4761281_SNP [dm3] X_4867248_SNP [dm6]	G	T	2.432e^-4	0.988	INTRON CG42594
2L	14462451	2L_14462451_SNP [dm3] 2L_14462451_SNP [dm6]	A	C	2.433e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	9790543	3L_9790543_SNP [dm3] 3L_9797443_SNP [dm6]	C	G	2.435e^-4	0.988	SYNONYMOUS_CODING Zasp67 UPSTREAM Ilp1
2R	3812699	2R_3812699_SNP [dm3] 2R_7925194_SNP [dm6]	T	A	2.437e^-4	0.988	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	14067651	3R_14067651_SNP [dm3] 3R_18241929_SNP [dm6]	A	C	2.440e^-4	0.988	UPSTREAM 14-3-3epsilon INTRON CG7156	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	13023890	2L_13023890_SNP [dm3] 2L_13023890_SNP [dm6]	C	G	2.447e^-4	0.988	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad
3R	26196342	3R_26196342_DEL [dm3] 3R_30370620_DEL [dm6]	GG	G	2.453e^-4	0.988	UTR_3_PRIME hdc
2L	15139143	2L_15139143_INS [dm3] 2L_15139143_INS [dm6]	G	GTGTAATAA	2.454e^-4	0.988	INTERGENIC
X	3093176	X_3093176_INS [dm3] X_3199143_INS [dm6]	T	TG	2.462e^-4	0.988	INTRON dnc
3L	8644432	3L_8644432_SNP [dm3] 3L_8651332_SNP [dm6]	T	G	2.464e^-4	0.988	DOWNSTREAM Pex7 INTERGENIC	TF binding site mE1_TFBS_cad
2L	12234561	2L_12234561_SNP [dm3] 2L_12234561_SNP [dm6]	A	G	2.479e^-4	0.988	INTRON aret
3R	19736429	3R_19736429_SNP [dm3] 3R_23910707_SNP [dm6]	T	C	2.481e^-4	0.988	INTRON sba
3R	13512727	3R_13512727_SNP [dm3] 3R_17687005_SNP [dm6]	T	C	2.492e^-4	0.988	UTR_5_PRIME CG31249 DOWNSTREAM osa
2L	10654521	2L_10654521_SNP [dm3] 2L_10654521_SNP [dm6]	A	G	2.497e^-4	0.988	DOWNSTREAM CG17098 INTERGENIC
3R	15249274	3R_15249274_SNP [dm3] 3R_19423552_SNP [dm6]	T	C	2.503e^-4	0.988	DOWNSTREAM CG3517 INTRON CG31221
3R	7274733	3R_7274733_SNP [dm3] 3R_11449011_SNP [dm6]	C	A	2.517e^-4	0.988	INTRON CG17230 & 1 other
3L	12337328	3L_12337328_SNP [dm3] 3L_12344228_SNP [dm6]	G	C	2.526e^-4	0.988	INTRON CrzR
2L	14707331	2L_14707331_SNP [dm3] 2L_14707331_SNP [dm6]	T	A	2.536e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	3686425	3L_3686425_SNP [dm3] 3L_3686425_SNP [dm6]	G	A	2.543e^-4	0.988	INTERGENIC
3R	23944020	3R_23944020_SNP [dm3] 3R_28118298_SNP [dm6]	G	C	2.548e^-4	0.988	INTERGENIC
3L	9592577	3L_9592577_SNP [dm3] 3L_9599477_SNP [dm6]	G	C	2.558e^-4	0.988	SYNONYMOUS_CODING CG3222	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23458762	3R_23458762_SNP [dm3] 3R_27633040_SNP [dm6]	G	A	2.562e^-4	0.988	SYNONYMOUS_CODING Tusp	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo
2R	14204558	2R_14204558_SNP [dm3] 2R_18317053_SNP [dm6]	G	C	2.573e^-4	0.988	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16733513	2R_16733513_SNP [dm3] 2R_20846008_SNP [dm6]	T	A	2.574e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8238323	3L_8238323_SNP [dm3] 3L_8245223_SNP [dm6]	A	T	2.574e^-4	0.988	INTRON Dscam4
2R	4480649	2R_4480649_SNP [dm3] 2R_8593144_SNP [dm6]	G	T	2.579e^-4	0.988	DOWNSTREAM CG43183 & 1 other INTERGENIC
2R	4527064	2R_4527064_INS [dm3] 2R_8639559_INS [dm6]	A	AACAG	2.593e^-4	0.988	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6845499	2L_6845499_SNP [dm3] 2L_6845499_SNP [dm6]	A	C	2.601e^-4	0.988	INTERGENIC
X	3053963	X_3053963_SNP [dm3] X_3159930_SNP [dm6]	C	T	2.606e^-4	0.988	INTRON N	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	4962089	2R_4962089_INS [dm3] 2R_9074584_INS [dm6]	T	TT	2.610e^-4	0.988	INTRON ana
2R	7113630	2R_7113630_SNP [dm3] 2R_11226125_SNP [dm6]	T	A	2.613e^-4	0.988	UTR_3_PRIME CG7737 DOWNSTREAM metro	TF binding site mE1_TFBS_cad
3L	10921270	3L_10921270_SNP [dm3] 3L_10928170_SNP [dm6]	C	A	2.620e^-4	0.988	INTERGENIC
2L	10333615	2L_10333615_SNP [dm3] 2L_10333615_SNP [dm6]	G	A	2.623e^-4	0.988	UPSTREAM GATAd DOWNSTREAM CG5037 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18603674	3L_18603674_SNP [dm3] 3L_18610574_SNP [dm6]	T	G	2.629e^-4	0.988	NON_SYNONYMOUS_CODING CG32201 INTRON CG4174 & 1 other
2L	2911300	2L_2911300_SNP [dm3] 2L_2911300_SNP [dm6]	C	T	2.631e^-4	0.988	INTRON lilli
2L	1582939	2L_1582939_DEL [dm3] 2L_1582939_DEL [dm6]	AAGTCA	A	2.646e^-4	0.988	INTRON haf
X	2327196	X_2327196_SNP [dm3] X_2433163_SNP [dm6]	T	A	2.658e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	13748145	3L_13748145_SNP [dm3] 3L_13755045_SNP [dm6]	A	T	2.670e^-4	0.988	INTRON bru-3
3R	25752511	3R_25752511_SNP [dm3] 3R_29926789_SNP [dm6]	T	A	2.671e^-4	0.988	UPSTREAM Jon99Ci & 1 other INTERGENIC
X	10214630	X_10214630_SNP [dm3] X_10320597_SNP [dm6]	G	A	2.671e^-4	0.988	INTRON alpha-Man-I
3R	20234925	3R_20234925_SNP [dm3] 3R_24409203_SNP [dm6]	G	T	2.682e^-4	0.988	INTRON nAChRalpha1
3R	20011570	3R_20011570_SNP [dm3] 3R_24185848_SNP [dm6]	G	C	2.683e^-4	0.988	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	20029969	2L_20029969_SNP [dm3] 2L_20029969_SNP [dm6]	A	T	2.694e^-4	0.988	INTRON sNPF
3L	11590727	3L_11590727_SNP [dm3] 3L_11597627_SNP [dm6]	C	T	2.700e^-4	0.988	INTRON CG7368
3R	7732648	3R_7732648_SNP [dm3] 3R_11906926_SNP [dm6]	T	C	2.702e^-4	0.988	INTRON Cad87A
3R	18201709	3R_18201709_SNP [dm3] 3R_22375987_SNP [dm6]	C	A	2.706e^-4	0.988	UTR_5_PRIME CG18596 DOWNSTREAM CG7069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	9262186	2R_9262186_SNP [dm3] 2R_13374681_SNP [dm6]	T	C	2.708e^-4	0.988	INTERGENIC
2R	10542424	2R_10542424_SNP [dm3] 2R_14654919_SNP [dm6]	G	A	2.711e^-4	0.988	INTERGENIC
2L	2462859	2L_2462859_SNP [dm3] 2L_2462859_SNP [dm6]	T	G	2.713e^-4	0.988	DOWNSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	11302147	2R_11302147_SNP [dm3] 2R_15414642_SNP [dm6]	A	T	2.714e^-4	0.988	INTRON CG43729
X	16772213	X_16772213_SNP [dm3] X_16878180_SNP [dm6]	C	T	2.716e^-4	0.988	INTERGENIC
2L	4043822	2L_4043822_SNP [dm3] 2L_4043822_SNP [dm6]	T	A	2.718e^-4	0.988	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10583251	2R_10583251_SNP [dm3] 2R_14695746_SNP [dm6]	C	A	2.719e^-4	0.988	INTRON mspo
3R	8131489	3R_8131489_SNP [dm3] 3R_12305767_SNP [dm6]	C	G	2.726e^-4	0.988	INTERGENIC
3R	15827804	3R_15827804_SNP [dm3] 3R_20002082_SNP [dm6]	G	T	2.728e^-4	0.988	INTRON Hs6st	TF binding site mE1_TFBS_cad
3L	10300552	3L_10300552_SNP [dm3] 3L_10307452_SNP [dm6]	A	T	2.735e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25868832	3R_25868832_SNP [dm3] 3R_30043110_SNP [dm6]	T	A	2.737e^-4	0.988	UPSTREAM Sry-delta DOWNSTREAM Sry-alpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2462854	2L_2462854_SNP [dm3] 2L_2462854_SNP [dm6]	G	C	2.737e^-4	0.988	DOWNSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	11674693	3L_11674693_DEL [dm3] 3L_11681593_DEL [dm6]	AA	A	2.746e^-4	0.988	UPSTREAM TfIIEalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	13973040	X_13973040_SNP [dm3] X_14079007_SNP [dm6]	G	A	2.754e^-4	0.988	INTERGENIC
3R	23548751	3R_23548751_SNP [dm3] 3R_27723029_SNP [dm6]	A	C	2.755e^-4	0.988	INTERGENIC
3L	18297223	3L_18297223_SNP [dm3] 3L_18304123_SNP [dm6]	A	T	2.768e^-4	0.988	UTR_5_PRIME grim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6255148	2L_6255148_DEL [dm3] 2L_6255148_DEL [dm6]	CCGTGTGAACTTC...	C	2.774e^-4	0.988	UPSTREAM CG9486 INTRON Ddr
2L	9193364	2L_9193364_SNP [dm3] 2L_9193364_SNP [dm6]	T	C	2.774e^-4	0.988	INTRON tai
2L	17467597	2L_17467597_SNP [dm3] 2L_17467597_SNP [dm6]	A	G	2.776e^-4	0.988	INTRON BicD	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19689681	3R_19689681_SNP [dm3] 3R_23863959_SNP [dm6]	C	A	2.781e^-4	0.988	INTRON Pli	TF binding site BDTNP1_TFBS_twi
3L	13196617	3L_13196617_SNP [dm3] 3L_13203517_SNP [dm6]	G	A	2.791e^-4	0.988	INTERGENIC
3R	23496937	3R_23496937_SNP [dm3] 3R_27671215_SNP [dm6]	C	A	2.798e^-4	0.988	INTRON unc80	TF binding site mE1_TFBS_cad
2R	14180990	2R_14180990_SNP [dm3] 2R_18293485_SNP [dm6]	T	C	2.799e^-4	0.988	UTR_5_PRIME CG14502 UPSTREAM CG14502 INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	23436746	3R_23436746_SNP [dm3] 3R_27611024_SNP [dm6]	A	G	2.802e^-4	0.988	INTRON Tusp
2R	4148014	2R_4148014_SNP [dm3] 2R_8260509_SNP [dm6]	G	A	2.807e^-4	0.988	DOWNSTREAM CG2291 & 2 others INTERGENIC
2L	7011429	2L_7011429_SNP [dm3] 2L_7011429_SNP [dm6]	G	T	2.807e^-4	0.988	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	300887	3L_300887_DEL [dm3] 3L_300887_DEL [dm6]	ATTTA	A	2.811e^-4	0.988	FRAME_SHIFT RhoGEF3 SPLICE_SITE_REGION RhoGEF3 INTRON RhoGEF3	TF binding site mE1_TFBS_cad
2R	16493034	2R_16493034_SNP [dm3] 2R_20605529_SNP [dm6]	C	T	2.819e^-4	0.988	SYNONYMOUS_CODING bl UPSTREAM mir-7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5534925	3L_5534925_SNP [dm3] 3L_5541825_SNP [dm6]	C	T	2.823e^-4	0.988	INTRON CG10625
3R	16612622	3R_16612622_SNP [dm3] 3R_20786900_SNP [dm6]	A	T	2.828e^-4	0.988	INTRON Syp
2L	1932557	2L_1932557_SNP [dm3] 2L_1932557_SNP [dm6]	A	C	2.829e^-4	0.988	INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	14336340	3L_14336340_DEL [dm3] 3L_14343240_DEL [dm6]	AAAA	A	2.830e^-4	0.988	INTRON fz
3R	23504795	3R_23504795_SNP [dm3] 3R_27679073_SNP [dm6]	G	A	2.836e^-4	0.988	UPSTREAM CG12883 DOWNSTREAM CG5590 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16315078	3R_16315078_SNP [dm3] 3R_20489356_SNP [dm6]	G	A	2.841e^-4	0.988	INTERGENIC
3R	18721370	3R_18721370_SNP [dm3] 3R_22895648_SNP [dm6]	G	C	2.844e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
X	4767255	X_4767255_SNP [dm3] X_4873222_SNP [dm6]	G	A	2.851e^-4	0.988	DOWNSTREAM CR43495 INTRON CG42594
3R	13508693	3R_13508693_SNP [dm3] 3R_17682971_SNP [dm6]	G	T	2.858e^-4	0.988	SYNONYMOUS_CODING CG7655 UPSTREAM alt DOWNSTREAM CG31251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	7967394	3R_7967394_SNP [dm3] 3R_12141672_SNP [dm6]	T	C	2.859e^-4	0.988	INTRON dpr15	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sbb
3L	14337087	3L_14337087_SNP [dm3] 3L_14343987_SNP [dm6]	A	T	2.866e^-4	0.988	INTRON fz
3R	16587989	3R_16587989_SNP [dm3] 3R_20762267_SNP [dm6]	A	C	2.880e^-4	0.988	START_GAINED CG31195 UTR_5_PRIME CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20011499	3R_20011499_SNP [dm3] 3R_24185777_SNP [dm6]	G	A	2.893e^-4	0.988	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	13034972	3L_13034972_SNP [dm3] 3L_13041872_SNP [dm6]	G	A	2.894e^-4	0.988	UTR_5_PRIME RpS4 UPSTREAM snoRNA:Psi28S-3327a DOWNSTREAM SRm160 INTRON RpS4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	9385673	3R_9385673_SNP [dm3] 3R_13559951_SNP [dm6]	G	T	2.901e^-4	0.988	INTERGENIC
2R	10529634	2R_10529634_SNP [dm3] 2R_14642129_SNP [dm6]	C	A	2.917e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2197042	3L_2197042_SNP [dm3] 3L_2197042_SNP [dm6]	G	A	2.921e^-4	0.988	UTR_5_PRIME CG8960 UPSTREAM CG8960	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10300844	3L_10300844_SNP [dm3] 3L_10307744_SNP [dm6]	A	T	2.923e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10368891	3R_10368891_SNP [dm3] 3R_14543169_SNP [dm6]	G	A	2.926e^-4	0.988	INTRON Pde6
2R	11302295	2R_11302295_SNP [dm3] 2R_15414790_SNP [dm6]	T	C	2.934e^-4	0.988	INTRON CG43729
2L	5684382	2L_5684382_SNP [dm3] 2L_5684382_SNP [dm6]	A	G	2.952e^-4	0.988	INTERGENIC
X	18417343	X_18417343_SNP [dm3] X_18523310_SNP [dm6]	T	A	2.952e^-4	0.988	UPSTREAM CG6481 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12337280	3L_12337280_SNP [dm3] 3L_12344180_SNP [dm6]	G	A	2.953e^-4	0.988	INTRON CrzR
3R	14187186	3R_14187186_SNP [dm3] 3R_18361464_SNP [dm6]	G	A	2.955e^-4	0.988	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
2R	11503021	2R_11503021_SNP [dm3] 2R_15615516_SNP [dm6]	T	C	2.966e^-4	0.988	INTRON CG42524
X	14104334	X_14104334_SNP [dm3] X_14210301_SNP [dm6]	C	A	2.976e^-4	0.988	INTRON l_1_G0007 & 1 other
2L	7390845	2L_7390845_SNP [dm3] 2L_7390845_SNP [dm6]	C	T	2.983e^-4	0.988	UTR_3_PRIME gudu DOWNSTREAM CG5160
3R	15819364	3R_15819364_SNP [dm3] 3R_19993642_SNP [dm6]	G	A	2.988e^-4	0.988	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16704751	X_16704751_SNP [dm3] X_16810718_SNP [dm6]	C	T	2.990e^-4	0.988	UPSTREAM CG4829 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15629554	2L_15629554_SNP [dm3] 2L_15629554_SNP [dm6]	A	T	2.991e^-4	0.988	UPSTREAM CG18480 DOWNSTREAM CG7631 INTERGENIC
3R	18721368	3R_18721368_SNP [dm3] 3R_22895646_SNP [dm6]	A	C	2.997e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11661094	3L_11661094_SNP [dm3] 3L_11667994_SNP [dm6]	C	A	2.997e^-4	0.988	INTRON CG32085
3R	18185987	3R_18185987_SNP [dm3] 3R_22360265_SNP [dm6]	A	C	3.001e^-4	0.988	UTR_3_PRIME Sar1 DOWNSTREAM PSR
3R	9385645	3R_9385645_SNP [dm3] 3R_13559923_SNP [dm6]	A	T	3.004e^-4	0.988	INTERGENIC
2R	14152660	2R_14152660_SNP [dm3] 2R_18265155_SNP [dm6]	G	A	3.008e^-4	0.988	INTERGENIC
3R	13507111	3R_13507111_SNP [dm3] 3R_17681389_SNP [dm6]	C	T	3.017e^-4	0.988	INTRON alt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	3422555	2L_3422555_SNP [dm3] 2L_3422555_SNP [dm6]	G	A	3.025e^-4	0.988	INTRON pgant2
2L	2985775	2L_2985775_SNP [dm3] 2L_2985775_SNP [dm6]	G	A	3.033e^-4	0.988	NON_SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7815975	2R_7815975_SNP [dm3] 2R_11928470_SNP [dm6]	C	T	3.037e^-4	0.988	DOWNSTREAM CR44312 INTERGENIC
3R	16585372	3R_16585372_SNP [dm3] 3R_20759650_SNP [dm6]	C	A	3.045e^-4	0.988	SYNONYMOUS_CODING CG31195 INTRON Syp
X	4684023	X_4684023_SNP [dm3] 2R_14476020_SNP [dm6]	T	C	3.049e^-4	0.988	INTERGENIC	transposable element FlyBase
2L	16606878	2L_16606878_SNP [dm3] 2L_16606878_SNP [dm6]	G	A	3.064e^-4	0.988	SYNONYMOUS_CODING CG31815 UPSTREAM CG4631 INTRON CG42389
3R	8830388	3R_8830388_SNP [dm3] 3R_13004666_SNP [dm6]	A	C	3.068e^-4	0.988	NON_SYNONYMOUS_CODING CG7518	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19266407	3R_19266407_SNP [dm3] 3R_23440685_SNP [dm6]	G	T	3.073e^-4	0.988	INTRON CG4374
2R	11136724	2R_11136724_SNP [dm3] 2R_15249219_SNP [dm6]	A	G	3.074e^-4	0.988	UTR_5_PRIME scb	TF binding site mE1_TFBS_cad
2R	20207687	2R_20207687_SNP [dm3] 2R_24320164_SNP [dm6]	T	G	3.090e^-4	0.988	INTERGENIC
2R	5784919	2R_5784919_SNP [dm3] 2R_9897414_SNP [dm6]	A	C	3.099e^-4	0.988	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12337276	3L_12337276_SNP [dm3] 3L_12344176_SNP [dm6]	A	G	3.101e^-4	0.988	INTRON CrzR
2R	12988726	2R_12988726_SNP [dm3] 2R_17101221_SNP [dm6]	T	A	3.107e^-4	0.988	INTRON CG30456
2R	20396600	2R_20396600_SNP [dm3] 2R_24509077_SNP [dm6]	C	G	3.109e^-4	0.988	DOWNSTREAM Letm1 INTERGENIC
3L	3298115	3L_3298115_SNP [dm3] 3L_3298115_SNP [dm6]	C	G	3.109e^-4	0.988	NON_SYNONYMOUS_CODING CG12009 UPSTREAM mir-955
2L	3853540	2L_3853540_SNP [dm3] 2L_3853540_SNP [dm6]	T	C	3.119e^-4	0.988	DOWNSTREAM CR45451 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13697966	2L_13697966_SNP [dm3] 2L_13697966_SNP [dm6]	G	C	3.123e^-4	0.988	INTRON CG31814
2R	5785120	2R_5785120_SNP [dm3] 2R_9897615_SNP [dm6]	C	T	3.125e^-4	0.988	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	288390	3L_288390_SNP [dm3] 3L_288390_SNP [dm6]	G	A	3.125e^-4	0.988	NON_SYNONYMOUS_CODING RhoGEF3	TF binding site mE1_TFBS_chinmo
3R	8366882	3R_8366882_SNP [dm3] 3R_12541160_SNP [dm6]	A	G	3.126e^-4	0.988	INTRON Octbeta3R
3R	25407034	3R_25407034_SNP [dm3] 3R_29581312_SNP [dm6]	A	C	3.153e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	15589689	3R_15589689_SNP [dm3] 3R_19763967_SNP [dm6]	C	A	3.159e^-4	0.988	INTRON GluClalpha
3R	17949849	3R_17949849_SNP [dm3] 3R_22124127_SNP [dm6]	T	C	3.159e^-4	0.988	UTR_5_PRIME CG42390	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	4252954	X_4252954_SNP [dm3] X_4358921_SNP [dm6]	G	A	3.165e^-4	0.988	INTRON norpA
2L	4611431	2L_4611431_SNP [dm3] 2L_4611431_SNP [dm6]	T	C	3.172e^-4	0.988	INTRON dp
2L	3368319	2L_3368319_SNP [dm3] 2L_3368319_SNP [dm6]	A	G	3.172e^-4	0.988	INTRON CG34394
3R	19736342	3R_19736342_SNP [dm3] 3R_23910620_SNP [dm6]	T	C	3.173e^-4	0.988	INTRON sba
2L	2494332	2L_2494332_SNP [dm3] 2L_2494332_SNP [dm6]	G	C	3.178e^-4	0.988	INTRON oaf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19576125	3R_19576125_SNP [dm3] 3R_23750403_SNP [dm6]	T	A	3.192e^-4	0.988	DOWNSTREAM RanBP3 INTRON Hmgcr	TF binding site mE1_TFBS_cad
3R	20011623	3R_20011623_SNP [dm3] 3R_24185901_SNP [dm6]	G	A	3.193e^-4	0.988	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	13696393	X_13696393_SNP [dm3] X_13802360_SNP [dm6]	G	T	3.205e^-4	0.988	INTRON inaE
3R	18523304	3R_18523304_SNP [dm3] 3R_22697582_SNP [dm6]	A	T	3.211e^-4	0.988	SPLICE_SITE_REGION cd UPSTREAM Cyp6d4 INTRON cd
3R	26176820	3R_26176820_SNP [dm3] 3R_30351098_SNP [dm6]	T	C	3.219e^-4	0.988	INTRON hdc	TF binding site mE1_TFBS_chinmo
3L	7896000	3L_7896000_SNP [dm3] 3L_7902900_SNP [dm6]	G	A	3.235e^-4	0.988	INTRON pbl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3829943	2R_3829943_SNP [dm3] 2R_7942438_SNP [dm6]	C	G	3.250e^-4	0.988	UTR_3_PRIME CG14764 DOWNSTREAM CG30379
2L	6947923	2L_6947923_SNP [dm3] 2L_6947923_SNP [dm6]	G	A	3.260e^-4	0.988	NON_SYNONYMOUS_CODING ihog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14330705	3L_14330705_SNP [dm3] 3L_14337605_SNP [dm6]	T	A	3.261e^-4	0.988	INTRON fz
2L	8235670	2L_8235670_SNP [dm3] 2L_8235670_SNP [dm6]	G	A	3.261e^-4	0.988	INTRON Pvr
X	15560017	X_15560017_SNP [dm3] X_15665984_SNP [dm6]	G	A	3.262e^-4	0.988	UPSTREAM CR43299 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24892743	3R_24892743_SNP [dm3] 3R_29067021_SNP [dm6]	T	A	3.282e^-4	0.988	INTRON CG11873
3L	8879918	3L_8879918_SNP [dm3] 3L_8886818_SNP [dm6]	C	G	3.283e^-4	0.988	SYNONYMOUS_CODING dally
2R	9430323	2R_9430323_SNP [dm3] 2R_13542818_SNP [dm6]	T	A	3.296e^-4	0.988	INTRON CG6145
X	2326859	X_2326859_SNP [dm3] X_2432826_SNP [dm6]	A	T	3.296e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	16315967	3R_16315967_SNP [dm3] 3R_20490245_SNP [dm6]	G	A	3.326e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7895989	3L_7895989_DEL [dm3] 3L_7902889_DEL [dm6]	AGA	A	3.330e^-4	0.988	INTRON pbl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23849917	3R_23849917_SNP [dm3] 3R_28024195_SNP [dm6]	T	C	3.346e^-4	0.988	INTERGENIC
3R	23511833	3R_23511833_SNP [dm3] 3R_27686111_SNP [dm6]	C	T	3.350e^-4	0.988	UTR_5_PRIME CG12880 UTR_3_PRIME CG31055	TF binding site mE1_TFBS_cad
3R	16315991	3R_16315991_SNP [dm3] 3R_20490269_SNP [dm6]	A	G	3.353e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5893480	2L_5893480_SNP [dm3] 2L_5893480_SNP [dm6]	G	A	3.356e^-4	0.988	SYNONYMOUS_CODING Acp26Aa UPSTREAM Acp26Ab
3L	19769849	3L_19769849_SNP [dm3] 3L_19776749_SNP [dm6]	G	A	3.357e^-4	0.988	INTRON CG42637 & 1 other
X	22058066	X_22058066_SNP [dm3] X_22656230_SNP [dm6]	G	T	3.360e^-4	0.988	INTERGENIC
3R	14877890	3R_14877890_SNP [dm3] 3R_19052168_SNP [dm6]	T	G	3.363e^-4	0.988	INTRON cdi
3L	18453603	3L_18453603_SNP [dm3] 3L_18460503_SNP [dm6]	A	T	3.368e^-4	0.988	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	13631874	3R_13631874_SNP [dm3] 3R_17806152_SNP [dm6]	A	G	3.378e^-4	0.988	SYNONYMOUS_CODING CG17801 UPSTREAM CG17802	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8657811	3R_8657811_SNP [dm3] 3R_12832089_SNP [dm6]	G	A	3.382e^-4	0.988	INTERGENIC
2L	3488085	2L_3488085_SNP [dm3] 2L_3488085_SNP [dm6]	C	T	3.387e^-4	0.988	INTRON CG15414
2L	830834	2L_830834_SNP [dm3] 2L_830834_SNP [dm6]	T	G	3.388e^-4	0.988	SYNONYMOUS_CODING dock	TF binding site mE1_TFBS_cad
X	16230841	X_16230841_SNP [dm3] X_16336808_SNP [dm6]	C	T	3.392e^-4	0.988	INTRON Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2326589	X_2326589_SNP [dm3] X_2432556_SNP [dm6]	G	C	3.392e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	6508417	2R_6508417_SNP [dm3] 2R_10620912_SNP [dm6]	T	G	3.397e^-4	0.988	INTRON CG11883
2R	7435539	2R_7435539_SNP [dm3] 2R_11548034_SNP [dm6]	A	G	3.400e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	17321074	2L_17321074_DEL [dm3] 2L_17321074_DEL [dm6]	AT	A	3.404e^-4	0.988	UPSTREAM CG45691 INTERGENIC
3R	5285694	3R_5285694_SNP [dm3] 3R_9459972_SNP [dm6]	T	A	3.410e^-4	0.988	UPSTREAM GstZ2 INTRON GstZ2	regulatory region REDfly_CRMs
2R	3812740	2R_3812740_SNP [dm3] 2R_7925235_SNP [dm6]	A	T	3.417e^-4	0.988	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	3812741	2R_3812741_SNP [dm3] 2R_7925236_SNP [dm6]	T	A	3.417e^-4	0.988	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	6794499	2R_6794499_SNP [dm3] 2R_10906994_SNP [dm6]	T	G	3.417e^-4	0.988	INTERGENIC
X	13316160	X_13316160_SNP [dm3] X_13422127_SNP [dm6]	G	A	3.420e^-4	0.988	INTERGENIC
2R	5829077	2R_5829077_INS [dm3] 2R_9941572_INS [dm6]	A	AGA	3.423e^-4	0.988	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2R	20392453	2R_20392453_SNP [dm3] 2R_24504930_SNP [dm6]	T	A	3.426e^-4	0.988	INTERGENIC
3L	9134705	3L_9134705_SNP [dm3] 3L_9141605_SNP [dm6]	A	T	3.434e^-4	0.988	INTRON nwk
X	2544520	X_2544520_SNP [dm3] X_2650487_SNP [dm6]	T	A	3.437e^-4	0.988	INTRON sgg
3R	7745335	3R_7745335_SNP [dm3] 3R_11919613_SNP [dm6]	A	T	3.448e^-4	0.988	INTRON Cad87A
3R	23436841	3R_23436841_SNP [dm3] 3R_27611119_SNP [dm6]	A	G	3.455e^-4	0.988	INTRON Tusp
3R	18201305	3R_18201305_DEL [dm3] 3R_22375583_DEL [dm6]	AAAACAATGTA...	A	3.458e^-4	0.988	UPSTREAM CG18596 DOWNSTREAM CG7069 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
X	4762016	X_4762016_SNP [dm3] X_4867983_SNP [dm6]	A	T	3.464e^-4	0.988	INTRON CG42594
X	11900211	X_11900211_SNP [dm3] X_12006178_SNP [dm6]	C	G	3.469e^-4	0.988	UPSTREAM CG1806 INTERGENIC
2L	421295	2L_421295_SNP [dm3] 2L_421295_SNP [dm6]	A	G	3.475e^-4	0.988	SYNONYMOUS_CODING CG11885 UPSTREAM CG13692 DOWNSTREAM RpLP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	2382465	2L_2382465_SNP [dm3] 2L_2382465_SNP [dm6]	T	C	3.484e^-4	0.988	SYNONYMOUS_CODING Eogt UPSTREAM CG9870	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17659226	3R_17659226_SNP [dm3] 3R_21833504_SNP [dm6]	G	A	3.489e^-4	0.988	NON_SYNONYMOUS_CODING Gr93a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	17821136	3R_17821136_DEL [dm3] 3R_21995414_DEL [dm6]	TGCTATATTTTCAGATATTT...	T	3.489e^-4	0.988	INTRON Eip93F
3L	424395	3L_424395_SNP [dm3] 3L_424395_SNP [dm6]	A	T	3.499e^-4	0.988	INTERGENIC
X	13973062	X_13973062_SNP [dm3] X_14079029_SNP [dm6]	A	G	3.499e^-4	0.988	INTERGENIC
2L	7405793	2L_7405793_DEL [dm3] 2L_7405793_DEL [dm6]	CA	C	3.499e^-4	0.988	INTRON CG5177
3R	23449549	3R_23449549_SNP [dm3] 3R_27623827_SNP [dm6]	C	T	3.500e^-4	0.988	SYNONYMOUS_CODING CG5612 INTRON Tusp
2R	20699815	2R_20699815_SNP [dm3] 2R_24812292_SNP [dm6]	A	T	3.528e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20903748	2L_20903748_SNP [dm3] 2L_20903748_SNP [dm6]	T	C	3.534e^-4	0.988	INTRON sky & 1 other
3R	23517156	3R_23517156_SNP [dm3] 3R_27691434_SNP [dm6]	C	G	3.534e^-4	0.988	INTRON CG12880	TF binding site mE1_TFBS_chinmo
2L	6707920	2L_6707920_SNP [dm3] 2L_6707920_SNP [dm6]	G	A	3.553e^-4	0.988	INTRON Tsp
3R	19062768	3R_19062768_SNP [dm3] 3R_23237046_SNP [dm6]	G	C	3.560e^-4	0.988	INTRON CG4467
3R	16612339	3R_16612339_SNP [dm3] 3R_20786617_SNP [dm6]	C	T	3.574e^-4	0.988	INTRON Syp
X	17167182	X_17167182_SNP [dm3] X_17273149_SNP [dm6]	G	A	3.588e^-4	0.988	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad
2L	10544367	2L_10544367_DEL [dm3] 2L_10544367_DEL [dm6]	AT	G	3.591e^-4	0.988	UPSTREAM CR44618 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	20148966	3R_20148966_SNP [dm3] 3R_24323244_SNP [dm6]	G	C	3.602e^-4	0.988	NON_SYNONYMOUS_CODING BRWD3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5232407	2R_5232407_SNP [dm3] 2R_9344902_SNP [dm6]	T	A	3.607e^-4	0.988	UPSTREAM Or45a INTRON CG13954 & 1 other
3R	18623014	3R_18623014_SNP [dm3] 3R_22797292_SNP [dm6]	C	T	3.610e^-4	0.988	INTERGENIC
2R	12316948	2R_12316948_SNP [dm3] 2R_16429443_SNP [dm6]	T	A	3.615e^-4	0.988	UTR_3_PRIME Sema-2b INTRON Sema-2b
3R	23285693	3R_23285693_SNP [dm3] 3R_27459971_SNP [dm6]	C	T	3.616e^-4	0.988	INTERGENIC
3L	3691570	3L_3691570_SNP [dm3] 3L_3691570_SNP [dm6]	C	T	3.619e^-4	0.988	INTERGENIC
X	16433564	X_16433564_SNP [dm3] X_16539531_SNP [dm6]	T	C	3.627e^-4	0.988	SYNONYMOUS_CODING CG9903
3L	16233845	3L_16233845_DEL [dm3] 3L_16240745_DEL [dm6]	TT	T	3.631e^-4	0.988	INTERGENIC
3L	12092253	3L_12092253_SNP [dm3] 3L_12099153_SNP [dm6]	G	C	3.637e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16287621	2L_16287621_SNP [dm3] 2L_16287621_SNP [dm6]	G	T	3.639e^-4	0.988	UTR_5_PRIME crp UPSTREAM pkaap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_zfh1
X	4809278	X_4809278_DEL [dm3] X_4915245_DEL [dm6]	TAA	G	3.639e^-4	0.988	DOWNSTREAM CG4041 & 1 other INTERGENIC
2R	4208625	2R_4208625_SNP [dm3] 2R_8321120_SNP [dm6]	G	A	3.646e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	22324827	3R_22324827_SNP [dm3] 3R_26499105_SNP [dm6]	A	T	3.650e^-4	0.988	INTRON plum	TF binding site BDTNP1_TFBS_twi
2R	15184577	2R_15184577_SNP [dm3] 2R_19297072_SNP [dm6]	T	C	3.654e^-4	0.988	INTRON Tab2	TF binding site BDTNP1_TFBS_dl
X	18625922	X_18625922_DEL [dm3] X_18731889_DEL [dm6]	GTACATATGTACAT...	G	3.657e^-4	0.988	UPSTREAM CR45512 & 1 other INTERGENIC
2L	2858774	2L_2858774_SNP [dm3] 2L_2858774_SNP [dm6]	C	T	3.663e^-4	0.988	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15899788	3R_15899788_SNP [dm3] 3R_20074066_SNP [dm6]	A	T	3.665e^-4	0.988	INTERGENIC
3L	7590631	3L_7590631_SNP [dm3] 3L_7597531_SNP [dm6]	A	G	3.670e^-4	0.988	INTRON CG33275
X	4764678	X_4764678_SNP [dm3] X_4870645_SNP [dm6]	T	A	3.672e^-4	0.988	INTRON CG42594
3L	8151739	3L_8151739_SNP [dm3] 3L_8158639_SNP [dm6]	C	T	3.674e^-4	0.988	UTR_5_PRIME CG42445 DOWNSTREAM CG43886 INTRON CG42445
3R	10341413	3R_10341413_SNP [dm3] 3R_14515691_SNP [dm6]	A	G	3.681e^-4	0.988	SYNONYMOUS_CODING Pde6
2L	20886250	2L_20886250_SNP [dm3] 2L_20886250_SNP [dm6]	T	G	3.684e^-4	0.988	UPSTREAM sky INTRON sky & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	3412056	3L_3412056_SNP [dm3] 3L_3412056_SNP [dm6]	G	T	3.689e^-4	0.988	DOWNSTREAM mir-2282 INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	1368935	X_1368935_SNP [dm3] X_1474902_SNP [dm6]	G	A	3.692e^-4	0.988	INTRON Rab27	TF binding site mE1_TFBS_chinmo
2L	16241797	2L_16241797_SNP [dm3] 2L_16241797_SNP [dm6]	A	T	3.695e^-4	0.988	UPSTREAM CG42818 DOWNSTREAM CG42817 INTERGENIC
2R	5785084	2R_5785084_SNP [dm3] 2R_9897579_SNP [dm6]	C	A	3.703e^-4	0.988	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4649466	2L_4649466_SNP [dm3] 2L_4649466_SNP [dm6]	C	T	3.704e^-4	0.988	INTERGENIC
2R	15247394	2R_15247394_SNP [dm3] 2R_19359889_SNP [dm6]	C	A	3.708e^-4	0.988	INTRON CG11961	TF binding site mE1_TFBS_sens
X	4764639	X_4764639_SNP [dm3] X_4870606_SNP [dm6]	G	T	3.708e^-4	0.988	INTRON CG42594
2R	2808645	2R_2808645_SNP [dm3] 2R_6921140_SNP [dm6]	G	A	3.722e^-4	0.988	UTR_3_PRIME CG30158
2R	2828584	2R_2828584_SNP [dm3] 2R_6941079_SNP [dm6]	T	C	3.732e^-4	0.988	INTRON mim
3R	24731841	3R_24731841_SNP [dm3] 3R_28906119_SNP [dm6]	G	A	3.732e^-4	0.988	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	280607	2L_280607_SNP [dm3] 2L_280607_SNP [dm6]	G	A	3.736e^-4	0.988	NON_SYNONYMOUS_CODING smo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	8761365	2L_8761365_SNP [dm3] 2L_8761365_SNP [dm6]	C	T	3.737e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	3326970	3L_3326970_SNP [dm3] 3L_3326970_SNP [dm6]	G	T	3.737e^-4	0.988	INTRON CG11526 & 1 other	TF binding site mE1_TFBS_cnc
X	2326490	X_2326490_SNP [dm3] X_2432457_SNP [dm6]	A	G	3.744e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_sens
3L	8325722	3L_8325722_SNP [dm3] 3L_8332622_SNP [dm6]	T	C	3.745e^-4	0.988	INTERGENIC
3L	9134193	3L_9134193_SNP [dm3] 3L_9141093_SNP [dm6]	G	A	3.750e^-4	0.988	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2695450	3L_2695450_SNP [dm3] 3L_2695450_SNP [dm6]	T	C	3.760e^-4	0.988	INTRON Fife
X	18625912	X_18625912_SNP [dm3] X_18731879_SNP [dm6]	T	C	3.768e^-4	0.988	UPSTREAM CR45512 & 1 other INTERGENIC
2L	20900255	2L_20900255_SNP [dm3] 2L_20900255_SNP [dm6]	G	A	3.775e^-4	0.988	UPSTREAM CR33317 INTRON sky & 1 other
3L	2978010	3L_2978010_SNP [dm3] 3L_2978010_SNP [dm6]	C	G	3.778e^-4	0.988	INTERGENIC
3R	18523202	3R_18523202_SNP [dm3] 3R_22697480_SNP [dm6]	T	C	3.780e^-4	0.988	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
3R	18523219	3R_18523219_SNP [dm3] 3R_22697497_SNP [dm6]	T	G	3.780e^-4	0.988	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
3R	20809631	3R_20809631_SNP [dm3] 3R_24983909_SNP [dm6]	A	G	3.789e^-4	0.988	UPSTREAM tnc INTERGENIC
3L	15435470	3L_15435470_SNP [dm3] 3L_15442370_SNP [dm6]	T	A	3.790e^-4	0.988	INTERGENIC
X	22058067	X_22058067_SNP [dm3] X_22656231_SNP [dm6]	G	T	3.793e^-4	0.988	INTERGENIC
2L	10380475	2L_10380475_SNP [dm3] 2L_10380475_SNP [dm6]	C	T	3.798e^-4	0.988	SYNONYMOUS_CODING gny DOWNSTREAM dpr19	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	14287402	X_14287402_SNP [dm3] X_14393369_SNP [dm6]	C	T	3.807e^-4	0.988	INTRON dpr8
3L	13288791	3L_13288791_SNP [dm3] 3L_13295691_SNP [dm6]	C	G	3.821e^-4	0.988	DOWNSTREAM Sfp70A4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3691587	3L_3691587_SNP [dm3] 3L_3691587_SNP [dm6]	C	T	3.822e^-4	0.988	INTERGENIC
2R	20385310	2R_20385310_SNP [dm3] 2R_24497787_SNP [dm6]	C	T	3.824e^-4	0.988	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10333803	2L_10333803_SNP [dm3] 2L_10333803_SNP [dm6]	G	T	3.827e^-4	0.988	UTR_5_PRIME GATAd UPSTREAM GATAd DOWNSTREAM CG5037	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
X	12174179	X_12174179_SNP [dm3] X_12280146_SNP [dm6]	T	G	3.830e^-4	0.988	INTRON Ten-a
2R	19150938	2R_19150938_SNP [dm3] 2R_23263415_SNP [dm6]	T	C	3.840e^-4	0.988	DOWNSTREAM CG12782 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14157360	2R_14157360_SNP [dm3] 2R_18269855_SNP [dm6]	T	C	3.842e^-4	0.988	INTERGENIC
2R	14157363	2R_14157363_SNP [dm3] 2R_18269858_SNP [dm6]	G	A	3.842e^-4	0.988	INTERGENIC
3L	11648955	3L_11648955_SNP [dm3] 3L_11655855_SNP [dm6]	C	T	3.844e^-4	0.988	INTRON CG32085
2L	10333616	2L_10333616_SNP [dm3] 2L_10333616_SNP [dm6]	T	A	3.845e^-4	0.988	UPSTREAM GATAd DOWNSTREAM CG5037 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7340311	2L_7340311_SNP [dm3] 2L_7340311_SNP [dm6]	A	G	3.846e^-4	0.988	INTRON Wnt6	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	4712659	3R_4712659_SNP [dm3] 3R_8886937_SNP [dm6]	A	G	3.846e^-4	0.988	INTRON pyd
2R	3812722	2R_3812722_SNP [dm3] 2R_7925217_SNP [dm6]	T	C	3.850e^-4	0.988	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	8450862	3R_8450862_SNP [dm3] 3R_12625140_SNP [dm6]	G	A	3.856e^-4	0.988	SYNONYMOUS_CODING Vha55	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23441360	3R_23441360_SNP [dm3] 3R_27615638_SNP [dm6]	T	G	3.865e^-4	0.988	INTRON Tusp
X	16229827	X_16229827_SNP [dm3] X_16335794_SNP [dm6]	G	A	3.871e^-4	0.988	UPSTREAM Dsp1 INTRON Dsp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
3R	12030728	3R_12030728_INS [dm3] 3R_16205006_INS [dm6]	T	TTATT	3.876e^-4	0.988	SPLICE_SITE_REGION mtSSB DOWNSTREAM CG31287 INTRON mtSSB	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	4307316	3L_4307316_SNP [dm3] 3L_4307316_SNP [dm6]	C	T	3.878e^-4	0.988	INTRON dyl
3R	15151190	3R_15151190_SNP [dm3] 3R_19325468_SNP [dm6]	G	C	3.879e^-4	0.988	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17007688	3R_17007688_SNP [dm3] 3R_21181966_SNP [dm6]	T	A	3.880e^-4	0.988	INTRON SNF4Agamma
3R	22261292	3R_22261292_DEL [dm3] 3R_26435570_DEL [dm6]	AAA	A	3.880e^-4	0.988	INTERGENIC
2L	3698394	2L_3698394_SNP [dm3] 2L_3698394_SNP [dm6]	A	G	3.885e^-4	0.988	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
3R	15901587	3R_15901587_SNP [dm3] 3R_20075865_SNP [dm6]	G	C	3.886e^-4	0.988	INTERGENIC
2R	11136762	2R_11136762_SNP [dm3] 2R_15249257_SNP [dm6]	G	A	3.896e^-4	0.988	UTR_5_PRIME scb	TF binding site mE1_TFBS_cad
X	6079238	X_6079238_SNP [dm3] X_6185205_SNP [dm6]	T	C	3.904e^-4	0.988	INTRON Ca-alpha1T
2R	6276482	2R_6276482_SNP [dm3] 2R_10388977_SNP [dm6]	T	A	3.921e^-4	0.988	INTRON CG42732
2R	3435523	2R_3435523_SNP [dm3] 2R_7548018_SNP [dm6]	T	C	3.926e^-4	0.988	INTRON Corin
X	2603199	X_2603199_SNP [dm3] X_2709166_SNP [dm6]	C	T	3.932e^-4	0.988	NON_SYNONYMOUS_CODING CG2681	TF binding site mE1_TFBS_chinmo
3L	3523759	3L_3523759_SNP [dm3] 3L_3523759_SNP [dm6]	C	T	3.935e^-4	0.988	UPSTREAM CR45043 INTRON Eip63E
3R	13512984	3R_13512984_SNP [dm3] 3R_17687262_SNP [dm6]	T	A	3.954e^-4	0.988	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
X	16702822	X_16702822_INS [dm3] X_16808789_INS [dm6]	A	AGA	3.961e^-4	0.988	DOWNSTREAM ppk28 INTRON CR44053	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	17649831	2R_17649831_DEL [dm3] 2R_21762326_DEL [dm6]	TCA	T	3.962e^-4	0.988	DOWNSTREAM CR43983 INTERGENIC
X	4448533	X_4448533_SNP [dm3] X_4554500_SNP [dm6]	C	T	3.964e^-4	0.988	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12529499	2L_12529499_SNP [dm3] 2L_12529499_SNP [dm6]	G	A	3.984e^-4	0.988	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15202955	3R_15202955_SNP [dm3] 3R_19377233_SNP [dm6]	T	C	4.000e^-4	0.988	UPSTREAM CG31245 INTRON Ino80
2R	5709737	2R_5709737_SNP [dm3] 2R_9822232_SNP [dm6]	T	C	4.001e^-4	0.988	NON_SYNONYMOUS_CODING CG30001 DOWNSTREAM dila	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	12146903	3R_12146903_SNP [dm3] 3R_16321181_SNP [dm6]	G	A	4.002e^-4	0.988	UPSTREAM tRNA:F2:89BC & 2 others INTRON Sulf1
2R	12960971	2R_12960971_SNP [dm3] 2R_17073466_SNP [dm6]	T	C	4.002e^-4	0.988	UPSTREAM CG30460 INTRON CG30460
3R	13471956	3R_13471956_SNP [dm3] 3R_17646234_SNP [dm6]	T	A	4.007e^-4	0.988	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11668538	3L_11668538_SNP [dm3] 3L_11675438_SNP [dm6]	C	T	4.012e^-4	0.988	SYNONYMOUS_CODING CG32085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2858681	2L_2858681_SNP [dm3] 2L_2858681_SNP [dm6]	C	A	4.017e^-4	0.988	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13733134	3R_13733134_SNP [dm3] 3R_17907412_SNP [dm6]	G	A	4.019e^-4	0.988	UTR_3_PRIME CG12347 DOWNSTREAM CG12347 INTRON Rim
2R	14180962	2R_14180962_SNP [dm3] 2R_18293457_SNP [dm6]	C	T	4.020e^-4	0.988	START_GAINED CG14502 UTR_5_PRIME CG14502 UPSTREAM CG14502 INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	10388702	3R_10388702_SNP [dm3] 3R_14562980_SNP [dm6]	G	C	4.021e^-4	0.988	DOWNSTREAM CG14851 INTERGENIC
3R	23285708	3R_23285708_SNP [dm3] 3R_27459986_SNP [dm6]	A	C	4.024e^-4	0.988	INTERGENIC
2L	10431102	2L_10431102_SNP [dm3] 2L_10431102_SNP [dm6]	T	A	4.029e^-4	0.988	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4175167	3L_4175167_SNP [dm3] 3L_4175167_SNP [dm6]	C	A	4.029e^-4	0.988	UTR_3_PRIME Teh4 INTRON CG18675
X	21443845	X_21443845_SNP [dm3] X_21572818_SNP [dm6]	T	G	4.032e^-4	0.988	INTERGENIC
3L	10300505	3L_10300505_SNP [dm3] 3L_10307405_SNP [dm6]	A	C	4.042e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8366380	3R_8366380_SNP [dm3] 3R_12540658_SNP [dm6]	T	C	4.056e^-4	0.988	INTRON Octbeta3R
2L	7462764	2L_7462764_SNP [dm3] 2L_7462764_SNP [dm6]	A	G	4.065e^-4	0.988	UPSTREAM Gr28b INTERGENIC
3R	19344244	3R_19344244_SNP [dm3] 3R_23518522_SNP [dm6]	T	G	4.086e^-4	0.988	SYNONYMOUS_CODING Irk2 UPSTREAM Irk2
X	2544293	X_2544293_SNP [dm3] X_2650260_SNP [dm6]	A	C	4.087e^-4	0.988	INTRON sgg
3R	19415556	3R_19415556_SNP [dm3] 3R_23589834_SNP [dm6]	G	A	4.087e^-4	0.988	UPSTREAM CG10182 DOWNSTREAM CG33337 INTERGENIC
3R	15565768	3R_15565768_SNP [dm3] 3R_19740046_SNP [dm6]	G	C	4.088e^-4	0.988	INTRON GluClalpha
3R	22262414	3R_22262414_SNP [dm3] 3R_26436692_SNP [dm6]	A	G	4.097e^-4	0.988	INTERGENIC
3R	14877778	3R_14877778_SNP [dm3] 3R_19052056_SNP [dm6]	C	T	4.099e^-4	0.988	INTRON cdi
3R	23496799	3R_23496799_SNP [dm3] 3R_27671077_SNP [dm6]	T	C	4.101e^-4	0.988	SYNONYMOUS_CODING unc80
3R	15515037	3R_15515037_SNP [dm3] 3R_19689315_SNP [dm6]	G	A	4.101e^-4	0.988	INTRON Naam
X	20848734	X_20848734_SNP [dm3] X_20977707_SNP [dm6]	G	A	4.102e^-4	0.988	UPSTREAM CG44426 INTERGENIC
2L	18938020	2L_18938020_SNP [dm3] 2L_18938020_SNP [dm6]	C	T	4.102e^-4	0.988	INTRON ssp3
3R	8017976	3R_8017976_SNP [dm3] 3R_12192254_SNP [dm6]	A	G	4.104e^-4	0.988	DOWNSTREAM CG4810 INTERGENIC	TF binding site mE1_TFBS_cad
3R	23528553	3R_23528553_SNP [dm3] 3R_27702831_SNP [dm6]	C	A	4.114e^-4	0.988	SYNONYMOUS_CODING btz DOWNSTREAM CG12428	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20235101	3R_20235101_SNP [dm3] 3R_24409379_SNP [dm6]	G	T	4.114e^-4	0.988	INTRON nAChRalpha1
2R	5343046	2R_5343046_SNP [dm3] 2R_9455541_SNP [dm6]	T	A	4.115e^-4	0.988	UPSTREAM CG33757 INTRON Camta
3R	8808049	3R_8808049_DEL [dm3] 3R_12982327_DEL [dm6]	CGT	C	4.120e^-4	0.988	INTRON Paip2	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	5509229	3L_5509229_SNP [dm3] 3L_5516129_SNP [dm6]	T	C	4.120e^-4	0.988	INTRON Lkr	TF binding site mE1_TFBS_cad
2L	2857526	2L_2857526_SNP [dm3] 2L_2857526_SNP [dm6]	G	T	4.123e^-4	0.988	UTR_5_PRIME CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	23388003	3R_23388003_SNP [dm3] 3R_27562281_SNP [dm6]	T	A	4.134e^-4	0.988	UTR_3_PRIME wdb UPSTREAM CG5646
3R	14066720	3R_14066720_SNP [dm3] 3R_18240998_SNP [dm6]	G	A	4.135e^-4	0.988	SYNONYMOUS_CODING CG7156 UTR_3_PRIME CG7156	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2544521	X_2544521_DEL [dm3] X_2650488_DEL [dm6]	GAGATTACATTATA...	G	4.137e^-4	0.988	INTRON sgg
2L	15512524	2L_15512524_SNP [dm3] 2L_15512524_SNP [dm6]	C	T	4.140e^-4	0.988	INTERGENIC
3R	23359531	3R_23359531_SNP [dm3] 3R_27533809_SNP [dm6]	G	T	4.142e^-4	0.988	UTR_3_PRIME CG12885
X	14061719	X_14061719_DEL [dm3] X_14167686_DEL [dm6]	ATAAATTTTCGCA...	A	4.145e^-4	0.988	INTERGENIC
3R	19266466	3R_19266466_SNP [dm3] 3R_23440744_SNP [dm6]	G	A	4.146e^-4	0.988	INTRON CG4374
3R	26095714	3R_26095714_SNP [dm3] 3R_30269992_SNP [dm6]	G	C	4.148e^-4	0.988	INTERGENIC
3L	8874154	3L_8874154_SNP [dm3] 3L_8881054_SNP [dm6]	G	T	4.156e^-4	0.988	INTRON dally
2L	5563214	2L_5563214_SNP [dm3] 2L_5563214_SNP [dm6]	G	T	4.157e^-4	0.988	INTRON GluRIIB	TF binding site mE1_TFBS_cad
2R	20223516	2R_20223516_SNP [dm3] 2R_24335993_SNP [dm6]	A	T	4.163e^-4	0.988	UPSTREAM CR44282 INTERGENIC
2R	12317036	2R_12317036_SNP [dm3] 2R_16429531_SNP [dm6]	C	T	4.164e^-4	0.988	INTRON Sema-2b
3R	22261223	3R_22261223_SNP [dm3] 3R_26435501_SNP [dm6]	A	C	4.165e^-4	0.988	INTERGENIC
X	14782039	X_14782039_DEL [dm3] X_14888006_DEL [dm6]	CTACTCTTCTAATATTTGTA...	C	4.168e^-4	0.988	INTRON Flo2 & 1 other
3L	4684748	3L_4684748_SNP [dm3] 3L_4684748_SNP [dm6]	A	G	4.177e^-4	0.988	INTRON axo
3L	3715646	3L_3715646_SNP [dm3] 3L_3715646_SNP [dm6]	T	A	4.180e^-4	0.988	UTR_3_PRIME CG32264 DOWNSTREAM CG43089
X	17713340	X_17713340_SNP [dm3] X_17819307_SNP [dm6]	A	G	4.180e^-4	0.988	SYNONYMOUS_CODING CG12986	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5449908	2L_5449908_SNP [dm3] 2L_5449908_SNP [dm6]	A	G	4.192e^-4	0.988	INTERGENIC
2L	4909386	2L_4909386_SNP [dm3] 2L_4909386_SNP [dm6]	G	A	4.201e^-4	0.988	SYNONYMOUS_CODING hoe1
3R	23493818	3R_23493818_SNP [dm3] 3R_27668096_SNP [dm6]	A	C	4.204e^-4	0.988	INTRON unc80
X	3538432	X_3538432_SNP [dm3] X_3644399_SNP [dm6]	A	G	4.204e^-4	0.988	INTRON AstA-R1
3R	14755371	3R_14755371_SNP [dm3] 3R_18929649_SNP [dm6]	G	A	4.225e^-4	0.988	UPSTREAM Mpc1 INTRON CG42613	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22419882	3R_22419882_SNP [dm3] 3R_26594160_SNP [dm6]	G	A	4.234e^-4	0.988	INTRON scrib
3R	23511807	3R_23511807_SNP [dm3] 3R_27686085_SNP [dm6]	G	C	4.234e^-4	0.988	UTR_5_PRIME CG12880 UTR_3_PRIME CG31055	TF binding site mE1_TFBS_cad
X	6134765	X_6134765_SNP [dm3] X_6240732_SNP [dm6]	G	T	4.235e^-4	0.988	DOWNSTREAM Rbcn-3A & 1 other INTERGENIC
3R	22262493	3R_22262493_SNP [dm3] 3R_26436771_SNP [dm6]	G	A	4.241e^-4	0.988	INTERGENIC
2R	19150940	2R_19150940_SNP [dm3] 2R_23263417_SNP [dm6]	T	C	4.252e^-4	0.988	DOWNSTREAM CG12782 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4808415	X_4808415_SNP [dm3] X_4914382_SNP [dm6]	G	A	4.263e^-4	0.988	UTR_3_PRIME CG32772 DOWNSTREAM CG4041	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25686394	3R_25686394_SNP [dm3] 3R_29860672_SNP [dm6]	G	C	4.272e^-4	0.988	UPSTREAM CR31032 & 1 other INTRON CG15514	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	2915002	2L_2915002_SNP [dm3] 2L_2915002_SNP [dm6]	T	C	4.279e^-4	0.988	INTRON lilli
2L	17673388	2L_17673388_SNP [dm3] 2L_17673388_SNP [dm6]	T	C	4.282e^-4	0.988	INTRON CadN
3L	4732679	3L_4732679_SNP [dm3] 3L_4732679_SNP [dm6]	G	A	4.282e^-4	0.988	INTRON RhoGEF64C
3L	5508747	3L_5508747_SNP [dm3] 3L_5515647_SNP [dm6]	C	G	4.286e^-4	0.988	SYNONYMOUS_CODING Lkr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15455143	3R_15455143_SNP [dm3] 3R_19629421_SNP [dm6]	C	T	4.289e^-4	0.988	INTRON CG6231	TF binding site mE1_TFBS_kn
X	18923119	X_18923119_INS [dm3] X_19029086_INS [dm6]	A	ACAATA	4.308e^-4	0.988	DOWNSTREAM CG43759 INTERGENIC
3R	8367459	3R_8367459_SNP [dm3] 3R_12541737_SNP [dm6]	G	C	4.316e^-4	0.988	INTRON Octbeta3R
2R	20700218	2R_20700218_SNP [dm3] 2R_24812695_SNP [dm6]	G	C	4.317e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19602427	X_19602427_SNP [dm3] X_19708394_SNP [dm6]	A	G	4.319e^-4	0.988	SYNONYMOUS_CODING meso18E	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21631486	3R_21631486_SNP [dm3] 3R_25805764_SNP [dm6]	T	C	4.329e^-4	0.988	UPSTREAM BG642167 INTERGENIC
2R	766865	2R_766865_SNP [dm3] 2R_4879360_SNP [dm6]	C	A	4.330e^-4	0.988	INTERGENIC	transposable element FlyBase
3R	15257879	3R_15257879_SNP [dm3] 3R_19432157_SNP [dm6]	T	C	4.333e^-4	0.988	INTRON CG31221
2L	5451018	2L_5451018_SNP [dm3] 2L_5451018_SNP [dm6]	C	T	4.335e^-4	0.988	INTERGENIC
3L	14232768	3L_14232768_SNP [dm3] 3L_14239668_SNP [dm6]	G	T	4.340e^-4	0.988	UPSTREAM CR45399 INTERGENIC
X	4807105	X_4807105_SNP [dm3] X_4913072_SNP [dm6]	C	T	4.345e^-4	0.988	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5715614	2R_5715614_SNP [dm3] 2R_9828109_SNP [dm6]	T	A	4.346e^-4	0.988	UTR_3_PRIME hebe UPSTREAM dila
3R	22367024	3R_22367024_SNP [dm3] 3R_26541302_SNP [dm6]	A	G	4.356e^-4	0.988	INTRON scrib
3R	16716541	3R_16716541_SNP [dm3] 3R_20890819_SNP [dm6]	T	G	4.366e^-4	0.988	UPSTREAM tRNA:CR31334 & 1 other DOWNSTREAM tRNA:CR31480 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	2544302	X_2544302_SNP [dm3] X_2650269_SNP [dm6]	A	T	4.377e^-4	0.988	INTRON sgg
3L	2965390	3L_2965390_SNP [dm3] 3L_2965390_SNP [dm6]	G	A	4.386e^-4	0.988	INTERGENIC
2R	5401180	2R_5401180_SNP [dm3] 2R_9513675_SNP [dm6]	G	T	4.397e^-4	0.988	INTRON brp
2R	4037737	2R_4037737_SNP [dm3] 2R_8150232_SNP [dm6]	A	G	4.401e^-4	0.988	UPSTREAM kermit INTRON Lpin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12991542	X_12991542_SNP [dm3] X_13097509_SNP [dm6]	A	C	4.404e^-4	0.988	SYNONYMOUS_CODING CG43313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	17330930	X_17330930_SNP [dm3] X_17436897_SNP [dm6]	T	A	4.411e^-4	0.988	INTRON CG12994
2L	15818099	2L_15818099_SNP [dm3] 2L_15818099_SNP [dm6]	A	T	4.412e^-4	0.988	INTERGENIC
3R	4715925	3R_4715925_DEL [dm3] 3R_8890203_DEL [dm6]	ATA	A	4.417e^-4	0.988	INTRON pyd
3L	14606378	3L_14606378_SNP [dm3] 3L_14613278_SNP [dm6]	C	T	4.421e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6933599	2R_6933599_SNP [dm3] 2R_11046094_SNP [dm6]	T	A	4.422e^-4	0.988	INTRON luna
2L	9939455	2L_9939455_SNP [dm3] 2L_9939455_SNP [dm6]	T	C	4.423e^-4	0.988	SYNONYMOUS_CODING CG4619 UPSTREAM Apf DOWNSTREAM CR45007	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	18890575	X_18890575_SNP [dm3] X_18996542_SNP [dm6]	G	T	4.424e^-4	0.988	INTRON CG43759
3R	23285707	3R_23285707_SNP [dm3] 3R_27459985_SNP [dm6]	T	C	4.424e^-4	0.988	INTERGENIC
3R	7944280	3R_7944280_SNP [dm3] 3R_12118558_SNP [dm6]	A	G	4.438e^-4	0.988	INTERGENIC
3R	19062723	3R_19062723_SNP [dm3] 3R_23237001_SNP [dm6]	C	T	4.450e^-4	0.988	INTRON CG4467
3R	13635648	3R_13635648_SNP [dm3] 3R_17809926_SNP [dm6]	G	C	4.452e^-4	0.988	SYNONYMOUS_CODING CG18012 UTR_3_PRIME CG18012 UPSTREAM CG7357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5741756	2R_5741756_SNP [dm3] 2R_9854251_SNP [dm6]	G	T	4.466e^-4	0.988	INTRON CG1516	TF binding site mE1_TFBS_cad
X	14782021	X_14782021_SNP [dm3] X_14887988_SNP [dm6]	T	C	4.467e^-4	0.988	INTRON Flo2 & 1 other
3L	6899960	3L_6899960_SNP [dm3] 3L_6906860_SNP [dm6]	G	T	4.468e^-4	0.988	INTERGENIC	silencer mE1_HDAC_PRE
3L	13904372	3L_13904372_SNP [dm3] 3L_13911272_SNP [dm6]	G	T	4.468e^-4	0.988	INTRON Rgl
2L	17461190	2L_17461190_DEL [dm3] 2L_17461190_DEL [dm6]	CC	C	4.472e^-4	0.988	UTR_3_PRIME BicD DOWNSTREAM BicD
2R	20406918	2R_20406918_SNP [dm3] 2R_24519395_SNP [dm6]	C	A	4.474e^-4	0.988	UPSTREAM Ir60d DOWNSTREAM Ir60c INTERGENIC	TF binding site mE1_TFBS_cad
3R	15591767	3R_15591767_INS [dm3] 3R_19766045_INS [dm6]	C	CAAAAC	4.475e^-4	0.988	INTRON GluClalpha
2R	6751617	2R_6751617_DEL [dm3] 2R_10864112_DEL [dm6]	AGA	A	4.482e^-4	0.988	INTRON CG30015
2L	10885680	2L_10885680_SNP [dm3] 2L_10885680_SNP [dm6]	T	C	4.484e^-4	0.988	UPSTREAM CR44490 INTERGENIC
2L	5473547	2L_5473547_SNP [dm3] 2L_5473547_SNP [dm6]	G	A	4.488e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8578364	3R_8578364_SNP [dm3] 3R_12752642_SNP [dm6]	T	C	4.498e^-4	0.988	INTRON beat-Vc
3L	14333632	3L_14333632_SNP [dm3] 3L_14340532_SNP [dm6]	G	C	4.501e^-4	0.988	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23501391	3R_23501391_SNP [dm3] 3R_27675669_SNP [dm6]	A	T	4.502e^-4	0.988	INTRON unc80	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22367954	3R_22367954_SNP [dm3] 3R_26542232_SNP [dm6]	T	G	4.508e^-4	0.988	INTRON scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	14146360	2R_14146360_SNP [dm3] 2R_18258855_SNP [dm6]	T	A	4.509e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13128510	2L_13128510_SNP [dm3] 2L_13128510_SNP [dm6]	A	T	4.511e^-4	0.988	INTERGENIC
3R	14877832	3R_14877832_SNP [dm3] 3R_19052110_SNP [dm6]	C	A	4.513e^-4	0.988	INTRON cdi
3R	14999674	3R_14999674_SNP [dm3] 3R_19173952_SNP [dm6]	C	T	4.516e^-4	0.988	INTERGENIC
3L	7896005	3L_7896005_SNP [dm3] 3L_7902905_SNP [dm6]	T	A	4.521e^-4	0.988	INTRON pbl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22262501	3R_22262501_SNP [dm3] 3R_26436779_SNP [dm6]	C	T	4.523e^-4	0.988	INTERGENIC
2L	4157348	2L_4157348_SNP [dm3] 2L_4157348_SNP [dm6]	A	T	4.544e^-4	0.988	INTERGENIC
X	20533467	X_20533467_DEL [dm3] X_20662440_DEL [dm6]	ACA	A	4.550e^-4	0.988	INTRON CG1835
3R	16578285	3R_16578285_SNP [dm3] 3R_20752563_SNP [dm6]	T	C	4.554e^-4	0.988	INTRON CG42322	TF binding site BDTNP1_TFBS_dl
2R	18234104	2R_18234104_SNP [dm3] 2R_22346599_SNP [dm6]	C	T	4.563e^-4	0.988	INTRON Liprin-gamma
2L	10885634	2L_10885634_SNP [dm3] 2L_10885634_SNP [dm6]	G	A	4.566e^-4	0.988	UPSTREAM CR44490 INTERGENIC
3L	12098042	3L_12098042_SNP [dm3] 3L_12104942_SNP [dm6]	A	T	4.573e^-4	0.988	INTERGENIC
X	2542473	X_2542473_SNP [dm3] X_2648440_SNP [dm6]	T	C	4.578e^-4	0.988	INTRON sgg
3R	19626169	3R_19626169_SNP [dm3] 3R_23800447_SNP [dm6]	A	T	4.583e^-4	0.988	INTRON mbc
2L	2462814	2L_2462814_SNP [dm3] 2L_2462814_SNP [dm6]	A	G	4.587e^-4	0.988	DOWNSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10388742	3R_10388742_SNP [dm3] 3R_14563020_SNP [dm6]	T	A	4.597e^-4	0.988	DOWNSTREAM CG14851 INTERGENIC
3R	14553611	3R_14553611_SNP [dm3] 3R_18727889_SNP [dm6]	A	G	4.597e^-4	0.988	SYNONYMOUS_CODING CG7715 INTRON Cha	TF binding site mE1_TFBS_chinmo
2L	3005372	2L_3005372_SNP [dm3] 2L_3005372_SNP [dm6]	G	C	4.600e^-4	0.988	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3316654	2L_3316654_SNP [dm3] 2L_3316654_SNP [dm6]	C	T	4.606e^-4	0.988	DOWNSTREAM CG3326 INTRON CG3277
3R	23944283	3R_23944283_SNP [dm3] 3R_28118561_SNP [dm6]	G	A	4.608e^-4	0.988	INTERGENIC
X	12853941	X_12853941_SNP [dm3] X_12959908_SNP [dm6]	C	G	4.608e^-4	0.988	NON_SYNONYMOUS_CODING CG32642
3L	6651214	3L_6651214_SNP [dm3] 3L_6658114_SNP [dm6]	G	A	4.611e^-4	0.988	INTERGENIC
2L	12988357	2L_12988357_SNP [dm3] 2L_12988357_SNP [dm6]	A	G	4.612e^-4	0.988	INTERGENIC
2L	5449862	2L_5449862_SNP [dm3] 2L_5449862_SNP [dm6]	T	C	4.613e^-4	0.988	INTERGENIC
X	7930627	X_7930627_SNP [dm3] X_8036594_SNP [dm6]	A	G	4.625e^-4	0.988	SYNONYMOUS_CODING CG2233
3R	22407627	3R_22407627_SNP [dm3] 3R_26581905_SNP [dm6]	T	A	4.630e^-4	0.988	DOWNSTREAM scrib INTRON scrib
3R	23492220	3R_23492220_SNP [dm3] 3R_27666498_SNP [dm6]	A	T	4.641e^-4	0.988	SYNONYMOUS_CODING unc80
3R	10364815	3R_10364815_SNP [dm3] 3R_14539093_SNP [dm6]	T	C	4.641e^-4	0.988	INTRON Pde6
3L	13457728	3L_13457728_SNP [dm3] 3L_13464628_SNP [dm6]	G	T	4.644e^-4	0.988	SYNONYMOUS_CODING CG10738 DOWNSTREAM CG10089	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18201548	3R_18201548_SNP [dm3] 3R_22375826_SNP [dm6]	A	T	4.646e^-4	0.988	UPSTREAM CG18596 DOWNSTREAM CG7069 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx
3R	8002084	3R_8002084_SNP [dm3] 3R_12176362_SNP [dm6]	G	A	4.646e^-4	0.988	INTERGENIC
X	8807383	X_8807383_SNP [dm3] X_8913350_SNP [dm6]	T	A	4.656e^-4	0.988	INTRON rdgA
3R	22261241	3R_22261241_SNP [dm3] 3R_26435519_SNP [dm6]	C	A	4.657e^-4	0.988	INTERGENIC
2L	7055557	2L_7055557_SNP [dm3] 2L_7055557_SNP [dm6]	G	T	4.659e^-4	0.988	UTR_3_PRIME milt UPSTREAM Mnn1 DOWNSTREAM milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3435319	2L_3435319_SNP [dm3] 2L_3435319_SNP [dm6]	G	A	4.670e^-4	0.988	INTERGENIC
X	17152254	X_17152254_SNP [dm3] X_17258221_SNP [dm6]	G	C	4.679e^-4	0.988	INTRON f
3L	12242863	3L_12242863_SNP [dm3] 3L_12249763_SNP [dm6]	A	G	4.682e^-4	0.988	INTRON app	TF binding site mE1_TFBS_cad
3L	10594286	3L_10594286_SNP [dm3] 3L_10601186_SNP [dm6]	C	G	4.694e^-4	0.988	INTERGENIC
X	2326545	X_2326545_SNP [dm3] X_2432512_SNP [dm6]	G	T	4.698e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12337229	3L_12337229_SNP [dm3] 3L_12344129_SNP [dm6]	T	G	4.699e^-4	0.988	INTRON CrzR
X	16559395	X_16559395_SNP [dm3] X_16665362_SNP [dm6]	C	T	4.700e^-4	0.988	UPSTREAM CG15865 INTRON r
3R	20210011	3R_20210011_SNP [dm3] 3R_24384289_SNP [dm6]	T	A	4.701e^-4	0.988	INTRON CG17780
3L	18453315	3L_18453315_SNP [dm3] 3L_18460215_SNP [dm6]	C	T	4.715e^-4	0.988	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	19173910	3L_19173910_SNP [dm3] 3L_19180810_SNP [dm6]	T	C	4.724e^-4	0.988	INTRON fz2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
3R	9925511	3R_9925511_SNP [dm3] 3R_14099789_SNP [dm6]	C	G	4.727e^-4	0.988	DOWNSTREAM PK1-R INTERGENIC
2L	15139041	2L_15139041_DEL [dm3] 2L_15139041_DEL [dm6]	AAGTAGAATAAAGTGTC...	A	4.728e^-4	0.988	INTERGENIC
3L	11098177	3L_11098177_SNP [dm3] 3L_11105077_SNP [dm6]	A	T	4.731e^-4	0.988	INTERGENIC
X	10782569	X_10782569_SNP [dm3] X_10888536_SNP [dm6]	C	G	4.738e^-4	0.988	INTRON Ork1
X	4761490	X_4761490_DEL [dm3] X_4867457_DEL [dm6]	TC	T	4.743e^-4	0.988	INTRON CG42594
2R	17768719	2R_17768719_SNP [dm3] 2R_21881214_SNP [dm6]	A	G	4.747e^-4	0.988	DOWNSTREAM PpN58A INTRON Fili
2R	17895249	2R_17895249_SNP [dm3] 2R_22007744_SNP [dm6]	G	A	4.752e^-4	0.988	INTRON CG34370
3R	23505396	3R_23505396_SNP [dm3] 3R_27679674_SNP [dm6]	G	A	4.753e^-4	0.988	SYNONYMOUS_CODING CG12883 DOWNSTREAM CG5590 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	10527656	2R_10527656_SNP [dm3] 2R_14640151_SNP [dm6]	T	C	4.754e^-4	0.988	DOWNSTREAM CG12862 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23436291	3R_23436291_SNP [dm3] 3R_27610569_SNP [dm6]	G	A	4.757e^-4	0.988	INTRON Tusp
3L	19512034	3L_19512034_SNP [dm3] 3L_19518934_SNP [dm6]	G	T	4.758e^-4	0.988	UPSTREAM Cpr76Ba & 1 other INTERGENIC
2R	14181651	2R_14181651_SNP [dm3] 2R_18294146_SNP [dm6]	A	G	4.762e^-4	0.988	SYNONYMOUS_CODING CG14502 UPSTREAM CG18536 INTRON sbb	TF binding site mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
X	2540533	X_2540533_SNP [dm3] X_2646500_SNP [dm6]	A	G	4.762e^-4	0.988	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15004148	3R_15004148_SNP [dm3] 3R_19178426_SNP [dm6]	G	A	4.766e^-4	0.988	SYNONYMOUS_CODING CG5555 DOWNSTREAM CG14282
3L	14330714	3L_14330714_SNP [dm3] 3L_14337614_SNP [dm6]	T	A	4.768e^-4	0.988	INTRON fz
3R	20597939	3R_20597939_SNP [dm3] 3R_24772217_SNP [dm6]	C	T	4.773e^-4	0.988	UTR_5_PRIME CG42331
3R	13509221	3R_13509221_SNP [dm3] 3R_17683499_SNP [dm6]	G	A	4.773e^-4	0.988	NON_SYNONYMOUS_CODING CG7655 UPSTREAM alt DOWNSTREAM CG31251	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13511637	3R_13511637_SNP [dm3] 3R_17685915_SNP [dm6]	G	A	4.773e^-4	0.988	UTR_3_PRIME CG31249 UPSTREAM CG31251 DOWNSTREAM CG31360
3R	23849907	3R_23849907_SNP [dm3] 3R_28024185_SNP [dm6]	A	G	4.776e^-4	0.988	INTERGENIC
2L	278178	2L_278178_SNP [dm3] 2L_278178_SNP [dm6]	C	G	4.792e^-4	0.988	NON_SYNONYMOUS_CODING smo UTR_5_PRIME CG17078 UPSTREAM CG17078	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6280502	2R_6280502_SNP [dm3] 2R_10392997_SNP [dm6]	C	T	4.793e^-4	0.988	INTRON CG42732
3L	4307317	3L_4307317_SNP [dm3] 3L_4307317_SNP [dm6]	C	T	4.798e^-4	0.988	INTRON dyl
3L	10459188	3L_10459188_SNP [dm3] 3L_10466088_SNP [dm6]	T	C	4.802e^-4	0.988	UPSTREAM S-Lap3 INTRON S-Lap3
3L	10459205	3L_10459205_MNP [dm3] 3L_10466105_MNP [dm6]	GTT	AGC	4.806e^-4	0.988	UPSTREAM S-Lap3 INTRON S-Lap3
3R	4712396	3R_4712396_SNP [dm3] 3R_8886674_SNP [dm6]	G	A	4.813e^-4	0.988	INTRON pyd
3R	8817042	3R_8817042_SNP [dm3] 3R_12991320_SNP [dm6]	A	G	4.817e^-4	0.988	UTR_3_PRIME CG31342 DOWNSTREAM yellow-f
3R	13667445	3R_13667445_SNP [dm3] 3R_17841723_SNP [dm6]	A	G	4.818e^-4	0.988	INTRON tinc
X	4763036	X_4763036_SNP [dm3] X_4869003_SNP [dm6]	T	G	4.824e^-4	0.988	INTRON CG42594
2L	3408880	2L_3408880_SNP [dm3] 2L_3408880_SNP [dm6]	G	A	4.848e^-4	0.988	INTRON pgant2
2L	8224245	2L_8224245_SNP [dm3] 2L_8224245_SNP [dm6]	A	C	4.850e^-4	0.988	SYNONYMOUS_CODING Pvr
2R	4962098	2R_4962098_SNP [dm3] 2R_9074593_SNP [dm6]	G	A	4.853e^-4	0.988	INTRON ana
2L	3210674	2L_3210674_SNP [dm3] 2L_3210674_SNP [dm6]	C	T	4.860e^-4	0.988	EXON CR45336
2L	15139061	2L_15139061_SNP [dm3] 2L_15139061_SNP [dm6]	T	A	4.861e^-4	0.988	INTERGENIC
2R	5829107	2R_5829107_SNP [dm3] 2R_9941602_SNP [dm6]	T	A	4.862e^-4	0.988	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3R	23505444	3R_23505444_SNP [dm3] 3R_27679722_SNP [dm6]	T	G	4.865e^-4	0.988	SYNONYMOUS_CODING CG12883 DOWNSTREAM CG5590 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5449849	2L_5449849_SNP [dm3] 2L_5449849_SNP [dm6]	C	A	4.870e^-4	0.988	INTERGENIC
3R	23507849	3R_23507849_SNP [dm3] 3R_27682127_SNP [dm6]	A	T	4.878e^-4	0.988	UPSTREAM Sce INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	19532916	3L_19532916_SNP [dm3] 3L_19539816_SNP [dm6]	C	T	4.880e^-4	0.988	SYNONYMOUS_CODING CG9279	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13793346	3R_13793346_SNP [dm3] 3R_17967624_SNP [dm6]	C	G	4.882e^-4	0.988	SYNONYMOUS_CODING cpo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17844426	3R_17844426_DEL [dm3] 3R_22018704_DEL [dm6]	CGCC	C	4.882e^-4	0.988	CODON_DELETION CG6439 DOWNSTREAM CG6455	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2462798	2L_2462798_SNP [dm3] 2L_2462798_SNP [dm6]	C	T	4.883e^-4	0.988	DOWNSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2462800	2L_2462800_SNP [dm3] 2L_2462800_SNP [dm6]	T	C	4.883e^-4	0.988	DOWNSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16241698	2L_16241698_DEL [dm3] 2L_16241698_DEL [dm6]	AAAAAGTTTTCGA...	A	4.895e^-4	0.988	UPSTREAM CG42818 DOWNSTREAM CG42817 INTERGENIC
2L	5563211	2L_5563211_SNP [dm3] 2L_5563211_SNP [dm6]	C	T	4.900e^-4	0.988	INTRON GluRIIB	TF binding site mE1_TFBS_cad
2L	7078905	2L_7078905_SNP [dm3] 2L_7078905_SNP [dm6]	G	T	4.901e^-4	0.988	INTRON Pvf2 EXON CR44611
2L	18589532	2L_18589532_SNP [dm3] 2L_18589532_SNP [dm6]	G	T	4.912e^-4	0.988	INTRON Pde11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15833423	3R_15833423_SNP [dm3] 3R_20007701_SNP [dm6]	A	G	4.916e^-4	0.988	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	1037127	2L_1037127_SNP [dm3] 2L_1037127_SNP [dm6]	A	T	4.919e^-4	0.988	UPSTREAM CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6794401	2R_6794401_SNP [dm3] 2R_10906896_SNP [dm6]	C	T	4.920e^-4	0.988	INTERGENIC
2R	6795892	2R_6795892_SNP [dm3] 2R_10908387_SNP [dm6]	T	C	4.920e^-4	0.988	INTERGENIC
3R	15514999	3R_15514999_SNP [dm3] 3R_19689277_SNP [dm6]	G	T	4.924e^-4	0.988	INTRON Naam
2L	12843840	2L_12843840_SNP [dm3] 2L_12843840_SNP [dm6]	C	G	4.928e^-4	0.988	INTERGENIC
3L	11668654	3L_11668654_SNP [dm3] 3L_11675554_SNP [dm6]	C	T	4.930e^-4	0.988	UTR_5_PRIME CG32085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17851913	3R_17851913_SNP [dm3] 3R_22026191_SNP [dm6]	G	A	4.935e^-4	0.988	SYNONYMOUS_CODING Cchl UPSTREAM CG6028	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15953488	3L_15953488_SNP [dm3] 3L_15960388_SNP [dm6]	G	A	4.942e^-4	0.988	SYNONYMOUS_CODING CG17032 DOWNSTREAM l_3_72Ab
3R	15787812	3R_15787812_SNP [dm3] 3R_19962090_SNP [dm6]	A	T	4.955e^-4	0.988	INTRON Hs6st
2L	11326583	2L_11326583_SNP [dm3] 2L_11326583_SNP [dm6]	A	G	4.967e^-4	0.988	INTERGENIC
3R	15696751	3R_15696751_SNP [dm3] 3R_19871029_SNP [dm6]	G	T	4.971e^-4	0.988	INTRON CG4562	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	18196253	3R_18196253_INS [dm3] 3R_22370531_INS [dm6]	T	TT	4.976e^-4	0.988	INTRON PyK	TF binding site mE1_TFBS_chinmo
X	4448426	X_4448426_SNP [dm3] X_4554393_SNP [dm6]	C	A	4.979e^-4	0.988	UTR_5_PRIME CG11444 UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20897275	2L_20897275_SNP [dm3] 2L_20897275_SNP [dm6]	G	A	4.987e^-4	0.988	INTRON sky & 1 other
2L	7340300	2L_7340300_SNP [dm3] 2L_7340300_SNP [dm6]	G	A	4.988e^-4	0.988	INTRON Wnt6	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	5449864	2L_5449864_SNP [dm3] 2L_5449864_SNP [dm6]	T	C	4.990e^-4	0.988	INTERGENIC
2R	10528294	2R_10528294_SNP [dm3] 2R_14640789_SNP [dm6]	C	G	5.000e^-4	0.988	UPSTREAM CG12862 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19062789	3R_19062789_DEL [dm3] 3R_23237067_DEL [dm6]	ACG	A	5.005e^-4	0.988	INTRON CG4467
3R	24757140	3R_24757140_SNP [dm3] 3R_28931418_SNP [dm6]	T	C	5.009e^-4	0.988	INTRON CG14521
3R	19910007	3R_19910007_SNP [dm3] 3R_24084285_SNP [dm6]	A	G	5.009e^-4	0.988	INTRON 4EHP
3R	13509535	3R_13509535_SNP [dm3] 3R_17683813_SNP [dm6]	C	T	5.010e^-4	0.988	NON_SYNONYMOUS_CODING CG31251 DOWNSTREAM CG7655	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19368190	3R_19368190_SNP [dm3] 3R_23542468_SNP [dm6]	C	T	5.012e^-4	0.988	INTERGENIC
3L	3298006	3L_3298006_SNP [dm3] 3L_3298006_SNP [dm6]	A	C	5.015e^-4	0.988	SYNONYMOUS_CODING CG12009
3R	8018960	3R_8018960_SNP [dm3] 3R_12193238_SNP [dm6]	A	G	5.019e^-4	0.988	SYNONYMOUS_CODING CG4810	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5889659	2L_5889659_SNP [dm3] 2L_5889659_SNP [dm6]	T	C	5.020e^-4	0.988	INTERGENIC
2L	3457086	2L_3457086_SNP [dm3] 2L_3457086_SNP [dm6]	G	T	5.020e^-4	0.988	UPSTREAM Sec5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	10554829	2R_10554829_SNP [dm3] 2R_14667324_SNP [dm6]	T	G	5.025e^-4	0.988	UPSTREAM CG12860 INTERGENIC
3R	17847181	3R_17847181_SNP [dm3] 3R_22021459_SNP [dm6]	T	C	5.032e^-4	0.988	SYNONYMOUS_CODING CG6455
3R	15446057	3R_15446057_SNP [dm3] 3R_19620335_SNP [dm6]	G	A	5.036e^-4	0.988	INTRON CG6231
3R	10138855	3R_10138855_INS [dm3] 3R_14313133_INS [dm6]	G	GT	5.038e^-4	0.988	INTRON CG31321
3R	22384088	3R_22384088_SNP [dm3] 3R_26558366_SNP [dm6]	C	G	5.051e^-4	0.988	INTRON scrib
3L	4493380	3L_4493380_INS [dm3] 3L_4493380_INS [dm6]	A	AG	5.054e^-4	0.988	DOWNSTREAM CR44709 INTERGENIC
3L	19535460	3L_19535460_SNP [dm3] 3L_19542360_SNP [dm6]	A	C	5.061e^-4	0.988	NON_SYNONYMOUS_CODING CG9279 UPSTREAM CG43885	TF binding site mE1_TFBS_cad
X	4809273	X_4809273_SNP [dm3] X_4915240_SNP [dm6]	A	G	5.067e^-4	0.988	DOWNSTREAM CG4041 & 1 other INTERGENIC
2R	3812910	2R_3812910_SNP [dm3] 2R_7925405_SNP [dm6]	A	T	5.086e^-4	0.988	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	14551724	2L_14551724_SNP [dm3] 2L_14551724_SNP [dm6]	A	G	5.086e^-4	0.988	UPSTREAM CR44853 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13501833	3R_13501833_SNP [dm3] 3R_17676111_SNP [dm6]	G	C	5.087e^-4	0.988	SYNONYMOUS_CODING alt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13503328	3R_13503328_SNP [dm3] 3R_17677606_SNP [dm6]	G	T	5.087e^-4	0.988	NON_SYNONYMOUS_CODING alt	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	2846353	2L_2846353_SNP [dm3] 2L_2846353_SNP [dm6]	T	C	5.088e^-4	0.988	NON_SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
3R	13504021	3R_13504021_SNP [dm3] 3R_17678299_SNP [dm6]	G	T	5.088e^-4	0.988	INTRON alt	TF binding site mE1_TFBS_inv
2L	20097482	2L_20097482_SNP [dm3] 2L_20097482_SNP [dm6]	T	A	5.094e^-4	0.988	UPSTREAM Kua & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
2R	3769714	2R_3769714_SNP [dm3] 2R_7882209_SNP [dm6]	A	G	5.094e^-4	0.988	INTRON Dgk
3R	23208821	3R_23208821_SNP [dm3] 3R_27383099_SNP [dm6]	G	A	5.103e^-4	0.989	INTRON side
2R	20632808	2R_20632808_SNP [dm3] 2R_24745285_SNP [dm6]	A	C	5.113e^-4	0.989	INTRON CG30421	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	8672499	2R_8672499_SNP [dm3] 2R_12784994_SNP [dm6]	T	C	5.122e^-4	0.989	INTRON sca EXON CR45137	regulatory region REDfly_CRMs
3R	16990705	3R_16990705_SNP [dm3] 3R_21164983_SNP [dm6]	G	A	5.126e^-4	0.989	SYNONYMOUS_CODING CG5810 DOWNSTREAM Snmp1 INTRON SNF4Agamma
3R	15374650	3R_15374650_SNP [dm3] 3R_19548928_SNP [dm6]	C	T	5.128e^-4	0.989	INTRON Dys
2L	4316029	2L_4316029_SNP [dm3] 2L_4316029_SNP [dm6]	C	T	5.140e^-4	0.989	UTR_3_PRIME tutl INTRON tutl
2R	6795162	2R_6795162_SNP [dm3] 2R_10907657_SNP [dm6]	C	T	5.144e^-4	0.989	INTERGENIC
3L	2280574	3L_2280574_SNP [dm3] 3L_2280574_SNP [dm6]	A	C	5.145e^-4	0.989	INTERGENIC
3R	15899789	3R_15899789_SNP [dm3] 3R_20074067_SNP [dm6]	T	A	5.157e^-4	0.989	INTERGENIC
X	2569094	X_2569094_SNP [dm3] X_2675061_SNP [dm6]	C	T	5.160e^-4	0.989	UTR_3_PRIME sgg UPSTREAM CR45197 DOWNSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9089537	3L_9089537_SNP [dm3] 3L_9096437_SNP [dm6]	T	C	5.165e^-4	0.989	UPSTREAM CG13315 INTERGENIC
2R	7795266	2R_7795266_SNP [dm3] 2R_11907761_SNP [dm6]	C	T	5.172e^-4	0.989	INTRON CG13183
3L	4090371	3L_4090371_SNP [dm3] 3L_4090371_SNP [dm6]	G	A	5.201e^-4	0.989	NON_SYNONYMOUS_CODING CG14989	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6796501	2R_6796501_SNP [dm3] 2R_10908996_SNP [dm6]	A	G	5.206e^-4	0.989	UPSTREAM Obp47a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13444501	3R_13444501_SNP [dm3] 3R_17618779_SNP [dm6]	C	G	5.210e^-4	0.989	UTR_5_PRIME CG14324 UPSTREAM CG14326 & 2 others DOWNSTREAM tRNA:V3b:90BC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8815110	3R_8815110_SNP [dm3] 3R_12989388_SNP [dm6]	G	A	5.215e^-4	0.989	NON_SYNONYMOUS_CODING CG31342 UPSTREAM CG14383	TF binding site mE1_TFBS_cad
2L	6025492	2L_6025492_SNP [dm3] 2L_6025492_SNP [dm6]	G	C	5.217e^-4	0.989	UPSTREAM CG9107 DOWNSTREAM CG9109 INTERGENIC	TF binding site mE1_TFBS_inv
2L	16183848	2L_16183848_SNP [dm3] 2L_16183848_SNP [dm6]	A	T	5.219e^-4	0.989	INTRON Ca-alpha1D
X	20540078	X_20540078_SNP [dm3] X_20669051_SNP [dm6]	G	T	5.227e^-4	0.989	INTRON CG1835
2R	7752970	2R_7752970_SNP [dm3] 2R_11865465_SNP [dm6]	C	A	5.228e^-4	0.989	DOWNSTREAM CG42531 INTRON Damm
2R	15078644	2R_15078644_SNP [dm3] 2R_19191139_SNP [dm6]	T	C	5.228e^-4	0.989	INTRON hppy
3R	15681278	3R_15681278_SNP [dm3] 3R_19855556_SNP [dm6]	T	A	5.237e^-4	0.989	INTRON Ire1	TF binding site mE1_TFBS_cad
3L	14511587	3L_14511587_SNP [dm3] 3L_14518487_SNP [dm6]	G	A	5.242e^-4	0.989	DOWNSTREAM CG9592 INTRON bbg
3R	17821109	3R_17821109_SNP [dm3] 3R_21995387_SNP [dm6]	G	A	5.243e^-4	0.989	INTRON Eip93F
3R	10838744	3R_10838744_SNP [dm3] 3R_15013022_SNP [dm6]	C	G	5.244e^-4	0.989	INTERGENIC
2R	20385295	2R_20385295_SNP [dm3] 2R_24497772_SNP [dm6]	T	C	5.264e^-4	0.989	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20385311	2R_20385311_SNP [dm3] 2R_24497788_SNP [dm6]	C	T	5.264e^-4	0.989	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15139064	2L_15139064_DEL [dm3] 2L_15139064_DEL [dm6]	TTACGAAAA	C	5.273e^-4	0.989	INTERGENIC
3R	14877891	3R_14877891_SNP [dm3] 3R_19052169_SNP [dm6]	G	A	5.280e^-4	0.989	INTRON cdi
3L	9655392	3L_9655392_SNP [dm3] 3L_9662292_SNP [dm6]	G	A	5.281e^-4	0.989	INTRON fry	TF binding site BDTNP1_TFBS_twi
2R	18533119	2R_18533119_SNP [dm3] 2R_22645614_SNP [dm6]	A	C	5.287e^-4	0.989	INTRON CG2852	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6395960	2L_6395960_SNP [dm3] 2L_6395960_SNP [dm6]	G	A	5.291e^-4	0.989	SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad
3R	2577303	3R_2577303_SNP [dm3] 3R_6751581_SNP [dm6]	T	C	5.293e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

Cuticul_7_C24_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results