DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.472e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.03985
In_3R_Mo	0.04026

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	9.3701	0.0092
In_3R_Mo	5.735	0.0568

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1882 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	3801353	3R_3801353_SNP [dm3] 3R_7975631_SNP [dm6]	T	C	2.222e^-7	0.417	SYNONYMOUS_CODING CD98hc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8113408	2R_8113408_SNP [dm3] 2R_12225903_SNP [dm6]	G	T	1.011e^-6	0.748	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	6659878	3R_6659878_SNP [dm3] 3R_10834156_SNP [dm6]	G	C	1.302e^-6	0.748	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4047994	2L_4047994_SNP [dm3] 2L_4047994_SNP [dm6]	T	A	1.904e^-6	0.748	INTRON ed	TF binding site mE1_TFBS_chinmo
2R	1072336	2R_1072336_INS [dm3] 2R_5184831_INS [dm6]	C	CGCC	2.688e^-6	0.748	INTRON Nipped-A
3R	6659901	3R_6659901_SNP [dm3] 3R_10834179_SNP [dm6]	A	C	3.152e^-6	0.748	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6659902	3R_6659902_DEL [dm3] 3R_10834180_DEL [dm6]	GCTCCAG	G	3.280e^-6	0.748	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13188174	3L_13188174_SNP [dm3] 3L_13195074_SNP [dm6]	C	G	3.544e^-6	0.748	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13210675	X_13210675_SNP [dm3] X_13316642_SNP [dm6]	G	A	3.983e^-6	0.748	INTRON IP3K2
2R	1072326	2R_1072326_INS [dm3] 2R_5184821_INS [dm6]	T	TT	4.447e^-6	0.748	INTRON Nipped-A
3L	13188081	3L_13188081_SNP [dm3] 3L_13194981_SNP [dm6]	C	A	5.399e^-6	0.748	INTERGENIC
3L	13188049	3L_13188049_SNP [dm3] 3L_13194949_SNP [dm6]	C	A	6.256e^-6	0.748	INTERGENIC
3L	9191571	3L_9191571_SNP [dm3] 3L_9198471_SNP [dm6]	G	A	6.949e^-6	0.748	INTERGENIC
2L	10803280	2L_10803280_SNP [dm3] 2L_10803280_SNP [dm6]	G	A	7.232e^-6	0.748	UPSTREAM CR44581 DOWNSTREAM Nos INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8112670	2R_8112670_SNP [dm3] 2R_12225165_SNP [dm6]	C	T	7.318e^-6	0.748	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
X	5014312	X_5014312_SNP [dm3] X_5120279_SNP [dm6]	G	A	7.689e^-6	0.748	INTRON rg & 1 other
2L	10803278	2L_10803278_SNP [dm3] 2L_10803278_SNP [dm6]	C	T	8.591e^-6	0.748	UPSTREAM CR44581 DOWNSTREAM Nos INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13188077	3L_13188077_SNP [dm3] 3L_13194977_SNP [dm6]	A	G	8.920e^-6	0.748	INTERGENIC
3L	13188083	3L_13188083_SNP [dm3] 3L_13194983_SNP [dm6]	C	T	8.920e^-6	0.748	INTERGENIC
3L	13188084	3L_13188084_SNP [dm3] 3L_13194984_SNP [dm6]	C	T	8.920e^-6	0.748	INTERGENIC
X	13210651	X_13210651_SNP [dm3] X_13316618_SNP [dm6]	G	C	8.972e^-6	0.748	INTRON IP3K2
3L	13188108	3L_13188108_SNP [dm3] 3L_13195008_SNP [dm6]	G	C	9.164e^-6	0.748	INTERGENIC	TF binding site mE1_TFBS_HSA
X	12422708	X_12422708_SNP [dm3] X_12528675_SNP [dm6]	A	C	9.187e^-6	0.748	INTRON CG43921
3R	3841967	3R_3841967_SNP [dm3] 3R_8016245_SNP [dm6]	C	T	9.575e^-6	0.748	UTR_3_PRIME Pbp95 & 1 other DOWNSTREAM CG2747	TF binding site mE1_TFBS_sbb
3R	13364199	3R_13364199_SNP [dm3] 3R_17538477_SNP [dm6]	C	T	1.019e^-5	0.765	SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
3R	13364203	3R_13364203_SNP [dm3] 3R_17538481_SNP [dm6]	G	A	1.069e^-5	0.771	NON_SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
2L	10803270	2L_10803270_SNP [dm3] 2L_10803270_SNP [dm6]	A	T	1.201e^-5	0.823	UPSTREAM CR44581 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10373469	3L_10373469_SNP [dm3] 3L_10380369_SNP [dm6]	T	C	1.228e^-5	0.823	INTERGENIC
2L	10803285	2L_10803285_SNP [dm3] 2L_10803285_SNP [dm6]	T	G	1.381e^-5	0.834	UPSTREAM CR44581 DOWNSTREAM Nos INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13364202	3R_13364202_SNP [dm3] 3R_17538480_SNP [dm6]	G	A	1.394e^-5	0.834	SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
3R	14342260	3R_14342260_SNP [dm3] 3R_18516538_SNP [dm6]	A	G	1.465e^-5	0.834	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	900071	2L_900071_SNP [dm3] 2L_900071_SNP [dm6]	A	G	1.526e^-5	0.834	SYNONYMOUS_CODING Lsp1beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10803300	2L_10803300_SNP [dm3] 2L_10803300_SNP [dm6]	T	G	1.555e^-5	0.834	UPSTREAM CR44581 DOWNSTREAM Nos INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10803261	2L_10803261_SNP [dm3] 2L_10803261_SNP [dm6]	G	A	1.608e^-5	0.834	UPSTREAM CR44581 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	3356245	2R_3356245_SNP [dm3] 2R_7468740_SNP [dm6]	C	A	1.802e^-5	0.834	INTRON Aldh-III
2L	18684237	2L_18684237_SNP [dm3] 2L_18684237_SNP [dm6]	G	A	1.837e^-5	0.834	UTR_3_PRIME msl-1 DOWNSTREAM CG31751 & 1 other
3R	14342166	3R_14342166_SNP [dm3] 3R_18516444_SNP [dm6]	T	C	1.864e^-5	0.834	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	15402084	2L_15402084_SNP [dm3] 2L_15402084_SNP [dm6]	T	C	1.874e^-5	0.834	INTERGENIC
3R	8606136	3R_8606136_SNP [dm3] 3R_12780414_SNP [dm6]	T	G	1.944e^-5	0.834	INTRON beat-Vc
2R	8109912	2R_8109912_SNP [dm3] 2R_12222407_SNP [dm6]	C	A	1.962e^-5	0.834	INTERGENIC
2R	8106282	2R_8106282_SNP [dm3] 2R_12218777_SNP [dm6]	A	C	1.969e^-5	0.834	INTERGENIC
3L	13188525	3L_13188525_SNP [dm3] 3L_13195425_SNP [dm6]	G	A	1.972e^-5	0.834	INTERGENIC
3R	15402898	3R_15402898_SNP [dm3] 3R_19577176_SNP [dm6]	C	T	2.132e^-5	0.834	INTRON Dys
2R	15381439	2R_15381439_INS [dm3] 2R_19493934_INS [dm6]	A	ATTTT	2.143e^-5	0.834	UTR_3_PRIME Rep DOWNSTREAM hpo
3L	10378650	3L_10378650_SNP [dm3] 3L_10385550_SNP [dm6]	C	A	2.143e^-5	0.834	UPSTREAM CR45245 INTERGENIC
2L	10803301	2L_10803301_SNP [dm3] 2L_10803301_SNP [dm6]	A	C	2.242e^-5	0.834	UPSTREAM CR44581 DOWNSTREAM Nos INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6669804	3R_6669804_SNP [dm3] 3R_10844082_SNP [dm6]	C	T	2.279e^-5	0.834	SYNONYMOUS_CODING Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	6669810	3R_6669810_SNP [dm3] 3R_10844088_SNP [dm6]	G	A	2.279e^-5	0.834	SYNONYMOUS_CODING Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	8109725	2R_8109725_SNP [dm3] 2R_12222220_SNP [dm6]	G	C	2.302e^-5	0.834	INTERGENIC
3R	14342272	3R_14342272_SNP [dm3] 3R_18516550_SNP [dm6]	A	T	2.327e^-5	0.834	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	10092491	2L_10092491_SNP [dm3] 2L_10092491_SNP [dm6]	A	T	2.337e^-5	0.834	UPSTREAM CG13133 INTRON CG44153
2R	8109605	2R_8109605_SNP [dm3] 2R_12222100_SNP [dm6]	C	A	2.387e^-5	0.834	INTERGENIC
2R	7534789	2R_7534789_SNP [dm3] 2R_11647284_SNP [dm6]	T	C	2.397e^-5	0.834	INTRON CG9003	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15381433	2R_15381433_DEL [dm3] 2R_19493928_DEL [dm6]	TACA	T	2.404e^-5	0.834	UTR_3_PRIME Rep DOWNSTREAM hpo
3R	6539705	3R_6539705_INS [dm3] 3R_10713983_INS [dm6]	C	CGC	2.446e^-5	0.834	UPSTREAM CG4073 INTERGENIC
3R	2167567	3R_2167567_SNP [dm3] 3R_6341845_SNP [dm6]	T	C	2.503e^-5	0.837	UPSTREAM CG17917 DOWNSTREAM Osi20 INTERGENIC
3L	18363406	3L_18363406_SNP [dm3] 3L_18370306_SNP [dm6]	T	G	2.545e^-5	0.837	INTERGENIC
2R	13121386	2R_13121386_SNP [dm3] 2R_17233881_SNP [dm6]	T	C	2.715e^-5	0.844	INTRON mbl
3L	13188344	3L_13188344_SNP [dm3] 3L_13195244_SNP [dm6]	G	A	2.758e^-5	0.844	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14342251	3R_14342251_SNP [dm3] 3R_18516529_SNP [dm6]	C	T	2.806e^-5	0.844	INTRON fru	TF binding site BDTNP1_TFBS_twi
3L	15528636	3L_15528636_DEL [dm3] 3L_15535536_DEL [dm6]	CA	C	2.888e^-5	0.844	UTR_5_PRIME CrebA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	3820434	3R_3820434_SNP [dm3] 3R_7994712_SNP [dm6]	T	C	2.903e^-5	0.844	INTRON CG2781
2L	900008	2L_900008_SNP [dm3] 2L_900008_SNP [dm6]	T	C	2.945e^-5	0.844	SYNONYMOUS_CODING Lsp1beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8109757	2R_8109757_SNP [dm3] 2R_12222252_SNP [dm6]	A	C	3.024e^-5	0.844	INTERGENIC
X	921614	X_921614_DEL [dm3] X_1027581_DEL [dm6]	CTC	C	3.027e^-5	0.844	UPSTREAM CG32814 & 1 other DOWNSTREAM CDC45L INTRON su_w[a]_ & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8890223	2L_8890223_SNP [dm3] 2L_8890223_SNP [dm6]	G	A	3.037e^-5	0.844	INTERGENIC
2R	8113034	2R_8113034_DEL [dm3] 2R_12225529_DEL [dm6]	TGCGTAAA	T	3.054e^-5	0.844	INTRON CG8854
3L	15540175	3L_15540175_SNP [dm3] 3L_15547075_SNP [dm6]	C	G	3.097e^-5	0.844	INTRON CrebA
2R	10091864	2R_10091864_SNP [dm3] 2R_14204359_SNP [dm6]	A	T	3.114e^-5	0.844	INTRON Sox15	regulatory region REDfly_CRMs
3L	13188602	3L_13188602_SNP [dm3] 3L_13195502_SNP [dm6]	A	G	3.150e^-5	0.844	INTERGENIC
X	19252922	X_19252922_SNP [dm3] X_19358889_SNP [dm6]	T	G	3.306e^-5	0.872	INTRON kek5	TF binding site BDTNP1_TFBS_dl
X	12207397	X_12207397_INS [dm3] X_12313364_INS [dm6]	C	CGCCAAGTC	3.476e^-5	0.872	INTRON Ten-a
2L	13665220	2L_13665220_SNP [dm3] 2L_13665220_SNP [dm6]	G	A	3.488e^-5	0.872	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8109780	2R_8109780_SNP [dm3] 2R_12222275_SNP [dm6]	G	A	3.510e^-5	0.872	INTERGENIC
X	4277123	X_4277123_SNP [dm3] X_4383090_SNP [dm6]	C	T	3.514e^-5	0.872	DOWNSTREAM CG12688 INTERGENIC
2R	20508703	2R_20508703_SNP [dm3] 2R_24621180_SNP [dm6]	C	A	3.544e^-5	0.872	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2R	8087999	2R_8087999_SNP [dm3] 2R_12200494_SNP [dm6]	G	A	3.616e^-5	0.872	SYNONYMOUS_CODING RpS11 UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	8113161	2R_8113161_SNP [dm3] 2R_12225656_SNP [dm6]	T	A	3.639e^-5	0.872	INTRON CG8854
2R	19533110	2R_19533110_SNP [dm3] 2R_23645587_SNP [dm6]	G	A	3.746e^-5	0.872	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	19252948	X_19252948_SNP [dm3] X_19358915_SNP [dm6]	T	A	3.831e^-5	0.872	INTRON kek5	TF binding site BDTNP1_TFBS_dl
2R	8092915	2R_8092915_SNP [dm3] 2R_12205410_SNP [dm6]	C	G	3.831e^-5	0.872	UPSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3704104	X_3704104_SNP [dm3] X_3810071_SNP [dm6]	C	T	3.879e^-5	0.872	SYNONYMOUS_CODING fd3F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18208348	3L_18208348_SNP [dm3] 3L_18215248_SNP [dm6]	T	C	3.956e^-5	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	5051058	2L_5051058_DEL [dm3] 2L_5051058_DEL [dm6]	CATC	C	4.070e^-5	0.872	UTR_5_PRIME CG9121 UPSTREAM CG9121 DOWNSTREAM eIF-3p40
3L	16558392	3L_16558392_SNP [dm3] 3L_16565292_SNP [dm6]	A	T	4.154e^-5	0.872	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	9849005	2R_9849005_DEL [dm3] 2R_13961500_DEL [dm6]	ATATTTACAAA...	A	4.158e^-5	0.872	INTRON Cp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18358308	3R_18358308_SNP [dm3] 3R_22532586_SNP [dm6]	T	C	4.276e^-5	0.872	UTR_3_PRIME CG5326 UPSTREAM CG33093	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2787480	3L_2787480_SNP [dm3] 3L_2787480_SNP [dm6]	C	T	4.508e^-5	0.872	UTR_3_PRIME CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9394919	2R_9394919_SNP [dm3] 2R_13507414_SNP [dm6]	A	T	4.521e^-5	0.872	UPSTREAM EfTuM INTRON mip120	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10595399	3R_10595399_SNP [dm3] 3R_14769677_SNP [dm6]	T	G	4.534e^-5	0.872	INTRON jvl
2R	8102309	2R_8102309_INS [dm3] 2R_12214804_INS [dm6]	G	GAGTG	4.636e^-5	0.872	DOWNSTREAM CG13171 INTERGENIC
3R	14342310	3R_14342310_SNP [dm3] 3R_18516588_SNP [dm6]	C	A	4.645e^-5	0.872	INTRON fru	TF binding site BDTNP1_TFBS_twi
X	16640847	X_16640847_SNP [dm3] X_16746814_SNP [dm6]	T	G	4.681e^-5	0.872	UPSTREAM CG9634 INTRON CG9634
3R	20351934	3R_20351934_SNP [dm3] 3R_24526212_SNP [dm6]	C	A	4.720e^-5	0.872	INTRON CG13618
3L	9421668	3L_9421668_SNP [dm3] 3L_9428568_SNP [dm6]	G	A	4.764e^-5	0.872	UTR_3_PRIME Shc DOWNSTREAM RpS17 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16039477	2R_16039477_SNP [dm3] 2R_20151972_SNP [dm6]	G	A	4.801e^-5	0.872	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18622620	2L_18622620_SNP [dm3] 2L_18622620_SNP [dm6]	C	T	4.829e^-5	0.872	INTRON MESR3
3R	25354357	3R_25354357_SNP [dm3] 3R_29528635_SNP [dm6]	G	A	4.906e^-5	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10707670	2L_10707670_SNP [dm3] 2L_10707670_SNP [dm6]	G	A	4.938e^-5	0.872	INTRON Lip2
2R	8084501	2R_8084501_SNP [dm3] 2R_12196996_SNP [dm6]	T	C	4.995e^-5	0.872	INTRON CG8858	TF binding site mE1_TFBS_cad
3L	8811821	3L_8811821_SNP [dm3] 3L_8818721_SNP [dm6]	G	T	5.003e^-5	0.872	INTERGENIC
2L	13666494	2L_13666494_SNP [dm3] 2L_13666494_SNP [dm6]	A	G	5.016e^-5	0.872	INTRON CG18507	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1921000	2R_1921000_DEL [dm3] 2R_6033495_DEL [dm6]	ATATGTTCTTAATGCGTATA...	A	5.025e^-5	0.872	INTRON SCAP	TF binding site BDTNP1_TFBS_dl
3L	612107	3L_612107_SNP [dm3] 3L_612107_SNP [dm6]	C	A	5.037e^-5	0.872	INTERGENIC
2R	16039494	2R_16039494_SNP [dm3] 2R_20151989_SNP [dm6]	T	C	5.056e^-5	0.872	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8112615	2R_8112615_SNP [dm3] 2R_12225110_SNP [dm6]	T	C	5.076e^-5	0.872	NON_SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8106248	2R_8106248_INS [dm3] 2R_12218743_INS [dm6]	G	GATG	5.098e^-5	0.872	INTERGENIC
2R	8977845	2R_8977845_SNP [dm3] 2R_13090340_SNP [dm6]	T	C	5.132e^-5	0.872	INTERGENIC
3R	3864818	3R_3864818_SNP [dm3] 3R_8039096_SNP [dm6]	T	A	5.165e^-5	0.872	EXON CR44936	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
3R	26936801	3R_26936801_SNP [dm3] 3R_31111079_SNP [dm6]	G	A	5.282e^-5	0.872	INTERGENIC
3L	12327350	3L_12327350_SNP [dm3] 3L_12334250_SNP [dm6]	G	A	5.356e^-5	0.872	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo
3R	12472952	3R_12472952_SNP [dm3] 3R_16647230_SNP [dm6]	T	C	5.423e^-5	0.872	UPSTREAM Cctgamma & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3R	14342198	3R_14342198_SNP [dm3] 3R_18516476_SNP [dm6]	A	T	5.537e^-5	0.872	INTRON fru	TF binding site BDTNP1_TFBS_twi
2R	14646077	2R_14646077_SNP [dm3] 2R_18758572_SNP [dm6]	C	T	5.608e^-5	0.872	SPLICE_SITE_REGION Jabba SYNONYMOUS_CODING Jabba	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9409339	2L_9409339_SNP [dm3] 2L_9409339_SNP [dm6]	G	A	5.618e^-5	0.872	INTRON Shawl
2L	18511162	2L_18511162_SNP [dm3] 2L_18511162_SNP [dm6]	A	C	5.623e^-5	0.872	INTRON CG10178
2L	9319702	2L_9319702_SNP [dm3] 2L_9319702_SNP [dm6]	A	G	5.626e^-5	0.872	INTERGENIC
3R	8606171	3R_8606171_SNP [dm3] 3R_12780449_SNP [dm6]	T	A	5.700e^-5	0.872	INTRON beat-Vc
2R	14598896	2R_14598896_SNP [dm3] 2R_18711391_SNP [dm6]	A	T	5.700e^-5	0.872	UPSTREAM CG15087 EXON pncr016:2R
2R	8112658	2R_8112658_SNP [dm3] 2R_12225153_SNP [dm6]	G	A	5.757e^-5	0.872	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
2L	9409309	2L_9409309_INS [dm3] 2L_9409309_INS [dm6]	C	TG	5.790e^-5	0.872	INTRON Shawl
2R	8090564	2R_8090564_SNP [dm3] 2R_12203059_SNP [dm6]	G	A	5.846e^-5	0.872	INTERGENIC
3R	3820805	3R_3820805_SNP [dm3] 3R_7995083_SNP [dm6]	T	C	5.924e^-5	0.872	INTRON CG2781
2L	13665284	2L_13665284_SNP [dm3] 2L_13665284_SNP [dm6]	C	T	5.988e^-5	0.872	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	13307988	X_13307988_SNP [dm3] X_13413955_SNP [dm6]	A	G	6.173e^-5	0.872	SYNONYMOUS_CODING Set2 UPSTREAM CG1998	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13305585	2L_13305585_SNP [dm3] 2L_13305585_SNP [dm6]	A	G	6.279e^-5	0.872	SYNONYMOUS_CODING CG43778 UTR_5_PRIME CG16825 UPSTREAM CG16825 DOWNSTREAM CG43779	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14649714	2R_14649714_SNP [dm3] 2R_18762209_SNP [dm6]	C	T	6.300e^-5	0.872	UTR_5_PRIME Mctp
3L	1401951	3L_1401951_SNP [dm3] 3L_1401951_SNP [dm6]	A	T	6.321e^-5	0.872	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13683188	3L_13683188_SNP [dm3] 3L_13690088_SNP [dm6]	G	A	6.384e^-5	0.872	INTRON bru-3
2R	8115568	2R_8115568_SNP [dm3] 2R_12228063_SNP [dm6]	T	C	6.457e^-5	0.872	INTRON CG8854
3R	3902206	3R_3902206_SNP [dm3] 3R_8076484_SNP [dm6]	G	C	6.542e^-5	0.872	DOWNSTREAM snoRNA:Me18S-G423 INTRON mAChR-B
3L	2367629	3L_2367629_SNP [dm3] 3L_2367629_SNP [dm6]	A	T	6.593e^-5	0.872	DOWNSTREAM CG1317 INTERGENIC
3L	11016768	3L_11016768_SNP [dm3] 3L_11023668_SNP [dm6]	G	T	6.663e^-5	0.872	NON_SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12609977	3L_12609977_SNP [dm3] 3L_12616877_SNP [dm6]	G	A	6.833e^-5	0.872	SYNONYMOUS_CODING caup	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6539726	3R_6539726_INS [dm3] 3R_10714004_INS [dm6]	T	TC	6.928e^-5	0.872	UPSTREAM CG4073 INTERGENIC
3R	15010610	3R_15010610_SNP [dm3] 3R_19184888_SNP [dm6]	A	C	6.960e^-5	0.872	INTRON CG31475
3R	15010611	3R_15010611_SNP [dm3] 3R_19184889_SNP [dm6]	T	A	6.960e^-5	0.872	INTRON CG31475
3R	25354487	3R_25354487_SNP [dm3] 3R_29528765_SNP [dm6]	T	C	6.986e^-5	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15134330	3R_15134330_SNP [dm3] 3R_19308608_SNP [dm6]	A	G	7.029e^-5	0.872	INTRON Dl	TF binding site mE1_TFBS_HSA
3R	12347621	3R_12347621_SNP [dm3] 3R_16521899_SNP [dm6]	C	T	7.041e^-5	0.872	INTRON CG42342
2R	8113423	2R_8113423_SNP [dm3] 2R_12225918_SNP [dm6]	A	C	7.098e^-5	0.872	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	14342262	3R_14342262_SNP [dm3] 3R_18516540_SNP [dm6]	A	C	7.195e^-5	0.872	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	9409426	2L_9409426_SNP [dm3] 2L_9409426_SNP [dm6]	A	G	7.231e^-5	0.872	INTRON Shawl
3L	13188260	3L_13188260_SNP [dm3] 3L_13195160_SNP [dm6]	C	T	7.319e^-5	0.872	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8124472	2R_8124472_SNP [dm3] 2R_12236967_SNP [dm6]	A	G	7.383e^-5	0.872	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17239211	2R_17239211_SNP [dm3] 2R_21351706_SNP [dm6]	A	G	7.393e^-5	0.872	INTERGENIC
3R	14342184	3R_14342184_SNP [dm3] 3R_18516462_SNP [dm6]	C	T	7.489e^-5	0.872	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	9409362	2L_9409362_SNP [dm3] 2L_9409362_SNP [dm6]	C	A	7.509e^-5	0.872	INTRON Shawl
3R	12474447	3R_12474447_SNP [dm3] 3R_16648725_SNP [dm6]	G	T	7.516e^-5	0.872	SYNONYMOUS_CODING Cctgamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18692747	2L_18692747_SNP [dm3] 2L_18692747_SNP [dm6]	C	T	7.518e^-5	0.872	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25613985	3R_25613985_SNP [dm3] 3R_29788263_SNP [dm6]	C	T	7.532e^-5	0.872	UPSTREAM kay INTRON kay
3L	11596975	3L_11596975_SNP [dm3] 3L_11603875_SNP [dm6]	T	C	7.569e^-5	0.872	SYNONYMOUS_CODING CG7368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4227979	2R_4227979_SNP [dm3] 2R_8340474_SNP [dm6]	G	A	7.579e^-5	0.872	INTRON pdm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	6783739	2L_6783739_SNP [dm3] 2L_6783739_SNP [dm6]	C	A	7.644e^-5	0.872	INTRON nrv1
2L	15402020	2L_15402020_SNP [dm3] 2L_15402020_SNP [dm6]	A	G	7.681e^-5	0.872	INTERGENIC
3R	17525861	3R_17525861_SNP [dm3] 3R_21700139_SNP [dm6]	A	C	7.689e^-5	0.872	INTRON CG31176
2R	9888819	2R_9888819_SNP [dm3] 2R_14001314_SNP [dm6]	C	T	7.727e^-5	0.872	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8115659	2R_8115659_SNP [dm3] 2R_12228154_SNP [dm6]	T	G	7.748e^-5	0.872	INTRON CG8854
3L	10472520	3L_10472520_INS [dm3] 3L_10479420_INS [dm6]	T	TAT	7.818e^-5	0.872	INTERGENIC
2R	8110146	2R_8110146_SNP [dm3] 2R_12222641_SNP [dm6]	G	T	7.823e^-5	0.872	INTERGENIC
X	15327555	X_15327555_SNP [dm3] X_15433522_SNP [dm6]	G	A	7.828e^-5	0.872	INTRON Cngl	transposable element FlyBase
3L	4688651	3L_4688651_SNP [dm3] 3L_4688651_SNP [dm6]	A	G	7.859e^-5	0.872	SYNONYMOUS_CODING CG7514 DOWNSTREAM CG18418
2L	13291778	2L_13291778_SNP [dm3] 2L_13291778_SNP [dm6]	T	A	7.888e^-5	0.872	INTRON CG31729
3R	11942300	3R_11942300_SNP [dm3] 3R_16116578_SNP [dm6]	G	A	7.893e^-5	0.872	INTRON Sb
2R	8113500	2R_8113500_SNP [dm3] 2R_12225995_SNP [dm6]	T	C	7.919e^-5	0.872	NON_SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	12822916	2R_12822916_SNP [dm3] 2R_16935411_SNP [dm6]	G	A	8.046e^-5	0.872	INTRON Pkc53E
3L	394241	3L_394241_SNP [dm3] 3L_394241_SNP [dm6]	C	G	8.076e^-5	0.872	UPSTREAM CR45378 EXON CR43969
2L	12418465	2L_12418465_SNP [dm3] 2L_12418465_SNP [dm6]	C	T	8.083e^-5	0.872	INTRON vir-1
2R	16039478	2R_16039478_SNP [dm3] 2R_20151973_SNP [dm6]	C	T	8.119e^-5	0.872	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13731072	3L_13731072_SNP [dm3] 3L_13737972_SNP [dm6]	T	C	8.220e^-5	0.872	INTRON bru-3
2L	15728926	2L_15728926_SNP [dm3] 2L_15728926_SNP [dm6]	G	A	8.298e^-5	0.872	SYNONYMOUS_CODING CycE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13665279	2L_13665279_SNP [dm3] 2L_13665279_SNP [dm6]	G	T	8.314e^-5	0.872	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	18919952	X_18919952_INS [dm3] X_19025919_INS [dm6]	A	AGGA	8.323e^-5	0.872	UTR_3_PRIME CG43759
2L	1627623	2L_1627623_SNP [dm3] 2L_1627623_SNP [dm6]	T	C	8.445e^-5	0.872	INTERGENIC
2L	14001452	2L_14001452_SNP [dm3] 2L_14001452_SNP [dm6]	T	A	8.552e^-5	0.872	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	15402110	2L_15402110_SNP [dm3] 2L_15402110_SNP [dm6]	C	A	8.581e^-5	0.872	INTERGENIC
2R	8109756	2R_8109756_SNP [dm3] 2R_12222251_SNP [dm6]	A	G	8.631e^-5	0.872	INTERGENIC
3R	25354447	3R_25354447_SNP [dm3] 3R_29528725_SNP [dm6]	A	G	8.667e^-5	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16132174	2L_16132174_SNP [dm3] 2L_16132174_SNP [dm6]	T	C	8.677e^-5	0.872	INTERGENIC
3L	10472859	3L_10472859_SNP [dm3] 3L_10479759_SNP [dm6]	C	T	8.706e^-5	0.872	INTERGENIC
3L	427026	3L_427026_SNP [dm3] 3L_427026_SNP [dm6]	G	A	8.711e^-5	0.872	INTERGENIC
3R	22231059	3R_22231059_SNP [dm3] 3R_26405337_SNP [dm6]	T	C	8.754e^-5	0.872	INTERGENIC
X	5920643	X_5920643_SNP [dm3] X_6026610_SNP [dm6]	T	C	8.788e^-5	0.872	INTERGENIC	TF binding site mE1_TFBS_HSA
X	17393810	X_17393810_SNP [dm3] X_17499777_SNP [dm6]	G	A	8.793e^-5	0.872	INTRON CG43658
3R	12474401	3R_12474401_SNP [dm3] 3R_16648679_SNP [dm6]	T	A	8.809e^-5	0.872	INTRON Cctgamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21922309	3R_21922309_SNP [dm3] 3R_26096587_SNP [dm6]	G	A	8.843e^-5	0.872	INTRON dys	TF binding site mE1_TFBS_cnc
2R	8124452	2R_8124452_SNP [dm3] 2R_12236947_SNP [dm6]	T	G	8.861e^-5	0.872	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13188650	3L_13188650_SNP [dm3] 3L_13195550_SNP [dm6]	T	A	8.882e^-5	0.872	INTERGENIC
2R	10687923	2R_10687923_SNP [dm3] 2R_14800418_SNP [dm6]	G	A	9.001e^-5	0.872	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	5902982	2L_5902982_SNP [dm3] 2L_5902982_SNP [dm6]	C	T	9.083e^-5	0.872	DOWNSTREAM CG9021 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6205856	2L_6205856_SNP [dm3] 2L_6205856_SNP [dm6]	T	G	9.125e^-5	0.872	INTRON CG34380	TF binding site BDTNP1_TFBS_da
3L	17773437	3L_17773437_SNP [dm3] 3L_17780337_SNP [dm6]	A	C	9.309e^-5	0.872	INTERGENIC
2L	900123	2L_900123_SNP [dm3] 2L_900123_SNP [dm6]	A	T	9.309e^-5	0.872	NON_SYNONYMOUS_CODING Lsp1beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	612113	3L_612113_SNP [dm3] 3L_612113_SNP [dm6]	A	C	9.389e^-5	0.872	INTERGENIC
2R	3517149	2R_3517149_SNP [dm3] 2R_7629644_SNP [dm6]	C	A	9.393e^-5	0.872	INTRON CG43340
3L	9251694	3L_9251694_SNP [dm3] 3L_9258594_SNP [dm6]	T	G	9.416e^-5	0.872	INTRON GluRIB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14175470	3R_14175470_SNP [dm3] 3R_18349748_SNP [dm6]	C	T	9.435e^-5	0.872	INTRON CG15803
3R	14342229	3R_14342229_SNP [dm3] 3R_18516507_SNP [dm6]	A	G	9.472e^-5	0.872	INTRON fru	TF binding site BDTNP1_TFBS_twi
3L	13188580	3L_13188580_SNP [dm3] 3L_13195480_SNP [dm6]	A	C	9.492e^-5	0.872	INTERGENIC
2R	6365027	2R_6365027_SNP [dm3] 2R_10477522_SNP [dm6]	G	A	9.499e^-5	0.872	UPSTREAM CR45134 INTRON whd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	22977973	3R_22977973_SNP [dm3] 3R_27152251_SNP [dm6]	C	T	9.534e^-5	0.872	INTRON Men-b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	8096002	2R_8096002_SNP [dm3] 2R_12208497_SNP [dm6]	C	A	9.537e^-5	0.872	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2L	1080227	2L_1080227_SNP [dm3] 2L_1080227_SNP [dm6]	C	T	9.544e^-5	0.872	SYNONYMOUS_CODING ast UPSTREAM Atg4a	TF binding site mE1_TFBS_sens
2L	13218214	2L_13218214_SNP [dm3] 2L_13218214_SNP [dm6]	G	T	9.577e^-5	0.872	SYNONYMOUS_CODING CG9426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15528279	3L_15528279_INS [dm3] 3L_15535179_INS [dm6]	T	TA	9.601e^-5	0.872	UPSTREAM CrebA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	18889792	X_18889792_SNP [dm3] X_18995759_SNP [dm6]	A	G	9.668e^-5	0.872	INTRON CG43759
3R	8094455	3R_8094455_SNP [dm3] 3R_12268733_SNP [dm6]	C	A	9.673e^-5	0.872	UPSTREAM CR44039 INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6137320	X_6137320_SNP [dm3] X_6243287_SNP [dm6]	T	G	9.703e^-5	0.872	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17787396	3L_17787396_SNP [dm3] 3L_17794296_SNP [dm6]	C	T	9.717e^-5	0.872	SYNONYMOUS_CODING CG42816
2L	15102065	2L_15102065_SNP [dm3] 2L_15102065_SNP [dm6]	T	A	1.005e^-4	0.896	INTERGENIC
2L	18678593	2L_18678593_SNP [dm3] 2L_18678593_SNP [dm6]	T	G	1.015e^-4	0.896	UPSTREAM CG31751 INTRON CG31751
2L	4009682	2L_4009682_SNP [dm3] 2L_4009682_SNP [dm6]	G	A	1.016e^-4	0.896	DOWNSTREAM CG43774 INTERGENIC
X	6137319	X_6137319_SNP [dm3] X_6243286_SNP [dm6]	T	G	1.017e^-4	0.896	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14329290	X_14329290_SNP [dm3] X_14435257_SNP [dm6]	T	C	1.036e^-4	0.908	INTRON dpr8
3R	21223474	3R_21223474_SNP [dm3] 3R_25397752_SNP [dm6]	G	T	1.053e^-4	0.916	DOWNSTREAM Muc96D INTRON Fur1
2L	16388013	2L_16388013_INS [dm3] 2L_16388013_INS [dm6]	G	GG	1.059e^-4	0.916	INTERGENIC
2R	8123177	2R_8123177_SNP [dm3] 2R_12235672_SNP [dm6]	C	T	1.065e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12327338	3L_12327338_SNP [dm3] 3L_12334238_SNP [dm6]	C	T	1.066e^-4	0.916	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo
3L	1281832	3L_1281832_SNP [dm3] 3L_1281832_SNP [dm6]	C	T	1.069e^-4	0.916	INTRON CG32333
3L	15527871	3L_15527871_SNP [dm3] 3L_15534771_SNP [dm6]	T	C	1.078e^-4	0.916	UPSTREAM CrebA INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	14598954	2R_14598954_SNP [dm3] 2R_18711449_SNP [dm6]	T	C	1.080e^-4	0.916	UPSTREAM CG15087 EXON pncr016:2R
2L	7075694	2L_7075694_MNP [dm3] 2L_7075694_MNP [dm6]	TGG	CTA	1.084e^-4	0.916	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3818902	3R_3818902_SNP [dm3] 3R_7993180_SNP [dm6]	A	T	1.100e^-4	0.921	INTRON CG2781
2R	8096106	2R_8096106_SNP [dm3] 2R_12208601_SNP [dm6]	A	G	1.100e^-4	0.921	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23445213	3R_23445213_SNP [dm3] 3R_27619491_SNP [dm6]	C	T	1.110e^-4	0.925	INTRON Tusp
2R	8084634	2R_8084634_SNP [dm3] 2R_12197129_SNP [dm6]	A	C	1.126e^-4	0.935	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
2R	8147573	2R_8147573_SNP [dm3] 2R_12260068_SNP [dm6]	A	C	1.143e^-4	0.944	UTR_5_PRIME Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	8893427	2L_8893427_SNP [dm3] 2L_8893427_SNP [dm6]	A	C	1.150e^-4	0.946	INTERGENIC
X	14236706	X_14236706_SNP [dm3] X_14342673_SNP [dm6]	T	A	1.171e^-4	0.948	INTRON dpr8
3R	20243269	3R_20243269_SNP [dm3] 3R_24417547_SNP [dm6]	A	T	1.173e^-4	0.948	INTRON nAChRalpha1
X	4448607	X_4448607_SNP [dm3] X_4554574_SNP [dm6]	C	A	1.175e^-4	0.948	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15956755	3L_15956755_SNP [dm3] 3L_15963655_SNP [dm6]	C	T	1.176e^-4	0.948	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7696878	2L_7696878_SNP [dm3] 2L_7696878_SNP [dm6]	T	A	1.177e^-4	0.948	INTRON Tep2
2R	8112845	2R_8112845_SNP [dm3] 2R_12225340_SNP [dm6]	T	C	1.196e^-4	0.959	INTRON CG8854
X	11566147	X_11566147_SNP [dm3] X_11672114_SNP [dm6]	C	T	1.219e^-4	0.971	INTRON Ptp10D
2L	13881208	2L_13881208_SNP [dm3] 2L_13881208_SNP [dm6]	C	A	1.227e^-4	0.971	INTRON CenG1A
2L	4085728	2L_4085728_SNP [dm3] 2L_4085728_SNP [dm6]	G	T	1.232e^-4	0.971	UPSTREAM snoRNA:Me28S-C437 INTRON ed
2L	18688863	2L_18688863_DEL [dm3] 2L_18688863_DEL [dm6]	TTTGCTGCG	C	1.243e^-4	0.971	UPSTREAM CG10336 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	25354436	3R_25354436_SNP [dm3] 3R_29528714_SNP [dm6]	G	A	1.246e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8091180	2R_8091180_SNP [dm3] 2R_12203675_SNP [dm6]	C	A	1.248e^-4	0.971	INTERGENIC
2R	8108409	2R_8108409_SNP [dm3] 2R_12220904_SNP [dm6]	C	T	1.250e^-4	0.971	INTERGENIC
X	5388492	X_5388492_SNP [dm3] X_5494459_SNP [dm6]	C	T	1.258e^-4	0.971	NON_SYNONYMOUS_CODING frma DOWNSTREAM SPR
3L	612104	3L_612104_SNP [dm3] 3L_612104_SNP [dm6]	T	C	1.258e^-4	0.971	INTERGENIC
2R	8096130	2R_8096130_SNP [dm3] 2R_12208625_SNP [dm6]	G	A	1.265e^-4	0.972	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	3142477	X_3142477_SNP [dm3] X_3248444_SNP [dm6]	G	T	1.276e^-4	0.972	DOWNSTREAM Pig1 INTRON dnc
2R	8078685	2R_8078685_SNP [dm3] 2R_12191180_SNP [dm6]	G	A	1.284e^-4	0.972	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2R	8123170	2R_8123170_SNP [dm3] 2R_12235665_SNP [dm6]	G	A	1.289e^-4	0.972	INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	10989556	3L_10989556_SNP [dm3] 3L_10996456_SNP [dm6]	C	T	1.290e^-4	0.972	INTRON klu
2L	8179246	2L_8179246_SNP [dm3] 2L_8179246_SNP [dm6]	C	T	1.290e^-4	0.972	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8024238	2R_8024238_SNP [dm3] 2R_12136733_SNP [dm6]	C	A	1.298e^-4	0.974	INTERGENIC
2R	8092581	2R_8092581_SNP [dm3] 2R_12205076_SNP [dm6]	C	T	1.310e^-4	0.975	INTERGENIC
3R	13939998	3R_13939998_SNP [dm3] 3R_18114276_SNP [dm6]	C	T	1.313e^-4	0.975	INTRON sr
3L	9931932	3L_9931932_SNP [dm3] 3L_9938832_SNP [dm6]	C	T	1.315e^-4	0.975	INTRON CG34356
X	3132453	X_3132453_SNP [dm3] X_3238420_SNP [dm6]	A	C	1.335e^-4	0.982	INTRON dnc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2943046	2L_2943046_SNP [dm3] 2L_2943046_SNP [dm6]	T	A	1.337e^-4	0.982	INTRON lilli
3R	15002181	3R_15002181_SNP [dm3] 3R_19176459_SNP [dm6]	T	G	1.340e^-4	0.982	UPSTREAM CG14282 INTERGENIC
2L	18791684	2L_18791684_SNP [dm3] 2L_18791684_SNP [dm6]	G	A	1.364e^-4	0.988	INTRON ham	transposable element FlyBase
2R	18072684	2R_18072684_SNP [dm3] 2R_22185179_SNP [dm6]	T	C	1.369e^-4	0.988	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	15090483	2L_15090483_SNP [dm3] 2L_15090483_SNP [dm6]	T	C	1.373e^-4	0.988	INTRON CG15270
2L	16089733	2L_16089733_SNP [dm3] 2L_16089733_SNP [dm6]	C	T	1.399e^-4	0.988	INTERGENIC
2L	13666509	2L_13666509_SNP [dm3] 2L_13666509_SNP [dm6]	A	T	1.408e^-4	0.988	INTRON CG18507	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25354450	3R_25354450_SNP [dm3] 3R_29528728_SNP [dm6]	T	A	1.430e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15721110	2R_15721110_SNP [dm3] 2R_19833605_SNP [dm6]	A	G	1.430e^-4	0.988	DOWNSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20309378	X_20309378_SNP [dm3] X_20438351_SNP [dm6]	A	G	1.437e^-4	0.988	INTRON CG1695
2L	7852194	2L_7852194_SNP [dm3] 2L_7852194_SNP [dm6]	A	T	1.439e^-4	0.988	INTRON CG14535
2L	18919280	2L_18919280_SNP [dm3] 2L_18919280_SNP [dm6]	C	T	1.454e^-4	0.988	INTRON ssp3
3L	3046522	3L_3046522_SNP [dm3] 3L_3046522_SNP [dm6]	A	G	1.466e^-4	0.988	UPSTREAM Sk2 INTRON scramb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	10017113	2L_10017113_SNP [dm3] 2L_10017113_SNP [dm6]	C	A	1.470e^-4	0.988	NON_SYNONYMOUS_CODING CG13131
3R	25364450	3R_25364450_SNP [dm3] 3R_29538728_SNP [dm6]	G	A	1.475e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	11777835	3R_11777835_DEL [dm3] 3R_15952113_DEL [dm6]	CAG	C	1.490e^-4	0.988	INTRON Sap47	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	2950584	2L_2950584_SNP [dm3] 2L_2950584_SNP [dm6]	G	A	1.498e^-4	0.988	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5825067	2L_5825067_SNP [dm3] 2L_5825067_SNP [dm6]	T	C	1.498e^-4	0.988	UTR_5_PRIME TrissinR
2L	8891974	2L_8891974_SNP [dm3] 2L_8891974_SNP [dm6]	T	A	1.501e^-4	0.988	UTR_3_PRIME CG42713 DOWNSTREAM CG42713
2L	16232387	2L_16232387_SNP [dm3] 2L_16232387_SNP [dm6]	T	G	1.501e^-4	0.988	INTRON CG42817	TF binding site BDTNP1_TFBS_slp1
2R	8157022	2R_8157022_SNP [dm3] 2R_12269517_SNP [dm6]	T	C	1.515e^-4	0.988	INTRON Cam
3L	1401948	3L_1401948_SNP [dm3] 3L_1401948_SNP [dm6]	C	A	1.519e^-4	0.988	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20351935	3R_20351935_SNP [dm3] 3R_24526213_SNP [dm6]	A	G	1.522e^-4	0.988	INTRON CG13618
3R	25340795	3R_25340795_SNP [dm3] 3R_29515073_SNP [dm6]	G	T	1.522e^-4	0.988	UPSTREAM CG2014 INTERGENIC
3R	7765178	3R_7765178_SNP [dm3] 3R_11939456_SNP [dm6]	T	A	1.523e^-4	0.988	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi
2L	15090473	2L_15090473_SNP [dm3] 2L_15090473_SNP [dm6]	G	A	1.526e^-4	0.988	INTRON CG15270
2L	10635003	2L_10635003_SNP [dm3] 2L_10635003_SNP [dm6]	A	G	1.529e^-4	0.988	INTRON CG7329
2R	10687680	2R_10687680_SNP [dm3] 2R_14800175_SNP [dm6]	G	A	1.537e^-4	0.988	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8110134	2R_8110134_SNP [dm3] 2R_12222629_SNP [dm6]	T	G	1.537e^-4	0.988	INTERGENIC
2R	8118778	2R_8118778_SNP [dm3] 2R_12231273_SNP [dm6]	A	T	1.538e^-4	0.988	INTERGENIC
2R	9960743	2R_9960743_SNP [dm3] 2R_14073238_SNP [dm6]	C	A	1.552e^-4	0.988	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	20243267	3R_20243267_SNP [dm3] 3R_24417545_SNP [dm6]	T	G	1.553e^-4	0.988	INTRON nAChRalpha1
2R	10085803	2R_10085803_DEL [dm3] 2R_14198298_DEL [dm6]	TGACAATATACGT...	T	1.562e^-4	0.988	UTR_3_PRIME CG30069 DOWNSTREAM VGAT
3L	10469365	3L_10469365_SNP [dm3] 3L_10476265_SNP [dm6]	A	C	1.586e^-4	0.988	INTERGENIC
3R	13308134	3R_13308134_SNP [dm3] 3R_17482412_SNP [dm6]	C	T	1.591e^-4	0.988	DOWNSTREAM Dscam3 INTRON Dscam3
3R	20243221	3R_20243221_SNP [dm3] 3R_24417499_SNP [dm6]	C	T	1.592e^-4	0.988	INTRON nAChRalpha1
3R	25398371	3R_25398371_SNP [dm3] 3R_29572649_SNP [dm6]	A	T	1.597e^-4	0.988	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14598666	2R_14598666_SNP [dm3] 2R_18711161_SNP [dm6]	T	A	1.605e^-4	0.988	UPSTREAM pncr016:2R & 1 other INTERGENIC
X	6952627	X_6952627_SNP [dm3] X_7058594_SNP [dm6]	T	C	1.606e^-4	0.988	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	8118773	2R_8118773_SNP [dm3] 2R_12231268_SNP [dm6]	C	T	1.637e^-4	0.988	INTERGENIC
3R	12014785	3R_12014785_SNP [dm3] 3R_16189063_SNP [dm6]	T	A	1.641e^-4	0.988	INTRON sra
3L	10472466	3L_10472466_SNP [dm3] 3L_10479366_SNP [dm6]	G	A	1.646e^-4	0.988	INTERGENIC
2R	8121885	2R_8121885_SNP [dm3] 2R_12234380_SNP [dm6]	G	A	1.653e^-4	0.988	EXON CR44313
2R	8086863	2R_8086863_INS [dm3] 2R_12199358_INS [dm6]	A	AGA	1.654e^-4	0.988	UTR_3_PRIME RpS11 UPSTREAM CG8858 & 1 other DOWNSTREAM RpS11 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	15327496	X_15327496_INS [dm3] X_15433463_INS [dm6]	G	GCGCTGCGTCTATG...	1.658e^-4	0.988	INTRON Cngl	transposable element FlyBase
2R	2536690	2R_2536690_SNP [dm3] 2R_6649185_SNP [dm6]	C	T	1.664e^-4	0.988	START_GAINED debcl UTR_5_PRIME debcl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2537223	2R_2537223_INS [dm3] 2R_6649718_INS [dm6]	T	TG	1.664e^-4	0.988	INTRON debcl	TF binding site mE1_TFBS_cad
2R	2537228	2R_2537228_INS [dm3] 2R_6649723_INS [dm6]	G	TCAAAAA	1.664e^-4	0.988	INTRON debcl	TF binding site mE1_TFBS_cad
X	6011487	X_6011487_SNP [dm3] X_6117454_SNP [dm6]	A	T	1.693e^-4	0.988	INTRON Ca-alpha1T
2R	14885709	2R_14885709_SNP [dm3] 2R_18998204_SNP [dm6]	C	T	1.703e^-4	0.988	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1921166	2R_1921166_SNP [dm3] 2R_6033661_SNP [dm6]	A	G	1.704e^-4	0.988	INTRON SCAP
2L	4277456	2L_4277456_SNP [dm3] 2L_4277456_SNP [dm6]	A	T	1.712e^-4	0.988	DOWNSTREAM Art2 INTERGENIC
2R	8122459	2R_8122459_SNP [dm3] 2R_12234954_SNP [dm6]	G	A	1.717e^-4	0.988	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	11172918	3R_11172918_SNP [dm3] 3R_15347196_SNP [dm6]	C	A	1.717e^-4	0.988	UPSTREAM CG42726 & 1 other INTRON CG31301	TF binding site BDTNP1_TFBS_dl
X	3901068	X_3901068_SNP [dm3] X_4007035_SNP [dm6]	C	T	1.726e^-4	0.988	INTERGENIC
2L	13218182	2L_13218182_SNP [dm3] 2L_13218182_SNP [dm6]	G	A	1.728e^-4	0.988	SYNONYMOUS_CODING CG9426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8090765	2R_8090765_SNP [dm3] 2R_12203260_SNP [dm6]	C	T	1.732e^-4	0.988	INTERGENIC
2R	9892999	2R_9892999_SNP [dm3] 2R_14005494_SNP [dm6]	A	G	1.739e^-4	0.988	DOWNSTREAM mir-4978 INTRON mam
2L	5083835	2L_5083835_SNP [dm3] 2L_5083835_SNP [dm6]	G	A	1.740e^-4	0.988	INTRON pgant5
2R	8090555	2R_8090555_DEL [dm3] 2R_12203050_DEL [dm6]	AAAA	A	1.747e^-4	0.988	INTERGENIC
2L	5321959	2L_5321959_SNP [dm3] 2L_5321959_SNP [dm6]	A	G	1.747e^-4	0.988	SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10227637	3R_10227637_SNP [dm3] 3R_14401915_SNP [dm6]	A	T	1.747e^-4	0.988	INTRON cv-c
X	2607929	X_2607929_SNP [dm3] X_2713896_SNP [dm6]	A	G	1.754e^-4	0.988	UTR_5_PRIME CG2685 UPSTREAM CG2694	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11002850	3L_11002850_SNP [dm3] 3L_11009750_SNP [dm6]	C	T	1.761e^-4	0.988	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	18630975	2R_18630975_SNP [dm3] 2R_22743470_SNP [dm6]	G	T	1.778e^-4	0.988	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12204364	X_12204364_SNP [dm3] X_12310331_SNP [dm6]	A	T	1.780e^-4	0.988	INTRON Ten-a
2R	9889542	2R_9889542_SNP [dm3] 2R_14002037_SNP [dm6]	T	C	1.793e^-4	0.988	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	12471363	3R_12471363_SNP [dm3] 3R_16645641_SNP [dm6]	T	A	1.797e^-4	0.988	NON_SYNONYMOUS_CODING CG10324 DOWNSTREAM CG10326
2R	8113100	2R_8113100_SNP [dm3] 2R_12225595_SNP [dm6]	C	A	1.803e^-4	0.988	INTRON CG8854
2R	8121919	2R_8121919_SNP [dm3] 2R_12234414_SNP [dm6]	G	C	1.803e^-4	0.988	EXON CR44313
2R	2534517	2R_2534517_SNP [dm3] 2R_6647012_SNP [dm6]	G	A	1.807e^-4	0.988	INTERGENIC
X	6136787	X_6136787_SNP [dm3] X_6242754_SNP [dm6]	A	G	1.811e^-4	0.988	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11038163	3L_11038163_SNP [dm3] 3L_11045063_SNP [dm6]	T	C	1.817e^-4	0.988	INTRON CG43693	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	9931594	3L_9931594_SNP [dm3] 3L_9938494_SNP [dm6]	C	T	1.823e^-4	0.988	INTRON CG34356
2L	16132208	2L_16132208_SNP [dm3] 2L_16132208_SNP [dm6]	A	G	1.835e^-4	0.988	INTERGENIC
2L	15102673	2L_15102673_SNP [dm3] 2L_15102673_SNP [dm6]	T	C	1.836e^-4	0.988	INTERGENIC
3L	11550337	3L_11550337_SNP [dm3] 3L_11557237_SNP [dm6]	T	A	1.840e^-4	0.988	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1059532	2L_1059532_SNP [dm3] 2L_1059532_SNP [dm6]	T	C	1.847e^-4	0.988	INTRON S
3R	13908939	3R_13908939_SNP [dm3] 3R_18083217_SNP [dm6]	C	T	1.851e^-4	0.988	DOWNSTREAM CG14317 INTERGENIC
X	3876572	X_3876572_SNP [dm3] X_3982539_SNP [dm6]	G	A	1.852e^-4	0.988	INTERGENIC
2R	8096148	2R_8096148_SNP [dm3] 2R_12208643_SNP [dm6]	C	T	1.853e^-4	0.988	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14443337	2L_14443337_SNP [dm3] 2L_14443337_SNP [dm6]	G	C	1.856e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
X	15120882	X_15120882_SNP [dm3] X_15226849_SNP [dm6]	G	A	1.863e^-4	0.988	DOWNSTREAM CR44430 INTERGENIC
2L	14003230	2L_14003230_SNP [dm3] 2L_14003230_SNP [dm6]	T	C	1.864e^-4	0.988	INTERGENIC
X	6137389	X_6137389_SNP [dm3] X_6243356_SNP [dm6]	G	A	1.866e^-4	0.988	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8893286	2L_8893286_SNP [dm3] 2L_8893286_SNP [dm6]	G	A	1.876e^-4	0.988	INTERGENIC
2L	2944859	2L_2944859_SNP [dm3] 2L_2944859_SNP [dm6]	C	T	1.878e^-4	0.988	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
2R	8078974	2R_8078974_SNP [dm3] 2R_12191469_SNP [dm6]	G	C	1.888e^-4	0.988	NON_SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
X	20402013	X_20402013_SNP [dm3] X_20530986_SNP [dm6]	A	G	1.902e^-4	0.988	INTERGENIC
2R	8106274	2R_8106274_SNP [dm3] 2R_12218769_SNP [dm6]	C	T	1.902e^-4	0.988	INTERGENIC
2R	8118777	2R_8118777_SNP [dm3] 2R_12231272_SNP [dm6]	C	G	1.908e^-4	0.988	INTERGENIC
3R	8153237	3R_8153237_SNP [dm3] 3R_12327515_SNP [dm6]	C	T	1.909e^-4	0.988	EXON CR45584
3L	13727694	3L_13727694_SNP [dm3] 3L_13734594_SNP [dm6]	C	G	1.920e^-4	0.988	INTRON bru-3
2R	10074949	2R_10074949_SNP [dm3] 2R_14187444_SNP [dm6]	A	G	1.928e^-4	0.988	INTRON CG30069
2R	15721088	2R_15721088_SNP [dm3] 2R_19833583_SNP [dm6]	C	A	1.937e^-4	0.988	DOWNSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11002847	3L_11002847_SNP [dm3] 3L_11009747_SNP [dm6]	T	C	1.941e^-4	0.988	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	612070	3L_612070_SNP [dm3] 3L_612070_SNP [dm6]	C	T	1.945e^-4	0.988	INTERGENIC
3L	3020274	3L_3020274_SNP [dm3] 3L_3020274_SNP [dm6]	G	T	1.951e^-4	0.988	INTERGENIC
2L	8179360	2L_8179360_SNP [dm3] 2L_8179360_SNP [dm6]	C	A	1.953e^-4	0.988	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15327586	X_15327586_SNP [dm3] X_15433553_SNP [dm6]	C	G	1.955e^-4	0.988	INTRON Cngl	transposable element FlyBase
3R	10122707	3R_10122707_DEL [dm3] 3R_14296985_DEL [dm6]	AACTACAGAAA...	A	1.958e^-4	0.988	INTRON CG12207
2R	7119454	2R_7119454_SNP [dm3] 2R_11231949_SNP [dm6]	T	C	1.961e^-4	0.988	INTRON metro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	14724495	2L_14724495_SNP [dm3] 2L_14724495_SNP [dm6]	C	T	1.967e^-4	0.988	DOWNSTREAM CG42685 INTERGENIC
3R	15318453	3R_15318453_SNP [dm3] 3R_19492731_SNP [dm6]	C	T	1.971e^-4	0.988	INTRON Dys
3R	20351927	3R_20351927_SNP [dm3] 3R_24526205_SNP [dm6]	G	C	1.979e^-4	0.988	INTRON CG13618
2L	8891623	2L_8891623_SNP [dm3] 2L_8891623_SNP [dm6]	A	G	1.984e^-4	0.988	INTRON CG42713
2R	8139251	2R_8139251_SNP [dm3] 2R_12251746_SNP [dm6]	G	C	2.012e^-4	0.988	INTERGENIC
3L	18555689	3L_18555689_SNP [dm3] 3L_18562589_SNP [dm6]	G	C	2.020e^-4	0.988	INTRON AstC-R1
2R	8116039	2R_8116039_DEL [dm3] 2R_12228534_DEL [dm6]	TC	T	2.022e^-4	0.988	INTRON CG8854
2R	8087300	2R_8087300_SNP [dm3] 2R_12199795_SNP [dm6]	G	T	2.028e^-4	0.988	UPSTREAM CG8858 & 2 others INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	12140467	2L_12140467_SNP [dm3] 2L_12140467_SNP [dm6]	T	C	2.030e^-4	0.988	DOWNSTREAM Gr33a INTERGENIC
2L	9409329	2L_9409329_SNP [dm3] 2L_9409329_SNP [dm6]	T	A	2.033e^-4	0.988	INTRON Shawl
2R	8022183	2R_8022183_SNP [dm3] 2R_12134678_SNP [dm6]	C	T	2.036e^-4	0.988	INTERGENIC
X	11566154	X_11566154_INS [dm3] X_11672121_INS [dm6]	A	ATGTT	2.040e^-4	0.988	INTRON Ptp10D
3L	1746377	3L_1746377_SNP [dm3] 3L_1746377_SNP [dm6]	A	G	2.043e^-4	0.988	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	3891396	2L_3891396_SNP [dm3] 2L_3891396_SNP [dm6]	C	T	2.049e^-4	0.988	INTRON capu
2R	8117275	2R_8117275_SNP [dm3] 2R_12229770_SNP [dm6]	C	T	2.054e^-4	0.988	UPSTREAM CG8854 INTERGENIC
2R	8119474	2R_8119474_SNP [dm3] 2R_12231969_SNP [dm6]	G	C	2.055e^-4	0.988	INTERGENIC
2R	8380083	2R_8380083_SNP [dm3] 2R_12492578_SNP [dm6]	C	A	2.055e^-4	0.988	INTRON fdl
2L	15090489	2L_15090489_SNP [dm3] 2L_15090489_SNP [dm6]	T	A	2.057e^-4	0.988	INTRON CG15270
2R	9892970	2R_9892970_SNP [dm3] 2R_14005465_SNP [dm6]	A	G	2.068e^-4	0.988	DOWNSTREAM mir-4978 INTRON mam
2L	15102133	2L_15102133_SNP [dm3] 2L_15102133_SNP [dm6]	C	A	2.074e^-4	0.988	INTERGENIC
2L	8894437	2L_8894437_DEL [dm3] 2L_8894437_DEL [dm6]	AAT	CG	2.077e^-4	0.988	INTERGENIC
3L	1675376	3L_1675376_SNP [dm3] 3L_1675376_SNP [dm6]	C	T	2.083e^-4	0.988	INTRON CG7991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20431732	X_20431732_SNP [dm3] X_20560705_SNP [dm6]	A	C	2.088e^-4	0.988	INTRON RunxB
2L	1456797	2L_1456797_SNP [dm3] 2L_1456797_SNP [dm6]	T	A	2.096e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18662695	3R_18662695_SNP [dm3] 3R_22836973_SNP [dm6]	A	T	2.105e^-4	0.988	INTERGENIC
X	4277309	X_4277309_SNP [dm3] X_4383276_SNP [dm6]	G	A	2.116e^-4	0.988	DOWNSTREAM CG12688 INTERGENIC
X	2607676	X_2607676_SNP [dm3] X_2713643_SNP [dm6]	A	G	2.121e^-4	0.988	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8122440	2R_8122440_SNP [dm3] 2R_12234935_SNP [dm6]	A	T	2.121e^-4	0.988	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8090624	2R_8090624_SNP [dm3] 2R_12203119_SNP [dm6]	G	A	2.122e^-4	0.988	INTERGENIC
2R	8112797	2R_8112797_SNP [dm3] 2R_12225292_SNP [dm6]	T	A	2.124e^-4	0.988	INTRON CG8854
2L	15381117	2L_15381117_DEL [dm3] 2L_15381117_DEL [dm6]	AG	A	2.137e^-4	0.988	INTERGENIC
2L	3164583	2L_3164583_SNP [dm3] 2L_3164583_SNP [dm6]	G	A	2.138e^-4	0.988	INTRON Hydr2
3R	8671180	3R_8671180_SNP [dm3] 3R_12845458_SNP [dm6]	G	A	2.162e^-4	0.988	INTRON beat-Va
3R	12473827	3R_12473827_SNP [dm3] 3R_16648105_SNP [dm6]	C	A	2.167e^-4	0.988	INTRON Cctgamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8112843	2R_8112843_SNP [dm3] 2R_12225338_SNP [dm6]	T	C	2.173e^-4	0.988	INTRON CG8854
3L	9752556	3L_9752556_SNP [dm3] 3L_9759456_SNP [dm6]	T	C	2.183e^-4	0.988	INTRON CG42268
2L	7075702	2L_7075702_SNP [dm3] 2L_7075702_SNP [dm6]	G	A	2.186e^-4	0.988	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5526062	3L_5526062_SNP [dm3] 3L_5532962_SNP [dm6]	G	A	2.198e^-4	0.988	INTERGENIC
2L	7513910	2L_7513910_SNP [dm3] 2L_7513910_SNP [dm6]	G	A	2.201e^-4	0.988	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	8080226	2R_8080226_SNP [dm3] 2R_12192721_SNP [dm6]	C	G	2.204e^-4	0.988	NON_SYNONYMOUS_CODING CG8858 DOWNSTREAM Cyp6t3	TF binding site mE1_TFBS_cad
2R	8145003	2R_8145003_SNP [dm3] 2R_12257498_SNP [dm6]	T	G	2.204e^-4	0.988	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
X	14694624	X_14694624_SNP [dm3] X_14800591_SNP [dm6]	T	G	2.209e^-4	0.988	NON_SYNONYMOUS_CODING rut
3L	9922769	3L_9922769_DEL [dm3] 3L_9929669_DEL [dm6]	TT	T	2.231e^-4	0.988	INTRON CG34356
3R	18627798	3R_18627798_SNP [dm3] 3R_22802076_SNP [dm6]	A	G	2.235e^-4	0.988	INTERGENIC
3L	18541759	3L_18541759_SNP [dm3] 3L_18548659_SNP [dm6]	T	C	2.239e^-4	0.988	INTERGENIC
3L	15528030	3L_15528030_DEL [dm3] 3L_15534930_DEL [dm6]	AC	A	2.249e^-4	0.988	UPSTREAM CrebA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9017587	3L_9017587_SNP [dm3] 3L_9024487_SNP [dm6]	C	T	2.265e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15319642	X_15319642_SNP [dm3] X_15425609_SNP [dm6]	G	C	2.269e^-4	0.988	INTRON Cngl
3R	26092528	3R_26092528_SNP [dm3] 3R_30266806_SNP [dm6]	T	C	2.272e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	10535485	3L_10535485_SNP [dm3] 3L_10542385_SNP [dm6]	T	C	2.274e^-4	0.988	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
2L	5079942	2L_5079942_SNP [dm3] 2L_5079942_SNP [dm6]	G	A	2.280e^-4	0.988	INTRON pgant5	TF binding site BDTNP1_TFBS_dl
2L	14001438	2L_14001438_SNP [dm3] 2L_14001438_SNP [dm6]	C	A	2.286e^-4	0.988	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	5140610	3L_5140610_SNP [dm3] 3L_5147510_SNP [dm6]	T	C	2.291e^-4	0.988	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10535406	3L_10535406_SNP [dm3] 3L_10542306_SNP [dm6]	C	T	2.295e^-4	0.988	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
2L	8141932	2L_8141932_SNP [dm3] 2L_8141932_SNP [dm6]	T	G	2.309e^-4	0.988	UPSTREAM mir-4984 INTRON CG8552
2R	8090744	2R_8090744_SNP [dm3] 2R_12203239_SNP [dm6]	A	G	2.311e^-4	0.988	INTERGENIC
3R	17065433	3R_17065433_SNP [dm3] 3R_21239711_SNP [dm6]	C	T	2.313e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
X	865569	X_865569_SNP [dm3] X_971536_SNP [dm6]	A	T	2.317e^-4	0.988	INTERGENIC
3L	17028084	3L_17028084_SNP [dm3] 3L_17034984_SNP [dm6]	A	T	2.324e^-4	0.988	UPSTREAM beg INTERGENIC
3R	10056170	3R_10056170_SNP [dm3] 3R_14230448_SNP [dm6]	G	C	2.337e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3256814	2R_3256814_SNP [dm3] 2R_7369309_SNP [dm6]	T	A	2.341e^-4	0.988	INTRON Dscam1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10007525	X_10007525_SNP [dm3] X_10113492_SNP [dm6]	A	G	2.347e^-4	0.988	DOWNSTREAM CR44894 INTRON RhoU	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8092572	2R_8092572_SNP [dm3] 2R_12205067_SNP [dm6]	C	T	2.350e^-4	0.988	INTERGENIC
2R	8109648	2R_8109648_SNP [dm3] 2R_12222143_SNP [dm6]	T	C	2.352e^-4	0.988	INTERGENIC
X	6136486	X_6136486_SNP [dm3] X_6242453_SNP [dm6]	G	A	2.358e^-4	0.988	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	3132581	X_3132581_SNP [dm3] X_3238548_SNP [dm6]	G	A	2.365e^-4	0.988	INTRON dnc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8851153	3L_8851153_DEL [dm3] 3L_8858053_DEL [dm6]	TGACT	T	2.370e^-4	0.988	INTRON dally
2R	20188161	2R_20188161_SNP [dm3] 2R_24300638_SNP [dm6]	C	G	2.377e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6085880	2L_6085880_SNP [dm3] 2L_6085880_SNP [dm6]	T	A	2.378e^-4	0.988	INTRON Kr-h1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3487443	2L_3487443_SNP [dm3] 2L_3487443_SNP [dm6]	C	A	2.391e^-4	0.988	INTRON CG15414
2R	8090760	2R_8090760_SNP [dm3] 2R_12203255_SNP [dm6]	C	T	2.398e^-4	0.988	INTERGENIC
2L	6747545	2L_6747545_SNP [dm3] 2L_6747545_SNP [dm6]	C	T	2.398e^-4	0.988	NON_SYNONYMOUS_CODING CG44271 INTRON CG11221
2R	8095966	2R_8095966_SNP [dm3] 2R_12208461_SNP [dm6]	G	A	2.404e^-4	0.988	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3R	7741199	3R_7741199_SNP [dm3] 3R_11915477_SNP [dm6]	G	A	2.406e^-4	0.988	INTRON Cad87A
X	19256558	X_19256558_SNP [dm3] X_19362525_SNP [dm6]	C	T	2.406e^-4	0.988	INTRON kek5	TF binding site BDTNP1_TFBS_dl
3L	5283855	3L_5283855_DEL [dm3] 3L_5290755_DEL [dm6]	AGCGCTTTCAA...	A	2.406e^-4	0.988	INTERGENIC
3R	3867870	3R_3867870_SNP [dm3] 3R_8042148_SNP [dm6]	G	T	2.408e^-4	0.988	DOWNSTREAM CG43060 INTRON CG43060
2R	8090739	2R_8090739_SNP [dm3] 2R_12203234_SNP [dm6]	G	A	2.415e^-4	0.988	INTERGENIC
3L	8584952	3L_8584952_SNP [dm3] 3L_8591852_SNP [dm6]	C	T	2.422e^-4	0.988	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10551957	3L_10551957_SNP [dm3] 3L_10558857_SNP [dm6]	A	T	2.426e^-4	0.988	NON_SYNONYMOUS_CODING CG6527 INTRON A2bp1
3L	17807673	3L_17807673_SNP [dm3] 3L_17814573_SNP [dm6]	C	T	2.433e^-4	0.988	UPSTREAM cln3 DOWNSTREAM Ir75a INTERGENIC
X	3876023	X_3876023_SNP [dm3] X_3981990_SNP [dm6]	G	A	2.434e^-4	0.988	INTERGENIC
2R	13160485	2R_13160485_SNP [dm3] 2R_17272980_SNP [dm6]	T	C	2.451e^-4	0.988	INTRON mbl
2R	3907173	2R_3907173_SNP [dm3] 2R_8019668_SNP [dm6]	T	C	2.455e^-4	0.988	EXON CR45267	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15528034	3L_15528034_SNP [dm3] 3L_15534934_SNP [dm6]	T	A	2.457e^-4	0.988	UPSTREAM CrebA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18678100	2L_18678100_SNP [dm3] 2L_18678100_SNP [dm6]	A	G	2.458e^-4	0.988	UPSTREAM CG31751 INTRON CG31751	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11037149	3L_11037149_SNP [dm3] 3L_11044049_SNP [dm6]	A	T	2.458e^-4	0.988	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
3R	10549537	3R_10549537_SNP [dm3] 3R_14723815_SNP [dm6]	G	A	2.466e^-4	0.988	UTR_5_PRIME kibra DOWNSTREAM CG7530	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	2732205	2R_2732205_SNP [dm3] 2R_6844700_SNP [dm6]	A	G	2.470e^-4	0.988	INTERGENIC
2R	17759033	2R_17759033_SNP [dm3] 2R_21871528_SNP [dm6]	T	G	2.475e^-4	0.988	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	10418873	3L_10418873_SNP [dm3] 3L_10425773_SNP [dm6]	A	C	2.477e^-4	0.988	INTERGENIC
2L	10903725	2L_10903725_SNP [dm3] 2L_10903725_SNP [dm6]	C	A	2.480e^-4	0.988	DOWNSTREAM CR45724 INTERGENIC
3R	9870858	3R_9870858_SNP [dm3] 3R_14045136_SNP [dm6]	C	T	2.481e^-4	0.988	UPSTREAM tRNA:S2b:88A INTERGENIC
2R	9312323	2R_9312323_INS [dm3] 2R_13424818_INS [dm6]	C	CTC	2.487e^-4	0.988	UPSTREAM CG42321 INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16240929	2L_16240929_SNP [dm3] 2L_16240929_SNP [dm6]	A	T	2.488e^-4	0.988	UTR_3_PRIME CG42817 DOWNSTREAM CG42817
3L	13950633	3L_13950633_SNP [dm3] 3L_13957533_SNP [dm6]	T	C	2.494e^-4	0.988	INTRON CG32137	TF binding site mE1_TFBS_inv
2R	1921061	2R_1921061_SNP [dm3] 2R_6033556_SNP [dm6]	T	G	2.507e^-4	0.988	INTRON SCAP	TF binding site BDTNP1_TFBS_dl
2R	8125446	2R_8125446_SNP [dm3] 2R_12237941_SNP [dm6]	T	A	2.515e^-4	0.988	INTERGENIC
X	18697979	X_18697979_SNP [dm3] X_18803946_SNP [dm6]	T	C	2.518e^-4	0.988	DOWNSTREAM CR44841 INTRON Pk17E	TF binding site BDTNP1_TFBS_twi
2R	14805308	2R_14805308_SNP [dm3] 2R_18917803_SNP [dm6]	C	T	2.520e^-4	0.988	INTRON sano
3R	25661407	3R_25661407_SNP [dm3] 3R_29835685_SNP [dm6]	T	C	2.523e^-4	0.988	UTR_3_PRIME CG42592 UPSTREAM CG15510 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1113741	2R_1113741_SNP [dm3] 2R_5226236_SNP [dm6]	A	G	2.528e^-4	0.988	INTRON Nipped-A
2L	4231851	2L_4231851_SNP [dm3] 2L_4231851_SNP [dm6]	C	T	2.536e^-4	0.988	INTERGENIC
X	19370386	X_19370386_SNP [dm3] X_19476353_SNP [dm6]	A	G	2.540e^-4	0.988	DOWNSTREAM CG12200 INTRON CG32533	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8122493	2R_8122493_INS [dm3] 2R_12234988_INS [dm6]	A	ATTAGTTA	2.543e^-4	0.988	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_kn
3R	15196863	3R_15196863_SNP [dm3] 3R_19371141_SNP [dm6]	C	T	2.559e^-4	0.988	SYNONYMOUS_CODING Ino80
3R	25354438	3R_25354438_SNP [dm3] 3R_29528716_SNP [dm6]	C	G	2.560e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4666097	3L_4666097_SNP [dm3] 3L_4666097_SNP [dm6]	A	T	2.563e^-4	0.988	NON_SYNONYMOUS_CODING CG32236 INTRON axo
X	11578971	X_11578971_SNP [dm3] X_11684938_SNP [dm6]	A	T	2.570e^-4	0.988	INTRON bif
X	5365142	X_5365142_SNP [dm3] X_5471109_SNP [dm6]	T	C	2.574e^-4	0.988	INTRON SPR
2L	8903575	2L_8903575_SNP [dm3] 2L_8903575_SNP [dm6]	T	C	2.576e^-4	0.988	INTRON CG34398
2R	8111212	2R_8111212_SNP [dm3] 2R_12223707_SNP [dm6]	A	C	2.579e^-4	0.988	DOWNSTREAM CG8854 INTERGENIC
2R	8118775	2R_8118775_SNP [dm3] 2R_12231270_SNP [dm6]	T	C	2.587e^-4	0.988	INTERGENIC
2L	18754607	2L_18754607_SNP [dm3] 2L_18754607_SNP [dm6]	C	T	2.594e^-4	0.988	INTERGENIC
3L	18388482	3L_18388482_SNP [dm3] 3L_18395382_SNP [dm6]	A	T	2.597e^-4	0.988	INTERGENIC
3R	26893060	3R_26893060_SNP [dm3] 3R_31067338_SNP [dm6]	G	A	2.599e^-4	0.988	INTRON Sox100B
3R	26828519	3R_26828519_SNP [dm3] 3R_31002797_SNP [dm6]	G	A	2.602e^-4	0.988	INTRON 5-HT7
3R	25352269	3R_25352269_SNP [dm3] 3R_29526547_SNP [dm6]	G	T	2.603e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12318048	3L_12318048_SNP [dm3] 3L_12324948_SNP [dm6]	C	T	2.606e^-4	0.988	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1908355	2L_1908355_SNP [dm3] 2L_1908355_SNP [dm6]	T	C	2.614e^-4	0.988	INTRON CG7337
2R	14619672	2R_14619672_SNP [dm3] 2R_18732167_SNP [dm6]	A	G	2.622e^-4	0.988	INTRON Hs3st-A
2R	14643414	2R_14643414_SNP [dm3] 2R_18755909_SNP [dm6]	A	T	2.632e^-4	0.988	INTRON Cyp12b2
2R	15721120	2R_15721120_SNP [dm3] 2R_19833615_SNP [dm6]	G	A	2.632e^-4	0.988	DOWNSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9133048	3R_9133048_INS [dm3] 3R_13307326_INS [dm6]	C	CC	2.636e^-4	0.988	INTRON CG32473
2R	12163788	2R_12163788_SNP [dm3] 2R_16276283_SNP [dm6]	C	A	2.641e^-4	0.988	NON_SYNONYMOUS_CODING CG33017
3R	22397335	3R_22397335_SNP [dm3] 3R_26571613_SNP [dm6]	G	C	2.651e^-4	0.988	INTRON scrib
3R	25658304	3R_25658304_SNP [dm3] 3R_29832582_SNP [dm6]	C	T	2.657e^-4	0.988	INTRON Atg16
2L	15402208	2L_15402208_SNP [dm3] 2L_15402208_SNP [dm6]	G	A	2.660e^-4	0.988	INTERGENIC
3R	22237088	3R_22237088_SNP [dm3] 3R_26411366_SNP [dm6]	T	A	2.660e^-4	0.988	INTERGENIC
2L	18678508	2L_18678508_SNP [dm3] 2L_18678508_SNP [dm6]	A	T	2.661e^-4	0.988	UPSTREAM CG31751 INTRON CG31751
2L	6001191	2L_6001191_SNP [dm3] 2L_6001191_SNP [dm6]	C	T	2.661e^-4	0.988	SYNONYMOUS_CODING Tsp26A INTRON Tsp26A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8101436	2R_8101436_SNP [dm3] 2R_12213931_SNP [dm6]	A	T	2.663e^-4	0.988	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9416416	3L_9416416_SNP [dm3] 3L_9423316_SNP [dm6]	C	T	2.664e^-4	0.988	UTR_5_PRIME aay INTRON CG3967	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22463170	3R_22463170_SNP [dm3] 3R_26637448_SNP [dm6]	T	G	2.674e^-4	0.988	SYNONYMOUS_CODING TwdlS
3L	12164576	3L_12164576_SNP [dm3] 3L_12171476_SNP [dm6]	T	C	2.679e^-4	0.988	INTRON Rh7
2R	8096236	2R_8096236_SNP [dm3] 2R_12208731_SNP [dm6]	A	C	2.693e^-4	0.988	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10535409	3L_10535409_SNP [dm3] 3L_10542309_SNP [dm6]	A	T	2.699e^-4	0.988	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3R	15010618	3R_15010618_SNP [dm3] 3R_19184896_SNP [dm6]	T	G	2.704e^-4	0.988	INTRON CG31475
3R	24259075	3R_24259075_SNP [dm3] 3R_28433353_SNP [dm6]	A	G	2.712e^-4	0.988	INTRON beat-VI
3R	10590323	3R_10590323_SNP [dm3] 3R_14764601_SNP [dm6]	C	A	2.717e^-4	0.988	INTRON jvl
2R	8148358	2R_8148358_SNP [dm3] 2R_12260853_SNP [dm6]	T	A	2.732e^-4	0.988	DOWNSTREAM CR43900 INTRON Cam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	11296589	3L_11296589_SNP [dm3] 3L_11303489_SNP [dm6]	T	C	2.733e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25398409	3R_25398409_SNP [dm3] 3R_29572687_SNP [dm6]	C	T	2.733e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14175458	3R_14175458_SNP [dm3] 3R_18349736_SNP [dm6]	T	G	2.744e^-4	0.988	INTRON CG15803
2L	14001442	2L_14001442_SNP [dm3] 2L_14001442_SNP [dm6]	C	T	2.744e^-4	0.988	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	12144016	2R_12144016_SNP [dm3] 2R_16256511_SNP [dm6]	T	C	2.753e^-4	0.988	INTRON CngA
3R	9727121	3R_9727121_SNP [dm3] 3R_13901399_SNP [dm6]	C	T	2.775e^-4	0.988	UPSTREAM ems INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	3746762	3R_3746762_SNP [dm3] 3R_7921040_SNP [dm6]	C	T	2.778e^-4	0.988	SYNONYMOUS_CODING lds UPSTREAM CG10445 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10707747	2L_10707747_SNP [dm3] 2L_10707747_SNP [dm6]	A	C	2.778e^-4	0.988	INTRON Lip2
3L	12927213	3L_12927213_SNP [dm3] 3L_12934113_SNP [dm6]	T	G	2.781e^-4	0.988	INTERGENIC
2R	6368920	2R_6368920_SNP [dm3] 2R_10481415_SNP [dm6]	G	A	2.790e^-4	0.988	SYNONYMOUS_CODING CG17765 DOWNSTREAM lola & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	10679099	2L_10679099_SNP [dm3] 2L_10679099_SNP [dm6]	C	A	2.798e^-4	0.988	NON_SYNONYMOUS_CODING CG17104
3L	18431613	3L_18431613_SNP [dm3] 3L_18438513_SNP [dm6]	A	T	2.799e^-4	0.988	DOWNSTREAM skl INTERGENIC
3R	6318598	3R_6318598_SNP [dm3] 3R_10492876_SNP [dm6]	C	T	2.800e^-4	0.988	INTERGENIC
3R	19369116	3R_19369116_SNP [dm3] 3R_23543394_SNP [dm6]	A	G	2.809e^-4	0.988	INTERGENIC
3R	25354020	3R_25354020_SNP [dm3] 3R_29528298_SNP [dm6]	A	T	2.817e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_inv
3R	8606213	3R_8606213_SNP [dm3] 3R_12780491_SNP [dm6]	T	A	2.820e^-4	0.988	INTRON beat-Vc
3L	13728165	3L_13728165_SNP [dm3] 3L_13735065_SNP [dm6]	C	T	2.826e^-4	0.988	INTRON bru-3
2L	15819726	2L_15819726_SNP [dm3] 2L_15819726_SNP [dm6]	C	A	2.838e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_run
3R	21223329	3R_21223329_SNP [dm3] 3R_25397607_SNP [dm6]	T	G	2.840e^-4	0.988	DOWNSTREAM Muc96D INTRON Fur1
2R	9412293	2R_9412293_SNP [dm3] 2R_13524788_SNP [dm6]	T	C	2.855e^-4	0.988	UPSTREAM CG13332 INTRON Vmat
2R	8125673	2R_8125673_SNP [dm3] 2R_12238168_SNP [dm6]	A	T	2.861e^-4	0.988	INTERGENIC
2R	8125681	2R_8125681_SNP [dm3] 2R_12238176_SNP [dm6]	A	G	2.861e^-4	0.988	INTERGENIC
2L	13291768	2L_13291768_SNP [dm3] 2L_13291768_SNP [dm6]	G	C	2.866e^-4	0.988	INTRON CG31729
X	3876568	X_3876568_SNP [dm3] X_3982535_SNP [dm6]	A	T	2.869e^-4	0.988	INTERGENIC
3L	10456434	3L_10456434_SNP [dm3] 3L_10463334_SNP [dm6]	G	A	2.872e^-4	0.988	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	3085866	X_3085866_SNP [dm3] X_3191833_SNP [dm6]	A	G	2.876e^-4	0.988	INTRON dnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	12422010	X_12422010_SNP [dm3] X_12527977_SNP [dm6]	C	T	2.893e^-4	0.988	INTRON CG43921
3L	1745942	3L_1745942_SNP [dm3] 3L_1745942_SNP [dm6]	T	A	2.895e^-4	0.988	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Kr
2L	15933381	2L_15933381_SNP [dm3] 2L_15933381_SNP [dm6]	C	A	2.896e^-4	0.988	INTRON beat-Ib
3L	5282533	3L_5282533_SNP [dm3] 3L_5289433_SNP [dm6]	T	A	2.901e^-4	0.988	INTERGENIC
2L	4753753	2L_4753753_SNP [dm3] 2L_4753753_SNP [dm6]	A	T	2.903e^-4	0.988	INTRON CG15630
2L	8506317	2L_8506317_SNP [dm3] 2L_8506317_SNP [dm6]	G	T	2.906e^-4	0.988	INTRON Dh31
2R	7436171	2R_7436171_SNP [dm3] 2R_11548666_SNP [dm6]	G	C	2.907e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4907412	2L_4907412_SNP [dm3] 2L_4907412_SNP [dm6]	G	T	2.908e^-4	0.988	UPSTREAM CG2837 INTERGENIC
3R	25274985	3R_25274985_SNP [dm3] 3R_29449263_SNP [dm6]	A	G	2.913e^-4	0.988	INTRON Ptp99A
3L	10456459	3L_10456459_SNP [dm3] 3L_10463359_SNP [dm6]	G	C	2.917e^-4	0.988	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	466135	3R_466135_SNP [dm3] 3R_4640413_SNP [dm6]	C	A	2.926e^-4	0.988	INTRON CG9775	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3046481	3L_3046481_SNP [dm3] 3L_3046481_SNP [dm6]	A	G	2.933e^-4	0.988	UPSTREAM Sk2 INTRON scramb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	8078384	2R_8078384_SNP [dm3] 2R_12190879_SNP [dm6]	C	T	2.942e^-4	0.988	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3L	21159821	3L_21159821_DEL [dm3] 3L_21166721_DEL [dm6]	AG	A	2.944e^-4	0.988	INTRON Ac78C
3L	2028747	3L_2028747_SNP [dm3] 3L_2028747_SNP [dm6]	G	A	2.946e^-4	0.988	DOWNSTREAM CG34259 INTERGENIC
3L	19377491	3L_19377491_SNP [dm3] 3L_19384391_SNP [dm6]	C	T	2.948e^-4	0.988	INTRON CG32206
3L	14192415	3L_14192415_SNP [dm3] 3L_14199315_SNP [dm6]	C	G	2.957e^-4	0.988	INTRON nuf
2R	12169512	2R_12169512_SNP [dm3] 2R_16282007_SNP [dm6]	G	A	2.959e^-4	0.988	SYNONYMOUS_CODING CG7755 DOWNSTREAM CG15705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5262865	X_5262865_SNP [dm3] X_5368832_SNP [dm6]	A	G	2.960e^-4	0.988	INTRON SK
3L	17815507	3L_17815507_SNP [dm3] 3L_17822407_SNP [dm6]	A	T	2.962e^-4	0.988	UPSTREAM Grd INTRON Ir75c
2L	15097321	2L_15097321_SNP [dm3] 2L_15097321_SNP [dm6]	G	C	2.962e^-4	0.988	DOWNSTREAM CG15270 INTERGENIC	TF binding site mE1_TFBS_inv
3L	10456825	3L_10456825_SNP [dm3] 3L_10463725_SNP [dm6]	T	A	2.974e^-4	0.988	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	8606206	3R_8606206_SNP [dm3] 3R_12780484_SNP [dm6]	T	C	2.979e^-4	0.988	INTRON beat-Vc
X	6137091	X_6137091_SNP [dm3] X_6243058_SNP [dm6]	G	A	2.980e^-4	0.988	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22386471	3L_22386471_SNP [dm3] 3L_22393371_SNP [dm6]	C	T	2.981e^-4	0.988	INTRON Ten-m
3L	9843468	3L_9843468_SNP [dm3] 3L_9850368_SNP [dm6]	A	T	2.991e^-4	0.988	INTRON RasGAP1
3L	10324541	3L_10324541_SNP [dm3] 3L_10331441_SNP [dm6]	C	G	2.999e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	6365484	2R_6365484_SNP [dm3] 2R_10477979_SNP [dm6]	A	C	3.000e^-4	0.988	UPSTREAM CR45134 INTRON whd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15010621	3R_15010621_INS [dm3] 3R_19184899_INS [dm6]	T	TATG	3.014e^-4	0.988	INTRON CG31475
2L	5257547	2L_5257547_SNP [dm3] 2L_5257547_SNP [dm6]	G	T	3.018e^-4	0.988	INTRON tkv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1076124	2L_1076124_SNP [dm3] 2L_1076124_SNP [dm6]	A	T	3.020e^-4	0.988	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21131271	X_21131271_SNP [dm3] X_21260244_SNP [dm6]	G	T	3.022e^-4	0.988	INTRON CG32521
2L	8891962	2L_8891962_SNP [dm3] 2L_8891962_SNP [dm6]	G	A	3.032e^-4	0.988	UTR_3_PRIME CG42713 DOWNSTREAM CG42713
X	3106641	X_3106641_SNP [dm3] X_3212608_SNP [dm6]	A	G	3.056e^-4	0.988	INTRON dnc
3R	14342282	3R_14342282_SNP [dm3] 3R_18516560_SNP [dm6]	A	G	3.060e^-4	0.988	INTRON fru	TF binding site BDTNP1_TFBS_twi
2R	14619679	2R_14619679_SNP [dm3] 2R_18732174_SNP [dm6]	G	T	3.062e^-4	0.988	INTRON Hs3st-A
3L	14680000	3L_14680000_SNP [dm3] 3L_14686900_SNP [dm6]	A	G	3.065e^-4	0.988	INTRON ome
3L	18605856	3L_18605856_SNP [dm3] 3L_18612756_SNP [dm6]	G	A	3.074e^-4	0.988	SYNONYMOUS_CODING CG32199 DOWNSTREAM CG32201 INTRON CG4174 & 1 other
2R	6366231	2R_6366231_SNP [dm3] 2R_10478726_SNP [dm6]	T	C	3.083e^-4	0.988	UPSTREAM whd DOWNSTREAM trsn EXON CR45134	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	9538087	2L_9538087_SNP [dm3] 2L_9538087_SNP [dm6]	T	C	3.083e^-4	0.988	SYNONYMOUS_CODING Oatp30B
3R	13379359	3R_13379359_SNP [dm3] 3R_17553637_SNP [dm6]	T	G	3.085e^-4	0.988	INTERGENIC
3R	22231048	3R_22231048_SNP [dm3] 3R_26405326_SNP [dm6]	A	G	3.088e^-4	0.988	INTERGENIC
2R	8120816	2R_8120816_SNP [dm3] 2R_12233311_SNP [dm6]	G	A	3.093e^-4	0.988	DOWNSTREAM CR44313 INTERGENIC
2R	8124458	2R_8124458_SNP [dm3] 2R_12236953_SNP [dm6]	T	C	3.100e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14175484	3R_14175484_SNP [dm3] 3R_18349762_SNP [dm6]	T	C	3.113e^-4	0.988	INTRON CG15803
3L	17953167	3L_17953167_SNP [dm3] 3L_17960067_SNP [dm6]	A	C	3.118e^-4	0.988	INTRON Eip75B
3L	5980830	3L_5980830_SNP [dm3] 3L_5987730_SNP [dm6]	T	A	3.122e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	17259464	3L_17259464_SNP [dm3] 3L_17266364_SNP [dm6]	C	T	3.139e^-4	0.988	INTERGENIC
3R	24840949	3R_24840949_SNP [dm3] 3R_29015227_SNP [dm6]	C	A	3.165e^-4	0.988	INTRON wat
2L	7602694	2L_7602694_SNP [dm3] 2L_7602694_SNP [dm6]	C	G	3.172e^-4	0.988	INTERGENIC
2R	20509245	2R_20509245_SNP [dm3] 2R_24621722_SNP [dm6]	C	A	3.175e^-4	0.988	INTRON CG13594
2R	20509289	2R_20509289_SNP [dm3] 2R_24621766_SNP [dm6]	G	A	3.175e^-4	0.988	INTRON CG13594
2R	20510789	2R_20510789_SNP [dm3] 2R_24623266_SNP [dm6]	G	T	3.175e^-4	0.988	INTRON CG13594
2L	18784309	2L_18784309_SNP [dm3] 2L_18784309_SNP [dm6]	G	T	3.185e^-4	0.988	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	15102674	2L_15102674_DEL [dm3] 2L_15102674_DEL [dm6]	TTCA	T	3.188e^-4	0.988	INTERGENIC
3R	21223070	3R_21223070_SNP [dm3] 3R_25397348_SNP [dm6]	A	C	3.204e^-4	0.988	SYNONYMOUS_CODING Fur1 DOWNSTREAM Muc96D
3L	9419073	3L_9419073_SNP [dm3] 3L_9425973_SNP [dm6]	C	T	3.204e^-4	0.988	INTRON CG3967	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	8115828	2R_8115828_SNP [dm3] 2R_12228323_SNP [dm6]	T	A	3.204e^-4	0.988	INTRON CG8854
3R	22604398	3R_22604398_SNP [dm3] 3R_26778676_SNP [dm6]	C	A	3.206e^-4	0.988	INTERGENIC
3R	8904364	3R_8904364_SNP [dm3] 3R_13078642_SNP [dm6]	A	G	3.212e^-4	0.988	DOWNSTREAM sim INTERGENIC	TF binding site mE1_TFBS_bab1
3L	17817811	3L_17817811_SNP [dm3] 3L_17824711_SNP [dm6]	G	T	3.216e^-4	0.988	INTRON Grd
2L	4047856	2L_4047856_SNP [dm3] 2L_4047856_SNP [dm6]	A	T	3.227e^-4	0.988	INTRON ed
3L	15528171	3L_15528171_SNP [dm3] 3L_15535071_SNP [dm6]	A	T	3.229e^-4	0.988	UPSTREAM CrebA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2367635	3L_2367635_SNP [dm3] 3L_2367635_SNP [dm6]	G	A	3.239e^-4	0.988	DOWNSTREAM CG1317 INTERGENIC
2R	8053478	2R_8053478_SNP [dm3] 2R_12165973_SNP [dm6]	T	C	3.250e^-4	0.988	UPSTREAM CG34232 DOWNSTREAM Oda INTERGENIC
2L	8891624	2L_8891624_SNP [dm3] 2L_8891624_SNP [dm6]	T	A	3.254e^-4	0.988	INTRON CG42713
3R	25354457	3R_25354457_SNP [dm3] 3R_29528735_SNP [dm6]	G	T	3.260e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13088828	3L_13088828_SNP [dm3] 3L_13095728_SNP [dm6]	G	T	3.262e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11550330	3L_11550330_SNP [dm3] 3L_11557230_SNP [dm6]	C	T	3.264e^-4	0.988	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3833432	3R_3833432_SNP [dm3] 3R_8007710_SNP [dm6]	C	T	3.264e^-4	0.988	DOWNSTREAM CG11052 INTRON CG2767
2R	14886112	2R_14886112_SNP [dm3] 2R_18998607_SNP [dm6]	G	T	3.265e^-4	0.988	NON_SYNONYMOUS_CODING tn INTRON tn
2L	15100085	2L_15100085_SNP [dm3] 2L_15100085_SNP [dm6]	C	A	3.282e^-4	0.988	INTERGENIC
2R	8079334	2R_8079334_SNP [dm3] 2R_12191829_SNP [dm6]	A	T	3.300e^-4	0.988	SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
2L	8506313	2L_8506313_SNP [dm3] 2L_8506313_SNP [dm6]	A	T	3.302e^-4	0.988	INTRON Dh31
X	16375273	X_16375273_SNP [dm3] X_16481240_SNP [dm6]	T	A	3.307e^-4	0.988	INTRON para
3L	4731011	3L_4731011_SNP [dm3] 3L_4731011_SNP [dm6]	T	C	3.313e^-4	0.988	INTRON RhoGEF64C
X	6319604	X_6319604_SNP [dm3] X_6425571_SNP [dm6]	A	C	3.324e^-4	0.988	INTRON CG42340
3R	13839308	3R_13839308_SNP [dm3] 3R_18013586_SNP [dm6]	G	T	3.330e^-4	0.988	UTR_3_PRIME cpo	TF binding site mE1_TFBS_cad
3R	25562159	3R_25562159_SNP [dm3] 3R_29736437_SNP [dm6]	C	T	3.333e^-4	0.988	SPLICE_SITE_REGION CG7601 UPSTREAM CG7598 INTRON CG7601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
2R	8086269	2R_8086269_SNP [dm3] 2R_12198764_SNP [dm6]	A	C	3.337e^-4	0.988	DOWNSTREAM RpS11 & 2 others INTRON CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
3L	17879039	3L_17879039_SNP [dm3] 3L_17885939_SNP [dm6]	G	A	3.347e^-4	0.988	UPSTREAM CR42548 DOWNSTREAM CG16775 INTERGENIC
2R	8117911	2R_8117911_SNP [dm3] 2R_12230406_SNP [dm6]	A	C	3.354e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	2385953	X_2385953_SNP [dm3] X_2491920_SNP [dm6]	A	C	3.361e^-4	0.988	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
X	16640660	X_16640660_DEL [dm3] X_16746627_DEL [dm6]	AA	A	3.362e^-4	0.988	UPSTREAM CG9634 INTRON CG9634
2L	14724859	2L_14724859_SNP [dm3] 2L_14724859_SNP [dm6]	C	A	3.365e^-4	0.988	SYNONYMOUS_CODING CG42685
3L	7545997	3L_7545997_SNP [dm3] 3L_7552897_SNP [dm6]	C	T	3.367e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10688785	2R_10688785_SNP [dm3] 2R_14801280_SNP [dm6]	G	A	3.368e^-4	0.988	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	13734565	3L_13734565_INS [dm3] 3L_13741465_INS [dm6]	T	TCAT	3.376e^-4	0.988	INTRON bru-3
X	4071328	X_4071328_DEL [dm3] X_4177295_DEL [dm6]	TT	T	3.379e^-4	0.988	INTRON Fas2	TF binding site mE1_TFBS_HSA
2R	14648938	2R_14648938_SNP [dm3] 2R_18761433_SNP [dm6]	A	T	3.379e^-4	0.988	UPSTREAM Mctp & 1 other INTERGENIC
X	12056658	X_12056658_SNP [dm3] X_12162625_SNP [dm6]	G	A	3.382e^-4	0.988	INTRON Ten-a
2R	6365761	2R_6365761_DEL [dm3] 2R_10478256_DEL [dm6]	GC	G	3.383e^-4	0.988	DOWNSTREAM trsn INTRON whd EXON CR45134	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	18874390	2R_18874390_SNP [dm3] 2R_22986867_SNP [dm6]	C	T	3.388e^-4	0.988	UPSTREAM CG9897 DOWNSTREAM CR42742 INTRON twi
3L	7183274	3L_7183274_SNP [dm3] 3L_7190174_SNP [dm6]	T	C	3.398e^-4	0.988	UPSTREAM Dscam2 INTERGENIC
2R	20188363	2R_20188363_SNP [dm3] 2R_24300840_SNP [dm6]	T	C	3.400e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17819729	3L_17819729_SNP [dm3] 3L_17826629_SNP [dm6]	T	A	3.407e^-4	0.988	INTRON Grd
3R	20362168	3R_20362168_SNP [dm3] 3R_24536446_SNP [dm6]	G	T	3.408e^-4	0.988	UTR_3_PRIME CG5789 DOWNSTREAM ana1
2R	10731181	2R_10731181_SNP [dm3] 2R_14843676_SNP [dm6]	T	A	3.413e^-4	0.988	INTRON NaPi-T
2L	5558708	2L_5558708_SNP [dm3] 2L_5558708_SNP [dm6]	T	A	3.417e^-4	0.988	UTR_3_PRIME GluRIIA UPSTREAM GluRIIB
2R	9412316	2R_9412316_SNP [dm3] 2R_13524811_SNP [dm6]	A	C	3.419e^-4	0.988	UPSTREAM CG13332 INTRON Vmat
3L	18082843	3L_18082843_SNP [dm3] 3L_18089743_SNP [dm6]	T	C	3.435e^-4	0.988	INTRON CG13698
2R	8096216	2R_8096216_SNP [dm3] 2R_12208711_SNP [dm6]	G	A	3.437e^-4	0.988	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2287185	2L_2287185_SNP [dm3] 2L_2287185_SNP [dm6]	A	G	3.438e^-4	0.988	UTR_3_PRIME CG42658 UPSTREAM CG31681
3R	14175457	3R_14175457_SNP [dm3] 3R_18349735_SNP [dm6]	A	T	3.441e^-4	0.988	INTRON CG15803
3L	18335215	3L_18335215_SNP [dm3] 3L_18342115_SNP [dm6]	T	A	3.441e^-4	0.988	INTERGENIC
2L	18622581	2L_18622581_SNP [dm3] 2L_18622581_SNP [dm6]	G	T	3.459e^-4	0.988	INTRON MESR3
3L	5461884	3L_5461884_SNP [dm3] 3L_5468784_SNP [dm6]	A	C	3.480e^-4	0.988	INTERGENIC
3R	5319909	3R_5319909_SNP [dm3] 3R_9494187_SNP [dm6]	G	T	3.487e^-4	0.988	UPSTREAM CG16779 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	18536345	3L_18536345_SNP [dm3] 3L_18543245_SNP [dm6]	G	A	3.489e^-4	0.988	INTERGENIC
3L	2036117	3L_2036117_SNP [dm3] 3L_2036117_SNP [dm6]	G	A	3.491e^-4	0.988	INTERGENIC
3L	4384140	3L_4384140_SNP [dm3] 3L_4384140_SNP [dm6]	A	G	3.495e^-4	0.988	UPSTREAM slow INTERGENIC
3L	16976327	3L_16976327_SNP [dm3] 3L_16983227_SNP [dm6]	G	A	3.497e^-4	0.988	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
3R	18704408	3R_18704408_SNP [dm3] 3R_22878686_SNP [dm6]	G	A	3.509e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	2539192	2R_2539192_SNP [dm3] 2R_6651687_SNP [dm6]	G	A	3.517e^-4	0.988	INTRON debcl	TF binding site mE1_TFBS_sens
2R	2543195	2R_2543195_SNP [dm3] 2R_6655690_SNP [dm6]	C	A	3.517e^-4	0.988	NON_SYNONYMOUS_CODING geminin DOWNSTREAM Opbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	13601918	2L_13601918_SNP [dm3] 2L_13601918_SNP [dm6]	C	T	3.520e^-4	0.988	INTRON kuz
3R	10208462	3R_10208462_DEL [dm3] 3R_14382740_DEL [dm6]	AA	A	3.521e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12472943	3R_12472943_SNP [dm3] 3R_16647221_SNP [dm6]	G	T	3.526e^-4	0.988	UPSTREAM Cctgamma & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3L	19559046	3L_19559046_SNP [dm3] 3L_19565946_SNP [dm6]	T	G	3.539e^-4	0.988	DOWNSTREAM mir-9a & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9931912	3L_9931912_SNP [dm3] 3L_9938812_SNP [dm6]	G	C	3.549e^-4	0.988	INTRON CG34356
2L	8179060	2L_8179060_SNP [dm3] 2L_8179060_SNP [dm6]	G	A	3.561e^-4	0.988	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15466105	2L_15466105_SNP [dm3] 2L_15466105_SNP [dm6]	A	T	3.578e^-4	0.988	INTERGENIC
3L	7330552	3L_7330552_SNP [dm3] 3L_7337452_SNP [dm6]	G	A	3.584e^-4	0.988	SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19402576	2L_19402576_SNP [dm3] 2L_19402576_SNP [dm6]	T	A	3.585e^-4	0.988	DOWNSTREAM Pax & 1 other INTRON Pax
3R	3813182	3R_3813182_SNP [dm3] 3R_7987460_SNP [dm6]	T	A	3.588e^-4	0.988	INTRON CG2781
X	15319635	X_15319635_SNP [dm3] X_15425602_SNP [dm6]	C	T	3.600e^-4	0.988	INTRON Cngl
2R	8096239	2R_8096239_SNP [dm3] 2R_12208734_SNP [dm6]	T	C	3.605e^-4	0.988	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13414433	3R_13414433_SNP [dm3] 3R_17588711_SNP [dm6]	C	T	3.605e^-4	0.988	INTERGENIC
3R	26101587	3R_26101587_SNP [dm3] 3R_30275865_SNP [dm6]	T	C	3.608e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8084645	2R_8084645_SNP [dm3] 2R_12197140_SNP [dm6]	G	A	3.611e^-4	0.988	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
X	16751460	X_16751460_SNP [dm3] X_16857427_SNP [dm6]	T	C	3.611e^-4	0.988	INTRON CG13003
3R	25784282	3R_25784282_SNP [dm3] 3R_29958560_SNP [dm6]	T	G	3.612e^-4	0.988	INTRON TkR99D
2R	3882662	2R_3882662_SNP [dm3] 2R_7995157_SNP [dm6]	A	G	3.614e^-4	0.988	UPSTREAM Dic3 DOWNSTREAM Hey INTERGENIC
2R	8088146	2R_8088146_SNP [dm3] 2R_12200641_SNP [dm6]	T	G	3.618e^-4	0.988	UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	14138534	3R_14138534_SNP [dm3] 3R_18312812_SNP [dm6]	C	G	3.629e^-4	0.988	INTRON PKD
3R	14028897	3R_14028897_SNP [dm3] 3R_18203175_SNP [dm6]	G	A	3.633e^-4	0.988	INTRON CG7985
2R	9255416	2R_9255416_SNP [dm3] 2R_13367911_SNP [dm6]	A	C	3.650e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7411283	3R_7411283_SNP [dm3] 3R_11585561_SNP [dm6]	A	G	3.652e^-4	0.988	DOWNSTREAM CG6791 & 1 other INTRON CG6791
2R	18748629	2R_18748629_SNP [dm3] 2R_22861106_SNP [dm6]	G	T	3.653e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6078825	3R_6078825_SNP [dm3] 3R_10253103_SNP [dm6]	C	A	3.656e^-4	0.988	SYNONYMOUS_CODING CG3999
3R	13893701	3R_13893701_SNP [dm3] 3R_18067979_SNP [dm6]	T	A	3.657e^-4	0.988	INTERGENIC
3R	23332516	3R_23332516_SNP [dm3] 3R_27506794_SNP [dm6]	G	A	3.660e^-4	0.988	INTERGENIC
3R	20324020	3R_20324020_SNP [dm3] 3R_24498298_SNP [dm6]	C	T	3.674e^-4	0.988	INTERGENIC
3R	17645820	3R_17645820_SNP [dm3] 3R_21820098_SNP [dm6]	C	T	3.674e^-4	0.988	INTRON CASK
2L	5079946	2L_5079946_SNP [dm3] 2L_5079946_SNP [dm6]	G	A	3.674e^-4	0.988	INTRON pgant5	TF binding site BDTNP1_TFBS_dl
3R	22237128	3R_22237128_SNP [dm3] 3R_26411406_SNP [dm6]	C	A	3.678e^-4	0.988	INTERGENIC
3R	20228639	3R_20228639_SNP [dm3] 3R_24402917_SNP [dm6]	T	G	3.682e^-4	0.988	INTRON nAChRalpha1
3R	23695414	3R_23695414_SNP [dm3] 3R_27869692_SNP [dm6]	C	A	3.686e^-4	0.988	INTRON CG34353
3R	25485838	3R_25485838_SNP [dm3] 3R_29660116_SNP [dm6]	T	C	3.703e^-4	0.988	UPSTREAM Dop1R2 INTERGENIC
3R	6699278	3R_6699278_SNP [dm3] 3R_10873556_SNP [dm6]	T	C	3.704e^-4	0.988	SYNONYMOUS_CODING CG4596	TF binding site mE1_TFBS_cad
2L	4294758	2L_4294758_SNP [dm3] 2L_4294758_SNP [dm6]	A	T	3.713e^-4	0.988	INTRON tutl	TF binding site mE1_TFBS_chinmo
3L	16543557	3L_16543557_SNP [dm3] 3L_16550457_SNP [dm6]	T	C	3.728e^-4	0.988	INTERGENIC
2R	8090560	2R_8090560_SNP [dm3] 2R_12203055_SNP [dm6]	A	T	3.730e^-4	0.988	INTERGENIC
2R	13158108	2R_13158108_SNP [dm3] 2R_17270603_SNP [dm6]	A	T	3.739e^-4	0.988	INTRON mbl
3R	25658596	3R_25658596_SNP [dm3] 3R_29832874_SNP [dm6]	A	T	3.742e^-4	0.988	INTRON Atg16
2R	14805328	2R_14805328_SNP [dm3] 2R_18917823_SNP [dm6]	G	T	3.743e^-4	0.988	INTRON sano
3R	3856458	3R_3856458_SNP [dm3] 3R_8030736_SNP [dm6]	A	G	3.747e^-4	0.988	UTR_5_PRIME CG2747 UPSTREAM CG10903 INTRON CG10903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18503473	3L_18503473_SNP [dm3] 3L_18510373_SNP [dm6]	C	A	3.760e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	8095372	2R_8095372_INS [dm3] 2R_12207867_INS [dm6]	T	TT	3.772e^-4	0.988	DOWNSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	781554	2L_781554_SNP [dm3] 2L_781554_SNP [dm6]	A	G	3.788e^-4	0.988	SYNONYMOUS_CODING Gr21a	TF binding site mE1_TFBS_chinmo
2L	15736465	2L_15736465_SNP [dm3] 2L_15736465_SNP [dm6]	T	G	3.789e^-4	0.988	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11724889	2R_11724889_SNP [dm3] 2R_15837384_SNP [dm6]	T	A	3.796e^-4	0.988	INTRON tun	regulatory region REDfly_CRMs
X	13354291	X_13354291_INS [dm3] X_13460258_INS [dm6]	C	CTCACAC	3.808e^-4	0.988	INTRON Neto
3L	21112135	3L_21112135_SNP [dm3] 3L_21119035_SNP [dm6]	G	A	3.811e^-4	0.988	INTRON ko	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20563224	3R_20563224_SNP [dm3] 3R_24737502_SNP [dm6]	A	T	3.814e^-4	0.988	INTRON tok
3L	13725805	3L_13725805_SNP [dm3] 3L_13732705_SNP [dm6]	C	T	3.816e^-4	0.988	INTRON bru-3
2R	15399179	2R_15399179_SNP [dm3] 2R_19511674_SNP [dm6]	C	T	3.821e^-4	0.988	SYNONYMOUS_STOP Ir56d DOWNSTREAM Ir56c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13999232	2L_13999232_SNP [dm3] 2L_13999232_SNP [dm6]	T	G	3.822e^-4	0.988	INTRON rk
X	8125959	X_8125959_SNP [dm3] X_8231926_SNP [dm6]	G	A	3.822e^-4	0.988	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3R	3698102	3R_3698102_SNP [dm3] 3R_7872380_SNP [dm6]	G	A	3.823e^-4	0.988	INTRON CG17816
2R	16847086	2R_16847086_SNP [dm3] 2R_20959581_SNP [dm6]	C	T	3.828e^-4	0.988	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8110582	2R_8110582_SNP [dm3] 2R_12223077_SNP [dm6]	C	T	3.833e^-4	0.988	INTERGENIC
X	12004205	X_12004205_SNP [dm3] X_12110172_SNP [dm6]	G	A	3.837e^-4	0.988	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
2R	8078325	2R_8078325_SNP [dm3] 2R_12190820_SNP [dm6]	G	T	3.849e^-4	0.988	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
X	3876431	X_3876431_SNP [dm3] X_3982398_SNP [dm6]	G	A	3.852e^-4	0.988	INTERGENIC
2L	20828261	2L_20828261_SNP [dm3] 2L_20828261_SNP [dm6]	G	A	3.855e^-4	0.988	DOWNSTREAM CG9331 INTERGENIC
3R	10090396	3R_10090396_SNP [dm3] 3R_14264674_SNP [dm6]	T	A	3.859e^-4	0.988	UTR_3_PRIME trx
2R	19814252	2R_19814252_SNP [dm3] 2R_23926729_SNP [dm6]	C	T	3.860e^-4	0.988	SYNONYMOUS_CODING CG2812 UTR_3_PRIME Ca-P60A DOWNSTREAM Ca-P60A	TF binding site mE1_TFBS_cad
3L	10465654	3L_10465654_SNP [dm3] 3L_10472554_SNP [dm6]	C	A	3.870e^-4	0.988	INTERGENIC
2R	10334831	2R_10334831_SNP [dm3] 2R_14447326_SNP [dm6]	G	A	3.874e^-4	0.988	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	21293251	3L_21293251_SNP [dm3] 3L_21300151_SNP [dm6]	T	A	3.879e^-4	0.988	UPSTREAM Cpr78Cc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	802686	2L_802686_SNP [dm3] 2L_802686_SNP [dm6]	C	G	3.881e^-4	0.988	INTERGENIC
3R	21223322	3R_21223322_SNP [dm3] 3R_25397600_SNP [dm6]	T	A	3.891e^-4	0.988	DOWNSTREAM Muc96D INTRON Fur1
3R	21223332	3R_21223332_SNP [dm3] 3R_25397610_SNP [dm6]	G	A	3.891e^-4	0.988	DOWNSTREAM Muc96D INTRON Fur1
3R	24259066	3R_24259066_SNP [dm3] 3R_28433344_SNP [dm6]	T	A	3.894e^-4	0.988	INTRON beat-VI
3R	4468018	3R_4468018_SNP [dm3] 3R_8642296_SNP [dm6]	C	A	3.899e^-4	0.988	DOWNSTREAM tRNA:Y1:85Ae & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8093258	2R_8093258_SNP [dm3] 2R_12205753_SNP [dm6]	A	T	3.933e^-4	0.988	UPSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6192028	3R_6192028_SNP [dm3] 3R_10366306_SNP [dm6]	G	T	3.938e^-4	0.988	INTRON Rfx
2L	2867596	2L_2867596_SNP [dm3] 2L_2867596_SNP [dm6]	T	C	3.945e^-4	0.988	SYNONYMOUS_CODING CG2991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12004124	X_12004124_SNP [dm3] X_12110091_SNP [dm6]	G	T	3.946e^-4	0.988	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_sens
2R	8087757	2R_8087757_SNP [dm3] 2R_12200252_SNP [dm6]	A	G	3.948e^-4	0.988	UPSTREAM snoRNA:Me28S-C3420b & 1 other INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	22065438	3R_22065438_SNP [dm3] 3R_26239716_SNP [dm6]	A	G	3.950e^-4	0.988	INTRON CR42745
3L	14199317	3L_14199317_SNP [dm3] 3L_14206217_SNP [dm6]	A	T	3.952e^-4	0.988	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8084832	2R_8084832_SNP [dm3] 2R_12197327_SNP [dm6]	T	C	3.952e^-4	0.988	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
3R	14138339	3R_14138339_SNP [dm3] 3R_18312617_SNP [dm6]	T	C	3.953e^-4	0.988	UPSTREAM PKD INTRON PKD	TF binding site mE1_TFBS_HSA
3R	16980072	3R_16980072_SNP [dm3] 3R_21154350_SNP [dm6]	T	G	3.978e^-4	0.988	INTRON SNF4Agamma
X	910288	X_910288_SNP [dm3] X_1016255_SNP [dm6]	T	C	3.985e^-4	0.988	INTRON su_w[a]_ & 1 other
3R	11230324	3R_11230324_SNP [dm3] 3R_15404602_SNP [dm6]	C	G	4.000e^-4	0.988	INTRON CG6125	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3698404	3R_3698404_SNP [dm3] 3R_7872682_SNP [dm6]	A	G	4.006e^-4	0.988	INTRON CG17816
3R	20524191	3R_20524191_SNP [dm3] 3R_24698469_SNP [dm6]	T	G	4.006e^-4	0.988	INTRON slo
2L	1405625	2L_1405625_SNP [dm3] 2L_1405625_SNP [dm6]	G	A	4.011e^-4	0.988	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5079956	2L_5079956_INS [dm3] 2L_5079956_INS [dm6]	G	TA	4.013e^-4	0.988	INTRON pgant5	TF binding site BDTNP1_TFBS_dl
2R	8092786	2R_8092786_SNP [dm3] 2R_12205281_SNP [dm6]	C	T	4.019e^-4	0.988	UPSTREAM CR45276 INTERGENIC
2R	8132380	2R_8132380_SNP [dm3] 2R_12244875_SNP [dm6]	A	T	4.019e^-4	0.988	UPSTREAM CG43244 INTERGENIC
X	1468997	X_1468997_SNP [dm3] X_1574964_SNP [dm6]	A	G	4.026e^-4	0.988	UPSTREAM br INTRON Mur2B
2R	8116777	2R_8116777_SNP [dm3] 2R_12229272_SNP [dm6]	C	A	4.031e^-4	0.988	UTR_5_PRIME CG8854
X	14235409	X_14235409_SNP [dm3] X_14341376_SNP [dm6]	C	A	4.032e^-4	0.988	INTRON dpr8
3R	12334570	3R_12334570_SNP [dm3] 3R_16508848_SNP [dm6]	T	C	4.034e^-4	0.988	INTRON CG42342	TF binding site BDTNP1_TFBS_twi
3L	7183144	3L_7183144_SNP [dm3] 3L_7190044_SNP [dm6]	T	C	4.046e^-4	0.988	UPSTREAM Dscam2 INTERGENIC
2L	19232716	2L_19232716_SNP [dm3] 2L_19232716_SNP [dm6]	G	A	4.061e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7780124	3L_7780124_SNP [dm3] 3L_7787024_SNP [dm6]	C	A	4.064e^-4	0.988	INTRON CG32369
2R	16847394	2R_16847394_SNP [dm3] 2R_20959889_SNP [dm6]	G	A	4.071e^-4	0.988	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4284485	X_4284485_SNP [dm3] X_4390452_SNP [dm6]	C	A	4.073e^-4	0.988	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	9208732	2L_9208732_SNP [dm3] 2L_9208732_SNP [dm6]	C	A	4.075e^-4	0.988	INTRON tai
2L	13239069	2L_13239069_SNP [dm3] 2L_13239069_SNP [dm6]	G	A	4.079e^-4	0.988	SYNONYMOUS_CODING CG5867 UPSTREAM CG5945
2L	6783841	2L_6783841_DEL [dm3] 2L_6783841_DEL [dm6]	ACT	A	4.083e^-4	0.988	INTRON nrv1
3L	10465638	3L_10465638_SNP [dm3] 3L_10472538_SNP [dm6]	G	A	4.094e^-4	0.988	INTERGENIC
X	3231456	X_3231456_SNP [dm3] X_3337423_SNP [dm6]	T	C	4.109e^-4	0.988	SYNONYMOUS_CODING dnc INTRON CR44886
3R	8198271	3R_8198271_SNP [dm3] 3R_12372549_SNP [dm6]	C	T	4.136e^-4	0.988	SYNONYMOUS_CODING GstD2 UPSTREAM GstD3
3L	1454183	3L_1454183_SNP [dm3] 3L_1454183_SNP [dm6]	C	T	4.141e^-4	0.988	INTRON Ptp61F
3R	3397585	3R_3397585_DEL [dm3] 3R_7571863_DEL [dm6]	ATT	A	4.146e^-4	0.988	UTR_3_PRIME CG34127
2R	8112985	2R_8112985_SNP [dm3] 2R_12225480_SNP [dm6]	G	T	4.148e^-4	0.988	INTRON CG8854
3R	12471727	3R_12471727_SNP [dm3] 3R_16646005_SNP [dm6]	C	T	4.155e^-4	0.988	DOWNSTREAM CG10326 INTRON CG10324
2R	8122444	2R_8122444_MNP [dm3] 2R_12234939_MNP [dm6]	TAAAGG	ATCCCC	4.160e^-4	0.988	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	15407790	2L_15407790_SNP [dm3] 2L_15407790_SNP [dm6]	C	T	4.171e^-4	0.988	INTERGENIC
2R	1111419	2R_1111419_SNP [dm3] 2R_5223914_SNP [dm6]	T	C	4.177e^-4	0.988	INTRON Nipped-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	13787379	3R_13787379_SNP [dm3] 3R_17961657_SNP [dm6]	T	A	4.179e^-4	0.988	INTRON cpo
3R	4413032	3R_4413032_SNP [dm3] 3R_8587310_SNP [dm6]	G	T	4.182e^-4	0.988	INTRON 5-HT2B
2R	8092783	2R_8092783_SNP [dm3] 2R_12205278_SNP [dm6]	G	T	4.182e^-4	0.988	UPSTREAM CR45276 INTERGENIC
X	10808738	X_10808738_SNP [dm3] X_10914705_SNP [dm6]	C	A	4.183e^-4	0.988	INTRON CG43901
3R	2324575	3R_2324575_SNP [dm3] 3R_6498853_SNP [dm6]	T	A	4.184e^-4	0.988	INTERGENIC
3L	2787642	3L_2787642_SNP [dm3] 3L_2787642_SNP [dm6]	A	T	4.187e^-4	0.988	UTR_3_PRIME CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8092784	2R_8092784_INS [dm3] 2R_12205279_INS [dm6]	A	AT	4.188e^-4	0.988	UPSTREAM CR45276 INTERGENIC
3L	10465672	3L_10465672_SNP [dm3] 3L_10472572_SNP [dm6]	C	G	4.194e^-4	0.988	INTERGENIC
3L	11002798	3L_11002798_SNP [dm3] 3L_11009698_SNP [dm6]	C	T	4.195e^-4	0.988	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	4.197e^-4	0.988	INTERGENIC
2L	4691926	2L_4691926_SNP [dm3] 2L_4691926_SNP [dm6]	C	T	4.199e^-4	0.988	INTERGENIC
X	21131974	X_21131974_DEL [dm3] X_21260947_DEL [dm6]	ACCTTCCA	A	4.201e^-4	0.988	INTRON CG32521
2R	2540582	2R_2540582_DEL [dm3] 2R_6653077_DEL [dm6]	AG	A	4.203e^-4	0.988	UPSTREAM Opbp DOWNSTREAM debcl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3L	10913663	3L_10913663_SNP [dm3] 3L_10920563_SNP [dm6]	C	T	4.211e^-4	0.988	INTERGENIC
2L	19605446	2L_19605446_SNP [dm3] 2L_19605446_SNP [dm6]	T	G	4.214e^-4	0.988	INTRON Lar EXON CR44978	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	9179925	X_9179925_SNP [dm3] X_9285892_SNP [dm6]	A	C	4.217e^-4	0.988	UTR_5_PRIME lz
3R	13788883	3R_13788883_SNP [dm3] 3R_17963161_SNP [dm6]	C	T	4.218e^-4	0.988	INTRON cpo
3L	8270865	3L_8270865_SNP [dm3] 3L_8277765_SNP [dm6]	A	G	4.223e^-4	0.988	INTRON Dscam4
2R	9926631	2R_9926631_SNP [dm3] 2R_14039126_SNP [dm6]	T	C	4.224e^-4	0.988	SYNONYMOUS_CODING mam	TF binding site mE1_TFBS_chinmo
2R	8114368	2R_8114368_SNP [dm3] 2R_12226863_SNP [dm6]	T	C	4.234e^-4	0.988	UPSTREAM CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
2L	11208210	2L_11208210_SNP [dm3] 2L_11208210_SNP [dm6]	C	T	4.245e^-4	0.988	INTERGENIC
2L	10495219	2L_10495219_SNP [dm3] 2L_10495219_SNP [dm6]	G	A	4.256e^-4	0.988	INTRON Myo31DF
2L	11208105	2L_11208105_SNP [dm3] 2L_11208105_SNP [dm6]	G	T	4.257e^-4	0.988	INTERGENIC
2R	8086875	2R_8086875_DEL [dm3] 2R_12199370_DEL [dm6]	AA	A	4.259e^-4	0.988	UTR_3_PRIME RpS11 UPSTREAM CG8858 & 1 other DOWNSTREAM RpS11 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	2167099	3R_2167099_SNP [dm3] 3R_6341377_SNP [dm6]	T	G	4.259e^-4	0.988	UTR_3_PRIME Osi20 UPSTREAM CG17917	TF binding site mE1_TFBS_cad
X	7997451	X_7997451_SNP [dm3] X_8103418_SNP [dm6]	T	A	4.265e^-4	0.988	UTR_3_PRIME Gclc
3R	21224127	3R_21224127_SNP [dm3] 3R_25398405_SNP [dm6]	C	T	4.277e^-4	0.988	NON_SYNONYMOUS_CODING Muc96D INTRON Fur1
3R	475569	3R_475569_SNP [dm3] 3R_4649847_SNP [dm6]	C	T	4.277e^-4	0.988	DOWNSTREAM rpk INTRON Karybeta3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16945548	3R_16945548_SNP [dm3] 3R_21119826_SNP [dm6]	A	T	4.284e^-4	0.988	UTR_3_PRIME slmb UPSTREAM Bdbt DOWNSTREAM slmb	TF binding site mE1_TFBS_HSA
3L	12031268	3L_12031268_SNP [dm3] 3L_12038168_SNP [dm6]	C	G	4.293e^-4	0.988	INTRON rols
2R	8077706	2R_8077706_SNP [dm3] 2R_12190201_SNP [dm6]	G	T	4.293e^-4	0.988	SYNONYMOUS_CODING Cyp6g2 UPSTREAM Cyp6t3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8101396	2R_8101396_SNP [dm3] 2R_12213891_SNP [dm6]	A	G	4.300e^-4	0.988	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14646668	2R_14646668_SNP [dm3] 2R_18759163_SNP [dm6]	A	G	4.302e^-4	0.988	SYNONYMOUS_CODING Jabba
2R	8110983	2R_8110983_DEL [dm3] 2R_12223478_DEL [dm6]	CT	A	4.306e^-4	0.988	DOWNSTREAM CG8854 INTERGENIC
2R	8092269	2R_8092269_SNP [dm3] 2R_12204764_SNP [dm6]	T	A	4.309e^-4	0.988	INTERGENIC
2L	8506342	2L_8506342_SNP [dm3] 2L_8506342_SNP [dm6]	A	G	4.314e^-4	0.988	INTRON Dh31
2R	8090941	2R_8090941_INS [dm3] 2R_12203436_INS [dm6]	C	CG	4.317e^-4	0.988	INTERGENIC
2R	3310241	2R_3310241_SNP [dm3] 2R_7422736_SNP [dm6]	A	G	4.327e^-4	0.988	INTRON so EXON CR44202	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	480616	3L_480616_SNP [dm3] 3L_480616_SNP [dm6]	G	A	4.330e^-4	0.988	INTRON klar	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18124397	X_18124397_SNP [dm3] X_18230364_SNP [dm6]	A	G	4.330e^-4	0.988	INTERGENIC
2R	16307740	2R_16307740_SNP [dm3] 2R_20420235_SNP [dm6]	G	A	4.336e^-4	0.988	INTERGENIC
2R	8145977	2R_8145977_SNP [dm3] 2R_12258472_SNP [dm6]	G	A	4.339e^-4	0.988	NON_SYNONYMOUS_CODING Vha36-2 UPSTREAM Cam & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8130568	3R_8130568_SNP [dm3] 3R_12304846_SNP [dm6]	G	T	4.340e^-4	0.988	INTERGENIC
2R	6134395	2R_6134395_SNP [dm3] 2R_10246890_SNP [dm6]	G	A	4.346e^-4	0.988	UPSTREAM CG12914 DOWNSTREAM Hdc INTRON CG12209	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6134401	2R_6134401_SNP [dm3] 2R_10246896_SNP [dm6]	A	G	4.346e^-4	0.988	SPLICE_SITE_REGION CG12209 UPSTREAM CG12914 DOWNSTREAM Hdc INTRON CG12209	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6343156	3L_6343156_SNP [dm3] 3L_6350056_SNP [dm6]	A	C	4.346e^-4	0.988	UPSTREAM Sfp65A INTRON CG13300
2L	11936618	2L_11936618_SNP [dm3] 2L_11936618_SNP [dm6]	T	C	4.348e^-4	0.988	SYNONYMOUS_CODING Or33b DOWNSTREAM Or33a
X	13306755	X_13306755_SNP [dm3] X_13412722_SNP [dm6]	T	C	4.355e^-4	0.988	UTR_5_PRIME CG1998 UPSTREAM Set2	TF binding site BDTNP1_TFBS_dl
3L	4731041	3L_4731041_SNP [dm3] 3L_4731041_SNP [dm6]	C	A	4.366e^-4	0.988	INTRON RhoGEF64C
2R	8112580	2R_8112580_SNP [dm3] 2R_12225075_SNP [dm6]	T	C	4.400e^-4	0.988	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4896123	X_4896123_DEL [dm3] X_5002090_DEL [dm6]	CC	C	4.404e^-4	0.988	INTRON CR44833	regulatory region REDfly_CRMs
2R	8179555	2R_8179555_SNP [dm3] 2R_12292050_SNP [dm6]	T	G	4.404e^-4	0.988	INTRON CG42700
X	14679963	X_14679963_SNP [dm3] X_14785930_SNP [dm6]	C	A	4.405e^-4	0.988	SYNONYMOUS_CODING Ag5r UPSTREAM CR45522
2R	20188367	2R_20188367_SNP [dm3] 2R_24300844_SNP [dm6]	T	C	4.408e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2167014	3R_2167014_DEL [dm3] 3R_6341292_DEL [dm6]	ATCT	C	4.409e^-4	0.988	UTR_3_PRIME Osi20 UPSTREAM CG17917	TF binding site mE1_TFBS_cad
2R	8088154	2R_8088154_SNP [dm3] 2R_12200649_SNP [dm6]	T	C	4.412e^-4	0.988	UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	8114058	3R_8114058_SNP [dm3] 3R_12288336_SNP [dm6]	T	G	4.415e^-4	0.988	INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	8124047	3R_8124047_SNP [dm3] 3R_12298325_SNP [dm6]	C	T	4.415e^-4	0.988	INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9584338	2R_9584338_SNP [dm3] 2R_13696833_SNP [dm6]	T	A	4.418e^-4	0.988	INTRON fas
2L	14724516	2L_14724516_SNP [dm3] 2L_14724516_SNP [dm6]	A	C	4.420e^-4	0.988	DOWNSTREAM CG42685 INTERGENIC
3R	15188362	3R_15188362_SNP [dm3] 3R_19362640_SNP [dm6]	G	A	4.421e^-4	0.988	INTERGENIC
2R	7343838	2R_7343838_DEL [dm3] 2R_11456333_DEL [dm6]	CAC	C	4.421e^-4	0.988	INTRON E_Pc_	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	8120292	2R_8120292_SNP [dm3] 2R_12232787_SNP [dm6]	T	C	4.431e^-4	0.988	INTERGENIC
3R	14342228	3R_14342228_SNP [dm3] 3R_18516506_SNP [dm6]	A	T	4.435e^-4	0.988	INTRON fru	TF binding site BDTNP1_TFBS_twi
3R	9769339	3R_9769339_SNP [dm3] 3R_13943617_SNP [dm6]	C	T	4.443e^-4	0.988	UPSTREAM Art9 INTERGENIC
3L	1179712	3L_1179712_SNP [dm3] 3L_1179712_SNP [dm6]	G	C	4.445e^-4	0.988	INTERGENIC
2L	6769360	2L_6769360_SNP [dm3] 2L_6769360_SNP [dm6]	C	T	4.446e^-4	0.988	DOWNSTREAM CG11321 INTRON CG11321
2R	8124467	2R_8124467_SNP [dm3] 2R_12236962_SNP [dm6]	A	G	4.447e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11604529	2R_11604529_SNP [dm3] 2R_15717024_SNP [dm6]	T	A	4.449e^-4	0.988	INTERGENIC
2R	1567710	2R_1567710_SNP [dm3] 2R_5680205_SNP [dm6]	T	G	4.453e^-4	0.988	NON_SYNONYMOUS_CODING scaf	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	5388431	X_5388431_SNP [dm3] X_5494398_SNP [dm6]	G	T	4.455e^-4	0.988	SYNONYMOUS_CODING frma DOWNSTREAM SPR
2L	8178981	2L_8178981_SNP [dm3] 2L_8178981_SNP [dm6]	A	T	4.456e^-4	0.988	INTRON Piezo
3L	17591663	3L_17591663_SNP [dm3] 3L_17598563_SNP [dm6]	G	A	4.463e^-4	0.988	INTRON Eip74EF
3R	6283217	3R_6283217_SNP [dm3] 3R_10457495_SNP [dm6]	A	G	4.468e^-4	0.988	INTERGENIC
2L	18848904	2L_18848904_SNP [dm3] 2L_18848904_SNP [dm6]	C	T	4.475e^-4	0.988	INTRON CG17321
3L	18489367	3L_18489367_SNP [dm3] 3L_18496267_SNP [dm6]	A	T	4.476e^-4	0.988	INTRON AstC-R2
2L	3985248	2L_3985248_SNP [dm3] 2L_3985248_SNP [dm6]	C	G	4.479e^-4	0.988	INTRON fred
2L	7175094	2L_7175094_DEL [dm3] 2L_7175094_DEL [dm6]	ACATA	A	4.482e^-4	0.988	UPSTREAM CR44610 INTERGENIC
2R	8115272	2R_8115272_SNP [dm3] 2R_12227767_SNP [dm6]	T	C	4.482e^-4	0.988	UPSTREAM CG8854 INTRON CG8854
2L	9538600	2L_9538600_SNP [dm3] 2L_9538600_SNP [dm6]	C	T	4.485e^-4	0.988	SYNONYMOUS_CODING Oatp30B
3R	15010608	3R_15010608_SNP [dm3] 3R_19184886_SNP [dm6]	A	T	4.490e^-4	0.988	INTRON CG31475
3R	4176716	3R_4176716_SNP [dm3] 3R_8350994_SNP [dm6]	C	A	4.491e^-4	0.988	SYNONYMOUS_CODING Atg13	TF binding site mE1_TFBS_sens
3R	13014368	3R_13014368_SNP [dm3] 3R_17188646_SNP [dm6]	C	T	4.493e^-4	0.988	INTRON Mur89F
3L	1243546	3L_1243546_SNP [dm3] 3L_1243546_SNP [dm6]	T	A	4.498e^-4	0.988	NON_SYNONYMOUS_CODING Klp61F
3L	1255002	3L_1255002_SNP [dm3] 3L_1255002_SNP [dm6]	C	T	4.498e^-4	0.988	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	9650605	2L_9650605_SNP [dm3] 2L_9650605_SNP [dm6]	C	T	4.518e^-4	0.988	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5867485	3L_5867485_SNP [dm3] 3L_5874385_SNP [dm6]	G	T	4.523e^-4	0.988	DOWNSTREAM CG5568 INTRON CG18586	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8121485	2R_8121485_SNP [dm3] 2R_12233980_SNP [dm6]	T	C	4.532e^-4	0.988	DOWNSTREAM CR44313 INTERGENIC
2R	4915533	2R_4915533_SNP [dm3] 2R_9028028_SNP [dm6]	C	T	4.534e^-4	0.988	INTRON CG8170
X	3422598	X_3422598_SNP [dm3] X_3528565_SNP [dm6]	T	A	4.542e^-4	0.988	INTRON CG32791
2R	14598512	2R_14598512_INS [dm3] 2R_18711007_INS [dm6]	A	ATGCGTAC	4.548e^-4	0.988	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14493160	2L_14493160_SNP [dm3] 2L_14493160_SNP [dm6]	A	G	4.562e^-4	0.988	SYNONYMOUS_STOP noc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	16543554	3L_16543554_SNP [dm3] 3L_16550454_SNP [dm6]	G	A	4.581e^-4	0.988	INTERGENIC
3R	11014539	3R_11014539_SNP [dm3] 3R_15188817_SNP [dm6]	A	C	4.585e^-4	0.988	SYNONYMOUS_CODING Gyc88E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14755919	3R_14755919_SNP [dm3] 3R_18930197_SNP [dm6]	A	C	4.590e^-4	0.988	INTRON CG42613
2R	14373337	2R_14373337_SNP [dm3] 2R_18485832_SNP [dm6]	G	T	4.592e^-4	0.988	INTRON CG30116
3L	16854434	3L_16854434_SNP [dm3] 3L_16861334_SNP [dm6]	C	T	4.600e^-4	0.988	SYNONYMOUS_CODING CG13029 UTR_5_PRIME CG13029 DOWNSTREAM sinah INTRON Rh4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	8084529	2R_8084529_SNP [dm3] 2R_12197024_SNP [dm6]	T	C	4.603e^-4	0.988	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
3R	21540802	3R_21540802_SNP [dm3] 3R_25715080_SNP [dm6]	T	G	4.610e^-4	0.988	INTRON LpR2
2R	8086891	2R_8086891_SNP [dm3] 2R_12199386_SNP [dm6]	T	G	4.615e^-4	0.988	UTR_3_PRIME RpS11 UPSTREAM CG8858 & 1 other DOWNSTREAM RpS11 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9937063	3L_9937063_SNP [dm3] 3L_9943963_SNP [dm6]	T	A	4.631e^-4	0.988	INTRON CG34356
2L	15102132	2L_15102132_SNP [dm3] 2L_15102132_SNP [dm6]	T	A	4.640e^-4	0.988	INTERGENIC
2R	8112685	2R_8112685_SNP [dm3] 2R_12225180_SNP [dm6]	T	C	4.652e^-4	0.988	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
2R	8179522	2R_8179522_SNP [dm3] 2R_12292017_SNP [dm6]	G	C	4.659e^-4	0.988	INTRON CG42700
3L	16881430	3L_16881430_SNP [dm3] 3L_16888330_SNP [dm6]	G	T	4.660e^-4	0.988	INTRON Lmpt
3L	2765413	3L_2765413_SNP [dm3] 3L_2765413_SNP [dm6]	G	A	4.665e^-4	0.988	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10348745	3L_10348745_SNP [dm3] 3L_10355645_SNP [dm6]	C	T	4.666e^-4	0.988	INTRON CR44327
3L	9292436	3L_9292436_SNP [dm3] 3L_9299336_SNP [dm6]	C	A	4.668e^-4	0.988	INTERGENIC
2L	5511302	2L_5511302_SNP [dm3] 2L_5511302_SNP [dm6]	T	A	4.689e^-4	0.988	INTERGENIC
2R	8121576	2R_8121576_SNP [dm3] 2R_12234071_SNP [dm6]	A	G	4.700e^-4	0.988	EXON CR44313
3R	24987294	3R_24987294_SNP [dm3] 3R_29161572_SNP [dm6]	T	C	4.706e^-4	0.988	SYNONYMOUS_CODING CG11897
X	14307174	X_14307174_SNP [dm3] X_14413141_SNP [dm6]	A	G	4.711e^-4	0.988	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6134421	2R_6134421_SNP [dm3] 2R_10246916_SNP [dm6]	T	A	4.714e^-4	0.988	SYNONYMOUS_CODING CG12209 UPSTREAM CG12914 DOWNSTREAM Hdc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	453234	3R_453234_SNP [dm3] 3R_4627512_SNP [dm6]	T	C	4.715e^-4	0.988	INTRON 5-HT2A
X	3014944	X_3014944_SNP [dm3] X_3120911_SNP [dm6]	C	T	4.723e^-4	0.988	INTRON kirre
2R	8179587	2R_8179587_SNP [dm3] 2R_12292082_SNP [dm6]	A	G	4.726e^-4	0.988	INTRON CG42700
3L	12973908	3L_12973908_INS [dm3] 3L_12980808_INS [dm6]	G	GGA	4.733e^-4	0.988	INTERGENIC
3L	2695137	3L_2695137_SNP [dm3] 3L_2695137_SNP [dm6]	T	A	4.738e^-4	0.988	INTRON Fife
3L	1275453	3L_1275453_SNP [dm3] 3L_1275453_SNP [dm6]	G	A	4.754e^-4	0.988	UPSTREAM CG32333 DOWNSTREAM CG9134 INTERGENIC
3L	1239788	3L_1239788_INS [dm3] 3L_1239788_INS [dm6]	A	AT	4.765e^-4	0.988	INTRON CG9194	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	5142037	3L_5142037_SNP [dm3] 3L_5148937_SNP [dm6]	C	T	4.785e^-4	0.988	SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen	TF binding site mE1_TFBS_chinmo
3L	9931950	3L_9931950_SNP [dm3] 3L_9938850_SNP [dm6]	A	C	4.790e^-4	0.988	INTRON CG34356
2L	3960166	2L_3960166_SNP [dm3] 2L_3960166_SNP [dm6]	T	A	4.805e^-4	0.988	INTRON fred
2L	3645941	2L_3645941_SNP [dm3] 2L_3645941_SNP [dm6]	T	A	4.811e^-4	0.988	UTR_5_PRIME for INTRON for
3L	9931838	3L_9931838_SNP [dm3] 3L_9938738_SNP [dm6]	C	A	4.816e^-4	0.988	INTRON CG34356
2L	2947944	2L_2947944_SNP [dm3] 2L_2947944_SNP [dm6]	C	T	4.822e^-4	0.988	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_chinmo
X	17393823	X_17393823_SNP [dm3] X_17499790_SNP [dm6]	A	T	4.827e^-4	0.988	INTRON CG43658
3L	10324009	3L_10324009_SNP [dm3] 3L_10330909_SNP [dm6]	G	A	4.832e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	15327511	X_15327511_SNP [dm3] X_15433478_SNP [dm6]	C	A	4.850e^-4	0.988	INTRON Cngl	transposable element FlyBase
X	4998762	X_4998762_SNP [dm3] X_5104729_SNP [dm6]	T	A	4.853e^-4	0.988	INTRON rg & 1 other
3R	26913697	3R_26913697_SNP [dm3] 3R_31087975_SNP [dm6]	T	G	4.854e^-4	0.988	INTERGENIC
3R	15786382	3R_15786382_SNP [dm3] 3R_19960660_SNP [dm6]	T	C	4.857e^-4	0.988	INTRON Hs6st
3R	26180891	3R_26180891_INS [dm3] 3R_30355169_INS [dm6]	C	CTG	4.859e^-4	0.988	INTRON hdc
2L	18622546	2L_18622546_SNP [dm3] 2L_18622546_SNP [dm6]	A	C	4.860e^-4	0.988	INTRON MESR3
3L	8754753	3L_8754753_SNP [dm3] 3L_8761653_SNP [dm6]	T	C	4.861e^-4	0.988	SYNONYMOUS_CODING Fhos START_GAINED Fhos UTR_5_PRIME Fhos	TF binding site mE1_TFBS_inv
2L	15509307	2L_15509307_SNP [dm3] 2L_15509307_SNP [dm6]	A	C	4.866e^-4	0.988	INTERGENIC
X	5660778	X_5660778_SNP [dm3] X_5766745_SNP [dm6]	G	A	4.869e^-4	0.988	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_sens
3L	10348561	3L_10348561_SNP [dm3] 3L_10355461_SNP [dm6]	G	A	4.875e^-4	0.988	INTRON CR44327	TF binding site BDTNP1_TFBS_twi
3L	13729228	3L_13729228_SNP [dm3] 3L_13736128_SNP [dm6]	T	C	4.875e^-4	0.988	INTRON bru-3
2R	20965795	2R_20965795_INS [dm3] 2R_25078272_INS [dm6]	A	AT	4.882e^-4	0.988	INTRON gol
X	12330490	X_12330490_SNP [dm3] X_12436457_SNP [dm6]	G	A	4.886e^-4	0.988	INTRON Pkcdelta
3R	25334874	3R_25334874_SNP [dm3] 3R_29509152_SNP [dm6]	A	C	4.900e^-4	0.988	INTERGENIC
3R	6692156	3R_6692156_SNP [dm3] 3R_10866434_SNP [dm6]	A	G	4.905e^-4	0.988	INTRON SelR
2L	8472879	2L_8472879_SNP [dm3] 2L_8472879_SNP [dm6]	C	G	4.906e^-4	0.988	INTRON d
2R	7084560	2R_7084560_SNP [dm3] 2R_11197055_SNP [dm6]	T	C	4.907e^-4	0.988	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	445854	3R_445854_SNP [dm3] 3R_4620132_SNP [dm6]	C	T	4.908e^-4	0.988	INTRON 5-HT2A
3L	4732795	3L_4732795_SNP [dm3] 3L_4732795_SNP [dm6]	A	C	4.912e^-4	0.988	INTRON RhoGEF64C
2L	6178111	2L_6178111_SNP [dm3] 2L_6178111_SNP [dm6]	A	G	4.921e^-4	0.988	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	9033817	2L_9033817_SNP [dm3] 2L_9033817_SNP [dm6]	T	C	4.924e^-4	0.988	INTERGENIC
3R	19442328	3R_19442328_SNP [dm3] 3R_23616606_SNP [dm6]	G	A	4.927e^-4	0.988	INTRON CG31145
2L	8472971	2L_8472971_SNP [dm3] 2L_8472971_SNP [dm6]	A	T	4.930e^-4	0.988	INTRON d
3R	458972	3R_458972_SNP [dm3] 3R_4633250_SNP [dm6]	A	C	4.948e^-4	0.988	UTR_3_PRIME 5-HT2A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11042828	3L_11042828_SNP [dm3] 3L_11049728_SNP [dm6]	C	T	4.952e^-4	0.988	UPSTREAM CG43693 & 1 other INTRON CG43693
3R	8123460	3R_8123460_SNP [dm3] 3R_12297738_SNP [dm6]	T	C	4.965e^-4	0.988	INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8120283	2R_8120283_SNP [dm3] 2R_12232778_SNP [dm6]	A	G	4.965e^-4	0.988	INTERGENIC
3R	16549981	3R_16549981_SNP [dm3] 3R_20724259_SNP [dm6]	C	T	4.967e^-4	0.988	INTERGENIC
3L	11287380	3L_11287380_SNP [dm3] 3L_11294280_SNP [dm6]	A	G	4.971e^-4	0.988	SYNONYMOUS_CODING CG6175	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
3R	8209802	3R_8209802_SNP [dm3] 3R_12384080_SNP [dm6]	A	G	4.982e^-4	0.988	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	3106767	X_3106767_SNP [dm3] X_3212734_SNP [dm6]	T	C	4.988e^-4	0.988	INTRON dnc
3R	8900984	3R_8900984_SNP [dm3] 3R_13075262_SNP [dm6]	C	T	4.994e^-4	0.988	SYNONYMOUS_CODING sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	4308125	2L_4308125_SNP [dm3] 2L_4308125_SNP [dm6]	G	A	5.000e^-4	0.988	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21319993	3L_21319993_SNP [dm3] 3L_21326893_SNP [dm6]	A	T	5.003e^-4	0.988	INTRON Rab26
2R	6369187	2R_6369187_SNP [dm3] 2R_10481682_SNP [dm6]	A	T	5.012e^-4	0.988	UTR_3_PRIME CG17765 DOWNSTREAM lola & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3R	18735615	3R_18735615_SNP [dm3] 3R_22909893_SNP [dm6]	T	G	5.026e^-4	0.988	INTRON klg
2L	8891979	2L_8891979_SNP [dm3] 2L_8891979_SNP [dm6]	T	C	5.042e^-4	0.988	UTR_3_PRIME CG42713 DOWNSTREAM CG42713
X	11414856	X_11414856_SNP [dm3] X_11520823_SNP [dm6]	C	A	5.046e^-4	0.988	INTRON Drak	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8112937	2R_8112937_SNP [dm3] 2R_12225432_SNP [dm6]	G	A	5.046e^-4	0.988	INTRON CG8854
X	12054464	X_12054464_SNP [dm3] X_12160431_SNP [dm6]	A	G	5.048e^-4	0.988	INTRON Ten-a
2L	912300	2L_912300_SNP [dm3] 2L_912300_SNP [dm6]	C	T	5.060e^-4	0.988	DOWNSTREAM CR44061 INTERGENIC
2L	15411678	2L_15411678_SNP [dm3] 2L_15411678_SNP [dm6]	T	A	5.074e^-4	0.988	INTERGENIC
3R	20820317	3R_20820317_SNP [dm3] 3R_24994595_SNP [dm6]	T	C	5.077e^-4	0.988	INTRON tnc	TF binding site mE1_TFBS_cad
3R	8209837	3R_8209837_SNP [dm3] 3R_12384115_SNP [dm6]	T	C	5.083e^-4	0.988	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	19782814	3R_19782814_SNP [dm3] 3R_23957092_SNP [dm6]	T	G	5.084e^-4	0.988	INTRON Aats-glupro	TF binding site mE1_TFBS_cad
X	14670764	X_14670764_SNP [dm3] X_14776731_SNP [dm6]	A	T	5.088e^-4	0.988	UPSTREAM CG5347 DOWNSTREAM CG5334 INTERGENIC
2R	13397424	2R_13397424_SNP [dm3] 2R_17509919_SNP [dm6]	A	T	5.104e^-4	0.988	START_GAINED CG34193 UTR_5_PRIME CG34193 UPSTREAM CG34193
2L	13642383	2L_13642383_SNP [dm3] 2L_13642383_SNP [dm6]	T	A	5.108e^-4	0.988	UTR_5_PRIME ics UPSTREAM CR44726	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	19256976	X_19256976_SNP [dm3] X_19362943_SNP [dm6]	A	C	5.115e^-4	0.988	INTRON kek5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10084330	2R_10084330_SNP [dm3] 2R_14196825_SNP [dm6]	G	A	5.126e^-4	0.988	SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10084417	2R_10084417_SNP [dm3] 2R_14196912_SNP [dm6]	C	T	5.126e^-4	0.988	SYNONYMOUS_CODING CG30069	TF binding site mE1_TFBS_sens
3R	17148053	3R_17148053_SNP [dm3] 3R_21322331_SNP [dm6]	C	T	5.128e^-4	0.988	SYNONYMOUS_CODING CG16791	TF binding site mE1_TFBS_cad
2L	18770448	2L_18770448_INS [dm3] 2L_18770448_INS [dm6]	C	CCC	5.130e^-4	0.988	INTRON ham
2L	18770449	2L_18770449_DEL [dm3] 2L_18770449_DEL [dm6]	TA	T	5.130e^-4	0.988	INTRON ham
3L	2694702	3L_2694702_SNP [dm3] 3L_2694702_SNP [dm6]	A	G	5.132e^-4	0.988	INTRON Fife
3R	14652999	3R_14652999_SNP [dm3] 3R_18827277_SNP [dm6]	T	G	5.132e^-4	0.988	INTRON CG18208
3L	8583839	3L_8583839_SNP [dm3] 3L_8590739_SNP [dm6]	C	T	5.133e^-4	0.988	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo
3R	6103230	3R_6103230_SNP [dm3] 3R_10277508_SNP [dm6]	C	A	5.137e^-4	0.988	DOWNSTREAM tRNA:S2b:86A INTRON CG43143
3L	3001863	3L_3001863_SNP [dm3] 3L_3001863_SNP [dm6]	C	A	5.142e^-4	0.988	UTR_5_PRIME FMRFaR UPSTREAM FMRFaR
2R	14648858	2R_14648858_SNP [dm3] 2R_18761353_SNP [dm6]	T	G	5.143e^-4	0.988	UPSTREAM Mctp & 1 other INTERGENIC
2L	3422327	2L_3422327_SNP [dm3] 2L_3422327_SNP [dm6]	T	C	5.144e^-4	0.988	INTRON pgant2
3L	1746065	3L_1746065_SNP [dm3] 3L_1746065_SNP [dm6]	G	A	5.153e^-4	0.988	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	8198339	3L_8198339_SNP [dm3] 3L_8205239_SNP [dm6]	C	T	5.166e^-4	0.988	INTERGENIC
2L	5816066	2L_5816066_SNP [dm3] 2L_5816066_SNP [dm6]	T	C	5.169e^-4	0.988	INTERGENIC
3R	18371390	3R_18371390_SNP [dm3] 3R_22545668_SNP [dm6]	A	T	5.170e^-4	0.988	INTRON AdipoR
X	12004350	X_12004350_SNP [dm3] X_12110317_SNP [dm6]	T	G	5.182e^-4	0.988	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
2L	5918051	2L_5918051_SNP [dm3] 2L_5918051_SNP [dm6]	G	C	5.198e^-4	0.988	SYNONYMOUS_CODING bchs
3L	13623907	3L_13623907_SNP [dm3] 3L_13630807_SNP [dm6]	C	T	5.202e^-4	0.988	INTRON bru-3
2R	16606081	2R_16606081_SNP [dm3] 2R_20718576_SNP [dm6]	G	T	5.207e^-4	0.988	INTRON dpr
3L	18503519	3L_18503519_INS [dm3] 3L_18510419_INS [dm6]	G	GGGT	5.209e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	4339207	3L_4339207_SNP [dm3] 3L_4339207_SNP [dm6]	C	T	5.210e^-4	0.988	INTRON Cip4
3L	11037674	3L_11037674_SNP [dm3] 3L_11044574_SNP [dm6]	G	T	5.218e^-4	0.988	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
3R	10270708	3R_10270708_SNP [dm3] 3R_14444986_SNP [dm6]	A	C	5.221e^-4	0.988	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10707646	2L_10707646_SNP [dm3] 2L_10707646_SNP [dm6]	T	C	5.224e^-4	0.988	INTRON Lip2
2R	8078684	2R_8078684_SNP [dm3] 2R_12191179_SNP [dm6]	A	G	5.230e^-4	0.988	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3L	2899588	3L_2899588_SNP [dm3] 3L_2899588_SNP [dm6]	A	G	5.233e^-4	0.988	INTRON Shab
2R	8101395	2R_8101395_SNP [dm3] 2R_12213890_SNP [dm6]	C	A	5.255e^-4	0.988	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	899929	2L_899929_SNP [dm3] 2L_899929_SNP [dm6]	T	A	5.260e^-4	0.988	NON_SYNONYMOUS_CODING Lsp1beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13306317	X_13306317_SNP [dm3] X_13412284_SNP [dm6]	G	A	5.295e^-4	0.988	SYNONYMOUS_CODING CG1998 UPSTREAM CG1998 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18208450	3L_18208450_SNP [dm3] 3L_18215350_SNP [dm6]	A	C	5.296e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	5332968	3L_5332968_SNP [dm3] 3L_5339868_SNP [dm6]	A	T	5.307e^-4	0.988	INTERGENIC
3R	10213801	3R_10213801_SNP [dm3] 3R_14388079_SNP [dm6]	C	T	5.316e^-4	0.988	INTERGENIC
2R	8125497	2R_8125497_SNP [dm3] 2R_12237992_SNP [dm6]	T	C	5.331e^-4	0.988	INTERGENIC
X	6268170	X_6268170_SNP [dm3] X_6374137_SNP [dm6]	C	A	5.338e^-4	0.988	INTERGENIC
3R	18768761	3R_18768761_SNP [dm3] 3R_22943039_SNP [dm6]	A	T	5.338e^-4	0.988	INTRON klg
2L	8901240	2L_8901240_SNP [dm3] 2L_8901240_SNP [dm6]	C	T	5.338e^-4	0.988	INTRON CG34398
3L	18631804	3L_18631804_SNP [dm3] 3L_18638704_SNP [dm6]	C	T	5.349e^-4	0.988	INTRON MYPT-75D
2R	14641630	2R_14641630_SNP [dm3] 2R_18754125_SNP [dm6]	G	T	5.351e^-4	0.988	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2
3L	2028735	3L_2028735_SNP [dm3] 3L_2028735_SNP [dm6]	C	A	5.353e^-4	0.988	DOWNSTREAM CG34259 INTERGENIC
3L	7183239	3L_7183239_SNP [dm3] 3L_7190139_SNP [dm6]	T	G	5.371e^-4	0.988	UPSTREAM Dscam2 INTERGENIC
3L	20386809	3L_20386809_SNP [dm3] 3L_20393709_SNP [dm6]	C	G	5.375e^-4	0.988	UPSTREAM CG33969 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3076530	3L_3076530_SNP [dm3] 3L_3076530_SNP [dm6]	A	G	5.375e^-4	0.988	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	13728545	3L_13728545_SNP [dm3] 3L_13735445_SNP [dm6]	C	T	5.380e^-4	0.988	INTRON bru-3
3R	18371228	3R_18371228_SNP [dm3] 3R_22545506_SNP [dm6]	T	A	5.387e^-4	0.988	INTRON AdipoR
2L	7040903	2L_7040903_SNP [dm3] 2L_7040903_SNP [dm6]	A	T	5.391e^-4	0.988	INTRON milt
3L	2787407	3L_2787407_SNP [dm3] 3L_2787407_SNP [dm6]	G	A	5.393e^-4	0.988	UTR_3_PRIME CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22231103	3R_22231103_DEL [dm3] 3R_26405381_DEL [dm6]	TT	T	5.400e^-4	0.988	INTERGENIC
2R	4427762	2R_4427762_SNP [dm3] 2R_8540257_SNP [dm6]	G	C	5.402e^-4	0.988	INTERGENIC
2R	8109897	2R_8109897_SNP [dm3] 2R_12222392_SNP [dm6]	G	A	5.415e^-4	0.988	INTERGENIC
3L	18489303	3L_18489303_INS [dm3] 3L_18496203_INS [dm6]	A	ACA	5.419e^-4	0.988	INTRON AstC-R2
3L	7379357	3L_7379357_SNP [dm3] 3L_7386257_SNP [dm6]	T	C	5.420e^-4	0.988	SYNONYMOUS_CODING CG8564 DOWNSTREAM smid	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	17747224	2L_17747224_SNP [dm3] 2L_17747224_SNP [dm6]	A	T	5.431e^-4	0.988	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	5630257	3L_5630257_SNP [dm3] 3L_5637157_SNP [dm6]	A	G	5.433e^-4	0.988	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26659932	3R_26659932_DEL [dm3] 3R_30834210_DEL [dm6]	ATTTA	A	5.447e^-4	0.988	INTRON CG15544
2R	8125489	2R_8125489_SNP [dm3] 2R_12237984_SNP [dm6]	C	T	5.449e^-4	0.988	INTERGENIC
2L	7063008	2L_7063008_INS [dm3] 2L_7063008_INS [dm6]	A	AA	5.449e^-4	0.988	UTR_3_PRIME Mnn1 UPSTREAM Sem1 DOWNSTREAM Mnn1
3R	17538070	3R_17538070_SNP [dm3] 3R_21712348_SNP [dm6]	G	A	5.452e^-4	0.988	INTRON CG31176
3R	12471466	3R_12471466_SNP [dm3] 3R_16645744_SNP [dm6]	T	C	5.457e^-4	0.988	SYNONYMOUS_CODING CG10324 DOWNSTREAM CG10326
2L	1628272	2L_1628272_SNP [dm3] 2L_1628272_SNP [dm6]	A	T	5.462e^-4	0.988	INTERGENIC
2R	1608875	2R_1608875_SNP [dm3] 2R_5721370_SNP [dm6]	T	G	5.468e^-4	0.988	INTRON ap	transposable element FlyBase
3L	2694730	3L_2694730_SNP [dm3] 3L_2694730_SNP [dm6]	T	C	5.471e^-4	0.988	INTRON Fife
3L	15495117	3L_15495117_SNP [dm3] 3L_15502017_SNP [dm6]	A	C	5.497e^-4	0.988	INTRON CG7272	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8209844	3R_8209844_SNP [dm3] 3R_12384122_SNP [dm6]	C	T	5.497e^-4	0.988	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	13218217	2L_13218217_SNP [dm3] 2L_13218217_SNP [dm6]	G	A	5.499e^-4	0.988	SYNONYMOUS_CODING CG9426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11208215	2L_11208215_SNP [dm3] 2L_11208215_SNP [dm6]	T	A	5.508e^-4	0.988	INTERGENIC
2R	8121501	2R_8121501_SNP [dm3] 2R_12233996_SNP [dm6]	G	A	5.525e^-4	0.988	EXON CR44313
2L	2946793	2L_2946793_SNP [dm3] 2L_2946793_SNP [dm6]	T	A	5.533e^-4	0.988	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_chinmo
3L	1746064	3L_1746064_SNP [dm3] 3L_1746064_SNP [dm6]	A	T	5.534e^-4	0.988	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	7894844	3L_7894844_SNP [dm3] 3L_7901744_SNP [dm6]	C	T	5.543e^-4	0.988	SYNONYMOUS_CODING pbl
2R	8122437	2R_8122437_SNP [dm3] 2R_12234932_SNP [dm6]	A	T	5.545e^-4	0.988	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	13322480	X_13322480_SNP [dm3] X_13428447_SNP [dm6]	A	G	5.553e^-4	0.988	INTERGENIC
3L	8798491	3L_8798491_SNP [dm3] 3L_8805391_SNP [dm6]	C	T	5.553e^-4	0.988	SYNONYMOUS_CODING CG34427 DOWNSTREAM CG13312	TF binding site mE1_TFBS_chinmo
3L	12973901	3L_12973901_MNP [dm3] 3L_12980801_MNP [dm6]	CCTCCA	TGGAGG	5.553e^-4	0.988	INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

Cuticul_7_11_C31_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results