DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.550e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2151 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	3.838e^-7	0.171	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
3L	9583287	3L_9583287_SNP [dm3] 3L_9590187_SNP [dm6]	A	G	6.405e^-7	0.171	INTRON CG42673
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	7.141e^-7	0.171	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	7.542e^-7	0.171	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	7.654e^-7	0.171	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	1.140e^-6	0.171	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	1.188e^-6	0.171	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	1.188e^-6	0.171	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	1.216e^-6	0.171	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	3589047	2L_3589047_SNP [dm3] 2L_3589047_SNP [dm6]	A	T	1.311e^-6	0.171	EXON CR43823	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	26103195	3R_26103195_SNP [dm3] 3R_30277473_SNP [dm6]	C	T	1.390e^-6	0.171	UPSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	1.393e^-6	0.171	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
3L	3384861	3L_3384861_DEL [dm3] 3L_3384861_DEL [dm6]	ATTTTTG	A	1.480e^-6	0.171	INTERGENIC
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	1.514e^-6	0.171	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3384878	3L_3384878_DEL [dm3] 3L_3384878_DEL [dm6]	GATGGTACCCCTTA...	G	1.577e^-6	0.171	INTERGENIC
3L	3384873	3L_3384873_SNP [dm3] 3L_3384873_SNP [dm6]	A	G	1.634e^-6	0.171	INTERGENIC
3L	3384870	3L_3384870_SNP [dm3] 3L_3384870_SNP [dm6]	G	A	1.781e^-6	0.171	INTERGENIC
3L	8633004	3L_8633004_SNP [dm3] 3L_8639904_SNP [dm6]	G	A	1.782e^-6	0.171	UPSTREAM Cpr66D INTERGENIC
3L	3384895	3L_3384895_SNP [dm3] 3L_3384895_SNP [dm6]	C	A	1.804e^-6	0.171	INTERGENIC
2L	16646042	2L_16646042_SNP [dm3] 2L_16646042_SNP [dm6]	A	T	1.820e^-6	0.171	INTRON CG42389
3R	22433750	3R_22433750_SNP [dm3] 3R_26608028_SNP [dm6]	T	C	2.130e^-6	0.186	EXON CR44951
3R	10349281	3R_10349281_SNP [dm3] 3R_14523559_SNP [dm6]	T	C	2.181e^-6	0.186	SYNONYMOUS_CODING Pde6 DOWNSTREAM Cyp313a1
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	2.279e^-6	0.186	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	2.431e^-6	0.19	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8633024	3L_8633024_SNP [dm3] 3L_8639924_SNP [dm6]	A	G	2.583e^-6	0.191	UPSTREAM Cpr66D INTERGENIC
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	2.650e^-6	0.191	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529262	2L_8529262_SNP [dm3] 2L_8529262_SNP [dm6]	T	C	2.886e^-6	0.2	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
3R	20865586	3R_20865586_INS [dm3] 3R_25039864_INS [dm6]	A	ATA	3.222e^-6	0.202	UPSTREAM CG6422 DOWNSTREAM 5PtaseI INTRON bai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	3.223e^-6	0.202	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	3.571e^-6	0.202	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8529353	2L_8529353_DEL [dm3] 2L_8529353_DEL [dm6]	ATAAAAA	A	3.574e^-6	0.202	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_prd
3L	3384899	3L_3384899_SNP [dm3] 3L_3384899_SNP [dm6]	T	A	4.271e^-6	0.202	INTERGENIC
3L	3384900	3L_3384900_SNP [dm3] 3L_3384900_SNP [dm6]	A	G	4.271e^-6	0.202	INTERGENIC
3L	3384978	3L_3384978_SNP [dm3] 3L_3384978_SNP [dm6]	A	T	4.297e^-6	0.202	INTERGENIC
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	4.348e^-6	0.202	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	3384840	3L_3384840_SNP [dm3] 3L_3384840_SNP [dm6]	T	G	4.380e^-6	0.202	INTERGENIC
2L	7775153	2L_7775153_DEL [dm3] 2L_7775153_DEL [dm6]	AAA	A	4.393e^-6	0.202	DOWNSTREAM CG7179 & 1 other INTERGENIC
3L	3384965	3L_3384965_SNP [dm3] 3L_3384965_SNP [dm6]	G	A	4.445e^-6	0.202	INTERGENIC
3L	3384999	3L_3384999_SNP [dm3] 3L_3384999_SNP [dm6]	C	T	4.480e^-6	0.202	INTERGENIC
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	4.546e^-6	0.202	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3384985	3L_3384985_SNP [dm3] 3L_3384985_SNP [dm6]	G	C	4.605e^-6	0.202	INTERGENIC
X	4747832	X_4747832_SNP [dm3] X_4853799_SNP [dm6]	C	T	4.630e^-6	0.202	INTRON CG42594
3L	3384839	3L_3384839_SNP [dm3] 3L_3384839_SNP [dm6]	C	A	4.684e^-6	0.202	INTERGENIC
3L	3384994	3L_3384994_SNP [dm3] 3L_3384994_SNP [dm6]	T	G	4.745e^-6	0.202	INTERGENIC
3L	3384963	3L_3384963_SNP [dm3] 3L_3384963_SNP [dm6]	G	T	4.916e^-6	0.205	INTERGENIC
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	5.118e^-6	0.208	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5792276	2L_5792276_SNP [dm3] 2L_5792276_SNP [dm6]	G	A	5.261e^-6	0.208	INTRON CG9171
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	5.393e^-6	0.208	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8633026	3L_8633026_SNP [dm3] 3L_8639926_SNP [dm6]	G	A	5.430e^-6	0.208	UPSTREAM Cpr66D INTERGENIC
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	5.541e^-6	0.208	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	5.884e^-6	0.216	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3384976	3L_3384976_INS [dm3] 3L_3384976_INS [dm6]	A	AC	7.034e^-6	0.254	INTERGENIC
3R	20865557	3R_20865557_SNP [dm3] 3R_25039835_SNP [dm6]	T	C	7.434e^-6	0.263	UPSTREAM CG6422 DOWNSTREAM 5PtaseI INTRON bai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	3383083	3L_3383083_SNP [dm3] 3L_3383083_SNP [dm6]	G	A	8.400e^-6	0.281	INTERGENIC
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	8.509e^-6	0.281	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	8.639e^-6	0.281	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8510361	2L_8510361_SNP [dm3] 2L_8510361_SNP [dm6]	C	A	8.656e^-6	0.281	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4443358	X_4443358_SNP [dm3] X_4549325_SNP [dm6]	T	C	8.700e^-6	0.281	SYNONYMOUS_CODING CG15912 UPSTREAM Usf DOWNSTREAM CG11436 INTRON CR32773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	3384612	3L_3384612_SNP [dm3] 3L_3384612_SNP [dm6]	C	A	9.780e^-6	0.307	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8529328	2L_8529328_SNP [dm3] 2L_8529328_SNP [dm6]	G	A	9.885e^-6	0.307	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	1.055e^-5	0.307	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	1.062e^-5	0.307	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3L	3382670	3L_3382670_SNP [dm3] 3L_3382670_SNP [dm6]	G	C	1.080e^-5	0.307	INTERGENIC
2L	8529270	2L_8529270_SNP [dm3] 2L_8529270_SNP [dm6]	C	A	1.089e^-5	0.307	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8529430	2L_8529430_SNP [dm3] 2L_8529430_SNP [dm6]	T	A	1.125e^-5	0.307	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3L	3384633	3L_3384633_SNP [dm3] 3L_3384633_SNP [dm6]	C	T	1.128e^-5	0.307	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	20810978	3R_20810978_SNP [dm3] 3R_24985256_SNP [dm6]	G	A	1.130e^-5	0.307	UPSTREAM tnc INTRON tnc
2L	4420360	2L_4420360_SNP [dm3] 2L_4420360_SNP [dm6]	T	A	1.139e^-5	0.307	INTRON CG15431
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	1.142e^-5	0.307	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	1.162e^-5	0.307	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	15805007	2L_15805007_SNP [dm3] 2L_15805007_SNP [dm6]	C	A	1.174e^-5	0.307	INTERGENIC
2L	18585505	2L_18585505_SNP [dm3] 2L_18585505_SNP [dm6]	T	A	1.192e^-5	0.307	INTRON Pde11
3L	3382665	3L_3382665_SNP [dm3] 3L_3382665_SNP [dm6]	A	G	1.193e^-5	0.307	INTERGENIC
3L	3384722	3L_3384722_SNP [dm3] 3L_3384722_SNP [dm6]	G	T	1.225e^-5	0.307	INTERGENIC
2R	12703280	2R_12703280_SNP [dm3] 2R_16815775_SNP [dm6]	A	C	1.238e^-5	0.307	UPSTREAM CR44380 & 1 other INTERGENIC
3R	7865757	3R_7865757_SNP [dm3] 3R_12040035_SNP [dm6]	G	T	1.256e^-5	0.307	UPSTREAM CG14736 INTERGENIC
X	18445697	X_18445697_SNP [dm3] X_18551664_SNP [dm6]	G	A	1.260e^-5	0.307	INTRON Bx
3R	10811812	3R_10811812_SNP [dm3] 3R_14986090_SNP [dm6]	C	A	1.288e^-5	0.309	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11576925	2L_11576925_INS [dm3] 2L_11576925_INS [dm6]	G	GAG	1.303e^-5	0.309	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	1.338e^-5	0.314	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20865590	3R_20865590_SNP [dm3] 3R_25039868_SNP [dm6]	G	C	1.448e^-5	0.332	UPSTREAM CG6422 DOWNSTREAM 5PtaseI INTRON bai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	9884642	X_9884642_SNP [dm3] X_9990609_SNP [dm6]	A	G	1.487e^-5	0.332	INTRON CG32694
3R	11086034	3R_11086034_SNP [dm3] 3R_15260312_SNP [dm6]	A	G	1.496e^-5	0.332	SYNONYMOUS_CODING Su_var_3-9 INTRON eIF-2gamma
X	11412964	X_11412964_DEL [dm3] X_11518931_DEL [dm6]	CAA	C	1.506e^-5	0.332	INTRON Drak
2L	8371525	2L_8371525_INS [dm3] 2L_8371525_INS [dm6]	A	ATGGGCCTCAAAAA...	1.585e^-5	0.332	UPSTREAM CR45341 & 1 other INTRON CG17292
3L	3384714	3L_3384714_SNP [dm3] 3L_3384714_SNP [dm6]	G	A	1.593e^-5	0.332	INTERGENIC
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	1.644e^-5	0.332	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8529408	2L_8529408_SNP [dm3] 2L_8529408_SNP [dm6]	G	A	1.646e^-5	0.332	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	1.659e^-5	0.332	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3383210	3L_3383210_SNP [dm3] 3L_3383210_SNP [dm6]	T	G	1.660e^-5	0.332	INTERGENIC
3L	3384043	3L_3384043_SNP [dm3] 3L_3384043_SNP [dm6]	C	T	1.662e^-5	0.332	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	5232407	2R_5232407_SNP [dm3] 2R_9344902_SNP [dm6]	T	A	1.688e^-5	0.332	UPSTREAM Or45a INTRON CG13954 & 1 other
3L	9579123	3L_9579123_SNP [dm3] 3L_9586023_SNP [dm6]	G	A	1.696e^-5	0.332	INTRON CG42673
3L	9579125	3L_9579125_SNP [dm3] 3L_9586025_SNP [dm6]	G	A	1.696e^-5	0.332	INTRON CG42673
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	1.707e^-5	0.332	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23285239	3R_23285239_SNP [dm3] 3R_27459517_SNP [dm6]	C	T	1.723e^-5	0.332	INTERGENIC
3R	26488840	3R_26488840_SNP [dm3] 3R_30663118_SNP [dm6]	G	A	1.726e^-5	0.332	INTERGENIC
2R	4530115	2R_4530115_SNP [dm3] 2R_8642610_SNP [dm6]	C	A	1.733e^-5	0.332	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14861836	2L_14861836_SNP [dm3] 2L_14861836_SNP [dm6]	G	A	1.801e^-5	0.334	INTERGENIC
2L	16646040	2L_16646040_SNP [dm3] 2L_16646040_SNP [dm6]	G	T	1.815e^-5	0.334	INTRON CG42389
2L	16646061	2L_16646061_SNP [dm3] 2L_16646061_SNP [dm6]	C	A	1.815e^-5	0.334	INTRON CG42389
2L	16646062	2L_16646062_SNP [dm3] 2L_16646062_SNP [dm6]	A	T	1.815e^-5	0.334	INTRON CG42389
2L	8528806	2L_8528806_SNP [dm3] 2L_8528806_SNP [dm6]	A	C	1.875e^-5	0.342	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3383322	3L_3383322_SNP [dm3] 3L_3383322_SNP [dm6]	C	A	1.904e^-5	0.343	INTERGENIC
2L	4420425	2L_4420425_SNP [dm3] 2L_4420425_SNP [dm6]	T	C	1.930e^-5	0.343	INTRON CG15431
2L	16646064	2L_16646064_DEL [dm3] 2L_16646064_DEL [dm6]	TCC	T	1.966e^-5	0.343	INTRON CG42389
3R	11085791	3R_11085791_SNP [dm3] 3R_15260069_SNP [dm6]	A	C	1.985e^-5	0.343	UTR_3_PRIME Su_var_3-9 INTRON eIF-2gamma
3L	2273459	3L_2273459_SNP [dm3] 3L_2273459_SNP [dm6]	A	C	1.994e^-5	0.343	UPSTREAM tRNA:CR32303 & 1 other INTERGENIC
X	11413018	X_11413018_SNP [dm3] X_11518985_SNP [dm6]	T	A	1.996e^-5	0.343	INTRON Drak
2L	8529275	2L_8529275_SNP [dm3] 2L_8529275_SNP [dm6]	A	G	2.045e^-5	0.348	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
3L	3384002	3L_3384002_SNP [dm3] 3L_3384002_SNP [dm6]	C	T	2.062e^-5	0.348	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11838608	2R_11838608_SNP [dm3] 2R_15951103_SNP [dm6]	C	A	2.226e^-5	0.373	UTR_5_PRIME Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck
2R	10829678	2R_10829678_SNP [dm3] 2R_14942173_SNP [dm6]	A	G	2.293e^-5	0.381	UPSTREAM CG10257 INTERGENIC
2L	7775191	2L_7775191_SNP [dm3] 2L_7775191_SNP [dm6]	C	T	2.345e^-5	0.386	DOWNSTREAM CG7179 & 1 other INTERGENIC
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	2.428e^-5	0.396	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3384712	3L_3384712_SNP [dm3] 3L_3384712_SNP [dm6]	A	G	2.494e^-5	0.403	INTERGENIC
2L	1626848	2L_1626848_SNP [dm3] 2L_1626848_SNP [dm6]	A	G	2.654e^-5	0.425	UPSTREAM CR44603 INTERGENIC
2L	16584336	2L_16584336_SNP [dm3] 2L_16584336_SNP [dm6]	T	A	2.765e^-5	0.436	INTRON CG42389
X	9041241	X_9041241_SNP [dm3] X_9147208_SNP [dm6]	G	C	2.781e^-5	0.436	NON_SYNONYMOUS_CODING CG7065 DOWNSTREAM fh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8529325	2L_8529325_SNP [dm3] 2L_8529325_SNP [dm6]	G	T	2.789e^-5	0.436	START_GAINED CG17834 UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
3L	3384308	3L_3384308_SNP [dm3] 3L_3384308_SNP [dm6]	G	A	2.883e^-5	0.447	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4420575	2L_4420575_SNP [dm3] 2L_4420575_SNP [dm6]	G	C	2.918e^-5	0.449	INTRON CG15431
3R	10349311	3R_10349311_SNP [dm3] 3R_14523589_SNP [dm6]	A	G	2.996e^-5	0.454	SYNONYMOUS_CODING Pde6 DOWNSTREAM Cyp313a1
3L	3384760	3L_3384760_SNP [dm3] 3L_3384760_SNP [dm6]	T	G	3.004e^-5	0.454	INTERGENIC
3R	9567283	3R_9567283_SNP [dm3] 3R_13741561_SNP [dm6]	T	A	3.044e^-5	0.456	INTRON CG34383
X	20029550	X_20029550_SNP [dm3] X_20135517_SNP [dm6]	T	C	3.060e^-5	0.456	INTRON CG15322
2L	16646057	2L_16646057_SNP [dm3] 2L_16646057_SNP [dm6]	A	C	3.176e^-5	0.467	INTRON CG42389
2L	8529795	2L_8529795_SNP [dm3] 2L_8529795_SNP [dm6]	G	T	3.190e^-5	0.467	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	7781863	2L_7781863_SNP [dm3] 2L_7781863_SNP [dm6]	T	G	3.255e^-5	0.473	DOWNSTREAM Uro INTRON CG7164	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13928160	2R_13928160_SNP [dm3] 2R_18040655_SNP [dm6]	G	A	3.293e^-5	0.475	INTERGENIC
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	3.368e^-5	0.479	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	12933316	3R_12933316_SNP [dm3] 3R_17107594_SNP [dm6]	G	A	3.372e^-5	0.479	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3384232	3L_3384232_SNP [dm3] 3L_3384232_SNP [dm6]	G	A	3.422e^-5	0.48	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	11413000	X_11413000_SNP [dm3] X_11518967_SNP [dm6]	T	C	3.431e^-5	0.48	INTRON Drak
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	3.704e^-5	0.515	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3589046	2L_3589046_SNP [dm3] 2L_3589046_SNP [dm6]	C	A	3.752e^-5	0.518	EXON CR43823	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	11086145	3R_11086145_SNP [dm3] 3R_15260423_SNP [dm6]	A	G	3.788e^-5	0.519	SYNONYMOUS_CODING Su_var_3-9 INTRON eIF-2gamma
X	9884646	X_9884646_SNP [dm3] X_9990613_SNP [dm6]	T	C	3.832e^-5	0.519	INTRON CG32694
2L	15013402	2L_15013402_SNP [dm3] 2L_15013402_SNP [dm6]	A	T	3.866e^-5	0.519	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18281744	2L_18281744_SNP [dm3] 2L_18281744_SNP [dm6]	T	G	3.892e^-5	0.519	INTERGENIC
2L	8510360	2L_8510360_SNP [dm3] 2L_8510360_SNP [dm6]	T	A	3.916e^-5	0.519	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16706639	2R_16706639_SNP [dm3] 2R_20819134_SNP [dm6]	C	T	4.008e^-5	0.519	INTERGENIC
2L	12529499	2L_12529499_SNP [dm3] 2L_12529499_SNP [dm6]	G	A	4.012e^-5	0.519	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11838614	2R_11838614_SNP [dm3] 2R_15951109_SNP [dm6]	C	T	4.016e^-5	0.519	UTR_5_PRIME Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck
2L	6902401	2L_6902401_SNP [dm3] 2L_6902401_SNP [dm6]	T	A	4.049e^-5	0.519	SYNONYMOUS_CODING Nlg2 DOWNSTREAM mir-932
X	13828560	X_13828560_SNP [dm3] X_13934527_SNP [dm6]	C	A	4.050e^-5	0.519	INTRON mamo	TF binding site mE1_TFBS_HSA
2L	16646059	2L_16646059_SNP [dm3] 2L_16646059_SNP [dm6]	T	G	4.070e^-5	0.519	INTRON CG42389
3R	7133704	3R_7133704_DEL [dm3] 3R_11307982_DEL [dm6]	TACAAAT	T	4.115e^-5	0.519	INTERGENIC
2L	13729664	2L_13729664_SNP [dm3] 2L_13729664_SNP [dm6]	T	C	4.131e^-5	0.519	INTERGENIC
2L	10904775	2L_10904775_SNP [dm3] 2L_10904775_SNP [dm6]	A	G	4.151e^-5	0.519	UPSTREAM CR45724 INTERGENIC
3R	19243318	3R_19243318_SNP [dm3] 3R_23417596_SNP [dm6]	T	C	4.210e^-5	0.523	INTRON CG4374	TF binding site mE1_TFBS_chinmo
X	20029810	X_20029810_SNP [dm3] X_20135777_SNP [dm6]	C	G	4.250e^-5	0.524	INTRON CG15322	TF binding site mE1_TFBS_chinmo
3L	7609848	3L_7609848_DEL [dm3] 3L_7616748_DEL [dm6]	AGC	A	4.286e^-5	0.525	INTRON CG33275
2L	7775124	2L_7775124_SNP [dm3] 2L_7775124_SNP [dm6]	T	A	4.316e^-5	0.526	DOWNSTREAM CG7179 & 1 other INTERGENIC
X	9884635	X_9884635_SNP [dm3] X_9990602_SNP [dm6]	A	C	4.399e^-5	0.532	INTRON CG32694
2L	14205411	2L_14205411_SNP [dm3] 2L_14205411_SNP [dm6]	A	T	4.491e^-5	0.539	INTRON Dyrk2
3R	9567301	3R_9567301_SNP [dm3] 3R_13741579_SNP [dm6]	T	C	4.514e^-5	0.539	INTRON CG34383
3L	4440939	3L_4440939_SNP [dm3] 3L_4440939_SNP [dm6]	T	G	4.538e^-5	0.539	INTERGENIC
2R	7363099	2R_7363099_SNP [dm3] 2R_11475594_SNP [dm6]	C	T	4.593e^-5	0.542	START_GAINED inv UTR_5_PRIME inv UPSTREAM inv	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3383452	3L_3383452_SNP [dm3] 3L_3383452_SNP [dm6]	T	C	4.730e^-5	0.554	INTERGENIC
2L	7775133	2L_7775133_SNP [dm3] 2L_7775133_SNP [dm6]	T	C	4.755e^-5	0.554	DOWNSTREAM CG7179 & 1 other INTERGENIC
2L	8531131	2L_8531131_SNP [dm3] 2L_8531131_SNP [dm6]	C	A	5.049e^-5	0.569	INTRON CG17834
3L	3384039	3L_3384039_SNP [dm3] 3L_3384039_SNP [dm6]	G	A	5.074e^-5	0.569	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16127483	2L_16127483_SNP [dm3] 2L_16127483_SNP [dm6]	A	G	5.109e^-5	0.569	INTERGENIC
X	11412934	X_11412934_SNP [dm3] X_11518901_SNP [dm6]	G	A	5.121e^-5	0.569	INTRON Drak
3L	3385109	3L_3385109_SNP [dm3] 3L_3385109_SNP [dm6]	A	C	5.143e^-5	0.569	INTERGENIC
X	11413008	X_11413008_INS [dm3] X_11518975_INS [dm6]	C	CA	5.167e^-5	0.569	INTRON Drak
X	11413012	X_11413012_SNP [dm3] X_11518979_SNP [dm6]	G	A	5.167e^-5	0.569	INTRON Drak
X	11413016	X_11413016_SNP [dm3] X_11518983_SNP [dm6]	A	T	5.167e^-5	0.569	INTRON Drak
3R	26039539	3R_26039539_SNP [dm3] 3R_30213817_SNP [dm6]	G	A	5.174e^-5	0.569	UPSTREAM CecB DOWNSTREAM Cec2 INTERGENIC
2R	11838610	2R_11838610_SNP [dm3] 2R_15951105_SNP [dm6]	A	T	5.185e^-5	0.569	UTR_5_PRIME Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck
3L	3384730	3L_3384730_SNP [dm3] 3L_3384730_SNP [dm6]	G	A	5.358e^-5	0.584	INTERGENIC
3L	4440929	3L_4440929_SNP [dm3] 3L_4440929_SNP [dm6]	T	C	5.389e^-5	0.584	INTERGENIC
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	5.443e^-5	0.587	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
3R	26488830	3R_26488830_SNP [dm3] 3R_30663108_SNP [dm6]	C	A	5.695e^-5	0.603	INTERGENIC
2L	17070293	2L_17070293_SNP [dm3] 2L_17070293_SNP [dm6]	G	A	5.735e^-5	0.603	INTERGENIC
3L	3382955	3L_3382955_SNP [dm3] 3L_3382955_SNP [dm6]	G	A	5.737e^-5	0.603	INTERGENIC
2L	6976938	2L_6976938_SNP [dm3] 2L_6976938_SNP [dm6]	G	T	5.744e^-5	0.603	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	26488763	3R_26488763_SNP [dm3] 3R_30663041_SNP [dm6]	C	A	5.753e^-5	0.603	INTERGENIC
2L	16645985	2L_16645985_SNP [dm3] 2L_16645985_SNP [dm6]	G	C	5.792e^-5	0.604	INTRON CG42389
3R	23727393	3R_23727393_SNP [dm3] 3R_27901671_SNP [dm6]	C	T	5.897e^-5	0.611	INTRON CG34353
3L	3382671	3L_3382671_SNP [dm3] 3L_3382671_SNP [dm6]	A	C	6.081e^-5	0.624	INTERGENIC
3L	700179	3L_700179_SNP [dm3] 3L_700179_SNP [dm6]	C	T	6.097e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	10454537	2L_10454537_SNP [dm3] 2L_10454537_SNP [dm6]	A	T	6.121e^-5	0.624	SYNONYMOUS_CODING CG5322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	6.264e^-5	0.635	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4438967	3L_4438967_SNP [dm3] 3L_4438967_SNP [dm6]	G	T	6.320e^-5	0.635	DOWNSTREAM CG15021 INTERGENIC
3R	22189166	3R_22189166_SNP [dm3] 3R_26363444_SNP [dm6]	T	C	6.331e^-5	0.635	DOWNSTREAM CG33970 INTERGENIC
2L	7775159	2L_7775159_SNP [dm3] 2L_7775159_SNP [dm6]	G	C	6.387e^-5	0.636	DOWNSTREAM CG7179 & 1 other INTERGENIC
X	12918227	X_12918227_SNP [dm3] X_13024194_SNP [dm6]	T	C	6.412e^-5	0.636	INTRON rad
2L	15893941	2L_15893941_SNP [dm3] 2L_15893941_SNP [dm6]	C	T	6.481e^-5	0.64	UPSTREAM Tep1 INTERGENIC
2R	11264106	2R_11264106_SNP [dm3] 2R_15376601_SNP [dm6]	T	C	6.577e^-5	0.642	UPSTREAM CR43105 & 1 other DOWNSTREAM dup INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	14356242	3L_14356242_SNP [dm3] 3L_14363142_SNP [dm6]	G	C	6.610e^-5	0.642	INTRON fz
3R	10817730	3R_10817730_DEL [dm3] 3R_14992008_DEL [dm6]	AA	A	6.610e^-5	0.642	INTERGENIC
2L	6977064	2L_6977064_SNP [dm3] 2L_6977064_SNP [dm6]	C	G	6.722e^-5	0.648	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	15414071	X_15414071_SNP [dm3] X_15520038_SNP [dm6]	C	T	6.738e^-5	0.648	SYNONYMOUS_CODING Ac13E
X	13694790	X_13694790_SNP [dm3] X_13800757_SNP [dm6]	C	A	6.818e^-5	0.652	INTRON inaE
2L	4420353	2L_4420353_SNP [dm3] 2L_4420353_SNP [dm6]	G	A	6.957e^-5	0.661	INTRON CG15431
3R	21030925	3R_21030925_SNP [dm3] 3R_25205203_SNP [dm6]	G	A	6.982e^-5	0.661	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
3R	23938683	3R_23938683_SNP [dm3] 3R_28112961_SNP [dm6]	C	T	7.050e^-5	0.664	INTERGENIC
3L	8920622	3L_8920622_SNP [dm3] 3L_8927522_SNP [dm6]	A	G	7.099e^-5	0.666	INTRON Tsp66E
2L	4893321	2L_4893321_SNP [dm3] 2L_4893321_SNP [dm6]	A	G	7.271e^-5	0.669	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15818099	2L_15818099_SNP [dm3] 2L_15818099_SNP [dm6]	A	T	7.307e^-5	0.669	INTERGENIC
2L	16646017	2L_16646017_SNP [dm3] 2L_16646017_SNP [dm6]	G	A	7.332e^-5	0.669	INTRON CG42389
2L	16646038	2L_16646038_INS [dm3] 2L_16646038_INS [dm6]	C	CC	7.332e^-5	0.669	INTRON CG42389
2L	9879514	2L_9879514_SNP [dm3] 2L_9879514_SNP [dm6]	A	G	7.350e^-5	0.669	INTRON nAChRalpha6
2R	11264113	2R_11264113_SNP [dm3] 2R_15376608_SNP [dm6]	G	T	7.382e^-5	0.669	UPSTREAM CR43105 & 1 other DOWNSTREAM dup INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	23059874	3R_23059874_SNP [dm3] 3R_27234152_SNP [dm6]	A	G	7.462e^-5	0.669	SYNONYMOUS_CODING CG31068 INTRON CG31064
2L	22037643	2L_22037643_SNP [dm3] 2L_22037643_SNP [dm6]	C	A	7.467e^-5	0.669	UPSTREAM CG41434 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14881576	2L_14881576_DEL [dm3] 2L_14881576_DEL [dm6]	ATAA	A	7.531e^-5	0.669	UTR_5_PRIME Mst35Ba DOWNSTREAM Mst35Bb
3L	3385002	3L_3385002_SNP [dm3] 3L_3385002_SNP [dm6]	T	G	7.544e^-5	0.669	INTERGENIC
X	21214510	X_21214510_SNP [dm3] X_21343483_SNP [dm6]	C	T	7.552e^-5	0.669	INTRON fliI	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1745242	3L_1745242_SNP [dm3] 3L_1745242_SNP [dm6]	C	T	7.570e^-5	0.669	UTR_3_PRIME Gk	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17177137	3R_17177137_SNP [dm3] 3R_21351415_SNP [dm6]	T	C	7.672e^-5	0.669	DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17325574	3R_17325574_SNP [dm3] 3R_21499852_SNP [dm6]	G	A	7.693e^-5	0.669	UPSTREAM C15 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3059779	2R_3059779_SNP [dm3] 2R_7172274_SNP [dm6]	G	A	7.713e^-5	0.669	UTR_5_PRIME pk INTRON pk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	975754	3L_975754_SNP [dm3] 3L_975754_SNP [dm6]	T	C	7.715e^-5	0.669	INTRON Glut1
3R	23727385	3R_23727385_SNP [dm3] 3R_27901663_SNP [dm6]	T	A	7.738e^-5	0.669	INTRON CG34353
2R	14553550	2R_14553550_SNP [dm3] 2R_18666045_SNP [dm6]	C	A	7.798e^-5	0.671	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2R	14813145	2R_14813145_SNP [dm3] 2R_18925640_SNP [dm6]	T	A	7.856e^-5	0.673	INTRON sano
2L	7781946	2L_7781946_SNP [dm3] 2L_7781946_SNP [dm6]	G	T	7.918e^-5	0.675	SYNONYMOUS_CODING CG7164 UPSTREAM CG7154 DOWNSTREAM Uro	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15815994	2L_15815994_SNP [dm3] 2L_15815994_SNP [dm6]	C	T	8.058e^-5	0.684	INTERGENIC
3R	23938689	3R_23938689_SNP [dm3] 3R_28112967_SNP [dm6]	T	C	8.120e^-5	0.685	INTERGENIC
3L	3383421	3L_3383421_SNP [dm3] 3L_3383421_SNP [dm6]	G	A	8.239e^-5	0.685	INTERGENIC
2L	4363521	2L_4363521_SNP [dm3] 2L_4363521_SNP [dm6]	G	A	8.271e^-5	0.685	DOWNSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	4786940	2L_4786940_SNP [dm3] 2L_4786940_SNP [dm6]	C	T	8.373e^-5	0.685	INTRON CG15630
2L	16646045	2L_16646045_SNP [dm3] 2L_16646045_SNP [dm6]	G	A	8.410e^-5	0.685	INTRON CG42389
2R	12522772	2R_12522772_SNP [dm3] 2R_16635267_SNP [dm6]	A	G	8.436e^-5	0.685	INTRON Alk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6697215	2L_6697215_SNP [dm3] 2L_6697215_SNP [dm6]	A	T	8.463e^-5	0.685	INTRON Tsp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3321307	2L_3321307_SNP [dm3] 2L_3321307_SNP [dm6]	T	G	8.570e^-5	0.685	INTRON CG8837	TF binding site mE1_TFBS_chinmo
3L	3380705	3L_3380705_SNP [dm3] 3L_3380705_SNP [dm6]	C	T	8.570e^-5	0.685	DOWNSTREAM CG12014 INTERGENIC
2R	7362629	2R_7362629_SNP [dm3] 2R_11475124_SNP [dm6]	T	C	8.582e^-5	0.685	UTR_5_PRIME inv UPSTREAM inv	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7788534	2L_7788534_SNP [dm3] 2L_7788534_SNP [dm6]	T	A	8.588e^-5	0.685	INTRON CG7149
X	14849195	X_14849195_SNP [dm3] X_14955162_SNP [dm6]	C	A	8.618e^-5	0.685	UPSTREAM eag & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	8.640e^-5	0.685	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13411548	3R_13411548_SNP [dm3] 3R_17585826_SNP [dm6]	T	G	8.641e^-5	0.685	INTERGENIC
X	19666014	X_19666014_SNP [dm3] X_19771981_SNP [dm6]	C	T	8.780e^-5	0.685	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19511977	3L_19511977_SNP [dm3] 3L_19518877_SNP [dm6]	T	A	8.795e^-5	0.685	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3R	25204555	3R_25204555_INS [dm3] 3R_29378833_INS [dm6]	C	CCTC	8.907e^-5	0.685	INTRON Ptp99A
3R	11088937	3R_11088937_SNP [dm3] 3R_15263215_SNP [dm6]	T	C	8.936e^-5	0.685	UPSTREAM Set & 1 other INTRON Su_var_3-9 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	10040383	2L_10040383_SNP [dm3] 2L_10040383_SNP [dm6]	T	A	8.948e^-5	0.685	INTERGENIC
3L	8709045	3L_8709045_SNP [dm3] 3L_8715945_SNP [dm6]	C	T	8.949e^-5	0.685	INTERGENIC
2L	12609672	2L_12609672_SNP [dm3] 2L_12609672_SNP [dm6]	T	A	8.982e^-5	0.685	DOWNSTREAM Ref2 INTRON nub	TF binding site BDTNP1_TFBS_dl
X	21062308	X_21062308_SNP [dm3] X_21191281_SNP [dm6]	G	T	8.999e^-5	0.685	INTERGENIC	transposable element FlyBase
X	9884626	X_9884626_SNP [dm3] X_9990593_SNP [dm6]	G	T	9.011e^-5	0.685	INTRON CG32694
2L	7781984	2L_7781984_SNP [dm3] 2L_7781984_SNP [dm6]	T	C	9.017e^-5	0.685	NON_SYNONYMOUS_CODING CG7164 UPSTREAM CG7154 DOWNSTREAM Uro	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18319634	2L_18319634_SNP [dm3] 2L_18319634_SNP [dm6]	C	A	9.065e^-5	0.685	UPSTREAM Fas3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	975748	3L_975748_SNP [dm3] 3L_975748_SNP [dm6]	T	A	9.067e^-5	0.685	INTRON Glut1
X	7191546	X_7191546_SNP [dm3] X_7297513_SNP [dm6]	C	T	9.131e^-5	0.685	INTRON CR44357 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1625977	2L_1625977_SNP [dm3] 2L_1625977_SNP [dm6]	G	T	9.180e^-5	0.685	EXON CR44603
2L	15888186	2L_15888186_SNP [dm3] 2L_15888186_SNP [dm6]	C	T	9.181e^-5	0.685	DOWNSTREAM Tep1 EXON CR31824
2L	7411279	2L_7411279_SNP [dm3] 2L_7411279_SNP [dm6]	G	C	9.249e^-5	0.685	NON_SYNONYMOUS_CODING CG15818	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
3L	3382271	3L_3382271_SNP [dm3] 3L_3382271_SNP [dm6]	T	G	9.315e^-5	0.685	INTERGENIC
3L	3382416	3L_3382416_SNP [dm3] 3L_3382416_SNP [dm6]	C	T	9.315e^-5	0.685	INTERGENIC
3R	11101473	3R_11101473_SNP [dm3] 3R_15275751_SNP [dm6]	A	G	9.361e^-5	0.685	SYNONYMOUS_CODING CG4338 UPSTREAM Cp190 DOWNSTREAM MRG15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	7889385	3R_7889385_SNP [dm3] 3R_12063663_SNP [dm6]	T	A	9.378e^-5	0.685	UPSTREAM CG14740 INTERGENIC
2L	20554526	2L_20554526_SNP [dm3] 2L_20554526_SNP [dm6]	A	G	9.397e^-5	0.685	INTERGENIC
3L	16215972	3L_16215972_SNP [dm3] 3L_16222872_SNP [dm6]	G	A	9.420e^-5	0.685	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22794881	3R_22794881_SNP [dm3] 3R_26969159_SNP [dm6]	C	G	9.451e^-5	0.685	INTRON CG5521
3R	12658659	3R_12658659_SNP [dm3] 3R_16832937_SNP [dm6]	C	T	9.511e^-5	0.685	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	18603122	2L_18603122_INS [dm3] 2L_18603122_INS [dm6]	C	GT	9.548e^-5	0.685	INTRON CG10413
3R	13164450	3R_13164450_SNP [dm3] 3R_17338728_SNP [dm6]	A	T	9.559e^-5	0.685	INTRON beat-IIa
3R	17177162	3R_17177162_SNP [dm3] 3R_21351440_SNP [dm6]	G	A	9.638e^-5	0.685	DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9566689	3R_9566689_SNP [dm3] 3R_13740967_SNP [dm6]	G	A	9.640e^-5	0.685	INTRON CG34383
2R	5861507	2R_5861507_SNP [dm3] 2R_9974002_SNP [dm6]	T	C	9.643e^-5	0.685	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	10577114	2R_10577114_SNP [dm3] 2R_14689609_SNP [dm6]	T	G	9.737e^-5	0.687	INTRON mspo
2L	10546033	2L_10546033_SNP [dm3] 2L_10546033_SNP [dm6]	T	C	9.743e^-5	0.687	SYNONYMOUS_CODING Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15882969	2L_15882969_SNP [dm3] 2L_15882969_SNP [dm6]	G	A	9.866e^-5	0.69	NON_SYNONYMOUS_CODING CG44475
3R	22391558	3R_22391558_DEL [dm3] 3R_26565836_DEL [dm6]	GG	G	9.885e^-5	0.69	INTRON scrib	TF binding site mE1_TFBS_bab1
X	11412733	X_11412733_SNP [dm3] X_11518700_SNP [dm6]	C	T	9.939e^-5	0.69	INTRON Drak
2R	8248448	2R_8248448_SNP [dm3] 2R_12360943_SNP [dm6]	T	A	9.940e^-5	0.69	INTRON CG30043
2R	7362008	2R_7362008_SNP [dm3] 2R_11474503_SNP [dm6]	T	A	1.003e^-4	0.693	UTR_5_PRIME inv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	11086019	3R_11086019_SNP [dm3] 3R_15260297_SNP [dm6]	G	A	1.006e^-4	0.693	SYNONYMOUS_CODING Su_var_3-9 INTRON eIF-2gamma
X	19666078	X_19666078_SNP [dm3] X_19772045_SNP [dm6]	C	A	1.009e^-4	0.693	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	1.014e^-4	0.694	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6800561	3L_6800561_SNP [dm3] 3L_6807461_SNP [dm6]	G	A	1.017e^-4	0.694	INTERGENIC
3R	11089392	3R_11089392_SNP [dm3] 3R_15263670_SNP [dm6]	A	C	1.027e^-4	0.697	UTR_5_PRIME Set UPSTREAM eIF-2gamma & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	13567722	2L_13567722_SNP [dm3] 2L_13567722_SNP [dm6]	A	G	1.029e^-4	0.697	INTRON kuz
3R	7437895	3R_7437895_SNP [dm3] 3R_11612173_SNP [dm6]	A	G	1.042e^-4	0.7	INTRON Jupiter
2R	11506786	2R_11506786_SNP [dm3] 2R_15619281_SNP [dm6]	G	A	1.044e^-4	0.7	INTRON CG42524
2L	11297522	2L_11297522_SNP [dm3] 2L_11297522_SNP [dm6]	A	G	1.048e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	17371345	2R_17371345_SNP [dm3] 2R_21483840_SNP [dm6]	G	T	1.049e^-4	0.7	NON_SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14924547	3R_14924547_SNP [dm3] 3R_19098825_SNP [dm6]	C	G	1.062e^-4	0.704	INTRON CG6040
3L	15590856	3L_15590856_SNP [dm3] 3L_15597756_SNP [dm6]	G	C	1.063e^-4	0.704	INTRON RhoGAP71E
3L	8791915	3L_8791915_SNP [dm3] 3L_8798815_SNP [dm6]	T	A	1.072e^-4	0.708	UTR_3_PRIME CG13310 DOWNSTREAM Fhos
2R	11963898	2R_11963898_SNP [dm3] 2R_16076393_SNP [dm6]	C	T	1.081e^-4	0.712	INTERGENIC
3L	3381561	3L_3381561_SNP [dm3] 3L_3381561_SNP [dm6]	T	C	1.088e^-4	0.713	INTERGENIC
3R	11902808	3R_11902808_SNP [dm3] 3R_16077086_SNP [dm6]	C	T	1.093e^-4	0.713	UPSTREAM Mhcl INTRON Mhcl
3L	9541392	3L_9541392_SNP [dm3] 3L_9548292_SNP [dm6]	A	G	1.102e^-4	0.713	INTRON CG42673
2L	14277280	2L_14277280_SNP [dm3] 2L_14277280_SNP [dm6]	T	A	1.104e^-4	0.713	UTR_5_PRIME CG32971 INTRON wb & 1 other
2L	1947456	2L_1947456_SNP [dm3] 2L_1947456_SNP [dm6]	A	G	1.105e^-4	0.713	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	27224137	3R_27224137_SNP [dm3] 3R_31398415_SNP [dm6]	A	G	1.106e^-4	0.713	NON_SYNONYMOUS_CODING Gcn2
2R	7363127	2R_7363127_SNP [dm3] 2R_11475622_SNP [dm6]	C	T	1.138e^-4	0.731	UTR_5_PRIME inv UPSTREAM inv	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3380467	3L_3380467_SNP [dm3] 3L_3380467_SNP [dm6]	G	A	1.147e^-4	0.732	DOWNSTREAM CG12014 INTERGENIC
3R	27229810	3R_27229810_SNP [dm3] 3R_31404088_SNP [dm6]	G	T	1.151e^-4	0.732	SYNONYMOUS_CODING CG11337	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	13236330	3R_13236330_SNP [dm3] 3R_17410608_SNP [dm6]	G	C	1.154e^-4	0.732	SYNONYMOUS_CODING CG5860 UPSTREAM CG5863
3R	25720510	3R_25720510_SNP [dm3] 3R_29894788_SNP [dm6]	G	A	1.158e^-4	0.732	UPSTREAM CG31038 INTRON CG31038	TF binding site BDTNP1_TFBS_twi
3R	19511613	3R_19511613_SNP [dm3] 3R_23685891_SNP [dm6]	T	G	1.158e^-4	0.732	UTR_3_PRIME CG18754 UPSTREAM SPE
3R	11098511	3R_11098511_SNP [dm3] 3R_15272789_SNP [dm6]	A	G	1.175e^-4	0.74	SYNONYMOUS_CODING Cp190	TF binding site mE1_TFBS_sens
2R	11964471	2R_11964471_SNP [dm3] 2R_16076966_SNP [dm6]	C	G	1.183e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5088269	3L_5088269_SNP [dm3] 3L_5088269_SNP [dm6]	T	A	1.185e^-4	0.74	INTERGENIC
3R	21386898	3R_21386898_SNP [dm3] 3R_25561176_SNP [dm6]	C	A	1.188e^-4	0.74	INTRON msi
3L	3380866	3L_3380866_SNP [dm3] 3L_3380866_SNP [dm6]	T	A	1.200e^-4	0.741	DOWNSTREAM CG12014 INTERGENIC
2R	7820961	2R_7820961_SNP [dm3] 2R_11933456_SNP [dm6]	C	G	1.205e^-4	0.741	INTERGENIC
3L	3382500	3L_3382500_SNP [dm3] 3L_3382500_SNP [dm6]	A	G	1.208e^-4	0.741	INTERGENIC
2L	12613306	2L_12613306_SNP [dm3] 2L_12613306_SNP [dm6]	T	A	1.212e^-4	0.741	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	7362974	2R_7362974_SNP [dm3] 2R_11475469_SNP [dm6]	C	T	1.216e^-4	0.741	START_GAINED inv UTR_5_PRIME inv UPSTREAM inv	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26407412	3R_26407412_SNP [dm3] 3R_30581690_SNP [dm6]	T	C	1.217e^-4	0.741	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
3R	23566678	3R_23566678_SNP [dm3] 3R_27740956_SNP [dm6]	G	A	1.217e^-4	0.741	INTRON Ets98B
3R	21422502	3R_21422502_SNP [dm3] 3R_25596780_SNP [dm6]	A	T	1.230e^-4	0.743	INTRON ymp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5644952	2L_5644952_SNP [dm3] 2L_5644952_SNP [dm6]	T	G	1.242e^-4	0.743	INTRON CG31646
2R	17065914	2R_17065914_SNP [dm3] 2R_21178409_SNP [dm6]	T	C	1.244e^-4	0.743	SYNONYMOUS_CODING CG4286 UPSTREAM Pu INTRON Pu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	15817332	2L_15817332_SNP [dm3] 2L_15817332_SNP [dm6]	T	C	1.246e^-4	0.743	INTERGENIC
2L	12529687	2L_12529687_SNP [dm3] 2L_12529687_SNP [dm6]	C	T	1.252e^-4	0.743	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7362126	2R_7362126_SNP [dm3] 2R_11474621_SNP [dm6]	A	G	1.253e^-4	0.743	UTR_5_PRIME inv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	5002390	2L_5002390_SNP [dm3] 2L_5002390_SNP [dm6]	C	A	1.257e^-4	0.743	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	19665884	X_19665884_SNP [dm3] X_19771851_SNP [dm6]	G	A	1.266e^-4	0.743	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10774992	2L_10774992_SNP [dm3] 2L_10774992_SNP [dm6]	T	C	1.266e^-4	0.743	INTRON CG31869
3R	15762582	3R_15762582_SNP [dm3] 3R_19936860_SNP [dm6]	C	T	1.270e^-4	0.743	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14924513	3R_14924513_SNP [dm3] 3R_19098791_SNP [dm6]	T	C	1.275e^-4	0.743	INTRON CG6040
3L	18016174	3L_18016174_SNP [dm3] 3L_18023074_SNP [dm6]	A	T	1.287e^-4	0.743	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	5863949	2R_5863949_SNP [dm3] 2R_9976444_SNP [dm6]	G	A	1.289e^-4	0.743	DOWNSTREAM CR43948 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3919314	3L_3919314_SNP [dm3] 3L_3919314_SNP [dm6]	C	T	1.299e^-4	0.743	INTRON Eip63F-1
2L	16590974	2L_16590974_SNP [dm3] 2L_16590974_SNP [dm6]	T	C	1.306e^-4	0.743	INTRON CG42389	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4654519	2L_4654519_SNP [dm3] 2L_4654519_SNP [dm6]	C	T	1.307e^-4	0.743	INTERGENIC
2L	7784391	2L_7784391_SNP [dm3] 2L_7784391_SNP [dm6]	A	G	1.308e^-4	0.743	SYNONYMOUS_CODING CG7154	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7787598	2L_7787598_SNP [dm3] 2L_7787598_SNP [dm6]	G	T	1.310e^-4	0.743	INTRON CG7149
3R	26407379	3R_26407379_SNP [dm3] 3R_30581657_SNP [dm6]	G	A	1.315e^-4	0.743	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
2L	18319637	2L_18319637_SNP [dm3] 2L_18319637_SNP [dm6]	A	T	1.329e^-4	0.743	UPSTREAM Fas3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6697116	2L_6697116_SNP [dm3] 2L_6697116_SNP [dm6]	A	G	1.338e^-4	0.743	SYNONYMOUS_CODING Tsp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	7907100	3R_7907100_SNP [dm3] 3R_12081378_SNP [dm6]	G	C	1.344e^-4	0.743	INTRON CG14741
2L	20254114	2L_20254114_SNP [dm3] 2L_20254114_SNP [dm6]	C	T	1.347e^-4	0.743	EXON CR40465
2L	12528306	2L_12528306_SNP [dm3] 2L_12528306_SNP [dm6]	A	G	1.359e^-4	0.743	INTRON bun	TF binding site BDTNP1_TFBS_dl
3R	12934850	3R_12934850_SNP [dm3] 3R_17109128_SNP [dm6]	A	G	1.359e^-4	0.743	INTRON cher
2R	11967830	2R_11967830_SNP [dm3] 2R_16080325_SNP [dm6]	A	C	1.365e^-4	0.743	DOWNSTREAM Dg INTERGENIC
2L	14867158	2L_14867158_SNP [dm3] 2L_14867158_SNP [dm6]	G	C	1.371e^-4	0.743	INTERGENIC
2L	14892299	2L_14892299_SNP [dm3] 2L_14892299_SNP [dm6]	A	C	1.372e^-4	0.743	INTERGENIC
2L	14896042	2L_14896042_SNP [dm3] 2L_14896042_SNP [dm6]	A	G	1.372e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9642526	3L_9642526_SNP [dm3] 3L_9649426_SNP [dm6]	G	A	1.386e^-4	0.743	INTRON fry & 1 other
2L	1793931	2L_1793931_SNP [dm3] 2L_1793931_SNP [dm6]	C	G	1.398e^-4	0.743	NON_SYNONYMOUS_CODING Gr22a UPSTREAM Gr22b
3L	975731	3L_975731_SNP [dm3] 3L_975731_SNP [dm6]	C	T	1.404e^-4	0.743	INTRON Glut1
3R	10838951	3R_10838951_SNP [dm3] 3R_15013229_SNP [dm6]	T	C	1.406e^-4	0.743	INTERGENIC
2L	15898301	2L_15898301_SNP [dm3] 2L_15898301_SNP [dm6]	T	C	1.409e^-4	0.743	DOWNSTREAM CG31823 INTERGENIC
3R	13236329	3R_13236329_SNP [dm3] 3R_17410607_SNP [dm6]	C	T	1.410e^-4	0.743	NON_SYNONYMOUS_CODING CG5860 UPSTREAM CG5863
2L	10959291	2L_10959291_SNP [dm3] 2L_10959291_SNP [dm6]	C	T	1.412e^-4	0.743	INTRON dpr2
2L	4786816	2L_4786816_SNP [dm3] 2L_4786816_SNP [dm6]	T	C	1.421e^-4	0.743	INTRON CG15630
2L	10875209	2L_10875209_SNP [dm3] 2L_10875209_SNP [dm6]	G	A	1.421e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12317283	2R_12317283_INS [dm3] 2R_16429778_INS [dm6]	T	TT	1.422e^-4	0.743	UTR_3_PRIME Sema-2b
X	18607507	X_18607507_SNP [dm3] X_18713474_SNP [dm6]	C	T	1.426e^-4	0.743	NON_SYNONYMOUS_CODING CCKLR-17D1	TF binding site mE1_TFBS_chinmo
2L	8515362	2L_8515362_SNP [dm3] 2L_8515362_SNP [dm6]	T	G	1.426e^-4	0.743	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	8213887	3L_8213887_SNP [dm3] 3L_8220787_SNP [dm6]	G	T	1.438e^-4	0.743	INTERGENIC
2L	9870527	2L_9870527_SNP [dm3] 2L_9870527_SNP [dm6]	G	A	1.444e^-4	0.743	SPLICE_SITE_REGION nAChRalpha6 INTRON nAChRalpha6
2R	16427344	2R_16427344_INS [dm3] 2R_20539839_INS [dm6]	T	TATATATATATATATATA...	1.446e^-4	0.743	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11264129	2R_11264129_SNP [dm3] 2R_15376624_SNP [dm6]	A	C	1.446e^-4	0.743	UTR_3_PRIME dup UPSTREAM CR43105 & 1 other	TF binding site BDTNP1_TFBS_hb
2L	15811422	2L_15811422_SNP [dm3] 2L_15811422_SNP [dm6]	A	G	1.452e^-4	0.743	SYNONYMOUS_CODING CG42876	TF binding site BDTNP1_TFBS_da
2L	15865753	2L_15865753_SNP [dm3] 2L_15865753_SNP [dm6]	T	A	1.459e^-4	0.743	UPSTREAM CG42792 INTERGENIC
X	5067244	X_5067244_SNP [dm3] X_5173211_SNP [dm6]	A	C	1.463e^-4	0.743	INTRON rg & 1 other	TF binding site mE1_TFBS_HSA
3R	10349491	3R_10349491_SNP [dm3] 3R_14523769_SNP [dm6]	A	C	1.464e^-4	0.743	DOWNSTREAM Cyp313a1 INTRON Pde6
2L	5969945	2L_5969945_SNP [dm3] 2L_5969945_SNP [dm6]	A	T	1.469e^-4	0.743	NON_SYNONYMOUS_CODING Ucp4B DOWNSTREAM Ucp4C EXON CR43465	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11508165	2R_11508165_SNP [dm3] 2R_15620660_SNP [dm6]	T	A	1.472e^-4	0.743	INTRON CG42524	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4786836	2L_4786836_SNP [dm3] 2L_4786836_SNP [dm6]	T	C	1.474e^-4	0.743	INTRON CG15630
2L	17528488	2L_17528488_SNP [dm3] 2L_17528488_SNP [dm6]	T	G	1.477e^-4	0.743	SYNONYMOUS_CODING CG15144 DOWNSTREAM CG15145
2R	19396940	2R_19396940_SNP [dm3] 2R_23509417_SNP [dm6]	G	A	1.484e^-4	0.743	INTERGENIC
X	3228430	X_3228430_INS [dm3] X_3334397_INS [dm6]	T	TT	1.484e^-4	0.743	INTRON CR44886 & 1 other
2R	11961653	2R_11961653_SNP [dm3] 2R_16074148_SNP [dm6]	G	T	1.486e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15890638	2L_15890638_SNP [dm3] 2L_15890638_SNP [dm6]	C	G	1.488e^-4	0.743	NON_SYNONYMOUS_CODING Tep1
2R	7362085	2R_7362085_SNP [dm3] 2R_11474580_SNP [dm6]	G	A	1.491e^-4	0.743	UTR_5_PRIME inv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	3381551	3L_3381551_SNP [dm3] 3L_3381551_SNP [dm6]	C	A	1.493e^-4	0.743	INTERGENIC
3R	19355508	3R_19355508_SNP [dm3] 3R_23529786_SNP [dm6]	G	A	1.495e^-4	0.743	UPSTREAM CG10175 INTRON CG10175
3L	4438502	3L_4438502_SNP [dm3] 3L_4438502_SNP [dm6]	T	G	1.497e^-4	0.743	DOWNSTREAM CG15021 INTERGENIC
3R	24673906	3R_24673906_SNP [dm3] 3R_28848184_SNP [dm6]	T	A	1.498e^-4	0.743	INTRON spg
3R	10349555	3R_10349555_SNP [dm3] 3R_14523833_SNP [dm6]	G	C	1.500e^-4	0.743	DOWNSTREAM Cyp313a1 INTRON Pde6
2L	7775161	2L_7775161_SNP [dm3] 2L_7775161_SNP [dm6]	A	T	1.500e^-4	0.743	DOWNSTREAM CG7179 & 1 other INTERGENIC
3L	5089837	3L_5089837_SNP [dm3] 3L_5089837_SNP [dm6]	G	A	1.501e^-4	0.743	INTERGENIC
3R	10349490	3R_10349490_SNP [dm3] 3R_14523768_SNP [dm6]	A	G	1.504e^-4	0.743	DOWNSTREAM Cyp313a1 INTRON Pde6
2L	10707204	2L_10707204_SNP [dm3] 2L_10707204_SNP [dm6]	A	C	1.505e^-4	0.743	INTRON Lip2	TF binding site mE1_TFBS_inv
2L	8510267	2L_8510267_SNP [dm3] 2L_8510267_SNP [dm6]	C	T	1.506e^-4	0.743	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22262439	3R_22262439_SNP [dm3] 3R_26436717_SNP [dm6]	A	T	1.510e^-4	0.743	INTERGENIC
3R	9567215	3R_9567215_SNP [dm3] 3R_13741493_SNP [dm6]	T	C	1.513e^-4	0.743	INTRON CG34383
2L	13427829	2L_13427829_SNP [dm3] 2L_13427829_SNP [dm6]	G	A	1.514e^-4	0.743	INTRON CG42784
2R	13298980	2R_13298980_SNP [dm3] 2R_17411475_SNP [dm6]	C	T	1.517e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10701692	2R_10701692_INS [dm3] 2R_14814187_INS [dm6]	G	TAAA	1.518e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	6492118	2L_6492118_SNP [dm3] 2L_6492118_SNP [dm6]	C	T	1.519e^-4	0.743	SYNONYMOUS_CODING CG31638 DOWNSTREAM CG9547	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3384010	3L_3384010_SNP [dm3] 3L_3384010_SNP [dm6]	T	C	1.520e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	1626814	2L_1626814_SNP [dm3] 2L_1626814_SNP [dm6]	A	T	1.520e^-4	0.743	UPSTREAM CR44603 INTERGENIC
2L	990251	2L_990251_SNP [dm3] 2L_990251_SNP [dm6]	C	T	1.534e^-4	0.744	EXON CR44801	TF binding site mE1_TFBS_chinmo
2L	6976998	2L_6976998_SNP [dm3] 2L_6976998_SNP [dm6]	C	T	1.537e^-4	0.744	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	1.538e^-4	0.744	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9577924	3L_9577924_SNP [dm3] 3L_9584824_SNP [dm6]	T	C	1.548e^-4	0.744	INTRON CG42673
2L	16645982	2L_16645982_SNP [dm3] 2L_16645982_SNP [dm6]	G	T	1.548e^-4	0.744	INTRON CG42389
2L	12097892	2L_12097892_SNP [dm3] 2L_12097892_SNP [dm6]	T	C	1.548e^-4	0.744	UTR_5_PRIME Ced-12 DOWNSTREAM Mt2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2L	18591213	2L_18591213_SNP [dm3] 2L_18591213_SNP [dm6]	A	T	1.550e^-4	0.744	UTR_5_PRIME CG15160 UPSTREAM Pde11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14898016	2L_14898016_SNP [dm3] 2L_14898016_SNP [dm6]	G	A	1.559e^-4	0.746	INTERGENIC
2L	3219440	2L_3219440_SNP [dm3] 2L_3219440_SNP [dm6]	G	C	1.571e^-4	0.75	INTERGENIC
2L	16042145	2L_16042145_SNP [dm3] 2L_16042145_SNP [dm6]	T	C	1.578e^-4	0.75	UTR_5_PRIME BicC & 1 other UPSTREAM BicC & 1 other DOWNSTREAM beat-Ic	TF binding site BDTNP1_TFBS_twi
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	1.579e^-4	0.75	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	25897028	3R_25897028_INS [dm3] 3R_30071306_INS [dm6]	G	GCTG	1.588e^-4	0.752	INTRON sima
3R	26090787	3R_26090787_SNP [dm3] 3R_30265065_SNP [dm6]	T	A	1.593e^-4	0.753	INTERGENIC	silencer mE1_HDAC_PRE
3L	7843356	3L_7843356_SNP [dm3] 3L_7850256_SNP [dm6]	C	T	1.597e^-4	0.753	INTRON Pdp1	regulatory region REDfly_CRMs
2R	3120120	2R_3120120_SNP [dm3] 2R_7232615_SNP [dm6]	C	G	1.611e^-4	0.757	DOWNSTREAM Or43a INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	8247936	3L_8247936_SNP [dm3] 3L_8254836_SNP [dm6]	A	C	1.615e^-4	0.757	INTRON Dscam4
3L	8534684	3L_8534684_SNP [dm3] 3L_8541584_SNP [dm6]	G	A	1.621e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18306009	2L_18306009_SNP [dm3] 2L_18306009_SNP [dm6]	T	C	1.627e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11967906	2R_11967906_SNP [dm3] 2R_16080401_SNP [dm6]	T	A	1.644e^-4	0.762	DOWNSTREAM Dg INTERGENIC
3L	1358011	3L_1358011_SNP [dm3] 3L_1358011_SNP [dm6]	T	C	1.646e^-4	0.762	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	9741971	3R_9741971_SNP [dm3] 3R_13916249_SNP [dm6]	C	T	1.650e^-4	0.762	INTERGENIC
2L	18385899	2L_18385899_SNP [dm3] 2L_18385899_SNP [dm6]	G	T	1.653e^-4	0.762	INTRON Fas3
3L	8634212	3L_8634212_SNP [dm3] 3L_8641112_SNP [dm6]	T	A	1.655e^-4	0.762	INTRON Cpr66D
3L	8634214	3L_8634214_SNP [dm3] 3L_8641114_SNP [dm6]	C	T	1.657e^-4	0.762	INTRON Cpr66D
3R	11073527	3R_11073527_SNP [dm3] 3R_15247805_SNP [dm6]	G	T	1.674e^-4	0.765	SYNONYMOUS_CODING CG6499	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5608096	2R_5608096_SNP [dm3] 2R_9720591_SNP [dm6]	T	G	1.675e^-4	0.765	INTRON sqa
2R	11828515	2R_11828515_SNP [dm3] 2R_15941010_SNP [dm6]	A	G	1.678e^-4	0.765	SYNONYMOUS_CODING CG8299 UPSTREAM Mlf	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14332778	3R_14332778_SNP [dm3] 3R_18507056_SNP [dm6]	G	A	1.682e^-4	0.765	UPSTREAM fru INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15324740	X_15324740_SNP [dm3] X_15430707_SNP [dm6]	C	G	1.685e^-4	0.765	INTRON Cngl
3R	21277862	3R_21277862_SNP [dm3] 3R_25452140_SNP [dm6]	A	T	1.691e^-4	0.766	INTRON Fur1
3R	14739298	3R_14739298_SNP [dm3] 3R_18913576_SNP [dm6]	G	A	1.704e^-4	0.77	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_Trl
X	9884486	X_9884486_SNP [dm3] X_9990453_SNP [dm6]	G	A	1.719e^-4	0.773	INTRON CG32694	TF binding site mE1_TFBS_HSA
3R	13053997	3R_13053997_SNP [dm3] 3R_17228275_SNP [dm6]	C	A	1.721e^-4	0.773	INTERGENIC
3R	11098694	3R_11098694_SNP [dm3] 3R_15272972_SNP [dm6]	T	C	1.726e^-4	0.773	SYNONYMOUS_CODING Cp190	TF binding site mE1_TFBS_sens
2L	8539516	2L_8539516_SNP [dm3] 2L_8539516_SNP [dm6]	C	T	1.731e^-4	0.773	INTRON CG17834
2L	8527887	2L_8527887_SNP [dm3] 2L_8527887_SNP [dm6]	C	A	1.731e^-4	0.773	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15204106	X_15204106_SNP [dm3] X_15310073_SNP [dm6]	C	T	1.750e^-4	0.775	INTRON gce
3R	23124702	3R_23124702_SNP [dm3] 3R_27298980_SNP [dm6]	T	A	1.751e^-4	0.775	INTRON CG3339
2L	4786859	2L_4786859_SNP [dm3] 2L_4786859_SNP [dm6]	A	G	1.762e^-4	0.775	INTRON CG15630
X	9884555	X_9884555_SNP [dm3] X_9990522_SNP [dm6]	C	T	1.768e^-4	0.775	INTRON CG32694
3R	10349493	3R_10349493_INS [dm3] 3R_14523771_INS [dm6]	C	GTGCA	1.775e^-4	0.775	DOWNSTREAM Cyp313a1 INTRON Pde6
2L	7741373	2L_7741373_SNP [dm3] 2L_7741373_SNP [dm6]	T	G	1.775e^-4	0.775	INTRON Acp1
2L	8529492	2L_8529492_SNP [dm3] 2L_8529492_SNP [dm6]	T	A	1.780e^-4	0.775	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3R	4383106	3R_4383106_SNP [dm3] 3R_8557384_SNP [dm6]	C	A	1.780e^-4	0.775	INTERGENIC
2R	7403467	2R_7403467_SNP [dm3] 2R_11515962_SNP [dm6]	T	C	1.780e^-4	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	25994049	3R_25994049_SNP [dm3] 3R_30168327_SNP [dm6]	A	G	1.786e^-4	0.775	SYNONYMOUS_CODING CG31028
2R	11293768	2R_11293768_SNP [dm3] 2R_15406263_SNP [dm6]	A	G	1.789e^-4	0.775	INTRON CG43729
3R	20326159	3R_20326159_SNP [dm3] 3R_24500437_SNP [dm6]	T	C	1.798e^-4	0.775	INTERGENIC
3L	14356716	3L_14356716_SNP [dm3] 3L_14363616_SNP [dm6]	G	A	1.800e^-4	0.775	INTRON fz
X	18531638	X_18531638_SNP [dm3] X_18637605_SNP [dm6]	T	A	1.801e^-4	0.775	INTRON Rip11	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8582399	3L_8582399_SNP [dm3] 3L_8589299_SNP [dm6]	A	T	1.803e^-4	0.775	UPSTREAM CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo
3R	19657099	3R_19657099_SNP [dm3] 3R_23831377_SNP [dm6]	C	A	1.804e^-4	0.775	INTRON CG34355
2L	19617994	2L_19617994_SNP [dm3] 2L_19617994_SNP [dm6]	C	T	1.809e^-4	0.775	INTRON Lar
X	4443340	X_4443340_SNP [dm3] X_4549307_SNP [dm6]	T	C	1.821e^-4	0.775	SYNONYMOUS_CODING CG15912 UPSTREAM Usf DOWNSTREAM CG11436 INTRON CR32773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	3831143	2L_3831143_SNP [dm3] 2L_3831143_SNP [dm6]	C	A	1.824e^-4	0.775	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26418413	3R_26418413_SNP [dm3] 3R_30592691_SNP [dm6]	C	T	1.824e^-4	0.775	DOWNSTREAM CG2246 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8636367	3L_8636367_SNP [dm3] 3L_8643267_SNP [dm6]	G	A	1.825e^-4	0.775	SYNONYMOUS_CODING Cpr66D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	13411532	3R_13411532_SNP [dm3] 3R_17585810_SNP [dm6]	A	G	1.827e^-4	0.775	INTERGENIC
2L	4786820	2L_4786820_SNP [dm3] 2L_4786820_SNP [dm6]	T	C	1.837e^-4	0.777	INTRON CG15630
X	9884627	X_9884627_SNP [dm3] X_9990594_SNP [dm6]	C	T	1.843e^-4	0.777	INTRON CG32694
2R	7403489	2R_7403489_SNP [dm3] 2R_11515984_SNP [dm6]	A	C	1.849e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	7788745	2L_7788745_SNP [dm3] 2L_7788745_SNP [dm6]	T	C	1.856e^-4	0.777	INTRON CG7149
3R	21022994	3R_21022994_SNP [dm3] 3R_25197272_SNP [dm6]	G	C	1.856e^-4	0.777	DOWNSTREAM CG13653 & 1 other INTERGENIC
2L	7792782	2L_7792782_SNP [dm3] 2L_7792782_SNP [dm6]	T	G	1.858e^-4	0.777	SYNONYMOUS_CODING LKR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26249008	3R_26249008_SNP [dm3] 3R_30423286_SNP [dm6]	G	T	1.864e^-4	0.777	UTR_3_PRIME CG15535 UPSTREAM CG2217 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18934885	2L_18934885_SNP [dm3] 2L_18934885_SNP [dm6]	A	G	1.865e^-4	0.777	INTRON ssp3	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	4771471	2L_4771471_SNP [dm3] 2L_4771471_SNP [dm6]	G	T	1.868e^-4	0.777	INTRON CG15630
2L	18584355	2L_18584355_SNP [dm3] 2L_18584355_SNP [dm6]	G	A	1.882e^-4	0.78	INTRON Pde11
2L	15932458	2L_15932458_SNP [dm3] 2L_15932458_SNP [dm6]	T	C	1.884e^-4	0.78	INTRON beat-Ib
2L	12529413	2L_12529413_SNP [dm3] 2L_12529413_SNP [dm6]	G	A	1.891e^-4	0.781	INTRON bun	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3383280	3L_3383280_SNP [dm3] 3L_3383280_SNP [dm6]	G	A	1.900e^-4	0.783	INTERGENIC
2R	10608370	2R_10608370_SNP [dm3] 2R_14720865_SNP [dm6]	T	A	1.903e^-4	0.783	INTERGENIC
2L	15013372	2L_15013372_SNP [dm3] 2L_15013372_SNP [dm6]	T	C	1.913e^-4	0.784	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	20341014	3R_20341014_DEL [dm3] 3R_24515292_DEL [dm6]	ACTGTAA	A	1.915e^-4	0.784	UTR_5_PRIME CG13617 UPSTREAM CG13617 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14015972	X_14015972_SNP [dm3] X_14121939_SNP [dm6]	T	C	1.928e^-4	0.785	INTERGENIC
2L	5153631	2L_5153631_SNP [dm3] 2L_5153631_SNP [dm6]	A	G	1.935e^-4	0.785	INTRON Msp300
3R	9169661	3R_9169661_SNP [dm3] 3R_13343939_SNP [dm6]	A	T	1.936e^-4	0.785	INTRON PK2-R1
2L	15818270	2L_15818270_SNP [dm3] 2L_15818270_SNP [dm6]	A	C	1.938e^-4	0.785	INTERGENIC
3R	9749275	3R_9749275_SNP [dm3] 3R_13923553_SNP [dm6]	G	A	1.939e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10907967	2L_10907967_SNP [dm3] 2L_10907967_SNP [dm6]	A	C	1.942e^-4	0.785	INTRON CG7309
2L	10128522	2L_10128522_DEL [dm3] 2L_10128522_DEL [dm6]	CCGTTCAATGCCAAACC...	C	1.961e^-4	0.789	INTRON CG44153
2R	8406017	2R_8406017_SNP [dm3] 2R_12518512_SNP [dm6]	C	G	1.963e^-4	0.789	NON_SYNONYMOUS_CODING CG8818 UPSTREAM CG8569	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10838982	3R_10838982_DEL [dm3] 3R_15013260_DEL [dm6]	CC	C	1.965e^-4	0.789	INTERGENIC
2L	7781859	2L_7781859_SNP [dm3] 2L_7781859_SNP [dm6]	G	T	1.968e^-4	0.789	DOWNSTREAM Uro INTRON CG7164	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9545597	3L_9545597_SNP [dm3] 3L_9552497_SNP [dm6]	C	A	1.978e^-4	0.791	INTRON CG42673
3R	15163222	3R_15163222_INS [dm3] 3R_19337500_INS [dm6]	A	AA	1.987e^-4	0.791	INTERGENIC	TF binding site mE1_TFBS_cad
3R	27229855	3R_27229855_SNP [dm3] 3R_31404133_SNP [dm6]	T	C	1.989e^-4	0.791	SYNONYMOUS_CODING CG11337	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	15877732	2L_15877732_SNP [dm3] 2L_15877732_SNP [dm6]	T	C	1.990e^-4	0.791	INTRON CG7653
2L	7781857	2L_7781857_SNP [dm3] 2L_7781857_SNP [dm6]	C	T	2.008e^-4	0.795	DOWNSTREAM Uro INTRON CG7164	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6671192	2L_6671192_DEL [dm3] 2L_6671192_DEL [dm6]	AA	A	2.008e^-4	0.795	UTR_3_PRIME Spn27A DOWNSTREAM Spn27A INTRON cup & 1 other
3L	20311205	3L_20311205_SNP [dm3] 3L_20318105_SNP [dm6]	T	A	2.014e^-4	0.795	UPSTREAM CR43875 INTRON Spn77Ba
2R	17678967	2R_17678967_SNP [dm3] 2R_21791462_SNP [dm6]	A	C	2.019e^-4	0.796	SYNONYMOUS_CODING lox2
3L	10349777	3L_10349777_SNP [dm3] 3L_10356677_SNP [dm6]	T	G	2.041e^-4	0.799	INTRON CR44327
X	21214426	X_21214426_SNP [dm3] X_21343399_SNP [dm6]	G	A	2.044e^-4	0.799	INTRON fliI	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3450212	2R_3450212_SNP [dm3] 2R_7562707_SNP [dm6]	A	T	2.046e^-4	0.799	UTR_3_PRIME Corin
3R	16772901	3R_16772901_SNP [dm3] 3R_20947179_SNP [dm6]	G	A	2.051e^-4	0.799	INTERGENIC
3R	11003635	3R_11003635_SNP [dm3] 3R_15177913_SNP [dm6]	G	A	2.052e^-4	0.799	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
2L	11909882	2L_11909882_SNP [dm3] 2L_11909882_SNP [dm6]	T	A	2.056e^-4	0.799	INTRON Pde1c
3L	9304312	3L_9304312_SNP [dm3] 3L_9311212_SNP [dm6]	T	G	2.058e^-4	0.799	INTERGENIC
3L	17404459	3L_17404459_SNP [dm3] 3L_17411359_SNP [dm6]	A	G	2.072e^-4	0.8	INTRON blot	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	19537711	X_19537711_INS [dm3] X_19643678_INS [dm6]	G	GGG	2.076e^-4	0.8	UPSTREAM Sec61gamma & 1 other DOWNSTREAM Arp10 INTRON Sec61gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7651771	2L_7651771_SNP [dm3] 2L_7651771_SNP [dm6]	G	A	2.080e^-4	0.8	INTRON Slob
3L	8197460	3L_8197460_SNP [dm3] 3L_8204360_SNP [dm6]	A	T	2.094e^-4	0.8	INTERGENIC
X	21062249	X_21062249_SNP [dm3] X_21191222_SNP [dm6]	C	T	2.096e^-4	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	11088233	3R_11088233_SNP [dm3] 3R_15262511_SNP [dm6]	T	G	2.099e^-4	0.8	INTRON eIF-2gamma & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	16926797	3R_16926797_SNP [dm3] 3R_21101075_SNP [dm6]	A	G	2.100e^-4	0.8	NON_SYNONYMOUS_CODING CG7044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	2271651	3L_2271651_SNP [dm3] 3L_2271651_SNP [dm6]	G	A	2.101e^-4	0.8	INTRON yellow-g
2L	7788794	2L_7788794_SNP [dm3] 2L_7788794_SNP [dm6]	G	C	2.102e^-4	0.8	INTRON CG7149
X	2244802	X_2244802_INS [dm3] X_2350769_INS [dm6]	A	AA	2.107e^-4	0.8	UPSTREAM ptr INTRON ptr
X	19665886	X_19665886_SNP [dm3] X_19771853_SNP [dm6]	A	G	2.107e^-4	0.8	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2251662	2L_2251662_SNP [dm3] 2L_2251662_SNP [dm6]	A	G	2.133e^-4	0.807	SYNONYMOUS_CODING CG17239 UPSTREAM Ser12	TF binding site mE1_TFBS_cad
3R	9565970	3R_9565970_SNP [dm3] 3R_13740248_SNP [dm6]	G	A	2.139e^-4	0.807	INTRON CG34383
3L	10948604	3L_10948604_SNP [dm3] 3L_10955504_SNP [dm6]	C	T	2.149e^-4	0.807	INTERGENIC
2L	17528066	2L_17528066_SNP [dm3] 2L_17528066_SNP [dm6]	A	G	2.150e^-4	0.807	SYNONYMOUS_CODING CG15144
2R	12060828	2R_12060828_SNP [dm3] 2R_16173323_SNP [dm6]	T	C	2.154e^-4	0.807	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2L	1622291	2L_1622291_SNP [dm3] 2L_1622291_SNP [dm6]	A	G	2.156e^-4	0.807	EXON CR44603
3L	4439008	3L_4439008_SNP [dm3] 3L_4439008_SNP [dm6]	G	A	2.158e^-4	0.807	DOWNSTREAM CG15021 INTERGENIC
2R	7294179	2R_7294179_SNP [dm3] 2R_11406674_SNP [dm6]	C	T	2.169e^-4	0.807	SYNONYMOUS_CODING CG7759
3L	3385163	3L_3385163_SNP [dm3] 3L_3385163_SNP [dm6]	C	T	2.172e^-4	0.807	INTERGENIC
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	2.174e^-4	0.807	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
3R	27229831	3R_27229831_SNP [dm3] 3R_31404109_SNP [dm6]	G	A	2.176e^-4	0.807	SYNONYMOUS_CODING CG11337	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	12378030	2R_12378030_SNP [dm3] 2R_16490525_SNP [dm6]	G	C	2.182e^-4	0.807	UPSTREAM S-Lap8 INTERGENIC
3R	13961826	3R_13961826_SNP [dm3] 3R_18136104_SNP [dm6]	G	A	2.186e^-4	0.807	DOWNSTREAM sr INTERGENIC
3L	5087971	3L_5087971_SNP [dm3] 3L_5087971_SNP [dm6]	C	T	2.187e^-4	0.807	INTERGENIC
3L	3380249	3L_3380249_SNP [dm3] 3L_3380249_SNP [dm6]	G	C	2.192e^-4	0.807	DOWNSTREAM CG12014 INTERGENIC
2L	8514798	2L_8514798_SNP [dm3] 2L_8514798_SNP [dm6]	C	T	2.200e^-4	0.807	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15932452	2L_15932452_SNP [dm3] 2L_15932452_SNP [dm6]	A	G	2.202e^-4	0.807	INTRON beat-Ib
3R	26547243	3R_26547243_SNP [dm3] 3R_30721521_SNP [dm6]	T	G	2.203e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16046325	3L_16046325_SNP [dm3] 3L_16053225_SNP [dm6]	C	T	2.206e^-4	0.807	UTR_5_PRIME Mbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13165697	3R_13165697_SNP [dm3] 3R_17339975_SNP [dm6]	G	A	2.218e^-4	0.81	INTRON beat-IIa
X	7940066	X_7940066_SNP [dm3] X_8046033_SNP [dm6]	T	C	2.230e^-4	0.812	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
2R	11043911	2R_11043911_SNP [dm3] 2R_15156406_SNP [dm6]	T	G	2.233e^-4	0.812	INTRON igl
3L	5506178	3L_5506178_SNP [dm3] 3L_5513078_SNP [dm6]	T	G	2.244e^-4	0.813	UTR_3_PRIME Lkr
3L	5506197	3L_5506197_SNP [dm3] 3L_5513097_SNP [dm6]	A	T	2.244e^-4	0.813	UTR_3_PRIME Lkr
3R	26454338	3R_26454338_SNP [dm3] 3R_30628616_SNP [dm6]	T	C	2.258e^-4	0.815	SYNONYMOUS_CODING CG2267
2R	16550381	2R_16550381_SNP [dm3] 2R_20662876_SNP [dm6]	G	T	2.258e^-4	0.815	UTR_3_PRIME Fem-1 DOWNSTREAM CG13437	TF binding site mE1_TFBS_cad
3R	9567146	3R_9567146_SNP [dm3] 3R_13741424_SNP [dm6]	C	T	2.264e^-4	0.815	INTRON CG34383
3R	11085815	3R_11085815_SNP [dm3] 3R_15260093_SNP [dm6]	A	C	2.276e^-4	0.818	UTR_3_PRIME Su_var_3-9 INTRON eIF-2gamma
2R	8613762	2R_8613762_SNP [dm3] 2R_12726257_SNP [dm6]	A	T	2.280e^-4	0.818	INTRON CG42663
3R	13291841	3R_13291841_SNP [dm3] 3R_17466119_SNP [dm6]	C	G	2.292e^-4	0.819	INTERGENIC
3L	10478413	3L_10478413_SNP [dm3] 3L_10485313_SNP [dm6]	T	C	2.293e^-4	0.819	INTRON A2bp1
X	19985944	X_19985944_SNP [dm3] X_20091911_SNP [dm6]	T	A	2.300e^-4	0.819	NON_SYNONYMOUS_CODING fd19B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1413146	2L_1413146_SNP [dm3] 2L_1413146_SNP [dm6]	A	G	2.303e^-4	0.819	INTRON lea	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19665827	X_19665827_SNP [dm3] X_19771794_SNP [dm6]	G	A	2.305e^-4	0.819	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7590162	2L_7590162_SNP [dm3] 2L_7590162_SNP [dm6]	G	A	2.311e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	4432196	2R_4432196_SNP [dm3] 2R_8544691_SNP [dm6]	T	C	2.324e^-4	0.821	INTERGENIC
2R	4432233	2R_4432233_SNP [dm3] 2R_8544728_SNP [dm6]	C	T	2.324e^-4	0.821	INTERGENIC
2L	7787074	2L_7787074_SNP [dm3] 2L_7787074_SNP [dm6]	T	C	2.332e^-4	0.822	INTRON CG7149
2R	16024073	2R_16024073_SNP [dm3] 2R_20136568_SNP [dm6]	T	G	2.353e^-4	0.826	UPSTREAM CR44635 DOWNSTREAM CR44634 INTERGENIC
3R	14113278	3R_14113278_SNP [dm3] 3R_18287556_SNP [dm6]	G	A	2.354e^-4	0.826	DOWNSTREAM CG8064 INTRON CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9775534	3L_9775534_DEL [dm3] 3L_9782434_DEL [dm6]	CTGTT	A	2.360e^-4	0.826	INTRON CG8177
3L	5100941	3L_5100941_SNP [dm3] 3L_5100941_SNP [dm6]	T	C	2.361e^-4	0.826	INTERGENIC
2L	8509112	2L_8509112_SNP [dm3] 2L_8509112_SNP [dm6]	G	A	2.365e^-4	0.826	UTR_3_PRIME CG13096 DOWNSTREAM CG13096
2R	11911230	2R_11911230_SNP [dm3] 2R_16023725_SNP [dm6]	T	A	2.376e^-4	0.826	DOWNSTREAM casp INTRON CG8399
2L	3589177	2L_3589177_SNP [dm3] 2L_3589177_SNP [dm6]	A	G	2.377e^-4	0.826	EXON CR43823	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3L	8821791	3L_8821791_SNP [dm3] 3L_8828691_SNP [dm6]	A	G	2.381e^-4	0.826	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26611990	3R_26611990_SNP [dm3] 3R_30786268_SNP [dm6]	T	C	2.389e^-4	0.826	NON_SYNONYMOUS_CODING zfh1 UTR_3_PRIME zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2271647	3L_2271647_SNP [dm3] 3L_2271647_SNP [dm6]	T	C	2.398e^-4	0.826	INTRON yellow-g
3L	14394668	3L_14394668_SNP [dm3] 3L_14401568_SNP [dm6]	G	A	2.419e^-4	0.826	SYNONYMOUS_CODING CG3868
X	5451735	X_5451735_SNP [dm3] X_5557702_SNP [dm6]	C	T	2.424e^-4	0.826	INTRON Vsx2
X	5361115	X_5361115_SNP [dm3] X_5467082_SNP [dm6]	A	G	2.436e^-4	0.826	INTRON SPR
2R	11045158	2R_11045158_SNP [dm3] 2R_15157653_SNP [dm6]	A	G	2.442e^-4	0.826	INTRON igl
3L	1370138	3L_1370138_SNP [dm3] 3L_1370138_SNP [dm6]	A	T	2.444e^-4	0.826	UPSTREAM ru INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12953880	2R_12953880_INS [dm3] 2R_17066375_INS [dm6]	T	TGT	2.450e^-4	0.826	UTR_3_PRIME CG6967 & 1 other DOWNSTREAM CG30460
3L	3383449	3L_3383449_SNP [dm3] 3L_3383449_SNP [dm6]	C	T	2.456e^-4	0.826	INTERGENIC
3L	3380858	3L_3380858_SNP [dm3] 3L_3380858_SNP [dm6]	C	A	2.458e^-4	0.826	DOWNSTREAM CG12014 INTERGENIC
2L	7775220	2L_7775220_SNP [dm3] 2L_7775220_SNP [dm6]	G	A	2.458e^-4	0.826	DOWNSTREAM CG7179 & 1 other INTERGENIC
3L	8634216	3L_8634216_SNP [dm3] 3L_8641116_SNP [dm6]	T	G	2.462e^-4	0.826	INTRON Cpr66D
3L	17404214	3L_17404214_SNP [dm3] 3L_17411114_SNP [dm6]	T	C	2.465e^-4	0.826	INTRON blot	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
3L	5085915	3L_5085915_SNP [dm3] 3L_5085915_SNP [dm6]	T	A	2.491e^-4	0.826	INTERGENIC
2L	6976881	2L_6976881_SNP [dm3] 2L_6976881_SNP [dm6]	A	G	2.498e^-4	0.826	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	17423099	3L_17423099_SNP [dm3] 3L_17429999_SNP [dm6]	C	T	2.500e^-4	0.826	SYNONYMOUS_CODING CG32174 UTR_3_PRIME frc
2L	2251578	2L_2251578_SNP [dm3] 2L_2251578_SNP [dm6]	A	T	2.529e^-4	0.826	UTR_3_PRIME CG17239 UPSTREAM Ser12	TF binding site mE1_TFBS_cad
2L	4893383	2L_4893383_SNP [dm3] 2L_4893383_SNP [dm6]	T	G	2.531e^-4	0.826	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9305008	3L_9305008_INS [dm3] 3L_9311908_INS [dm6]	C	GAGTTTTGGCA...	2.537e^-4	0.826	INTERGENIC
2R	9409870	2R_9409870_SNP [dm3] 2R_13522365_SNP [dm6]	G	T	2.540e^-4	0.826	NON_SYNONYMOUS_CODING CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14863089	3L_14863089_SNP [dm3] 3L_14869989_SNP [dm6]	T	A	2.540e^-4	0.826	INTRON CG17839
3R	11094665	3R_11094665_SNP [dm3] 3R_15268943_SNP [dm6]	G	A	2.544e^-4	0.826	NON_SYNONYMOUS_CODING Zip88E UPSTREAM CG14864	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	7437891	3R_7437891_SNP [dm3] 3R_11612169_SNP [dm6]	G	T	2.544e^-4	0.826	INTRON Jupiter
3L	7852896	3L_7852896_INS [dm3] 3L_7859796_INS [dm6]	A	AA	2.546e^-4	0.826	INTRON Pdp1
2R	16353938	2R_16353938_SNP [dm3] 2R_20466433_SNP [dm6]	T	A	2.547e^-4	0.826	INTRON CG12484
2R	20022896	2R_20022896_SNP [dm3] 2R_24135373_SNP [dm6]	A	T	2.554e^-4	0.826	UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8 INTRON CG4065
2R	7294182	2R_7294182_SNP [dm3] 2R_11406677_SNP [dm6]	A	G	2.558e^-4	0.826	SYNONYMOUS_CODING CG7759
2L	18319765	2L_18319765_SNP [dm3] 2L_18319765_SNP [dm6]	C	A	2.561e^-4	0.826	UPSTREAM Fas3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9559081	3L_9559081_SNP [dm3] 3L_9565981_SNP [dm6]	T	G	2.563e^-4	0.826	INTRON CG42673
2R	12378027	2R_12378027_SNP [dm3] 2R_16490522_SNP [dm6]	T	C	2.564e^-4	0.826	UPSTREAM S-Lap8 INTERGENIC
3L	7777882	3L_7777882_SNP [dm3] 3L_7784782_SNP [dm6]	G	A	2.568e^-4	0.826	INTRON CG32369
3L	3381167	3L_3381167_SNP [dm3] 3L_3381167_SNP [dm6]	T	A	2.575e^-4	0.826	INTERGENIC
2L	14759173	2L_14759173_SNP [dm3] 2L_14759173_SNP [dm6]	T	C	2.577e^-4	0.826	INTERGENIC
2R	5232342	2R_5232342_SNP [dm3] 2R_9344837_SNP [dm6]	G	T	2.577e^-4	0.826	UPSTREAM Or45a INTRON CG13954 & 1 other
2R	11827883	2R_11827883_DEL [dm3] 2R_15940378_DEL [dm6]	GTAAAGTA	G	2.577e^-4	0.826	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5118282	3L_5118282_SNP [dm3] 3L_5125182_SNP [dm6]	C	G	2.577e^-4	0.826	INTERGENIC
2L	10455667	2L_10455667_SNP [dm3] 2L_10455667_SNP [dm6]	C	G	2.583e^-4	0.826	SYNONYMOUS_CODING CG5322	TF binding site mE1_TFBS_sens
2R	10456008	2R_10456008_SNP [dm3] 2R_14568503_SNP [dm6]	A	T	2.583e^-4	0.826	INTRON ttv
X	15327844	X_15327844_SNP [dm3] X_15433811_SNP [dm6]	T	C	2.587e^-4	0.826	INTRON Cngl
2R	7658358	2R_7658358_SNP [dm3] 2R_11770853_SNP [dm6]	C	T	2.587e^-4	0.826	INTRON ths
2L	15817863	2L_15817863_SNP [dm3] 2L_15817863_SNP [dm6]	C	T	2.589e^-4	0.826	INTERGENIC
3L	3918211	3L_3918211_SNP [dm3] 3L_3918211_SNP [dm6]	A	C	2.592e^-4	0.826	INTRON Eip63F-1
2R	10794805	2R_10794805_SNP [dm3] 2R_14907300_SNP [dm6]	T	G	2.595e^-4	0.826	UTR_5_PRIME CG10249 INTRON CG10249
2L	11378876	2L_11378876_SNP [dm3] 2L_11378876_SNP [dm6]	C	T	2.602e^-4	0.826	INTERGENIC	regulatory region REDfly_CRMs
3R	20865622	3R_20865622_SNP [dm3] 3R_25039900_SNP [dm6]	A	G	2.609e^-4	0.826	NON_SYNONYMOUS_CODING bai UPSTREAM CG6422 DOWNSTREAM 5PtaseI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	21277821	3R_21277821_SNP [dm3] 3R_25452099_SNP [dm6]	T	A	2.626e^-4	0.826	INTRON Fur1
2L	1963441	2L_1963441_SNP [dm3] 2L_1963441_SNP [dm6]	G	A	2.627e^-4	0.826	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	13098869	2R_13098869_SNP [dm3] 2R_17211364_SNP [dm6]	G	A	2.628e^-4	0.826	INTERGENIC
2L	6581165	2L_6581165_SNP [dm3] 2L_6581165_SNP [dm6]	A	T	2.632e^-4	0.826	INTRON CG11319
2L	8523537	2L_8523537_SNP [dm3] 2L_8523537_SNP [dm6]	C	A	2.632e^-4	0.826	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	6876310	2L_6876310_SNP [dm3] 2L_6876310_SNP [dm6]	C	A	2.648e^-4	0.826	INTRON Nlg2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5498405	2R_5498405_DEL [dm3] 2R_9610900_DEL [dm6]	CGGAGTGAGCTC...	C	2.649e^-4	0.826	UPSTREAM CG12926 DOWNSTREAM Mmp2 EXON CR44069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9685343	3R_9685343_SNP [dm3] 3R_13859621_SNP [dm6]	C	T	2.660e^-4	0.826	INTERGENIC
2R	7362125	2R_7362125_SNP [dm3] 2R_11474620_SNP [dm6]	G	A	2.660e^-4	0.826	UTR_5_PRIME inv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	14775982	2L_14775982_SNP [dm3] 2L_14775982_SNP [dm6]	A	C	2.665e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	19530838	3L_19530838_SNP [dm3] 3L_19537738_SNP [dm6]	A	G	2.666e^-4	0.826	DOWNSTREAM CG9279 INTRON Cpr76Bd
3R	11098481	3R_11098481_SNP [dm3] 3R_15272759_SNP [dm6]	C	T	2.669e^-4	0.826	SYNONYMOUS_CODING Cp190	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
3R	9730209	3R_9730209_SNP [dm3] 3R_13904487_SNP [dm6]	C	G	2.673e^-4	0.826	UTR_3_PRIME ems
2L	8509953	2L_8509953_SNP [dm3] 2L_8509953_SNP [dm6]	G	A	2.689e^-4	0.826	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7362281	2R_7362281_SNP [dm3] 2R_11474776_SNP [dm6]	A	T	2.693e^-4	0.826	UPSTREAM inv INTRON inv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26137020	3R_26137020_SNP [dm3] 3R_30311298_SNP [dm6]	C	T	2.693e^-4	0.826	INTRON hdc
2L	7781964	2L_7781964_SNP [dm3] 2L_7781964_SNP [dm6]	A	G	2.695e^-4	0.826	SYNONYMOUS_CODING CG7164 UPSTREAM CG7154 DOWNSTREAM Uro	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15801702	2L_15801702_DEL [dm3] 2L_15801702_DEL [dm6]	CCCACATGCTGGCCAGCTAA...	C	2.700e^-4	0.826	INTERGENIC
2R	11911376	2R_11911376_SNP [dm3] 2R_16023871_SNP [dm6]	A	G	2.702e^-4	0.826	DOWNSTREAM casp INTRON CG8399
3L	5506108	3L_5506108_SNP [dm3] 3L_5513008_SNP [dm6]	A	G	2.706e^-4	0.826	UTR_3_PRIME Lkr
3L	11862232	3L_11862232_SNP [dm3] 3L_11869132_SNP [dm6]	G	A	2.707e^-4	0.826	INTRON CG44837
2L	1625979	2L_1625979_SNP [dm3] 2L_1625979_SNP [dm6]	G	C	2.710e^-4	0.826	EXON CR44603
3R	20947800	3R_20947800_SNP [dm3] 3R_25122078_SNP [dm6]	C	A	2.722e^-4	0.826	INTRON CG31108 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	13925196	2R_13925196_SNP [dm3] 2R_18037691_SNP [dm6]	G	T	2.739e^-4	0.826	INTERGENIC
3R	25722625	3R_25722625_SNP [dm3] 3R_29896903_SNP [dm6]	G	T	2.754e^-4	0.826	SYNONYMOUS_CODING CG31038 INTRON CG31038	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18012780	3L_18012780_SNP [dm3] 3L_18019680_SNP [dm6]	G	A	2.774e^-4	0.826	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10015566	2L_10015566_SNP [dm3] 2L_10015566_SNP [dm6]	T	C	2.778e^-4	0.826	NON_SYNONYMOUS_CODING CG13131
3L	8634210	3L_8634210_SNP [dm3] 3L_8641110_SNP [dm6]	T	C	2.779e^-4	0.826	INTRON Cpr66D
2L	8511667	2L_8511667_SNP [dm3] 2L_8511667_SNP [dm6]	C	G	2.782e^-4	0.826	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23718259	3R_23718259_SNP [dm3] 3R_27892537_SNP [dm6]	T	G	2.790e^-4	0.826	INTRON CG34353
3R	14208808	3R_14208808_SNP [dm3] 3R_18383086_SNP [dm6]	T	C	2.790e^-4	0.826	SYNONYMOUS_CODING CG14309	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	2.804e^-4	0.826	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6940046	2L_6940046_SNP [dm3] 2L_6940046_SNP [dm6]	G	T	2.812e^-4	0.826	INTRON CG18304	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	4987378	3R_4987378_SNP [dm3] 3R_9161656_SNP [dm6]	A	T	2.823e^-4	0.826	INTRON pum
2R	16917375	2R_16917375_SNP [dm3] 2R_21029870_SNP [dm6]	C	A	2.824e^-4	0.826	EXON CR45148
3R	20219519	3R_20219519_SNP [dm3] 3R_24393797_SNP [dm6]	A	T	2.825e^-4	0.826	DOWNSTREAM nAChRalpha1 & 1 other INTERGENIC
3R	25170823	3R_25170823_SNP [dm3] 3R_29345101_SNP [dm6]	A	C	2.831e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6325352	2L_6325352_SNP [dm3] 2L_6325352_SNP [dm6]	A	C	2.832e^-4	0.826	SPLICE_SITE_REGION PDZ-GEF INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2720598	3L_2720598_SNP [dm3] 3L_2720598_SNP [dm6]	G	T	2.835e^-4	0.826	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11507676	2R_11507676_SNP [dm3] 2R_15620171_SNP [dm6]	T	C	2.845e^-4	0.826	INTRON CG42524
2L	15883182	2L_15883182_SNP [dm3] 2L_15883182_SNP [dm6]	T	A	2.846e^-4	0.826	UTR_5_PRIME CG44475
2L	1582939	2L_1582939_DEL [dm3] 2L_1582939_DEL [dm6]	AAGTCA	A	2.856e^-4	0.826	INTRON haf
3R	27035535	3R_27035535_SNP [dm3] 3R_31209813_SNP [dm6]	T	A	2.866e^-4	0.826	INTRON chp
2R	4190397	2R_4190397_SNP [dm3] 2R_8302892_SNP [dm6]	T	C	2.872e^-4	0.826	INTERGENIC
3R	10062622	3R_10062622_SNP [dm3] 3R_14236900_SNP [dm6]	C	T	2.888e^-4	0.826	NON_SYNONYMOUS_CODING CG43291
2L	7787558	2L_7787558_SNP [dm3] 2L_7787558_SNP [dm6]	G	A	2.888e^-4	0.826	SPLICE_SITE_REGION CG7149 INTRON CG7149
3L	8731213	3L_8731213_SNP [dm3] 3L_8738113_SNP [dm6]	T	G	2.892e^-4	0.826	INTRON Prm	TF binding site mE1_TFBS_cad
X	7959843	X_7959843_SNP [dm3] X_8065810_SNP [dm6]	T	C	2.899e^-4	0.826	INTRON mys
2R	3477474	2R_3477474_SNP [dm3] 2R_7589969_SNP [dm6]	G	T	2.900e^-4	0.826	UTR_5_PRIME CG1360 UPSTREAM scra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4957103	2L_4957103_SNP [dm3] 2L_4957103_SNP [dm6]	G	A	2.905e^-4	0.826	SYNONYMOUS_CODING Marcal1
2R	10114578	2R_10114578_SNP [dm3] 2R_14227073_SNP [dm6]	G	T	2.910e^-4	0.826	INTRON CG8468
3R	6574639	3R_6574639_SNP [dm3] 3R_10748917_SNP [dm6]	C	T	2.926e^-4	0.826	INTRON TkR86C
2R	15449586	2R_15449586_SNP [dm3] 2R_19562081_SNP [dm6]	G	C	2.933e^-4	0.826	INTRON sm
3L	9577786	3L_9577786_SNP [dm3] 3L_9584686_SNP [dm6]	A	G	2.934e^-4	0.826	INTRON CG42673
2R	5232331	2R_5232331_SNP [dm3] 2R_9344826_SNP [dm6]	G	T	2.937e^-4	0.826	UPSTREAM Or45a INTRON CG13954 & 1 other
X	3783427	X_3783427_SNP [dm3] X_3889394_SNP [dm6]	C	T	2.940e^-4	0.826	SYNONYMOUS_CODING CG15239	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17405450	3L_17405450_SNP [dm3] 3L_17412350_SNP [dm6]	T	A	2.951e^-4	0.826	INTRON blot	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	14376393	2L_14376393_SNP [dm3] 2L_14376393_SNP [dm6]	T	A	2.957e^-4	0.826	INTERGENIC
2L	9374356	2L_9374356_INS [dm3] 2L_9374356_INS [dm6]	G	AA	2.961e^-4	0.826	DOWNSTREAM CR43865 INTRON Shawl
2L	11170834	2L_11170834_SNP [dm3] 2L_11170834_SNP [dm6]	T	A	2.962e^-4	0.826	UTR_5_PRIME Ca-beta DOWNSTREAM Vm32E INTRON Ca-beta	regulatory region REDfly_CRMs
2R	5006361	2R_5006361_SNP [dm3] 2R_9118856_SNP [dm6]	A	T	2.967e^-4	0.826	INTRON Su_var_2-10	TF binding site mE1_TFBS_cad
3R	13549155	3R_13549155_SNP [dm3] 3R_17723433_SNP [dm6]	T	C	2.973e^-4	0.826	DOWNSTREAM Pxt & 1 other INTERGENIC
2L	15817437	2L_15817437_SNP [dm3] 2L_15817437_SNP [dm6]	G	A	2.974e^-4	0.826	INTERGENIC
2R	13098962	2R_13098962_SNP [dm3] 2R_17211457_SNP [dm6]	T	A	2.977e^-4	0.826	INTERGENIC
2R	11510117	2R_11510117_SNP [dm3] 2R_15622612_SNP [dm6]	C	A	2.991e^-4	0.826	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7767209	3L_7767209_SNP [dm3] 3L_7774109_SNP [dm6]	G	A	2.998e^-4	0.826	INTRON Clk	regulatory region REDfly_CRMs
X	2244799	X_2244799_SNP [dm3] X_2350766_SNP [dm6]	C	A	3.011e^-4	0.826	UPSTREAM ptr INTRON ptr
2L	4098376	2L_4098376_SNP [dm3] 2L_4098376_SNP [dm6]	G	A	3.013e^-4	0.826	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21144859	X_21144859_SNP [dm3] X_21273832_SNP [dm6]	C	T	3.021e^-4	0.826	INTRON CG32521
X	7191534	X_7191534_SNP [dm3] X_7297501_SNP [dm6]	T	C	3.023e^-4	0.826	INTRON CR44357 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7734600	3L_7734600_SNP [dm3] 3L_7741500_SNP [dm6]	T	C	3.034e^-4	0.826	INTRON CG32373 & 1 other
3L	3384758	3L_3384758_SNP [dm3] 3L_3384758_SNP [dm6]	T	A	3.040e^-4	0.826	INTERGENIC
3L	4367730	3L_4367730_SNP [dm3] 3L_4367730_SNP [dm6]	A	G	3.040e^-4	0.826	UTR_3_PRIME DopEcR UPSTREAM CG11342	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16917298	2R_16917298_SNP [dm3] 2R_21029793_SNP [dm6]	G	C	3.048e^-4	0.826	INTRON CR45148
2L	438326	2L_438326_SNP [dm3] 2L_438326_SNP [dm6]	T	A	3.049e^-4	0.826	INTRON ex
2L	7741442	2L_7741442_SNP [dm3] 2L_7741442_SNP [dm6]	T	C	3.052e^-4	0.826	INTRON Acp1
2R	18449650	2R_18449650_SNP [dm3] 2R_22562145_SNP [dm6]	G	A	3.066e^-4	0.826	UPSTREAM CG11362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14119433	3R_14119433_SNP [dm3] 3R_18293711_SNP [dm6]	G	A	3.068e^-4	0.826	INTRON l_3_05822
2R	6172676	2R_6172676_SNP [dm3] 2R_10285171_SNP [dm6]	A	G	3.083e^-4	0.826	INTRON CAP
2L	11325390	2L_11325390_SNP [dm3] 2L_11325390_SNP [dm6]	G	A	3.086e^-4	0.826	INTERGENIC
3L	752144	3L_752144_SNP [dm3] 3L_752144_SNP [dm6]	A	G	3.088e^-4	0.826	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2L	2209272	2L_2209272_SNP [dm3] 2L_2209272_SNP [dm6]	A	G	3.089e^-4	0.826	UPSTREAM CG33124 DOWNSTREAM CG15385 INTERGENIC
2R	12031392	2R_12031392_SNP [dm3] 2R_16143887_SNP [dm6]	T	C	3.092e^-4	0.826	SYNONYMOUS_CODING Aats-cys DOWNSTREAM CG30094	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10986712	2L_10986712_SNP [dm3] 2L_10986712_SNP [dm6]	T	C	3.093e^-4	0.826	INTRON piwi	transposable element FlyBase
3R	11098768	3R_11098768_SNP [dm3] 3R_15273046_SNP [dm6]	G	T	3.095e^-4	0.826	INTRON Cp190
2R	20210045	2R_20210045_SNP [dm3] 2R_24322522_SNP [dm6]	G	A	3.095e^-4	0.826	INTERGENIC
X	1842535	X_1842535_INS [dm3] X_1948502_INS [dm6]	G	GACA	3.098e^-4	0.826	INTRON Hr4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2L	8509208	2L_8509208_SNP [dm3] 2L_8509208_SNP [dm6]	A	G	3.101e^-4	0.826	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
3R	9730422	3R_9730422_SNP [dm3] 3R_13904700_SNP [dm6]	A	G	3.101e^-4	0.826	DOWNSTREAM ems INTERGENIC
2L	15013692	2L_15013692_SNP [dm3] 2L_15013692_SNP [dm6]	G	C	3.103e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18337632	3R_18337632_SNP [dm3] 3R_22511910_SNP [dm6]	T	C	3.104e^-4	0.826	INTRON Octbeta1R	regulatory region REDfly_CRMs
X	21214407	X_21214407_SNP [dm3] X_21343380_SNP [dm6]	G	A	3.107e^-4	0.826	INTRON fliI	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16772643	3R_16772643_SNP [dm3] 3R_20946921_SNP [dm6]	T	A	3.109e^-4	0.826	INTERGENIC
X	13720800	X_13720800_SNP [dm3] X_13826767_SNP [dm6]	G	A	3.111e^-4	0.826	DOWNSTREAM Nup93-1 INTRON jub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22869046	3R_22869046_SNP [dm3] 3R_27043324_SNP [dm6]	T	C	3.112e^-4	0.826	INTRON RYa-R
2R	11066771	2R_11066771_SNP [dm3] 2R_15179266_SNP [dm6]	G	C	3.116e^-4	0.826	INTRON igl
2R	18449804	2R_18449804_SNP [dm3] 2R_22562299_SNP [dm6]	A	G	3.118e^-4	0.826	UPSTREAM CG11362 & 1 other DOWNSTREAM dnr1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5049836	2R_5049836_SNP [dm3] 2R_9162331_SNP [dm6]	G	A	3.122e^-4	0.826	UTR_3_PRIME CG8046 UPSTREAM CG8008 DOWNSTREAM CG8046 & 1 other
3R	27099798	3R_27099798_SNP [dm3] 3R_31274076_SNP [dm6]	A	C	3.124e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11412690	X_11412690_SNP [dm3] X_11518657_SNP [dm6]	T	A	3.127e^-4	0.826	INTRON Drak
2L	6698608	2L_6698608_SNP [dm3] 2L_6698608_SNP [dm6]	T	G	3.129e^-4	0.826	INTRON Tsp
3R	9685444	3R_9685444_SNP [dm3] 3R_13859722_SNP [dm6]	G	A	3.129e^-4	0.826	INTERGENIC
2L	6702314	2L_6702314_SNP [dm3] 2L_6702314_SNP [dm6]	A	G	3.134e^-4	0.826	INTRON Tsp
2R	5232428	2R_5232428_SNP [dm3] 2R_9344923_SNP [dm6]	A	G	3.134e^-4	0.826	UPSTREAM Or45a INTRON CG13954 & 1 other
X	7939965	X_7939965_DEL [dm3] X_8045932_DEL [dm6]	CT	C	3.136e^-4	0.826	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
X	2244846	X_2244846_SNP [dm3] X_2350813_SNP [dm6]	T	C	3.139e^-4	0.826	UPSTREAM ptr INTRON ptr
3R	9718759	3R_9718759_SNP [dm3] 3R_13893037_SNP [dm6]	T	C	3.139e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	17352712	3R_17352712_SNP [dm3] 3R_21526990_SNP [dm6]	C	G	3.140e^-4	0.826	UTR_3_PRIME CG7956 INTRON CG7956	TF binding site mE1_TFBS_cad
3R	10349587	3R_10349587_SNP [dm3] 3R_14523865_SNP [dm6]	G	C	3.140e^-4	0.826	DOWNSTREAM Cyp313a1 INTRON Pde6
3R	15217020	3R_15217020_SNP [dm3] 3R_19391298_SNP [dm6]	G	C	3.141e^-4	0.826	SYNONYMOUS_CODING CG18493 INTRON Ino80	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7787564	2L_7787564_SNP [dm3] 2L_7787564_SNP [dm6]	G	C	3.142e^-4	0.826	INTRON CG7149
3R	24876191	3R_24876191_SNP [dm3] 3R_29050469_SNP [dm6]	A	G	3.148e^-4	0.826	UPSTREAM CG11841 INTRON CG11837
2L	1744481	2L_1744481_SNP [dm3] 2L_1744481_SNP [dm6]	C	T	3.157e^-4	0.826	INTRON CG17646
X	15325168	X_15325168_SNP [dm3] X_15431135_SNP [dm6]	T	C	3.159e^-4	0.826	INTRON Cngl
2R	4433984	2R_4433984_SNP [dm3] 2R_8546479_SNP [dm6]	C	T	3.176e^-4	0.826	INTERGENIC
2R	4434002	2R_4434002_SNP [dm3] 2R_8546497_SNP [dm6]	G	A	3.176e^-4	0.826	INTERGENIC
3L	8197523	3L_8197523_SNP [dm3] 3L_8204423_SNP [dm6]	G	A	3.180e^-4	0.826	INTERGENIC
3L	8197559	3L_8197559_SNP [dm3] 3L_8204459_SNP [dm6]	G	A	3.180e^-4	0.826	INTERGENIC
2L	7784094	2L_7784094_SNP [dm3] 2L_7784094_SNP [dm6]	G	A	3.184e^-4	0.826	SYNONYMOUS_CODING CG7154	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6579439	2L_6579439_SNP [dm3] 2L_6579439_SNP [dm6]	C	A	3.187e^-4	0.826	INTRON CG11319
3R	11092637	3R_11092637_SNP [dm3] 3R_15266915_SNP [dm6]	T	A	3.200e^-4	0.826	SYNONYMOUS_CODING CG14864 DOWNSTREAM Oscp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3212581	2R_3212581_SNP [dm3] 2R_7325076_SNP [dm6]	C	A	3.200e^-4	0.826	UPSTREAM CR45129 INTRON Dscam1
2L	6702311	2L_6702311_SNP [dm3] 2L_6702311_SNP [dm6]	G	A	3.201e^-4	0.826	INTRON Tsp
2R	3345859	2R_3345859_INS [dm3] 2R_7458354_INS [dm6]	G	GTGG	3.201e^-4	0.826	INTRON Inos	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21031035	3R_21031035_SNP [dm3] 3R_25205313_SNP [dm6]	A	G	3.207e^-4	0.826	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
3L	8684042	3L_8684042_SNP [dm3] 3L_8690942_SNP [dm6]	T	C	3.211e^-4	0.826	INTERGENIC
X	19680364	X_19680364_SNP [dm3] X_19786331_SNP [dm6]	A	G	3.219e^-4	0.826	DOWNSTREAM CR44885 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13720801	X_13720801_SNP [dm3] X_13826768_SNP [dm6]	A	C	3.224e^-4	0.826	DOWNSTREAM Nup93-1 INTRON jub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14856291	2L_14856291_SNP [dm3] 2L_14856291_SNP [dm6]	T	C	3.225e^-4	0.826	INTERGENIC
3R	22262414	3R_22262414_SNP [dm3] 3R_26436692_SNP [dm6]	A	G	3.234e^-4	0.826	INTERGENIC
3R	11708220	3R_11708220_SNP [dm3] 3R_15882498_SNP [dm6]	G	A	3.234e^-4	0.826	INTERGENIC
2L	15013374	2L_15013374_SNP [dm3] 2L_15013374_SNP [dm6]	T	C	3.240e^-4	0.826	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18640680	2L_18640680_SNP [dm3] 2L_18640680_SNP [dm6]	T	A	3.242e^-4	0.826	INTRON MESR3
3L	3384376	3L_3384376_SNP [dm3] 3L_3384376_SNP [dm6]	A	G	3.243e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12903620	2L_12903620_SNP [dm3] 2L_12903620_SNP [dm6]	G	T	3.247e^-4	0.826	INTERGENIC
2R	11961652	2R_11961652_SNP [dm3] 2R_16074147_SNP [dm6]	T	A	3.257e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	7889209	3R_7889209_SNP [dm3] 3R_12063487_SNP [dm6]	G	A	3.258e^-4	0.826	UPSTREAM CG14740 INTERGENIC
3R	12245783	3R_12245783_SNP [dm3] 3R_16420061_SNP [dm6]	G	C	3.262e^-4	0.826	INTERGENIC	regulatory region REDfly_CRMs
2L	7096972	2L_7096972_SNP [dm3] 2L_7096972_SNP [dm6]	C	T	3.262e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	3164097	X_3164097_SNP [dm3] X_3270064_SNP [dm6]	A	G	3.263e^-4	0.826	INTRON dnc
X	13217515	X_13217515_SNP [dm3] X_13323482_SNP [dm6]	A	G	3.272e^-4	0.826	INTRON IP3K2
3R	21281413	3R_21281413_DEL [dm3] 3R_25455691_DEL [dm6]	CACAATCC	C	3.272e^-4	0.826	INTRON Fur1
2R	11506182	2R_11506182_SNP [dm3] 2R_15618677_SNP [dm6]	C	T	3.272e^-4	0.826	INTRON CG42524
2L	15817416	2L_15817416_SNP [dm3] 2L_15817416_SNP [dm6]	C	A	3.274e^-4	0.826	INTERGENIC
2L	7787041	2L_7787041_SNP [dm3] 2L_7787041_SNP [dm6]	A	G	3.282e^-4	0.826	DOWNSTREAM CG7154 INTRON CG7149
3L	12862580	3L_12862580_SNP [dm3] 3L_12869480_SNP [dm6]	T	C	3.289e^-4	0.826	INTERGENIC
2L	6140736	2L_6140736_SNP [dm3] 2L_6140736_SNP [dm6]	G	A	3.293e^-4	0.826	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11506370	2R_11506370_SNP [dm3] 2R_15618865_SNP [dm6]	G	A	3.304e^-4	0.826	INTRON CG42524
2R	3068588	2R_3068588_SNP [dm3] 2R_7181083_SNP [dm6]	G	A	3.313e^-4	0.826	UPSTREAM CG30385 DOWNSTREAM CG33140 INTRON pk
3R	11102183	3R_11102183_SNP [dm3] 3R_15276461_SNP [dm6]	C	G	3.320e^-4	0.826	UTR_3_PRIME CG4338 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10541117	3L_10541117_SNP [dm3] 3L_10548017_SNP [dm6]	C	A	3.320e^-4	0.826	INTRON A2bp1
3L	22418216	3L_22418216_SNP [dm3] 3L_22425116_SNP [dm6]	A	T	3.323e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3380626	3L_3380626_SNP [dm3] 3L_3380626_SNP [dm6]	A	T	3.324e^-4	0.826	DOWNSTREAM CG12014 INTERGENIC
3R	19617953	3R_19617953_SNP [dm3] 3R_23792231_SNP [dm6]	T	C	3.330e^-4	0.826	SPLICE_SITE_REGION mbc INTRON mbc
3R	17917689	3R_17917689_SNP [dm3] 3R_22091967_SNP [dm6]	T	G	3.336e^-4	0.826	INTRON CG5778
3R	26245117	3R_26245117_SNP [dm3] 3R_30419395_SNP [dm6]	T	A	3.349e^-4	0.826	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217	TF binding site mE1_TFBS_inv
3R	24816033	3R_24816033_SNP [dm3] 3R_28990311_SNP [dm6]	A	G	3.372e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10900139	2L_10900139_SNP [dm3] 2L_10900139_SNP [dm6]	A	G	3.376e^-4	0.826	DOWNSTREAM CG14070 INTERGENIC
X	3867726	X_3867726_INS [dm3] X_3973693_INS [dm6]	T	TT	3.381e^-4	0.826	INTERGENIC
2L	8510259	2L_8510259_SNP [dm3] 2L_8510259_SNP [dm6]	A	T	3.382e^-4	0.826	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2244792	X_2244792_SNP [dm3] X_2350759_SNP [dm6]	T	G	3.383e^-4	0.826	UPSTREAM ptr INTRON ptr
3R	23725377	3R_23725377_SNP [dm3] 3R_27899655_SNP [dm6]	G	A	3.391e^-4	0.826	INTRON CG34353
2L	8508139	2L_8508139_SNP [dm3] 2L_8508139_SNP [dm6]	G	A	3.393e^-4	0.826	DOWNSTREAM CG13096 INTERGENIC
2R	5012845	2R_5012845_SNP [dm3] 2R_9125340_SNP [dm6]	G	A	3.404e^-4	0.826	UTR_3_PRIME CG18659 INTRON CG18659	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8515266	2L_8515266_SNP [dm3] 2L_8515266_SNP [dm6]	A	G	3.405e^-4	0.826	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	20908441	X_20908441_SNP [dm3] X_21037414_SNP [dm6]	C	A	3.407e^-4	0.826	INTRON Ntf-2
2R	19160649	2R_19160649_SNP [dm3] 2R_23273126_SNP [dm6]	A	G	3.430e^-4	0.826	SYNONYMOUS_CODING ord
3R	14332807	3R_14332807_SNP [dm3] 3R_18507085_SNP [dm6]	T	A	3.436e^-4	0.826	UPSTREAM fru INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10349791	3L_10349791_SNP [dm3] 3L_10356691_SNP [dm6]	C	T	3.438e^-4	0.826	INTRON CR44327
2L	7635046	2L_7635046_DEL [dm3] 2L_7635046_DEL [dm6]	GTGT	G	3.439e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16471190	3R_16471190_SNP [dm3] 3R_20645468_SNP [dm6]	G	A	3.444e^-4	0.826	SYNONYMOUS_CODING GluRIIE
2L	15817107	2L_15817107_SNP [dm3] 2L_15817107_SNP [dm6]	A	G	3.459e^-4	0.826	INTERGENIC
2R	12414414	2R_12414414_SNP [dm3] 2R_16526909_SNP [dm6]	C	G	3.463e^-4	0.826	INTRON Sema-2a
X	2244770	X_2244770_SNP [dm3] X_2350737_SNP [dm6]	T	A	3.466e^-4	0.826	UPSTREAM ptr INTRON ptr
X	20908458	X_20908458_SNP [dm3] X_21037431_SNP [dm6]	A	T	3.467e^-4	0.826	INTRON Ntf-2
3L	9778988	3L_9778988_SNP [dm3] 3L_9785888_SNP [dm6]	G	A	3.470e^-4	0.826	UTR_3_PRIME CG8177 DOWNSTREAM CG8177
X	7631417	X_7631417_SNP [dm3] X_7737384_SNP [dm6]	T	C	3.471e^-4	0.826	UTR_5_PRIME Tom40 DOWNSTREAM Rab39 INTRON Tom40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	15801171	2L_15801171_SNP [dm3] 2L_15801171_SNP [dm6]	C	G	3.473e^-4	0.826	INTERGENIC
3R	9566544	3R_9566544_SNP [dm3] 3R_13740822_SNP [dm6]	C	T	3.487e^-4	0.826	INTRON CG34383
3R	15402468	3R_15402468_SNP [dm3] 3R_19576746_SNP [dm6]	A	T	3.487e^-4	0.826	INTRON Dys
X	14684918	X_14684918_SNP [dm3] X_14790885_SNP [dm6]	G	A	3.492e^-4	0.826	SPLICE_SITE_REGION rut INTRON rut	TF binding site mE1_TFBS_cad
2R	11510110	2R_11510110_SNP [dm3] 2R_15622605_SNP [dm6]	T	C	3.510e^-4	0.826	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25789706	3R_25789706_SNP [dm3] 3R_29963984_SNP [dm6]	A	C	3.512e^-4	0.826	INTRON TkR99D
X	2244844	X_2244844_SNP [dm3] X_2350811_SNP [dm6]	C	A	3.514e^-4	0.826	UPSTREAM ptr INTRON ptr
3R	9730418	3R_9730418_SNP [dm3] 3R_13904696_SNP [dm6]	A	C	3.521e^-4	0.826	DOWNSTREAM ems INTERGENIC
X	18461428	X_18461428_SNP [dm3] X_18567395_SNP [dm6]	T	C	3.529e^-4	0.826	INTRON Bx
2L	18578442	2L_18578442_DEL [dm3] 2L_18578442_DEL [dm6]	CC	T	3.531e^-4	0.826	INTRON Pde11
2L	7782870	2L_7782870_SNP [dm3] 2L_7782870_SNP [dm6]	G	A	3.536e^-4	0.826	UTR_5_PRIME CG7154 DOWNSTREAM CG7164	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13962084	3R_13962084_SNP [dm3] 3R_18136362_SNP [dm6]	A	G	3.552e^-4	0.826	DOWNSTREAM sr INTERGENIC
2L	22037844	2L_22037844_SNP [dm3] 2L_22037844_SNP [dm6]	C	A	3.562e^-4	0.826	UPSTREAM CG41434 INTERGENIC
3R	19216027	3R_19216027_DEL [dm3] 3R_23390305_DEL [dm6]	AGCACCA	A	3.566e^-4	0.826	EXON CR43387	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	21888860	X_21888860_SNP [dm3] X_22487024_SNP [dm6]	T	A	3.566e^-4	0.826	UPSTREAM l_1_G0196 DOWNSTREAM Cp110 & 1 other INTRON Cp110
2R	12060549	2R_12060549_SNP [dm3] 2R_16173044_SNP [dm6]	G	A	3.570e^-4	0.826	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2R	7403300	2R_7403300_SNP [dm3] 2R_11515795_SNP [dm6]	A	T	3.573e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	15936051	2R_15936051_SNP [dm3] 2R_20048546_SNP [dm6]	A	C	3.576e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	3471319	3L_3471319_SNP [dm3] 3L_3471319_SNP [dm6]	C	T	3.577e^-4	0.826	UPSTREAM CG14971 DOWNSTREAM CG32267 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7861369	3R_7861369_SNP [dm3] 3R_12035647_SNP [dm6]	G	T	3.583e^-4	0.826	DOWNSTREAM ssp5 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6299844	2L_6299844_SNP [dm3] 2L_6299844_SNP [dm6]	T	C	3.584e^-4	0.826	INTRON Ddr
X	12203510	X_12203510_SNP [dm3] X_12309477_SNP [dm6]	A	G	3.587e^-4	0.826	INTRON Ten-a
X	16489907	X_16489907_SNP [dm3] X_16595874_SNP [dm6]	C	T	3.596e^-4	0.826	UTR_3_PRIME CG9784 DOWNSTREAM crl & 1 other
2L	8515377	2L_8515377_SNP [dm3] 2L_8515377_SNP [dm6]	T	C	3.600e^-4	0.826	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18253812	3L_18253812_SNP [dm3] 3L_18260712_SNP [dm6]	G	T	3.600e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	1744312	2L_1744312_SNP [dm3] 2L_1744312_SNP [dm6]	A	G	3.600e^-4	0.826	INTRON CG17646
2L	19617999	2L_19617999_SNP [dm3] 2L_19617999_SNP [dm6]	G	C	3.607e^-4	0.826	INTRON Lar
3R	23237298	3R_23237298_SNP [dm3] 3R_27411576_SNP [dm6]	C	T	3.609e^-4	0.826	INTRON side
3L	10818393	3L_10818393_SNP [dm3] 3L_10825293_SNP [dm6]	A	C	3.611e^-4	0.826	EXON CR45246
X	18010094	X_18010094_SNP [dm3] X_18116061_SNP [dm6]	A	G	3.611e^-4	0.826	INTRON wupA	regulatory region REDfly_CRMs
X	17581432	X_17581432_SNP [dm3] X_17687399_SNP [dm6]	A	T	3.619e^-4	0.826	INTRON chas	TF binding site BDTNP1_TFBS_dl
3R	7916918	3R_7916918_SNP [dm3] 3R_12091196_SNP [dm6]	A	G	3.619e^-4	0.826	UPSTREAM CG14741 INTERGENIC
2L	22037848	2L_22037848_SNP [dm3] 2L_22037848_SNP [dm6]	T	A	3.621e^-4	0.826	UPSTREAM CG41434 INTERGENIC
3R	27035713	3R_27035713_SNP [dm3] 3R_31209991_SNP [dm6]	T	C	3.622e^-4	0.826	DOWNSTREAM Zwilch INTRON chp
3L	13129507	3L_13129507_SNP [dm3] 3L_13136407_SNP [dm6]	G	A	3.630e^-4	0.826	INTRON CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15172572	3L_15172572_SNP [dm3] 3L_15179472_SNP [dm6]	G	A	3.633e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25204559	3R_25204559_SNP [dm3] 3R_29378837_SNP [dm6]	T	C	3.644e^-4	0.826	INTRON Ptp99A
2L	14661412	2L_14661412_SNP [dm3] 2L_14661412_SNP [dm6]	T	C	3.645e^-4	0.826	INTRON osp
2L	7848569	2L_7848569_SNP [dm3] 2L_7848569_SNP [dm6]	C	G	3.664e^-4	0.826	SYNONYMOUS_CODING CG14535	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21943168	3R_21943168_SNP [dm3] 3R_26117446_SNP [dm6]	T	A	3.667e^-4	0.826	SPLICE_SITE_REGION CG31324 INTRON CG31324
3R	13291820	3R_13291820_SNP [dm3] 3R_17466098_SNP [dm6]	C	T	3.678e^-4	0.826	INTERGENIC
2R	5854517	2R_5854517_SNP [dm3] 2R_9967012_SNP [dm6]	A	G	3.697e^-4	0.826	UPSTREAM CG12133 INTERGENIC
2R	9278636	2R_9278636_SNP [dm3] 2R_13391131_SNP [dm6]	A	G	3.704e^-4	0.826	SYNONYMOUS_CODING CG43691
3R	7888576	3R_7888576_SNP [dm3] 3R_12062854_SNP [dm6]	G	A	3.705e^-4	0.826	UTR_5_PRIME CG14740
2L	4893404	2L_4893404_SNP [dm3] 2L_4893404_SNP [dm6]	C	A	3.712e^-4	0.826	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18256181	2L_18256181_SNP [dm3] 2L_18256181_SNP [dm6]	G	T	3.721e^-4	0.826	UPSTREAM CR43408 INTRON CG42750	TF binding site mE1_TFBS_HSA
3R	21277876	3R_21277876_INS [dm3] 3R_25452154_INS [dm6]	T	TT	3.727e^-4	0.826	INTRON Fur1
3R	24876221	3R_24876221_SNP [dm3] 3R_29050499_SNP [dm6]	G	C	3.729e^-4	0.826	SPLICE_SITE_REGION CG11837 SYNONYMOUS_CODING CG11837 UPSTREAM CG11841
2L	5153620	2L_5153620_SNP [dm3] 2L_5153620_SNP [dm6]	G	T	3.738e^-4	0.826	INTRON Msp300
2R	11295264	2R_11295264_SNP [dm3] 2R_15407759_SNP [dm6]	A	C	3.741e^-4	0.826	INTRON CG43729
3R	26969141	3R_26969141_SNP [dm3] 3R_31143419_SNP [dm6]	T	A	3.742e^-4	0.826	INTRON Gycbeta100B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1163662	3L_1163662_INS [dm3] 3L_1163662_INS [dm6]	C	CAAAATG	3.743e^-4	0.826	INTRON bab2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	10694593	3L_10694593_SNP [dm3] 3L_10701493_SNP [dm6]	G	C	3.743e^-4	0.826	INTERGENIC
2L	14240708	2L_14240708_SNP [dm3] 2L_14240708_SNP [dm6]	C	A	3.744e^-4	0.826	UPSTREAM CR44216 INTERGENIC
3R	10838412	3R_10838412_SNP [dm3] 3R_15012690_SNP [dm6]	C	G	3.746e^-4	0.826	INTERGENIC
X	9092352	X_9092352_SNP [dm3] X_9198319_SNP [dm6]	G	A	3.750e^-4	0.826	SYNONYMOUS_CODING su_r_	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8930510	2R_8930510_SNP [dm3] 2R_13043005_SNP [dm6]	G	A	3.750e^-4	0.826	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	7032223	3L_7032223_SNP [dm3] 3L_7039123_SNP [dm6]	G	A	3.755e^-4	0.826	INTRON Mp	TF binding site BDTNP1_TFBS_twi
2L	8512797	2L_8512797_SNP [dm3] 2L_8512797_SNP [dm6]	G	T	3.781e^-4	0.826	UPSTREAM CG13096 INTRON CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26409090	3R_26409090_SNP [dm3] 3R_30583368_SNP [dm6]	A	G	3.786e^-4	0.826	DOWNSTREAM CG9717 INTRON Rpt6R	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	15838483	2L_15838483_SNP [dm3] 2L_15838483_SNP [dm6]	A	G	3.791e^-4	0.826	INTERGENIC
3R	23379060	3R_23379060_SNP [dm3] 3R_27553338_SNP [dm6]	T	A	3.804e^-4	0.826	INTRON Klp98A
3R	12557689	3R_12557689_DEL [dm3] 3R_16731967_DEL [dm6]	CACTCGAT	C	3.806e^-4	0.826	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16310938	X_16310938_SNP [dm3] X_16416905_SNP [dm6]	T	C	3.807e^-4	0.826	SYNONYMOUS_CODING Traf-like DOWNSTREAM AnxB11
2R	10582811	2R_10582811_SNP [dm3] 2R_14695306_SNP [dm6]	T	C	3.809e^-4	0.826	INTRON mspo
3R	22262502	3R_22262502_SNP [dm3] 3R_26436780_SNP [dm6]	C	T	3.812e^-4	0.826	INTERGENIC
2L	15013456	2L_15013456_SNP [dm3] 2L_15013456_SNP [dm6]	A	G	3.821e^-4	0.826	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3922845	3L_3922845_SNP [dm3] 3L_3922845_SNP [dm6]	T	A	3.826e^-4	0.826	INTRON Eip63F-1
3R	22869229	3R_22869229_SNP [dm3] 3R_27043507_SNP [dm6]	C	T	3.830e^-4	0.826	INTRON RYa-R
3L	4434621	3L_4434621_SNP [dm3] 3L_4434621_SNP [dm6]	G	T	3.836e^-4	0.826	SYNONYMOUS_CODING nAChRbeta1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4530817	2R_4530817_SNP [dm3] 2R_8643312_SNP [dm6]	C	T	3.838e^-4	0.826	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4614320	2L_4614320_SNP [dm3] 2L_4614320_SNP [dm6]	G	C	3.843e^-4	0.826	UPSTREAM dp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7767300	3L_7767300_SNP [dm3] 3L_7774200_SNP [dm6]	C	A	3.849e^-4	0.826	INTRON Clk	regulatory region REDfly_CRMs
X	8868328	X_8868328_INS [dm3] X_8974295_INS [dm6]	G	GTG	3.853e^-4	0.826	UPSTREAM CG10962 INTRON rdgA & 1 other
2R	13148975	2R_13148975_SNP [dm3] 2R_17261470_SNP [dm6]	T	C	3.858e^-4	0.826	UPSTREAM mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	25720912	3R_25720912_SNP [dm3] 3R_29895190_SNP [dm6]	T	C	3.861e^-4	0.826	UTR_5_PRIME CG31038 INTRON CG31038	TF binding site BDTNP1_TFBS_twi
2L	4621018	2L_4621018_INS [dm3] 2L_4621018_INS [dm6]	A	TGCTTT	3.863e^-4	0.826	DOWNSTREAM CR44609 INTERGENIC
3R	10914897	3R_10914897_SNP [dm3] 3R_15089175_SNP [dm6]	C	T	3.866e^-4	0.826	INTRON CG6966	TF binding site mE1_TFBS_Trl
2L	10546045	2L_10546045_SNP [dm3] 2L_10546045_SNP [dm6]	C	T	3.867e^-4	0.826	SYNONYMOUS_CODING Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9718753	3R_9718753_SNP [dm3] 3R_13893031_SNP [dm6]	A	C	3.872e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	9718790	3R_9718790_SNP [dm3] 3R_13893068_SNP [dm6]	G	A	3.872e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	23124758	3R_23124758_SNP [dm3] 3R_27299036_SNP [dm6]	G	C	3.874e^-4	0.826	INTRON CG3339
3R	16928588	3R_16928588_SNP [dm3] 3R_21102866_SNP [dm6]	A	G	3.876e^-4	0.826	NON_SYNONYMOUS_CODING CG5745
2L	8233992	2L_8233992_SNP [dm3] 2L_8233992_SNP [dm6]	T	C	3.887e^-4	0.826	INTRON Pvr
2R	3575959	2R_3575959_SNP [dm3] 2R_7688454_SNP [dm6]	C	A	3.892e^-4	0.826	INTRON CG1399
3L	8708916	3L_8708916_SNP [dm3] 3L_8715816_SNP [dm6]	A	T	3.893e^-4	0.826	INTERGENIC
2R	3063953	2R_3063953_SNP [dm3] 2R_7176448_SNP [dm6]	A	G	3.897e^-4	0.826	SYNONYMOUS_CODING CG11060 INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8509176	2L_8509176_SNP [dm3] 2L_8509176_SNP [dm6]	C	T	3.899e^-4	0.826	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
2L	10903072	2L_10903072_SNP [dm3] 2L_10903072_SNP [dm6]	T	C	3.908e^-4	0.826	DOWNSTREAM CR45724 INTERGENIC
3R	11102301	3R_11102301_SNP [dm3] 3R_15276579_SNP [dm6]	T	G	3.908e^-4	0.826	UTR_3_PRIME MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6800672	3L_6800672_SNP [dm3] 3L_6807572_SNP [dm6]	A	G	3.909e^-4	0.826	INTERGENIC
3L	2273121	3L_2273121_INS [dm3] 3L_2273121_INS [dm6]	T	TCT	3.917e^-4	0.826	UPSTREAM tRNA:CR32303 & 1 other INTERGENIC
3L	9577332	3L_9577332_SNP [dm3] 3L_9584232_SNP [dm6]	A	C	3.918e^-4	0.826	INTRON CG42673
3R	20530304	3R_20530304_DEL [dm3] 3R_24704582_DEL [dm6]	ATTTTT	CC	3.938e^-4	0.826	INTRON slo
2L	7784103	2L_7784103_SNP [dm3] 2L_7784103_SNP [dm6]	G	C	3.940e^-4	0.826	SYNONYMOUS_CODING CG7154	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12666797	2L_12666797_SNP [dm3] 2L_12666797_SNP [dm6]	A	G	3.942e^-4	0.826	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8315123	3L_8315123_SNP [dm3] 3L_8322023_SNP [dm6]	G	A	3.947e^-4	0.826	SYNONYMOUS_CODING CG13670
3L	19021116	3L_19021116_SNP [dm3] 3L_19028016_SNP [dm6]	C	G	3.971e^-4	0.826	INTRON nkd
3L	1057312	3L_1057312_SNP [dm3] 3L_1057312_SNP [dm6]	A	C	3.971e^-4	0.826	INTRON bab1
3L	5639326	3L_5639326_SNP [dm3] 3L_5646226_SNP [dm6]	C	T	3.976e^-4	0.826	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4529275	2R_4529275_SNP [dm3] 2R_8641770_SNP [dm6]	A	G	3.976e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
3R	10994139	3R_10994139_SNP [dm3] 3R_15168417_SNP [dm6]	C	T	3.978e^-4	0.826	INTRON Gyc88E
2L	18304655	2L_18304655_SNP [dm3] 2L_18304655_SNP [dm6]	C	A	3.989e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2R	16917335	2R_16917335_SNP [dm3] 2R_21029830_SNP [dm6]	T	A	3.990e^-4	0.826	INTRON CR45148
3L	12367008	3L_12367008_SNP [dm3] 3L_12373908_SNP [dm6]	T	C	3.991e^-4	0.826	INTRON Ncc69	TF binding site mE1_TFBS_cad
2L	8510271	2L_8510271_SNP [dm3] 2L_8510271_SNP [dm6]	A	G	3.994e^-4	0.826	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15817483	2L_15817483_SNP [dm3] 2L_15817483_SNP [dm6]	A	G	3.995e^-4	0.826	INTERGENIC
2R	13852538	2R_13852538_SNP [dm3] 2R_17965033_SNP [dm6]	G	C	4.000e^-4	0.826	INTERGENIC
2R	19153910	2R_19153910_SNP [dm3] 2R_23266387_SNP [dm6]	A	G	4.002e^-4	0.826	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14924511	3R_14924511_SNP [dm3] 3R_19098789_SNP [dm6]	T	A	4.002e^-4	0.826	INTRON CG6040
3L	4166909	3L_4166909_SNP [dm3] 3L_4166909_SNP [dm6]	C	A	4.008e^-4	0.826	INTRON mas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	20908494	X_20908494_SNP [dm3] X_21037467_SNP [dm6]	T	C	4.017e^-4	0.826	INTRON Ntf-2
2L	12086571	2L_12086571_DEL [dm3] 2L_12086571_DEL [dm6]	AAAGT	A	4.025e^-4	0.826	UPSTREAM CR44593 & 1 other DOWNSTREAM CR44592 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	18570672	X_18570672_SNP [dm3] X_18676639_SNP [dm6]	G	A	4.026e^-4	0.826	EXON CR45710
X	16490590	X_16490590_DEL [dm3] X_16596557_DEL [dm6]	TGTAT	T	4.027e^-4	0.826	UTR_3_PRIME CG9784 DOWNSTREAM crl	TF binding site mE1_TFBS_cad
X	16490156	X_16490156_SNP [dm3] X_16596123_SNP [dm6]	T	A	4.032e^-4	0.826	UTR_3_PRIME CG9784 DOWNSTREAM crl & 1 other
3R	24743023	3R_24743023_SNP [dm3] 3R_28917301_SNP [dm6]	C	A	4.038e^-4	0.826	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7829573	2L_7829573_SNP [dm3] 2L_7829573_SNP [dm6]	T	C	4.043e^-4	0.826	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	975722	3L_975722_INS [dm3] 3L_975722_INS [dm6]	A	CAC	4.045e^-4	0.826	INTRON Glut1
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	4.046e^-4	0.826	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	11176370	2L_11176370_SNP [dm3] 2L_11176370_SNP [dm6]	T	C	4.047e^-4	0.826	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl
2R	19827566	2R_19827566_DEL [dm3] 2R_23940043_DEL [dm6]	ATCAATA	A	4.055e^-4	0.826	UPSTREAM Tal & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8515314	2L_8515314_SNP [dm3] 2L_8515314_SNP [dm6]	A	C	4.062e^-4	0.826	UPSTREAM CG13097 INTRON PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25954667	3R_25954667_SNP [dm3] 3R_30128945_SNP [dm6]	C	G	4.077e^-4	0.826	UTR_5_PRIME Ppi1 DOWNSTREAM CG31029
2L	8515386	2L_8515386_SNP [dm3] 2L_8515386_SNP [dm6]	T	C	4.084e^-4	0.826	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12531934	2L_12531934_SNP [dm3] 2L_12531934_SNP [dm6]	A	C	4.084e^-4	0.826	INTRON bun
2R	8556533	2R_8556533_SNP [dm3] 2R_12669028_SNP [dm6]	C	G	4.097e^-4	0.826	INTRON nemy
3R	13257741	3R_13257741_SNP [dm3] 3R_17432019_SNP [dm6]	T	C	4.099e^-4	0.826	INTRON CG5873
2L	1760163	2L_1760163_SNP [dm3] 2L_1760163_SNP [dm6]	T	A	4.106e^-4	0.826	INTERGENIC
3L	2675414	3L_2675414_SNP [dm3] 3L_2675414_SNP [dm6]	G	A	4.116e^-4	0.826	INTRON Fife
2L	3321244	2L_3321244_SNP [dm3] 2L_3321244_SNP [dm6]	T	G	4.118e^-4	0.826	INTRON CG8837
2R	12963163	2R_12963163_SNP [dm3] 2R_17075658_SNP [dm6]	C	A	4.119e^-4	0.826	NON_SYNONYMOUS_CODING CG30460 INTRON CG30460	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22869228	3R_22869228_SNP [dm3] 3R_27043506_SNP [dm6]	C	T	4.120e^-4	0.826	INTRON RYa-R
2L	16197159	2L_16197159_SNP [dm3] 2L_16197159_SNP [dm6]	G	A	4.126e^-4	0.826	UPSTREAM CR44735 INTERGENIC
2L	13568320	2L_13568320_SNP [dm3] 2L_13568320_SNP [dm6]	T	C	4.127e^-4	0.826	INTRON kuz
3R	15300018	3R_15300018_SNP [dm3] 3R_19474296_SNP [dm6]	A	G	4.129e^-4	0.826	INTRON Dys
X	3228449	X_3228449_INS [dm3] X_3334416_INS [dm6]	T	TC	4.129e^-4	0.826	INTRON CR44886 & 1 other
2R	16161621	2R_16161621_SNP [dm3] 2R_20274116_SNP [dm6]	A	G	4.138e^-4	0.826	SYNONYMOUS_CODING CG10444 UPSTREAM CG11788	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15816668	2L_15816668_SNP [dm3] 2L_15816668_SNP [dm6]	C	T	4.138e^-4	0.826	INTERGENIC
3R	22828581	3R_22828581_SNP [dm3] 3R_27002859_SNP [dm6]	A	G	4.138e^-4	0.826	UTR_3_PRIME CG31077 DOWNSTREAM CG6296 INTRON RYa-R
X	20908445	X_20908445_SNP [dm3] X_21037418_SNP [dm6]	G	C	4.140e^-4	0.826	INTRON Ntf-2
2L	10539701	2L_10539701_SNP [dm3] 2L_10539701_SNP [dm6]	C	T	4.141e^-4	0.826	INTERGENIC
X	13697951	X_13697951_SNP [dm3] X_13803918_SNP [dm6]	C	T	4.144e^-4	0.826	SYNONYMOUS_CODING inaE	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12402965	3L_12402965_SNP [dm3] 3L_12409865_SNP [dm6]	T	C	4.147e^-4	0.826	INTRON CG32103
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	4.147e^-4	0.826	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18488057	3R_18488057_SNP [dm3] 3R_22662335_SNP [dm6]	A	G	4.150e^-4	0.826	INTRON CG45058
3L	1659102	3L_1659102_SNP [dm3] 3L_1659102_SNP [dm6]	A	G	4.163e^-4	0.826	INTRON CG7971
X	2132118	X_2132118_SNP [dm3] X_2238085_SNP [dm6]	T	C	4.173e^-4	0.826	SYNONYMOUS_CODING kz DOWNSTREAM pcx
2R	12031365	2R_12031365_SNP [dm3] 2R_16143860_SNP [dm6]	T	C	4.174e^-4	0.826	SYNONYMOUS_CODING Aats-cys DOWNSTREAM CG30094	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16842889	2L_16842889_SNP [dm3] 2L_16842889_SNP [dm6]	A	T	4.176e^-4	0.826	UTR_3_PRIME CG13284 DOWNSTREAM CG13284
2R	17171199	2R_17171199_SNP [dm3] 2R_21283694_SNP [dm6]	T	C	4.181e^-4	0.826	SYNONYMOUS_CODING MFS16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	1697505	2L_1697505_SNP [dm3] 2L_1697505_SNP [dm6]	A	G	4.183e^-4	0.826	UTR_3_PRIME chinmo
X	16902973	X_16902973_SNP [dm3] X_17008940_SNP [dm6]	G	T	4.190e^-4	0.826	INTRON CG45002
3R	11101054	3R_11101054_SNP [dm3] 3R_15275332_SNP [dm6]	G	A	4.190e^-4	0.826	UPSTREAM CG4338 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17690531	3L_17690531_SNP [dm3] 3L_17697431_SNP [dm6]	G	A	4.192e^-4	0.826	INTRON Ccn
3L	2801424	3L_2801424_SNP [dm3] 3L_2801424_SNP [dm6]	A	G	4.198e^-4	0.826	INTRON CG43444	TF binding site mE1_TFBS_HSA
X	11412695	X_11412695_SNP [dm3] X_11518662_SNP [dm6]	A	C	4.199e^-4	0.826	INTRON Drak
2L	18988660	2L_18988660_SNP [dm3] 2L_18988660_SNP [dm6]	G	A	4.202e^-4	0.826	SYNONYMOUS_CODING CG15170 DOWNSTREAM CG15168	TF binding site mE1_TFBS_sens
3R	22262427	3R_22262427_SNP [dm3] 3R_26436705_SNP [dm6]	T	C	4.204e^-4	0.826	INTERGENIC
3L	9778495	3L_9778495_DEL [dm3] 3L_9785395_DEL [dm6]	AAAAGA	A	4.213e^-4	0.826	UTR_3_PRIME CG8177 DOWNSTREAM CG8177
2L	7787045	2L_7787045_SNP [dm3] 2L_7787045_SNP [dm6]	A	C	4.216e^-4	0.826	DOWNSTREAM CG7154 INTRON CG7149
2L	4304951	2L_4304951_SNP [dm3] 2L_4304951_SNP [dm6]	T	A	4.216e^-4	0.826	INTRON tutl
X	11657336	X_11657336_SNP [dm3] X_11763303_SNP [dm6]	G	T	4.216e^-4	0.826	DOWNSTREAM CG9360 INTRON m
3R	18488039	3R_18488039_SNP [dm3] 3R_22662317_SNP [dm6]	T	C	4.220e^-4	0.826	INTRON CG45058
X	8976963	X_8976963_SNP [dm3] X_9082930_SNP [dm6]	G	A	4.222e^-4	0.826	UPSTREAM APC4 DOWNSTREAM HP1b INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3R	15300064	3R_15300064_DEL [dm3] 3R_19474342_DEL [dm6]	TT	T	4.227e^-4	0.826	INTRON Dys
3R	9629501	3R_9629501_INS [dm3] 3R_13803779_INS [dm6]	A	AGCA	4.233e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7403502	2R_7403502_SNP [dm3] 2R_11515997_SNP [dm6]	C	T	4.244e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	14861845	2L_14861845_SNP [dm3] 2L_14861845_SNP [dm6]	A	C	4.247e^-4	0.826	INTERGENIC
X	21889592	X_21889592_SNP [dm3] X_22487756_SNP [dm6]	G	C	4.248e^-4	0.826	SYNONYMOUS_CODING l_1_G0196 DOWNSTREAM CR43493 & 1 other
2L	1042047	2L_1042047_SNP [dm3] 2L_1042047_SNP [dm6]	C	T	4.252e^-4	0.826	INTRON IA-2
3R	9730415	3R_9730415_SNP [dm3] 3R_13904693_SNP [dm6]	A	T	4.259e^-4	0.826	DOWNSTREAM ems INTERGENIC
2L	11172199	2L_11172199_SNP [dm3] 2L_11172199_SNP [dm6]	C	T	4.260e^-4	0.826	UPSTREAM Vm32E INTRON Ca-beta	TF binding site mE1_TFBS_cad
3R	11091314	3R_11091314_SNP [dm3] 3R_15265592_SNP [dm6]	C	T	4.262e^-4	0.826	START_GAINED Oscp UTR_5_PRIME Oscp DOWNSTREAM Set	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	15682615	3L_15682615_DEL [dm3] 3L_15689515_DEL [dm6]	TTT	T	4.264e^-4	0.826	UTR_5_PRIME CG34451 INTRON CG34451
3L	9374673	3L_9374673_INS [dm3] 3L_9381573_INS [dm6]	A	ACATCTA	4.265e^-4	0.826	UPSTREAM Hsp23 DOWNSTREAM CR43481 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20240459	3R_20240459_DEL [dm3] 3R_24414737_DEL [dm6]	TT	C	4.266e^-4	0.826	INTRON nAChRalpha1
X	19494885	X_19494885_SNP [dm3] X_19600852_SNP [dm6]	C	T	4.271e^-4	0.826	SYNONYMOUS_CODING CG14220	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26097962	3R_26097962_SNP [dm3] 3R_30272240_SNP [dm6]	T	A	4.274e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4748618	3L_4748618_SNP [dm3] 3L_4748618_SNP [dm6]	C	T	4.275e^-4	0.826	INTRON RhoGEF64C
2R	19088568	2R_19088568_INS [dm3] 2R_23201045_INS [dm6]	T	TT	4.277e^-4	0.826	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4926056	2L_4926056_SNP [dm3] 2L_4926056_SNP [dm6]	A	G	4.280e^-4	0.826	UTR_5_PRIME hoe1 INTRON hoe1
2R	10701684	2R_10701684_SNP [dm3] 2R_14814179_SNP [dm6]	T	A	4.283e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_Trl
X	19665860	X_19665860_SNP [dm3] X_19771827_SNP [dm6]	G	C	4.296e^-4	0.826	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10478366	3L_10478366_SNP [dm3] 3L_10485266_SNP [dm6]	G	A	4.298e^-4	0.826	INTRON A2bp1
X	21889962	X_21889962_INS [dm3] X_22488126_INS [dm6]	C	CA	4.301e^-4	0.826	DOWNSTREAM Cp110 INTRON l_1_G0196 EXON CR43493	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15230490	2R_15230490_SNP [dm3] 2R_19342985_SNP [dm6]	A	G	4.307e^-4	0.826	INTRON Rgk1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	5639383	3L_5639383_SNP [dm3] 3L_5646283_SNP [dm6]	G	T	4.313e^-4	0.826	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19410044	2R_19410044_SNP [dm3] 2R_23522521_SNP [dm6]	G	A	4.319e^-4	0.826	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	9577367	3L_9577367_SNP [dm3] 3L_9584267_SNP [dm6]	A	G	4.322e^-4	0.826	INTRON CG42673
2L	21279719	2L_21279719_DEL [dm3] 2L_21279719_DEL [dm6]	AC	A	4.326e^-4	0.826	INTRON CG8671	TF binding site mE1_TFBS_inv
3L	1495228	3L_1495228_SNP [dm3] 3L_1495228_SNP [dm6]	C	A	4.329e^-4	0.826	INTRON CG12084
2R	3448055	2R_3448055_SNP [dm3] 2R_7560550_SNP [dm6]	C	T	4.337e^-4	0.826	SYNONYMOUS_CODING Corin	TF binding site mE1_TFBS_cad
3R	9567304	3R_9567304_SNP [dm3] 3R_13741582_SNP [dm6]	T	C	4.337e^-4	0.826	INTRON CG34383
2L	13962844	2L_13962844_SNP [dm3] 2L_13962844_SNP [dm6]	T	A	4.341e^-4	0.826	UTR_3_PRIME NimA UPSTREAM NimB1
2R	7362268	2R_7362268_SNP [dm3] 2R_11474763_SNP [dm6]	A	G	4.351e^-4	0.826	UPSTREAM inv INTRON inv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1010713	2L_1010713_SNP [dm3] 2L_1010713_SNP [dm6]	C	A	4.351e^-4	0.826	UTR_3_PRIME IA-2 DOWNSTREAM IA-2
2R	14557679	2R_14557679_SNP [dm3] 2R_18670174_SNP [dm6]	C	A	4.352e^-4	0.826	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15901991	2L_15901991_SNP [dm3] 2L_15901991_SNP [dm6]	G	A	4.361e^-4	0.826	SYNONYMOUS_CODING CG31821	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9778960	3L_9778960_SNP [dm3] 3L_9785860_SNP [dm6]	G	A	4.362e^-4	0.826	UTR_3_PRIME CG8177 DOWNSTREAM CG8177
X	21144841	X_21144841_SNP [dm3] X_21273814_SNP [dm6]	T	C	4.373e^-4	0.826	INTRON CG32521
3R	11094609	3R_11094609_SNP [dm3] 3R_15268887_SNP [dm6]	T	C	4.374e^-4	0.826	NON_SYNONYMOUS_CODING Zip88E UPSTREAM CG14864	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	10948563	3L_10948563_SNP [dm3] 3L_10955463_SNP [dm6]	T	G	4.379e^-4	0.826	INTERGENIC
2L	14853218	2L_14853218_SNP [dm3] 2L_14853218_SNP [dm6]	G	A	4.381e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6865878	3L_6865878_SNP [dm3] 3L_6872778_SNP [dm6]	T	C	4.383e^-4	0.826	INTERGENIC
3L	12852676	3L_12852676_SNP [dm3] 3L_12859576_SNP [dm6]	C	T	4.386e^-4	0.826	SYNONYMOUS_CODING CG32107
2R	7362381	2R_7362381_SNP [dm3] 2R_11474876_SNP [dm6]	C	T	4.424e^-4	0.826	UTR_5_PRIME inv UPSTREAM inv	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1847319	3L_1847319_SNP [dm3] 3L_1847319_SNP [dm6]	A	T	4.430e^-4	0.826	INTERGENIC
3L	19512034	3L_19512034_SNP [dm3] 3L_19518934_SNP [dm6]	G	T	4.430e^-4	0.826	UPSTREAM Cpr76Ba & 1 other INTERGENIC
2R	17649096	2R_17649096_SNP [dm3] 2R_21761591_SNP [dm6]	C	T	4.442e^-4	0.826	INTERGENIC
3R	12933323	3R_12933323_SNP [dm3] 3R_17107601_SNP [dm6]	A	G	4.443e^-4	0.826	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9309595	2R_9309595_SNP [dm3] 2R_13422090_SNP [dm6]	G	A	4.446e^-4	0.826	DOWNSTREAM CG30060 INTRON CG42321
2L	13568336	2L_13568336_SNP [dm3] 2L_13568336_SNP [dm6]	C	A	4.448e^-4	0.826	INTRON kuz
2L	17325964	2L_17325964_SNP [dm3] 2L_17325964_SNP [dm6]	T	C	4.455e^-4	0.826	INTERGENIC
3L	10129646	3L_10129646_SNP [dm3] 3L_10136546_SNP [dm6]	T	C	4.457e^-4	0.826	INTRON dpr6
X	2244822	X_2244822_SNP [dm3] X_2350789_SNP [dm6]	T	A	4.464e^-4	0.826	UPSTREAM ptr INTRON ptr
3R	7895492	3R_7895492_SNP [dm3] 3R_12069770_SNP [dm6]	A	G	4.464e^-4	0.826	NON_SYNONYMOUS_CODING CG14741
2R	20021016	2R_20021016_SNP [dm3] 2R_24133493_SNP [dm6]	T	A	4.468e^-4	0.826	UTR_5_PRIME tamo UPSTREAM Zfrp8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9778508	3L_9778508_SNP [dm3] 3L_9785408_SNP [dm6]	A	G	4.476e^-4	0.826	UTR_3_PRIME CG8177 DOWNSTREAM CG8177
3L	7769153	3L_7769153_SNP [dm3] 3L_7776053_SNP [dm6]	A	G	4.478e^-4	0.826	UPSTREAM Clk INTERGENIC	regulatory region REDfly_CRMs
3R	13146373	3R_13146373_SNP [dm3] 3R_17320651_SNP [dm6]	T	G	4.482e^-4	0.826	UTR_3_PRIME beat-IIa
2L	5412487	2L_5412487_SNP [dm3] 2L_5412487_SNP [dm6]	A	G	4.482e^-4	0.826	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5549220	2L_5549220_SNP [dm3] 2L_5549220_SNP [dm6]	T	G	4.488e^-4	0.826	SPLICE_SITE_DONOR Oscillin UTR_3_PRIME Oscillin DOWNSTREAM CG14014 INTRON Oscillin
2R	13770078	2R_13770078_SNP [dm3] 2R_17882573_SNP [dm6]	T	C	4.491e^-4	0.826	UPSTREAM CG30110 INTRON Elk
X	2244769	X_2244769_SNP [dm3] X_2350736_SNP [dm6]	T	A	4.495e^-4	0.826	UPSTREAM ptr INTRON ptr
3L	15590854	3L_15590854_SNP [dm3] 3L_15597754_SNP [dm6]	C	T	4.496e^-4	0.826	INTRON RhoGAP71E
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	4.503e^-4	0.826	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6699643	2L_6699643_SNP [dm3] 2L_6699643_SNP [dm6]	T	G	4.504e^-4	0.826	INTRON Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	21278028	3R_21278028_SNP [dm3] 3R_25452306_SNP [dm6]	T	A	4.505e^-4	0.826	INTRON Fur1
2L	14887887	2L_14887887_SNP [dm3] 2L_14887887_SNP [dm6]	G	A	4.510e^-4	0.826	INTERGENIC
3R	26401924	3R_26401924_SNP [dm3] 3R_30576202_SNP [dm6]	A	G	4.512e^-4	0.826	UTR_3_PRIME tmod INTRON tmod
3L	7765430	3L_7765430_SNP [dm3] 3L_7772330_SNP [dm6]	G	A	4.515e^-4	0.826	INTRON Clk	regulatory region REDfly_CRMs TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	16390716	2L_16390716_SNP [dm3] 2L_16390716_SNP [dm6]	C	A	4.522e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	27039036	3R_27039036_SNP [dm3] 3R_31213314_SNP [dm6]	A	G	4.525e^-4	0.826	UTR_5_PRIME Zwilch UPSTREAM CG1542	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4420418	2L_4420418_SNP [dm3] 2L_4420418_SNP [dm6]	T	G	4.530e^-4	0.826	INTRON CG15431
2R	10114598	2R_10114598_INS [dm3] 2R_14227093_INS [dm6]	A	ACTTGTAG	4.531e^-4	0.826	INTRON CG8468
2R	10114639	2R_10114639_SNP [dm3] 2R_14227134_SNP [dm6]	A	T	4.531e^-4	0.826	INTRON CG8468
X	18639723	X_18639723_SNP [dm3] X_18745690_SNP [dm6]	A	G	4.536e^-4	0.826	DOWNSTREAM CG12609 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv

Missing results

By genomic position
Variant impact
Gene name

Cuticul_3_Me_C23 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results