DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.696e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.04478
In_3R_P	0.08966
In_3R_K	0.08722

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.2947	0.0695
In_2L_t	8.872	0.0118

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2153 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	1.577e^-14	2.108e^-8	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	2.248e^-14	2.108e^-8	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	4.207e^-14	2.631e^-8	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	1.088e^-13	3.574e^-8	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	1.088e^-13	3.574e^-8	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	1.143e^-13	3.574e^-8	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	1.426e^-13	3.821e^-8	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	3.433e^-13	8.050e^-8	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	5.003e^-13	1.043e^-7	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	6.546e^-13	1.228e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	1.298e^-12	2.214e^-7	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	1.644e^-12	2.569e^-7	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	2.399e^-12	3.461e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	2.674e^-12	3.582e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	3.938e^-12	4.746e^-7	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	4.116e^-12	4.746e^-7	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	4.302e^-12	4.746e^-7	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	7.327e^-12	7.446e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	7.543e^-12	7.446e^-7	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	1.300e^-11	1.219e^-6	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	1.440e^-11	1.286e^-6	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	1.650e^-11	1.407e^-6	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8521004	2L_8521004_SNP [dm3] 2L_8521004_SNP [dm6]	C	A	3.169e^-11	2.584e^-6	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	3.444e^-11	2.691e^-6	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	4.300e^-11	3.226e^-6	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	5.332e^-11	3.762e^-6	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	5.415e^-11	3.762e^-6	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	1.621e^-10	1.086e^-5	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	2.829e^-10	1.830e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	7.200e^-10	4.416e^-5	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	7.299e^-10	4.416e^-5	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8528806	2L_8528806_SNP [dm3] 2L_8528806_SNP [dm6]	A	C	7.641e^-10	4.479e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	1.027e^-9	5.837e^-5	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	1.254e^-9	6.920e^-5	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	3.564e^-9	1.910e^-4	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8514798	2L_8514798_SNP [dm3] 2L_8514798_SNP [dm6]	C	T	4.200e^-9	2.175e^-4	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	4.291e^-9	2.175e^-4	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8515600	2L_8515600_SNP [dm3] 2L_8515600_SNP [dm6]	T	C	6.506e^-9	3.211e^-4	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8525183	2L_8525183_SNP [dm3] 2L_8525183_SNP [dm6]	G	T	8.078e^-9	3.885e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	9.117e^-9	4.275e^-4	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	1.088e^-8	4.976e^-4	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	1.349e^-8	6.024e^-4	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	2.165e^-8	9.444e^-4	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	2.751e^-8	0.001	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8511667	2L_8511667_SNP [dm3] 2L_8511667_SNP [dm6]	C	G	3.233e^-8	0.001	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8529353	2L_8529353_DEL [dm3] 2L_8529353_DEL [dm6]	ATAAAAA	A	3.364e^-8	0.001	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_prd
2L	8515482	2L_8515482_SNP [dm3] 2L_8515482_SNP [dm6]	C	T	3.379e^-8	0.001	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	3.518e^-8	0.001	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	3.520e^-8	0.001	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8529262	2L_8529262_SNP [dm3] 2L_8529262_SNP [dm6]	T	C	4.227e^-8	0.002	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8529430	2L_8529430_SNP [dm3] 2L_8529430_SNP [dm6]	T	A	5.338e^-8	0.002	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2L	8529275	2L_8529275_SNP [dm3] 2L_8529275_SNP [dm6]	A	G	6.164e^-8	0.002	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8529270	2L_8529270_SNP [dm3] 2L_8529270_SNP [dm6]	C	A	6.446e^-8	0.002	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8523117	2L_8523117_SNP [dm3] 2L_8523117_SNP [dm6]	A	G	6.899e^-8	0.002	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8515035	2L_8515035_SNP [dm3] 2L_8515035_SNP [dm6]	G	T	7.179e^-8	0.002	UPSTREAM PIG-U & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8512797	2L_8512797_SNP [dm3] 2L_8512797_SNP [dm6]	G	T	1.193e^-7	0.004	UPSTREAM CG13096 INTRON CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8514835	2L_8514835_SNP [dm3] 2L_8514835_SNP [dm6]	A	T	1.308e^-7	0.004	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	1.327e^-7	0.004	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8517273	2L_8517273_SNP [dm3] 2L_8517273_SNP [dm6]	A	G	1.383e^-7	0.004	NON_SYNONYMOUS_CODING mRpL51 UPSTREAM CG13090 DOWNSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8523105	2L_8523105_SNP [dm3] 2L_8523105_SNP [dm6]	G	C	1.741e^-7	0.005	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8523133	2L_8523133_SNP [dm3] 2L_8523133_SNP [dm6]	G	A	1.741e^-7	0.005	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	2.012e^-7	0.006	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	2.339e^-7	0.007	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	2.339e^-7	0.007	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515266	2L_8515266_SNP [dm3] 2L_8515266_SNP [dm6]	A	G	2.411e^-7	0.007	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8515386	2L_8515386_SNP [dm3] 2L_8515386_SNP [dm6]	T	C	2.435e^-7	0.007	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515362	2L_8515362_SNP [dm3] 2L_8515362_SNP [dm6]	T	G	2.587e^-7	0.007	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8515377	2L_8515377_SNP [dm3] 2L_8515377_SNP [dm6]	T	C	2.730e^-7	0.008	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8512026	2L_8512026_SNP [dm3] 2L_8512026_SNP [dm6]	G	A	2.899e^-7	0.008	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8515387	2L_8515387_SNP [dm3] 2L_8515387_SNP [dm6]	C	T	3.321e^-7	0.009	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529325	2L_8529325_SNP [dm3] 2L_8529325_SNP [dm6]	G	T	3.371e^-7	0.009	START_GAINED CG17834 UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	3.586e^-7	0.009	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	3.705e^-7	0.01	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8515461	2L_8515461_SNP [dm3] 2L_8515461_SNP [dm6]	T	C	3.782e^-7	0.01	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	4.719e^-7	0.012	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8513167	2L_8513167_SNP [dm3] 2L_8513167_SNP [dm6]	C	T	5.215e^-7	0.013	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2141763	3L_2141763_SNP [dm3] 3L_2141763_SNP [dm6]	G	T	6.572e^-7	0.016	INTRON zormin	TF binding site mE1_TFBS_inv
2L	8512024	2L_8512024_SNP [dm3] 2L_8512024_SNP [dm6]	T	G	7.665e^-7	0.018	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8525341	2L_8525341_SNP [dm3] 2L_8525341_SNP [dm6]	C	A	8.425e^-7	0.02	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3L	2260288	3L_2260288_SNP [dm3] 3L_2260288_SNP [dm6]	G	A	9.093e^-7	0.021	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8525348	2L_8525348_SNP [dm3] 2L_8525348_SNP [dm6]	T	A	1.209e^-6	0.028	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3L	2141753	3L_2141753_SNP [dm3] 3L_2141753_SNP [dm6]	C	G	1.209e^-6	0.028	INTRON zormin	TF binding site mE1_TFBS_inv
2L	8525344	2L_8525344_SNP [dm3] 2L_8525344_SNP [dm6]	G	A	1.253e^-6	0.028	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525346	2L_8525346_SNP [dm3] 2L_8525346_SNP [dm6]	C	T	1.253e^-6	0.028	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525339	2L_8525339_SNP [dm3] 2L_8525339_SNP [dm6]	G	A	1.281e^-6	0.028	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3L	8633024	3L_8633024_SNP [dm3] 3L_8639924_SNP [dm6]	A	G	1.384e^-6	0.03	UPSTREAM Cpr66D INTERGENIC
2L	8529328	2L_8529328_SNP [dm3] 2L_8529328_SNP [dm6]	G	A	1.433e^-6	0.031	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2L	8510192	2L_8510192_DEL [dm3] 2L_8510192_DEL [dm6]	AGGCAGTGGTATTGCAAATT...	A	1.444e^-6	0.031	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8525349	2L_8525349_SNP [dm3] 2L_8525349_SNP [dm6]	C	T	1.513e^-6	0.032	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8510259	2L_8510259_SNP [dm3] 2L_8510259_SNP [dm6]	A	T	1.570e^-6	0.033	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8510361	2L_8510361_SNP [dm3] 2L_8510361_SNP [dm6]	C	A	1.657e^-6	0.034	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8515314	2L_8515314_SNP [dm3] 2L_8515314_SNP [dm6]	A	C	1.672e^-6	0.034	UPSTREAM CG13097 INTRON PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8509953	2L_8509953_SNP [dm3] 2L_8509953_SNP [dm6]	G	A	1.806e^-6	0.036	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8510267	2L_8510267_SNP [dm3] 2L_8510267_SNP [dm6]	C	T	1.898e^-6	0.038	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2260373	3L_2260373_SNP [dm3] 3L_2260373_SNP [dm6]	G	A	1.909e^-6	0.038	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8529795	2L_8529795_SNP [dm3] 2L_8529795_SNP [dm6]	G	T	2.042e^-6	0.04	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8523537	2L_8523537_SNP [dm3] 2L_8523537_SNP [dm6]	C	A	2.120e^-6	0.041	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
3L	3385109	3L_3385109_SNP [dm3] 3L_3385109_SNP [dm6]	A	C	2.344e^-6	0.045	INTERGENIC
2L	8529408	2L_8529408_SNP [dm3] 2L_8529408_SNP [dm6]	G	A	2.352e^-6	0.045	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3L	8633026	3L_8633026_SNP [dm3] 3L_8639926_SNP [dm6]	G	A	2.387e^-6	0.045	UPSTREAM Cpr66D INTERGENIC

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Missing results

By genomic position
Variant impact
Gene name

Cuticul_NI_7 phenotype

Phenotype distribution and association to known covariates

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GWAS results