DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.859e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.006882

Kruskal-Wallis test

Covariate	χ²	p-value
wolba	2.7981	0.0944
In_2L_t	9.4831	0.0087
In_3R_Mo	4.997	0.0822

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2160 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	1.709e^-7	0.187	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5735501	2R_5735501_SNP [dm3] 2R_9847996_SNP [dm6]	T	A	2.296e^-7	0.187	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	3.629e^-7	0.187	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	4.758e^-7	0.187	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2R	5735181	2R_5735181_SNP [dm3] 2R_9847676_SNP [dm6]	T	G	6.341e^-7	0.187	UPSTREAM CG1671 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	6.362e^-7	0.187	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	7.506e^-7	0.187	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2R	5760716	2R_5760716_SNP [dm3] 2R_9873211_SNP [dm6]	C	T	1.008e^-6	0.187	INTRON cbx & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_sens
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	1.030e^-6	0.187	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	1.030e^-6	0.187	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	1.097e^-6	0.187	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	1.312e^-6	0.194	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2R	5735512	2R_5735512_SNP [dm3] 2R_9848007_SNP [dm6]	C	T	1.401e^-6	0.194	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	5735502	2R_5735502_SNP [dm3] 2R_9847997_SNP [dm6]	C	A	1.450e^-6	0.194	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	5734458	2R_5734458_SNP [dm3] 2R_9846953_SNP [dm6]	T	G	1.777e^-6	0.222	UPSTREAM Orc6 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	5741733	2R_5741733_SNP [dm3] 2R_9854228_SNP [dm6]	A	G	2.030e^-6	0.232	INTRON CG1516	TF binding site mE1_TFBS_cad
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	2.102e^-6	0.232	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5763531	2R_5763531_SNP [dm3] 2R_9876026_SNP [dm6]	C	T	2.325e^-6	0.234	SYNONYMOUS_CODING CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	2.429e^-6	0.234	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5735690	2R_5735690_SNP [dm3] 2R_9848185_SNP [dm6]	A	G	2.493e^-6	0.234	UPSTREAM Prosalpha7 INTRON CG1671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	2.710e^-6	0.242	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	18261619	2R_18261619_SNP [dm3] 2R_22374114_SNP [dm6]	T	A	2.999e^-6	0.245	UPSTREAM Rtf1 INTRON CR44759	TF binding site BDTNP1_TFBS_dl
2R	5784919	2R_5784919_SNP [dm3] 2R_9897414_SNP [dm6]	A	C	3.007e^-6	0.245	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	3.139e^-6	0.245	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	3.721e^-6	0.252	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	3.776e^-6	0.252	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15397459	2R_15397459_SNP [dm3] 2R_19509954_SNP [dm6]	T	C	3.888e^-6	0.252	NON_SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
2R	5777267	2R_5777267_SNP [dm3] 2R_9889762_SNP [dm6]	G	A	3.982e^-6	0.252	UPSTREAM CG30008 DOWNSTREAM CG12923 INTRON CG1513
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	4.184e^-6	0.252	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	4.210e^-6	0.252	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5785120	2R_5785120_SNP [dm3] 2R_9897615_SNP [dm6]	C	T	4.293e^-6	0.252	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	4.394e^-6	0.252	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5762331	2R_5762331_SNP [dm3] 2R_9874826_SNP [dm6]	C	G	4.538e^-6	0.252	UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	4.588e^-6	0.252	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5731332	2R_5731332_SNP [dm3] 2R_9843827_SNP [dm6]	C	T	4.790e^-6	0.252	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	2496040	2L_2496040_SNP [dm3] 2L_2496040_SNP [dm6]	G	T	4.844e^-6	0.252	INTRON oaf
2L	8530244	2L_8530244_SNP [dm3] 2L_8530244_SNP [dm6]	G	A	5.184e^-6	0.252	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	18015452	2R_18015452_SNP [dm3] 2R_22127947_SNP [dm6]	A	G	5.363e^-6	0.252	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad
3L	2143471	3L_2143471_SNP [dm3] 3L_2143471_SNP [dm6]	C	T	5.667e^-6	0.252	INTRON zormin
2R	5762919	2R_5762919_SNP [dm3] 2R_9875414_SNP [dm6]	G	A	5.766e^-6	0.252	UTR_5_PRIME CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB INTRON CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5785084	2R_5785084_SNP [dm3] 2R_9897579_SNP [dm6]	C	A	5.848e^-6	0.252	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	5.960e^-6	0.252	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
3L	11862232	3L_11862232_SNP [dm3] 3L_11869132_SNP [dm6]	G	A	6.384e^-6	0.252	INTRON CG44837
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	6.402e^-6	0.252	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8539516	2L_8539516_SNP [dm3] 2L_8539516_SNP [dm6]	C	T	6.403e^-6	0.252	INTRON CG17834
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	6.501e^-6	0.252	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3255154	3L_3255154_INS [dm3] 3L_3255154_INS [dm6]	C	CCC	6.512e^-6	0.252	DOWNSTREAM CR43626 INTERGENIC
2L	4915900	2L_4915900_SNP [dm3] 2L_4915900_SNP [dm6]	A	T	6.583e^-6	0.252	UPSTREAM hoe1 INTRON hoe1
2L	4915920	2L_4915920_SNP [dm3] 2L_4915920_SNP [dm6]	T	C	6.583e^-6	0.252	UPSTREAM hoe1 INTRON hoe1
2L	7171871	2L_7171871_DEL [dm3] 2L_7171871_DEL [dm6]	AGTAA	A	6.844e^-6	0.257	INTERGENIC
2L	7171894	2L_7171894_SNP [dm3] 2L_7171894_SNP [dm6]	C	A	7.076e^-6	0.26	INTERGENIC
2R	5736012	2R_5736012_SNP [dm3] 2R_9848507_SNP [dm6]	G	A	7.510e^-6	0.266	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5783798	2R_5783798_SNP [dm3] 2R_9896293_SNP [dm6]	G	T	7.530e^-6	0.266	NON_SYNONYMOUS_CODING CG30007
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	7.706e^-6	0.266	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	7.788e^-6	0.266	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5731874	2R_5731874_SNP [dm3] 2R_9844369_SNP [dm6]	C	A	7.936e^-6	0.266	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	8.101e^-6	0.267	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9087414	3L_9087414_SNP [dm3] 3L_9094314_SNP [dm6]	C	G	8.754e^-6	0.28	INTRON CG32032
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	8.814e^-6	0.28	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	9.446e^-6	0.293	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2R	6063995	2R_6063995_SNP [dm3] 2R_10176490_SNP [dm6]	C	T	9.545e^-6	0.293	INTRON KCNQ
2L	3028667	2L_3028667_SNP [dm3] 2L_3028667_SNP [dm6]	T	G	9.757e^-6	0.294	NON_SYNONYMOUS_CODING CG3605 UPSTREAM CG17219	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	5785090	2R_5785090_SNP [dm3] 2R_9897585_SNP [dm6]	T	C	9.879e^-6	0.294	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5738442	2R_5738442_SNP [dm3] 2R_9850937_SNP [dm6]	A	G	1.055e^-5	0.308	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	1.068e^-5	0.308	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
3L	9621632	3L_9621632_SNP [dm3] 3L_9628532_SNP [dm6]	G	A	1.187e^-5	0.332	SYNONYMOUS_CODING Or67b UPSTREAM CG8336
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	1.196e^-5	0.332	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	1.204e^-5	0.332	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	1.245e^-5	0.338	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2R	5781559	2R_5781559_SNP [dm3] 2R_9894054_SNP [dm6]	C	T	1.318e^-5	0.353	NON_SYNONYMOUS_CODING CG30007
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	1.340e^-5	0.354	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	1.382e^-5	0.36	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5783795	2R_5783795_SNP [dm3] 2R_9896290_SNP [dm6]	C	A	1.428e^-5	0.363	NON_SYNONYMOUS_CODING CG30007
2R	5783305	2R_5783305_SNP [dm3] 2R_9895800_SNP [dm6]	C	A	1.453e^-5	0.363	NON_SYNONYMOUS_CODING CG30007
2R	1403693	2R_1403693_SNP [dm3] 2R_5516188_SNP [dm6]	C	A	1.458e^-5	0.363	INTRON CG30438
2R	18015420	2R_18015420_SNP [dm3] 2R_22127915_SNP [dm6]	T	C	1.472e^-5	0.363	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D
2R	15397471	2R_15397471_SNP [dm3] 2R_19509966_SNP [dm6]	A	C	1.527e^-5	0.365	SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
2R	5871724	2R_5871724_SNP [dm3] 2R_9984219_SNP [dm6]	G	T	1.548e^-5	0.365	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2141753	3L_2141753_SNP [dm3] 3L_2141753_SNP [dm6]	C	G	1.573e^-5	0.365	INTRON zormin	TF binding site mE1_TFBS_inv
2R	5755314	2R_5755314_SNP [dm3] 2R_9867809_SNP [dm6]	A	G	1.579e^-5	0.365	UPSTREAM CR45138 INTRON cbx
3L	2141868	3L_2141868_SNP [dm3] 3L_2141868_SNP [dm6]	C	T	1.600e^-5	0.365	INTRON zormin	TF binding site mE1_TFBS_inv
2R	5780578	2R_5780578_SNP [dm3] 2R_9893073_SNP [dm6]	T	A	1.607e^-5	0.365	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
3L	2141763	3L_2141763_SNP [dm3] 3L_2141763_SNP [dm6]	G	T	1.638e^-5	0.365	INTRON zormin	TF binding site mE1_TFBS_inv
2R	18260231	2R_18260231_SNP [dm3] 2R_22372726_SNP [dm6]	A	G	1.693e^-5	0.365	DOWNSTREAM CR44759 INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	5550214	2L_5550214_SNP [dm3] 2L_5550214_SNP [dm6]	G	A	1.702e^-5	0.365	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4911521	2L_4911521_DEL [dm3] 2L_4911521_DEL [dm6]	TA	C	1.723e^-5	0.365	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	1.755e^-5	0.365	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5735754	2R_5735754_SNP [dm3] 2R_9848249_SNP [dm6]	C	T	1.762e^-5	0.365	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	5780076	2R_5780076_SNP [dm3] 2R_9892571_SNP [dm6]	A	G	1.781e^-5	0.365	UPSTREAM CG1513 INTRON CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13184459	2R_13184459_SNP [dm3] 2R_17296954_SNP [dm6]	G	C	1.811e^-5	0.365	INTRON mbl
3L	7089850	3L_7089850_SNP [dm3] 3L_7096750_SNP [dm6]	C	A	1.821e^-5	0.365	INTRON form3
3L	9577924	3L_9577924_SNP [dm3] 3L_9584824_SNP [dm6]	T	C	1.848e^-5	0.365	INTRON CG42673
2L	17068976	2L_17068976_INS [dm3] 2L_17068976_INS [dm6]	A	AGGATGGCGTCGCTATCTCG...	1.855e^-5	0.365	INTERGENIC
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	1.862e^-5	0.365	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	5742476	2R_5742476_SNP [dm3] 2R_9854971_SNP [dm6]	T	C	1.878e^-5	0.365	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3297684	2L_3297684_SNP [dm3] 2L_3297684_SNP [dm6]	T	C	1.885e^-5	0.365	INTRON CG9663
2R	5781414	2R_5781414_SNP [dm3] 2R_9893909_SNP [dm6]	T	A	1.904e^-5	0.365	INTRON CG30007
2R	5779845	2R_5779845_SNP [dm3] 2R_9892340_SNP [dm6]	A	T	1.908e^-5	0.365	NON_SYNONYMOUS_CODING CG30007 UPSTREAM CG1513	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8530229	2L_8530229_SNP [dm3] 2L_8530229_SNP [dm6]	G	A	1.951e^-5	0.37	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	5738550	2R_5738550_SNP [dm3] 2R_9851045_SNP [dm6]	G	A	1.972e^-5	0.37	UTR_3_PRIME CG1516 DOWNSTREAM CG1671

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Missing results

By genomic position
Variant impact
Gene name

Cuticul_x_C22_1_l2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results