DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.580e^-21)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	1.162e-07

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1856 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6395533	3L_6395533_SNP [dm3] 3L_6402433_SNP [dm6]	G	A	8.045e^-7	0.528	INTRON CG42747
3L	9137472	3L_9137472_SNP [dm3] 3L_9144372_SNP [dm6]	A	G	1.141e^-6	0.528	UTR_3_PRIME nwk UPSTREAM mir-4940 INTRON nwk	TF binding site mE1_TFBS_cad
3L	6396334	3L_6396334_SNP [dm3] 3L_6403234_SNP [dm6]	G	C	1.455e^-6	0.528	INTRON CG42747
2L	14261781	2L_14261781_SNP [dm3] 2L_14261781_SNP [dm6]	C	T	1.682e^-6	0.528	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	3396440	2L_3396440_SNP [dm3] 2L_3396440_SNP [dm6]	G	A	1.744e^-6	0.528	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14172296	2R_14172296_SNP [dm3] 2R_18284791_SNP [dm6]	G	A	1.995e^-6	0.528	DOWNSTREAM sbb INTRON sbb
2R	14172307	2R_14172307_SNP [dm3] 2R_18284802_SNP [dm6]	T	A	2.153e^-6	0.528	DOWNSTREAM sbb INTRON sbb
2L	9189335	2L_9189335_SNP [dm3] 2L_9189335_SNP [dm6]	A	G	2.409e^-6	0.528	INTRON tai
3R	19233693	3R_19233693_SNP [dm3] 3R_23407971_SNP [dm6]	G	C	2.805e^-6	0.528	DOWNSTREAM Ir94e & 1 other INTERGENIC
3R	26505170	3R_26505170_SNP [dm3] 3R_30679448_SNP [dm6]	C	T	2.816e^-6	0.528	INTERGENIC
3L	6396976	3L_6396976_SNP [dm3] 3L_6403876_SNP [dm6]	G	A	4.055e^-6	0.581	INTRON CG42747
3L	6396908	3L_6396908_SNP [dm3] 3L_6403808_SNP [dm6]	T	A	4.286e^-6	0.581	INTRON CG42747
2R	14168901	2R_14168901_SNP [dm3] 2R_18281396_SNP [dm6]	A	G	4.612e^-6	0.581	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10993028	3L_10993028_SNP [dm3] 3L_10999928_SNP [dm6]	C	G	4.620e^-6	0.581	INTRON klu	TF binding site mE1_TFBS_chinmo
X	10809680	X_10809680_SNP [dm3] X_10915647_SNP [dm6]	C	T	5.248e^-6	0.581	NON_SYNONYMOUS_CODING CG43901 INTRON CG43901	TF binding site mE1_TFBS_chinmo
3L	6428359	3L_6428359_SNP [dm3] 3L_6435259_SNP [dm6]	C	A	5.847e^-6	0.581	INTRON CG42747	TF binding site mE1_TFBS_cad
3R	8083272	3R_8083272_SNP [dm3] 3R_12257550_SNP [dm6]	C	T	5.949e^-6	0.581	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	20367863	2R_20367863_SNP [dm3] 2R_24480340_SNP [dm6]	A	G	6.044e^-6	0.581	INTRON CG13579
2L	10522784	2L_10522784_SNP [dm3] 2L_10522784_SNP [dm6]	T	C	6.387e^-6	0.581	INTERGENIC
3R	12183010	3R_12183010_SNP [dm3] 3R_16357288_SNP [dm6]	G	A	6.551e^-6	0.581	UPSTREAM CG10311 DOWNSTREAM CG17931 & 1 other INTERGENIC
3L	6396814	3L_6396814_SNP [dm3] 3L_6403714_SNP [dm6]	T	A	6.625e^-6	0.581	INTRON CG42747
3L	14499583	3L_14499583_SNP [dm3] 3L_14506483_SNP [dm6]	C	T	6.845e^-6	0.581	INTRON bbg
3R	8083034	3R_8083034_SNP [dm3] 3R_12257312_SNP [dm6]	A	T	7.518e^-6	0.581	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	2699663	3R_2699663_SNP [dm3] 3R_6873941_SNP [dm6]	T	A	8.080e^-6	0.581	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2R	8488375	2R_8488375_SNP [dm3] 2R_12600870_SNP [dm6]	A	G	8.149e^-6	0.581	INTRON Amph
2L	7889248	2L_7889248_DEL [dm3] 2L_7889248_DEL [dm6]	AA	A	8.184e^-6	0.581	UPSTREAM Spn28Da DOWNSTREAM Spn28Db INTERGENIC
3R	25818024	3R_25818024_SNP [dm3] 3R_29992302_SNP [dm6]	A	G	8.539e^-6	0.581	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10522791	2L_10522791_SNP [dm3] 2L_10522791_SNP [dm6]	T	C	8.674e^-6	0.581	INTERGENIC
2R	20366150	2R_20366150_SNP [dm3] 2R_24478627_SNP [dm6]	C	T	9.248e^-6	0.593	INTRON CG13579
2L	10522627	2L_10522627_SNP [dm3] 2L_10522627_SNP [dm6]	T	A	9.484e^-6	0.593	INTERGENIC
2L	7432047	2L_7432047_SNP [dm3] 2L_7432047_SNP [dm6]	G	A	9.997e^-6	0.596	INTRON CG5958
2L	14261742	2L_14261742_SNP [dm3] 2L_14261742_SNP [dm6]	G	A	1.017e^-5	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	19233781	3R_19233781_SNP [dm3] 3R_23408059_SNP [dm6]	T	A	1.144e^-5	0.609	DOWNSTREAM Ir94e & 1 other INTERGENIC
2L	9388194	2L_9388194_SNP [dm3] 2L_9388194_SNP [dm6]	T	G	1.203e^-5	0.609	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9476418	X_9476418_SNP [dm3] X_9582385_SNP [dm6]	C	G	1.207e^-5	0.609	UPSTREAM CR45540 INTERGENIC
2L	10522680	2L_10522680_SNP [dm3] 2L_10522680_SNP [dm6]	C	G	1.255e^-5	0.609	INTERGENIC
2L	16009717	2L_16009717_SNP [dm3] 2L_16009717_SNP [dm6]	A	T	1.264e^-5	0.609	INTRON beat-Ic
3L	6395626	3L_6395626_SNP [dm3] 3L_6402526_SNP [dm6]	A	T	1.270e^-5	0.609	INTRON CG42747
3L	6396662	3L_6396662_SNP [dm3] 3L_6403562_SNP [dm6]	A	G	1.272e^-5	0.609	INTRON CG42747
X	9476371	X_9476371_SNP [dm3] X_9582338_SNP [dm6]	T	C	1.347e^-5	0.609	UPSTREAM CR45540 INTERGENIC
X	9476185	X_9476185_SNP [dm3] X_9582152_SNP [dm6]	G	A	1.350e^-5	0.609	UPSTREAM CR45540 INTERGENIC
2L	3396448	2L_3396448_SNP [dm3] 2L_3396448_SNP [dm6]	A	G	1.364e^-5	0.609	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12349774	3L_12349774_DEL [dm3] 3L_12356674_DEL [dm6]	TT	C	1.399e^-5	0.61	INTERGENIC
3L	4253709	3L_4253709_SNP [dm3] 3L_4253709_SNP [dm6]	C	T	1.499e^-5	0.617	INTRON ago	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6964351	2R_6964351_SNP [dm3] 2R_11076846_SNP [dm6]	C	A	1.504e^-5	0.617	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1522160	3R_1522160_SNP [dm3] 3R_5696438_SNP [dm6]	T	C	1.538e^-5	0.617	INTRON plx	TF binding site mE1_TFBS_cad
3R	21455530	3R_21455530_SNP [dm3] 3R_25629808_SNP [dm6]	T	A	1.545e^-5	0.617	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	6396925	3L_6396925_SNP [dm3] 3L_6403825_SNP [dm6]	A	T	1.678e^-5	0.646	INTRON CG42747
3R	21683721	3R_21683721_SNP [dm3] 3R_25857999_SNP [dm6]	T	C	1.741e^-5	0.646	INTRON CG5890
X	9365936	X_9365936_SNP [dm3] X_9471903_SNP [dm6]	A	G	1.756e^-5	0.646	INTRON mgl	TF binding site mE1_TFBS_chinmo
2R	6963982	2R_6963982_SNP [dm3] 2R_11076477_SNP [dm6]	C	T	1.784e^-5	0.646	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16287739	2R_16287739_SNP [dm3] 2R_20400234_SNP [dm6]	G	C	1.790e^-5	0.646	INTERGENIC
X	9476270	X_9476270_SNP [dm3] X_9582237_SNP [dm6]	A	G	1.971e^-5	0.674	UPSTREAM CR45540 INTERGENIC
2R	20361643	2R_20361643_SNP [dm3] 2R_24474120_SNP [dm6]	C	A	2.021e^-5	0.674	UTR_3_PRIME CG3492 UPSTREAM CG3494 INTRON CG13579	TF binding site mE1_TFBS_HSA
3L	12561460	3L_12561460_SNP [dm3] 3L_12568360_SNP [dm6]	C	A	2.052e^-5	0.674	INTRON sowah
2L	15308167	2L_15308167_SNP [dm3] 2L_15308167_SNP [dm6]	T	C	2.055e^-5	0.674	INTERGENIC
3R	23450665	3R_23450665_SNP [dm3] 3R_27624943_SNP [dm6]	C	T	2.090e^-5	0.674	INTRON Tusp & 1 other
X	9476378	X_9476378_SNP [dm3] X_9582345_SNP [dm6]	G	A	2.094e^-5	0.674	UPSTREAM CR45540 INTERGENIC
2R	15422395	2R_15422395_SNP [dm3] 2R_19534890_SNP [dm6]	A	G	2.120e^-5	0.674	INTRON sm
3R	9295726	3R_9295726_SNP [dm3] 3R_13470004_SNP [dm6]	C	T	2.169e^-5	0.678	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10522675	2L_10522675_SNP [dm3] 2L_10522675_SNP [dm6]	G	T	2.240e^-5	0.689	INTERGENIC
2L	9532049	2L_9532049_SNP [dm3] 2L_9532049_SNP [dm6]	T	A	2.313e^-5	0.7	INTRON Oatp30B
2R	13001518	2R_13001518_SNP [dm3] 2R_17114013_SNP [dm6]	A	G	2.505e^-5	0.702	SYNONYMOUS_CODING CG15611	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10625290	X_10625290_DEL [dm3] X_10731257_DEL [dm6]	AAA	G	2.553e^-5	0.702	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6964043	2R_6964043_SNP [dm3] 2R_11076538_SNP [dm6]	A	C	2.570e^-5	0.702	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7219527	3L_7219527_SNP [dm3] 3L_7226427_SNP [dm6]	T	A	2.593e^-5	0.702	INTERGENIC
X	12379812	X_12379812_SNP [dm3] X_12485779_SNP [dm6]	C	G	2.618e^-5	0.702	INTERGENIC
3R	23516107	3R_23516107_SNP [dm3] 3R_27690385_SNP [dm6]	T	C	2.628e^-5	0.702	INTRON CG12880	TF binding site mE1_TFBS_chinmo
3L	13165443	3L_13165443_SNP [dm3] 3L_13172343_SNP [dm6]	G	A	2.677e^-5	0.702	INTERGENIC
2L	14261635	2L_14261635_SNP [dm3] 2L_14261635_SNP [dm6]	A	T	2.679e^-5	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	20365330	2R_20365330_SNP [dm3] 2R_24477807_SNP [dm6]	C	T	2.718e^-5	0.702	INTRON CG13579	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8076537	3R_8076537_SNP [dm3] 3R_12250815_SNP [dm6]	G	C	2.741e^-5	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9476412	X_9476412_SNP [dm3] X_9582379_SNP [dm6]	T	A	2.742e^-5	0.702	UPSTREAM CR45540 INTERGENIC
2L	15014658	2L_15014658_SNP [dm3] 2L_15014658_SNP [dm6]	T	C	2.828e^-5	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6677360	2R_6677360_SNP [dm3] 2R_10789855_SNP [dm6]	G	A	2.842e^-5	0.702	INTRON CG33144	TF binding site mE1_TFBS_inv
2L	14261767	2L_14261767_SNP [dm3] 2L_14261767_SNP [dm6]	G	A	2.846e^-5	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	4469767	2L_4469767_SNP [dm3] 2L_4469767_SNP [dm6]	C	T	2.882e^-5	0.702	SPLICE_SITE_REGION ine SYNONYMOUS_CODING ine	TF binding site mE1_TFBS_cad
3L	16069946	3L_16069946_SNP [dm3] 3L_16076846_SNP [dm6]	G	T	2.931e^-5	0.705	INTRON Mbs
X	11534543	X_11534543_SNP [dm3] X_11640510_SNP [dm6]	C	A	3.102e^-5	0.725	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl
2R	7262550	2R_7262550_SNP [dm3] 2R_11375045_SNP [dm6]	G	A	3.113e^-5	0.725	UPSTREAM CG13203 INTRON CG13203	TF binding site mE1_TFBS_chinmo
3R	8341839	3R_8341839_DEL [dm3] 3R_12516117_DEL [dm6]	AGGAACTTAAATACACAATT...	A	3.130e^-5	0.725	INTRON Octbeta3R
2L	10522651	2L_10522651_SNP [dm3] 2L_10522651_SNP [dm6]	A	C	3.205e^-5	0.729	INTERGENIC
3R	16861822	3R_16861822_SNP [dm3] 3R_21036100_SNP [dm6]	C	G	3.288e^-5	0.729	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3222190	3R_3222190_SNP [dm3] 3R_7396468_SNP [dm6]	A	C	3.358e^-5	0.729	INTERGENIC
2R	14172510	2R_14172510_SNP [dm3] 2R_18285005_SNP [dm6]	T	A	3.362e^-5	0.729	DOWNSTREAM sbb INTRON sbb
3L	571533	3L_571533_SNP [dm3] 3L_571533_SNP [dm6]	G	C	3.381e^-5	0.729	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	571587	3L_571587_SNP [dm3] 3L_571587_SNP [dm6]	T	G	3.381e^-5	0.729	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9177011	3R_9177011_SNP [dm3] 3R_13351289_SNP [dm6]	A	C	3.575e^-5	0.75	INTERGENIC
3R	17916325	3R_17916325_SNP [dm3] 3R_22090603_SNP [dm6]	G	T	3.654e^-5	0.75	INTRON CG5778
3R	17941018	3R_17941018_SNP [dm3] 3R_22115296_SNP [dm6]	C	G	3.657e^-5	0.75	DOWNSTREAM Ir94b & 1 other INTERGENIC
2L	7889290	2L_7889290_SNP [dm3] 2L_7889290_SNP [dm6]	G	A	3.678e^-5	0.75	UTR_3_PRIME Spn28Db UPSTREAM Spn28Da
2L	7889291	2L_7889291_SNP [dm3] 2L_7889291_SNP [dm6]	A	T	3.678e^-5	0.75	UTR_3_PRIME Spn28Db UPSTREAM Spn28Da
3R	23512652	3R_23512652_DEL [dm3] 3R_27686930_DEL [dm6]	CTTC	C	3.744e^-5	0.754	SPLICE_SITE_REGION CG31055 INTRON CG12880 & 1 other	TF binding site mE1_TFBS_chinmo
2L	4815276	2L_4815276_SNP [dm3] 2L_4815276_SNP [dm6]	T	C	3.781e^-5	0.754	SYNONYMOUS_CODING CG15629 DOWNSTREAM CG3225
2R	15312160	2R_15312160_SNP [dm3] 2R_19424655_SNP [dm6]	G	C	3.818e^-5	0.754	UPSTREAM CalpA & 1 other INTRON hts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	4878527	X_4878527_SNP [dm3] X_4984494_SNP [dm6]	G	A	3.923e^-5	0.754	INTRON CR44833	regulatory region REDfly_CRMs
3L	12245050	3L_12245050_SNP [dm3] 3L_12251950_SNP [dm6]	C	T	4.006e^-5	0.754	INTRON app
2L	12568598	2L_12568598_SNP [dm3] 2L_12568598_SNP [dm6]	C	A	4.066e^-5	0.754	INTERGENIC
3R	19233775	3R_19233775_SNP [dm3] 3R_23408053_SNP [dm6]	T	C	4.094e^-5	0.754	DOWNSTREAM Ir94e & 1 other INTERGENIC
2L	10522609	2L_10522609_SNP [dm3] 2L_10522609_SNP [dm6]	T	C	4.096e^-5	0.754	INTERGENIC
2R	14286032	2R_14286032_SNP [dm3] 2R_18398527_SNP [dm6]	G	T	4.105e^-5	0.754	NON_SYNONYMOUS_CODING GstE1 UPSTREAM GstE2 & 1 other
3R	26512811	3R_26512811_SNP [dm3] 3R_30687089_SNP [dm6]	C	A	4.112e^-5	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5880929	2L_5880929_SNP [dm3] 2L_5880929_SNP [dm6]	C	A	4.143e^-5	0.754	INTERGENIC	TF binding site mE1_TFBS_sens
2R	17136545	2R_17136545_DEL [dm3] 2R_21249040_DEL [dm6]	AA	A	4.272e^-5	0.764	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14261779	2L_14261779_SNP [dm3] 2L_14261779_SNP [dm6]	C	G	4.279e^-5	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	3396588	2L_3396588_SNP [dm3] 2L_3396588_SNP [dm6]	G	A	4.360e^-5	0.765	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	4463463	3R_4463463_SNP [dm3] 3R_8637741_SNP [dm6]	G	A	4.366e^-5	0.765	INTERGENIC
3L	7219525	3L_7219525_SNP [dm3] 3L_7226425_SNP [dm6]	T	G	4.490e^-5	0.78	INTERGENIC
3R	23450660	3R_23450660_SNP [dm3] 3R_27624938_SNP [dm6]	T	C	4.567e^-5	0.78	INTRON Tusp & 1 other
2L	5880846	2L_5880846_SNP [dm3] 2L_5880846_SNP [dm6]	G	A	4.607e^-5	0.78	INTERGENIC
2L	9532056	2L_9532056_SNP [dm3] 2L_9532056_SNP [dm6]	A	G	4.613e^-5	0.78	INTRON Oatp30B
2L	10699807	2L_10699807_SNP [dm3] 2L_10699807_SNP [dm6]	G	A	4.723e^-5	0.782	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad
2L	10522579	2L_10522579_SNP [dm3] 2L_10522579_SNP [dm6]	T	C	4.771e^-5	0.782	INTERGENIC
2L	9812445	2L_9812445_SNP [dm3] 2L_9812445_SNP [dm6]	G	A	4.792e^-5	0.782	INTRON nAChRalpha6
3R	9676392	3R_9676392_SNP [dm3] 3R_13850670_SNP [dm6]	G	A	4.792e^-5	0.782	INTERGENIC
2R	20367528	2R_20367528_DEL [dm3] 2R_24480005_DEL [dm6]	TCTCTCATCT	T	4.882e^-5	0.788	INTRON CG13579
2L	10522660	2L_10522660_SNP [dm3] 2L_10522660_SNP [dm6]	T	C	4.942e^-5	0.788	INTERGENIC
3L	6433847	3L_6433847_SNP [dm3] 3L_6440747_SNP [dm6]	A	C	4.960e^-5	0.788	INTRON CG42747
3L	1376291	3L_1376291_SNP [dm3] 3L_1376291_SNP [dm6]	C	T	5.066e^-5	0.791	INTRON Ptp61F & 1 other
2R	20359547	2R_20359547_SNP [dm3] 2R_24472024_SNP [dm6]	G	C	5.074e^-5	0.791	UPSTREAM CG3492 INTRON CG13579
2R	6964352	2R_6964352_SNP [dm3] 2R_11076847_SNP [dm6]	C	G	5.121e^-5	0.791	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19135807	2R_19135807_SNP [dm3] 2R_23248284_SNP [dm6]	A	G	5.147e^-5	0.791	UPSTREAM RpL22-like INTERGENIC
3L	12245051	3L_12245051_SNP [dm3] 3L_12251951_SNP [dm6]	C	T	5.216e^-5	0.791	INTRON app
2L	3085158	2L_3085158_SNP [dm3] 2L_3085158_SNP [dm6]	G	T	5.345e^-5	0.791	INTRON toc
X	9476474	X_9476474_SNP [dm3] X_9582441_SNP [dm6]	G	A	5.389e^-5	0.791	UPSTREAM CR45540 INTERGENIC
3R	26512851	3R_26512851_SNP [dm3] 3R_30687129_SNP [dm6]	T	A	5.400e^-5	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10982579	X_10982579_SNP [dm3] X_11088546_SNP [dm6]	C	T	5.478e^-5	0.791	UPSTREAM Vago DOWNSTREAM CR45604 INTERGENIC
3L	16069920	3L_16069920_INS [dm3] 3L_16076820_INS [dm6]	T	TTCAAA	5.506e^-5	0.791	INTRON Mbs
3L	16070024	3L_16070024_SNP [dm3] 3L_16076924_SNP [dm6]	C	A	5.517e^-5	0.791	INTRON Mbs
2R	10866771	2R_10866771_DEL [dm3] 2R_14979266_DEL [dm6]	AATG	A	5.520e^-5	0.791		TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	2868404	X_2868404_SNP [dm3] X_2974371_SNP [dm6]	A	G	5.538e^-5	0.791	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17143254	2R_17143254_SNP [dm3] 2R_21255749_SNP [dm6]	C	G	5.570e^-5	0.791	UTR_5_PRIME Rgk3 UPSTREAM Rgk3
2L	14865403	2L_14865403_SNP [dm3] 2L_14865403_SNP [dm6]	C	A	5.642e^-5	0.795	INTERGENIC
X	10117181	X_10117181_SNP [dm3] X_10223148_SNP [dm6]	T	C	5.678e^-5	0.795	SYNONYMOUS_CODING CG34408 INTRON CG34408
3L	16069951	3L_16069951_SNP [dm3] 3L_16076851_SNP [dm6]	T	A	5.774e^-5	0.798	INTRON Mbs
2R	5272359	2R_5272359_SNP [dm3] 2R_9384854_SNP [dm6]	C	T	5.788e^-5	0.798	INTRON CG13954
3L	13165349	3L_13165349_SNP [dm3] 3L_13172249_SNP [dm6]	C	T	5.869e^-5	0.804	INTERGENIC
2L	388585	2L_388585_DEL [dm3] 2L_388585_DEL [dm6]	TGGGAAAT	T	5.924e^-5	0.805	INTERGENIC
3L	742118	3L_742118_SNP [dm3] 3L_742118_SNP [dm6]	C	A	6.022e^-5	0.807	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9576805	2L_9576805_SNP [dm3] 2L_9576805_SNP [dm6]	A	T	6.070e^-5	0.807	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	8083342	3R_8083342_SNP [dm3] 3R_12257620_SNP [dm6]	G	C	6.117e^-5	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6964045	2R_6964045_SNP [dm3] 2R_11076540_SNP [dm6]	C	G	6.122e^-5	0.807	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9844088	2L_9844088_SNP [dm3] 2L_9844088_SNP [dm6]	C	G	6.154e^-5	0.807	INTRON nAChRalpha6
3L	727396	3L_727396_SNP [dm3] 3L_727396_SNP [dm6]	C	T	6.230e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_sens
3L	16314107	3L_16314107_SNP [dm3] 3L_16321007_SNP [dm6]	A	G	6.254e^-5	0.809	NON_SYNONYMOUS_CODING CG42718 DOWNSTREAM CG13060
2R	17143259	2R_17143259_SNP [dm3] 2R_21255754_SNP [dm6]	C	G	6.298e^-5	0.809	UTR_5_PRIME Rgk3 UPSTREAM Rgk3
X	9476377	X_9476377_SNP [dm3] X_9582344_SNP [dm6]	T	A	6.343e^-5	0.809	UPSTREAM CR45540 INTERGENIC
2L	3678687	2L_3678687_SNP [dm3] 2L_3678687_SNP [dm6]	G	A	6.407e^-5	0.812	INTRON CG34340
3L	10745406	3L_10745406_SNP [dm3] 3L_10752306_SNP [dm6]	T	C	6.528e^-5	0.816	INTERGENIC
3L	9045558	3L_9045558_SNP [dm3] 3L_9052458_SNP [dm6]	A	T	6.558e^-5	0.816	UPSTREAM Argk INTRON Argk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2485494	2L_2485494_SNP [dm3] 2L_2485494_SNP [dm6]	G	A	6.597e^-5	0.816	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	20362698	2R_20362698_SNP [dm3] 2R_24475175_SNP [dm6]	T	C	6.648e^-5	0.816	SYNONYMOUS_CODING CG3494 UPSTREAM CG16837 DOWNSTREAM CG3492 INTRON CG13579
3R	26513130	3R_26513130_SNP [dm3] 3R_30687408_SNP [dm6]	G	A	6.689e^-5	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8464561	3L_8464561_DEL [dm3] 3L_8471461_DEL [dm6]	TT	T	6.696e^-5	0.816	UTR_3_PRIME Gug
3R	8083232	3R_8083232_SNP [dm3] 3R_12257510_SNP [dm6]	T	A	6.838e^-5	0.825	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	16009872	2L_16009872_SNP [dm3] 2L_16009872_SNP [dm6]	A	C	6.959e^-5	0.825	INTRON beat-Ic
2R	20359092	2R_20359092_SNP [dm3] 2R_24471569_SNP [dm6]	T	A	7.014e^-5	0.825	INTRON CG13579
3L	9592505	3L_9592505_SNP [dm3] 3L_9599405_SNP [dm6]	C	G	7.086e^-5	0.825	SYNONYMOUS_CODING CG3222	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4997281	2L_4997281_SNP [dm3] 2L_4997281_SNP [dm6]	A	G	7.117e^-5	0.825	UTR_5_PRIME Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	9435012	2L_9435012_SNP [dm3] 2L_9435012_SNP [dm6]	T	A	7.134e^-5	0.825	UTR_3_PRIME scat UPSTREAM CG3769	TF binding site mE1_TFBS_cad
3L	949862	3L_949862_SNP [dm3] 3L_949862_SNP [dm6]	C	G	7.167e^-5	0.825	INTRON Glut1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	12353994	3L_12353994_SNP [dm3] 3L_12360894_SNP [dm6]	C	T	7.185e^-5	0.825	INTERGENIC
3L	6396416	3L_6396416_SNP [dm3] 3L_6403316_SNP [dm6]	G	A	7.205e^-5	0.825	INTRON CG42747
2L	3435288	2L_3435288_SNP [dm3] 2L_3435288_SNP [dm6]	T	G	7.214e^-5	0.825	INTERGENIC
2L	4896797	2L_4896797_SNP [dm3] 2L_4896797_SNP [dm6]	A	T	7.341e^-5	0.834	INTRON CG3036
3R	25792211	3R_25792211_SNP [dm3] 3R_29966489_SNP [dm6]	C	G	7.377e^-5	0.834	INTRON TkR99D
3R	1522149	3R_1522149_SNP [dm3] 3R_5696427_SNP [dm6]	A	C	7.509e^-5	0.843	INTRON plx	TF binding site mE1_TFBS_cad
3R	23537152	3R_23537152_SNP [dm3] 3R_27711430_SNP [dm6]	T	C	7.879e^-5	0.87	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9576778	2L_9576778_SNP [dm3] 2L_9576778_SNP [dm6]	T	C	7.907e^-5	0.87	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16411852	3L_16411852_SNP [dm3] 3L_16418752_SNP [dm6]	A	G	8.021e^-5	0.87	SYNONYMOUS_CODING Aats-tyr UPSTREAM CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16740192	3L_16740192_SNP [dm3] 3L_16747092_SNP [dm6]	C	T	8.023e^-5	0.87	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3084068	X_3084068_SNP [dm3] X_3190035_SNP [dm6]	G	A	8.080e^-5	0.87	UTR_5_PRIME dnc INTRON dnc	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	13912078	3L_13912078_SNP [dm3] 3L_13918978_SNP [dm6]	C	G	8.131e^-5	0.87	INTRON Rgl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15007726	3R_15007726_SNP [dm3] 3R_19182004_SNP [dm6]	C	A	8.143e^-5	0.87	INTRON CG31475
2R	15132532	2R_15132532_SNP [dm3] 2R_19245027_SNP [dm6]	T	C	8.176e^-5	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	16294534	2R_16294534_SNP [dm3] 2R_20407029_SNP [dm6]	A	C	8.190e^-5	0.87	INTERGENIC
2L	264124	2L_264124_SNP [dm3] 2L_264124_SNP [dm6]	C	G	8.251e^-5	0.87	NON_SYNONYMOUS_CODING CG17075 INTRON CG3645	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6660111	2R_6660111_SNP [dm3] 2R_10772606_SNP [dm6]	C	T	8.287e^-5	0.87	INTRON CG33144
3L	16069916	3L_16069916_MNP [dm3] 3L_16076816_MNP [dm6]	AGT	GCA	8.310e^-5	0.87	INTRON Mbs
3L	16740189	3L_16740189_SNP [dm3] 3L_16747089_SNP [dm6]	G	A	8.352e^-5	0.87	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26505192	3R_26505192_SNP [dm3] 3R_30679470_SNP [dm6]	A	C	8.540e^-5	0.885	INTERGENIC
2L	3396541	2L_3396541_SNP [dm3] 2L_3396541_SNP [dm6]	T	A	8.631e^-5	0.888	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12222860	3R_12222860_SNP [dm3] 3R_16397138_SNP [dm6]	A	C	8.961e^-5	0.888	INTRON ss	regulatory region REDfly_CRMs
2L	15153286	2L_15153286_SNP [dm3] 2L_15153286_SNP [dm6]	T	G	9.061e^-5	0.888	INTERGENIC
X	20396997	X_20396997_DEL [dm3] X_20525970_DEL [dm6]	TA	T	9.074e^-5	0.888	INTERGENIC	transposable element FlyBase
2R	14362981	2R_14362981_SNP [dm3] 2R_18475476_SNP [dm6]	A	G	9.155e^-5	0.888	INTRON CG30116
X	7354741	X_7354741_SNP [dm3] X_7460708_SNP [dm6]	A	T	9.161e^-5	0.888	EXON CR44500
2R	19233280	2R_19233280_SNP [dm3] 2R_23345757_SNP [dm6]	C	G	9.193e^-5	0.888	UPSTREAM CG9863 INTRON CG3502	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20363917	2R_20363917_SNP [dm3] 2R_24476394_SNP [dm6]	G	A	9.249e^-5	0.888	DOWNSTREAM CG16837 INTRON CG13579
3L	735620	3L_735620_SNP [dm3] 3L_735620_SNP [dm6]	G	T	9.250e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14281357	2L_14281357_SNP [dm3] 2L_14281357_SNP [dm6]	A	G	9.257e^-5	0.888	INTRON wb	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	13681879	2L_13681879_SNP [dm3] 2L_13681879_SNP [dm6]	T	A	9.302e^-5	0.888	INTRON CG31814
3L	16069985	3L_16069985_SNP [dm3] 3L_16076885_SNP [dm6]	G	A	9.533e^-5	0.888	INTRON Mbs
3L	17468576	3L_17468576_SNP [dm3] 3L_17475476_SNP [dm6]	C	T	9.580e^-5	0.888	SYNONYMOUS_CODING CG7580 UPSTREAM CG34250 DOWNSTREAM CG7589	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1101609	2L_1101609_SNP [dm3] 2L_1101609_SNP [dm6]	T	C	9.581e^-5	0.888	INTRON CG4629
2R	7262554	2R_7262554_SNP [dm3] 2R_11375049_SNP [dm6]	G	C	9.591e^-5	0.888	UPSTREAM CG13203 INTRON CG13203	TF binding site mE1_TFBS_chinmo
3R	26087341	3R_26087341_SNP [dm3] 3R_30261619_SNP [dm6]	A	T	9.601e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	20362725	2R_20362725_SNP [dm3] 2R_24475202_SNP [dm6]	A	G	9.652e^-5	0.888	UTR_3_PRIME CG3494 UPSTREAM CG16837 DOWNSTREAM CG3492 INTRON CG13579
2L	3396445	2L_3396445_SNP [dm3] 2L_3396445_SNP [dm6]	C	T	9.677e^-5	0.888	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	388673	2L_388673_SNP [dm3] 2L_388673_SNP [dm6]	T	G	9.790e^-5	0.888	INTERGENIC
2R	17143258	2R_17143258_SNP [dm3] 2R_21255753_SNP [dm6]	A	T	9.826e^-5	0.888	UTR_5_PRIME Rgk3 UPSTREAM Rgk3
2L	5066314	2L_5066314_SNP [dm3] 2L_5066314_SNP [dm6]	A	C	9.828e^-5	0.888	INTRON qtc
3L	10203165	3L_10203165_SNP [dm3] 3L_10210065_SNP [dm6]	A	G	9.842e^-5	0.888	INTERGENIC
2R	16376228	2R_16376228_SNP [dm3] 2R_20488723_SNP [dm6]	T	C	9.978e^-5	0.888	INTERGENIC
3L	13173667	3L_13173667_SNP [dm3] 3L_13180567_SNP [dm6]	A	C	9.986e^-5	0.888	INTERGENIC
3R	21683761	3R_21683761_SNP [dm3] 3R_25858039_SNP [dm6]	C	T	1.000e^-4	0.888	INTRON CG5890
2R	19135803	2R_19135803_SNP [dm3] 2R_23248280_SNP [dm6]	C	T	1.003e^-4	0.888	UPSTREAM RpL22-like INTERGENIC
2L	7432008	2L_7432008_SNP [dm3] 2L_7432008_SNP [dm6]	C	T	1.008e^-4	0.888	INTRON CG5958
X	9706750	X_9706750_SNP [dm3] X_9812717_SNP [dm6]	C	G	1.019e^-4	0.888	INTRON CG32698
2R	9008369	2R_9008369_SNP [dm3] 2R_13120864_SNP [dm6]	C	T	1.027e^-4	0.888	INTRON CG13325
3R	3996894	3R_3996894_SNP [dm3] 3R_8171172_SNP [dm6]	C	T	1.029e^-4	0.888	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	20366119	2R_20366119_SNP [dm3] 2R_24478596_SNP [dm6]	C	T	1.030e^-4	0.888	INTRON CG13579
3R	18841918	3R_18841918_SNP [dm3] 3R_23016196_SNP [dm6]	T	C	1.043e^-4	0.888	DOWNSTREAM CG6688 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	22592496	3L_22592496_SNP [dm3] 3L_22599396_SNP [dm6]	T	C	1.050e^-4	0.888	INTRON CG14459	TF binding site mE1_TFBS_cad
2L	7431719	2L_7431719_SNP [dm3] 2L_7431719_SNP [dm6]	G	C	1.059e^-4	0.888	INTRON CG5958
2L	5709920	2L_5709920_SNP [dm3] 2L_5709920_SNP [dm6]	T	G	1.063e^-4	0.888	UPSTREAM CG7236 INTRON CG7236
3L	5491280	3L_5491280_SNP [dm3] 3L_5498180_SNP [dm6]	A	C	1.064e^-4	0.888	SYNONYMOUS_CODING blanks	TF binding site mE1_TFBS_cnc
3L	1096537	3L_1096537_SNP [dm3] 3L_1096537_SNP [dm6]	A	T	1.065e^-4	0.888	INTRON bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	12698724	2R_12698724_SNP [dm3] 2R_16811219_SNP [dm6]	A	T	1.073e^-4	0.888	DOWNSTREAM CR44465 INTERGENIC
3L	9322361	3L_9322361_DEL [dm3] 3L_9329261_DEL [dm6]	ACTCCGATTCTCGGCCGGGG...	A	1.076e^-4	0.888	INTERGENIC
2L	10699735	2L_10699735_SNP [dm3] 2L_10699735_SNP [dm6]	G	A	1.080e^-4	0.888	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad
2L	6191054	2L_6191054_SNP [dm3] 2L_6191054_SNP [dm6]	T	G	1.081e^-4	0.888	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	10702840	2L_10702840_SNP [dm3] 2L_10702840_SNP [dm6]	A	G	1.099e^-4	0.888	UPSTREAM CG6415 INTRON Lip2
3L	10325118	3L_10325118_SNP [dm3] 3L_10332018_SNP [dm6]	C	G	1.100e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv
2L	8619173	2L_8619173_INS [dm3] 2L_8619173_INS [dm6]	G	GT	1.105e^-4	0.888	UPSTREAM tRNA:CR31602 INTRON Sema-1a
3R	18842357	3R_18842357_SNP [dm3] 3R_23016635_SNP [dm6]	G	T	1.111e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	12698797	2R_12698797_SNP [dm3] 2R_16811292_SNP [dm6]	G	T	1.116e^-4	0.888	UPSTREAM CR44379 DOWNSTREAM CR44465 INTERGENIC
3R	21455526	3R_21455526_SNP [dm3] 3R_25629804_SNP [dm6]	C	A	1.116e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	26505012	3R_26505012_SNP [dm3] 3R_30679290_SNP [dm6]	C	T	1.122e^-4	0.888	INTERGENIC
2L	15014646	2L_15014646_SNP [dm3] 2L_15014646_SNP [dm6]	A	G	1.122e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1462107	2L_1462107_SNP [dm3] 2L_1462107_SNP [dm6]	C	A	1.131e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6396124	3L_6396124_SNP [dm3] 3L_6403024_SNP [dm6]	A	G	1.134e^-4	0.888	INTRON CG42747
X	9476732	X_9476732_INS [dm3] X_9582699_INS [dm6]	A	ACATA	1.142e^-4	0.888	UPSTREAM CR45540 INTERGENIC
3R	19254583	3R_19254583_SNP [dm3] 3R_23428861_SNP [dm6]	T	G	1.145e^-4	0.888	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
X	8434498	X_8434498_SNP [dm3] X_8540465_SNP [dm6]	A	T	1.149e^-4	0.888	INTRON Nrg
3R	8076534	3R_8076534_SNP [dm3] 3R_12250812_SNP [dm6]	T	C	1.152e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18635235	2R_18635235_SNP [dm3] 2R_22747730_SNP [dm6]	A	T	1.156e^-4	0.888	INTRON CG42260	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16069969	3L_16069969_SNP [dm3] 3L_16076869_SNP [dm6]	C	T	1.157e^-4	0.888	INTRON Mbs
3L	16740175	3L_16740175_SNP [dm3] 3L_16747075_SNP [dm6]	G	A	1.163e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9207621	2L_9207621_SNP [dm3] 2L_9207621_SNP [dm6]	C	T	1.168e^-4	0.888	INTRON tai
3R	17908575	3R_17908575_SNP [dm3] 3R_22082853_SNP [dm6]	C	G	1.170e^-4	0.888	INTRON CG13408
2L	15014598	2L_15014598_SNP [dm3] 2L_15014598_SNP [dm6]	T	A	1.172e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16760416	2R_16760416_INS [dm3] 2R_20872911_INS [dm6]	T	TT	1.176e^-4	0.888	INTRON Ipk1	TF binding site mE1_TFBS_cad
3L	7702481	3L_7702481_SNP [dm3] 3L_7709381_SNP [dm6]	A	T	1.177e^-4	0.888	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3917688	3L_3917688_SNP [dm3] 3L_3917688_SNP [dm6]	A	T	1.181e^-4	0.888	INTRON Eip63F-1
3L	16414168	3L_16414168_SNP [dm3] 3L_16421068_SNP [dm6]	T	G	1.185e^-4	0.888	SYNONYMOUS_CODING CG33158	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	22557897	3L_22557897_DEL [dm3] 3L_22564797_DEL [dm6]	CC	C	1.187e^-4	0.888	INTERGENIC
3R	10871052	3R_10871052_DEL [dm3] 3R_15045330_DEL [dm6]	TC	T	1.193e^-4	0.888	INTERGENIC
3L	2702878	3L_2702878_SNP [dm3] 3L_2702878_SNP [dm6]	A	C	1.194e^-4	0.888	INTRON Fife
3R	9420219	3R_9420219_SNP [dm3] 3R_13594497_SNP [dm6]	T	G	1.201e^-4	0.888	INTERGENIC
3R	5214297	3R_5214297_INS [dm3] 3R_9388575_INS [dm6]	T	TT	1.202e^-4	0.888	INTRON FER
X	13468538	X_13468538_SNP [dm3] X_13574505_SNP [dm6]	T	C	1.207e^-4	0.888	INTRON Tango13
3L	17468261	3L_17468261_SNP [dm3] 3L_17475161_SNP [dm6]	A	G	1.210e^-4	0.888	DOWNSTREAM CG7589 INTRON CG7580	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad
3L	12157252	3L_12157252_SNP [dm3] 3L_12164152_SNP [dm6]	C	T	1.212e^-4	0.888	UPSTREAM CG9760 DOWNSTREAM Rh7 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9820942	3R_9820942_SNP [dm3] 3R_13995220_SNP [dm6]	A	T	1.215e^-4	0.888	INTRON rdx
3L	16069923	3L_16069923_SNP [dm3] 3L_16076823_SNP [dm6]	G	A	1.226e^-4	0.888	INTRON Mbs
3R	26512832	3R_26512832_SNP [dm3] 3R_30687110_SNP [dm6]	T	C	1.227e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15422083	2R_15422083_SNP [dm3] 2R_19534578_SNP [dm6]	A	C	1.234e^-4	0.888	INTRON sm
3R	17912327	3R_17912327_SNP [dm3] 3R_22086605_SNP [dm6]	C	T	1.236e^-4	0.888	UPSTREAM CG5791 & 1 other INTRON CG5778
3L	16740183	3L_16740183_SNP [dm3] 3L_16747083_SNP [dm6]	A	G	1.243e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9576780	2L_9576780_SNP [dm3] 2L_9576780_SNP [dm6]	C	T	1.256e^-4	0.888	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19232634	2R_19232634_SNP [dm3] 2R_23345111_SNP [dm6]	T	C	1.258e^-4	0.888	NON_SYNONYMOUS_CODING CG3502
2L	8281383	2L_8281383_SNP [dm3] 2L_8281383_SNP [dm6]	G	T	1.262e^-4	0.888	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6490804	3L_6490804_SNP [dm3] 3L_6497704_SNP [dm6]	C	T	1.264e^-4	0.888	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	19429149	3L_19429149_SNP [dm3] 3L_19436049_SNP [dm6]	T	A	1.265e^-4	0.888	INTERGENIC
3L	19429147	3L_19429147_SNP [dm3] 3L_19436047_SNP [dm6]	C	A	1.268e^-4	0.888	INTERGENIC
3R	3243856	3R_3243856_SNP [dm3] 3R_7418134_SNP [dm6]	C	T	1.269e^-4	0.888	UPSTREAM CG31544 INTERGENIC
2L	3396784	2L_3396784_SNP [dm3] 2L_3396784_SNP [dm6]	T	G	1.271e^-4	0.888	DOWNSTREAM CR44792 INTERGENIC
2R	20371274	2R_20371274_SNP [dm3] 2R_24483751_SNP [dm6]	T	C	1.274e^-4	0.888	INTRON CG13579
2L	15513223	2L_15513223_DEL [dm3] 2L_15513223_DEL [dm6]	ATGTGT	G	1.312e^-4	0.898	INTERGENIC
2L	10959706	2L_10959706_SNP [dm3] 2L_10959706_SNP [dm6]	T	A	1.321e^-4	0.898	INTRON dpr2
3L	4307584	3L_4307584_SNP [dm3] 3L_4307584_SNP [dm6]	G	T	1.325e^-4	0.898	UTR_5_PRIME dyl
3L	17476771	3L_17476771_SNP [dm3] 3L_17483671_SNP [dm6]	A	G	1.334e^-4	0.898	INTRON CG6333
2L	2485481	2L_2485481_DEL [dm3] 2L_2485481_DEL [dm6]	AA	C	1.350e^-4	0.898	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	14156655	2R_14156655_SNP [dm3] 2R_18269150_SNP [dm6]	G	T	1.353e^-4	0.898	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16403972	3L_16403972_SNP [dm3] 3L_16410872_SNP [dm6]	C	A	1.354e^-4	0.898	INTRON fax	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	19375942	2L_19375942_SNP [dm3] 2L_19375942_SNP [dm6]	C	A	1.363e^-4	0.898	INTERGENIC	TF binding site mE1_TFBS_HSA
X	8434529	X_8434529_SNP [dm3] X_8540496_SNP [dm6]	G	A	1.379e^-4	0.898	INTRON Nrg
3R	23490177	3R_23490177_SNP [dm3] 3R_27664455_SNP [dm6]	A	G	1.379e^-4	0.898	INTRON unc80	TF binding site mE1_TFBS_cad
2R	17595659	2R_17595659_SNP [dm3] 2R_21708154_SNP [dm6]	A	G	1.383e^-4	0.898	UPSTREAM HmgZ DOWNSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19233294	2R_19233294_SNP [dm3] 2R_23345771_SNP [dm6]	C	T	1.389e^-4	0.898	UPSTREAM CG9863 INTRON CG3502	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8353044	3R_8353044_SNP [dm3] 3R_12527322_SNP [dm6]	C	T	1.391e^-4	0.898	INTRON Octbeta3R & 1 other
2R	14877532	2R_14877532_SNP [dm3] 2R_18990027_SNP [dm6]	T	A	1.396e^-4	0.898	INTRON tn
3L	22547578	3L_22547578_DEL [dm3] 3L_22554478_DEL [dm6]	CAAATATCCATTAGGATGAA...	C	1.406e^-4	0.898	INTERGENIC
2L	12719777	2L_12719777_SNP [dm3] 2L_12719777_SNP [dm6]	C	A	1.414e^-4	0.898	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19846322	2R_19846322_SNP [dm3] 2R_23958799_SNP [dm6]	C	T	1.415e^-4	0.898	SYNONYMOUS_CODING alpha-catenin-related	TF binding site mE1_TFBS_chinmo
3L	7611382	3L_7611382_SNP [dm3] 3L_7618282_SNP [dm6]	A	G	1.417e^-4	0.898	INTRON CG33275
3L	5960381	3L_5960381_SNP [dm3] 3L_5967281_SNP [dm6]	C	T	1.421e^-4	0.898	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	740760	3L_740760_SNP [dm3] 3L_740760_SNP [dm6]	A	G	1.422e^-4	0.898	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3R	23512640	3R_23512640_MNP [dm3] 3R_27686918_MNP [dm6]	TCCG	CTTT	1.422e^-4	0.898	INTRON CG12880 & 1 other	TF binding site mE1_TFBS_chinmo
3R	14740104	3R_14740104_SNP [dm3] 3R_18914382_SNP [dm6]	G	T	1.425e^-4	0.898	UPSTREAM Xrp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	2546369	X_2546369_SNP [dm3] X_2652336_SNP [dm6]	G	C	1.426e^-4	0.898	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17143852	2R_17143852_SNP [dm3] 2R_21256347_SNP [dm6]	T	C	1.429e^-4	0.898	INTRON Rgk3
2R	20368597	2R_20368597_SNP [dm3] 2R_24481074_SNP [dm6]	A	G	1.429e^-4	0.898	INTRON CG13579	TF binding site mE1_TFBS_chinmo
3L	22548198	3L_22548198_SNP [dm3] 3L_22555098_SNP [dm6]	T	A	1.430e^-4	0.898	INTERGENIC
3R	8560723	3R_8560723_SNP [dm3] 3R_12735001_SNP [dm6]	C	A	1.433e^-4	0.898	INTERGENIC
2L	9844071	2L_9844071_SNP [dm3] 2L_9844071_SNP [dm6]	T	C	1.433e^-4	0.898	INTRON nAChRalpha6
3L	18545495	3L_18545495_SNP [dm3] 3L_18552395_SNP [dm6]	A	T	1.440e^-4	0.898	INTERGENIC
2L	16009854	2L_16009854_SNP [dm3] 2L_16009854_SNP [dm6]	T	G	1.440e^-4	0.898	INTRON beat-Ic
2L	9576761	2L_9576761_SNP [dm3] 2L_9576761_SNP [dm6]	G	A	1.444e^-4	0.898	START_GAINED Mtpalpha UTR_5_PRIME Mtpalpha	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
X	2503646	X_2503646_SNP [dm3] X_2609613_SNP [dm6]	A	G	1.444e^-4	0.898	SYNONYMOUS_CODING CG8636 UPSTREAM Bzd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6562922	3L_6562922_SNP [dm3] 3L_6569822_SNP [dm6]	A	G	1.445e^-4	0.898	INTRON CG18769 & 1 other
2R	20362715	2R_20362715_SNP [dm3] 2R_24475192_SNP [dm6]	A	G	1.474e^-4	0.9	UTR_3_PRIME CG3494 UPSTREAM CG16837 DOWNSTREAM CG3492 INTRON CG13579
2R	12698725	2R_12698725_SNP [dm3] 2R_16811220_SNP [dm6]	G	T	1.474e^-4	0.9	DOWNSTREAM CR44465 INTERGENIC
X	11496915	X_11496915_DEL [dm3] X_11602882_DEL [dm6]	AGGGACTTTC	A	1.477e^-4	0.9	DOWNSTREAM CG2533 INTRON rho-4
3R	20498059	3R_20498059_SNP [dm3] 3R_24672337_SNP [dm6]	C	T	1.482e^-4	0.9	INTRON slo
2L	9621702	2L_9621702_SNP [dm3] 2L_9621702_SNP [dm6]	T	A	1.483e^-4	0.9	SYNONYMOUS_CODING GlcAT-S
X	10903527	X_10903527_SNP [dm3] X_11009494_SNP [dm6]	A	C	1.484e^-4	0.9	INTRON CG42339
3L	14373142	3L_14373142_SNP [dm3] 3L_14380042_SNP [dm6]	G	A	1.487e^-4	0.9	INTERGENIC
2R	15422150	2R_15422150_SNP [dm3] 2R_19534645_SNP [dm6]	C	G	1.488e^-4	0.9	INTRON sm
2R	16297602	2R_16297602_SNP [dm3] 2R_20410097_SNP [dm6]	A	G	1.499e^-4	0.904	INTERGENIC
2L	1838341	2L_1838341_SNP [dm3] 2L_1838341_SNP [dm6]	G	C	1.517e^-4	0.907	INTRON wry
3L	14498308	3L_14498308_SNP [dm3] 3L_14505208_SNP [dm6]	C	G	1.519e^-4	0.907	INTRON bbg
2R	12687854	2R_12687854_SNP [dm3] 2R_16800349_SNP [dm6]	T	C	1.524e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	6674037	2R_6674037_SNP [dm3] 2R_10786532_SNP [dm6]	T	C	1.536e^-4	0.907	UPSTREAM CR44300 & 1 other DOWNSTREAM CR44299 INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	582018	3L_582018_SNP [dm3] 3L_582018_SNP [dm6]	C	G	1.539e^-4	0.907	SYNONYMOUS_CODING Ppm1 DOWNSTREAM hipk & 1 other
3L	14938430	3L_14938430_SNP [dm3] 3L_14945330_SNP [dm6]	A	T	1.543e^-4	0.907	UPSTREAM CG13465 DOWNSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	8928540	2R_8928540_SNP [dm3] 2R_13041035_SNP [dm6]	C	A	1.545e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17149158	2R_17149158_SNP [dm3] 2R_21261653_SNP [dm6]	G	A	1.551e^-4	0.907	INTRON Rgk3
2L	3085086	2L_3085086_SNP [dm3] 2L_3085086_SNP [dm6]	C	T	1.551e^-4	0.907	INTRON toc
3R	20125776	3R_20125776_SNP [dm3] 3R_24300054_SNP [dm6]	T	C	1.553e^-4	0.907	INTRON crb	TF binding site BDTNP1_TFBS_dl
3L	14403092	3L_14403092_SNP [dm3] 3L_14409992_SNP [dm6]	G	A	1.563e^-4	0.909	UPSTREAM CG3919 & 1 other DOWNSTREAM CR45233 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	949899	3L_949899_SNP [dm3] 3L_949899_SNP [dm6]	G	T	1.571e^-4	0.909	INTRON Glut1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	12134699	2R_12134699_SNP [dm3] 2R_16247194_SNP [dm6]	C	A	1.577e^-4	0.909	INTRON CngA
2L	14865404	2L_14865404_SNP [dm3] 2L_14865404_SNP [dm6]	C	A	1.578e^-4	0.909	INTERGENIC
3L	10242272	3L_10242272_SNP [dm3] 3L_10249172_SNP [dm6]	A	C	1.582e^-4	0.909	UPSTREAM CR44540 INTERGENIC
2L	9576758	2L_9576758_SNP [dm3] 2L_9576758_SNP [dm6]	T	C	1.584e^-4	0.909	UTR_5_PRIME Mtpalpha	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3L	619506	3L_619506_SNP [dm3] 3L_619506_SNP [dm6]	G	A	1.592e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
3L	19429155	3L_19429155_SNP [dm3] 3L_19436055_SNP [dm6]	C	T	1.606e^-4	0.916	INTERGENIC
2R	6964112	2R_6964112_SNP [dm3] 2R_11076607_SNP [dm6]	G	A	1.618e^-4	0.916	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2458891	X_2458891_SNP [dm3] X_2564858_SNP [dm6]	T	A	1.634e^-4	0.916	INTRON Pdfr
2L	2485484	2L_2485484_SNP [dm3] 2L_2485484_SNP [dm6]	A	T	1.635e^-4	0.916	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	8928543	2R_8928543_SNP [dm3] 2R_13041038_SNP [dm6]	T	C	1.637e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22280225	3R_22280225_SNP [dm3] 3R_26454503_SNP [dm6]	C	T	1.654e^-4	0.916	UTR_3_PRIME CG5447 UPSTREAM CG43117 DOWNSTREAM Pdf
2R	13259423	2R_13259423_SNP [dm3] 2R_17371918_SNP [dm6]	C	G	1.672e^-4	0.916	INTRON mbl
2R	20362347	2R_20362347_SNP [dm3] 2R_24474824_SNP [dm6]	C	T	1.681e^-4	0.916	SYNONYMOUS_CODING CG3494 UPSTREAM CG16837 DOWNSTREAM CG3492 INTRON CG13579
3R	26514626	3R_26514626_SNP [dm3] 3R_30688904_SNP [dm6]	C	T	1.683e^-4	0.916	INTERGENIC
3L	16740252	3L_16740252_DEL [dm3] 3L_16747152_DEL [dm6]	GC	T	1.685e^-4	0.916	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14285981	2R_14285981_SNP [dm3] 2R_18398476_SNP [dm6]	C	A	1.690e^-4	0.916	SYNONYMOUS_CODING GstE1 UPSTREAM GstE10 INTRON GstE10
3L	727360	3L_727360_SNP [dm3] 3L_727360_SNP [dm6]	A	G	1.698e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_sens
3L	17468711	3L_17468711_SNP [dm3] 3L_17475611_SNP [dm6]	G	A	1.700e^-4	0.916	UPSTREAM CG34250 INTRON CG7580	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	13703238	2L_13703238_SNP [dm3] 2L_13703238_SNP [dm6]	C	T	1.703e^-4	0.916	INTRON CG31814
3R	3222193	3R_3222193_SNP [dm3] 3R_7396471_SNP [dm6]	A	T	1.703e^-4	0.916	INTERGENIC
2R	14155909	2R_14155909_SNP [dm3] 2R_18268404_SNP [dm6]	G	A	1.704e^-4	0.916	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19135804	2R_19135804_SNP [dm3] 2R_23248281_SNP [dm6]	C	G	1.706e^-4	0.916	UPSTREAM RpL22-like INTERGENIC
X	2538166	X_2538166_SNP [dm3] X_2644133_SNP [dm6]	A	T	1.708e^-4	0.916	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19722498	3R_19722498_SNP [dm3] 3R_23896776_SNP [dm6]	C	A	1.710e^-4	0.916	SYNONYMOUS_CODING sba INTRON sba
3L	18354570	3L_18354570_SNP [dm3] 3L_18361470_SNP [dm6]	T	A	1.716e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	9621299	2L_9621299_SNP [dm3] 2L_9621299_SNP [dm6]	A	G	1.720e^-4	0.916	SYNONYMOUS_CODING GlcAT-S
2R	14193682	2R_14193682_SNP [dm3] 2R_18306177_SNP [dm6]	T	G	1.736e^-4	0.916	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
2R	13822330	2R_13822330_SNP [dm3] 2R_17934825_SNP [dm6]	A	G	1.743e^-4	0.916	INTERGENIC
2L	2485487	2L_2485487_SNP [dm3] 2L_2485487_SNP [dm6]	C	T	1.745e^-4	0.916	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
X	3729848	X_3729848_SNP [dm3] X_3835815_SNP [dm6]	T	C	1.753e^-4	0.916	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15412796	2L_15412796_SNP [dm3] 2L_15412796_SNP [dm6]	T	A	1.760e^-4	0.916	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16740260	3L_16740260_SNP [dm3] 3L_16747160_SNP [dm6]	A	T	1.774e^-4	0.916	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	16740230	3L_16740230_DEL [dm3] 3L_16747130_DEL [dm6]	ATAGT	A	1.775e^-4	0.916	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12561242	3L_12561242_SNP [dm3] 3L_12568142_SNP [dm6]	G	T	1.780e^-4	0.916	INTRON sowah
3R	26505251	3R_26505251_SNP [dm3] 3R_30679529_SNP [dm6]	C	T	1.796e^-4	0.916	INTERGENIC
X	3089562	X_3089562_SNP [dm3] X_3195529_SNP [dm6]	G	A	1.796e^-4	0.916	INTRON dnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18599471	3R_18599471_DEL [dm3] 3R_22773749_DEL [dm6]	CCC	C	1.797e^-4	0.916	UPSTREAM mir-4953 INTRON Usp12-46 & 1 other
X	8435407	X_8435407_SNP [dm3] X_8541374_SNP [dm6]	T	A	1.805e^-4	0.916	INTRON Nrg
2L	16622959	2L_16622959_SNP [dm3] 2L_16622959_SNP [dm6]	C	T	1.812e^-4	0.916	INTRON CG42389
2R	20359995	2R_20359995_DEL [dm3] 2R_24472472_DEL [dm6]	ATGTACGCATA...	A	1.813e^-4	0.916	UPSTREAM CG3492 INTRON CG13579
2L	11981033	2L_11981033_SNP [dm3] 2L_11981033_SNP [dm6]	C	G	1.819e^-4	0.916	UPSTREAM CG16965 INTERGENIC
3R	17909789	3R_17909789_SNP [dm3] 3R_22084067_SNP [dm6]	C	T	1.822e^-4	0.916	DOWNSTREAM CG13408 INTERGENIC
2L	15014648	2L_15014648_SNP [dm3] 2L_15014648_SNP [dm6]	T	A	1.825e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15014712	2L_15014712_SNP [dm3] 2L_15014712_SNP [dm6]	A	C	1.830e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13165488	3L_13165488_INS [dm3] 3L_13172388_INS [dm6]	C	CT	1.831e^-4	0.916	INTERGENIC
3R	22278640	3R_22278640_SNP [dm3] 3R_26452918_SNP [dm6]	A	T	1.831e^-4	0.916	NON_SYNONYMOUS_CODING CG5447 DOWNSTREAM Hex-t2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18897161	3R_18897161_SNP [dm3] 3R_23071439_SNP [dm6]	C	G	1.831e^-4	0.916	UTR_3_PRIME CG13830
3L	1288372	3L_1288372_SNP [dm3] 3L_1288372_SNP [dm6]	G	C	1.842e^-4	0.916	DOWNSTREAM CG32333 INTRON CG32333
2L	5646230	2L_5646230_SNP [dm3] 2L_5646230_SNP [dm6]	G	C	1.848e^-4	0.916	INTRON CG31646	TF binding site mE1_TFBS_inv
3R	26505155	3R_26505155_SNP [dm3] 3R_30679433_SNP [dm6]	C	T	1.863e^-4	0.916	INTERGENIC
3R	8047119	3R_8047119_SNP [dm3] 3R_12221397_SNP [dm6]	G	T	1.867e^-4	0.916	UPSTREAM CG10014 INTRON CG4860	TF binding site mE1_TFBS_chinmo
3L	6812466	3L_6812466_SNP [dm3] 3L_6819366_SNP [dm6]	C	T	1.873e^-4	0.916	INTERGENIC
X	10909493	X_10909493_SNP [dm3] X_11015460_SNP [dm6]	C	G	1.873e^-4	0.916	INTRON CG42339	TF binding site mE1_TFBS_inv
2R	18932280	2R_18932280_SNP [dm3] 2R_23044757_SNP [dm6]	T	G	1.880e^-4	0.916	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	10324338	3L_10324338_SNP [dm3] 3L_10331238_SNP [dm6]	T	G	1.895e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	3642695	2R_3642695_SNP [dm3] 2R_7755190_SNP [dm6]	A	T	1.895e^-4	0.916	INTRON CG30497 & 1 other
3R	7748044	3R_7748044_SNP [dm3] 3R_11922322_SNP [dm6]	C	T	1.897e^-4	0.916	INTRON Cad87A
2R	12698749	2R_12698749_SNP [dm3] 2R_16811244_SNP [dm6]	A	C	1.899e^-4	0.916	DOWNSTREAM CR44465 INTERGENIC
3R	23533568	3R_23533568_SNP [dm3] 3R_27707846_SNP [dm6]	A	G	1.900e^-4	0.916	SYNONYMOUS_CODING CG12877	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	22543352	3L_22543352_SNP [dm3] 3L_22550252_SNP [dm6]	G	A	1.902e^-4	0.916	UTR_5_PRIME Trxr-2 DOWNSTREAM CG11404	TF binding site mE1_TFBS_cad
2R	14929922	2R_14929922_SNP [dm3] 2R_19042417_SNP [dm6]	G	C	1.906e^-4	0.916	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6397791	3L_6397791_SNP [dm3] 3L_6404691_SNP [dm6]	T	G	1.914e^-4	0.916	INTRON CG42747
3L	4307605	3L_4307605_SNP [dm3] 3L_4307605_SNP [dm6]	G	C	1.919e^-4	0.916	UTR_5_PRIME dyl
3L	16740257	3L_16740257_DEL [dm3] 3L_16747157_DEL [dm6]	AA	T	1.922e^-4	0.916	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18528113	2R_18528113_SNP [dm3] 2R_22640608_SNP [dm6]	T	A	1.922e^-4	0.916	UTR_3_PRIME RpS24 UPSTREAM CG3732	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	8077974	3L_8077974_SNP [dm3] 3L_8084874_SNP [dm6]	C	T	1.924e^-4	0.916	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
2L	2485490	2L_2485490_SNP [dm3] 2L_2485490_SNP [dm6]	A	T	1.925e^-4	0.916	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	19147779	2R_19147779_INS [dm3] 2R_23260256_INS [dm6]	C	CA	1.931e^-4	0.916	INTERGENIC
3R	14740093	3R_14740093_SNP [dm3] 3R_18914371_SNP [dm6]	T	G	1.937e^-4	0.916	UPSTREAM Xrp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	20362726	2R_20362726_SNP [dm3] 2R_24475203_SNP [dm6]	A	T	1.941e^-4	0.916	UTR_3_PRIME CG3494 UPSTREAM CG16837 DOWNSTREAM CG3492 INTRON CG13579
2R	20366332	2R_20366332_SNP [dm3] 2R_24478809_SNP [dm6]	C	A	1.942e^-4	0.916	INTRON CG13579
3R	9340236	3R_9340236_INS [dm3] 3R_13514514_INS [dm6]	T	TT	1.958e^-4	0.916	INTERGENIC
3R	23363231	3R_23363231_SNP [dm3] 3R_27537509_SNP [dm6]	A	T	1.959e^-4	0.916	UPSTREAM CR44288 EXON CR44289
2L	2485514	2L_2485514_SNP [dm3] 2L_2485514_SNP [dm6]	A	C	1.961e^-4	0.916	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	2819594	2L_2819594_SNP [dm3] 2L_2819594_SNP [dm6]	A	T	1.963e^-4	0.916	INTRON Duox	TF binding site mE1_TFBS_cad
2L	2764460	2L_2764460_SNP [dm3] 2L_2764460_SNP [dm6]	C	T	1.968e^-4	0.916	DOWNSTREAM Trn-SR INTRON CG3077	TF binding site mE1_TFBS_HSA
3R	27022187	3R_27022187_SNP [dm3] 3R_31196465_SNP [dm6]	G	T	1.968e^-4	0.916	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13812577	2L_13812577_SNP [dm3] 2L_13812577_SNP [dm6]	G	A	1.969e^-4	0.916	SYNONYMOUS_CODING CG16865 DOWNSTREAM CG16888	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	2543739	3L_2543739_SNP [dm3] 3L_2543739_SNP [dm6]	G	C	1.976e^-4	0.916	INTRON Spn
3R	9340229	3R_9340229_SNP [dm3] 3R_13514507_SNP [dm6]	C	T	1.981e^-4	0.916	INTERGENIC
X	3239226	X_3239226_SNP [dm3] X_3345193_SNP [dm6]	A	T	1.984e^-4	0.916	INTRON CR44886	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15077112	2L_15077112_SNP [dm3] 2L_15077112_SNP [dm6]	G	T	1.986e^-4	0.916	INTRON CG15270
3L	1551606	3L_1551606_SNP [dm3] 3L_1551606_SNP [dm6]	C	T	1.989e^-4	0.916	SYNONYMOUS_CODING Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15007725	3R_15007725_SNP [dm3] 3R_19182003_SNP [dm6]	C	T	1.990e^-4	0.916	INTRON CG31475
2R	19846331	2R_19846331_SNP [dm3] 2R_23958808_SNP [dm6]	A	G	2.003e^-4	0.916	SYNONYMOUS_CODING alpha-catenin-related	TF binding site mE1_TFBS_chinmo
2R	5210965	2R_5210965_SNP [dm3] 2R_9323460_SNP [dm6]	T	A	2.011e^-4	0.916	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9727544	X_9727544_SNP [dm3] X_9833511_SNP [dm6]	G	A	2.025e^-4	0.916	INTRON CG32698
X	14753800	X_14753800_SNP [dm3] X_14859767_SNP [dm6]	G	T	2.033e^-4	0.916	INTRON Flo2
3L	727460	3L_727460_SNP [dm3] 3L_727460_SNP [dm6]	A	C	2.034e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_sens
2R	8555195	2R_8555195_SNP [dm3] 2R_12667690_SNP [dm6]	C	A	2.036e^-4	0.916	INTRON nemy
2R	19108571	2R_19108571_INS [dm3] 2R_23221048_INS [dm6]	C	CAGCGGCTTGC...	2.037e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7784184	2L_7784184_SNP [dm3] 2L_7784184_SNP [dm6]	T	C	2.043e^-4	0.916	SYNONYMOUS_CODING CG7154	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14258886	2L_14258886_DEL [dm3] 2L_14258886_DEL [dm6]	AAT	A	2.045e^-4	0.916	INTERGENIC
3L	577186	3L_577186_SNP [dm3] 3L_577186_SNP [dm6]	C	A	2.050e^-4	0.916	UTR_3_PRIME hipk
2R	7566078	2R_7566078_SNP [dm3] 2R_11678573_SNP [dm6]	A	G	2.055e^-4	0.916	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_bab1
2R	3642720	2R_3642720_SNP [dm3] 2R_7755215_SNP [dm6]	G	A	2.061e^-4	0.916	INTRON CG30497 & 1 other
2R	14285413	2R_14285413_SNP [dm3] 2R_18397908_SNP [dm6]	C	A	2.072e^-4	0.916	UPSTREAM GstE1 & 1 other INTRON GstE10
X	19105661	X_19105661_DEL [dm3] X_19211628_DEL [dm6]	AACCGGAGA	A	2.082e^-4	0.916	UTR_5_PRIME CG14195 UPSTREAM CG14195
2R	18634672	2R_18634672_SNP [dm3] 2R_22747167_SNP [dm6]	G	A	2.084e^-4	0.916	SYNONYMOUS_CODING CG42260	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8900203	2L_8900203_SNP [dm3] 2L_8900203_SNP [dm6]	T	A	2.085e^-4	0.916	INTRON CG34398
2R	20366350	2R_20366350_INS [dm3] 2R_24478827_INS [dm6]	C	CC	2.090e^-4	0.916	INTRON CG13579
3L	9838955	3L_9838955_SNP [dm3] 3L_9845855_SNP [dm6]	G	T	2.097e^-4	0.916	INTRON RasGAP1
X	13207548	X_13207548_SNP [dm3] X_13313515_SNP [dm6]	C	A	2.099e^-4	0.916	INTRON IP3K2
3L	4493895	3L_4493895_SNP [dm3] 3L_4493895_SNP [dm6]	T	A	2.105e^-4	0.916	DOWNSTREAM CR44709 INTERGENIC
X	3729868	X_3729868_SNP [dm3] X_3835835_SNP [dm6]	T	C	2.106e^-4	0.916	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17143367	2R_17143367_SNP [dm3] 2R_21255862_SNP [dm6]	C	T	2.107e^-4	0.916	UTR_5_PRIME Rgk3
2L	9509124	2L_9509124_SNP [dm3] 2L_9509124_SNP [dm6]	T	C	2.108e^-4	0.916	INTRON CG33298
3L	9740719	3L_9740719_SNP [dm3] 3L_9747619_SNP [dm6]	A	G	2.115e^-4	0.916	SYNONYMOUS_CODING CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4998326	2L_4998326_SNP [dm3] 2L_4998326_SNP [dm6]	A	C	2.119e^-4	0.916	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_inv mE1_TFBS_Trl
2L	4635277	2L_4635277_SNP [dm3] 2L_4635277_SNP [dm6]	A	G	2.120e^-4	0.916	UPSTREAM CR45452 INTERGENIC
2R	8936340	2R_8936340_SNP [dm3] 2R_13048835_SNP [dm6]	C	T	2.125e^-4	0.916	DOWNSTREAM CG13324 INTERGENIC
2L	1838337	2L_1838337_SNP [dm3] 2L_1838337_SNP [dm6]	C	T	2.129e^-4	0.916	INTRON wry
3L	2543684	3L_2543684_SNP [dm3] 3L_2543684_SNP [dm6]	C	A	2.132e^-4	0.916	INTRON Spn	TF binding site mE1_TFBS_cad
X	8092878	X_8092878_SNP [dm3] X_8198845_SNP [dm6]	A	C	2.137e^-4	0.916	INTRON sdt
3L	12069443	3L_12069443_SNP [dm3] 3L_12076343_SNP [dm6]	G	A	2.138e^-4	0.916	INTRON Sema-5c
2R	17462569	2R_17462569_SNP [dm3] 2R_21575064_SNP [dm6]	C	T	2.163e^-4	0.923	INTRON CG10440
3R	13162893	3R_13162893_SNP [dm3] 3R_17337171_SNP [dm6]	T	A	2.165e^-4	0.923	INTRON beat-IIa
X	14580401	X_14580401_SNP [dm3] X_14686368_SNP [dm6]	T	C	2.178e^-4	0.925	UTR_3_PRIME NetB
3R	18916178	3R_18916178_DEL [dm3] 3R_23090456_DEL [dm6]	TATTCTAGGGACATTACATT...	T	2.179e^-4	0.925	INTRON CG13830
2R	19233334	2R_19233334_SNP [dm3] 2R_23345811_SNP [dm6]	A	C	2.190e^-4	0.927	SYNONYMOUS_CODING CG3502 UPSTREAM CG9863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8083447	3R_8083447_SNP [dm3] 3R_12257725_SNP [dm6]	T	C	2.203e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13153556	2L_13153556_SNP [dm3] 2L_13153556_SNP [dm6]	T	G	2.204e^-4	0.927	INTERGENIC
3R	5042790	3R_5042790_SNP [dm3] 3R_9217068_SNP [dm6]	A	G	2.207e^-4	0.927	INTRON pum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2707015	3L_2707015_SNP [dm3] 3L_2707015_SNP [dm6]	C	A	2.210e^-4	0.927	INTRON Fife
2L	3386589	2L_3386589_SNP [dm3] 2L_3386589_SNP [dm6]	T	C	2.216e^-4	0.927	DOWNSTREAM CR45301 & 1 other INTERGENIC
3L	5493274	3L_5493274_SNP [dm3] 3L_5500174_SNP [dm6]	G	A	2.221e^-4	0.927	DOWNSTREAM CR44518 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	8083320	3R_8083320_SNP [dm3] 3R_12257598_SNP [dm6]	G	A	2.230e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	22848918	3R_22848918_SNP [dm3] 3R_27023196_SNP [dm6]	G	A	2.236e^-4	0.927	START_GAINED CG6277 UTR_5_PRIME CG6277 INTRON RYa-R
2R	19314717	2R_19314717_DEL [dm3] 2R_23427194_DEL [dm6]	TCAGTGAA	T	2.240e^-4	0.927	INTRON CG9815	TF binding site BDTNP1_TFBS_dl
2R	14877534	2R_14877534_SNP [dm3] 2R_18990029_SNP [dm6]	T	G	2.247e^-4	0.927	INTRON tn
3R	21036549	3R_21036549_SNP [dm3] 3R_25210827_SNP [dm6]	G	A	2.254e^-4	0.927	INTRON CG13654
3R	21036561	3R_21036561_SNP [dm3] 3R_25210839_SNP [dm6]	A	C	2.254e^-4	0.927	INTRON CG13654
3L	6086189	3L_6086189_SNP [dm3] 3L_6093089_SNP [dm6]	A	G	2.266e^-4	0.927	UTR_5_PRIME CG10469 DOWNSTREAM CG13293 & 1 other
2L	3408880	2L_3408880_SNP [dm3] 2L_3408880_SNP [dm6]	G	A	2.272e^-4	0.927	INTRON pgant2
X	7978333	X_7978333_SNP [dm3] X_8084300_SNP [dm6]	C	A	2.279e^-4	0.927	SYNONYMOUS_CODING CG2256 EXON CR45535	TF binding site mE1_TFBS_chinmo
2L	16127090	2L_16127090_SNP [dm3] 2L_16127090_SNP [dm6]	C	T	2.285e^-4	0.927	INTERGENIC
2R	6305228	2R_6305228_SNP [dm3] 2R_10417723_SNP [dm6]	T	C	2.287e^-4	0.927	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	6296541	2R_6296541_SNP [dm3] 2R_10409036_SNP [dm6]	G	A	2.291e^-4	0.927	UPSTREAM CG43177 DOWNSTREAM CG33477 & 1 other INTRON CG42732
3L	9494503	3L_9494503_SNP [dm3] 3L_9501403_SNP [dm6]	G	T	2.293e^-4	0.927	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	27021994	3R_27021994_SNP [dm3] 3R_31196272_SNP [dm6]	G	T	2.303e^-4	0.927	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27021989	3R_27021989_SNP [dm3] 3R_31196267_SNP [dm6]	C	T	2.307e^-4	0.927	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9956702	3R_9956702_SNP [dm3] 3R_14130980_SNP [dm6]	A	G	2.313e^-4	0.927	SYNONYMOUS_CODING CG14356 DOWNSTREAM RpII140	TF binding site mE1_TFBS_cad
3L	22593553	3L_22593553_SNP [dm3] 3L_22600453_SNP [dm6]	T	C	2.316e^-4	0.927	INTRON CG14459
3R	25792432	3R_25792432_DEL [dm3] 3R_29966710_DEL [dm6]	AA	A	2.322e^-4	0.927	INTRON TkR99D
2R	20359348	2R_20359348_SNP [dm3] 2R_24471825_SNP [dm6]	G	A	2.322e^-4	0.927	UPSTREAM CG3492 INTRON CG13579
2R	14448003	2R_14448003_SNP [dm3] 2R_18560498_SNP [dm6]	G	A	2.326e^-4	0.927	SYNONYMOUS_CODING GEFmeso UTR_5_PRIME GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16287733	2R_16287733_DEL [dm3] 2R_20400228_DEL [dm6]	GA	G	2.328e^-4	0.927	INTERGENIC
2R	7264227	2R_7264227_SNP [dm3] 2R_11376722_SNP [dm6]	T	A	2.337e^-4	0.927	SYNONYMOUS_CODING CG13203 DOWNSTREAM Tsp47F	TF binding site mE1_TFBS_chinmo
2R	8438762	2R_8438762_INS [dm3] 2R_12551257_INS [dm6]	G	GAGCAA	2.340e^-4	0.927	INTRON fra
3R	797524	3R_797524_SNP [dm3] 3R_4971802_SNP [dm6]	G	A	2.342e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe
3R	13229981	3R_13229981_DEL [dm3] 3R_17404259_DEL [dm6]	TAAT	T	2.343e^-4	0.927	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
3L	16411846	3L_16411846_SNP [dm3] 3L_16418746_SNP [dm6]	A	G	2.374e^-4	0.929	SYNONYMOUS_CODING Aats-tyr UPSTREAM CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9903070	2L_9903070_SNP [dm3] 2L_9903070_SNP [dm6]	G	A	2.377e^-4	0.929	DOWNSTREAM CG13124 INTRON Muc30E
3L	967956	3L_967956_SNP [dm3] 3L_967956_SNP [dm6]	A	C	2.377e^-4	0.929	INTRON Glut1
2L	4891407	2L_4891407_SNP [dm3] 2L_4891407_SNP [dm6]	G	T	2.378e^-4	0.929	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5334871	3L_5334871_SNP [dm3] 3L_5341771_SNP [dm6]	T	A	2.378e^-4	0.929	UPSTREAM tRNA:S7:64D INTERGENIC
3L	2026666	3L_2026666_SNP [dm3] 3L_2026666_SNP [dm6]	G	A	2.381e^-4	0.929	UPSTREAM CG34259 INTERGENIC
2L	11701091	2L_11701091_SNP [dm3] 2L_11701091_SNP [dm6]	A	G	2.381e^-4	0.929	INTERGENIC
2R	6964107	2R_6964107_INS [dm3] 2R_11076602_INS [dm6]	C	CGC	2.390e^-4	0.93	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12820227	X_12820227_SNP [dm3] X_12926194_SNP [dm6]	T	G	2.399e^-4	0.931	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8434534	X_8434534_SNP [dm3] X_8540501_SNP [dm6]	C	G	2.419e^-4	0.935	INTRON Nrg
3R	6152540	3R_6152540_SNP [dm3] 3R_10326818_SNP [dm6]	T	G	2.429e^-4	0.935	INTRON Bruce	TF binding site mE1_TFBS_inv
X	4300225	X_4300225_SNP [dm3] X_4406192_SNP [dm6]	T	C	2.430e^-4	0.935	INTRON CR32773	TF binding site mE1_TFBS_chinmo
3L	2703103	3L_2703103_SNP [dm3] 3L_2703103_SNP [dm6]	C	A	2.433e^-4	0.935	INTRON Fife
3L	2702940	3L_2702940_SNP [dm3] 3L_2702940_SNP [dm6]	G	A	2.437e^-4	0.935	INTRON Fife
3R	12189491	3R_12189491_SNP [dm3] 3R_16363769_SNP [dm6]	G	A	2.439e^-4	0.935	INTRON CG14880
2L	6191105	2L_6191105_SNP [dm3] 2L_6191105_SNP [dm6]	T	C	2.452e^-4	0.938	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	8566382	3R_8566382_SNP [dm3] 3R_12740660_SNP [dm6]	G	A	2.465e^-4	0.942	SYNONYMOUS_CODING CG5724	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2702647	3L_2702647_SNP [dm3] 3L_2702647_SNP [dm6]	C	T	2.480e^-4	0.943	INTRON Fife
2R	6251499	2R_6251499_SNP [dm3] 2R_10363994_SNP [dm6]	C	T	2.482e^-4	0.943	DOWNSTREAM Gr47a INTRON CG42732
3L	8673116	3L_8673116_SNP [dm3] 3L_8680016_SNP [dm6]	A	T	2.483e^-4	0.943	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8160341	3L_8160341_SNP [dm3] 3L_8167241_SNP [dm6]	T	C	2.491e^-4	0.943	INTERGENIC
2R	18798457	2R_18798457_SNP [dm3] 2R_22910934_SNP [dm6]	T	G	2.503e^-4	0.943	INTRON nahoda	TF binding site BDTNP1_TFBS_slp1
2R	3642724	2R_3642724_SNP [dm3] 2R_7755219_SNP [dm6]	A	G	2.505e^-4	0.943	INTRON CG30497 & 1 other
3L	6975642	3L_6975642_SNP [dm3] 3L_6982542_SNP [dm6]	A	G	2.513e^-4	0.943	DOWNSTREAM CG32388 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13207558	X_13207558_SNP [dm3] X_13313525_SNP [dm6]	T	A	2.516e^-4	0.943	INTRON IP3K2
2L	12090683	2L_12090683_INS [dm3] 2L_12090683_INS [dm6]	G	GTTGG	2.531e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2L	16010108	2L_16010108_SNP [dm3] 2L_16010108_SNP [dm6]	G	A	2.533e^-4	0.943	INTRON beat-Ic
X	11056078	X_11056078_DEL [dm3] X_11162045_DEL [dm6]	TT	T	2.537e^-4	0.943	INTRON Dlic	TF binding site mE1_TFBS_sens
X	10903478	X_10903478_SNP [dm3] X_11009445_SNP [dm6]	T	A	2.539e^-4	0.943	INTRON CG42339
X	15659121	X_15659121_DEL [dm3] X_15765088_DEL [dm6]	CTAA	C	2.541e^-4	0.943	DOWNSTREAM CG8952 INTRON CG17209
3L	575683	3L_575683_SNP [dm3] 3L_575683_SNP [dm6]	T	C	2.550e^-4	0.943	UTR_3_PRIME hipk
3L	1288381	3L_1288381_SNP [dm3] 3L_1288381_SNP [dm6]	C	G	2.552e^-4	0.943	DOWNSTREAM CG32333 INTRON CG32333
2R	16527292	2R_16527292_SNP [dm3] 2R_20639787_SNP [dm6]	A	G	2.556e^-4	0.943	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16740226	3L_16740226_SNP [dm3] 3L_16747126_SNP [dm6]	G	A	2.559e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1510746	2L_1510746_SNP [dm3] 2L_1510746_SNP [dm6]	A	C	2.569e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14938536	3L_14938536_SNP [dm3] 3L_14945436_SNP [dm6]	A	G	2.578e^-4	0.943	DOWNSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	16740271	3L_16740271_SNP [dm3] 3L_16747171_SNP [dm6]	A	T	2.585e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6539813	2L_6539813_SNP [dm3] 2L_6539813_SNP [dm6]	A	G	2.588e^-4	0.943	INTRON eya
2L	10699777	2L_10699777_SNP [dm3] 2L_10699777_SNP [dm6]	C	G	2.589e^-4	0.943	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad
3L	14497936	3L_14497936_SNP [dm3] 3L_14504836_SNP [dm6]	T	A	2.596e^-4	0.943	INTRON bbg
X	19630752	X_19630752_SNP [dm3] X_19736719_SNP [dm6]	A	T	2.597e^-4	0.943	INTRON CG14234	TF binding site mE1_TFBS_cad
3L	6396442	3L_6396442_SNP [dm3] 3L_6403342_SNP [dm6]	T	C	2.601e^-4	0.943	INTRON CG42747
2R	6305174	2R_6305174_SNP [dm3] 2R_10417669_SNP [dm6]	A	G	2.603e^-4	0.943	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9275095	3L_9275095_SNP [dm3] 3L_9281995_SNP [dm6]	A	G	2.605e^-4	0.943	INTRON GluRIB
3L	5120695	3L_5120695_SNP [dm3] 3L_5127595_SNP [dm6]	C	T	2.616e^-4	0.945	INTERGENIC
3L	2543660	3L_2543660_SNP [dm3] 3L_2543660_SNP [dm6]	A	G	2.620e^-4	0.945	INTRON Spn	TF binding site mE1_TFBS_cad
2R	18932255	2R_18932255_SNP [dm3] 2R_23044732_SNP [dm6]	C	A	2.630e^-4	0.946	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	17426694	2R_17426694_SNP [dm3] 2R_21539189_SNP [dm6]	A	G	2.634e^-4	0.946	SYNONYMOUS_CODING CG33226 DOWNSTREAM CG30283 INTRON Egfr	TF binding site BDTNP1_TFBS_twi
3R	21016975	3R_21016975_SNP [dm3] 3R_25191253_SNP [dm6]	C	T	2.645e^-4	0.949	SYNONYMOUS_CODING dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8352911	3R_8352911_SNP [dm3] 3R_12527189_SNP [dm6]	T	C	2.655e^-4	0.95	INTRON Octbeta3R & 1 other
2R	14877527	2R_14877527_SNP [dm3] 2R_18990022_SNP [dm6]	A	T	2.664e^-4	0.952	INTRON tn
X	20845138	X_20845138_SNP [dm3] X_20974111_SNP [dm6]	T	C	2.682e^-4	0.952	INTERGENIC
2R	18926157	2R_18926157_SNP [dm3] 2R_23038634_SNP [dm6]	T	G	2.686e^-4	0.952	INTRON twi & 1 other
3L	11249597	3L_11249597_SNP [dm3] 3L_11256497_SNP [dm6]	T	C	2.692e^-4	0.952	DOWNSTREAM scyl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17571793	2R_17571793_SNP [dm3] 2R_21684288_SNP [dm6]	G	A	2.693e^-4	0.952	SYNONYMOUS_CODING CG30263 UPSTREAM CG10306	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4040573	3R_4040573_SNP [dm3] 3R_8214851_SNP [dm6]	A	T	2.697e^-4	0.952	INTERGENIC
2R	5861537	2R_5861537_SNP [dm3] 2R_9974032_SNP [dm6]	C	T	2.700e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	11386025	3L_11386025_SNP [dm3] 3L_11392925_SNP [dm6]	A	T	2.700e^-4	0.952	INTERGENIC
2L	2485505	2L_2485505_SNP [dm3] 2L_2485505_SNP [dm6]	A	T	2.724e^-4	0.959	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3R	10296246	3R_10296246_SNP [dm3] 3R_14470524_SNP [dm6]	C	T	2.734e^-4	0.959	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14958452	3R_14958452_SNP [dm3] 3R_19132730_SNP [dm6]	C	G	2.747e^-4	0.959	NON_SYNONYMOUS_CODING Cyp12a5 DOWNSTREAM CG6040	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9825444	2L_9825444_SNP [dm3] 2L_9825444_SNP [dm6]	C	A	2.747e^-4	0.959	INTRON nAChRalpha6
2R	20406918	2R_20406918_SNP [dm3] 2R_24519395_SNP [dm6]	C	A	2.747e^-4	0.959	UPSTREAM Ir60d DOWNSTREAM Ir60c INTERGENIC	TF binding site mE1_TFBS_cad
3R	22670758	3R_22670758_SNP [dm3] 3R_26845036_SNP [dm6]	T	C	2.755e^-4	0.96	INTRON Lerp
2L	4857393	2L_4857393_SNP [dm3] 2L_4857393_SNP [dm6]	C	A	2.758e^-4	0.96	INTRON pog
3R	9652427	3R_9652427_SNP [dm3] 3R_13826705_SNP [dm6]	A	C	2.770e^-4	0.96	DOWNSTREAM Mst87F INTERGENIC
2R	20403125	2R_20403125_SNP [dm3] 2R_24515602_SNP [dm6]	C	T	2.771e^-4	0.96	UPSTREAM Ir60b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	8092911	X_8092911_SNP [dm3] X_8198878_SNP [dm6]	G	T	2.780e^-4	0.96	INTRON sdt
X	13960185	X_13960185_SNP [dm3] X_14066152_SNP [dm6]	T	A	2.786e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25818009	3R_25818009_SNP [dm3] 3R_29992287_SNP [dm6]	G	T	2.789e^-4	0.96	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8858860	3R_8858860_INS [dm3] 3R_13033138_INS [dm6]	C	CT	2.790e^-4	0.96	INTRON ry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19961450	2R_19961450_SNP [dm3] 2R_24073927_SNP [dm6]	G	T	2.814e^-4	0.96	UPSTREAM Mlp60A DOWNSTREAM CG3209 INTERGENIC
3L	16740239	3L_16740239_SNP [dm3] 3L_16747139_SNP [dm6]	A	C	2.825e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16740241	3L_16740241_MNP [dm3] 3L_16747141_MNP [dm6]	GATA	TTGG	2.825e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10202388	2R_10202388_SNP [dm3] 2R_14314883_SNP [dm6]	C	T	2.826e^-4	0.96	INTRON Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	12183023	3R_12183023_SNP [dm3] 3R_16357301_SNP [dm6]	G	C	2.831e^-4	0.96	UPSTREAM CG10311 DOWNSTREAM CG17931 & 1 other INTERGENIC
3L	1798784	3L_1798784_SNP [dm3] 3L_1798784_SNP [dm6]	A	T	2.838e^-4	0.96	UPSTREAM Patj DOWNSTREAM CG12020 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
X	14519168	X_14519168_SNP [dm3] X_14625135_SNP [dm6]	C	T	2.845e^-4	0.96	INTRON NetA
3R	27022094	3R_27022094_SNP [dm3] 3R_31196372_SNP [dm6]	T	C	2.845e^-4	0.96	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	20365844	2R_20365844_SNP [dm3] 2R_24478321_SNP [dm6]	T	G	2.846e^-4	0.96	INTRON CG13579	TF binding site mE1_TFBS_chinmo
2L	3386042	2L_3386042_SNP [dm3] 2L_3386042_SNP [dm6]	A	C	2.851e^-4	0.96	DOWNSTREAM CR45301 INTERGENIC
2L	6066160	2L_6066160_SNP [dm3] 2L_6066160_SNP [dm6]	T	G	2.851e^-4	0.96	START_GAINED CG9147 UTR_5_PRIME CG9147 UPSTREAM Fbw5 INTRON CG9147	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2539611	X_2539611_SNP [dm3] X_2645578_SNP [dm6]	G	T	2.853e^-4	0.96	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	20365321	2R_20365321_SNP [dm3] 2R_24477798_SNP [dm6]	G	A	2.859e^-4	0.96	INTRON CG13579	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2819623	2L_2819623_SNP [dm3] 2L_2819623_SNP [dm6]	G	T	2.860e^-4	0.96	SPLICE_SITE_REGION Duox INTRON Duox	TF binding site mE1_TFBS_cad
3L	2703024	3L_2703024_SNP [dm3] 3L_2703024_SNP [dm6]	T	C	2.866e^-4	0.96	INTRON Fife
2R	6305134	2R_6305134_SNP [dm3] 2R_10417629_SNP [dm6]	A	C	2.873e^-4	0.961	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	23363198	3R_23363198_SNP [dm3] 3R_27537476_SNP [dm6]	G	C	2.893e^-4	0.962	UPSTREAM CR44288 EXON CR44289
3L	16740247	3L_16740247_SNP [dm3] 3L_16747147_SNP [dm6]	T	G	2.895e^-4	0.962	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6289855	2L_6289855_SNP [dm3] 2L_6289855_SNP [dm6]	T	C	2.903e^-4	0.962	SYNONYMOUS_CODING Ddr
2R	6305220	2R_6305220_SNP [dm3] 2R_10417715_SNP [dm6]	G	T	2.906e^-4	0.962	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19135800	2R_19135800_SNP [dm3] 2R_23248277_SNP [dm6]	A	G	2.908e^-4	0.962	UPSTREAM RpL22-like INTERGENIC
2L	391904	2L_391904_SNP [dm3] 2L_391904_SNP [dm6]	A	G	2.910e^-4	0.962	INTERGENIC
2R	4573547	2R_4573547_SNP [dm3] 2R_8686042_SNP [dm6]	T	C	2.912e^-4	0.962	INTERGENIC
3L	5334873	3L_5334873_SNP [dm3] 3L_5341773_SNP [dm6]	G	A	2.933e^-4	0.964	UPSTREAM tRNA:S7:64D INTERGENIC
2R	6305125	2R_6305125_SNP [dm3] 2R_10417620_SNP [dm6]	A	G	2.936e^-4	0.964	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	8083355	3R_8083355_SNP [dm3] 3R_12257633_SNP [dm6]	G	A	2.940e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	16740248	3L_16740248_SNP [dm3] 3L_16747148_SNP [dm6]	A	T	2.945e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9654654	3R_9654654_SNP [dm3] 3R_13828932_SNP [dm6]	T	A	2.946e^-4	0.964	UPSTREAM Mst87F DOWNSTREAM CR43300 INTERGENIC
X	13959390	X_13959390_SNP [dm3] X_14065357_SNP [dm6]	C	T	2.955e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13959391	X_13959391_SNP [dm3] X_14065358_SNP [dm6]	A	T	2.955e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	2.970e^-4	0.965	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
3R	9784624	3R_9784624_DEL [dm3] 3R_13958902_DEL [dm6]	AC	A	2.970e^-4	0.965	UTR_5_PRIME Ipp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20365015	2R_20365015_SNP [dm3] 2R_24477492_SNP [dm6]	A	G	2.976e^-4	0.965	INTRON CG13579	TF binding site mE1_TFBS_chinmo
3L	6088695	3L_6088695_SNP [dm3] 3L_6095595_SNP [dm6]	A	T	2.980e^-4	0.965	UPSTREAM CG10467 INTRON loj
2R	20378216	2R_20378216_SNP [dm3] 2R_24490693_SNP [dm6]	T	C	2.989e^-4	0.967	DOWNSTREAM CG13579 INTERGENIC
X	17516342	X_17516342_SNP [dm3] X_17622309_SNP [dm6]	G	A	2.998e^-4	0.968	DOWNSTREAM stas INTERGENIC	transposable element FlyBase
2R	16054800	2R_16054800_SNP [dm3] 2R_20167295_SNP [dm6]	C	G	3.019e^-4	0.972	INTERGENIC
2L	6066131	2L_6066131_SNP [dm3] 2L_6066131_SNP [dm6]	C	G	3.027e^-4	0.972	UTR_5_PRIME CG9147 UPSTREAM Fbw5 INTRON CG9147	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6085163	3L_6085163_SNP [dm3] 3L_6092063_SNP [dm6]	C	T	3.029e^-4	0.972	UTR_3_PRIME CG13293 DOWNSTREAM CG10469
2L	898590	2L_898590_SNP [dm3] 2L_898590_SNP [dm6]	T	G	3.035e^-4	0.972	UTR_5_PRIME Lsp1beta UPSTREAM Lsp1beta & 1 other	TF binding site mE1_TFBS_cad
2R	7735431	2R_7735431_SNP [dm3] 2R_11847926_SNP [dm6]	A	C	3.037e^-4	0.972	INTRON Sln
2R	19122571	2R_19122571_SNP [dm3] 2R_23235048_SNP [dm6]	T	C	3.042e^-4	0.972	INTERGENIC
3L	6012222	3L_6012222_SNP [dm3] 3L_6019122_SNP [dm6]	T	G	3.062e^-4	0.972	START_GAINED PVRAP UTR_5_PRIME PVRAP
3L	16259471	3L_16259471_SNP [dm3] 3L_16266371_SNP [dm6]	A	G	3.064e^-4	0.972	UTR_3_PRIME CG4950 DOWNSTREAM CG13069
2L	7889316	2L_7889316_SNP [dm3] 2L_7889316_SNP [dm6]	G	C	3.066e^-4	0.972	UTR_3_PRIME Spn28Db UPSTREAM Spn28Da
2R	14877544	2R_14877544_INS [dm3] 2R_18990039_INS [dm6]	T	TT	3.067e^-4	0.972	UPSTREAM tn INTRON tn
3R	26615463	3R_26615463_SNP [dm3] 3R_30789741_SNP [dm6]	C	T	3.072e^-4	0.972	UTR_3_PRIME wts DOWNSTREAM zfh1
3R	27021983	3R_27021983_INS [dm3] 3R_31196261_INS [dm6]	A	AA	3.073e^-4	0.972	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15974106	3L_15974106_SNP [dm3] 3L_15981006_SNP [dm6]	G	T	3.077e^-4	0.972	INTRON brm & 1 other	TF binding site mE1_TFBS_cad
X	13959358	X_13959358_SNP [dm3] X_14065325_SNP [dm6]	A	G	3.093e^-4	0.972	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1952382	2L_1952382_SNP [dm3] 2L_1952382_SNP [dm6]	T	C	3.098e^-4	0.972	SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9955085	3R_9955085_SNP [dm3] 3R_14129363_SNP [dm6]	T	A	3.107e^-4	0.972	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10365133	2R_10365133_SNP [dm3] 2R_14477628_SNP [dm6]	A	G	3.113e^-4	0.972	SPLICE_SITE_ACCEPTOR CR44462 INTRON CR44462	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19875878	X_19875878_SNP [dm3] X_19981845_SNP [dm6]	T	G	3.124e^-4	0.972	INTERGENIC
3L	13165338	3L_13165338_SNP [dm3] 3L_13172238_SNP [dm6]	T	A	3.127e^-4	0.972	INTERGENIC
3L	11385965	3L_11385965_SNP [dm3] 3L_11392865_SNP [dm6]	A	G	3.128e^-4	0.972	INTERGENIC
2L	6289693	2L_6289693_SNP [dm3] 2L_6289693_SNP [dm6]	G	A	3.128e^-4	0.972	INTRON Ddr
2R	14200515	2R_14200515_INS [dm3] 2R_18313010_INS [dm6]	C	CC	3.130e^-4	0.972	INTRON sbb
3L	9946295	3L_9946295_SNP [dm3] 3L_9953195_SNP [dm6]	A	T	3.133e^-4	0.972	INTRON CG34356
3R	21034104	3R_21034104_SNP [dm3] 3R_25208382_SNP [dm6]	G	A	3.155e^-4	0.972	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	15757767	3L_15757767_DEL [dm3] 3L_15764667_DEL [dm6]	TGCTTTAATCTTT...	T	3.169e^-4	0.972	INTERGENIC
3L	6428331	3L_6428331_SNP [dm3] 3L_6435231_SNP [dm6]	T	G	3.171e^-4	0.972	INTRON CG42747	TF binding site mE1_TFBS_cad
3R	19249034	3R_19249034_SNP [dm3] 3R_23423312_SNP [dm6]	C	T	3.171e^-4	0.972	INTRON CG4374	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12265475	2L_12265475_INS [dm3] 2L_12265475_INS [dm6]	T	TAT	3.173e^-4	0.972	INTRON aret
2R	12709829	2R_12709829_SNP [dm3] 2R_16822324_SNP [dm6]	T	G	3.173e^-4	0.972	INTERGENIC
2L	2819620	2L_2819620_SNP [dm3] 2L_2819620_SNP [dm6]	G	T	3.176e^-4	0.972	INTRON Duox	TF binding site mE1_TFBS_cad
2R	16826422	2R_16826422_SNP [dm3] 2R_20938917_SNP [dm6]	T	A	3.176e^-4	0.972	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_zfh1
2R	6305127	2R_6305127_SNP [dm3] 2R_10417622_SNP [dm6]	G	A	3.178e^-4	0.972	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15422139	2R_15422139_SNP [dm3] 2R_19534634_SNP [dm6]	T	C	3.197e^-4	0.973	INTRON sm
3L	727295	3L_727295_SNP [dm3] 3L_727295_SNP [dm6]	T	A	3.208e^-4	0.973	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	9621080	2L_9621080_SNP [dm3] 2L_9621080_SNP [dm6]	A	G	3.220e^-4	0.973	INTRON GlcAT-S
2L	12557951	2L_12557951_SNP [dm3] 2L_12557951_SNP [dm6]	G	A	3.232e^-4	0.973	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6788823	2R_6788823_SNP [dm3] 2R_10901318_SNP [dm6]	G	C	3.234e^-4	0.973	INTERGENIC
3R	18741660	3R_18741660_SNP [dm3] 3R_22915938_SNP [dm6]	C	T	3.238e^-4	0.973	INTRON klg
3L	8157917	3L_8157917_SNP [dm3] 3L_8164817_SNP [dm6]	T	A	3.239e^-4	0.973	UPSTREAM CG13675 INTRON CG13675
3R	8566493	3R_8566493_SNP [dm3] 3R_12740771_SNP [dm6]	G	C	3.240e^-4	0.973	NON_SYNONYMOUS_CODING CG5724	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27022005	3R_27022005_SNP [dm3] 3R_31196283_SNP [dm6]	G	T	3.240e^-4	0.973	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6066059	2L_6066059_SNP [dm3] 2L_6066059_SNP [dm6]	G	T	3.241e^-4	0.973	UPSTREAM CG9147 & 1 other INTRON CG9147	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20364874	2R_20364874_SNP [dm3] 2R_24477351_SNP [dm6]	A	G	3.241e^-4	0.973	INTRON CG13579
X	2804134	X_2804134_DEL [dm3] X_2910101_DEL [dm6]	AG	A	3.255e^-4	0.973	INTRON kirre
2L	3085146	2L_3085146_SNP [dm3] 2L_3085146_SNP [dm6]	C	G	3.258e^-4	0.973	INTRON toc
3L	368989	3L_368989_SNP [dm3] 3L_368989_SNP [dm6]	A	G	3.260e^-4	0.973	INTRON trh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3027804	2L_3027804_SNP [dm3] 2L_3027804_SNP [dm6]	C	T	3.262e^-4	0.973	SYNONYMOUS_CODING CG3605	TF binding site mE1_TFBS_sens
3L	5496055	3L_5496055_SNP [dm3] 3L_5502955_SNP [dm6]	A	C	3.264e^-4	0.973	DOWNSTREAM CG34342 INTERGENIC
2R	20377334	2R_20377334_SNP [dm3] 2R_24489811_SNP [dm6]	C	G	3.284e^-4	0.976	UTR_3_PRIME CG13579	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3396730	2L_3396730_SNP [dm3] 2L_3396730_SNP [dm6]	T	C	3.287e^-4	0.976	DOWNSTREAM CR44792 INTERGENIC
2R	14514526	2R_14514526_SNP [dm3] 2R_18627021_SNP [dm6]	A	C	3.294e^-4	0.976	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site mE1_TFBS_sens
3L	571997	3L_571997_SNP [dm3] 3L_571997_SNP [dm6]	G	A	3.302e^-4	0.976	INTRON hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22406480	3R_22406480_SNP [dm3] 3R_26580758_SNP [dm6]	A	G	3.306e^-4	0.976	SYNONYMOUS_CODING scrib	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10785436	X_10785436_SNP [dm3] X_10891403_SNP [dm6]	T	A	3.321e^-4	0.976	UPSTREAM CR45616 & 2 others INTERGENIC
2R	18608372	2R_18608372_SNP [dm3] 2R_22720867_SNP [dm6]	G	A	3.327e^-4	0.976	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	6395564	3L_6395564_SNP [dm3] 3L_6402464_SNP [dm6]	G	A	3.328e^-4	0.976	INTRON CG42747
2R	20205949	2R_20205949_SNP [dm3] 2R_24318426_SNP [dm6]	T	A	3.329e^-4	0.976	INTERGENIC
X	9476728	X_9476728_SNP [dm3] X_9582695_SNP [dm6]	A	G	3.336e^-4	0.976	UPSTREAM CR45540 INTERGENIC
2L	9630375	2L_9630375_SNP [dm3] 2L_9630375_SNP [dm6]	A	T	3.346e^-4	0.976	INTERGENIC
2R	15422123	2R_15422123_SNP [dm3] 2R_19534618_SNP [dm6]	C	T	3.349e^-4	0.976	INTRON sm
2R	10330972	2R_10330972_SNP [dm3] 2R_14443467_SNP [dm6]	G	A	3.349e^-4	0.976	INTRON Oaz
2L	15513215	2L_15513215_SNP [dm3] 2L_15513215_SNP [dm6]	G	T	3.353e^-4	0.976	INTERGENIC
3L	2540470	3L_2540470_SNP [dm3] 3L_2540470_SNP [dm6]	A	C	3.359e^-4	0.976	INTRON Spn
3L	16981398	3L_16981398_SNP [dm3] 3L_16988298_SNP [dm6]	G	A	3.377e^-4	0.976	INTRON Exn
2R	18614987	2R_18614987_SNP [dm3] 2R_22727482_SNP [dm6]	G	A	3.381e^-4	0.976	INTRON jbug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17552509	2R_17552509_SNP [dm3] 2R_21665004_SNP [dm6]	G	A	3.385e^-4	0.976	UTR_5_PRIME CG42363 UTR_3_PRIME CG42362 UPSTREAM CG42364
2L	2331440	2L_2331440_SNP [dm3] 2L_2331440_SNP [dm6]	G	T	3.388e^-4	0.976	INTRON CG9967 & 1 other
2R	14193035	2R_14193035_DEL [dm3] 2R_18305530_DEL [dm6]	TT	T	3.389e^-4	0.976	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	9544444	2R_9544444_SNP [dm3] 2R_13656939_SNP [dm6]	T	A	3.402e^-4	0.976	INTRON fas
2R	15131891	2R_15131891_SNP [dm3] 2R_19244386_SNP [dm6]	C	G	3.409e^-4	0.976	DOWNSTREAM cora INTERGENIC
2R	17424569	2R_17424569_SNP [dm3] 2R_21537064_SNP [dm6]	A	C	3.412e^-4	0.976	SYNONYMOUS_CODING CG30287 UPSTREAM CG30286 INTRON Egfr	TF binding site mE1_TFBS_sens
2L	8769505	2L_8769505_SNP [dm3] 2L_8769505_SNP [dm6]	C	T	3.415e^-4	0.976	SYNONYMOUS_CODING CG9465 UPSTREAM CG9463
3L	8078005	3L_8078005_SNP [dm3] 3L_8084905_SNP [dm6]	T	C	3.426e^-4	0.976	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
2R	18638178	2R_18638178_DEL [dm3] 2R_22750673_DEL [dm6]	CAG	C	3.431e^-4	0.976	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8362750	2L_8362750_SNP [dm3] 2L_8362750_SNP [dm6]	T	C	3.433e^-4	0.976	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	15513209	2L_15513209_SNP [dm3] 2L_15513209_SNP [dm6]	A	G	3.453e^-4	0.976	INTERGENIC
3L	6396438	3L_6396438_SNP [dm3] 3L_6403338_SNP [dm6]	G	C	3.474e^-4	0.976	INTRON CG42747
3R	17239455	3R_17239455_SNP [dm3] 3R_21413733_SNP [dm6]	C	T	3.486e^-4	0.976	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21756863	3R_21756863_SNP [dm3] 3R_25931141_SNP [dm6]	A	G	3.494e^-4	0.976	UPSTREAM CR34024 INTRON CCAP-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	22626751	3L_22626751_SNP [dm3] 3L_22633651_SNP [dm6]	G	A	3.496e^-4	0.976	INTRON CG14459
X	15430863	X_15430863_SNP [dm3] X_15536830_SNP [dm6]	C	T	3.497e^-4	0.976	INTRON Ac13E
3L	1715681	3L_1715681_MNP [dm3] 3L_1715681_MNP [dm6]	GTTA	TAAC	3.503e^-4	0.976	UTR_3_PRIME drpr DOWNSTREAM drpr & 1 other
3L	1715686	3L_1715686_INS [dm3] 3L_1715686_INS [dm6]	A	AT	3.503e^-4	0.976	UTR_3_PRIME drpr DOWNSTREAM drpr & 1 other
3R	7876426	3R_7876426_INS [dm3] 3R_12050704_INS [dm6]	A	AA	3.508e^-4	0.976	INTERGENIC
3R	15466154	3R_15466154_SNP [dm3] 3R_19640432_SNP [dm6]	A	T	3.514e^-4	0.976	INTRON subdued
3R	25875222	3R_25875222_SNP [dm3] 3R_30049500_SNP [dm6]	A	G	3.515e^-4	0.976	SPLICE_SITE_REGION CR44046 DOWNSTREAM CG7943 INTRON CG15528 & 1 other EXON CR44046	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5505206	3L_5505206_SNP [dm3] 3L_5512106_SNP [dm6]	A	G	3.516e^-4	0.976	DOWNSTREAM Lkr INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
2R	6305169	2R_6305169_SNP [dm3] 2R_10417664_SNP [dm6]	A	G	3.527e^-4	0.976	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11650245	3L_11650245_INS [dm3] 3L_11657145_INS [dm6]	A	ACAGCA	3.537e^-4	0.976	DOWNSTREAM mir-274 INTRON CG32085
2L	5882006	2L_5882006_SNP [dm3] 2L_5882006_SNP [dm6]	G	C	3.543e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2695319	2L_2695319_SNP [dm3] 2L_2695319_SNP [dm6]	A	T	3.544e^-4	0.976	DOWNSTREAM CG15398 INTRON CG31690
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	3.544e^-4	0.976	INTRON Octbeta3R
3R	21038468	3R_21038468_SNP [dm3] 3R_25212746_SNP [dm6]	G	T	3.546e^-4	0.976	SYNONYMOUS_CODING CG13654	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19135801	2R_19135801_INS [dm3] 2R_23248278_INS [dm6]	A	AAGTTA	3.547e^-4	0.976	UPSTREAM RpL22-like INTERGENIC
3L	3517970	3L_3517970_SNP [dm3] 3L_3517970_SNP [dm6]	G	A	3.548e^-4	0.976	INTRON Eip63E
2R	19991398	2R_19991398_SNP [dm3] 2R_24103875_SNP [dm6]	A	G	3.549e^-4	0.976	SYNONYMOUS_CODING enok
2L	3416622	2L_3416622_SNP [dm3] 2L_3416622_SNP [dm6]	T	C	3.549e^-4	0.976	UPSTREAM CG31952 INTRON pgant2
3R	27022152	3R_27022152_SNP [dm3] 3R_31196430_SNP [dm6]	A	G	3.557e^-4	0.976	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10619943	3L_10619943_SNP [dm3] 3L_10626843_SNP [dm6]	T	A	3.559e^-4	0.976	DOWNSTREAM CG14151 INTRON CG34238
3R	11008991	3R_11008991_SNP [dm3] 3R_15183269_SNP [dm6]	T	C	3.561e^-4	0.976	INTRON Gyc88E
3R	25902058	3R_25902058_SNP [dm3] 3R_30076336_SNP [dm6]	A	T	3.571e^-4	0.976	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	16740264	3L_16740264_SNP [dm3] 3L_16747164_SNP [dm6]	C	T	3.575e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	19233736	3R_19233736_SNP [dm3] 3R_23408014_SNP [dm6]	T	A	3.577e^-4	0.976	DOWNSTREAM Ir94e & 1 other INTERGENIC
2L	3435319	2L_3435319_SNP [dm3] 2L_3435319_SNP [dm6]	G	A	3.580e^-4	0.976	INTERGENIC
2L	19903535	2L_19903535_SNP [dm3] 2L_19903535_SNP [dm6]	A	C	3.581e^-4	0.976	INTRON sick
2R	4404567	2R_4404567_SNP [dm3] 2R_8517062_SNP [dm6]	G	T	3.582e^-4	0.976	INTRON mtt
2R	7462506	2R_7462506_SNP [dm3] 2R_11575001_SNP [dm6]	C	A	3.591e^-4	0.976	INTERGENIC
2L	16461194	2L_16461194_SNP [dm3] 2L_16461194_SNP [dm6]	C	A	3.597e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs
3R	22848917	3R_22848917_SNP [dm3] 3R_27023195_SNP [dm6]	C	T	3.599e^-4	0.976	UTR_5_PRIME CG6277 INTRON RYa-R
3R	2639353	3R_2639353_SNP [dm3] 3R_6813631_SNP [dm6]	C	A	3.599e^-4	0.976	INTRON CR42651	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1462469	2L_1462469_SNP [dm3] 2L_1462469_SNP [dm6]	C	T	3.604e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14192978	2R_14192978_SNP [dm3] 2R_18305473_SNP [dm6]	G	T	3.610e^-4	0.976	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	5431527	3L_5431527_SNP [dm3] 3L_5438427_SNP [dm6]	C	G	3.613e^-4	0.976	INTRON CG34391
X	16008975	X_16008975_SNP [dm3] X_16114942_SNP [dm6]	C	T	3.615e^-4	0.976	INTERGENIC
3R	26054338	3R_26054338_SNP [dm3] 3R_30228616_SNP [dm6]	G	A	3.637e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	20376793	2R_20376793_SNP [dm3] 2R_24489270_SNP [dm6]	G	A	3.647e^-4	0.98	SYNONYMOUS_CODING CG13579	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16853866	3R_16853866_SNP [dm3] 3R_21028144_SNP [dm6]	G	C	3.657e^-4	0.98	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
2L	14226233	2L_14226233_SNP [dm3] 2L_14226233_SNP [dm6]	T	C	3.667e^-4	0.98	INTRON Dyrk2	TF binding site BDTNP1_TFBS_da
3R	2312098	3R_2312098_SNP [dm3] 3R_6486376_SNP [dm6]	C	T	3.672e^-4	0.98	UPSTREAM CG15186 INTRON CG15186
3L	10842860	3L_10842860_SNP [dm3] 3L_10849760_SNP [dm6]	G	T	3.676e^-4	0.98	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	20342484	2R_20342484_SNP [dm3] 2R_24454961_SNP [dm6]	G	T	3.677e^-4	0.98	UPSTREAM CG13579 INTERGENIC
3L	11650251	3L_11650251_SNP [dm3] 3L_11657151_SNP [dm6]	G	T	3.691e^-4	0.98	DOWNSTREAM mir-274 INTRON CG32085
2L	4635484	2L_4635484_SNP [dm3] 2L_4635484_SNP [dm6]	G	A	3.694e^-4	0.98	INTERGENIC
3L	10935902	3L_10935902_SNP [dm3] 3L_10942802_SNP [dm6]	C	T	3.699e^-4	0.98	INTERGENIC
3L	10218423	3L_10218423_SNP [dm3] 3L_10225323_SNP [dm6]	G	A	3.703e^-4	0.98	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	9706757	X_9706757_SNP [dm3] X_9812724_SNP [dm6]	T	G	3.704e^-4	0.98	INTRON CG32698
3L	4686130	3L_4686130_SNP [dm3] 3L_4686130_SNP [dm6]	G	A	3.710e^-4	0.98	INTRON axo
2R	3642719	2R_3642719_SNP [dm3] 2R_7755214_SNP [dm6]	A	T	3.717e^-4	0.98	INTRON CG30497 & 1 other
2R	16356816	2R_16356816_SNP [dm3] 2R_20469311_SNP [dm6]	T	C	3.721e^-4	0.98	INTRON CG12484
3R	19215740	3R_19215740_SNP [dm3] 3R_23390018_SNP [dm6]	T	C	3.725e^-4	0.98	UPSTREAM CR43387 INTERGENIC
2R	10630934	2R_10630934_SNP [dm3] 2R_14743429_SNP [dm6]	G	T	3.733e^-4	0.98	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26590715	3R_26590715_INS [dm3] 3R_30764993_INS [dm6]	G	GA	3.744e^-4	0.98	UPSTREAM zfh1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14085794	2R_14085794_SNP [dm3] 2R_18198289_SNP [dm6]	G	A	3.760e^-4	0.98	INTERGENIC
2L	4631737	2L_4631737_SNP [dm3] 2L_4631737_SNP [dm6]	T	C	3.763e^-4	0.98	INTERGENIC
2L	16163701	2L_16163701_DEL [dm3] 2L_16163701_DEL [dm6]	TGTCTGCGCGGTCA...	G	3.777e^-4	0.98	INTERGENIC
2R	5137289	2R_5137289_SNP [dm3] 2R_9249784_SNP [dm6]	G	A	3.778e^-4	0.98	INTERGENIC
2R	15681928	2R_15681928_SNP [dm3] 2R_19794423_SNP [dm6]	A	G	3.782e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	17708131	2R_17708131_SNP [dm3] 2R_21820626_SNP [dm6]	C	T	3.796e^-4	0.98	DOWNSTREAM CG13492 INTERGENIC	TF binding site mE1_TFBS_cad
3R	8352983	3R_8352983_SNP [dm3] 3R_12527261_SNP [dm6]	T	A	3.799e^-4	0.98	INTRON Octbeta3R & 1 other
2L	4635487	2L_4635487_SNP [dm3] 2L_4635487_SNP [dm6]	A	G	3.802e^-4	0.98	INTERGENIC
2R	20191346	2R_20191346_DEL [dm3] 2R_24303823_DEL [dm6]	ATCTATCACTA...	A	3.802e^-4	0.98	INTERGENIC	regulatory region REDfly_CRMs
2R	18933372	2R_18933372_SNP [dm3] 2R_23045849_SNP [dm6]	A	C	3.806e^-4	0.98	UPSTREAM twi INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24354500	3R_24354500_SNP [dm3] 3R_28528778_SNP [dm6]	T	G	3.807e^-4	0.98	SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18373990	3R_18373990_SNP [dm3] 3R_22548268_SNP [dm6]	A	C	3.810e^-4	0.98	UPSTREAM AdipoR INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6296450	2R_6296450_SNP [dm3] 2R_10408945_SNP [dm6]	G	C	3.816e^-4	0.98	UPSTREAM CG43177 DOWNSTREAM CG33477 INTRON CG42732
X	10116306	X_10116306_SNP [dm3] X_10222273_SNP [dm6]	C	T	3.819e^-4	0.98	UPSTREAM CG34408 INTRON CG34408
3R	17939776	3R_17939776_SNP [dm3] 3R_22114054_SNP [dm6]	C	A	3.819e^-4	0.98	NON_SYNONYMOUS_CODING Ir94a
3L	16740274	3L_16740274_SNP [dm3] 3L_16747174_SNP [dm6]	T	A	3.821e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17772067	3L_17772067_SNP [dm3] 3L_17778967_SNP [dm6]	A	T	3.823e^-4	0.98	INTERGENIC
2L	10490030	2L_10490030_SNP [dm3] 2L_10490030_SNP [dm6]	G	T	3.833e^-4	0.98	UTR_3_PRIME CG6144 & 1 other	TF binding site mE1_TFBS_cad
3L	19429136	3L_19429136_SNP [dm3] 3L_19436036_SNP [dm6]	T	A	3.851e^-4	0.98	INTERGENIC
3L	10314441	3L_10314441_SNP [dm3] 3L_10321341_SNP [dm6]	G	A	3.864e^-4	0.98	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	626216	3L_626216_INS [dm3] 3L_626216_INS [dm6]	G	GG	3.866e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16740266	3L_16740266_SNP [dm3] 3L_16747166_SNP [dm6]	G	A	3.870e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17552510	2R_17552510_SNP [dm3] 2R_21665005_SNP [dm6]	T	C	3.889e^-4	0.98	UTR_5_PRIME CG42363 UTR_3_PRIME CG42362 UPSTREAM CG42364
3L	614470	3L_614470_SNP [dm3] 3L_614470_SNP [dm6]	T	G	3.892e^-4	0.98	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	17057135	2R_17057135_SNP [dm3] 2R_21169630_SNP [dm6]	G	A	3.897e^-4	0.98	NON_SYNONYMOUS_CODING hng1 UPSTREAM CG4266 DOWNSTREAM LSm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2485440	2L_2485440_SNP [dm3] 2L_2485440_SNP [dm6]	A	G	3.920e^-4	0.98	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
X	13506832	X_13506832_SNP [dm3] X_13612799_SNP [dm6]	G	T	3.922e^-4	0.98	SYNONYMOUS_CODING BthD UPSTREAM Ndc80 DOWNSTREAM tth	TF binding site mE1_TFBS_HSA
3R	13229823	3R_13229823_SNP [dm3] 3R_17404101_SNP [dm6]	A	T	3.923e^-4	0.98	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
3L	7611384	3L_7611384_SNP [dm3] 3L_7618284_SNP [dm6]	G	A	3.929e^-4	0.98	INTRON CG33275
2R	20216187	2R_20216187_SNP [dm3] 2R_24328664_SNP [dm6]	C	G	3.934e^-4	0.98	UPSTREAM CR44810 INTRON CR44810
3L	9016070	3L_9016070_SNP [dm3] 3L_9022970_SNP [dm6]	G	A	3.939e^-4	0.98	INTERGENIC
3R	23007850	3R_23007850_SNP [dm3] 3R_27182128_SNP [dm6]	C	A	3.953e^-4	0.98	INTRON Ser
X	19630808	X_19630808_SNP [dm3] X_19736775_SNP [dm6]	C	G	3.955e^-4	0.98	INTRON CG14234	TF binding site mE1_TFBS_cad
2R	5861560	2R_5861560_SNP [dm3] 2R_9974055_SNP [dm6]	A	T	3.958e^-4	0.98	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	17912651	3R_17912651_SNP [dm3] 3R_22086929_SNP [dm6]	T	A	3.963e^-4	0.98	UPSTREAM CG5791 & 1 other INTRON CG5778
3L	6542769	3L_6542769_SNP [dm3] 3L_6549669_SNP [dm6]	C	T	3.965e^-4	0.98	UTR_3_PRIME sfl	TF binding site mE1_TFBS_bab1 mE1_TFBS_kn
3L	14498282	3L_14498282_SNP [dm3] 3L_14505182_SNP [dm6]	A	G	3.968e^-4	0.98	INTRON bbg
3L	15321363	3L_15321363_SNP [dm3] 3L_15328263_SNP [dm6]	A	G	3.970e^-4	0.98	INTERGENIC
2L	15513276	2L_15513276_SNP [dm3] 2L_15513276_SNP [dm6]	A	G	3.972e^-4	0.98	INTERGENIC
2L	15513305	2L_15513305_SNP [dm3] 2L_15513305_SNP [dm6]	T	C	3.972e^-4	0.98	INTERGENIC
2L	6706434	2L_6706434_SNP [dm3] 2L_6706434_SNP [dm6]	A	G	3.976e^-4	0.98	INTRON Tsp
3L	11603153	3L_11603153_SNP [dm3] 3L_11610053_SNP [dm6]	G	T	3.978e^-4	0.98	UPSTREAM CG42832 & 1 other DOWNSTREAM Muc68Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16740278	3L_16740278_SNP [dm3] 3L_16747178_SNP [dm6]	T	A	4.000e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14155854	2R_14155854_SNP [dm3] 2R_18268349_SNP [dm6]	C	T	4.000e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20364562	2R_20364562_SNP [dm3] 2R_24477039_SNP [dm6]	G	A	4.001e^-4	0.98	INTRON CG13579
3L	16069882	3L_16069882_DEL [dm3] 3L_16076782_DEL [dm6]	TAT	T	4.008e^-4	0.98	INTRON Mbs
3R	25635394	3R_25635394_SNP [dm3] 3R_29809672_SNP [dm6]	T	G	4.013e^-4	0.98	NON_SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12699282	2R_12699282_SNP [dm3] 2R_16811777_SNP [dm6]	T	G	4.032e^-4	0.98	UPSTREAM CR44379 DOWNSTREAM CR44465 INTERGENIC
2L	3386052	2L_3386052_INS [dm3] 2L_3386052_INS [dm6]	T	TTTTTAGAGATACTT...	4.032e^-4	0.98	DOWNSTREAM CR45301 INTERGENIC
2L	4093304	2L_4093304_SNP [dm3] 2L_4093304_SNP [dm6]	T	C	4.037e^-4	0.98	INTRON ed
3R	27022065	3R_27022065_SNP [dm3] 3R_31196343_SNP [dm6]	A	G	4.057e^-4	0.98	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	821639	3L_821639_SNP [dm3] 3L_821639_SNP [dm6]	A	T	4.059e^-4	0.98	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5493091	3L_5493091_SNP [dm3] 3L_5499991_SNP [dm6]	A	G	4.072e^-4	0.98	EXON CR44518	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7087049	3L_7087049_SNP [dm3] 3L_7093949_SNP [dm6]	T	G	4.074e^-4	0.98	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	27021990	3R_27021990_SNP [dm3] 3R_31196268_SNP [dm6]	T	G	4.076e^-4	0.98	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18705710	3R_18705710_SNP [dm3] 3R_22879988_SNP [dm6]	T	A	4.077e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20358570	2R_20358570_SNP [dm3] 2R_24471047_SNP [dm6]	A	T	4.085e^-4	0.98	INTRON CG13579
3L	8968477	3L_8968477_SNP [dm3] 3L_8975377_SNP [dm6]	C	T	4.090e^-4	0.98	SYNONYMOUS_CODING Srp68 UPSTREAM pix	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	9630399	2L_9630399_SNP [dm3] 2L_9630399_SNP [dm6]	G	T	4.096e^-4	0.98	INTERGENIC
3L	2702875	3L_2702875_SNP [dm3] 3L_2702875_SNP [dm6]	T	A	4.100e^-4	0.98	INTRON Fife
3L	16740280	3L_16740280_SNP [dm3] 3L_16747180_SNP [dm6]	T	C	4.103e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5066225	2L_5066225_DEL [dm3] 2L_5066225_DEL [dm6]	GAATAG	T	4.105e^-4	0.98	INTRON qtc
2R	20364356	2R_20364356_SNP [dm3] 2R_24476833_SNP [dm6]	T	A	4.111e^-4	0.98	DOWNSTREAM CG16837 INTRON CG13579
3L	13323820	3L_13323820_SNP [dm3] 3L_13330720_SNP [dm6]	T	C	4.111e^-4	0.98	INTERGENIC
X	10117732	X_10117732_INS [dm3] X_10223699_INS [dm6]	T	TCTTT	4.129e^-4	0.98	INTRON CG34408
2R	4193960	2R_4193960_SNP [dm3] 2R_8306455_SNP [dm6]	T	C	4.142e^-4	0.98	INTERGENIC
2R	14156449	2R_14156449_INS [dm3] 2R_18268944_INS [dm6]	C	CCCAGCCCCCCAGTCCCTCC...	4.142e^-4	0.98	INTERGENIC
2R	5253290	2R_5253290_SNP [dm3] 2R_9365785_SNP [dm6]	G	C	4.169e^-4	0.98	INTRON CG13954	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6915005	2R_6915005_SNP [dm3] 2R_11027500_SNP [dm6]	C	T	4.172e^-4	0.98	INTRON luna
2R	13936650	2R_13936650_SNP [dm3] 2R_18049145_SNP [dm6]	G	A	4.172e^-4	0.98	SYNONYMOUS_CODING CG14495 DOWNSTREAM CG34005 & 1 other
3R	10855498	3R_10855498_SNP [dm3] 3R_15029776_SNP [dm6]	T	G	4.183e^-4	0.98	INTERGENIC
2L	5417859	2L_5417859_SNP [dm3] 2L_5417859_SNP [dm6]	T	A	4.193e^-4	0.98	INTERGENIC
3L	9598193	3L_9598193_SNP [dm3] 3L_9605093_SNP [dm6]	T	G	4.194e^-4	0.98	INTRON CG3280
3R	16045994	3R_16045994_SNP [dm3] 3R_20220272_SNP [dm6]	A	C	4.201e^-4	0.98	INTRON Nlg4	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	14590037	2R_14590037_SNP [dm3] 2R_18702532_SNP [dm6]	T	C	4.210e^-4	0.98	SYNONYMOUS_CODING Sik3 DOWNSTREAM Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6397816	3L_6397816_SNP [dm3] 3L_6404716_SNP [dm6]	T	A	4.213e^-4	0.98	INTRON CG42747
3L	12245492	3L_12245492_SNP [dm3] 3L_12252392_SNP [dm6]	A	G	4.218e^-4	0.98	INTRON app
3R	26513654	3R_26513654_SNP [dm3] 3R_30687932_SNP [dm6]	C	T	4.220e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16653957	3R_16653957_SNP [dm3] 3R_20828235_SNP [dm6]	T	C	4.222e^-4	0.98	DOWNSTREAM CR44047 INTRON AdSS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2819582	2L_2819582_SNP [dm3] 2L_2819582_SNP [dm6]	A	T	4.236e^-4	0.98	SPLICE_SITE_REGION Duox INTRON Duox	TF binding site mE1_TFBS_cad
2L	4997670	2L_4997670_SNP [dm3] 2L_4997670_SNP [dm6]	G	T	4.250e^-4	0.98	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	15013905	2L_15013905_SNP [dm3] 2L_15013905_SNP [dm6]	T	C	4.261e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13713600	2R_13713600_SNP [dm3] 2R_17826095_SNP [dm6]	A	G	4.262e^-4	0.98	INTRON grh	transposable element FlyBase
2R	20364886	2R_20364886_SNP [dm3] 2R_24477363_SNP [dm6]	T	C	4.262e^-4	0.98	INTRON CG13579
X	9706616	X_9706616_SNP [dm3] X_9812583_SNP [dm6]	A	T	4.263e^-4	0.98	INTRON CG32698
2R	17162828	2R_17162828_SNP [dm3] 2R_21275323_SNP [dm6]	A	T	4.269e^-4	0.98	INTRON Rgk3
3L	16070235	3L_16070235_SNP [dm3] 3L_16077135_SNP [dm6]	C	A	4.274e^-4	0.98	INTRON Mbs
3L	13677328	3L_13677328_SNP [dm3] 3L_13684228_SNP [dm6]	T	C	4.275e^-4	0.98	INTRON bru-3
3L	12561408	3L_12561408_SNP [dm3] 3L_12568308_SNP [dm6]	A	G	4.277e^-4	0.98	INTRON sowah
2R	8555183	2R_8555183_SNP [dm3] 2R_12667678_SNP [dm6]	C	T	4.292e^-4	0.98	INTRON nemy
2R	6676308	2R_6676308_SNP [dm3] 2R_10788803_SNP [dm6]	C	G	4.304e^-4	0.98	INTRON CG33144
2L	8249854	2L_8249854_SNP [dm3] 2L_8249854_SNP [dm6]	C	G	4.309e^-4	0.98	NON_SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11761557	2R_11761557_SNP [dm3] 2R_15874052_SNP [dm6]	A	T	4.312e^-4	0.98	INTRON sli	TF binding site BDTNP1_TFBS_sna
X	3976882	X_3976882_SNP [dm3] X_4082849_SNP [dm6]	G	C	4.314e^-4	0.98	SYNONYMOUS_CODING CG43689
2R	12125645	2R_12125645_SNP [dm3] 2R_16238140_SNP [dm6]	T	A	4.319e^-4	0.98	UTR_3_PRIME krimp DOWNSTREAM CG3687
2L	15285707	2L_15285707_SNP [dm3] 2L_15285707_SNP [dm6]	T	C	4.338e^-4	0.98	SYNONYMOUS_CODING CG15263
3L	10999039	3L_10999039_SNP [dm3] 3L_11005939_SNP [dm6]	G	A	4.344e^-4	0.98	INTRON klu
2R	15311676	2R_15311676_SNP [dm3] 2R_19424171_SNP [dm6]	C	T	4.356e^-4	0.98	UPSTREAM CalpA & 1 other INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9774376	2L_9774376_SNP [dm3] 2L_9774376_SNP [dm6]	G	T	4.360e^-4	0.98	NON_SYNONYMOUS_CODING ppk11
2R	19122570	2R_19122570_SNP [dm3] 2R_23235047_SNP [dm6]	T	C	4.370e^-4	0.98	INTERGENIC
2R	7574616	2R_7574616_DEL [dm3] 2R_11687111_DEL [dm6]	TAACGCATAT	T	4.381e^-4	0.98	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs
2R	7574654	2R_7574654_SNP [dm3] 2R_11687149_SNP [dm6]	A	T	4.382e^-4	0.98	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs
3L	727445	3L_727445_SNP [dm3] 3L_727445_SNP [dm6]	G	A	4.385e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_sens
3R	1756602	3R_1756602_SNP [dm3] 3R_5930880_SNP [dm6]	A	G	4.387e^-4	0.98	INTRON CG34113
2R	20372892	2R_20372892_INS [dm3] 2R_24485369_INS [dm6]	A	ACCAATA	4.392e^-4	0.98	INTRON CG13579
3L	8398291	3L_8398291_SNP [dm3] 3L_8405191_SNP [dm6]	A	G	4.406e^-4	0.98	NON_SYNONYMOUS_CODING CG33057 UTR_5_PRIME mkg-p UPSTREAM CG13667 & 1 other INTRON mkg-p	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	9630400	2L_9630400_SNP [dm3] 2L_9630400_SNP [dm6]	C	A	4.410e^-4	0.98	INTERGENIC
2L	10499607	2L_10499607_SNP [dm3] 2L_10499607_SNP [dm6]	C	A	4.411e^-4	0.98	INTRON Myo31DF
3L	12069494	3L_12069494_SNP [dm3] 3L_12076394_SNP [dm6]	T	A	4.423e^-4	0.98	INTRON Sema-5c
2R	20351114	2R_20351114_SNP [dm3] 2R_24463591_SNP [dm6]	C	A	4.429e^-4	0.98	INTRON CG13579
2L	10702857	2L_10702857_SNP [dm3] 2L_10702857_SNP [dm6]	A	T	4.440e^-4	0.98	UPSTREAM CG6415 INTRON Lip2
3L	9988214	3L_9988214_SNP [dm3] 3L_9995114_SNP [dm6]	C	G	4.441e^-4	0.98	INTRON dpr6
2R	11689264	2R_11689264_SNP [dm3] 2R_15801759_SNP [dm6]	T	C	4.446e^-4	0.98	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11689271	2R_11689271_SNP [dm3] 2R_15801766_SNP [dm6]	T	C	4.446e^-4	0.98	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10785440	X_10785440_SNP [dm3] X_10891407_SNP [dm6]	G	C	4.457e^-4	0.98	UPSTREAM CR45616 & 2 others INTERGENIC
X	13471230	X_13471230_SNP [dm3] X_13577197_SNP [dm6]	G	T	4.463e^-4	0.98	UTR_5_PRIME Tango13	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8326817	3R_8326817_SNP [dm3] 3R_12501095_SNP [dm6]	G	C	4.470e^-4	0.98	INTERGENIC
3R	13229904	3R_13229904_SNP [dm3] 3R_17404182_SNP [dm6]	C	T	4.470e^-4	0.98	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
2R	19147773	2R_19147773_SNP [dm3] 2R_23260250_SNP [dm6]	C	G	4.474e^-4	0.98	INTERGENIC
3L	5959040	3L_5959040_SNP [dm3] 3L_5965940_SNP [dm6]	A	G	4.481e^-4	0.98	INTERGENIC
2L	17680551	2L_17680551_SNP [dm3] 2L_17680551_SNP [dm6]	C	A	4.488e^-4	0.98	INTRON CadN
3R	18705662	3R_18705662_SNP [dm3] 3R_22879940_SNP [dm6]	A	G	4.489e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24813036	3R_24813036_SNP [dm3] 3R_28987314_SNP [dm6]	T	G	4.499e^-4	0.98	INTERGENIC
3L	13823015	3L_13823015_SNP [dm3] 3L_13829915_SNP [dm6]	A	G	4.500e^-4	0.98	INTERGENIC
2L	10703526	2L_10703526_SNP [dm3] 2L_10703526_SNP [dm6]	C	G	4.501e^-4	0.98	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12867494	X_12867494_SNP [dm3] X_12973461_SNP [dm6]	A	C	4.503e^-4	0.98	NON_SYNONYMOUS_CODING CG15721 UPSTREAM CR43636 DOWNSTREAM CR43152	TF binding site mE1_TFBS_sens
2R	20200330	2R_20200330_SNP [dm3] 2R_24312807_SNP [dm6]	T	C	4.505e^-4	0.98	UTR_3_PRIME betaTub60D	TF binding site mE1_TFBS_bab1
3R	6003276	3R_6003276_SNP [dm3] 3R_10177554_SNP [dm6]	G	A	4.506e^-4	0.98	INTRON CG12814
2R	9722394	2R_9722394_SNP [dm3] 2R_13834889_SNP [dm6]	T	A	4.527e^-4	0.98	INTRON CG6337	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13672714	2L_13672714_SNP [dm3] 2L_13672714_SNP [dm6]	T	C	4.528e^-4	0.98	SPLICE_SITE_DONOR CG18507 INTRON CG18507
2L	6868500	2L_6868500_SNP [dm3] 2L_6868500_SNP [dm6]	G	A	4.530e^-4	0.98	INTRON Nha1
2R	11904728	2R_11904728_SNP [dm3] 2R_16017223_SNP [dm6]	A	T	4.533e^-4	0.98	UPSTREAM CG8399 & 1 other INTERGENIC
X	8434492	X_8434492_SNP [dm3] X_8540459_SNP [dm6]	T	C	4.542e^-4	0.98	INTRON Nrg
3L	2545390	3L_2545390_SNP [dm3] 3L_2545390_SNP [dm6]	T	A	4.545e^-4	0.98	INTRON Spn
2R	2798226	2R_2798226_SNP [dm3] 2R_6910721_SNP [dm6]	A	G	4.550e^-4	0.98	INTRON CG30158
3L	22634836	3L_22634836_SNP [dm3] 3L_22641736_SNP [dm6]	C	T	4.551e^-4	0.98	INTERGENIC	transposable element FlyBase
3R	9322353	3R_9322353_SNP [dm3] 3R_13496631_SNP [dm6]	C	A	4.553e^-4	0.98	INTERGENIC
3L	13915548	3L_13915548_SNP [dm3] 3L_13922448_SNP [dm6]	T	A	4.553e^-4	0.98	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	2694678	3L_2694678_SNP [dm3] 3L_2694678_SNP [dm6]	T	A	4.558e^-4	0.98	INTRON Fife
3L	2694684	3L_2694684_SNP [dm3] 3L_2694684_SNP [dm6]	T	G	4.558e^-4	0.98	INTRON Fife
3R	8265543	3R_8265543_SNP [dm3] 3R_12439821_SNP [dm6]	A	C	4.560e^-4	0.98	UPSTREAM CG17207 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	2485509	2L_2485509_SNP [dm3] 2L_2485509_SNP [dm6]	T	A	4.560e^-4	0.98	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
X	3448875	X_3448875_SNP [dm3] X_3554842_SNP [dm6]	A	C	4.564e^-4	0.98	INTRON CG32791
2R	14287956	2R_14287956_SNP [dm3] 2R_18400451_SNP [dm6]	T	C	4.567e^-4	0.98	UPSTREAM GstE3 DOWNSTREAM GstE2 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	14498065	3L_14498065_SNP [dm3] 3L_14504965_SNP [dm6]	A	C	4.567e^-4	0.98	INTRON bbg
3L	2703074	3L_2703074_INS [dm3] 3L_2703074_INS [dm6]	T	TAACTGTATT	4.570e^-4	0.98	INTRON Fife
2R	11761543	2R_11761543_SNP [dm3] 2R_15874038_SNP [dm6]	C	A	4.573e^-4	0.98	INTRON sli	TF binding site BDTNP1_TFBS_sna
X	11526648	X_11526648_SNP [dm3] X_11632615_SNP [dm6]	T	C	4.577e^-4	0.98	INTRON Ptp10D
2L	14855888	2L_14855888_SNP [dm3] 2L_14855888_SNP [dm6]	A	C	4.583e^-4	0.98	INTERGENIC
3R	9954032	3R_9954032_SNP [dm3] 3R_14128310_SNP [dm6]	C	T	4.583e^-4	0.98	INTRON RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10555092	3L_10555092_SNP [dm3] 3L_10561992_SNP [dm6]	A	C	4.587e^-4	0.98	INTRON A2bp1
2R	17596267	2R_17596267_SNP [dm3] 2R_21708762_SNP [dm6]	G	A	4.590e^-4	0.98	UPSTREAM HmgZ DOWNSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	17181050	3L_17181050_SNP [dm3] 3L_17187950_SNP [dm6]	G	A	4.592e^-4	0.98	INTRON Rbp6
2L	11981037	2L_11981037_SNP [dm3] 2L_11981037_SNP [dm6]	G	T	4.594e^-4	0.98	UPSTREAM CG16965 INTERGENIC
3L	3668642	3L_3668642_SNP [dm3] 3L_3668642_SNP [dm6]	C	A	4.602e^-4	0.98	INTERGENIC
3R	14036576	3R_14036576_SNP [dm3] 3R_18210854_SNP [dm6]	T	A	4.606e^-4	0.98	INTRON CG7985
3L	1471205	3L_1471205_SNP [dm3] 3L_1471205_SNP [dm6]	C	T	4.609e^-4	0.98	UTR_3_PRIME CG32319 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	12982300	2L_12982300_SNP [dm3] 2L_12982300_SNP [dm6]	A	T	4.610e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15809295	3R_15809295_SNP [dm3] 3R_19983573_SNP [dm6]	A	G	4.612e^-4	0.98	INTRON Hs6st
2L	2819535	2L_2819535_SNP [dm3] 2L_2819535_SNP [dm6]	C	A	4.613e^-4	0.98	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad
3R	23537574	3R_23537574_SNP [dm3] 3R_27711852_SNP [dm6]	C	T	4.622e^-4	0.98	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10842876	3R_10842876_SNP [dm3] 3R_15017154_SNP [dm6]	G	A	4.624e^-4	0.98	INTERGENIC
3L	1415287	3L_1415287_SNP [dm3] 3L_1415287_SNP [dm6]	G	A	4.626e^-4	0.98	UPSTREAM FucTD INTRON Ptp61F
3L	6015479	3L_6015479_SNP [dm3] 3L_6022379_SNP [dm6]	C	A	4.626e^-4	0.98	INTRON PVRAP
X	14393546	X_14393546_SNP [dm3] X_14499513_SNP [dm6]	A	G	4.630e^-4	0.98	INTERGENIC
2R	14193734	2R_14193734_SNP [dm3] 2R_18306229_SNP [dm6]	G	A	4.630e^-4	0.98	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
2R	14155707	2R_14155707_SNP [dm3] 2R_18268202_SNP [dm6]	C	A	4.633e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3779254	3L_3779254_SNP [dm3] 3L_3779254_SNP [dm6]	G	A	4.636e^-4	0.98	INTRON CG32264
2L	15014674	2L_15014674_DEL [dm3] 2L_15014674_DEL [dm6]	CTGTGCCTGCAAATGTTTTA...	C	4.636e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6956724	2R_6956724_SNP [dm3] 2R_11069219_SNP [dm6]	C	T	4.651e^-4	0.98	INTRON luna	TF binding site mE1_TFBS_chinmo
3L	14497978	3L_14497978_SNP [dm3] 3L_14504878_SNP [dm6]	A	C	4.658e^-4	0.98	INTRON bbg
2R	20379376	2R_20379376_SNP [dm3] 2R_24491853_SNP [dm6]	G	A	4.658e^-4	0.98	DOWNSTREAM CG13589 INTERGENIC
3L	19641875	3L_19641875_SNP [dm3] 3L_19648775_SNP [dm6]	C	T	4.658e^-4	0.98	INTRON Oat
2R	17868651	2R_17868651_SNP [dm3] 2R_21981146_SNP [dm6]	G	A	4.666e^-4	0.98	DOWNSTREAM Gr58a INTERGENIC
2L	14257962	2L_14257962_SNP [dm3] 2L_14257962_SNP [dm6]	T	C	4.681e^-4	0.98	INTERGENIC
X	16232785	X_16232785_DEL [dm3] X_16338752_DEL [dm6]	AA	A	4.686e^-4	0.98	UTR_3_PRIME Dsp1	TF binding site mE1_TFBS_inv
2R	20363008	2R_20363008_SNP [dm3] 2R_24475485_SNP [dm6]	G	A	4.692e^-4	0.98	SYNONYMOUS_CODING CG16837 DOWNSTREAM CG3494 INTRON CG13579
X	2541521	X_2541521_SNP [dm3] X_2647488_SNP [dm6]	C	T	4.694e^-4	0.98	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19563053	3R_19563053_DEL [dm3] 3R_23737331_DEL [dm6]	AA	A	4.707e^-4	0.98	INTRON Hmgcr
3L	17772056	3L_17772056_SNP [dm3] 3L_17778956_SNP [dm6]	G	A	4.714e^-4	0.98	INTERGENIC
X	18620285	X_18620285_SNP [dm3] X_18726252_SNP [dm6]	T	C	4.718e^-4	0.98	NON_SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM CG42302	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	15319069	X_15319069_DEL [dm3] X_15425036_DEL [dm6]	AAC	A	4.719e^-4	0.98	INTRON Cngl
2L	15291305	2L_15291305_SNP [dm3] 2L_15291305_SNP [dm6]	A	G	4.722e^-4	0.98	DOWNSTREAM CG15260 INTERGENIC
X	19629921	X_19629921_SNP [dm3] X_19735888_SNP [dm6]	G	A	4.739e^-4	0.98	UTR_5_PRIME CG14234	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27022000	3R_27022000_SNP [dm3] 3R_31196278_SNP [dm6]	C	T	4.741e^-4	0.98	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15423869	2R_15423869_SNP [dm3] 2R_19536364_SNP [dm6]	A	C	4.743e^-4	0.98	INTRON sm	TF binding site BDTNP1_TFBS_twi
3L	10260973	3L_10260973_SNP [dm3] 3L_10267873_SNP [dm6]	T	C	4.743e^-4	0.98	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
3L	5334099	3L_5334099_SNP [dm3] 3L_5340999_SNP [dm6]	A	T	4.747e^-4	0.98	INTERGENIC
2R	15946126	2R_15946126_DEL [dm3] 2R_20058621_DEL [dm6]	TGGGCCTGTGT...	T	4.748e^-4	0.98	EXON CR44631	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	6088721	3L_6088721_SNP [dm3] 3L_6095621_SNP [dm6]	T	A	4.750e^-4	0.98	UPSTREAM CG10467 INTRON loj
3L	7579379	3L_7579379_SNP [dm3] 3L_7586279_SNP [dm6]	G	A	4.752e^-4	0.98	SYNONYMOUS_CODING CG14838
3L	6396433	3L_6396433_SNP [dm3] 3L_6403333_SNP [dm6]	C	T	4.754e^-4	0.98	INTRON CG42747
3L	9983246	3L_9983246_SNP [dm3] 3L_9990146_SNP [dm6]	C	T	4.760e^-4	0.98	INTRON dpr6
3R	16934783	3R_16934783_SNP [dm3] 3R_21109061_SNP [dm6]	C	A	4.766e^-4	0.98	INTRON rtet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16195325	2R_16195325_SNP [dm3] 2R_20307820_SNP [dm6]	G	T	4.772e^-4	0.98	DOWNSTREAM CG13868 INTRON CG11200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	6752857	2L_6752857_SNP [dm3] 2L_6752857_SNP [dm6]	C	T	4.775e^-4	0.98	INTRON CG11221
3L	8080122	3L_8080122_SNP [dm3] 3L_8087022_SNP [dm6]	C	A	4.787e^-4	0.98	DOWNSTREAM CG7565 INTRON Ect4
2R	2481675	2R_2481675_SNP [dm3] 2R_6594170_SNP [dm6]	T	A	4.790e^-4	0.98	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	22626897	3L_22626897_SNP [dm3] 3L_22633797_SNP [dm6]	A	G	4.793e^-4	0.98	INTRON CG14459	TF binding site mE1_TFBS_ttk mE1_TFBS_zfh1
3L	14498020	3L_14498020_SNP [dm3] 3L_14504920_SNP [dm6]	G	A	4.797e^-4	0.98	INTRON bbg
3L	6618759	3L_6618759_SNP [dm3] 3L_6625659_SNP [dm6]	T	C	4.800e^-4	0.98	INTRON GluRIA
2R	10715588	2R_10715588_SNP [dm3] 2R_14828083_SNP [dm6]	A	T	4.801e^-4	0.98	INTERGENIC
3R	17908415	3R_17908415_SNP [dm3] 3R_22082693_SNP [dm6]	G	A	4.806e^-4	0.98	INTRON CG13408
3L	14782820	3L_14782820_SNP [dm3] 3L_14789720_SNP [dm6]	A	T	4.807e^-4	0.98	UPSTREAM CG9425 DOWNSTREAM Tdrd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	20100945	3L_20100945_SNP [dm3] 3L_20107845_SNP [dm6]	T	G	4.833e^-4	0.98	DOWNSTREAM Ir76b & 1 other INTERGENIC	transposable element FlyBase
3L	17498543	3L_17498543_SNP [dm3] 3L_17505443_SNP [dm6]	T	A	4.833e^-4	0.98	INTRON Oatp74D	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8057953	3L_8057953_SNP [dm3] 3L_8064853_SNP [dm6]	A	T	4.837e^-4	0.98	DOWNSTREAM tRNA:CR32361 INTRON Ect4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22406201	3R_22406201_SNP [dm3] 3R_26580479_SNP [dm6]	C	A	4.837e^-4	0.98	SYNONYMOUS_CODING scrib	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17276932	2R_17276932_SNP [dm3] 2R_21389427_SNP [dm6]	C	T	4.840e^-4	0.98	START_GAINED Acox57D-d UTR_5_PRIME Acox57D-d DOWNSTREAM Acox57D-p
3L	1218839	3L_1218839_SNP [dm3] 3L_1218839_SNP [dm6]	A	C	4.841e^-4	0.98	UPSTREAM LysP INTRON mwh
2R	20378158	2R_20378158_SNP [dm3] 2R_24490635_SNP [dm6]	G	A	4.843e^-4	0.98	UTR_3_PRIME CG13579
3R	12469605	3R_12469605_SNP [dm3] 3R_16643883_SNP [dm6]	G	A	4.843e^-4	0.98	UTR_5_PRIME CG10326 DOWNSTREAM nonA-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	2798227	2R_2798227_SNP [dm3] 2R_6910722_SNP [dm6]	G	A	4.844e^-4	0.98	INTRON CG30158
2R	8496792	2R_8496792_SNP [dm3] 2R_12609287_SNP [dm6]	C	G	4.849e^-4	0.98	SYNONYMOUS_CODING Amph INTRON Amph
2R	14877421	2R_14877421_SNP [dm3] 2R_18989916_SNP [dm6]	A	C	4.854e^-4	0.98	INTRON tn
3L	10969692	3L_10969692_SNP [dm3] 3L_10976592_SNP [dm6]	G	T	4.862e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_cad
2R	20366347	2R_20366347_SNP [dm3] 2R_24478824_SNP [dm6]	A	T	4.863e^-4	0.98	INTRON CG13579
3R	9679902	3R_9679902_SNP [dm3] 3R_13854180_SNP [dm6]	A	G	4.868e^-4	0.98	DOWNSTREAM CG14362 INTERGENIC	TF binding site mE1_TFBS_inv
3R	8268696	3R_8268696_SNP [dm3] 3R_12442974_SNP [dm6]	C	A	4.876e^-4	0.98	UPSTREAM Desat1 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6914114	2R_6914114_DEL [dm3] 2R_11026609_DEL [dm6]	TC	T	4.877e^-4	0.98	INTRON luna
3R	23279513	3R_23279513_SNP [dm3] 3R_27453791_SNP [dm6]	C	G	4.885e^-4	0.98	INTERGENIC
3R	4157247	3R_4157247_SNP [dm3] 3R_8331525_SNP [dm6]	G	A	4.898e^-4	0.98	INTRON Poxm	TF binding site mE1_TFBS_HSA
2R	14664192	2R_14664192_SNP [dm3] 2R_18776687_SNP [dm6]	A	G	4.899e^-4	0.98	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8281484	2L_8281484_SNP [dm3] 2L_8281484_SNP [dm6]	C	A	4.915e^-4	0.98	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22599785	3L_22599785_SNP [dm3] 3L_22606685_SNP [dm6]	A	G	4.915e^-4	0.98	NON_SYNONYMOUS_CODING CG6914 INTRON CG14459	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14258913	2L_14258913_SNP [dm3] 2L_14258913_SNP [dm6]	T	G	4.917e^-4	0.98	INTERGENIC
3L	5243605	3L_5243605_DEL [dm3] 3L_5250505_DEL [dm6]	AT	A	4.922e^-4	0.98	INTRON shep
2L	14387352	2L_14387352_SNP [dm3] 2L_14387352_SNP [dm6]	T	C	4.941e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA
X	9706719	X_9706719_SNP [dm3] X_9812686_SNP [dm6]	G	A	4.942e^-4	0.98	INTRON CG32698
2R	8932707	2R_8932707_SNP [dm3] 2R_13045202_SNP [dm6]	G	A	4.948e^-4	0.98	UTR_3_PRIME CG13323	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4511768	3L_4511768_SNP [dm3] 3L_4511768_SNP [dm6]	C	T	4.956e^-4	0.98	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18614947	3R_18614947_SNP [dm3] 3R_22789225_SNP [dm6]	G	T	4.956e^-4	0.98	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18614997	3R_18614997_SNP [dm3] 3R_22789275_SNP [dm6]	T	G	4.956e^-4	0.98	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11044189	2R_11044189_SNP [dm3] 2R_15156684_SNP [dm6]	A	T	4.967e^-4	0.98	INTRON igl
X	9476888	X_9476888_SNP [dm3] X_9582855_SNP [dm6]	A	G	4.970e^-4	0.98	UPSTREAM CR45540 INTERGENIC
X	14050562	X_14050562_SNP [dm3] X_14156529_SNP [dm6]	T	C	4.971e^-4	0.98	INTERGENIC
3R	1518866	3R_1518866_SNP [dm3] 3R_5693144_SNP [dm6]	C	T	4.976e^-4	0.98	NON_SYNONYMOUS_CODING CG2104 INTRON plx
2R	15681926	2R_15681926_SNP [dm3] 2R_19794421_SNP [dm6]	T	C	4.978e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	8892891	2R_8892891_SNP [dm3] 2R_13005386_SNP [dm6]	A	G	4.988e^-4	0.98	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl
2R	18611667	2R_18611667_SNP [dm3] 2R_22724162_SNP [dm6]	A	C	4.994e^-4	0.98	SPLICE_SITE_REGION jbug INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	10008502	2L_10008502_SNP [dm3] 2L_10008502_SNP [dm6]	A	C	5.005e^-4	0.98	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
3L	4806053	3L_4806053_SNP [dm3] 3L_4806053_SNP [dm6]	G	T	5.009e^-4	0.98	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10008429	2L_10008429_INS [dm3] 2L_10008429_INS [dm6]	T	AA	5.012e^-4	0.98	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
3L	12790305	3L_12790305_SNP [dm3] 3L_12797205_SNP [dm6]	G	C	5.013e^-4	0.98	INTRON Atg1
3L	12790306	3L_12790306_SNP [dm3] 3L_12797206_SNP [dm6]	C	A	5.013e^-4	0.98	INTRON Atg1
3R	27018806	3R_27018806_SNP [dm3] 3R_31193084_SNP [dm6]	C	A	5.017e^-4	0.98	UPSTREAM bnk INTRON mesh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14228496	2R_14228496_SNP [dm3] 2R_18340991_SNP [dm6]	T	G	5.018e^-4	0.98	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14261055	2R_14261055_INS [dm3] 2R_18373550_INS [dm6]	T	TT	5.024e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8073568	3L_8073568_SNP [dm3] 3L_8080468_SNP [dm6]	C	T	5.036e^-4	0.98	INTRON Ect4	TF binding site BDTNP1_TFBS_dl
3L	16740337	3L_16740337_SNP [dm3] 3L_16747237_SNP [dm6]	G	A	5.038e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2264646	2L_2264646_SNP [dm3] 2L_2264646_SNP [dm6]	G	A	5.047e^-4	0.98	NON_SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
2R	5743907	2R_5743907_INS [dm3] 2R_9856402_INS [dm6]	T	TT	5.047e^-4	0.98	UTR_5_PRIME CG1516 INTRON CG1516
3R	19522825	3R_19522825_SNP [dm3] 3R_23697103_SNP [dm6]	T	C	5.051e^-4	0.98	SYNONYMOUS_CODING prt UPSTREAM CG10252	TF binding site mE1_TFBS_cad
2R	11684101	2R_11684101_SNP [dm3] 2R_15796596_SNP [dm6]	G	C	5.053e^-4	0.98	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7889358	2L_7889358_SNP [dm3] 2L_7889358_SNP [dm6]	A	G	5.065e^-4	0.98	UTR_3_PRIME Spn28Db UPSTREAM Spn28Da
3L	16229770	3L_16229770_SNP [dm3] 3L_16236670_SNP [dm6]	T	G	5.067e^-4	0.98	UTR_3_PRIME l_3_72Dp
3L	5952929	3L_5952929_SNP [dm3] 3L_5959829_SNP [dm6]	C	G	5.072e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2277460	X_2277460_DEL [dm3] X_2383427_DEL [dm6]	AA	A	5.072e^-4	0.98	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15086440	2R_15086440_SNP [dm3] 2R_19198935_SNP [dm6]	T	C	5.080e^-4	0.98	INTRON hppy
3L	12068825	3L_12068825_DEL [dm3] 3L_12075725_DEL [dm6]	CC	C	5.087e^-4	0.98	INTRON Sema-5c
3L	948612	3L_948612_SNP [dm3] 3L_948612_SNP [dm6]	A	C	5.089e^-4	0.98	INTRON Glut1
2R	9009471	2R_9009471_SNP [dm3] 2R_13121966_SNP [dm6]	C	A	5.101e^-4	0.98	INTRON CG13325
2L	9553490	2L_9553490_SNP [dm3] 2L_9553490_SNP [dm6]	A	G	5.106e^-4	0.98	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	2264696	2L_2264696_SNP [dm3] 2L_2264696_SNP [dm6]	A	T	5.111e^-4	0.98	NON_SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
2L	15607473	2L_15607473_SNP [dm3] 2L_15607473_SNP [dm6]	G	C	5.115e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	6306660	2L_6306660_DEL [dm3] 2L_6306660_DEL [dm6]	ATATA	A	5.122e^-4	0.98	INTRON Ddr
2L	7122653	2L_7122653_SNP [dm3] 2L_7122653_SNP [dm6]	C	G	5.137e^-4	0.98	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	26514008	3R_26514008_SNP [dm3] 3R_30688286_SNP [dm6]	A	G	5.137e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17430071	3R_17430071_INS [dm3] 3R_21604349_INS [dm6]	A	AA	5.139e^-4	0.98	INTRON InR	TF binding site BDTNP1_TFBS_dl
X	13481682	X_13481682_SNP [dm3] X_13587649_SNP [dm6]	G	A	5.146e^-4	0.98	INTRON Tango13
3L	2694707	3L_2694707_SNP [dm3] 3L_2694707_SNP [dm6]	G	T	5.153e^-4	0.98	INTRON Fife
X	3258561	X_3258561_DEL [dm3] X_3364528_DEL [dm6]	AA	A	5.156e^-4	0.98	INTERGENIC
3R	22406471	3R_22406471_SNP [dm3] 3R_26580749_SNP [dm6]	G	A	5.163e^-4	0.98	SYNONYMOUS_CODING scrib	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14871562	2R_14871562_SNP [dm3] 2R_18984057_SNP [dm6]	T	C	5.170e^-4	0.98	INTERGENIC
2R	18618368	2R_18618368_SNP [dm3] 2R_22730863_SNP [dm6]	A	G	5.170e^-4	0.98	SYNONYMOUS_CODING jbug
3R	23445051	3R_23445051_SNP [dm3] 3R_27619329_SNP [dm6]	G	C	5.172e^-4	0.98	INTRON Tusp
2L	3416612	2L_3416612_SNP [dm3] 2L_3416612_SNP [dm6]	A	G	5.182e^-4	0.98	UPSTREAM CG31952 INTRON pgant2
3L	14498018	3L_14498018_SNP [dm3] 3L_14504918_SNP [dm6]	T	C	5.195e^-4	0.98	INTRON bbg
2L	5409004	2L_5409004_SNP [dm3] 2L_5409004_SNP [dm6]	G	T	5.195e^-4	0.98	INTRON H15
3R	18700277	3R_18700277_SNP [dm3] 3R_22874555_SNP [dm6]	G	A	5.196e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	18841872	3R_18841872_SNP [dm3] 3R_23016150_SNP [dm6]	T	C	5.213e^-4	0.98	DOWNSTREAM CG6688 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	8095776	2L_8095776_SNP [dm3] 2L_8095776_SNP [dm6]	G	A	5.224e^-4	0.98	INTRON Bsg
2R	8564875	2R_8564875_SNP [dm3] 2R_12677370_SNP [dm6]	T	C	5.225e^-4	0.98	UPSTREAM CG42708 INTRON CG42708
3L	9137849	3L_9137849_SNP [dm3] 3L_9144749_SNP [dm6]	G	T	5.229e^-4	0.98	UTR_3_PRIME nwk DOWNSTREAM mir-4940
3R	6157321	3R_6157321_SNP [dm3] 3R_10331599_SNP [dm6]	G	T	5.232e^-4	0.98	UTR_5_PRIME CG12818 UPSTREAM Bruce	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
3L	8874383	3L_8874383_SNP [dm3] 3L_8881283_SNP [dm6]	G	A	5.232e^-4	0.98	INTRON dally
3R	23541974	3R_23541974_SNP [dm3] 3R_27716252_SNP [dm6]	T	G	5.234e^-4	0.98	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.337e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.8029	0.0333

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1820 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	14362981	2R_14362981_SNP [dm3] 2R_18475476_SNP [dm6]	A	G	1.556e^-6	0.742	INTRON CG30116
2L	9146166	2L_9146166_SNP [dm3] 2L_9146166_SNP [dm6]	T	C	1.608e^-6	0.742	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8590205	2R_8590205_SNP [dm3] 2R_12702700_SNP [dm6]	A	G	2.060e^-6	0.742	INTERGENIC
3R	9133048	3R_9133048_INS [dm3] 3R_13307326_INS [dm6]	C	CC	2.787e^-6	0.742	INTRON CG32473
X	18515383	X_18515383_SNP [dm3] X_18621350_SNP [dm6]	A	G	2.934e^-6	0.742	UPSTREAM CR43289 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	18515430	X_18515430_SNP [dm3] X_18621397_SNP [dm6]	G	A	2.934e^-6	0.742	UPSTREAM CR43289 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8061395	3L_8061395_DEL [dm3] 3L_8068295_DEL [dm6]	AAAAATC	A	3.200e^-6	0.742	UPSTREAM tRNA:CR32363 DOWNSTREAM CG42590 INTRON Ect4
3L	6395533	3L_6395533_SNP [dm3] 3L_6402433_SNP [dm6]	G	A	3.326e^-6	0.742	INTRON CG42747
2R	9127677	2R_9127677_SNP [dm3] 2R_13240172_SNP [dm6]	T	C	3.817e^-6	0.742	SYNONYMOUS_CODING GstE14 UPSTREAM CG4679	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16123454	2R_16123454_SNP [dm3] 2R_20235949_SNP [dm6]	A	G	5.315e^-6	0.742	UPSTREAM CG11099 DOWNSTREAM CG44624 & 1 other INTERGENIC
2R	15132532	2R_15132532_SNP [dm3] 2R_19245027_SNP [dm6]	T	C	6.108e^-6	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	9626708	2L_9626708_SNP [dm3] 2L_9626708_SNP [dm6]	T	C	6.148e^-6	0.742	INTERGENIC
3L	6396976	3L_6396976_SNP [dm3] 3L_6403876_SNP [dm6]	G	A	6.315e^-6	0.742	INTRON CG42747
X	3361810	X_3361810_SNP [dm3] X_3467777_SNP [dm6]	T	G	6.324e^-6	0.742	INTRON CR44999 & 1 other
2L	9626710	2L_9626710_SNP [dm3] 2L_9626710_SNP [dm6]	C	T	6.670e^-6	0.742	INTERGENIC
3R	8115290	3R_8115290_INS [dm3] 3R_12289568_INS [dm6]	C	CA	7.112e^-6	0.742	INTRON svp	TF binding site mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
3L	3917688	3L_3917688_SNP [dm3] 3L_3917688_SNP [dm6]	A	T	7.471e^-6	0.742	INTRON Eip63F-1
2R	20371274	2R_20371274_SNP [dm3] 2R_24483751_SNP [dm6]	T	C	7.532e^-6	0.742	INTRON CG13579
X	3361813	X_3361813_SNP [dm3] X_3467780_SNP [dm6]	C	A	9.196e^-6	0.742	INTRON CR44999 & 1 other
3L	18540534	3L_18540534_SNP [dm3] 3L_18547434_SNP [dm6]	A	G	9.362e^-6	0.742	INTERGENIC
3L	6396334	3L_6396334_SNP [dm3] 3L_6403234_SNP [dm6]	G	C	9.794e^-6	0.742	INTRON CG42747
3L	8844373	3L_8844373_SNP [dm3] 3L_8851273_SNP [dm6]	T	A	1.019e^-5	0.742	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8590173	2R_8590173_SNP [dm3] 2R_12702668_SNP [dm6]	A	C	1.030e^-5	0.742	INTERGENIC
2L	11182241	2L_11182241_SNP [dm3] 2L_11182241_SNP [dm6]	C	A	1.052e^-5	0.742	INTRON Ca-beta	TF binding site mE1_TFBS_cad
3L	6396908	3L_6396908_SNP [dm3] 3L_6403808_SNP [dm6]	T	A	1.072e^-5	0.742	INTRON CG42747
2L	3136648	2L_3136648_SNP [dm3] 2L_3136648_SNP [dm6]	C	G	1.122e^-5	0.742	INTRON toc
3L	8844389	3L_8844389_SNP [dm3] 3L_8851289_SNP [dm6]	G	A	1.183e^-5	0.742	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	18591365	2R_18591365_SNP [dm3] 2R_22703860_SNP [dm6]	T	G	1.256e^-5	0.742	UPSTREAM Obp58b DOWNSTREAM Obp59a INTRON CG30259
2R	5778633	2R_5778633_SNP [dm3] 2R_9891128_SNP [dm6]	G	A	1.294e^-5	0.742	UTR_3_PRIME CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
3L	6396925	3L_6396925_SNP [dm3] 3L_6403825_SNP [dm6]	A	T	1.316e^-5	0.742	INTRON CG42747
2L	11182285	2L_11182285_SNP [dm3] 2L_11182285_SNP [dm6]	A	T	1.332e^-5	0.742	INTRON Ca-beta
2L	6892213	2L_6892213_SNP [dm3] 2L_6892213_SNP [dm6]	G	A	1.357e^-5	0.742	INTRON Nlg2
2R	5778464	2R_5778464_SNP [dm3] 2R_9890959_SNP [dm6]	T	C	1.381e^-5	0.742	SYNONYMOUS_CODING CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_sens
2R	16934511	2R_16934511_INS [dm3] 2R_21047006_INS [dm6]	C	CA	1.411e^-5	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19627703	2R_19627703_SNP [dm3] 2R_23740180_SNP [dm6]	G	A	1.420e^-5	0.742	INTRON egl
3R	8115292	3R_8115292_SNP [dm3] 3R_12289570_SNP [dm6]	T	A	1.441e^-5	0.742	INTRON svp	TF binding site mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
3R	3793558	3R_3793558_SNP [dm3] 3R_7967836_SNP [dm6]	C	A	1.515e^-5	0.742	UPSTREAM dsx INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10156732	3L_10156732_SNP [dm3] 3L_10163632_SNP [dm6]	A	G	1.625e^-5	0.742	INTRON dpr10
2R	4694498	2R_4694498_SNP [dm3] 2R_8806993_SNP [dm6]	T	A	1.628e^-5	0.742	INTRON sns
X	21321224	X_21321224_SNP [dm3] X_21450197_SNP [dm6]	G	A	1.636e^-5	0.742	INTRON CG42343	TF binding site mE1_TFBS_HSA
3R	3793673	3R_3793673_SNP [dm3] 3R_7967951_SNP [dm6]	G	A	1.670e^-5	0.742	UPSTREAM dsx INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16123366	2R_16123366_SNP [dm3] 2R_20235861_SNP [dm6]	C	A	1.710e^-5	0.742	UTR_3_PRIME CG44625 UPSTREAM CG11099 DOWNSTREAM CG11044 & 1 other
X	19377247	X_19377247_SNP [dm3] X_19483214_SNP [dm6]	G	A	1.736e^-5	0.742	SYNONYMOUS_CODING Nat1	TF binding site mE1_TFBS_cad
3L	11228461	3L_11228461_INS [dm3] 3L_11235361_INS [dm6]	A	AA	1.786e^-5	0.742	INTRON Ir68a
3L	14016624	3L_14016624_INS [dm3] 3L_14023524_INS [dm6]	T	TT	1.819e^-5	0.742	INTRON ptip	TF binding site mE1_TFBS_chinmo
3L	6088380	3L_6088380_SNP [dm3] 3L_6095280_SNP [dm6]	C	T	1.903e^-5	0.742	SYNONYMOUS_CODING loj UPSTREAM CG10467	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	13210675	X_13210675_SNP [dm3] X_13316642_SNP [dm6]	G	A	1.922e^-5	0.742	INTRON IP3K2
3L	3779254	3L_3779254_SNP [dm3] 3L_3779254_SNP [dm6]	G	A	1.958e^-5	0.742	INTRON CG32264
2L	6892180	2L_6892180_INS [dm3] 2L_6892180_INS [dm6]	T	TT	1.990e^-5	0.742	INTRON Nlg2
3R	15014561	3R_15014561_SNP [dm3] 3R_19188839_SNP [dm6]	G	T	1.995e^-5	0.742	INTRON CG31475
2R	5783798	2R_5783798_SNP [dm3] 2R_9896293_SNP [dm6]	G	T	2.052e^-5	0.742	NON_SYNONYMOUS_CODING CG30007
3R	20215264	3R_20215264_SNP [dm3] 3R_24389542_SNP [dm6]	A	T	2.128e^-5	0.742	INTRON CG5768
2L	3123607	2L_3123607_SNP [dm3] 2L_3123607_SNP [dm6]	A	C	2.146e^-5	0.742	INTRON toc
3L	14774404	3L_14774404_SNP [dm3] 3L_14781304_SNP [dm6]	G	A	2.185e^-5	0.742	INTRON bmm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6892215	2L_6892215_SNP [dm3] 2L_6892215_SNP [dm6]	G	A	2.186e^-5	0.742	INTRON Nlg2
2R	19124991	2R_19124991_SNP [dm3] 2R_23237468_SNP [dm6]	G	T	2.216e^-5	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7544296	3L_7544296_SNP [dm3] 3L_7551196_SNP [dm6]	T	A	2.294e^-5	0.755	INTERGENIC
3L	14019004	3L_14019004_SNP [dm3] 3L_14025904_SNP [dm6]	C	T	2.387e^-5	0.76	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo
2R	5660433	2R_5660433_SNP [dm3] 2R_9772928_SNP [dm6]	G	A	2.449e^-5	0.76	INTRON CG1688
2L	15752258	2L_15752258_SNP [dm3] 2L_15752258_SNP [dm6]	A	T	2.452e^-5	0.76	UPSTREAM l_2_35Df & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6234590	2L_6234590_SNP [dm3] 2L_6234590_SNP [dm6]	A	G	2.509e^-5	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	16934507	2R_16934507_DEL [dm3] 2R_21047002_DEL [dm6]	AG	A	2.513e^-5	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8177250	X_8177250_SNP [dm3] X_8283217_SNP [dm6]	A	C	2.608e^-5	0.767	INTRON nAChRalpha3
2L	15096099	2L_15096099_SNP [dm3] 2L_15096099_SNP [dm6]	A	T	2.646e^-5	0.767	UTR_3_PRIME CG15270
2L	11788054	2L_11788054_SNP [dm3] 2L_11788054_SNP [dm6]	T	A	2.715e^-5	0.767	UPSTREAM CG14931 INTERGENIC
2L	8851663	2L_8851663_SNP [dm3] 2L_8851663_SNP [dm6]	A	G	2.754e^-5	0.767	DOWNSTREAM CR45365 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	16093245	2R_16093245_SNP [dm3] 2R_20205740_SNP [dm6]	C	G	2.757e^-5	0.767	INTERGENIC
2L	11182257	2L_11182257_SNP [dm3] 2L_11182257_SNP [dm6]	C	A	2.835e^-5	0.767	INTRON Ca-beta
2R	16077020	2R_16077020_SNP [dm3] 2R_20189515_SNP [dm6]	T	A	2.902e^-5	0.767	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8504954	2L_8504954_SNP [dm3] 2L_8504954_SNP [dm6]	T	C	2.941e^-5	0.767	INTRON Dh31
2L	11182256	2L_11182256_SNP [dm3] 2L_11182256_SNP [dm6]	T	G	2.959e^-5	0.767	INTRON Ca-beta
2L	14865403	2L_14865403_SNP [dm3] 2L_14865403_SNP [dm6]	C	A	2.998e^-5	0.767	INTERGENIC
2L	6892231	2L_6892231_SNP [dm3] 2L_6892231_SNP [dm6]	T	A	3.013e^-5	0.767	INTRON Nlg2
2R	16934520	2R_16934520_SNP [dm3] 2R_21047015_SNP [dm6]	T	C	3.050e^-5	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15102673	2L_15102673_SNP [dm3] 2L_15102673_SNP [dm6]	T	C	3.157e^-5	0.767	INTERGENIC
2R	5777267	2R_5777267_SNP [dm3] 2R_9889762_SNP [dm6]	G	A	3.215e^-5	0.767	UPSTREAM CG30008 DOWNSTREAM CG12923 INTRON CG1513
3L	6562922	3L_6562922_SNP [dm3] 3L_6569822_SNP [dm6]	A	G	3.272e^-5	0.767	INTRON CG18769 & 1 other
2L	22092119	2L_22092119_SNP [dm3] 2L_22092119_SNP [dm6]	T	A	3.312e^-5	0.767	INTERGENIC	transposable element FlyBase
2R	16090571	2R_16090571_SNP [dm3] 2R_20203066_SNP [dm6]	G	A	3.327e^-5	0.767	INTERGENIC
2R	16092417	2R_16092417_SNP [dm3] 2R_20204912_SNP [dm6]	G	A	3.327e^-5	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	5778647	2R_5778647_SNP [dm3] 2R_9891142_SNP [dm6]	A	G	3.475e^-5	0.767	UPSTREAM CG30007 DOWNSTREAM CG30008 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
3L	6396416	3L_6396416_SNP [dm3] 3L_6403316_SNP [dm6]	G	A	3.546e^-5	0.767	INTRON CG42747
2L	10643318	2L_10643318_SNP [dm3] 2L_10643318_SNP [dm6]	G	A	3.554e^-5	0.767	SYNONYMOUS_CODING CG31872 UPSTREAM CG18284
2R	19236942	2R_19236942_SNP [dm3] 2R_23349419_SNP [dm6]	G	C	3.589e^-5	0.767	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10156717	3L_10156717_SNP [dm3] 3L_10163617_SNP [dm6]	C	T	3.593e^-5	0.767	INTRON dpr10
3R	22900602	3R_22900602_SNP [dm3] 3R_27074880_SNP [dm6]	A	C	3.630e^-5	0.767	UPSTREAM CG14257 INTERGENIC
3L	14935610	3L_14935610_SNP [dm3] 3L_14942510_SNP [dm6]	C	A	3.656e^-5	0.767	UTR_3_PRIME DCX-EMAP DOWNSTREAM DCX-EMAP
2L	7077593	2L_7077593_SNP [dm3] 2L_7077593_SNP [dm6]	T	G	3.662e^-5	0.767	INTRON Pvf2
3L	6396442	3L_6396442_SNP [dm3] 3L_6403342_SNP [dm6]	T	C	3.666e^-5	0.767	INTRON CG42747
2R	18594193	2R_18594193_SNP [dm3] 2R_22706688_SNP [dm6]	C	A	3.697e^-5	0.767	UPSTREAM Obp58d & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	6396662	3L_6396662_SNP [dm3] 3L_6403562_SNP [dm6]	A	G	3.721e^-5	0.767	INTRON CG42747
3L	6395564	3L_6395564_SNP [dm3] 3L_6402464_SNP [dm6]	G	A	3.798e^-5	0.773	INTRON CG42747
3L	9395675	3L_9395675_SNP [dm3] 3L_9402575_SNP [dm6]	G	A	3.833e^-5	0.773	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	20702722	2L_20702722_SNP [dm3] 2L_20702722_SNP [dm6]	G	A	3.882e^-5	0.775	INTRON Hr38
2R	14853614	2R_14853614_SNP [dm3] 2R_18966109_SNP [dm6]	G	A	3.998e^-5	0.781	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14853784	2R_14853784_SNP [dm3] 2R_18966279_SNP [dm6]	G	A	3.998e^-5	0.781	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11780691	2L_11780691_SNP [dm3] 2L_11780691_SNP [dm6]	C	T	4.053e^-5	0.784	INTERGENIC
2R	18630975	2R_18630975_SNP [dm3] 2R_22743470_SNP [dm6]	G	T	4.099e^-5	0.784	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11182304	2L_11182304_SNP [dm3] 2L_11182304_SNP [dm6]	T	G	4.307e^-5	0.793	INTRON Ca-beta
2R	14362989	2R_14362989_SNP [dm3] 2R_18475484_SNP [dm6]	A	C	4.376e^-5	0.793	INTRON CG30116
2L	15102065	2L_15102065_SNP [dm3] 2L_15102065_SNP [dm6]	T	A	4.500e^-5	0.793	INTERGENIC
2R	9136386	2R_9136386_SNP [dm3] 2R_13248881_SNP [dm6]	C	T	4.579e^-5	0.793	DOWNSTREAM CG4712 & 1 other INTERGENIC
3R	20444949	3R_20444949_SNP [dm3] 3R_24619227_SNP [dm6]	G	C	4.583e^-5	0.793	SYNONYMOUS_CODING mld	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16294534	2R_16294534_SNP [dm3] 2R_20407029_SNP [dm6]	A	C	4.706e^-5	0.793	INTERGENIC
3L	9298832	3L_9298832_DEL [dm3] 3L_9305732_DEL [dm6]	ACC	A	4.750e^-5	0.793	INTERGENIC
2L	14791494	2L_14791494_SNP [dm3] 2L_14791494_SNP [dm6]	C	A	4.765e^-5	0.793	INTERGENIC
2R	14172296	2R_14172296_SNP [dm3] 2R_18284791_SNP [dm6]	G	A	4.865e^-5	0.793	DOWNSTREAM sbb INTRON sbb
2R	5661164	2R_5661164_SNP [dm3] 2R_9773659_SNP [dm6]	A	G	4.956e^-5	0.793	INTRON CG1688
2R	19125018	2R_19125018_SNP [dm3] 2R_23237495_SNP [dm6]	A	T	5.028e^-5	0.793	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19645189	2R_19645189_SNP [dm3] 2R_23757666_SNP [dm6]	C	T	5.050e^-5	0.793	INTRON CG9850
3L	19512956	3L_19512956_SNP [dm3] 3L_19519856_SNP [dm6]	T	C	5.060e^-5	0.793	SYNONYMOUS_CODING Cpr76Bb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9119182	3R_9119182_SNP [dm3] 3R_13293460_SNP [dm6]	A	G	5.112e^-5	0.793	UPSTREAM wntD INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
X	19370386	X_19370386_SNP [dm3] X_19476353_SNP [dm6]	A	G	5.127e^-5	0.793	DOWNSTREAM CG12200 INTRON CG32533	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20366150	2R_20366150_SNP [dm3] 2R_24478627_SNP [dm6]	C	T	5.131e^-5	0.793	INTRON CG13579
X	20880672	X_20880672_DEL [dm3] X_21009645_DEL [dm6]	AGATGAGGAAAAACTA...	A	5.152e^-5	0.793	INTERGENIC
2R	5666304	2R_5666304_SNP [dm3] 2R_9778799_SNP [dm6]	G	A	5.153e^-5	0.793	INTRON CG1688
2L	6892126	2L_6892126_SNP [dm3] 2L_6892126_SNP [dm6]	G	C	5.210e^-5	0.793	INTRON Nlg2
3R	3796319	3R_3796319_SNP [dm3] 3R_7970597_SNP [dm6]	A	T	5.214e^-5	0.793	INTERGENIC
3L	18213011	3L_18213011_INS [dm3] 3L_18219911_INS [dm6]	C	CCGGGGC	5.388e^-5	0.793	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
3L	6433847	3L_6433847_SNP [dm3] 3L_6440747_SNP [dm6]	A	C	5.406e^-5	0.793	INTRON CG42747
2R	14172307	2R_14172307_SNP [dm3] 2R_18284802_SNP [dm6]	T	A	5.427e^-5	0.793	DOWNSTREAM sbb INTRON sbb
3L	15650062	3L_15650062_SNP [dm3] 3L_15656962_SNP [dm6]	C	A	5.428e^-5	0.793	UPSTREAM Eig71Ee & 1 other INTRON Eig71Ef
3L	6396438	3L_6396438_SNP [dm3] 3L_6403338_SNP [dm6]	G	C	5.449e^-5	0.793	INTRON CG42747
2R	3723235	2R_3723235_SNP [dm3] 2R_7835730_SNP [dm6]	C	T	5.526e^-5	0.793	UTR_3_PRIME Dgk DOWNSTREAM Atg10 & 1 other
3L	7632980	3L_7632980_SNP [dm3] 3L_7639880_SNP [dm6]	C	A	5.613e^-5	0.793	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
2R	7958925	2R_7958925_SNP [dm3] 2R_12071420_SNP [dm6]	A	G	5.621e^-5	0.793	INTRON CG8888
3L	9179724	3L_9179724_SNP [dm3] 3L_9186624_SNP [dm6]	G	A	5.649e^-5	0.793	INTERGENIC
2L	6892191	2L_6892191_SNP [dm3] 2L_6892191_SNP [dm6]	C	T	5.684e^-5	0.793	INTRON Nlg2
2L	5882139	2L_5882139_SNP [dm3] 2L_5882139_SNP [dm6]	C	G	5.690e^-5	0.793	INTERGENIC	regulatory region REDfly_CRMs
3R	15013533	3R_15013533_SNP [dm3] 3R_19187811_SNP [dm6]	C	T	5.707e^-5	0.793	INTRON CG31475
2R	9139044	2R_9139044_SNP [dm3] 2R_13251539_SNP [dm6]	C	T	5.723e^-5	0.793	SYNONYMOUS_CODING CG4712 UTR_5_PRIME CG4712 DOWNSTREAM CG4714
X	19065247	X_19065247_SNP [dm3] X_19171214_SNP [dm6]	G	T	5.773e^-5	0.793	UPSTREAM Inx5 EXON pncr004:X	TF binding site mE1_TFBS_cnc
2L	8024656	2L_8024656_SNP [dm3] 2L_8024656_SNP [dm6]	G	T	5.790e^-5	0.793	SYNONYMOUS_CODING Tg	TF binding site mE1_TFBS_sens
2R	6397759	2R_6397759_SNP [dm3] 2R_10510254_SNP [dm6]	T	G	5.892e^-5	0.793	DOWNSTREAM lola INTRON lola
3L	8844429	3L_8844429_SNP [dm3] 3L_8851329_SNP [dm6]	A	G	5.920e^-5	0.793	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	14134799	2R_14134799_SNP [dm3] 2R_18247294_SNP [dm6]	C	T	5.937e^-5	0.793	UPSTREAM CR44420 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	11182286	2L_11182286_SNP [dm3] 2L_11182286_SNP [dm6]	C	G	5.972e^-5	0.793	INTRON Ca-beta
3L	9395676	3L_9395676_SNP [dm3] 3L_9402576_SNP [dm6]	T	C	5.976e^-5	0.793	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	13918673	3L_13918673_SNP [dm3] 3L_13925573_SNP [dm6]	A	G	5.981e^-5	0.793	UPSTREAM Rgl DOWNSTREAM CG8833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7275028	2R_7275028_SNP [dm3] 2R_11387523_SNP [dm6]	T	C	5.989e^-5	0.793	INTRON sprt & 1 other
3R	3793160	3R_3793160_SNP [dm3] 3R_7967438_SNP [dm6]	A	T	6.087e^-5	0.793	UPSTREAM dsx INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	21264908	3R_21264908_SNP [dm3] 3R_25439186_SNP [dm6]	A	T	6.153e^-5	0.793	INTRON Fur1
3L	7785825	3L_7785825_SNP [dm3] 3L_7792725_SNP [dm6]	A	T	6.230e^-5	0.793	INTRON CG32369
3L	13918918	3L_13918918_SNP [dm3] 3L_13925818_SNP [dm6]	A	G	6.261e^-5	0.793	UPSTREAM Rgl DOWNSTREAM CG8833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	3793115	3R_3793115_SNP [dm3] 3R_7967393_SNP [dm6]	A	C	6.358e^-5	0.793	START_GAINED dsx UTR_5_PRIME dsx	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	15102674	2L_15102674_DEL [dm3] 2L_15102674_DEL [dm6]	TTCA	T	6.441e^-5	0.793	INTERGENIC
2L	10008429	2L_10008429_INS [dm3] 2L_10008429_INS [dm6]	T	AA	6.510e^-5	0.793	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
3L	14499583	3L_14499583_SNP [dm3] 3L_14506483_SNP [dm6]	C	T	6.510e^-5	0.793	INTRON bbg
2L	11182244	2L_11182244_SNP [dm3] 2L_11182244_SNP [dm6]	C	A	6.536e^-5	0.793	INTRON Ca-beta	TF binding site mE1_TFBS_cad
2L	11182465	2L_11182465_SNP [dm3] 2L_11182465_SNP [dm6]	A	G	6.554e^-5	0.793	INTRON Ca-beta
3L	3951230	3L_3951230_SNP [dm3] 3L_3951230_SNP [dm6]	A	G	6.609e^-5	0.793	UTR_3_PRIME CG14984
2L	15519385	2L_15519385_SNP [dm3] 2L_15519385_SNP [dm6]	A	G	6.634e^-5	0.793	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11182282	2L_11182282_SNP [dm3] 2L_11182282_SNP [dm6]	C	A	6.648e^-5	0.793	INTRON Ca-beta
2L	11182283	2L_11182283_SNP [dm3] 2L_11182283_SNP [dm6]	A	T	6.648e^-5	0.793	INTRON Ca-beta
2R	5687400	2R_5687400_SNP [dm3] 2R_9799895_SNP [dm6]	C	T	6.682e^-5	0.793	INTRON CG1688
3L	18612078	3L_18612078_SNP [dm3] 3L_18618978_SNP [dm6]	A	G	6.703e^-5	0.793	UTR_3_PRIME not DOWNSTREAM tRNA:CR32200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18534250	3L_18534250_SNP [dm3] 3L_18541150_SNP [dm6]	G	T	6.708e^-5	0.793	INTERGENIC
3L	8844422	3L_8844422_SNP [dm3] 3L_8851322_SNP [dm6]	C	T	6.719e^-5	0.793	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19558196	2R_19558196_SNP [dm3] 2R_23670673_SNP [dm6]	G	A	6.722e^-5	0.793	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3793072	3R_3793072_SNP [dm3] 3R_7967350_SNP [dm6]	A	T	6.788e^-5	0.794	UTR_5_PRIME dsx	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	9138962	2R_9138962_SNP [dm3] 2R_13251457_SNP [dm6]	A	G	6.876e^-5	0.794	NON_SYNONYMOUS_CODING CG4712 SYNONYMOUS_CODING CG4712 DOWNSTREAM CG4714
3L	6396128	3L_6396128_SNP [dm3] 3L_6403028_SNP [dm6]	G	A	7.041e^-5	0.794	INTRON CG42747
3L	3782848	3L_3782848_SNP [dm3] 3L_3782848_SNP [dm6]	A	G	7.063e^-5	0.794	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	11182488	2L_11182488_DEL [dm3] 2L_11182488_DEL [dm6]	TACAAT	T	7.126e^-5	0.794	INTRON Ca-beta
2R	19236931	2R_19236931_SNP [dm3] 2R_23349408_SNP [dm6]	A	T	7.193e^-5	0.794	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10571389	3R_10571389_SNP [dm3] 3R_14745667_SNP [dm6]	G	T	7.282e^-5	0.794	DOWNSTREAM smp-30 INTRON jvl	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3L	2609034	3L_2609034_SNP [dm3] 3L_2609034_SNP [dm6]	T	G	7.332e^-5	0.794	DOWNSTREAM Pxn INTRON Pxn
2R	2670740	2R_2670740_SNP [dm3] 2R_6783235_SNP [dm6]	T	C	7.340e^-5	0.794	INTRON Epac
3R	14130407	3R_14130407_SNP [dm3] 3R_18304685_SNP [dm6]	C	T	7.424e^-5	0.794	SYNONYMOUS_CODING PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9210985	3L_9210985_SNP [dm3] 3L_9217885_SNP [dm6]	C	G	7.435e^-5	0.794	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6892166	2L_6892166_SNP [dm3] 2L_6892166_SNP [dm6]	G	T	7.454e^-5	0.794	INTRON Nlg2
2R	19125050	2R_19125050_SNP [dm3] 2R_23237527_SNP [dm6]	T	C	7.464e^-5	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11182180	2L_11182180_SNP [dm3] 2L_11182180_SNP [dm6]	G	A	7.520e^-5	0.794	INTRON Ca-beta	TF binding site mE1_TFBS_cad
2L	12278409	2L_12278409_INS [dm3] 2L_12278409_INS [dm6]	A	AA	7.572e^-5	0.794	INTRON aret
2L	3136675	2L_3136675_SNP [dm3] 2L_3136675_SNP [dm6]	G	T	7.575e^-5	0.794	INTRON toc
3R	3792667	3R_3792667_SNP [dm3] 3R_7966945_SNP [dm6]	C	T	7.622e^-5	0.794	UTR_5_PRIME dsx	TF binding site mE1_TFBS_cad
2R	19125054	2R_19125054_SNP [dm3] 2R_23237531_SNP [dm6]	T	C	7.637e^-5	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3618981	X_3618981_SNP [dm3] X_3724948_SNP [dm6]	G	T	7.639e^-5	0.794	INTRON tlk
3L	3517970	3L_3517970_SNP [dm3] 3L_3517970_SNP [dm6]	G	A	7.641e^-5	0.794	INTRON Eip63E
3L	6396814	3L_6396814_SNP [dm3] 3L_6403714_SNP [dm6]	T	A	7.741e^-5	0.794	INTRON CG42747
2R	19125245	2R_19125245_SNP [dm3] 2R_23237722_SNP [dm6]	C	A	7.807e^-5	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14774449	3L_14774449_SNP [dm3] 3L_14781349_SNP [dm6]	A	G	7.813e^-5	0.794	INTRON bmm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9395702	3L_9395702_SNP [dm3] 3L_9402602_SNP [dm6]	C	T	7.935e^-5	0.794	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18565396	3L_18565396_SNP [dm3] 3L_18572296_SNP [dm6]	C	G	7.951e^-5	0.794	INTRON AstC-R1
2R	20385363	2R_20385363_SNP [dm3] 2R_24497840_SNP [dm6]	G	A	7.973e^-5	0.794	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12221840	2R_12221840_SNP [dm3] 2R_16334335_SNP [dm6]	C	G	8.008e^-5	0.794	UPSTREAM Vha44 INTRON Vha44
2R	4018673	2R_4018673_SNP [dm3] 2R_8131168_SNP [dm6]	G	A	8.088e^-5	0.794	UTR_5_PRIME Pbp49 & 1 other UPSTREAM Pabp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	5408350	2L_5408350_SNP [dm3] 2L_5408350_SNP [dm6]	G	A	8.137e^-5	0.794	INTRON H15	TF binding site mE1_TFBS_cad
2R	17109729	2R_17109729_SNP [dm3] 2R_21222224_SNP [dm6]	A	G	8.177e^-5	0.794	INTRON ASPP	TF binding site mE1_TFBS_cad
3R	15013581	3R_15013581_SNP [dm3] 3R_19187859_SNP [dm6]	G	A	8.185e^-5	0.794	INTRON CG31475
2R	11761612	2R_11761612_SNP [dm3] 2R_15874107_SNP [dm6]	C	T	8.228e^-5	0.794	INTRON sli	TF binding site BDTNP1_TFBS_sna
3R	15013611	3R_15013611_SNP [dm3] 3R_19187889_SNP [dm6]	A	G	8.334e^-5	0.794	INTRON CG31475
2R	8675341	2R_8675341_SNP [dm3] 2R_12787836_SNP [dm6]	T	C	8.347e^-5	0.794	INTRON sca EXON CR45137
3L	6396124	3L_6396124_SNP [dm3] 3L_6403024_SNP [dm6]	A	G	8.375e^-5	0.794	INTRON CG42747
2R	5783305	2R_5783305_SNP [dm3] 2R_9895800_SNP [dm6]	C	A	8.380e^-5	0.794	NON_SYNONYMOUS_CODING CG30007
3L	6086189	3L_6086189_SNP [dm3] 3L_6093089_SNP [dm6]	A	G	8.425e^-5	0.794	UTR_5_PRIME CG10469 DOWNSTREAM CG13293 & 1 other
2L	5065826	2L_5065826_DEL [dm3] 2L_5065826_DEL [dm6]	CTTCACAAC	C	8.430e^-5	0.794	UPSTREAM qtc INTRON qtc
2R	19476075	2R_19476075_SNP [dm3] 2R_23588552_SNP [dm6]	C	A	8.463e^-5	0.794	INTRON apt
2R	15880286	2R_15880286_DEL [dm3] 2R_19992781_DEL [dm6]	GGTAT	G	8.488e^-5	0.794	INTERGENIC
3R	15013593	3R_15013593_SNP [dm3] 3R_19187871_SNP [dm6]	T	C	8.493e^-5	0.794	INTRON CG31475
2R	12224026	2R_12224026_SNP [dm3] 2R_16336521_SNP [dm6]	G	A	8.508e^-5	0.794	UTR_5_PRIME Hmgs & 1 other UPSTREAM Hmgs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12223173	2R_12223173_SNP [dm3] 2R_16335668_SNP [dm6]	C	G	8.681e^-5	0.799	UPSTREAM Hmgs INTRON Vha44	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8294542	2R_8294542_SNP [dm3] 2R_12407037_SNP [dm6]	G	T	8.707e^-5	0.799	UTR_3_PRIME Cpr49Af UPSTREAM Cpr49Ag DOWNSTREAM Cpr49Af
3L	6396476	3L_6396476_SNP [dm3] 3L_6403376_SNP [dm6]	T	C	8.726e^-5	0.799	INTRON CG42747
2L	8024666	2L_8024666_SNP [dm3] 2L_8024666_SNP [dm6]	C	T	8.728e^-5	0.799	NON_SYNONYMOUS_CODING Tg	TF binding site mE1_TFBS_sens
2R	8928540	2R_8928540_SNP [dm3] 2R_13041035_SNP [dm6]	C	A	9.008e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	821639	3L_821639_SNP [dm3] 3L_821639_SNP [dm6]	A	T	9.074e^-5	0.822	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6137320	X_6137320_SNP [dm3] X_6243287_SNP [dm6]	T	G	9.127e^-5	0.823	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5004998	2L_5004998_SNP [dm3] 2L_5004998_SNP [dm6]	A	G	9.231e^-5	0.828	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
3L	7633457	3L_7633457_SNP [dm3] 3L_7640357_SNP [dm6]	A	G	9.313e^-5	0.832	DOWNSTREAM CG33275 & 2 others INTRON CG33276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14853597	2R_14853597_SNP [dm3] 2R_18966092_SNP [dm6]	C	G	9.388e^-5	0.832	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9543492	3L_9543492_SNP [dm3] 3L_9550392_SNP [dm6]	C	T	9.408e^-5	0.832	INTRON CG42673
X	14241875	X_14241875_SNP [dm3] X_14347842_SNP [dm6]	A	G	9.541e^-5	0.834	INTRON dpr8
3R	8326817	3R_8326817_SNP [dm3] 3R_12501095_SNP [dm6]	G	C	9.607e^-5	0.834	INTERGENIC
2L	5005067	2L_5005067_SNP [dm3] 2L_5005067_SNP [dm6]	A	T	9.629e^-5	0.834	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2R	14363162	2R_14363162_SNP [dm3] 2R_18475657_SNP [dm6]	C	A	9.632e^-5	0.834	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_HSA
3R	8012810	3R_8012810_INS [dm3] 3R_12187088_INS [dm6]	G	GCGCCACACAGG...	9.704e^-5	0.834	INTERGENIC
2R	5651095	2R_5651095_SNP [dm3] 2R_9763590_SNP [dm6]	C	T	9.787e^-5	0.834	SYNONYMOUS_CODING trpl	TF binding site mE1_TFBS_cad
3R	3690089	3R_3690089_SNP [dm3] 3R_7864367_SNP [dm6]	C	T	9.807e^-5	0.834	SYNONYMOUS_CODING CG17816
2R	8928543	2R_8928543_SNP [dm3] 2R_13041038_SNP [dm6]	T	C	9.885e^-5	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25818024	3R_25818024_SNP [dm3] 3R_29992302_SNP [dm6]	A	G	9.902e^-5	0.834	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14168901	2R_14168901_SNP [dm3] 2R_18281396_SNP [dm6]	A	G	9.940e^-5	0.834	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3790997	3R_3790997_SNP [dm3] 3R_7965275_SNP [dm6]	G	A	1.004e^-4	0.834	INTRON dsx
3R	16934783	3R_16934783_SNP [dm3] 3R_21109061_SNP [dm6]	C	A	1.007e^-4	0.834	INTRON rtet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6137319	X_6137319_SNP [dm3] X_6243286_SNP [dm6]	T	G	1.013e^-4	0.834	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15013603	3R_15013603_SNP [dm3] 3R_19187881_SNP [dm6]	A	G	1.016e^-4	0.834	INTRON CG31475
2R	18594177	2R_18594177_SNP [dm3] 2R_22706672_SNP [dm6]	T	C	1.020e^-4	0.834	UTR_5_PRIME Obp58c UPSTREAM Obp58d	TF binding site mE1_TFBS_inv
2R	16934517	2R_16934517_SNP [dm3] 2R_21047012_SNP [dm6]	G	C	1.023e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8302158	3L_8302158_SNP [dm3] 3L_8309058_SNP [dm6]	C	T	1.025e^-4	0.834	UPSTREAM BI-1 DOWNSTREAM CR45409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
X	14241877	X_14241877_SNP [dm3] X_14347844_SNP [dm6]	T	C	1.025e^-4	0.834	INTRON dpr8
2L	15752653	2L_15752653_SNP [dm3] 2L_15752653_SNP [dm6]	C	T	1.031e^-4	0.834	SYNONYMOUS_CODING l_2_35Df UPSTREAM snRNA:U5:35D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	3942610	X_3942610_SNP [dm3] X_4048577_SNP [dm6]	A	T	1.032e^-4	0.834	EXON CR45482
2R	9715706	2R_9715706_SNP [dm3] 2R_13828201_SNP [dm6]	G	C	1.048e^-4	0.843	INTRON CG6329	TF binding site BDTNP1_TFBS_dl
2R	13888271	2R_13888271_SNP [dm3] 2R_18000766_SNP [dm6]	A	T	1.060e^-4	0.845	INTRON dpr13
2L	6892168	2L_6892168_SNP [dm3] 2L_6892168_SNP [dm6]	T	A	1.066e^-4	0.845	INTRON Nlg2
2R	15142113	2R_15142113_SNP [dm3] 2R_19254608_SNP [dm6]	T	A	1.068e^-4	0.845	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	18534253	3L_18534253_INS [dm3] 3L_18541153_INS [dm6]	C	CC	1.068e^-4	0.845	INTERGENIC
2R	16088739	2R_16088739_SNP [dm3] 2R_20201234_SNP [dm6]	T	C	1.072e^-4	0.845	INTERGENIC
3L	6854944	3L_6854944_SNP [dm3] 3L_6861844_SNP [dm6]	C	T	1.090e^-4	0.856	INTERGENIC
3L	8302071	3L_8302071_SNP [dm3] 3L_8308971_SNP [dm6]	A	G	1.097e^-4	0.857	UPSTREAM BI-1 DOWNSTREAM CR45409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14853748	2R_14853748_SNP [dm3] 2R_18966243_SNP [dm6]	G	A	1.120e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9393181	3L_9393181_SNP [dm3] 3L_9400081_SNP [dm6]	G	T	1.123e^-4	0.862	UPSTREAM CG4080 INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6397856	3L_6397856_SNP [dm3] 3L_6404756_SNP [dm6]	T	G	1.126e^-4	0.862	INTRON CG42747
3L	7632934	3L_7632934_SNP [dm3] 3L_7639834_SNP [dm6]	A	T	1.127e^-4	0.862	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
2L	11182226	2L_11182226_SNP [dm3] 2L_11182226_SNP [dm6]	T	C	1.131e^-4	0.862	INTRON Ca-beta	TF binding site mE1_TFBS_cad
2L	1643406	2L_1643406_SNP [dm3] 2L_1643406_SNP [dm6]	A	T	1.136e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15313938	3L_15313938_SNP [dm3] 3L_15320838_SNP [dm6]	C	A	1.136e^-4	0.862	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Ubx
3R	21016975	3R_21016975_SNP [dm3] 3R_25191253_SNP [dm6]	C	T	1.140e^-4	0.862	SYNONYMOUS_CODING dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15325055	2R_15325055_SNP [dm3] 2R_19437550_SNP [dm6]	T	A	1.154e^-4	0.87	UTR_5_PRIME Spt5 UPSTREAM Fak	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	5781559	2R_5781559_SNP [dm3] 2R_9894054_SNP [dm6]	C	T	1.182e^-4	0.88	NON_SYNONYMOUS_CODING CG30007
2L	8865530	2L_8865530_SNP [dm3] 2L_8865530_SNP [dm6]	G	A	1.184e^-4	0.88	SYNONYMOUS_CODING CG32988 UPSTREAM CG32983 DOWNSTREAM CG32987 EXON CR45260	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6395968	3L_6395968_SNP [dm3] 3L_6402868_SNP [dm6]	A	C	1.187e^-4	0.88	INTRON CG42747
3L	465695	3L_465695_SNP [dm3] 3L_465695_SNP [dm6]	T	C	1.190e^-4	0.88	INTRON klar
3L	13187631	3L_13187631_SNP [dm3] 3L_13194531_SNP [dm6]	G	T	1.194e^-4	0.88	INTERGENIC
X	14453984	X_14453984_SNP [dm3] X_14559951_SNP [dm6]	G	T	1.199e^-4	0.88	INTERGENIC
2L	1952064	2L_1952064_SNP [dm3] 2L_1952064_SNP [dm6]	T	C	1.203e^-4	0.88	SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5666024	2R_5666024_SNP [dm3] 2R_9778519_SNP [dm6]	A	T	1.210e^-4	0.88	INTRON CG1688
2L	7785301	2L_7785301_SNP [dm3] 2L_7785301_SNP [dm6]	C	T	1.213e^-4	0.88	NON_SYNONYMOUS_CODING CG7154 DOWNSTREAM CG7149	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7632930	3L_7632930_SNP [dm3] 3L_7639830_SNP [dm6]	T	A	1.215e^-4	0.88	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
3R	9172181	3R_9172181_SNP [dm3] 3R_13346459_SNP [dm6]	T	C	1.223e^-4	0.881	INTERGENIC
2R	4694511	2R_4694511_SNP [dm3] 2R_8807006_SNP [dm6]	C	T	1.227e^-4	0.881	INTRON sns
2R	4009459	2R_4009459_SNP [dm3] 2R_8121954_SNP [dm6]	A	G	1.243e^-4	0.89	INTRON Asap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	5789290	2R_5789290_SNP [dm3] 2R_9901785_SNP [dm6]	G	T	1.250e^-4	0.892	INTRON CG1441	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6137091	X_6137091_SNP [dm3] X_6243058_SNP [dm6]	G	A	1.259e^-4	0.892	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19172183	2R_19172183_SNP [dm3] 2R_23284660_SNP [dm6]	A	G	1.260e^-4	0.892	SYNONYMOUS_CODING CG13541 UPSTREAM CG3124
3R	15013518	3R_15013518_DEL [dm3] 3R_19187796_DEL [dm6]	TCAGAACAAAT...	T	1.269e^-4	0.895	INTRON CG31475
2R	17492755	2R_17492755_SNP [dm3] 2R_21605250_SNP [dm6]	G	A	1.281e^-4	0.9	UPSTREAM CR45150 DOWNSTREAM CG10433 INTERGENIC
3L	9390740	3L_9390740_SNP [dm3] 3L_9397640_SNP [dm6]	C	T	1.288e^-4	0.901	INTRON CG4080	TF binding site BDTNP1_TFBS_dl
2L	2187807	2L_2187807_SNP [dm3] 2L_2187807_SNP [dm6]	A	G	1.305e^-4	0.907	DOWNSTREAM tRNA:CR31946 & 1 other EXON CR44066	TF binding site mE1_TFBS_chinmo
X	14049111	X_14049111_SNP [dm3] X_14155078_SNP [dm6]	G	C	1.305e^-4	0.907	INTERGENIC
2L	8024567	2L_8024567_SNP [dm3] 2L_8024567_SNP [dm6]	G	A	1.317e^-4	0.911	NON_SYNONYMOUS_CODING Tg
2L	14275507	2L_14275507_SNP [dm3] 2L_14275507_SNP [dm6]	A	G	1.332e^-4	0.913	INTRON wb & 1 other
2R	5308753	2R_5308753_SNP [dm3] 2R_9421248_SNP [dm6]	T	C	1.345e^-4	0.913	DOWNSTREAM CG13955 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	3632614	3L_3632614_SNP [dm3] 3L_3632614_SNP [dm6]	G	A	1.350e^-4	0.913	INTRON dar1	TF binding site BDTNP1_TFBS_dl
3L	15650166	3L_15650166_SNP [dm3] 3L_15657066_SNP [dm6]	G	A	1.351e^-4	0.913	UPSTREAM Eig71Eg INTRON Eig71Ef
2L	991557	2L_991557_SNP [dm3] 2L_991557_SNP [dm6]	C	T	1.353e^-4	0.913	UPSTREAM CR44801 INTERGENIC
2R	14474991	2R_14474991_SNP [dm3] 2R_18587486_SNP [dm6]	A	G	1.354e^-4	0.913	INTRON GEFmeso
2R	20364562	2R_20364562_SNP [dm3] 2R_24477039_SNP [dm6]	G	A	1.357e^-4	0.913	INTRON CG13579
2R	14605054	2R_14605054_SNP [dm3] 2R_18717549_SNP [dm6]	G	A	1.362e^-4	0.913	UPSTREAM Hs3st-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	14865404	2L_14865404_SNP [dm3] 2L_14865404_SNP [dm6]	C	A	1.362e^-4	0.913	INTERGENIC
3L	6396433	3L_6396433_SNP [dm3] 3L_6403333_SNP [dm6]	C	T	1.379e^-4	0.921	INTRON CG42747
2R	20385539	2R_20385539_SNP [dm3] 2R_24498016_SNP [dm6]	C	T	1.391e^-4	0.921	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9988214	3L_9988214_SNP [dm3] 3L_9995114_SNP [dm6]	C	G	1.394e^-4	0.921	INTRON dpr6
2R	13814923	2R_13814923_SNP [dm3] 2R_17927418_SNP [dm6]	G	A	1.395e^-4	0.921	DOWNSTREAM Elk INTERGENIC
3R	15105916	3R_15105916_SNP [dm3] 3R_19280194_SNP [dm6]	A	C	1.406e^-4	0.921	UPSTREAM CR44173 INTERGENIC
2L	7076895	2L_7076895_SNP [dm3] 2L_7076895_SNP [dm6]	T	G	1.407e^-4	0.921	INTRON Pvf2
2L	15752686	2L_15752686_SNP [dm3] 2L_15752686_SNP [dm6]	G	A	1.411e^-4	0.921	SYNONYMOUS_CODING l_2_35Df	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	14279577	2L_14279577_SNP [dm3] 2L_14279577_SNP [dm6]	C	G	1.417e^-4	0.921	INTRON wb
2L	11182291	2L_11182291_SNP [dm3] 2L_11182291_SNP [dm6]	T	A	1.419e^-4	0.921	INTRON Ca-beta
2L	1644392	2L_1644392_SNP [dm3] 2L_1644392_SNP [dm6]	T	G	1.451e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	6138143	2L_6138143_SNP [dm3] 2L_6138143_SNP [dm6]	C	G	1.455e^-4	0.93	DOWNSTREAM CR44824 INTERGENIC
3L	13042287	3L_13042287_SNP [dm3] 3L_13049187_SNP [dm6]	A	T	1.464e^-4	0.93	DOWNSTREAM CG11279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19246030	2R_19246030_SNP [dm3] 2R_23358507_SNP [dm6]	T	A	1.469e^-4	0.93	UTR_3_PRIME CG9875 UPSTREAM CG3500 & 2 others DOWNSTREAM CG9875 EXON CR44168
X	14771184	X_14771184_SNP [dm3] X_14877151_SNP [dm6]	A	C	1.489e^-4	0.93	SYNONYMOUS_CODING CG45065 UTR_3_PRIME CG45064 INTRON Flo2
3R	19233781	3R_19233781_SNP [dm3] 3R_23408059_SNP [dm6]	T	A	1.490e^-4	0.93	DOWNSTREAM Ir94e & 1 other INTERGENIC
3L	11596424	3L_11596424_SNP [dm3] 3L_11603324_SNP [dm6]	G	T	1.492e^-4	0.93	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11182272	2L_11182272_SNP [dm3] 2L_11182272_SNP [dm6]	A	T	1.501e^-4	0.93	INTRON Ca-beta
2R	18638178	2R_18638178_DEL [dm3] 2R_22750673_DEL [dm6]	CAG	C	1.503e^-4	0.93	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	467246	3L_467246_MNP [dm3] 3L_467246_MNP [dm6]	AAG	TTC	1.508e^-4	0.93	INTRON klar
3L	467251	3L_467251_MNP [dm3] 3L_467251_MNP [dm6]	ACT	GTC	1.508e^-4	0.93	INTRON klar
3R	5694025	3R_5694025_SNP [dm3] 3R_9868303_SNP [dm6]	G	A	1.510e^-4	0.93	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_ttk
X	12421890	X_12421890_SNP [dm3] X_12527857_SNP [dm6]	G	T	1.513e^-4	0.93	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
3R	1128701	3R_1128701_INS [dm3] 3R_5302979_INS [dm6]	C	CC	1.515e^-4	0.93	INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12421844	X_12421844_SNP [dm3] X_12527811_SNP [dm6]	A	T	1.516e^-4	0.93	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
2L	2540749	2L_2540749_SNP [dm3] 2L_2540749_SNP [dm6]	A	G	1.525e^-4	0.93	INTERGENIC
2L	15098941	2L_15098941_SNP [dm3] 2L_15098941_SNP [dm6]	A	G	1.527e^-4	0.93	INTERGENIC
2L	11866198	2L_11866198_SNP [dm3] 2L_11866198_SNP [dm6]	A	T	1.539e^-4	0.93	INTRON Pde1c
2R	19135807	2R_19135807_SNP [dm3] 2R_23248284_SNP [dm6]	A	G	1.540e^-4	0.93	UPSTREAM RpL22-like INTERGENIC
2L	1642528	2L_1642528_SNP [dm3] 2L_1642528_SNP [dm6]	A	T	1.549e^-4	0.93	INTERGENIC
2L	15518076	2L_15518076_SNP [dm3] 2L_15518076_SNP [dm6]	A	G	1.551e^-4	0.93	INTERGENIC
3L	15511624	3L_15511624_SNP [dm3] 3L_15518524_SNP [dm6]	C	G	1.555e^-4	0.93	UTR_5_PRIME mex1 UPSTREAM mex1 INTRON mex1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19369027	2L_19369027_SNP [dm3] 2L_19369027_SNP [dm6]	A	T	1.557e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8062489	3L_8062489_SNP [dm3] 3L_8069389_SNP [dm6]	A	T	1.557e^-4	0.93	UPSTREAM CG42590 DOWNSTREAM CG42591 INTRON Ect4
2L	12573808	2L_12573808_SNP [dm3] 2L_12573808_SNP [dm6]	A	G	1.561e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11182218	2L_11182218_SNP [dm3] 2L_11182218_SNP [dm6]	T	C	1.562e^-4	0.93	INTRON Ca-beta	TF binding site mE1_TFBS_cad
X	18515495	X_18515495_SNP [dm3] X_18621462_SNP [dm6]	A	G	1.579e^-4	0.933	UPSTREAM CR43289 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_zfh1
X	14237975	X_14237975_SNP [dm3] X_14343942_SNP [dm6]	T	C	1.580e^-4	0.933	INTRON dpr8
3L	7633012	3L_7633012_SNP [dm3] 3L_7639912_SNP [dm6]	T	A	1.589e^-4	0.933	SYNONYMOUS_CODING CG33276 DOWNSTREAM CG33275 & 2 others
3L	19979350	3L_19979350_SNP [dm3] 3L_19986250_SNP [dm6]	C	G	1.594e^-4	0.933	SYNONYMOUS_CODING schuy UPSTREAM hale
3R	7759921	3R_7759921_SNP [dm3] 3R_11934199_SNP [dm6]	G	A	1.594e^-4	0.933	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6892210	2L_6892210_SNP [dm3] 2L_6892210_SNP [dm6]	A	C	1.597e^-4	0.933	INTRON Nlg2
2R	10270271	2R_10270271_SNP [dm3] 2R_14382766_SNP [dm6]	C	T	1.602e^-4	0.933	SYNONYMOUS_CODING Dh44-R1	TF binding site BDTNP1_TFBS_da
3L	5955109	3L_5955109_DEL [dm3] 3L_5962009_DEL [dm6]	TT	T	1.615e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20379707	2R_20379707_SNP [dm3] 2R_24492184_SNP [dm6]	G	T	1.635e^-4	0.946	DOWNSTREAM CG13589 INTERGENIC
2L	15348540	2L_15348540_SNP [dm3] 2L_15348540_SNP [dm6]	T	C	1.639e^-4	0.946	INTERGENIC
2L	11182260	2L_11182260_SNP [dm3] 2L_11182260_SNP [dm6]	G	C	1.660e^-4	0.947	INTRON Ca-beta
X	14241934	X_14241934_DEL [dm3] X_14347901_DEL [dm6]	CA	T	1.661e^-4	0.947	INTRON dpr8
X	14241938	X_14241938_MNP [dm3] X_14347905_MNP [dm6]	AAAAC	GTTCG	1.661e^-4	0.947	INTRON dpr8
2R	12501293	2R_12501293_SNP [dm3] 2R_16613788_SNP [dm6]	C	A	1.686e^-4	0.947	INTRON CG5065
2L	12188727	2L_12188727_SNP [dm3] 2L_12188727_SNP [dm6]	C	A	1.686e^-4	0.947	INTRON aret
2R	18937606	2R_18937606_SNP [dm3] 2R_23050083_SNP [dm6]	A	T	1.690e^-4	0.947	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16290578	2L_16290578_SNP [dm3] 2L_16290578_SNP [dm6]	T	C	1.697e^-4	0.947	SYNONYMOUS_CODING pkaap UPSTREAM CG17329
3L	4806057	3L_4806057_SNP [dm3] 3L_4806057_SNP [dm6]	T	C	1.698e^-4	0.947	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4806059	3L_4806059_SNP [dm3] 3L_4806059_SNP [dm6]	A	G	1.698e^-4	0.947	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21223474	3R_21223474_SNP [dm3] 3R_25397752_SNP [dm6]	G	T	1.699e^-4	0.947	DOWNSTREAM Muc96D INTRON Fur1
2L	2506250	2L_2506250_SNP [dm3] 2L_2506250_SNP [dm6]	T	A	1.699e^-4	0.947	INTERGENIC
2R	9139434	2R_9139434_SNP [dm3] 2R_13251929_SNP [dm6]	A	C	1.701e^-4	0.947	SYNONYMOUS_CODING CG4714 UPSTREAM CG4712	TF binding site mE1_TFBS_cad
3L	4806053	3L_4806053_SNP [dm3] 3L_4806053_SNP [dm6]	G	T	1.719e^-4	0.95	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	7633550	3L_7633550_SNP [dm3] 3L_7640450_SNP [dm6]	C	T	1.719e^-4	0.95	UPSTREAM CG33276 DOWNSTREAM CG33275 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	10655064	X_10655064_SNP [dm3] X_10761031_SNP [dm6]	C	T	1.742e^-4	0.95	INTRON Tango5
2R	11686446	2R_11686446_SNP [dm3] 2R_15798941_SNP [dm6]	T	C	1.744e^-4	0.95	INTRON Zasp52 & 1 other
2R	4010944	2R_4010944_SNP [dm3] 2R_8123439_SNP [dm6]	G	C	1.746e^-4	0.95	SYNONYMOUS_CODING Nup50 UPSTREAM Asap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7633357	3L_7633357_SNP [dm3] 3L_7640257_SNP [dm6]	T	A	1.751e^-4	0.95	DOWNSTREAM CG33275 & 2 others INTRON CG33276	TF binding site mE1_TFBS_Ubx
X	18058075	X_18058075_SNP [dm3] X_18164042_SNP [dm6]	G	T	1.751e^-4	0.95	INTRON Frq1
2R	4450447	2R_4450447_SNP [dm3] 2R_8562942_SNP [dm6]	G	A	1.759e^-4	0.95	INTERGENIC
2L	12952199	2L_12952199_SNP [dm3] 2L_12952199_SNP [dm6]	T	C	1.763e^-4	0.95	INTERGENIC
2L	6001996	2L_6001996_DEL [dm3] 2L_6001996_DEL [dm6]	TAT	T	1.766e^-4	0.95	UTR_3_PRIME Tsp26A
3L	2593373	3L_2593373_SNP [dm3] 3L_2593373_SNP [dm6]	A	T	1.770e^-4	0.95	INTRON dos	TF binding site mE1_TFBS_cad
3L	8302505	3L_8302505_SNP [dm3] 3L_8309405_SNP [dm6]	A	T	1.771e^-4	0.95	UPSTREAM BI-1 EXON CR45409	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17564553	2R_17564553_SNP [dm3] 2R_21677048_SNP [dm6]	C	A	1.773e^-4	0.95	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19248835	3R_19248835_INS [dm3] 3R_23423113_INS [dm6]	T	TTGCCGAGATTCT...	1.779e^-4	0.951	INTRON CG4374	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4707897	3L_4707897_SNP [dm3] 3L_4707897_SNP [dm6]	A	T	1.800e^-4	0.959	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19940920	3R_19940920_SNP [dm3] 3R_24115198_SNP [dm6]	C	T	1.823e^-4	0.966	SYNONYMOUS_CODING CG13607 INTRON Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18452074	3R_18452074_SNP [dm3] 3R_22626352_SNP [dm6]	G	A	1.830e^-4	0.966	UTR_5_PRIME loco INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	8844420	3L_8844420_SNP [dm3] 3L_8851320_SNP [dm6]	A	G	1.832e^-4	0.966	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	4296666	2L_4296666_SNP [dm3] 2L_4296666_SNP [dm6]	T	C	1.834e^-4	0.966	INTRON tutl
X	12421892	X_12421892_SNP [dm3] X_12527859_SNP [dm6]	A	C	1.842e^-4	0.967	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
3R	5714832	3R_5714832_SNP [dm3] 3R_9889110_SNP [dm6]	G	A	1.849e^-4	0.967	INTRON Glut4EF
2L	3862945	2L_3862945_SNP [dm3] 2L_3862945_SNP [dm6]	T	C	1.854e^-4	0.967	UPSTREAM CR44078 & 1 other INTRON CG3964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_h
2R	5780076	2R_5780076_SNP [dm3] 2R_9892571_SNP [dm6]	A	G	1.859e^-4	0.967	UPSTREAM CG1513 INTRON CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18437366	3L_18437366_SNP [dm3] 3L_18444266_SNP [dm6]	T	G	1.863e^-4	0.967	INTERGENIC
X	3361862	X_3361862_SNP [dm3] X_3467829_SNP [dm6]	G	T	1.865e^-4	0.967	INTRON CR44999 & 1 other
3L	13918638	3L_13918638_SNP [dm3] 3L_13925538_SNP [dm6]	T	G	1.872e^-4	0.967	UPSTREAM Rgl DOWNSTREAM CG8833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9984951	3L_9984951_SNP [dm3] 3L_9991851_SNP [dm6]	A	C	1.895e^-4	0.975	INTRON dpr6
3R	10414691	3R_10414691_SNP [dm3] 3R_14588969_SNP [dm6]	C	T	1.904e^-4	0.975	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16175917	3R_16175917_SNP [dm3] 3R_20350195_SNP [dm6]	A	G	1.906e^-4	0.975	INTERGENIC
X	3522190	X_3522190_SNP [dm3] X_3628157_SNP [dm6]	C	T	1.907e^-4	0.975	INTRON AstA-R1
X	9192710	X_9192710_SNP [dm3] X_9298677_SNP [dm6]	C	T	1.928e^-4	0.976	INTRON lz
2R	14358808	2R_14358808_SNP [dm3] 2R_18471303_SNP [dm6]	G	C	1.932e^-4	0.976	INTRON CG30116
2R	14605321	2R_14605321_SNP [dm3] 2R_18717816_SNP [dm6]	C	T	1.939e^-4	0.976	UPSTREAM Hs3st-A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9192896	3R_9192896_SNP [dm3] 3R_13367174_SNP [dm6]	T	C	1.942e^-4	0.976	UPSTREAM Dic1 & 1 other INTRON Dic1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14241945	X_14241945_SNP [dm3] X_14347912_SNP [dm6]	A	T	1.948e^-4	0.976	INTRON dpr8
3L	741091	3L_741091_DEL [dm3] 3L_741091_DEL [dm6]	GCAAATCG	G	1.948e^-4	0.976	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	14358765	2R_14358765_SNP [dm3] 2R_18471260_SNP [dm6]	T	A	1.952e^-4	0.976	INTRON CG30116
2L	991762	2L_991762_SNP [dm3] 2L_991762_SNP [dm6]	G	A	1.958e^-4	0.976	UPSTREAM CR44801 INTERGENIC
2R	5687824	2R_5687824_SNP [dm3] 2R_9800319_SNP [dm6]	T	C	1.959e^-4	0.976	INTRON CG1688
3L	7544208	3L_7544208_SNP [dm3] 3L_7551108_SNP [dm6]	T	C	1.965e^-4	0.976	INTERGENIC
3L	15650015	3L_15650015_SNP [dm3] 3L_15656915_SNP [dm6]	A	T	1.971e^-4	0.976	UPSTREAM Eig71Ee & 1 other INTRON Eig71Ef
3L	6833923	3L_6833923_SNP [dm3] 3L_6840823_SNP [dm6]	T	C	1.973e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	14224789	2R_14224789_SNP [dm3] 2R_18337284_SNP [dm6]	T	G	1.977e^-4	0.976	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	3691926	3R_3691926_SNP [dm3] 3R_7866204_SNP [dm6]	T	A	1.993e^-4	0.977	INTRON CG17816
2L	1561932	2L_1561932_SNP [dm3] 2L_1561932_SNP [dm6]	C	T	1.994e^-4	0.977	INTRON haf
2R	18246311	2R_18246311_SNP [dm3] 2R_22358806_SNP [dm6]	C	A	1.995e^-4	0.977	INTRON Liprin-gamma
3R	19249034	3R_19249034_SNP [dm3] 3R_23423312_SNP [dm6]	C	T	1.999e^-4	0.977	INTRON CG4374	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	5103338	3R_5103338_SNP [dm3] 3R_9277616_SNP [dm6]	G	A	2.010e^-4	0.979	INTERGENIC
2R	18799095	2R_18799095_SNP [dm3] 2R_22911572_SNP [dm6]	T	C	2.023e^-4	0.983	NON_SYNONYMOUS_CODING nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	11631200	2R_11631200_SNP [dm3] 2R_15743695_SNP [dm6]	G	A	2.036e^-4	0.984	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18246318	2R_18246318_SNP [dm3] 2R_22358813_SNP [dm6]	G	A	2.049e^-4	0.984	INTRON Liprin-gamma
3R	17754783	3R_17754783_SNP [dm3] 3R_21929061_SNP [dm6]	C	G	2.050e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	20213756	3R_20213756_SNP [dm3] 3R_24388034_SNP [dm6]	T	G	2.050e^-4	0.984	INTRON CG5768	TF binding site mE1_TFBS_HSA
3R	23962342	3R_23962342_SNP [dm3] 3R_28136620_SNP [dm6]	G	C	2.059e^-4	0.984	INTERGENIC
2L	12320029	2L_12320029_SNP [dm3] 2L_12320029_SNP [dm6]	A	G	2.062e^-4	0.984	INTERGENIC
2L	7277379	2L_7277379_SNP [dm3] 2L_7277379_SNP [dm6]	C	A	2.064e^-4	0.984	UPSTREAM Wnt4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	1996998	2L_1996998_SNP [dm3] 2L_1996998_SNP [dm6]	G	T	2.067e^-4	0.984	DOWNSTREAM CG33543 INTERGENIC
2L	11934216	2L_11934216_SNP [dm3] 2L_11934216_SNP [dm6]	A	G	2.081e^-4	0.985	UPSTREAM Or33a INTERGENIC
2L	11182523	2L_11182523_SNP [dm3] 2L_11182523_SNP [dm6]	C	T	2.091e^-4	0.985	INTRON Ca-beta
2R	19441720	2R_19441720_SNP [dm3] 2R_23554197_SNP [dm6]	C	T	2.093e^-4	0.985	DOWNSTREAM Dcp-1 & 1 other INTRON pita	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	20368597	2R_20368597_SNP [dm3] 2R_24481074_SNP [dm6]	A	G	2.093e^-4	0.985	INTRON CG13579	TF binding site mE1_TFBS_chinmo
2L	15957908	2L_15957908_SNP [dm3] 2L_15957908_SNP [dm6]	T	A	2.099e^-4	0.985	UTR_5_PRIME CG18063 INTRON beat-Ib
2L	11182507	2L_11182507_SNP [dm3] 2L_11182507_SNP [dm6]	A	C	2.100e^-4	0.985	INTRON Ca-beta
2L	1838341	2L_1838341_SNP [dm3] 2L_1838341_SNP [dm6]	G	C	2.106e^-4	0.985	INTRON wry
3L	6397791	3L_6397791_SNP [dm3] 3L_6404691_SNP [dm6]	T	G	2.146e^-4	0.997	INTRON CG42747
2R	2481675	2R_2481675_SNP [dm3] 2R_6594170_SNP [dm6]	T	A	2.147e^-4	0.997	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	14247752	X_14247752_SNP [dm3] X_14353719_SNP [dm6]	C	T	2.159e^-4	0.997	INTRON dpr8
3R	3819129	3R_3819129_SNP [dm3] 3R_7993407_SNP [dm6]	C	A	2.168e^-4	0.997	INTRON CG2781
3L	16562689	3L_16562689_SNP [dm3] 3L_16569589_SNP [dm6]	C	G	2.176e^-4	0.997	INTRON Mipp1
2L	15751255	2L_15751255_SNP [dm3] 2L_15751255_SNP [dm6]	T	G	2.184e^-4	0.997	UPSTREAM l_2_35Di DOWNSTREAM snRNA:U5:35D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18631020	2R_18631020_SNP [dm3] 2R_22743515_SNP [dm6]	T	G	2.186e^-4	0.997	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17754771	3R_17754771_SNP [dm3] 3R_21929049_SNP [dm6]	G	T	2.186e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	3800122	3R_3800122_DEL [dm3] 3R_7974400_DEL [dm6]	GTT	A	2.189e^-4	0.997	DOWNSTREAM CD98hc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	1206244	2L_1206244_SNP [dm3] 2L_1206244_SNP [dm6]	T	G	2.199e^-4	0.997	DOWNSTREAM CG14342 INTERGENIC
2R	15886460	2R_15886460_SNP [dm3] 2R_19998955_SNP [dm6]	G	T	2.200e^-4	0.997	INTERGENIC
2R	9138987	2R_9138987_DEL [dm3] 2R_13251482_DEL [dm6]	GCTTCGT	G	2.202e^-4	0.997	DOWNSTREAM CG4714
X	1169718	X_1169718_SNP [dm3] X_1275685_SNP [dm6]	A	G	2.219e^-4	0.997	UPSTREAM Atf3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10039147	3L_10039147_INS [dm3] 3L_10046047_INS [dm6]	T	TTT	2.223e^-4	0.997	INTRON dpr6
3L	10154841	3L_10154841_SNP [dm3] 3L_10161741_SNP [dm6]	G	T	2.226e^-4	0.997	INTRON dpr10
2R	18725137	2R_18725137_SNP [dm3] 2R_22837614_SNP [dm6]	A	C	2.228e^-4	0.997	DOWNSTREAM CG12490 INTRON CG9825
2L	5336432	2L_5336432_SNP [dm3] 2L_5336432_SNP [dm6]	G	A	2.229e^-4	0.997	UPSTREAM fusl INTRON fusl
2R	5657509	2R_5657509_SNP [dm3] 2R_9770004_SNP [dm6]	C	G	2.258e^-4	0.997	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15135112	2R_15135112_INS [dm3] 2R_19247607_INS [dm6]	A	ATT	2.259e^-4	0.997	INTERGENIC
2R	15142226	2R_15142226_SNP [dm3] 2R_19254721_SNP [dm6]	A	T	2.261e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17430071	3R_17430071_INS [dm3] 3R_21604349_INS [dm6]	A	AA	2.262e^-4	0.997	INTRON InR	TF binding site BDTNP1_TFBS_dl
2R	15880267	2R_15880267_SNP [dm3] 2R_19992762_SNP [dm6]	C	T	2.265e^-4	0.997	INTERGENIC
X	3825736	X_3825736_SNP [dm3] X_3931703_SNP [dm6]	T	A	2.266e^-4	0.997	DOWNSTREAM CG2938 INTERGENIC
2R	19846322	2R_19846322_SNP [dm3] 2R_23958799_SNP [dm6]	C	T	2.266e^-4	0.997	SYNONYMOUS_CODING alpha-catenin-related	TF binding site mE1_TFBS_chinmo
2R	16232882	2R_16232882_SNP [dm3] 2R_20345377_SNP [dm6]	A	C	2.270e^-4	0.997	SYNONYMOUS_CODING CG13870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13003566	2R_13003566_INS [dm3] 2R_17116061_INS [dm6]	G	GG	2.270e^-4	0.997	INTERGENIC
2L	8141932	2L_8141932_SNP [dm3] 2L_8141932_SNP [dm6]	T	G	2.281e^-4	0.998	UPSTREAM mir-4984 INTRON CG8552
3R	17989301	3R_17989301_SNP [dm3] 3R_22163579_SNP [dm6]	A	T	2.282e^-4	0.998	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	18372626	3R_18372626_SNP [dm3] 3R_22546904_SNP [dm6]	T	C	2.300e^-4	1	SYNONYMOUS_CODING AdipoR UPSTREAM AdipoR	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10552147	3L_10552147_SNP [dm3] 3L_10559047_SNP [dm6]	C	T	2.301e^-4	1	UTR_5_PRIME CG6527 INTRON A2bp1
X	6137389	X_6137389_SNP [dm3] X_6243356_SNP [dm6]	G	A	2.304e^-4	1	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5971526	X_5971526_SNP [dm3] X_6077493_SNP [dm6]	G	T	2.325e^-4	1	UTR_5_PRIME CG4666
2L	2764460	2L_2764460_SNP [dm3] 2L_2764460_SNP [dm6]	C	T	2.327e^-4	1	DOWNSTREAM Trn-SR INTRON CG3077	TF binding site mE1_TFBS_HSA
2L	5809041	2L_5809041_SNP [dm3] 2L_5809041_SNP [dm6]	T	C	2.339e^-4	1	UTR_3_PRIME CG11034 UPSTREAM CR44575 DOWNSTREAM CG11034
3L	586244	3L_586244_SNP [dm3] 3L_586244_SNP [dm6]	G	C	2.345e^-4	1	INTRON Kah
3R	7395080	3R_7395080_SNP [dm3] 3R_11569358_SNP [dm6]	A	G	2.358e^-4	1	UTR_5_PRIME Mrp4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19137441	2R_19137441_INS [dm3] 2R_23249918_INS [dm6]	C	CAC	2.360e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13996704	2R_13996704_SNP [dm3] 2R_18109199_SNP [dm6]	A	T	2.368e^-4	1	UPSTREAM CG5756 & 1 other INTERGENIC
3L	2251301	3L_2251301_SNP [dm3] 3L_2251301_SNP [dm6]	A	C	2.375e^-4	1	NON_SYNONYMOUS_CODING CG32305	TF binding site mE1_TFBS_cad
3L	2609036	3L_2609036_SNP [dm3] 3L_2609036_SNP [dm6]	C	T	2.392e^-4	1	DOWNSTREAM Pxn INTRON Pxn
2L	7431719	2L_7431719_SNP [dm3] 2L_7431719_SNP [dm6]	G	C	2.407e^-4	1	INTRON CG5958
3R	23947781	3R_23947781_SNP [dm3] 3R_28122059_SNP [dm6]	A	C	2.414e^-4	1	INTERGENIC
2L	7067893	2L_7067893_SNP [dm3] 2L_7067893_SNP [dm6]	T	G	2.423e^-4	1	UPSTREAM CG11289 INTERGENIC
2L	15348546	2L_15348546_SNP [dm3] 2L_15348546_SNP [dm6]	C	G	2.429e^-4	1	INTERGENIC
3R	7376928	3R_7376928_SNP [dm3] 3R_11551206_SNP [dm6]	G	T	2.433e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6892162	2L_6892162_SNP [dm3] 2L_6892162_SNP [dm6]	C	G	2.447e^-4	1	INTRON Nlg2
2L	4047994	2L_4047994_SNP [dm3] 2L_4047994_SNP [dm6]	T	A	2.449e^-4	1	INTRON ed	TF binding site mE1_TFBS_chinmo
2L	13349565	2L_13349565_SNP [dm3] 2L_13349565_SNP [dm6]	A	T	2.453e^-4	1	DOWNSTREAM CG9395 & 1 other INTERGENIC
2R	13501831	2R_13501831_DEL [dm3] 2R_17614326_DEL [dm6]	CACGC	C	2.460e^-4	1	INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	10031193	2L_10031193_SNP [dm3] 2L_10031193_SNP [dm6]	C	T	2.462e^-4	1	INTERGENIC
2R	4362600	2R_4362600_SNP [dm3] 2R_8475095_SNP [dm6]	T	C	2.468e^-4	1	UTR_3_PRIME mtt	TF binding site mE1_TFBS_chinmo
2R	19846331	2R_19846331_SNP [dm3] 2R_23958808_SNP [dm6]	A	G	2.477e^-4	1	SYNONYMOUS_CODING alpha-catenin-related	TF binding site mE1_TFBS_chinmo
X	3619075	X_3619075_INS [dm3] X_3725042_INS [dm6]	A	AAGA	2.481e^-4	1	INTRON tlk
2L	11182393	2L_11182393_SNP [dm3] 2L_11182393_SNP [dm6]	T	C	2.485e^-4	1	INTRON Ca-beta
X	15026914	X_15026914_SNP [dm3] X_15132881_SNP [dm6]	G	A	2.494e^-4	1	INTRON drd
2L	1206240	2L_1206240_SNP [dm3] 2L_1206240_SNP [dm6]	T	C	2.497e^-4	1	DOWNSTREAM CG14342 INTERGENIC
X	2225900	X_2225900_SNP [dm3] X_2331867_SNP [dm6]	A	G	2.507e^-4	1	INTRON phl & 1 other
2R	17160209	2R_17160209_SNP [dm3] 2R_21272704_SNP [dm6]	T	C	2.517e^-4	1	INTRON Rgk3
2R	6674037	2R_6674037_SNP [dm3] 2R_10786532_SNP [dm6]	T	C	2.522e^-4	1	UPSTREAM CR44300 & 1 other DOWNSTREAM CR44299 INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1206233	2L_1206233_SNP [dm3] 2L_1206233_SNP [dm6]	T	C	2.525e^-4	1	DOWNSTREAM CG14342 INTERGENIC
2R	5780578	2R_5780578_SNP [dm3] 2R_9893073_SNP [dm6]	T	A	2.525e^-4	1	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
2L	12534984	2L_12534984_SNP [dm3] 2L_12534984_SNP [dm6]	A	C	2.529e^-4	1	INTRON bun
3L	18505180	3L_18505180_SNP [dm3] 3L_18512080_SNP [dm6]	G	A	2.530e^-4	1	INTERGENIC
2L	10213511	2L_10213511_SNP [dm3] 2L_10213511_SNP [dm6]	C	T	2.530e^-4	1	SYNONYMOUS_CODING CG4901 DOWNSTREAM Npc1a
3L	10688178	3L_10688178_SNP [dm3] 3L_10695078_SNP [dm6]	T	C	2.540e^-4	1	SYNONYMOUS_CODING NijA UPSTREAM CG6463
2L	1646823	2L_1646823_INS [dm3] 2L_1646823_INS [dm6]	A	ACATA	2.561e^-4	1	DOWNSTREAM CR45695 INTERGENIC
2R	15396268	2R_15396268_SNP [dm3] 2R_19508763_SNP [dm6]	A	G	2.561e^-4	1	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14606718	2R_14606718_SNP [dm3] 2R_18719213_SNP [dm6]	G	A	2.567e^-4	1	UPSTREAM mir-4982 INTRON Hs3st-A
2R	14172510	2R_14172510_SNP [dm3] 2R_18285005_SNP [dm6]	T	A	2.573e^-4	1	DOWNSTREAM sbb INTRON sbb
3R	3185767	3R_3185767_SNP [dm3] 3R_7360045_SNP [dm6]	A	G	2.575e^-4	1	INTERGENIC
X	14241765	X_14241765_SNP [dm3] X_14347732_SNP [dm6]	T	A	2.576e^-4	1	INTRON dpr8
2R	20378158	2R_20378158_SNP [dm3] 2R_24490635_SNP [dm6]	G	A	2.582e^-4	1	UTR_3_PRIME CG13579
2R	5781437	2R_5781437_SNP [dm3] 2R_9893932_SNP [dm6]	A	C	2.591e^-4	1	INTRON CG30007
2R	3905894	2R_3905894_SNP [dm3] 2R_8018389_SNP [dm6]	A	T	2.604e^-4	1	UPSTREAM CR45267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7633460	3L_7633460_SNP [dm3] 3L_7640360_SNP [dm6]	G	A	2.621e^-4	1	DOWNSTREAM CG33275 & 2 others INTRON CG33276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	19629921	X_19629921_SNP [dm3] X_19735888_SNP [dm6]	G	A	2.624e^-4	1	UTR_5_PRIME CG14234	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20689180	X_20689180_SNP [dm3] X_20818153_SNP [dm6]	T	A	2.628e^-4	1	INTRON shakB
3R	18261475	3R_18261475_SNP [dm3] 3R_22435753_SNP [dm6]	T	A	2.631e^-4	1	START_GAINED CG13847 UTR_5_PRIME CG13847
2R	3310241	2R_3310241_SNP [dm3] 2R_7422736_SNP [dm6]	A	G	2.634e^-4	1	INTRON so EXON CR44202	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	9987767	3L_9987767_SNP [dm3] 3L_9994667_SNP [dm6]	G	A	2.641e^-4	1	INTRON dpr6
2L	2193331	2L_2193331_SNP [dm3] 2L_2193331_SNP [dm6]	C	T	2.649e^-4	1	UPSTREAM CG10874 & 1 other INTRON CG34172	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3R	7759926	3R_7759926_SNP [dm3] 3R_11934204_SNP [dm6]	T	A	2.650e^-4	1	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8891789	X_8891789_SNP [dm3] X_8997756_SNP [dm6]	T	C	2.651e^-4	1	INTRON rdgA & 1 other
2L	9858559	2L_9858559_SNP [dm3] 2L_9858559_SNP [dm6]	G	T	2.659e^-4	1	INTRON nAChRalpha6
2L	7722670	2L_7722670_SNP [dm3] 2L_7722670_SNP [dm6]	A	G	2.665e^-4	1	UTR_5_PRIME CG13794 DOWNSTREAM CG13795
3L	6088695	3L_6088695_SNP [dm3] 3L_6095595_SNP [dm6]	A	T	2.669e^-4	1	UPSTREAM CG10467 INTRON loj
3L	466723	3L_466723_SNP [dm3] 3L_466723_SNP [dm6]	C	T	2.681e^-4	1	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19915893	2L_19915893_INS [dm3] 2L_19915893_INS [dm6]	T	TCTTAACATTTTTGCATTT...	2.692e^-4	1	INTRON sick	TF binding site mE1_TFBS_bab1
2R	14224932	2R_14224932_SNP [dm3] 2R_18337427_SNP [dm6]	G	A	2.700e^-4	1	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	17427940	X_17427940_SNP [dm3] X_17533907_SNP [dm6]	G	C	2.703e^-4	1	NON_SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3678546	2L_3678546_SNP [dm3] 2L_3678546_SNP [dm6]	A	G	2.714e^-4	1	INTRON CG34340
2L	5021860	2L_5021860_SNP [dm3] 2L_5021860_SNP [dm6]	C	T	2.720e^-4	1	INTRON vkg
3L	9418771	3L_9418771_SNP [dm3] 3L_9425671_SNP [dm6]	A	G	2.724e^-4	1	DOWNSTREAM aay INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	10581230	3R_10581230_SNP [dm3] 3R_14755508_SNP [dm6]	A	G	2.726e^-4	1	INTRON jvl
2L	5885976	2L_5885976_SNP [dm3] 2L_5885976_SNP [dm6]	A	T	2.727e^-4	1	UPSTREAM CG9029 DOWNSTREAM CG43185 INTERGENIC	TF binding site mE1_TFBS_cad
2R	16419688	2R_16419688_SNP [dm3] 2R_20532183_SNP [dm6]	C	T	2.734e^-4	1	EXON CR44651	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4707898	3L_4707898_SNP [dm3] 3L_4707898_SNP [dm6]	C	T	2.740e^-4	1	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11924495	2L_11924495_SNP [dm3] 2L_11924495_SNP [dm6]	A	G	2.742e^-4	1	INTRON Pde1c
2L	1206228	2L_1206228_SNP [dm3] 2L_1206228_SNP [dm6]	A	T	2.752e^-4	1	DOWNSTREAM CG14342 INTERGENIC
2R	12046060	2R_12046060_SNP [dm3] 2R_16158555_SNP [dm6]	T	C	2.765e^-4	1	SYNONYMOUS_CODING CG10734 INTRON lbk
2R	13162987	2R_13162987_SNP [dm3] 2R_17275482_SNP [dm6]	T	A	2.766e^-4	1	UTR_5_PRIME mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11866202	2L_11866202_SNP [dm3] 2L_11866202_SNP [dm6]	T	C	2.773e^-4	1	INTRON Pde1c
3R	3791084	3R_3791084_DEL [dm3] 3R_7965362_DEL [dm6]	TTAAAAAGTTGAGTACAGAT...	T	2.773e^-4	1	INTRON dsx
2R	16784100	2R_16784100_SNP [dm3] 2R_20896595_SNP [dm6]	G	A	2.774e^-4	1	SYNONYMOUS_CODING otp START_GAINED otp UTR_5_PRIME otp UPSTREAM CR43160	TF binding site BDTNP1_TFBS_dl
2L	11182448	2L_11182448_SNP [dm3] 2L_11182448_SNP [dm6]	G	A	2.775e^-4	1	INTRON Ca-beta
2L	7784091	2L_7784091_SNP [dm3] 2L_7784091_SNP [dm6]	A	C	2.780e^-4	1	SYNONYMOUS_CODING CG7154	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9364929	2L_9364929_SNP [dm3] 2L_9364929_SNP [dm6]	A	T	2.784e^-4	1	EXON CR43404
2L	5491557	2L_5491557_SNP [dm3] 2L_5491557_SNP [dm6]	A	C	2.785e^-4	1	INTERGENIC
3L	6397816	3L_6397816_SNP [dm3] 3L_6404716_SNP [dm6]	T	A	2.787e^-4	1	INTRON CG42747
3R	10192037	3R_10192037_SNP [dm3] 3R_14366315_SNP [dm6]	G	A	2.789e^-4	1	INTRON NK7.1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	7377176	3R_7377176_DEL [dm3] 3R_11551454_DEL [dm6]	AG	T	2.795e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	4136559	X_4136559_SNP [dm3] X_4242526_SNP [dm6]	A	T	2.797e^-4	1	NON_SYNONYMOUS_CODING Femcoat
2L	13712254	2L_13712254_SNP [dm3] 2L_13712254_SNP [dm6]	A	T	2.810e^-4	1	INTRON CG31814
2L	14865431	2L_14865431_SNP [dm3] 2L_14865431_SNP [dm6]	G	C	2.810e^-4	1	INTERGENIC
2R	5660500	2R_5660500_SNP [dm3] 2R_9772995_SNP [dm6]	A	G	2.819e^-4	1	INTRON CG1688
X	5815054	X_5815054_SNP [dm3] X_5921021_SNP [dm6]	T	A	2.821e^-4	1	INTRON CG3726
3R	25427708	3R_25427708_SNP [dm3] 3R_29601986_SNP [dm6]	G	T	2.821e^-4	1	INTRON alph
2R	10794305	2R_10794305_SNP [dm3] 2R_14906800_SNP [dm6]	T	C	2.821e^-4	1	UPSTREAM CG10249 INTRON CG10249
3R	22885550	3R_22885550_SNP [dm3] 3R_27059828_SNP [dm6]	C	A	2.824e^-4	1	SYNONYMOUS_CODING Nep5
X	14237922	X_14237922_SNP [dm3] X_14343889_SNP [dm6]	A	G	2.825e^-4	1	INTRON dpr8
2R	3932380	2R_3932380_SNP [dm3] 2R_8044875_SNP [dm6]	G	T	2.826e^-4	1	INTERGENIC
2L	8890698	2L_8890698_SNP [dm3] 2L_8890698_SNP [dm6]	C	A	2.835e^-4	1	UPSTREAM CG42713 INTERGENIC
2R	11761543	2R_11761543_SNP [dm3] 2R_15874038_SNP [dm6]	C	A	2.839e^-4	1	INTRON sli	TF binding site BDTNP1_TFBS_sna
X	18055636	X_18055636_SNP [dm3] X_18161603_SNP [dm6]	G	C	2.843e^-4	1	INTRON Frq1
3L	18551056	3L_18551056_SNP [dm3] 3L_18557956_SNP [dm6]	T	C	2.850e^-4	1	INTERGENIC
2R	20359092	2R_20359092_SNP [dm3] 2R_24471569_SNP [dm6]	T	A	2.851e^-4	1	INTRON CG13579
2L	1206245	2L_1206245_SNP [dm3] 2L_1206245_SNP [dm6]	A	T	2.884e^-4	1	DOWNSTREAM CG14342 INTERGENIC
2R	12223477	2R_12223477_SNP [dm3] 2R_16335972_SNP [dm6]	T	C	2.887e^-4	1	UPSTREAM Hmgs INTRON Vha44	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2631492	3L_2631492_SNP [dm3] 3L_2631492_SNP [dm6]	C	T	2.894e^-4	1	UPSTREAM CR45660 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	3386589	2L_3386589_SNP [dm3] 2L_3386589_SNP [dm6]	T	C	2.896e^-4	1	DOWNSTREAM CR45301 & 1 other INTERGENIC
2R	5656825	2R_5656825_SNP [dm3] 2R_9769320_SNP [dm6]	T	C	2.906e^-4	1	SYNONYMOUS_CODING CG1688	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9395701	3L_9395701_SNP [dm3] 3L_9402601_SNP [dm6]	G	A	2.906e^-4	1	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3054181	3L_3054181_SNP [dm3] 3L_3054181_SNP [dm6]	C	T	2.919e^-4	1	SYNONYMOUS_CODING CG1271 UPSTREAM CG16753	TF binding site mE1_TFBS_sens
X	19105661	X_19105661_DEL [dm3] X_19211628_DEL [dm6]	AACCGGAGA	A	2.921e^-4	1	UTR_5_PRIME CG14195 UPSTREAM CG14195
3R	23369756	3R_23369756_SNP [dm3] 3R_27544034_SNP [dm6]	C	T	2.939e^-4	1	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
2L	11780612	2L_11780612_SNP [dm3] 2L_11780612_SNP [dm6]	A	C	2.942e^-4	1	INTERGENIC
2R	17062713	2R_17062713_SNP [dm3] 2R_21175208_SNP [dm6]	A	G	2.943e^-4	1	UPSTREAM Pu DOWNSTREAM Xpd INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	21098772	3R_21098772_SNP [dm3] 3R_25273050_SNP [dm6]	A	C	2.946e^-4	1	NON_SYNONYMOUS_CODING CG11891 UTR_3_PRIME CG11889 UPSTREAM CG11878
2R	19135804	2R_19135804_SNP [dm3] 2R_23248281_SNP [dm6]	C	G	2.966e^-4	1	UPSTREAM RpL22-like INTERGENIC
X	14239790	X_14239790_SNP [dm3] X_14345757_SNP [dm6]	T	C	2.972e^-4	1	INTRON dpr8
3L	467258	3L_467258_SNP [dm3] 3L_467258_SNP [dm6]	A	G	2.975e^-4	1	INTRON klar
2R	3723263	2R_3723263_SNP [dm3] 2R_7835758_SNP [dm6]	G	C	2.981e^-4	1	UTR_3_PRIME Dgk DOWNSTREAM Atg10 & 1 other
3L	7632936	3L_7632936_SNP [dm3] 3L_7639836_SNP [dm6]	G	C	2.984e^-4	1	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
2L	15348547	2L_15348547_SNP [dm3] 2L_15348547_SNP [dm6]	A	T	2.990e^-4	1	INTERGENIC
2R	14605034	2R_14605034_SNP [dm3] 2R_18717529_SNP [dm6]	G	A	2.991e^-4	1	UPSTREAM Hs3st-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	17251357	2R_17251357_SNP [dm3] 2R_21363852_SNP [dm6]	A	T	3.004e^-4	1	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10063153	2L_10063153_SNP [dm3] 2L_10063153_SNP [dm6]	C	T	3.014e^-4	1	SYNONYMOUS_CODING Spn31A DOWNSTREAM CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26537206	3R_26537206_SNP [dm3] 3R_30711484_SNP [dm6]	T	C	3.022e^-4	1	INTERGENIC
2L	16479490	2L_16479490_SNP [dm3] 2L_16479490_SNP [dm6]	T	C	3.023e^-4	1	INTRON dac
3R	15013538	3R_15013538_SNP [dm3] 3R_19187816_SNP [dm6]	G	T	3.025e^-4	1	INTRON CG31475
3L	8302599	3L_8302599_SNP [dm3] 3L_8309499_SNP [dm6]	A	T	3.028e^-4	1	UPSTREAM BI-1 DOWNSTREAM CG7185 EXON CR45409	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8843032	3L_8843032_SNP [dm3] 3L_8849932_SNP [dm6]	C	T	3.031e^-4	1	INTRON dally
3R	15013584	3R_15013584_SNP [dm3] 3R_19187862_SNP [dm6]	A	T	3.049e^-4	1	INTRON CG31475
3R	19233775	3R_19233775_SNP [dm3] 3R_23408053_SNP [dm6]	T	C	3.061e^-4	1	DOWNSTREAM Ir94e & 1 other INTERGENIC
3R	3896009	3R_3896009_SNP [dm3] 3R_8070287_SNP [dm6]	A	G	3.064e^-4	1	INTRON mAChR-B
3L	3154969	3L_3154969_INS [dm3] 3L_3154969_INS [dm6]	G	GG	3.068e^-4	1	UTR_3_PRIME BtbVII DOWNSTREAM BtbVII INTRON BtbVII
X	3361971	X_3361971_SNP [dm3] X_3467938_SNP [dm6]	G	A	3.069e^-4	1	INTRON CR44999 & 1 other
2R	19125117	2R_19125117_SNP [dm3] 2R_23237594_SNP [dm6]	G	C	3.072e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4652709	3L_4652709_SNP [dm3] 3L_4652709_SNP [dm6]	A	T	3.086e^-4	1	INTRON axo
2R	20378216	2R_20378216_SNP [dm3] 2R_24490693_SNP [dm6]	T	C	3.087e^-4	1	DOWNSTREAM CG13579 INTERGENIC
3R	15007726	3R_15007726_SNP [dm3] 3R_19182004_SNP [dm6]	C	A	3.091e^-4	1	INTRON CG31475
3R	18486751	3R_18486751_SNP [dm3] 3R_22661029_SNP [dm6]	G	A	3.095e^-4	1	INTRON CG45058
3R	13969306	3R_13969306_SNP [dm3] 3R_18143584_SNP [dm6]	T	C	3.095e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6428359	3L_6428359_SNP [dm3] 3L_6435259_SNP [dm6]	C	A	3.116e^-4	1	INTRON CG42747	TF binding site mE1_TFBS_cad
X	15148560	X_15148560_SNP [dm3] X_15254527_SNP [dm6]	G	A	3.116e^-4	1	INTERGENIC
3L	9514500	3L_9514500_SNP [dm3] 3L_9521400_SNP [dm6]	G	A	3.125e^-4	1	INTRON CG33700
2R	6301968	2R_6301968_SNP [dm3] 2R_10414463_SNP [dm6]	G	A	3.125e^-4	1	INTRON CG42732
X	4807788	X_4807788_SNP [dm3] X_4913755_SNP [dm6]	G	C	3.130e^-4	1	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20369862	3R_20369862_SNP [dm3] 3R_24544140_SNP [dm6]	C	A	3.131e^-4	1	UPSTREAM CG5789 & 1 other INTERGENIC
2L	9532694	2L_9532694_INS [dm3] 2L_9532694_INS [dm6]	G	GG	3.132e^-4	1	INTRON Oatp30B
3R	7378244	3R_7378244_SNP [dm3] 3R_11552522_SNP [dm6]	T	A	3.136e^-4	1	INTERGENIC
2R	18638177	2R_18638177_SNP [dm3] 2R_22750672_SNP [dm6]	A	G	3.138e^-4	1	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3942510	X_3942510_SNP [dm3] X_4048477_SNP [dm6]	G	A	3.159e^-4	1	EXON CR45482
2R	15572220	2R_15572220_SNP [dm3] 2R_19684715_SNP [dm6]	A	T	3.171e^-4	1	UPSTREAM CR44505 DOWNSTREAM CG15128 INTERGENIC
X	3942573	X_3942573_SNP [dm3] X_4048540_SNP [dm6]	C	A	3.182e^-4	1	EXON CR45482
2R	13663080	2R_13663080_SNP [dm3] 2R_17775575_SNP [dm6]	G	A	3.197e^-4	1	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981
X	18058066	X_18058066_SNP [dm3] X_18164033_SNP [dm6]	G	T	3.206e^-4	1	INTRON Frq1
3L	3780954	3L_3780954_SNP [dm3] 3L_3780954_SNP [dm6]	T	A	3.225e^-4	1	NON_SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12780380	3L_12780380_SNP [dm3] 3L_12787280_SNP [dm6]	T	A	3.228e^-4	1	INTRON Atg1
X	15148446	X_15148446_SNP [dm3] X_15254413_SNP [dm6]	A	T	3.231e^-4	1	INTERGENIC
2L	7075702	2L_7075702_SNP [dm3] 2L_7075702_SNP [dm6]	G	A	3.236e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8176142	X_8176142_SNP [dm3] X_8282109_SNP [dm6]	T	C	3.236e^-4	1	UTR_3_PRIME nAChRalpha3 DOWNSTREAM nAChRalpha3
X	3942607	X_3942607_SNP [dm3] X_4048574_SNP [dm6]	T	A	3.237e^-4	1	EXON CR45482
2L	14211834	2L_14211834_SNP [dm3] 2L_14211834_SNP [dm6]	G	A	3.243e^-4	1	INTRON Dyrk2
2R	7119454	2R_7119454_SNP [dm3] 2R_11231949_SNP [dm6]	T	C	3.246e^-4	1	INTRON metro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	20200330	2R_20200330_SNP [dm3] 2R_24312807_SNP [dm6]	T	C	3.258e^-4	1	UTR_3_PRIME betaTub60D	TF binding site mE1_TFBS_bab1
2L	7030636	2L_7030636_DEL [dm3] 2L_7030636_DEL [dm6]	GTAAAAATATG...	G	3.261e^-4	1	UTR_3_PRIME Rab30 DOWNSTREAM Rab30
3R	1148366	3R_1148366_DEL [dm3] 3R_5322644_DEL [dm6]	AGCTGAGGAATATAATAAAC...	A	3.266e^-4	1	INTRON mtd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	16751460	X_16751460_SNP [dm3] X_16857427_SNP [dm6]	T	C	3.276e^-4	1	INTRON CG13003
2L	3123445	2L_3123445_SNP [dm3] 2L_3123445_SNP [dm6]	T	G	3.281e^-4	1	INTRON toc
2R	19185488	2R_19185488_SNP [dm3] 2R_23297965_SNP [dm6]	T	C	3.299e^-4	1	INTERGENIC
3R	6460623	3R_6460623_SNP [dm3] 3R_10634901_SNP [dm6]	A	G	3.299e^-4	1	INTRON hth	TF binding site mE1_TFBS_chinmo
2L	1213300	2L_1213300_DEL [dm3] 2L_1213300_DEL [dm6]	CC	C	3.305e^-4	1	INTERGENIC
3L	3663874	3L_3663874_SNP [dm3] 3L_3663874_SNP [dm6]	G	A	3.310e^-4	1	INTERGENIC
2L	5187953	2L_5187953_SNP [dm3] 2L_5187953_SNP [dm6]	A	T	3.319e^-4	1	DOWNSTREAM snoRNA:Psi28S-2263 INTRON Msp300
2L	7022199	2L_7022199_SNP [dm3] 2L_7022199_SNP [dm6]	T	C	3.322e^-4	1	SYNONYMOUS_CODING Pcp INTRON ade3
2R	20362715	2R_20362715_SNP [dm3] 2R_24475192_SNP [dm6]	A	G	3.323e^-4	1	UTR_3_PRIME CG3494 UPSTREAM CG16837 DOWNSTREAM CG3492 INTRON CG13579
3L	10156662	3L_10156662_SNP [dm3] 3L_10163562_SNP [dm6]	C	T	3.337e^-4	1	INTRON dpr10
X	2345677	X_2345677_SNP [dm3] X_2451644_SNP [dm6]	G	T	3.340e^-4	1	SYNONYMOUS_CODING boi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5409004	2L_5409004_SNP [dm3] 2L_5409004_SNP [dm6]	G	T	3.342e^-4	1	INTRON H15
3L	9515744	3L_9515744_SNP [dm3] 3L_9522644_SNP [dm6]	A	T	3.344e^-4	1	INTRON CG33700
X	997741	X_997741_SNP [dm3] X_1103708_SNP [dm6]	C	T	3.344e^-4	1	INTRON CG3655
3L	4810297	3L_4810297_SNP [dm3] 3L_4810297_SNP [dm6]	G	C	3.346e^-4	1	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14291085	3R_14291085_SNP [dm3] 3R_18465363_SNP [dm6]	C	T	3.356e^-4	1	INTRON fru
3L	16689633	3L_16689633_INS [dm3] 3L_16696533_INS [dm6]	T	TT	3.357e^-4	1	INTRON CR45179 & 2 others
2R	8931214	2R_8931214_SNP [dm3] 2R_13043709_SNP [dm6]	A	G	3.360e^-4	1	DOWNSTREAM CG13323 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	15281431	2L_15281431_SNP [dm3] 2L_15281431_SNP [dm6]	C	T	3.363e^-4	1	DOWNSTREAM CR45349 INTERGENIC
3R	7394029	3R_7394029_SNP [dm3] 3R_11568307_SNP [dm6]	G	A	3.370e^-4	1	UPSTREAM Mrp4 INTERGENIC
3R	19778210	3R_19778210_SNP [dm3] 3R_23952488_SNP [dm6]	G	A	3.372e^-4	1	SYNONYMOUS_CODING Aats-glupro	TF binding site mE1_TFBS_cad
3R	20839499	3R_20839499_SNP [dm3] 3R_25013777_SNP [dm6]	C	G	3.377e^-4	1	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20361643	2R_20361643_SNP [dm3] 2R_24474120_SNP [dm6]	C	A	3.380e^-4	1	UTR_3_PRIME CG3492 UPSTREAM CG3494 INTRON CG13579	TF binding site mE1_TFBS_HSA
2R	13385244	2R_13385244_DEL [dm3] 2R_17497739_DEL [dm6]	TACAGATA	T	3.384e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	4362560	2R_4362560_SNP [dm3] 2R_8475055_SNP [dm6]	C	T	3.384e^-4	1	UTR_3_PRIME mtt	TF binding site mE1_TFBS_chinmo
2L	8310038	2L_8310038_SNP [dm3] 2L_8310038_SNP [dm6]	A	C	3.398e^-4	1	NON_SYNONYMOUS_CODING CG7810 DOWNSTREAM CG7818	TF binding site mE1_TFBS_sens
3R	7376439	3R_7376439_INS [dm3] 3R_11550717_INS [dm6]	A	AACAAGCACAA...	3.400e^-4	1	INTERGENIC
3L	9970170	3L_9970170_SNP [dm3] 3L_9977070_SNP [dm6]	T	A	3.407e^-4	1	INTRON dpr6
3L	12660251	3L_12660251_SNP [dm3] 3L_12667151_SNP [dm6]	G	T	3.410e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8455806	3L_8455806_SNP [dm3] 3L_8462706_SNP [dm6]	A	T	3.414e^-4	1	INTRON Gug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19079845	2R_19079845_SNP [dm3] 2R_23192322_SNP [dm6]	G	T	3.415e^-4	1	INTRON CG34371	TF binding site mE1_TFBS_cad
3L	14018389	3L_14018389_SNP [dm3] 3L_14025289_SNP [dm6]	C	T	3.417e^-4	1	SYNONYMOUS_CODING ptip
3R	5945324	3R_5945324_SNP [dm3] 3R_10119602_SNP [dm6]	T	C	3.418e^-4	1	UTR_3_PRIME CG3940 DOWNSTREAM gammaSnap2 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11780645	2L_11780645_SNP [dm3] 2L_11780645_SNP [dm6]	T	A	3.419e^-4	1	INTERGENIC
3L	16529068	3L_16529068_SNP [dm3] 3L_16535968_SNP [dm6]	G	C	3.425e^-4	1	INTRON CG43373	TF binding site BDTNP1_TFBS_twi
3R	3902698	3R_3902698_SNP [dm3] 3R_8076976_SNP [dm6]	T	A	3.453e^-4	1	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4009198	2R_4009198_SNP [dm3] 2R_8121693_SNP [dm6]	G	A	3.460e^-4	1	INTRON Asap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	20462601	2L_20462601_SNP [dm3] 2L_20462601_SNP [dm6]	T	G	3.461e^-4	1	NON_SYNONYMOUS_CODING CG2493 DOWNSTREAM Cdc23	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20462630	2L_20462630_SNP [dm3] 2L_20462630_SNP [dm6]	A	G	3.461e^-4	1	SYNONYMOUS_CODING CG2493 DOWNSTREAM Cdc23	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6552625	3R_6552625_INS [dm3] 3R_10726903_INS [dm6]	A	AA	3.463e^-4	1	INTERGENIC
3R	26774081	3R_26774081_SNP [dm3] 3R_30948359_SNP [dm6]	A	G	3.466e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8302290	3L_8302290_SNP [dm3] 3L_8309190_SNP [dm6]	A	G	3.467e^-4	1	UPSTREAM BI-1 DOWNSTREAM CR45409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	7379740	3R_7379740_SNP [dm3] 3R_11554018_SNP [dm6]	T	A	3.496e^-4	1	UPSTREAM CG14708 INTERGENIC
2L	11484404	2L_11484404_SNP [dm3] 2L_11484404_SNP [dm6]	G	C	3.507e^-4	1	UPSTREAM CG43355 & 1 other INTERGENIC
2L	12188289	2L_12188289_SNP [dm3] 2L_12188289_SNP [dm6]	A	G	3.516e^-4	1	INTRON aret
3L	3417246	3L_3417246_SNP [dm3] 3L_3417246_SNP [dm6]	T	G	3.526e^-4	1	UTR_5_PRIME sty INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	6096128	3L_6096128_SNP [dm3] 3L_6103028_SNP [dm6]	T	A	3.532e^-4	1	INTRON Ets65A
3L	6096134	3L_6096134_SNP [dm3] 3L_6103034_SNP [dm6]	T	G	3.532e^-4	1	INTRON Ets65A
2L	10788197	2L_10788197_SNP [dm3] 2L_10788197_SNP [dm6]	C	T	3.533e^-4	1	INTRON CG31869
2R	6660111	2R_6660111_SNP [dm3] 2R_10772606_SNP [dm6]	C	T	3.534e^-4	1	INTRON CG33144
3L	18565331	3L_18565331_SNP [dm3] 3L_18572231_SNP [dm6]	G	A	3.541e^-4	1	INTRON AstC-R1
X	3897800	X_3897800_SNP [dm3] X_4003767_SNP [dm6]	G	A	3.550e^-4	1	INTERGENIC
3R	9655454	3R_9655454_INS [dm3] 3R_13829732_INS [dm6]	T	TGAATGA	3.569e^-4	1	INTERGENIC
3R	9655461	3R_9655461_SNP [dm3] 3R_13829739_SNP [dm6]	C	T	3.569e^-4	1	INTERGENIC
2L	9904353	2L_9904353_SNP [dm3] 2L_9904353_SNP [dm6]	G	T	3.570e^-4	1	SYNONYMOUS_CODING CG13124	TF binding site mE1_TFBS_cad
2L	696931	2L_696931_SNP [dm3] 2L_696931_SNP [dm6]	C	G	3.571e^-4	1	INTRON ds
X	7739255	X_7739255_SNP [dm3] X_7845222_SNP [dm6]	G	T	3.573e^-4	1	INTERGENIC
2R	18246030	2R_18246030_SNP [dm3] 2R_22358525_SNP [dm6]	C	A	3.578e^-4	1	INTRON Liprin-gamma
2L	12471144	2L_12471144_SNP [dm3] 2L_12471144_SNP [dm6]	G	A	3.584e^-4	1	INTRON bun
2R	12501248	2R_12501248_SNP [dm3] 2R_16613743_SNP [dm6]	T	C	3.584e^-4	1	INTRON CG5065
3L	7840502	3L_7840502_SNP [dm3] 3L_7847402_SNP [dm6]	G	A	3.587e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	11474698	3L_11474698_SNP [dm3] 3L_11481598_SNP [dm6]	G	C	3.587e^-4	1	INTERGENIC
3R	19230759	3R_19230759_SNP [dm3] 3R_23405037_SNP [dm6]	G	T	3.602e^-4	1	SYNONYMOUS_CODING Ir94d UPSTREAM Ir94e
X	17654508	X_17654508_SNP [dm3] X_17760475_SNP [dm6]	G	T	3.614e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6192031	2R_6192031_SNP [dm3] 2R_10304526_SNP [dm6]	A	C	3.616e^-4	1	UTR_5_PRIME CAP INTRON CAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11182436	2L_11182436_SNP [dm3] 2L_11182436_SNP [dm6]	T	G	3.619e^-4	1	INTRON Ca-beta
3L	10703665	3L_10703665_DEL [dm3] 3L_10710565_DEL [dm6]	GACTTAATTTTG...	G	3.626e^-4	1	INTERGENIC
2R	13814927	2R_13814927_SNP [dm3] 2R_17927422_SNP [dm6]	C	G	3.629e^-4	1	DOWNSTREAM Elk INTERGENIC
2R	5666895	2R_5666895_SNP [dm3] 2R_9779390_SNP [dm6]	A	G	3.643e^-4	1	SYNONYMOUS_CODING CG1688	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5739871	2R_5739871_SNP [dm3] 2R_9852366_SNP [dm6]	A	G	3.681e^-4	1	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9637150	3R_9637150_SNP [dm3] 3R_13811428_SNP [dm6]	G	A	3.687e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16581485	3L_16581485_SNP [dm3] 3L_16588385_SNP [dm6]	G	A	3.699e^-4	1	UPSTREAM l_3_73Ah DOWNSTREAM CG32163 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	5779845	2R_5779845_SNP [dm3] 2R_9892340_SNP [dm6]	A	T	3.699e^-4	1	NON_SYNONYMOUS_CODING CG30007 UPSTREAM CG1513	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4807838	X_4807838_SNP [dm3] X_4913805_SNP [dm6]	A	T	3.711e^-4	1	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21018331	2L_21018331_INS [dm3] 2L_21018331_INS [dm6]	T	TCGGGAT	3.711e^-4	1	INTRON CG42238
3R	19940953	3R_19940953_SNP [dm3] 3R_24115231_SNP [dm6]	T	C	3.719e^-4	1	SYNONYMOUS_CODING CG13607 INTRON Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13042227	3L_13042227_SNP [dm3] 3L_13049127_SNP [dm6]	C	A	3.721e^-4	1	DOWNSTREAM CG11279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20369872	3R_20369872_SNP [dm3] 3R_24544150_SNP [dm6]	T	A	3.726e^-4	1	UPSTREAM CG5789 & 1 other INTERGENIC
3R	25913423	3R_25913423_SNP [dm3] 3R_30087701_SNP [dm6]	A	G	3.745e^-4	1	INTRON sima
2L	14084037	2L_14084037_INS [dm3] 2L_14084037_INS [dm6]	A	AA	3.755e^-4	1	INTRON nAChRalpha5
2L	3260776	2L_3260776_SNP [dm3] 2L_3260776_SNP [dm6]	G	A	3.764e^-4	1	DOWNSTREAM CR45337 & 1 other INTERGENIC
2L	11198670	2L_11198670_SNP [dm3] 2L_11198670_SNP [dm6]	G	T	3.818e^-4	1	INTRON Ca-beta
3L	7604021	3L_7604021_SNP [dm3] 3L_7610921_SNP [dm6]	A	T	3.820e^-4	1	INTRON CG33275	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2093653	X_2093653_SNP [dm3] X_2199620_SNP [dm6]	A	G	3.821e^-4	1	INTRON Mct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15148433	X_15148433_SNP [dm3] X_15254400_SNP [dm6]	C	G	3.845e^-4	1	INTERGENIC
3L	17135117	3L_17135117_SNP [dm3] 3L_17142017_SNP [dm6]	G	A	3.856e^-4	1	INTRON Rbp6
2L	9366782	2L_9366782_SNP [dm3] 2L_9366782_SNP [dm6]	C	T	3.862e^-4	1	UPSTREAM CG34181 INTERGENIC
3R	9655444	3R_9655444_INS [dm3] 3R_13829722_INS [dm6]	G	GAT	3.865e^-4	1	INTERGENIC
3R	9655447	3R_9655447_DEL [dm3] 3R_13829725_DEL [dm6]	GCTCGT	G	3.865e^-4	1	INTERGENIC
3L	9282180	3L_9282180_DEL [dm3] 3L_9289080_DEL [dm6]	AA	A	3.870e^-4	1	DOWNSTREAM GluRIB INTERGENIC
2L	2205538	2L_2205538_SNP [dm3] 2L_2205538_SNP [dm6]	C	G	3.899e^-4	1	SYNONYMOUS_CODING CG31668 DOWNSTREAM CG33124
3L	6428331	3L_6428331_SNP [dm3] 3L_6435231_SNP [dm6]	T	G	3.903e^-4	1	INTRON CG42747	TF binding site mE1_TFBS_cad
3L	3781045	3L_3781045_SNP [dm3] 3L_3781045_SNP [dm6]	C	A	3.904e^-4	1	SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3779233	3L_3779233_SNP [dm3] 3L_3779233_SNP [dm6]	T	C	3.906e^-4	1	INTRON CG32264
2L	11182274	2L_11182274_SNP [dm3] 2L_11182274_SNP [dm6]	T	A	3.908e^-4	1	INTRON Ca-beta
3L	9970140	3L_9970140_SNP [dm3] 3L_9977040_SNP [dm6]	C	T	3.911e^-4	1	INTRON dpr6
3R	17277861	3R_17277861_SNP [dm3] 3R_21452139_SNP [dm6]	T	C	3.912e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14865437	2L_14865437_SNP [dm3] 2L_14865437_SNP [dm6]	C	A	3.913e^-4	1	INTERGENIC
2L	10789742	2L_10789742_SNP [dm3] 2L_10789742_SNP [dm6]	G	C	3.914e^-4	1	UPSTREAM CG31870 INTRON CG31869
2R	14605110	2R_14605110_SNP [dm3] 2R_18717605_SNP [dm6]	T	C	3.919e^-4	1	UPSTREAM Hs3st-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	16175939	3R_16175939_SNP [dm3] 3R_20350217_SNP [dm6]	A	C	3.926e^-4	1	INTERGENIC
3L	466832	3L_466832_SNP [dm3] 3L_466832_SNP [dm6]	T	C	3.944e^-4	1	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15105399	2L_15105399_SNP [dm3] 2L_15105399_SNP [dm6]	T	A	3.946e^-4	1	INTERGENIC
3L	10882600	3L_10882600_SNP [dm3] 3L_10889500_SNP [dm6]	G	T	3.947e^-4	1	UPSTREAM Cpr67Fa1 INTERGENIC
2L	1503746	2L_1503746_SNP [dm3] 2L_1503746_SNP [dm6]	G	A	3.956e^-4	1	UPSTREAM CG7420 EXON CR44064	TF binding site BDTNP1_TFBS_dl
2L	10796842	2L_10796842_SNP [dm3] 2L_10796842_SNP [dm6]	G	A	3.961e^-4	1	INTRON CG31869
2R	7953945	2R_7953945_SNP [dm3] 2R_12066440_SNP [dm6]	A	G	3.965e^-4	1	INTRON CG8888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2L	8563327	2L_8563327_SNP [dm3] 2L_8563327_SNP [dm6]	T	A	3.970e^-4	1	INTRON Sema-1a
3L	6577908	3L_6577908_SNP [dm3] 3L_6584808_SNP [dm6]	T	C	3.971e^-4	1	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_inv
3L	9396676	3L_9396676_SNP [dm3] 3L_9403576_SNP [dm6]	G	A	3.976e^-4	1	INTERGENIC
2R	5656770	2R_5656770_SNP [dm3] 2R_9769265_SNP [dm6]	C	G	3.980e^-4	1	NON_SYNONYMOUS_CODING CG1688	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9393298	3L_9393298_SNP [dm3] 3L_9400198_SNP [dm6]	C	A	3.992e^-4	1	UPSTREAM CG4080 INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	7354741	X_7354741_SNP [dm3] X_7460708_SNP [dm6]	A	T	4.003e^-4	1	EXON CR44500
3L	7634999	3L_7634999_MNP [dm3] 3L_7641899_MNP [dm6]	AAG	CTT	4.008e^-4	1	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3R	3791648	3R_3791648_SNP [dm3] 3R_7965926_SNP [dm6]	G	A	4.008e^-4	1	INTRON dsx
2L	15348550	2L_15348550_SNP [dm3] 2L_15348550_SNP [dm6]	T	A	4.010e^-4	1	INTERGENIC
2L	14436439	2L_14436439_SNP [dm3] 2L_14436439_SNP [dm6]	T	C	4.016e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	9970087	3L_9970087_INS [dm3] 3L_9976987_INS [dm6]	A	ATT	4.018e^-4	1	INTRON dpr6
2L	17308530	2L_17308530_SNP [dm3] 2L_17308530_SNP [dm6]	G	C	4.023e^-4	1	INTERGENIC
3L	9970169	3L_9970169_SNP [dm3] 3L_9977069_SNP [dm6]	A	G	4.025e^-4	1	INTRON dpr6
2L	15344102	2L_15344102_SNP [dm3] 2L_15344102_SNP [dm6]	T	C	4.041e^-4	1	INTERGENIC
2R	16514059	2R_16514059_SNP [dm3] 2R_20626554_SNP [dm6]	C	T	4.042e^-4	1	SYNONYMOUS_CODING CG16742
2R	8854994	2R_8854994_SNP [dm3] 2R_12967489_SNP [dm6]	G	C	4.044e^-4	1	NON_SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16563708	3L_16563708_SNP [dm3] 3L_16570608_SNP [dm6]	A	G	4.066e^-4	1	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8851618	2L_8851618_SNP [dm3] 2L_8851618_SNP [dm6]	C	T	4.073e^-4	1	DOWNSTREAM CR45365 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	7432008	2L_7432008_SNP [dm3] 2L_7432008_SNP [dm6]	C	T	4.085e^-4	1	INTRON CG5958
X	18055645	X_18055645_SNP [dm3] X_18161612_SNP [dm6]	T	G	4.093e^-4	1	INTRON Frq1
2L	11182179	2L_11182179_SNP [dm3] 2L_11182179_SNP [dm6]	A	C	4.095e^-4	1	INTRON Ca-beta	TF binding site mE1_TFBS_cad
2R	5820066	2R_5820066_SNP [dm3] 2R_9932561_SNP [dm6]	C	G	4.100e^-4	1	INTRON Mef2	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20359576	3R_20359576_SNP [dm3] 3R_24533854_SNP [dm6]	G	A	4.106e^-4	1	SYNONYMOUS_CODING ana1	TF binding site mE1_TFBS_cad
3L	18545495	3L_18545495_SNP [dm3] 3L_18552395_SNP [dm6]	A	T	4.119e^-4	1	INTERGENIC
3L	18560100	3L_18560100_SNP [dm3] 3L_18567000_SNP [dm6]	A	G	4.123e^-4	1	INTRON AstC-R1
X	17159523	X_17159523_INS [dm3] X_17265490_INS [dm6]	A	AGCA	4.131e^-4	1	UTR_5_PRIME f INTRON f	TF binding site BDTNP1_TFBS_dl
X	10346003	X_10346003_SNP [dm3] X_10451970_SNP [dm6]	T	C	4.139e^-4	1	INTRON CG32683
2L	9621702	2L_9621702_SNP [dm3] 2L_9621702_SNP [dm6]	T	A	4.140e^-4	1	SYNONYMOUS_CODING GlcAT-S
2R	6708622	2R_6708622_SNP [dm3] 2R_10821117_SNP [dm6]	C	G	4.146e^-4	1	UTR_3_PRIME Prosbeta5 & 1 other UPSTREAM RpS15Ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1206223	2L_1206223_SNP [dm3] 2L_1206223_SNP [dm6]	G	A	4.148e^-4	1	DOWNSTREAM CG14342 INTERGENIC
3L	9395698	3L_9395698_SNP [dm3] 3L_9402598_SNP [dm6]	T	G	4.148e^-4	1	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6701246	3L_6701246_SNP [dm3] 3L_6708146_SNP [dm6]	T	C	4.156e^-4	1	INTRON CG8519
2R	19245997	2R_19245997_SNP [dm3] 2R_23358474_SNP [dm6]	T	A	4.158e^-4	1	UTR_3_PRIME CG9875 UPSTREAM CG3500 & 2 others DOWNSTREAM CR44168 & 1 other
3L	11851973	3L_11851973_SNP [dm3] 3L_11858873_SNP [dm6]	G	A	4.181e^-4	1	INTRON CG44837
2L	8506342	2L_8506342_SNP [dm3] 2L_8506342_SNP [dm6]	A	G	4.188e^-4	1	INTRON Dh31
3R	25026741	3R_25026741_SNP [dm3] 3R_29201019_SNP [dm6]	T	C	4.189e^-4	1	SYNONYMOUS_CODING CG11899 DOWNSTREAM Mesh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9801366	3L_9801366_SNP [dm3] 3L_9808266_SNP [dm6]	T	C	4.200e^-4	1	UTR_3_PRIME CG32052	TF binding site BDTNP1_TFBS_twi
3R	7378441	3R_7378441_SNP [dm3] 3R_11552719_SNP [dm6]	C	A	4.205e^-4	1	INTERGENIC
X	5605639	X_5605639_SNP [dm3] X_5711606_SNP [dm6]	G	A	4.227e^-4	1	INTRON CG33080	TF binding site mE1_TFBS_ftz_f1
X	12630923	X_12630923_DEL [dm3] X_12736890_DEL [dm6]	ACATA	A	4.233e^-4	1	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl mE1_TFBS_zfh1
3R	17234159	3R_17234159_SNP [dm3] 3R_21408437_SNP [dm6]	T	C	4.233e^-4	1	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	5785120	2R_5785120_SNP [dm3] 2R_9897615_SNP [dm6]	C	T	4.234e^-4	1	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6234591	2L_6234591_SNP [dm3] 2L_6234591_SNP [dm6]	T	G	4.239e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	8506313	2L_8506313_SNP [dm3] 2L_8506313_SNP [dm6]	A	T	4.262e^-4	1	INTRON Dh31
2R	5654081	2R_5654081_SNP [dm3] 2R_9766576_SNP [dm6]	C	T	4.272e^-4	1	NON_SYNONYMOUS_CODING CG1688 EXON CR44205	TF binding site mE1_TFBS_cad
3R	15627108	3R_15627108_SNP [dm3] 3R_19801386_SNP [dm6]	A	T	4.274e^-4	1	INTRON bnl	TF binding site mE1_TFBS_inv
2R	5822433	2R_5822433_SNP [dm3] 2R_9934928_SNP [dm6]	A	T	4.281e^-4	1	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26734735	3R_26734735_SNP [dm3] 3R_30909013_SNP [dm6]	C	T	4.285e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8844413	3L_8844413_SNP [dm3] 3L_8851313_SNP [dm6]	C	T	4.293e^-4	1	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	15882644	2R_15882644_SNP [dm3] 2R_19995139_SNP [dm6]	G	A	4.300e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12501292	2R_12501292_SNP [dm3] 2R_16613787_SNP [dm6]	C	A	4.301e^-4	1	INTRON CG5065
2R	9735439	2R_9735439_SNP [dm3] 2R_13847934_SNP [dm6]	A	G	4.301e^-4	1	NON_SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3813469	3R_3813469_SNP [dm3] 3R_7987747_SNP [dm6]	T	C	4.305e^-4	1	INTRON CG2781
2R	8936014	2R_8936014_SNP [dm3] 2R_13048509_SNP [dm6]	C	T	4.306e^-4	1	DOWNSTREAM CG13324 INTERGENIC
2R	15329397	2R_15329397_SNP [dm3] 2R_19441892_SNP [dm6]	G	A	4.308e^-4	1	UTR_3_PRIME Spt5 UPSTREAM RpL11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	4804280	X_4804280_SNP [dm3] X_4910247_SNP [dm6]	T	A	4.310e^-4	1	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18611627	3L_18611627_SNP [dm3] 3L_18618527_SNP [dm6]	T	G	4.313e^-4	1	UTR_3_PRIME not UPSTREAM CG13380 & 1 other DOWNSTREAM not & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	23318856	3R_23318856_SNP [dm3] 3R_27493134_SNP [dm6]	C	G	4.319e^-4	1	INTERGENIC
2L	9825805	2L_9825805_SNP [dm3] 2L_9825805_SNP [dm6]	G	A	4.324e^-4	1	INTRON nAChRalpha6
3R	17234181	3R_17234181_SNP [dm3] 3R_21408459_SNP [dm6]	A	T	4.335e^-4	1	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	12421908	X_12421908_SNP [dm3] X_12527875_SNP [dm6]	A	G	4.336e^-4	1	INTRON CG43921
2R	13640370	2R_13640370_SNP [dm3] 2R_17752865_SNP [dm6]	T	C	4.339e^-4	1	SYNONYMOUS_CODING CG5002 DOWNSTREAM CG6385	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16564225	3L_16564225_SNP [dm3] 3L_16571125_SNP [dm6]	T	C	4.347e^-4	1	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11198368	2L_11198368_SNP [dm3] 2L_11198368_SNP [dm6]	A	T	4.349e^-4	1	INTRON Ca-beta
X	5477780	X_5477780_SNP [dm3] X_5583747_SNP [dm6]	A	G	4.349e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	5944037	3R_5944037_SNP [dm3] 3R_10118315_SNP [dm6]	C	T	4.351e^-4	1	SYNONYMOUS_CODING CG3940
2L	11484390	2L_11484390_SNP [dm3] 2L_11484390_SNP [dm6]	T	A	4.355e^-4	1	UPSTREAM CG43355 & 1 other INTERGENIC
3R	5103314	3R_5103314_SNP [dm3] 3R_9277592_SNP [dm6]	T	G	4.359e^-4	1	INTERGENIC
3R	16293867	3R_16293867_SNP [dm3] 3R_20468145_SNP [dm6]	C	T	4.369e^-4	1	INTRON Gfrl
2R	4657139	2R_4657139_SNP [dm3] 2R_8769634_SNP [dm6]	T	G	4.376e^-4	1	UPSTREAM CR44278 INTERGENIC
3L	6396597	3L_6396597_SNP [dm3] 3L_6403497_SNP [dm6]	G	T	4.386e^-4	1	INTRON CG42747
2R	9137940	2R_9137940_SNP [dm3] 2R_13250435_SNP [dm6]	T	C	4.387e^-4	1	SYNONYMOUS_CODING CG4712
2L	12404315	2L_12404315_SNP [dm3] 2L_12404315_SNP [dm6]	A	C	4.393e^-4	1	INTRON vir-1
2R	8443006	2R_8443006_SNP [dm3] 2R_12555501_SNP [dm6]	T	C	4.400e^-4	1	INTRON fra
2L	1913969	2L_1913969_SNP [dm3] 2L_1913969_SNP [dm6]	C	G	4.401e^-4	1	INTRON CG7337
2R	20385509	2R_20385509_SNP [dm3] 2R_24497986_SNP [dm6]	A	G	4.403e^-4	1	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13969302	3R_13969302_SNP [dm3] 3R_18143580_SNP [dm6]	T	A	4.405e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15341479	X_15341479_SNP [dm3] X_15447446_SNP [dm6]	C	T	4.410e^-4	1	SYNONYMOUS_CODING Scamp UTR_3_PRIME Scamp
2L	2617256	2L_2617256_SNP [dm3] 2L_2617256_SNP [dm6]	T	C	4.413e^-4	1	INTERGENIC
2R	19185489	2R_19185489_SNP [dm3] 2R_23297966_SNP [dm6]	T	C	4.414e^-4	1	INTERGENIC
3R	18452094	3R_18452094_SNP [dm3] 3R_22626372_SNP [dm6]	T	A	4.420e^-4	1	UTR_5_PRIME loco INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17839600	2R_17839600_SNP [dm3] 2R_21952095_SNP [dm6]	C	A	4.422e^-4	1	SYNONYMOUS_CODING CG13488
2L	5408567	2L_5408567_SNP [dm3] 2L_5408567_SNP [dm6]	C	T	4.434e^-4	1	INTRON H15	TF binding site mE1_TFBS_cad
3L	12651575	3L_12651575_DEL [dm3] 3L_12658475_DEL [dm6]	CT	C	4.438e^-4	1	UPSTREAM CR44553 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	19845414	2L_19845414_SNP [dm3] 2L_19845414_SNP [dm6]	C	T	4.442e^-4	1	START_GAINED sick UTR_5_PRIME sick INTRON sick
X	14109036	X_14109036_SNP [dm3] X_14215003_SNP [dm6]	G	A	4.447e^-4	1	INTRON l_1_G0007
3L	10812214	3L_10812214_SNP [dm3] 3L_10819114_SNP [dm6]	G	T	4.448e^-4	1	INTERGENIC
2R	7096717	2R_7096717_SNP [dm3] 2R_11209212_SNP [dm6]	G	T	4.461e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7432047	2L_7432047_SNP [dm3] 2L_7432047_SNP [dm6]	G	A	4.468e^-4	1	INTRON CG5958
3R	15158774	3R_15158774_SNP [dm3] 3R_19333052_SNP [dm6]	A	T	4.471e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15158775	3R_15158775_SNP [dm3] 3R_19333053_SNP [dm6]	C	T	4.471e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18055364	X_18055364_SNP [dm3] X_18161331_SNP [dm6]	A	T	4.478e^-4	1	INTRON Frq1
2R	5685812	2R_5685812_SNP [dm3] 2R_9798307_SNP [dm6]	A	G	4.482e^-4	1	DOWNSTREAM CG1698 INTRON CG1688
2L	20704168	2L_20704168_SNP [dm3] 2L_20704168_SNP [dm6]	A	T	4.486e^-4	1	INTRON Hr38
3L	1079575	3L_1079575_DEL [dm3] 3L_1079575_DEL [dm6]	TT	T	4.490e^-4	1	INTRON bab1
2R	5674429	2R_5674429_SNP [dm3] 2R_9786924_SNP [dm6]	C	T	4.492e^-4	1	INTRON CG1688
2L	1735658	2L_1735658_DEL [dm3] 2L_1735658_DEL [dm6]	TACTGTATGG	T	4.497e^-4	1	INTRON CG17646
2L	8506317	2L_8506317_SNP [dm3] 2L_8506317_SNP [dm6]	G	T	4.503e^-4	1	INTRON Dh31
2L	9213970	2L_9213970_SNP [dm3] 2L_9213970_SNP [dm6]	T	A	4.503e^-4	1	INTRON tai
2R	19125107	2R_19125107_SNP [dm3] 2R_23237584_SNP [dm6]	A	C	4.511e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6002014	X_6002014_SNP [dm3] X_6107981_SNP [dm6]	A	C	4.530e^-4	1	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14566845	2R_14566845_SNP [dm3] 2R_18679340_SNP [dm6]	C	G	4.538e^-4	1	SYNONYMOUS_CODING CG44435 UTR_3_PRIME CG44434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	18634096	2R_18634096_SNP [dm3] 2R_22746591_SNP [dm6]	G	T	4.546e^-4	1	INTRON CG42260
2R	20359547	2R_20359547_SNP [dm3] 2R_24472024_SNP [dm6]	G	C	4.547e^-4	1	UPSTREAM CG3492 INTRON CG13579
3L	7635039	3L_7635039_SNP [dm3] 3L_7641939_SNP [dm6]	A	G	4.550e^-4	1	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3L	15649980	3L_15649980_SNP [dm3] 3L_15656880_SNP [dm6]	A	C	4.556e^-4	1	UPSTREAM Eig71Ee & 1 other INTRON Eig71Ef
3R	7346544	3R_7346544_SNP [dm3] 3R_11520822_SNP [dm6]	C	T	4.558e^-4	1	INTERGENIC
3R	15013532	3R_15013532_SNP [dm3] 3R_19187810_SNP [dm6]	G	C	4.559e^-4	1	INTRON CG31475
2R	2670311	2R_2670311_SNP [dm3] 2R_6782806_SNP [dm6]	G	T	4.560e^-4	1	INTRON Epac
2R	16678625	2R_16678625_SNP [dm3] 2R_20791120_SNP [dm6]	G	T	4.566e^-4	1	UTR_5_PRIME CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
2L	17282548	2L_17282548_SNP [dm3] 2L_17282548_SNP [dm6]	C	T	4.570e^-4	1	INTERGENIC
2R	7410577	2R_7410577_SNP [dm3] 2R_11523072_SNP [dm6]	C	G	4.578e^-4	1	DOWNSTREAM en INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
X	8176232	X_8176232_SNP [dm3] X_8282199_SNP [dm6]	C	T	4.582e^-4	1	UTR_3_PRIME nAChRalpha3 DOWNSTREAM nAChRalpha3
2L	1646842	2L_1646842_SNP [dm3] 2L_1646842_SNP [dm6]	C	T	4.586e^-4	1	DOWNSTREAM CR45695 INTERGENIC
2R	20380267	2R_20380267_SNP [dm3] 2R_24492744_SNP [dm6]	G	T	4.588e^-4	1	SPLICE_SITE_REGION CG13589 DOWNSTREAM CG13590 INTRON CG13589
2R	14649714	2R_14649714_SNP [dm3] 2R_18762209_SNP [dm6]	C	T	4.599e^-4	1	UTR_5_PRIME Mctp
2R	4010487	2R_4010487_SNP [dm3] 2R_8122982_SNP [dm6]	A	T	4.605e^-4	1	UTR_5_PRIME Asap UPSTREAM Nup50	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	16934864	3R_16934864_SNP [dm3] 3R_21109142_SNP [dm6]	T	A	4.626e^-4	1	INTRON rtet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7784184	2L_7784184_SNP [dm3] 2L_7784184_SNP [dm6]	T	C	4.637e^-4	1	SYNONYMOUS_CODING CG7154	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	20377334	2R_20377334_SNP [dm3] 2R_24489811_SNP [dm6]	C	G	4.637e^-4	1	UTR_3_PRIME CG13579	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2394693	2L_2394693_SNP [dm3] 2L_2394693_SNP [dm6]	T	C	4.638e^-4	1	INTRON VGlut
3L	14007650	3L_14007650_SNP [dm3] 3L_14014550_SNP [dm6]	G	A	4.639e^-4	1	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7342598	2R_7342598_SNP [dm3] 2R_11455093_SNP [dm6]	A	G	4.647e^-4	1	INTRON E_Pc_	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25427702	3R_25427702_SNP [dm3] 3R_29601980_SNP [dm6]	T	A	4.648e^-4	1	INTRON alph
2R	17284273	2R_17284273_SNP [dm3] 2R_21396768_SNP [dm6]	G	A	4.649e^-4	1	INTRON Sdc
3R	3887813	3R_3887813_SNP [dm3] 3R_8062091_SNP [dm6]	G	A	4.653e^-4	1	INTRON mAChR-B	TF binding site mE1_TFBS_inv
2L	6234651	2L_6234651_SNP [dm3] 2L_6234651_SNP [dm6]	A	G	4.660e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	18056689	X_18056689_SNP [dm3] X_18162656_SNP [dm6]	C	A	4.661e^-4	1	INTRON Frq1
2R	14035047	2R_14035047_SNP [dm3] 2R_18147542_SNP [dm6]	C	A	4.667e^-4	1	UTR_3_PRIME CG17680 DOWNSTREAM CG5742 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7785951	3L_7785951_SNP [dm3] 3L_7792851_SNP [dm6]	G	C	4.696e^-4	1	INTRON CG32369
3R	23366788	3R_23366788_SNP [dm3] 3R_27541066_SNP [dm6]	C	T	4.697e^-4	1	INTERGENIC
X	4641276	X_4641276_SNP [dm3] X_4747243_SNP [dm6]	C	A	4.697e^-4	1	INTERGENIC
3R	26153742	3R_26153742_SNP [dm3] 3R_30328020_SNP [dm6]	T	C	4.702e^-4	1	INTRON hdc
3L	10631889	3L_10631889_SNP [dm3] 3L_10638789_SNP [dm6]	C	T	4.704e^-4	1	UPSTREAM E_z_ & 1 other INTRON CG8009
3L	1288381	3L_1288381_SNP [dm3] 3L_1288381_SNP [dm6]	C	G	4.710e^-4	1	DOWNSTREAM CG32333 INTRON CG32333
2L	2686389	2L_2686389_SNP [dm3] 2L_2686389_SNP [dm6]	G	A	4.718e^-4	1	INTRON CG31690
2L	11922449	2L_11922449_SNP [dm3] 2L_11922449_SNP [dm6]	T	A	4.725e^-4	1	INTRON Pde1c
2L	11182527	2L_11182527_DEL [dm3] 2L_11182527_DEL [dm6]	TC	T	4.728e^-4	1	INTRON Ca-beta
X	18055582	X_18055582_SNP [dm3] X_18161549_SNP [dm6]	C	T	4.730e^-4	1	INTRON Frq1
X	21324167	X_21324167_SNP [dm3] X_21453140_SNP [dm6]	T	C	4.731e^-4	1	INTRON CG42343
2R	20365330	2R_20365330_SNP [dm3] 2R_24477807_SNP [dm6]	C	T	4.742e^-4	1	INTRON CG13579	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2546369	X_2546369_SNP [dm3] X_2652336_SNP [dm6]	G	C	4.743e^-4	1	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9146143	2L_9146143_DEL [dm3] 2L_9146143_DEL [dm6]	CC	T	4.748e^-4	1	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17143254	2R_17143254_SNP [dm3] 2R_21255749_SNP [dm6]	C	G	4.750e^-4	1	UTR_5_PRIME Rgk3 UPSTREAM Rgk3
3L	8907216	3L_8907216_SNP [dm3] 3L_8914116_SNP [dm6]	C	G	4.750e^-4	1	INTRON Tsp66E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9213969	2L_9213969_SNP [dm3] 2L_9213969_SNP [dm6]	A	T	4.754e^-4	1	INTRON tai
3L	6085163	3L_6085163_SNP [dm3] 3L_6092063_SNP [dm6]	C	T	4.755e^-4	1	UTR_3_PRIME CG13293 DOWNSTREAM CG10469
3R	4760259	3R_4760259_SNP [dm3] 3R_8934537_SNP [dm6]	T	C	4.759e^-4	1	UPSTREAM osk EXON CR44020	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	3888954	3R_3888954_SNP [dm3] 3R_8063232_SNP [dm6]	G	A	4.772e^-4	1	INTRON mAChR-B
2R	9138713	2R_9138713_SNP [dm3] 2R_13251208_SNP [dm6]	T	G	4.780e^-4	1	NON_SYNONYMOUS_CODING CG4712 DOWNSTREAM CG4714
2L	1735682	2L_1735682_DEL [dm3] 2L_1735682_DEL [dm6]	GGTACCT	C	4.784e^-4	1	INTRON CG17646
2R	4457639	2R_4457639_SNP [dm3] 2R_8570134_SNP [dm6]	C	G	4.787e^-4	1	UPSTREAM Cyp6a13 EXON Cyp6a15Psi
2L	6892144	2L_6892144_SNP [dm3] 2L_6892144_SNP [dm6]	C	G	4.788e^-4	1	INTRON Nlg2
2L	20507183	2L_20507183_SNP [dm3] 2L_20507183_SNP [dm6]	A	G	4.803e^-4	1	INTERGENIC
3R	8344006	3R_8344006_SNP [dm3] 3R_12518284_SNP [dm6]	A	G	4.811e^-4	1	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	6129787	2R_6129787_SNP [dm3] 2R_10242282_SNP [dm6]	G	A	4.816e^-4	1	INTRON Hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6356990	3L_6356990_SNP [dm3] 3L_6363890_SNP [dm6]	C	T	4.819e^-4	1	INTERGENIC
2R	5660256	2R_5660256_SNP [dm3] 2R_9772751_SNP [dm6]	T	G	4.826e^-4	1	INTRON CG1688	TF binding site mE1_TFBS_cad
2L	13053748	2L_13053748_SNP [dm3] 2L_13053748_SNP [dm6]	A	C	4.827e^-4	1	INTRON CG9932
3L	2903324	3L_2903324_SNP [dm3] 3L_2903324_SNP [dm6]	C	T	4.836e^-4	1	INTRON Shab
3L	12539066	3L_12539066_SNP [dm3] 3L_12545966_SNP [dm6]	G	C	4.836e^-4	1	INTRON sowah
2L	10788123	2L_10788123_SNP [dm3] 2L_10788123_SNP [dm6]	A	G	4.842e^-4	1	INTRON CG31869
3L	7632723	3L_7632723_SNP [dm3] 3L_7639623_SNP [dm6]	G	C	4.858e^-4	1	UPSTREAM snoRNA:Me18S-A1806 DOWNSTREAM CG33276 & 1 other INTERGENIC
2R	6666226	2R_6666226_SNP [dm3] 2R_10778721_SNP [dm6]	T	G	4.862e^-4	1	INTRON CG33144
X	12204364	X_12204364_SNP [dm3] X_12310331_SNP [dm6]	A	T	4.868e^-4	1	INTRON Ten-a
2L	1649811	2L_1649811_SNP [dm3] 2L_1649811_SNP [dm6]	G	A	4.877e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16824644	3L_16824644_SNP [dm3] 3L_16831544_SNP [dm6]	A	G	4.895e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8407673	2R_8407673_SNP [dm3] 2R_12520168_SNP [dm6]	G	A	4.897e^-4	1	NON_SYNONYMOUS_CODING CG8569	TF binding site mE1_TFBS_cad
2R	14641561	2R_14641561_INS [dm3] 2R_18754056_INS [dm6]	A	ATA	4.904e^-4	1	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2
3R	23367216	3R_23367216_SNP [dm3] 3R_27541494_SNP [dm6]	G	A	4.911e^-4	1	INTERGENIC
3R	20830485	3R_20830485_SNP [dm3] 3R_25004763_SNP [dm6]	C	T	4.912e^-4	1	INTRON tnc	TF binding site mE1_TFBS_chinmo
3L	741383	3L_741383_SNP [dm3] 3L_741383_SNP [dm6]	C	A	4.920e^-4	1	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	967956	3L_967956_SNP [dm3] 3L_967956_SNP [dm6]	A	C	4.941e^-4	1	INTRON Glut1
2L	6706434	2L_6706434_SNP [dm3] 2L_6706434_SNP [dm6]	A	G	4.944e^-4	1	INTRON Tsp
2L	2192659	2L_2192659_SNP [dm3] 2L_2192659_SNP [dm6]	A	G	4.945e^-4	1	SYNONYMOUS_CODING CG34172 UPSTREAM CG10874	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	3791103	2L_3791103_SNP [dm3] 2L_3791103_SNP [dm6]	C	A	4.954e^-4	1	SYNONYMOUS_CODING CG3921
X	20689064	X_20689064_SNP [dm3] X_20818037_SNP [dm6]	A	G	4.973e^-4	1	INTRON shakB
3L	2545274	3L_2545274_SNP [dm3] 3L_2545274_SNP [dm6]	T	C	4.989e^-4	1	INTRON Spn
2R	15886497	2R_15886497_SNP [dm3] 2R_19998992_SNP [dm6]	T	C	4.991e^-4	1	INTERGENIC
3L	9225981	3L_9225981_SNP [dm3] 3L_9232881_SNP [dm6]	T	C	4.993e^-4	1	INTERGENIC
3L	6110193	3L_6110193_SNP [dm3] 3L_6117093_SNP [dm6]	C	T	4.995e^-4	1	INTRON Ets65A
3L	2575139	3L_2575139_SNP [dm3] 3L_2575139_SNP [dm6]	C	T	4.998e^-4	1	INTRON msn
2R	14417255	2R_14417255_SNP [dm3] 2R_18529750_SNP [dm6]	T	A	4.999e^-4	1	INTRON CG10924	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	466147	3L_466147_SNP [dm3] 3L_466147_SNP [dm6]	G	A	5.001e^-4	1	INTRON klar
2L	3832849	2L_3832849_SNP [dm3] 2L_3832849_SNP [dm6]	C	T	5.007e^-4	1	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	7632728	3L_7632728_SNP [dm3] 3L_7639628_SNP [dm6]	T	A	5.012e^-4	1	UPSTREAM snoRNA:Me18S-A1806 DOWNSTREAM CG33276 & 1 other INTERGENIC
3R	13245153	3R_13245153_SNP [dm3] 3R_17419431_SNP [dm6]	A	T	5.015e^-4	1	DOWNSTREAM CG42834 INTERGENIC
2R	14416919	2R_14416919_SNP [dm3] 2R_18529414_SNP [dm6]	C	G	5.022e^-4	1	INTRON CG10924	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5783795	2R_5783795_SNP [dm3] 2R_9896290_SNP [dm6]	C	A	5.024e^-4	1	NON_SYNONYMOUS_CODING CG30007
2L	1838337	2L_1838337_SNP [dm3] 2L_1838337_SNP [dm6]	C	T	5.025e^-4	1	INTRON wry
3L	739619	3L_739619_SNP [dm3] 3L_739619_SNP [dm6]	G	A	5.026e^-4	1	UPSTREAM hng3 INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14765023	3L_14765023_SNP [dm3] 3L_14771923_SNP [dm6]	A	G	5.028e^-4	1	SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_cad
3L	6428714	3L_6428714_SNP [dm3] 3L_6435614_SNP [dm6]	C	T	5.030e^-4	1	INTRON CG42747	TF binding site mE1_TFBS_cad
3L	18553109	3L_18553109_SNP [dm3] 3L_18560009_SNP [dm6]	C	G	5.031e^-4	1	UPSTREAM AstC-R1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7741271	X_7741271_SNP [dm3] X_7847238_SNP [dm6]	G	T	5.032e^-4	1	INTERGENIC
2R	18349468	2R_18349468_SNP [dm3] 2R_22461963_SNP [dm6]	C	T	5.036e^-4	1	INTRON CG10384
X	16614960	X_16614960_SNP [dm3] X_16720927_SNP [dm6]	C	A	5.037e^-4	1	UPSTREAM CG32572 INTRON CG34325
2R	13950656	2R_13950656_SNP [dm3] 2R_18063151_SNP [dm6]	C	A	5.038e^-4	1	INTRON CG34386
3L	6535404	3L_6535404_SNP [dm3] 3L_6542304_SNP [dm6]	C	A	5.048e^-4	1	INTRON sfl
2R	5676980	2R_5676980_SNP [dm3] 2R_9789475_SNP [dm6]	G	T	5.048e^-4	1	DOWNSTREAM CR44208 INTRON CG1688 EXON CR44208
X	18055571	X_18055571_SNP [dm3] X_18161538_SNP [dm6]	T	A	5.056e^-4	1	INTRON Frq1
2R	10270270	2R_10270270_SNP [dm3] 2R_14382765_SNP [dm6]	C	T	5.070e^-4	1	SYNONYMOUS_CODING Dh44-R1	TF binding site BDTNP1_TFBS_da
3L	7293460	3L_7293460_SNP [dm3] 3L_7300360_SNP [dm6]	C	T	5.071e^-4	1	INTRON unc-13-4A
2L	1922696	2L_1922696_SNP [dm3] 2L_1922696_SNP [dm6]	T	A	5.071e^-4	1	INTRON CG7337
2R	15329008	2R_15329008_SNP [dm3] 2R_19441503_SNP [dm6]	G	C	5.082e^-4	1	SYNONYMOUS_CODING Spt5 UPSTREAM RpL11	TF binding site mE1_TFBS_sens
2R	6129778	2R_6129778_SNP [dm3] 2R_10242273_SNP [dm6]	A	G	5.084e^-4	1	INTRON Hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9362348	2L_9362348_SNP [dm3] 2L_9362348_SNP [dm6]	A	C	5.085e^-4	1	INTERGENIC
2R	6668146	2R_6668146_SNP [dm3] 2R_10780641_SNP [dm6]	C	G	5.089e^-4	1	INTRON CG33144
3L	11851974	3L_11851974_SNP [dm3] 3L_11858874_SNP [dm6]	C	T	5.096e^-4	1	INTRON CG44837
2R	14604975	2R_14604975_SNP [dm3] 2R_18717470_SNP [dm6]	G	A	5.096e^-4	1	UPSTREAM Hs3st-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	12284150	X_12284150_INS [dm3] X_12390117_INS [dm6]	C	CC	5.098e^-4	1	INTERGENIC
3R	3805724	3R_3805724_SNP [dm3] 3R_7980002_SNP [dm6]	C	G	5.113e^-4	1	NON_SYNONYMOUS_CODING Sfp84E DOWNSTREAM Os-C
2R	2670296	2R_2670296_SNP [dm3] 2R_6782791_SNP [dm6]	C	A	5.116e^-4	1	INTRON Epac
3R	25234728	3R_25234728_SNP [dm3] 3R_29409006_SNP [dm6]	C	T	5.120e^-4	1	INTRON Ptp99A
3L	18554461	3L_18554461_INS [dm3] 3L_18561361_INS [dm6]	A	ATATATAAATCG...	5.127e^-4	1	INTRON AstC-R1
3L	7462350	3L_7462350_SNP [dm3] 3L_7469250_SNP [dm6]	G	A	5.135e^-4	1	DOWNSTREAM CG8543 & 3 others INTERGENIC
X	4377229	X_4377229_SNP [dm3] X_4483196_SNP [dm6]	G	T	5.144e^-4	1	SYNONYMOUS_CODING bi INTRON CR32773	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20366119	2R_20366119_SNP [dm3] 2R_24478596_SNP [dm6]	C	T	5.149e^-4	1	INTRON CG13579
2R	13950647	2R_13950647_SNP [dm3] 2R_18063142_SNP [dm6]	G	A	5.154e^-4	1	INTRON CG34386
3L	9992509	3L_9992509_SNP [dm3] 3L_9999409_SNP [dm6]	G	A	5.159e^-4	1	INTRON dpr6
2R	5818503	2R_5818503_SNP [dm3] 2R_9930998_SNP [dm6]	T	A	5.168e^-4	1	INTRON Mef2	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	9513842	2L_9513842_SNP [dm3] 2L_9513842_SNP [dm6]	A	T	5.169e^-4	1	INTRON CG33298
2R	5778962	2R_5778962_SNP [dm3] 2R_9891457_SNP [dm6]	T	G	5.170e^-4	1	UTR_5_PRIME CG1513 UPSTREAM CG30007 DOWNSTREAM CG30008	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	5903378	3L_5903378_SNP [dm3] 3L_5910278_SNP [dm6]	C	T	5.171e^-4	1	DOWNSTREAM CG13288 INTRON CG13288
3L	645224	3L_645224_SNP [dm3] 3L_645224_SNP [dm6]	C	A	5.173e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5373889	X_5373889_SNP [dm3] X_5479856_SNP [dm6]	A	G	5.173e^-4	1	INTRON SPR
3L	12756416	3L_12756416_SNP [dm3] 3L_12763316_SNP [dm6]	C	A	5.176e^-4	1	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	467336	3L_467336_SNP [dm3] 3L_467336_SNP [dm6]	A	G	5.178e^-4	1	INTRON klar
3R	24455539	3R_24455539_SNP [dm3] 3R_28629817_SNP [dm6]	T	C	5.213e^-4	1	INTRON CG10011
3R	22859757	3R_22859757_SNP [dm3] 3R_27034035_SNP [dm6]	C	A	5.214e^-4	1	INTRON RYa-R	TF binding site BDTNP1_TFBS_da
3L	18542881	3L_18542881_SNP [dm3] 3L_18549781_SNP [dm6]	A	T	5.222e^-4	1	INTERGENIC
2R	13320951	2R_13320951_SNP [dm3] 2R_17433446_SNP [dm6]	A	G	5.245e^-4	1	SYNONYMOUS_CODING EDTP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13006461	3L_13006461_SNP [dm3] 3L_13013361_SNP [dm6]	C	A	5.247e^-4	1	NON_SYNONYMOUS_CODING MICAL-like	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2392433	X_2392433_SNP [dm3] X_2498400_SNP [dm6]	A	G	5.254e^-4	1	INTRON trol
X	9735208	X_9735208_SNP [dm3] X_9841175_SNP [dm6]	A	C	5.257e^-4	1	INTRON CG32698
2L	13863121	2L_13863121_SNP [dm3] 2L_13863121_SNP [dm6]	A	G	5.264e^-4	1	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	2726548	2L_2726548_SNP [dm3] 2L_2726548_SNP [dm6]	A	G	5.269e^-4	1	INTRON CG31689
2R	13183160	2R_13183160_SNP [dm3] 2R_17295655_SNP [dm6]	T	A	5.280e^-4	1	INTRON mbl
2R	6213471	2R_6213471_SNP [dm3] 2R_10325966_SNP [dm6]	G	C	5.285e^-4	1	INTRON CG42732
2L	12320003	2L_12320003_INS [dm3] 2L_12320003_INS [dm6]	T	TT	5.288e^-4	1	INTERGENIC
X	12421798	X_12421798_SNP [dm3] X_12527765_SNP [dm6]	C	T	5.291e^-4	1	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
3L	8865817	3L_8865817_SNP [dm3] 3L_8872717_SNP [dm6]	A	G	5.293e^-4	1	INTRON dally	TF binding site BDTNP1_TFBS_twi
2R	19172210	2R_19172210_SNP [dm3] 2R_23284687_SNP [dm6]	T	C	5.294e^-4	1	SYNONYMOUS_CODING CG13541 UPSTREAM CG3124
2R	13950629	2R_13950629_SNP [dm3] 2R_18063124_SNP [dm6]	G	A	5.294e^-4	1	INTRON CG34386
2R	13950630	2R_13950630_INS [dm3] 2R_18063125_INS [dm6]	T	TAATATTAATAATAATATTA...	5.294e^-4	1	INTRON CG34386
2R	13950636	2R_13950636_SNP [dm3] 2R_18063131_SNP [dm6]	C	A	5.294e^-4	1	INTRON CG34386
2R	13950638	2R_13950638_SNP [dm3] 2R_18063133_SNP [dm6]	T	A	5.294e^-4	1	INTRON CG34386
2R	13950640	2R_13950640_MNP [dm3] 2R_18063135_MNP [dm6]	CCC	ATA	5.294e^-4	1	INTRON CG34386
2R	13950644	2R_13950644_SNP [dm3] 2R_18063139_SNP [dm6]	T	A	5.294e^-4	1	INTRON CG34386
2R	13950645	2R_13950645_SNP [dm3] 2R_18063140_SNP [dm6]	C	T	5.294e^-4	1	INTRON CG34386
3L	18555822	3L_18555822_SNP [dm3] 3L_18562722_SNP [dm6]	A	G	5.297e^-4	1	INTRON AstC-R1
2L	3386642	2L_3386642_SNP [dm3] 2L_3386642_SNP [dm6]	G	T	5.302e^-4	1	DOWNSTREAM CR45301 & 1 other INTERGENIC
2L	15348576	2L_15348576_SNP [dm3] 2L_15348576_SNP [dm6]	T	A	5.310e^-4	1	INTERGENIC
2L	9625097	2L_9625097_SNP [dm3] 2L_9625097_SNP [dm6]	C	G	5.317e^-4	1	NON_SYNONYMOUS_CODING CG31882
2L	9625103	2L_9625103_SNP [dm3] 2L_9625103_SNP [dm6]	C	T	5.317e^-4	1	NON_SYNONYMOUS_CODING CG31882
2L	3396730	2L_3396730_SNP [dm3] 2L_3396730_SNP [dm6]	T	C	5.323e^-4	1	DOWNSTREAM CR44792 INTERGENIC
3R	3888930	3R_3888930_SNP [dm3] 3R_8063208_SNP [dm6]	C	G	5.326e^-4	1	INTRON mAChR-B
2L	12359759	2L_12359759_SNP [dm3] 2L_12359759_SNP [dm6]	C	A	5.328e^-4	1	INTRON bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2729305	2L_2729305_SNP [dm3] 2L_2729305_SNP [dm6]	A	G	5.336e^-4	1	UPSTREAM CG31689 INTRON CG31689
3L	7491742	3L_7491742_SNP [dm3] 3L_7498642_SNP [dm6]	A	T	5.340e^-4	1	UTR_5_PRIME CG8539	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3902687	3R_3902687_SNP [dm3] 3R_8076965_SNP [dm6]	T	C	5.340e^-4	1	INTRON mAChR-B	TF binding site mE1_TFBS_HSA
2R	13183428	2R_13183428_SNP [dm3] 2R_17295923_SNP [dm6]	A	G	5.341e^-4	1	INTRON mbl
2R	13183429	2R_13183429_SNP [dm3] 2R_17295924_SNP [dm6]	A	G	5.341e^-4	1	INTRON mbl
3L	6398207	3L_6398207_SNP [dm3] 3L_6405107_SNP [dm6]	G	A	5.345e^-4	1	INTRON CG42747
2R	19179258	2R_19179258_SNP [dm3] 2R_23291735_SNP [dm6]	T	A	5.365e^-4	1	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	12421912	X_12421912_SNP [dm3] X_12527879_SNP [dm6]	A	T	5.368e^-4	1	INTRON CG43921
2R	15311676	2R_15311676_SNP [dm3] 2R_19424171_SNP [dm6]	C	T	5.380e^-4	1	UPSTREAM CalpA & 1 other INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	20213021	3R_20213021_SNP [dm3] 3R_24387299_SNP [dm6]	A	C	5.383e^-4	1	INTRON CG5768	TF binding site BDTNP1_TFBS_sna
X	19630752	X_19630752_SNP [dm3] X_19736719_SNP [dm6]	A	T	5.384e^-4	1	INTRON CG14234	TF binding site mE1_TFBS_cad
X	12421985	X_12421985_DEL [dm3] X_12527952_DEL [dm6]	CTAACAC	C	5.388e^-4	1	INTRON CG43921
2R	13183194	2R_13183194_SNP [dm3] 2R_17295689_SNP [dm6]	C	A	5.388e^-4	1	INTRON mbl
3R	6473711	3R_6473711_SNP [dm3] 3R_10647989_SNP [dm6]	A	G	5.392e^-4	1	INTERGENIC
3L	821420	3L_821420_SNP [dm3] 3L_821420_SNP [dm6]	A	G	5.394e^-4	1	EXON CR43883	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18505370	3L_18505370_SNP [dm3] 3L_18512270_SNP [dm6]	T	A	5.398e^-4	1	INTERGENIC
2R	5152985	2R_5152985_SNP [dm3] 2R_9265480_SNP [dm6]	T	C	5.403e^-4	1	INTRON Pkn
2R	6129796	2R_6129796_SNP [dm3] 2R_10242291_SNP [dm6]	G	A	5.418e^-4	1	INTRON Hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6964351	2R_6964351_SNP [dm3] 2R_11076846_SNP [dm6]	C	A	5.427e^-4	1	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4165191	3L_4165191_SNP [dm3] 3L_4165191_SNP [dm6]	A	T	5.429e^-4	1	INTRON mas
2R	13183205	2R_13183205_INS [dm3] 2R_17295700_INS [dm6]	T	TTCATT	5.457e^-4	1	INTRON mbl
3R	21341152	3R_21341152_SNP [dm3] 3R_25515430_SNP [dm6]	A	T	5.465e^-4	1	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5685624	2R_5685624_SNP [dm3] 2R_9798119_SNP [dm6]	G	T	5.466e^-4	1	DOWNSTREAM CG1698 INTRON CG1688
3R	19248812	3R_19248812_SNP [dm3] 3R_23423090_SNP [dm6]	C	T	5.471e^-4	1	INTRON CG4374	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	5676211	2R_5676211_SNP [dm3] 2R_9788706_SNP [dm6]	T	G	5.472e^-4	1	INTRON CG1688 EXON CR44208
2R	6129783	2R_6129783_SNP [dm3] 2R_10242278_SNP [dm6]	T	A	5.479e^-4	1	INTRON Hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5784138	2R_5784138_SNP [dm3] 2R_9896633_SNP [dm6]	A	G	5.485e^-4	1	NON_SYNONYMOUS_CODING CG30007
2L	8890559	2L_8890559_SNP [dm3] 2L_8890559_SNP [dm6]	A	C	5.485e^-4	1	UPSTREAM CG42713 INTERGENIC
3R	18529176	3R_18529176_SNP [dm3] 3R_22703454_SNP [dm6]	C	T	5.487e^-4	1	SYNONYMOUS_CODING CG6972 DOWNSTREAM CG13842	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10226699	3L_10226699_SNP [dm3] 3L_10233599_SNP [dm6]	A	G	5.491e^-4	1	INTERGENIC
3L	5192448	3L_5192448_SNP [dm3] 3L_5199348_SNP [dm6]	A	C	5.506e^-4	1	INTRON shep
3L	8302578	3L_8302578_SNP [dm3] 3L_8309478_SNP [dm6]	A	G	5.511e^-4	1	UPSTREAM BI-1 EXON CR45409	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20369060	3R_20369060_SNP [dm3] 3R_24543338_SNP [dm6]	T	A	5.516e^-4	1	UTR_5_PRIME CG5789 INTRON CG5789
3R	20369068	3R_20369068_SNP [dm3] 3R_24543346_SNP [dm6]	A	C	5.516e^-4	1	UTR_5_PRIME CG5789 INTRON CG5789
3L	9970181	3L_9970181_SNP [dm3] 3L_9977081_SNP [dm6]	T	C	5.517e^-4	1	INTRON dpr6
2R	20363917	2R_20363917_SNP [dm3] 2R_24476394_SNP [dm6]	G	A	5.524e^-4	1	DOWNSTREAM CG16837 INTRON CG13579
2L	9363258	2L_9363258_SNP [dm3] 2L_9363258_SNP [dm6]	T	C	5.538e^-4	1	INTERGENIC
X	3030170	X_3030170_SNP [dm3] X_3136137_SNP [dm6]	A	T	5.544e^-4	1	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	19479854	3L_19479854_SNP [dm3] 3L_19486754_SNP [dm6]	A	T	5.548e^-4	1	UPSTREAM brv1 & 1 other EXON pncr009:3L
2R	5347326	2R_5347326_SNP [dm3] 2R_9459821_SNP [dm6]	A	T	5.549e^-4	1	INTRON Camta	TF binding site mE1_TFBS_inv
2R	3442805	2R_3442805_SNP [dm3] 2R_7555300_SNP [dm6]	G	A	5.550e^-4	1	INTRON Corin
2R	3442825	2R_3442825_SNP [dm3] 2R_7555320_SNP [dm6]	T	C	5.550e^-4	1	INTRON Corin
2R	4008828	2R_4008828_SNP [dm3] 2R_8121323_SNP [dm6]	C	T	5.552e^-4	1	INTRON Asap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2R	15039854	2R_15039854_SNP [dm3] 2R_19152349_SNP [dm6]	T	G	5.562e^-4	1	INTRON ena
X	14774122	X_14774122_INS [dm3] X_14880089_INS [dm6]	A	AA	5.576e^-4	1	INTRON Flo2 & 2 others
2R	3911049	2R_3911049_DEL [dm3] 2R_8023544_DEL [dm6]	GCTCG	G	5.582e^-4	1	EXON CR45267

By genomic position
Variant impact
Gene name

Cuticul_n_C31 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results