DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.859e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.006882

Kruskal-Wallis test

Covariate	χ²	p-value
wolba	2.7981	0.0944
In_2L_t	9.4831	0.0087
In_3R_Mo	4.997	0.0822

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2160 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	1.709e^-7	0.187	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5735501	2R_5735501_SNP [dm3] 2R_9847996_SNP [dm6]	T	A	2.296e^-7	0.187	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	3.629e^-7	0.187	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	4.758e^-7	0.187	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2R	5735181	2R_5735181_SNP [dm3] 2R_9847676_SNP [dm6]	T	G	6.341e^-7	0.187	UPSTREAM CG1671 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	6.362e^-7	0.187	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	7.506e^-7	0.187	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2R	5760716	2R_5760716_SNP [dm3] 2R_9873211_SNP [dm6]	C	T	1.008e^-6	0.187	INTRON cbx & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_sens
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	1.030e^-6	0.187	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	1.030e^-6	0.187	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	1.097e^-6	0.187	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	1.312e^-6	0.194	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2R	5735512	2R_5735512_SNP [dm3] 2R_9848007_SNP [dm6]	C	T	1.401e^-6	0.194	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	5735502	2R_5735502_SNP [dm3] 2R_9847997_SNP [dm6]	C	A	1.450e^-6	0.194	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	5734458	2R_5734458_SNP [dm3] 2R_9846953_SNP [dm6]	T	G	1.777e^-6	0.222	UPSTREAM Orc6 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	5741733	2R_5741733_SNP [dm3] 2R_9854228_SNP [dm6]	A	G	2.030e^-6	0.232	INTRON CG1516	TF binding site mE1_TFBS_cad
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	2.102e^-6	0.232	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5763531	2R_5763531_SNP [dm3] 2R_9876026_SNP [dm6]	C	T	2.325e^-6	0.234	SYNONYMOUS_CODING CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	2.429e^-6	0.234	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5735690	2R_5735690_SNP [dm3] 2R_9848185_SNP [dm6]	A	G	2.493e^-6	0.234	UPSTREAM Prosalpha7 INTRON CG1671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	2.710e^-6	0.242	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	18261619	2R_18261619_SNP [dm3] 2R_22374114_SNP [dm6]	T	A	2.999e^-6	0.245	UPSTREAM Rtf1 INTRON CR44759	TF binding site BDTNP1_TFBS_dl
2R	5784919	2R_5784919_SNP [dm3] 2R_9897414_SNP [dm6]	A	C	3.007e^-6	0.245	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	3.139e^-6	0.245	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	3.721e^-6	0.252	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	3.776e^-6	0.252	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15397459	2R_15397459_SNP [dm3] 2R_19509954_SNP [dm6]	T	C	3.888e^-6	0.252	NON_SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
2R	5777267	2R_5777267_SNP [dm3] 2R_9889762_SNP [dm6]	G	A	3.982e^-6	0.252	UPSTREAM CG30008 DOWNSTREAM CG12923 INTRON CG1513
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	4.184e^-6	0.252	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	4.210e^-6	0.252	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5785120	2R_5785120_SNP [dm3] 2R_9897615_SNP [dm6]	C	T	4.293e^-6	0.252	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	4.394e^-6	0.252	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5762331	2R_5762331_SNP [dm3] 2R_9874826_SNP [dm6]	C	G	4.538e^-6	0.252	UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	4.588e^-6	0.252	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5731332	2R_5731332_SNP [dm3] 2R_9843827_SNP [dm6]	C	T	4.790e^-6	0.252	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	2496040	2L_2496040_SNP [dm3] 2L_2496040_SNP [dm6]	G	T	4.844e^-6	0.252	INTRON oaf
2L	8530244	2L_8530244_SNP [dm3] 2L_8530244_SNP [dm6]	G	A	5.184e^-6	0.252	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	18015452	2R_18015452_SNP [dm3] 2R_22127947_SNP [dm6]	A	G	5.363e^-6	0.252	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad
3L	2143471	3L_2143471_SNP [dm3] 3L_2143471_SNP [dm6]	C	T	5.667e^-6	0.252	INTRON zormin
2R	5762919	2R_5762919_SNP [dm3] 2R_9875414_SNP [dm6]	G	A	5.766e^-6	0.252	UTR_5_PRIME CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB INTRON CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5785084	2R_5785084_SNP [dm3] 2R_9897579_SNP [dm6]	C	A	5.848e^-6	0.252	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	5.960e^-6	0.252	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
3L	11862232	3L_11862232_SNP [dm3] 3L_11869132_SNP [dm6]	G	A	6.384e^-6	0.252	INTRON CG44837
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	6.402e^-6	0.252	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8539516	2L_8539516_SNP [dm3] 2L_8539516_SNP [dm6]	C	T	6.403e^-6	0.252	INTRON CG17834
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	6.501e^-6	0.252	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3255154	3L_3255154_INS [dm3] 3L_3255154_INS [dm6]	C	CCC	6.512e^-6	0.252	DOWNSTREAM CR43626 INTERGENIC
2L	4915900	2L_4915900_SNP [dm3] 2L_4915900_SNP [dm6]	A	T	6.583e^-6	0.252	UPSTREAM hoe1 INTRON hoe1
2L	4915920	2L_4915920_SNP [dm3] 2L_4915920_SNP [dm6]	T	C	6.583e^-6	0.252	UPSTREAM hoe1 INTRON hoe1
2L	7171871	2L_7171871_DEL [dm3] 2L_7171871_DEL [dm6]	AGTAA	A	6.844e^-6	0.257	INTERGENIC
2L	7171894	2L_7171894_SNP [dm3] 2L_7171894_SNP [dm6]	C	A	7.076e^-6	0.26	INTERGENIC
2R	5736012	2R_5736012_SNP [dm3] 2R_9848507_SNP [dm6]	G	A	7.510e^-6	0.266	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5783798	2R_5783798_SNP [dm3] 2R_9896293_SNP [dm6]	G	T	7.530e^-6	0.266	NON_SYNONYMOUS_CODING CG30007
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	7.706e^-6	0.266	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	7.788e^-6	0.266	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5731874	2R_5731874_SNP [dm3] 2R_9844369_SNP [dm6]	C	A	7.936e^-6	0.266	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	8.101e^-6	0.267	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9087414	3L_9087414_SNP [dm3] 3L_9094314_SNP [dm6]	C	G	8.754e^-6	0.28	INTRON CG32032
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	8.814e^-6	0.28	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	9.446e^-6	0.293	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2R	6063995	2R_6063995_SNP [dm3] 2R_10176490_SNP [dm6]	C	T	9.545e^-6	0.293	INTRON KCNQ
2L	3028667	2L_3028667_SNP [dm3] 2L_3028667_SNP [dm6]	T	G	9.757e^-6	0.294	NON_SYNONYMOUS_CODING CG3605 UPSTREAM CG17219	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	5785090	2R_5785090_SNP [dm3] 2R_9897585_SNP [dm6]	T	C	9.879e^-6	0.294	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5738442	2R_5738442_SNP [dm3] 2R_9850937_SNP [dm6]	A	G	1.055e^-5	0.308	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	1.068e^-5	0.308	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
3L	9621632	3L_9621632_SNP [dm3] 3L_9628532_SNP [dm6]	G	A	1.187e^-5	0.332	SYNONYMOUS_CODING Or67b UPSTREAM CG8336
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	1.196e^-5	0.332	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	1.204e^-5	0.332	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	1.245e^-5	0.338	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2R	5781559	2R_5781559_SNP [dm3] 2R_9894054_SNP [dm6]	C	T	1.318e^-5	0.353	NON_SYNONYMOUS_CODING CG30007
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	1.340e^-5	0.354	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	1.382e^-5	0.36	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5783795	2R_5783795_SNP [dm3] 2R_9896290_SNP [dm6]	C	A	1.428e^-5	0.363	NON_SYNONYMOUS_CODING CG30007
2R	5783305	2R_5783305_SNP [dm3] 2R_9895800_SNP [dm6]	C	A	1.453e^-5	0.363	NON_SYNONYMOUS_CODING CG30007
2R	1403693	2R_1403693_SNP [dm3] 2R_5516188_SNP [dm6]	C	A	1.458e^-5	0.363	INTRON CG30438
2R	18015420	2R_18015420_SNP [dm3] 2R_22127915_SNP [dm6]	T	C	1.472e^-5	0.363	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D
2R	15397471	2R_15397471_SNP [dm3] 2R_19509966_SNP [dm6]	A	C	1.527e^-5	0.365	SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
2R	5871724	2R_5871724_SNP [dm3] 2R_9984219_SNP [dm6]	G	T	1.548e^-5	0.365	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2141753	3L_2141753_SNP [dm3] 3L_2141753_SNP [dm6]	C	G	1.573e^-5	0.365	INTRON zormin	TF binding site mE1_TFBS_inv
2R	5755314	2R_5755314_SNP [dm3] 2R_9867809_SNP [dm6]	A	G	1.579e^-5	0.365	UPSTREAM CR45138 INTRON cbx
3L	2141868	3L_2141868_SNP [dm3] 3L_2141868_SNP [dm6]	C	T	1.600e^-5	0.365	INTRON zormin	TF binding site mE1_TFBS_inv
2R	5780578	2R_5780578_SNP [dm3] 2R_9893073_SNP [dm6]	T	A	1.607e^-5	0.365	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
3L	2141763	3L_2141763_SNP [dm3] 3L_2141763_SNP [dm6]	G	T	1.638e^-5	0.365	INTRON zormin	TF binding site mE1_TFBS_inv
2R	18260231	2R_18260231_SNP [dm3] 2R_22372726_SNP [dm6]	A	G	1.693e^-5	0.365	DOWNSTREAM CR44759 INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	5550214	2L_5550214_SNP [dm3] 2L_5550214_SNP [dm6]	G	A	1.702e^-5	0.365	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4911521	2L_4911521_DEL [dm3] 2L_4911521_DEL [dm6]	TA	C	1.723e^-5	0.365	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	1.755e^-5	0.365	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5735754	2R_5735754_SNP [dm3] 2R_9848249_SNP [dm6]	C	T	1.762e^-5	0.365	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	5780076	2R_5780076_SNP [dm3] 2R_9892571_SNP [dm6]	A	G	1.781e^-5	0.365	UPSTREAM CG1513 INTRON CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13184459	2R_13184459_SNP [dm3] 2R_17296954_SNP [dm6]	G	C	1.811e^-5	0.365	INTRON mbl
3L	7089850	3L_7089850_SNP [dm3] 3L_7096750_SNP [dm6]	C	A	1.821e^-5	0.365	INTRON form3
3L	9577924	3L_9577924_SNP [dm3] 3L_9584824_SNP [dm6]	T	C	1.848e^-5	0.365	INTRON CG42673
2L	17068976	2L_17068976_INS [dm3] 2L_17068976_INS [dm6]	A	AGGATGGCGTCGCTATCTCG...	1.855e^-5	0.365	INTERGENIC
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	1.862e^-5	0.365	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	5742476	2R_5742476_SNP [dm3] 2R_9854971_SNP [dm6]	T	C	1.878e^-5	0.365	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3297684	2L_3297684_SNP [dm3] 2L_3297684_SNP [dm6]	T	C	1.885e^-5	0.365	INTRON CG9663
2R	5781414	2R_5781414_SNP [dm3] 2R_9893909_SNP [dm6]	T	A	1.904e^-5	0.365	INTRON CG30007
2R	5779845	2R_5779845_SNP [dm3] 2R_9892340_SNP [dm6]	A	T	1.908e^-5	0.365	NON_SYNONYMOUS_CODING CG30007 UPSTREAM CG1513	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8530229	2L_8530229_SNP [dm3] 2L_8530229_SNP [dm6]	G	A	1.951e^-5	0.37	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	5738550	2R_5738550_SNP [dm3] 2R_9851045_SNP [dm6]	G	A	1.972e^-5	0.37	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
2L	9316308	2L_9316308_SNP [dm3] 2L_9316308_SNP [dm6]	T	C	2.063e^-5	0.378	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	587282	2L_587282_SNP [dm3] 2L_587282_SNP [dm6]	C	A	2.074e^-5	0.378	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18260132	2R_18260132_SNP [dm3] 2R_22372627_SNP [dm6]	A	C	2.087e^-5	0.378	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	2.116e^-5	0.378	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6757533	3L_6757533_SNP [dm3] 3L_6764433_SNP [dm6]	G	A	2.149e^-5	0.378	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	1630207	2L_1630207_SNP [dm3] 2L_1630207_SNP [dm6]	C	G	2.185e^-5	0.378	INTERGENIC
2L	1630218	2L_1630218_SNP [dm3] 2L_1630218_SNP [dm6]	C	A	2.185e^-5	0.378	INTERGENIC
2R	5778612	2R_5778612_SNP [dm3] 2R_9891107_SNP [dm6]	G	A	2.190e^-5	0.378	UTR_3_PRIME CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2L	3037800	2L_3037800_SNP [dm3] 2L_3037800_SNP [dm6]	G	T	2.196e^-5	0.378	SYNONYMOUS_CODING CG17260 UPSTREAM CG17259	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	5749039	2R_5749039_SNP [dm3] 2R_9861534_SNP [dm6]	T	G	2.280e^-5	0.389	UTR_5_PRIME CG1516 UPSTREAM CG1516 EXON CR44293	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12257019	2L_12257019_SNP [dm3] 2L_12257019_SNP [dm6]	A	G	2.311e^-5	0.39	INTRON aret
2L	12460913	2L_12460913_SNP [dm3] 2L_12460913_SNP [dm6]	A	G	2.347e^-5	0.393	UTR_5_PRIME bun UPSTREAM mir-967 INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13184445	2R_13184445_SNP [dm3] 2R_17296940_SNP [dm6]	T	G	2.367e^-5	0.393	INTRON mbl
2L	2501012	2L_2501012_SNP [dm3] 2L_2501012_SNP [dm6]	A	C	2.406e^-5	0.396	INTERGENIC
X	2354635	X_2354635_SNP [dm3] X_2460602_SNP [dm6]	G	A	2.588e^-5	0.417	INTRON boi
3R	10767207	3R_10767207_SNP [dm3] 3R_14941485_SNP [dm6]	G	A	2.635e^-5	0.417	INTERGENIC
2L	16709978	2L_16709978_DEL [dm3] 2L_16709978_DEL [dm6]	GCTAGCACGGCAGATCTT...	G	2.648e^-5	0.417	INTRON CG31808
2L	3029103	2L_3029103_SNP [dm3] 2L_3029103_SNP [dm6]	T	A	2.699e^-5	0.417	UTR_5_PRIME CG3605 UPSTREAM CG17219	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	2.726e^-5	0.417	INTRON 4EHP
2L	2867596	2L_2867596_SNP [dm3] 2L_2867596_SNP [dm6]	T	C	2.727e^-5	0.417	SYNONYMOUS_CODING CG2991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3174769	3L_3174769_SNP [dm3] 3L_3174769_SNP [dm6]	G	A	2.733e^-5	0.417	SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8523105	2L_8523105_SNP [dm3] 2L_8523105_SNP [dm6]	G	C	2.738e^-5	0.417	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8523133	2L_8523133_SNP [dm3] 2L_8523133_SNP [dm6]	G	A	2.738e^-5	0.417	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	4912425	2L_4912425_SNP [dm3] 2L_4912425_SNP [dm6]	T	A	2.764e^-5	0.418	INTRON hoe1
2R	10814124	2R_10814124_SNP [dm3] 2R_14926619_SNP [dm6]	C	T	2.789e^-5	0.419	UTR_5_PRIME CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4912312	2L_4912312_SNP [dm3] 2L_4912312_SNP [dm6]	G	A	2.860e^-5	0.419	INTRON hoe1
2L	4916065	2L_4916065_SNP [dm3] 2L_4916065_SNP [dm6]	G	T	2.869e^-5	0.419	UPSTREAM hoe1 INTRON hoe1
2L	2939007	2L_2939007_SNP [dm3] 2L_2939007_SNP [dm6]	C	A	2.879e^-5	0.419	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	4911991	2L_4911991_SNP [dm3] 2L_4911991_SNP [dm6]	G	T	2.879e^-5	0.419	INTRON hoe1	TF binding site mE1_TFBS_chinmo
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	2.939e^-5	0.424	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5732318	2R_5732318_SNP [dm3] 2R_9844813_SNP [dm6]	A	G	2.974e^-5	0.425	SYNONYMOUS_CODING CG1667 DOWNSTREAM Orc6
X	9041241	X_9041241_SNP [dm3] X_9147208_SNP [dm6]	G	C	3.010e^-5	0.425	NON_SYNONYMOUS_CODING CG7065 DOWNSTREAM fh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8482186	2R_8482186_SNP [dm3] 2R_12594681_SNP [dm6]	C	T	3.012e^-5	0.425	UPSTREAM CR45279 INTRON Amph EXON CR43909	TF binding site BDTNP1_TFBS_dl
2L	3029250	2L_3029250_SNP [dm3] 2L_3029250_SNP [dm6]	C	T	3.089e^-5	0.432	UPSTREAM CG17219 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2R	9965535	2R_9965535_SNP [dm3] 2R_14078030_SNP [dm6]	A	T	3.250e^-5	0.448	INTRON Prosap
2L	3037368	2L_3037368_SNP [dm3] 2L_3037368_SNP [dm6]	A	T	3.250e^-5	0.448	UTR_5_PRIME CG17259 UPSTREAM CG17260 & 1 other INTRON CG17260	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3506142	3L_3506142_SNP [dm3] 3L_3506142_SNP [dm6]	A	G	3.300e^-5	0.452	SYNONYMOUS_CODING CG42324 DOWNSTREAM CG42324	TF binding site mE1_TFBS_cad
2L	2612212	2L_2612212_SNP [dm3] 2L_2612212_SNP [dm6]	A	T	3.372e^-5	0.458	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5732852	2R_5732852_SNP [dm3] 2R_9845347_SNP [dm6]	A	G	3.411e^-5	0.46	UTR_3_PRIME CG1667 DOWNSTREAM Orc6
2R	5733815	2R_5733815_SNP [dm3] 2R_9846310_SNP [dm6]	A	C	3.453e^-5	0.461	DOWNSTREAM CG1667 & 1 other INTRON Orc6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	16646724	2L_16646724_SNP [dm3] 2L_16646724_SNP [dm6]	C	G	3.465e^-5	0.461	INTRON CG42389
2R	6986972	2R_6986972_SNP [dm3] 2R_11099467_SNP [dm6]	A	G	3.488e^-5	0.461	INTRON luna
3L	14350689	3L_14350689_SNP [dm3] 3L_14357589_SNP [dm6]	G	A	3.545e^-5	0.464	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23979214	3R_23979214_SNP [dm3] 3R_28153492_SNP [dm6]	C	T	3.559e^-5	0.464	INTRON CG34354
2L	1575452	2L_1575452_SNP [dm3] 2L_1575452_SNP [dm6]	A	G	3.674e^-5	0.475	INTRON haf
2R	5781437	2R_5781437_SNP [dm3] 2R_9893932_SNP [dm6]	A	C	3.713e^-5	0.477	INTRON CG30007
2L	1863294	2L_1863294_DEL [dm3] 2L_1863294_DEL [dm6]	TT	T	3.897e^-5	0.497	INTRON CG31663
2R	14183526	2R_14183526_SNP [dm3] 2R_18296021_SNP [dm6]	C	T	3.939e^-5	0.498	DOWNSTREAM CG18536 INTRON sbb & 1 other
2R	5733928	2R_5733928_SNP [dm3] 2R_9846423_SNP [dm6]	C	A	3.958e^-5	0.498	START_GAINED Orc6 UTR_5_PRIME Orc6 DOWNSTREAM CG1667 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	2439991	3L_2439991_DEL [dm3] 3L_2439991_DEL [dm6]	CAC	C	4.072e^-5	0.505	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	3867801	3L_3867801_SNP [dm3] 3L_3867801_SNP [dm6]	C	A	4.081e^-5	0.505	INTERGENIC
2L	3029036	2L_3029036_SNP [dm3] 2L_3029036_SNP [dm6]	T	C	4.119e^-5	0.505	UPSTREAM CG17219 INTRON CG3605	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2R	5777768	2R_5777768_DEL [dm3] 2R_9890263_DEL [dm6]	AGACCTTTAA	A	4.140e^-5	0.505	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
2R	14956255	2R_14956255_SNP [dm3] 2R_19068750_SNP [dm6]	A	T	4.143e^-5	0.505	INTRON 5-HT1A
2R	18004968	2R_18004968_SNP [dm3] 2R_22117463_SNP [dm6]	A	C	4.219e^-5	0.51	INTRON Vrp1
2L	17068958	2L_17068958_SNP [dm3] 2L_17068958_SNP [dm6]	C	G	4.243e^-5	0.51	INTERGENIC
2R	5720380	2R_5720380_SNP [dm3] 2R_9832875_SNP [dm6]	G	T	4.265e^-5	0.51	INTRON hebe
2R	5867623	2R_5867623_SNP [dm3] 2R_9980118_SNP [dm6]	A	C	4.296e^-5	0.51	SYNONYMOUS_CODING eve UPSTREAM CR43948	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5213595	X_5213595_SNP [dm3] X_5319562_SNP [dm6]	G	A	4.360e^-5	0.514	SYNONYMOUS_CODING Rnp4F DOWNSTREAM Sas10	TF binding site mE1_TFBS_chinmo
2R	18015363	2R_18015363_SNP [dm3] 2R_22127858_SNP [dm6]	T	A	4.403e^-5	0.516	NON_SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	10684281	3R_10684281_SNP [dm3] 3R_14858559_SNP [dm6]	T	C	4.492e^-5	0.52	INTRON btsz
2L	8530204	2L_8530204_SNP [dm3] 2L_8530204_SNP [dm6]	A	T	4.510e^-5	0.52	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	18398957	2L_18398957_SNP [dm3] 2L_18398957_SNP [dm6]	C	A	4.533e^-5	0.52	INTERGENIC
2L	587283	2L_587283_SNP [dm3] 2L_587283_SNP [dm6]	C	A	4.547e^-5	0.52	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5833750	2R_5833750_SNP [dm3] 2R_9946245_SNP [dm6]	A	C	4.592e^-5	0.522	INTRON Mef2
3L	8634449	3L_8634449_SNP [dm3] 3L_8641349_SNP [dm6]	C	T	4.645e^-5	0.522	INTRON Cpr66D
X	17333204	X_17333204_SNP [dm3] X_17439171_SNP [dm6]	T	C	4.645e^-5	0.522	INTRON CG12994
2R	7799416	2R_7799416_SNP [dm3] 2R_11911911_SNP [dm6]	C	T	4.710e^-5	0.524	INTRON CG13183
2R	18260119	2R_18260119_SNP [dm3] 2R_22372614_SNP [dm6]	T	C	4.719e^-5	0.524	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	4.752e^-5	0.524	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	18015914	2R_18015914_SNP [dm3] 2R_22128409_SNP [dm6]	C	T	4.799e^-5	0.526	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	4.877e^-5	0.532	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15458068	2L_15458068_SNP [dm3] 2L_15458068_SNP [dm6]	T	G	4.903e^-5	0.532	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	14956293	2R_14956293_SNP [dm3] 2R_19068788_SNP [dm6]	G	A	5.033e^-5	0.54	INTRON 5-HT1A
2L	3029528	2L_3029528_DEL [dm3] 2L_3029528_DEL [dm6]	ATCA	A	5.036e^-5	0.54	UPSTREAM CG3605 DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
2R	17604614	2R_17604614_DEL [dm3] 2R_21717109_DEL [dm6]	AGAGATTA	A	5.230e^-5	0.557	UTR_3_PRIME Tango11 UPSTREAM CG30398 DOWNSTREAM HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	5763605	2R_5763605_SNP [dm3] 2R_9876100_SNP [dm6]	T	G	5.252e^-5	0.557	UTR_3_PRIME CG12744 DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3029241	2L_3029241_SNP [dm3] 2L_3029241_SNP [dm6]	A	T	5.314e^-5	0.56	UPSTREAM CG17219 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2L	15458124	2L_15458124_SNP [dm3] 2L_15458124_SNP [dm6]	T	A	5.344e^-5	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	6561757	2R_6561757_SNP [dm3] 2R_10674252_SNP [dm6]	T	A	5.477e^-5	0.564	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4911554	2L_4911554_SNP [dm3] 2L_4911554_SNP [dm6]	C	A	5.518e^-5	0.564	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5721479	2R_5721479_SNP [dm3] 2R_9833974_SNP [dm6]	G	C	5.522e^-5	0.564	UPSTREAM hebe INTRON hebe	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1497112	3L_1497112_SNP [dm3] 3L_1497112_SNP [dm6]	T	C	5.570e^-5	0.564	UTR_3_PRIME pUf68 UPSTREAM CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5734134	2R_5734134_SNP [dm3] 2R_9846629_SNP [dm6]	T	G	5.619e^-5	0.564	UPSTREAM Orc6 DOWNSTREAM Prosalpha7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2R	7799446	2R_7799446_SNP [dm3] 2R_11911941_SNP [dm6]	T	C	5.700e^-5	0.564	INTRON CG13183
2R	17316615	2R_17316615_SNP [dm3] 2R_21429110_SNP [dm6]	G	A	5.714e^-5	0.564	INTRON Sdc	TF binding site BDTNP1_TFBS_sna
3R	24893549	3R_24893549_DEL [dm3] 3R_29067827_DEL [dm6]	TTAT	A	5.717e^-5	0.564	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12257020	2L_12257020_SNP [dm3] 2L_12257020_SNP [dm6]	A	G	5.745e^-5	0.564	INTRON aret
2R	5731932	2R_5731932_SNP [dm3] 2R_9844427_SNP [dm6]	T	C	5.761e^-5	0.564	INTRON CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	2260373	3L_2260373_SNP [dm3] 3L_2260373_SNP [dm6]	G	A	5.762e^-5	0.564	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3210619	2L_3210619_SNP [dm3] 2L_3210619_SNP [dm6]	A	T	5.769e^-5	0.564	EXON CR45336
3R	16538160	3R_16538160_SNP [dm3] 3R_20712438_SNP [dm6]	G	A	5.863e^-5	0.564	INTRON Oamb
2R	5762328	2R_5762328_SNP [dm3] 2R_9874823_SNP [dm6]	A	G	5.905e^-5	0.564	SPLICE_SITE_REGION cbx UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5731251	2R_5731251_SNP [dm3] 2R_9843746_SNP [dm6]	C	T	5.921e^-5	0.564	START_GAINED CG1667 UTR_5_PRIME CG1667 UPSTREAM CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	3378617	2R_3378617_SNP [dm3] 2R_7491112_SNP [dm6]	G	A	5.926e^-5	0.564	SYNONYMOUS_CODING Coop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	498266	2L_498266_SNP [dm3] 2L_498266_SNP [dm6]	T	A	5.931e^-5	0.564	INTRON ush
2L	17068073	2L_17068073_SNP [dm3] 2L_17068073_SNP [dm6]	A	G	5.942e^-5	0.564	INTERGENIC
2L	4420418	2L_4420418_SNP [dm3] 2L_4420418_SNP [dm6]	T	G	5.949e^-5	0.564	INTRON CG15431
2L	3244760	2L_3244760_SNP [dm3] 2L_3244760_SNP [dm6]	T	C	6.028e^-5	0.565	INTERGENIC
2R	13917987	2R_13917987_SNP [dm3] 2R_18030482_SNP [dm6]	A	T	6.029e^-5	0.565	INTERGENIC
3R	26943105	3R_26943105_SNP [dm3] 3R_31117383_SNP [dm6]	A	G	6.052e^-5	0.565	INTERGENIC
2R	5731331	2R_5731331_SNP [dm3] 2R_9843826_SNP [dm6]	T	A	6.096e^-5	0.566	NON_SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	16098007	X_16098007_SNP [dm3] X_16203974_SNP [dm6]	G	A	6.147e^-5	0.568	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	1578529	2L_1578529_SNP [dm3] 2L_1578529_SNP [dm6]	A	G	6.251e^-5	0.568	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4915939	2L_4915939_SNP [dm3] 2L_4915939_SNP [dm6]	T	C	6.328e^-5	0.568	UPSTREAM hoe1 INTRON hoe1
2L	4420360	2L_4420360_SNP [dm3] 2L_4420360_SNP [dm6]	T	A	6.343e^-5	0.568	INTRON CG15431
2R	13184606	2R_13184606_SNP [dm3] 2R_17297101_SNP [dm6]	T	C	6.368e^-5	0.568	INTRON mbl
2L	1578579	2L_1578579_SNP [dm3] 2L_1578579_SNP [dm6]	G	T	6.420e^-5	0.568	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1578586	2L_1578586_SNP [dm3] 2L_1578586_SNP [dm6]	C	A	6.420e^-5	0.568	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4900694	2L_4900694_SNP [dm3] 2L_4900694_SNP [dm6]	G	T	6.422e^-5	0.568	INTRON CG3036
2R	5731291	2R_5731291_SNP [dm3] 2R_9843786_SNP [dm6]	C	T	6.451e^-5	0.568	UTR_5_PRIME CG1667 UPSTREAM CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	15074805	2R_15074805_SNP [dm3] 2R_19187300_SNP [dm6]	G	C	6.528e^-5	0.568	INTRON hppy
2L	8531505	2L_8531505_SNP [dm3] 2L_8531505_SNP [dm6]	A	T	6.550e^-5	0.568	INTRON CG17834
X	16147078	X_16147078_SNP [dm3] X_16253045_SNP [dm6]	T	C	6.555e^-5	0.568	DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
2L	6278719	2L_6278719_SNP [dm3] 2L_6278719_SNP [dm6]	C	A	6.556e^-5	0.568	SYNONYMOUS_CODING Ddr
3L	9088162	3L_9088162_SNP [dm3] 3L_9095062_SNP [dm6]	C	T	6.593e^-5	0.568	DOWNSTREAM CG32032 INTERGENIC
3R	2227166	3R_2227166_SNP [dm3] 3R_6401444_SNP [dm6]	A	G	6.594e^-5	0.568	INTRON Dmtn	TF binding site BDTNP1_TFBS_dl
2L	8525183	2L_8525183_SNP [dm3] 2L_8525183_SNP [dm6]	G	T	6.608e^-5	0.568	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
X	16952924	X_16952924_SNP [dm3] X_17058891_SNP [dm6]	C	T	6.628e^-5	0.568	INTRON CG45002
3R	20013489	3R_20013489_SNP [dm3] 3R_24187767_SNP [dm6]	G	A	6.759e^-5	0.573	UTR_3_PRIME CG5515 & 1 other	TF binding site mE1_TFBS_sens
3L	9621428	3L_9621428_SNP [dm3] 3L_9628328_SNP [dm6]	G	T	6.764e^-5	0.573	SYNONYMOUS_CODING Or67b UPSTREAM CG8336
3L	2143875	3L_2143875_DEL [dm3] 3L_2143875_DEL [dm6]	GGGAATCG	G	6.794e^-5	0.573	INTRON zormin
2L	15458230	2L_15458230_SNP [dm3] 2L_15458230_SNP [dm6]	G	C	6.808e^-5	0.573	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9621771	3L_9621771_SNP [dm3] 3L_9628671_SNP [dm6]	G	A	7.012e^-5	0.586	UPSTREAM CG8336 INTRON Or67b
3L	2143454	3L_2143454_SNP [dm3] 3L_2143454_SNP [dm6]	T	A	7.029e^-5	0.586	INTRON zormin
3R	26943096	3R_26943096_SNP [dm3] 3R_31117374_SNP [dm6]	G	A	7.090e^-5	0.588	INTERGENIC
2R	9638992	2R_9638992_SNP [dm3] 2R_13751487_SNP [dm6]	C	T	7.161e^-5	0.589	INTERGENIC	transposable element FlyBase
3R	24121146	3R_24121146_SNP [dm3] 3R_28295424_SNP [dm6]	T	G	7.209e^-5	0.589	UPSTREAM CR44229 DOWNSTREAM CG17856 INTERGENIC
2R	14956304	2R_14956304_SNP [dm3] 2R_19068799_SNP [dm6]	A	T	7.217e^-5	0.589	INTRON 5-HT1A
2R	5751130	2R_5751130_INS [dm3] 2R_9863625_INS [dm6]	T	TATTCTGATTCTTTT...	7.242e^-5	0.589	UPSTREAM CG30010 DOWNSTREAM cbx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8756935	3L_8756935_SNP [dm3] 3L_8763835_SNP [dm6]	C	G	7.314e^-5	0.589	INTRON Fhos
X	19980754	X_19980754_SNP [dm3] X_20086721_SNP [dm6]	G	A	7.336e^-5	0.589	INTERGENIC
2R	18565118	2R_18565118_SNP [dm3] 2R_22677613_SNP [dm6]	A	G	7.367e^-5	0.589	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12366723	2L_12366723_SNP [dm3] 2L_12366723_SNP [dm6]	C	G	7.395e^-5	0.589	INTRON bru-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	14186414	2R_14186414_SNP [dm3] 2R_18298909_SNP [dm6]	G	A	7.406e^-5	0.589	UPSTREAM CG18540 DOWNSTREAM CG18539 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5751135	2R_5751135_DEL [dm3] 2R_9863630_DEL [dm6]	GA	G	7.412e^-5	0.589	UPSTREAM CG30010 DOWNSTREAM cbx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7801656	2L_7801656_INS [dm3] 2L_7801656_INS [dm6]	T	TT	7.533e^-5	0.596	UTR_3_PRIME r2d2 DOWNSTREAM cdc14 & 1 other
2R	7666707	2R_7666707_INS [dm3] 2R_11779202_INS [dm6]	T	TT	7.635e^-5	0.599	UTR_3_PRIME CG42493 INTRON ths
X	1549978	X_1549978_SNP [dm3] X_1655945_SNP [dm6]	C	T	7.674e^-5	0.599	UTR_3_PRIME br DOWNSTREAM br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8523117	2L_8523117_SNP [dm3] 2L_8523117_SNP [dm6]	A	G	7.690e^-5	0.599	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	5732693	2R_5732693_SNP [dm3] 2R_9845188_SNP [dm6]	G	A	7.757e^-5	0.599	UTR_3_PRIME CG1667 DOWNSTREAM Orc6
2L	9488960	2L_9488960_SNP [dm3] 2L_9488960_SNP [dm6]	A	T	7.781e^-5	0.599	INTERGENIC
3R	26745266	3R_26745266_SNP [dm3] 3R_30919544_SNP [dm6]	T	G	7.796e^-5	0.599	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3006827	X_3006827_SNP [dm3] X_3112794_SNP [dm6]	A	T	7.798e^-5	0.599	INTRON kirre
2R	5833165	2R_5833165_SNP [dm3] 2R_9945660_SNP [dm6]	A	G	7.981e^-5	0.611	UPSTREAM Mef2 INTRON Mef2
3L	10033176	3L_10033176_SNP [dm3] 3L_10040076_SNP [dm6]	C	G	8.026e^-5	0.612	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1916400	3L_1916400_SNP [dm3] 3L_1916400_SNP [dm6]	A	T	8.169e^-5	0.62	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18001191	2R_18001191_SNP [dm3] 2R_22113686_SNP [dm6]	A	T	8.256e^-5	0.624	UPSTREAM Vrp1 INTRON Vrp1 & 1 other
X	17335909	X_17335909_SNP [dm3] X_17441876_SNP [dm6]	T	C	8.342e^-5	0.627	INTRON CG12994
3R	17908165	3R_17908165_INS [dm3] 3R_22082443_INS [dm6]	A	AAAAGGTT	8.357e^-5	0.627	INTRON CG13408
2L	7210097	2L_7210097_SNP [dm3] 2L_7210097_SNP [dm6]	T	G	8.428e^-5	0.629	INTRON CG13784
2L	3029458	2L_3029458_SNP [dm3] 2L_3029458_SNP [dm6]	G	A	8.478e^-5	0.629	SYNONYMOUS_CODING CG17219 UPSTREAM CG3605 DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
3L	11031363	3L_11031363_SNP [dm3] 3L_11038263_SNP [dm6]	C	T	8.517e^-5	0.629	SYNONYMOUS_CODING CG43693
X	15380138	X_15380138_SNP [dm3] X_15486105_SNP [dm6]	G	A	8.522e^-5	0.629	SYNONYMOUS_CODING CG6340 UTR_3_PRIME CG6340 UPSTREAM Gmap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	23276022	3R_23276022_SNP [dm3] 3R_27450300_SNP [dm6]	C	G	8.644e^-5	0.63	INTERGENIC
3L	9161604	3L_9161604_SNP [dm3] 3L_9168504_SNP [dm6]	T	G	8.666e^-5	0.63	INTRON Rdl
X	8094272	X_8094272_DEL [dm3] X_8200239_DEL [dm6]	ATATATGTACATA...	A	8.668e^-5	0.63	INTRON sdt
2R	13184610	2R_13184610_SNP [dm3] 2R_17297105_SNP [dm6]	A	C	8.693e^-5	0.63	INTRON mbl
3L	9620372	3L_9620372_SNP [dm3] 3L_9627272_SNP [dm6]	A	T	8.718e^-5	0.63	UTR_3_PRIME CG3335 DOWNSTREAM Or67b
2R	14185313	2R_14185313_SNP [dm3] 2R_18297808_SNP [dm6]	A	G	8.739e^-5	0.63	UTR_5_PRIME CG18539 UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb
3R	10763537	3R_10763537_SNP [dm3] 3R_14937815_SNP [dm6]	A	T	8.791e^-5	0.631	INTERGENIC
2L	15458384	2L_15458384_SNP [dm3] 2L_15458384_SNP [dm6]	T	C	8.809e^-5	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	5837854	2R_5837854_DEL [dm3] 2R_9950349_DEL [dm6]	CTCTGTCATCGCAAATCTAT...	T	8.928e^-5	0.636	INTRON Mef2
2L	17068770	2L_17068770_INS [dm3] 2L_17068770_INS [dm6]	T	TTGTAATAGCAAGT...	8.967e^-5	0.636	INTERGENIC
X	13619935	X_13619935_SNP [dm3] X_13725902_SNP [dm6]	C	A	9.020e^-5	0.636	SYNONYMOUS_CODING mus101	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2260288	3L_2260288_SNP [dm3] 3L_2260288_SNP [dm6]	G	A	9.045e^-5	0.636	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3506104	3L_3506104_SNP [dm3] 3L_3506104_SNP [dm6]	C	T	9.056e^-5	0.636	NON_SYNONYMOUS_CODING CG42324 DOWNSTREAM CG42324	TF binding site mE1_TFBS_cad
2L	8533806	2L_8533806_SNP [dm3] 2L_8533806_SNP [dm6]	C	G	9.114e^-5	0.638	INTRON CG17834	TF binding site mE1_TFBS_cad
3L	2679592	3L_2679592_SNP [dm3] 3L_2679592_SNP [dm6]	A	T	9.186e^-5	0.639	INTRON Fife	TF binding site mE1_TFBS_chinmo
2R	13786354	2R_13786354_SNP [dm3] 2R_17898849_SNP [dm6]	C	T	9.193e^-5	0.639	INTRON Elk	TF binding site BDTNP1_TFBS_twi
X	7930627	X_7930627_SNP [dm3] X_8036594_SNP [dm6]	A	G	9.292e^-5	0.643	SYNONYMOUS_CODING CG2233
3L	2144084	3L_2144084_SNP [dm3] 3L_2144084_SNP [dm6]	A	G	9.390e^-5	0.644	INTRON zormin
2L	3885408	2L_3885408_SNP [dm3] 2L_3885408_SNP [dm6]	A	C	9.448e^-5	0.644	INTRON capu	TF binding site mE1_TFBS_bab1
2R	16714481	2R_16714481_SNP [dm3] 2R_20826976_SNP [dm6]	G	C	9.482e^-5	0.644	DOWNSTREAM sktl INTRON insc
2L	8604840	2L_8604840_SNP [dm3] 2L_8604840_SNP [dm6]	G	C	9.491e^-5	0.644	INTRON Sema-1a
2L	5527323	2L_5527323_SNP [dm3] 2L_5527323_SNP [dm6]	T	C	9.491e^-5	0.644	SYNONYMOUS_CODING CG31648 UPSTREAM CR44793 & 1 other INTRON Cap-D3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	14183979	2R_14183979_SNP [dm3] 2R_18296474_SNP [dm6]	G	C	9.510e^-5	0.644	SYNONYMOUS_CODING CG18537 UPSTREAM CG18538 DOWNSTREAM CG18536 INTRON sbb
2L	15458192	2L_15458192_SNP [dm3] 2L_15458192_SNP [dm6]	C	T	9.577e^-5	0.644	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15458391	2L_15458391_DEL [dm3] 2L_15458391_DEL [dm6]	TTCACCCGCATT...	T	9.577e^-5	0.644	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3506136	3L_3506136_SNP [dm3] 3L_3506136_SNP [dm6]	C	G	9.651e^-5	0.646	NON_SYNONYMOUS_CODING CG42324 DOWNSTREAM CG42324	TF binding site mE1_TFBS_cad
2R	5751122	2R_5751122_DEL [dm3] 2R_9863617_DEL [dm6]	TCGCTGT	T	9.705e^-5	0.646	UPSTREAM CG30010 DOWNSTREAM cbx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5706528	2R_5706528_SNP [dm3] 2R_9819023_SNP [dm6]	G	A	9.727e^-5	0.646	DOWNSTREAM lectin-46Ca INTRON CG1648
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	9.783e^-5	0.646	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4910829	2L_4910829_SNP [dm3] 2L_4910829_SNP [dm6]	A	G	9.805e^-5	0.646	SYNONYMOUS_CODING hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7093566	3L_7093566_SNP [dm3] 3L_7100466_SNP [dm6]	G	A	9.827e^-5	0.646	INTRON form3
2R	5730387	2R_5730387_SNP [dm3] 2R_9842882_SNP [dm6]	G	A	9.850e^-5	0.646	UPSTREAM Vamp7 & 1 other INTRON CG1667	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18609603	2L_18609603_SNP [dm3] 2L_18609603_SNP [dm6]	A	G	9.913e^-5	0.648	UTR_3_PRIME Atac2 DOWNSTREAM CG10333
2L	12094289	2L_12094289_SNP [dm3] 2L_12094289_SNP [dm6]	T	A	1.001e^-4	0.65	SYNONYMOUS_CODING Pex19 DOWNSTREAM CG6712	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16434897	3R_16434897_SNP [dm3] 3R_20609175_SNP [dm6]	C	T	1.003e^-4	0.65	INTRON bon
2L	3029377	2L_3029377_SNP [dm3] 2L_3029377_SNP [dm6]	T	C	1.006e^-4	0.65	UTR_5_PRIME CG17219 UPSTREAM CG3605	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2L	16646743	2L_16646743_SNP [dm3] 2L_16646743_SNP [dm6]	A	T	1.008e^-4	0.65	INTRON CG42389
2R	12851800	2R_12851800_SNP [dm3] 2R_16964295_SNP [dm6]	G	T	1.017e^-4	0.65	EXON CR44376
2R	9915155	2R_9915155_INS [dm3] 2R_14027650_INS [dm6]	A	AC	1.018e^-4	0.65	UPSTREAM CG18371 INTRON mam
2L	4911975	2L_4911975_SNP [dm3] 2L_4911975_SNP [dm6]	C	T	1.019e^-4	0.65	INTRON hoe1	TF binding site mE1_TFBS_chinmo
2L	3827837	2L_3827837_INS [dm3] 2L_3827837_INS [dm6]	A	AA	1.022e^-4	0.65	DOWNSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17642953	2R_17642953_SNP [dm3] 2R_21755448_SNP [dm6]	T	A	1.036e^-4	0.656	INTERGENIC
2R	14186338	2R_14186338_SNP [dm3] 2R_18298833_SNP [dm6]	G	A	1.040e^-4	0.657	SYNONYMOUS_CODING CG18539 UPSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_twi
3R	10687983	3R_10687983_SNP [dm3] 3R_14862261_SNP [dm6]	T	A	1.046e^-4	0.658	INTRON btsz
3L	7094020	3L_7094020_SNP [dm3] 3L_7100920_SNP [dm6]	T	G	1.054e^-4	0.659	INTRON form3
2R	5777540	2R_5777540_SNP [dm3] 2R_9890035_SNP [dm6]	T	C	1.055e^-4	0.659	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
3R	24893589	3R_24893589_SNP [dm3] 3R_29067867_SNP [dm6]	A	T	1.063e^-4	0.662	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18377216	2L_18377216_SNP [dm3] 2L_18377216_SNP [dm6]	A	G	1.083e^-4	0.666	INTRON Fas3
X	10287826	X_10287826_SNP [dm3] X_10393793_SNP [dm6]	C	T	1.085e^-4	0.666	INTRON flw
2L	3029560	2L_3029560_SNP [dm3] 2L_3029560_SNP [dm6]	G	A	1.094e^-4	0.666	SYNONYMOUS_CODING CG17219 UPSTREAM CG3605 & 1 other DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2L	2860652	2L_2860652_SNP [dm3] 2L_2860652_SNP [dm6]	T	A	1.095e^-4	0.666	INTRON CG2991	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2R	7000690	2R_7000690_DEL [dm3] 2R_11113185_DEL [dm6]	AATTACTACA	A	1.096e^-4	0.666	INTRON luna
2R	3778614	2R_3778614_SNP [dm3] 2R_7891109_SNP [dm6]	C	A	1.097e^-4	0.666	INTRON CG30377
2L	9852976	2L_9852976_SNP [dm3] 2L_9852976_SNP [dm6]	T	C	1.100e^-4	0.666	INTRON nAChRalpha6
2R	5732741	2R_5732741_SNP [dm3] 2R_9845236_SNP [dm6]	A	T	1.108e^-4	0.666	DOWNSTREAM Orc6 INTRON CG1667
3R	5079321	3R_5079321_SNP [dm3] 3R_9253599_SNP [dm6]	G	T	1.109e^-4	0.666	DOWNSTREAM St2 EXON CR16735
2L	2501026	2L_2501026_SNP [dm3] 2L_2501026_SNP [dm6]	C	T	1.114e^-4	0.666	INTERGENIC
3R	19843873	3R_19843873_SNP [dm3] 3R_24018151_SNP [dm6]	A	T	1.115e^-4	0.666	INTRON KrT95D
3L	4104373	3L_4104373_SNP [dm3] 3L_4104373_SNP [dm6]	C	T	1.116e^-4	0.666	SYNONYMOUS_CODING Fit1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	5716364	2R_5716364_SNP [dm3] 2R_9828859_SNP [dm6]	T	G	1.116e^-4	0.666	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17068943	2L_17068943_SNP [dm3] 2L_17068943_SNP [dm6]	C	G	1.121e^-4	0.668	INTERGENIC
2R	5699501	2R_5699501_SNP [dm3] 2R_9811996_SNP [dm6]	G	T	1.134e^-4	0.672	INTRON CG1648
3R	26943120	3R_26943120_SNP [dm3] 3R_31117398_SNP [dm6]	T	G	1.144e^-4	0.672	INTERGENIC
2R	14618020	2R_14618020_SNP [dm3] 2R_18730515_SNP [dm6]	T	A	1.147e^-4	0.672	UPSTREAM List INTRON Hs3st-A
3L	15264619	3L_15264619_SNP [dm3] 3L_15271519_SNP [dm6]	C	T	1.149e^-4	0.672	INTERGENIC
2L	2495827	2L_2495827_SNP [dm3] 2L_2495827_SNP [dm6]	C	T	1.150e^-4	0.672	SYNONYMOUS_CODING oaf
2R	18261102	2R_18261102_SNP [dm3] 2R_22373597_SNP [dm6]	A	T	1.150e^-4	0.672	UPSTREAM Liprin-gamma DOWNSTREAM CR44759 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1218425	2L_1218425_SNP [dm3] 2L_1218425_SNP [dm6]	T	A	1.156e^-4	0.673	UPSTREAM CR43263 & 1 other INTERGENIC
2R	13184603	2R_13184603_SNP [dm3] 2R_17297098_SNP [dm6]	T	C	1.161e^-4	0.674	INTRON mbl
2L	1177249	2L_1177249_SNP [dm3] 2L_1177249_SNP [dm6]	C	T	1.175e^-4	0.678	UPSTREAM CG4896 INTRON CG4887	TF binding site BDTNP1_TFBS_dl
2L	1194517	2L_1194517_SNP [dm3] 2L_1194517_SNP [dm6]	G	A	1.177e^-4	0.678	INTRON CG5001
2L	4903899	2L_4903899_SNP [dm3] 2L_4903899_SNP [dm6]	G	C	1.178e^-4	0.678	UTR_3_PRIME CG2837 DOWNSTREAM CG2837 & 1 other
2L	8531671	2L_8531671_SNP [dm3] 2L_8531671_SNP [dm6]	A	T	1.184e^-4	0.679	INTRON CG17834
2R	5790017	2R_5790017_SNP [dm3] 2R_9902512_SNP [dm6]	A	T	1.199e^-4	0.686	INTRON CG1441	TF binding site mE1_TFBS_cad
X	1878332	X_1878332_SNP [dm3] X_1984299_SNP [dm6]	T	C	1.204e^-4	0.686	INTRON Hr4
2R	5722542	2R_5722542_SNP [dm3] 2R_9835037_SNP [dm6]	A	C	1.256e^-4	0.707	INTRON hebe	TF binding site mE1_TFBS_HSA
2L	9853049	2L_9853049_SNP [dm3] 2L_9853049_SNP [dm6]	G	T	1.258e^-4	0.707	INTRON nAChRalpha6
2R	5743682	2R_5743682_SNP [dm3] 2R_9856177_SNP [dm6]	G	A	1.260e^-4	0.707	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18955430	3L_18955430_SNP [dm3] 3L_18962330_SNP [dm6]	T	A	1.264e^-4	0.707	INTERGENIC
X	14082999	X_14082999_SNP [dm3] X_14188966_SNP [dm6]	C	T	1.266e^-4	0.707	UPSTREAM CG11585 INTERGENIC
2R	10955673	2R_10955673_DEL [dm3] 2R_15068168_DEL [dm6]	GT	G	1.271e^-4	0.707	INTERGENIC
3L	1197403	3L_1197403_SNP [dm3] 3L_1197403_SNP [dm6]	G	A	1.276e^-4	0.707	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15454551	2L_15454551_SNP [dm3] 2L_15454551_SNP [dm6]	T	A	1.276e^-4	0.707	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9088136	3L_9088136_SNP [dm3] 3L_9095036_SNP [dm6]	A	G	1.276e^-4	0.707	DOWNSTREAM CG32032 INTERGENIC
2R	5747883	2R_5747883_SNP [dm3] 2R_9860378_SNP [dm6]	G	A	1.281e^-4	0.707	UTR_5_PRIME CG1516 UPSTREAM CR44293 INTRON CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	19840021	2R_19840021_SNP [dm3] 2R_23952498_SNP [dm6]	G	A	1.289e^-4	0.707	DOWNSTREAM CG3803 & 2 others INTERGENIC
3L	3506205	3L_3506205_SNP [dm3] 3L_3506205_SNP [dm6]	C	G	1.296e^-4	0.707	NON_SYNONYMOUS_CODING CG42324 DOWNSTREAM CG42324	TF binding site mE1_TFBS_cad
2L	4925818	2L_4925818_SNP [dm3] 2L_4925818_SNP [dm6]	T	C	1.299e^-4	0.707	INTRON hoe1
3L	2475043	3L_2475043_SNP [dm3] 3L_2475043_SNP [dm6]	G	A	1.302e^-4	0.707	SYNONYMOUS_CODING CG16762 INTRON CG45186
2L	7509144	2L_7509144_SNP [dm3] 2L_7509144_SNP [dm6]	T	G	1.305e^-4	0.707	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	5771199	2R_5771199_SNP [dm3] 2R_9883694_SNP [dm6]	C	T	1.310e^-4	0.707	UTR_3_PRIME CG1513
X	3006822	X_3006822_SNP [dm3] X_3112789_SNP [dm6]	C	T	1.326e^-4	0.707	INTRON kirre
2L	3029400	2L_3029400_SNP [dm3] 2L_3029400_SNP [dm6]	C	G	1.328e^-4	0.707	START_GAINED CG17219 UTR_5_PRIME CG17219 UPSTREAM CG3605	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
3L	13422674	3L_13422674_SNP [dm3] 3L_13429574_SNP [dm6]	C	T	1.328e^-4	0.707	NON_SYNONYMOUS_CODING CG10713	TF binding site mE1_TFBS_chinmo
2R	5833236	2R_5833236_SNP [dm3] 2R_9945731_SNP [dm6]	A	T	1.333e^-4	0.707	UPSTREAM Mef2 INTRON Mef2
3L	12896910	3L_12896910_SNP [dm3] 3L_12903810_SNP [dm6]	G	A	1.335e^-4	0.707	UPSTREAM CG32117 INTERGENIC
3L	1198495	3L_1198495_DEL [dm3] 3L_1198495_DEL [dm6]	TC	T	1.337e^-4	0.707	INTRON Aplip1
X	7059927	X_7059927_SNP [dm3] X_7165894_SNP [dm6]	G	A	1.337e^-4	0.707	DOWNSTREAM CR44357 INTRON CG9650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	18345818	2R_18345818_SNP [dm3] 2R_22458313_SNP [dm6]	G	T	1.341e^-4	0.707	INTRON CG10384
3L	7091206	3L_7091206_SNP [dm3] 3L_7098106_SNP [dm6]	C	T	1.343e^-4	0.707	INTRON form3
2L	15458161	2L_15458161_SNP [dm3] 2L_15458161_SNP [dm6]	A	T	1.344e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11196944	3L_11196944_SNP [dm3] 3L_11203844_SNP [dm6]	A	T	1.345e^-4	0.707	INTRON Plod
2L	15458494	2L_15458494_SNP [dm3] 2L_15458494_SNP [dm6]	G	T	1.345e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11674498	2R_11674498_SNP [dm3] 2R_15786993_SNP [dm6]	T	A	1.352e^-4	0.707	INTRON Zasp52
X	564235	X_564235_SNP [dm3] X_670202_SNP [dm6]	T	C	1.354e^-4	0.707	INTERGENIC
3R	16538192	3R_16538192_SNP [dm3] 3R_20712470_SNP [dm6]	C	G	1.380e^-4	0.715	INTRON Oamb
2L	3029465	2L_3029465_SNP [dm3] 2L_3029465_SNP [dm6]	C	A	1.394e^-4	0.715	NON_SYNONYMOUS_CODING CG17219 UPSTREAM CG3605 DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
2R	8467841	2R_8467841_SNP [dm3] 2R_12580336_SNP [dm6]	G	A	1.398e^-4	0.715	NON_SYNONYMOUS_CODING Sin3A
3R	16522461	3R_16522461_SNP [dm3] 3R_20696739_SNP [dm6]	C	T	1.399e^-4	0.715	INTRON Oamb
2L	3244729	2L_3244729_SNP [dm3] 2L_3244729_SNP [dm6]	A	G	1.404e^-4	0.715	INTERGENIC
3R	10763626	3R_10763626_SNP [dm3] 3R_14937904_SNP [dm6]	C	T	1.408e^-4	0.715	INTERGENIC
2R	5750353	2R_5750353_SNP [dm3] 2R_9862848_SNP [dm6]	T	C	1.413e^-4	0.715	UPSTREAM CG30010 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3006385	X_3006385_SNP [dm3] X_3112352_SNP [dm6]	A	G	1.414e^-4	0.715	INTRON kirre
3R	8439190	3R_8439190_SNP [dm3] 3R_12613468_SNP [dm6]	T	A	1.415e^-4	0.715	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26943115	3R_26943115_SNP [dm3] 3R_31117393_SNP [dm6]	T	G	1.415e^-4	0.715	INTERGENIC
2L	12873796	2L_12873796_DEL [dm3] 2L_12873796_DEL [dm6]	CACTC	C	1.418e^-4	0.715	INTERGENIC
2L	1627206	2L_1627206_SNP [dm3] 2L_1627206_SNP [dm6]	T	C	1.419e^-4	0.715	INTERGENIC
2R	5714614	2R_5714614_SNP [dm3] 2R_9827109_SNP [dm6]	T	C	1.419e^-4	0.715	NON_SYNONYMOUS_CODING dila DOWNSTREAM hebe	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8345490	2L_8345490_DEL [dm3] 2L_8345490_DEL [dm6]	AGGGCCGAGTGTTATTTAAA...	A	1.422e^-4	0.715	UPSTREAM CR45371 INTERGENIC
3R	26406814	3R_26406814_SNP [dm3] 3R_30581092_SNP [dm6]	C	G	1.429e^-4	0.717	SYNONYMOUS_CODING CG9702	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15458421	2L_15458421_SNP [dm3] 2L_15458421_SNP [dm6]	T	G	1.436e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14216307	2R_14216307_SNP [dm3] 2R_18328802_SNP [dm6]	G	A	1.450e^-4	0.723	INTRON sbb
2R	18260478	2R_18260478_SNP [dm3] 2R_22372973_SNP [dm6]	C	T	1.455e^-4	0.723	UTR_5_PRIME Liprin-gamma DOWNSTREAM CR44759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	6671196	2L_6671196_SNP [dm3] 2L_6671196_SNP [dm6]	G	A	1.457e^-4	0.723	UTR_3_PRIME Spn27A DOWNSTREAM Spn27A INTRON cup & 1 other
3L	14350661	3L_14350661_SNP [dm3] 3L_14357561_SNP [dm6]	C	T	1.477e^-4	0.727	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	2860651	2L_2860651_SNP [dm3] 2L_2860651_SNP [dm6]	T	A	1.479e^-4	0.727	INTRON CG2991	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2R	18260097	2R_18260097_SNP [dm3] 2R_22372592_SNP [dm6]	A	G	1.484e^-4	0.727	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2L	9488964	2L_9488964_SNP [dm3] 2L_9488964_SNP [dm6]	T	G	1.485e^-4	0.727	INTERGENIC
2R	17636850	2R_17636850_SNP [dm3] 2R_21749345_SNP [dm6]	T	C	1.485e^-4	0.727	INTERGENIC
2L	1586265	2L_1586265_SNP [dm3] 2L_1586265_SNP [dm6]	T	C	1.498e^-4	0.732	SYNONYMOUS_CODING CG10869 INTRON haf	TF binding site BDTNP1_TFBS_sna
2L	2495800	2L_2495800_SNP [dm3] 2L_2495800_SNP [dm6]	C	A	1.506e^-4	0.732	SYNONYMOUS_CODING oaf
2L	4896499	2L_4896499_SNP [dm3] 2L_4896499_SNP [dm6]	G	T	1.508e^-4	0.732	INTRON CG3036
2R	18015182	2R_18015182_SNP [dm3] 2R_22127677_SNP [dm6]	C	T	1.510e^-4	0.732	UPSTREAM NtR & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2R	16714474	2R_16714474_SNP [dm3] 2R_20826969_SNP [dm6]	G	A	1.526e^-4	0.736	DOWNSTREAM sktl INTRON insc
3R	16344562	3R_16344562_SNP [dm3] 3R_20518840_SNP [dm6]	G	T	1.540e^-4	0.736	INTERGENIC
2R	13852538	2R_13852538_SNP [dm3] 2R_17965033_SNP [dm6]	G	C	1.541e^-4	0.736	INTERGENIC
3R	12215417	3R_12215417_SNP [dm3] 3R_16389695_SNP [dm6]	C	T	1.542e^-4	0.736	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1185275	2L_1185275_SNP [dm3] 2L_1185275_SNP [dm6]	A	C	1.546e^-4	0.736	SYNONYMOUS_CODING Tgt UPSTREAM CG5001	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	8551144	3L_8551144_SNP [dm3] 3L_8558044_SNP [dm6]	G	A	1.548e^-4	0.736	UTR_5_PRIME rhea INTRON rhea	TF binding site mE1_TFBS_HSA
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	1.557e^-4	0.736	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13449198	2R_13449198_SNP [dm3] 2R_17561693_SNP [dm6]	G	T	1.558e^-4	0.736	SPLICE_SITE_REGION Klp54D INTRON Klp54D
3R	15101153	3R_15101153_SNP [dm3] 3R_19275431_SNP [dm6]	A	G	1.563e^-4	0.736	INTERGENIC
2L	12429663	2L_12429663_SNP [dm3] 2L_12429663_SNP [dm6]	G	A	1.568e^-4	0.736	SYNONYMOUS_CODING CG6388 DOWNSTREAM CG5435	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5774158	2R_5774158_SNP [dm3] 2R_9886653_SNP [dm6]	C	G	1.571e^-4	0.736	UPSTREAM CG1513 & 1 other INTRON CG1513
2L	1185304	2L_1185304_SNP [dm3] 2L_1185304_SNP [dm6]	T	C	1.580e^-4	0.736	SYNONYMOUS_CODING Tgt UPSTREAM CG5001	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	20316123	X_20316123_SNP [dm3] X_20445096_SNP [dm6]	A	C	1.581e^-4	0.736	UTR_3_PRIME CG1695	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8325093	2L_8325093_SNP [dm3] 2L_8325093_SNP [dm6]	G	A	1.591e^-4	0.736	UTR_5_PRIME CG7781
3R	25616902	3R_25616902_SNP [dm3] 3R_29791180_SNP [dm6]	C	G	1.596e^-4	0.736	INTRON kay	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7768629	3R_7768629_SNP [dm3] 3R_11942907_SNP [dm6]	C	T	1.596e^-4	0.736	INTRON Cad87A
2R	5734792	2R_5734792_SNP [dm3] 2R_9847287_SNP [dm6]	G	A	1.599e^-4	0.736	SYNONYMOUS_CODING Prosalpha7 UPSTREAM Orc6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	12870905	2L_12870905_SNP [dm3] 2L_12870905_SNP [dm6]	T	A	1.600e^-4	0.736	INTERGENIC
2R	5738140	2R_5738140_SNP [dm3] 2R_9850635_SNP [dm6]	C	A	1.606e^-4	0.736	UTR_3_PRIME CG1671 DOWNSTREAM CG1516
3L	10902863	3L_10902863_SNP [dm3] 3L_10909763_SNP [dm6]	C	G	1.606e^-4	0.736	INTERGENIC
2L	3037438	2L_3037438_MNP [dm3] 2L_3037438_MNP [dm6]	GACA	CGGC	1.608e^-4	0.736	UTR_5_PRIME CG17260 UPSTREAM CG17260 & 1 other INTRON CG17260	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	15458164	2L_15458164_SNP [dm3] 2L_15458164_SNP [dm6]	T	G	1.608e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	9535593	3R_9535593_SNP [dm3] 3R_13709871_SNP [dm6]	T	G	1.622e^-4	0.736	DOWNSTREAM primo-2 & 2 others INTRON CG31469
2L	6529609	2L_6529609_SNP [dm3] 2L_6529609_SNP [dm6]	C	T	1.622e^-4	0.736	SYNONYMOUS_CODING eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5773894	2R_5773894_SNP [dm3] 2R_9886389_SNP [dm6]	A	C	1.623e^-4	0.736	START_GAINED CG1513 UTR_5_PRIME CG1513 INTRON CG1513
2L	12366750	2L_12366750_SNP [dm3] 2L_12366750_SNP [dm6]	A	G	1.624e^-4	0.736	INTRON bru-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	4312483	2L_4312483_SNP [dm3] 2L_4312483_SNP [dm6]	C	T	1.630e^-4	0.736	INTRON tutl
2L	9351875	2L_9351875_SNP [dm3] 2L_9351875_SNP [dm6]	C	A	1.633e^-4	0.736	DOWNSTREAM CG13110 INTERGENIC
2L	3029562	2L_3029562_SNP [dm3] 2L_3029562_SNP [dm6]	A	T	1.644e^-4	0.736	NON_SYNONYMOUS_CODING CG17219 UPSTREAM CG3605 & 1 other DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2L	3029552	2L_3029552_SNP [dm3] 2L_3029552_SNP [dm6]	A	C	1.650e^-4	0.736	NON_SYNONYMOUS_CODING CG17219 UPSTREAM CG3605 & 1 other DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2R	14185681	2R_14185681_SNP [dm3] 2R_18298176_SNP [dm6]	T	G	1.661e^-4	0.736	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb & 1 other
3R	19904803	3R_19904803_SNP [dm3] 3R_24079081_SNP [dm6]	G	A	1.662e^-4	0.736	INTRON 4EHP
2L	1663233	2L_1663233_DEL [dm3] 2L_1663233_DEL [dm6]	TC	T	1.663e^-4	0.736	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16040483	3L_16040483_SNP [dm3] 3L_16047383_SNP [dm6]	C	T	1.664e^-4	0.736	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19398584	2R_19398584_SNP [dm3] 2R_23511061_SNP [dm6]	A	G	1.667e^-4	0.736	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4911563	2L_4911563_SNP [dm3] 2L_4911563_SNP [dm6]	A	T	1.667e^-4	0.736	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	571250	X_571250_INS [dm3] X_677217_INS [dm6]	A	AATATATATATTTATATACA...	1.667e^-4	0.736	INTERGENIC
2R	7672593	2R_7672593_SNP [dm3] 2R_11785088_SNP [dm6]	C	T	1.668e^-4	0.736	INTRON ths	TF binding site mE1_TFBS_cad
3R	21990271	3R_21990271_SNP [dm3] 3R_26164549_SNP [dm6]	T	C	1.681e^-4	0.738	INTERGENIC
3R	10688057	3R_10688057_SNP [dm3] 3R_14862335_SNP [dm6]	A	G	1.691e^-4	0.738	INTRON btsz
2R	14574857	2R_14574857_SNP [dm3] 2R_18687352_SNP [dm6]	A	T	1.698e^-4	0.738	UPSTREAM CG42855 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	617998	2L_617998_SNP [dm3] 2L_617998_SNP [dm6]	C	T	1.707e^-4	0.738	INTERGENIC
2R	18078690	2R_18078690_SNP [dm3] 2R_22191185_SNP [dm6]	G	A	1.708e^-4	0.738	SYNONYMOUS_CODING Swim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17908167	3R_17908167_SNP [dm3] 3R_22082445_SNP [dm6]	G	C	1.715e^-4	0.738	INTRON CG13408
X	4860126	X_4860126_SNP [dm3] X_4966093_SNP [dm6]	C	G	1.717e^-4	0.738	INTRON CR44833	regulatory region REDfly_CRMs
X	13315925	X_13315925_DEL [dm3] X_13421892_DEL [dm6]	AA	A	1.719e^-4	0.738	DOWNSTREAM Set2 INTERGENIC
2L	12257033	2L_12257033_SNP [dm3] 2L_12257033_SNP [dm6]	A	G	1.720e^-4	0.738	INTRON aret
2R	5702915	2R_5702915_SNP [dm3] 2R_9815410_SNP [dm6]	C	T	1.721e^-4	0.738	UPSTREAM lectin-46Cb INTRON CG1648	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	10425527	2R_10425527_SNP [dm3] 2R_14538022_SNP [dm6]	G	C	1.723e^-4	0.738	INTRON ttv
2R	18260070	2R_18260070_SNP [dm3] 2R_22372565_SNP [dm6]	T	C	1.723e^-4	0.738	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
3R	12933323	3R_12933323_SNP [dm3] 3R_17107601_SNP [dm6]	A	G	1.724e^-4	0.738	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18820270	2L_18820270_SNP [dm3] 2L_18820270_SNP [dm6]	T	C	1.731e^-4	0.738	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
3R	6574639	3R_6574639_SNP [dm3] 3R_10748917_SNP [dm6]	C	T	1.741e^-4	0.738	INTRON TkR86C
2L	15458063	2L_15458063_SNP [dm3] 2L_15458063_SNP [dm6]	T	C	1.741e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16807371	3L_16807371_SNP [dm3] 3L_16814271_SNP [dm6]	G	T	1.741e^-4	0.738	INTRON nudC & 1 other
2R	11181149	2R_11181149_SNP [dm3] 2R_15293644_SNP [dm6]	A	C	1.744e^-4	0.738	DOWNSTREAM CR44241 INTRON Trpm	TF binding site BDTNP1_TFBS_twi
2L	8521004	2L_8521004_SNP [dm3] 2L_8521004_SNP [dm6]	C	A	1.746e^-4	0.738	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	5874152	2R_5874152_SNP [dm3] 2R_9986647_SNP [dm6]	G	T	1.760e^-4	0.742	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2L	8525348	2L_8525348_SNP [dm3] 2L_8525348_SNP [dm6]	T	A	1.776e^-4	0.747	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2R	5832970	2R_5832970_SNP [dm3] 2R_9945465_SNP [dm6]	C	T	1.782e^-4	0.748	UPSTREAM Mef2 INTRON Mef2
3R	15812356	3R_15812356_SNP [dm3] 3R_19986634_SNP [dm6]	T	G	1.795e^-4	0.75	INTRON Hs6st
2L	6671224	2L_6671224_SNP [dm3] 2L_6671224_SNP [dm6]	T	A	1.797e^-4	0.75	UTR_3_PRIME Spn27A DOWNSTREAM Spn27A INTRON cup & 1 other
3L	11397563	3L_11397563_SNP [dm3] 3L_11404463_SNP [dm6]	G	T	1.800e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	10688193	3R_10688193_SNP [dm3] 3R_14862471_SNP [dm6]	A	G	1.810e^-4	0.751	INTRON btsz
2R	18015169	2R_18015169_SNP [dm3] 2R_22127664_SNP [dm6]	A	G	1.811e^-4	0.751	UPSTREAM NtR & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2R	5873252	2R_5873252_SNP [dm3] 2R_9985747_SNP [dm6]	G	A	1.817e^-4	0.753	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5740205	2R_5740205_SNP [dm3] 2R_9852700_SNP [dm6]	A	C	1.823e^-4	0.753	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_chinmo
2R	6229818	2R_6229818_SNP [dm3] 2R_10342313_SNP [dm6]	T	A	1.826e^-4	0.753	INTRON CG42732
2L	12093853	2L_12093853_SNP [dm3] 2L_12093853_SNP [dm6]	A	C	1.838e^-4	0.755	UTR_5_PRIME Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	12523957	2R_12523957_SNP [dm3] 2R_16636452_SNP [dm6]	C	T	1.843e^-4	0.755	INTRON Alk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11873494	3L_11873494_SNP [dm3] 3L_11880394_SNP [dm6]	G	T	1.849e^-4	0.755	NON_SYNONYMOUS_CODING CG14128 UPSTREAM CCDC151 INTRON CG44837
3R	18130630	3R_18130630_SNP [dm3] 3R_22304908_SNP [dm6]	A	G	1.850e^-4	0.755	DOWNSTREAM CG7084 INTERGENIC
2R	3053069	2R_3053069_SNP [dm3] 2R_7165564_SNP [dm6]	C	T	1.852e^-4	0.755	INTRON pk	TF binding site mE1_TFBS_chinmo
2R	7588634	2R_7588634_SNP [dm3] 2R_11701129_SNP [dm6]	T	C	1.856e^-4	0.755	NON_SYNONYMOUS_CODING Ir48b UPSTREAM Ir48a	TF binding site mE1_TFBS_sens
3L	2259467	3L_2259467_SNP [dm3] 3L_2259467_SNP [dm6]	C	T	1.864e^-4	0.756	SYNONYMOUS_CODING oxt DOWNSTREAM CG2034	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19666772	X_19666772_SNP [dm3] X_19772739_SNP [dm6]	C	T	1.869e^-4	0.756	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1025915	2L_1025915_SNP [dm3] 2L_1025915_SNP [dm6]	C	T	1.875e^-4	0.756	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo
3R	22431654	3R_22431654_SNP [dm3] 3R_26605932_SNP [dm6]	A	C	1.879e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9777081	3R_9777081_SNP [dm3] 3R_13951359_SNP [dm6]	G	T	1.880e^-4	0.756	UPSTREAM CG9926 INTERGENIC
3R	17325574	3R_17325574_SNP [dm3] 3R_21499852_SNP [dm6]	G	A	1.883e^-4	0.756	UPSTREAM C15 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1241020	2L_1241020_INS [dm3] 2L_1241020_INS [dm6]	A	ATGATCTA	1.890e^-4	0.756	INTRON CG5397	TF binding site mE1_TFBS_chinmo
2L	4622875	2L_4622875_SNP [dm3] 2L_4622875_SNP [dm6]	C	T	1.891e^-4	0.756	INTERGENIC
2R	20134350	2R_20134350_SNP [dm3] 2R_24246827_SNP [dm6]	A	G	1.898e^-4	0.756	INTRON nord
3L	2810179	3L_2810179_SNP [dm3] 3L_2810179_SNP [dm6]	G	A	1.903e^-4	0.756	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	18002498	2R_18002498_SNP [dm3] 2R_22114993_SNP [dm6]	A	G	1.909e^-4	0.756	UPSTREAM CG30281 DOWNSTREAM CG30280 INTRON Vrp1
2R	16388508	2R_16388508_SNP [dm3] 2R_20501003_SNP [dm6]	T	G	1.911e^-4	0.756	INTERGENIC	regulatory region REDfly_CRMs
3R	23335980	3R_23335980_SNP [dm3] 3R_27510258_SNP [dm6]	G	A	1.913e^-4	0.756	INTERGENIC
2L	9353105	2L_9353105_SNP [dm3] 2L_9353105_SNP [dm6]	C	T	1.914e^-4	0.756	INTERGENIC
2R	5704415	2R_5704415_SNP [dm3] 2R_9816910_SNP [dm6]	A	T	1.929e^-4	0.759	UPSTREAM lectin-46Ca DOWNSTREAM lectin-46Cb INTRON CG1648
2R	15750103	2R_15750103_SNP [dm3] 2R_19862598_SNP [dm6]	C	T	1.930e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	10643597	2R_10643597_SNP [dm3] 2R_14756092_SNP [dm6]	G	A	1.944e^-4	0.76	START_GAINED CG10151 UTR_5_PRIME CG10151 UPSTREAM CG12859 & 1 other DOWNSTREAM Trs31 INTRON CG10151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	12366552	2L_12366552_SNP [dm3] 2L_12366552_SNP [dm6]	T	A	1.947e^-4	0.76	INTRON bru-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	3506135	3L_3506135_SNP [dm3] 3L_3506135_SNP [dm6]	A	C	1.948e^-4	0.76	NON_SYNONYMOUS_CODING CG42324 DOWNSTREAM CG42324	TF binding site mE1_TFBS_cad
2R	13405958	2R_13405958_SNP [dm3] 2R_17518453_SNP [dm6]	T	G	1.950e^-4	0.76	UPSTREAM APC10 DOWNSTREAM Patronin INTRON CG4866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5864445	2R_5864445_SNP [dm3] 2R_9976940_SNP [dm6]	T	G	1.955e^-4	0.76	DOWNSTREAM CR43948 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8468002	2R_8468002_SNP [dm3] 2R_12580497_SNP [dm6]	A	T	1.959e^-4	0.76	SYNONYMOUS_CODING Sin3A
3L	10413559	3L_10413559_SNP [dm3] 3L_10420459_SNP [dm6]	A	G	1.964e^-4	0.76	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8529270	2L_8529270_SNP [dm3] 2L_8529270_SNP [dm6]	C	A	1.976e^-4	0.76	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	4925682	2L_4925682_SNP [dm3] 2L_4925682_SNP [dm6]	T	A	1.978e^-4	0.76	INTRON hoe1
3R	15101129	3R_15101129_SNP [dm3] 3R_19275407_SNP [dm6]	A	T	1.987e^-4	0.76	INTERGENIC
3R	16809891	3R_16809891_SNP [dm3] 3R_20984169_SNP [dm6]	A	C	1.989e^-4	0.76	INTRON Calx
2R	5701605	2R_5701605_SNP [dm3] 2R_9814100_SNP [dm6]	C	A	1.989e^-4	0.76	INTRON CG1648
2R	13184086	2R_13184086_SNP [dm3] 2R_17296581_SNP [dm6]	T	C	1.989e^-4	0.76	INTRON mbl
2L	12875632	2L_12875632_DEL [dm3] 2L_12875632_DEL [dm6]	GA	G	1.995e^-4	0.76	INTERGENIC
3L	10515171	3L_10515171_SNP [dm3] 3L_10522071_SNP [dm6]	C	T	2.001e^-4	0.76	INTRON A2bp1	TF binding site BDTNP1_TFBS_prd
2R	5699719	2R_5699719_SNP [dm3] 2R_9812214_SNP [dm6]	G	A	2.006e^-4	0.76	INTRON CG1648
3R	17399563	3R_17399563_SNP [dm3] 3R_21573841_SNP [dm6]	T	C	2.014e^-4	0.76	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad
X	571471	X_571471_SNP [dm3] X_677438_SNP [dm6]	T	C	2.020e^-4	0.76	INTERGENIC
2R	7587996	2R_7587996_SNP [dm3] 2R_11700491_SNP [dm6]	T	C	2.021e^-4	0.76	UPSTREAM Ir48a DOWNSTREAM Ir48b INTERGENIC
X	7059915	X_7059915_SNP [dm3] X_7165882_SNP [dm6]	A	C	2.022e^-4	0.76	DOWNSTREAM CR44357 INTRON CG9650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	15852534	2L_15852534_SNP [dm3] 2L_15852534_SNP [dm6]	G	T	2.024e^-4	0.76	UPSTREAM CG13243 INTERGENIC
3R	15101132	3R_15101132_SNP [dm3] 3R_19275410_SNP [dm6]	C	G	2.025e^-4	0.76	INTERGENIC
2L	10910706	2L_10910706_SNP [dm3] 2L_10910706_SNP [dm6]	C	T	2.029e^-4	0.76	UPSTREAM CG14069 INTERGENIC
3R	23259539	3R_23259539_SNP [dm3] 3R_27433817_SNP [dm6]	G	A	2.031e^-4	0.76	INTRON side
X	12622523	X_12622523_SNP [dm3] X_12728490_SNP [dm6]	A	T	2.036e^-4	0.76	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16756757	3L_16756757_SNP [dm3] 3L_16763657_SNP [dm6]	G	A	2.038e^-4	0.76	INTERGENIC
X	14660971	X_14660971_SNP [dm3] X_14766938_SNP [dm6]	C	A	2.046e^-4	0.762	INTERGENIC	transposable element FlyBase
2L	12366860	2L_12366860_SNP [dm3] 2L_12366860_SNP [dm6]	A	T	2.051e^-4	0.762	INTRON bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17908174	3R_17908174_SNP [dm3] 3R_22082452_SNP [dm6]	G	A	2.056e^-4	0.762	INTRON CG13408
2R	13184179	2R_13184179_SNP [dm3] 2R_17296674_SNP [dm6]	T	C	2.061e^-4	0.763	INTRON mbl
3R	19904790	3R_19904790_SNP [dm3] 3R_24079068_SNP [dm6]	C	T	2.069e^-4	0.764	INTRON 4EHP
3L	10464752	3L_10464752_SNP [dm3] 3L_10471652_SNP [dm6]	G	T	2.093e^-4	0.771	INTERGENIC
2R	13189221	2R_13189221_SNP [dm3] 2R_17301716_SNP [dm6]	T	C	2.106e^-4	0.773	INTRON mbl
2R	5734463	2R_5734463_SNP [dm3] 2R_9846958_SNP [dm6]	G	T	2.108e^-4	0.773	UPSTREAM Orc6 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6079953	3L_6079953_SNP [dm3] 3L_6086853_SNP [dm6]	T	C	2.109e^-4	0.773	INTRON CG13293
3R	17908179	3R_17908179_SNP [dm3] 3R_22082457_SNP [dm6]	G	T	2.120e^-4	0.773	INTRON CG13408
2R	6078901	2R_6078901_SNP [dm3] 2R_10191396_SNP [dm6]	C	T	2.125e^-4	0.773	INTRON KCNQ
2R	12686258	2R_12686258_SNP [dm3] 2R_16798753_SNP [dm6]	T	C	2.127e^-4	0.773	INTERGENIC
2L	16646788	2L_16646788_SNP [dm3] 2L_16646788_SNP [dm6]	A	T	2.136e^-4	0.773	INTRON CG42389
2R	13184183	2R_13184183_SNP [dm3] 2R_17296678_SNP [dm6]	A	G	2.137e^-4	0.773	INTRON mbl
2R	19223966	2R_19223966_SNP [dm3] 2R_23336443_SNP [dm6]	G	A	2.147e^-4	0.773	INTERGENIC
3R	1914624	3R_1914624_SNP [dm3] 3R_6088902_SNP [dm6]	T	C	2.152e^-4	0.773	UTR_3_PRIME Gasp
3R	16601254	3R_16601254_SNP [dm3] 3R_20775532_SNP [dm6]	G	T	2.156e^-4	0.773	INTRON Syp
3R	14075844	3R_14075844_SNP [dm3] 3R_18250122_SNP [dm6]	T	C	2.157e^-4	0.773	UTR_3_PRIME 14-3-3epsilon UPSTREAM CG18598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4925681	2L_4925681_SNP [dm3] 2L_4925681_SNP [dm6]	T	A	2.161e^-4	0.773	INTRON hoe1
2L	7510047	2L_7510047_SNP [dm3] 2L_7510047_SNP [dm6]	C	A	2.163e^-4	0.773	INTRON RapGAP1
3L	12769930	3L_12769930_SNP [dm3] 3L_12776830_SNP [dm6]	G	C	2.168e^-4	0.773	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
2L	5860768	2L_5860768_SNP [dm3] 2L_5860768_SNP [dm6]	T	C	2.170e^-4	0.773	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17330073	3R_17330073_DEL [dm3] 3R_21504351_DEL [dm6]	GT	G	2.173e^-4	0.773	INTRON C15	TF binding site mE1_TFBS_chinmo
3R	5698723	3R_5698723_SNP [dm3] 3R_9873001_SNP [dm6]	T	C	2.175e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5774157	2R_5774157_SNP [dm3] 2R_9886652_SNP [dm6]	C	T	2.185e^-4	0.773	UPSTREAM CG1513 & 1 other INTRON CG1513
3R	22431693	3R_22431693_SNP [dm3] 3R_26605971_SNP [dm6]	A	G	2.187e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2238940	3R_2238940_SNP [dm3] 3R_6413218_SNP [dm6]	T	G	2.192e^-4	0.773	INTRON gpp
2R	18260039	2R_18260039_SNP [dm3] 2R_22372534_SNP [dm6]	G	A	2.193e^-4	0.773	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	7732412	2R_7732412_SNP [dm3] 2R_11844907_SNP [dm6]	T	A	2.194e^-4	0.773	SYNONYMOUS_CODING CG43190 UPSTREAM S2P & 1 other EXON CR44304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1235884	2L_1235884_SNP [dm3] 2L_1235884_SNP [dm6]	A	T	2.209e^-4	0.774	INTERGENIC
2L	4925620	2L_4925620_SNP [dm3] 2L_4925620_SNP [dm6]	C	T	2.211e^-4	0.774	INTRON hoe1
3L	17488346	3L_17488346_SNP [dm3] 3L_17495246_SNP [dm6]	G	T	2.211e^-4	0.774	UTR_3_PRIME edin INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	5720931	2R_5720931_SNP [dm3] 2R_9833426_SNP [dm6]	T	G	2.215e^-4	0.774	INTRON hebe	TF binding site mE1_TFBS_cad
2L	3028779	2L_3028779_SNP [dm3] 2L_3028779_SNP [dm6]	G	C	2.224e^-4	0.774	SYNONYMOUS_CODING CG3605 UPSTREAM CG17219	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	989061	2L_989061_SNP [dm3] 2L_989061_SNP [dm6]	T	C	2.224e^-4	0.774	EXON CR44801	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8011054	3L_8011054_SNP [dm3] 3L_8017954_SNP [dm6]	G	A	2.224e^-4	0.774	INTRON nmo
X	4863066	X_4863066_SNP [dm3] X_4969033_SNP [dm6]	T	G	2.231e^-4	0.774	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7059940	X_7059940_SNP [dm3] X_7165907_SNP [dm6]	A	T	2.235e^-4	0.774	DOWNSTREAM CR44357 INTRON CG9650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	12533985	X_12533985_SNP [dm3] X_12639952_SNP [dm6]	G	A	2.239e^-4	0.774	INTRON Tomosyn
2L	16566472	2L_16566472_SNP [dm3] 2L_16566472_SNP [dm6]	C	T	2.247e^-4	0.774	INTRON CG42389
2R	12851826	2R_12851826_SNP [dm3] 2R_16964321_SNP [dm6]	T	C	2.250e^-4	0.774	EXON CR44376
2L	2677651	2L_2677651_SNP [dm3] 2L_2677651_SNP [dm6]	G	A	2.253e^-4	0.774	UPSTREAM CG31690 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17130916	2L_17130916_SNP [dm3] 2L_17130916_SNP [dm6]	G	A	2.254e^-4	0.774	UPSTREAM beat-IIIa & 1 other INTERGENIC
3L	4135933	3L_4135933_SNP [dm3] 3L_4135933_SNP [dm6]	C	G	2.267e^-4	0.776	SYNONYMOUS_CODING RfC4 DOWNSTREAM Rop	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	619715	2L_619715_SNP [dm3] 2L_619715_SNP [dm6]	A	T	2.270e^-4	0.776	DOWNSTREAM lectin-21Cb INTERGENIC
3L	11873475	3L_11873475_SNP [dm3] 3L_11880375_SNP [dm6]	C	A	2.271e^-4	0.776	SYNONYMOUS_CODING CG14128 INTRON CG44837
2L	4911560	2L_4911560_SNP [dm3] 2L_4911560_SNP [dm6]	C	T	2.288e^-4	0.778	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17825625	3R_17825625_SNP [dm3] 3R_21999903_SNP [dm6]	A	G	2.291e^-4	0.778	INTRON Eip93F
3R	17334022	3R_17334022_SNP [dm3] 3R_21508300_SNP [dm6]	C	A	2.296e^-4	0.778	INTRON C15
2R	8688036	2R_8688036_SNP [dm3] 2R_12800531_SNP [dm6]	G	A	2.297e^-4	0.778	SYNONYMOUS_CODING sca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19466062	2R_19466062_SNP [dm3] 2R_23578539_SNP [dm6]	C	A	2.311e^-4	0.778	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17908178	3R_17908178_SNP [dm3] 3R_22082456_SNP [dm6]	A	G	2.311e^-4	0.778	INTRON CG13408
3L	2679532	3L_2679532_SNP [dm3] 3L_2679532_SNP [dm6]	G	T	2.311e^-4	0.778	INTRON Fife	TF binding site mE1_TFBS_chinmo
2L	579986	2L_579986_SNP [dm3] 2L_579986_SNP [dm6]	C	T	2.314e^-4	0.778	DOWNSTREAM Pph13 INTERGENIC
2L	9052025	2L_9052025_SNP [dm3] 2L_9052025_SNP [dm6]	A	C	2.315e^-4	0.778	UTR_3_PRIME CG31708
2L	1240283	2L_1240283_SNP [dm3] 2L_1240283_SNP [dm6]	C	T	2.328e^-4	0.779	SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo
2L	1177205	2L_1177205_DEL [dm3] 2L_1177205_DEL [dm6]	CGGC	C	2.335e^-4	0.779	UPSTREAM CG4896 INTRON CG4887	TF binding site BDTNP1_TFBS_dl
3R	15814658	3R_15814658_SNP [dm3] 3R_19988936_SNP [dm6]	G	A	2.335e^-4	0.779	INTRON Hs6st	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5731484	2R_5731484_SNP [dm3] 2R_9843979_SNP [dm6]	A	G	2.339e^-4	0.779	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	12194819	3R_12194819_SNP [dm3] 3R_16369097_SNP [dm6]	A	G	2.343e^-4	0.779	UTR_3_PRIME CG10317 UPSTREAM CG14880 DOWNSTREAM CG10317	regulatory region REDfly_CRMs
2R	5735871	2R_5735871_SNP [dm3] 2R_9848366_SNP [dm6]	G	T	2.350e^-4	0.779	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5701241	2R_5701241_SNP [dm3] 2R_9813736_SNP [dm6]	C	T	2.352e^-4	0.779	UPSTREAM CG1648 INTRON CG1648
3R	4415347	3R_4415347_SNP [dm3] 3R_8589625_SNP [dm6]	T	C	2.357e^-4	0.779	INTRON 5-HT2B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2413683	X_2413683_SNP [dm3] X_2519650_SNP [dm6]	A	G	2.359e^-4	0.779	INTRON trol
3R	4658576	3R_4658576_SNP [dm3] 3R_8832854_SNP [dm6]	G	T	2.370e^-4	0.779	SYNONYMOUS_CODING pyd DOWNSTREAM pyd INTRON pyd
2L	3028427	2L_3028427_SNP [dm3] 2L_3028427_SNP [dm6]	T	C	2.373e^-4	0.779	NON_SYNONYMOUS_CODING CG3605 UPSTREAM CG17219	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	20325747	3R_20325747_SNP [dm3] 3R_24500025_SNP [dm6]	G	A	2.376e^-4	0.779	INTERGENIC
X	15380303	X_15380303_SNP [dm3] X_15486270_SNP [dm6]	A	T	2.389e^-4	0.779	SYNONYMOUS_CODING CG6340 UTR_3_PRIME CG6340 UPSTREAM Gmap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	14116579	3L_14116579_SNP [dm3] 3L_14123479_SNP [dm6]	G	T	2.400e^-4	0.779	INTRON Sox21b
2L	1177210	2L_1177210_SNP [dm3] 2L_1177210_SNP [dm6]	A	G	2.403e^-4	0.779	UPSTREAM CG4896 INTRON CG4887	TF binding site BDTNP1_TFBS_dl
3R	17001959	3R_17001959_SNP [dm3] 3R_21176237_SNP [dm6]	G	A	2.419e^-4	0.779	INTRON SNF4Agamma
2R	18260071	2R_18260071_SNP [dm3] 2R_22372566_SNP [dm6]	T	A	2.421e^-4	0.779	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	3744188	2R_3744188_SNP [dm3] 2R_7856683_SNP [dm6]	A	T	2.427e^-4	0.779	INTRON Dgk
2R	13133935	2R_13133935_SNP [dm3] 2R_17246430_SNP [dm6]	A	C	2.429e^-4	0.779	UPSTREAM CG18469 DOWNSTREAM CG12699 INTRON mbl
3L	9620022	3L_9620022_SNP [dm3] 3L_9626922_SNP [dm6]	C	A	2.436e^-4	0.779	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_inv
2R	14955674	2R_14955674_SNP [dm3] 2R_19068169_SNP [dm6]	T	C	2.439e^-4	0.779	INTRON 5-HT1A
2R	17431587	2R_17431587_SNP [dm3] 2R_21544082_SNP [dm6]	C	T	2.439e^-4	0.779	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	5731415	2R_5731415_SNP [dm3] 2R_9843910_SNP [dm6]	G	T	2.447e^-4	0.779	SPLICE_SITE_REGION CG1667 INTRON CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	2.450e^-4	0.779	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13753210	3L_13753210_SNP [dm3] 3L_13760110_SNP [dm6]	G	A	2.455e^-4	0.779	INTRON bru-3
2R	17370395	2R_17370395_SNP [dm3] 2R_21482890_SNP [dm6]	G	C	2.458e^-4	0.779	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad
3L	9092655	3L_9092655_DEL [dm3] 3L_9099555_DEL [dm6]	ACTA	A	2.464e^-4	0.779	UTR_3_PRIME bol
2R	14612546	2R_14612546_SNP [dm3] 2R_18725041_SNP [dm6]	C	T	2.467e^-4	0.779	INTRON Hs3st-A
3L	9620788	3L_9620788_SNP [dm3] 3L_9627688_SNP [dm6]	C	A	2.472e^-4	0.779	UPSTREAM CG8336 DOWNSTREAM CG3335 INTRON Or67b
2R	6077523	2R_6077523_SNP [dm3] 2R_10190018_SNP [dm6]	A	G	2.473e^-4	0.779	INTRON KCNQ
2L	10184430	2L_10184430_SNP [dm3] 2L_10184430_SNP [dm6]	T	G	2.473e^-4	0.779	INTRON Sur
2L	1233991	2L_1233991_SNP [dm3] 2L_1233991_SNP [dm6]	C	A	2.477e^-4	0.779	INTERGENIC
2L	7093219	2L_7093219_SNP [dm3] 2L_7093219_SNP [dm6]	G	A	2.483e^-4	0.779	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8841832	X_8841832_SNP [dm3] X_8947799_SNP [dm6]	G	A	2.494e^-4	0.779	INTRON rdgA
2R	5720273	2R_5720273_SNP [dm3] 2R_9832768_SNP [dm6]	A	G	2.498e^-4	0.779	INTRON hebe
3L	14348925	3L_14348925_SNP [dm3] 3L_14355825_SNP [dm6]	C	T	2.500e^-4	0.779	INTRON fz	TF binding site BDTNP1_TFBS_dl
3R	18092041	3R_18092041_INS [dm3] 3R_22266319_INS [dm6]	A	AATA	2.508e^-4	0.779	INTRON SKIP
3R	17825597	3R_17825597_SNP [dm3] 3R_21999875_SNP [dm6]	T	G	2.508e^-4	0.779	INTRON Eip93F
X	16735745	X_16735745_SNP [dm3] X_16841712_SNP [dm6]	T	A	2.511e^-4	0.779	INTRON RSG7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14562520	2L_14562520_SNP [dm3] 2L_14562520_SNP [dm6]	A	T	2.512e^-4	0.779	DOWNSTREAM CG3473 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	13706523	X_13706523_SNP [dm3] X_13812490_SNP [dm6]	A	G	2.517e^-4	0.779	SYNONYMOUS_CODING CG11095 DOWNSTREAM inaE & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5736846	2R_5736846_SNP [dm3] 2R_9849341_SNP [dm6]	T	C	2.517e^-4	0.779	SYNONYMOUS_CODING CG1671	TF binding site mE1_TFBS_sens
3L	10527567	3L_10527567_SNP [dm3] 3L_10534467_SNP [dm6]	A	T	2.520e^-4	0.779	INTRON A2bp1
3L	11031306	3L_11031306_SNP [dm3] 3L_11038206_SNP [dm6]	G	A	2.535e^-4	0.779	SYNONYMOUS_CODING CG43693
2R	14294579	2R_14294579_SNP [dm3] 2R_18407074_SNP [dm6]	A	G	2.537e^-4	0.779	SYNONYMOUS_CODING GstE7 UPSTREAM GstE8 DOWNSTREAM GstE6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18260048	2R_18260048_SNP [dm3] 2R_22372543_SNP [dm6]	T	G	2.543e^-4	0.779	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	482538	2R_482538_SNP [dm3] 2R_4595033_SNP [dm6]	G	A	2.544e^-4	0.779	UPSTREAM p120ctn INTERGENIC
3R	15100978	3R_15100978_SNP [dm3] 3R_19275256_SNP [dm6]	T	C	2.550e^-4	0.779	INTERGENIC
2R	9968583	2R_9968583_INS [dm3] 2R_14081078_INS [dm6]	A	AA	2.552e^-4	0.779	INTRON Prosap
3R	13655166	3R_13655166_SNP [dm3] 3R_17829444_SNP [dm6]	G	T	2.552e^-4	0.779	INTRON tinc
2R	5731933	2R_5731933_INS [dm3] 2R_9844428_INS [dm6]	T	TT	2.557e^-4	0.779	INTRON CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	18652493	3R_18652493_SNP [dm3] 3R_22826771_SNP [dm6]	T	C	2.572e^-4	0.779	EXON CR44350
3R	3619795	3R_3619795_SNP [dm3] 3R_7794073_SNP [dm6]	C	T	2.573e^-4	0.779	UTR_5_PRIME CG2641 DOWNSTREAM CG10086	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15073423	3L_15073423_SNP [dm3] 3L_15080323_SNP [dm6]	C	T	2.581e^-4	0.779	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	18260101	2R_18260101_SNP [dm3] 2R_22372596_SNP [dm6]	T	C	2.581e^-4	0.779	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	5873286	2R_5873286_SNP [dm3] 2R_9985781_SNP [dm6]	C	T	2.586e^-4	0.779	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3775699	2R_3775699_SNP [dm3] 2R_7888194_SNP [dm6]	A	G	2.587e^-4	0.779	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13720800	X_13720800_SNP [dm3] X_13826767_SNP [dm6]	G	A	2.592e^-4	0.779	DOWNSTREAM Nup93-1 INTRON jub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8529353	2L_8529353_DEL [dm3] 2L_8529353_DEL [dm6]	ATAAAAA	A	2.604e^-4	0.779	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_prd
2R	17431581	2R_17431581_SNP [dm3] 2R_21544076_SNP [dm6]	C	T	2.607e^-4	0.779	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6340331	2R_6340331_SNP [dm3] 2R_10452826_SNP [dm6]	C	T	2.609e^-4	0.779	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
3L	7089891	3L_7089891_SNP [dm3] 3L_7096791_SNP [dm6]	C	T	2.611e^-4	0.779	INTRON form3
2R	12850910	2R_12850910_SNP [dm3] 2R_16963405_SNP [dm6]	C	T	2.611e^-4	0.779	UPSTREAM CR44376 INTERGENIC
2R	15467481	2R_15467481_SNP [dm3] 2R_19579976_SNP [dm6]	C	T	2.614e^-4	0.779	INTRON sm
3L	6451397	3L_6451397_SNP [dm3] 3L_6458297_SNP [dm6]	C	T	2.617e^-4	0.779	INTRON CG42747	TF binding site mE1_TFBS_sens
2R	5864833	2R_5864833_SNP [dm3] 2R_9977328_SNP [dm6]	G	A	2.619e^-4	0.779	EXON CR43948	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2R	5699489	2R_5699489_SNP [dm3] 2R_9811984_SNP [dm6]	A	T	2.621e^-4	0.779	INTRON CG1648
3L	2139700	3L_2139700_SNP [dm3] 3L_2139700_SNP [dm6]	T	A	2.626e^-4	0.779	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16538185	3R_16538185_SNP [dm3] 3R_20712463_SNP [dm6]	G	C	2.629e^-4	0.779	INTRON Oamb
2L	561199	2L_561199_SNP [dm3] 2L_561199_SNP [dm6]	C	T	2.635e^-4	0.779	SYNONYMOUS_CODING CG11835 UPSTREAM rempA DOWNSTREAM CG2789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10876720	3L_10876720_SNP [dm3] 3L_10883620_SNP [dm6]	T	A	2.645e^-4	0.779	DOWNSTREAM CG6404 & 1 other INTERGENIC
2L	3502470	2L_3502470_SNP [dm3] 2L_3502470_SNP [dm6]	G	C	2.646e^-4	0.779	SYNONYMOUS_CODING tim
2L	6126882	2L_6126882_SNP [dm3] 2L_6126882_SNP [dm6]	T	C	2.663e^-4	0.779	DOWNSTREAM Arpc4 & 2 others INTRON WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7666696	2R_7666696_INS [dm3] 2R_11779191_INS [dm6]	A	ATGTA	2.664e^-4	0.779	UTR_3_PRIME CG42493 INTRON ths
2R	5699811	2R_5699811_SNP [dm3] 2R_9812306_SNP [dm6]	G	C	2.666e^-4	0.779	INTRON CG1648
2L	18524558	2L_18524558_DEL [dm3] 2L_18524558_DEL [dm6]	TT	T	2.668e^-4	0.779	UPSTREAM CR44903 INTRON CG10211	TF binding site mE1_TFBS_inv
2L	7093843	2L_7093843_SNP [dm3] 2L_7093843_SNP [dm6]	A	C	2.669e^-4	0.779	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1575643	2L_1575643_SNP [dm3] 2L_1575643_SNP [dm6]	C	A	2.671e^-4	0.779	INTRON haf
3L	16046325	3L_16046325_SNP [dm3] 3L_16053225_SNP [dm6]	C	T	2.671e^-4	0.779	UTR_5_PRIME Mbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2475070	3L_2475070_SNP [dm3] 3L_2475070_SNP [dm6]	C	G	2.678e^-4	0.779	SYNONYMOUS_CODING CG16762 INTRON CG45186
3L	17999358	3L_17999358_SNP [dm3] 3L_18006258_SNP [dm6]	T	A	2.681e^-4	0.779	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1777833	3L_1777833_SNP [dm3] 3L_1777833_SNP [dm6]	C	A	2.685e^-4	0.779	SYNONYMOUS_CODING mRpL46 UPSTREAM CG2021 DOWNSTREAM CG12018 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	18610288	2L_18610288_SNP [dm3] 2L_18610288_SNP [dm6]	C	T	2.687e^-4	0.779	SYNONYMOUS_CODING Atac2 DOWNSTREAM CG10333	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15562980	3L_15562980_SNP [dm3] 3L_15569880_SNP [dm6]	C	A	2.688e^-4	0.779	SYNONYMOUS_CODING CG6498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1235419	2L_1235419_SNP [dm3] 2L_1235419_SNP [dm6]	C	G	2.688e^-4	0.779	INTERGENIC
2R	18260089	2R_18260089_SNP [dm3] 2R_22372584_SNP [dm6]	A	C	2.688e^-4	0.779	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2L	11018487	2L_11018487_SNP [dm3] 2L_11018487_SNP [dm6]	T	C	2.689e^-4	0.779	SYNONYMOUS_CODING CG14913 INTRON Samuel
2L	3164243	2L_3164243_SNP [dm3] 2L_3164243_SNP [dm6]	T	A	2.691e^-4	0.779	DOWNSTREAM CR31953 INTRON Hydr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3164276	2L_3164276_INS [dm3] 2L_3164276_INS [dm6]	T	TATTT	2.691e^-4	0.779	DOWNSTREAM CR31953 INTRON Hydr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	1200663	2L_1200663_SNP [dm3] 2L_1200663_SNP [dm6]	T	C	2.696e^-4	0.779	UTR_3_PRIME CG43349 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
X	8430365	X_8430365_SNP [dm3] X_8536332_SNP [dm6]	A	G	2.697e^-4	0.779	INTRON Nrg
3R	6955617	3R_6955617_SNP [dm3] 3R_11129895_SNP [dm6]	T	G	2.706e^-4	0.78	INTERGENIC
2R	9969889	2R_9969889_SNP [dm3] 2R_14082384_SNP [dm6]	T	C	2.709e^-4	0.78	INTRON Prosap
2R	7677154	2R_7677154_SNP [dm3] 2R_11789649_SNP [dm6]	T	C	2.712e^-4	0.78	UPSTREAM ths & 1 other INTRON ths	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6949180	X_6949180_SNP [dm3] X_7055147_SNP [dm6]	A	G	2.715e^-4	0.78	INTRON CG12541
3L	14356716	3L_14356716_SNP [dm3] 3L_14363616_SNP [dm6]	G	A	2.721e^-4	0.78	INTRON fz
2L	17068440	2L_17068440_DEL [dm3] 2L_17068440_DEL [dm6]	GGA	G	2.723e^-4	0.78	INTERGENIC
3L	3505987	3L_3505987_SNP [dm3] 3L_3505987_SNP [dm6]	A	G	2.733e^-4	0.781	DOWNSTREAM CG42324 INTRON CG42324
2L	12877203	2L_12877203_SNP [dm3] 2L_12877203_SNP [dm6]	G	A	2.735e^-4	0.781	INTERGENIC
3L	2037346	3L_2037346_SNP [dm3] 3L_2037346_SNP [dm6]	T	A	2.761e^-4	0.787	DOWNSTREAM CG42355 INTERGENIC
2R	14185678	2R_14185678_SNP [dm3] 2R_18298173_SNP [dm6]	A	G	2.768e^-4	0.787	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb & 1 other
3R	7768663	3R_7768663_SNP [dm3] 3R_11942941_SNP [dm6]	C	A	2.769e^-4	0.787	INTRON Cad87A
2R	5701108	2R_5701108_SNP [dm3] 2R_9813603_SNP [dm6]	T	A	2.777e^-4	0.788	UPSTREAM CG1648 INTRON CG1648
2R	8425406	2R_8425406_SNP [dm3] 2R_12537901_SNP [dm6]	C	T	2.779e^-4	0.788	INTRON fra
3L	9612948	3L_9612948_SNP [dm3] 3L_9619848_SNP [dm6]	G	C	2.796e^-4	0.791	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16972488	2L_16972488_SNP [dm3] 2L_16972488_SNP [dm6]	T	C	2.814e^-4	0.794	UPSTREAM beat-IIIb INTERGENIC	TF binding site mE1_TFBS_Trl
3L	2679584	3L_2679584_SNP [dm3] 3L_2679584_SNP [dm6]	A	G	2.815e^-4	0.794	INTRON Fife	TF binding site mE1_TFBS_chinmo
2L	15454552	2L_15454552_SNP [dm3] 2L_15454552_SNP [dm6]	A	G	2.824e^-4	0.795	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15365812	2R_15365812_SNP [dm3] 2R_19478307_SNP [dm6]	T	C	2.835e^-4	0.796	INTRON par-1
2L	5860795	2L_5860795_SNP [dm3] 2L_5860795_SNP [dm6]	A	G	2.835e^-4	0.796	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	571262	X_571262_SNP [dm3] X_677229_SNP [dm6]	G	T	2.852e^-4	0.797	INTERGENIC
3R	14647605	3R_14647605_SNP [dm3] 3R_18821883_SNP [dm6]	G	C	2.856e^-4	0.797	INTRON CG18208
2R	5773878	2R_5773878_SNP [dm3] 2R_9886373_SNP [dm6]	C	A	2.859e^-4	0.797	UTR_5_PRIME CG1513 INTRON CG1513
3R	15369395	3R_15369395_SNP [dm3] 3R_19543673_SNP [dm6]	C	T	2.862e^-4	0.797	INTRON Dys
2R	5704397	2R_5704397_SNP [dm3] 2R_9816892_SNP [dm6]	C	A	2.865e^-4	0.797	UPSTREAM lectin-46Ca DOWNSTREAM lectin-46Cb INTRON CG1648
3L	22601622	3L_22601622_SNP [dm3] 3L_22608522_SNP [dm6]	G	A	2.867e^-4	0.797	INTRON CG14459	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7762214	3R_7762214_SNP [dm3] 3R_11936492_SNP [dm6]	T	A	2.878e^-4	0.797	INTRON Cad87A
X	1549829	X_1549829_SNP [dm3] X_1655796_SNP [dm6]	T	C	2.878e^-4	0.797	UTR_3_PRIME br DOWNSTREAM br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25616349	3R_25616349_SNP [dm3] 3R_29790627_SNP [dm6]	T	C	2.881e^-4	0.797	NON_SYNONYMOUS_CODING kay INTRON kay	TF binding site mE1_TFBS_cad
2L	10038214	2L_10038214_SNP [dm3] 2L_10038214_SNP [dm6]	G	A	2.894e^-4	0.797	SPLICE_SITE_REGION obst-B INTRON obst-B
X	14660941	X_14660941_SNP [dm3] X_14766908_SNP [dm6]	A	T	2.897e^-4	0.797	INTERGENIC	transposable element FlyBase
2R	5885427	2R_5885427_SNP [dm3] 2R_9997922_SNP [dm6]	G	A	2.904e^-4	0.797	INTRON Pka-R2
3R	23289851	3R_23289851_DEL [dm3] 3R_27464129_DEL [dm6]	TTTCAGGGCTAAAT...	T	2.905e^-4	0.797	UPSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_cad
2L	5382358	2L_5382358_SNP [dm3] 2L_5382358_SNP [dm6]	A	T	2.907e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5873269	2R_5873269_INS [dm3] 2R_9985764_INS [dm6]	G	GGTCGTTC	2.911e^-4	0.797	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7336601	2L_7336601_DEL [dm3] 2L_7336601_DEL [dm6]	TGT	T	2.912e^-4	0.797	INTRON Wnt6
3R	9560594	3R_9560594_SNP [dm3] 3R_13734872_SNP [dm6]	C	T	2.913e^-4	0.797	UPSTREAM CG34383 INTRON CG34383
2R	13183748	2R_13183748_SNP [dm3] 2R_17296243_SNP [dm6]	C	G	2.916e^-4	0.797	INTRON mbl
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	2.929e^-4	0.799	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7092991	3L_7092991_SNP [dm3] 3L_7099891_SNP [dm6]	G	A	2.932e^-4	0.799	INTRON form3
2R	16949408	2R_16949408_SNP [dm3] 2R_21061903_SNP [dm6]	C	A	2.943e^-4	0.8	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54	TF binding site mE1_TFBS_HSA
2L	1208775	2L_1208775_SNP [dm3] 2L_1208775_SNP [dm6]	A	C	2.953e^-4	0.8	INTERGENIC
3R	24104572	3R_24104572_SNP [dm3] 3R_28278850_SNP [dm6]	A	T	2.953e^-4	0.8	INTERGENIC
3R	16574761	3R_16574761_SNP [dm3] 3R_20749039_SNP [dm6]	C	A	2.958e^-4	0.8	UTR_5_PRIME Prosalpha4T1 INTRON CG42322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10013707	2R_10013707_INS [dm3] 2R_14126202_INS [dm6]	T	TAT	2.961e^-4	0.8	INTRON Prosap
2R	18015691	2R_18015691_SNP [dm3] 2R_22128186_SNP [dm6]	A	G	2.962e^-4	0.8	UPSTREAM GM130 INTRON NtR	TF binding site mE1_TFBS_cad
2R	263803	2R_263803_SNP [dm3] 2R_4376298_SNP [dm6]	C	A	2.967e^-4	0.801	INTRON Gprk1
3L	3193172	3L_3193172_SNP [dm3] 3L_3193172_SNP [dm6]	G	A	2.971e^-4	0.801	UTR_5_PRIME Hsp83 UPSTREAM Hsp83 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18023694	3L_18023694_SNP [dm3] 3L_18030594_SNP [dm6]	A	G	2.980e^-4	0.801	INTRON Eip75B
2R	12620407	2R_12620407_SNP [dm3] 2R_16732902_SNP [dm6]	T	C	2.983e^-4	0.801	START_GAINED CG30463 UTR_5_PRIME CG30463
2L	19652107	2L_19652107_SNP [dm3] 2L_19652107_SNP [dm6]	A	C	2.994e^-4	0.803	INTRON Lar
2R	16848466	2R_16848466_SNP [dm3] 2R_20960961_SNP [dm6]	A	T	3.004e^-4	0.805	UPSTREAM hbn INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17068817	2L_17068817_SNP [dm3] 2L_17068817_SNP [dm6]	T	A	3.025e^-4	0.809	INTERGENIC
2L	1177379	2L_1177379_SNP [dm3] 2L_1177379_SNP [dm6]	G	A	3.034e^-4	0.81	UTR_3_PRIME CG4887 UPSTREAM CG4896	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9449126	3R_9449126_SNP [dm3] 3R_13623404_SNP [dm6]	C	T	3.035e^-4	0.81	INTERGENIC
3L	13982353	3L_13982353_SNP [dm3] 3L_13989253_SNP [dm6]	C	T	3.056e^-4	0.814	DOWNSTREAM CG9040 INTRON CG17364
2L	9848084	2L_9848084_SNP [dm3] 2L_9848084_SNP [dm6]	A	C	3.063e^-4	0.814	UPSTREAM CR43766 INTRON nAChRalpha6
2R	5885406	2R_5885406_SNP [dm3] 2R_9997901_SNP [dm6]	T	G	3.066e^-4	0.814	INTRON Pka-R2
2R	14618027	2R_14618027_SNP [dm3] 2R_18730522_SNP [dm6]	G	A	3.077e^-4	0.814	UPSTREAM List INTRON Hs3st-A
2R	17604635	2R_17604635_SNP [dm3] 2R_21717130_SNP [dm6]	G	A	3.086e^-4	0.814	UTR_3_PRIME Tango11 UPSTREAM CG30398 DOWNSTREAM HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	14213579	3L_14213579_DEL [dm3] 3L_14220479_DEL [dm6]	TT	T	3.086e^-4	0.814	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16499887	2R_16499887_SNP [dm3] 2R_20612382_SNP [dm6]	T	C	3.090e^-4	0.814	INTRON Hil
2L	7039774	2L_7039774_DEL [dm3] 2L_7039774_DEL [dm6]	AA	A	3.092e^-4	0.814	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3505683	2L_3505683_SNP [dm3] 2L_3505683_SNP [dm6]	T	A	3.095e^-4	0.814	INTRON tim	TF binding site BDTNP1_TFBS_twi
3R	17825611	3R_17825611_DEL [dm3] 3R_21999889_DEL [dm6]	AA	A	3.100e^-4	0.814	INTRON Eip93F
X	11199026	X_11199026_SNP [dm3] X_11304993_SNP [dm6]	T	C	3.102e^-4	0.814	INTERGENIC
2L	11226245	2L_11226245_SNP [dm3] 2L_11226245_SNP [dm6]	A	C	3.109e^-4	0.814	INTRON ab	TF binding site mE1_TFBS_cad
X	17337972	X_17337972_SNP [dm3] X_17443939_SNP [dm6]	G	T	3.112e^-4	0.814	UTR_5_PRIME CG12994
2R	5699502	2R_5699502_SNP [dm3] 2R_9811997_SNP [dm6]	A	G	3.122e^-4	0.814	INTRON CG1648
2L	19652093	2L_19652093_SNP [dm3] 2L_19652093_SNP [dm6]	G	A	3.122e^-4	0.814	INTRON Lar
2L	19652094	2L_19652094_SNP [dm3] 2L_19652094_SNP [dm6]	T	C	3.122e^-4	0.814	INTRON Lar
2R	5838020	2R_5838020_DEL [dm3] 2R_9950515_DEL [dm6]	TG	T	3.130e^-4	0.815	INTRON Mef2
2L	12874547	2L_12874547_SNP [dm3] 2L_12874547_SNP [dm6]	G	C	3.135e^-4	0.815	INTERGENIC
3L	1263912	3L_1263912_SNP [dm3] 3L_1263912_SNP [dm6]	G	A	3.138e^-4	0.815	INTRON CG9134
2R	11220968	2R_11220968_SNP [dm3] 2R_15333463_SNP [dm6]	G	A	3.149e^-4	0.815	INTRON Hr51
2R	2598530	2R_2598530_SNP [dm3] 2R_6711025_SNP [dm6]	T	G	3.156e^-4	0.815	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	9560427	3R_9560427_SNP [dm3] 3R_13734705_SNP [dm6]	T	C	3.158e^-4	0.815	UPSTREAM CG34383 INTRON CG34383
2R	9915180	2R_9915180_SNP [dm3] 2R_14027675_SNP [dm6]	C	A	3.163e^-4	0.815	UPSTREAM CG18371 INTRON mam
3L	3138325	3L_3138325_SNP [dm3] 3L_3138325_SNP [dm6]	T	C	3.164e^-4	0.815	INTRON CG11537
3L	3138331	3L_3138331_SNP [dm3] 3L_3138331_SNP [dm6]	G	A	3.164e^-4	0.815	INTRON CG11537
2R	5784731	2R_5784731_SNP [dm3] 2R_9897226_SNP [dm6]	C	A	3.170e^-4	0.816	NON_SYNONYMOUS_CODING CG30007
2R	13789715	2R_13789715_SNP [dm3] 2R_17902210_SNP [dm6]	T	C	3.185e^-4	0.817	INTRON Elk
2L	504109	2L_504109_SNP [dm3] 2L_504109_SNP [dm6]	G	C	3.186e^-4	0.817	INTRON ush
2L	1194571	2L_1194571_SNP [dm3] 2L_1194571_SNP [dm6]	T	G	3.203e^-4	0.818	INTRON CG5001
X	5579218	X_5579218_SNP [dm3] X_5685185_SNP [dm6]	A	G	3.209e^-4	0.818	DOWNSTREAM CG3160 & 1 other INTERGENIC
3R	7656754	3R_7656754_SNP [dm3] 3R_11831032_SNP [dm6]	A	T	3.213e^-4	0.818	INTRON CG6959
3L	3790963	3L_3790963_SNP [dm3] 3L_3790963_SNP [dm6]	G	C	3.213e^-4	0.818	INTRON CG32264 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18801378	X_18801378_SNP [dm3] X_18907345_SNP [dm6]	T	C	3.218e^-4	0.818	INTRON CG7378
2R	7823207	2R_7823207_SNP [dm3] 2R_11935702_SNP [dm6]	A	T	3.220e^-4	0.818	INTERGENIC
2R	16388559	2R_16388559_SNP [dm3] 2R_20501054_SNP [dm6]	G	A	3.220e^-4	0.818	INTERGENIC	regulatory region REDfly_CRMs
2L	3030787	2L_3030787_SNP [dm3] 2L_3030787_SNP [dm6]	A	G	3.222e^-4	0.818	NON_SYNONYMOUS_CODING GABPI UTR_5_PRIME GABPI DOWNSTREAM CG17219 EXON CR44147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	10013361	2R_10013361_SNP [dm3] 2R_14125856_SNP [dm6]	A	C	3.226e^-4	0.818	INTRON Prosap
3R	7763496	3R_7763496_SNP [dm3] 3R_11937774_SNP [dm6]	G	A	3.231e^-4	0.818	INTRON Cad87A
2L	7093636	2L_7093636_SNP [dm3] 2L_7093636_SNP [dm6]	C	G	3.238e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	1324225	3L_1324225_SNP [dm3] 3L_1324225_SNP [dm6]	C	G	3.248e^-4	0.819	UPSTREAM Myo61F & 1 other INTRON Myo61F
2R	7721807	2R_7721807_SNP [dm3] 2R_11834302_SNP [dm6]	T	A	3.249e^-4	0.819	INTRON Sobp
2L	7016576	2L_7016576_SNP [dm3] 2L_7016576_SNP [dm6]	G	T	3.255e^-4	0.819	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
2L	11017608	2L_11017608_SNP [dm3] 2L_11017608_SNP [dm6]	C	T	3.256e^-4	0.819	NON_SYNONYMOUS_CODING CG14913 INTRON Samuel
X	16164683	X_16164683_SNP [dm3] X_16270650_SNP [dm6]	T	A	3.268e^-4	0.82	UPSTREAM Mfe2 INTRON kat80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1430193	2L_1430193_SNP [dm3] 2L_1430193_SNP [dm6]	A	G	3.271e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15073422	3L_15073422_SNP [dm3] 3L_15080322_SNP [dm6]	G	C	3.282e^-4	0.821	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	24103564	3R_24103564_SNP [dm3] 3R_28277842_SNP [dm6]	A	G	3.285e^-4	0.821	INTERGENIC
3R	10763640	3R_10763640_DEL [dm3] 3R_14937918_DEL [dm6]	GCCATAAGCCTAATCACTTT...	G	3.285e^-4	0.821	INTERGENIC
2L	5180191	2L_5180191_SNP [dm3] 2L_5180191_SNP [dm6]	C	A	3.291e^-4	0.821	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	1402580	2R_1402580_SNP [dm3] 2R_5515075_SNP [dm6]	G	A	3.297e^-4	0.821	INTRON CG30438
2R	19468472	2R_19468472_SNP [dm3] 2R_23580949_SNP [dm6]	T	C	3.307e^-4	0.823	UPSTREAM apt INTRON apt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8528806	2L_8528806_SNP [dm3] 2L_8528806_SNP [dm6]	A	C	3.311e^-4	0.823	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18252211	2R_18252211_SNP [dm3] 2R_22364706_SNP [dm6]	C	T	3.323e^-4	0.824	INTRON Liprin-gamma
3R	1058943	3R_1058943_SNP [dm3] 3R_5233221_SNP [dm6]	T	C	3.330e^-4	0.825	INTRON Mms19	TF binding site BDTNP1_TFBS_dl
2R	5784679	2R_5784679_SNP [dm3] 2R_9897174_SNP [dm6]	A	G	3.342e^-4	0.826	SYNONYMOUS_CODING CG30007
3R	10373067	3R_10373067_SNP [dm3] 3R_14547345_SNP [dm6]	C	T	3.349e^-4	0.826	INTRON Pde6
3R	13678543	3R_13678543_SNP [dm3] 3R_17852821_SNP [dm6]	C	A	3.351e^-4	0.826	INTRON tinc
3R	17646207	3R_17646207_SNP [dm3] 3R_21820485_SNP [dm6]	G	A	3.352e^-4	0.826	INTRON CASK
2L	4923506	2L_4923506_SNP [dm3] 2L_4923506_SNP [dm6]	G	A	3.366e^-4	0.827	INTRON hoe1
3R	4646955	3R_4646955_SNP [dm3] 3R_8821233_SNP [dm6]	T	A	3.368e^-4	0.827	UPSTREAM CG9821 & 1 other DOWNSTREAM CR43130 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6846480	2R_6846480_SNP [dm3] 2R_10958975_SNP [dm6]	C	T	3.373e^-4	0.827	INTERGENIC
3R	19231428	3R_19231428_SNP [dm3] 3R_23405706_SNP [dm6]	A	G	3.374e^-4	0.827	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
X	4865130	X_4865130_SNP [dm3] X_4971097_SNP [dm6]	T	A	3.377e^-4	0.827	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5710601	2R_5710601_SNP [dm3] 2R_9823096_SNP [dm6]	T	A	3.386e^-4	0.827	UTR_3_PRIME dila UPSTREAM CG30001	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_ttk
2R	19967676	2R_19967676_SNP [dm3] 2R_24080153_SNP [dm6]	C	A	3.388e^-4	0.827	SYNONYMOUS_CODING CG10339 UPSTREAM CG13564
2L	17068695	2L_17068695_SNP [dm3] 2L_17068695_SNP [dm6]	A	T	3.405e^-4	0.83	INTERGENIC
3R	10763631	3R_10763631_DEL [dm3] 3R_14937909_DEL [dm6]	TCC	T	3.413e^-4	0.83	INTERGENIC
3L	10738344	3L_10738344_SNP [dm3] 3L_10745244_SNP [dm6]	A	C	3.414e^-4	0.83	INTERGENIC
3L	2892911	3L_2892911_DEL [dm3] 3L_2892911_DEL [dm6]	CAATAC	C	3.417e^-4	0.83	UPSTREAM spz5 INTERGENIC
3R	22431699	3R_22431699_SNP [dm3] 3R_26605977_SNP [dm6]	C	G	3.429e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10763676	3R_10763676_SNP [dm3] 3R_14937954_SNP [dm6]	A	G	3.434e^-4	0.831	INTERGENIC
3R	17216474	3R_17216474_SNP [dm3] 3R_21390752_SNP [dm6]	T	A	3.448e^-4	0.831	DOWNSTREAM bap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	5701306	2R_5701306_SNP [dm3] 2R_9813801_SNP [dm6]	A	T	3.469e^-4	0.831	INTRON CG1648
X	5846790	X_5846790_SNP [dm3] X_5952757_SNP [dm6]	C	T	3.471e^-4	0.831	SYNONYMOUS_CODING CG6048
2L	14452582	2L_14452582_SNP [dm3] 2L_14452582_SNP [dm6]	G	A	3.481e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24107495	3R_24107495_SNP [dm3] 3R_28281773_SNP [dm6]	C	T	3.484e^-4	0.831	UPSTREAM CG34436 INTERGENIC
2R	18262693	2R_18262693_SNP [dm3] 2R_22375188_SNP [dm6]	G	T	3.487e^-4	0.831	START_GAINED Rtf1 UTR_5_PRIME Rtf1 UPSTREAM CR44759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8525341	2L_8525341_SNP [dm3] 2L_8525341_SNP [dm6]	C	A	3.488e^-4	0.831	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3R	22794881	3R_22794881_SNP [dm3] 3R_26969159_SNP [dm6]	C	G	3.490e^-4	0.831	INTRON CG5521
2R	10644149	2R_10644149_SNP [dm3] 2R_14756644_SNP [dm6]	G	A	3.490e^-4	0.831	SYNONYMOUS_CODING CG12859 UPSTREAM CG10151 DOWNSTREAM Trs31	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15852440	2L_15852440_SNP [dm3] 2L_15852440_SNP [dm6]	T	C	3.494e^-4	0.831	UPSTREAM CG13243 INTERGENIC
3R	14275435	3R_14275435_SNP [dm3] 3R_18449713_SNP [dm6]	G	C	3.498e^-4	0.831	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	3341936	2R_3341936_SNP [dm3] 2R_7454431_SNP [dm6]	C	T	3.503e^-4	0.831	DOWNSTREAM Inos INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9579123	3L_9579123_SNP [dm3] 3L_9586023_SNP [dm6]	G	A	3.525e^-4	0.831	INTRON CG42673
3L	9579125	3L_9579125_SNP [dm3] 3L_9586025_SNP [dm6]	G	A	3.525e^-4	0.831	INTRON CG42673
2R	1128977	2R_1128977_SNP [dm3] 2R_5241472_SNP [dm6]	A	C	3.525e^-4	0.831	INTRON Nipped-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6753909	2L_6753909_SNP [dm3] 2L_6753909_SNP [dm6]	T	A	3.527e^-4	0.831	INTRON CG11221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7030240	2L_7030240_SNP [dm3] 2L_7030240_SNP [dm6]	T	A	3.527e^-4	0.831	DOWNSTREAM Rab30 INTERGENIC
2R	13188505	2R_13188505_DEL [dm3] 2R_17301000_DEL [dm6]	GAAAGAG	G	3.529e^-4	0.831	INTRON mbl	TF binding site mE1_TFBS_inv
2R	9912881	2R_9912881_SNP [dm3] 2R_14025376_SNP [dm6]	A	G	3.530e^-4	0.831	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	477244	3L_477244_SNP [dm3] 3L_477244_SNP [dm6]	G	A	3.532e^-4	0.831	INTRON klar
2L	14572280	2L_14572280_SNP [dm3] 2L_14572280_SNP [dm6]	A	T	3.532e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8208710	X_8208710_SNP [dm3] X_8314677_SNP [dm6]	A	C	3.545e^-4	0.831	INTRON nAChRalpha3
2L	22309967	2L_22309967_SNP [dm3] 2L_22309967_SNP [dm6]	C	T	3.554e^-4	0.831	INTRON CG17018	transposable element FlyBase
2L	11585237	2L_11585237_INS [dm3] 2L_11585237_INS [dm6]	G	GTAGCACACAAA...	3.558e^-4	0.831	DOWNSTREAM Mst33A INTRON kek2
2R	2735718	2R_2735718_SNP [dm3] 2R_6848213_SNP [dm6]	A	G	3.564e^-4	0.831	INTERGENIC
2R	5704404	2R_5704404_INS [dm3] 2R_9816899_INS [dm6]	A	AG	3.575e^-4	0.831	UPSTREAM lectin-46Ca DOWNSTREAM lectin-46Cb INTRON CG1648
3L	2475131	3L_2475131_SNP [dm3] 3L_2475131_SNP [dm6]	G	T	3.579e^-4	0.831	INTRON CG45186 & 1 other
2L	8174545	2L_8174545_SNP [dm3] 2L_8174545_SNP [dm6]	A	G	3.583e^-4	0.831	SYNONYMOUS_CODING Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6989139	2R_6989139_SNP [dm3] 2R_11101634_SNP [dm6]	C	T	3.584e^-4	0.831	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22558210	3L_22558210_SNP [dm3] 3L_22565110_SNP [dm6]	G	A	3.584e^-4	0.831	INTERGENIC
3L	3506063	3L_3506063_DEL [dm3] 3L_3506063_DEL [dm6]	TC	T	3.585e^-4	0.831	DOWNSTREAM CG42324 INTRON CG42324	TF binding site mE1_TFBS_cad
X	6316976	X_6316976_SNP [dm3] X_6422943_SNP [dm6]	C	A	3.588e^-4	0.831	DOWNSTREAM CG42340 INTERGENIC
3R	19778669	3R_19778669_SNP [dm3] 3R_23952947_SNP [dm6]	G	A	3.601e^-4	0.831	SYNONYMOUS_CODING Aats-glupro	TF binding site mE1_TFBS_cad
2R	10951136	2R_10951136_SNP [dm3] 2R_15063631_SNP [dm6]	C	T	3.606e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	3021203	2L_3021203_SNP [dm3] 2L_3021203_SNP [dm6]	A	T	3.616e^-4	0.831	SYNONYMOUS_CODING CG17264 DOWNSTREAM alpha4GT1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3890993	2L_3890993_SNP [dm3] 2L_3890993_SNP [dm6]	T	G	3.618e^-4	0.831	UPSTREAM capu INTRON capu
X	3143222	X_3143222_SNP [dm3] X_3249189_SNP [dm6]	A	T	3.622e^-4	0.831	SYNONYMOUS_CODING Pig1 UPSTREAM Sgs4 INTRON dnc
X	17336190	X_17336190_SNP [dm3] X_17442157_SNP [dm6]	G	C	3.628e^-4	0.831	INTRON CG12994
3L	14554488	3L_14554488_SNP [dm3] 3L_14561388_SNP [dm6]	G	A	3.637e^-4	0.831	UPSTREAM Lk DOWNSTREAM CR44843 INTRON CG34039
3R	16575717	3R_16575717_SNP [dm3] 3R_20749995_SNP [dm6]	T	A	3.637e^-4	0.831	UPSTREAM Prosalpha4T1 INTRON CG42322	TF binding site BDTNP1_TFBS_twi
3L	2941866	3L_2941866_SNP [dm3] 3L_2941866_SNP [dm6]	T	C	3.645e^-4	0.831	INTRON Shab
3R	15100918	3R_15100918_SNP [dm3] 3R_19275196_SNP [dm6]	A	C	3.645e^-4	0.831	INTERGENIC
2L	6547410	2L_6547410_SNP [dm3] 2L_6547410_SNP [dm6]	A	G	3.647e^-4	0.831	UPSTREAM eya INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8078470	2L_8078470_SNP [dm3] 2L_8078470_SNP [dm6]	G	A	3.648e^-4	0.831	SYNONYMOUS_CODING Mcr
X	3044466	X_3044466_SNP [dm3] X_3150433_SNP [dm6]	C	T	3.653e^-4	0.831	INTRON N	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15458136	2L_15458136_SNP [dm3] 2L_15458136_SNP [dm6]	T	G	3.657e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	12452935	2L_12452935_SNP [dm3] 2L_12452935_SNP [dm6]	T	C	3.658e^-4	0.831	UPSTREAM CR17024 DOWNSTREAM Oatp33Eb INTRON CG5418	TF binding site mE1_TFBS_cad
2L	19124219	2L_19124219_SNP [dm3] 2L_19124219_SNP [dm6]	G	A	3.659e^-4	0.831	SYNONYMOUS_CODING l_2_37Cb UPSTREAM l_2_37Cc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9683528	X_9683528_SNP [dm3] X_9789495_SNP [dm6]	G	A	3.663e^-4	0.831	INTRON CG32698	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21252668	3R_21252668_SNP [dm3] 3R_25426946_SNP [dm6]	A	T	3.664e^-4	0.831	INTRON Fur1
2L	9354915	2L_9354915_SNP [dm3] 2L_9354915_SNP [dm6]	G	A	3.667e^-4	0.831	INTERGENIC
2L	5860558	2L_5860558_SNP [dm3] 2L_5860558_SNP [dm6]	A	G	3.670e^-4	0.831	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	5860530	2R_5860530_SNP [dm3] 2R_9973025_SNP [dm6]	T	C	3.682e^-4	0.831	DOWNSTREAM CG12134 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	16807416	3L_16807416_SNP [dm3] 3L_16814316_SNP [dm6]	T	A	3.687e^-4	0.831	INTRON nudC & 1 other
2R	20193568	2R_20193568_SNP [dm3] 2R_24306045_SNP [dm6]	G	A	3.692e^-4	0.831	UTR_5_PRIME betaTub60D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12878073	2L_12878073_SNP [dm3] 2L_12878073_SNP [dm6]	C	T	3.700e^-4	0.831	INTERGENIC
2R	5833273	2R_5833273_SNP [dm3] 2R_9945768_SNP [dm6]	G	A	3.716e^-4	0.831	INTRON Mef2
X	5694207	X_5694207_SNP [dm3] X_5800174_SNP [dm6]	T	G	3.718e^-4	0.831	INTERGENIC
2L	18605687	2L_18605687_SNP [dm3] 2L_18605687_SNP [dm6]	G	C	3.723e^-4	0.831	UPSTREAM CG31789 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18260884	2R_18260884_SNP [dm3] 2R_22373379_SNP [dm6]	T	C	3.731e^-4	0.831	UPSTREAM Liprin-gamma DOWNSTREAM CR44759 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8288353	3L_8288353_SNP [dm3] 3L_8295253_SNP [dm6]	T	A	3.733e^-4	0.831	UTR_5_PRIME CG7201
X	5480674	X_5480674_SNP [dm3] X_5586641_SNP [dm6]	T	C	3.739e^-4	0.831	INTERGENIC
2R	6987986	2R_6987986_SNP [dm3] 2R_11100481_SNP [dm6]	T	A	3.742e^-4	0.831	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2439989	3L_2439989_SNP [dm3] 3L_2439989_SNP [dm6]	T	C	3.744e^-4	0.831	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	11184392	2L_11184392_SNP [dm3] 2L_11184392_SNP [dm6]	T	A	3.744e^-4	0.831	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	14278069	2R_14278069_SNP [dm3] 2R_18390564_SNP [dm6]	G	C	3.761e^-4	0.831	NON_SYNONYMOUS_CODING CG15068 DOWNSTREAM CG15065
3L	3922845	3L_3922845_SNP [dm3] 3L_3922845_SNP [dm6]	T	A	3.768e^-4	0.831	INTRON Eip63F-1
3R	16349809	3R_16349809_SNP [dm3] 3R_20524087_SNP [dm6]	A	T	3.769e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_inv
3R	2310045	3R_2310045_SNP [dm3] 3R_6484323_SNP [dm6]	A	C	3.774e^-4	0.831	INTRON CG15186	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	10763629	3R_10763629_SNP [dm3] 3R_14937907_SNP [dm6]	T	G	3.776e^-4	0.831	INTERGENIC
2R	4134761	2R_4134761_SNP [dm3] 2R_8247256_SNP [dm6]	A	T	3.779e^-4	0.831	DOWNSTREAM CR44446 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	9347993	2R_9347993_SNP [dm3] 2R_13460488_SNP [dm6]	C	A	3.783e^-4	0.831	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22241080	2L_22241080_SNP [dm3] 2L_22241080_SNP [dm6]	A	C	3.784e^-4	0.831	UTR_3_PRIME CG3262 DOWNSTREAM CG3262	TF binding site mE1_TFBS_HSA
3R	13768802	3R_13768802_SNP [dm3] 3R_17943080_SNP [dm6]	G	A	3.784e^-4	0.831	INTRON cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
3L	10738354	3L_10738354_SNP [dm3] 3L_10745254_SNP [dm6]	A	T	3.792e^-4	0.831	INTERGENIC
2L	13744435	2L_13744435_SNP [dm3] 2L_13744435_SNP [dm6]	A	T	3.794e^-4	0.831	INTERGENIC
2L	13744441	2L_13744441_SNP [dm3] 2L_13744441_SNP [dm6]	A	G	3.794e^-4	0.831	INTERGENIC
2L	1629714	2L_1629714_SNP [dm3] 2L_1629714_SNP [dm6]	C	A	3.798e^-4	0.831	INTERGENIC
3R	4842088	3R_4842088_SNP [dm3] 3R_9016366_SNP [dm6]	A	C	3.801e^-4	0.831	NON_SYNONYMOUS_CODING CG11986 DOWNSTREAM tgo	TF binding site mE1_TFBS_sens
3L	2144042	3L_2144042_SNP [dm3] 3L_2144042_SNP [dm6]	T	C	3.803e^-4	0.831	INTRON zormin
3L	7082182	3L_7082182_SNP [dm3] 3L_7089082_SNP [dm6]	C	A	3.806e^-4	0.831	UPSTREAM Cpr65Eb INTERGENIC
2L	1629859	2L_1629859_SNP [dm3] 2L_1629859_SNP [dm6]	G	A	3.813e^-4	0.831	INTERGENIC
2R	11264129	2R_11264129_SNP [dm3] 2R_15376624_SNP [dm6]	A	C	3.815e^-4	0.831	UTR_3_PRIME dup UPSTREAM CR43105 & 1 other	TF binding site BDTNP1_TFBS_hb
3L	3884692	3L_3884692_SNP [dm3] 3L_3884692_SNP [dm6]	A	T	3.815e^-4	0.831	INTRON CR43917
2R	10644340	2R_10644340_SNP [dm3] 2R_14756835_SNP [dm6]	C	A	3.820e^-4	0.831	SYNONYMOUS_CODING CG12859 UPSTREAM CG10151 DOWNSTREAM Trs31	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3884695	3L_3884695_SNP [dm3] 3L_3884695_SNP [dm6]	G	A	3.827e^-4	0.831	INTRON CR43917
3L	1444133	3L_1444133_INS [dm3] 3L_1444133_INS [dm6]	T	TT	3.832e^-4	0.831	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5717075	2R_5717075_SNP [dm3] 2R_9829570_SNP [dm6]	G	A	3.839e^-4	0.831	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2227308	X_2227308_SNP [dm3] X_2333275_SNP [dm6]	C	T	3.840e^-4	0.831	UPSTREAM Ilp6 INTRON phl & 1 other	TF binding site BDTNP1_TFBS_dl
X	4860923	X_4860923_INS [dm3] X_4966890_INS [dm6]	A	AA	3.846e^-4	0.831	INTRON CR44833	regulatory region REDfly_CRMs
2R	19855000	2R_19855000_SNP [dm3] 2R_23967477_SNP [dm6]	T	C	3.850e^-4	0.831	UPSTREAM or DOWNSTREAM Alas INTRON CG34213	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6959307	3R_6959307_SNP [dm3] 3R_11133585_SNP [dm6]	A	T	3.854e^-4	0.831	INTERGENIC
2R	5868839	2R_5868839_SNP [dm3] 2R_9981334_SNP [dm6]	T	G	3.863e^-4	0.831	DOWNSTREAM eve INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	17097588	2L_17097588_SNP [dm3] 2L_17097588_SNP [dm6]	A	G	3.864e^-4	0.831	INTERGENIC
2L	5507624	2L_5507624_SNP [dm3] 2L_5507624_SNP [dm6]	T	A	3.864e^-4	0.831	INTERGENIC
2R	5740250	2R_5740250_SNP [dm3] 2R_9852745_SNP [dm6]	G	A	3.881e^-4	0.831	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_chinmo
2L	9352132	2L_9352132_SNP [dm3] 2L_9352132_SNP [dm6]	A	T	3.886e^-4	0.831	INTERGENIC
3L	12394648	3L_12394648_SNP [dm3] 3L_12401548_SNP [dm6]	T	G	3.892e^-4	0.831	SYNONYMOUS_CODING Smyd4 DOWNSTREAM CG32103	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3621316	3L_3621316_SNP [dm3] 3L_3621316_SNP [dm6]	G	A	3.893e^-4	0.831	UPSTREAM CG14974 INTERGENIC
3R	19895085	3R_19895085_SNP [dm3] 3R_24069363_SNP [dm6]	A	G	3.893e^-4	0.831	INTRON 4EHP
2R	5702819	2R_5702819_DEL [dm3] 2R_9815314_DEL [dm6]	GG	G	3.902e^-4	0.831	UPSTREAM lectin-46Cb INTRON CG1648	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	5781849	2R_5781849_SNP [dm3] 2R_9894344_SNP [dm6]	C	A	3.905e^-4	0.831	SYNONYMOUS_CODING CG30007
3L	12770194	3L_12770194_SNP [dm3] 3L_12777094_SNP [dm6]	G	C	3.907e^-4	0.831	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
3L	1916529	3L_1916529_SNP [dm3] 3L_1916529_SNP [dm6]	A	G	3.913e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2722672	2R_2722672_SNP [dm3] 2R_6835167_SNP [dm6]	A	T	3.915e^-4	0.831	DOWNSTREAM mir-4976 INTRON CG15236	TF binding site mE1_TFBS_cad
2R	1789068	2R_1789068_SNP [dm3] 2R_5901563_SNP [dm6]	T	G	3.919e^-4	0.831	INTRON CG43366	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14143072	2R_14143072_SNP [dm3] 2R_18255567_SNP [dm6]	G	A	3.922e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12449413	3L_12449413_DEL [dm3] 3L_12456313_DEL [dm6]	AGTTAA	A	3.930e^-4	0.831	INTERGENIC
3R	22431694	3R_22431694_SNP [dm3] 3R_26605972_SNP [dm6]	G	T	3.935e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12723987	X_12723987_SNP [dm3] X_12829954_SNP [dm6]	G	A	3.936e^-4	0.831	SYNONYMOUS_CODING Pde9	TF binding site mE1_TFBS_chinmo
2L	1249987	2L_1249987_SNP [dm3] 2L_1249987_SNP [dm6]	G	A	3.938e^-4	0.831	INTERGENIC
3L	9524745	3L_9524745_SNP [dm3] 3L_9531645_SNP [dm6]	C	T	3.938e^-4	0.831	DOWNSTREAM Or67a INTERGENIC
2R	19468924	2R_19468924_SNP [dm3] 2R_23581401_SNP [dm6]	C	T	3.963e^-4	0.831	UTR_5_PRIME apt INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15101131	3R_15101131_SNP [dm3] 3R_19275409_SNP [dm6]	T	C	3.963e^-4	0.831	INTERGENIC
2L	3164254	2L_3164254_SNP [dm3] 2L_3164254_SNP [dm6]	T	A	3.964e^-4	0.831	DOWNSTREAM CR31953 INTRON Hydr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11812653	3L_11812653_SNP [dm3] 3L_11819553_SNP [dm6]	A	C	3.972e^-4	0.831	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	1948126	3L_1948126_SNP [dm3] 3L_1948126_SNP [dm6]	A	G	3.974e^-4	0.831	SYNONYMOUS_CODING Cnb UPSTREAM mu2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4757710	2L_4757710_SNP [dm3] 2L_4757710_SNP [dm6]	C	T	3.978e^-4	0.831	INTRON CG15630
2L	2987126	2L_2987126_SNP [dm3] 2L_2987126_SNP [dm6]	T	C	3.981e^-4	0.831	UPSTREAM Bem46 INTRON Chd1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3R	15812336	3R_15812336_SNP [dm3] 3R_19986614_SNP [dm6]	T	C	3.987e^-4	0.831	INTRON Hs6st
X	6361145	X_6361145_SNP [dm3] X_6467112_SNP [dm6]	G	A	3.992e^-4	0.831	SYNONYMOUS_CODING CG42340 UTR_3_PRIME CG42340	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14837660	3R_14837660_SNP [dm3] 3R_19011938_SNP [dm6]	T	A	3.993e^-4	0.831	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	15457689	2L_15457689_SNP [dm3] 2L_15457689_SNP [dm6]	T	C	4.002e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	8910218	2R_8910218_DEL [dm3] 2R_13022713_DEL [dm6]	TT	T	4.003e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_sens
3R	4839899	3R_4839899_SNP [dm3] 3R_9014177_SNP [dm6]	T	C	4.006e^-4	0.831	START_GAINED CG11984 UTR_5_PRIME CG11984 UPSTREAM CG11984 DOWNSTREAM CG11985 INTRON CG11984	TF binding site BDTNP1_TFBS_dl
3R	13302963	3R_13302963_SNP [dm3] 3R_17477241_SNP [dm6]	C	T	4.011e^-4	0.831	INTRON Dscam3
2R	7672588	2R_7672588_SNP [dm3] 2R_11785083_SNP [dm6]	G	C	4.016e^-4	0.831	INTRON ths	TF binding site mE1_TFBS_cad
2R	7672598	2R_7672598_SNP [dm3] 2R_11785093_SNP [dm6]	A	T	4.016e^-4	0.831	INTRON ths	TF binding site mE1_TFBS_cad
3R	13308669	3R_13308669_SNP [dm3] 3R_17482947_SNP [dm6]	G	A	4.021e^-4	0.831	SYNONYMOUS_CODING Dscam3
X	19667125	X_19667125_SNP [dm3] X_19773092_SNP [dm6]	C	T	4.024e^-4	0.831	INTRON vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5848175	2R_5848175_SNP [dm3] 2R_9960670_SNP [dm6]	A	G	4.052e^-4	0.831	NON_SYNONYMOUS_CODING Pal1 UPSTREAM CG15863	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3138332	3L_3138332_SNP [dm3] 3L_3138332_SNP [dm6]	T	A	4.055e^-4	0.831	INTRON CG11537
2R	13133858	2R_13133858_SNP [dm3] 2R_17246353_SNP [dm6]	G	C	4.055e^-4	0.831	UPSTREAM CG18469 DOWNSTREAM CG12699 INTRON mbl
X	6126869	X_6126869_SNP [dm3] X_6232836_SNP [dm6]	T	A	4.057e^-4	0.831	UTR_3_PRIME CG14446
2R	5721038	2R_5721038_SNP [dm3] 2R_9833533_SNP [dm6]	C	A	4.059e^-4	0.831	UTR_5_PRIME hebe INTRON hebe	TF binding site mE1_TFBS_cad
X	9337734	X_9337734_SNP [dm3] X_9443701_SNP [dm6]	T	G	4.059e^-4	0.831	INTRON mgl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2259476	3R_2259476_SNP [dm3] 3R_6433754_SNP [dm6]	A	G	4.062e^-4	0.831	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2792743	3L_2792743_SNP [dm3] 3L_2792743_SNP [dm6]	G	A	4.068e^-4	0.831	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9315682	2L_9315682_SNP [dm3] 2L_9315682_SNP [dm6]	G	A	4.069e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10767340	3R_10767340_SNP [dm3] 3R_14941618_SNP [dm6]	A	C	4.071e^-4	0.831	INTERGENIC
3L	6872708	3L_6872708_SNP [dm3] 3L_6879608_SNP [dm6]	T	A	4.072e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12461984	2L_12461984_SNP [dm3] 2L_12461984_SNP [dm6]	C	A	4.078e^-4	0.831	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8032718	3L_8032718_SNP [dm3] 3L_8039618_SNP [dm6]	T	G	4.081e^-4	0.831	INTRON nmo	TF binding site mE1_TFBS_inv
2L	770147	2L_770147_SNP [dm3] 2L_770147_SNP [dm6]	T	G	4.088e^-4	0.831	INTERGENIC
2R	19468685	2R_19468685_SNP [dm3] 2R_23581162_SNP [dm6]	A	T	4.099e^-4	0.831	UTR_5_PRIME apt INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3884701	3L_3884701_SNP [dm3] 3L_3884701_SNP [dm6]	C	T	4.106e^-4	0.831	INTRON CR43917
2L	12323005	2L_12323005_SNP [dm3] 2L_12323005_SNP [dm6]	G	A	4.107e^-4	0.831	INTERGENIC
3L	4142796	3L_4142796_SNP [dm3] 3L_4142796_SNP [dm6]	C	T	4.116e^-4	0.831	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3L	4142801	3L_4142801_SNP [dm3] 3L_4142801_SNP [dm6]	G	A	4.116e^-4	0.831	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
X	8782094	X_8782094_DEL [dm3] X_8888061_DEL [dm6]	AATGT	A	4.122e^-4	0.831	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5833179	2R_5833179_SNP [dm3] 2R_9945674_SNP [dm6]	T	C	4.125e^-4	0.831	UPSTREAM Mef2 INTRON Mef2
2L	15852442	2L_15852442_SNP [dm3] 2L_15852442_SNP [dm6]	G	A	4.128e^-4	0.831	UPSTREAM CG13243 INTERGENIC
2L	9427192	2L_9427192_SNP [dm3] 2L_9427192_SNP [dm6]	T	C	4.130e^-4	0.831	SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847 DOWNSTREAM Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3006384	X_3006384_SNP [dm3] X_3112351_SNP [dm6]	A	C	4.134e^-4	0.831	INTRON kirre
3L	6431012	3L_6431012_SNP [dm3] 3L_6437912_SNP [dm6]	C	A	4.135e^-4	0.831	INTRON CG42747
2L	4622984	2L_4622984_SNP [dm3] 2L_4622984_SNP [dm6]	C	T	4.135e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13184344	2R_13184344_SNP [dm3] 2R_17296839_SNP [dm6]	C	T	4.137e^-4	0.831	INTRON mbl
2R	7888273	2R_7888273_SNP [dm3] 2R_12000768_SNP [dm6]	T	A	4.140e^-4	0.831	DOWNSTREAM otk INTERGENIC
2L	15852543	2L_15852543_INS [dm3] 2L_15852543_INS [dm6]	T	TA	4.141e^-4	0.831	UPSTREAM CG13243 INTERGENIC
3R	22844646	3R_22844646_SNP [dm3] 3R_27018924_SNP [dm6]	C	G	4.141e^-4	0.831	SYNONYMOUS_CODING CG17191 UPSTREAM CG17192 INTRON RYa-R
3L	6385232	3L_6385232_SNP [dm3] 3L_6392132_SNP [dm6]	G	A	4.144e^-4	0.831	INTERGENIC
2R	2599330	2R_2599330_SNP [dm3] 2R_6711825_SNP [dm6]	G	A	4.146e^-4	0.831	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12829544	2L_12829544_SNP [dm3] 2L_12829544_SNP [dm6]	G	A	4.161e^-4	0.831	INTERGENIC
3L	11812414	3L_11812414_SNP [dm3] 3L_11819314_SNP [dm6]	G	A	4.166e^-4	0.831	INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14261969	2L_14261969_SNP [dm3] 2L_14261969_SNP [dm6]	A	G	4.171e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2R	5741204	2R_5741204_SNP [dm3] 2R_9853699_SNP [dm6]	T	C	4.174e^-4	0.831	SYNONYMOUS_CODING CG1516 INTRON CG1516
3R	17357950	3R_17357950_SNP [dm3] 3R_21532228_SNP [dm6]	C	T	4.174e^-4	0.831	EXON CR43372
3R	17358217	3R_17358217_SNP [dm3] 3R_21532495_SNP [dm6]	G	T	4.174e^-4	0.831	EXON CR43372
3R	22194089	3R_22194089_SNP [dm3] 3R_26368367_SNP [dm6]	C	G	4.193e^-4	0.834	INTERGENIC
3L	7092000	3L_7092000_SNP [dm3] 3L_7098900_SNP [dm6]	T	C	4.205e^-4	0.834	INTRON form3
3R	19984794	3R_19984794_SNP [dm3] 3R_24159072_SNP [dm6]	T	C	4.216e^-4	0.834	INTRON Myo95E
3R	21330905	3R_21330905_SNP [dm3] 3R_25505183_SNP [dm6]	C	G	4.223e^-4	0.834	UPSTREAM CG5107 DOWNSTREAM CR45651 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12480626	3R_12480626_SNP [dm3] 3R_16654904_SNP [dm6]	T	A	4.230e^-4	0.834	INTRON modSP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	1179334	2L_1179334_SNP [dm3] 2L_1179334_SNP [dm6]	C	T	4.232e^-4	0.834	UTR_3_PRIME CG4896 INTRON CG4896	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7003229	3L_7003229_DEL [dm3] 3L_7010129_DEL [dm6]	TA	C	4.234e^-4	0.834	INTRON Mp
3R	14909619	3R_14909619_SNP [dm3] 3R_19083897_SNP [dm6]	A	G	4.236e^-4	0.834	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3278036	2L_3278036_SNP [dm3] 2L_3278036_SNP [dm6]	G	T	4.244e^-4	0.834	INTRON CG3332
2R	5720382	2R_5720382_SNP [dm3] 2R_9832877_SNP [dm6]	C	T	4.244e^-4	0.834	INTRON hebe
2L	15221690	2L_15221690_SNP [dm3] 2L_15221690_SNP [dm6]	T	C	4.252e^-4	0.834	INTERGENIC
X	18349286	X_18349286_SNP [dm3] X_18455253_SNP [dm6]	G	A	4.253e^-4	0.834	INTRON CG32547
X	18349287	X_18349287_SNP [dm3] X_18455254_SNP [dm6]	A	T	4.253e^-4	0.834	INTRON CG32547
2R	5702614	2R_5702614_SNP [dm3] 2R_9815109_SNP [dm6]	A	C	4.255e^-4	0.834	UPSTREAM lectin-46Cb INTRON CG1648	TF binding site mE1_TFBS_inv
3R	9784988	3R_9784988_SNP [dm3] 3R_13959266_SNP [dm6]	T	A	4.257e^-4	0.834	SYNONYMOUS_CODING Ipp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19667099	X_19667099_SNP [dm3] X_19773066_SNP [dm6]	T	C	4.259e^-4	0.834	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8917935	3L_8917935_SNP [dm3] 3L_8924835_SNP [dm6]	A	C	4.265e^-4	0.834	INTRON Tsp66E	TF binding site BDTNP1_TFBS_twi
3L	1324224	3L_1324224_SNP [dm3] 3L_1324224_SNP [dm6]	T	C	4.276e^-4	0.834	UPSTREAM Myo61F & 1 other INTRON Myo61F
3L	4050337	3L_4050337_SNP [dm3] 3L_4050337_SNP [dm6]	T	C	4.279e^-4	0.834	INTRON CG1136	TF binding site mE1_TFBS_inv
2R	14140611	2R_14140611_SNP [dm3] 2R_18253106_SNP [dm6]	G	A	4.279e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7941182	X_7941182_SNP [dm3] X_8047149_SNP [dm6]	T	A	4.282e^-4	0.834	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	17908189	3R_17908189_SNP [dm3] 3R_22082467_SNP [dm6]	T	C	4.293e^-4	0.834	INTRON CG13408
2L	19809150	2L_19809150_SNP [dm3] 2L_19809150_SNP [dm6]	G	C	4.294e^-4	0.834	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12581924	X_12581924_SNP [dm3] X_12687891_SNP [dm6]	C	T	4.300e^-4	0.834	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14756153	2R_14756153_SNP [dm3] 2R_18868648_SNP [dm6]	G	A	4.302e^-4	0.834	UPSTREAM CG43109 DOWNSTREAM DptB INTERGENIC
2R	15406191	2R_15406191_SNP [dm3] 2R_19518686_SNP [dm6]	A	C	4.309e^-4	0.834	UTR_3_PRIME sm
3R	6926242	3R_6926242_SNP [dm3] 3R_11100520_SNP [dm6]	G	T	4.310e^-4	0.834	UPSTREAM CR45579 INTERGENIC
2L	16646679	2L_16646679_SNP [dm3] 2L_16646679_SNP [dm6]	G	C	4.318e^-4	0.835	INTRON CG42389
3L	11048860	3L_11048860_SNP [dm3] 3L_11055760_SNP [dm6]	G	C	4.326e^-4	0.835	UTR_5_PRIME CG7888 INTRON CG7888
2R	16313373	2R_16313373_SNP [dm3] 2R_20425868_SNP [dm6]	G	A	4.328e^-4	0.835	INTRON CG12484
2R	12777826	2R_12777826_SNP [dm3] 2R_16890321_SNP [dm6]	G	C	4.332e^-4	0.835	INTRON CG8910
2R	15679900	2R_15679900_INS [dm3] 2R_19792395_INS [dm6]	A	AATTCCGA	4.335e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4902928	2L_4902928_INS [dm3] 2L_4902928_INS [dm6]	A	AGCTTA	4.355e^-4	0.836	DOWNSTREAM CG2837 INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8331752	2L_8331752_SNP [dm3] 2L_8331752_SNP [dm6]	A	C	4.364e^-4	0.836	INTRON CG14275
2R	5833346	2R_5833346_INS [dm3] 2R_9945841_INS [dm6]	A	ACA	4.365e^-4	0.836	INTRON Mef2
2L	4917917	2L_4917917_SNP [dm3] 2L_4917917_SNP [dm6]	G	T	4.365e^-4	0.836	INTRON hoe1
2L	8529275	2L_8529275_SNP [dm3] 2L_8529275_SNP [dm6]	A	G	4.369e^-4	0.836	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2R	6077599	2R_6077599_SNP [dm3] 2R_10190094_SNP [dm6]	C	T	4.372e^-4	0.836	INTRON KCNQ
2R	12706259	2R_12706259_SNP [dm3] 2R_16818754_SNP [dm6]	A	T	4.377e^-4	0.836	INTRON CR43417
2R	14612464	2R_14612464_SNP [dm3] 2R_18724959_SNP [dm6]	G	C	4.377e^-4	0.836	INTRON Hs3st-A
3L	16442280	3L_16442280_SNP [dm3] 3L_16449180_SNP [dm6]	C	A	4.379e^-4	0.836	INTRON CG33158 & 1 other
X	13339784	X_13339784_SNP [dm3] X_13445751_SNP [dm6]	T	C	4.390e^-4	0.837	UPSTREAM Neto INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	5828992	2R_5828992_SNP [dm3] 2R_9941487_SNP [dm6]	T	C	4.405e^-4	0.839	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	9621431	3L_9621431_SNP [dm3] 3L_9628331_SNP [dm6]	A	G	4.413e^-4	0.84	SYNONYMOUS_CODING Or67b UPSTREAM CG8336
3L	7091950	3L_7091950_SNP [dm3] 3L_7098850_SNP [dm6]	G	C	4.420e^-4	0.84	INTRON form3
2R	1403838	2R_1403838_SNP [dm3] 2R_5516333_SNP [dm6]	C	G	4.429e^-4	0.84	INTRON CG30438
2R	5699524	2R_5699524_SNP [dm3] 2R_9812019_SNP [dm6]	T	C	4.439e^-4	0.84	INTRON CG1648
2R	5699532	2R_5699532_SNP [dm3] 2R_9812027_SNP [dm6]	C	T	4.439e^-4	0.84	INTRON CG1648
2R	11264106	2R_11264106_SNP [dm3] 2R_15376601_SNP [dm6]	T	C	4.446e^-4	0.84	UPSTREAM CR43105 & 1 other DOWNSTREAM dup INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	23277161	3R_23277161_INS [dm3] 3R_27451439_INS [dm6]	T	TTG	4.453e^-4	0.84	INTERGENIC
3R	24123448	3R_24123448_SNP [dm3] 3R_28297726_SNP [dm6]	C	A	4.458e^-4	0.84	INTERGENIC
2R	16917335	2R_16917335_SNP [dm3] 2R_21029830_SNP [dm6]	T	A	4.470e^-4	0.84	INTRON CR45148
2L	8499174	2L_8499174_SNP [dm3] 2L_8499174_SNP [dm6]	A	T	4.473e^-4	0.84	INTRON Dh31
2R	5774276	2R_5774276_SNP [dm3] 2R_9886771_SNP [dm6]	T	G	4.473e^-4	0.84	UPSTREAM CG1513 & 1 other INTRON CG1513
2L	2495149	2L_2495149_SNP [dm3] 2L_2495149_SNP [dm6]	T	G	4.480e^-4	0.84	INTRON oaf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12849849	2R_12849849_DEL [dm3] 2R_16962344_DEL [dm6]	ATTGAGCTTATA...	A	4.485e^-4	0.84	INTERGENIC
3L	11813530	3L_11813530_SNP [dm3] 3L_11820430_SNP [dm6]	C	A	4.493e^-4	0.84	UTR_3_PRIME CG11597 UPSTREAM CG5946 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	16695697	2R_16695697_SNP [dm3] 2R_20808192_SNP [dm6]	C	T	4.495e^-4	0.84	INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

Cuticul_x_C22_1_l2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results