DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.096e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.04091

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	13.1182	0.0014

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2430 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	3.247e^-15	4.457e^-9	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	4.752e^-15	4.457e^-9	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	9.055e^-15	5.662e^-9	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	1.567e^-14	7.349e^-9	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	5.973e^-14	2.073e^-8	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	6.631e^-14	2.073e^-8	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	1.129e^-13	3.026e^-8	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	1.468e^-13	3.442e^-8	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	3.560e^-13	6.678e^-8	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	3.560e^-13	6.678e^-8	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	5.407e^-13	9.220e^-8	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	7.157e^-13	1.104e^-7	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	7.652e^-13	1.104e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	9.240e^-13	1.238e^-7	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	1.143e^-12	1.430e^-7	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	1.563e^-12	1.790e^-7	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	1.623e^-12	1.790e^-7	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	2.874e^-12	2.994e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	4.657e^-12	4.597e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	5.035e^-12	4.722e^-7	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	5.944e^-12	5.309e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	1.091e^-11	9.303e^-7	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	1.170e^-11	9.543e^-7	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	1.230e^-11	9.610e^-7	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	2.127e^-11	1.596e^-6	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	2.586e^-11	1.866e^-6	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	3.023e^-11	2.100e^-6	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	4.982e^-11	3.338e^-6	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	8.958e^-11	5.680e^-6	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	9.085e^-11	5.680e^-6	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	1.737e^-10	1.033e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	1.762e^-10	1.033e^-5	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	2.346e^-10	1.333e^-5	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	2.881e^-10	1.589e^-5	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	3.532e^-10	1.861e^-5	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	3.572e^-10	1.861e^-5	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	4.429e^-10	2.245e^-5	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8525183	2L_8525183_SNP [dm3] 2L_8525183_SNP [dm6]	G	T	5.215e^-10	2.574e^-5	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	5.574e^-10	2.617e^-5	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	5.582e^-10	2.617e^-5	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	8.327e^-10	3.809e^-5	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	9.507e^-10	4.246e^-5	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	1.239e^-9	5.403e^-5	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8523105	2L_8523105_SNP [dm3] 2L_8523105_SNP [dm6]	G	C	1.689e^-9	7.041e^-5	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8523133	2L_8523133_SNP [dm3] 2L_8523133_SNP [dm6]	G	A	1.689e^-9	7.041e^-5	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8525341	2L_8525341_SNP [dm3] 2L_8525341_SNP [dm6]	C	A	3.303e^-9	1.347e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8528806	2L_8528806_SNP [dm3] 2L_8528806_SNP [dm6]	A	C	3.431e^-9	1.369e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8525339	2L_8525339_SNP [dm3] 2L_8525339_SNP [dm6]	G	A	3.829e^-9	1.496e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525344	2L_8525344_SNP [dm3] 2L_8525344_SNP [dm6]	G	A	1.049e^-8	3.935e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525346	2L_8525346_SNP [dm3] 2L_8525346_SNP [dm6]	C	T	1.049e^-8	3.935e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525349	2L_8525349_SNP [dm3] 2L_8525349_SNP [dm6]	C	T	1.450e^-8	5.332e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525348	2L_8525348_SNP [dm3] 2L_8525348_SNP [dm6]	T	A	1.840e^-8	6.639e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8523117	2L_8523117_SNP [dm3] 2L_8523117_SNP [dm6]	A	G	2.120e^-8	7.502e^-4	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8521004	2L_8521004_SNP [dm3] 2L_8521004_SNP [dm6]	C	A	2.908e^-8	0.001	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8530229	2L_8530229_SNP [dm3] 2L_8530229_SNP [dm6]	G	A	3.725e^-8	0.001	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8515600	2L_8515600_SNP [dm3] 2L_8515600_SNP [dm6]	T	C	4.228e^-8	0.001	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529262	2L_8529262_SNP [dm3] 2L_8529262_SNP [dm6]	T	C	5.156e^-8	0.002	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	5.506e^-8	0.002	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	5.924e^-8	0.002	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8517273	2L_8517273_SNP [dm3] 2L_8517273_SNP [dm6]	A	G	6.319e^-8	0.002	NON_SYNONYMOUS_CODING mRpL51 UPSTREAM CG13090 DOWNSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8530244	2L_8530244_SNP [dm3] 2L_8530244_SNP [dm6]	G	A	7.031e^-8	0.002	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8515461	2L_8515461_SNP [dm3] 2L_8515461_SNP [dm6]	T	C	1.304e^-7	0.004	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529430	2L_8529430_SNP [dm3] 2L_8529430_SNP [dm6]	T	A	1.334e^-7	0.004	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	1.498e^-7	0.004	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8515035	2L_8515035_SNP [dm3] 2L_8515035_SNP [dm6]	G	T	1.568e^-7	0.005	UPSTREAM PIG-U & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	1.734e^-7	0.005	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8513167	2L_8513167_SNP [dm3] 2L_8513167_SNP [dm6]	C	T	2.026e^-7	0.006	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8514835	2L_8514835_SNP [dm3] 2L_8514835_SNP [dm6]	A	T	2.045e^-7	0.006	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5735501	2R_5735501_SNP [dm3] 2R_9847996_SNP [dm6]	T	A	2.586e^-7	0.007	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8520815	2L_8520815_SNP [dm3] 2L_8520815_SNP [dm6]	T	C	3.036e^-7	0.008	NON_SYNONYMOUS_CODING CG13091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	3.341e^-7	0.009	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515482	2L_8515482_SNP [dm3] 2L_8515482_SNP [dm6]	C	T	3.737e^-7	0.01	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529353	2L_8529353_DEL [dm3] 2L_8529353_DEL [dm6]	ATAAAAA	A	3.930e^-7	0.01	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_prd
2L	8530204	2L_8530204_SNP [dm3] 2L_8530204_SNP [dm6]	A	T	4.141e^-7	0.01	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	4.872e^-7	0.012	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	4.872e^-7	0.012	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5763605	2R_5763605_SNP [dm3] 2R_9876100_SNP [dm6]	T	G	5.408e^-7	0.013	UTR_3_PRIME CG12744 DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8530374	2L_8530374_SNP [dm3] 2L_8530374_SNP [dm6]	T	C	5.554e^-7	0.013	INTRON CG17834	TF binding site mE1_TFBS_HSA
2L	8515387	2L_8515387_SNP [dm3] 2L_8515387_SNP [dm6]	C	T	5.698e^-7	0.014	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515386	2L_8515386_SNP [dm3] 2L_8515386_SNP [dm6]	T	C	6.376e^-7	0.015	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8503802	2L_8503802_SNP [dm3] 2L_8503802_SNP [dm6]	A	T	6.621e^-7	0.015	INTRON Dh31
2L	8515377	2L_8515377_SNP [dm3] 2L_8515377_SNP [dm6]	T	C	6.823e^-7	0.016	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515362	2L_8515362_SNP [dm3] 2L_8515362_SNP [dm6]	T	G	7.209e^-7	0.016	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8511667	2L_8511667_SNP [dm3] 2L_8511667_SNP [dm6]	C	G	9.031e^-7	0.02	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8529328	2L_8529328_SNP [dm3] 2L_8529328_SNP [dm6]	G	A	9.528e^-7	0.021	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2L	8515266	2L_8515266_SNP [dm3] 2L_8515266_SNP [dm6]	A	G	1.014e^-6	0.022	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8503801	2L_8503801_SNP [dm3] 2L_8503801_SNP [dm6]	G	A	1.083e^-6	0.023	INTRON Dh31
2L	8512797	2L_8512797_SNP [dm3] 2L_8512797_SNP [dm6]	G	T	1.239e^-6	0.026	UPSTREAM CG13096 INTRON CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8529275	2L_8529275_SNP [dm3] 2L_8529275_SNP [dm6]	A	G	1.241e^-6	0.026	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8523537	2L_8523537_SNP [dm3] 2L_8523537_SNP [dm6]	C	A	1.266e^-6	0.026	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8512026	2L_8512026_SNP [dm3] 2L_8512026_SNP [dm6]	G	A	1.313e^-6	0.027	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8514798	2L_8514798_SNP [dm3] 2L_8514798_SNP [dm6]	C	T	1.330e^-6	0.027	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18023694	3L_18023694_SNP [dm3] 3L_18030594_SNP [dm6]	A	G	1.414e^-6	0.028	INTRON Eip75B
3L	10401132	3L_10401132_SNP [dm3] 3L_10408032_SNP [dm6]	T	G	1.417e^-6	0.028	INTERGENIC
2R	5741733	2R_5741733_SNP [dm3] 2R_9854228_SNP [dm6]	A	G	1.440e^-6	0.028	INTRON CG1516	TF binding site mE1_TFBS_cad
2R	5735181	2R_5735181_SNP [dm3] 2R_9847676_SNP [dm6]	T	G	1.638e^-6	0.032	UPSTREAM CG1671 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	5735502	2R_5735502_SNP [dm3] 2R_9847997_SNP [dm6]	C	A	1.823e^-6	0.035	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	8467841	2R_8467841_SNP [dm3] 2R_12580336_SNP [dm6]	G	A	1.886e^-6	0.036	NON_SYNONYMOUS_CODING Sin3A
2L	8529270	2L_8529270_SNP [dm3] 2L_8529270_SNP [dm6]	C	A	1.965e^-6	0.037	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8524608	2L_8524608_SNP [dm3] 2L_8524608_SNP [dm6]	C	T	2.036e^-6	0.038	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2L	8529795	2L_8529795_SNP [dm3] 2L_8529795_SNP [dm6]	G	T	2.068e^-6	0.038	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8531131	2L_8531131_SNP [dm3] 2L_8531131_SNP [dm6]	C	A	2.115e^-6	0.039	INTRON CG17834
2R	5735512	2R_5735512_SNP [dm3] 2R_9848007_SNP [dm6]	C	T	2.194e^-6	0.04	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8529325	2L_8529325_SNP [dm3] 2L_8529325_SNP [dm6]	G	T	2.372e^-6	0.043	START_GAINED CG17834 UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2L	8515314	2L_8515314_SNP [dm3] 2L_8515314_SNP [dm6]	A	C	2.497e^-6	0.045	UPSTREAM CG13097 INTRON PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8512024	2L_8512024_SNP [dm3] 2L_8512024_SNP [dm6]	T	G	2.711e^-6	0.048	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	15071793	2R_15071793_SNP [dm3] 2R_19184288_SNP [dm6]	A	T	2.838e^-6	0.049	INTRON hppy
2L	8529492	2L_8529492_SNP [dm3] 2L_8529492_SNP [dm6]	T	A	2.846e^-6	0.049	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3L	18020832	3L_18020832_SNP [dm3] 3L_18027732_SNP [dm6]	T	A	2.852e^-6	0.049	INTRON Eip75B
2R	5734458	2R_5734458_SNP [dm3] 2R_9846953_SNP [dm6]	T	G	2.961e^-6	0.05	UPSTREAM Orc6 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8512075	2L_8512075_SNP [dm3] 2L_8512075_SNP [dm6]	A	T	3.068e^-6	0.052	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8510992	2L_8510992_SNP [dm3] 2L_8510992_SNP [dm6]	G	T	3.164e^-6	0.053	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529982	2L_8529982_SNP [dm3] 2L_8529982_SNP [dm6]	A	T	3.316e^-6	0.055	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8633004	3L_8633004_SNP [dm3] 3L_8639904_SNP [dm6]	G	A	3.411e^-6	0.056	UPSTREAM Cpr66D INTERGENIC
2R	18015420	2R_18015420_SNP [dm3] 2R_22127915_SNP [dm6]	T	C	3.429e^-6	0.056	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D
3L	3255154	3L_3255154_INS [dm3] 3L_3255154_INS [dm6]	C	CCC	3.442e^-6	0.056	DOWNSTREAM CR43626 INTERGENIC
2R	5731332	2R_5731332_SNP [dm3] 2R_9843827_SNP [dm6]	C	T	3.482e^-6	0.056	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	5762919	2R_5762919_SNP [dm3] 2R_9875414_SNP [dm6]	G	A	3.646e^-6	0.058	UTR_5_PRIME CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB INTRON CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11264113	2R_11264113_SNP [dm3] 2R_15376608_SNP [dm6]	G	T	3.656e^-6	0.058	UPSTREAM CR43105 & 1 other DOWNSTREAM dup INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	8482186	2R_8482186_SNP [dm3] 2R_12594681_SNP [dm6]	C	T	3.683e^-6	0.058	UPSTREAM CR45279 INTRON Amph EXON CR43909	TF binding site BDTNP1_TFBS_dl
3L	14162808	3L_14162808_SNP [dm3] 3L_14169708_SNP [dm6]	A	C	3.890e^-6	0.06	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11264129	2R_11264129_SNP [dm3] 2R_15376624_SNP [dm6]	A	C	3.929e^-6	0.06	UTR_3_PRIME dup UPSTREAM CR43105 & 1 other	TF binding site BDTNP1_TFBS_hb
2L	8512102	2L_8512102_SNP [dm3] 2L_8512102_SNP [dm6]	T	C	4.319e^-6	0.066	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	17651763	3R_17651763_SNP [dm3] 3R_21826041_SNP [dm6]	G	A	4.546e^-6	0.069	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
3L	8633026	3L_8633026_SNP [dm3] 3L_8639926_SNP [dm6]	G	A	4.609e^-6	0.069	UPSTREAM Cpr66D INTERGENIC
2L	7171894	2L_7171894_SNP [dm3] 2L_7171894_SNP [dm6]	C	A	4.650e^-6	0.069	INTERGENIC
2L	8512125	2L_8512125_INS [dm3] 2L_8512125_INS [dm6]	T	TCGATTCAAACTCATGCTAA...	4.709e^-6	0.069	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	5714614	2R_5714614_SNP [dm3] 2R_9827109_SNP [dm6]	T	C	4.716e^-6	0.069	NON_SYNONYMOUS_CODING dila DOWNSTREAM hebe	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7171871	2L_7171871_DEL [dm3] 2L_7171871_DEL [dm6]	AGTAA	A	4.764e^-6	0.069	INTERGENIC
2R	5735690	2R_5735690_SNP [dm3] 2R_9848185_SNP [dm6]	A	G	5.094e^-6	0.073	UPSTREAM Prosalpha7 INTRON CG1671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	3210619	2L_3210619_SNP [dm3] 2L_3210619_SNP [dm6]	A	T	5.269e^-6	0.075	EXON CR45336
2L	8512119	2L_8512119_INS [dm3] 2L_8512119_INS [dm6]	T	TATTAGTAGAGACAGAC...	5.541e^-6	0.079	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8512136	2L_8512136_INS [dm3] 2L_8512136_INS [dm6]	A	AAAACATTAACATATTAACT...	5.913e^-6	0.083	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	9579123	3L_9579123_SNP [dm3] 3L_9586023_SNP [dm6]	G	A	6.094e^-6	0.084	INTRON CG42673
3L	9579125	3L_9579125_SNP [dm3] 3L_9586025_SNP [dm6]	G	A	6.094e^-6	0.084	INTRON CG42673
3L	11862232	3L_11862232_SNP [dm3] 3L_11869132_SNP [dm6]	G	A	6.099e^-6	0.084	INTRON CG44837
2L	8525164	2L_8525164_SNP [dm3] 2L_8525164_SNP [dm6]	C	T	6.221e^-6	0.085	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	1240283	2L_1240283_SNP [dm3] 2L_1240283_SNP [dm6]	C	T	6.349e^-6	0.086	SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo
3L	8633024	3L_8633024_SNP [dm3] 3L_8639924_SNP [dm6]	A	G	6.521e^-6	0.088	UPSTREAM Cpr66D INTERGENIC
2R	11264106	2R_11264106_SNP [dm3] 2R_15376601_SNP [dm6]	T	C	6.650e^-6	0.089	UPSTREAM CR43105 & 1 other DOWNSTREAM dup INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	18015452	2R_18015452_SNP [dm3] 2R_22127947_SNP [dm6]	A	G	6.724e^-6	0.089	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad
2L	10704084	2L_10704084_SNP [dm3] 2L_10704084_SNP [dm6]	A	G	6.922e^-6	0.091	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2
2L	2892277	2L_2892277_SNP [dm3] 2L_2892277_SNP [dm6]	A	T	7.203e^-6	0.094	INTRON lilli
2L	8514725	2L_8514725_SNP [dm3] 2L_8514725_SNP [dm6]	C	T	7.439e^-6	0.097	SYNONYMOUS_CODING CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20193568	2R_20193568_SNP [dm3] 2R_24306045_SNP [dm6]	G	A	7.779e^-6	0.1	UTR_5_PRIME betaTub60D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	9621632	3L_9621632_SNP [dm3] 3L_9628532_SNP [dm6]	G	A	7.808e^-6	0.1	SYNONYMOUS_CODING Or67b UPSTREAM CG8336
2L	8531564	2L_8531564_SNP [dm3] 2L_8531564_SNP [dm6]	A	G	8.263e^-6	0.105	INTRON CG17834
3L	18024424	3L_18024424_SNP [dm3] 3L_18031324_SNP [dm6]	C	T	8.456e^-6	0.107	INTRON Eip75B
2R	5736012	2R_5736012_SNP [dm3] 2R_9848507_SNP [dm6]	G	A	8.551e^-6	0.108	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5721479	2R_5721479_SNP [dm3] 2R_9833974_SNP [dm6]	G	C	8.896e^-6	0.111	UPSTREAM hebe INTRON hebe	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8527887	2L_8527887_SNP [dm3] 2L_8527887_SNP [dm6]	C	A	8.914e^-6	0.111	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5760716	2R_5760716_SNP [dm3] 2R_9873211_SNP [dm6]	C	T	9.437e^-6	0.116	INTRON cbx & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_sens
3L	18026116	3L_18026116_SNP [dm3] 3L_18033016_SNP [dm6]	A	G	9.545e^-6	0.117	INTRON Eip75B
2L	8529408	2L_8529408_SNP [dm3] 2L_8529408_SNP [dm6]	G	A	1.016e^-5	0.124	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2R	17316615	2R_17316615_SNP [dm3] 2R_21429110_SNP [dm6]	G	A	1.066e^-5	0.129	INTRON Sdc	TF binding site BDTNP1_TFBS_sna
3R	20013489	3R_20013489_SNP [dm3] 3R_24187767_SNP [dm6]	G	A	1.087e^-5	0.131	UTR_3_PRIME CG5515 & 1 other	TF binding site mE1_TFBS_sens
3R	8050452	3R_8050452_SNP [dm3] 3R_12224730_SNP [dm6]	A	G	1.099e^-5	0.131	SYNONYMOUS_CODING CG17404 UPSTREAM CR43477 DOWNSTREAM CG10014 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8522146	3L_8522146_SNP [dm3] 3L_8529046_SNP [dm6]	T	A	1.204e^-5	0.143	INTRON foi
2L	9316308	2L_9316308_SNP [dm3] 2L_9316308_SNP [dm6]	T	C	1.387e^-5	0.164	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	9619645	3L_9619645_SNP [dm3] 3L_9626545_SNP [dm6]	C	G	1.415e^-5	0.166	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_inv
2R	5738442	2R_5738442_SNP [dm3] 2R_9850937_SNP [dm6]	A	G	1.514e^-5	0.176	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
3L	7981269	3L_7981269_SNP [dm3] 3L_7988169_SNP [dm6]	C	T	1.532e^-5	0.177	INTRON nmo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	13184459	2R_13184459_SNP [dm3] 2R_17296954_SNP [dm6]	G	C	1.569e^-5	0.181	INTRON mbl
3R	26099242	3R_26099242_SNP [dm3] 3R_30273520_SNP [dm6]	A	T	1.702e^-5	0.195	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	13184445	2R_13184445_SNP [dm3] 2R_17296940_SNP [dm6]	T	G	1.770e^-5	0.201	INTRON mbl
2R	5731874	2R_5731874_SNP [dm3] 2R_9844369_SNP [dm6]	C	A	1.821e^-5	0.206	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	21429529	3R_21429529_SNP [dm3] 3R_25603807_SNP [dm6]	A	C	1.854e^-5	0.208	UTR_3_PRIME msi INTRON ymp
3L	2260373	3L_2260373_SNP [dm3] 3L_2260373_SNP [dm6]	G	A	1.899e^-5	0.212	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10233053	3L_10233053_SNP [dm3] 3L_10239953_SNP [dm6]	C	T	1.987e^-5	0.221	UPSTREAM CR45403 INTERGENIC
2R	8468002	2R_8468002_SNP [dm3] 2R_12580497_SNP [dm6]	A	T	2.050e^-5	0.226	SYNONYMOUS_CODING Sin3A
3R	16763338	3R_16763338_SNP [dm3] 3R_20937616_SNP [dm6]	T	C	2.147e^-5	0.235	INTRON CG31191
3L	4806552	3L_4806552_SNP [dm3] 3L_4806552_SNP [dm6]	A	G	2.225e^-5	0.243	SYNONYMOUS_CODING CG18808 DOWNSTREAM Dhc64C	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	10763537	3R_10763537_SNP [dm3] 3R_14937815_SNP [dm6]	A	T	2.241e^-5	0.243	INTERGENIC
2R	5763531	2R_5763531_SNP [dm3] 2R_9876026_SNP [dm6]	C	T	2.265e^-5	0.244	SYNONYMOUS_CODING CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9577924	3L_9577924_SNP [dm3] 3L_9584824_SNP [dm6]	T	C	2.305e^-5	0.247	INTRON CG42673
X	10287826	X_10287826_SNP [dm3] X_10393793_SNP [dm6]	C	T	2.333e^-5	0.247	INTRON flw
3L	13422674	3L_13422674_SNP [dm3] 3L_13429574_SNP [dm6]	C	T	2.345e^-5	0.247	NON_SYNONYMOUS_CODING CG10713	TF binding site mE1_TFBS_chinmo
3L	7981174	3L_7981174_SNP [dm3] 3L_7988074_SNP [dm6]	T	G	2.348e^-5	0.247	INTRON nmo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	18016249	3L_18016249_SNP [dm3] 3L_18023149_SNP [dm6]	A	T	2.373e^-5	0.247	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8530717	2L_8530717_SNP [dm3] 2L_8530717_SNP [dm6]	A	T	2.377e^-5	0.247	INTRON CG17834
2R	5707119	2R_5707119_SNP [dm3] 2R_9819614_SNP [dm6]	C	T	2.386e^-5	0.247	UPSTREAM CG34033 INTRON CG1648	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8510259	2L_8510259_SNP [dm3] 2L_8510259_SNP [dm6]	A	T	2.492e^-5	0.257	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16763353	3R_16763353_SNP [dm3] 3R_20937631_SNP [dm6]	T	C	2.522e^-5	0.258	INTRON CG31191
3R	23268228	3R_23268228_SNP [dm3] 3R_27442506_SNP [dm6]	G	A	2.623e^-5	0.267	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	9041241	X_9041241_SNP [dm3] X_9147208_SNP [dm6]	G	C	2.642e^-5	0.268	NON_SYNONYMOUS_CODING CG7065 DOWNSTREAM fh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22266786	X_22266786_DEL [dm3] X_22864950_DEL [dm6]	AT	C	2.718e^-5	0.274	INTRON CG42346
2L	8510361	2L_8510361_SNP [dm3] 2L_8510361_SNP [dm6]	C	A	2.746e^-5	0.275	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13852538	2R_13852538_SNP [dm3] 2R_17965033_SNP [dm6]	G	C	2.802e^-5	0.279	INTERGENIC
2R	14088600	2R_14088600_SNP [dm3] 2R_18201095_SNP [dm6]	G	T	2.811e^-5	0.279	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8526541	2L_8526541_SNP [dm3] 2L_8526541_SNP [dm6]	T	C	2.822e^-5	0.279	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others	TF binding site mE1_TFBS_cad
2L	10704121	2L_10704121_SNP [dm3] 2L_10704121_SNP [dm6]	A	T	2.890e^-5	0.284	INTRON Lip2 & 1 other
3L	18016968	3L_18016968_SNP [dm3] 3L_18023868_SNP [dm6]	G	T	3.109e^-5	0.304	INTRON Eip75B	TF binding site mE1_TFBS_Trl
2R	5735754	2R_5735754_SNP [dm3] 2R_9848249_SNP [dm6]	C	T	3.278e^-5	0.319	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	8386486	3L_8386486_SNP [dm3] 3L_8393386_SNP [dm6]	G	C	3.319e^-5	0.32	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	11794213	2R_11794213_SNP [dm3] 2R_15906708_SNP [dm6]	T	C	3.332e^-5	0.32	INTRON sli
3R	16763317	3R_16763317_SNP [dm3] 3R_20937595_SNP [dm6]	G	A	3.365e^-5	0.32	INTRON CG31191
2L	1228294	2L_1228294_SNP [dm3] 2L_1228294_SNP [dm6]	C	A	3.378e^-5	0.32	SYNONYMOUS_CODING CG42329
2L	8531671	2L_8531671_SNP [dm3] 2L_8531671_SNP [dm6]	A	T	3.383e^-5	0.32	INTRON CG17834
2L	4931812	2L_4931812_SNP [dm3] 2L_4931812_SNP [dm6]	T	C	3.402e^-5	0.32	INTRON hoe1
2R	5714577	2R_5714577_INS [dm3] 2R_9827072_INS [dm6]	G	GTA	3.410e^-5	0.32	FRAME_SHIFT dila INTRON dila	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12630657	3R_12630657_SNP [dm3] 3R_16804935_SNP [dm6]	C	T	3.455e^-5	0.322	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4622875	2L_4622875_SNP [dm3] 2L_4622875_SNP [dm6]	C	T	3.467e^-5	0.322	INTERGENIC
2R	11795618	2R_11795618_SNP [dm3] 2R_15908113_SNP [dm6]	C	G	3.544e^-5	0.327	INTRON sli
2R	5762331	2R_5762331_SNP [dm3] 2R_9874826_SNP [dm6]	C	G	3.556e^-5	0.327	UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10910706	2L_10910706_SNP [dm3] 2L_10910706_SNP [dm6]	C	T	3.589e^-5	0.328	UPSTREAM CG14069 INTERGENIC
3L	18021996	3L_18021996_DEL [dm3] 3L_18028896_DEL [dm6]	CC	C	3.649e^-5	0.331	INTRON Eip75B	TF binding site mE1_TFBS_HSA
2R	5762328	2R_5762328_SNP [dm3] 2R_9874823_SNP [dm6]	A	G	3.653e^-5	0.331	SPLICE_SITE_REGION cbx UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18261619	2R_18261619_SNP [dm3] 2R_22374114_SNP [dm6]	T	A	3.737e^-5	0.337	UPSTREAM Rtf1 INTRON CR44759	TF binding site BDTNP1_TFBS_dl
2L	12257020	2L_12257020_SNP [dm3] 2L_12257020_SNP [dm6]	A	G	3.779e^-5	0.339	INTRON aret
2L	8530438	2L_8530438_SNP [dm3] 2L_8530438_SNP [dm6]	T	A	3.804e^-5	0.339	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	18020323	3L_18020323_SNP [dm3] 3L_18027223_SNP [dm6]	A	T	3.835e^-5	0.339	INTRON Eip75B
3L	18026528	3L_18026528_SNP [dm3] 3L_18033428_SNP [dm6]	A	T	3.835e^-5	0.339	INTRON Eip75B
2R	5710601	2R_5710601_SNP [dm3] 2R_9823096_SNP [dm6]	T	A	3.873e^-5	0.34	UTR_3_PRIME dila UPSTREAM CG30001	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_ttk
3L	2679592	3L_2679592_SNP [dm3] 3L_2679592_SNP [dm6]	A	T	3.874e^-5	0.34	INTRON Fife	TF binding site mE1_TFBS_chinmo
2L	1228551	2L_1228551_SNP [dm3] 2L_1228551_SNP [dm6]	C	A	3.933e^-5	0.342	SYNONYMOUS_CODING CG42329
3L	18012896	3L_18012896_SNP [dm3] 3L_18019796_SNP [dm6]	T	A	3.937e^-5	0.342	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8522155	2L_8522155_SNP [dm3] 2L_8522155_SNP [dm6]	A	C	3.954e^-5	0.342	UTR_5_PRIME Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	5715307	2R_5715307_SNP [dm3] 2R_9827802_SNP [dm6]	A	G	3.992e^-5	0.344	UPSTREAM dila DOWNSTREAM hebe INTERGENIC	regulatory region REDfly_CRMs
X	8468686	X_8468686_SNP [dm3] X_8574653_SNP [dm6]	T	A	4.068e^-5	0.346	INTRON CG12065	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	13681294	2R_13681294_SNP [dm3] 2R_17793789_SNP [dm6]	T	C	4.072e^-5	0.346	UTR_5_PRIME Dhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3778614	2R_3778614_SNP [dm3] 2R_7891109_SNP [dm6]	C	A	4.074e^-5	0.346	INTRON CG30377
3L	18026147	3L_18026147_SNP [dm3] 3L_18033047_SNP [dm6]	T	A	4.122e^-5	0.347	INTRON Eip75B
2L	8533459	2L_8533459_SNP [dm3] 2L_8533459_SNP [dm6]	A	G	4.135e^-5	0.347	INTRON CG17834	TF binding site mE1_TFBS_cad
2R	15365812	2R_15365812_SNP [dm3] 2R_19478307_SNP [dm6]	T	C	4.145e^-5	0.347	INTRON par-1
2L	5382237	2L_5382237_SNP [dm3] 2L_5382237_SNP [dm6]	T	C	4.166e^-5	0.347	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9621428	3L_9621428_SNP [dm3] 3L_9628328_SNP [dm6]	G	T	4.216e^-5	0.35	SYNONYMOUS_CODING Or67b UPSTREAM CG8336
3R	23268180	3R_23268180_SNP [dm3] 3R_27442458_SNP [dm6]	T	A	4.249e^-5	0.35	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	18073712	3L_18073712_SNP [dm3] 3L_18080612_SNP [dm6]	T	C	4.260e^-5	0.35	DOWNSTREAM CR43253 INTERGENIC
3L	9621771	3L_9621771_SNP [dm3] 3L_9628671_SNP [dm6]	G	A	4.284e^-5	0.35	UPSTREAM CG8336 INTRON Or67b
2L	12257019	2L_12257019_SNP [dm3] 2L_12257019_SNP [dm6]	A	G	4.308e^-5	0.35	INTRON aret
3L	18013677	3L_18013677_SNP [dm3] 3L_18020577_SNP [dm6]	A	G	4.338e^-5	0.35	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2L	12573175	2L_12573175_SNP [dm3] 2L_12573175_SNP [dm6]	A	G	4.360e^-5	0.35	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11795809	2R_11795809_SNP [dm3] 2R_15908304_SNP [dm6]	C	T	4.367e^-5	0.35	INTRON sli	TF binding site mE1_TFBS_chinmo
3L	9620372	3L_9620372_SNP [dm3] 3L_9627272_SNP [dm6]	A	T	4.367e^-5	0.35	UTR_3_PRIME CG3335 DOWNSTREAM Or67b
3L	18025519	3L_18025519_SNP [dm3] 3L_18032419_SNP [dm6]	A	T	4.441e^-5	0.353	INTRON Eip75B
2R	5738140	2R_5738140_SNP [dm3] 2R_9850635_SNP [dm6]	C	A	4.453e^-5	0.353	UTR_3_PRIME CG1671 DOWNSTREAM CG1516
2R	5771199	2R_5771199_SNP [dm3] 2R_9883694_SNP [dm6]	C	T	4.459e^-5	0.353	UTR_3_PRIME CG1513
2L	2612212	2L_2612212_SNP [dm3] 2L_2612212_SNP [dm6]	A	T	4.526e^-5	0.357	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5738550	2R_5738550_SNP [dm3] 2R_9851045_SNP [dm6]	G	A	4.586e^-5	0.36	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
2R	15827354	2R_15827354_SNP [dm3] 2R_19939849_SNP [dm6]	C	T	4.623e^-5	0.36	DOWNSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	8419426	3R_8419426_SNP [dm3] 3R_12593704_SNP [dm6]	T	A	4.630e^-5	0.36	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2L	1627206	2L_1627206_SNP [dm3] 2L_1627206_SNP [dm6]	T	C	4.663e^-5	0.361	INTERGENIC
3L	8633033	3L_8633033_SNP [dm3] 3L_8639933_SNP [dm6]	G	A	4.717e^-5	0.364	UPSTREAM Cpr66D INTERGENIC
2L	8508773	2L_8508773_SNP [dm3] 2L_8508773_SNP [dm6]	G	A	4.814e^-5	0.37	DOWNSTREAM CG13096 INTERGENIC
3L	4476486	3L_4476486_SNP [dm3] 3L_4476486_SNP [dm6]	A	T	4.876e^-5	0.373	INTERGENIC
2R	3525765	2R_3525765_SNP [dm3] 2R_7638260_SNP [dm6]	C	A	4.931e^-5	0.376	UTR_5_PRIME CG43340 UPSTREAM CG43340 INTRON CG43340
2L	5550214	2L_5550214_SNP [dm3] 2L_5550214_SNP [dm6]	G	A	4.984e^-5	0.378	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2260288	3L_2260288_SNP [dm3] 3L_2260288_SNP [dm6]	G	A	5.003e^-5	0.378	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8531546	2L_8531546_SNP [dm3] 2L_8531546_SNP [dm6]	G	A	5.037e^-5	0.379	INTRON CG17834
2R	19398584	2R_19398584_SNP [dm3] 2R_23511061_SNP [dm6]	A	G	5.119e^-5	0.383	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
2R	8701364	2R_8701364_SNP [dm3] 2R_12813859_SNP [dm6]	A	G	5.149e^-5	0.383	INTERGENIC
2R	5785899	2R_5785899_SNP [dm3] 2R_9898394_SNP [dm6]	A	C	5.193e^-5	0.383	NON_SYNONYMOUS_CODING CG30007 DOWNSTREAM CG1441 & 1 other
3R	26099100	3R_26099100_SNP [dm3] 3R_30273378_SNP [dm6]	G	A	5.199e^-5	0.383	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9619729	3L_9619729_SNP [dm3] 3L_9626629_SNP [dm6]	C	T	5.201e^-5	0.383	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_inv
2R	18440625	2R_18440625_SNP [dm3] 2R_22553120_SNP [dm6]	G	A	5.207e^-5	0.383	INTRON px
2R	4387468	2R_4387468_SNP [dm3] 2R_8499963_SNP [dm6]	G	C	5.282e^-5	0.386	INTRON mtt
3L	18012154	3L_18012154_SNP [dm3] 3L_18019054_SNP [dm6]	A	C	5.290e^-5	0.386	INTRON Eip75B	TF binding site mE1_TFBS_HSA
X	22266867	X_22266867_INS [dm3] X_22865031_INS [dm6]	G	TC	5.312e^-5	0.386	INTRON CG42346
2L	3991884	2L_3991884_SNP [dm3] 2L_3991884_SNP [dm6]	C	A	5.362e^-5	0.388	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_Trl
2R	13851823	2R_13851823_SNP [dm3] 2R_17964318_SNP [dm6]	A	C	5.398e^-5	0.389	INTERGENIC
2L	8702537	2L_8702537_SNP [dm3] 2L_8702537_SNP [dm6]	A	C	5.441e^-5	0.391	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	726113	2L_726113_SNP [dm3] 2L_726113_SNP [dm6]	C	T	5.499e^-5	0.394	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18013653	3L_18013653_SNP [dm3] 3L_18020553_SNP [dm6]	C	A	5.644e^-5	0.398	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2R	7666707	2R_7666707_INS [dm3] 2R_11779202_INS [dm6]	T	TT	5.653e^-5	0.398	UTR_3_PRIME CG42493 INTRON ths
2L	2015492	2L_2015492_SNP [dm3] 2L_2015492_SNP [dm6]	A	T	5.657e^-5	0.398	INTRON CG4238	TF binding site BDTNP1_TFBS_dl
2R	8351152	2R_8351152_SNP [dm3] 2R_12463647_SNP [dm6]	C	G	5.663e^-5	0.398	INTRON Lac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	21062308	X_21062308_SNP [dm3] X_21191281_SNP [dm6]	G	T	5.666e^-5	0.398	INTERGENIC	transposable element FlyBase
2L	8539516	2L_8539516_SNP [dm3] 2L_8539516_SNP [dm6]	C	T	5.732e^-5	0.398	INTRON CG17834
3R	12204990	3R_12204990_SNP [dm3] 3R_16379268_SNP [dm6]	C	T	5.745e^-5	0.398	INTRON ss
3L	14160357	3L_14160357_SNP [dm3] 3L_14167257_SNP [dm6]	T	C	5.747e^-5	0.398	INTERGENIC	regulatory region REDfly_CRMs
2L	8510267	2L_8510267_SNP [dm3] 2L_8510267_SNP [dm6]	C	T	5.756e^-5	0.398	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17335909	X_17335909_SNP [dm3] X_17441876_SNP [dm6]	T	C	5.845e^-5	0.403	INTRON CG12994
3L	12918742	3L_12918742_SNP [dm3] 3L_12925642_SNP [dm6]	A	G	5.900e^-5	0.405	INTERGENIC
X	21900205	X_21900205_SNP [dm3] X_22498369_SNP [dm6]	T	C	5.969e^-5	0.408	SYNONYMOUS_CODING l_1_G0196	TF binding site mE1_TFBS_sens
2L	1218425	2L_1218425_SNP [dm3] 2L_1218425_SNP [dm6]	T	A	5.979e^-5	0.408	UPSTREAM CR43263 & 1 other INTERGENIC
2R	5708569	2R_5708569_SNP [dm3] 2R_9821064_SNP [dm6]	T	A	5.998e^-5	0.408	SYNONYMOUS_CODING CG34033 DOWNSTREAM CG30001
3R	7437891	3R_7437891_SNP [dm3] 3R_11612169_SNP [dm6]	G	T	6.078e^-5	0.412	INTRON Jupiter
2R	11750962	2R_11750962_SNP [dm3] 2R_15863457_SNP [dm6]	T	C	6.144e^-5	0.413	UPSTREAM Gpo-1 DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4530115	2R_4530115_SNP [dm3] 2R_8642610_SNP [dm6]	C	A	6.145e^-5	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	22266671	X_22266671_SNP [dm3] X_22864835_SNP [dm6]	C	A	6.181e^-5	0.414	INTRON CG42346
3L	18021584	3L_18021584_SNP [dm3] 3L_18028484_SNP [dm6]	T	A	6.234e^-5	0.416	INTRON Eip75B
2L	8508793	2L_8508793_SNP [dm3] 2L_8508793_SNP [dm6]	C	T	6.276e^-5	0.417	DOWNSTREAM CG13096 INTERGENIC
X	6902425	X_6902425_SNP [dm3] X_7008392_SNP [dm6]	T	A	6.287e^-5	0.417	DOWNSTREAM cm INTRON Inx7	TF binding site BDTNP1_TFBS_dl
3L	14350661	3L_14350661_SNP [dm3] 3L_14357561_SNP [dm6]	C	T	6.310e^-5	0.417	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	12729177	3R_12729177_SNP [dm3] 3R_16903455_SNP [dm6]	A	G	6.423e^-5	0.422	INTRON iab-8
3L	9620788	3L_9620788_SNP [dm3] 3L_9627688_SNP [dm6]	C	A	6.442e^-5	0.422	UPSTREAM CG8336 DOWNSTREAM CG3335 INTRON Or67b
3R	18691782	3R_18691782_SNP [dm3] 3R_22866060_SNP [dm6]	G	T	6.450e^-5	0.422	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11795550	2R_11795550_SNP [dm3] 2R_15908045_SNP [dm6]	G	A	6.496e^-5	0.423	INTRON sli
3L	11031363	3L_11031363_SNP [dm3] 3L_11038263_SNP [dm6]	C	T	6.519e^-5	0.423	SYNONYMOUS_CODING CG43693
3L	14189504	3L_14189504_SNP [dm3] 3L_14196404_SNP [dm6]	A	T	6.571e^-5	0.423	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10704390	2L_10704390_SNP [dm3] 2L_10704390_SNP [dm6]	C	A	6.573e^-5	0.423	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo
3L	14189503	3L_14189503_SNP [dm3] 3L_14196403_SNP [dm6]	G	A	6.585e^-5	0.423	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1626814	2L_1626814_SNP [dm3] 2L_1626814_SNP [dm6]	A	T	6.615e^-5	0.423	UPSTREAM CR44603 INTERGENIC
2L	8510360	2L_8510360_SNP [dm3] 2L_8510360_SNP [dm6]	T	A	6.645e^-5	0.424	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11254279	2R_11254279_SNP [dm3] 2R_15366774_SNP [dm6]	A	C	6.816e^-5	0.433	SYNONYMOUS_CODING unc-5	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8684042	3L_8684042_SNP [dm3] 3L_8690942_SNP [dm6]	T	C	6.871e^-5	0.435	INTERGENIC
3R	23979214	3R_23979214_SNP [dm3] 3R_28153492_SNP [dm6]	C	T	6.986e^-5	0.439	INTRON CG34354
2R	10466176	2R_10466176_SNP [dm3] 2R_14578671_SNP [dm6]	T	C	7.003e^-5	0.439	INTRON ttv
3R	4418223	3R_4418223_SNP [dm3] 3R_8592501_SNP [dm6]	C	T	7.016e^-5	0.439	INTRON 5-HT2B
2L	4622984	2L_4622984_SNP [dm3] 2L_4622984_SNP [dm6]	C	T	7.023e^-5	0.439	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1625979	2L_1625979_SNP [dm3] 2L_1625979_SNP [dm6]	G	C	7.107e^-5	0.441	EXON CR44603
2L	8510271	2L_8510271_SNP [dm3] 2L_8510271_SNP [dm6]	A	G	7.111e^-5	0.441	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4805959	3L_4805959_SNP [dm3] 3L_4805959_SNP [dm6]	G	A	7.128e^-5	0.441	UPSTREAM CG7509 DOWNSTREAM CG18808 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	24801398	3R_24801398_SNP [dm3] 3R_28975676_SNP [dm6]	C	T	7.154e^-5	0.441	INTERGENIC
2L	1933161	2L_1933161_SNP [dm3] 2L_1933161_SNP [dm6]	C	T	7.176e^-5	0.441	INTRON CG7337
3L	2141763	3L_2141763_SNP [dm3] 3L_2141763_SNP [dm6]	G	T	7.227e^-5	0.442	INTRON zormin	TF binding site mE1_TFBS_inv
2L	8510192	2L_8510192_DEL [dm3] 2L_8510192_DEL [dm6]	AGGCAGTGGTATTGCAAATT...	A	7.251e^-5	0.442	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2141753	3L_2141753_SNP [dm3] 3L_2141753_SNP [dm6]	C	G	7.260e^-5	0.442	INTRON zormin	TF binding site mE1_TFBS_inv
3R	16572321	3R_16572321_SNP [dm3] 3R_20746599_SNP [dm6]	G	A	7.279e^-5	0.442	INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8688036	2R_8688036_SNP [dm3] 2R_12800531_SNP [dm6]	G	A	7.360e^-5	0.445	SYNONYMOUS_CODING sca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17990417	3L_17990417_SNP [dm3] 3L_17997317_SNP [dm6]	C	A	7.427e^-5	0.448	INTRON Eip75B
X	4860923	X_4860923_INS [dm3] X_4966890_INS [dm6]	A	AA	7.492e^-5	0.45	INTRON CR44833	regulatory region REDfly_CRMs
2L	2039417	2L_2039417_SNP [dm3] 2L_2039417_SNP [dm6]	T	G	7.540e^-5	0.451	UPSTREAM Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_dl
X	18531638	X_18531638_SNP [dm3] X_18637605_SNP [dm6]	T	A	7.551e^-5	0.451	INTRON Rip11	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2892836	2L_2892836_SNP [dm3] 2L_2892836_SNP [dm6]	G	A	7.570e^-5	0.451	INTRON lilli	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11031378	3L_11031378_SNP [dm3] 3L_11038278_SNP [dm6]	C	T	7.604e^-5	0.451	SYNONYMOUS_CODING CG43693
3R	22431654	3R_22431654_SNP [dm3] 3R_26605932_SNP [dm6]	A	C	7.642e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10763720	3R_10763720_SNP [dm3] 3R_14937998_SNP [dm6]	A	T	7.686e^-5	0.453	INTERGENIC
2L	3298577	2L_3298577_SNP [dm3] 2L_3298577_SNP [dm6]	T	G	7.720e^-5	0.454	INTRON CG9663	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6230924	2L_6230924_SNP [dm3] 2L_6230924_SNP [dm6]	C	A	7.864e^-5	0.46	UPSTREAM CR44823 INTERGENIC
2L	6230925	2L_6230925_SNP [dm3] 2L_6230925_SNP [dm6]	A	T	7.864e^-5	0.46	UPSTREAM CR44823 INTERGENIC
2L	2548902	2L_2548902_SNP [dm3] 2L_2548902_SNP [dm6]	T	C	7.983e^-5	0.464	INTERGENIC
2R	5777768	2R_5777768_DEL [dm3] 2R_9890263_DEL [dm6]	AGACCTTTAA	A	8.000e^-5	0.464	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
3L	8687554	3L_8687554_SNP [dm3] 3L_8694454_SNP [dm6]	T	C	8.019e^-5	0.464	INTERGENIC
3L	16337635	3L_16337635_SNP [dm3] 3L_16344535_SNP [dm6]	G	A	8.044e^-5	0.464	NON_SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad
3R	10763626	3R_10763626_SNP [dm3] 3R_14937904_SNP [dm6]	C	T	8.056e^-5	0.464	INTERGENIC
2R	11264245	2R_11264245_SNP [dm3] 2R_15376740_SNP [dm6]	T	A	8.160e^-5	0.468	UTR_3_PRIME dup UPSTREAM CR43186	TF binding site mE1_TFBS_cad
2L	8325468	2L_8325468_SNP [dm3] 2L_8325468_SNP [dm6]	C	A	8.214e^-5	0.468	UPSTREAM CG7781 INTERGENIC
3R	25547978	3R_25547978_SNP [dm3] 3R_29722256_SNP [dm6]	A	C	8.222e^-5	0.468	UTR_3_PRIME CG15506 UPSTREAM CG34296 & 1 other	TF binding site mE1_TFBS_chinmo
2L	6775806	2L_6775806_SNP [dm3] 2L_6775806_SNP [dm6]	C	T	8.240e^-5	0.468	SYNONYMOUS_CODING CG17378 INTRON CG17378	TF binding site mE1_TFBS_cad
2L	12257033	2L_12257033_SNP [dm3] 2L_12257033_SNP [dm6]	A	G	8.271e^-5	0.468	INTRON aret
3L	10832559	3L_10832559_SNP [dm3] 3L_10839459_SNP [dm6]	T	C	8.294e^-5	0.468	INTERGENIC
3L	18026338	3L_18026338_SNP [dm3] 3L_18033238_SNP [dm6]	G	A	8.312e^-5	0.468	INTRON Eip75B
3L	16350333	3L_16350333_SNP [dm3] 3L_16357233_SNP [dm6]	C	T	8.328e^-5	0.468	UPSTREAM CG45057 INTRON CG45057
3R	10763721	3R_10763721_SNP [dm3] 3R_14937999_SNP [dm6]	G	A	8.374e^-5	0.469	INTERGENIC
3L	8288353	3L_8288353_SNP [dm3] 3L_8295253_SNP [dm6]	T	A	8.452e^-5	0.471	UTR_5_PRIME CG7201
2R	5707155	2R_5707155_SNP [dm3] 2R_9819650_SNP [dm6]	G	C	8.456e^-5	0.471	UPSTREAM CG34033 INTRON CG1648	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9620022	3L_9620022_SNP [dm3] 3L_9626922_SNP [dm6]	C	A	8.513e^-5	0.472	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_inv
2L	1630207	2L_1630207_SNP [dm3] 2L_1630207_SNP [dm6]	C	G	8.664e^-5	0.477	INTERGENIC
2L	1630218	2L_1630218_SNP [dm3] 2L_1630218_SNP [dm6]	C	A	8.664e^-5	0.477	INTERGENIC
3L	8522162	3L_8522162_SNP [dm3] 3L_8529062_SNP [dm6]	A	G	8.678e^-5	0.477	INTRON foi
3R	7146731	3R_7146731_INS [dm3] 3R_11321009_INS [dm6]	A	AA	8.871e^-5	0.486	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	26390211	3R_26390211_SNP [dm3] 3R_30564489_SNP [dm6]	G	A	8.908e^-5	0.486	INTRON tmod	TF binding site BDTNP1_TFBS_dl
3R	22431663	3R_22431663_SNP [dm3] 3R_26605941_SNP [dm6]	A	T	8.913e^-5	0.486	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18026122	3L_18026122_SNP [dm3] 3L_18033022_SNP [dm6]	A	T	9.075e^-5	0.493	INTRON Eip75B
2R	13429971	2R_13429971_SNP [dm3] 2R_17542466_SNP [dm6]	G	T	9.161e^-5	0.497	SYNONYMOUS_CODING CG43370	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8531505	2L_8531505_SNP [dm3] 2L_8531505_SNP [dm6]	A	T	9.229e^-5	0.499	INTRON CG17834
3R	10901781	3R_10901781_SNP [dm3] 3R_15076059_SNP [dm6]	A	T	9.271e^-5	0.5	INTRON dpr9
X	22265065	X_22265065_SNP [dm3] X_22863229_SNP [dm6]	C	G	9.327e^-5	0.5	INTRON CG42346
2L	8545652	2L_8545652_SNP [dm3] 2L_8545652_SNP [dm6]	A	G	9.330e^-5	0.5	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_Kr
3R	25296079	3R_25296079_SNP [dm3] 3R_29470357_SNP [dm6]	A	C	9.356e^-5	0.5	INTRON Ptp99A
3L	1591294	3L_1591294_SNP [dm3] 3L_1591294_SNP [dm6]	T	C	9.416e^-5	0.501	INTRON CG13917
3R	6264862	3R_6264862_INS [dm3] 3R_10439140_INS [dm6]	C	CC	9.428e^-5	0.501	INTERGENIC
2R	13184183	2R_13184183_SNP [dm3] 2R_17296678_SNP [dm6]	A	G	9.449e^-5	0.501	INTRON mbl
2L	6986444	2L_6986444_SNP [dm3] 2L_6986444_SNP [dm6]	A	T	9.538e^-5	0.504	INTRON uif EXON CR44326
2L	725995	2L_725995_SNP [dm3] 2L_725995_SNP [dm6]	T	A	9.632e^-5	0.506	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11795468	2R_11795468_SNP [dm3] 2R_15907963_SNP [dm6]	C	A	9.672e^-5	0.506	INTRON sli
3R	25262183	3R_25262183_SNP [dm3] 3R_29436461_SNP [dm6]	C	A	9.677e^-5	0.506	INTRON Ptp99A
3L	1777833	3L_1777833_SNP [dm3] 3L_1777833_SNP [dm6]	C	A	9.687e^-5	0.506	SYNONYMOUS_CODING mRpL46 UPSTREAM CG2021 DOWNSTREAM CG12018 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	26390325	3R_26390325_SNP [dm3] 3R_30564603_SNP [dm6]	G	C	9.998e^-5	0.521	INTRON tmod
2L	8548039	2L_8548039_SNP [dm3] 2L_8548039_SNP [dm6]	A	C	1.003e^-4	0.521	INTRON Sema-1a
3L	15500048	3L_15500048_SNP [dm3] 3L_15506948_SNP [dm6]	A	G	1.017e^-4	0.526	INTRON CG7841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	22264819	X_22264819_SNP [dm3] X_22862983_SNP [dm6]	C	T	1.018e^-4	0.526	INTRON CG42346	TF binding site mE1_TFBS_HSA
3R	11991191	3R_11991191_SNP [dm3] 3R_16165469_SNP [dm6]	G	A	1.024e^-4	0.528	INTRON CG6006
3L	18021592	3L_18021592_SNP [dm3] 3L_18028492_SNP [dm6]	C	A	1.031e^-4	0.529	INTRON Eip75B
2L	1235884	2L_1235884_SNP [dm3] 2L_1235884_SNP [dm6]	A	T	1.032e^-4	0.529	INTERGENIC
3L	18021180	3L_18021180_SNP [dm3] 3L_18028080_SNP [dm6]	T	A	1.047e^-4	0.535	INTRON Eip75B
2R	5736846	2R_5736846_SNP [dm3] 2R_9849341_SNP [dm6]	T	C	1.051e^-4	0.535	SYNONYMOUS_CODING CG1671	TF binding site mE1_TFBS_sens
3L	12195874	3L_12195874_DEL [dm3] 3L_12202774_DEL [dm6]	AGCTA	A	1.055e^-4	0.535	INTRON Adk1
2L	8508376	2L_8508376_INS [dm3] 2L_8508376_INS [dm6]	G	GG	1.056e^-4	0.535	DOWNSTREAM CG13096 INTERGENIC
2R	9308579	2R_9308579_SNP [dm3] 2R_13421074_SNP [dm6]	C	T	1.060e^-4	0.535	SYNONYMOUS_CODING CG42321
X	22266798	X_22266798_DEL [dm3] X_22864962_DEL [dm6]	CT	C	1.061e^-4	0.535	INTRON CG42346
2R	18261102	2R_18261102_SNP [dm3] 2R_22373597_SNP [dm6]	A	T	1.064e^-4	0.535	UPSTREAM Liprin-gamma DOWNSTREAM CR44759 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	5741204	2R_5741204_SNP [dm3] 2R_9853699_SNP [dm6]	T	C	1.069e^-4	0.535	SYNONYMOUS_CODING CG1516 INTRON CG1516
X	5213595	X_5213595_SNP [dm3] X_5319562_SNP [dm6]	G	A	1.070e^-4	0.535	SYNONYMOUS_CODING Rnp4F DOWNSTREAM Sas10	TF binding site mE1_TFBS_chinmo
2R	5738221	2R_5738221_SNP [dm3] 2R_9850716_SNP [dm6]	T	A	1.076e^-4	0.537	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
3R	10763685	3R_10763685_DEL [dm3] 3R_14937963_DEL [dm6]	AT	A	1.083e^-4	0.539	INTERGENIC
3L	2037346	3L_2037346_SNP [dm3] 3L_2037346_SNP [dm6]	T	A	1.102e^-4	0.546	DOWNSTREAM CG42355 INTERGENIC
2L	1627280	2L_1627280_SNP [dm3] 2L_1627280_SNP [dm6]	T	C	1.104e^-4	0.546	INTERGENIC
3L	9161604	3L_9161604_SNP [dm3] 3L_9168504_SNP [dm6]	T	G	1.109e^-4	0.547	INTRON Rdl
3R	10901777	3R_10901777_SNP [dm3] 3R_15076055_SNP [dm6]	A	C	1.114e^-4	0.548	INTRON dpr9
2L	1228536	2L_1228536_SNP [dm3] 2L_1228536_SNP [dm6]	C	T	1.128e^-4	0.552	SYNONYMOUS_CODING CG42329
2L	725978	2L_725978_SNP [dm3] 2L_725978_SNP [dm6]	T	A	1.128e^-4	0.552	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	844012	2L_844012_SNP [dm3] 2L_844012_SNP [dm6]	A	G	1.130e^-4	0.552	INTRON drongo
2L	9098562	2L_9098562_SNP [dm3] 2L_9098562_SNP [dm6]	C	A	1.137e^-4	0.552	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
3R	20013894	3R_20013894_SNP [dm3] 3R_24188172_SNP [dm6]	T	C	1.138e^-4	0.552	SYNONYMOUS_CODING CG5515 DOWNSTREAM CHORD & 1 other	TF binding site mE1_TFBS_sens
3L	8683720	3L_8683720_SNP [dm3] 3L_8690620_SNP [dm6]	T	C	1.140e^-4	0.552	INTERGENIC
2L	13090763	2L_13090763_SNP [dm3] 2L_13090763_SNP [dm6]	C	T	1.144e^-4	0.553	DOWNSTREAM CR44197 INTERGENIC
2R	14095282	2R_14095282_SNP [dm3] 2R_18207777_SNP [dm6]	A	G	1.150e^-4	0.553	START_GAINED CG30114 UTR_5_PRIME CG30114
3L	11182162	3L_11182162_SNP [dm3] 3L_11189062_SNP [dm6]	G	A	1.151e^-4	0.553	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14372646	X_14372646_SNP [dm3] X_14478613_SNP [dm6]	T	G	1.153e^-4	0.553	INTRON CG9411
2L	12682317	2L_12682317_SNP [dm3] 2L_12682317_SNP [dm6]	G	A	1.165e^-4	0.557	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	8540420	2L_8540420_SNP [dm3] 2L_8540420_SNP [dm6]	A	G	1.177e^-4	0.56	INTRON CG17834
2L	8540407	2L_8540407_SNP [dm3] 2L_8540407_SNP [dm6]	T	A	1.177e^-4	0.56	INTRON CG17834
3L	18012906	3L_18012906_SNP [dm3] 3L_18019806_SNP [dm6]	C	G	1.181e^-4	0.561	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	5716533	2R_5716533_SNP [dm3] 2R_9829028_SNP [dm6]	C	G	1.192e^-4	0.561	NON_SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15365823	2R_15365823_INS [dm3] 2R_19478318_INS [dm6]	A	AA	1.194e^-4	0.561	INTRON par-1
X	21062249	X_21062249_SNP [dm3] X_21191222_SNP [dm6]	C	T	1.194e^-4	0.561	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5790017	2R_5790017_SNP [dm3] 2R_9902512_SNP [dm6]	A	T	1.194e^-4	0.561	INTRON CG1441	TF binding site mE1_TFBS_cad
X	10649830	X_10649830_SNP [dm3] X_10755797_SNP [dm6]	G	C	1.202e^-4	0.562	INTRON Rph
3R	26408405	3R_26408405_SNP [dm3] 3R_30582683_SNP [dm6]	G	A	1.205e^-4	0.562	SYNONYMOUS_CODING Rpt6R DOWNSTREAM CG9702	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8687994	2R_8687994_SNP [dm3] 2R_12800489_SNP [dm6]	G	A	1.206e^-4	0.562	SYNONYMOUS_CODING sca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8503788	2L_8503788_SNP [dm3] 2L_8503788_SNP [dm6]	A	G	1.211e^-4	0.562	INTRON Dh31
2L	8503798	2L_8503798_SNP [dm3] 2L_8503798_SNP [dm6]	A	G	1.211e^-4	0.562	INTRON Dh31
2L	4927105	2L_4927105_SNP [dm3] 2L_4927105_SNP [dm6]	C	T	1.215e^-4	0.563	INTRON hoe1
2R	5807645	2R_5807645_SNP [dm3] 2R_9920140_SNP [dm6]	G	A	1.224e^-4	0.565	INTRON Mef2
3R	10763771	3R_10763771_SNP [dm3] 3R_14938049_SNP [dm6]	C	T	1.232e^-4	0.565	INTERGENIC
3R	26389895	3R_26389895_SNP [dm3] 3R_30564173_SNP [dm6]	T	A	1.232e^-4	0.565	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	1324225	3L_1324225_SNP [dm3] 3L_1324225_SNP [dm6]	C	G	1.242e^-4	0.565	UPSTREAM Myo61F & 1 other INTRON Myo61F
3R	12630642	3R_12630642_SNP [dm3] 3R_16804920_SNP [dm6]	T	C	1.244e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11750944	2R_11750944_SNP [dm3] 2R_15863439_SNP [dm6]	T	C	1.253e^-4	0.565	UPSTREAM Gpo-1 DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22265098	X_22265098_SNP [dm3] X_22863262_SNP [dm6]	A	G	1.253e^-4	0.565	INTRON CG42346
3L	7604805	3L_7604805_SNP [dm3] 3L_7611705_SNP [dm6]	A	T	1.258e^-4	0.565	INTRON CG33275
3R	26389829	3R_26389829_SNP [dm3] 3R_30564107_SNP [dm6]	A	C	1.262e^-4	0.565	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
X	22265314	X_22265314_SNP [dm3] X_22863478_SNP [dm6]	A	T	1.264e^-4	0.565	INTRON CG42346
2L	985221	2L_985221_SNP [dm3] 2L_985221_SNP [dm6]	C	T	1.264e^-4	0.565	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14731745	3R_14731745_SNP [dm3] 3R_18906023_SNP [dm6]	A	C	1.265e^-4	0.565	UPSTREAM EndoA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20625577	3L_20625577_DEL [dm3] 3L_20632477_DEL [dm6]	TAACTTTTTATAAGAT...	T	1.265e^-4	0.565	UPSTREAM CR44681 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8688000	2R_8688000_SNP [dm3] 2R_12800495_SNP [dm6]	C	T	1.273e^-4	0.565	SYNONYMOUS_CODING sca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9236860	X_9236860_SNP [dm3] X_9342827_SNP [dm6]	A	G	1.278e^-4	0.565	INTRON CG34449
2R	7799416	2R_7799416_SNP [dm3] 2R_11911911_SNP [dm6]	C	T	1.278e^-4	0.565	INTRON CG13183
2R	4182387	2R_4182387_SNP [dm3] 2R_8294882_SNP [dm6]	A	C	1.281e^-4	0.565	INTERGENIC
3R	10373067	3R_10373067_SNP [dm3] 3R_14547345_SNP [dm6]	C	T	1.304e^-4	0.565	INTRON Pde6
3L	8521839	3L_8521839_SNP [dm3] 3L_8528739_SNP [dm6]	G	T	1.305e^-4	0.565	UTR_5_PRIME foi INTRON foi
2L	10704847	2L_10704847_SNP [dm3] 2L_10704847_SNP [dm6]	G	A	1.305e^-4	0.565	SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5577269	2L_5577269_SNP [dm3] 2L_5577269_SNP [dm6]	T	A	1.306e^-4	0.565	INTERGENIC
2R	14185313	2R_14185313_SNP [dm3] 2R_18297808_SNP [dm6]	A	G	1.307e^-4	0.565	UTR_5_PRIME CG18539 UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb
3L	2728760	3L_2728760_SNP [dm3] 3L_2728760_SNP [dm6]	G	T	1.308e^-4	0.565	SYNONYMOUS_CODING Mrtf UTR_5_PRIME Mrtf	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4688180	3L_4688180_SNP [dm3] 3L_4688180_SNP [dm6]	G	T	1.315e^-4	0.565	SYNONYMOUS_CODING CG7514 UPSTREAM axo DOWNSTREAM CG18418	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5753386	2R_5753386_SNP [dm3] 2R_9865881_SNP [dm6]	T	G	1.317e^-4	0.565	NON_SYNONYMOUS_CODING Ntmt UPSTREAM cbx INTRON cbx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16337612	3L_16337612_SNP [dm3] 3L_16344512_SNP [dm6]	G	A	1.318e^-4	0.565	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad
2R	11976657	2R_11976657_SNP [dm3] 2R_16089152_SNP [dm6]	C	T	1.325e^-4	0.565	SYNONYMOUS_CODING Dg
3L	18024426	3L_18024426_SNP [dm3] 3L_18031326_SNP [dm6]	A	G	1.330e^-4	0.565	INTRON Eip75B
3L	16227720	3L_16227720_SNP [dm3] 3L_16234620_SNP [dm6]	A	C	1.332e^-4	0.565	UTR_5_PRIME l_3_72Dp DOWNSTREAM Hsc20	TF binding site mE1_TFBS_inv
2L	12460913	2L_12460913_SNP [dm3] 2L_12460913_SNP [dm6]	A	G	1.333e^-4	0.565	UTR_5_PRIME bun UPSTREAM mir-967 INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18821747	X_18821747_SNP [dm3] X_18927714_SNP [dm6]	A	C	1.333e^-4	0.565	INTERGENIC
3R	26408246	3R_26408246_SNP [dm3] 3R_30582524_SNP [dm6]	T	C	1.333e^-4	0.565	SYNONYMOUS_CODING Rpt6R DOWNSTREAM CG9702	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14021464	2L_14021464_SNP [dm3] 2L_14021464_SNP [dm6]	T	C	1.334e^-4	0.565	DOWNSTREAM CR45352 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15461899	3R_15461899_SNP [dm3] 3R_19636177_SNP [dm6]	C	A	1.337e^-4	0.565	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
2R	5705059	2R_5705059_SNP [dm3] 2R_9817554_SNP [dm6]	C	T	1.342e^-4	0.565	DOWNSTREAM lectin-46Cb INTRON CG1648 & 1 other
3L	8880104	3L_8880104_SNP [dm3] 3L_8887004_SNP [dm6]	T	C	1.343e^-4	0.565	INTRON dally
X	4732525	X_4732525_SNP [dm3] X_4838492_SNP [dm6]	C	G	1.344e^-4	0.565	INTERGENIC
3L	19549065	3L_19549065_DEL [dm3] 3L_19555965_DEL [dm6]	TA	T	1.346e^-4	0.565	EXON CR44677	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	16917335	2R_16917335_SNP [dm3] 2R_21029830_SNP [dm6]	T	A	1.348e^-4	0.565	INTRON CR45148
2L	7171853	2L_7171853_SNP [dm3] 2L_7171853_SNP [dm6]	G	T	1.349e^-4	0.565	INTERGENIC
3R	10763717	3R_10763717_SNP [dm3] 3R_14937995_SNP [dm6]	C	T	1.350e^-4	0.565	INTERGENIC
3R	20563710	3R_20563710_SNP [dm3] 3R_24737988_SNP [dm6]	T	C	1.350e^-4	0.565	INTRON tok
3L	1198495	3L_1198495_DEL [dm3] 3L_1198495_DEL [dm6]	TC	T	1.352e^-4	0.565	INTRON Aplip1
2R	19469637	2R_19469637_SNP [dm3] 2R_23582114_SNP [dm6]	G	T	1.354e^-4	0.565	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	18566257	X_18566257_INS [dm3] X_18672224_INS [dm6]	T	TAAAAAACGTAT...	1.357e^-4	0.565	INTERGENIC
2R	6229861	2R_6229861_SNP [dm3] 2R_10342356_SNP [dm6]	A	T	1.359e^-4	0.565	INTRON CG42732
2L	8506084	2L_8506084_SNP [dm3] 2L_8506084_SNP [dm6]	A	T	1.371e^-4	0.569	INTRON Dh31
2L	8509953	2L_8509953_SNP [dm3] 2L_8509953_SNP [dm6]	G	A	1.378e^-4	0.57	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5715403	2R_5715403_SNP [dm3] 2R_9827898_SNP [dm6]	G	A	1.385e^-4	0.572	UPSTREAM dila DOWNSTREAM hebe INTERGENIC
3R	26408951	3R_26408951_SNP [dm3] 3R_30583229_SNP [dm6]	A	C	1.398e^-4	0.575	SYNONYMOUS_CODING Rpt6R DOWNSTREAM CG9717	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	15304190	3R_15304190_SNP [dm3] 3R_19478468_SNP [dm6]	G	A	1.399e^-4	0.575	SYNONYMOUS_CODING Dys
2R	3777346	2R_3777346_SNP [dm3] 2R_7889841_SNP [dm6]	C	T	1.406e^-4	0.575	UPSTREAM CG30377 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10763640	3R_10763640_DEL [dm3] 3R_14937918_DEL [dm6]	GCCATAAGCCTAATCACTTT...	G	1.407e^-4	0.575	INTERGENIC
2L	5378959	2L_5378959_SNP [dm3] 2L_5378959_SNP [dm6]	G	T	1.409e^-4	0.575	DOWNSTREAM CR42850 INTERGENIC
2L	13888286	2L_13888286_SNP [dm3] 2L_13888286_SNP [dm6]	T	A	1.410e^-4	0.575	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10704096	2L_10704096_SNP [dm3] 2L_10704096_SNP [dm6]	T	A	1.426e^-4	0.578	INTRON Lip2 & 1 other
2R	14509237	2R_14509237_SNP [dm3] 2R_18621732_SNP [dm6]	C	T	1.427e^-4	0.578	UTR_5_PRIME CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA
2R	5734792	2R_5734792_SNP [dm3] 2R_9847287_SNP [dm6]	G	A	1.437e^-4	0.578	SYNONYMOUS_CODING Prosalpha7 UPSTREAM Orc6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	26389923	3R_26389923_SNP [dm3] 3R_30564201_SNP [dm6]	C	G	1.438e^-4	0.578	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	726121	2L_726121_SNP [dm3] 2L_726121_SNP [dm6]	T	C	1.440e^-4	0.578	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8419502	3R_8419502_SNP [dm3] 3R_12593780_SNP [dm6]	A	G	1.444e^-4	0.578	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
3L	14781582	3L_14781582_SNP [dm3] 3L_14788482_SNP [dm6]	C	T	1.449e^-4	0.578	NON_SYNONYMOUS_CODING Tdrd3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	12204991	3R_12204991_SNP [dm3] 3R_16379269_SNP [dm6]	C	T	1.456e^-4	0.578	INTRON ss
3L	10413559	3L_10413559_SNP [dm3] 3L_10420459_SNP [dm6]	A	G	1.458e^-4	0.578	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5741458	2R_5741458_SNP [dm3] 2R_9853953_SNP [dm6]	G	A	1.464e^-4	0.578	INTRON CG1516
2R	18015363	2R_18015363_SNP [dm3] 2R_22127858_SNP [dm6]	T	A	1.467e^-4	0.578	NON_SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	10763676	3R_10763676_SNP [dm3] 3R_14937954_SNP [dm6]	A	G	1.474e^-4	0.578	INTERGENIC
3R	10763696	3R_10763696_SNP [dm3] 3R_14937974_SNP [dm6]	A	C	1.474e^-4	0.578	INTERGENIC
X	19289872	X_19289872_SNP [dm3] X_19395839_SNP [dm6]	A	T	1.476e^-4	0.578	INTRON kek5
X	19289883	X_19289883_SNP [dm3] X_19395850_SNP [dm6]	A	C	1.476e^-4	0.578	INTRON kek5
3R	10763631	3R_10763631_DEL [dm3] 3R_14937909_DEL [dm6]	TCC	T	1.479e^-4	0.578	INTERGENIC
2L	1228611	2L_1228611_SNP [dm3] 2L_1228611_SNP [dm6]	C	T	1.480e^-4	0.578	SYNONYMOUS_CODING CG42329
3R	6249274	3R_6249274_SNP [dm3] 3R_10423552_SNP [dm6]	T	C	1.483e^-4	0.578	INTERGENIC	TF binding site mE1_TFBS_cad
X	19289873	X_19289873_SNP [dm3] X_19395840_SNP [dm6]	T	A	1.488e^-4	0.578	INTRON kek5
3L	16924617	3L_16924617_SNP [dm3] 3L_16931517_SNP [dm6]	A	G	1.489e^-4	0.578	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
3R	19073587	3R_19073587_SNP [dm3] 3R_23247865_SNP [dm6]	C	T	1.497e^-4	0.578	INTRON CG4467
3R	23126086	3R_23126086_SNP [dm3] 3R_27300364_SNP [dm6]	C	G	1.497e^-4	0.578	INTRON CG3339
2L	10704163	2L_10704163_SNP [dm3] 2L_10704163_SNP [dm6]	C	A	1.498e^-4	0.578	SYNONYMOUS_CODING CG6415 INTRON Lip2
2R	14093005	2R_14093005_SNP [dm3] 2R_18205500_SNP [dm6]	A	G	1.499e^-4	0.578	INTERGENIC
2L	14187056	2L_14187056_SNP [dm3] 2L_14187056_SNP [dm6]	C	T	1.501e^-4	0.578	SYNONYMOUS_CODING Dyrk2	TF binding site mE1_TFBS_cad
2L	14187174	2L_14187174_SNP [dm3] 2L_14187174_SNP [dm6]	G	A	1.512e^-4	0.578	INTRON Dyrk2	TF binding site mE1_TFBS_cad
3R	22175188	3R_22175188_SNP [dm3] 3R_26349466_SNP [dm6]	T	C	1.512e^-4	0.578	INTRON CG33970
2R	14183526	2R_14183526_SNP [dm3] 2R_18296021_SNP [dm6]	C	T	1.515e^-4	0.578	DOWNSTREAM CG18536 INTRON sbb & 1 other
X	5694207	X_5694207_SNP [dm3] X_5800174_SNP [dm6]	T	G	1.517e^-4	0.578	INTERGENIC
3L	17981600	3L_17981600_SNP [dm3] 3L_17988500_SNP [dm6]	T	G	1.517e^-4	0.578	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	17981729	3L_17981729_SNP [dm3] 3L_17988629_SNP [dm6]	T	A	1.517e^-4	0.578	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	14372656	X_14372656_SNP [dm3] X_14478623_SNP [dm6]	A	C	1.519e^-4	0.578	INTRON CG9411
3R	24822865	3R_24822865_SNP [dm3] 3R_28997143_SNP [dm6]	G	T	1.519e^-4	0.578	INTRON wat	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	22265130	X_22265130_SNP [dm3] X_22863294_SNP [dm6]	C	A	1.537e^-4	0.578	INTRON CG42346
2L	3297684	2L_3297684_SNP [dm3] 2L_3297684_SNP [dm6]	T	C	1.540e^-4	0.578	INTRON CG9663
2L	12185727	2L_12185727_SNP [dm3] 2L_12185727_SNP [dm6]	T	A	1.542e^-4	0.578	INTRON aret	TF binding site BDTNP1_TFBS_dl
3L	17989561	3L_17989561_SNP [dm3] 3L_17996461_SNP [dm6]	C	G	1.551e^-4	0.578	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18013969	3L_18013969_SNP [dm3] 3L_18020869_SNP [dm6]	T	G	1.552e^-4	0.578	INTRON Eip75B	TF binding site mE1_TFBS_Trl
2L	10705681	2L_10705681_SNP [dm3] 2L_10705681_SNP [dm6]	G	C	1.553e^-4	0.578	DOWNSTREAM CG6415 INTRON Lip2
3L	9625468	3L_9625468_SNP [dm3] 3L_9632368_SNP [dm6]	T	C	1.553e^-4	0.578	NON_SYNONYMOUS_CODING fry DOWNSTREAM CG8336	TF binding site mE1_TFBS_cad
2L	5818395	2L_5818395_SNP [dm3] 2L_5818395_SNP [dm6]	T	C	1.555e^-4	0.578	UTR_5_PRIME CG31644
2R	7060426	2R_7060426_SNP [dm3] 2R_11172921_SNP [dm6]	T	C	1.562e^-4	0.578	UPSTREAM CG13229 & 1 other INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	11939115	2L_11939115_SNP [dm3] 2L_11939115_SNP [dm6]	T	C	1.563e^-4	0.578	SYNONYMOUS_CODING Or33c	TF binding site mE1_TFBS_cad
3R	6249305	3R_6249305_DEL [dm3] 3R_10423583_DEL [dm6]	CA	C	1.567e^-4	0.578	INTERGENIC	TF binding site mE1_TFBS_cad
2R	5704545	2R_5704545_SNP [dm3] 2R_9817040_SNP [dm6]	G	T	1.569e^-4	0.578	UPSTREAM lectin-46Ca DOWNSTREAM lectin-46Cb INTRON CG1648
2L	12366860	2L_12366860_SNP [dm3] 2L_12366860_SNP [dm6]	A	T	1.569e^-4	0.578	INTRON bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24582303	3R_24582303_SNP [dm3] 3R_28756581_SNP [dm6]	G	A	1.569e^-4	0.578	SYNONYMOUS_CODING CG9997 DOWNSTREAM aqrs	TF binding site BDTNP1_TFBS_bcd
2L	8325110	2L_8325110_SNP [dm3] 2L_8325110_SNP [dm6]	G	T	1.570e^-4	0.578	UTR_5_PRIME CG7781
3L	12641238	3L_12641238_SNP [dm3] 3L_12648138_SNP [dm6]	T	G	1.570e^-4	0.578	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17983920	3L_17983920_SNP [dm3] 3L_17990820_SNP [dm6]	A	T	1.573e^-4	0.578	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	9617962	3L_9617962_SNP [dm3] 3L_9624862_SNP [dm6]	C	T	1.581e^-4	0.58	SYNONYMOUS_CODING CG3335 DOWNSTREAM LanB2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7765430	3L_7765430_SNP [dm3] 3L_7772330_SNP [dm6]	G	A	1.584e^-4	0.58	INTRON Clk	regulatory region REDfly_CRMs TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	8423905	2L_8423905_SNP [dm3] 2L_8423905_SNP [dm6]	T	A	1.588e^-4	0.58	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2L	15565395	2L_15565395_SNP [dm3] 2L_15565395_SNP [dm6]	T	A	1.589e^-4	0.58	INTRON kek3
3R	12658659	3R_12658659_SNP [dm3] 3R_16832937_SNP [dm6]	C	T	1.592e^-4	0.58	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	19394055	2L_19394055_SNP [dm3] 2L_19394055_SNP [dm6]	T	G	1.603e^-4	0.58	UPSTREAM CG31798 & 1 other INTRON CG17544	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	10704601	2L_10704601_SNP [dm3] 2L_10704601_SNP [dm6]	C	T	1.606e^-4	0.58	SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo
2R	18262312	2R_18262312_SNP [dm3] 2R_22374807_SNP [dm6]	G	A	1.607e^-4	0.58	UPSTREAM Rtf1 EXON CR44759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7437895	3R_7437895_SNP [dm3] 3R_11612173_SNP [dm6]	A	G	1.608e^-4	0.58	INTRON Jupiter
3R	23126098	3R_23126098_SNP [dm3] 3R_27300376_SNP [dm6]	C	T	1.609e^-4	0.58	INTRON CG3339
2L	17068958	2L_17068958_SNP [dm3] 2L_17068958_SNP [dm6]	C	G	1.610e^-4	0.58	INTERGENIC
2R	20022867	2R_20022867_SNP [dm3] 2R_24135344_SNP [dm6]	T	C	1.616e^-4	0.581	SYNONYMOUS_CODING CG4065 UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8
3R	26389955	3R_26389955_SNP [dm3] 3R_30564233_SNP [dm6]	C	T	1.621e^-4	0.581	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	15461979	3R_15461979_MNP [dm3] 3R_19636257_MNP [dm6]	ACC	GTT	1.626e^-4	0.581	DOWNSTREAM CG34138 INTRON subdued
2L	8081635	2L_8081635_SNP [dm3] 2L_8081635_SNP [dm6]	T	C	1.627e^-4	0.581	INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19458042	3R_19458042_SNP [dm3] 3R_23632320_SNP [dm6]	C	T	1.629e^-4	0.581	INTRON CG31145	TF binding site mE1_TFBS_inv
2R	16917148	2R_16917148_SNP [dm3] 2R_21029643_SNP [dm6]	G	A	1.642e^-4	0.583	EXON CR45148
X	7941182	X_7941182_SNP [dm3] X_8047149_SNP [dm6]	T	A	1.644e^-4	0.583	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	14213579	3L_14213579_DEL [dm3] 3L_14220479_DEL [dm6]	TT	T	1.647e^-4	0.583	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	20625492	3L_20625492_SNP [dm3] 3L_20632392_SNP [dm6]	G	A	1.649e^-4	0.583	UPSTREAM CR44681 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1324224	3L_1324224_SNP [dm3] 3L_1324224_SNP [dm6]	T	C	1.652e^-4	0.583	UPSTREAM Myo61F & 1 other INTRON Myo61F
2R	20193571	2R_20193571_SNP [dm3] 2R_24306048_SNP [dm6]	T	G	1.653e^-4	0.583	UTR_5_PRIME betaTub60D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6077599	2R_6077599_SNP [dm3] 2R_10190094_SNP [dm6]	C	T	1.668e^-4	0.585	INTRON KCNQ
3R	19066690	3R_19066690_SNP [dm3] 3R_23240968_SNP [dm6]	G	A	1.670e^-4	0.585	UPSTREAM CG4467 INTRON CG4467
2L	3505683	2L_3505683_SNP [dm3] 2L_3505683_SNP [dm6]	T	A	1.674e^-4	0.585	INTRON tim	TF binding site BDTNP1_TFBS_twi
2L	6753685	2L_6753685_SNP [dm3] 2L_6753685_SNP [dm6]	A	T	1.676e^-4	0.585	INTRON CG11221
X	19006575	X_19006575_SNP [dm3] X_19112542_SNP [dm6]	G	T	1.680e^-4	0.585	INTERGENIC
3R	10763629	3R_10763629_SNP [dm3] 3R_14937907_SNP [dm6]	T	G	1.681e^-4	0.585	INTERGENIC
2L	8511481	2L_8511481_SNP [dm3] 2L_8511481_SNP [dm6]	C	G	1.684e^-4	0.585	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6778074	2L_6778074_SNP [dm3] 2L_6778074_SNP [dm6]	A	T	1.685e^-4	0.585	UTR_3_PRIME CG17378 DOWNSTREAM nrv1 & 1 other
2R	14286245	2R_14286245_SNP [dm3] 2R_18398740_SNP [dm6]	C	T	1.690e^-4	0.586	SYNONYMOUS_CODING GstE1 UPSTREAM GstE2 & 1 other
2R	5740777	2R_5740777_SNP [dm3] 2R_9853272_SNP [dm6]	G	C	1.695e^-4	0.586	INTRON CG1516
2R	5748761	2R_5748761_SNP [dm3] 2R_9861256_SNP [dm6]	G	A	1.702e^-4	0.587	UPSTREAM CG1516 INTRON CG1516 EXON CR44293	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	22266779	X_22266779_SNP [dm3] X_22864943_SNP [dm6]	A	C	1.703e^-4	0.587	INTRON CG42346
2R	5717075	2R_5717075_SNP [dm3] 2R_9829570_SNP [dm6]	G	A	1.708e^-4	0.588	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20393796	3R_20393796_SNP [dm3] 3R_24568074_SNP [dm6]	A	G	1.713e^-4	0.588	INTRON CG13624	TF binding site BDTNP1_TFBS_da
2L	5676774	2L_5676774_SNP [dm3] 2L_5676774_SNP [dm6]	G	A	1.722e^-4	0.59	INTERGENIC
3L	12630140	3L_12630140_INS [dm3] 3L_12637040_INS [dm6]	T	TTAGAT	1.728e^-4	0.591	INTRON CR32111
3R	23673628	3R_23673628_SNP [dm3] 3R_27847906_SNP [dm6]	C	T	1.729e^-4	0.591	DOWNSTREAM Or98a INTRON CG34353
3R	23257976	3R_23257976_SNP [dm3] 3R_27432254_SNP [dm6]	A	G	1.734e^-4	0.591	INTRON side
3L	561542	3L_561542_SNP [dm3] 3L_561542_SNP [dm6]	C	A	1.736e^-4	0.591	INTRON hipk	TF binding site BDTNP1_TFBS_twi
2R	5734463	2R_5734463_SNP [dm3] 2R_9846958_SNP [dm6]	G	T	1.748e^-4	0.591	UPSTREAM Orc6 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22895481	3R_22895481_INS [dm3] 3R_27069759_INS [dm6]	T	TGGCT	1.753e^-4	0.591	UTR_5_PRIME spz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8548199	3L_8548199_SNP [dm3] 3L_8555099_SNP [dm6]	A	T	1.756e^-4	0.591	INTRON rhea	TF binding site BDTNP1_TFBS_twi
3R	26745266	3R_26745266_SNP [dm3] 3R_30919544_SNP [dm6]	T	G	1.759e^-4	0.591	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	989061	2L_989061_SNP [dm3] 2L_989061_SNP [dm6]	T	C	1.759e^-4	0.591	EXON CR44801	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19006586	X_19006586_SNP [dm3] X_19112553_SNP [dm6]	C	T	1.761e^-4	0.591	INTERGENIC
2L	3210559	2L_3210559_SNP [dm3] 2L_3210559_SNP [dm6]	C	T	1.762e^-4	0.591	EXON CR45336
2L	8512163	2L_8512163_DEL [dm3] 2L_8512163_DEL [dm6]	AA	A	1.763e^-4	0.591	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3827304	X_3827304_SNP [dm3] X_3933271_SNP [dm6]	A	G	1.764e^-4	0.591	SYNONYMOUS_CODING CG2938	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13057951	2L_13057951_SNP [dm3] 2L_13057951_SNP [dm6]	A	G	1.775e^-4	0.593	INTRON CG9932
2R	20135625	2R_20135625_SNP [dm3] 2R_24248102_SNP [dm6]	G	A	1.781e^-4	0.594	DOWNSTREAM Ir60a INTRON nord
2R	6229818	2R_6229818_SNP [dm3] 2R_10342313_SNP [dm6]	T	A	1.783e^-4	0.594	INTRON CG42732
3R	26388569	3R_26388569_SNP [dm3] 3R_30562847_SNP [dm6]	T	A	1.786e^-4	0.594	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3920070	3L_3920070_SNP [dm3] 3L_3920070_SNP [dm6]	T	A	1.796e^-4	0.596	INTRON Eip63F-1
3L	2440260	3L_2440260_SNP [dm3] 3L_2440260_SNP [dm6]	T	C	1.803e^-4	0.597	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco
3L	14160402	3L_14160402_SNP [dm3] 3L_14167302_SNP [dm6]	T	A	1.807e^-4	0.597	INTERGENIC	regulatory region REDfly_CRMs
2R	1403693	2R_1403693_SNP [dm3] 2R_5516188_SNP [dm6]	C	A	1.813e^-4	0.597	INTRON CG30438
3R	26408921	3R_26408921_SNP [dm3] 3R_30583199_SNP [dm6]	T	C	1.813e^-4	0.597	SYNONYMOUS_CODING Rpt6R DOWNSTREAM CG9717	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	17879223	3L_17879223_SNP [dm3] 3L_17886123_SNP [dm6]	G	T	1.817e^-4	0.597	SYNONYMOUS_CODING CG16775 UPSTREAM CR42548	TF binding site mE1_TFBS_cad
2L	2043559	2L_2043559_SNP [dm3] 2L_2043559_SNP [dm6]	G	T	1.818e^-4	0.597	UTR_3_PRIME Su_dx_ DOWNSTREAM CR45298
3R	16588207	3R_16588207_SNP [dm3] 3R_20762485_SNP [dm6]	T	A	1.820e^-4	0.597	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16416355	3L_16416355_INS [dm3] 3L_16423255_INS [dm6]	A	AGGCTTATCGAAGCCATTTA...	1.826e^-4	0.598	UTR_3_PRIME dsx-c73A INTRON CG33158
3L	18025994	3L_18025994_SNP [dm3] 3L_18032894_SNP [dm6]	C	A	1.835e^-4	0.6	INTRON Eip75B
2L	8506335	2L_8506335_SNP [dm3] 2L_8506335_SNP [dm6]	G	A	1.853e^-4	0.605	INTRON Dh31
3R	10763794	3R_10763794_SNP [dm3] 3R_14938072_SNP [dm6]	C	G	1.866e^-4	0.606	INTERGENIC
2R	5716364	2R_5716364_SNP [dm3] 2R_9828859_SNP [dm6]	T	G	1.868e^-4	0.606	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15503656	3L_15503656_SNP [dm3] 3L_15510556_SNP [dm6]	T	C	1.869e^-4	0.606	UPSTREAM Eip71CD INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	10287135	X_10287135_SNP [dm3] X_10393102_SNP [dm6]	G	A	1.878e^-4	0.608	INTRON flw
3R	26409189	3R_26409189_SNP [dm3] 3R_30583467_SNP [dm6]	C	A	1.883e^-4	0.608	SYNONYMOUS_CODING Rpt6R DOWNSTREAM CG9717	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	1916275	3L_1916275_SNP [dm3] 3L_1916275_SNP [dm6]	G	A	1.884e^-4	0.608	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18051860	3L_18051860_SNP [dm3] 3L_18058760_SNP [dm6]	T	C	1.889e^-4	0.609	SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5708078	2R_5708078_SNP [dm3] 2R_9820573_SNP [dm6]	G	A	1.898e^-4	0.611	NON_SYNONYMOUS_CODING CG34033 UPSTREAM CG1648 DOWNSTREAM CG30001	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	23052589	3R_23052589_SNP [dm3] 3R_27226867_SNP [dm6]	G	T	1.908e^-4	0.611	DOWNSTREAM CG42813 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	3574110	2L_3574110_SNP [dm3] 2L_3574110_SNP [dm6]	A	G	1.908e^-4	0.611	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	15739421	2L_15739421_SNP [dm3] 2L_15739421_SNP [dm6]	C	G	1.909e^-4	0.611	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8880139	3L_8880139_DEL [dm3] 3L_8887039_DEL [dm6]	TC	A	1.911e^-4	0.611	INTRON dally
2R	5701241	2R_5701241_SNP [dm3] 2R_9813736_SNP [dm6]	C	T	1.920e^-4	0.612	UPSTREAM CG1648 INTRON CG1648
3R	20508781	3R_20508781_SNP [dm3] 3R_24683059_SNP [dm6]	A	C	1.921e^-4	0.612	INTRON slo
3L	8688718	3L_8688718_INS [dm3] 3L_8695618_INS [dm6]	C	CAC	1.930e^-4	0.612	INTERGENIC
3R	5702730	3R_5702730_SNP [dm3] 3R_9877008_SNP [dm6]	G	A	1.930e^-4	0.612	INTRON Glut4EF EXON CR45029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16388559	2R_16388559_SNP [dm3] 2R_20501054_SNP [dm6]	G	A	1.939e^-4	0.612	INTERGENIC	regulatory region REDfly_CRMs
3R	26408924	3R_26408924_SNP [dm3] 3R_30583202_SNP [dm6]	A	G	1.940e^-4	0.612	SYNONYMOUS_CODING Rpt6R DOWNSTREAM CG9717	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	20625096	3L_20625096_DEL [dm3] 3L_20631996_DEL [dm6]	TCGAAA	T	1.941e^-4	0.612	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	9886098	2L_9886098_SNP [dm3] 2L_9886098_SNP [dm6]	A	T	1.945e^-4	0.612	UTR_5_PRIME nAChRalpha6 UPSTREAM CR44701
2R	16313373	2R_16313373_SNP [dm3] 2R_20425868_SNP [dm6]	G	A	1.951e^-4	0.612	INTRON CG12484
2L	8807718	2L_8807718_SNP [dm3] 2L_8807718_SNP [dm6]	C	A	1.956e^-4	0.612	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
2L	3827724	2L_3827724_SNP [dm3] 2L_3827724_SNP [dm6]	T	A	1.959e^-4	0.612	DOWNSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1575452	2L_1575452_SNP [dm3] 2L_1575452_SNP [dm6]	A	G	1.960e^-4	0.612	INTRON haf
3R	25862628	3R_25862628_SNP [dm3] 3R_30036906_SNP [dm6]	T	C	1.964e^-4	0.612	UPSTREAM CG7928 DOWNSTREAM ocn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	19390834	2L_19390834_SNP [dm3] 2L_19390834_SNP [dm6]	C	A	1.971e^-4	0.612	SYNONYMOUS_CODING CG17544 UPSTREAM CG17549	TF binding site mE1_TFBS_chinmo
3R	22433750	3R_22433750_SNP [dm3] 3R_26608028_SNP [dm6]	T	C	1.972e^-4	0.612	EXON CR44951
2L	5394753	2L_5394753_SNP [dm3] 2L_5394753_SNP [dm6]	C	T	1.975e^-4	0.612	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	3922845	3L_3922845_SNP [dm3] 3L_3922845_SNP [dm6]	T	A	1.975e^-4	0.612	INTRON Eip63F-1
3L	20619788	3L_20619788_SNP [dm3] 3L_20626688_SNP [dm6]	C	G	1.977e^-4	0.612	EXON CR44683 & 1 other
3R	12480626	3R_12480626_SNP [dm3] 3R_16654904_SNP [dm6]	T	A	1.980e^-4	0.612	INTRON modSP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	21646854	3R_21646854_SNP [dm3] 3R_25821132_SNP [dm6]	C	A	1.982e^-4	0.612	INTERGENIC
2L	13839060	2L_13839060_SNP [dm3] 2L_13839060_SNP [dm6]	G	A	1.983e^-4	0.612	DOWNSTREAM CG33307 INTRON CenG1A
2R	2081794	2R_2081794_SNP [dm3] 2R_6194289_SNP [dm6]	G	A	1.990e^-4	0.613	INTRON Ptr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	1033736	2L_1033736_SNP [dm3] 2L_1033736_SNP [dm6]	G	A	1.993e^-4	0.613	SYNONYMOUS_CODING IA-2
3L	1260896	3L_1260896_SNP [dm3] 3L_1260896_SNP [dm6]	T	A	2.009e^-4	0.615	INTRON CG9134
2R	20210045	2R_20210045_SNP [dm3] 2R_24322522_SNP [dm6]	G	A	2.011e^-4	0.615	INTERGENIC
3R	22431693	3R_22431693_SNP [dm3] 3R_26605971_SNP [dm6]	A	G	2.018e^-4	0.615	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7442983	2L_7442983_SNP [dm3] 2L_7442983_SNP [dm6]	C	G	2.018e^-4	0.615	UPSTREAM CG5973 INTRON CG5973
2L	4610220	2L_4610220_SNP [dm3] 2L_4610220_SNP [dm6]	C	A	2.026e^-4	0.615	INTRON dp
3R	24167663	3R_24167663_SNP [dm3] 3R_28341941_SNP [dm6]	G	T	2.027e^-4	0.615	START_GAINED Moca-cyp UTR_5_PRIME Moca-cyp INTRON Moca-cyp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23277491	3R_23277491_SNP [dm3] 3R_27451769_SNP [dm6]	G	T	2.027e^-4	0.615	INTERGENIC
2L	8540445	2L_8540445_SNP [dm3] 2L_8540445_SNP [dm6]	C	A	2.028e^-4	0.615	INTRON CG17834
2R	11798822	2R_11798822_SNP [dm3] 2R_15911317_SNP [dm6]	C	T	2.030e^-4	0.615	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17333204	X_17333204_SNP [dm3] X_17439171_SNP [dm6]	T	C	2.034e^-4	0.615	INTRON CG12994
2L	12821201	2L_12821201_SNP [dm3] 2L_12821201_SNP [dm6]	A	G	2.039e^-4	0.615	SYNONYMOUS_CODING kek1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	7666696	2R_7666696_INS [dm3] 2R_11779191_INS [dm6]	A	ATGTA	2.041e^-4	0.615	UTR_3_PRIME CG42493 INTRON ths
2L	8541841	2L_8541841_SNP [dm3] 2L_8541841_SNP [dm6]	A	G	2.044e^-4	0.615	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4142355	3L_4142355_SNP [dm3] 3L_4142355_SNP [dm6]	T	A	2.049e^-4	0.615	UPSTREAM CG32260 DOWNSTREAM Ras64B & 1 other INTERGENIC
3L	9619814	3L_9619814_SNP [dm3] 3L_9626714_SNP [dm6]	C	G	2.051e^-4	0.615	DOWNSTREAM Or67b INTRON CG3335	TF binding site mE1_TFBS_inv
3L	7981169	3L_7981169_SNP [dm3] 3L_7988069_SNP [dm6]	T	C	2.054e^-4	0.615	INTRON nmo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	18026333	3L_18026333_SNP [dm3] 3L_18033233_SNP [dm6]	A	G	2.057e^-4	0.615	INTRON Eip75B
2L	1578529	2L_1578529_SNP [dm3] 2L_1578529_SNP [dm6]	A	G	2.060e^-4	0.615	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	11098603	X_11098603_SNP [dm3] X_11204570_SNP [dm6]	A	G	2.065e^-4	0.616	INTERGENIC
3R	24893549	3R_24893549_DEL [dm3] 3R_29067827_DEL [dm6]	TTAT	A	2.076e^-4	0.617	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8386441	3L_8386441_SNP [dm3] 3L_8393341_SNP [dm6]	G	A	2.088e^-4	0.617	SYNONYMOUS_CODING Jon66Cii DOWNSTREAM Jon66Ci	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	5867623	2R_5867623_SNP [dm3] 2R_9980118_SNP [dm6]	A	C	2.088e^-4	0.617	SYNONYMOUS_CODING eve UPSTREAM CR43948	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8885502	3L_8885502_SNP [dm3] 3L_8892402_SNP [dm6]	T	C	2.091e^-4	0.617	SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5381954	2L_5381954_SNP [dm3] 2L_5381954_SNP [dm6]	G	A	2.097e^-4	0.617	UPSTREAM CR42850 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3882538	3L_3882538_SNP [dm3] 3L_3882538_SNP [dm6]	T	A	2.097e^-4	0.617	INTERGENIC
2L	6695943	2L_6695943_SNP [dm3] 2L_6695943_SNP [dm6]	G	A	2.098e^-4	0.617	INTRON Tsp
2R	5871724	2R_5871724_SNP [dm3] 2R_9984219_SNP [dm6]	G	T	2.100e^-4	0.617	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17068073	2L_17068073_SNP [dm3] 2L_17068073_SNP [dm6]	A	G	2.109e^-4	0.617	INTERGENIC
3L	9577332	3L_9577332_SNP [dm3] 3L_9584232_SNP [dm6]	A	C	2.111e^-4	0.617	INTRON CG42673
3R	6669210	3R_6669210_SNP [dm3] 3R_10843488_SNP [dm6]	A	G	2.111e^-4	0.617	NON_SYNONYMOUS_CODING Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	2042021	2L_2042021_SNP [dm3] 2L_2042021_SNP [dm6]	C	A	2.120e^-4	0.617	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2043515	2L_2043515_SNP [dm3] 2L_2043515_SNP [dm6]	T	C	2.120e^-4	0.617	UTR_3_PRIME Su_dx_
2L	4927107	2L_4927107_SNP [dm3] 2L_4927107_SNP [dm6]	C	G	2.121e^-4	0.617	INTRON hoe1
2R	13184179	2R_13184179_SNP [dm3] 2R_17296674_SNP [dm6]	T	C	2.122e^-4	0.617	INTRON mbl
2R	14183979	2R_14183979_SNP [dm3] 2R_18296474_SNP [dm6]	G	C	2.124e^-4	0.617	SYNONYMOUS_CODING CG18537 UPSTREAM CG18538 DOWNSTREAM CG18536 INTRON sbb
2L	1228539	2L_1228539_SNP [dm3] 2L_1228539_SNP [dm6]	T	C	2.129e^-4	0.617	SYNONYMOUS_CODING CG42329
3R	26937375	3R_26937375_SNP [dm3] 3R_31111653_SNP [dm6]	T	A	2.129e^-4	0.617	INTERGENIC	TF binding site mE1_TFBS_inv
X	10649773	X_10649773_SNP [dm3] X_10755740_SNP [dm6]	C	T	2.133e^-4	0.617	INTRON Rph
3R	10801808	3R_10801808_SNP [dm3] 3R_14976086_SNP [dm6]	C	T	2.146e^-4	0.619	INTERGENIC
2R	5740205	2R_5740205_SNP [dm3] 2R_9852700_SNP [dm6]	A	C	2.146e^-4	0.619	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_chinmo
X	3006385	X_3006385_SNP [dm3] X_3112352_SNP [dm6]	A	G	2.148e^-4	0.619	INTRON kirre
2L	8531363	2L_8531363_SNP [dm3] 2L_8531363_SNP [dm6]	A	T	2.151e^-4	0.619	INTRON CG17834
2R	15892467	2R_15892467_SNP [dm3] 2R_20004962_SNP [dm6]	A	T	2.165e^-4	0.619	NON_SYNONYMOUS_CODING CG16898
2R	15892469	2R_15892469_INS [dm3] 2R_20004964_INS [dm6]	TGG	ACATT	2.165e^-4	0.619
2L	2372110	2L_2372110_SNP [dm3] 2L_2372110_SNP [dm6]	T	A	2.169e^-4	0.619	UPSTREAM CG3597 DOWNSTREAM CG3609 INTERGENIC
2R	5743682	2R_5743682_SNP [dm3] 2R_9856177_SNP [dm6]	G	A	2.169e^-4	0.619	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24824602	3R_24824602_SNP [dm3] 3R_28998880_SNP [dm6]	T	C	2.174e^-4	0.619	INTRON wat
3L	17985868	3L_17985868_SNP [dm3] 3L_17992768_SNP [dm6]	C	G	2.176e^-4	0.619	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18016046	3L_18016046_SNP [dm3] 3L_18022946_SNP [dm6]	C	T	2.177e^-4	0.619	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	23019195	3R_23019195_SNP [dm3] 3R_27193473_SNP [dm6]	C	T	2.178e^-4	0.619	INTRON Ser	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	10630895	2R_10630895_SNP [dm3] 2R_14743390_SNP [dm6]	G	A	2.186e^-4	0.62	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5737096	2R_5737096_SNP [dm3] 2R_9849591_SNP [dm6]	C	T	2.192e^-4	0.621	SYNONYMOUS_CODING CG1671	TF binding site mE1_TFBS_sens
3R	15189320	3R_15189320_SNP [dm3] 3R_19363598_SNP [dm6]	C	G	2.198e^-4	0.622	INTERGENIC
2L	6754539	2L_6754539_SNP [dm3] 2L_6754539_SNP [dm6]	T	C	2.207e^-4	0.623	SYNONYMOUS_CODING CG11221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16868463	X_16868463_SNP [dm3] X_16974430_SNP [dm6]	C	T	2.216e^-4	0.624	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	7531919	2L_7531919_SNP [dm3] 2L_7531919_SNP [dm6]	C	A	2.217e^-4	0.624	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3029522	3L_3029522_SNP [dm3] 3L_3029522_SNP [dm6]	A	T	2.220e^-4	0.624	INTERGENIC
2L	5968517	2L_5968517_SNP [dm3] 2L_5968517_SNP [dm6]	T	A	2.229e^-4	0.625	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4414343	3R_4414343_SNP [dm3] 3R_8588621_SNP [dm6]	C	G	2.229e^-4	0.625	INTRON 5-HT2B	TF binding site mE1_TFBS_sbb
3L	16346993	3L_16346993_SNP [dm3] 3L_16353893_SNP [dm6]	A	G	2.238e^-4	0.626	SYNONYMOUS_CODING Pdh DOWNSTREAM CG4933 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16350290	3L_16350290_SNP [dm3] 3L_16357190_SNP [dm6]	C	T	2.238e^-4	0.626	UPSTREAM CG45057 INTRON CG45057
2R	5740250	2R_5740250_SNP [dm3] 2R_9852745_SNP [dm6]	G	A	2.253e^-4	0.627	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_chinmo
2L	2372098	2L_2372098_INS [dm3] 2L_2372098_INS [dm6]	T	TT	2.259e^-4	0.627	UPSTREAM CG3597 DOWNSTREAM CG3609 INTERGENIC
3L	9577367	3L_9577367_SNP [dm3] 3L_9584267_SNP [dm6]	A	G	2.260e^-4	0.627	INTRON CG42673
3L	18012710	3L_18012710_SNP [dm3] 3L_18019610_SNP [dm6]	T	A	2.262e^-4	0.627	INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	2893646	2L_2893646_SNP [dm3] 2L_2893646_SNP [dm6]	T	A	2.263e^-4	0.627	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26409090	3R_26409090_SNP [dm3] 3R_30583368_SNP [dm6]	A	G	2.266e^-4	0.627	DOWNSTREAM CG9717 INTRON Rpt6R	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	12779940	2R_12779940_SNP [dm3] 2R_16892435_SNP [dm6]	G	A	2.266e^-4	0.627	INTRON CG8910	TF binding site mE1_TFBS_inv
2R	18260231	2R_18260231_SNP [dm3] 2R_22372726_SNP [dm6]	A	G	2.291e^-4	0.631	DOWNSTREAM CR44759 INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8540435	2L_8540435_SNP [dm3] 2L_8540435_SNP [dm6]	C	A	2.298e^-4	0.631	INTRON CG17834
3R	26415034	3R_26415034_SNP [dm3] 3R_30589312_SNP [dm6]	C	A	2.298e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22265084	X_22265084_SNP [dm3] X_22863248_SNP [dm6]	T	C	2.299e^-4	0.631	INTRON CG42346
3L	12717401	3L_12717401_SNP [dm3] 3L_12724301_SNP [dm6]	A	T	2.305e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9686565	2R_9686565_SNP [dm3] 2R_13799060_SNP [dm6]	G	T	2.305e^-4	0.631	INTRON Cpr50Cb
2L	17072940	2L_17072940_SNP [dm3] 2L_17072940_SNP [dm6]	T	C	2.307e^-4	0.631	INTERGENIC
3L	9617737	3L_9617737_SNP [dm3] 3L_9624637_SNP [dm6]	A	T	2.309e^-4	0.631	NON_SYNONYMOUS_CODING CG3335 DOWNSTREAM LanB2	TF binding site mE1_TFBS_sens
3R	5211460	3R_5211460_SNP [dm3] 3R_9385738_SNP [dm6]	G	A	2.318e^-4	0.632	INTRON FER
2L	3210293	2L_3210293_SNP [dm3] 2L_3210293_SNP [dm6]	C	T	2.319e^-4	0.632	UPSTREAM CR45336 INTERGENIC
2L	12554476	2L_12554476_SNP [dm3] 2L_12554476_SNP [dm6]	T	C	2.330e^-4	0.634	INTERGENIC
2L	8504943	2L_8504943_SNP [dm3] 2L_8504943_SNP [dm6]	T	C	2.332e^-4	0.634	INTRON Dh31
2L	3827837	2L_3827837_INS [dm3] 2L_3827837_INS [dm6]	A	AA	2.341e^-4	0.636	DOWNSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7171855	2L_7171855_SNP [dm3] 2L_7171855_SNP [dm6]	T	C	2.347e^-4	0.636	INTERGENIC
2R	11750945	2R_11750945_SNP [dm3] 2R_15863440_SNP [dm6]	A	C	2.349e^-4	0.636	UPSTREAM Gpo-1 DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7799446	2R_7799446_SNP [dm3] 2R_11911941_SNP [dm6]	T	C	2.355e^-4	0.637	INTRON CG13183
X	19980754	X_19980754_SNP [dm3] X_20086721_SNP [dm6]	G	A	2.367e^-4	0.637	INTERGENIC
2R	14820131	2R_14820131_SNP [dm3] 2R_18932626_SNP [dm6]	G	C	2.369e^-4	0.637	INTRON sano	TF binding site mE1_TFBS_inv
3L	12641282	3L_12641282_DEL [dm3] 3L_12648182_DEL [dm6]	TACTTACTTGTTACTTACAC...	T	2.373e^-4	0.637	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2L	8540521	2L_8540521_SNP [dm3] 2L_8540521_SNP [dm6]	G	A	2.383e^-4	0.637	NON_SYNONYMOUS_CODING CG17834	TF binding site BDTNP1_TFBS_twi
2L	9318576	2L_9318576_SNP [dm3] 2L_9318576_SNP [dm6]	A	G	2.385e^-4	0.637	INTERGENIC
2R	8388152	2R_8388152_SNP [dm3] 2R_12500647_SNP [dm6]	T	G	2.399e^-4	0.637	NON_SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18169434	X_18169434_DEL [dm3] X_18275401_DEL [dm6]	AATATA	A	2.400e^-4	0.637	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20022912	2R_20022912_SNP [dm3] 2R_24135389_SNP [dm6]	T	C	2.409e^-4	0.637	UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8 INTRON CG4065
3R	5770348	3R_5770348_SNP [dm3] 3R_9944626_SNP [dm6]	A	G	2.409e^-4	0.637	UTR_3_PRIME Glut4EF INTRON Glut4EF
2L	13057901	2L_13057901_SNP [dm3] 2L_13057901_SNP [dm6]	C	A	2.410e^-4	0.637	INTRON CG9932
2R	7835615	2R_7835615_SNP [dm3] 2R_11948110_SNP [dm6]	G	T	2.412e^-4	0.637	INTRON CG13188
2L	9857381	2L_9857381_SNP [dm3] 2L_9857381_SNP [dm6]	A	C	2.413e^-4	0.637	INTRON nAChRalpha6
3R	23073130	3R_23073130_SNP [dm3] 3R_27247408_SNP [dm6]	A	G	2.415e^-4	0.637	SYNONYMOUS_CODING CG5984 DOWNSTREAM CG5987	TF binding site mE1_TFBS_chinmo
3R	10763635	3R_10763635_SNP [dm3] 3R_14937913_SNP [dm6]	C	A	2.416e^-4	0.637	INTERGENIC
2R	13189221	2R_13189221_SNP [dm3] 2R_17301716_SNP [dm6]	T	C	2.419e^-4	0.637	INTRON mbl
2L	6753909	2L_6753909_SNP [dm3] 2L_6753909_SNP [dm6]	T	A	2.421e^-4	0.637	INTRON CG11221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1578579	2L_1578579_SNP [dm3] 2L_1578579_SNP [dm6]	G	T	2.423e^-4	0.637	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1578586	2L_1578586_SNP [dm3] 2L_1578586_SNP [dm6]	C	A	2.423e^-4	0.637	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25902847	3R_25902847_SNP [dm3] 3R_30077125_SNP [dm6]	A	T	2.425e^-4	0.637	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4212767	3L_4212767_SNP [dm3] 3L_4212767_SNP [dm6]	G	A	2.430e^-4	0.637	SYNONYMOUS_CODING Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
X	14372655	X_14372655_SNP [dm3] X_14478622_SNP [dm6]	A	G	2.431e^-4	0.637	INTRON CG9411
2L	6971741	2L_6971741_SNP [dm3] 2L_6971741_SNP [dm6]	T	A	2.441e^-4	0.637	UPSTREAM CR43142 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad
2R	12008608	2R_12008608_SNP [dm3] 2R_16121103_SNP [dm6]	G	A	2.443e^-4	0.637	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
X	22260685	X_22260685_DEL [dm3] X_22858849_DEL [dm6]	GTAG	G	2.443e^-4	0.637	INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19289890	X_19289890_SNP [dm3] X_19395857_SNP [dm6]	A	G	2.445e^-4	0.637	INTRON kek5
2R	6077523	2R_6077523_SNP [dm3] 2R_10190018_SNP [dm6]	A	G	2.447e^-4	0.637	INTRON KCNQ
3R	11590659	3R_11590659_SNP [dm3] 3R_15764937_SNP [dm6]	C	T	2.452e^-4	0.637	INTERGENIC
2R	7786599	2R_7786599_SNP [dm3] 2R_11899094_SNP [dm6]	C	G	2.458e^-4	0.637	UPSTREAM Zip48C INTRON MCPH1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	11678671	3R_11678671_SNP [dm3] 3R_15852949_SNP [dm6]	G	A	2.458e^-4	0.637	DOWNSTREAM Hmt-1 INTRON cv-d	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11652740	X_11652740_SNP [dm3] X_11758707_SNP [dm6]	T	C	2.459e^-4	0.637	INTRON m
3L	7604878	3L_7604878_DEL [dm3] 3L_7611778_DEL [dm6]	ACGTTGA	A	2.464e^-4	0.638	INTRON CG33275
3L	16924626	3L_16924626_SNP [dm3] 3L_16931526_SNP [dm6]	A	T	2.480e^-4	0.641	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
3L	12641244	3L_12641244_SNP [dm3] 3L_12648144_SNP [dm6]	G	A	2.486e^-4	0.641	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26858379	3R_26858379_INS [dm3] 3R_31032657_INS [dm6]	G	GAAG	2.490e^-4	0.641	INTERGENIC
3R	10763684	3R_10763684_SNP [dm3] 3R_14937962_SNP [dm6]	T	G	2.491e^-4	0.641	INTERGENIC
3L	18024288	3L_18024288_SNP [dm3] 3L_18031188_SNP [dm6]	G	T	2.494e^-4	0.641	INTRON Eip75B
3L	14189540	3L_14189540_SNP [dm3] 3L_14196440_SNP [dm6]	T	C	2.498e^-4	0.641	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14955028	2R_14955028_SNP [dm3] 2R_19067523_SNP [dm6]	A	C	2.504e^-4	0.641	UTR_5_PRIME 5-HT1A
2L	15565758	2L_15565758_SNP [dm3] 2L_15565758_SNP [dm6]	C	G	2.504e^-4	0.641	INTRON kek3
X	18547548	X_18547548_SNP [dm3] X_18653515_SNP [dm6]	T	C	2.508e^-4	0.641	UTR_3_PRIME CG6659 UPSTREAM Ing3	TF binding site BDTNP1_TFBS_dl
3R	26066816	3R_26066816_SNP [dm3] 3R_30241094_SNP [dm6]	T	A	2.516e^-4	0.642	DOWNSTREAM CG9737 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6504259	X_6504259_SNP [dm3] X_6610226_SNP [dm6]	A	T	2.519e^-4	0.642	INTRON pigs
2L	7095826	2L_7095826_SNP [dm3] 2L_7095826_SNP [dm6]	T	C	2.527e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18012060	3L_18012060_SNP [dm3] 3L_18018960_SNP [dm6]	A	G	2.528e^-4	0.642	INTRON Eip75B
2L	8534539	2L_8534539_SNP [dm3] 2L_8534539_SNP [dm6]	G	A	2.534e^-4	0.643	INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	1777479	3L_1777479_SNP [dm3] 3L_1777479_SNP [dm6]	T	C	2.545e^-4	0.644	UTR_5_PRIME mRpL46 UPSTREAM CG2021 DOWNSTREAM CG12018	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	17904900	X_17904900_SNP [dm3] X_18010867_SNP [dm6]	T	C	2.547e^-4	0.644	INTRON Sh
2L	1240268	2L_1240268_SNP [dm3] 2L_1240268_SNP [dm6]	G	A	2.549e^-4	0.644	SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo
2L	1932265	2L_1932265_SNP [dm3] 2L_1932265_SNP [dm6]	C	T	2.557e^-4	0.645	INTRON CG7337
2L	1171740	2L_1171740_SNP [dm3] 2L_1171740_SNP [dm6]	C	T	2.557e^-4	0.645	SYNONYMOUS_CODING CG5118 DOWNSTREAM CG31922	TF binding site mE1_TFBS_cad
3R	9649487	3R_9649487_SNP [dm3] 3R_13823765_SNP [dm6]	C	A	2.577e^-4	0.649	INTERGENIC
2L	4929944	2L_4929944_SNP [dm3] 2L_4929944_SNP [dm6]	T	G	2.579e^-4	0.649	INTRON hoe1
3L	18011709	3L_18011709_SNP [dm3] 3L_18018609_SNP [dm6]	C	T	2.589e^-4	0.65	INTRON Eip75B
3R	12246195	3R_12246195_SNP [dm3] 3R_16420473_SNP [dm6]	C	G	2.591e^-4	0.65	INTERGENIC
2L	15336619	2L_15336619_SNP [dm3] 2L_15336619_SNP [dm6]	C	G	2.598e^-4	0.651	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9619431	3L_9619431_SNP [dm3] 3L_9626331_SNP [dm6]	T	C	2.609e^-4	0.652	NON_SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8511970	2L_8511970_SNP [dm3] 2L_8511970_SNP [dm6]	G	A	2.613e^-4	0.653	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	12419808	2R_12419808_INS [dm3] 2R_16532303_INS [dm6]	T	TT	2.618e^-4	0.653	INTRON Sema-2a
3L	8688053	3L_8688053_SNP [dm3] 3L_8694953_SNP [dm6]	T	C	2.626e^-4	0.653	INTERGENIC
2R	13184610	2R_13184610_SNP [dm3] 2R_17297105_SNP [dm6]	A	C	2.627e^-4	0.653	INTRON mbl
2R	5734547	2R_5734547_SNP [dm3] 2R_9847042_SNP [dm6]	A	G	2.629e^-4	0.653	UPSTREAM Orc6 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	19345565	3R_19345565_SNP [dm3] 3R_23519843_SNP [dm6]	A	G	2.634e^-4	0.653	UPSTREAM Irk2 DOWNSTREAM CG10177 INTERGENIC
2R	18260132	2R_18260132_SNP [dm3] 2R_22372627_SNP [dm6]	A	C	2.642e^-4	0.653	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2L	2926130	2L_2926130_SNP [dm3] 2L_2926130_SNP [dm6]	G	A	2.644e^-4	0.653	INTRON lilli
2L	8528677	2L_8528677_SNP [dm3] 2L_8528677_SNP [dm6]	A	T	2.645e^-4	0.653	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
2L	18596550	2L_18596550_SNP [dm3] 2L_18596550_SNP [dm6]	G	A	2.646e^-4	0.653	SYNONYMOUS_CODING amos	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22030755	3R_22030755_SNP [dm3] 3R_26205033_SNP [dm6]	C	T	2.652e^-4	0.654	INTRON CR44320
2L	3545529	2L_3545529_SNP [dm3] 2L_3545529_SNP [dm6]	C	A	2.655e^-4	0.654	UTR_5_PRIME drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6595867	2L_6595867_SNP [dm3] 2L_6595867_SNP [dm6]	A	T	2.663e^-4	0.654	INTRON CG11319
2R	12432962	2R_12432962_SNP [dm3] 2R_16545457_SNP [dm6]	C	T	2.664e^-4	0.654	INTERGENIC
3L	11397563	3L_11397563_SNP [dm3] 3L_11404463_SNP [dm6]	G	T	2.672e^-4	0.654	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	18895745	3R_18895745_SNP [dm3] 3R_23070023_SNP [dm6]	G	C	2.673e^-4	0.654	DOWNSTREAM CG13830 INTERGENIC
2R	11143713	2R_11143713_DEL [dm3] 2R_15256208_DEL [dm6]	AGTGTTAAATTGTTCA...	A	2.674e^-4	0.654	INTRON scb	TF binding site mE1_TFBS_cad
3L	15682615	3L_15682615_DEL [dm3] 3L_15689515_DEL [dm6]	TTT	T	2.676e^-4	0.654	UTR_5_PRIME CG34451 INTRON CG34451
X	20746539	X_20746539_SNP [dm3] X_20875512_SNP [dm6]	A	G	2.684e^-4	0.654	DOWNSTREAM CR11235 INTRON shakB
2R	16917375	2R_16917375_SNP [dm3] 2R_21029870_SNP [dm6]	C	A	2.686e^-4	0.654	EXON CR45148
2L	6739748	2L_6739748_SNP [dm3] 2L_6739748_SNP [dm6]	C	T	2.688e^-4	0.654	SYNONYMOUS_CODING TTLL3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24350631	3R_24350631_DEL [dm3] 3R_28524909_DEL [dm6]	GAGG	G	2.690e^-4	0.654	CODON_DELETION Ppn INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16588237	3R_16588237_SNP [dm3] 3R_20762515_SNP [dm6]	G	C	2.705e^-4	0.656	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8531677	2L_8531677_SNP [dm3] 2L_8531677_SNP [dm6]	C	T	2.717e^-4	0.656	INTRON CG17834
3L	975748	3L_975748_SNP [dm3] 3L_975748_SNP [dm6]	T	A	2.718e^-4	0.656	INTRON Glut1
3L	17979135	3L_17979135_SNP [dm3] 3L_17986035_SNP [dm6]	A	T	2.725e^-4	0.656	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15461974	3R_15461974_SNP [dm3] 3R_19636252_SNP [dm6]	A	T	2.727e^-4	0.656	DOWNSTREAM CG34138 INTRON subdued
3L	2439991	3L_2439991_DEL [dm3] 3L_2439991_DEL [dm6]	CAC	C	2.727e^-4	0.656	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	2041724	2L_2041724_SNP [dm3] 2L_2041724_SNP [dm6]	C	G	2.733e^-4	0.656	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16574761	3R_16574761_SNP [dm3] 3R_20749039_SNP [dm6]	C	A	2.739e^-4	0.656	UTR_5_PRIME Prosalpha4T1 INTRON CG42322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	975754	3L_975754_SNP [dm3] 3L_975754_SNP [dm6]	T	C	2.741e^-4	0.656	INTRON Glut1
X	13315925	X_13315925_DEL [dm3] X_13421892_DEL [dm6]	AA	A	2.742e^-4	0.656	DOWNSTREAM Set2 INTERGENIC
3R	3623196	3R_3623196_SNP [dm3] 3R_7797474_SNP [dm6]	G	A	2.744e^-4	0.656	SYNONYMOUS_CODING CG18744 DOWNSTREAM CG2641
3L	4142796	3L_4142796_SNP [dm3] 3L_4142796_SNP [dm6]	C	T	2.747e^-4	0.656	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3L	4142801	3L_4142801_SNP [dm3] 3L_4142801_SNP [dm6]	G	A	2.747e^-4	0.656	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3L	10679483	3L_10679483_SNP [dm3] 3L_10686383_SNP [dm6]	C	G	2.750e^-4	0.656	INTRON simj
3L	7748932	3L_7748932_SNP [dm3] 3L_7755832_SNP [dm6]	T	G	2.754e^-4	0.656	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
X	22263482	X_22263482_SNP [dm3] X_22861646_SNP [dm6]	G	C	2.762e^-4	0.657	INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	2141868	3L_2141868_SNP [dm3] 3L_2141868_SNP [dm6]	C	T	2.771e^-4	0.659	INTRON zormin	TF binding site mE1_TFBS_inv
3R	26940232	3R_26940232_SNP [dm3] 3R_31114510_SNP [dm6]	T	C	2.775e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_inv
2L	8506089	2L_8506089_SNP [dm3] 2L_8506089_SNP [dm6]	C	A	2.789e^-4	0.66	INTRON Dh31
3L	10527567	3L_10527567_SNP [dm3] 3L_10534467_SNP [dm6]	A	T	2.798e^-4	0.66	INTRON A2bp1
2L	8446739	2L_8446739_SNP [dm3] 2L_8446739_SNP [dm6]	A	G	2.799e^-4	0.66	SYNONYMOUS_CODING U26 UTR_3_PRIME U26 DOWNSTREAM CG31897
3R	12057447	3R_12057447_INS [dm3] 3R_16231725_INS [dm6]	A	AC	2.801e^-4	0.66	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	804115	3L_804115_SNP [dm3] 3L_804115_SNP [dm6]	C	T	2.802e^-4	0.66	UPSTREAM CG13898 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	19540538	3L_19540538_SNP [dm3] 3L_19547438_SNP [dm6]	C	A	2.803e^-4	0.66	SYNONYMOUS_CODING l_3_76BDr DOWNSTREAM Rcd7
3R	10315696	3R_10315696_SNP [dm3] 3R_14489974_SNP [dm6]	T	C	2.807e^-4	0.66	INTERGENIC
X	15380138	X_15380138_SNP [dm3] X_15486105_SNP [dm6]	G	A	2.811e^-4	0.66	SYNONYMOUS_CODING CG6340 UTR_3_PRIME CG6340 UPSTREAM Gmap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	8691373	3L_8691373_SNP [dm3] 3L_8698273_SNP [dm6]	G	T	2.819e^-4	0.66	INTERGENIC
X	22265207	X_22265207_SNP [dm3] X_22863371_SNP [dm6]	C	A	2.819e^-4	0.66	INTRON CG42346
3L	21120196	3L_21120196_SNP [dm3] 3L_21127096_SNP [dm6]	C	A	2.821e^-4	0.66	INTRON ko
2R	13191417	2R_13191417_SNP [dm3] 2R_17303912_SNP [dm6]	C	T	2.822e^-4	0.66	INTRON mbl
3R	10801807	3R_10801807_SNP [dm3] 3R_14976085_SNP [dm6]	T	A	2.828e^-4	0.66	INTERGENIC
3R	19066076	3R_19066076_SNP [dm3] 3R_23240354_SNP [dm6]	G	A	2.829e^-4	0.66	UPSTREAM CG4467 INTRON CG4467
3R	26388554	3R_26388554_SNP [dm3] 3R_30562832_SNP [dm6]	A	G	2.839e^-4	0.661	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9668794	2R_9668794_SNP [dm3] 2R_13781289_SNP [dm6]	T	A	2.841e^-4	0.661	INTRON Cpr50Ca
3R	11708220	3R_11708220_SNP [dm3] 3R_15882498_SNP [dm6]	G	A	2.862e^-4	0.664	INTERGENIC
2R	13851822	2R_13851822_SNP [dm3] 2R_17964317_SNP [dm6]	C	A	2.866e^-4	0.664	INTERGENIC
3R	24824142	3R_24824142_SNP [dm3] 3R_28998420_SNP [dm6]	A	G	2.866e^-4	0.664	INTRON wat
X	3343186	X_3343186_SNP [dm3] X_3449153_SNP [dm6]	A	G	2.872e^-4	0.664	UPSTREAM CG12535 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13034928	3L_13034928_SNP [dm3] 3L_13041828_SNP [dm6]	C	T	2.873e^-4	0.664	UTR_5_PRIME RpS4 UPSTREAM snoRNA:Psi28S-3327a DOWNSTREAM SRm160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	13853981	2R_13853981_SNP [dm3] 2R_17966476_SNP [dm6]	G	A	2.877e^-4	0.665	INTERGENIC
2L	9149545	2L_9149545_SNP [dm3] 2L_9149545_SNP [dm6]	G	T	2.888e^-4	0.666	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2448128	X_2448128_SNP [dm3] X_2554095_SNP [dm6]	G	C	2.891e^-4	0.666	UPSTREAM Pdfr INTRON Pdfr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22431694	3R_22431694_SNP [dm3] 3R_26605972_SNP [dm6]	G	T	2.895e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17336190	X_17336190_SNP [dm3] X_17442157_SNP [dm6]	G	C	2.905e^-4	0.668	INTRON CG12994
2R	14090109	2R_14090109_SNP [dm3] 2R_18202604_SNP [dm6]	T	C	2.909e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	985159	2L_985159_SNP [dm3] 2L_985159_SNP [dm6]	G	A	2.927e^-4	0.67	INTERGENIC
2R	18262285	2R_18262285_SNP [dm3] 2R_22374780_SNP [dm6]	C	A	2.930e^-4	0.67	UPSTREAM Rtf1 EXON CR44759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14510885	2R_14510885_SNP [dm3] 2R_18623380_SNP [dm6]	C	G	2.934e^-4	0.67	SYNONYMOUS_CODING Atg7 DOWNSTREAM CG5335
2R	14955027	2R_14955027_SNP [dm3] 2R_19067522_SNP [dm6]	A	C	2.934e^-4	0.67	UTR_5_PRIME 5-HT1A
2R	11880074	2R_11880074_SNP [dm3] 2R_15992569_SNP [dm6]	C	T	2.944e^-4	0.671	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12026433	2R_12026433_SNP [dm3] 2R_16138928_SNP [dm6]	A	G	2.946e^-4	0.671	DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19466062	2R_19466062_SNP [dm3] 2R_23578539_SNP [dm6]	C	A	2.952e^-4	0.671	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5783305	2R_5783305_SNP [dm3] 2R_9895800_SNP [dm6]	C	A	2.955e^-4	0.671	NON_SYNONYMOUS_CODING CG30007
3R	24764713	3R_24764713_SNP [dm3] 3R_28938991_SNP [dm6]	G	C	2.959e^-4	0.671	INTRON CG14521
3L	12402780	3L_12402780_SNP [dm3] 3L_12409680_SNP [dm6]	A	G	2.966e^-4	0.671	INTRON CG32103
2L	16646724	2L_16646724_SNP [dm3] 2L_16646724_SNP [dm6]	C	G	2.968e^-4	0.671	INTRON CG42389
2R	18940258	2R_18940258_SNP [dm3] 2R_23052735_SNP [dm6]	C	A	2.972e^-4	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4142811	3L_4142811_SNP [dm3] 3L_4142811_SNP [dm6]	T	G	2.973e^-4	0.671	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3L	18021255	3L_18021255_SNP [dm3] 3L_18028155_SNP [dm6]	C	T	2.977e^-4	0.671	INTRON Eip75B
3L	18021288	3L_18021288_SNP [dm3] 3L_18028188_SNP [dm6]	T	A	2.977e^-4	0.671	INTRON Eip75B
3L	12641247	3L_12641247_SNP [dm3] 3L_12648147_SNP [dm6]	A	C	2.980e^-4	0.671	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16917322	2R_16917322_SNP [dm3] 2R_21029817_SNP [dm6]	T	G	2.996e^-4	0.671	INTRON CR45148
2L	6185718	2L_6185718_SNP [dm3] 2L_6185718_SNP [dm6]	G	T	2.997e^-4	0.671	INTRON CG34380	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	10201968	2R_10201968_SNP [dm3] 2R_14314463_SNP [dm6]	G	A	2.999e^-4	0.671	INTRON Shroom	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	679718	2L_679718_SNP [dm3] 2L_679718_SNP [dm6]	T	C	3.005e^-4	0.671	INTRON ds
2R	15074805	2R_15074805_SNP [dm3] 2R_19187300_SNP [dm6]	G	C	3.005e^-4	0.671	INTRON hppy
3R	19066093	3R_19066093_SNP [dm3] 3R_23240371_SNP [dm6]	T	G	3.009e^-4	0.671	UPSTREAM CG4467 INTRON CG4467
3R	20621658	3R_20621658_SNP [dm3] 3R_24795936_SNP [dm6]	C	T	3.010e^-4	0.671	INTRON Ets96B	TF binding site mE1_TFBS_chinmo
2L	4622898	2L_4622898_SNP [dm3] 2L_4622898_SNP [dm6]	T	C	3.011e^-4	0.671	INTERGENIC
2L	726331	2L_726331_SNP [dm3] 2L_726331_SNP [dm6]	A	T	3.019e^-4	0.671	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14955609	2R_14955609_SNP [dm3] 2R_19068104_SNP [dm6]	T	C	3.020e^-4	0.671	INTRON 5-HT1A
3R	23267896	3R_23267896_SNP [dm3] 3R_27442174_SNP [dm6]	C	T	3.021e^-4	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18015182	2R_18015182_SNP [dm3] 2R_22127677_SNP [dm6]	C	T	3.032e^-4	0.672	UPSTREAM NtR & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2L	6940046	2L_6940046_SNP [dm3] 2L_6940046_SNP [dm6]	G	T	3.037e^-4	0.672	INTRON CG18304	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	12641249	3L_12641249_SNP [dm3] 3L_12648149_SNP [dm6]	A	G	3.040e^-4	0.672	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	17088169	2L_17088169_SNP [dm3] 2L_17088169_SNP [dm6]	T	C	3.045e^-4	0.672	SYNONYMOUS_CODING CG12620
2L	7171821	2L_7171821_SNP [dm3] 2L_7171821_SNP [dm6]	A	G	3.047e^-4	0.672	INTERGENIC
2L	725826	2L_725826_SNP [dm3] 2L_725826_SNP [dm6]	G	A	3.050e^-4	0.672	INTERGENIC
3L	20632785	3L_20632785_SNP [dm3] 3L_20639685_SNP [dm6]	A	G	3.055e^-4	0.672	SYNONYMOUS_CODING CG13251	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20022898	2R_20022898_SNP [dm3] 2R_24135375_SNP [dm6]	T	C	3.060e^-4	0.672	UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8 INTRON CG4065
3L	975731	3L_975731_SNP [dm3] 3L_975731_SNP [dm6]	C	T	3.066e^-4	0.672	INTRON Glut1
2R	13233848	2R_13233848_SNP [dm3] 2R_17346343_SNP [dm6]	G	A	3.074e^-4	0.672	INTRON mbl
2L	3280021	2L_3280021_SNP [dm3] 2L_3280021_SNP [dm6]	T	G	3.082e^-4	0.672	UPSTREAM CG3332 INTRON CG3332
X	4732883	X_4732883_SNP [dm3] X_4838850_SNP [dm6]	A	G	3.082e^-4	0.672	INTERGENIC
2L	6329506	2L_6329506_SNP [dm3] 2L_6329506_SNP [dm6]	C	A	3.085e^-4	0.672	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18566260	X_18566260_SNP [dm3] X_18672227_SNP [dm6]	C	A	3.086e^-4	0.672	INTERGENIC
2L	9302384	2L_9302384_SNP [dm3] 2L_9302384_SNP [dm6]	G	A	3.096e^-4	0.672	UTR_3_PRIME Ggamma30A
2R	8457068	2R_8457068_SNP [dm3] 2R_12569563_SNP [dm6]	T	C	3.107e^-4	0.672	SYNONYMOUS_CODING Ak6 UPSTREAM stil DOWNSTREAM Cyp301a1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	19476696	X_19476696_SNP [dm3] X_19582663_SNP [dm6]	A	G	3.114e^-4	0.672	UPSTREAM CG14218 & 1 other INTERGENIC
2R	5864445	2R_5864445_SNP [dm3] 2R_9976940_SNP [dm6]	T	G	3.114e^-4	0.672	DOWNSTREAM CR43948 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13853992	2R_13853992_SNP [dm3] 2R_17966487_SNP [dm6]	T	C	3.120e^-4	0.672	INTERGENIC
X	5164281	X_5164281_SNP [dm3] X_5270248_SNP [dm6]	A	G	3.120e^-4	0.672	INTERGENIC
3R	26387922	3R_26387922_SNP [dm3] 3R_30562200_SNP [dm6]	C	T	3.126e^-4	0.672	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	10322692	2L_10322692_SNP [dm3] 2L_10322692_SNP [dm6]	A	T	3.127e^-4	0.672	UPSTREAM CG5381 & 1 other INTRON CG5381 & 1 other
3R	10302810	3R_10302810_SNP [dm3] 3R_14477088_SNP [dm6]	A	G	3.130e^-4	0.672	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26407772	3R_26407772_SNP [dm3] 3R_30582050_SNP [dm6]	A	G	3.133e^-4	0.672	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
2L	2081344	2L_2081344_SNP [dm3] 2L_2081344_SNP [dm6]	T	C	3.133e^-4	0.672	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3
2R	16917298	2R_16917298_SNP [dm3] 2R_21029793_SNP [dm6]	G	C	3.136e^-4	0.672	INTRON CR45148
2L	14005169	2L_14005169_SNP [dm3] 2L_14005169_SNP [dm6]	C	A	3.139e^-4	0.672	INTERGENIC	TF binding site mE1_TFBS_cad
3R	11676667	3R_11676667_SNP [dm3] 3R_15850945_SNP [dm6]	C	T	3.139e^-4	0.672	SYNONYMOUS_CODING cv-d	TF binding site mE1_TFBS_chinmo
3R	11676721	3R_11676721_SNP [dm3] 3R_15850999_SNP [dm6]	A	G	3.139e^-4	0.672	SYNONYMOUS_CODING cv-d	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8506093	2L_8506093_SNP [dm3] 2L_8506093_SNP [dm6]	A	C	3.141e^-4	0.672	INTRON Dh31
2R	6229901	2R_6229901_SNP [dm3] 2R_10342396_SNP [dm6]	G	T	3.144e^-4	0.672	INTRON CG42732
2R	10466241	2R_10466241_SNP [dm3] 2R_14578736_SNP [dm6]	C	T	3.144e^-4	0.672	INTRON ttv
2L	8528781	2L_8528781_SNP [dm3] 2L_8528781_SNP [dm6]	G	C	3.146e^-4	0.672	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9052025	2L_9052025_SNP [dm3] 2L_9052025_SNP [dm6]	A	C	3.148e^-4	0.672	UTR_3_PRIME CG31708
3R	24304641	3R_24304641_SNP [dm3] 3R_28478919_SNP [dm6]	T	A	3.153e^-4	0.672	INTERGENIC
2R	20118490	2R_20118490_SNP [dm3] 2R_24230967_SNP [dm6]	A	G	3.156e^-4	0.672	INTERGENIC
3R	26388745	3R_26388745_SNP [dm3] 3R_30563023_SNP [dm6]	A	T	3.161e^-4	0.672	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	17930072	3L_17930072_SNP [dm3] 3L_17936972_SNP [dm6]	A	G	3.162e^-4	0.672	INTRON CG43174
3R	22919445	3R_22919445_SNP [dm3] 3R_27093723_SNP [dm6]	C	G	3.169e^-4	0.673	SYNONYMOUS_CODING CG14258 UPSTREAM CG14259
X	3143222	X_3143222_SNP [dm3] X_3249189_SNP [dm6]	A	T	3.173e^-4	0.673	SYNONYMOUS_CODING Pig1 UPSTREAM Sgs4 INTRON dnc
3R	26407274	3R_26407274_SNP [dm3] 3R_30581552_SNP [dm6]	A	C	3.176e^-4	0.673	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
2L	2372081	2L_2372081_SNP [dm3] 2L_2372081_SNP [dm6]	T	A	3.183e^-4	0.673	UPSTREAM CG3597 DOWNSTREAM CG3609 INTERGENIC
3L	18021568	3L_18021568_SNP [dm3] 3L_18028468_SNP [dm6]	G	T	3.188e^-4	0.673	INTRON Eip75B
2L	5379014	2L_5379014_DEL [dm3] 2L_5379014_DEL [dm6]	GT	A	3.189e^-4	0.673	DOWNSTREAM CR42850 INTERGENIC
2R	11880191	2R_11880191_SNP [dm3] 2R_15992686_SNP [dm6]	C	G	3.189e^-4	0.673	UTR_5_PRIME CG8320 UPSTREAM Pex11 DOWNSTREAM ATPCL	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22640344	3R_22640344_SNP [dm3] 3R_26814622_SNP [dm6]	G	A	3.193e^-4	0.673	INTRON Tl
2L	8081271	2L_8081271_SNP [dm3] 2L_8081271_SNP [dm6]	G	A	3.195e^-4	0.673	INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	798006	3L_798006_SNP [dm3] 3L_798006_SNP [dm6]	G	A	3.203e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	24824152	3R_24824152_SNP [dm3] 3R_28998430_SNP [dm6]	G	C	3.203e^-4	0.673	INTRON wat
3L	3925655	3L_3925655_SNP [dm3] 3L_3925655_SNP [dm6]	C	A	3.219e^-4	0.673	UPSTREAM Eip63F-1 INTRON Eip63F-1
X	7939965	X_7939965_DEL [dm3] X_8045932_DEL [dm6]	CT	C	3.225e^-4	0.673	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
2L	10556854	2L_10556854_SNP [dm3] 2L_10556854_SNP [dm6]	T	C	3.230e^-4	0.673	INTRON Trim9
2R	18015691	2R_18015691_SNP [dm3] 2R_22128186_SNP [dm6]	A	G	3.239e^-4	0.673	UPSTREAM GM130 INTRON NtR	TF binding site mE1_TFBS_cad
3R	19066109	3R_19066109_SNP [dm3] 3R_23240387_SNP [dm6]	C	G	3.243e^-4	0.673	UPSTREAM CG4467 INTRON CG4467
3L	1444133	3L_1444133_INS [dm3] 3L_1444133_INS [dm6]	T	TT	3.243e^-4	0.673	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26858335	3R_26858335_SNP [dm3] 3R_31032613_SNP [dm6]	T	C	3.245e^-4	0.673	INTERGENIC
2L	7201764	2L_7201764_SNP [dm3] 2L_7201764_SNP [dm6]	C	T	3.245e^-4	0.673	INTRON CG4502
3R	13065893	3R_13065893_SNP [dm3] 3R_17240171_SNP [dm6]	A	G	3.248e^-4	0.673	INTRON beat-IIb
2L	5382358	2L_5382358_SNP [dm3] 2L_5382358_SNP [dm6]	A	T	3.249e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10767207	3R_10767207_SNP [dm3] 3R_14941485_SNP [dm6]	G	A	3.255e^-4	0.673	INTERGENIC
3R	19920244	3R_19920244_SNP [dm3] 3R_24094522_SNP [dm6]	T	C	3.258e^-4	0.673	INTRON 4EHP
3L	803849	3L_803849_SNP [dm3] 3L_803849_SNP [dm6]	G	A	3.262e^-4	0.673	NON_SYNONYMOUS_CODING CG13898	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	18538006	X_18538006_SNP [dm3] X_18643973_SNP [dm6]	G	A	3.265e^-4	0.673	INTRON Rip11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1487346	3L_1487346_SNP [dm3] 3L_1487346_SNP [dm6]	G	A	3.267e^-4	0.673	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	1777433	3L_1777433_SNP [dm3] 3L_1777433_SNP [dm6]	A	T	3.270e^-4	0.673	UPSTREAM mRpL46 & 1 other DOWNSTREAM CG12018 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	13258082	3L_13258082_SNP [dm3] 3L_13264982_SNP [dm6]	G	C	3.272e^-4	0.673	INTRON caps
X	19997437	X_19997437_SNP [dm3] X_20103404_SNP [dm6]	T	A	3.274e^-4	0.673	INTERGENIC
3L	18021589	3L_18021589_SNP [dm3] 3L_18028489_SNP [dm6]	G	A	3.277e^-4	0.673	INTRON Eip75B
3R	10688193	3R_10688193_SNP [dm3] 3R_14862471_SNP [dm6]	A	G	3.279e^-4	0.673	INTRON btsz
X	7940066	X_7940066_SNP [dm3] X_8046033_SNP [dm6]	T	C	3.282e^-4	0.673	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
2R	19542592	2R_19542592_SNP [dm3] 2R_23655069_SNP [dm6]	G	A	3.282e^-4	0.673	DOWNSTREAM retn INTERGENIC
2L	2372154	2L_2372154_SNP [dm3] 2L_2372154_SNP [dm6]	C	G	3.284e^-4	0.673	UPSTREAM CG3597 DOWNSTREAM CG3609 INTERGENIC
2R	8928584	2R_8928584_SNP [dm3] 2R_13041079_SNP [dm6]	T	A	3.290e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5785120	2R_5785120_SNP [dm3] 2R_9897615_SNP [dm6]	C	T	3.312e^-4	0.676	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14082999	X_14082999_SNP [dm3] X_14188966_SNP [dm6]	C	T	3.316e^-4	0.676	UPSTREAM CG11585 INTERGENIC
3L	14992538	3L_14992538_SNP [dm3] 3L_14999438_SNP [dm6]	A	G	3.318e^-4	0.676	UPSTREAM Prosbeta2 INTRON mRpL39	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	9965535	2R_9965535_SNP [dm3] 2R_14078030_SNP [dm6]	A	T	3.323e^-4	0.676	INTRON Prosap
X	11098600	X_11098600_SNP [dm3] X_11204567_SNP [dm6]	C	G	3.325e^-4	0.676	INTERGENIC
3R	14893309	3R_14893309_SNP [dm3] 3R_19067587_SNP [dm6]	A	T	3.330e^-4	0.676	INTRON cdi
2R	11220968	2R_11220968_SNP [dm3] 2R_15333463_SNP [dm6]	G	A	3.331e^-4	0.676	INTRON Hr51
3L	12170323	3L_12170323_SNP [dm3] 3L_12177223_SNP [dm6]	C	T	3.338e^-4	0.677	UPSTREAM CAH2 INTERGENIC
2L	10704920	2L_10704920_SNP [dm3] 2L_10704920_SNP [dm6]	C	A	3.351e^-4	0.677	UTR_3_PRIME CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12779942	2R_12779942_SNP [dm3] 2R_16892437_SNP [dm6]	A	T	3.351e^-4	0.677	INTRON CG8910	TF binding site mE1_TFBS_inv
2L	1657752	2L_1657752_SNP [dm3] 2L_1657752_SNP [dm6]	T	G	3.352e^-4	0.677	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
2L	5860768	2L_5860768_SNP [dm3] 2L_5860768_SNP [dm6]	T	C	3.357e^-4	0.678	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8684653	3L_8684653_SNP [dm3] 3L_8691553_SNP [dm6]	C	G	3.365e^-4	0.678	INTERGENIC
X	12364194	X_12364194_SNP [dm3] X_12470161_SNP [dm6]	T	C	3.369e^-4	0.678	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16580490	3R_16580490_SNP [dm3] 3R_20754768_SNP [dm6]	A	G	3.371e^-4	0.678	INTRON CG42322
X	19289901	X_19289901_SNP [dm3] X_19395868_SNP [dm6]	G	A	3.381e^-4	0.68	INTRON kek5
3R	19214076	3R_19214076_SNP [dm3] 3R_23388354_SNP [dm6]	C	T	3.384e^-4	0.68	DOWNSTREAM CG31515 INTERGENIC	TF binding site mE1_TFBS_inv
3R	26415049	3R_26415049_SNP [dm3] 3R_30589327_SNP [dm6]	T	C	3.388e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6363666	2R_6363666_DEL [dm3] 2R_10476161_DEL [dm6]	AA	A	3.398e^-4	0.681	UPSTREAM whd INTRON whd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14918236	2L_14918236_SNP [dm3] 2L_14918236_SNP [dm6]	T	A	3.401e^-4	0.681	INTRON CG42313
3L	18012771	3L_18012771_SNP [dm3] 3L_18019671_SNP [dm6]	C	G	3.421e^-4	0.682	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	20022896	2R_20022896_SNP [dm3] 2R_24135373_SNP [dm6]	A	T	3.424e^-4	0.682	UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8 INTRON CG4065
X	6504260	X_6504260_SNP [dm3] X_6610227_SNP [dm6]	C	T	3.428e^-4	0.682	INTRON pigs
2R	16842093	2R_16842093_SNP [dm3] 2R_20954588_SNP [dm6]	G	A	3.438e^-4	0.682	DOWNSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18163833	2R_18163833_INS [dm3] 2R_22276328_INS [dm6]	A	AA	3.444e^-4	0.682	INTRON dve
2L	6829822	2L_6829822_SNP [dm3] 2L_6829822_SNP [dm6]	A	T	3.445e^-4	0.682	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2143471	3L_2143471_SNP [dm3] 3L_2143471_SNP [dm6]	C	T	3.450e^-4	0.682	INTRON zormin
2L	5038210	2L_5038210_SNP [dm3] 2L_5038210_SNP [dm6]	G	A	3.452e^-4	0.682	NON_SYNONYMOUS_CODING CG14042 UTR_5_PRIME SP555 UPSTREAM SP555 DOWNSTREAM Cg25C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	23222536	3R_23222536_SNP [dm3] 3R_27396814_SNP [dm6]	C	T	3.453e^-4	0.682	INTRON side
3R	23063703	3R_23063703_DEL [dm3] 3R_27237981_DEL [dm6]	GG	G	3.455e^-4	0.682	UTR_5_PRIME CG31064 INTRON CG31064	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10767258	3R_10767258_SNP [dm3] 3R_14941536_SNP [dm6]	G	T	3.458e^-4	0.682	INTERGENIC
2L	3611555	2L_3611555_DEL [dm3] 2L_3611555_DEL [dm6]	AC	T	3.458e^-4	0.682	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3611563	2L_3611563_DEL [dm3] 2L_3611563_DEL [dm6]	AGC	A	3.458e^-4	0.682	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	23222012	3R_23222012_SNP [dm3] 3R_27396290_SNP [dm6]	G	A	3.467e^-4	0.682	INTRON side
2R	5799810	2R_5799810_SNP [dm3] 2R_9912305_SNP [dm6]	C	A	3.467e^-4	0.682	INTRON Etf-QO	TF binding site mE1_TFBS_chinmo
2L	5446856	2L_5446856_INS [dm3] 2L_5446856_INS [dm6]	T	AA	3.468e^-4	0.682	INTERGENIC
3R	19066142	3R_19066142_SNP [dm3] 3R_23240420_SNP [dm6]	A	G	3.474e^-4	0.683	UPSTREAM CG4467 INTRON CG4467
3L	18019154	3L_18019154_SNP [dm3] 3L_18026054_SNP [dm6]	G	T	3.481e^-4	0.684	INTRON Eip75B
2L	9453171	2L_9453171_DEL [dm3] 2L_9453171_DEL [dm6]	CC	C	3.493e^-4	0.684	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1653732	X_1653732_SNP [dm3] X_1759699_SNP [dm6]	A	T	3.496e^-4	0.684	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26943204	3R_26943204_SNP [dm3] 3R_31117482_SNP [dm6]	C	G	3.498e^-4	0.684	INTERGENIC
2L	12831140	2L_12831140_SNP [dm3] 2L_12831140_SNP [dm6]	A	G	3.500e^-4	0.684	INTERGENIC
2R	5696531	2R_5696531_SNP [dm3] 2R_9809026_SNP [dm6]	A	G	3.500e^-4	0.684	INTERGENIC
3L	14162952	3L_14162952_SNP [dm3] 3L_14169852_SNP [dm6]	G	A	3.512e^-4	0.685	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	13184086	2R_13184086_SNP [dm3] 2R_17296581_SNP [dm6]	T	C	3.515e^-4	0.685	INTRON mbl
3R	6249190	3R_6249190_SNP [dm3] 3R_10423468_SNP [dm6]	G	A	3.518e^-4	0.685	INTERGENIC
3L	4806294	3L_4806294_SNP [dm3] 3L_4806294_SNP [dm6]	T	G	3.523e^-4	0.686	NON_SYNONYMOUS_CODING CG18808	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11035600	2R_11035600_SNP [dm3] 2R_15148095_SNP [dm6]	A	T	3.533e^-4	0.686	UPSTREAM CG8089 INTRON CG7544	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8081250	2L_8081250_SNP [dm3] 2L_8081250_SNP [dm6]	G	A	3.541e^-4	0.686	INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8081253	2L_8081253_SNP [dm3] 2L_8081253_SNP [dm6]	C	T	3.541e^-4	0.686	INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8081298	2L_8081298_SNP [dm3] 2L_8081298_SNP [dm6]	T	C	3.541e^-4	0.686	INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9316299	2L_9316299_SNP [dm3] 2L_9316299_SNP [dm6]	G	A	3.550e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	2372068	2L_2372068_DEL [dm3] 2L_2372068_DEL [dm6]	AA	A	3.557e^-4	0.686	UPSTREAM CG3597 DOWNSTREAM CG3609 INTERGENIC
3L	14097816	3L_14097816_SNP [dm3] 3L_14104716_SNP [dm6]	T	C	3.560e^-4	0.686	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9847432	2L_9847432_SNP [dm3] 2L_9847432_SNP [dm6]	A	T	3.572e^-4	0.686	UPSTREAM CR43766 INTRON nAChRalpha6
3R	15461960	3R_15461960_SNP [dm3] 3R_19636238_SNP [dm6]	A	T	3.576e^-4	0.686	DOWNSTREAM CG34138 INTRON subdued
X	5485775	X_5485775_DEL [dm3] X_5591742_DEL [dm6]	ATA	A	3.578e^-4	0.686	INTERGENIC
2L	3536824	2L_3536824_SNP [dm3] 2L_3536824_SNP [dm6]	A	T	3.578e^-4	0.686	INTERGENIC
2L	3520671	2L_3520671_SNP [dm3] 2L_3520671_SNP [dm6]	G	A	3.586e^-4	0.686	NON_SYNONYMOUS_CODING CG8851	TF binding site mE1_TFBS_cad
X	21862746	X_21862746_SNP [dm3] X_22460910_SNP [dm6]	T	C	3.588e^-4	0.686	INTRON CG14619	TF binding site mE1_TFBS_HSA
3L	18021503	3L_18021503_SNP [dm3] 3L_18028403_SNP [dm6]	C	T	3.594e^-4	0.686	INTRON Eip75B
3L	6568942	3L_6568942_INS [dm3] 3L_6575842_INS [dm6]	A	AA	3.598e^-4	0.686	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_kn
3R	19231933	3R_19231933_SNP [dm3] 3R_23406211_SNP [dm6]	T	C	3.602e^-4	0.686	SYNONYMOUS_CODING Ir94e
3R	15462287	3R_15462287_SNP [dm3] 3R_19636565_SNP [dm6]	C	T	3.607e^-4	0.686	NON_SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
2L	4312483	2L_4312483_SNP [dm3] 2L_4312483_SNP [dm6]	C	T	3.613e^-4	0.686	INTRON tutl
2L	8506609	2L_8506609_SNP [dm3] 2L_8506609_SNP [dm6]	G	A	3.614e^-4	0.686	INTRON Dh31
3L	8844674	3L_8844674_SNP [dm3] 3L_8851574_SNP [dm6]	A	G	3.625e^-4	0.686	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	8880121	3L_8880121_SNP [dm3] 3L_8887021_SNP [dm6]	A	G	3.626e^-4	0.686	INTRON dally
2R	3744188	2R_3744188_SNP [dm3] 2R_7856683_SNP [dm6]	A	T	3.627e^-4	0.686	INTRON Dgk
X	10287888	X_10287888_SNP [dm3] X_10393855_SNP [dm6]	G	T	3.627e^-4	0.686	INTRON flw
3L	11401537	3L_11401537_SNP [dm3] 3L_11408437_SNP [dm6]	A	G	3.627e^-4	0.686	INTERGENIC
X	4862997	X_4862997_SNP [dm3] X_4968964_SNP [dm6]	C	G	3.627e^-4	0.686	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8509116	2L_8509116_SNP [dm3] 2L_8509116_SNP [dm6]	C	T	3.629e^-4	0.686	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
2R	2634681	2R_2634681_SNP [dm3] 2R_6747176_SNP [dm6]	G	A	3.633e^-4	0.686	INTRON CG3267
3R	9280718	3R_9280718_SNP [dm3] 3R_13454996_SNP [dm6]	T	G	3.637e^-4	0.686	DOWNSTREAM CR17025 INTRON CG14372
X	17686354	X_17686354_DEL [dm3] X_17792321_DEL [dm6]	AGACAAGGTA	A	3.638e^-4	0.686	INTRON OdsH
2R	13916045	2R_13916045_SNP [dm3] 2R_18028540_SNP [dm6]	A	T	3.655e^-4	0.686	INTERGENIC
2L	1162272	2L_1162272_SNP [dm3] 2L_1162272_SNP [dm6]	A	G	3.659e^-4	0.686	INTRON CG5080	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	10704739	2L_10704739_SNP [dm3] 2L_10704739_SNP [dm6]	C	G	3.661e^-4	0.686	SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5917790	3L_5917790_SNP [dm3] 3L_5924690_SNP [dm6]	T	A	3.662e^-4	0.686	INTRON Vap-33B
3L	12403841	3L_12403841_SNP [dm3] 3L_12410741_SNP [dm6]	G	T	3.666e^-4	0.686	INTRON CG32103
2R	13188611	2R_13188611_SNP [dm3] 2R_17301106_SNP [dm6]	C	T	3.670e^-4	0.686	INTRON mbl
3L	17636035	3L_17636035_SNP [dm3] 3L_17642935_SNP [dm6]	C	A	3.673e^-4	0.686	INTRON Pep	TF binding site BDTNP1_TFBS_dl

Missing results

By genomic position
Variant impact
Gene name

Cuticul_x_C22_1_l3 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results