DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.096e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.04091

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	13.1182	0.0014

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2430 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	3.247e^-15	4.457e^-9	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	4.752e^-15	4.457e^-9	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	9.055e^-15	5.662e^-9	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	1.567e^-14	7.349e^-9	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	5.973e^-14	2.073e^-8	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	6.631e^-14	2.073e^-8	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	1.129e^-13	3.026e^-8	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	1.468e^-13	3.442e^-8	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	3.560e^-13	6.678e^-8	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	3.560e^-13	6.678e^-8	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	5.407e^-13	9.220e^-8	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	7.157e^-13	1.104e^-7	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	7.652e^-13	1.104e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	9.240e^-13	1.238e^-7	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	1.143e^-12	1.430e^-7	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	1.563e^-12	1.790e^-7	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	1.623e^-12	1.790e^-7	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	2.874e^-12	2.994e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	4.657e^-12	4.597e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	5.035e^-12	4.722e^-7	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	5.944e^-12	5.309e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	1.091e^-11	9.303e^-7	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	1.170e^-11	9.543e^-7	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	1.230e^-11	9.610e^-7	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	2.127e^-11	1.596e^-6	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	2.586e^-11	1.866e^-6	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	3.023e^-11	2.100e^-6	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	4.982e^-11	3.338e^-6	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	8.958e^-11	5.680e^-6	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	9.085e^-11	5.680e^-6	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	1.737e^-10	1.033e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	1.762e^-10	1.033e^-5	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	2.346e^-10	1.333e^-5	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	2.881e^-10	1.589e^-5	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	3.532e^-10	1.861e^-5	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	3.572e^-10	1.861e^-5	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	4.429e^-10	2.245e^-5	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8525183	2L_8525183_SNP [dm3] 2L_8525183_SNP [dm6]	G	T	5.215e^-10	2.574e^-5	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	5.574e^-10	2.617e^-5	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	5.582e^-10	2.617e^-5	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	8.327e^-10	3.809e^-5	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	9.507e^-10	4.246e^-5	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	1.239e^-9	5.403e^-5	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8523105	2L_8523105_SNP [dm3] 2L_8523105_SNP [dm6]	G	C	1.689e^-9	7.041e^-5	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8523133	2L_8523133_SNP [dm3] 2L_8523133_SNP [dm6]	G	A	1.689e^-9	7.041e^-5	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8525341	2L_8525341_SNP [dm3] 2L_8525341_SNP [dm6]	C	A	3.303e^-9	1.347e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8528806	2L_8528806_SNP [dm3] 2L_8528806_SNP [dm6]	A	C	3.431e^-9	1.369e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8525339	2L_8525339_SNP [dm3] 2L_8525339_SNP [dm6]	G	A	3.829e^-9	1.496e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525344	2L_8525344_SNP [dm3] 2L_8525344_SNP [dm6]	G	A	1.049e^-8	3.935e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525346	2L_8525346_SNP [dm3] 2L_8525346_SNP [dm6]	C	T	1.049e^-8	3.935e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525349	2L_8525349_SNP [dm3] 2L_8525349_SNP [dm6]	C	T	1.450e^-8	5.332e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525348	2L_8525348_SNP [dm3] 2L_8525348_SNP [dm6]	T	A	1.840e^-8	6.639e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8523117	2L_8523117_SNP [dm3] 2L_8523117_SNP [dm6]	A	G	2.120e^-8	7.502e^-4	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8521004	2L_8521004_SNP [dm3] 2L_8521004_SNP [dm6]	C	A	2.908e^-8	0.001	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8530229	2L_8530229_SNP [dm3] 2L_8530229_SNP [dm6]	G	A	3.725e^-8	0.001	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8515600	2L_8515600_SNP [dm3] 2L_8515600_SNP [dm6]	T	C	4.228e^-8	0.001	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529262	2L_8529262_SNP [dm3] 2L_8529262_SNP [dm6]	T	C	5.156e^-8	0.002	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	5.506e^-8	0.002	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	5.924e^-8	0.002	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8517273	2L_8517273_SNP [dm3] 2L_8517273_SNP [dm6]	A	G	6.319e^-8	0.002	NON_SYNONYMOUS_CODING mRpL51 UPSTREAM CG13090 DOWNSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8530244	2L_8530244_SNP [dm3] 2L_8530244_SNP [dm6]	G	A	7.031e^-8	0.002	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8515461	2L_8515461_SNP [dm3] 2L_8515461_SNP [dm6]	T	C	1.304e^-7	0.004	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529430	2L_8529430_SNP [dm3] 2L_8529430_SNP [dm6]	T	A	1.334e^-7	0.004	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	1.498e^-7	0.004	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8515035	2L_8515035_SNP [dm3] 2L_8515035_SNP [dm6]	G	T	1.568e^-7	0.005	UPSTREAM PIG-U & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	1.734e^-7	0.005	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8513167	2L_8513167_SNP [dm3] 2L_8513167_SNP [dm6]	C	T	2.026e^-7	0.006	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8514835	2L_8514835_SNP [dm3] 2L_8514835_SNP [dm6]	A	T	2.045e^-7	0.006	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5735501	2R_5735501_SNP [dm3] 2R_9847996_SNP [dm6]	T	A	2.586e^-7	0.007	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8520815	2L_8520815_SNP [dm3] 2L_8520815_SNP [dm6]	T	C	3.036e^-7	0.008	NON_SYNONYMOUS_CODING CG13091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	3.341e^-7	0.009	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515482	2L_8515482_SNP [dm3] 2L_8515482_SNP [dm6]	C	T	3.737e^-7	0.01	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529353	2L_8529353_DEL [dm3] 2L_8529353_DEL [dm6]	ATAAAAA	A	3.930e^-7	0.01	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_prd
2L	8530204	2L_8530204_SNP [dm3] 2L_8530204_SNP [dm6]	A	T	4.141e^-7	0.01	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	4.872e^-7	0.012	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	4.872e^-7	0.012	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5763605	2R_5763605_SNP [dm3] 2R_9876100_SNP [dm6]	T	G	5.408e^-7	0.013	UTR_3_PRIME CG12744 DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8530374	2L_8530374_SNP [dm3] 2L_8530374_SNP [dm6]	T	C	5.554e^-7	0.013	INTRON CG17834	TF binding site mE1_TFBS_HSA
2L	8515387	2L_8515387_SNP [dm3] 2L_8515387_SNP [dm6]	C	T	5.698e^-7	0.014	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515386	2L_8515386_SNP [dm3] 2L_8515386_SNP [dm6]	T	C	6.376e^-7	0.015	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8503802	2L_8503802_SNP [dm3] 2L_8503802_SNP [dm6]	A	T	6.621e^-7	0.015	INTRON Dh31
2L	8515377	2L_8515377_SNP [dm3] 2L_8515377_SNP [dm6]	T	C	6.823e^-7	0.016	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515362	2L_8515362_SNP [dm3] 2L_8515362_SNP [dm6]	T	G	7.209e^-7	0.016	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8511667	2L_8511667_SNP [dm3] 2L_8511667_SNP [dm6]	C	G	9.031e^-7	0.02	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8529328	2L_8529328_SNP [dm3] 2L_8529328_SNP [dm6]	G	A	9.528e^-7	0.021	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2L	8515266	2L_8515266_SNP [dm3] 2L_8515266_SNP [dm6]	A	G	1.014e^-6	0.022	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8503801	2L_8503801_SNP [dm3] 2L_8503801_SNP [dm6]	G	A	1.083e^-6	0.023	INTRON Dh31
2L	8512797	2L_8512797_SNP [dm3] 2L_8512797_SNP [dm6]	G	T	1.239e^-6	0.026	UPSTREAM CG13096 INTRON CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8529275	2L_8529275_SNP [dm3] 2L_8529275_SNP [dm6]	A	G	1.241e^-6	0.026	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8523537	2L_8523537_SNP [dm3] 2L_8523537_SNP [dm6]	C	A	1.266e^-6	0.026	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8512026	2L_8512026_SNP [dm3] 2L_8512026_SNP [dm6]	G	A	1.313e^-6	0.027	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8514798	2L_8514798_SNP [dm3] 2L_8514798_SNP [dm6]	C	T	1.330e^-6	0.027	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18023694	3L_18023694_SNP [dm3] 3L_18030594_SNP [dm6]	A	G	1.414e^-6	0.028	INTRON Eip75B
3L	10401132	3L_10401132_SNP [dm3] 3L_10408032_SNP [dm6]	T	G	1.417e^-6	0.028	INTERGENIC
2R	5741733	2R_5741733_SNP [dm3] 2R_9854228_SNP [dm6]	A	G	1.440e^-6	0.028	INTRON CG1516	TF binding site mE1_TFBS_cad
2R	5735181	2R_5735181_SNP [dm3] 2R_9847676_SNP [dm6]	T	G	1.638e^-6	0.032	UPSTREAM CG1671 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	5735502	2R_5735502_SNP [dm3] 2R_9847997_SNP [dm6]	C	A	1.823e^-6	0.035	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	8467841	2R_8467841_SNP [dm3] 2R_12580336_SNP [dm6]	G	A	1.886e^-6	0.036	NON_SYNONYMOUS_CODING Sin3A
2L	8529270	2L_8529270_SNP [dm3] 2L_8529270_SNP [dm6]	C	A	1.965e^-6	0.037	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8524608	2L_8524608_SNP [dm3] 2L_8524608_SNP [dm6]	C	T	2.036e^-6	0.038	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad

Showing 1 to 100 of 1,000 entries

Previous1 2 3 4 5…10Next

Missing results

By genomic position
Variant impact
Gene name

Cuticul_x_C22_1_l3 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results