DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.696e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.04478
In_3R_P	0.08966
In_3R_K	0.08722

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.2947	0.0695
In_2L_t	8.872	0.0118

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2153 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	1.577e^-14	2.108e^-8	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	2.248e^-14	2.108e^-8	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	4.207e^-14	2.631e^-8	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	1.088e^-13	3.574e^-8	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	1.088e^-13	3.574e^-8	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	1.143e^-13	3.574e^-8	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	1.426e^-13	3.821e^-8	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	3.433e^-13	8.050e^-8	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	5.003e^-13	1.043e^-7	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	6.546e^-13	1.228e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	1.298e^-12	2.214e^-7	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	1.644e^-12	2.569e^-7	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	2.399e^-12	3.461e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	2.674e^-12	3.582e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	3.938e^-12	4.746e^-7	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	4.116e^-12	4.746e^-7	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	4.302e^-12	4.746e^-7	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	7.327e^-12	7.446e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	7.543e^-12	7.446e^-7	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	1.300e^-11	1.219e^-6	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	1.440e^-11	1.286e^-6	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	1.650e^-11	1.407e^-6	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8521004	2L_8521004_SNP [dm3] 2L_8521004_SNP [dm6]	C	A	3.169e^-11	2.584e^-6	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	3.444e^-11	2.691e^-6	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	4.300e^-11	3.226e^-6	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	5.332e^-11	3.762e^-6	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	5.415e^-11	3.762e^-6	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	1.621e^-10	1.086e^-5	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	2.829e^-10	1.830e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	7.200e^-10	4.416e^-5	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	7.299e^-10	4.416e^-5	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8528806	2L_8528806_SNP [dm3] 2L_8528806_SNP [dm6]	A	C	7.641e^-10	4.479e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	1.027e^-9	5.837e^-5	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	1.254e^-9	6.920e^-5	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	3.564e^-9	1.910e^-4	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8514798	2L_8514798_SNP [dm3] 2L_8514798_SNP [dm6]	C	T	4.200e^-9	2.175e^-4	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	4.291e^-9	2.175e^-4	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8515600	2L_8515600_SNP [dm3] 2L_8515600_SNP [dm6]	T	C	6.506e^-9	3.211e^-4	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8525183	2L_8525183_SNP [dm3] 2L_8525183_SNP [dm6]	G	T	8.078e^-9	3.885e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	9.117e^-9	4.275e^-4	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	1.088e^-8	4.976e^-4	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	1.349e^-8	6.024e^-4	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	2.165e^-8	9.444e^-4	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	2.751e^-8	0.001	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8511667	2L_8511667_SNP [dm3] 2L_8511667_SNP [dm6]	C	G	3.233e^-8	0.001	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8529353	2L_8529353_DEL [dm3] 2L_8529353_DEL [dm6]	ATAAAAA	A	3.364e^-8	0.001	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_prd
2L	8515482	2L_8515482_SNP [dm3] 2L_8515482_SNP [dm6]	C	T	3.379e^-8	0.001	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	3.518e^-8	0.001	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	3.520e^-8	0.001	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8529262	2L_8529262_SNP [dm3] 2L_8529262_SNP [dm6]	T	C	4.227e^-8	0.002	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8529430	2L_8529430_SNP [dm3] 2L_8529430_SNP [dm6]	T	A	5.338e^-8	0.002	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2L	8529275	2L_8529275_SNP [dm3] 2L_8529275_SNP [dm6]	A	G	6.164e^-8	0.002	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8529270	2L_8529270_SNP [dm3] 2L_8529270_SNP [dm6]	C	A	6.446e^-8	0.002	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8523117	2L_8523117_SNP [dm3] 2L_8523117_SNP [dm6]	A	G	6.899e^-8	0.002	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8515035	2L_8515035_SNP [dm3] 2L_8515035_SNP [dm6]	G	T	7.179e^-8	0.002	UPSTREAM PIG-U & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8512797	2L_8512797_SNP [dm3] 2L_8512797_SNP [dm6]	G	T	1.193e^-7	0.004	UPSTREAM CG13096 INTRON CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8514835	2L_8514835_SNP [dm3] 2L_8514835_SNP [dm6]	A	T	1.308e^-7	0.004	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	1.327e^-7	0.004	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8517273	2L_8517273_SNP [dm3] 2L_8517273_SNP [dm6]	A	G	1.383e^-7	0.004	NON_SYNONYMOUS_CODING mRpL51 UPSTREAM CG13090 DOWNSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8523105	2L_8523105_SNP [dm3] 2L_8523105_SNP [dm6]	G	C	1.741e^-7	0.005	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8523133	2L_8523133_SNP [dm3] 2L_8523133_SNP [dm6]	G	A	1.741e^-7	0.005	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	2.012e^-7	0.006	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	2.339e^-7	0.007	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	2.339e^-7	0.007	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515266	2L_8515266_SNP [dm3] 2L_8515266_SNP [dm6]	A	G	2.411e^-7	0.007	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8515386	2L_8515386_SNP [dm3] 2L_8515386_SNP [dm6]	T	C	2.435e^-7	0.007	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515362	2L_8515362_SNP [dm3] 2L_8515362_SNP [dm6]	T	G	2.587e^-7	0.007	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8515377	2L_8515377_SNP [dm3] 2L_8515377_SNP [dm6]	T	C	2.730e^-7	0.008	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8512026	2L_8512026_SNP [dm3] 2L_8512026_SNP [dm6]	G	A	2.899e^-7	0.008	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8515387	2L_8515387_SNP [dm3] 2L_8515387_SNP [dm6]	C	T	3.321e^-7	0.009	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529325	2L_8529325_SNP [dm3] 2L_8529325_SNP [dm6]	G	T	3.371e^-7	0.009	START_GAINED CG17834 UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	3.586e^-7	0.009	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	3.705e^-7	0.01	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8515461	2L_8515461_SNP [dm3] 2L_8515461_SNP [dm6]	T	C	3.782e^-7	0.01	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	4.719e^-7	0.012	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8513167	2L_8513167_SNP [dm3] 2L_8513167_SNP [dm6]	C	T	5.215e^-7	0.013	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2141763	3L_2141763_SNP [dm3] 3L_2141763_SNP [dm6]	G	T	6.572e^-7	0.016	INTRON zormin	TF binding site mE1_TFBS_inv
2L	8512024	2L_8512024_SNP [dm3] 2L_8512024_SNP [dm6]	T	G	7.665e^-7	0.018	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8525341	2L_8525341_SNP [dm3] 2L_8525341_SNP [dm6]	C	A	8.425e^-7	0.02	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3L	2260288	3L_2260288_SNP [dm3] 3L_2260288_SNP [dm6]	G	A	9.093e^-7	0.021	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8525348	2L_8525348_SNP [dm3] 2L_8525348_SNP [dm6]	T	A	1.209e^-6	0.028	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3L	2141753	3L_2141753_SNP [dm3] 3L_2141753_SNP [dm6]	C	G	1.209e^-6	0.028	INTRON zormin	TF binding site mE1_TFBS_inv
2L	8525344	2L_8525344_SNP [dm3] 2L_8525344_SNP [dm6]	G	A	1.253e^-6	0.028	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525346	2L_8525346_SNP [dm3] 2L_8525346_SNP [dm6]	C	T	1.253e^-6	0.028	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525339	2L_8525339_SNP [dm3] 2L_8525339_SNP [dm6]	G	A	1.281e^-6	0.028	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3L	8633024	3L_8633024_SNP [dm3] 3L_8639924_SNP [dm6]	A	G	1.384e^-6	0.03	UPSTREAM Cpr66D INTERGENIC
2L	8529328	2L_8529328_SNP [dm3] 2L_8529328_SNP [dm6]	G	A	1.433e^-6	0.031	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2L	8510192	2L_8510192_DEL [dm3] 2L_8510192_DEL [dm6]	AGGCAGTGGTATTGCAAATT...	A	1.444e^-6	0.031	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8525349	2L_8525349_SNP [dm3] 2L_8525349_SNP [dm6]	C	T	1.513e^-6	0.032	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8510259	2L_8510259_SNP [dm3] 2L_8510259_SNP [dm6]	A	T	1.570e^-6	0.033	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8510361	2L_8510361_SNP [dm3] 2L_8510361_SNP [dm6]	C	A	1.657e^-6	0.034	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8515314	2L_8515314_SNP [dm3] 2L_8515314_SNP [dm6]	A	C	1.672e^-6	0.034	UPSTREAM CG13097 INTRON PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8509953	2L_8509953_SNP [dm3] 2L_8509953_SNP [dm6]	G	A	1.806e^-6	0.036	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8510267	2L_8510267_SNP [dm3] 2L_8510267_SNP [dm6]	C	T	1.898e^-6	0.038	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2260373	3L_2260373_SNP [dm3] 3L_2260373_SNP [dm6]	G	A	1.909e^-6	0.038	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8529795	2L_8529795_SNP [dm3] 2L_8529795_SNP [dm6]	G	T	2.042e^-6	0.04	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8523537	2L_8523537_SNP [dm3] 2L_8523537_SNP [dm6]	C	A	2.120e^-6	0.041	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
3L	3385109	3L_3385109_SNP [dm3] 3L_3385109_SNP [dm6]	A	C	2.344e^-6	0.045	INTERGENIC
2L	8529408	2L_8529408_SNP [dm3] 2L_8529408_SNP [dm6]	G	A	2.352e^-6	0.045	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3L	8633026	3L_8633026_SNP [dm3] 3L_8639926_SNP [dm6]	G	A	2.387e^-6	0.045	UPSTREAM Cpr66D INTERGENIC
3L	8633004	3L_8633004_SNP [dm3] 3L_8639904_SNP [dm6]	G	A	2.587e^-6	0.048	UPSTREAM Cpr66D INTERGENIC
3L	12658873	3L_12658873_SNP [dm3] 3L_12665773_SNP [dm6]	T	C	2.799e^-6	0.051	INTERGENIC
2L	8514725	2L_8514725_SNP [dm3] 2L_8514725_SNP [dm6]	C	T	3.032e^-6	0.055	SYNONYMOUS_CODING CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7175145	2L_7175145_SNP [dm3] 2L_7175145_SNP [dm6]	G	T	3.127e^-6	0.056	UPSTREAM CR44610 INTERGENIC
2L	8527335	2L_8527335_SNP [dm3] 2L_8527335_SNP [dm6]	T	C	3.130e^-6	0.056	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1531232	3L_1531232_SNP [dm3] 3L_1531232_SNP [dm6]	A	G	3.348e^-6	0.059	NON_SYNONYMOUS_CODING Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3384714	3L_3384714_SNP [dm3] 3L_3384714_SNP [dm6]	G	A	3.364e^-6	0.059	INTERGENIC
3L	1531229	3L_1531229_SNP [dm3] 3L_1531229_SNP [dm6]	A	T	3.659e^-6	0.064	NON_SYNONYMOUS_CODING Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8508773	2L_8508773_SNP [dm3] 2L_8508773_SNP [dm6]	G	A	3.737e^-6	0.064	DOWNSTREAM CG13096 INTERGENIC
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	4.011e^-6	0.068	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8526541	2L_8526541_SNP [dm3] 2L_8526541_SNP [dm6]	T	C	4.667e^-6	0.079	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others	TF binding site mE1_TFBS_cad
2L	8508793	2L_8508793_SNP [dm3] 2L_8508793_SNP [dm6]	C	T	5.017e^-6	0.084	DOWNSTREAM CG13096 INTERGENIC
2L	4609381	2L_4609381_SNP [dm3] 2L_4609381_SNP [dm6]	G	T	5.051e^-6	0.084	INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8527155	2L_8527155_SNP [dm3] 2L_8527155_SNP [dm6]	C	T	5.155e^-6	0.085	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15252624	3R_15252624_SNP [dm3] 3R_19426902_SNP [dm6]	A	T	5.221e^-6	0.085	INTRON CG31221
2L	8510271	2L_8510271_SNP [dm3] 2L_8510271_SNP [dm6]	A	G	5.679e^-6	0.092	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8512075	2L_8512075_SNP [dm3] 2L_8512075_SNP [dm6]	A	T	6.194e^-6	0.099	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	21183857	3R_21183857_SNP [dm3] 3R_25358135_SNP [dm6]	C	A	6.286e^-6	0.1	UPSTREAM CG11913 INTRON Fur1
2R	7784665	2R_7784665_SNP [dm3] 2R_11897160_SNP [dm6]	G	A	6.339e^-6	0.1	SYNONYMOUS_CODING MCPH1	TF binding site mE1_TFBS_sens
2L	8510360	2L_8510360_SNP [dm3] 2L_8510360_SNP [dm6]	T	A	6.673e^-6	0.104	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8530229	2L_8530229_SNP [dm3] 2L_8530229_SNP [dm6]	G	A	7.062e^-6	0.109	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8530244	2L_8530244_SNP [dm3] 2L_8530244_SNP [dm6]	G	A	7.231e^-6	0.111	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	9879514	2L_9879514_SNP [dm3] 2L_9879514_SNP [dm6]	A	G	8.113e^-6	0.124	INTRON nAChRalpha6
2L	8530438	2L_8530438_SNP [dm3] 2L_8530438_SNP [dm6]	T	A	8.411e^-6	0.127	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3384712	3L_3384712_SNP [dm3] 3L_3384712_SNP [dm6]	A	G	8.439e^-6	0.127	INTERGENIC
3L	3385002	3L_3385002_SNP [dm3] 3L_3385002_SNP [dm6]	T	G	8.668e^-6	0.129	INTERGENIC
3R	20014929	3R_20014929_SNP [dm3] 3R_24189207_SNP [dm6]	T	A	8.789e^-6	0.129	UPSTREAM CG5515 INTRON jnj	TF binding site BDTNP1_TFBS_twi
3R	20014935	3R_20014935_SNP [dm3] 3R_24189213_SNP [dm6]	C	A	8.789e^-6	0.129	UPSTREAM CG5515 INTRON jnj	TF binding site BDTNP1_TFBS_twi
3R	25346596	3R_25346596_SNP [dm3] 3R_29520874_SNP [dm6]	T	A	9.208e^-6	0.134	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8529982	2L_8529982_SNP [dm3] 2L_8529982_SNP [dm6]	A	T	9.954e^-6	0.144	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	17261339	X_17261339_SNP [dm3] X_17367306_SNP [dm6]	G	A	1.009e^-5	0.144	INTERGENIC
2L	8521077	2L_8521077_SNP [dm3] 2L_8521077_SNP [dm6]	T	C	1.044e^-5	0.148	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	827628	3L_827628_SNP [dm3] 3L_827628_SNP [dm6]	A	G	1.063e^-5	0.15	UPSTREAM snoRNA:Me28S-C788b & 2 others DOWNSTREAM snoRNA:Me28S-G3113a INTRON CG13900 & 1 other
3L	17915791	3L_17915791_SNP [dm3] 3L_17922691_SNP [dm6]	G	A	1.111e^-5	0.155	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	827631	3L_827631_INS [dm3] 3L_827631_INS [dm6]	T	TT	1.125e^-5	0.156	UPSTREAM snoRNA:Me28S-C788b & 2 others DOWNSTREAM snoRNA:Me28S-G3113a INTRON CG13900 & 1 other
3L	803849	3L_803849_SNP [dm3] 3L_803849_SNP [dm6]	G	A	1.177e^-5	0.162	NON_SYNONYMOUS_CODING CG13898	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	8531131	2L_8531131_SNP [dm3] 2L_8531131_SNP [dm6]	C	A	1.181e^-5	0.162	INTRON CG17834
2L	8520815	2L_8520815_SNP [dm3] 2L_8520815_SNP [dm6]	T	C	1.208e^-5	0.164	NON_SYNONYMOUS_CODING CG13091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	827426	3L_827426_SNP [dm3] 3L_827426_SNP [dm6]	T	C	1.214e^-5	0.164	UTR_3_PRIME CG13900 UPSTREAM snoRNA:Me28S-C788b & 1 other DOWNSTREAM snoRNA:Me28S-G3113b & 1 other EXON CR45184
2L	8512136	2L_8512136_INS [dm3] 2L_8512136_INS [dm6]	A	AAAACATTAACATATTAACT...	1.256e^-5	0.167	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	9629501	3R_9629501_INS [dm3] 3R_13803779_INS [dm6]	A	AGCA	1.258e^-5	0.167	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6926242	3R_6926242_SNP [dm3] 3R_11100520_SNP [dm6]	G	T	1.276e^-5	0.169	UPSTREAM CR45579 INTERGENIC
2R	8642356	2R_8642356_SNP [dm3] 2R_12754851_SNP [dm6]	G	A	1.362e^-5	0.179	UTR_5_PRIME Taz INTRON Taz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8512125	2L_8512125_INS [dm3] 2L_8512125_INS [dm6]	T	TCGATTCAAACTCATGCTAA...	1.398e^-5	0.18	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	24781179	3R_24781179_SNP [dm3] 3R_28955457_SNP [dm6]	C	A	1.399e^-5	0.18	INTRON CG14521
2L	8512102	2L_8512102_SNP [dm3] 2L_8512102_SNP [dm6]	T	C	1.407e^-5	0.18	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	1556855	3R_1556855_SNP [dm3] 3R_5731133_SNP [dm6]	T	G	1.414e^-5	0.18	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	18366718	2R_18366718_SNP [dm3] 2R_22479213_SNP [dm6]	T	C	1.505e^-5	0.191	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad
2L	8512119	2L_8512119_INS [dm3] 2L_8512119_INS [dm6]	T	TATTAGTAGAGACAGAC...	1.518e^-5	0.191	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	7784505	2R_7784505_SNP [dm3] 2R_11897000_SNP [dm6]	C	T	1.526e^-5	0.191	UTR_3_PRIME MCPH1 INTRON MCPH1	TF binding site mE1_TFBS_sens
3L	9839226	3L_9839226_SNP [dm3] 3L_9846126_SNP [dm6]	G	A	1.571e^-5	0.195	INTRON RasGAP1	TF binding site BDTNP1_TFBS_dl
2L	8539516	2L_8539516_SNP [dm3] 2L_8539516_SNP [dm6]	C	T	1.603e^-5	0.198	INTRON CG17834
2L	8511481	2L_8511481_SNP [dm3] 2L_8511481_SNP [dm6]	C	G	1.627e^-5	0.199	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1168475	3L_1168475_SNP [dm3] 3L_1168475_SNP [dm6]	G	C	1.639e^-5	0.199	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17677588	3L_17677588_INS [dm3] 3L_17684488_INS [dm6]	C	CG	1.644e^-5	0.199	DOWNSTREAM CG34251 INTERGENIC
2L	3827724	2L_3827724_SNP [dm3] 2L_3827724_SNP [dm6]	T	A	1.691e^-5	0.203	DOWNSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7786899	2R_7786899_SNP [dm3] 2R_11899394_SNP [dm6]	A	T	1.735e^-5	0.207	UPSTREAM Zip48C INTRON MCPH1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1165958	3L_1165958_SNP [dm3] 3L_1165958_SNP [dm6]	A	G	1.775e^-5	0.21	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe
2L	12829544	2L_12829544_SNP [dm3] 2L_12829544_SNP [dm6]	G	A	1.782e^-5	0.21	INTERGENIC
3R	6926236	3R_6926236_SNP [dm3] 3R_11100514_SNP [dm6]	T	A	1.822e^-5	0.214	UPSTREAM CR45579 INTERGENIC
X	16877173	X_16877173_SNP [dm3] X_16983140_SNP [dm6]	T	C	1.839e^-5	0.214	INTRON CG45002
3L	827637	3L_827637_SNP [dm3] 3L_827637_SNP [dm6]	C	T	1.854e^-5	0.215	UPSTREAM snoRNA:Me28S-C788b & 2 others DOWNSTREAM snoRNA:Me28S-G3113a INTRON CG13900 & 1 other
2L	19680788	2L_19680788_SNP [dm3] 2L_19680788_SNP [dm6]	G	A	1.878e^-5	0.215	INTRON Lar	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	23673628	3R_23673628_SNP [dm3] 3R_27847906_SNP [dm6]	C	T	1.904e^-5	0.215	DOWNSTREAM Or98a INTRON CG34353
3L	3385163	3L_3385163_SNP [dm3] 3L_3385163_SNP [dm6]	C	T	1.907e^-5	0.215	INTERGENIC
3R	6884319	3R_6884319_SNP [dm3] 3R_11058597_SNP [dm6]	T	C	1.927e^-5	0.215	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16843683	X_16843683_DEL [dm3] X_16949650_DEL [dm6]	TT	T	1.927e^-5	0.215	INTRON RhoGAP15B
2L	19652093	2L_19652093_SNP [dm3] 2L_19652093_SNP [dm6]	G	A	1.940e^-5	0.215	INTRON Lar
2L	19652094	2L_19652094_SNP [dm3] 2L_19652094_SNP [dm6]	T	C	1.940e^-5	0.215	INTRON Lar
3L	2143471	3L_2143471_SNP [dm3] 3L_2143471_SNP [dm6]	C	T	2.074e^-5	0.229	INTRON zormin
2R	11381827	2R_11381827_SNP [dm3] 2R_15494322_SNP [dm6]	A	T	2.119e^-5	0.232	INTRON CG12964
2R	8467841	2R_8467841_SNP [dm3] 2R_12580336_SNP [dm6]	G	A	2.166e^-5	0.236	NON_SYNONYMOUS_CODING Sin3A
3L	9087414	3L_9087414_SNP [dm3] 3L_9094314_SNP [dm6]	C	G	2.208e^-5	0.239	INTRON CG32032
2L	8503802	2L_8503802_SNP [dm3] 2L_8503802_SNP [dm6]	A	T	2.262e^-5	0.244	INTRON Dh31
3R	21646854	3R_21646854_SNP [dm3] 3R_25821132_SNP [dm6]	C	A	2.334e^-5	0.25	INTERGENIC
2R	18261619	2R_18261619_SNP [dm3] 2R_22374114_SNP [dm6]	T	A	2.399e^-5	0.256	UPSTREAM Rtf1 INTRON CR44759	TF binding site BDTNP1_TFBS_dl
2L	3991884	2L_3991884_SNP [dm3] 2L_3991884_SNP [dm6]	C	A	2.438e^-5	0.258	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_Trl
2R	7799416	2R_7799416_SNP [dm3] 2R_11911911_SNP [dm6]	C	T	2.477e^-5	0.26	INTRON CG13183
2R	17877386	2R_17877386_INS [dm3] 2R_21989881_INS [dm6]	A	TAG	2.481e^-5	0.26	INTRON CG34370	TF binding site mE1_TFBS_cad
2L	3827837	2L_3827837_INS [dm3] 2L_3827837_INS [dm6]	A	AA	2.512e^-5	0.262	DOWNSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8508139	2L_8508139_SNP [dm3] 2L_8508139_SNP [dm6]	G	A	2.533e^-5	0.262	DOWNSTREAM CG13096 INTERGENIC
2R	7784408	2R_7784408_SNP [dm3] 2R_11896903_SNP [dm6]	T	G	2.563e^-5	0.264	UTR_3_PRIME MCPH1 INTRON MCPH1
3L	904429	3L_904429_SNP [dm3] 3L_904429_SNP [dm6]	T	C	2.622e^-5	0.269	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	12658855	3L_12658855_SNP [dm3] 3L_12665755_SNP [dm6]	G	A	2.649e^-5	0.269	INTERGENIC
2L	4187266	2L_4187266_SNP [dm3] 2L_4187266_SNP [dm6]	G	A	2.654e^-5	0.269	NON_SYNONYMOUS_CODING CG31961 UPSTREAM lectin-24Db	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_sens
3R	6926261	3R_6926261_SNP [dm3] 3R_11100539_SNP [dm6]	T	C	2.679e^-5	0.27	UPSTREAM CR45579 INTERGENIC
X	6204221	X_6204221_SNP [dm3] X_6310188_SNP [dm6]	T	G	2.719e^-5	0.27	INTRON CG15894
2L	13743819	2L_13743819_SNP [dm3] 2L_13743819_SNP [dm6]	C	T	2.720e^-5	0.27	INTERGENIC
3R	2664404	3R_2664404_SNP [dm3] 3R_6838682_SNP [dm6]	A	G	2.724e^-5	0.27	INTRON Scr	regulatory region REDfly_CRMs
2L	12821201	2L_12821201_SNP [dm3] 2L_12821201_SNP [dm6]	A	G	2.796e^-5	0.276	SYNONYMOUS_CODING kek1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	18621721	3R_18621721_SNP [dm3] 3R_22795999_SNP [dm6]	G	A	2.827e^-5	0.278	INTERGENIC
2L	8528680	2L_8528680_SNP [dm3] 2L_8528680_SNP [dm6]	G	A	2.876e^-5	0.28	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
2L	8528690	2L_8528690_DEL [dm3] 2L_8528690_DEL [dm6]	TTTGT	T	2.876e^-5	0.28	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
2L	8510992	2L_8510992_SNP [dm3] 2L_8510992_SNP [dm6]	G	T	2.892e^-5	0.28	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19675632	2L_19675632_SNP [dm3] 2L_19675632_SNP [dm6]	C	T	2.920e^-5	0.28	INTRON Lar
2R	13681294	2R_13681294_SNP [dm3] 2R_17793789_SNP [dm6]	T	C	2.928e^-5	0.28	UTR_5_PRIME Dhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7799446	2R_7799446_SNP [dm3] 2R_11911941_SNP [dm6]	T	C	2.948e^-5	0.28	INTRON CG13183
3L	2141868	3L_2141868_SNP [dm3] 3L_2141868_SNP [dm6]	C	T	2.994e^-5	0.28	INTRON zormin	TF binding site mE1_TFBS_inv
2R	8566651	2R_8566651_SNP [dm3] 2R_12679146_SNP [dm6]	C	G	3.004e^-5	0.28	DOWNSTREAM CG8771 INTRON CG42708	TF binding site mE1_TFBS_Trl
2L	8529492	2L_8529492_SNP [dm3] 2L_8529492_SNP [dm6]	T	A	3.007e^-5	0.28	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2L	8528747	2L_8528747_SNP [dm3] 2L_8528747_SNP [dm6]	A	T	3.017e^-5	0.28	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528757	2L_8528757_SNP [dm3] 2L_8528757_SNP [dm6]	C	T	3.017e^-5	0.28	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528710	2L_8528710_SNP [dm3] 2L_8528710_SNP [dm6]	C	T	3.040e^-5	0.281	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5632986	2L_5632986_SNP [dm3] 2L_5632986_SNP [dm6]	C	A	3.109e^-5	0.286	SYNONYMOUS_CODING CG31646 UPSTREAM CR44822
3L	2679592	3L_2679592_SNP [dm3] 3L_2679592_SNP [dm6]	A	T	3.135e^-5	0.287	INTRON Fife	TF binding site mE1_TFBS_chinmo
2R	7786599	2R_7786599_SNP [dm3] 2R_11899094_SNP [dm6]	C	G	3.175e^-5	0.289	UPSTREAM Zip48C INTRON MCPH1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12658858	3L_12658858_DEL [dm3] 3L_12665758_DEL [dm6]	GAGGGCCGGG	G	3.214e^-5	0.29	INTERGENIC
3R	6926231	3R_6926231_SNP [dm3] 3R_11100509_SNP [dm6]	T	A	3.219e^-5	0.29	UPSTREAM CR45579 INTERGENIC
2L	8528696	2L_8528696_SNP [dm3] 2L_8528696_SNP [dm6]	A	G	3.246e^-5	0.291	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8522155	2L_8522155_SNP [dm3] 2L_8522155_SNP [dm6]	A	C	3.363e^-5	0.297	UTR_5_PRIME Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	2658997	3R_2658997_SNP [dm3] 3R_6833275_SNP [dm6]	A	T	3.377e^-5	0.297	INTRON Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	827633	3L_827633_SNP [dm3] 3L_827633_SNP [dm6]	G	C	3.378e^-5	0.297	UPSTREAM snoRNA:Me28S-C788b & 2 others DOWNSTREAM snoRNA:Me28S-G3113a INTRON CG13900 & 1 other
3R	21186997	3R_21186997_SNP [dm3] 3R_25361275_SNP [dm6]	A	T	3.380e^-5	0.297	INTRON Fur1
2L	8524608	2L_8524608_SNP [dm3] 2L_8524608_SNP [dm6]	C	T	3.400e^-5	0.297	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2L	8526617	2L_8526617_DEL [dm3] 2L_8526617_DEL [dm6]	AA	A	3.404e^-5	0.297	UTR_3_PRIME lmgB & 1 other DOWNSTREAM Acer	TF binding site mE1_TFBS_cad
X	3344426	X_3344426_SNP [dm3] X_3450393_SNP [dm6]	C	T	3.447e^-5	0.297	INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	7785315	2R_7785315_SNP [dm3] 2R_11897810_SNP [dm6]	A	G	3.456e^-5	0.297	SYNONYMOUS_CODING MCPH1	TF binding site mE1_TFBS_sens
2L	8528687	2L_8528687_SNP [dm3] 2L_8528687_SNP [dm6]	G	T	3.467e^-5	0.297	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
X	16843732	X_16843732_SNP [dm3] X_16949699_SNP [dm6]	G	A	3.473e^-5	0.297	INTRON RhoGAP15B
3R	2740508	3R_2740508_SNP [dm3] 3R_6914786_SNP [dm6]	G	T	3.518e^-5	0.3	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6884252	3R_6884252_SNP [dm3] 3R_11058530_SNP [dm6]	A	G	3.548e^-5	0.301	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19512411	3L_19512411_SNP [dm3] 3L_19519311_SNP [dm6]	T	C	3.589e^-5	0.302	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3R	21299736	3R_21299736_SNP [dm3] 3R_25474014_SNP [dm6]	G	A	3.590e^-5	0.302	SYNONYMOUS_CODING Vps33B UPSTREAM Fur1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	7784407	2R_7784407_SNP [dm3] 2R_11896902_SNP [dm6]	T	G	3.616e^-5	0.303	UTR_3_PRIME MCPH1 INTRON MCPH1
3R	10386334	3R_10386334_SNP [dm3] 3R_14560612_SNP [dm6]	G	T	3.647e^-5	0.304	UPSTREAM CG14850 & 1 other INTERGENIC
3L	1178293	3L_1178293_SNP [dm3] 3L_1178293_SNP [dm6]	A	G	3.734e^-5	0.31	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	21475339	X_21475339_SNP [dm3] X_21604312_SNP [dm6]	C	A	3.792e^-5	0.313	INTRON CG14476	transposable element FlyBase
3R	6926226	3R_6926226_MNP [dm3] 3R_11100504_MNP [dm6]	ATT	TAC	3.807e^-5	0.313	UPSTREAM CR45579 INTERGENIC
2L	8503801	2L_8503801_SNP [dm3] 2L_8503801_SNP [dm6]	G	A	3.827e^-5	0.313	INTRON Dh31
3L	1366822	3L_1366822_SNP [dm3] 3L_1366822_SNP [dm6]	G	C	3.834e^-5	0.313	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5143434	3L_5143434_SNP [dm3] 3L_5150334_SNP [dm6]	A	G	3.864e^-5	0.314	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8508842	2L_8508842_SNP [dm3] 2L_8508842_SNP [dm6]	T	A	3.898e^-5	0.314	DOWNSTREAM CG13096 INTERGENIC
3R	17334119	3R_17334119_SNP [dm3] 3R_21508397_SNP [dm6]	T	A	3.902e^-5	0.314	INTRON C15
2L	12837446	2L_12837446_SNP [dm3] 2L_12837446_SNP [dm6]	C	A	3.964e^-5	0.317	INTERGENIC
2L	7177138	2L_7177138_SNP [dm3] 2L_7177138_SNP [dm6]	G	A	3.989e^-5	0.317	DOWNSTREAM CR44613 INTERGENIC
3R	17829591	3R_17829591_SNP [dm3] 3R_22003869_SNP [dm6]	C	T	4.004e^-5	0.317	INTRON Eip93F	TF binding site mE1_TFBS_cad
X	3797241	X_3797241_SNP [dm3] X_3903208_SNP [dm6]	G	C	4.016e^-5	0.317	INTRON CG42541
X	16841542	X_16841542_DEL [dm3] X_16947509_DEL [dm6]	CCGTCCTATGGC...	C	4.022e^-5	0.317	DOWNSTREAM CG13000 INTRON RhoGAP15B
2R	8468002	2R_8468002_SNP [dm3] 2R_12580497_SNP [dm6]	A	T	4.057e^-5	0.318	SYNONYMOUS_CODING Sin3A
3R	3100315	3R_3100315_INS [dm3] 3R_7274593_INS [dm6]	G	GGCGCTGTGTCTACGTTTG...	4.119e^-5	0.321	INTRON rn
2L	12829560	2L_12829560_SNP [dm3] 2L_12829560_SNP [dm6]	C	A	4.126e^-5	0.321	INTERGENIC
3L	2143454	3L_2143454_SNP [dm3] 3L_2143454_SNP [dm6]	T	A	4.161e^-5	0.322	INTRON zormin
3L	3367239	3L_3367239_SNP [dm3] 3L_3367239_SNP [dm6]	T	A	4.228e^-5	0.326	INTRON kst	TF binding site mE1_TFBS_cad
3R	21300013	3R_21300013_SNP [dm3] 3R_25474291_SNP [dm6]	G	C	4.259e^-5	0.326	SYNONYMOUS_CODING Vps33B
X	12533985	X_12533985_SNP [dm3] X_12639952_SNP [dm6]	G	A	4.275e^-5	0.326	INTRON Tomosyn
3R	25346614	3R_25346614_INS [dm3] 3R_29520892_INS [dm6]	T	TGTGTAT	4.279e^-5	0.326	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4504016	2L_4504016_SNP [dm3] 2L_4504016_SNP [dm6]	A	T	4.291e^-5	0.326	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17334022	3R_17334022_SNP [dm3] 3R_21508300_SNP [dm6]	C	A	4.323e^-5	0.327	INTRON C15
2L	8508376	2L_8508376_INS [dm3] 2L_8508376_INS [dm6]	G	GG	4.569e^-5	0.344	DOWNSTREAM CG13096 INTERGENIC
3L	9087333	3L_9087333_SNP [dm3] 3L_9094233_SNP [dm6]	T	G	4.631e^-5	0.347	INTRON CG32032
3R	6926221	3R_6926221_SNP [dm3] 3R_11100499_SNP [dm6]	T	A	4.725e^-5	0.353	UPSTREAM CR45579 INTERGENIC
2L	8540528	2L_8540528_SNP [dm3] 2L_8540528_SNP [dm6]	C	T	4.751e^-5	0.354	SYNONYMOUS_CODING CG17834	TF binding site BDTNP1_TFBS_twi
2R	18260119	2R_18260119_SNP [dm3] 2R_22372614_SNP [dm6]	T	C	4.849e^-5	0.36	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
3L	2646651	3L_2646651_SNP [dm3] 3L_2646651_SNP [dm6]	G	A	4.898e^-5	0.361	UTR_3_PRIME CG1143 DOWNSTREAM CG1143	TF binding site mE1_TFBS_cad
2L	8507808	2L_8507808_SNP [dm3] 2L_8507808_SNP [dm6]	C	A	4.908e^-5	0.361	UPSTREAM Dh31 INTERGENIC
2R	7784479	2R_7784479_SNP [dm3] 2R_11896974_SNP [dm6]	T	C	5.016e^-5	0.367	UTR_3_PRIME MCPH1 INTRON MCPH1	TF binding site mE1_TFBS_sens
3R	20739448	3R_20739448_SNP [dm3] 3R_24913726_SNP [dm6]	A	C	5.063e^-5	0.367	DOWNSTREAM CR44267 INTRON PIG-S
3R	10733502	3R_10733502_SNP [dm3] 3R_14907780_SNP [dm6]	G	A	5.065e^-5	0.367	INTERGENIC
3L	8251103	3L_8251103_SNP [dm3] 3L_8258003_SNP [dm6]	A	T	5.091e^-5	0.367	INTRON Dscam4
X	18547264	X_18547264_SNP [dm3] X_18653231_SNP [dm6]	A	G	5.108e^-5	0.367	UPSTREAM Ing3 DOWNSTREAM CG6659 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14978668	3R_14978668_DEL [dm3] 3R_19152946_DEL [dm6]	ATTTACCAATATAGCGCAA...	G	5.121e^-5	0.367	INTRON CG5835
3L	9087331	3L_9087331_SNP [dm3] 3L_9094231_SNP [dm6]	T	A	5.147e^-5	0.367	INTRON CG32032
3L	6813942	3L_6813942_SNP [dm3] 3L_6820842_SNP [dm6]	G	A	5.170e^-5	0.367	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	8966284	X_8966284_SNP [dm3] X_9072251_SNP [dm6]	C	A	5.193e^-5	0.367	UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
3R	6882282	3R_6882282_SNP [dm3] 3R_11056560_SNP [dm6]	A	C	5.211e^-5	0.367	INTERGENIC
2R	13188611	2R_13188611_SNP [dm3] 2R_17301106_SNP [dm6]	C	T	5.214e^-5	0.367	INTRON mbl
2R	17094139	2R_17094139_INS [dm3] 2R_21206634_INS [dm6]	T	TGAG	5.227e^-5	0.367	INTRON CG44245 & 1 other
2R	7784804	2R_7784804_SNP [dm3] 2R_11897299_SNP [dm6]	T	G	5.271e^-5	0.369	NON_SYNONYMOUS_CODING MCPH1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12471959	2R_12471959_SNP [dm3] 2R_16584454_SNP [dm6]	C	T	5.287e^-5	0.369	SYNONYMOUS_CODING Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8525866	2L_8525866_INS [dm3] 2L_8525866_INS [dm6]	T	TTCGCTTTTT	5.369e^-5	0.372	UTR_3_PRIME lmgB & 1 other DOWNSTREAM Acer & 2 others
3L	2260192	3L_2260192_SNP [dm3] 3L_2260192_SNP [dm6]	A	C	5.388e^-5	0.372	NON_SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8435974	3L_8435974_SNP [dm3] 3L_8442874_SNP [dm6]	A	G	5.391e^-5	0.372	UPSTREAM Unr DOWNSTREAM CG6983 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3873175	2R_3873175_SNP [dm3] 2R_7985670_SNP [dm6]	A	T	5.458e^-5	0.374	NON_SYNONYMOUS_CODING ACC INTRON ACC
2L	11225535	2L_11225535_SNP [dm3] 2L_11225535_SNP [dm6]	G	A	5.470e^-5	0.374	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1165957	3L_1165957_SNP [dm3] 3L_1165957_SNP [dm6]	C	A	5.500e^-5	0.375	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe
2R	11839011	2R_11839011_SNP [dm3] 2R_15951506_SNP [dm6]	C	G	5.578e^-5	0.378	UPSTREAM Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck
2L	8503788	2L_8503788_SNP [dm3] 2L_8503788_SNP [dm6]	A	G	5.618e^-5	0.378	INTRON Dh31
2L	8503798	2L_8503798_SNP [dm3] 2L_8503798_SNP [dm6]	A	G	5.618e^-5	0.378	INTRON Dh31
2L	8509116	2L_8509116_SNP [dm3] 2L_8509116_SNP [dm6]	C	T	5.628e^-5	0.378	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
3R	14076317	3R_14076317_SNP [dm3] 3R_18250595_SNP [dm6]	G	A	5.726e^-5	0.381	UPSTREAM CG18598 DOWNSTREAM 14-3-3epsilon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8526190	2L_8526190_SNP [dm3] 2L_8526190_SNP [dm6]	T	A	5.734e^-5	0.381	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8526214	2L_8526214_SNP [dm3] 2L_8526214_SNP [dm6]	A	T	5.734e^-5	0.381	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
3L	795043	3L_795043_SNP [dm3] 3L_795043_SNP [dm6]	C	T	5.790e^-5	0.384	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17243828	X_17243828_SNP [dm3] X_17349795_SNP [dm6]	T	A	5.814e^-5	0.384	INTERGENIC
3R	9629496	3R_9629496_SNP [dm3] 3R_13803774_SNP [dm6]	C	T	5.871e^-5	0.386	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7796524	X_7796524_SNP [dm3] X_7902491_SNP [dm6]	T	C	5.897e^-5	0.387	SYNONYMOUS_CODING bys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	13738369	2L_13738369_SNP [dm3] 2L_13738369_SNP [dm6]	C	T	5.969e^-5	0.39	INTERGENIC
2L	8526027	2L_8526027_SNP [dm3] 2L_8526027_SNP [dm6]	G	A	6.004e^-5	0.39	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8526055	2L_8526055_SNP [dm3] 2L_8526055_SNP [dm6]	G	A	6.004e^-5	0.39	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	5483529	2L_5483529_SNP [dm3] 2L_5483529_SNP [dm6]	G	A	6.063e^-5	0.392	INTERGENIC
3L	10099534	3L_10099534_SNP [dm3] 3L_10106434_SNP [dm6]	A	C	6.083e^-5	0.392	INTRON dpr6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17243838	X_17243838_SNP [dm3] X_17349805_SNP [dm6]	T	A	6.225e^-5	0.4	INTERGENIC
2L	6939472	2L_6939472_SNP [dm3] 2L_6939472_SNP [dm6]	A	T	6.255e^-5	0.4	INTRON CG18304	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	6939484	2L_6939484_SNP [dm3] 2L_6939484_SNP [dm6]	G	T	6.280e^-5	0.401	INTRON CG18304	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	8509112	2L_8509112_SNP [dm3] 2L_8509112_SNP [dm6]	G	A	6.301e^-5	0.401	UTR_3_PRIME CG13096 DOWNSTREAM CG13096
3L	1239752	3L_1239752_SNP [dm3] 3L_1239752_SNP [dm6]	T	C	6.348e^-5	0.402	SPLICE_SITE_REGION CG9194 SYNONYMOUS_CODING CG9194	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	7784839	2R_7784839_SNP [dm3] 2R_11897334_SNP [dm6]	C	G	6.474e^-5	0.408	NON_SYNONYMOUS_CODING MCPH1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18079582	3R_18079582_SNP [dm3] 3R_22253860_SNP [dm6]	G	T	6.486e^-5	0.408	INTRON SKIP
2L	17291149	2L_17291149_SNP [dm3] 2L_17291149_SNP [dm6]	G	A	6.501e^-5	0.408	UTR_3_PRIME CG6380
2R	10860499	2R_10860499_SNP [dm3] 2R_14972994_SNP [dm6]	C	A	6.531e^-5	0.408	INTRON ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17243819	X_17243819_SNP [dm3] X_17349786_SNP [dm6]	A	T	6.545e^-5	0.408	INTERGENIC
2R	5608096	2R_5608096_SNP [dm3] 2R_9720591_SNP [dm6]	T	G	6.589e^-5	0.408	INTRON sqa
3L	1168455	3L_1168455_SNP [dm3] 3L_1168455_SNP [dm6]	A	C	6.610e^-5	0.408	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10732953	3R_10732953_SNP [dm3] 3R_14907231_SNP [dm6]	A	G	6.613e^-5	0.408	INTERGENIC
X	8859774	X_8859774_SNP [dm3] X_8965741_SNP [dm6]	T	C	6.662e^-5	0.409	UPSTREAM mir-4964 INTRON rdgA
X	21008377	X_21008377_SNP [dm3] X_21137350_SNP [dm6]	C	T	6.685e^-5	0.409	SYNONYMOUS_CODING CG34120
2L	5002390	2L_5002390_SNP [dm3] 2L_5002390_SNP [dm6]	C	A	6.700e^-5	0.409	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	7638451	2L_7638451_SNP [dm3] 2L_7638451_SNP [dm6]	A	G	6.717e^-5	0.409	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	9697166	3R_9697166_SNP [dm3] 3R_13871444_SNP [dm6]	A	G	6.765e^-5	0.411	INTRON E5
X	8257655	X_8257655_SNP [dm3] X_8363622_SNP [dm6]	G	T	6.851e^-5	0.412	INTRON nAChRalpha3
2L	10825996	2L_10825996_SNP [dm3] 2L_10825996_SNP [dm6]	G	C	6.860e^-5	0.412	SYNONYMOUS_CODING Nos
2R	3873093	2R_3873093_SNP [dm3] 2R_7985588_SNP [dm6]	T	C	6.878e^-5	0.412	INTRON ACC
3L	8633033	3L_8633033_SNP [dm3] 3L_8639933_SNP [dm6]	G	A	6.884e^-5	0.412	UPSTREAM Cpr66D INTERGENIC
X	21062308	X_21062308_SNP [dm3] X_21191281_SNP [dm6]	G	T	6.889e^-5	0.412	INTERGENIC	transposable element FlyBase
3R	17333993	3R_17333993_SNP [dm3] 3R_21508271_SNP [dm6]	C	T	6.976e^-5	0.415	INTRON C15
3R	7766539	3R_7766539_SNP [dm3] 3R_11940817_SNP [dm6]	G	A	7.017e^-5	0.416	INTRON Cad87A
3L	9087395	3L_9087395_SNP [dm3] 3L_9094295_SNP [dm6]	T	A	7.045e^-5	0.416	INTRON CG32032
3R	17333962	3R_17333962_SNP [dm3] 3R_21508240_SNP [dm6]	A	G	7.069e^-5	0.416	INTRON C15
2L	7262133	2L_7262133_SNP [dm3] 2L_7262133_SNP [dm6]	G	C	7.090e^-5	0.416	INTRON Wnt4	TF binding site mE1_TFBS_cad
X	18547287	X_18547287_SNP [dm3] X_18653254_SNP [dm6]	T	C	7.112e^-5	0.416	UPSTREAM Ing3 DOWNSTREAM CG6659 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	17243862	X_17243862_SNP [dm3] X_17349829_SNP [dm6]	A	G	7.165e^-5	0.416	INTERGENIC
3R	15249249	3R_15249249_SNP [dm3] 3R_19423527_SNP [dm6]	C	A	7.200e^-5	0.416	DOWNSTREAM CG3517 INTRON CG31221
2R	823717	2R_823717_SNP [dm3] 2R_4936212_SNP [dm6]	C	A	7.208e^-5	0.416	INTRON Ir41a	transposable element FlyBase
2L	8530204	2L_8530204_SNP [dm3] 2L_8530204_SNP [dm6]	A	T	7.242e^-5	0.416	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	12080929	3L_12080929_SNP [dm3] 3L_12087829_SNP [dm6]	T	A	7.248e^-5	0.416	UPSTREAM CG17154 INTERGENIC
3L	8682680	3L_8682680_SNP [dm3] 3L_8689580_SNP [dm6]	T	A	7.249e^-5	0.416	INTERGENIC
3R	16928927	3R_16928927_SNP [dm3] 3R_21103205_SNP [dm6]	A	G	7.262e^-5	0.416	INTRON CG5745	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	6204231	X_6204231_SNP [dm3] X_6310198_SNP [dm6]	G	A	7.287e^-5	0.416	INTRON CG15894
3L	2141906	3L_2141906_SNP [dm3] 3L_2141906_SNP [dm6]	T	A	7.293e^-5	0.416	INTRON zormin	TF binding site mE1_TFBS_inv
2L	8526006	2L_8526006_SNP [dm3] 2L_8526006_SNP [dm6]	T	C	7.400e^-5	0.418	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
3R	9770178	3R_9770178_SNP [dm3] 3R_13944456_SNP [dm6]	G	A	7.416e^-5	0.418	UPSTREAM Art9 DOWNSTREAM Art6 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1626814	2L_1626814_SNP [dm3] 2L_1626814_SNP [dm6]	A	T	7.423e^-5	0.418	UPSTREAM CR44603 INTERGENIC
3R	6926237	3R_6926237_SNP [dm3] 3R_11100515_SNP [dm6]	A	C	7.439e^-5	0.418	UPSTREAM CR45579 INTERGENIC
3R	6882395	3R_6882395_SNP [dm3] 3R_11056673_SNP [dm6]	C	T	7.448e^-5	0.418	INTERGENIC
2R	16931592	2R_16931592_SNP [dm3] 2R_21044087_SNP [dm6]	A	C	7.489e^-5	0.419	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7210097	2L_7210097_SNP [dm3] 2L_7210097_SNP [dm6]	T	G	7.614e^-5	0.423	INTRON CG13784
2L	4292781	2L_4292781_SNP [dm3] 2L_4292781_SNP [dm6]	A	C	7.615e^-5	0.423	INTRON tutl
3R	6888787	3R_6888787_DEL [dm3] 3R_11063065_DEL [dm6]	CAGC	C	7.621e^-5	0.423	INTERGENIC
3L	3384758	3L_3384758_SNP [dm3] 3L_3384758_SNP [dm6]	T	A	7.710e^-5	0.427	INTERGENIC
3R	14421615	3R_14421615_SNP [dm3] 3R_18595893_SNP [dm6]	C	T	7.764e^-5	0.427	INTRON qin & 1 other
3L	1366588	3L_1366588_SNP [dm3] 3L_1366588_SNP [dm6]	G	A	7.767e^-5	0.427	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	7786933	2R_7786933_SNP [dm3] 2R_11899428_SNP [dm6]	A	G	7.843e^-5	0.43	UPSTREAM Zip48C INTRON MCPH1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	19511977	3L_19511977_SNP [dm3] 3L_19518877_SNP [dm6]	T	A	7.904e^-5	0.432	UPSTREAM Cpr76Ba & 1 other INTERGENIC
2L	17291134	2L_17291134_SNP [dm3] 2L_17291134_SNP [dm6]	C	T	7.950e^-5	0.433	UTR_3_PRIME CG6380
X	16164640	X_16164640_SNP [dm3] X_16270607_SNP [dm6]	A	G	8.013e^-5	0.436	UPSTREAM Mfe2 INTRON kat80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9885268	2L_9885268_SNP [dm3] 2L_9885268_SNP [dm6]	A	T	8.049e^-5	0.436	INTRON nAChRalpha6
2R	8429437	2R_8429437_SNP [dm3] 2R_12541932_SNP [dm6]	A	T	8.081e^-5	0.436	INTRON fra
X	16745515	X_16745515_SNP [dm3] X_16851482_SNP [dm6]	C	T	8.085e^-5	0.436	INTRON CG13003
2L	14490389	2L_14490389_SNP [dm3] 2L_14490389_SNP [dm6]	A	C	8.112e^-5	0.436	UPSTREAM noc INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	18547185	X_18547185_SNP [dm3] X_18653152_SNP [dm6]	A	C	8.146e^-5	0.437	UPSTREAM Ing3 DOWNSTREAM CG6659 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	3891023	2L_3891023_SNP [dm3] 2L_3891023_SNP [dm6]	T	C	8.189e^-5	0.438	UPSTREAM capu INTRON capu
2L	8527887	2L_8527887_SNP [dm3] 2L_8527887_SNP [dm6]	C	A	8.232e^-5	0.439	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16037960	X_16037960_SNP [dm3] X_16143927_SNP [dm6]	G	A	8.282e^-5	0.44	INTRON disco-r	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8457068	2R_8457068_SNP [dm3] 2R_12569563_SNP [dm6]	T	C	8.421e^-5	0.446	SYNONYMOUS_CODING Ak6 UPSTREAM stil DOWNSTREAM Cyp301a1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	8525164	2L_8525164_SNP [dm3] 2L_8525164_SNP [dm6]	C	T	8.483e^-5	0.447	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3L	975754	3L_975754_SNP [dm3] 3L_975754_SNP [dm6]	T	C	8.493e^-5	0.447	INTRON Glut1
X	15108093	X_15108093_SNP [dm3] X_15214060_SNP [dm6]	A	G	8.506e^-5	0.447	INTERGENIC
3R	25200886	3R_25200886_SNP [dm3] 3R_29375164_SNP [dm6]	C	G	8.613e^-5	0.451	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	8251379	3L_8251379_SNP [dm3] 3L_8258279_SNP [dm6]	T	A	8.628e^-5	0.451	INTRON Dscam4
3R	20013489	3R_20013489_SNP [dm3] 3R_24187767_SNP [dm6]	G	A	8.686e^-5	0.453	UTR_3_PRIME CG5515 & 1 other	TF binding site mE1_TFBS_sens
X	6426015	X_6426015_SNP [dm3] X_6531982_SNP [dm6]	C	T	8.914e^-5	0.459	SYNONYMOUS_CODING RpL7A UPSTREAM snoRNA:Or-CD10	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3550397	2L_3550397_INS [dm3] 2L_3550397_INS [dm6]	A	AA	8.914e^-5	0.459	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6939477	2L_6939477_SNP [dm3] 2L_6939477_SNP [dm6]	G	A	8.972e^-5	0.459	INTRON CG18304	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	9261576	3L_9261576_SNP [dm3] 3L_9268476_SNP [dm6]	C	G	9.006e^-5	0.459	INTRON GluRIB
2L	2589447	2L_2589447_DEL [dm3] 2L_2589447_DEL [dm6]	CACTAGT	C	9.013e^-5	0.459	INTERGENIC
3L	9087354	3L_9087354_SNP [dm3] 3L_9094254_SNP [dm6]	T	G	9.054e^-5	0.459	INTRON CG32032
3L	9087382	3L_9087382_SNP [dm3] 3L_9094282_SNP [dm6]	A	T	9.054e^-5	0.459	INTRON CG32032
3L	9087383	3L_9087383_SNP [dm3] 3L_9094283_SNP [dm6]	A	T	9.054e^-5	0.459	INTRON CG32032
3R	10386298	3R_10386298_SNP [dm3] 3R_14560576_SNP [dm6]	C	A	9.056e^-5	0.459	UPSTREAM CG14850 & 1 other INTERGENIC
2L	2564526	2L_2564526_SNP [dm3] 2L_2564526_SNP [dm6]	G	A	9.120e^-5	0.459	SPLICE_SITE_REGION Cyp309a1 DOWNSTREAM Cyp309a2 INTRON Cyp309a1
2L	8539492	2L_8539492_SNP [dm3] 2L_8539492_SNP [dm6]	C	G	9.139e^-5	0.459	INTRON CG17834
3R	2747769	3R_2747769_SNP [dm3] 3R_6922047_SNP [dm6]	A	T	9.143e^-5	0.459	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10860522	2R_10860522_SNP [dm3] 2R_14973017_SNP [dm6]	T	A	9.169e^-5	0.459	INTRON ckn	TF binding site BDTNP1_TFBS_twi
2R	3872611	2R_3872611_SNP [dm3] 2R_7985106_SNP [dm6]	G	A	9.173e^-5	0.459	NON_SYNONYMOUS_CODING ACC
2L	13234347	2L_13234347_SNP [dm3] 2L_13234347_SNP [dm6]	G	A	9.173e^-5	0.459	SYNONYMOUS_CODING CG15479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11224244	2L_11224244_SNP [dm3] 2L_11224244_SNP [dm6]	C	T	9.242e^-5	0.461	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	20313191	2L_20313191_SNP [dm3] 2L_20313191_SNP [dm6]	C	T	9.345e^-5	0.465	INTRON spir
3R	6884698	3R_6884698_SNP [dm3] 3R_11058976_SNP [dm6]	G	A	9.362e^-5	0.465	INTERGENIC
3R	6884290	3R_6884290_SNP [dm3] 3R_11058568_SNP [dm6]	T	A	9.478e^-5	0.466	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16928803	3R_16928803_SNP [dm3] 3R_21103081_SNP [dm6]	C	T	9.493e^-5	0.466	INTRON CG5745	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7262216	2L_7262216_SNP [dm3] 2L_7262216_SNP [dm6]	G	T	9.493e^-5	0.466	INTRON Wnt4	TF binding site mE1_TFBS_cad
2L	19215034	2L_19215034_SNP [dm3] 2L_19215034_SNP [dm6]	C	A	9.494e^-5	0.466	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12335565	2L_12335565_SNP [dm3] 2L_12335565_SNP [dm6]	G	A	9.550e^-5	0.468	INTERGENIC
3R	9557591	3R_9557591_INS [dm3] 3R_13731869_INS [dm6]	A	AACTA	9.592e^-5	0.468	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10099499	3L_10099499_SNP [dm3] 3L_10106399_SNP [dm6]	A	T	9.618e^-5	0.468	INTRON dpr6	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8503747	2L_8503747_SNP [dm3] 2L_8503747_SNP [dm6]	C	A	9.626e^-5	0.468	INTRON Dh31
3L	2143436	3L_2143436_SNP [dm3] 3L_2143436_SNP [dm6]	A	C	9.714e^-5	0.469	INTRON zormin
3R	20015050	3R_20015050_SNP [dm3] 3R_24189328_SNP [dm6]	A	G	9.723e^-5	0.469	SYNONYMOUS_CODING jnj UPSTREAM CG5515	TF binding site BDTNP1_TFBS_twi
3L	3384010	3L_3384010_SNP [dm3] 3L_3384010_SNP [dm6]	T	C	9.732e^-5	0.469	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	975748	3L_975748_SNP [dm3] 3L_975748_SNP [dm6]	T	A	9.824e^-5	0.47	INTRON Glut1
2L	8509208	2L_8509208_SNP [dm3] 2L_8509208_SNP [dm6]	A	G	9.824e^-5	0.47	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
2R	10860498	2R_10860498_SNP [dm3] 2R_14972993_SNP [dm6]	C	A	9.864e^-5	0.47	INTRON ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21000337	3R_21000337_SNP [dm3] 3R_25174615_SNP [dm6]	G	A	9.879e^-5	0.47	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	723734	3L_723734_SNP [dm3] 3L_723734_SNP [dm6]	G	A	9.888e^-5	0.47	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	723751	3L_723751_SNP [dm3] 3L_723751_SNP [dm6]	T	C	9.888e^-5	0.47	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10433926	2R_10433926_SNP [dm3] 2R_14546421_SNP [dm6]	T	C	9.920e^-5	0.47	UPSTREAM CG30076 INTRON ttv
3R	17334016	3R_17334016_SNP [dm3] 3R_21508294_SNP [dm6]	T	A	1.001e^-4	0.472	INTRON C15
3L	9087524	3L_9087524_SNP [dm3] 3L_9094424_SNP [dm6]	G	A	1.002e^-4	0.472	INTRON CG32032
3R	19173747	3R_19173747_SNP [dm3] 3R_23348025_SNP [dm6]	T	C	1.008e^-4	0.472	UPSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8528677	2L_8528677_SNP [dm3] 2L_8528677_SNP [dm6]	A	T	1.010e^-4	0.472	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
3R	6926224	3R_6926224_SNP [dm3] 3R_11100502_SNP [dm6]	T	C	1.011e^-4	0.472	UPSTREAM CR45579 INTERGENIC
3R	17325574	3R_17325574_SNP [dm3] 3R_21499852_SNP [dm6]	G	A	1.011e^-4	0.472	UPSTREAM C15 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4579202	3L_4579202_SNP [dm3] 3L_4579202_SNP [dm6]	A	T	1.029e^-4	0.473	INTRON CG42540
2L	12257020	2L_12257020_SNP [dm3] 2L_12257020_SNP [dm6]	A	G	1.030e^-4	0.473	INTRON aret
3L	9087348	3L_9087348_SNP [dm3] 3L_9094248_SNP [dm6]	T	A	1.032e^-4	0.473	INTRON CG32032
2L	3244729	2L_3244729_SNP [dm3] 2L_3244729_SNP [dm6]	A	G	1.032e^-4	0.473	INTERGENIC
2L	10869221	2L_10869221_SNP [dm3] 2L_10869221_SNP [dm6]	C	T	1.034e^-4	0.473	UPSTREAM CG12517 INTERGENIC
3R	22842822	3R_22842822_SNP [dm3] 3R_27017100_SNP [dm6]	T	G	1.036e^-4	0.473	DOWNSTREAM CG17192 INTRON RYa-R	TF binding site mE1_TFBS_cad
X	6104017	X_6104017_SNP [dm3] X_6209984_SNP [dm6]	C	T	1.036e^-4	0.473	INTERGENIC
3R	19170975	3R_19170975_SNP [dm3] 3R_23345253_SNP [dm6]	C	A	1.038e^-4	0.473	INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	2818581	3L_2818581_SNP [dm3] 3L_2818581_SNP [dm6]	T	C	1.038e^-4	0.473	INTRON CG43444
3R	21361197	3R_21361197_SNP [dm3] 3R_25535475_SNP [dm6]	T	C	1.039e^-4	0.473	INTRON msi
3R	6884674	3R_6884674_SNP [dm3] 3R_11058952_SNP [dm6]	G	A	1.041e^-4	0.473	INTERGENIC
3L	10099526	3L_10099526_SNP [dm3] 3L_10106426_SNP [dm6]	A	T	1.052e^-4	0.477	INTRON dpr6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8530717	2L_8530717_SNP [dm3] 2L_8530717_SNP [dm6]	A	T	1.064e^-4	0.48	INTRON CG17834
2L	8528781	2L_8528781_SNP [dm3] 2L_8528781_SNP [dm6]	G	C	1.065e^-4	0.48	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20568844	3R_20568844_SNP [dm3] 3R_24743122_SNP [dm6]	T	A	1.075e^-4	0.483	INTRON tok
3L	10934586	3L_10934586_SNP [dm3] 3L_10941486_SNP [dm6]	T	C	1.077e^-4	0.483	INTERGENIC
3L	3384994	3L_3384994_SNP [dm3] 3L_3384994_SNP [dm6]	T	G	1.085e^-4	0.485	INTERGENIC
2L	4292762	2L_4292762_SNP [dm3] 2L_4292762_SNP [dm6]	A	T	1.088e^-4	0.486	INTRON tutl
X	3797243	X_3797243_SNP [dm3] X_3903210_SNP [dm6]	A	T	1.113e^-4	0.496	INTRON CG42541
3R	23651135	3R_23651135_SNP [dm3] 3R_27825413_SNP [dm6]	C	G	1.123e^-4	0.498	INTRON CG34353
2R	8429451	2R_8429451_SNP [dm3] 2R_12541946_SNP [dm6]	A	T	1.125e^-4	0.498	INTRON fra
2L	10869274	2L_10869274_SNP [dm3] 2L_10869274_SNP [dm6]	G	T	1.126e^-4	0.498	UPSTREAM CG12517 INTERGENIC
3R	24676759	3R_24676759_SNP [dm3] 3R_28851037_SNP [dm6]	T	C	1.132e^-4	0.5	INTRON spg
3R	16928799	3R_16928799_SNP [dm3] 3R_21103077_SNP [dm6]	G	A	1.139e^-4	0.501	INTRON CG5745	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16844314	X_16844314_SNP [dm3] X_16950281_SNP [dm6]	C	T	1.141e^-4	0.501	INTRON RhoGAP15B
2R	7784239	2R_7784239_SNP [dm3] 2R_11896734_SNP [dm6]	T	A	1.146e^-4	0.502	SYNONYMOUS_CODING MCPH1 DOWNSTREAM Ef1alpha48D & 1 other
3R	17655330	3R_17655330_SNP [dm3] 3R_21829608_SNP [dm6]	G	T	1.154e^-4	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	21062249	X_21062249_SNP [dm3] X_21191222_SNP [dm6]	C	T	1.157e^-4	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8251343	3L_8251343_SNP [dm3] 3L_8258243_SNP [dm6]	G	A	1.171e^-4	0.507	INTRON Dscam4
3L	3255154	3L_3255154_INS [dm3] 3L_3255154_INS [dm6]	C	CCC	1.171e^-4	0.507	DOWNSTREAM CR43626 INTERGENIC
3R	1058943	3R_1058943_SNP [dm3] 3R_5233221_SNP [dm6]	T	C	1.172e^-4	0.507	INTRON Mms19	TF binding site BDTNP1_TFBS_dl
3L	3384376	3L_3384376_SNP [dm3] 3L_3384376_SNP [dm6]	A	G	1.176e^-4	0.507	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	20325747	3R_20325747_SNP [dm3] 3R_24500025_SNP [dm6]	G	A	1.177e^-4	0.507	INTERGENIC
3L	15367623	3L_15367623_SNP [dm3] 3L_15374523_SNP [dm6]	G	A	1.178e^-4	0.507	INTERGENIC
3L	1174256	3L_1174256_SNP [dm3] 3L_1174256_SNP [dm6]	C	T	1.183e^-4	0.508	NON_SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8528755	2L_8528755_SNP [dm3] 2L_8528755_SNP [dm6]	A	G	1.191e^-4	0.51	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17678522	X_17678522_SNP [dm3] X_17784489_SNP [dm6]	T	C	1.201e^-4	0.513	INTERGENIC
3R	20606786	3R_20606786_SNP [dm3] 3R_24781064_SNP [dm6]	G	A	1.203e^-4	0.513	INTRON CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	15255222	2R_15255222_SNP [dm3] 2R_19367717_SNP [dm6]	C	T	1.219e^-4	0.518	SYNONYMOUS_CODING CG9416 DOWNSTREAM CG10051
3L	3954745	3L_3954745_SNP [dm3] 3L_3954745_SNP [dm6]	G	C	1.229e^-4	0.519	UTR_3_PRIME CG12605
X	18560656	X_18560656_SNP [dm3] X_18666623_SNP [dm6]	T	C	1.229e^-4	0.519	EXON CR45514	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	6926232	3R_6926232_SNP [dm3] 3R_11100510_SNP [dm6]	A	C	1.232e^-4	0.519	UPSTREAM CR45579 INTERGENIC
3L	7688049	3L_7688049_SNP [dm3] 3L_7694949_SNP [dm6]	C	T	1.240e^-4	0.519	INTRON CG32373 & 2 others
3R	14421595	3R_14421595_SNP [dm3] 3R_18595873_SNP [dm6]	G	C	1.244e^-4	0.519	INTRON qin & 1 other
3R	20739422	3R_20739422_SNP [dm3] 3R_24913700_SNP [dm6]	T	A	1.246e^-4	0.519	DOWNSTREAM CR44267 INTRON PIG-S
2L	2057329	2L_2057329_SNP [dm3] 2L_2057329_SNP [dm6]	G	T	1.248e^-4	0.519	INTRON Or22c
X	2479483	X_2479483_SNP [dm3] X_2585450_SNP [dm6]	T	A	1.251e^-4	0.519	UPSTREAM wds & 1 other INTRON CG13760	TF binding site BDTNP1_TFBS_dl
2R	19542607	2R_19542607_SNP [dm3] 2R_23655084_SNP [dm6]	T	A	1.251e^-4	0.519	DOWNSTREAM retn INTERGENIC
3R	21361196	3R_21361196_SNP [dm3] 3R_25535474_SNP [dm6]	G	A	1.252e^-4	0.519	INTRON msi
2R	10684785	2R_10684785_SNP [dm3] 2R_14797280_SNP [dm6]	T	A	1.254e^-4	0.519	UPSTREAM kn INTRON kn
2L	17291109	2L_17291109_SNP [dm3] 2L_17291109_SNP [dm6]	A	T	1.257e^-4	0.519	UTR_3_PRIME CG6380 DOWNSTREAM CG6380
X	21065816	X_21065816_SNP [dm3] X_21194789_SNP [dm6]	A	C	1.257e^-4	0.519	DOWNSTREAM CG14579 INTERGENIC
3L	1444133	3L_1444133_INS [dm3] 3L_1444133_INS [dm6]	T	TT	1.260e^-4	0.519	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4031912	3R_4031912_SNP [dm3] 3R_8206190_SNP [dm6]	G	C	1.264e^-4	0.52	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11963898	2R_11963898_SNP [dm3] 2R_16076393_SNP [dm6]	C	T	1.270e^-4	0.521	INTERGENIC
2L	8540525	2L_8540525_SNP [dm3] 2L_8540525_SNP [dm6]	G	C	1.272e^-4	0.521	SYNONYMOUS_CODING CG17834	TF binding site BDTNP1_TFBS_twi
3R	22930045	3R_22930045_SNP [dm3] 3R_27104323_SNP [dm6]	T	G	1.280e^-4	0.523	SYNONYMOUS_CODING CG6074
2L	17291169	2L_17291169_SNP [dm3] 2L_17291169_SNP [dm6]	G	A	1.290e^-4	0.523	UTR_3_PRIME CG6380
3L	14997683	3L_14997683_SNP [dm3] 3L_15004583_SNP [dm6]	T	A	1.290e^-4	0.523	INTRON Reck
3L	14997685	3L_14997685_SNP [dm3] 3L_15004585_SNP [dm6]	G	A	1.290e^-4	0.523	INTRON Reck
3L	14997686	3L_14997686_SNP [dm3] 3L_15004586_SNP [dm6]	G	C	1.290e^-4	0.523	INTRON Reck
3R	6904313	3R_6904313_SNP [dm3] 3R_11078591_SNP [dm6]	G	T	1.298e^-4	0.524	INTERGENIC
3R	1531784	3R_1531784_SNP [dm3] 3R_5706062_SNP [dm6]	T	A	1.302e^-4	0.524	UPSTREAM plx INTRON plx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14364249	3R_14364249_INS [dm3] 3R_18538527_INS [dm6]	T	TAC	1.304e^-4	0.524	INTRON fru
X	3342853	X_3342853_DEL [dm3] X_3448820_DEL [dm6]	TAAT	T	1.308e^-4	0.524	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	16213397	3L_16213397_SNP [dm3] 3L_16220297_SNP [dm6]	A	G	1.311e^-4	0.524	INTERGENIC
X	17472300	X_17472300_SNP [dm3] X_17578267_SNP [dm6]	G	T	1.311e^-4	0.524	UPSTREAM CR44124 INTRON l_1_G0222	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	12822168	2L_12822168_DEL [dm3] 2L_12822168_DEL [dm6]	CAA	GC	1.314e^-4	0.525	UTR_5_PRIME kek1	TF binding site BDTNP1_TFBS_dl
3L	2032295	3L_2032295_SNP [dm3] 3L_2032295_SNP [dm6]	T	A	1.320e^-4	0.525	INTERGENIC
3L	2739003	3L_2739003_SNP [dm3] 3L_2739003_SNP [dm6]	G	C	1.322e^-4	0.525	UPSTREAM Acp62F INTRON Mrtf
3L	9220360	3L_9220360_SNP [dm3] 3L_9227260_SNP [dm6]	C	G	1.326e^-4	0.525	INTERGENIC
2L	15897258	2L_15897258_SNP [dm3] 2L_15897258_SNP [dm6]	T	C	1.331e^-4	0.525	DOWNSTREAM CG31735 INTERGENIC
3R	9666016	3R_9666016_SNP [dm3] 3R_13840294_SNP [dm6]	A	C	1.333e^-4	0.525	UPSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8531564	2L_8531564_SNP [dm3] 2L_8531564_SNP [dm6]	A	G	1.337e^-4	0.525	INTRON CG17834
2L	17291202	2L_17291202_SNP [dm3] 2L_17291202_SNP [dm6]	C	A	1.341e^-4	0.525	UTR_3_PRIME CG6380
2L	2564623	2L_2564623_SNP [dm3] 2L_2564623_SNP [dm6]	T	C	1.341e^-4	0.525	NON_SYNONYMOUS_CODING Cyp309a1 DOWNSTREAM Cyp309a2
2L	1795772	2L_1795772_SNP [dm3] 2L_1795772_SNP [dm6]	C	T	1.343e^-4	0.525	UPSTREAM Gr22a INTERGENIC
3R	17334864	3R_17334864_SNP [dm3] 3R_21509142_SNP [dm6]	T	G	1.345e^-4	0.525	INTRON C15	TF binding site BDTNP1_TFBS_dl
2L	4434610	2L_4434610_SNP [dm3] 2L_4434610_SNP [dm6]	T	A	1.349e^-4	0.525	INTRON CG15431 & 2 others
3L	14997682	3L_14997682_SNP [dm3] 3L_15004582_SNP [dm6]	T	C	1.350e^-4	0.525	INTRON Reck
2R	11880770	2R_11880770_SNP [dm3] 2R_15993265_SNP [dm6]	G	C	1.358e^-4	0.528	SYNONYMOUS_CODING CG8320 UPSTREAM Pex11 DOWNSTREAM ATPCL	TF binding site mE1_TFBS_sens
2R	10951136	2R_10951136_SNP [dm3] 2R_15063631_SNP [dm6]	C	T	1.370e^-4	0.53	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	6265541	3R_6265541_SNP [dm3] 3R_10439819_SNP [dm6]	A	G	1.386e^-4	0.53	INTERGENIC
3L	14997656	3L_14997656_DEL [dm3] 3L_15004556_DEL [dm6]	TAGCAA	T	1.391e^-4	0.53	INTRON Reck
3L	14997663	3L_14997663_SNP [dm3] 3L_15004563_SNP [dm6]	C	T	1.391e^-4	0.53	INTRON Reck
3L	14997671	3L_14997671_DEL [dm3] 3L_15004571_DEL [dm6]	CGTAT	C	1.391e^-4	0.53	INTRON Reck
3L	14997700	3L_14997700_SNP [dm3] 3L_15004600_SNP [dm6]	T	G	1.391e^-4	0.53	INTRON Reck
X	17243818	X_17243818_SNP [dm3] X_17349785_SNP [dm6]	A	T	1.392e^-4	0.53	INTERGENIC
2R	5608061	2R_5608061_SNP [dm3] 2R_9720556_SNP [dm6]	A	T	1.393e^-4	0.53	INTRON sqa
2R	10860529	2R_10860529_SNP [dm3] 2R_14973024_SNP [dm6]	G	A	1.394e^-4	0.53	INTRON ckn	TF binding site BDTNP1_TFBS_twi
2L	16510604	2L_16510604_SNP [dm3] 2L_16510604_SNP [dm6]	C	T	1.394e^-4	0.53	SYNONYMOUS_CODING CG5953	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19398584	2R_19398584_SNP [dm3] 2R_23511061_SNP [dm6]	A	G	1.405e^-4	0.531	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
2L	8484577	2L_8484577_SNP [dm3] 2L_8484577_SNP [dm6]	T	A	1.409e^-4	0.531	INTRON d	TF binding site mE1_TFBS_chinmo
3R	19825851	3R_19825851_SNP [dm3] 3R_24000129_SNP [dm6]	C	A	1.410e^-4	0.531	INTRON KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1819941	2L_1819941_SNP [dm3] 2L_1819941_SNP [dm6]	A	C	1.411e^-4	0.531	INTERGENIC
3L	1477831	3L_1477831_SNP [dm3] 3L_1477831_SNP [dm6]	G	A	1.411e^-4	0.531	SYNONYMOUS_CODING robl62A INTRON stet
3L	16138276	3L_16138276_DEL [dm3] 3L_16145176_DEL [dm6]	CAATATTTCCCTTC...	C	1.412e^-4	0.531	INTRON CG5151
3L	1239894	3L_1239894_SNP [dm3] 3L_1239894_SNP [dm6]	G	A	1.419e^-4	0.532	SYNONYMOUS_CODING CG9194	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	16164514	X_16164514_SNP [dm3] X_16270481_SNP [dm6]	A	G	1.420e^-4	0.532	SYNONYMOUS_CODING kat80 UPSTREAM Mfe2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	3383421	3L_3383421_SNP [dm3] 3L_3383421_SNP [dm6]	G	A	1.424e^-4	0.532	INTERGENIC
3L	14997647	3L_14997647_DEL [dm3] 3L_15004547_DEL [dm6]	AAATAC	G	1.431e^-4	0.533	INTRON Reck
3L	14997669	3L_14997669_SNP [dm3] 3L_15004569_SNP [dm6]	A	T	1.434e^-4	0.533	INTRON Reck
3R	7529810	3R_7529810_SNP [dm3] 3R_11704088_SNP [dm6]	A	C	1.451e^-4	0.539	NON_SYNONYMOUS_CODING I-t
2R	5608083	2R_5608083_SNP [dm3] 2R_9720578_SNP [dm6]	G	T	1.456e^-4	0.54	INTRON sqa
2R	2735718	2R_2735718_SNP [dm3] 2R_6848213_SNP [dm6]	A	G	1.461e^-4	0.541	INTERGENIC
3R	6884177	3R_6884177_DEL [dm3] 3R_11058455_DEL [dm6]	CAGCACGCCACAGC...	C	1.472e^-4	0.543	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8004193	2L_8004193_SNP [dm3] 2L_8004193_SNP [dm6]	A	G	1.473e^-4	0.543	UTR_5_PRIME Wwox DOWNSTREAM Spn28Dc
X	8966291	X_8966291_SNP [dm3] X_9072258_SNP [dm6]	G	T	1.481e^-4	0.544	UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
3R	19617956	3R_19617956_SNP [dm3] 3R_23792234_SNP [dm6]	G	C	1.481e^-4	0.544	INTRON mbc
3L	14997654	3L_14997654_SNP [dm3] 3L_15004554_SNP [dm6]	A	G	1.495e^-4	0.546	INTRON Reck
3L	8435979	3L_8435979_INS [dm3] 3L_8442879_INS [dm6]	G	GTTTCTCAATCAAGAAG...	1.495e^-4	0.546	UPSTREAM Unr DOWNSTREAM CG6983 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21299661	3R_21299661_SNP [dm3] 3R_25473939_SNP [dm6]	C	A	1.496e^-4	0.546	SYNONYMOUS_CODING Vps33B UPSTREAM Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	7606455	2L_7606455_SNP [dm3] 2L_7606455_SNP [dm6]	T	C	1.499e^-4	0.546	SYNONYMOUS_CODING Cyp4d21
3R	17888686	3R_17888686_SNP [dm3] 3R_22062964_SNP [dm6]	C	T	1.501e^-4	0.546	INTRON how
2R	13429506	2R_13429506_SNP [dm3] 2R_17542001_SNP [dm6]	C	G	1.506e^-4	0.546	SYNONYMOUS_CODING CG43370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13840635	3R_13840635_SNP [dm3] 3R_18014913_SNP [dm6]	T	C	1.508e^-4	0.546	UTR_3_PRIME cpo DOWNSTREAM cpo
3L	16668839	3L_16668839_SNP [dm3] 3L_16675739_SNP [dm6]	G	A	1.510e^-4	0.546	SYNONYMOUS_CODING CG13032 DOWNSTREAM Lasp	TF binding site mE1_TFBS_inv
X	2479477	X_2479477_SNP [dm3] X_2585444_SNP [dm6]	T	A	1.514e^-4	0.546	UPSTREAM wds & 1 other INTRON CG13760	TF binding site BDTNP1_TFBS_dl
2R	12537473	2R_12537473_SNP [dm3] 2R_16649968_SNP [dm6]	T	C	1.519e^-4	0.546	UTR_3_PRIME gprs INTRON gprs
3R	16085006	3R_16085006_SNP [dm3] 3R_20259284_SNP [dm6]	C	T	1.520e^-4	0.546	INTRON cic
2R	11716692	2R_11716692_SNP [dm3] 2R_15829187_SNP [dm6]	T	C	1.529e^-4	0.546	INTRON tun & 1 other
3L	3925979	3L_3925979_SNP [dm3] 3L_3925979_SNP [dm6]	C	T	1.531e^-4	0.546	UPSTREAM Eip63F-1 INTRON Eip63F-1
X	16844977	X_16844977_SNP [dm3] X_16950944_SNP [dm6]	T	C	1.532e^-4	0.546	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
X	17194465	X_17194465_SNP [dm3] X_17300432_SNP [dm6]	G	C	1.534e^-4	0.546	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	2735338	2R_2735338_SNP [dm3] 2R_6847833_SNP [dm6]	G	A	1.535e^-4	0.546	INTERGENIC
2L	8004062	2L_8004062_SNP [dm3] 2L_8004062_SNP [dm6]	A	C	1.541e^-4	0.547	DOWNSTREAM Spn28Dc INTRON Wwox
3L	3954740	3L_3954740_SNP [dm3] 3L_3954740_SNP [dm6]	A	C	1.545e^-4	0.548	UTR_3_PRIME CG12605
3R	9495075	3R_9495075_SNP [dm3] 3R_13669353_SNP [dm6]	T	G	1.555e^-4	0.548	INTRON Task6
2R	7786717	2R_7786717_SNP [dm3] 2R_11899212_SNP [dm6]	A	T	1.560e^-4	0.548	UPSTREAM Zip48C INTRON MCPH1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14978662	3R_14978662_SNP [dm3] 3R_19152940_SNP [dm6]	G	T	1.564e^-4	0.548	INTRON CG5835
3L	3384002	3L_3384002_SNP [dm3] 3L_3384002_SNP [dm6]	C	T	1.567e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11980274	2R_11980274_SNP [dm3] 2R_16092769_SNP [dm6]	C	A	1.568e^-4	0.548	INTRON Dg
3R	6249274	3R_6249274_SNP [dm3] 3R_10423552_SNP [dm6]	T	C	1.569e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_cad
3R	2515999	3R_2515999_SNP [dm3] 3R_6690277_SNP [dm6]	T	A	1.576e^-4	0.548	UPSTREAM Ccp84Af DOWNSTREAM Ccp84Ae INTERGENIC
2R	7785142	2R_7785142_SNP [dm3] 2R_11897637_SNP [dm6]	G	A	1.578e^-4	0.548	SYNONYMOUS_CODING MCPH1	TF binding site mE1_TFBS_sens
3R	24786194	3R_24786194_SNP [dm3] 3R_28960472_SNP [dm6]	A	C	1.578e^-4	0.548	INTRON CG14521
3L	11526662	3L_11526662_SNP [dm3] 3L_11533562_SNP [dm6]	G	T	1.585e^-4	0.548	INTRON Mob2
X	16844297	X_16844297_SNP [dm3] X_16950264_SNP [dm6]	G	A	1.586e^-4	0.548	INTRON RhoGAP15B
2L	5490137	2L_5490137_SNP [dm3] 2L_5490137_SNP [dm6]	C	T	1.586e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8203291	2L_8203291_SNP [dm3] 2L_8203291_SNP [dm6]	C	T	1.588e^-4	0.548	INTRON CR44119 & 1 other
2L	8203294	2L_8203294_SNP [dm3] 2L_8203294_SNP [dm6]	G	T	1.588e^-4	0.548	INTRON CR44119 & 1 other
3L	1174261	3L_1174261_SNP [dm3] 3L_1174261_SNP [dm6]	C	A	1.590e^-4	0.548	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5197312	X_5197312_SNP [dm3] X_5303279_SNP [dm6]	G	A	1.594e^-4	0.549	SYNONYMOUS_CODING CG3323 DOWNSTREAM CG42749 INTRON CG42749
2L	6005978	2L_6005978_SNP [dm3] 2L_6005978_SNP [dm6]	A	G	1.599e^-4	0.549	SYNONYMOUS_CODING Gal EXON CR43866
X	8966295	X_8966295_SNP [dm3] X_9072262_SNP [dm6]	A	G	1.608e^-4	0.55	UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
3L	5169514	3L_5169514_SNP [dm3] 3L_5176414_SNP [dm6]	G	A	1.609e^-4	0.55	INTRON shep
3R	9498329	3R_9498329_SNP [dm3] 3R_13672607_SNP [dm6]	A	T	1.611e^-4	0.55	UTR_5_PRIME Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11526671	3L_11526671_SNP [dm3] 3L_11533571_SNP [dm6]	T	C	1.619e^-4	0.552	INTRON Mob2
2L	8004065	2L_8004065_SNP [dm3] 2L_8004065_SNP [dm6]	A	T	1.624e^-4	0.552	DOWNSTREAM Spn28Dc INTRON Wwox
3L	9086698	3L_9086698_SNP [dm3] 3L_9093598_SNP [dm6]	C	G	1.626e^-4	0.552	INTRON CG32032
2R	805594	2R_805594_SNP [dm3] 2R_4918089_SNP [dm6]	A	T	1.627e^-4	0.552	INTRON Ir41a
2L	1531022	2L_1531022_SNP [dm3] 2L_1531022_SNP [dm6]	A	G	1.637e^-4	0.552	INTERGENIC
2L	8528681	2L_8528681_DEL [dm3] 2L_8528681_DEL [dm6]	ACATG	A	1.637e^-4	0.552	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
3R	6249305	3R_6249305_DEL [dm3] 3R_10423583_DEL [dm6]	CA	C	1.640e^-4	0.552	INTERGENIC	TF binding site mE1_TFBS_cad
2R	5608051	2R_5608051_SNP [dm3] 2R_9720546_SNP [dm6]	A	T	1.645e^-4	0.552	INTRON sqa
3R	15061025	3R_15061025_SNP [dm3] 3R_19235303_SNP [dm6]	A	G	1.648e^-4	0.552	INTRON unc79
2R	7950569	2R_7950569_SNP [dm3] 2R_12063064_SNP [dm6]	A	T	1.653e^-4	0.552	DOWNSTREAM Drep-3 INTERGENIC
2L	8004199	2L_8004199_SNP [dm3] 2L_8004199_SNP [dm6]	T	G	1.653e^-4	0.552	UTR_5_PRIME Wwox DOWNSTREAM Spn28Dc
2R	19042050	2R_19042050_SNP [dm3] 2R_23154527_SNP [dm6]	C	T	1.656e^-4	0.552	INTRON CG9899
X	18565934	X_18565934_DEL [dm3] X_18671901_DEL [dm6]	CACAC	C	1.657e^-4	0.552	INTERGENIC
2L	5225563	2L_5225563_SNP [dm3] 2L_5225563_SNP [dm6]	G	A	1.658e^-4	0.552	INTRON tkv
X	8208710	X_8208710_SNP [dm3] X_8314677_SNP [dm6]	A	C	1.664e^-4	0.553	INTRON nAChRalpha3
2L	17291200	2L_17291200_SNP [dm3] 2L_17291200_SNP [dm6]	T	C	1.669e^-4	0.554	UTR_3_PRIME CG6380
3L	15367575	3L_15367575_SNP [dm3] 3L_15374475_SNP [dm6]	C	T	1.684e^-4	0.558	INTERGENIC
X	7746109	X_7746109_SNP [dm3] X_7852076_SNP [dm6]	G	A	1.696e^-4	0.56	DOWNSTREAM CG10920 INTERGENIC
2R	18363811	2R_18363811_SNP [dm3] 2R_22476306_SNP [dm6]	T	C	1.707e^-4	0.56	UTR_5_PRIME CG45062 DOWNSTREAM CG45063
3R	7133704	3R_7133704_DEL [dm3] 3R_11307982_DEL [dm6]	TACAAAT	T	1.710e^-4	0.56	INTERGENIC
3L	13937668	3L_13937668_SNP [dm3] 3L_13944568_SNP [dm6]	T	C	1.710e^-4	0.56	INTRON CG32137
3L	15367622	3L_15367622_SNP [dm3] 3L_15374522_SNP [dm6]	T	A	1.718e^-4	0.56	INTERGENIC
3L	15367626	3L_15367626_SNP [dm3] 3L_15374526_SNP [dm6]	T	C	1.718e^-4	0.56	INTERGENIC
3L	11087496	3L_11087496_DEL [dm3] 3L_11094396_DEL [dm6]	TTT	T	1.719e^-4	0.56	UTR_5_PRIME CG6279 INTRON CG6279	TF binding site mE1_TFBS_chinmo
2L	1819956	2L_1819956_DEL [dm3] 2L_1819956_DEL [dm6]	AT	C	1.720e^-4	0.56	INTERGENIC
2L	19210715	2L_19210715_SNP [dm3] 2L_19210715_SNP [dm6]	T	A	1.723e^-4	0.56	INTERGENIC
2R	11838206	2R_11838206_SNP [dm3] 2R_15950701_SNP [dm6]	C	T	1.723e^-4	0.56	UTR_5_PRIME Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18130630	3R_18130630_SNP [dm3] 3R_22304908_SNP [dm6]	A	G	1.724e^-4	0.56	DOWNSTREAM CG7084 INTERGENIC
2L	8507797	2L_8507797_MNP [dm3] 2L_8507797_MNP [dm6]	AAT	TCC	1.739e^-4	0.564	UPSTREAM Dh31 INTERGENIC
3L	2143394	3L_2143394_SNP [dm3] 3L_2143394_SNP [dm6]	C	T	1.741e^-4	0.564	INTRON zormin
X	17623571	X_17623571_SNP [dm3] X_17729538_SNP [dm6]	A	T	1.744e^-4	0.564	INTRON CG42684
3R	13057644	3R_13057644_SNP [dm3] 3R_17231922_SNP [dm6]	G	C	1.756e^-4	0.566	DOWNSTREAM beat-IIb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	14471217	3L_14471217_SNP [dm3] 3L_14478117_SNP [dm6]	T	C	1.757e^-4	0.566	INTRON bbg
2L	1255669	2L_1255669_SNP [dm3] 2L_1255669_SNP [dm6]	T	A	1.759e^-4	0.566	UPSTREAM robo3 INTERGENIC
X	17243821	X_17243821_SNP [dm3] X_17349788_SNP [dm6]	C	G	1.776e^-4	0.568	INTERGENIC
X	17243824	X_17243824_INS [dm3] X_17349791_INS [dm6]	GAC	ATTTGG	1.776e^-4	0.568	INTERGENIC
X	17243829	X_17243829_SNP [dm3] X_17349796_SNP [dm6]	A	G	1.776e^-4	0.568	INTERGENIC
X	17243835	X_17243835_SNP [dm3] X_17349802_SNP [dm6]	G	A	1.776e^-4	0.568	INTERGENIC
2L	12876442	2L_12876442_SNP [dm3] 2L_12876442_SNP [dm6]	T	C	1.785e^-4	0.569	INTERGENIC	TF binding site mE1_TFBS_HSA
X	17243833	X_17243833_SNP [dm3] X_17349800_SNP [dm6]	C	T	1.789e^-4	0.57	INTERGENIC
X	16844310	X_16844310_SNP [dm3] X_16950277_SNP [dm6]	T	C	1.798e^-4	0.571	INTRON RhoGAP15B
2L	15810485	2L_15810485_SNP [dm3] 2L_15810485_SNP [dm6]	T	C	1.803e^-4	0.571	UPSTREAM CR44602 DOWNSTREAM CG42876 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	15367581	3L_15367581_SNP [dm3] 3L_15374481_SNP [dm6]	G	A	1.803e^-4	0.571	INTERGENIC
3R	11461257	3R_11461257_SNP [dm3] 3R_15635535_SNP [dm6]	G	T	1.809e^-4	0.572	NON_SYNONYMOUS_CODING CG43335
3R	18436141	3R_18436141_SNP [dm3] 3R_22610419_SNP [dm6]	T	C	1.813e^-4	0.572	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9853029	3L_9853029_SNP [dm3] 3L_9859929_SNP [dm6]	G	A	1.820e^-4	0.574	UPSTREAM CG10809 DOWNSTREAM iPLA2-VIA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2R	824728	2R_824728_SNP [dm3] 2R_4937223_SNP [dm6]	G	A	1.836e^-4	0.578	INTRON Ir41a	transposable element FlyBase
3R	18150474	3R_18150474_DEL [dm3] 3R_22324752_DEL [dm6]	AACAGCA	A	1.839e^-4	0.578	UPSTREAM CG34377 INTERGENIC
2R	18261102	2R_18261102_SNP [dm3] 2R_22373597_SNP [dm6]	A	T	1.844e^-4	0.578	UPSTREAM Liprin-gamma DOWNSTREAM CR44759 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19075114	3R_19075114_SNP [dm3] 3R_23249392_SNP [dm6]	A	C	1.847e^-4	0.578	UPSTREAM CG4467 DOWNSTREAM CG4449 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	14364248	3R_14364248_SNP [dm3] 3R_18538526_SNP [dm6]	T	A	1.867e^-4	0.582	INTRON fru
2L	12257019	2L_12257019_SNP [dm3] 2L_12257019_SNP [dm6]	A	G	1.872e^-4	0.582	INTRON aret
X	2479617	X_2479617_SNP [dm3] X_2585584_SNP [dm6]	A	T	1.873e^-4	0.582	UPSTREAM wds & 1 other INTRON CG13760	TF binding site BDTNP1_TFBS_dl
3L	3384985	3L_3384985_SNP [dm3] 3L_3384985_SNP [dm6]	G	C	1.876e^-4	0.582	INTERGENIC
3L	15367640	3L_15367640_SNP [dm3] 3L_15374540_SNP [dm6]	A	G	1.880e^-4	0.582	INTERGENIC
2L	9885191	2L_9885191_SNP [dm3] 2L_9885191_SNP [dm6]	G	C	1.880e^-4	0.582	INTRON nAChRalpha6
2R	16949408	2R_16949408_SNP [dm3] 2R_21061903_SNP [dm6]	C	A	1.883e^-4	0.582	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54	TF binding site mE1_TFBS_HSA
3L	1174263	3L_1174263_SNP [dm3] 3L_1174263_SNP [dm6]	T	C	1.884e^-4	0.582	NON_SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14421573	3R_14421573_SNP [dm3] 3R_18595851_SNP [dm6]	C	T	1.887e^-4	0.582	INTRON qin & 1 other
2L	3828039	2L_3828039_SNP [dm3] 2L_3828039_SNP [dm6]	G	T	1.893e^-4	0.583	DOWNSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	12537448	2R_12537448_SNP [dm3] 2R_16649943_SNP [dm6]	C	T	1.905e^-4	0.586	UTR_3_PRIME gprs INTRON gprs
2R	7728342	2R_7728342_SNP [dm3] 2R_11840837_SNP [dm6]	G	C	1.920e^-4	0.589	UPSTREAM CG34229 INTERGENIC
X	3799500	X_3799500_SNP [dm3] X_3905467_SNP [dm6]	C	T	1.923e^-4	0.589	INTRON CG42541
3L	15367580	3L_15367580_SNP [dm3] 3L_15374480_SNP [dm6]	A	G	1.925e^-4	0.589	INTERGENIC
2L	8203286	2L_8203286_SNP [dm3] 2L_8203286_SNP [dm6]	A	G	1.937e^-4	0.591	INTRON CR44119 & 1 other
2L	19795834	2L_19795834_SNP [dm3] 2L_19795834_SNP [dm6]	A	G	1.937e^-4	0.591	UTR_5_PRIME fs_2_ltoPP43 UPSTREAM sick	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4296669	2L_4296669_SNP [dm3] 2L_4296669_SNP [dm6]	C	T	1.944e^-4	0.592	INTRON tutl
X	18798335	X_18798335_SNP [dm3] X_18904302_SNP [dm6]	A	T	1.951e^-4	0.593	INTRON CG7378
2R	7785320	2R_7785320_SNP [dm3] 2R_11897815_SNP [dm6]	A	G	1.958e^-4	0.594	NON_SYNONYMOUS_CODING MCPH1	TF binding site mE1_TFBS_sens
2R	7721807	2R_7721807_SNP [dm3] 2R_11834302_SNP [dm6]	T	A	1.969e^-4	0.595	INTRON Sobp
2R	6721968	2R_6721968_SNP [dm3] 2R_10834463_SNP [dm6]	G	T	1.969e^-4	0.595	UPSTREAM CG12344 INTRON CG12344
X	14519600	X_14519600_SNP [dm3] X_14625567_SNP [dm6]	T	C	1.973e^-4	0.595	INTRON NetA
2L	8533459	2L_8533459_SNP [dm3] 2L_8533459_SNP [dm6]	A	G	1.977e^-4	0.595	INTRON CG17834	TF binding site mE1_TFBS_cad
3L	2477898	3L_2477898_SNP [dm3] 3L_2477898_SNP [dm6]	G	A	1.978e^-4	0.595	SYNONYMOUS_CODING Cyp4d20 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9338318	X_9338318_SNP [dm3] X_9444285_SNP [dm6]	G	A	1.981e^-4	0.596	INTRON mgl
2R	8189420	2R_8189420_SNP [dm3] 2R_12301915_SNP [dm6]	C	G	1.992e^-4	0.597	DOWNSTREAM SIP2 INTRON CG8850
3L	14213219	3L_14213219_SNP [dm3] 3L_14220119_SNP [dm6]	C	T	1.994e^-4	0.597	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1638649	2L_1638649_SNP [dm3] 2L_1638649_SNP [dm6]	G	A	2.003e^-4	0.599	INTERGENIC
2L	8989154	2L_8989154_SNP [dm3] 2L_8989154_SNP [dm6]	T	C	2.004e^-4	0.599	UTR_5_PRIME rost
3L	11526566	3L_11526566_INS [dm3] 3L_11533466_INS [dm6]	C	TA	2.008e^-4	0.599	INTRON Mob2
2R	5608062	2R_5608062_SNP [dm3] 2R_9720557_SNP [dm6]	T	A	2.029e^-4	0.601	INTRON sqa
2L	8484557	2L_8484557_SNP [dm3] 2L_8484557_SNP [dm6]	C	T	2.030e^-4	0.601	INTRON d	TF binding site mE1_TFBS_chinmo
2L	8528529	2L_8528529_SNP [dm3] 2L_8528529_SNP [dm6]	G	T	2.031e^-4	0.601	UTR_5_PRIME lmgB & 1 other UPSTREAM lmgB & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	8528593	2L_8528593_SNP [dm3] 2L_8528593_SNP [dm6]	T	C	2.031e^-4	0.601	START_GAINED lmgB & 1 other UTR_5_PRIME lmgB & 1 other UPSTREAM lmgB & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	8528594	2L_8528594_SNP [dm3] 2L_8528594_SNP [dm6]	A	C	2.031e^-4	0.601	UTR_5_PRIME lmgB & 1 other UPSTREAM lmgB & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	17260765	X_17260765_SNP [dm3] X_17366732_SNP [dm6]	A	G	2.050e^-4	0.605	INTERGENIC
2R	10860455	2R_10860455_SNP [dm3] 2R_14972950_SNP [dm6]	G	A	2.059e^-4	0.607	INTRON ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18436126	3R_18436126_SNP [dm3] 3R_22610404_SNP [dm6]	G	A	2.068e^-4	0.609	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15252585	3R_15252585_DEL [dm3] 3R_19426863_DEL [dm6]	AT	A	2.075e^-4	0.609	INTRON CG31221
3L	17186703	3L_17186703_SNP [dm3] 3L_17193603_SNP [dm6]	C	A	2.078e^-4	0.609	INTRON Rbp6
2L	2589381	2L_2589381_SNP [dm3] 2L_2589381_SNP [dm6]	A	G	2.080e^-4	0.609	INTERGENIC
3R	5765089	3R_5765089_SNP [dm3] 3R_9939367_SNP [dm6]	C	T	2.085e^-4	0.609	INTRON Glut4EF
X	19435273	X_19435273_SNP [dm3] X_19541240_SNP [dm6]	A	T	2.085e^-4	0.609	INTRON CG32532
3L	3384873	3L_3384873_SNP [dm3] 3L_3384873_SNP [dm6]	A	G	2.096e^-4	0.612	INTERGENIC
3L	8435978	3L_8435978_SNP [dm3] 3L_8442878_SNP [dm6]	G	A	2.111e^-4	0.615	UPSTREAM Unr DOWNSTREAM CG6983 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15126732	X_15126732_SNP [dm3] X_15232699_SNP [dm6]	T	G	2.117e^-4	0.615	INTERGENIC
2L	8004202	2L_8004202_SNP [dm3] 2L_8004202_SNP [dm6]	A	C	2.118e^-4	0.615	START_GAINED Wwox UTR_5_PRIME Wwox DOWNSTREAM Spn28Dc
2L	4375474	2L_4375474_SNP [dm3] 2L_4375474_SNP [dm6]	T	C	2.125e^-4	0.615	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3384039	3L_3384039_SNP [dm3] 3L_3384039_SNP [dm6]	G	A	2.127e^-4	0.615	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8350528	2L_8350528_SNP [dm3] 2L_8350528_SNP [dm6]	G	A	2.133e^-4	0.615	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
3R	9565878	3R_9565878_SNP [dm3] 3R_13740156_SNP [dm6]	A	C	2.140e^-4	0.615	INTRON CG34383
3R	12194819	3R_12194819_SNP [dm3] 3R_16369097_SNP [dm6]	A	G	2.140e^-4	0.615	UTR_3_PRIME CG10317 UPSTREAM CG14880 DOWNSTREAM CG10317	regulatory region REDfly_CRMs
X	18547405	X_18547405_SNP [dm3] X_18653372_SNP [dm6]	A	G	2.142e^-4	0.615	UPSTREAM Ing3 DOWNSTREAM CG6659 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8583848	3L_8583848_SNP [dm3] 3L_8590748_SNP [dm6]	G	T	2.142e^-4	0.615	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo
X	18541368	X_18541368_SNP [dm3] X_18647335_SNP [dm6]	A	T	2.151e^-4	0.615	UTR_5_PRIME Rip11 UPSTREAM CG6540	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	9087359	3L_9087359_SNP [dm3] 3L_9094259_SNP [dm6]	G	A	2.158e^-4	0.615	INTRON CG32032
2L	6711231	2L_6711231_INS [dm3] 2L_6711231_INS [dm6]	A	AAAGTTAACAA...	2.163e^-4	0.615	DOWNSTREAM AkhR INTERGENIC
3L	8251361	3L_8251361_SNP [dm3] 3L_8258261_SNP [dm6]	G	T	2.164e^-4	0.615	INTRON Dscam4
3R	20568859	3R_20568859_SNP [dm3] 3R_24743137_SNP [dm6]	T	G	2.167e^-4	0.615	INTRON tok
3L	1167954	3L_1167954_SNP [dm3] 3L_1167954_SNP [dm6]	G	A	2.169e^-4	0.615	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17879223	3L_17879223_SNP [dm3] 3L_17886123_SNP [dm6]	G	T	2.170e^-4	0.615	SYNONYMOUS_CODING CG16775 UPSTREAM CR42548	TF binding site mE1_TFBS_cad
X	8208652	X_8208652_SNP [dm3] X_8314619_SNP [dm6]	G	C	2.173e^-4	0.615	INTRON nAChRalpha3
3L	3384870	3L_3384870_SNP [dm3] 3L_3384870_SNP [dm6]	G	A	2.175e^-4	0.615	INTERGENIC
3R	14281464	3R_14281464_SNP [dm3] 3R_18455742_SNP [dm6]	A	T	2.175e^-4	0.615	INTRON fru
2R	11171317	2R_11171317_SNP [dm3] 2R_15283812_SNP [dm6]	T	C	2.185e^-4	0.617	INTRON Trpm
2L	10312423	2L_10312423_SNP [dm3] 2L_10312423_SNP [dm6]	A	G	2.193e^-4	0.619	SYNONYMOUS_CODING CG5384 UPSTREAM CG5385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8507814	2L_8507814_SNP [dm3] 2L_8507814_SNP [dm6]	G	A	2.202e^-4	0.619	UPSTREAM Dh31 INTERGENIC
3L	12479614	3L_12479614_DEL [dm3] 3L_12486514_DEL [dm6]	AA	A	2.205e^-4	0.619	DOWNSTREAM CG10660 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12822166	2L_12822166_SNP [dm3] 2L_12822166_SNP [dm6]	C	G	2.209e^-4	0.619	UTR_5_PRIME kek1	TF binding site BDTNP1_TFBS_dl
2L	13414010	2L_13414010_SNP [dm3] 2L_13414010_SNP [dm6]	A	C	2.211e^-4	0.619	NON_SYNONYMOUS_CODING CG16956 DOWNSTREAM CG16848
2L	7215199	2L_7215199_SNP [dm3] 2L_7215199_SNP [dm6]	T	G	2.213e^-4	0.619	INTRON CG13784
3R	1565934	3R_1565934_SNP [dm3] 3R_5740212_SNP [dm6]	G	A	2.217e^-4	0.619	SYNONYMOUS_CODING Sym
3L	16666037	3L_16666037_SNP [dm3] 3L_16672937_SNP [dm6]	T	C	2.224e^-4	0.619	INTRON zetaCOP
2L	8736186	2L_8736186_SNP [dm3] 2L_8736186_SNP [dm6]	A	C	2.224e^-4	0.619	UPSTREAM raw INTRON raw	TF binding site mE1_TFBS_HSA
X	18541370	X_18541370_SNP [dm3] X_18647337_SNP [dm6]	A	T	2.227e^-4	0.619	UTR_5_PRIME Rip11 UPSTREAM CG6540	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	1175591	3L_1175591_SNP [dm3] 3L_1175591_SNP [dm6]	T	C	2.229e^-4	0.619	INTRON bab2	TF binding site BDTNP1_TFBS_dl
3L	1240112	3L_1240112_INS [dm3] 3L_1240112_INS [dm6]	A	AACA	2.251e^-4	0.623		TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	21327607	X_21327607_SNP [dm3] X_21456580_SNP [dm6]	C	A	2.251e^-4	0.623	INTRON CG42343
X	19140262	X_19140262_SNP [dm3] X_19246229_SNP [dm6]	G	A	2.255e^-4	0.623	SYNONYMOUS_CODING CG7992	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	23673631	3R_23673631_SNP [dm3] 3R_27847909_SNP [dm6]	A	T	2.257e^-4	0.623	DOWNSTREAM Or98a INTRON CG34353
2L	3989056	2L_3989056_DEL [dm3] 2L_3989056_DEL [dm6]	AAGCAAGTAG	T	2.259e^-4	0.623	INTRON fred	TF binding site mE1_TFBS_bab1
X	16164620	X_16164620_SNP [dm3] X_16270587_SNP [dm6]	T	A	2.266e^-4	0.624	SPLICE_SITE_REGION kat80 UPSTREAM Mfe2 INTRON kat80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11766557	2R_11766557_SNP [dm3] 2R_15879052_SNP [dm6]	G	A	2.272e^-4	0.625	INTRON sli
3L	5143347	3L_5143347_SNP [dm3] 3L_5150247_SNP [dm6]	A	G	2.284e^-4	0.627	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16165972	X_16165972_SNP [dm3] X_16271939_SNP [dm6]	C	T	2.289e^-4	0.628	SYNONYMOUS_CODING Mfe2 INTRON kat80	TF binding site mE1_TFBS_sens
2L	4292838	2L_4292838_SNP [dm3] 2L_4292838_SNP [dm6]	G	T	2.297e^-4	0.629	INTRON tutl
2L	4304951	2L_4304951_SNP [dm3] 2L_4304951_SNP [dm6]	T	A	2.304e^-4	0.63	INTRON tutl
X	3798116	X_3798116_SNP [dm3] X_3904083_SNP [dm6]	C	A	2.308e^-4	0.63	SYNONYMOUS_CODING CG42541
X	18544155	X_18544155_SNP [dm3] X_18650122_SNP [dm6]	C	G	2.311e^-4	0.63	DOWNSTREAM CG6540 & 1 other INTRON CG6617	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7179728	2R_7179728_SNP [dm3] 2R_11292223_SNP [dm6]	C	T	2.322e^-4	0.632	SYNONYMOUS_CODING dare UPSTREAM CG30033	TF binding site mE1_TFBS_sens
3L	2141972	3L_2141972_SNP [dm3] 3L_2141972_SNP [dm6]	C	T	2.327e^-4	0.633	INTRON zormin	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3258877	X_3258877_SNP [dm3] X_3364844_SNP [dm6]	G	A	2.332e^-4	0.633	INTERGENIC
2L	3378521	2L_3378521_SNP [dm3] 2L_3378521_SNP [dm6]	G	A	2.356e^-4	0.637	UTR_3_PRIME Ptpa
X	9568710	X_9568710_SNP [dm3] X_9674677_SNP [dm6]	C	T	2.365e^-4	0.637	INTRON nej	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	14053747	3R_14053747_SNP [dm3] 3R_18228025_SNP [dm6]	C	T	2.367e^-4	0.637	SYNONYMOUS_CODING Mdh2	TF binding site mE1_TFBS_HSA
3L	1104240	3L_1104240_SNP [dm3] 3L_1104240_SNP [dm6]	A	G	2.369e^-4	0.637	INTERGENIC	TF binding site mE1_TFBS_cad
X	18567307	X_18567307_SNP [dm3] X_18673274_SNP [dm6]	G	T	2.370e^-4	0.637	INTERGENIC
X	8747455	X_8747455_SNP [dm3] X_8853422_SNP [dm6]	G	A	2.378e^-4	0.637	UPSTREAM CG12075 INTRON CG12075
2R	11716706	2R_11716706_SNP [dm3] 2R_15829201_SNP [dm6]	A	C	2.379e^-4	0.637	INTRON tun & 1 other
3R	15252486	3R_15252486_INS [dm3] 3R_19426764_INS [dm6]	C	CTTG	2.379e^-4	0.637	INTRON CG31221
2L	7975282	2L_7975282_SNP [dm3] 2L_7975282_SNP [dm6]	C	G	2.389e^-4	0.637	SYNONYMOUS_CODING Snoo
2L	1255681	2L_1255681_SNP [dm3] 2L_1255681_SNP [dm6]	G	C	2.389e^-4	0.637	UPSTREAM robo3 INTERGENIC
X	17230193	X_17230193_SNP [dm3] X_17336160_SNP [dm6]	A	G	2.390e^-4	0.637	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2260325	3L_2260325_SNP [dm3] 3L_2260325_SNP [dm6]	G	A	2.390e^-4	0.637	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8410549	2R_8410549_SNP [dm3] 2R_12523044_SNP [dm6]	T	C	2.392e^-4	0.637	DOWNSTREAM CG33632 INTERGENIC	transposable element FlyBase
2L	8541841	2L_8541841_SNP [dm3] 2L_8541841_SNP [dm6]	A	G	2.394e^-4	0.637	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25200887	3R_25200887_SNP [dm3] 3R_29375165_SNP [dm6]	G	A	2.396e^-4	0.637	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	14978689	3R_14978689_SNP [dm3] 3R_19152967_SNP [dm6]	G	T	2.415e^-4	0.641	INTRON CG5835
2L	5770593	2L_5770593_SNP [dm3] 2L_5770593_SNP [dm6]	T	A	2.418e^-4	0.641	NON_SYNONYMOUS_CODING CG9171 EXON CR31912	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3421115	X_3421115_SNP [dm3] X_3527082_SNP [dm6]	C	T	2.448e^-4	0.648	INTRON CG32791
3R	15319377	3R_15319377_SNP [dm3] 3R_19493655_SNP [dm6]	C	A	2.453e^-4	0.648	INTRON Dys
2R	10860511	2R_10860511_SNP [dm3] 2R_14973006_SNP [dm6]	T	A	2.459e^-4	0.649	INTRON ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2502424	3R_2502424_SNP [dm3] 3R_6676702_SNP [dm6]	G	C	2.475e^-4	0.652	INTRON lab	TF binding site mE1_TFBS_kn
2R	10953578	2R_10953578_SNP [dm3] 2R_15066073_SNP [dm6]	A	T	2.484e^-4	0.652	INTERGENIC
3L	1262361	3L_1262361_DEL [dm3] 3L_1262361_DEL [dm6]	GTG	G	2.491e^-4	0.652	INTRON CG9134
3L	3384878	3L_3384878_DEL [dm3] 3L_3384878_DEL [dm6]	GATGGTACCCCTTA...	G	2.492e^-4	0.652	INTERGENIC
2R	11763250	2R_11763250_SNP [dm3] 2R_15875745_SNP [dm6]	G	C	2.501e^-4	0.652	SYNONYMOUS_CODING sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6253304	3R_6253304_SNP [dm3] 3R_10427582_SNP [dm6]	C	A	2.506e^-4	0.652	INTERGENIC
2L	8002942	2L_8002942_SNP [dm3] 2L_8002942_SNP [dm6]	G	A	2.517e^-4	0.652	INTRON Wwox
X	16164691	X_16164691_SNP [dm3] X_16270658_SNP [dm6]	A	T	2.519e^-4	0.652	UPSTREAM Mfe2 INTRON kat80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11617082	2R_11617082_SNP [dm3] 2R_15729577_SNP [dm6]	G	A	2.522e^-4	0.652	INTRON CG30089
2L	6976998	2L_6976998_SNP [dm3] 2L_6976998_SNP [dm6]	C	T	2.524e^-4	0.652	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	16928611	3R_16928611_SNP [dm3] 3R_21102889_SNP [dm6]	T	C	2.527e^-4	0.652	SYNONYMOUS_CODING CG5745
3R	921016	3R_921016_SNP [dm3] 3R_5095294_SNP [dm6]	A	G	2.533e^-4	0.652	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	22898062	3R_22898062_SNP [dm3] 3R_27072340_SNP [dm6]	T	C	2.538e^-4	0.652	INTERGENIC
3L	3384895	3L_3384895_SNP [dm3] 3L_3384895_SNP [dm6]	C	A	2.541e^-4	0.652	INTERGENIC
2R	10466241	2R_10466241_SNP [dm3] 2R_14578736_SNP [dm6]	C	T	2.542e^-4	0.652	INTRON ttv
3L	1165967	3L_1165967_SNP [dm3] 3L_1165967_SNP [dm6]	A	G	2.542e^-4	0.652	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe
3L	3788958	3L_3788958_SNP [dm3] 3L_3788958_SNP [dm6]	A	G	2.543e^-4	0.652	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	4669274	3L_4669274_SNP [dm3] 3L_4669274_SNP [dm6]	G	A	2.545e^-4	0.652	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6425865	X_6425865_SNP [dm3] X_6531832_SNP [dm6]	A	C	2.554e^-4	0.652	SPLICE_SITE_REGION RpL7A UPSTREAM snoRNA:Or-CD10 INTRON RpL7A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
2R	7787575	2R_7787575_SNP [dm3] 2R_11900070_SNP [dm6]	C	A	2.559e^-4	0.652	SYNONYMOUS_CODING Zip48C INTRON MCPH1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17334865	3R_17334865_SNP [dm3] 3R_21509143_SNP [dm6]	G	T	2.564e^-4	0.652	INTRON C15	TF binding site BDTNP1_TFBS_dl
3R	16929101	3R_16929101_SNP [dm3] 3R_21103379_SNP [dm6]	T	C	2.571e^-4	0.652	INTRON CG5745	TF binding site mE1_TFBS_HSA
2L	7215285	2L_7215285_SNP [dm3] 2L_7215285_SNP [dm6]	T	G	2.581e^-4	0.652	INTRON CG13784
2R	5608053	2R_5608053_SNP [dm3] 2R_9720548_SNP [dm6]	A	G	2.581e^-4	0.652	INTRON sqa
3R	6265535	3R_6265535_SNP [dm3] 3R_10439813_SNP [dm6]	C	T	2.581e^-4	0.652	INTERGENIC
3R	6265568	3R_6265568_SNP [dm3] 3R_10439846_SNP [dm6]	T	A	2.581e^-4	0.652	INTERGENIC
2L	3499353	2L_3499353_SNP [dm3] 2L_3499353_SNP [dm6]	A	G	2.584e^-4	0.652	SYNONYMOUS_CODING tim UTR_3_PRIME tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2142829	3L_2142829_SNP [dm3] 3L_2142829_SNP [dm6]	A	T	2.585e^-4	0.652	INTRON zormin
3L	7027701	3L_7027701_SNP [dm3] 3L_7034601_SNP [dm6]	T	C	2.586e^-4	0.652	INTRON Mp
2R	16949448	2R_16949448_SNP [dm3] 2R_21061943_SNP [dm6]	C	T	2.588e^-4	0.652	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54	TF binding site mE1_TFBS_HSA
X	13198859	X_13198859_SNP [dm3] X_13304826_SNP [dm6]	T	A	2.594e^-4	0.652	UPSTREAM CR45018 & 1 other INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_HSA
3L	12351032	3L_12351032_SNP [dm3] 3L_12357932_SNP [dm6]	G	A	2.598e^-4	0.652	INTERGENIC
2R	20021173	2R_20021173_SNP [dm3] 2R_24133650_SNP [dm6]	C	G	2.601e^-4	0.652	UPSTREAM Zfrp8 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	18545025	X_18545025_SNP [dm3] X_18650992_SNP [dm6]	G	A	2.604e^-4	0.652	SYNONYMOUS_CODING Ing3 UPSTREAM CG6617	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo
2R	19838319	2R_19838319_SNP [dm3] 2R_23950796_SNP [dm6]	G	T	2.606e^-4	0.652	SYNONYMOUS_CODING fzr2 INTRON CG2970	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3384861	3L_3384861_DEL [dm3] 3L_3384861_DEL [dm6]	ATTTTTG	A	2.608e^-4	0.652	INTERGENIC
3R	6930406	3R_6930406_SNP [dm3] 3R_11104684_SNP [dm6]	T	A	2.614e^-4	0.652	INTERGENIC
X	4234893	X_4234893_SNP [dm3] X_4340860_SNP [dm6]	G	T	2.616e^-4	0.652	INTRON norpA
2R	7778892	2R_7778892_SNP [dm3] 2R_11891387_SNP [dm6]	G	A	2.617e^-4	0.652	UPSTREAM Ef1alpha48D & 1 other INTRON Ef1alpha48D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	5608057	2R_5608057_SNP [dm3] 2R_9720552_SNP [dm6]	A	C	2.617e^-4	0.652	INTRON sqa
2L	5099337	2L_5099337_SNP [dm3] 2L_5099337_SNP [dm6]	T	A	2.621e^-4	0.652	UTR_3_PRIME CG8680 DOWNSTREAM CG8680 & 1 other	TF binding site mE1_TFBS_HSA
2L	7002480	2L_7002480_SNP [dm3] 2L_7002480_SNP [dm6]	G	A	2.623e^-4	0.652	INTRON uif
3L	8112862	3L_8112862_SNP [dm3] 3L_8119762_SNP [dm6]	G	A	2.633e^-4	0.652	SYNONYMOUS_CODING msk
3R	6227348	3R_6227348_SNP [dm3] 3R_10401626_SNP [dm6]	T	A	2.635e^-4	0.652	NON_SYNONYMOUS_CODING mthl11 DOWNSTREAM cwo
2L	12807890	2L_12807890_SNP [dm3] 2L_12807890_SNP [dm6]	T	A	2.638e^-4	0.652	EXON CR43818
X	2479474	X_2479474_SNP [dm3] X_2585441_SNP [dm6]	G	A	2.638e^-4	0.652	UPSTREAM wds & 1 other INTRON CG13760	TF binding site BDTNP1_TFBS_dl
3L	12251247	3L_12251247_SNP [dm3] 3L_12258147_SNP [dm6]	G	C	2.639e^-4	0.652	INTRON app
3R	20014851	3R_20014851_SNP [dm3] 3R_24189129_SNP [dm6]	A	T	2.640e^-4	0.652	UTR_3_PRIME jnj UPSTREAM CG5515	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18923379	X_18923379_SNP [dm3] X_19029346_SNP [dm6]	A	G	2.643e^-4	0.652	DOWNSTREAM CG43759 INTERGENIC
2R	10466176	2R_10466176_SNP [dm3] 2R_14578671_SNP [dm6]	T	C	2.644e^-4	0.652	INTRON ttv
3R	22820456	3R_22820456_SNP [dm3] 3R_26994734_SNP [dm6]	C	A	2.659e^-4	0.654	UPSTREAM TwdlC INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12837654	2L_12837654_SNP [dm3] 2L_12837654_SNP [dm6]	A	G	2.664e^-4	0.655	INTERGENIC
X	20455657	X_20455657_SNP [dm3] X_20584630_SNP [dm6]	G	A	2.672e^-4	0.656	INTERGENIC
3L	15368076	3L_15368076_SNP [dm3] 3L_15374976_SNP [dm6]	T	G	2.676e^-4	0.656	INTERGENIC
3R	15973697	3R_15973697_SNP [dm3] 3R_20147975_SNP [dm6]	C	T	2.683e^-4	0.656	INTERGENIC
3R	22890197	3R_22890197_SNP [dm3] 3R_27064475_SNP [dm6]	G	A	2.688e^-4	0.656	UPSTREAM Nep5 & 1 other DOWNSTREAM spz INTERGENIC
3R	15252488	3R_15252488_DEL [dm3] 3R_19426766_DEL [dm6]	ATTTTAAAAGTAATAA...	A	2.690e^-4	0.656	INTRON CG31221
3R	16929061	3R_16929061_SNP [dm3] 3R_21103339_SNP [dm6]	C	A	2.693e^-4	0.656	INTRON CG5745	TF binding site mE1_TFBS_HSA
X	4748741	X_4748741_SNP [dm3] X_4854708_SNP [dm6]	G	T	2.695e^-4	0.656	INTRON CG42594
3L	10071262	3L_10071262_SNP [dm3] 3L_10078162_SNP [dm6]	A	C	2.695e^-4	0.656	INTRON dpr6	TF binding site mE1_TFBS_cad
2R	18260132	2R_18260132_SNP [dm3] 2R_22372627_SNP [dm6]	A	C	2.700e^-4	0.656	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
3R	18140534	3R_18140534_DEL [dm3] 3R_22314812_DEL [dm6]	GG	G	2.710e^-4	0.656	INTRON CG34377
3R	19948418	3R_19948418_SNP [dm3] 3R_24122696_SNP [dm6]	G	C	2.713e^-4	0.656	INTRON Rootletin
3R	18464136	3R_18464136_SNP [dm3] 3R_22638414_SNP [dm6]	T	G	2.716e^-4	0.656	SYNONYMOUS_CODING loco	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	3954912	3L_3954912_SNP [dm3] 3L_3954912_SNP [dm6]	T	C	2.718e^-4	0.656	UTR_3_PRIME CG12605
3R	13840656	3R_13840656_SNP [dm3] 3R_18014934_SNP [dm6]	T	C	2.719e^-4	0.656	UTR_3_PRIME cpo DOWNSTREAM cpo
3L	1620372	3L_1620372_SNP [dm3] 3L_1620372_SNP [dm6]	T	A	2.745e^-4	0.662	UTR_3_PRIME CG33230 INTRON ABCB7
3L	15367627	3L_15367627_SNP [dm3] 3L_15374527_SNP [dm6]	G	T	2.759e^-4	0.664	INTERGENIC
3L	8522146	3L_8522146_SNP [dm3] 3L_8529046_SNP [dm6]	T	A	2.766e^-4	0.664	INTRON foi
3L	16213523	3L_16213523_SNP [dm3] 3L_16220423_SNP [dm6]	C	T	2.767e^-4	0.664	INTERGENIC
3R	2260890	3R_2260890_SNP [dm3] 3R_6435168_SNP [dm6]	T	C	2.768e^-4	0.664	INTRON gpp
2L	4931812	2L_4931812_SNP [dm3] 2L_4931812_SNP [dm6]	T	C	2.777e^-4	0.665	INTRON hoe1
2R	10436234	2R_10436234_SNP [dm3] 2R_14548729_SNP [dm6]	G	A	2.778e^-4	0.665	INTRON ttv
2L	13225768	2L_13225768_SNP [dm3] 2L_13225768_SNP [dm6]	C	T	2.786e^-4	0.666	UPSTREAM CG15480 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
2R	4081095	2R_4081095_SNP [dm3] 2R_8193590_SNP [dm6]	T	C	2.790e^-4	0.666	INTRON LRP1
3L	1239891	3L_1239891_SNP [dm3] 3L_1239891_SNP [dm6]	G	A	2.795e^-4	0.666	SYNONYMOUS_CODING CG9194	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	819283	2R_819283_SNP [dm3] 2R_4931778_SNP [dm6]	T	A	2.796e^-4	0.666	INTRON Ir41a	transposable element FlyBase
X	4380125	X_4380125_SNP [dm3] X_4486092_SNP [dm6]	G	T	2.802e^-4	0.666	DOWNSTREAM bi INTRON CR32773
3L	15368009	3L_15368009_SNP [dm3] 3L_15374909_SNP [dm6]	A	G	2.803e^-4	0.666	INTERGENIC
3R	14076344	3R_14076344_SNP [dm3] 3R_18250622_SNP [dm6]	A	C	2.811e^-4	0.667	UPSTREAM CG18598 DOWNSTREAM 14-3-3epsilon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12837644	2L_12837644_SNP [dm3] 2L_12837644_SNP [dm6]	A	G	2.815e^-4	0.667	INTERGENIC
3R	19171000	3R_19171000_SNP [dm3] 3R_23345278_SNP [dm6]	T	C	2.827e^-4	0.668	INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	9850545	3L_9850545_SNP [dm3] 3L_9857445_SNP [dm6]	A	T	2.828e^-4	0.668	UTR_3_PRIME CG10809 DOWNSTREAM CG10809	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	9570320	X_9570320_SNP [dm3] X_9676287_SNP [dm6]	T	C	2.836e^-4	0.669	INTRON nej
3L	9086865	3L_9086865_SNP [dm3] 3L_9093765_SNP [dm6]	C	G	2.839e^-4	0.669	INTRON CG32032
3L	2388378	3L_2388378_SNP [dm3] 3L_2388378_SNP [dm6]	T	A	2.842e^-4	0.669	UTR_5_PRIME CG45186 UPSTREAM CG42787 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8461118	2R_8461118_SNP [dm3] 2R_12573613_SNP [dm6]	A	G	2.853e^-4	0.671	SYNONYMOUS_CODING ClC-b	TF binding site mE1_TFBS_sens
X	5425888	X_5425888_DEL [dm3] X_5531855_DEL [dm6]	ATTTCTTACAAACA...	A	2.863e^-4	0.671	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13211886	X_13211886_SNP [dm3] X_13317853_SNP [dm6]	G	C	2.867e^-4	0.671	INTRON IP3K2
3L	14423020	3L_14423020_DEL [dm3] 3L_14429920_DEL [dm6]	AA	A	2.869e^-4	0.671	INTRON bbg
2R	14507964	2R_14507964_SNP [dm3] 2R_18620459_SNP [dm6]	T	A	2.873e^-4	0.671	DOWNSTREAM Atg7 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	4718274	2R_4718274_SNP [dm3] 2R_8830769_SNP [dm6]	A	C	2.875e^-4	0.671	INTRON sns	TF binding site mE1_TFBS_chinmo
2L	1819951	2L_1819951_SNP [dm3] 2L_1819951_SNP [dm6]	A	T	2.876e^-4	0.671	INTERGENIC
X	2953851	X_2953851_SNP [dm3] X_3059818_SNP [dm6]	C	G	2.882e^-4	0.672	INTRON kirre
3L	1173470	3L_1173470_SNP [dm3] 3L_1173470_SNP [dm6]	T	C	2.908e^-4	0.677	NON_SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18566257	X_18566257_INS [dm3] X_18672224_INS [dm6]	T	TAAAAAACGTAT...	2.924e^-4	0.678	INTERGENIC
2R	5413096	2R_5413096_SNP [dm3] 2R_9525591_SNP [dm6]	T	G	2.924e^-4	0.678	INTRON brp
3L	4579330	3L_4579330_SNP [dm3] 3L_4579330_SNP [dm6]	A	T	2.931e^-4	0.678	INTRON CG42540
3R	9263557	3R_9263557_INS [dm3] 3R_13437835_INS [dm6]	C	CCTGCTGCTCCTC...	2.933e^-4	0.678	DOWNSTREAM CR42756 INTERGENIC
2L	5630076	2L_5630076_SNP [dm3] 2L_5630076_SNP [dm6]	G	A	2.935e^-4	0.678	INTRON CG31646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	3384965	3L_3384965_SNP [dm3] 3L_3384965_SNP [dm6]	G	A	2.938e^-4	0.678	INTERGENIC
2L	9605311	2L_9605311_SNP [dm3] 2L_9605311_SNP [dm6]	T	C	2.940e^-4	0.678	INTERGENIC	regulatory region REDfly_CRMs
3L	14356716	3L_14356716_SNP [dm3] 3L_14363616_SNP [dm6]	G	A	2.947e^-4	0.679	INTRON fz
3R	20910251	3R_20910251_SNP [dm3] 3R_25084529_SNP [dm6]	G	C	2.954e^-4	0.679	SYNONYMOUS_CODING fd96Ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14116624	3R_14116624_SNP [dm3] 3R_18290902_SNP [dm6]	A	G	2.957e^-4	0.679	SYNONYMOUS_CODING l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6575938	3R_6575938_SNP [dm3] 3R_10750216_SNP [dm6]	C	T	2.962e^-4	0.679	NON_SYNONYMOUS_CODING TkR86C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3272852	3L_3272852_SNP [dm3] 3L_3272852_SNP [dm6]	C	G	2.963e^-4	0.679	INTRON CG14960
2L	8509176	2L_8509176_SNP [dm3] 2L_8509176_SNP [dm6]	C	T	2.964e^-4	0.679	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
3R	13456188	3R_13456188_SNP [dm3] 3R_17630466_SNP [dm6]	A	G	2.974e^-4	0.679	UPSTREAM CG43175 DOWNSTREAM tRNA:CR31569 INTERGENIC
3L	14141597	3L_14141597_DEL [dm3] 3L_14148497_DEL [dm6]	TT	T	2.980e^-4	0.679	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	10819429	2L_10819429_SNP [dm3] 2L_10819429_SNP [dm6]	G	A	2.980e^-4	0.679	NON_SYNONYMOUS_CODING CG6508 INTRON Nos	TF binding site mE1_TFBS_cad
2R	17877337	2R_17877337_SNP [dm3] 2R_21989832_SNP [dm6]	T	G	2.981e^-4	0.679	INTRON CG34370	TF binding site mE1_TFBS_cad
3R	2642205	3R_2642205_SNP [dm3] 3R_6816483_SNP [dm6]	C	T	3.007e^-4	0.685	UPSTREAM CR42651 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9360306	3R_9360306_SNP [dm3] 3R_13534584_SNP [dm6]	G	A	3.011e^-4	0.685	INTERGENIC
3R	21422806	3R_21422806_SNP [dm3] 3R_25597084_SNP [dm6]	T	A	3.015e^-4	0.685	INTRON ymp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	2260686	3L_2260686_SNP [dm3] 3L_2260686_SNP [dm6]	C	G	3.022e^-4	0.685	NON_SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20878348	X_20878348_SNP [dm3] X_21007321_SNP [dm6]	G	C	3.029e^-4	0.686	INTERGENIC
2R	7803043	2R_7803043_SNP [dm3] 2R_11915538_SNP [dm6]	C	T	3.044e^-4	0.689	INTERGENIC	TF binding site mE1_TFBS_cad
3R	2663254	3R_2663254_SNP [dm3] 3R_6837532_SNP [dm6]	C	T	3.053e^-4	0.689	INTRON Scr	regulatory region REDfly_CRMs
3L	975693	3L_975693_SNP [dm3] 3L_975693_SNP [dm6]	T	C	3.055e^-4	0.689	INTRON Glut1
2L	6944214	2L_6944214_SNP [dm3] 2L_6944214_SNP [dm6]	T	C	3.056e^-4	0.689	SYNONYMOUS_CODING CG10158	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9555359	3R_9555359_SNP [dm3] 3R_13729637_SNP [dm6]	C	G	3.066e^-4	0.69	INTRON CG34383	TF binding site mE1_TFBS_inv
2L	12816357	2L_12816357_SNP [dm3] 2L_12816357_SNP [dm6]	C	G	3.072e^-4	0.691	DOWNSTREAM kek1 INTERGENIC
3L	10743253	3L_10743253_DEL [dm3] 3L_10750153_DEL [dm6]	CCATAGGGC	C	3.079e^-4	0.692	INTERGENIC
3R	5765061	3R_5765061_SNP [dm3] 3R_9939339_SNP [dm6]	A	G	3.093e^-4	0.693	INTRON Glut4EF
2R	10860533	2R_10860533_DEL [dm3] 2R_14973028_DEL [dm6]	AAAAA	A	3.097e^-4	0.693	INTRON ckn	TF binding site BDTNP1_TFBS_twi
3R	11507092	3R_11507092_SNP [dm3] 3R_15681370_SNP [dm6]	A	G	3.099e^-4	0.693	INTRON pxb
3R	9741652	3R_9741652_SNP [dm3] 3R_13915930_SNP [dm6]	G	A	3.105e^-4	0.693	INTERGENIC
2R	9605645	2R_9605645_SNP [dm3] 2R_13718140_SNP [dm6]	A	G	3.105e^-4	0.693	INTRON fas
3L	2541586	3L_2541586_SNP [dm3] 3L_2541586_SNP [dm6]	T	C	3.114e^-4	0.694	INTRON Spn
3L	1387484	3L_1387484_SNP [dm3] 3L_1387484_SNP [dm6]	T	C	3.119e^-4	0.694	DOWNSTREAM ru INTRON Ptp61F
2L	15897256	2L_15897256_SNP [dm3] 2L_15897256_SNP [dm6]	C	A	3.120e^-4	0.694	DOWNSTREAM CG31735 INTERGENIC
2L	3985286	2L_3985286_SNP [dm3] 2L_3985286_SNP [dm6]	A	T	3.123e^-4	0.694	INTRON fred
2L	3244760	2L_3244760_SNP [dm3] 2L_3244760_SNP [dm6]	T	C	3.128e^-4	0.694	INTERGENIC
2L	19676166	2L_19676166_SNP [dm3] 2L_19676166_SNP [dm6]	A	G	3.130e^-4	0.694	INTRON Lar
2L	8530374	2L_8530374_SNP [dm3] 2L_8530374_SNP [dm6]	T	C	3.136e^-4	0.694	INTRON CG17834	TF binding site mE1_TFBS_HSA
3L	16336043	3L_16336043_SNP [dm3] 3L_16342943_SNP [dm6]	A	T	3.149e^-4	0.696	SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad
2R	19097316	2R_19097316_SNP [dm3] 2R_23209793_SNP [dm6]	A	G	3.162e^-4	0.699	DOWNSTREAM LS2 INTERGENIC
3R	16472229	3R_16472229_SNP [dm3] 3R_20646507_SNP [dm6]	A	C	3.169e^-4	0.699	SYNONYMOUS_CODING GluRIIE
2L	9102392	2L_9102392_SNP [dm3] 2L_9102392_SNP [dm6]	A	T	3.171e^-4	0.699	INTERGENIC
X	16164974	X_16164974_SNP [dm3] X_16270941_SNP [dm6]	G	A	3.174e^-4	0.699	UPSTREAM Mfe2 INTRON kat80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
2L	1933320	2L_1933320_SNP [dm3] 2L_1933320_SNP [dm6]	T	G	3.180e^-4	0.699	INTRON CG7337
3R	14075844	3R_14075844_SNP [dm3] 3R_18250122_SNP [dm6]	T	C	3.189e^-4	0.699	UTR_3_PRIME 14-3-3epsilon UPSTREAM CG18598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16319641	3L_16319641_SNP [dm3] 3L_16326541_SNP [dm6]	A	G	3.191e^-4	0.699	SYNONYMOUS_CODING CG13039 UTR_5_PRIME CG13040 UPSTREAM CG13040 DOWNSTREAM CG13038
2L	15784347	2L_15784347_SNP [dm3] 2L_15784347_SNP [dm6]	T	C	3.192e^-4	0.699	SYNONYMOUS_CODING CG18109
X	9570361	X_9570361_SNP [dm3] X_9676328_SNP [dm6]	G	A	3.196e^-4	0.699	INTRON nej
3L	17906865	3L_17906865_SNP [dm3] 3L_17913765_SNP [dm6]	A	T	3.202e^-4	0.7	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	11098508	X_11098508_SNP [dm3] X_11204475_SNP [dm6]	T	G	3.211e^-4	0.701	INTERGENIC
3R	15765042	3R_15765042_SNP [dm3] 3R_19939320_SNP [dm6]	A	T	3.217e^-4	0.702	INTRON Hs6st
3R	9665735	3R_9665735_SNP [dm3] 3R_13840013_SNP [dm6]	A	C	3.221e^-4	0.702	UPSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11421059	2R_11421059_SNP [dm3] 2R_15533554_SNP [dm6]	C	T	3.225e^-4	0.702	UTR_5_PRIME CG30471
3L	1167053	3L_1167053_SNP [dm3] 3L_1167053_SNP [dm6]	C	T	3.239e^-4	0.702	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	493550	2L_493550_SNP [dm3] 2L_493550_SNP [dm6]	G	A	3.241e^-4	0.702	INTRON ush
2R	5608042	2R_5608042_SNP [dm3] 2R_9720537_SNP [dm6]	C	T	3.244e^-4	0.702	INTRON sqa
3L	3783922	3L_3783922_SNP [dm3] 3L_3783922_SNP [dm6]	T	C	3.250e^-4	0.702	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	2937888	3R_2937888_SNP [dm3] 3R_7112166_SNP [dm6]	T	A	3.251e^-4	0.702	UPSTREAM Alh INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	524854	X_524854_SNP [dm3] X_630821_SNP [dm6]	T	A	3.253e^-4	0.702	NON_SYNONYMOUS_CODING l_1_1Bi	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	1932889	2L_1932889_SNP [dm3] 2L_1932889_SNP [dm6]	G	T	3.253e^-4	0.702	INTRON CG7337
3R	17829629	3R_17829629_SNP [dm3] 3R_22003907_SNP [dm6]	A	G	3.255e^-4	0.702	INTRON Eip93F	TF binding site mE1_TFBS_cad
3R	6653660	3R_6653660_SNP [dm3] 3R_10827938_SNP [dm6]	G	A	3.262e^-4	0.702	UTR_5_PRIME Cad86C INTRON Cad86C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10860547	2R_10860547_SNP [dm3] 2R_14973042_SNP [dm6]	G	A	3.269e^-4	0.703	INTRON ckn	TF binding site BDTNP1_TFBS_twi
2L	7283617	2L_7283617_SNP [dm3] 2L_7283617_SNP [dm6]	A	C	3.274e^-4	0.703	INTERGENIC
3L	13917002	3L_13917002_INS [dm3] 3L_13923902_INS [dm6]	C	CCCACAC	3.277e^-4	0.703	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	11506786	2R_11506786_SNP [dm3] 2R_15619281_SNP [dm6]	G	A	3.288e^-4	0.705	INTRON CG42524
3L	18028976	3L_18028976_SNP [dm3] 3L_18035876_SNP [dm6]	T	A	3.296e^-4	0.706	INTRON Eip75B
X	17678477	X_17678477_SNP [dm3] X_17784444_SNP [dm6]	A	G	3.311e^-4	0.708	INTERGENIC
2R	11911230	2R_11911230_SNP [dm3] 2R_16023725_SNP [dm6]	T	A	3.320e^-4	0.709	DOWNSTREAM casp INTRON CG8399
3R	19197573	3R_19197573_SNP [dm3] 3R_23371851_SNP [dm6]	C	T	3.334e^-4	0.711	DOWNSTREAM CR44322 INTERGENIC
3L	3113720	3L_3113720_SNP [dm3] 3L_3113720_SNP [dm6]	C	T	3.341e^-4	0.711	NON_SYNONYMOUS_CODING CG45067 DOWNSTREAM prominin-like	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8466384	2R_8466384_SNP [dm3] 2R_12578879_SNP [dm6]	A	G	3.346e^-4	0.711	INTRON Sin3A
2L	15760166	2L_15760166_SNP [dm3] 2L_15760166_SNP [dm6]	G	T	3.346e^-4	0.711	INTRON Gli	TF binding site mE1_TFBS_cad
X	20912200	X_20912200_SNP [dm3] X_21041173_SNP [dm6]	G	A	3.349e^-4	0.711	UTR_3_PRIME Ntf-2 UPSTREAM CG15449 & 1 other	TF binding site mE1_TFBS_cad
2L	8004135	2L_8004135_SNP [dm3] 2L_8004135_SNP [dm6]	C	T	3.358e^-4	0.711	SYNONYMOUS_CODING Wwox DOWNSTREAM Spn28Dc
2R	4718281	2R_4718281_SNP [dm3] 2R_8830776_SNP [dm6]	C	T	3.358e^-4	0.711	INTRON sns	TF binding site mE1_TFBS_chinmo
X	20878366	X_20878366_SNP [dm3] X_21007339_SNP [dm6]	T	A	3.361e^-4	0.711	INTERGENIC
3L	4669106	3L_4669106_SNP [dm3] 3L_4669106_SNP [dm6]	C	T	3.368e^-4	0.712	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19542653	2R_19542653_SNP [dm3] 2R_23655130_SNP [dm6]	G	T	3.374e^-4	0.713	DOWNSTREAM retn INTERGENIC
2L	7263278	2L_7263278_SNP [dm3] 2L_7263278_SNP [dm6]	A	T	3.384e^-4	0.714	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	796671	3L_796671_SNP [dm3] 3L_796671_SNP [dm6]	T	C	3.392e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16138055	3L_16138055_DEL [dm3] 3L_16144955_DEL [dm6]	TT	T	3.400e^-4	0.716	UPSTREAM CG32152 & 1 other INTRON CG5151
2R	807927	2R_807927_SNP [dm3] 2R_4920422_SNP [dm6]	C	G	3.408e^-4	0.717	INTRON Ir41a	transposable element FlyBase
3L	12050076	3L_12050076_SNP [dm3] 3L_12056976_SNP [dm6]	G	A	3.418e^-4	0.718	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2630631	2L_2630631_SNP [dm3] 2L_2630631_SNP [dm6]	C	G	3.431e^-4	0.718	INTERGENIC
2R	7787739	2R_7787739_SNP [dm3] 2R_11900234_SNP [dm6]	C	T	3.433e^-4	0.718	SYNONYMOUS_CODING Zip48C INTRON MCPH1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18912286	2L_18912286_SNP [dm3] 2L_18912286_SNP [dm6]	A	G	3.436e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9362546	2R_9362546_SNP [dm3] 2R_13475041_SNP [dm6]	T	C	3.439e^-4	0.718	INTRON arr
X	18565378	X_18565378_SNP [dm3] X_18671345_SNP [dm6]	C	G	3.442e^-4	0.718	INTERGENIC
2R	825633	2R_825633_SNP [dm3] 2R_4938128_SNP [dm6]	G	T	3.443e^-4	0.718	INTRON Ir41a
2L	8525759	2L_8525759_SNP [dm3] 2L_8525759_SNP [dm6]	C	A	3.455e^-4	0.72	UTR_3_PRIME lmgB & 1 other DOWNSTREAM Acer & 2 others
2L	8004534	2L_8004534_SNP [dm3] 2L_8004534_SNP [dm6]	A	T	3.466e^-4	0.72	UPSTREAM Wwox DOWNSTREAM Spn28Dc INTERGENIC	TF binding site mE1_TFBS_cad
2L	9719671	2L_9719671_SNP [dm3] 2L_9719671_SNP [dm6]	C	T	3.468e^-4	0.72	INTRON Nckx30C
3L	857787	3L_857787_SNP [dm3] 3L_857787_SNP [dm6]	T	C	3.469e^-4	0.72	UPSTREAM dpr20 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2L	12836028	2L_12836028_SNP [dm3] 2L_12836028_SNP [dm6]	G	A	3.474e^-4	0.72	INTERGENIC
2L	7215290	2L_7215290_SNP [dm3] 2L_7215290_SNP [dm6]	A	T	3.474e^-4	0.72	INTRON CG13784
3L	3383280	3L_3383280_SNP [dm3] 3L_3383280_SNP [dm6]	G	A	3.488e^-4	0.722	INTERGENIC
3L	2143875	3L_2143875_DEL [dm3] 3L_2143875_DEL [dm6]	GGGAATCG	G	3.494e^-4	0.722	INTRON zormin
2R	11716778	2R_11716778_SNP [dm3] 2R_15829273_SNP [dm6]	T	G	3.496e^-4	0.722	INTRON tun & 1 other
2L	1473973	2L_1473973_SNP [dm3] 2L_1473973_SNP [dm6]	A	T	3.502e^-4	0.723	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4698344	2R_4698344_SNP [dm3] 2R_8810839_SNP [dm6]	G	A	3.514e^-4	0.724	INTRON sns	TF binding site mE1_TFBS_inv
3R	24077669	3R_24077669_SNP [dm3] 3R_28251947_SNP [dm6]	C	A	3.533e^-4	0.727	INTERGENIC
3R	10733499	3R_10733499_SNP [dm3] 3R_14907777_SNP [dm6]	T	C	3.533e^-4	0.727	INTERGENIC
3L	3384840	3L_3384840_SNP [dm3] 3L_3384840_SNP [dm6]	T	G	3.549e^-4	0.729	INTERGENIC
2L	8507887	2L_8507887_SNP [dm3] 2L_8507887_SNP [dm6]	G	T	3.552e^-4	0.729	INTERGENIC
3R	4938765	3R_4938765_SNP [dm3] 3R_9113043_SNP [dm6]	T	A	3.568e^-4	0.731	INTRON pum
2L	1625979	2L_1625979_SNP [dm3] 2L_1625979_SNP [dm6]	G	C	3.576e^-4	0.731	EXON CR44603
3L	14213218	3L_14213218_SNP [dm3] 3L_14220118_SNP [dm6]	C	G	3.579e^-4	0.731	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9211762	3L_9211762_SNP [dm3] 3L_9218662_SNP [dm6]	G	A	3.580e^-4	0.731	INTERGENIC
3L	9211765	3L_9211765_SNP [dm3] 3L_9218665_SNP [dm6]	G	A	3.580e^-4	0.731	INTERGENIC
2R	2964316	2R_2964316_SNP [dm3] 2R_7076811_SNP [dm6]	C	A	3.584e^-4	0.731	INTERGENIC
2R	7786621	2R_7786621_SNP [dm3] 2R_11899116_SNP [dm6]	T	C	3.590e^-4	0.731	UPSTREAM Zip48C INTRON MCPH1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	3312931	2L_3312931_SNP [dm3] 2L_3312931_SNP [dm6]	G	A	3.593e^-4	0.731	INTRON CG3277
3L	3384978	3L_3384978_SNP [dm3] 3L_3384978_SNP [dm6]	A	T	3.603e^-4	0.731	INTERGENIC
3L	11124242	3L_11124242_SNP [dm3] 3L_11131142_SNP [dm6]	G	A	3.605e^-4	0.731	SYNONYMOUS_CODING nol DOWNSTREAM CG32074 INTRON CG42575
2R	18453979	2R_18453979_SNP [dm3] 2R_22566474_SNP [dm6]	A	G	3.609e^-4	0.731	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6253280	3R_6253280_SNP [dm3] 3R_10427558_SNP [dm6]	T	A	3.609e^-4	0.731	INTERGENIC
2L	11209388	2L_11209388_SNP [dm3] 2L_11209388_SNP [dm6]	G	A	3.612e^-4	0.731	INTERGENIC	silencer mE1_HDAC_PRE
X	20442492	X_20442492_DEL [dm3] X_20571465_DEL [dm6]	CACC	C	3.622e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17193646	X_17193646_INS [dm3] X_17299613_INS [dm6]	A	AAA	3.629e^-4	0.732	INTRON CG5445 & 1 other
2R	12523322	2R_12523322_SNP [dm3] 2R_16635817_SNP [dm6]	C	T	3.631e^-4	0.732	INTRON Alk	TF binding site BDTNP1_TFBS_dl
2L	9571826	2L_9571826_SNP [dm3] 2L_9571826_SNP [dm6]	A	G	3.638e^-4	0.733	INTRON CG3838
2L	15810374	2L_15810374_SNP [dm3] 2L_15810374_SNP [dm6]	G	T	3.649e^-4	0.733	UPSTREAM CR44602 DOWNSTREAM CG42876 INTERGENIC
2L	15810410	2L_15810410_SNP [dm3] 2L_15810410_SNP [dm6]	A	G	3.649e^-4	0.733	UPSTREAM CR44602 DOWNSTREAM CG42876 INTERGENIC
3L	2139796	3L_2139796_SNP [dm3] 3L_2139796_SNP [dm6]	A	G	3.652e^-4	0.733	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2678589	3R_2678589_SNP [dm3] 3R_6852867_SNP [dm6]	A	G	3.654e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	21429529	3R_21429529_SNP [dm3] 3R_25603807_SNP [dm6]	A	C	3.672e^-4	0.733	UTR_3_PRIME msi INTRON ymp
3R	6265550	3R_6265550_SNP [dm3] 3R_10439828_SNP [dm6]	C	T	3.684e^-4	0.733	INTERGENIC
3R	16900187	3R_16900187_SNP [dm3] 3R_21074465_SNP [dm6]	C	T	3.686e^-4	0.733	INTRON dmrt93B
2R	6982787	2R_6982787_SNP [dm3] 2R_11095282_SNP [dm6]	G	A	3.686e^-4	0.733	INTRON luna
3R	2572760	3R_2572760_SNP [dm3] 3R_6747038_SNP [dm6]	T	G	3.686e^-4	0.733	DOWNSTREAM CG34297 INTERGENIC
3R	22886603	3R_22886603_SNP [dm3] 3R_27060881_SNP [dm6]	C	T	3.687e^-4	0.733	SYNONYMOUS_CODING Nep5
3L	8756935	3L_8756935_SNP [dm3] 3L_8763835_SNP [dm6]	C	G	3.688e^-4	0.733	INTRON Fhos
2R	2876642	2R_2876642_SNP [dm3] 2R_6989137_SNP [dm6]	T	C	3.696e^-4	0.733	DOWNSTREAM CG17002 INTERGENIC	transposable element FlyBase
3L	3383083	3L_3383083_SNP [dm3] 3L_3383083_SNP [dm6]	G	A	3.696e^-4	0.733	INTERGENIC
3L	12502722	3L_12502722_SNP [dm3] 3L_12509622_SNP [dm6]	T	C	3.697e^-4	0.733	NON_SYNONYMOUS_CODING sti	TF binding site mE1_TFBS_sens
3L	16144844	3L_16144844_SNP [dm3] 3L_16151744_SNP [dm6]	C	T	3.700e^-4	0.733	INTRON CG5151
X	6204204	X_6204204_SNP [dm3] X_6310171_SNP [dm6]	G	A	3.703e^-4	0.733	INTRON CG15894
X	17678472	X_17678472_SNP [dm3] X_17784439_SNP [dm6]	T	A	3.723e^-4	0.736	INTERGENIC
3R	16692895	3R_16692895_SNP [dm3] 3R_20867173_SNP [dm6]	T	C	3.724e^-4	0.736	UPSTREAM CG3822 INTERGENIC
2L	14918801	2L_14918801_SNP [dm3] 2L_14918801_SNP [dm6]	A	G	3.731e^-4	0.737	INTRON CG42313
2R	11880664	2R_11880664_SNP [dm3] 2R_15993159_SNP [dm6]	C	T	3.736e^-4	0.737	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site mE1_TFBS_sens
2R	17084975	2R_17084975_SNP [dm3] 2R_21197470_SNP [dm6]	A	C	3.742e^-4	0.737	INTRON Lapsyn
2R	18680671	2R_18680671_SNP [dm3] 2R_22793166_SNP [dm6]	G	T	3.748e^-4	0.738	INTRON CG42260
X	16886324	X_16886324_SNP [dm3] X_16992291_SNP [dm6]	C	T	3.753e^-4	0.738	INTRON CG45002
3L	3384839	3L_3384839_SNP [dm3] 3L_3384839_SNP [dm6]	C	A	3.756e^-4	0.738	INTERGENIC
3L	8687554	3L_8687554_SNP [dm3] 3L_8694454_SNP [dm6]	T	C	3.762e^-4	0.738	INTERGENIC
X	8965656	X_8965656_SNP [dm3] X_9071623_SNP [dm6]	A	G	3.764e^-4	0.738	SYNONYMOUS_CODING CG44325 UPSTREAM CG10970 DOWNSTREAM CG44325
3L	3383452	3L_3383452_SNP [dm3] 3L_3383452_SNP [dm6]	T	C	3.773e^-4	0.738	INTERGENIC
3L	16442280	3L_16442280_SNP [dm3] 3L_16449180_SNP [dm6]	C	A	3.773e^-4	0.738	INTRON CG33158 & 1 other
2L	7175083	2L_7175083_SNP [dm3] 2L_7175083_SNP [dm6]	T	C	3.795e^-4	0.741	UPSTREAM CR44610 INTERGENIC
3R	5742631	3R_5742631_SNP [dm3] 3R_9916909_SNP [dm6]	G	C	3.802e^-4	0.741	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3593731	2L_3593731_INS [dm3] 2L_3593731_INS [dm6]	A	AA	3.807e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	975731	3L_975731_SNP [dm3] 3L_975731_SNP [dm6]	C	T	3.815e^-4	0.741	INTRON Glut1
2R	18260231	2R_18260231_SNP [dm3] 2R_22372726_SNP [dm6]	A	G	3.821e^-4	0.741	DOWNSTREAM CR44759 INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	5631182	2L_5631182_SNP [dm3] 2L_5631182_SNP [dm6]	C	G	3.821e^-4	0.741	DOWNSTREAM CR44822 INTRON CG31646	TF binding site BDTNP1_TFBS_twi
X	17255535	X_17255535_SNP [dm3] X_17361502_SNP [dm6]	A	T	3.825e^-4	0.741	INTERGENIC
2R	7787754	2R_7787754_SNP [dm3] 2R_11900249_SNP [dm6]	C	T	3.826e^-4	0.741	SYNONYMOUS_CODING Zip48C INTRON MCPH1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8004489	2L_8004489_SNP [dm3] 2L_8004489_SNP [dm6]	C	T	3.832e^-4	0.741	UPSTREAM Wwox DOWNSTREAM Spn28Dc INTERGENIC	TF binding site mE1_TFBS_cad
2L	8004532	2L_8004532_SNP [dm3] 2L_8004532_SNP [dm6]	C	A	3.832e^-4	0.741	UPSTREAM Wwox DOWNSTREAM Spn28Dc INTERGENIC	TF binding site mE1_TFBS_cad
2L	8004546	2L_8004546_SNP [dm3] 2L_8004546_SNP [dm6]	T	C	3.832e^-4	0.741	UPSTREAM Wwox DOWNSTREAM Spn28Dc INTERGENIC	TF binding site mE1_TFBS_cad
3L	8682671	3L_8682671_SNP [dm3] 3L_8689571_SNP [dm6]	T	A	3.843e^-4	0.741	INTERGENIC
3R	9368635	3R_9368635_INS [dm3] 3R_13542913_INS [dm6]	C	CC	3.853e^-4	0.741	INTERGENIC
3R	23237298	3R_23237298_SNP [dm3] 3R_27411576_SNP [dm6]	C	T	3.854e^-4	0.741	INTRON side
2R	19387120	2R_19387120_SNP [dm3] 2R_23499597_SNP [dm6]	A	G	3.855e^-4	0.741	UPSTREAM CG13558 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	8457818	2R_8457818_SNP [dm3] 2R_12570313_SNP [dm6]	C	T	3.863e^-4	0.741	UPSTREAM stil & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2479489	X_2479489_DEL [dm3] X_2585456_DEL [dm6]	TA	G	3.873e^-4	0.741	UPSTREAM wds & 1 other INTRON CG13760	TF binding site BDTNP1_TFBS_dl
X	16844720	X_16844720_SNP [dm3] X_16950687_SNP [dm6]	A	T	3.874e^-4	0.741	INTRON RhoGAP15B
X	7004479	X_7004479_SNP [dm3] X_7110446_SNP [dm6]	A	C	3.882e^-4	0.741	UPSTREAM fz4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	3786853	3L_3786853_SNP [dm3] 3L_3786853_SNP [dm6]	C	A	3.885e^-4	0.741	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3384963	3L_3384963_SNP [dm3] 3L_3384963_SNP [dm6]	G	T	3.885e^-4	0.741	INTERGENIC
3R	9679973	3R_9679973_SNP [dm3] 3R_13854251_SNP [dm6]	A	C	3.897e^-4	0.741	DOWNSTREAM CG14362 INTERGENIC
2L	9098562	2L_9098562_SNP [dm3] 2L_9098562_SNP [dm6]	C	A	3.903e^-4	0.741	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
3R	19170978	3R_19170978_SNP [dm3] 3R_23345256_SNP [dm6]	C	A	3.904e^-4	0.741	INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
X	2514411	X_2514411_SNP [dm3] X_2620378_SNP [dm6]	T	C	3.904e^-4	0.741	SYNONYMOUS_CODING Seipin UPSTREAM Tsp3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3384899	3L_3384899_SNP [dm3] 3L_3384899_SNP [dm6]	T	A	3.907e^-4	0.741	INTERGENIC
3L	3384900	3L_3384900_SNP [dm3] 3L_3384900_SNP [dm6]	A	G	3.907e^-4	0.741	INTERGENIC
2R	9605648	2R_9605648_SNP [dm3] 2R_13718143_SNP [dm6]	A	T	3.911e^-4	0.741	INTRON fas
3L	9211400	3L_9211400_SNP [dm3] 3L_9218300_SNP [dm6]	G	A	3.924e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	8410531	2R_8410531_SNP [dm3] 2R_12523026_SNP [dm6]	A	G	3.925e^-4	0.741	DOWNSTREAM CG33632 INTERGENIC	transposable element FlyBase
2L	3827873	2L_3827873_SNP [dm3] 2L_3827873_SNP [dm6]	A	T	3.926e^-4	0.741	DOWNSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3384999	3L_3384999_SNP [dm3] 3L_3384999_SNP [dm6]	C	T	3.929e^-4	0.741	INTERGENIC
3R	10395831	3R_10395831_SNP [dm3] 3R_14570109_SNP [dm6]	G	T	3.929e^-4	0.741	UPSTREAM Cys DOWNSTREAM CG7987 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7316249	3R_7316249_SNP [dm3] 3R_11490527_SNP [dm6]	A	T	3.931e^-4	0.741	INTERGENIC
2R	7787736	2R_7787736_SNP [dm3] 2R_11900231_SNP [dm6]	C	A	3.931e^-4	0.741	SYNONYMOUS_CODING Zip48C INTRON MCPH1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15810406	2L_15810406_SNP [dm3] 2L_15810406_SNP [dm6]	A	T	3.933e^-4	0.741	UPSTREAM CR44602 DOWNSTREAM CG42876 INTERGENIC
2R	16895331	2R_16895331_SNP [dm3] 2R_21007826_SNP [dm6]	A	G	3.943e^-4	0.742	SYNONYMOUS_CODING CG30291 DOWNSTREAM CG10543
2L	9718666	2L_9718666_SNP [dm3] 2L_9718666_SNP [dm6]	C	A	3.945e^-4	0.742	INTRON Nckx30C
3L	17901219	3L_17901219_SNP [dm3] 3L_17908119_SNP [dm6]	A	G	3.949e^-4	0.742	UPSTREAM CG14353 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
3R	6883585	3R_6883585_INS [dm3] 3R_11057863_INS [dm6]	C	CGCTGAAAC	3.965e^-4	0.743	INTERGENIC
2L	3589046	2L_3589046_SNP [dm3] 2L_3589046_SNP [dm6]	C	A	3.967e^-4	0.743	EXON CR43823	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens

Missing results

By genomic position
Variant impact
Gene name

Cuticul_NI_7 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results