DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.962e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.001048

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2034 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8499821	3R_8499821_SNP [dm3] 3R_12674099_SNP [dm6]	T	A	8.192e^-7	0.601	UPSTREAM CG6188 DOWNSTREAM CG14395 INTERGENIC
3L	3917688	3L_3917688_SNP [dm3] 3L_3917688_SNP [dm6]	A	T	1.289e^-6	0.601	INTRON Eip63F-1
2R	18594193	2R_18594193_SNP [dm3] 2R_22706688_SNP [dm6]	C	A	1.601e^-6	0.601	UPSTREAM Obp58d & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
X	14239790	X_14239790_SNP [dm3] X_14345757_SNP [dm6]	T	C	2.593e^-6	0.601	INTRON dpr8
3R	19209195	3R_19209195_SNP [dm3] 3R_23383473_SNP [dm6]	A	G	2.883e^-6	0.601	UPSTREAM CG4393 INTRON CG4393
3R	8352911	3R_8352911_SNP [dm3] 3R_12527189_SNP [dm6]	T	C	3.035e^-6	0.601	INTRON Octbeta3R & 1 other
2L	4466600	2L_4466600_SNP [dm3] 2L_4466600_SNP [dm6]	G	A	3.209e^-6	0.601	SYNONYMOUS_CODING CG17840	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8326817	3R_8326817_SNP [dm3] 3R_12501095_SNP [dm6]	G	C	3.480e^-6	0.601	INTERGENIC
2L	14249495	2L_14249495_SNP [dm3] 2L_14249495_SNP [dm6]	T	A	3.706e^-6	0.601	INTERGENIC
3R	8353044	3R_8353044_SNP [dm3] 3R_12527322_SNP [dm6]	C	T	3.750e^-6	0.601	INTRON Octbeta3R & 1 other
X	5889309	X_5889309_SNP [dm3] X_5995276_SNP [dm6]	A	G	3.846e^-6	0.601	INTERGENIC
2R	11137567	2R_11137567_INS [dm3] 2R_15250062_INS [dm6]	G	GG	3.974e^-6	0.601	INTRON scb	TF binding site mE1_TFBS_cad
3R	13117234	3R_13117234_DEL [dm3] 3R_17291512_DEL [dm6]	GACGGCG	G	4.900e^-6	0.601	INTERGENIC
2L	4466816	2L_4466816_SNP [dm3] 2L_4466816_SNP [dm6]	C	T	5.042e^-6	0.601	SYNONYMOUS_CODING CG17840	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14237975	X_14237975_SNP [dm3] X_14343942_SNP [dm6]	T	C	5.167e^-6	0.601	INTRON dpr8
2L	4466759	2L_4466759_SNP [dm3] 2L_4466759_SNP [dm6]	C	T	5.489e^-6	0.601	SYNONYMOUS_CODING CG17840	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2593373	3L_2593373_SNP [dm3] 3L_2593373_SNP [dm6]	A	T	5.876e^-6	0.601	INTRON dos	TF binding site mE1_TFBS_cad
2L	14865403	2L_14865403_SNP [dm3] 2L_14865403_SNP [dm6]	C	A	6.002e^-6	0.601	INTERGENIC
3R	8352983	3R_8352983_SNP [dm3] 3R_12527261_SNP [dm6]	T	A	6.180e^-6	0.601	INTRON Octbeta3R & 1 other
2L	14846113	2L_14846113_SNP [dm3] 2L_14846113_SNP [dm6]	T	C	6.471e^-6	0.601	SYNONYMOUS_CODING CG15279
3R	19208406	3R_19208406_SNP [dm3] 3R_23382684_SNP [dm6]	A	T	7.041e^-6	0.601	UTR_5_PRIME CG4393 INTRON CG4393
3R	9133366	3R_9133366_SNP [dm3] 3R_13307644_SNP [dm6]	C	T	7.363e^-6	0.601	INTRON CG32473
3R	8939471	3R_8939471_SNP [dm3] 3R_13113749_SNP [dm6]	T	G	7.373e^-6	0.601	INTRON timeout
2L	12090683	2L_12090683_INS [dm3] 2L_12090683_INS [dm6]	G	GTTGG	7.824e^-6	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2R	16287733	2R_16287733_DEL [dm3] 2R_20400228_DEL [dm6]	GA	G	9.164e^-6	0.677	INTERGENIC
2L	9817543	2L_9817543_SNP [dm3] 2L_9817543_SNP [dm6]	C	T	1.030e^-5	0.677	INTRON nAChRalpha6
3R	9376566	3R_9376566_SNP [dm3] 3R_13550844_SNP [dm6]	G	T	1.059e^-5	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14497885	3L_14497885_SNP [dm3] 3L_14504785_SNP [dm6]	A	G	1.085e^-5	0.677	INTRON bbg
3R	8560723	3R_8560723_SNP [dm3] 3R_12735001_SNP [dm6]	C	A	1.113e^-5	0.677	INTERGENIC
3L	14968008	3L_14968008_SNP [dm3] 3L_14974908_SNP [dm6]	T	C	1.129e^-5	0.677	UTR_5_PRIME Ocho UPSTREAM Ocho	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4466780	2L_4466780_SNP [dm3] 2L_4466780_SNP [dm6]	G	C	1.172e^-5	0.677	SYNONYMOUS_CODING CG17840	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10340499	2L_10340499_SNP [dm3] 2L_10340499_SNP [dm6]	G	T	1.204e^-5	0.677	INTRON SamDC	TF binding site BDTNP1_TFBS_dl
2L	4466684	2L_4466684_SNP [dm3] 2L_4466684_SNP [dm6]	T	C	1.226e^-5	0.677	SYNONYMOUS_CODING CG17840	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1430398	2L_1430398_SNP [dm3] 2L_1430398_SNP [dm6]	T	C	1.256e^-5	0.677	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	9963512	3R_9963512_SNP [dm3] 3R_14137790_SNP [dm6]	C	A	1.263e^-5	0.677	INTERGENIC
2L	18819477	2L_18819477_SNP [dm3] 2L_18819477_SNP [dm6]	T	A	1.400e^-5	0.689	INTRON CG17324
2R	17311468	2R_17311468_SNP [dm3] 2R_21423963_SNP [dm6]	A	C	1.459e^-5	0.689	INTRON Sdc
3R	8939440	3R_8939440_SNP [dm3] 3R_13113718_SNP [dm6]	C	T	1.523e^-5	0.689	INTRON timeout
3L	6395968	3L_6395968_SNP [dm3] 3L_6402868_SNP [dm6]	A	C	1.531e^-5	0.689	INTRON CG42747
3L	14968105	3L_14968105_SNP [dm3] 3L_14975005_SNP [dm6]	A	G	1.593e^-5	0.689	UTR_5_PRIME Ocho UPSTREAM Ocho	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12222176	2R_12222176_SNP [dm3] 2R_16334671_SNP [dm6]	A	T	1.605e^-5	0.689	UPSTREAM Vha44 INTRON Vha44
3R	13117210	3R_13117210_SNP [dm3] 3R_17291488_SNP [dm6]	A	C	1.608e^-5	0.689	INTERGENIC
2L	4466750	2L_4466750_SNP [dm3] 2L_4466750_SNP [dm6]	G	A	1.667e^-5	0.689	SYNONYMOUS_CODING CG17840	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6398207	3L_6398207_SNP [dm3] 3L_6405107_SNP [dm6]	G	A	1.712e^-5	0.689	INTRON CG42747
2L	14865404	2L_14865404_SNP [dm3] 2L_14865404_SNP [dm6]	C	A	1.716e^-5	0.689	INTERGENIC
3R	9133338	3R_9133338_SNP [dm3] 3R_13307616_SNP [dm6]	A	G	1.738e^-5	0.689	INTRON CG32473
2L	14854111	2L_14854111_SNP [dm3] 2L_14854111_SNP [dm6]	G	T	1.787e^-5	0.689	INTERGENIC
2R	12222178	2R_12222178_INS [dm3] 2R_16334673_INS [dm6]	A	TAT	1.806e^-5	0.689	UPSTREAM Vha44 INTRON Vha44
3L	14497978	3L_14497978_SNP [dm3] 3L_14504878_SNP [dm6]	A	C	1.809e^-5	0.689	INTRON bbg
2L	15094942	2L_15094942_SNP [dm3] 2L_15094942_SNP [dm6]	C	T	1.838e^-5	0.689	SYNONYMOUS_CODING CG15270
3R	8562155	3R_8562155_SNP [dm3] 3R_12736433_SNP [dm6]	C	T	1.925e^-5	0.703	INTERGENIC
2L	1712799	2L_1712799_SNP [dm3] 2L_1712799_SNP [dm6]	C	T	1.993e^-5	0.703	SYNONYMOUS_CODING frtz	TF binding site mE1_TFBS_chinmo
2L	1978570	2L_1978570_SNP [dm3] 2L_1978570_SNP [dm6]	T	G	2.011e^-5	0.703	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20371274	2R_20371274_SNP [dm3] 2R_24483751_SNP [dm6]	T	C	2.024e^-5	0.703	INTRON CG13579
2L	19754969	2L_19754969_SNP [dm3] 2L_19754969_SNP [dm6]	A	C	2.071e^-5	0.706	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13533731	2R_13533731_SNP [dm3] 2R_17646226_SNP [dm6]	A	T	2.110e^-5	0.707	DOWNSTREAM CCHa1-R INTERGENIC
2R	16287739	2R_16287739_SNP [dm3] 2R_20400234_SNP [dm6]	G	C	2.276e^-5	0.737	INTERGENIC
X	19475588	X_19475588_SNP [dm3] X_19581555_SNP [dm6]	T	C	2.278e^-5	0.737	SYNONYMOUS_CODING CG14218	TF binding site mE1_TFBS_chinmo
3L	11923088	3L_11923088_SNP [dm3] 3L_11929988_SNP [dm6]	A	T	2.342e^-5	0.745	INTRON CG44837 & 1 other	TF binding site mE1_TFBS_cad
2R	19409356	2R_19409356_SNP [dm3] 2R_23521833_SNP [dm6]	G	A	2.506e^-5	0.764	INTRON RabX1
2L	3227960	2L_3227960_SNP [dm3] 2L_3227960_SNP [dm6]	C	A	2.588e^-5	0.764	INTERGENIC
3L	6428359	3L_6428359_SNP [dm3] 3L_6435259_SNP [dm6]	C	A	2.599e^-5	0.764	INTRON CG42747	TF binding site mE1_TFBS_cad
2L	13349565	2L_13349565_SNP [dm3] 2L_13349565_SNP [dm6]	A	T	2.608e^-5	0.764	DOWNSTREAM CG9395 & 1 other INTERGENIC
2L	900575	2L_900575_SNP [dm3] 2L_900575_SNP [dm6]	C	G	2.611e^-5	0.764	SYNONYMOUS_CODING Lsp1beta DOWNSTREAM snRNA:U1:21D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5889288	X_5889288_DEL [dm3] X_5995255_DEL [dm6]	CA	C	2.701e^-5	0.764	INTERGENIC
3R	9111567	3R_9111567_SNP [dm3] 3R_13285845_SNP [dm6]	G	A	2.837e^-5	0.764	INTRON CG15888	TF binding site mE1_TFBS_cad
3L	741091	3L_741091_DEL [dm3] 3L_741091_DEL [dm6]	GCAAATCG	G	2.853e^-5	0.764	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	8281812	2L_8281812_SNP [dm3] 2L_8281812_SNP [dm6]	T	A	2.886e^-5	0.764	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15649190	2L_15649190_SNP [dm3] 2L_15649190_SNP [dm6]	G	A	2.891e^-5	0.764	SYNONYMOUS_CODING CG4587
2R	15144925	2R_15144925_SNP [dm3] 2R_19257420_SNP [dm6]	T	C	2.916e^-5	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2R	12046060	2R_12046060_SNP [dm3] 2R_16158555_SNP [dm6]	T	C	2.942e^-5	0.764	SYNONYMOUS_CODING CG10734 INTRON lbk
3R	25473660	3R_25473660_SNP [dm3] 3R_29647938_SNP [dm6]	T	A	2.943e^-5	0.764	INTRON Dop1R2
X	5889329	X_5889329_SNP [dm3] X_5995296_SNP [dm6]	C	A	2.974e^-5	0.764	INTERGENIC
X	7965885	X_7965885_SNP [dm3] X_8071852_SNP [dm6]	C	T	3.024e^-5	0.764	SYNONYMOUS_CODING Upf2
3R	25441132	3R_25441132_SNP [dm3] 3R_29615410_SNP [dm6]	G	A	3.079e^-5	0.764	INTRON alph
3L	6395533	3L_6395533_SNP [dm3] 3L_6402433_SNP [dm6]	G	A	3.118e^-5	0.764	INTRON CG42747
2R	20135110	2R_20135110_SNP [dm3] 2R_24247587_SNP [dm6]	C	G	3.163e^-5	0.764	INTRON nord
3L	12541416	3L_12541416_SNP [dm3] 3L_12548316_SNP [dm6]	G	A	3.207e^-5	0.764	INTRON sowah
2L	1409815	2L_1409815_SNP [dm3] 2L_1409815_SNP [dm6]	A	G	3.240e^-5	0.764	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9963234	3R_9963234_SNP [dm3] 3R_14137512_SNP [dm6]	T	A	3.269e^-5	0.764	INTERGENIC
X	12808001	X_12808001_SNP [dm3] X_12913968_SNP [dm6]	G	A	3.332e^-5	0.764	UPSTREAM CR45626 DOWNSTREAM CR45625 INTERGENIC
X	19401252	X_19401252_SNP [dm3] X_19507219_SNP [dm6]	C	T	3.362e^-5	0.764	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19756932	2L_19756932_SNP [dm3] 2L_19756932_SNP [dm6]	T	C	3.380e^-5	0.764	UPSTREAM CG10631 DOWNSTREAM CG10628 INTERGENIC
3R	6461000	3R_6461000_SNP [dm3] 3R_10635278_SNP [dm6]	C	A	3.429e^-5	0.766	INTRON hth
3L	1199805	3L_1199805_SNP [dm3] 3L_1199805_SNP [dm6]	C	T	3.628e^-5	0.799	UPSTREAM mwh DOWNSTREAM Aplip1 INTERGENIC
3R	23539635	3R_23539635_SNP [dm3] 3R_27713913_SNP [dm6]	A	T	3.663e^-5	0.799	INTERGENIC
3L	12541404	3L_12541404_SNP [dm3] 3L_12548304_SNP [dm6]	T	A	3.813e^-5	0.808	INTRON sowah
3R	17916325	3R_17916325_SNP [dm3] 3R_22090603_SNP [dm6]	G	T	3.900e^-5	0.808	INTRON CG5778
2R	18594177	2R_18594177_SNP [dm3] 2R_22706672_SNP [dm6]	T	C	3.955e^-5	0.808	UTR_5_PRIME Obp58c UPSTREAM Obp58d	TF binding site mE1_TFBS_inv
3R	23529742	3R_23529742_SNP [dm3] 3R_27704020_SNP [dm6]	A	G	3.979e^-5	0.808	SYNONYMOUS_CODING CG12428 DOWNSTREAM btz	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9053529	3L_9053529_SNP [dm3] 3L_9060429_SNP [dm6]	C	G	4.002e^-5	0.808	INTRON Argk
2R	17782897	2R_17782897_SNP [dm3] 2R_21895392_SNP [dm6]	T	G	4.053e^-5	0.808	INTRON Fili
3L	16216480	3L_16216480_SNP [dm3] 3L_16223380_SNP [dm6]	C	T	4.079e^-5	0.808	INTERGENIC
3L	3917781	3L_3917781_SNP [dm3] 3L_3917781_SNP [dm6]	G	T	4.165e^-5	0.808	INTRON Eip63F-1
3R	9076306	3R_9076306_SNP [dm3] 3R_13250584_SNP [dm6]	T	A	4.207e^-5	0.808	INTRON Ace
3R	13891325	3R_13891325_SNP [dm3] 3R_18065603_SNP [dm6]	G	T	4.260e^-5	0.808	INTERGENIC
2R	10997113	2R_10997113_SNP [dm3] 2R_15109608_SNP [dm6]	T	G	4.262e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7634999	3L_7634999_MNP [dm3] 3L_7641899_MNP [dm6]	AAG	CTT	4.279e^-5	0.808	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2R	13885753	2R_13885753_SNP [dm3] 2R_17998248_SNP [dm6]	G	A	4.283e^-5	0.808	INTRON dpr13
3L	5227501	3L_5227501_SNP [dm3] 3L_5234401_SNP [dm6]	T	A	4.309e^-5	0.808	UPSTREAM CG4669 INTRON shep
3L	6990160	3L_6990160_SNP [dm3] 3L_6997060_SNP [dm6]	T	C	4.583e^-5	0.836	INTERGENIC
3L	619506	3L_619506_SNP [dm3] 3L_619506_SNP [dm6]	G	A	4.641e^-5	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
X	19470469	X_19470469_SNP [dm3] X_19576436_SNP [dm6]	A	G	4.665e^-5	0.836	INTRON Tao
2L	12395189	2L_12395189_SNP [dm3] 2L_12395189_SNP [dm6]	A	G	4.667e^-5	0.836	INTRON bru-2
3R	9076302	3R_9076302_SNP [dm3] 3R_13250580_SNP [dm6]	A	T	4.700e^-5	0.836	INTRON Ace
3L	5227474	3L_5227474_SNP [dm3] 3L_5234374_SNP [dm6]	T	G	4.821e^-5	0.836	UPSTREAM CG4669 INTRON shep
2R	13885772	2R_13885772_SNP [dm3] 2R_17998267_SNP [dm6]	C	T	4.846e^-5	0.836	INTRON dpr13
X	20900636	X_20900636_SNP [dm3] X_21029609_SNP [dm6]	T	A	4.853e^-5	0.836	UTR_3_PRIME CG1529 DOWNSTREAM CG1529
2R	11774303	2R_11774303_SNP [dm3] 2R_15886798_SNP [dm6]	T	A	4.857e^-5	0.836	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13953130	2R_13953130_SNP [dm3] 2R_18065625_SNP [dm6]	T	C	4.916e^-5	0.838	INTRON CG34386
2R	11137578	2R_11137578_SNP [dm3] 2R_15250073_SNP [dm6]	A	T	4.983e^-5	0.838	INTRON scb	TF binding site mE1_TFBS_cad
X	4007327	X_4007327_SNP [dm3] X_4113294_SNP [dm6]	G	A	5.016e^-5	0.838	SYNONYMOUS_CODING Nsun2 UPSTREAM dgt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14293045	2R_14293045_SNP [dm3] 2R_18405540_SNP [dm6]	C	G	5.088e^-5	0.838	UPSTREAM GstE6 DOWNSTREAM GstE5 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2R	14837687	2R_14837687_SNP [dm3] 2R_18950182_SNP [dm6]	T	C	5.094e^-5	0.838	INTRON sano
2L	5773552	2L_5773552_SNP [dm3] 2L_5773552_SNP [dm6]	A	C	5.258e^-5	0.846	START_GAINED CG9171 UTR_5_PRIME CG9171 INTRON CG9171
2R	13951279	2R_13951279_SNP [dm3] 2R_18063774_SNP [dm6]	A	C	5.282e^-5	0.846	INTRON CG34386
2R	14962574	2R_14962574_SNP [dm3] 2R_19075069_SNP [dm6]	T	C	5.290e^-5	0.846	INTRON 5-HT1A
2L	5774054	2L_5774054_SNP [dm3] 2L_5774054_SNP [dm6]	A	G	5.347e^-5	0.846	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19208501	3R_19208501_SNP [dm3] 3R_23382779_SNP [dm6]	T	C	5.431e^-5	0.846	UTR_5_PRIME CG4393 INTRON CG4393
3R	9111565	3R_9111565_SNP [dm3] 3R_13285843_SNP [dm6]	G	C	5.445e^-5	0.846	INTRON CG15888	TF binding site mE1_TFBS_cad
3R	10410451	3R_10410451_SNP [dm3] 3R_14584729_SNP [dm6]	C	T	5.469e^-5	0.846	INTRON stumps
3R	9076295	3R_9076295_DEL [dm3] 3R_13250573_DEL [dm6]	CGATC	C	5.564e^-5	0.846	INTRON Ace
3R	8566382	3R_8566382_SNP [dm3] 3R_12740660_SNP [dm6]	G	A	5.591e^-5	0.846	SYNONYMOUS_CODING CG5724	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17440456	3L_17440456_SNP [dm3] 3L_17447356_SNP [dm6]	G	A	5.601e^-5	0.846	INTRON CG18265
3R	8939439	3R_8939439_SNP [dm3] 3R_13113717_SNP [dm6]	A	T	5.700e^-5	0.846	INTRON timeout
2R	11856870	2R_11856870_SNP [dm3] 2R_15969365_SNP [dm6]	C	T	5.716e^-5	0.846	SYNONYMOUS_CODING Strn-Mlck UPSTREAM Strn-Mlck
2L	4466852	2L_4466852_SNP [dm3] 2L_4466852_SNP [dm6]	T	C	5.731e^-5	0.846	SYNONYMOUS_CODING CG17840	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19759777	2L_19759777_SNP [dm3] 2L_19759777_SNP [dm6]	A	T	5.783e^-5	0.847	NON_SYNONYMOUS_CODING CG10463	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15013905	2L_15013905_SNP [dm3] 2L_15013905_SNP [dm6]	T	C	5.880e^-5	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12573381	2R_12573381_SNP [dm3] 2R_16685876_SNP [dm6]	C	A	5.919e^-5	0.848	INTRON CG30463
3L	14014199	3L_14014199_SNP [dm3] 3L_14021099_SNP [dm6]	A	G	5.943e^-5	0.848	UTR_3_PRIME ptip DOWNSTREAM upSET
2R	13885713	2R_13885713_SNP [dm3] 2R_17998208_SNP [dm6]	A	G	5.980e^-5	0.848	INTRON dpr13
X	19475384	X_19475384_SNP [dm3] X_19581351_SNP [dm6]	A	G	6.087e^-5	0.848	SYNONYMOUS_CODING CG14218	TF binding site mE1_TFBS_chinmo
3L	15208289	3L_15208289_SNP [dm3] 3L_15215189_SNP [dm6]	C	T	6.112e^-5	0.848	INTERGENIC
3R	13117048	3R_13117048_SNP [dm3] 3R_17291326_SNP [dm6]	G	A	6.195e^-5	0.848	INTERGENIC
X	14886658	X_14886658_SNP [dm3] X_14992625_SNP [dm6]	C	T	6.197e^-5	0.848	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13953129	2R_13953129_SNP [dm3] 2R_18065624_SNP [dm6]	G	A	6.218e^-5	0.848	INTRON CG34386
2L	12557951	2L_12557951_SNP [dm3] 2L_12557951_SNP [dm6]	G	A	6.307e^-5	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19122571	2R_19122571_SNP [dm3] 2R_23235048_SNP [dm6]	T	C	6.404e^-5	0.848	INTERGENIC
3L	10325118	3L_10325118_SNP [dm3] 3L_10332018_SNP [dm6]	C	G	6.433e^-5	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv
3L	16216518	3L_16216518_DEL [dm3] 3L_16223418_DEL [dm6]	TT	T	6.452e^-5	0.848	INTERGENIC
2L	10340513	2L_10340513_SNP [dm3] 2L_10340513_SNP [dm6]	T	A	6.473e^-5	0.848	INTRON SamDC	TF binding site BDTNP1_TFBS_dl
X	16082635	X_16082635_SNP [dm3] X_16188602_SNP [dm6]	A	T	6.569e^-5	0.848	INTERGENIC
3L	16216473	3L_16216473_SNP [dm3] 3L_16223373_SNP [dm6]	T	A	6.627e^-5	0.848	INTERGENIC
3L	5227481	3L_5227481_SNP [dm3] 3L_5234381_SNP [dm6]	A	T	6.672e^-5	0.848	UPSTREAM CG4669 INTRON shep
2R	8854994	2R_8854994_SNP [dm3] 2R_12967489_SNP [dm6]	G	C	6.693e^-5	0.848	NON_SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	900599	2L_900599_SNP [dm3] 2L_900599_SNP [dm6]	C	T	6.726e^-5	0.848	SYNONYMOUS_CODING Lsp1beta DOWNSTREAM snRNA:U1:21D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9963236	3R_9963236_SNP [dm3] 3R_14137514_SNP [dm6]	C	T	6.735e^-5	0.848	INTERGENIC
2L	2879719	2L_2879719_SNP [dm3] 2L_2879719_SNP [dm6]	G	A	6.738e^-5	0.848	SYNONYMOUS_CODING betaggt-II DOWNSTREAM CG31950 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	19755073	2L_19755073_DEL [dm3] 2L_19755073_DEL [dm6]	CATGC	C	6.787e^-5	0.849	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18712375	2R_18712375_SNP [dm3] 2R_22824852_SNP [dm6]	A	C	6.836e^-5	0.849	UPSTREAM CG30274 & 1 other INTRON CG42284
2R	19998303	2R_19998303_SNP [dm3] 2R_24110780_SNP [dm6]	T	A	6.925e^-5	0.849	INTRON CG4049
3L	7599835	3L_7599835_SNP [dm3] 3L_7606735_SNP [dm6]	G	T	7.130e^-5	0.849	INTRON CG33275
3L	6435905	3L_6435905_SNP [dm3] 3L_6442805_SNP [dm6]	G	T	7.146e^-5	0.849	INTRON CG42747	TF binding site mE1_TFBS_cad
3L	16216494	3L_16216494_SNP [dm3] 3L_16223394_SNP [dm6]	C	G	7.171e^-5	0.849	INTERGENIC
3L	7977568	3L_7977568_DEL [dm3] 3L_7984468_DEL [dm6]	TT	G	7.183e^-5	0.849	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	7.185e^-5	0.849	INTRON Octbeta3R
X	9272888	X_9272888_SNP [dm3] X_9378855_SNP [dm6]	T	A	7.200e^-5	0.849	INTRON mgl
X	16163619	X_16163619_SNP [dm3] X_16269586_SNP [dm6]	A	T	7.232e^-5	0.849	INTRON kat80
3L	14498020	3L_14498020_SNP [dm3] 3L_14504920_SNP [dm6]	G	A	7.246e^-5	0.849	INTRON bbg
X	19470603	X_19470603_SNP [dm3] X_19576570_SNP [dm6]	T	A	7.359e^-5	0.856	INTRON Tao
X	12414503	X_12414503_SNP [dm3] X_12520470_SNP [dm6]	C	T	7.394e^-5	0.856	SYNONYMOUS_CODING CG43921	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6396334	3L_6396334_SNP [dm3] 3L_6403234_SNP [dm6]	G	C	7.518e^-5	0.865	INTRON CG42747
3L	8021528	3L_8021528_SNP [dm3] 3L_8028428_SNP [dm6]	G	T	7.597e^-5	0.866	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad
2L	14846374	2L_14846374_SNP [dm3] 2L_14846374_SNP [dm6]	C	T	7.667e^-5	0.866	SYNONYMOUS_CODING CG15279
3R	9963311	3R_9963311_SNP [dm3] 3R_14137589_SNP [dm6]	C	T	7.669e^-5	0.866	INTERGENIC
2R	7802880	2R_7802880_SNP [dm3] 2R_11915375_SNP [dm6]	C	T	7.954e^-5	0.879	INTERGENIC
2L	14873016	2L_14873016_SNP [dm3] 2L_14873016_SNP [dm6]	C	T	8.024e^-5	0.879	UPSTREAM CG4480 INTERGENIC
3L	1562371	3L_1562371_SNP [dm3] 3L_1562371_SNP [dm6]	G	T	8.215e^-5	0.879	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20685685	2L_20685685_SNP [dm3] 2L_20685685_SNP [dm6]	T	A	8.223e^-5	0.879	UTR_3_PRIME Hr38
3L	18375213	3L_18375213_SNP [dm3] 3L_18382113_SNP [dm6]	A	C	8.388e^-5	0.879	INTERGENIC
2R	13533847	2R_13533847_SNP [dm3] 2R_17646342_SNP [dm6]	C	T	8.395e^-5	0.879	DOWNSTREAM CCHa1-R INTERGENIC
3L	17520653	3L_17520653_SNP [dm3] 3L_17527553_SNP [dm6]	C	T	8.517e^-5	0.879	SYNONYMOUS_CODING Edc3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2L	15649349	2L_15649349_SNP [dm3] 2L_15649349_SNP [dm6]	G	A	8.519e^-5	0.879	SPLICE_SITE_REGION CG4587 INTRON CG4587
3R	19207524	3R_19207524_SNP [dm3] 3R_23381802_SNP [dm6]	T	G	8.564e^-5	0.879	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3835443	2L_3835443_SNP [dm3] 2L_3835443_SNP [dm6]	T	C	8.581e^-5	0.879	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12082038	3L_12082038_SNP [dm3] 3L_12088938_SNP [dm6]	C	T	8.599e^-5	0.879	SYNONYMOUS_CODING CG17154	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14498018	3L_14498018_SNP [dm3] 3L_14504918_SNP [dm6]	T	C	8.613e^-5	0.879	INTRON bbg
3L	12561408	3L_12561408_SNP [dm3] 3L_12568308_SNP [dm6]	A	G	8.618e^-5	0.879	INTRON sowah
X	5889283	X_5889283_SNP [dm3] X_5995250_SNP [dm6]	T	A	8.723e^-5	0.879	INTERGENIC
X	4007372	X_4007372_SNP [dm3] X_4113339_SNP [dm6]	A	C	8.796e^-5	0.879	SYNONYMOUS_CODING Nsun2 UPSTREAM dgt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15032271	3R_15032271_DEL [dm3] 3R_19206549_DEL [dm6]	TCC	T	8.828e^-5	0.879	INTERGENIC
2R	3532772	2R_3532772_SNP [dm3] 2R_7645267_SNP [dm6]	T	A	8.931e^-5	0.879	SYNONYMOUS_CODING CG43340 INTRON CG43340
2L	9348590	2L_9348590_SNP [dm3] 2L_9348590_SNP [dm6]	C	G	8.935e^-5	0.879	UPSTREAM CG43350 DOWNSTREAM CR44802 INTERGENIC
2L	12395190	2L_12395190_SNP [dm3] 2L_12395190_SNP [dm6]	T	G	8.971e^-5	0.879	INTRON bru-2
X	15643523	X_15643523_SNP [dm3] X_15749490_SNP [dm6]	A	G	8.986e^-5	0.879	DOWNSTREAM Tcp-1zeta INTRON CG8239	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10813616	2R_10813616_SNP [dm3] 2R_14926111_SNP [dm6]	T	C	9.091e^-5	0.879	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13117116	3R_13117116_SNP [dm3] 3R_17291394_SNP [dm6]	T	A	9.207e^-5	0.879	INTERGENIC
2R	12221840	2R_12221840_SNP [dm3] 2R_16334335_SNP [dm6]	C	G	9.281e^-5	0.879	UPSTREAM Vha44 INTRON Vha44
2L	13920161	2L_13920161_SNP [dm3] 2L_13920161_SNP [dm6]	A	T	9.322e^-5	0.879	DOWNSTREAM CG16886 INTRON Ance-3
3L	7568581	3L_7568581_SNP [dm3] 3L_7575481_SNP [dm6]	G	T	9.362e^-5	0.879	INTERGENIC
3L	7635039	3L_7635039_SNP [dm3] 3L_7641939_SNP [dm6]	A	G	9.430e^-5	0.879	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2R	12825549	2R_12825549_SNP [dm3] 2R_16938044_SNP [dm6]	A	C	9.458e^-5	0.879	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3L	8021509	3L_8021509_SNP [dm3] 3L_8028409_SNP [dm6]	A	G	9.483e^-5	0.879	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad
2R	5315932	2R_5315932_SNP [dm3] 2R_9428427_SNP [dm6]	A	C	9.506e^-5	0.879	INTRON Pdk
3L	7603947	3L_7603947_SNP [dm3] 3L_7610847_SNP [dm6]	A	G	9.542e^-5	0.879	INTRON CG33275	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19472748	X_19472748_SNP [dm3] X_19578715_SNP [dm6]	C	T	9.732e^-5	0.879	UPSTREAM Tao INTRON Tao	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	18819473	2L_18819473_SNP [dm3] 2L_18819473_SNP [dm6]	A	G	9.751e^-5	0.879	INTRON CG17324
2R	7407755	2R_7407755_SNP [dm3] 2R_11520250_SNP [dm6]	C	T	9.763e^-5	0.879	INTERGENIC	TF binding site mE1_TFBS_cad
X	17668114	X_17668114_DEL [dm3] X_17774081_DEL [dm6]	CAC	C	9.831e^-5	0.879	INTRON unc-4	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15007726	3R_15007726_SNP [dm3] 3R_19182004_SNP [dm6]	C	A	9.837e^-5	0.879	INTRON CG31475
2L	14387352	2L_14387352_SNP [dm3] 2L_14387352_SNP [dm6]	T	C	9.868e^-5	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14854138	2L_14854138_SNP [dm3] 2L_14854138_SNP [dm6]	G	A	9.912e^-5	0.879	INTERGENIC
2L	19756818	2L_19756818_SNP [dm3] 2L_19756818_SNP [dm6]	A	T	9.933e^-5	0.879	UTR_5_PRIME CG10631 DOWNSTREAM CG10628
2R	8691988	2R_8691988_SNP [dm3] 2R_12804483_SNP [dm6]	G	A	9.954e^-5	0.879	INTERGENIC
3L	17710615	3L_17710615_SNP [dm3] 3L_17717515_SNP [dm6]	T	C	1.000e^-4	0.879	INTRON Ccn
2L	10340505	2L_10340505_SNP [dm3] 2L_10340505_SNP [dm6]	C	T	1.012e^-4	0.879	INTRON SamDC	TF binding site BDTNP1_TFBS_dl
3L	16216478	3L_16216478_SNP [dm3] 3L_16223378_SNP [dm6]	C	T	1.013e^-4	0.879	INTERGENIC
2L	6481840	2L_6481840_SNP [dm3] 2L_6481840_SNP [dm6]	A	G	1.014e^-4	0.879	UPSTREAM CR45463 INTRON DLP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_Trl mE1_TFBS_Ubx
3R	8115290	3R_8115290_INS [dm3] 3R_12289568_INS [dm6]	C	CA	1.017e^-4	0.879	INTRON svp	TF binding site mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
3R	8566493	3R_8566493_SNP [dm3] 3R_12740771_SNP [dm6]	G	C	1.021e^-4	0.879	NON_SYNONYMOUS_CODING CG5724	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10499143	2L_10499143_SNP [dm3] 2L_10499143_SNP [dm6]	A	G	1.034e^-4	0.879	INTRON Myo31DF
3L	7544296	3L_7544296_SNP [dm3] 3L_7551196_SNP [dm6]	T	A	1.034e^-4	0.879	INTERGENIC
2R	11688221	2R_11688221_SNP [dm3] 2R_15800716_SNP [dm6]	C	T	1.036e^-4	0.879	INTRON Zasp52 & 1 other
3L	1376263	3L_1376263_SNP [dm3] 3L_1376263_SNP [dm6]	G	C	1.051e^-4	0.879	INTRON Ptp61F & 1 other
X	19471650	X_19471650_SNP [dm3] X_19577617_SNP [dm6]	A	G	1.054e^-4	0.879	INTRON Tao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	2593381	3L_2593381_SNP [dm3] 3L_2593381_SNP [dm6]	C	T	1.055e^-4	0.879	SPLICE_SITE_REGION dos INTRON dos	TF binding site mE1_TFBS_cad
2R	19573545	2R_19573545_SNP [dm3] 2R_23686022_SNP [dm6]	G	T	1.058e^-4	0.879	UPSTREAM l_2_efl INTRON St3
3R	1834471	3R_1834471_SNP [dm3] 3R_6008749_SNP [dm6]	A	G	1.064e^-4	0.879	UPSTREAM Rm62 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	25441261	3R_25441261_SNP [dm3] 3R_29615539_SNP [dm6]	T	C	1.068e^-4	0.879	INTRON alph
3L	6395972	3L_6395972_SNP [dm3] 3L_6402872_SNP [dm6]	A	T	1.080e^-4	0.879	INTRON CG42747
2L	3391232	2L_3391232_SNP [dm3] 2L_3391232_SNP [dm6]	A	G	1.087e^-4	0.879	INTERGENIC
2R	5820066	2R_5820066_SNP [dm3] 2R_9932561_SNP [dm6]	C	G	1.090e^-4	0.879	INTRON Mef2	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19214076	3R_19214076_SNP [dm3] 3R_23388354_SNP [dm6]	C	T	1.092e^-4	0.879	DOWNSTREAM CG31515 INTERGENIC	TF binding site mE1_TFBS_inv
3L	6990161	3L_6990161_SNP [dm3] 3L_6997061_SNP [dm6]	G	C	1.105e^-4	0.879	INTERGENIC
3L	14497936	3L_14497936_SNP [dm3] 3L_14504836_SNP [dm6]	T	A	1.107e^-4	0.879	INTRON bbg
3R	8268696	3R_8268696_SNP [dm3] 3R_12442974_SNP [dm6]	C	A	1.109e^-4	0.879	UPSTREAM Desat1 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22057374	3R_22057374_SNP [dm3] 3R_26231652_SNP [dm6]	T	C	1.112e^-4	0.879	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_chinmo
3R	24474071	3R_24474071_SNP [dm3] 3R_28648349_SNP [dm6]	A	G	1.113e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14662454	2R_14662454_SNP [dm3] 2R_18774949_SNP [dm6]	G	A	1.114e^-4	0.879	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2R	5822433	2R_5822433_SNP [dm3] 2R_9934928_SNP [dm6]	A	T	1.119e^-4	0.879	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13117064	3R_13117064_SNP [dm3] 3R_17291342_SNP [dm6]	A	G	1.121e^-4	0.879	INTERGENIC
2L	5773867	2L_5773867_SNP [dm3] 2L_5773867_SNP [dm6]	C	A	1.123e^-4	0.879	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11789572	2R_11789572_SNP [dm3] 2R_15902067_SNP [dm6]	T	C	1.126e^-4	0.879	INTRON sli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6433847	3L_6433847_SNP [dm3] 3L_6440747_SNP [dm6]	A	C	1.134e^-4	0.879	INTRON CG42747
2L	19790581	2L_19790581_SNP [dm3] 2L_19790581_SNP [dm6]	T	A	1.140e^-4	0.879	INTRON CdGAPr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	5560194	3R_5560194_SNP [dm3] 3R_9734472_SNP [dm6]	A	T	1.147e^-4	0.879	UTR_3_PRIME CG12950 DOWNSTREAM CG12950
2L	13176976	2L_13176976_SNP [dm3] 2L_13176976_SNP [dm6]	T	G	1.155e^-4	0.879	UPSTREAM CG5439 & 1 other DOWNSTREAM CG43925 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
2L	10505125	2L_10505125_SNP [dm3] 2L_10505125_SNP [dm6]	C	T	1.163e^-4	0.879	INTRON Myo31DF
3R	8562412	3R_8562412_SNP [dm3] 3R_12736690_SNP [dm6]	A	C	1.171e^-4	0.879	INTERGENIC
3L	2170724	3L_2170724_SNP [dm3] 3L_2170724_SNP [dm6]	T	G	1.176e^-4	0.879	DOWNSTREAM CR15821 INTRON CG5704
2L	899450	2L_899450_SNP [dm3] 2L_899450_SNP [dm6]	C	T	1.177e^-4	0.879	SYNONYMOUS_CODING Lsp1beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10176894	2R_10176894_SNP [dm3] 2R_14289389_SNP [dm6]	T	C	1.177e^-4	0.879	UPSTREAM Ih INTRON Ih	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	4802259	3L_4802259_SNP [dm3] 3L_4802259_SNP [dm6]	G	C	1.189e^-4	0.879	DOWNSTREAM CG7509 EXON CR44528
2L	5773708	2L_5773708_SNP [dm3] 2L_5773708_SNP [dm6]	G	T	1.192e^-4	0.879	UPSTREAM CG9171 INTRON CG9171
2R	11689729	2R_11689729_SNP [dm3] 2R_15802224_SNP [dm6]	T	C	1.197e^-4	0.879	INTRON Zasp52 & 1 other
2R	9495155	2R_9495155_SNP [dm3] 2R_13607650_SNP [dm6]	T	G	1.200e^-4	0.879	INTERGENIC
3R	20554790	3R_20554790_SNP [dm3] 3R_24729068_SNP [dm6]	C	A	1.203e^-4	0.879	INTRON tok
X	5249634	X_5249634_SNP [dm3] X_5355601_SNP [dm6]	C	T	1.204e^-4	0.879	INTRON SK
X	19470503	X_19470503_SNP [dm3] X_19576470_SNP [dm6]	A	G	1.216e^-4	0.879	INTRON Tao
3L	2170754	3L_2170754_SNP [dm3] 3L_2170754_SNP [dm6]	C	A	1.218e^-4	0.879	DOWNSTREAM CR15821 INTRON CG5704
3R	9076308	3R_9076308_SNP [dm3] 3R_13250586_SNP [dm6]	T	C	1.225e^-4	0.879	INTRON Ace
2R	11331556	2R_11331556_SNP [dm3] 2R_15444051_SNP [dm6]	G	A	1.238e^-4	0.879	INTRON CG43729
3L	16197693	3L_16197693_SNP [dm3] 3L_16204593_SNP [dm6]	C	T	1.256e^-4	0.879	INTERGENIC
X	14240094	X_14240094_SNP [dm3] X_14346061_SNP [dm6]	G	A	1.261e^-4	0.879	INTRON dpr8
2L	19757254	2L_19757254_SNP [dm3] 2L_19757254_SNP [dm6]	C	T	1.277e^-4	0.879	UTR_3_PRIME CG10628 UPSTREAM CG10631
3L	15777520	3L_15777520_SNP [dm3] 3L_15784420_SNP [dm6]	A	G	1.279e^-4	0.879	INTERGENIC
3R	9494757	3R_9494757_SNP [dm3] 3R_13669035_SNP [dm6]	T	C	1.279e^-4	0.879	NON_SYNONYMOUS_CODING Task6 INTRON Task6
3L	18669460	3L_18669460_SNP [dm3] 3L_18676360_SNP [dm6]	A	C	1.288e^-4	0.879	SYNONYMOUS_CODING GNBP1 UPSTREAM GNBP2
2R	9102973	2R_9102973_SNP [dm3] 2R_13215468_SNP [dm6]	C	G	1.302e^-4	0.879	SYNONYMOUS_CODING CG4627 UPSTREAM AQP DOWNSTREAM CG4630
2R	19124000	2R_19124000_SNP [dm3] 2R_23236477_SNP [dm6]	G	A	1.307e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13646116	2R_13646116_SNP [dm3] 2R_17758611_SNP [dm6]	C	T	1.311e^-4	0.879	INTRON HLH54F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	4402096	2R_4402096_SNP [dm3] 2R_8514591_SNP [dm6]	C	T	1.312e^-4	0.879	INTRON mtt
3L	6426980	3L_6426980_DEL [dm3] 3L_6433880_DEL [dm6]	TT	T	1.315e^-4	0.879	INTRON CG42747
3R	13117063	3R_13117063_SNP [dm3] 3R_17291341_SNP [dm6]	G	C	1.323e^-4	0.879	INTERGENIC
3L	3797698	3L_3797698_SNP [dm3] 3L_3797698_SNP [dm6]	A	G	1.331e^-4	0.879	INTRON CG32264
X	10088666	X_10088666_SNP [dm3] X_10194633_SNP [dm6]	T	G	1.333e^-4	0.879	UTR_3_PRIME CG43902 INTRON CR44894
2R	7403345	2R_7403345_SNP [dm3] 2R_11515840_SNP [dm6]	A	C	1.344e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	14797183	2R_14797183_SNP [dm3] 2R_18909678_SNP [dm6]	A	G	1.347e^-4	0.879	SYNONYMOUS_CODING Vha100-3 INTRON sano	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19484430	3L_19484430_SNP [dm3] 3L_19491330_SNP [dm6]	A	G	1.347e^-4	0.879	DOWNSTREAM CG9449 INTERGENIC	TF binding site mE1_TFBS_cad
3L	19484434	3L_19484434_SNP [dm3] 3L_19491334_SNP [dm6]	T	C	1.347e^-4	0.879	DOWNSTREAM CG9449 INTERGENIC	TF binding site mE1_TFBS_cad
2L	19804938	2L_19804938_SNP [dm3] 2L_19804938_SNP [dm6]	G	A	1.356e^-4	0.879	INTRON sick	TF binding site mE1_TFBS_cad
3R	25420514	3R_25420514_SNP [dm3] 3R_29594792_SNP [dm6]	G	C	1.364e^-4	0.879	INTRON alph
3R	9076310	3R_9076310_SNP [dm3] 3R_13250588_SNP [dm6]	C	A	1.368e^-4	0.879	INTRON Ace
3L	7197599	3L_7197599_SNP [dm3] 3L_7204499_SNP [dm6]	T	C	1.378e^-4	0.879	INTERGENIC
2L	6482025	2L_6482025_SNP [dm3] 2L_6482025_SNP [dm6]	C	T	1.381e^-4	0.879	SYNONYMOUS_CODING DLP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19762084	2L_19762084_SNP [dm3] 2L_19762084_SNP [dm6]	G	A	1.386e^-4	0.879	SYNONYMOUS_CODING fbp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9284317	3R_9284317_SNP [dm3] 3R_13458595_SNP [dm6]	T	A	1.392e^-4	0.879	INTRON CG14372 & 1 other
3R	8560928	3R_8560928_SNP [dm3] 3R_12735206_SNP [dm6]	A	C	1.401e^-4	0.879	INTERGENIC
X	9497052	X_9497052_SNP [dm3] X_9603019_SNP [dm6]	T	G	1.403e^-4	0.879	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25452556	3R_25452556_SNP [dm3] 3R_29626834_SNP [dm6]	C	T	1.406e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13629086	X_13629086_SNP [dm3] X_13735053_SNP [dm6]	C	T	1.407e^-4	0.879	INTRON g
3L	716379	3L_716379_SNP [dm3] 3L_716379_SNP [dm6]	C	T	1.412e^-4	0.879	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	10813598	2R_10813598_SNP [dm3] 2R_14926093_SNP [dm6]	C	T	1.416e^-4	0.879	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9007278	2R_9007278_SNP [dm3] 2R_13119773_SNP [dm6]	A	G	1.421e^-4	0.879	INTRON CG13325
3L	739619	3L_739619_SNP [dm3] 3L_739619_SNP [dm6]	G	A	1.421e^-4	0.879	UPSTREAM hng3 INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9978778	2R_9978778_SNP [dm3] 2R_14091273_SNP [dm6]	T	C	1.422e^-4	0.879	SYNONYMOUS_CODING CG42288 DOWNSTREAM CG42287 INTRON Prosap
2L	10505012	2L_10505012_SNP [dm3] 2L_10505012_SNP [dm6]	T	G	1.432e^-4	0.879	INTRON Myo31DF
3R	10047686	3R_10047686_SNP [dm3] 3R_14221964_SNP [dm6]	C	G	1.437e^-4	0.879	UPSTREAM CG33109 DOWNSTREAM Sp212 INTERGENIC
2R	7423392	2R_7423392_DEL [dm3] 2R_11535887_DEL [dm6]	TTC	GA	1.439e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8939435	3R_8939435_INS [dm3] 3R_13113713_INS [dm6]	T	TAAGCTGGTA	1.446e^-4	0.879	INTRON timeout
2R	19476075	2R_19476075_SNP [dm3] 2R_23588552_SNP [dm6]	C	A	1.451e^-4	0.879	INTRON apt
3R	9055231	3R_9055231_SNP [dm3] 3R_13229509_SNP [dm6]	C	A	1.458e^-4	0.879	UTR_3_PRIME Ace INTRON Ace
2L	13528089	2L_13528089_SNP [dm3] 2L_13528089_SNP [dm6]	A	G	1.462e^-4	0.879	SYNONYMOUS_CODING CG33640 UPSTREAM CG33641 INTRON B4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7423368	2R_7423368_SNP [dm3] 2R_11535863_SNP [dm6]	T	A	1.462e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	27094600	3R_27094600_DEL [dm3] 3R_31268878_DEL [dm6]	CTCT	AG	1.464e^-4	0.879	DOWNSTREAM ppk24 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	727396	3L_727396_SNP [dm3] 3L_727396_SNP [dm6]	C	T	1.466e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_sens
2R	15876610	2R_15876610_SNP [dm3] 2R_19989105_SNP [dm6]	G	T	1.472e^-4	0.879	INTERGENIC
3L	9045558	3L_9045558_SNP [dm3] 3L_9052458_SNP [dm6]	A	T	1.476e^-4	0.879	UPSTREAM Argk INTRON Argk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22198495	3R_22198495_SNP [dm3] 3R_26372773_SNP [dm6]	T	A	1.476e^-4	0.879	INTERGENIC
3L	6990191	3L_6990191_SNP [dm3] 3L_6997091_SNP [dm6]	C	G	1.479e^-4	0.879	INTERGENIC
3L	16689633	3L_16689633_INS [dm3] 3L_16696533_INS [dm6]	T	TT	1.487e^-4	0.879	INTRON CR45179 & 2 others
2L	11934167	2L_11934167_SNP [dm3] 2L_11934167_SNP [dm6]	A	G	1.495e^-4	0.879	UPSTREAM Or33a INTERGENIC
3R	17959300	3R_17959300_DEL [dm3] 3R_22133578_DEL [dm6]	TG	A	1.495e^-4	0.879	UPSTREAM SKIP DOWNSTREAM CG42390 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25473616	3R_25473616_SNP [dm3] 3R_29647894_SNP [dm6]	G	T	1.497e^-4	0.879	INTRON Dop1R2
2L	10522627	2L_10522627_SNP [dm3] 2L_10522627_SNP [dm6]	T	A	1.502e^-4	0.879	INTERGENIC
2L	9903070	2L_9903070_SNP [dm3] 2L_9903070_SNP [dm6]	G	A	1.514e^-4	0.879	DOWNSTREAM CG13124 INTRON Muc30E
2R	7423363	2R_7423363_SNP [dm3] 2R_11535858_SNP [dm6]	C	T	1.516e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6965711	3L_6965711_SNP [dm3] 3L_6972611_SNP [dm6]	A	G	1.518e^-4	0.879	UPSTREAM CG10063 DOWNSTREAM CG9953 & 1 other INTERGENIC
3R	8460552	3R_8460552_SNP [dm3] 3R_12634830_SNP [dm6]	T	G	1.520e^-4	0.879	UPSTREAM CG11598 DOWNSTREAM CG18530 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9417177	2R_9417177_SNP [dm3] 2R_13529672_SNP [dm6]	G	T	1.531e^-4	0.879	UTR_5_PRIME Vmat INTRON Vmat
X	19470506	X_19470506_SNP [dm3] X_19576473_SNP [dm6]	G	T	1.533e^-4	0.879	INTRON Tao
2L	1712589	2L_1712589_SNP [dm3] 2L_1712589_SNP [dm6]	A	T	1.534e^-4	0.879	SPLICE_SITE_REGION frtz INTRON frtz	TF binding site mE1_TFBS_chinmo
2L	19754029	2L_19754029_SNP [dm3] 2L_19754029_SNP [dm6]	A	G	1.541e^-4	0.879	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad
3R	22940710	3R_22940710_SNP [dm3] 3R_27114988_SNP [dm6]	G	A	1.551e^-4	0.879	UTR_3_PRIME CG5815 DOWNSTREAM CG6066
3R	8830550	3R_8830550_SNP [dm3] 3R_13004828_SNP [dm6]	A	G	1.554e^-4	0.879	SYNONYMOUS_CODING CG7518	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8288562	3R_8288562_SNP [dm3] 3R_12462840_SNP [dm6]	C	T	1.555e^-4	0.879	DOWNSTREAM CG12267 INTRON CG5608	TF binding site mE1_TFBS_inv
2L	19759166	2L_19759166_SNP [dm3] 2L_19759166_SNP [dm6]	A	T	1.557e^-4	0.879	UPSTREAM CG10628 INTRON CG10463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14004966	3L_14004966_SNP [dm3] 3L_14011866_SNP [dm6]	A	C	1.563e^-4	0.879	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	9346428	2L_9346428_SNP [dm3] 2L_9346428_SNP [dm6]	T	G	1.571e^-4	0.879	INTERGENIC
3L	11030706	3L_11030706_SNP [dm3] 3L_11037606_SNP [dm6]	A	G	1.574e^-4	0.879	INTRON CG43693	TF binding site mE1_TFBS_sens
X	19606638	X_19606638_SNP [dm3] X_19712605_SNP [dm6]	C	A	1.579e^-4	0.879	UTR_5_PRIME meso18E UPSTREAM CR44889 INTRON meso18E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6835104	3L_6835104_SNP [dm3] 3L_6842004_SNP [dm6]	T	A	1.584e^-4	0.879	INTERGENIC
X	4358333	X_4358333_SNP [dm3] X_4464300_SNP [dm6]	T	C	1.586e^-4	0.879	INTRON bi & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	20365538	2R_20365538_SNP [dm3] 2R_24478015_SNP [dm6]	C	T	1.590e^-4	0.879	INTRON CG13579	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19757258	2L_19757258_SNP [dm3] 2L_19757258_SNP [dm6]	T	C	1.592e^-4	0.879	UTR_3_PRIME CG10628 UPSTREAM CG10631
2L	4470483	2L_4470483_SNP [dm3] 2L_4470483_SNP [dm6]	A	T	1.598e^-4	0.879	INTRON ine	TF binding site mE1_TFBS_cad
2L	14844395	2L_14844395_SNP [dm3] 2L_14844395_SNP [dm6]	G	A	1.609e^-4	0.879	DOWNSTREAM CG15279 INTERGENIC
2R	18926157	2R_18926157_SNP [dm3] 2R_23038634_SNP [dm6]	T	G	1.620e^-4	0.879	INTRON twi & 1 other
3R	13117005	3R_13117005_SNP [dm3] 3R_17291283_SNP [dm6]	A	G	1.627e^-4	0.879	INTERGENIC
2R	8691965	2R_8691965_SNP [dm3] 2R_12804460_SNP [dm6]	C	T	1.635e^-4	0.879	INTERGENIC
X	11656507	X_11656507_INS [dm3] X_11762474_INS [dm6]	C	CTTGT	1.635e^-4	0.879	DOWNSTREAM CG9360 INTRON m
2L	13179871	2L_13179871_SNP [dm3] 2L_13179871_SNP [dm6]	G	T	1.641e^-4	0.879	DOWNSTREAM CG5439 & 1 other INTRON CG5287	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	14004774	3L_14004774_SNP [dm3] 3L_14011674_SNP [dm6]	T	C	1.645e^-4	0.879	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16216452	3L_16216452_SNP [dm3] 3L_16223352_SNP [dm6]	A	T	1.652e^-4	0.879	INTERGENIC
2L	13715185	2L_13715185_SNP [dm3] 2L_13715185_SNP [dm6]	G	A	1.659e^-4	0.879	INTRON CG31814
3R	8797111	3R_8797111_SNP [dm3] 3R_12971389_SNP [dm6]	T	G	1.661e^-4	0.879	INTRON CG7381
3R	8242525	3R_8242525_SNP [dm3] 3R_12416803_SNP [dm6]	C	T	1.671e^-4	0.879	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8639294	X_8639294_INS [dm3] X_8745261_INS [dm6]	A	AA	1.683e^-4	0.879	INTERGENIC
X	19470519	X_19470519_SNP [dm3] X_19576486_SNP [dm6]	C	G	1.684e^-4	0.879	INTRON Tao
2L	3193182	2L_3193182_INS [dm3] 2L_3193182_INS [dm6]	C	CC	1.687e^-4	0.879	INTRON CG34393
3L	20515253	3L_20515253_INS [dm3] 3L_20522153_INS [dm6]	A	ATGTGTTTGATTTTA...	1.691e^-4	0.879	SPLICE_SITE_ACCEPTOR CG5104 DOWNSTREAM CG4825 INTRON CG5104	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8609029	3R_8609029_SNP [dm3] 3R_12783307_SNP [dm6]	A	C	1.692e^-4	0.879	UPSTREAM beat-Vc INTERGENIC
2L	19759083	2L_19759083_SNP [dm3] 2L_19759083_SNP [dm6]	C	A	1.696e^-4	0.879	NON_SYNONYMOUS_CODING CG10463 UPSTREAM CG10628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	19757239	2L_19757239_SNP [dm3] 2L_19757239_SNP [dm6]	A	G	1.702e^-4	0.879	UPSTREAM CG10631 DOWNSTREAM CG10628 INTERGENIC
2L	11859865	2L_11859865_SNP [dm3] 2L_11859865_SNP [dm6]	T	A	1.704e^-4	0.879	INTRON Pde1c
3L	12542839	3L_12542839_SNP [dm3] 3L_12549739_SNP [dm6]	T	A	1.711e^-4	0.879	INTRON sowah
3R	10843205	3R_10843205_DEL [dm3] 3R_15017483_DEL [dm6]	AATA	A	1.721e^-4	0.879	INTERGENIC
2R	5312532	2R_5312532_SNP [dm3] 2R_9425027_SNP [dm6]	T	C	1.726e^-4	0.879	INTRON prel
3L	16216555	3L_16216555_SNP [dm3] 3L_16223455_SNP [dm6]	G	C	1.726e^-4	0.879	INTERGENIC
3L	16216470	3L_16216470_DEL [dm3] 3L_16223370_DEL [dm6]	TT	T	1.727e^-4	0.879	INTERGENIC
2L	21214788	2L_21214788_INS [dm3] 2L_21214788_INS [dm6]	T	TT	1.733e^-4	0.879	DOWNSTREAM snRNA:U4:39B INTRON Atg18b	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	20786656	3L_20786656_SNP [dm3] 3L_20793556_SNP [dm6]	C	T	1.746e^-4	0.879	UPSTREAM Six4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10913869	3L_10913869_SNP [dm3] 3L_10920769_SNP [dm6]	T	A	1.747e^-4	0.879	INTERGENIC
2L	19756819	2L_19756819_SNP [dm3] 2L_19756819_SNP [dm6]	A	T	1.747e^-4	0.879	UTR_5_PRIME CG10631 DOWNSTREAM CG10628
3R	24474097	3R_24474097_DEL [dm3] 3R_28648375_DEL [dm6]	TGGCT	T	1.755e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9011466	3L_9011466_SNP [dm3] 3L_9018366_SNP [dm6]	G	A	1.755e^-4	0.879	INTRON Doc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18615283	2R_18615283_SNP [dm3] 2R_22727778_SNP [dm6]	G	T	1.769e^-4	0.879	UTR_5_PRIME jbug INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2L	8744349	2L_8744349_SNP [dm3] 2L_8744349_SNP [dm6]	G	A	1.780e^-4	0.879	INTERGENIC
3R	8344006	3R_8344006_SNP [dm3] 3R_12518284_SNP [dm6]	A	G	1.781e^-4	0.879	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	7423343	2R_7423343_SNP [dm3] 2R_11535838_SNP [dm6]	T	A	1.783e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA
X	19475510	X_19475510_SNP [dm3] X_19581477_SNP [dm6]	A	G	1.787e^-4	0.879	SYNONYMOUS_CODING CG14218	TF binding site mE1_TFBS_chinmo
2R	14854101	2R_14854101_SNP [dm3] 2R_18966596_SNP [dm6]	T	G	1.792e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20900659	X_20900659_SNP [dm3] X_21029632_SNP [dm6]	T	A	1.794e^-4	0.879	UTR_3_PRIME CG1529 DOWNSTREAM CG1529
2R	4315698	2R_4315698_SNP [dm3] 2R_8428193_SNP [dm6]	T	C	1.794e^-4	0.879	INTRON CSN7
2R	3689094	2R_3689094_SNP [dm3] 2R_7801589_SNP [dm6]	T	A	1.799e^-4	0.879	DOWNSTREAM mus205 INTRON Nop17l
2L	19874712	2L_19874712_SNP [dm3] 2L_19874712_SNP [dm6]	T	C	1.799e^-4	0.879	INTRON sick	TF binding site mE1_TFBS_cad
2R	8496792	2R_8496792_SNP [dm3] 2R_12609287_SNP [dm6]	C	G	1.802e^-4	0.879	SYNONYMOUS_CODING Amph INTRON Amph
3R	9963359	3R_9963359_SNP [dm3] 3R_14137637_SNP [dm6]	T	A	1.804e^-4	0.879	INTERGENIC
2L	9015603	2L_9015603_SNP [dm3] 2L_9015603_SNP [dm6]	T	A	1.807e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	21199281	2L_21199281_DEL [dm3] 2L_21199281_DEL [dm6]	AAATGTGTGGGTCTGATTTC...	A	1.808e^-4	0.879	UTR_3_PRIME CG31624 UPSTREAM Ret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	19469796	X_19469796_SNP [dm3] X_19575763_SNP [dm6]	A	G	1.816e^-4	0.879	SYNONYMOUS_CODING Tao	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19207288	3R_19207288_SNP [dm3] 3R_23381566_SNP [dm6]	C	T	1.818e^-4	0.879	INTRON CG4393	TF binding site mE1_TFBS_cad
2L	10522660	2L_10522660_SNP [dm3] 2L_10522660_SNP [dm6]	T	C	1.819e^-4	0.879	INTERGENIC
2R	16284965	2R_16284965_SNP [dm3] 2R_20397460_SNP [dm6]	A	G	1.820e^-4	0.879	INTERGENIC
2R	19991368	2R_19991368_SNP [dm3] 2R_24103845_SNP [dm6]	T	G	1.828e^-4	0.879	SYNONYMOUS_CODING enok
2L	16572243	2L_16572243_SNP [dm3] 2L_16572243_SNP [dm6]	C	A	1.832e^-4	0.879	INTRON CG42389
2L	9785551	2L_9785551_SNP [dm3] 2L_9785551_SNP [dm6]	A	G	1.835e^-4	0.879	UPSTREAM IP3K1 INTRON IP3K1
3R	19534544	3R_19534544_SNP [dm3] 3R_23708822_SNP [dm6]	A	G	1.843e^-4	0.879	DOWNSTREAM CG31414 INTERGENIC
2R	20130681	2R_20130681_SNP [dm3] 2R_24243158_SNP [dm6]	C	T	1.848e^-4	0.879	UPSTREAM nord INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	18819663	2L_18819663_SNP [dm3] 2L_18819663_SNP [dm6]	A	G	1.851e^-4	0.879	INTRON CG17324
3L	7635018	3L_7635018_SNP [dm3] 3L_7641918_SNP [dm6]	A	C	1.858e^-4	0.879	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3L	18536509	3L_18536509_INS [dm3] 3L_18543409_INS [dm6]	A	AATATATG	1.858e^-4	0.879	INTERGENIC
2R	5797993	2R_5797993_SNP [dm3] 2R_9910488_SNP [dm6]	G	T	1.860e^-4	0.879	UPSTREAM Etf-QO DOWNSTREAM FMRFa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4466327	2L_4466327_SNP [dm3] 2L_4466327_SNP [dm6]	T	C	1.863e^-4	0.879	SYNONYMOUS_CODING CG17840	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6124948	2L_6124948_SNP [dm3] 2L_6124948_SNP [dm6]	T	A	1.868e^-4	0.879	UPSTREAM Arpc4 DOWNSTREAM stai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	19832875	2R_19832875_SNP [dm3] 2R_23945352_SNP [dm6]	A	G	1.870e^-4	0.879	INTRON Galphas	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6110473	2L_6110473_SNP [dm3] 2L_6110473_SNP [dm6]	A	G	1.886e^-4	0.879	INTRON stai
3L	6428714	3L_6428714_SNP [dm3] 3L_6435614_SNP [dm6]	C	T	1.888e^-4	0.879	INTRON CG42747	TF binding site mE1_TFBS_cad
3R	25445029	3R_25445029_SNP [dm3] 3R_29619307_SNP [dm6]	A	G	1.889e^-4	0.879	UTR_5_PRIME CG1907	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10718602	2R_10718602_SNP [dm3] 2R_14831097_SNP [dm6]	C	T	1.894e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5243225	2L_5243225_SNP [dm3] 2L_5243225_SNP [dm6]	A	C	1.897e^-4	0.879	UPSTREAM tkv INTRON tkv EXON CR14033	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16216498	3L_16216498_SNP [dm3] 3L_16223398_SNP [dm6]	A	T	1.900e^-4	0.879	INTERGENIC
2L	9511017	2L_9511017_SNP [dm3] 2L_9511017_SNP [dm6]	G	A	1.902e^-4	0.879	INTRON CG33298
2L	4466654	2L_4466654_SNP [dm3] 2L_4466654_SNP [dm6]	C	T	1.906e^-4	0.879	SYNONYMOUS_CODING CG17840	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9839958	3R_9839958_SNP [dm3] 3R_14014236_SNP [dm6]	A	T	1.908e^-4	0.879	INTRON rdx	TF binding site BDTNP1_TFBS_dl
3R	14120386	3R_14120386_SNP [dm3] 3R_18294664_SNP [dm6]	T	C	1.921e^-4	0.879	INTRON l_3_05822
2L	8115617	2L_8115617_SNP [dm3] 2L_8115617_SNP [dm6]	G	A	1.944e^-4	0.879	UTR_3_PRIME Bsg
2L	19804284	2L_19804284_SNP [dm3] 2L_19804284_SNP [dm6]	T	C	1.944e^-4	0.879	INTRON sick
2L	7661887	2L_7661887_SNP [dm3] 2L_7661887_SNP [dm6]	C	A	1.946e^-4	0.879	INTRON Slob
3R	22198507	3R_22198507_SNP [dm3] 3R_26372785_SNP [dm6]	G	A	1.956e^-4	0.879	INTERGENIC
2L	16622940	2L_16622940_SNP [dm3] 2L_16622940_SNP [dm6]	C	A	1.959e^-4	0.879	INTRON CG42389
2R	15144980	2R_15144980_SNP [dm3] 2R_19257475_SNP [dm6]	C	T	1.973e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	19185488	2R_19185488_SNP [dm3] 2R_23297965_SNP [dm6]	T	C	1.975e^-4	0.879	INTERGENIC
3R	14309927	3R_14309927_SNP [dm3] 3R_18484205_SNP [dm6]	T	C	1.975e^-4	0.879	INTRON fru
3R	12112370	3R_12112370_SNP [dm3] 3R_16286648_SNP [dm6]	G	A	1.980e^-4	0.879	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	13552055	2R_13552055_SNP [dm3] 2R_17664550_SNP [dm6]	C	T	1.981e^-4	0.879	INTRON CCHa1-R
2R	16289285	2R_16289285_SNP [dm3] 2R_20401780_SNP [dm6]	G	C	1.982e^-4	0.879	INTERGENIC
3L	4810297	3L_4810297_SNP [dm3] 3L_4810297_SNP [dm6]	G	C	1.984e^-4	0.879	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13533795	2R_13533795_SNP [dm3] 2R_17646290_SNP [dm6]	T	A	1.984e^-4	0.879	DOWNSTREAM CCHa1-R INTERGENIC
3R	23053353	3R_23053353_SNP [dm3] 3R_27227631_SNP [dm6]	G	C	1.986e^-4	0.879	UTR_3_PRIME CG42813	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7403339	2R_7403339_SNP [dm3] 2R_11515834_SNP [dm6]	A	T	1.988e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	19473855	X_19473855_SNP [dm3] X_19579822_SNP [dm6]	G	T	1.988e^-4	0.879	UPSTREAM Tao DOWNSTREAM CG14218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	1167948	3L_1167948_SNP [dm3] 3L_1167948_SNP [dm6]	G	A	1.989e^-4	0.879	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9652017	2R_9652017_SNP [dm3] 2R_13764512_SNP [dm6]	T	A	1.993e^-4	0.879	INTERGENIC
3L	15234898	3L_15234898_SNP [dm3] 3L_15241798_SNP [dm6]	A	T	1.994e^-4	0.879	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13690302	2L_13690302_SNP [dm3] 2L_13690302_SNP [dm6]	A	G	2.000e^-4	0.879	INTRON CG31814
2L	13690306	2L_13690306_SNP [dm3] 2L_13690306_SNP [dm6]	G	C	2.000e^-4	0.879	INTRON CG31814
X	3457095	X_3457095_DEL [dm3] X_3563062_DEL [dm6]	GTATT	G	2.002e^-4	0.879	INTRON CG32791 & 1 other
3R	8346633	3R_8346633_SNP [dm3] 3R_12520911_SNP [dm6]	G	A	2.003e^-4	0.879	INTRON Octbeta3R
2L	15615505	2L_15615505_SNP [dm3] 2L_15615505_SNP [dm6]	A	T	2.007e^-4	0.879	UTR_3_PRIME CG15253 UPSTREAM CG15254
2R	11302130	2R_11302130_SNP [dm3] 2R_15414625_SNP [dm6]	A	T	2.011e^-4	0.879	INTRON CG43729
3R	8499972	3R_8499972_SNP [dm3] 3R_12674250_SNP [dm6]	T	C	2.021e^-4	0.879	UPSTREAM CG6188 DOWNSTREAM CG14395 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4747011	2L_4747011_SNP [dm3] 2L_4747011_SNP [dm6]	T	C	2.022e^-4	0.879	INTRON CG15630
3R	6178927	3R_6178927_SNP [dm3] 3R_10353205_SNP [dm6]	C	T	2.022e^-4	0.879	INTRON jumu	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	27094598	3R_27094598_SNP [dm3] 3R_31268876_SNP [dm6]	C	A	2.025e^-4	0.879	DOWNSTREAM ppk24 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12120570	2R_12120570_SNP [dm3] 2R_16233065_SNP [dm6]	T	A	2.031e^-4	0.879	SYNONYMOUS_CODING CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6166517	2L_6166517_SNP [dm3] 2L_6166517_SNP [dm6]	A	T	2.038e^-4	0.879	INTERGENIC
3R	6548287	3R_6548287_SNP [dm3] 3R_10722565_SNP [dm6]	G	A	2.056e^-4	0.879	INTERGENIC
3R	9963365	3R_9963365_SNP [dm3] 3R_14137643_SNP [dm6]	C	A	2.060e^-4	0.879	INTERGENIC
2L	3493257	2L_3493257_SNP [dm3] 2L_3493257_SNP [dm6]	C	T	2.062e^-4	0.879	DOWNSTREAM tim INTERGENIC
3L	12541707	3L_12541707_SNP [dm3] 3L_12548607_SNP [dm6]	A	T	2.063e^-4	0.879	INTRON sowah
3L	6430158	3L_6430158_SNP [dm3] 3L_6437058_SNP [dm6]	C	A	2.064e^-4	0.879	INTRON CG42747
X	6330198	X_6330198_DEL [dm3] X_6436165_DEL [dm6]	CAC	G	2.070e^-4	0.879	INTRON CG42340	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13426577	2R_13426577_DEL [dm3] 2R_17539072_DEL [dm6]	CCTC	C	2.070e^-4	0.879	UTR_3_PRIME eIF3-S9 UPSTREAM CG43370 DOWNSTREAM eIF3-S9	TF binding site mE1_TFBS_cad
2L	1213501	2L_1213501_SNP [dm3] 2L_1213501_SNP [dm6]	A	G	2.079e^-4	0.879	INTERGENIC
3R	8477681	3R_8477681_SNP [dm3] 3R_12651959_SNP [dm6]	T	A	2.080e^-4	0.879	SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13364932	3L_13364932_SNP [dm3] 3L_13371832_SNP [dm6]	G	T	2.083e^-4	0.879	INTERGENIC
2R	7262554	2R_7262554_SNP [dm3] 2R_11375049_SNP [dm6]	G	C	2.085e^-4	0.879	UPSTREAM CG13203 INTRON CG13203	TF binding site mE1_TFBS_chinmo
2L	9626710	2L_9626710_SNP [dm3] 2L_9626710_SNP [dm6]	C	T	2.088e^-4	0.879	INTERGENIC
2L	9348610	2L_9348610_SNP [dm3] 2L_9348610_SNP [dm6]	G	T	2.090e^-4	0.879	UPSTREAM CG43350 DOWNSTREAM CR44802 INTERGENIC
3R	8265543	3R_8265543_SNP [dm3] 3R_12439821_SNP [dm6]	A	C	2.092e^-4	0.879	UPSTREAM CG17207 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
X	19475616	X_19475616_SNP [dm3] X_19581583_SNP [dm6]	C	A	2.094e^-4	0.879	NON_SYNONYMOUS_CODING CG14218	TF binding site mE1_TFBS_chinmo
2L	8547656	2L_8547656_SNP [dm3] 2L_8547656_SNP [dm6]	A	T	2.095e^-4	0.879	INTRON Sema-1a
X	15643815	X_15643815_SNP [dm3] X_15749782_SNP [dm6]	G	A	2.098e^-4	0.879	DOWNSTREAM Tcp-1zeta INTRON CG8239
3R	24474082	3R_24474082_SNP [dm3] 3R_28648360_SNP [dm6]	C	T	2.105e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19601877	X_19601877_SNP [dm3] X_19707844_SNP [dm6]	A	T	2.107e^-4	0.879	INTRON meso18E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13629080	X_13629080_SNP [dm3] X_13735047_SNP [dm6]	G	A	2.110e^-4	0.879	INTRON g
3R	25426391	3R_25426391_SNP [dm3] 3R_29600669_SNP [dm6]	C	T	2.126e^-4	0.879	INTRON alph & 1 other	TF binding site mE1_TFBS_sens
2L	13528119	2L_13528119_SNP [dm3] 2L_13528119_SNP [dm6]	T	C	2.130e^-4	0.879	SYNONYMOUS_CODING CG33640 UPSTREAM CG33641 INTRON B4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1288372	3L_1288372_SNP [dm3] 3L_1288372_SNP [dm6]	G	C	2.131e^-4	0.879	DOWNSTREAM CG32333 INTRON CG32333
3L	16216528	3L_16216528_SNP [dm3] 3L_16223428_SNP [dm6]	A	G	2.138e^-4	0.879	INTERGENIC
X	4858313	X_4858313_SNP [dm3] X_4964280_SNP [dm6]	T	C	2.139e^-4	0.879	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14853748	2R_14853748_SNP [dm3] 2R_18966243_SNP [dm6]	G	A	2.146e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19509626	2R_19509626_SNP [dm3] 2R_23622103_SNP [dm6]	A	G	2.146e^-4	0.879	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7612769	3L_7612769_SNP [dm3] 3L_7619669_SNP [dm6]	T	A	2.148e^-4	0.879	INTRON CG33275
3L	2823007	3L_2823007_SNP [dm3] 3L_2823007_SNP [dm6]	G	A	2.152e^-4	0.879	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	5210508	2R_5210508_INS [dm3] 2R_9323003_INS [dm6]	T	TGGAT	2.156e^-4	0.879	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19470590	X_19470590_SNP [dm3] X_19576557_SNP [dm6]	C	A	2.161e^-4	0.879	INTRON Tao
3R	14291119	3R_14291119_SNP [dm3] 3R_18465397_SNP [dm6]	C	T	2.169e^-4	0.879	INTRON fru
X	14418888	X_14418888_SNP [dm3] X_14524855_SNP [dm6]	T	G	2.177e^-4	0.879	INTERGENIC
2R	10890318	2R_10890318_SNP [dm3] 2R_15002813_SNP [dm6]	G	C	2.190e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	14239748	X_14239748_SNP [dm3] X_14345715_SNP [dm6]	T	G	2.192e^-4	0.879	INTRON dpr8
3L	716234	3L_716234_SNP [dm3] 3L_716234_SNP [dm6]	G	C	2.196e^-4	0.879	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20653476	2R_20653476_SNP [dm3] 2R_24765953_SNP [dm6]	G	A	2.197e^-4	0.879	SYNONYMOUS_CODING CG3894 DOWNSTREAM GstE12	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11857193	2R_11857193_SNP [dm3] 2R_15969688_SNP [dm6]	T	A	2.199e^-4	0.879	NON_SYNONYMOUS_CODING Strn-Mlck
2L	2485494	2L_2485494_SNP [dm3] 2L_2485494_SNP [dm6]	G	A	2.207e^-4	0.879	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	7076895	2L_7076895_SNP [dm3] 2L_7076895_SNP [dm6]	T	G	2.209e^-4	0.879	INTRON Pvf2
2L	14514329	2L_14514329_INS [dm3] 2L_14514329_INS [dm6]	G	GAGTCTGGCG	2.210e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	15823044	X_15823044_DEL [dm3] X_15929011_DEL [dm6]	AAAAACTGCAGAAAGAAAAC...	A	2.212e^-4	0.879	UTR_3_PRIME Ranbp16 DOWNSTREAM Lcch3 INTRON Ranbp16
3L	6445558	3L_6445558_SNP [dm3] 3L_6452458_SNP [dm6]	A	C	2.214e^-4	0.879	INTRON CG42747
X	19473842	X_19473842_SNP [dm3] X_19579809_SNP [dm6]	A	G	2.215e^-4	0.879	UPSTREAM Tao DOWNSTREAM CG14218 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	23058393	3R_23058393_SNP [dm3] 3R_27232671_SNP [dm6]	T	C	2.221e^-4	0.879	SYNONYMOUS_CODING CG31064	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9030583	2R_9030583_SNP [dm3] 2R_13143078_SNP [dm6]	T	G	2.223e^-4	0.879	UTR_3_PRIME Ack-like DOWNSTREAM Cap-G
2R	16294534	2R_16294534_SNP [dm3] 2R_20407029_SNP [dm6]	A	C	2.243e^-4	0.879	INTERGENIC
2R	19122570	2R_19122570_SNP [dm3] 2R_23235047_SNP [dm6]	T	C	2.247e^-4	0.879	INTERGENIC
X	11657391	X_11657391_SNP [dm3] X_11763358_SNP [dm6]	A	T	2.256e^-4	0.879	DOWNSTREAM CG9360 INTRON m
3L	17181050	3L_17181050_SNP [dm3] 3L_17187950_SNP [dm6]	G	A	2.258e^-4	0.879	INTRON Rbp6
3R	8478919	3R_8478919_SNP [dm3] 3R_12653197_SNP [dm6]	T	C	2.259e^-4	0.879	DOWNSTREAM Dtg INTERGENIC
3R	27094578	3R_27094578_INS [dm3] 3R_31268856_INS [dm6]	G	GTGTT	2.264e^-4	0.879	DOWNSTREAM ppk24 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14886659	X_14886659_SNP [dm3] X_14992626_SNP [dm6]	A	G	2.267e^-4	0.879	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11302533	2R_11302533_SNP [dm3] 2R_15415028_SNP [dm6]	T	C	2.275e^-4	0.879	INTRON CG43729
2R	11889111	2R_11889111_SNP [dm3] 2R_16001606_SNP [dm6]	T	G	2.285e^-4	0.879	UTR_5_PRIME CG8370 UPSTREAM CG8370 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17959380	3R_17959380_SNP [dm3] 3R_22133658_SNP [dm6]	A	C	2.291e^-4	0.879	UPSTREAM SKIP DOWNSTREAM CG42390 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	9699484	3R_9699484_SNP [dm3] 3R_13873762_SNP [dm6]	C	G	2.291e^-4	0.879	NON_SYNONYMOUS_CODING E5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19792115	2L_19792115_SNP [dm3] 2L_19792115_SNP [dm6]	A	G	2.313e^-4	0.879	START_GAINED CG10466 UTR_5_PRIME CG10466 UPSTREAM CG10466 & 1 other DOWNSTREAM fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	10813199	2R_10813199_SNP [dm3] 2R_14925694_SNP [dm6]	C	T	2.313e^-4	0.879	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14285602	X_14285602_SNP [dm3] X_14391569_SNP [dm6]	G	T	2.327e^-4	0.879	INTRON dpr8
2R	19158706	2R_19158706_SNP [dm3] 2R_23271183_SNP [dm6]	C	A	2.336e^-4	0.879	DOWNSTREAM ord & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4358282	X_4358282_SNP [dm3] X_4464249_SNP [dm6]	C	T	2.336e^-4	0.879	INTRON bi & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23130294	3R_23130294_SNP [dm3] 3R_27304572_SNP [dm6]	C	T	2.337e^-4	0.879	INTRON CG3339	TF binding site mE1_TFBS_cad
2R	12765912	2R_12765912_SNP [dm3] 2R_16878407_SNP [dm6]	A	C	2.338e^-4	0.879	INTRON CG8910
3R	13846621	3R_13846621_SNP [dm3] 3R_18020899_SNP [dm6]	T	C	2.339e^-4	0.879	SYNONYMOUS_CODING DNaseII UPSTREAM CG7785	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	6708434	X_6708434_SNP [dm3] X_6814401_SNP [dm6]	G	A	2.341e^-4	0.879	DOWNSTREAM pod1 INTRON iav
X	15643849	X_15643849_SNP [dm3] X_15749816_SNP [dm6]	G	T	2.344e^-4	0.879	DOWNSTREAM Tcp-1zeta INTRON CG8239
3L	2593304	3L_2593304_SNP [dm3] 3L_2593304_SNP [dm6]	A	T	2.345e^-4	0.879	SYNONYMOUS_CODING dos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2593354	3L_2593354_SNP [dm3] 3L_2593354_SNP [dm6]	T	G	2.345e^-4	0.879	INTRON dos	TF binding site mE1_TFBS_cad
2R	5419481	2R_5419481_SNP [dm3] 2R_9531976_SNP [dm6]	T	C	2.348e^-4	0.879	INTRON brp
3R	17959392	3R_17959392_SNP [dm3] 3R_22133670_SNP [dm6]	C	T	2.366e^-4	0.879	UPSTREAM SKIP DOWNSTREAM CG42390 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	8139696	3R_8139696_SNP [dm3] 3R_12313974_SNP [dm6]	G	C	2.370e^-4	0.879	DOWNSTREAM CG4066 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9497046	X_9497046_SNP [dm3] X_9603013_SNP [dm6]	T	A	2.375e^-4	0.879	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5419464	2R_5419464_SNP [dm3] 2R_9531959_SNP [dm6]	C	A	2.389e^-4	0.879	INTRON brp
3L	1440105	3L_1440105_SNP [dm3] 3L_1440105_SNP [dm6]	A	C	2.393e^-4	0.879	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2L	6007283	2L_6007283_SNP [dm3] 2L_6007283_SNP [dm6]	A	G	2.399e^-4	0.879	UPSTREAM Gal DOWNSTREAM CR43866 & 1 other INTERGENIC
3R	19534541	3R_19534541_SNP [dm3] 3R_23708819_SNP [dm6]	G	T	2.399e^-4	0.879	DOWNSTREAM CG31414 INTERGENIC
2L	13570941	2L_13570941_SNP [dm3] 2L_13570941_SNP [dm6]	A	G	2.400e^-4	0.879	INTRON kuz	TF binding site BDTNP1_TFBS_twi
3R	8512048	3R_8512048_SNP [dm3] 3R_12686326_SNP [dm6]	C	T	2.400e^-4	0.879	INTRON kar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6398386	3L_6398386_SNP [dm3] 3L_6405286_SNP [dm6]	G	A	2.401e^-4	0.879	INTRON CG42747
3R	9275657	3R_9275657_SNP [dm3] 3R_13449935_SNP [dm6]	C	A	2.404e^-4	0.879	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16320720	3L_16320720_SNP [dm3] 3L_16327620_SNP [dm6]	C	A	2.407e^-4	0.879	UPSTREAM CG13040 & 1 other INTRON CG13038
2R	14172296	2R_14172296_SNP [dm3] 2R_18284791_SNP [dm6]	G	A	2.416e^-4	0.879	DOWNSTREAM sbb INTRON sbb
2R	9550461	2R_9550461_SNP [dm3] 2R_13662956_SNP [dm6]	A	G	2.417e^-4	0.879	SYNONYMOUS_CODING CG6209 INTRON fas	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	14992708	2L_14992708_SNP [dm3] 2L_14992708_SNP [dm6]	A	G	2.417e^-4	0.879	INTRON mol
2R	11889138	2R_11889138_SNP [dm3] 2R_16001633_SNP [dm6]	A	T	2.421e^-4	0.879	START_GAINED CG8370 UTR_5_PRIME CG8370 UPSTREAM CG8370 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2196718	3L_2196718_SNP [dm3] 3L_2196718_SNP [dm6]	G	A	2.421e^-4	0.879	UPSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5861575	2L_5861575_SNP [dm3] 2L_5861575_SNP [dm6]	T	C	2.426e^-4	0.879	SYNONYMOUS_CODING rau	TF binding site mE1_TFBS_cad
3L	7589517	3L_7589517_SNP [dm3] 3L_7596417_SNP [dm6]	A	T	2.428e^-4	0.879	UPSTREAM CG33275 INTRON CG33275
2R	7423300	2R_7423300_SNP [dm3] 2R_11535795_SNP [dm6]	T	A	2.428e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8830731	3R_8830731_SNP [dm3] 3R_13005009_SNP [dm6]	C	T	2.439e^-4	0.881	NON_SYNONYMOUS_CODING CG7518	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19186652	2R_19186652_SNP [dm3] 2R_23299129_SNP [dm6]	C	T	2.441e^-4	0.881	INTERGENIC
3R	17834628	3R_17834628_SNP [dm3] 3R_22008906_SNP [dm6]	A	G	2.457e^-4	0.881	UTR_3_PRIME Eip93F
3L	6428366	3L_6428366_SNP [dm3] 3L_6435266_SNP [dm6]	A	G	2.458e^-4	0.881	INTRON CG42747	TF binding site mE1_TFBS_cad
X	19472772	X_19472772_SNP [dm3] X_19578739_SNP [dm6]	T	A	2.460e^-4	0.881	UPSTREAM Tao INTRON Tao	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19499547	2R_19499547_SNP [dm3] 2R_23612024_SNP [dm6]	A	G	2.471e^-4	0.881	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14172307	2R_14172307_SNP [dm3] 2R_18284802_SNP [dm6]	T	A	2.473e^-4	0.881	DOWNSTREAM sbb INTRON sbb
2L	16622973	2L_16622973_SNP [dm3] 2L_16622973_SNP [dm6]	G	A	2.486e^-4	0.881	INTRON CG42389
3R	19214550	3R_19214550_SNP [dm3] 3R_23388828_SNP [dm6]	A	G	2.490e^-4	0.881	NON_SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7637570	2R_7637570_SNP [dm3] 2R_11750065_SNP [dm6]	A	T	2.498e^-4	0.881	INTERGENIC
2L	11479796	2L_11479796_SNP [dm3] 2L_11479796_SNP [dm6]	G	A	2.504e^-4	0.881	INTERGENIC
3L	14968151	3L_14968151_SNP [dm3] 3L_14975051_SNP [dm6]	A	G	2.508e^-4	0.881	UTR_5_PRIME Ocho UPSTREAM Ocho	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13115107	3R_13115107_SNP [dm3] 3R_17289385_SNP [dm6]	A	T	2.511e^-4	0.881	DOWNSTREAM CR43490 INTERGENIC
2L	7432047	2L_7432047_SNP [dm3] 2L_7432047_SNP [dm6]	G	A	2.523e^-4	0.881	INTRON CG5958
3L	11045439	3L_11045439_SNP [dm3] 3L_11052339_SNP [dm6]	T	A	2.524e^-4	0.881	UPSTREAM CG43693 INTERGENIC
2R	13533788	2R_13533788_SNP [dm3] 2R_17646283_SNP [dm6]	T	G	2.527e^-4	0.881	DOWNSTREAM CCHa1-R INTERGENIC
2R	19185489	2R_19185489_SNP [dm3] 2R_23297966_SNP [dm6]	T	C	2.529e^-4	0.881	INTERGENIC
2R	10715611	2R_10715611_INS [dm3] 2R_14828106_INS [dm6]	T	TTTTTTATTTT...	2.540e^-4	0.881	INTERGENIC
2R	7007519	2R_7007519_DEL [dm3] 2R_11120014_DEL [dm6]	TT	T	2.551e^-4	0.881	UTR_3_PRIME Cyp12d1-p
3R	19524622	3R_19524622_SNP [dm3] 3R_23698900_SNP [dm6]	T	A	2.557e^-4	0.881	START_GAINED prt UTR_5_PRIME prt DOWNSTREAM CG31468	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11057106	2R_11057106_SNP [dm3] 2R_15169601_SNP [dm6]	C	A	2.559e^-4	0.881	INTRON igl
2L	1243266	2L_1243266_SNP [dm3] 2L_1243266_SNP [dm6]	G	T	2.560e^-4	0.881	DOWNSTREAM CG5397 INTERGENIC
2R	20128488	2R_20128488_SNP [dm3] 2R_24240965_SNP [dm6]	T	A	2.566e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20900739	X_20900739_SNP [dm3] X_21029712_SNP [dm6]	T	A	2.570e^-4	0.881	UTR_3_PRIME CG1529 DOWNSTREAM CG1529
3R	22406471	3R_22406471_SNP [dm3] 3R_26580749_SNP [dm6]	G	A	2.571e^-4	0.881	SYNONYMOUS_CODING scrib	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6706434	2L_6706434_SNP [dm3] 2L_6706434_SNP [dm6]	A	G	2.581e^-4	0.881	INTRON Tsp
2R	16282087	2R_16282087_SNP [dm3] 2R_20394582_SNP [dm6]	G	A	2.583e^-4	0.881	INTERGENIC
3L	4490465	3L_4490465_SNP [dm3] 3L_4490465_SNP [dm6]	C	T	2.583e^-4	0.881	INTRON CG13722
2L	9626708	2L_9626708_SNP [dm3] 2L_9626708_SNP [dm6]	T	C	2.595e^-4	0.881	INTERGENIC
3R	3690089	3R_3690089_SNP [dm3] 3R_7864367_SNP [dm6]	C	T	2.596e^-4	0.881	SYNONYMOUS_CODING CG17816
3L	16216564	3L_16216564_SNP [dm3] 3L_16223464_SNP [dm6]	T	C	2.597e^-4	0.881	INTERGENIC
X	14247752	X_14247752_SNP [dm3] X_14353719_SNP [dm6]	C	T	2.601e^-4	0.881	INTRON dpr8
2R	19123949	2R_19123949_SNP [dm3] 2R_23236426_SNP [dm6]	G	T	2.604e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17243314	2L_17243314_SNP [dm3] 2L_17243314_SNP [dm6]	G	A	2.607e^-4	0.881	INTRON beat-IIIc
2L	6479341	2L_6479341_SNP [dm3] 2L_6479341_SNP [dm6]	A	G	2.608e^-4	0.881	INTRON Sec61alpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	8560916	3R_8560916_SNP [dm3] 3R_12735194_SNP [dm6]	G	A	2.610e^-4	0.881	INTERGENIC
3R	21016975	3R_21016975_SNP [dm3] 3R_25191253_SNP [dm6]	C	T	2.614e^-4	0.881	SYNONYMOUS_CODING dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8136731	3R_8136731_SNP [dm3] 3R_12311009_SNP [dm6]	T	C	2.622e^-4	0.881	UPSTREAM CG4066 INTERGENIC
2R	19123769	2R_19123769_SNP [dm3] 2R_23236246_SNP [dm6]	A	G	2.625e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18283184	2R_18283184_SNP [dm3] 2R_22395679_SNP [dm6]	A	C	2.627e^-4	0.881	INTRON babos
3L	1288381	3L_1288381_SNP [dm3] 3L_1288381_SNP [dm6]	C	G	2.637e^-4	0.881	DOWNSTREAM CG32333 INTRON CG32333
X	14237922	X_14237922_SNP [dm3] X_14343889_SNP [dm6]	A	G	2.662e^-4	0.881	INTRON dpr8
2R	8461001	2R_8461001_SNP [dm3] 2R_12573496_SNP [dm6]	A	G	2.671e^-4	0.881	SYNONYMOUS_CODING ClC-b	TF binding site mE1_TFBS_sens
3R	13140462	3R_13140462_SNP [dm3] 3R_17314740_SNP [dm6]	C	T	2.672e^-4	0.881	INTERGENIC
3R	17959395	3R_17959395_SNP [dm3] 3R_22133673_SNP [dm6]	C	A	2.673e^-4	0.881	UPSTREAM SKIP DOWNSTREAM CG42390 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	15780533	2L_15780533_SNP [dm3] 2L_15780533_SNP [dm6]	T	C	2.674e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	27094586	3R_27094586_INS [dm3] 3R_31268864_INS [dm6]	C	CAAAGGGTGTCAA...	2.675e^-4	0.881	DOWNSTREAM ppk24 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22198493	3R_22198493_SNP [dm3] 3R_26372771_SNP [dm6]	A	G	2.688e^-4	0.881	INTERGENIC
2L	5773838	2L_5773838_SNP [dm3] 2L_5773838_SNP [dm6]	G	A	2.692e^-4	0.881	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3493336	2L_3493336_SNP [dm3] 2L_3493336_SNP [dm6]	C	G	2.694e^-4	0.881	DOWNSTREAM tim INTERGENIC
3L	742118	3L_742118_SNP [dm3] 3L_742118_SNP [dm6]	C	A	2.703e^-4	0.881	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19804942	2L_19804942_SNP [dm3] 2L_19804942_SNP [dm6]	A	C	2.704e^-4	0.881	INTRON sick	TF binding site mE1_TFBS_cad
2L	3193130	2L_3193130_SNP [dm3] 2L_3193130_SNP [dm6]	G	A	2.710e^-4	0.881	INTRON CG34393
2L	7431719	2L_7431719_SNP [dm3] 2L_7431719_SNP [dm6]	G	C	2.710e^-4	0.881	INTRON CG5958
2L	2502269	2L_2502269_SNP [dm3] 2L_2502269_SNP [dm6]	G	A	2.717e^-4	0.881	INTERGENIC
3L	12542838	3L_12542838_SNP [dm3] 3L_12549738_SNP [dm6]	C	T	2.721e^-4	0.881	INTRON sowah
3R	8563539	3R_8563539_SNP [dm3] 3R_12737817_SNP [dm6]	T	G	2.723e^-4	0.881	INTERGENIC
X	14239832	X_14239832_SNP [dm3] X_14345799_SNP [dm6]	C	T	2.733e^-4	0.881	INTRON dpr8
X	14237716	X_14237716_SNP [dm3] X_14343683_SNP [dm6]	T	A	2.737e^-4	0.881	INTRON dpr8
3R	8477635	3R_8477635_SNP [dm3] 3R_12651913_SNP [dm6]	T	A	2.749e^-4	0.881	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7776112	2R_7776112_SNP [dm3] 2R_11888607_SNP [dm6]	C	T	2.752e^-4	0.881	SYNONYMOUS_CODING ERp60
3R	8939526	3R_8939526_SNP [dm3] 3R_13113804_SNP [dm6]	A	G	2.753e^-4	0.881	INTRON timeout
3R	19552106	3R_19552106_SNP [dm3] 3R_23726384_SNP [dm6]	G	T	2.757e^-4	0.881	INTRON CG10365
2L	14249499	2L_14249499_SNP [dm3] 2L_14249499_SNP [dm6]	T	C	2.761e^-4	0.881	INTERGENIC
2R	7410577	2R_7410577_SNP [dm3] 2R_11523072_SNP [dm6]	C	G	2.761e^-4	0.881	DOWNSTREAM en INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	15769435	2L_15769435_SNP [dm3] 2L_15769435_SNP [dm6]	G	A	2.761e^-4	0.881	SYNONYMOUS_CODING Ku80
3R	23537152	3R_23537152_SNP [dm3] 3R_27711430_SNP [dm6]	T	C	2.762e^-4	0.881	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14853784	2R_14853784_SNP [dm3] 2R_18966279_SNP [dm6]	G	A	2.777e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3011637	2L_3011637_SNP [dm3] 2L_3011637_SNP [dm6]	A	G	2.779e^-4	0.881	INTRON CG17265
X	16352790	X_16352790_SNP [dm3] X_16458757_SNP [dm6]	G	T	2.785e^-4	0.881	UTR_3_PRIME para DOWNSTREAM para	TF binding site BDTNP1_TFBS_dl
3L	16442865	3L_16442865_SNP [dm3] 3L_16449765_SNP [dm6]	A	G	2.791e^-4	0.881	INTRON CG33158 & 1 other
2L	9631885	2L_9631885_SNP [dm3] 2L_9631885_SNP [dm6]	T	A	2.800e^-4	0.881	INTERGENIC
2R	14854180	2R_14854180_SNP [dm3] 2R_18966675_SNP [dm6]	A	G	2.802e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18203187	3L_18203187_SNP [dm3] 3L_18210087_SNP [dm6]	T	C	2.803e^-4	0.881	INTERGENIC
X	866389	X_866389_SNP [dm3] X_972356_SNP [dm6]	C	A	2.806e^-4	0.881	INTERGENIC
3R	8337236	3R_8337236_SNP [dm3] 3R_12511514_SNP [dm6]	C	T	2.806e^-4	0.881	DOWNSTREAM Octbeta3R & 1 other INTERGENIC
3L	12064855	3L_12064855_SNP [dm3] 3L_12071755_SNP [dm6]	C	T	2.806e^-4	0.881	SYNONYMOUS_CODING Sema-5c	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8115292	3R_8115292_SNP [dm3] 3R_12289570_SNP [dm6]	T	A	2.818e^-4	0.881	INTRON svp	TF binding site mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
3L	14507851	3L_14507851_SNP [dm3] 3L_14514751_SNP [dm6]	G	T	2.819e^-4	0.881	INTRON bbg
X	19471841	X_19471841_SNP [dm3] X_19577808_SNP [dm6]	T	A	2.830e^-4	0.881	INTRON Tao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	15208234	3L_15208234_SNP [dm3] 3L_15215134_SNP [dm6]	C	T	2.830e^-4	0.881	INTERGENIC
X	9101126	X_9101126_SNP [dm3] X_9207093_SNP [dm6]	T	G	2.839e^-4	0.881	INTRON CG12119
2R	7000259	2R_7000259_SNP [dm3] 2R_11112754_SNP [dm6]	C	T	2.843e^-4	0.881	INTRON luna
X	8433217	X_8433217_SNP [dm3] X_8539184_SNP [dm6]	T	C	2.849e^-4	0.881	INTRON Nrg
3R	8867862	3R_8867862_SNP [dm3] 3R_13042140_SNP [dm6]	C	T	2.852e^-4	0.881	NON_SYNONYMOUS_CODING CG11670 UPSTREAM snk INTRON snk	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	14168901	2R_14168901_SNP [dm3] 2R_18281396_SNP [dm6]	A	G	2.857e^-4	0.881	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19469676	X_19469676_SNP [dm3] X_19575643_SNP [dm6]	G	T	2.877e^-4	0.881	SYNONYMOUS_CODING Tao	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11105998	2R_11105998_SNP [dm3] 2R_15218493_SNP [dm6]	G	A	2.878e^-4	0.881	SYNONYMOUS_CODING CG8079 UPSTREAM mRpL41 & 1 other DOWNSTREAM Hex-C	TF binding site BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	15014598	2L_15014598_SNP [dm3] 2L_15014598_SNP [dm6]	T	A	2.878e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16229840	3L_16229840_SNP [dm3] 3L_16236740_SNP [dm6]	G	A	2.886e^-4	0.881	UTR_3_PRIME l_3_72Dp UPSTREAM l_3_72Dr
2R	2057687	2R_2057687_SNP [dm3] 2R_6170182_SNP [dm6]	T	G	2.887e^-4	0.881	DOWNSTREAM tRNA:R2:42Ab INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19470050	X_19470050_SNP [dm3] X_19576017_SNP [dm6]	A	G	2.887e^-4	0.881	INTRON Tao	TF binding site mE1_TFBS_chinmo
3R	9889570	3R_9889570_SNP [dm3] 3R_14063848_SNP [dm6]	G	T	2.889e^-4	0.881	INTRON foxo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	10821595	2R_10821595_SNP [dm3] 2R_14934090_SNP [dm6]	T	A	2.890e^-4	0.881	UPSTREAM CG10253 DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12222007	2R_12222007_SNP [dm3] 2R_16334502_SNP [dm6]	A	G	2.892e^-4	0.881	UPSTREAM Vha44 INTRON Vha44
3L	5937616	3L_5937616_SNP [dm3] 3L_5944516_SNP [dm6]	T	C	2.893e^-4	0.881	INTRON CG33993
2R	17497083	2R_17497083_SNP [dm3] 2R_21609578_SNP [dm6]	T	C	2.904e^-4	0.881	INTRON CG15673
2L	5072800	2L_5072800_SNP [dm3] 2L_5072800_SNP [dm6]	A	G	2.905e^-4	0.881	UTR_3_PRIME pgant5 DOWNSTREAM RpL37A
2L	8629441	2L_8629441_SNP [dm3] 2L_8629441_SNP [dm6]	T	C	2.909e^-4	0.881	INTRON Sema-1a
2R	8856210	2R_8856210_SNP [dm3] 2R_12968705_SNP [dm6]	G	T	2.910e^-4	0.881	SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12823475	2R_12823475_SNP [dm3] 2R_16935970_SNP [dm6]	T	G	2.941e^-4	0.881	INTRON Pkc53E
3R	13140483	3R_13140483_SNP [dm3] 3R_17314761_SNP [dm6]	G	C	2.944e^-4	0.881	INTERGENIC
3R	8265539	3R_8265539_SNP [dm3] 3R_12439817_SNP [dm6]	G	T	2.945e^-4	0.881	UPSTREAM CG17207 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
X	9476418	X_9476418_SNP [dm3] X_9582385_SNP [dm6]	C	G	2.948e^-4	0.881	UPSTREAM CR45540 INTERGENIC
X	15823040	X_15823040_INS [dm3] X_15929007_INS [dm6]	A	ATTTATTAA	2.964e^-4	0.881	UTR_3_PRIME Ranbp16 DOWNSTREAM Lcch3 INTRON Ranbp16
2R	9007271	2R_9007271_SNP [dm3] 2R_13119766_SNP [dm6]	C	T	2.967e^-4	0.881	INTRON CG13325
2R	17691191	2R_17691191_SNP [dm3] 2R_21803686_SNP [dm6]	G	C	2.969e^-4	0.881	EXON CR9284
3L	716207	3L_716207_SNP [dm3] 3L_716207_SNP [dm6]	G	C	2.971e^-4	0.881	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	9983186	3R_9983186_DEL [dm3] 3R_14157464_DEL [dm6]	TAAACTCAGAGCT...	T	2.978e^-4	0.881	UPSTREAM CG31533 DOWNSTREAM CG31327 INTERGENIC
2R	10813257	2R_10813257_SNP [dm3] 2R_14925752_SNP [dm6]	G	A	2.982e^-4	0.881	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11045440	3L_11045440_SNP [dm3] 3L_11052340_SNP [dm6]	C	A	2.988e^-4	0.881	UPSTREAM CG43693 INTERGENIC
2L	16108464	2L_16108464_SNP [dm3] 2L_16108464_SNP [dm6]	A	T	2.989e^-4	0.881	INTERGENIC
3L	17676767	3L_17676767_SNP [dm3] 3L_17683667_SNP [dm6]	A	T	2.996e^-4	0.881	DOWNSTREAM CG34251 INTERGENIC
2R	11954211	2R_11954211_SNP [dm3] 2R_16066706_SNP [dm6]	T	G	3.000e^-4	0.881	INTERGENIC
3R	19302503	3R_19302503_SNP [dm3] 3R_23476781_SNP [dm6]	A	G	3.001e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10487833	3L_10487833_SNP [dm3] 3L_10494733_SNP [dm6]	G	T	3.004e^-4	0.881	INTRON A2bp1
2L	19786659	2L_19786659_SNP [dm3] 2L_19786659_SNP [dm6]	A	C	3.014e^-4	0.881	INTRON CdGAPr
2R	19123954	2R_19123954_SNP [dm3] 2R_23236431_SNP [dm6]	C	T	3.018e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23129248	3R_23129248_SNP [dm3] 3R_27303526_SNP [dm6]	A	G	3.019e^-4	0.881	INTRON CG3339
3L	743355	3L_743355_SNP [dm3] 3L_743355_SNP [dm6]	A	G	3.021e^-4	0.881	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	14828785	2R_14828785_SNP [dm3] 2R_18941280_SNP [dm6]	T	C	3.022e^-4	0.881	INTRON sano
2L	9621702	2L_9621702_SNP [dm3] 2L_9621702_SNP [dm6]	T	A	3.031e^-4	0.881	SYNONYMOUS_CODING GlcAT-S
3R	18735555	3R_18735555_SNP [dm3] 3R_22909833_SNP [dm6]	C	T	3.031e^-4	0.881	INTRON klg
2R	8149736	2R_8149736_SNP [dm3] 2R_12262231_SNP [dm6]	T	C	3.035e^-4	0.881	INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_Trl
3L	6990233	3L_6990233_SNP [dm3] 3L_6997133_SNP [dm6]	G	A	3.035e^-4	0.881	INTERGENIC
3L	20784670	3L_20784670_SNP [dm3] 3L_20791570_SNP [dm6]	T	G	3.038e^-4	0.881	INTRON Six4
2L	15466740	2L_15466740_DEL [dm3] 2L_15466740_DEL [dm6]	TAT	T	3.048e^-4	0.881	INTERGENIC
2L	21200944	2L_21200944_SNP [dm3] 2L_21200944_SNP [dm6]	C	A	3.055e^-4	0.881	UPSTREAM CG31624 DOWNSTREAM CG31988 INTERGENIC	transposable element FlyBase
X	9496704	X_9496704_SNP [dm3] X_9602671_SNP [dm6]	T	C	3.056e^-4	0.881	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12858577	3L_12858577_SNP [dm3] 3L_12865477_SNP [dm6]	C	T	3.058e^-4	0.881	INTERGENIC
3L	14004766	3L_14004766_SNP [dm3] 3L_14011666_SNP [dm6]	C	A	3.061e^-4	0.881	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	14749962	X_14749962_SNP [dm3] X_14855929_SNP [dm6]	A	G	3.062e^-4	0.881	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad
3L	6396701	3L_6396701_SNP [dm3] 3L_6403601_SNP [dm6]	A	G	3.063e^-4	0.881	INTRON CG42747
2L	12458275	2L_12458275_SNP [dm3] 2L_12458275_SNP [dm6]	A	G	3.063e^-4	0.881	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16881535	3L_16881535_INS [dm3] 3L_16888435_INS [dm6]	A	AA	3.084e^-4	0.885	INTRON Lmpt
2R	6577161	2R_6577161_SNP [dm3] 2R_10689656_SNP [dm6]	C	T	3.089e^-4	0.885	INTRON stan
3R	14691342	3R_14691342_SNP [dm3] 3R_18865620_SNP [dm6]	C	T	3.090e^-4	0.885	INTERGENIC
2R	9715706	2R_9715706_SNP [dm3] 2R_13828201_SNP [dm6]	G	C	3.105e^-4	0.887	INTRON CG6329	TF binding site BDTNP1_TFBS_dl
3R	8563572	3R_8563572_SNP [dm3] 3R_12737850_SNP [dm6]	A	T	3.112e^-4	0.887	INTERGENIC
2L	901405	2L_901405_SNP [dm3] 2L_901405_SNP [dm6]	G	T	3.113e^-4	0.887	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	11024907	2R_11024907_SNP [dm3] 2R_15137402_SNP [dm6]	T	G	3.118e^-4	0.887	INTRON chn	TF binding site mE1_TFBS_inv
2L	3104137	2L_3104137_SNP [dm3] 2L_3104137_SNP [dm6]	A	G	3.124e^-4	0.887	INTRON toc
X	16863537	X_16863537_SNP [dm3] X_16969504_SNP [dm6]	T	A	3.127e^-4	0.887	UTR_3_PRIME CG45002 UPSTREAM CG9086	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3131350	3L_3131350_SNP [dm3] 3L_3131350_SNP [dm6]	A	G	3.138e^-4	0.888	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	901487	2L_901487_SNP [dm3] 2L_901487_SNP [dm6]	G	A	3.139e^-4	0.888	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	19776757	3R_19776757_SNP [dm3] 3R_23951035_SNP [dm6]	A	G	3.145e^-4	0.888	INTERGENIC
3R	9076317	3R_9076317_DEL [dm3] 3R_13250595_DEL [dm6]	AG	A	3.160e^-4	0.889	INTRON Ace
3R	14291048	3R_14291048_SNP [dm3] 3R_18465326_SNP [dm6]	G	A	3.162e^-4	0.889	INTRON fru
3R	11633552	3R_11633552_SNP [dm3] 3R_15807830_SNP [dm6]	G	A	3.162e^-4	0.889	INTRON alpha-Man-IIb	TF binding site BDTNP1_TFBS_da
2R	18608261	2R_18608261_SNP [dm3] 2R_22720756_SNP [dm6]	G	C	3.166e^-4	0.889	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22406480	3R_22406480_SNP [dm3] 3R_26580758_SNP [dm6]	A	G	3.169e^-4	0.889	SYNONYMOUS_CODING scrib	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9435430	3R_9435430_SNP [dm3] 3R_13609708_SNP [dm6]	A	T	3.202e^-4	0.896	UPSTREAM CG9759 INTERGENIC
2R	12765710	2R_12765710_SNP [dm3] 2R_16878205_SNP [dm6]	G	C	3.205e^-4	0.896	INTRON CG8910	TF binding site mE1_TFBS_cad
3R	8563571	3R_8563571_SNP [dm3] 3R_12737849_SNP [dm6]	T	A	3.215e^-4	0.897	INTERGENIC
2L	13134483	2L_13134483_SNP [dm3] 2L_13134483_SNP [dm6]	T	C	3.229e^-4	0.897	SYNONYMOUS_CODING CG5122
3L	12561426	3L_12561426_SNP [dm3] 3L_12568326_SNP [dm6]	T	G	3.238e^-4	0.897	INTRON sowah
2L	14521126	2L_14521126_DEL [dm3] 2L_14521126_DEL [dm6]	ATTTATA	A	3.238e^-4	0.897	INTERGENIC
X	10276880	X_10276880_INS [dm3] X_10382847_INS [dm6]	A	AC	3.244e^-4	0.897	UTR_3_PRIME CG17841 DOWNSTREAM Psf3
2L	13328535	2L_13328535_SNP [dm3] 2L_13328535_SNP [dm6]	C	A	3.244e^-4	0.897	INTRON CG43778
2R	17691151	2R_17691151_SNP [dm3] 2R_21803646_SNP [dm6]	T	C	3.244e^-4	0.897	EXON CR9284
2R	19406808	2R_19406808_SNP [dm3] 2R_23519285_SNP [dm6]	T	A	3.249e^-4	0.897	DOWNSTREAM RabX1 INTERGENIC
2R	16307740	2R_16307740_SNP [dm3] 2R_20420235_SNP [dm6]	G	A	3.252e^-4	0.897	INTERGENIC
2L	13677973	2L_13677973_DEL [dm3] 2L_13677973_DEL [dm6]	AC	A	3.271e^-4	0.898	UTR_3_PRIME CG31814 DOWNSTREAM CG31814
3L	18612094	3L_18612094_INS [dm3] 3L_18618994_INS [dm6]	A	AGTAGG	3.273e^-4	0.898	UTR_3_PRIME not DOWNSTREAM tRNA:CR32200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14216634	2R_14216634_SNP [dm3] 2R_18329129_SNP [dm6]	A	G	3.274e^-4	0.898	INTRON sbb
2L	13920110	2L_13920110_SNP [dm3] 2L_13920110_SNP [dm6]	T	G	3.274e^-4	0.898	DOWNSTREAM CG16886 INTRON Ance-3
2L	19760760	2L_19760760_SNP [dm3] 2L_19760760_SNP [dm6]	C	T	3.289e^-4	0.898	SYNONYMOUS_CODING CG10463 DOWNSTREAM fbp	TF binding site mE1_TFBS_cad
2R	15144425	2R_15144425_SNP [dm3] 2R_19256920_SNP [dm6]	T	A	3.295e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
X	8639245	X_8639245_SNP [dm3] X_8745212_SNP [dm6]	A	T	3.296e^-4	0.898	INTERGENIC
2L	8240137	2L_8240137_SNP [dm3] 2L_8240137_SNP [dm6]	A	G	3.310e^-4	0.898	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	19509734	2R_19509734_SNP [dm3] 2R_23622211_SNP [dm6]	T	C	3.311e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11139121	2R_11139121_SNP [dm3] 2R_15251616_SNP [dm6]	A	G	3.317e^-4	0.898	INTRON scb
X	18995387	X_18995387_SNP [dm3] X_19101354_SNP [dm6]	T	A	3.335e^-4	0.898	INTERGENIC
2L	6482100	2L_6482100_SNP [dm3] 2L_6482100_SNP [dm6]	G	A	3.346e^-4	0.898	NON_SYNONYMOUS_CODING DLP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	12542844	3L_12542844_SNP [dm3] 3L_12549744_SNP [dm6]	T	C	3.347e^-4	0.898	INTRON sowah
3L	12425510	3L_12425510_SNP [dm3] 3L_12432410_SNP [dm6]	T	C	3.355e^-4	0.898	UTR_5_PRIME toe	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	19597537	X_19597537_SNP [dm3] X_19703504_SNP [dm6]	C	G	3.355e^-4	0.898	NON_SYNONYMOUS_CODING CG14232 UPSTREAM CG14230	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19131441	3R_19131441_SNP [dm3] 3R_23305719_SNP [dm6]	C	A	3.355e^-4	0.898	INTRON pnt
3R	10841607	3R_10841607_SNP [dm3] 3R_15015885_SNP [dm6]	C	T	3.370e^-4	0.898	UTR_3_PRIME CG14861
3L	11706773	3L_11706773_SNP [dm3] 3L_11713673_SNP [dm6]	A	T	3.385e^-4	0.898	INTRON CG14132
X	15271833	X_15271833_SNP [dm3] X_15377800_SNP [dm6]	A	G	3.385e^-4	0.898	INTRON acj6
X	17668112	X_17668112_SNP [dm3] X_17774079_SNP [dm6]	C	T	3.390e^-4	0.898	INTRON unc-4	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1711120	2L_1711120_SNP [dm3] 2L_1711120_SNP [dm6]	G	A	3.392e^-4	0.898	SYNONYMOUS_CODING mRpL48 UPSTREAM CG17660 DOWNSTREAM frtz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14004795	3L_14004795_SNP [dm3] 3L_14011695_SNP [dm6]	T	G	3.395e^-4	0.898	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	12216278	3L_12216278_SNP [dm3] 3L_12223178_SNP [dm6]	G	T	3.395e^-4	0.898	INTRON app
X	9476270	X_9476270_SNP [dm3] X_9582237_SNP [dm6]	A	G	3.398e^-4	0.898	UPSTREAM CR45540 INTERGENIC
2R	13425196	2R_13425196_SNP [dm3] 2R_17537691_SNP [dm6]	T	C	3.400e^-4	0.898	SYNONYMOUS_CODING eIF3-S9	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3128791	2L_3128791_SNP [dm3] 2L_3128791_SNP [dm6]	T	C	3.400e^-4	0.898	SYNONYMOUS_CODING CG15403 INTRON toc
2R	2036973	2R_2036973_SNP [dm3] 2R_6149468_SNP [dm6]	C	G	3.408e^-4	0.898	INTRON EcR
2R	19593546	2R_19593546_SNP [dm3] 2R_23706023_SNP [dm6]	T	C	3.416e^-4	0.898	SYNONYMOUS_CODING l_2_not UPSTREAM l_2_tid DOWNSTREAM l_2_dtl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17212144	2L_17212144_SNP [dm3] 2L_17212144_SNP [dm6]	T	A	3.424e^-4	0.898	INTRON beat-IIIc
2R	11302147	2R_11302147_SNP [dm3] 2R_15414642_SNP [dm6]	A	T	3.424e^-4	0.898	INTRON CG43729
X	15148393	X_15148393_SNP [dm3] X_15254360_SNP [dm6]	T	C	3.424e^-4	0.898	INTERGENIC
2R	12854447	2R_12854447_SNP [dm3] 2R_16966942_SNP [dm6]	G	T	3.426e^-4	0.898	INTERGENIC
X	4707004	X_4707004_SNP [dm3] X_4812971_SNP [dm6]	A	T	3.428e^-4	0.898	INTERGENIC
3L	18612093	3L_18612093_SNP [dm3] 3L_18618993_SNP [dm6]	A	T	3.439e^-4	0.898	UTR_3_PRIME not DOWNSTREAM tRNA:CR32200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25810637	3R_25810637_SNP [dm3] 3R_29984915_SNP [dm6]	A	G	3.441e^-4	0.898	INTRON CG7896
2L	14258886	2L_14258886_DEL [dm3] 2L_14258886_DEL [dm6]	AAT	A	3.446e^-4	0.898	INTERGENIC
2R	16288282	2R_16288282_SNP [dm3] 2R_20400777_SNP [dm6]	A	C	3.452e^-4	0.898	INTERGENIC
2R	6191881	2R_6191881_SNP [dm3] 2R_10304376_SNP [dm6]	A	G	3.453e^-4	0.898	UTR_5_PRIME CAP INTRON CAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19472911	X_19472911_SNP [dm3] X_19578878_SNP [dm6]	A	G	3.455e^-4	0.898	UPSTREAM Tao INTRON Tao	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	16934783	3R_16934783_SNP [dm3] 3R_21109061_SNP [dm6]	C	A	3.470e^-4	0.898	INTRON rtet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14554787	2L_14554787_SNP [dm3] 2L_14554787_SNP [dm6]	C	T	3.480e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	8560966	3R_8560966_SNP [dm3] 3R_12735244_SNP [dm6]	A	T	3.483e^-4	0.898	INTERGENIC
3L	1249982	3L_1249982_SNP [dm3] 3L_1249982_SNP [dm6]	T	C	3.491e^-4	0.898	SYNONYMOUS_CODING Sac1 UPSTREAM CG9129
3L	12209907	3L_12209907_DEL [dm3] 3L_12216807_DEL [dm6]	CCTTACTCCTA...	C	3.493e^-4	0.898	INTRON app
X	6409164	X_6409164_SNP [dm3] X_6515131_SNP [dm6]	G	C	3.500e^-4	0.898	INTRON CG42340
3R	24412216	3R_24412216_SNP [dm3] 3R_28586494_SNP [dm6]	C	A	3.509e^-4	0.898	EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3L	6396662	3L_6396662_SNP [dm3] 3L_6403562_SNP [dm6]	A	G	3.511e^-4	0.898	INTRON CG42747
3L	9701983	3L_9701983_SNP [dm3] 3L_9708883_SNP [dm6]	T	C	3.516e^-4	0.898	SYNONYMOUS_CODING CG16711 UTR_3_PRIME CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8477652	3R_8477652_SNP [dm3] 3R_12651930_SNP [dm6]	G	T	3.517e^-4	0.898	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14881265	X_14881265_SNP [dm3] X_14987232_SNP [dm6]	C	T	3.521e^-4	0.898	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	6395564	3L_6395564_SNP [dm3] 3L_6402464_SNP [dm6]	G	A	3.538e^-4	0.898	INTRON CG42747
2L	19761352	2L_19761352_SNP [dm3] 2L_19761352_SNP [dm6]	A	T	3.546e^-4	0.898	DOWNSTREAM fbp & 1 other INTERGENIC
3R	17934779	3R_17934779_SNP [dm3] 3R_22109057_SNP [dm6]	A	G	3.556e^-4	0.898	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9030585	2R_9030585_SNP [dm3] 2R_13143080_SNP [dm6]	G	A	3.558e^-4	0.898	UTR_3_PRIME Ack-like DOWNSTREAM Cap-G
3R	20889786	3R_20889786_SNP [dm3] 3R_25064064_SNP [dm6]	G	C	3.558e^-4	0.898	SYNONYMOUS_CODING Unc-13-4B DOWNSTREAM veli	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	8443497	2R_8443497_SNP [dm3] 2R_12555992_SNP [dm6]	T	A	3.564e^-4	0.898	INTRON fra
3R	10552778	3R_10552778_SNP [dm3] 3R_14727056_SNP [dm6]	T	A	3.564e^-4	0.898	INTRON CG7530
3R	22408889	3R_22408889_SNP [dm3] 3R_26583167_SNP [dm6]	G	A	3.565e^-4	0.898	UTR_3_PRIME scrib INTRON scrib
2L	901470	2L_901470_SNP [dm3] 2L_901470_SNP [dm6]	T	A	3.569e^-4	0.898	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11954409	2R_11954409_SNP [dm3] 2R_16066904_SNP [dm6]	C	A	3.572e^-4	0.898	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14334693	2L_14334693_SNP [dm3] 2L_14334693_SNP [dm6]	A	C	3.580e^-4	0.898	DOWNSTREAM ms_2_34Fe INTRON CG33090
2L	16622959	2L_16622959_SNP [dm3] 2L_16622959_SNP [dm6]	C	T	3.582e^-4	0.898	INTRON CG42389
2R	11891718	2R_11891718_SNP [dm3] 2R_16004213_SNP [dm6]	C	G	3.583e^-4	0.898	SYNONYMOUS_CODING CG8370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	15144443	2R_15144443_SNP [dm3] 2R_19256938_SNP [dm6]	T	G	3.585e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2L	15749205	2L_15749205_SNP [dm3] 2L_15749205_SNP [dm6]	A	G	3.601e^-4	0.898	DOWNSTREAM l_2_35Di & 1 other INTERGENIC
3R	22990390	3R_22990390_SNP [dm3] 3R_27164668_SNP [dm6]	C	T	3.606e^-4	0.898	SYNONYMOUS_CODING ppk31 DOWNSTREAM CG34293	regulatory region REDfly_CRMs
3R	18918793	3R_18918793_SNP [dm3] 3R_23093071_SNP [dm6]	G	A	3.609e^-4	0.898	UPSTREAM CG17110 INTRON CG13830 & 2 others	TF binding site mE1_TFBS_cad
2R	5430457	2R_5430457_SNP [dm3] 2R_9542952_SNP [dm6]	G	T	3.611e^-4	0.898	UTR_3_PRIME CG1888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4110752	3L_4110752_SNP [dm3] 3L_4110752_SNP [dm6]	G	T	3.615e^-4	0.898	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	6428331	3L_6428331_SNP [dm3] 3L_6435231_SNP [dm6]	T	G	3.626e^-4	0.898	INTRON CG42747	TF binding site mE1_TFBS_cad
2L	15342206	2L_15342206_SNP [dm3] 2L_15342206_SNP [dm6]	A	T	3.632e^-4	0.898	INTERGENIC
2L	13272283	2L_13272283_SNP [dm3] 2L_13272283_SNP [dm6]	T	A	3.644e^-4	0.898	SYNONYMOUS_CODING CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8744873	2L_8744873_SNP [dm3] 2L_8744873_SNP [dm6]	G	C	3.647e^-4	0.898	INTERGENIC
2L	17604066	2L_17604066_SNP [dm3] 2L_17604066_SNP [dm6]	A	C	3.647e^-4	0.898	UTR_3_PRIME Sytalpha DOWNSTREAM Sytalpha
2R	18035787	2R_18035787_SNP [dm3] 2R_22148282_SNP [dm6]	C	T	3.651e^-4	0.898	INTRON a
2R	14630975	2R_14630975_SNP [dm3] 2R_18743470_SNP [dm6]	G	A	3.654e^-4	0.898	NON_SYNONYMOUS_CODING CG18609 DOWNSTREAM CG17821 INTRON Hs3st-A	TF binding site mE1_TFBS_HSA
2L	8334186	2L_8334186_SNP [dm3] 2L_8334186_SNP [dm6]	C	T	3.656e^-4	0.898	INTERGENIC
2R	3801819	2R_3801819_SNP [dm3] 2R_7914314_SNP [dm6]	G	C	3.661e^-4	0.898	DOWNSTREAM CG12159 INTRON CG30377
2L	10065867	2L_10065867_SNP [dm3] 2L_10065867_SNP [dm6]	G	A	3.666e^-4	0.898	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13533793	2R_13533793_INS [dm3] 2R_17646288_INS [dm6]	A	ACACAATCTACCA...	3.670e^-4	0.898	DOWNSTREAM CCHa1-R INTERGENIC
2R	13553108	2R_13553108_SNP [dm3] 2R_17665603_SNP [dm6]	T	A	3.672e^-4	0.898	UPSTREAM eIF3-S8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17955636	3R_17955636_SNP [dm3] 3R_22129914_SNP [dm6]	G	A	3.673e^-4	0.898	SYNONYMOUS_CODING CG42390
2R	17322585	2R_17322585_SNP [dm3] 2R_21435080_SNP [dm6]	C	A	3.676e^-4	0.898	INTRON Sdc
3R	24411336	3R_24411336_SNP [dm3] 3R_28585614_SNP [dm6]	C	T	3.677e^-4	0.898	UPSTREAM MRE23 & 1 other INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12936837	3R_12936837_SNP [dm3] 3R_17111115_SNP [dm6]	G	A	3.678e^-4	0.898	INTRON cher	TF binding site mE1_TFBS_cad
2L	7319852	2L_7319852_SNP [dm3] 2L_7319852_SNP [dm6]	A	G	3.678e^-4	0.898	INTERGENIC
X	9456217	X_9456217_SNP [dm3] X_9562184_SNP [dm6]	G	T	3.685e^-4	0.898	INTRON Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20707058	2L_20707058_SNP [dm3] 2L_20707058_SNP [dm6]	C	A	3.689e^-4	0.898	INTRON Hr38	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3239203	2L_3239203_SNP [dm3] 2L_3239203_SNP [dm6]	T	C	3.690e^-4	0.898	INTERGENIC
3L	11921116	3L_11921116_SNP [dm3] 3L_11928016_SNP [dm6]	C	T	3.698e^-4	0.898	UTR_5_PRIME byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8601728	3L_8601728_SNP [dm3] 3L_8608628_SNP [dm6]	G	T	3.722e^-4	0.898	UTR_5_PRIME CG6282 INTRON CG6282
2L	8073533	2L_8073533_SNP [dm3] 2L_8073533_SNP [dm6]	G	C	3.724e^-4	0.898	SYNONYMOUS_CODING Trf UPSTREAM MED20 DOWNSTREAM Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	16973387	3L_16973387_SNP [dm3] 3L_16980287_SNP [dm6]	C	A	3.727e^-4	0.898	INTRON Exn
3L	13605264	3L_13605264_SNP [dm3] 3L_13612164_SNP [dm6]	G	A	3.730e^-4	0.898	INTRON bru-3
3R	13117061	3R_13117061_SNP [dm3] 3R_17291339_SNP [dm6]	C	A	3.738e^-4	0.898	INTERGENIC
2L	4466547	2L_4466547_SNP [dm3] 2L_4466547_SNP [dm6]	T	C	3.742e^-4	0.898	SYNONYMOUS_CODING CG17840	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16124819	2R_16124819_SNP [dm3] 2R_20237314_SNP [dm6]	A	C	3.744e^-4	0.898	SYNONYMOUS_CODING CG11099
3R	17959303	3R_17959303_SNP [dm3] 3R_22133581_SNP [dm6]	T	A	3.746e^-4	0.898	UPSTREAM SKIP DOWNSTREAM CG42390 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13064550	3L_13064550_SNP [dm3] 3L_13071450_SNP [dm6]	T	G	3.749e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9072127	2L_9072127_SNP [dm3] 2L_9072127_SNP [dm6]	T	A	3.759e^-4	0.898	UPSTREAM CG31708 DOWNSTREAM CR44483 INTERGENIC
3R	1417985	3R_1417985_SNP [dm3] 3R_5592263_SNP [dm6]	A	G	3.765e^-4	0.898	UPSTREAM noi INTRON Vha26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	15993469	X_15993469_SNP [dm3] X_16099436_SNP [dm6]	G	C	3.771e^-4	0.898	SYNONYMOUS_CODING CG42353 UTR_5_PRIME CG42354	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9271117	2R_9271117_SNP [dm3] 2R_13383612_SNP [dm6]	C	A	3.779e^-4	0.898	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12897480	3L_12897480_SNP [dm3] 3L_12904380_SNP [dm6]	C	T	3.783e^-4	0.898	UPSTREAM CG32117 INTERGENIC
2R	5018273	2R_5018273_INS [dm3] 2R_9130768_INS [dm6]	T	TCGG	3.785e^-4	0.898	INTRON CG18659	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	3976882	X_3976882_SNP [dm3] X_4082849_SNP [dm6]	G	C	3.785e^-4	0.898	SYNONYMOUS_CODING CG43689
3L	2440622	3L_2440622_SNP [dm3] 3L_2440622_SNP [dm6]	T	C	3.810e^-4	0.898	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_inv
X	9887312	X_9887312_SNP [dm3] X_9993279_SNP [dm6]	T	A	3.813e^-4	0.898	INTRON CG32694
3L	18612092	3L_18612092_SNP [dm3] 3L_18618992_SNP [dm6]	C	G	3.816e^-4	0.898	UTR_3_PRIME not DOWNSTREAM tRNA:CR32200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10045498	2L_10045498_SNP [dm3] 2L_10045498_SNP [dm6]	G	A	3.820e^-4	0.898	INTERGENIC
2L	5408567	2L_5408567_SNP [dm3] 2L_5408567_SNP [dm6]	C	T	3.823e^-4	0.898	INTRON H15	TF binding site mE1_TFBS_cad
2R	16356816	2R_16356816_SNP [dm3] 2R_20469311_SNP [dm6]	T	C	3.827e^-4	0.898	INTRON CG12484
3R	17959362	3R_17959362_SNP [dm3] 3R_22133640_SNP [dm6]	G	T	3.835e^-4	0.898	UPSTREAM SKIP DOWNSTREAM CG42390 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9974637	2R_9974637_SNP [dm3] 2R_14087132_SNP [dm6]	C	T	3.842e^-4	0.898	INTRON Prosap
3R	18580957	3R_18580957_SNP [dm3] 3R_22755235_SNP [dm6]	T	A	3.846e^-4	0.898	UTR_5_PRIME CG7029 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	23127176	3R_23127176_SNP [dm3] 3R_27301454_SNP [dm6]	T	A	3.850e^-4	0.898	INTRON CG3339	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	20128491	2R_20128491_SNP [dm3] 2R_24240968_SNP [dm6]	G	A	3.856e^-4	0.898	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16054800	2R_16054800_SNP [dm3] 2R_20167295_SNP [dm6]	C	G	3.856e^-4	0.898	INTERGENIC
3L	14147587	3L_14147587_SNP [dm3] 3L_14154487_SNP [dm6]	T	C	3.857e^-4	0.898	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27094694	3R_27094694_SNP [dm3] 3R_31268972_SNP [dm6]	A	T	3.861e^-4	0.898	DOWNSTREAM ppk24 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17497097	2R_17497097_SNP [dm3] 2R_21609592_SNP [dm6]	G	A	3.866e^-4	0.898	INTRON CG15673
2L	14914635	2L_14914635_SNP [dm3] 2L_14914635_SNP [dm6]	G	A	3.868e^-4	0.898	INTRON CG42313
2R	10856742	2R_10856742_SNP [dm3] 2R_14969237_SNP [dm6]	C	G	3.876e^-4	0.898	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6431927	3L_6431927_SNP [dm3] 3L_6438827_SNP [dm6]	G	A	3.879e^-4	0.898	INTRON CG42747
2L	19811252	2L_19811252_SNP [dm3] 2L_19811252_SNP [dm6]	T	A	3.885e^-4	0.898	DOWNSTREAM snRNA:U4:38AB & 1 other INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	17833711	3R_17833711_SNP [dm3] 3R_22007989_SNP [dm6]	G	A	3.886e^-4	0.898	UTR_3_PRIME Eip93F
3L	2210570	3L_2210570_SNP [dm3] 3L_2210570_SNP [dm6]	T	A	3.887e^-4	0.898	DOWNSTREAM CG15878 INTERGENIC
X	16073980	X_16073980_SNP [dm3] X_16179947_SNP [dm6]	G	A	3.890e^-4	0.898	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8848329	3R_8848329_SNP [dm3] 3R_13022607_SNP [dm6]	G	C	3.897e^-4	0.898	UTR_3_PRIME CtBP DOWNSTREAM CtBP INTRON CtBP
2R	14829525	2R_14829525_SNP [dm3] 2R_18942020_SNP [dm6]	C	T	3.900e^-4	0.898	INTRON sano
2R	5419461	2R_5419461_SNP [dm3] 2R_9531956_SNP [dm6]	G	C	3.913e^-4	0.898	INTRON brp
3L	8605223	3L_8605223_SNP [dm3] 3L_8612123_SNP [dm6]	A	G	3.918e^-4	0.898	INTRON CG6282
2R	20605478	2R_20605478_SNP [dm3] 2R_24717955_SNP [dm6]	A	T	3.919e^-4	0.898	INTRON Mid1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19470520	X_19470520_SNP [dm3] X_19576487_SNP [dm6]	T	G	3.922e^-4	0.898	INTRON Tao
2L	8322159	2L_8322159_SNP [dm3] 2L_8322159_SNP [dm6]	A	G	3.922e^-4	0.898	UTR_3_PRIME CG7781 DOWNSTREAM CG7787
2R	11594824	2R_11594824_SNP [dm3] 2R_15707319_SNP [dm6]	C	T	3.928e^-4	0.898	INTERGENIC
2L	11479918	2L_11479918_SNP [dm3] 2L_11479918_SNP [dm6]	A	G	3.933e^-4	0.898	INTERGENIC
3L	727460	3L_727460_SNP [dm3] 3L_727460_SNP [dm6]	A	C	3.939e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_sens
2L	8286101	2L_8286101_SNP [dm3] 2L_8286101_SNP [dm6]	G	C	3.945e^-4	0.898	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	7155960	2L_7155960_SNP [dm3] 2L_7155960_SNP [dm6]	T	G	3.946e^-4	0.898	NON_SYNONYMOUS_CODING Pvf3	TF binding site mE1_TFBS_sens
2R	14083109	2R_14083109_SNP [dm3] 2R_18195604_SNP [dm6]	A	T	3.950e^-4	0.898	INTERGENIC
3R	17955634	3R_17955634_SNP [dm3] 3R_22129912_SNP [dm6]	A	G	3.971e^-4	0.898	NON_SYNONYMOUS_CODING CG42390
2R	19737806	2R_19737806_SNP [dm3] 2R_23850283_SNP [dm6]	G	C	3.973e^-4	0.898	UTR_5_PRIME eIF6 INTRON ytr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	11627829	3L_11627829_SNP [dm3] 3L_11634729_SNP [dm6]	A	C	3.978e^-4	0.898	UTR_5_PRIME CG32091
2L	4627891	2L_4627891_SNP [dm3] 2L_4627891_SNP [dm6]	A	G	3.978e^-4	0.898	INTERGENIC
X	8433214	X_8433214_DEL [dm3] X_8539181_DEL [dm6]	CA	C	3.981e^-4	0.898	INTRON Nrg
3L	21767643	3L_21767643_SNP [dm3] 3L_21774543_SNP [dm6]	C	G	3.985e^-4	0.898	UPSTREAM CG42552 INTRON CG42689
3R	9707096	3R_9707096_SNP [dm3] 3R_13881374_SNP [dm6]	G	T	3.990e^-4	0.898	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	12469308	3R_12469308_SNP [dm3] 3R_16643586_SNP [dm6]	A	C	3.993e^-4	0.898	UPSTREAM CG10326 DOWNSTREAM nonA-l INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	9497043	X_9497043_SNP [dm3] X_9603010_SNP [dm6]	G	A	4.016e^-4	0.898	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9017026	X_9017026_DEL [dm3] X_9122993_DEL [dm6]	AA	A	4.018e^-4	0.898	UTR_3_PRIME fend DOWNSTREAM fend
3R	9839950	3R_9839950_SNP [dm3] 3R_14014228_SNP [dm6]	A	G	4.030e^-4	0.898	INTRON rdx	TF binding site BDTNP1_TFBS_dl
2R	15144423	2R_15144423_SNP [dm3] 2R_19256918_SNP [dm6]	A	T	4.032e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2L	8334214	2L_8334214_SNP [dm3] 2L_8334214_SNP [dm6]	G	A	4.044e^-4	0.898	INTERGENIC
2R	12887593	2R_12887593_SNP [dm3] 2R_17000088_SNP [dm6]	A	G	4.045e^-4	0.898	SYNONYMOUS_CODING ste24b DOWNSTREAM ste24a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	843597	2L_843597_SNP [dm3] 2L_843597_SNP [dm6]	A	C	4.051e^-4	0.898	UPSTREAM drongo INTRON drongo
2L	19845647	2L_19845647_SNP [dm3] 2L_19845647_SNP [dm6]	A	G	4.054e^-4	0.898	INTRON sick
2R	19970951	2R_19970951_SNP [dm3] 2R_24083428_SNP [dm6]	A	G	4.056e^-4	0.898	INTRON CG16786
X	15288590	X_15288590_SNP [dm3] X_15394557_SNP [dm6]	G	A	4.057e^-4	0.898	INTRON Cngl
3L	8588621	3L_8588621_SNP [dm3] 3L_8595521_SNP [dm6]	C	T	4.058e^-4	0.898	INTRON CG43078	TF binding site mE1_TFBS_chinmo
2R	13001336	2R_13001336_SNP [dm3] 2R_17113831_SNP [dm6]	G	C	4.059e^-4	0.898	NON_SYNONYMOUS_CODING CG15611	TF binding site mE1_TFBS_cad
3R	12461763	3R_12461763_SNP [dm3] 3R_16636041_SNP [dm6]	T	G	4.064e^-4	0.898	SYNONYMOUS_CODING Fas1
3L	12887736	3L_12887736_SNP [dm3] 3L_12894636_SNP [dm6]	C	T	4.065e^-4	0.898	UTR_3_PRIME CG14118	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	16493401	3L_16493401_SNP [dm3] 3L_16500301_SNP [dm6]	C	T	4.065e^-4	0.898	SYNONYMOUS_CODING st INTRON CG43373
3R	8562895	3R_8562895_SNP [dm3] 3R_12737173_SNP [dm6]	C	G	4.068e^-4	0.898	INTERGENIC
3R	9956702	3R_9956702_SNP [dm3] 3R_14130980_SNP [dm6]	A	G	4.073e^-4	0.898	SYNONYMOUS_CODING CG14356 DOWNSTREAM RpII140	TF binding site mE1_TFBS_cad
3R	7900843	3R_7900843_SNP [dm3] 3R_12075121_SNP [dm6]	A	T	4.077e^-4	0.898	INTRON CG14741	TF binding site mE1_TFBS_cad
X	14236590	X_14236590_SNP [dm3] X_14342557_SNP [dm6]	A	C	4.078e^-4	0.898	INTRON dpr8
3R	15155465	3R_15155465_SNP [dm3] 3R_19329743_SNP [dm6]	G	T	4.079e^-4	0.898	EXON CR43258	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1219335	3L_1219335_SNP [dm3] 3L_1219335_SNP [dm6]	G	A	4.087e^-4	0.898	UPSTREAM LysP INTRON mwh
3L	716334	3L_716334_SNP [dm3] 3L_716334_SNP [dm6]	A	T	4.098e^-4	0.898	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	8861448	3R_8861448_SNP [dm3] 3R_13035726_SNP [dm6]	T	C	4.100e^-4	0.898	SYNONYMOUS_CODING ry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19756053	2L_19756053_SNP [dm3] 2L_19756053_SNP [dm6]	C	T	4.107e^-4	0.898	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_HSA
X	18836456	X_18836456_SNP [dm3] X_18942423_SNP [dm6]	G	A	4.122e^-4	0.898	INTRON CG43759
2L	14768708	2L_14768708_SNP [dm3] 2L_14768708_SNP [dm6]	A	T	4.124e^-4	0.898	INTERGENIC
2L	18030196	2L_18030196_SNP [dm3] 2L_18030196_SNP [dm6]	A	G	4.144e^-4	0.898	INTRON rdo
2L	2573348	2L_2573348_SNP [dm3] 2L_2573348_SNP [dm6]	T	C	4.151e^-4	0.898	UPSTREAM Cyp309a2 DOWNSTREAM Rad1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14184135	3L_14184135_SNP [dm3] 3L_14191035_SNP [dm6]	T	C	4.151e^-4	0.898	UTR_5_PRIME nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	11726273	3L_11726273_SNP [dm3] 3L_11733173_SNP [dm6]	C	G	4.154e^-4	0.898	NON_SYNONYMOUS_CODING CG32087 DOWNSTREAM CG6024	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15779368	3L_15779368_SNP [dm3] 3L_15786268_SNP [dm6]	A	C	4.159e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8331364	2L_8331364_SNP [dm3] 2L_8331364_SNP [dm6]	C	G	4.160e^-4	0.898	INTRON CG14275
3L	18611671	3L_18611671_SNP [dm3] 3L_18618571_SNP [dm6]	C	A	4.160e^-4	0.898	UTR_3_PRIME not UPSTREAM CG13380 & 1 other DOWNSTREAM not & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8939952	3R_8939952_SNP [dm3] 3R_13114230_SNP [dm6]	C	T	4.168e^-4	0.898	SYNONYMOUS_CODING timeout
3R	22112089	3R_22112089_SNP [dm3] 3R_26286367_SNP [dm6]	G	T	4.178e^-4	0.898	INTERGENIC
3R	10044955	3R_10044955_SNP [dm3] 3R_14219233_SNP [dm6]	C	A	4.187e^-4	0.898	NON_SYNONYMOUS_CODING CG31326
2R	12769591	2R_12769591_DEL [dm3] 2R_16882086_DEL [dm6]	AGGAA	A	4.189e^-4	0.898	INTRON CG8910 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10447821	2L_10447821_SNP [dm3] 2L_10447821_SNP [dm6]	A	G	4.194e^-4	0.898	NON_SYNONYMOUS_CODING loh
2R	18714077	2R_18714077_SNP [dm3] 2R_22826554_SNP [dm6]	G	C	4.204e^-4	0.898	SYNONYMOUS_CODING CG30274 INTRON CG42284
2R	19123694	2R_19123694_SNP [dm3] 2R_23236171_SNP [dm6]	T	A	4.204e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9820645	2R_9820645_SNP [dm3] 2R_13933140_SNP [dm6]	A	C	4.210e^-4	0.898	INTRON shot	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	14519168	X_14519168_SNP [dm3] X_14625135_SNP [dm6]	C	T	4.211e^-4	0.898	INTRON NetA
3R	8794906	3R_8794906_SNP [dm3] 3R_12969184_SNP [dm6]	G	A	4.214e^-4	0.898	INTRON CG7381	TF binding site mE1_TFBS_cad
3L	16231046	3L_16231046_SNP [dm3] 3L_16237946_SNP [dm6]	A	C	4.218e^-4	0.898	DOWNSTREAM l_3_72Dp INTRON l_3_72Dr
3R	25417420	3R_25417420_SNP [dm3] 3R_29591698_SNP [dm6]	C	G	4.220e^-4	0.898	UPSTREAM alph & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	8234742	2L_8234742_SNP [dm3] 2L_8234742_SNP [dm6]	A	G	4.226e^-4	0.898	INTRON Pvr
2L	1952064	2L_1952064_SNP [dm3] 2L_1952064_SNP [dm6]	T	C	4.227e^-4	0.898	SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3789383	X_3789383_DEL [dm3] X_3895350_DEL [dm6]	GTCCG	G	4.227e^-4	0.898	UTR_3_PRIME CG42541
3L	12206111	3L_12206111_SNP [dm3] 3L_12213011_SNP [dm6]	A	T	4.228e^-4	0.898	UTR_3_PRIME app INTRON app
2R	17505256	2R_17505256_SNP [dm3] 2R_21617751_SNP [dm6]	T	C	4.228e^-4	0.898	SYNONYMOUS_CODING clt UPSTREAM CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	9727662	3L_9727662_SNP [dm3] 3L_9734562_SNP [dm6]	G	T	4.242e^-4	0.898	UTR_3_PRIME CG42268 UPSTREAM mir-4986 & 1 other
3L	6395626	3L_6395626_SNP [dm3] 3L_6402526_SNP [dm6]	A	T	4.251e^-4	0.898	INTRON CG42747
3R	25098928	3R_25098928_INS [dm3] 3R_29273206_INS [dm6]	A	AGGTAAATAGTA...	4.257e^-4	0.898	INTERGENIC	regulatory region REDfly_CRMs
3L	12574549	3L_12574549_SNP [dm3] 3L_12581449_SNP [dm6]	T	C	4.263e^-4	0.898	INTRON ara
2R	10856906	2R_10856906_SNP [dm3] 2R_14969401_SNP [dm6]	C	T	4.264e^-4	0.898	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11437955	3R_11437955_SNP [dm3] 3R_15612233_SNP [dm6]	A	G	4.267e^-4	0.898	INTERGENIC
3L	9974625	3L_9974625_DEL [dm3] 3L_9981525_DEL [dm6]	CGA	C	4.268e^-4	0.898	INTRON dpr6
X	18721075	X_18721075_SNP [dm3] X_18827042_SNP [dm6]	A	T	4.270e^-4	0.898	UTR_3_PRIME CG42450 DOWNSTREAM CG42450
3R	18597976	3R_18597976_SNP [dm3] 3R_22772254_SNP [dm6]	A	T	4.274e^-4	0.898	UPSTREAM CG43095 INTRON Usp12-46 & 1 other
3L	4806053	3L_4806053_SNP [dm3] 3L_4806053_SNP [dm6]	G	T	4.279e^-4	0.898	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16881602	3L_16881602_INS [dm3] 3L_16888502_INS [dm6]	T	TT	4.294e^-4	0.898	INTRON Lmpt
3L	17333724	3L_17333724_SNP [dm3] 3L_17340624_SNP [dm6]	A	G	4.295e^-4	0.898	SYNONYMOUS_CODING CG13727 UPSTREAM tRNA:CR32173	TF binding site mE1_TFBS_cad
2R	7423305	2R_7423305_SNP [dm3] 2R_11535800_SNP [dm6]	T	C	4.301e^-4	0.898	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	19705332	3R_19705332_INS [dm3] 3R_23879610_INS [dm6]	T	TATTATT	4.302e^-4	0.898	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	2394998	X_2394998_SNP [dm3] X_2500965_SNP [dm6]	A	G	4.304e^-4	0.898	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8154298	3R_8154298_SNP [dm3] 3R_12328576_SNP [dm6]	G	T	4.305e^-4	0.898	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
2R	16284945	2R_16284945_SNP [dm3] 2R_20397440_SNP [dm6]	A	G	4.313e^-4	0.898	INTERGENIC
3R	7047787	3R_7047787_SNP [dm3] 3R_11222065_SNP [dm6]	A	G	4.322e^-4	0.898	UPSTREAM snoRNA:Me18S-C1096 & 2 others DOWNSTREAM CR31144 INTRON RpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	6426971	3L_6426971_DEL [dm3] 3L_6433871_DEL [dm6]	AAC	A	4.322e^-4	0.898	INTRON CG42747
2L	3395883	2L_3395883_SNP [dm3] 2L_3395883_SNP [dm6]	T	C	4.326e^-4	0.898	INTERGENIC
2L	3192980	2L_3192980_SNP [dm3] 2L_3192980_SNP [dm6]	G	A	4.327e^-4	0.898	UTR_5_PRIME CG34393	TF binding site mE1_TFBS_chinmo
3L	14003707	3L_14003707_SNP [dm3] 3L_14010607_SNP [dm6]	A	G	4.349e^-4	0.898	INTRON upSET	TF binding site mE1_TFBS_cad
3R	27094554	3R_27094554_SNP [dm3] 3R_31268832_SNP [dm6]	A	T	4.357e^-4	0.898	DOWNSTREAM ppk24 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5429291	3R_5429291_SNP [dm3] 3R_9603569_SNP [dm6]	A	T	4.360e^-4	0.898	INTRON CG8312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_sens
3R	23450660	3R_23450660_SNP [dm3] 3R_27624938_SNP [dm6]	T	C	4.367e^-4	0.898	INTRON Tusp & 1 other
2L	16572247	2L_16572247_SNP [dm3] 2L_16572247_SNP [dm6]	C	A	4.369e^-4	0.898	INTRON CG42389
3R	15007725	3R_15007725_SNP [dm3] 3R_19182003_SNP [dm6]	C	T	4.376e^-4	0.898	INTRON CG31475
2R	17109729	2R_17109729_SNP [dm3] 2R_21222224_SNP [dm6]	A	G	4.377e^-4	0.898	INTRON ASPP	TF binding site mE1_TFBS_cad
2R	9008735	2R_9008735_SNP [dm3] 2R_13121230_SNP [dm6]	G	A	4.381e^-4	0.898	INTRON CG13325
2L	6012142	2L_6012142_SNP [dm3] 2L_6012142_SNP [dm6]	T	A	4.383e^-4	0.898	UPSTREAM CG9098 DOWNSTREAM H2.0 INTRON CG9098
3R	25809962	3R_25809962_SNP [dm3] 3R_29984240_SNP [dm6]	G	A	4.385e^-4	0.898	INTRON CG7896
3R	24131267	3R_24131267_SNP [dm3] 3R_28305545_SNP [dm6]	T	A	4.388e^-4	0.898	UPSTREAM CG12516 INTERGENIC
3R	10342578	3R_10342578_DEL [dm3] 3R_14516856_DEL [dm6]	ATGACGTCACCGTA...	A	4.390e^-4	0.898	UPSTREAM CG34273 INTRON Pde6
2R	7512851	2R_7512851_SNP [dm3] 2R_11625346_SNP [dm6]	C	A	4.391e^-4	0.898	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15596462	2L_15596462_SNP [dm3] 2L_15596462_SNP [dm6]	C	A	4.398e^-4	0.898	INTERGENIC
2R	11302202	2R_11302202_SNP [dm3] 2R_15414697_SNP [dm6]	G	C	4.398e^-4	0.898	INTRON CG43729
X	10888225	X_10888225_SNP [dm3] X_10994192_SNP [dm6]	T	A	4.414e^-4	0.898	INTRON CG42339
2R	12544634	2R_12544634_SNP [dm3] 2R_16657129_SNP [dm6]	G	A	4.417e^-4	0.898	SYNONYMOUS_CODING Picot
X	19474465	X_19474465_SNP [dm3] X_19580432_SNP [dm6]	T	G	4.423e^-4	0.898	UTR_3_PRIME CG14218 UPSTREAM Tao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9146123	2L_9146123_SNP [dm3] 2L_9146123_SNP [dm6]	T	G	4.423e^-4	0.898	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7423409	2R_7423409_SNP [dm3] 2R_11535904_SNP [dm6]	A	G	4.434e^-4	0.898	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17212027	2L_17212027_SNP [dm3] 2L_17212027_SNP [dm6]	T	C	4.440e^-4	0.898	INTRON beat-IIIc
2R	17374504	2R_17374504_SNP [dm3] 2R_21486999_SNP [dm6]	C	A	4.448e^-4	0.898	UTR_3_PRIME Sara DOWNSTREAM Fkbp14
3R	21946044	3R_21946044_SNP [dm3] 3R_26120322_SNP [dm6]	A	T	4.450e^-4	0.898	INTRON CG31324
2L	3229354	2L_3229354_SNP [dm3] 2L_3229354_SNP [dm6]	G	A	4.451e^-4	0.898	INTERGENIC
2R	16294511	2R_16294511_SNP [dm3] 2R_20407006_SNP [dm6]	A	T	4.456e^-4	0.898	INTERGENIC
3R	8499646	3R_8499646_SNP [dm3] 3R_12673924_SNP [dm6]	A	G	4.458e^-4	0.898	UTR_3_PRIME CG14395 UPSTREAM CG6188
X	15431207	X_15431207_SNP [dm3] X_15537174_SNP [dm6]	G	T	4.460e^-4	0.898	INTRON Ac13E
X	10544398	X_10544398_SNP [dm3] X_10650365_SNP [dm6]	A	T	4.463e^-4	0.898	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
3L	4806057	3L_4806057_SNP [dm3] 3L_4806057_SNP [dm6]	T	C	4.465e^-4	0.898	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4806059	3L_4806059_SNP [dm3] 3L_4806059_SNP [dm6]	A	G	4.465e^-4	0.898	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	19471842	X_19471842_SNP [dm3] X_19577809_SNP [dm6]	T	C	4.466e^-4	0.898	INTRON Tao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	14629666	2R_14629666_SNP [dm3] 2R_18742161_SNP [dm6]	C	A	4.470e^-4	0.898	UPSTREAM CR30121 DOWNSTREAM CG18609 INTRON Hs3st-A
2R	16124680	2R_16124680_SNP [dm3] 2R_20237175_SNP [dm6]	C	T	4.484e^-4	0.898	SYNONYMOUS_CODING CG11099
3L	1687534	3L_1687534_SNP [dm3] 3L_1687534_SNP [dm6]	A	G	4.488e^-4	0.898	INTRON CG7991
2L	13411652	2L_13411652_SNP [dm3] 2L_13411652_SNP [dm6]	C	A	4.495e^-4	0.898	UPSTREAM CG16848 & 1 other DOWNSTREAM CG7110 INTERGENIC
3L	11296174	3L_11296174_SNP [dm3] 3L_11303074_SNP [dm6]	T	C	4.498e^-4	0.898	INTERGENIC
2L	14570638	2L_14570638_SNP [dm3] 2L_14570638_SNP [dm6]	G	C	4.500e^-4	0.898	INTERGENIC
3L	13823082	3L_13823082_SNP [dm3] 3L_13829982_SNP [dm6]	C	A	4.503e^-4	0.898	INTERGENIC
2L	3227965	2L_3227965_SNP [dm3] 2L_3227965_SNP [dm6]	T	A	4.506e^-4	0.898	INTERGENIC
2L	9947225	2L_9947225_SNP [dm3] 2L_9947225_SNP [dm6]	A	T	4.511e^-4	0.898	INTRON CG5853
3L	4175359	3L_4175359_DEL [dm3] 3L_4175359_DEL [dm6]	TGTATCCTTCT...	T	4.521e^-4	0.898	UTR_3_PRIME Teh4 INTRON CG18675
3L	20307344	3L_20307344_SNP [dm3] 3L_20314244_SNP [dm6]	A	T	4.535e^-4	0.898	DOWNSTREAM polo & 1 other INTRON alphaSnap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	6124942	2L_6124942_SNP [dm3] 2L_6124942_SNP [dm6]	A	T	4.540e^-4	0.898	UPSTREAM Arpc4 DOWNSTREAM stai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	13146519	3R_13146519_SNP [dm3] 3R_17320797_SNP [dm6]	G	C	4.541e^-4	0.898	NON_SYNONYMOUS_CODING beat-IIa
3R	9963646	3R_9963646_SNP [dm3] 3R_14137924_SNP [dm6]	C	T	4.544e^-4	0.898	INTERGENIC
X	14239594	X_14239594_INS [dm3] X_14345561_INS [dm6]	A	AG	4.552e^-4	0.898	INTRON dpr8
X	16138735	X_16138735_SNP [dm3] X_16244702_SNP [dm6]	T	C	4.553e^-4	0.898	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9217554	2R_9217554_SNP [dm3] 2R_13330049_SNP [dm6]	G	A	4.553e^-4	0.898	UPSTREAM mir-184 EXON CR44206	TF binding site mE1_TFBS_cad
2R	14321185	2R_14321185_SNP [dm3] 2R_18433680_SNP [dm6]	G	A	4.556e^-4	0.898	INTRON CG30118
2L	19725730	2L_19725730_SNP [dm3] 2L_19725730_SNP [dm6]	C	T	4.560e^-4	0.898	INTRON Lar
2L	13221361	2L_13221361_SNP [dm3] 2L_13221361_SNP [dm6]	C	T	4.565e^-4	0.898	UTR_3_PRIME CG5705 DOWNSTREAM Ski6	TF binding site BDTNP1_TFBS_Med
3R	23523389	3R_23523389_SNP [dm3] 3R_27697667_SNP [dm6]	G	A	4.584e^-4	0.898	SYNONYMOUS_CODING ALiX	TF binding site mE1_TFBS_chinmo
X	6708325	X_6708325_DEL [dm3] X_6814292_DEL [dm6]	ATTAGTTTTA	A	4.585e^-4	0.898	DOWNSTREAM pod1 INTRON iav
2R	9729383	2R_9729383_SNP [dm3] 2R_13841878_SNP [dm6]	T	A	4.587e^-4	0.898	UTR_3_PRIME Syngr DOWNSTREAM CG6357
2L	11742924	2L_11742924_SNP [dm3] 2L_11742924_SNP [dm6]	C	T	4.589e^-4	0.898	SYNONYMOUS_CODING Vha100-5 DOWNSTREAM CR44144	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8560948	3R_8560948_SNP [dm3] 3R_12735226_SNP [dm6]	A	T	4.592e^-4	0.898	INTERGENIC
2R	17660219	2R_17660219_SNP [dm3] 2R_21772714_SNP [dm6]	C	T	4.595e^-4	0.898	UPSTREAM CG4021 INTERGENIC
3L	6430399	3L_6430399_SNP [dm3] 3L_6437299_SNP [dm6]	T	C	4.597e^-4	0.898	INTRON CG42747
2R	18591365	2R_18591365_SNP [dm3] 2R_22703860_SNP [dm6]	T	G	4.601e^-4	0.898	UPSTREAM Obp58b DOWNSTREAM Obp59a INTRON CG30259
3L	5713614	3L_5713614_SNP [dm3] 3L_5720514_SNP [dm6]	C	T	4.601e^-4	0.898	DOWNSTREAM snoRNA:Me18S-A1494 INTRON sif
2R	14667065	2R_14667065_SNP [dm3] 2R_18779560_SNP [dm6]	G	T	4.606e^-4	0.898	INTERGENIC
2R	17504947	2R_17504947_SNP [dm3] 2R_21617442_SNP [dm6]	T	C	4.611e^-4	0.898	SYNONYMOUS_CODING clt UPSTREAM CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	17213854	2L_17213854_SNP [dm3] 2L_17213854_SNP [dm6]	C	G	4.613e^-4	0.898	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10171275	2L_10171275_SNP [dm3] 2L_10171275_SNP [dm6]	C	T	4.616e^-4	0.898	INTRON CG44153
3R	20936787	3R_20936787_SNP [dm3] 3R_25111065_SNP [dm6]	C	A	4.622e^-4	0.898	SPLICE_SITE_REGION CG13650 INTRON CG13650
2R	19991359	2R_19991359_SNP [dm3] 2R_24103836_SNP [dm6]	G	T	4.625e^-4	0.898	SYNONYMOUS_CODING enok
2R	4114645	2R_4114645_SNP [dm3] 2R_8227140_SNP [dm6]	T	A	4.639e^-4	0.899	DOWNSTREAM LRP1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10135989	X_10135989_SNP [dm3] X_10241956_SNP [dm6]	A	G	4.639e^-4	0.899	INTRON Hk
3R	8079284	3R_8079284_SNP [dm3] 3R_12253562_SNP [dm6]	T	C	4.649e^-4	0.9	UPSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	11024955	2R_11024955_SNP [dm3] 2R_15137450_SNP [dm6]	C	T	4.655e^-4	0.9	INTRON chn	TF binding site mE1_TFBS_inv
3L	13219368	3L_13219368_SNP [dm3] 3L_13226268_SNP [dm6]	A	G	4.657e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
2R	18364602	2R_18364602_SNP [dm3] 2R_22477097_SNP [dm6]	C	T	4.681e^-4	0.902	SYNONYMOUS_CODING CG45063 UPSTREAM CG45062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3163955	X_3163955_SNP [dm3] X_3269922_SNP [dm6]	A	C	4.693e^-4	0.902	INTRON dnc
X	19476979	X_19476979_SNP [dm3] X_19582946_SNP [dm6]	T	G	4.694e^-4	0.902	UPSTREAM CG14218 & 1 other INTERGENIC
3L	24252419	3L_24252419_SNP [dm3] 3L_24259319_SNP [dm6]	C	T	4.697e^-4	0.902	INTRON Snap25
2L	11182241	2L_11182241_SNP [dm3] 2L_11182241_SNP [dm6]	C	A	4.697e^-4	0.902	INTRON Ca-beta	TF binding site mE1_TFBS_cad
2L	8627749	2L_8627749_SNP [dm3] 2L_8627749_SNP [dm6]	G	A	4.713e^-4	0.902	INTRON Sema-1a
3R	8453654	3R_8453654_SNP [dm3] 3R_12627932_SNP [dm6]	A	C	4.714e^-4	0.902	UPSTREAM Snx3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	9974632	2R_9974632_SNP [dm3] 2R_14087127_SNP [dm6]	C	A	4.717e^-4	0.902	INTRON Prosap
2L	5254394	2L_5254394_SNP [dm3] 2L_5254394_SNP [dm6]	T	C	4.731e^-4	0.902	INTRON tkv	TF binding site mE1_TFBS_chinmo
2L	12458321	2L_12458321_DEL [dm3] 2L_12458321_DEL [dm6]	GTAAATTTAGCACTGCAATT...	CCATTGCAATCCAGACTAAC...	4.735e^-4	0.902	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14809261	2R_14809261_SNP [dm3] 2R_18921756_SNP [dm6]	G	A	4.735e^-4	0.902	INTRON sano
3L	6435705	3L_6435705_SNP [dm3] 3L_6442605_SNP [dm6]	G	A	4.737e^-4	0.902	INTRON CG42747	TF binding site mE1_TFBS_cad
2L	2264696	2L_2264696_SNP [dm3] 2L_2264696_SNP [dm6]	A	T	4.740e^-4	0.902	NON_SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
2R	7776228	2R_7776228_SNP [dm3] 2R_11888723_SNP [dm6]	A	T	4.743e^-4	0.902	INTRON ERp60
3L	2362944	3L_2362944_DEL [dm3] 3L_2362944_DEL [dm6]	TGCTATGCAGCCAT...	T	4.743e^-4	0.902	DOWNSTREAM CG13801 INTERGENIC
2L	10932945	2L_10932945_SNP [dm3] 2L_10932945_SNP [dm6]	G	A	4.744e^-4	0.902	INTRON dpr2
X	21301027	X_21301027_SNP [dm3] X_21430000_SNP [dm6]	T	C	4.750e^-4	0.902	UPSTREAM CG10918 INTRON CG42343
2R	14828748	2R_14828748_SNP [dm3] 2R_18941243_SNP [dm6]	C	T	4.758e^-4	0.902	INTRON sano
2L	15596435	2L_15596435_SNP [dm3] 2L_15596435_SNP [dm6]	G	C	4.765e^-4	0.903	INTERGENIC
2L	10573220	2L_10573220_SNP [dm3] 2L_10573220_SNP [dm6]	T	C	4.771e^-4	0.903	INTRON Trim9
X	2810217	X_2810217_INS [dm3] X_2916184_INS [dm6]	T	TA	4.795e^-4	0.903	INTRON kirre
3L	13613555	3L_13613555_SNP [dm3] 3L_13620455_SNP [dm6]	C	T	4.796e^-4	0.903	UPSTREAM mir-289 INTRON bru-3
3R	8566701	3R_8566701_SNP [dm3] 3R_12740979_SNP [dm6]	C	T	4.797e^-4	0.903	SYNONYMOUS_CODING CG5724 DOWNSTREAM CG5999
2L	19756071	2L_19756071_SNP [dm3] 2L_19756071_SNP [dm6]	T	C	4.798e^-4	0.903	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_HSA
3R	19077529	3R_19077529_SNP [dm3] 3R_23251807_SNP [dm6]	G	A	4.809e^-4	0.903	UTR_5_PRIME EloA UPSTREAM CG4449 INTRON EloA	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	3377813	2L_3377813_SNP [dm3] 2L_3377813_SNP [dm6]	A	T	4.811e^-4	0.903	SPLICE_SITE_REGION Ptpa INTRON Ptpa	TF binding site mE1_TFBS_sens
2R	13533730	2R_13533730_SNP [dm3] 2R_17646225_SNP [dm6]	A	T	4.812e^-4	0.903	DOWNSTREAM CCHa1-R INTERGENIC
X	10276883	X_10276883_SNP [dm3] X_10382850_SNP [dm6]	C	A	4.816e^-4	0.903	UTR_3_PRIME CG17841 DOWNSTREAM Psf3
2L	3396440	2L_3396440_SNP [dm3] 2L_3396440_SNP [dm6]	G	A	4.821e^-4	0.903	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.342e^-20)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	3.222e-08

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1661 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	18608372	2R_18608372_SNP [dm3] 2R_22720867_SNP [dm6]	G	A	1.390e^-7	0.261	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	18608261	2R_18608261_SNP [dm3] 2R_22720756_SNP [dm6]	G	C	4.136e^-7	0.388	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	619506	3L_619506_SNP [dm3] 3L_619506_SNP [dm6]	G	A	9.441e^-7	0.51	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
3L	12561460	3L_12561460_SNP [dm3] 3L_12568360_SNP [dm6]	C	A	1.180e^-6	0.51	INTRON sowah
2R	18608381	2R_18608381_SNP [dm3] 2R_22720876_SNP [dm6]	T	C	1.361e^-6	0.51	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14629572	2R_14629572_SNP [dm3] 2R_18742067_SNP [dm6]	T	G	2.173e^-6	0.545	UPSTREAM CR30121 DOWNSTREAM CG18609 INTRON Hs3st-A
2R	18614987	2R_18614987_SNP [dm3] 2R_22727482_SNP [dm6]	G	A	2.389e^-6	0.545	INTRON jbug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	17916325	3R_17916325_SNP [dm3] 3R_22090603_SNP [dm6]	G	T	3.127e^-6	0.545	INTRON CG5778
2R	18605375	2R_18605375_SNP [dm3] 2R_22717870_SNP [dm6]	T	C	3.422e^-6	0.545	SPLICE_SITE_REGION jbug DOWNSTREAM CG30268 INTRON jbug	TF binding site mE1_TFBS_chinmo
2R	18608063	2R_18608063_SNP [dm3] 2R_22720558_SNP [dm6]	C	G	3.454e^-6	0.545	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6395533	3L_6395533_SNP [dm3] 3L_6402433_SNP [dm6]	G	A	3.496e^-6	0.545	INTRON CG42747
2R	18608057	2R_18608057_SNP [dm3] 2R_22720552_SNP [dm6]	G	A	3.860e^-6	0.545	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16287733	2R_16287733_DEL [dm3] 2R_20400228_DEL [dm6]	GA	G	4.210e^-6	0.545	INTERGENIC
2R	18604756	2R_18604756_SNP [dm3] 2R_22717251_SNP [dm6]	G	C	4.210e^-6	0.545	DOWNSTREAM jbug & 1 other INTERGENIC
3L	6974989	3L_6974989_INS [dm3] 3L_6981889_INS [dm6]	A	ATA	4.370e^-6	0.545	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18611717	2R_18611717_SNP [dm3] 2R_22724212_SNP [dm6]	G	A	4.653e^-6	0.545	INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	16287739	2R_16287739_SNP [dm3] 2R_20400234_SNP [dm6]	G	C	5.459e^-6	0.602	INTERGENIC
2R	18604788	2R_18604788_SNP [dm3] 2R_22717283_SNP [dm6]	C	T	6.074e^-6	0.633	DOWNSTREAM jbug & 1 other INTERGENIC
2R	14829525	2R_14829525_SNP [dm3] 2R_18942020_SNP [dm6]	C	T	9.484e^-6	0.91	INTRON sano
2R	18611667	2R_18611667_SNP [dm3] 2R_22724162_SNP [dm6]	A	C	9.698e^-6	0.91	SPLICE_SITE_REGION jbug INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	7648677	X_7648677_INS [dm3] X_7754644_INS [dm6]	T	TT	1.145e^-5	0.966	INTERGENIC
3L	7599835	3L_7599835_SNP [dm3] 3L_7606735_SNP [dm6]	G	T	1.159e^-5	0.966	INTRON CG33275
2R	18610996	2R_18610996_SNP [dm3] 2R_22723491_SNP [dm6]	T	C	1.185e^-5	0.966	INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	18614986	2R_18614986_SNP [dm3] 2R_22727481_SNP [dm6]	A	C	1.274e^-5	0.966	INTRON jbug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7262550	2R_7262550_SNP [dm3] 2R_11375045_SNP [dm6]	G	A	1.288e^-5	0.966	UPSTREAM CG13203 INTRON CG13203	TF binding site mE1_TFBS_chinmo
3L	6396334	3L_6396334_SNP [dm3] 3L_6403234_SNP [dm6]	G	C	1.581e^-5	1	INTRON CG42747
2R	14828785	2R_14828785_SNP [dm3] 2R_18941280_SNP [dm6]	T	C	1.644e^-5	1	INTRON sano
2R	18610848	2R_18610848_SNP [dm3] 2R_22723343_SNP [dm6]	T	A	1.678e^-5	1	INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	9544444	2R_9544444_SNP [dm3] 2R_13656939_SNP [dm6]	T	A	1.919e^-5	1	INTRON fas
3L	6396124	3L_6396124_SNP [dm3] 3L_6403024_SNP [dm6]	A	G	1.950e^-5	1	INTRON CG42747
3L	6975642	3L_6975642_SNP [dm3] 3L_6982542_SNP [dm6]	A	G	1.978e^-5	1	DOWNSTREAM CG32388 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5272359	2R_5272359_SNP [dm3] 2R_9384854_SNP [dm6]	C	T	2.075e^-5	1	INTRON CG13954
2R	12870324	2R_12870324_SNP [dm3] 2R_16982819_SNP [dm6]	A	G	2.096e^-5	1	INTRON Cbp53E
X	12379812	X_12379812_SNP [dm3] X_12485779_SNP [dm6]	C	G	2.118e^-5	1	INTERGENIC
3R	19254592	3R_19254592_INS [dm3] 3R_23428870_INS [dm6]	A	ACGGCACGGGCA...	2.366e^-5	1	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
2R	18606286	2R_18606286_SNP [dm3] 2R_22718781_SNP [dm6]	C	T	2.381e^-5	1	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7533565	2R_7533565_SNP [dm3] 2R_11646060_SNP [dm6]	C	T	2.418e^-5	1	NON_SYNONYMOUS_CODING CG9003 UPSTREAM CG9003 INTRON CG9003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9817543	2L_9817543_SNP [dm3] 2L_9817543_SNP [dm6]	C	T	2.446e^-5	1	INTRON nAChRalpha6
3R	19254583	3R_19254583_SNP [dm3] 3R_23428861_SNP [dm6]	T	G	2.472e^-5	1	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
2R	18614338	2R_18614338_SNP [dm3] 2R_22726833_SNP [dm6]	C	T	2.521e^-5	1	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	15014646	2L_15014646_SNP [dm3] 2L_15014646_SNP [dm6]	A	G	2.542e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15014658	2L_15014658_SNP [dm3] 2L_15014658_SNP [dm6]	T	C	2.577e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18612010	2R_18612010_SNP [dm3] 2R_22724505_SNP [dm6]	A	G	2.596e^-5	1	INTRON jbug	TF binding site BDTNP1_TFBS_sna mE1_TFBS_inv
3L	13229673	3L_13229673_SNP [dm3] 3L_13236573_SNP [dm6]	T	C	2.646e^-5	1	INTRON caps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21683721	3R_21683721_SNP [dm3] 3R_25857999_SNP [dm6]	T	C	2.833e^-5	1	INTRON CG5890
3L	10256151	3L_10256151_SNP [dm3] 3L_10263051_SNP [dm6]	T	A	2.844e^-5	1	DOWNSTREAM can INTERGENIC
3L	1431658	3L_1431658_SNP [dm3] 3L_1431658_SNP [dm6]	T	A	2.914e^-5	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16580053	2R_16580053_SNP [dm3] 2R_20692548_SNP [dm6]	T	G	3.006e^-5	1	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
3R	19215740	3R_19215740_SNP [dm3] 3R_23390018_SNP [dm6]	T	C	3.017e^-5	1	UPSTREAM CR43387 INTERGENIC
2L	15014598	2L_15014598_SNP [dm3] 2L_15014598_SNP [dm6]	T	A	3.098e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15206499	2L_15206499_SNP [dm3] 2L_15206499_SNP [dm6]	T	C	3.134e^-5	1	INTERGENIC
3L	3367255	3L_3367255_SNP [dm3] 3L_3367255_SNP [dm6]	A	C	3.355e^-5	1	INTRON kst	TF binding site mE1_TFBS_cad
3L	9137472	3L_9137472_SNP [dm3] 3L_9144372_SNP [dm6]	A	G	3.377e^-5	1	UTR_3_PRIME nwk UPSTREAM mir-4940 INTRON nwk	TF binding site mE1_TFBS_cad
3L	12715161	3L_12715161_DEL [dm3] 3L_12722061_DEL [dm6]	GTGGG	G	3.398e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15422395	2R_15422395_SNP [dm3] 2R_19534890_SNP [dm6]	A	G	3.539e^-5	1	INTRON sm
2L	8504959	2L_8504959_SNP [dm3] 2L_8504959_SNP [dm6]	T	C	3.563e^-5	1	INTRON Dh31
2R	14193734	2R_14193734_SNP [dm3] 2R_18306229_SNP [dm6]	G	A	3.642e^-5	1	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
2R	18603887	2R_18603887_SNP [dm3] 2R_22716382_SNP [dm6]	T	A	3.770e^-5	1	SYNONYMOUS_CODING CG30268 DOWNSTREAM jbug	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20706201	2L_20706201_SNP [dm3] 2L_20706201_SNP [dm6]	G	A	3.871e^-5	1	INTRON Hr38	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6110473	2L_6110473_SNP [dm3] 2L_6110473_SNP [dm6]	A	G	3.960e^-5	1	INTRON stai
3L	15082397	3L_15082397_SNP [dm3] 3L_15089297_SNP [dm6]	T	A	3.991e^-5	1	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl
2L	7432047	2L_7432047_SNP [dm3] 2L_7432047_SNP [dm6]	G	A	4.037e^-5	1	INTRON CG5958
2R	18594682	2R_18594682_SNP [dm3] 2R_22707177_SNP [dm6]	C	T	4.071e^-5	1	SYNONYMOUS_CODING Obp58d UPSTREAM Obp58c & 1 other DOWNSTREAM CR43735
3L	571533	3L_571533_SNP [dm3] 3L_571533_SNP [dm6]	G	C	4.085e^-5	1	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	571587	3L_571587_SNP [dm3] 3L_571587_SNP [dm6]	T	G	4.085e^-5	1	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14629828	2R_14629828_SNP [dm3] 2R_18742323_SNP [dm6]	G	A	4.134e^-5	1	UPSTREAM CR30121 DOWNSTREAM CG18609 INTRON Hs3st-A
X	2277460	X_2277460_DEL [dm3] X_2383427_DEL [dm6]	AA	A	4.145e^-5	1	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20650166	3R_20650166_SNP [dm3] 3R_24824444_SNP [dm6]	G	A	4.189e^-5	1	INTRON niki	TF binding site mE1_TFBS_cad
3R	20650557	3R_20650557_SNP [dm3] 3R_24824835_SNP [dm6]	G	A	4.189e^-5	1	SYNONYMOUS_CODING niki DOWNSTREAM CG43166	TF binding site mE1_TFBS_cad
3L	2612189	3L_2612189_SNP [dm3] 3L_2612189_SNP [dm6]	T	C	4.265e^-5	1	INTRON Pxn
2L	9824489	2L_9824489_SNP [dm3] 2L_9824489_SNP [dm6]	G	C	4.281e^-5	1	INTRON nAChRalpha6
3L	3367257	3L_3367257_SNP [dm3] 3L_3367257_SNP [dm6]	C	T	4.307e^-5	1	INTRON kst	TF binding site mE1_TFBS_cad
3L	14968105	3L_14968105_SNP [dm3] 3L_14975005_SNP [dm6]	A	G	4.313e^-5	1	UTR_5_PRIME Ocho UPSTREAM Ocho	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9784624	3R_9784624_DEL [dm3] 3R_13958902_DEL [dm6]	AC	A	4.341e^-5	1	UTR_5_PRIME Ipp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6395626	3L_6395626_SNP [dm3] 3L_6402526_SNP [dm6]	A	T	4.349e^-5	1	INTRON CG42747
3L	13953280	3L_13953280_SNP [dm3] 3L_13960180_SNP [dm6]	G	A	4.504e^-5	1	INTRON CG32137
3L	3368257	3L_3368257_SNP [dm3] 3L_3368257_SNP [dm6]	T	C	4.755e^-5	1	DOWNSTREAM kst INTERGENIC
3L	6975028	3L_6975028_SNP [dm3] 3L_6981928_SNP [dm6]	A	G	4.787e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18615808	2R_18615808_SNP [dm3] 2R_22728303_SNP [dm6]	C	T	4.795e^-5	1	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	7589883	3L_7589883_SNP [dm3] 3L_7596783_SNP [dm6]	A	T	4.816e^-5	1	UPSTREAM CG33275 INTRON CG33275
3L	4813620	3L_4813620_SNP [dm3] 3L_4813620_SNP [dm6]	C	T	4.842e^-5	1	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5952929	3L_5952929_SNP [dm3] 3L_5959829_SNP [dm6]	C	G	4.903e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9547185	2R_9547185_SNP [dm3] 2R_13659680_SNP [dm6]	G	C	4.938e^-5	1	INTRON fas	TF binding site mE1_TFBS_chinmo
3L	5460183	3L_5460183_SNP [dm3] 3L_5467083_SNP [dm6]	G	A	5.092e^-5	1	INTERGENIC
3L	10247203	3L_10247203_SNP [dm3] 3L_10254103_SNP [dm6]	C	T	5.133e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14753800	X_14753800_SNP [dm3] X_14859767_SNP [dm6]	G	T	5.175e^-5	1	INTRON Flo2
2L	15014648	2L_15014648_SNP [dm3] 2L_15014648_SNP [dm6]	T	A	5.212e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18609845	2R_18609845_DEL [dm3] 2R_22722340_DEL [dm6]	GG	G	5.311e^-5	1	DOWNSTREAM jbug INTRON jbug
2R	18612029	2R_18612029_SNP [dm3] 2R_22724524_SNP [dm6]	G	A	5.319e^-5	1	SPLICE_SITE_REGION jbug INTRON jbug	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3L	421626	3L_421626_SNP [dm3] 3L_421626_SNP [dm6]	T	C	5.387e^-5	1	INTERGENIC
2L	10784019	2L_10784019_SNP [dm3] 2L_10784019_SNP [dm6]	C	A	5.411e^-5	1	INTRON CG31869
2L	6289693	2L_6289693_SNP [dm3] 2L_6289693_SNP [dm6]	G	A	5.727e^-5	1	INTRON Ddr
2L	6289855	2L_6289855_SNP [dm3] 2L_6289855_SNP [dm6]	T	C	5.806e^-5	1	SYNONYMOUS_CODING Ddr
2R	11999790	2R_11999790_SNP [dm3] 2R_16112285_SNP [dm6]	T	G	5.847e^-5	1	NON_SYNONYMOUS_CODING Asph
3L	2703074	3L_2703074_INS [dm3] 3L_2703074_INS [dm6]	T	TAACTGTATT	5.951e^-5	1	INTRON Fife
3L	12561242	3L_12561242_SNP [dm3] 3L_12568142_SNP [dm6]	G	T	5.976e^-5	1	INTRON sowah
2R	9249830	2R_9249830_SNP [dm3] 2R_13362325_SNP [dm6]	C	G	5.980e^-5	1	EXON CR45312
2R	10786648	2R_10786648_INS [dm3] 2R_14899143_INS [dm6]	G	GG	6.215e^-5	1	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	1137101	3L_1137101_SNP [dm3] 3L_1137101_SNP [dm6]	G	A	6.447e^-5	1	INTERGENIC
2L	15279469	2L_15279469_SNP [dm3] 2L_15279469_SNP [dm6]	C	T	6.466e^-5	1	UPSTREAM CR45349 EXON CR43682
3L	13326319	3L_13326319_SNP [dm3] 3L_13333219_SNP [dm6]	A	G	6.468e^-5	1	INTERGENIC
2R	7262554	2R_7262554_SNP [dm3] 2R_11375049_SNP [dm6]	G	C	6.517e^-5	1	UPSTREAM CG13203 INTRON CG13203	TF binding site mE1_TFBS_chinmo
2R	18614754	2R_18614754_DEL [dm3] 2R_22727249_DEL [dm6]	AAAGATAAACATAAAGA...	A	6.626e^-5	1	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18612005	2R_18612005_DEL [dm3] 2R_22724500_DEL [dm6]	TAT	T	6.651e^-5	1	INTRON jbug	TF binding site BDTNP1_TFBS_sna mE1_TFBS_inv
X	4300225	X_4300225_SNP [dm3] X_4406192_SNP [dm6]	T	C	6.682e^-5	1	INTRON CR32773	TF binding site mE1_TFBS_chinmo
3L	10260973	3L_10260973_SNP [dm3] 3L_10267873_SNP [dm6]	T	C	6.714e^-5	1	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
2R	18605283	2R_18605283_SNP [dm3] 2R_22717778_SNP [dm6]	A	C	6.804e^-5	1	SYNONYMOUS_CODING jbug DOWNSTREAM CG30268
2R	18604773	2R_18604773_SNP [dm3] 2R_22717268_SNP [dm6]	C	T	6.836e^-5	1	DOWNSTREAM jbug & 1 other INTERGENIC
3R	18918793	3R_18918793_SNP [dm3] 3R_23093071_SNP [dm6]	G	A	6.872e^-5	1	UPSTREAM CG17110 INTRON CG13830 & 2 others	TF binding site mE1_TFBS_cad
2R	18569496	2R_18569496_SNP [dm3] 2R_22681991_SNP [dm6]	G	T	6.900e^-5	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	14968008	3L_14968008_SNP [dm3] 3L_14974908_SNP [dm6]	T	C	6.956e^-5	1	UTR_5_PRIME Ocho UPSTREAM Ocho	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22057374	3R_22057374_SNP [dm3] 3R_26231652_SNP [dm6]	T	C	7.014e^-5	1	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_chinmo
2L	4896797	2L_4896797_SNP [dm3] 2L_4896797_SNP [dm6]	A	T	7.062e^-5	1	INTRON CG3036
2L	15747130	2L_15747130_SNP [dm3] 2L_15747130_SNP [dm6]	C	T	7.068e^-5	1	UPSTREAM CycE & 1 other DOWNSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2702940	3L_2702940_SNP [dm3] 3L_2702940_SNP [dm6]	G	A	7.135e^-5	1	INTRON Fife
2L	9435012	2L_9435012_SNP [dm3] 2L_9435012_SNP [dm6]	T	A	7.188e^-5	1	UTR_3_PRIME scat UPSTREAM CG3769	TF binding site mE1_TFBS_cad
2R	18528113	2R_18528113_SNP [dm3] 2R_22640608_SNP [dm6]	T	A	7.265e^-5	1	UTR_3_PRIME RpS24 UPSTREAM CG3732	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	16376228	2R_16376228_SNP [dm3] 2R_20488723_SNP [dm6]	T	C	7.356e^-5	1	INTERGENIC
3L	6975264	3L_6975264_SNP [dm3] 3L_6982164_SNP [dm6]	C	T	7.411e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19122571	2R_19122571_SNP [dm3] 2R_23235048_SNP [dm6]	T	C	7.515e^-5	1	INTERGENIC
3R	23964216	3R_23964216_SNP [dm3] 3R_28138494_SNP [dm6]	C	A	7.674e^-5	1	INTERGENIC
2R	12887593	2R_12887593_SNP [dm3] 2R_17000088_SNP [dm6]	A	G	7.680e^-5	1	SYNONYMOUS_CODING ste24b DOWNSTREAM ste24a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14498801	3L_14498801_SNP [dm3] 3L_14505701_SNP [dm6]	A	C	7.886e^-5	1	INTRON bbg
3L	6428359	3L_6428359_SNP [dm3] 3L_6435259_SNP [dm6]	C	A	7.927e^-5	1	INTRON CG42747	TF binding site mE1_TFBS_cad
3L	13326311	3L_13326311_MNP [dm3] 3L_13333211_MNP [dm6]	TTG	AAA	7.986e^-5	1	INTERGENIC
3L	13326317	3L_13326317_SNP [dm3] 3L_13333217_SNP [dm6]	T	A	7.986e^-5	1	INTERGENIC
3L	10253213	3L_10253213_SNP [dm3] 3L_10260113_SNP [dm6]	G	A	7.989e^-5	1	INTERGENIC
3L	619507	3L_619507_SNP [dm3] 3L_619507_SNP [dm6]	T	C	8.096e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
X	2503646	X_2503646_SNP [dm3] X_2609613_SNP [dm6]	A	G	8.188e^-5	1	SYNONYMOUS_CODING CG8636 UPSTREAM Bzd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26514626	3R_26514626_SNP [dm3] 3R_30688904_SNP [dm6]	C	T	8.220e^-5	1	INTERGENIC
2R	18603499	2R_18603499_SNP [dm3] 2R_22715994_SNP [dm6]	C	A	8.229e^-5	1	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi
2R	18609865	2R_18609865_SNP [dm3] 2R_22722360_SNP [dm6]	G	A	8.258e^-5	1	DOWNSTREAM jbug INTRON jbug
3L	15754559	3L_15754559_SNP [dm3] 3L_15761459_SNP [dm6]	A	G	8.265e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5066314	2L_5066314_SNP [dm3] 2L_5066314_SNP [dm6]	A	C	8.351e^-5	1	INTRON qtc
3L	9034274	3L_9034274_INS [dm3] 3L_9041174_INS [dm6]	T	TCT	8.418e^-5	1	UPSTREAM Doc1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26505170	3R_26505170_SNP [dm3] 3R_30679448_SNP [dm6]	C	T	8.673e^-5	1	INTERGENIC
2R	6801285	2R_6801285_DEL [dm3] 2R_10913780_DEL [dm6]	CAGAGTGT	C	8.806e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12870615	2R_12870615_SNP [dm3] 2R_16983110_SNP [dm6]	G	A	8.817e^-5	1	INTRON Cbp53E
2L	6539847	2L_6539847_SNP [dm3] 2L_6539847_SNP [dm6]	G	C	8.837e^-5	1	INTRON eya
3L	8769005	3L_8769005_SNP [dm3] 3L_8775905_SNP [dm6]	G	A	8.927e^-5	1	INTRON Fhos
3L	13326315	3L_13326315_SNP [dm3] 3L_13333215_SNP [dm6]	T	A	8.997e^-5	1	INTERGENIC
2R	20223516	2R_20223516_SNP [dm3] 2R_24335993_SNP [dm6]	A	T	9.088e^-5	1	UPSTREAM CR44282 INTERGENIC
3L	6396416	3L_6396416_SNP [dm3] 3L_6403316_SNP [dm6]	G	A	9.091e^-5	1	INTRON CG42747
2L	15749307	2L_15749307_SNP [dm3] 2L_15749307_SNP [dm6]	T	A	9.107e^-5	1	DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2L	5578196	2L_5578196_SNP [dm3] 2L_5578196_SNP [dm6]	G	A	9.133e^-5	1	INTERGENIC
3L	10256149	3L_10256149_SNP [dm3] 3L_10263049_SNP [dm6]	C	A	9.139e^-5	1	DOWNSTREAM can INTERGENIC
3L	5243605	3L_5243605_DEL [dm3] 3L_5250505_DEL [dm6]	AT	A	9.270e^-5	1	INTRON shep
2R	18604766	2R_18604766_SNP [dm3] 2R_22717261_SNP [dm6]	G	A	9.304e^-5	1	DOWNSTREAM jbug & 1 other INTERGENIC
2R	14085794	2R_14085794_SNP [dm3] 2R_18198289_SNP [dm6]	G	A	9.402e^-5	1	INTERGENIC
2R	16300345	2R_16300345_SNP [dm3] 2R_20412840_SNP [dm6]	C	T	9.412e^-5	1	INTERGENIC
2R	18612012	2R_18612012_SNP [dm3] 2R_22724507_SNP [dm6]	C	G	9.435e^-5	1	INTRON jbug	TF binding site BDTNP1_TFBS_sna mE1_TFBS_inv
X	9365936	X_9365936_SNP [dm3] X_9471903_SNP [dm6]	A	G	9.443e^-5	1	INTRON mgl	TF binding site mE1_TFBS_chinmo
3L	15957612	3L_15957612_SNP [dm3] 3L_15964512_SNP [dm6]	G	T	9.477e^-5	1	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15749205	2L_15749205_SNP [dm3] 2L_15749205_SNP [dm6]	A	G	9.544e^-5	1	DOWNSTREAM l_2_35Di & 1 other INTERGENIC
X	4281567	X_4281567_SNP [dm3] X_4387534_SNP [dm6]	A	T	9.554e^-5	1	DOWNSTREAM CR32773 INTERGENIC	regulatory region REDfly_CRMs
2L	15206607	2L_15206607_SNP [dm3] 2L_15206607_SNP [dm6]	T	C	9.559e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2703103	3L_2703103_SNP [dm3] 3L_2703103_SNP [dm6]	C	A	9.562e^-5	1	INTRON Fife
2R	8488375	2R_8488375_SNP [dm3] 2R_12600870_SNP [dm6]	A	G	9.576e^-5	1	INTRON Amph
2R	14630330	2R_14630330_SNP [dm3] 2R_18742825_SNP [dm6]	A	G	9.598e^-5	1	SYNONYMOUS_CODING CG18609 DOWNSTREAM CG17821 INTRON Hs3st-A
X	13444507	X_13444507_SNP [dm3] X_13550474_SNP [dm6]	A	G	9.639e^-5	1	INTERGENIC
3L	2694665	3L_2694665_SNP [dm3] 3L_2694665_SNP [dm6]	T	G	9.665e^-5	1	INTRON Fife
3R	21756863	3R_21756863_SNP [dm3] 3R_25931141_SNP [dm6]	A	G	9.678e^-5	1	UPSTREAM CR34024 INTRON CCAP-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6539813	2L_6539813_SNP [dm3] 2L_6539813_SNP [dm6]	A	G	9.679e^-5	1	INTRON eya
3L	13326320	3L_13326320_DEL [dm3] 3L_13333220_DEL [dm6]	TACCTCGCCT	T	9.699e^-5	1	INTERGENIC
2L	9532049	2L_9532049_SNP [dm3] 2L_9532049_SNP [dm6]	T	A	9.765e^-5	1	INTRON Oatp30B
2R	18606780	2R_18606780_SNP [dm3] 2R_22719275_SNP [dm6]	C	T	9.807e^-5	1	NON_SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2703024	3L_2703024_SNP [dm3] 3L_2703024_SNP [dm6]	T	C	9.821e^-5	1	INTRON Fife
3R	20649864	3R_20649864_SNP [dm3] 3R_24824142_SNP [dm6]	G	A	9.887e^-5	1	SPLICE_SITE_REGION niki INTRON niki	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2694699	3L_2694699_SNP [dm3] 3L_2694699_SNP [dm6]	A	T	9.941e^-5	1	INTRON Fife
X	6705131	X_6705131_SNP [dm3] X_6811098_SNP [dm6]	C	T	9.942e^-5	1	INTRON pod1	TF binding site mE1_TFBS_cad
3L	15881261	3L_15881261_SNP [dm3] 3L_15888161_SNP [dm6]	C	T	9.975e^-5	1	INTRON pHCl
2R	6879367	2R_6879367_SNP [dm3] 2R_10991862_SNP [dm6]	G	A	1.002e^-4	1	INTRON luna	TF binding site mE1_TFBS_chinmo
2R	6801279	2R_6801279_SNP [dm3] 2R_10913774_SNP [dm6]	A	G	1.005e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1227651	2L_1227651_SNP [dm3] 2L_1227651_SNP [dm6]	A	G	1.013e^-4	1	INTRON CG42329
3L	10256142	3L_10256142_SNP [dm3] 3L_10263042_SNP [dm6]	T	C	1.016e^-4	1	DOWNSTREAM can INTERGENIC
X	12820227	X_12820227_SNP [dm3] X_12926194_SNP [dm6]	T	G	1.022e^-4	1	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13915548	3L_13915548_SNP [dm3] 3L_13922448_SNP [dm6]	T	A	1.022e^-4	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	16553727	3R_16553727_SNP [dm3] 3R_20728005_SNP [dm6]	A	T	1.032e^-4	1	INTERGENIC
3L	2694668	3L_2694668_SNP [dm3] 3L_2694668_SNP [dm6]	C	T	1.039e^-4	1	INTRON Fife
2R	18135822	2R_18135822_INS [dm3] 2R_22248317_INS [dm6]	G	GTGG	1.056e^-4	1	INTRON dve	regulatory region REDfly_CRMs
2L	15749316	2L_15749316_SNP [dm3] 2L_15749316_SNP [dm6]	A	T	1.058e^-4	1	DOWNSTREAM l_2_35Di & 1 other INTERGENIC
3L	8569745	3L_8569745_SNP [dm3] 3L_8576645_SNP [dm6]	C	G	1.066e^-4	1	UPSTREAM CG43078 & 1 other INTERGENIC
2L	16207451	2L_16207451_SNP [dm3] 2L_16207451_SNP [dm6]	T	G	1.073e^-4	1	INTERGENIC
3L	2694661	3L_2694661_SNP [dm3] 3L_2694661_SNP [dm6]	T	A	1.082e^-4	1	INTRON Fife
3L	10325118	3L_10325118_SNP [dm3] 3L_10332018_SNP [dm6]	C	G	1.088e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv
3L	14498169	3L_14498169_SNP [dm3] 3L_14505069_SNP [dm6]	G	A	1.089e^-4	1	INTRON bbg
2L	4857393	2L_4857393_SNP [dm3] 2L_4857393_SNP [dm6]	C	A	1.090e^-4	1	INTRON pog
3L	11338583	3L_11338583_INS [dm3] 3L_11345483_INS [dm6]	A	AC	1.099e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	2780137	2R_2780137_SNP [dm3] 2R_6892632_SNP [dm6]	G	C	1.100e^-4	1	INTRON CG30158
2R	18615283	2R_18615283_SNP [dm3] 2R_22727778_SNP [dm6]	G	T	1.101e^-4	1	UTR_5_PRIME jbug INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2L	15014712	2L_15014712_SNP [dm3] 2L_15014712_SNP [dm6]	A	C	1.104e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10324076	3R_10324076_SNP [dm3] 3R_14498354_SNP [dm6]	A	G	1.110e^-4	1	INTRON CR44177	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14258357	2L_14258357_SNP [dm3] 2L_14258357_SNP [dm6]	C	T	1.111e^-4	1	INTERGENIC
2L	3770914	2L_3770914_SNP [dm3] 2L_3770914_SNP [dm6]	G	C	1.115e^-4	1	UPSTREAM CR43704 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	23537152	3R_23537152_SNP [dm3] 3R_27711430_SNP [dm6]	T	C	1.122e^-4	1	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26615463	3R_26615463_SNP [dm3] 3R_30789741_SNP [dm6]	C	T	1.124e^-4	1	UTR_3_PRIME wts DOWNSTREAM zfh1
3L	740760	3L_740760_SNP [dm3] 3L_740760_SNP [dm6]	A	G	1.128e^-4	1	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3R	9875423	3R_9875423_SNP [dm3] 3R_14049701_SNP [dm6]	A	G	1.137e^-4	1	INTERGENIC
3R	2699663	3R_2699663_SNP [dm3] 3R_6873941_SNP [dm6]	T	A	1.137e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2R	5281576	2R_5281576_SNP [dm3] 2R_9394071_SNP [dm6]	T	C	1.139e^-4	1	SYNONYMOUS_CODING l_2_03659	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7264227	2R_7264227_SNP [dm3] 2R_11376722_SNP [dm6]	T	A	1.146e^-4	1	SYNONYMOUS_CODING CG13203 DOWNSTREAM Tsp47F	TF binding site mE1_TFBS_chinmo
2L	1462469	2L_1462469_SNP [dm3] 2L_1462469_SNP [dm6]	C	T	1.147e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12870345	2R_12870345_SNP [dm3] 2R_16982840_SNP [dm6]	T	A	1.154e^-4	1	INTRON Cbp53E
3L	8078005	3L_8078005_SNP [dm3] 3L_8084905_SNP [dm6]	T	C	1.164e^-4	1	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
3R	17941018	3R_17941018_SNP [dm3] 3R_22115296_SNP [dm6]	C	G	1.166e^-4	1	DOWNSTREAM Ir94b & 1 other INTERGENIC
2R	14871562	2R_14871562_SNP [dm3] 2R_18984057_SNP [dm6]	T	C	1.172e^-4	1	INTERGENIC
X	13471230	X_13471230_SNP [dm3] X_13577197_SNP [dm6]	G	T	1.173e^-4	1	UTR_5_PRIME Tango13	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17691191	2R_17691191_SNP [dm3] 2R_21803686_SNP [dm6]	G	C	1.197e^-4	1	EXON CR9284
2L	9621299	2L_9621299_SNP [dm3] 2L_9621299_SNP [dm6]	A	G	1.197e^-4	1	SYNONYMOUS_CODING GlcAT-S
3R	4858700	3R_4858700_SNP [dm3] 3R_9032978_SNP [dm6]	C	T	1.208e^-4	1	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4424003	X_4424003_SNP [dm3] X_4529970_SNP [dm6]	C	G	1.212e^-4	1	UPSTREAM CG3556 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
X	14846282	X_14846282_DEL [dm3] X_14952249_DEL [dm6]	ATATGTA	A	1.214e^-4	1	UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12823475	2R_12823475_SNP [dm3] 2R_16935970_SNP [dm6]	T	G	1.216e^-4	1	INTRON Pkc53E
2R	12253035	2R_12253035_SNP [dm3] 2R_16365530_SNP [dm6]	A	C	1.217e^-4	1	UTR_5_PRIME CG15711	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9447153	2L_9447153_SNP [dm3] 2L_9447153_SNP [dm6]	A	G	1.221e^-4	1	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	619511	3L_619511_SNP [dm3] 3L_619511_SNP [dm6]	T	C	1.224e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
2R	9553695	2R_9553695_SNP [dm3] 2R_13666190_SNP [dm6]	A	C	1.227e^-4	1	SYNONYMOUS_CODING CG13337 INTRON fas
2R	19615942	2R_19615942_SNP [dm3] 2R_23728419_SNP [dm6]	T	G	1.230e^-4	1	INTRON Sesn
3L	15082401	3L_15082401_SNP [dm3] 3L_15089301_SNP [dm6]	G	T	1.234e^-4	1	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl
2L	9532056	2L_9532056_SNP [dm3] 2L_9532056_SNP [dm6]	A	G	1.236e^-4	1	INTRON Oatp30B
2L	14261781	2L_14261781_SNP [dm3] 2L_14261781_SNP [dm6]	C	T	1.237e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	18614515	2R_18614515_SNP [dm3] 2R_22727010_SNP [dm6]	A	T	1.238e^-4	1	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14281057	2R_14281057_SNP [dm3] 2R_18393552_SNP [dm6]	G	T	1.248e^-4	1	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_inv
3L	992704	3L_992704_SNP [dm3] 3L_992704_SNP [dm6]	C	T	1.257e^-4	1	UTR_3_PRIME Glut1
3L	7219527	3L_7219527_SNP [dm3] 3L_7226427_SNP [dm6]	T	A	1.260e^-4	1	INTERGENIC
2R	18603520	2R_18603520_SNP [dm3] 2R_22716015_SNP [dm6]	A	G	1.264e^-4	1	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi
2L	313440	2L_313440_SNP [dm3] 2L_313440_SNP [dm6]	A	G	1.266e^-4	1	INTRON Plc21C
3R	25383841	3R_25383841_SNP [dm3] 3R_29558119_SNP [dm6]	A	T	1.269e^-4	1	INTRON Dr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18603590	2R_18603590_SNP [dm3] 2R_22716085_SNP [dm6]	C	T	1.270e^-4	1	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	25383821	3R_25383821_SNP [dm3] 3R_29558099_SNP [dm6]	C	A	1.279e^-4	1	INTRON Dr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18575434	2L_18575434_SNP [dm3] 2L_18575434_SNP [dm6]	C	T	1.280e^-4	1	INTRON Pde11
3R	14914361	3R_14914361_SNP [dm3] 3R_19088639_SNP [dm6]	G	A	1.282e^-4	1	INTRON cdi
2R	19122570	2R_19122570_SNP [dm3] 2R_23235047_SNP [dm6]	T	C	1.283e^-4	1	INTERGENIC
X	13959259	X_13959259_SNP [dm3] X_14065226_SNP [dm6]	C	A	1.296e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9788883	3L_9788883_SNP [dm3] 3L_9795783_SNP [dm6]	C	T	1.300e^-4	1	INTRON Zasp67
3L	15846662	3L_15846662_SNP [dm3] 3L_15853562_SNP [dm6]	T	C	1.307e^-4	1	INTRON pHCl	TF binding site mE1_TFBS_kn
3L	1792790	3L_1792790_SNP [dm3] 3L_1792790_SNP [dm6]	G	A	1.308e^-4	1	NON_SYNONYMOUS_CODING dlt INTRON alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19347805	3R_19347805_SNP [dm3] 3R_23522083_SNP [dm6]	C	T	1.312e^-4	1	UPSTREAM CG10177 DOWNSTREAM CG10175 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc
X	16010708	X_16010708_SNP [dm3] X_16116675_SNP [dm6]	C	T	1.317e^-4	1	INTERGENIC
2R	7462766	2R_7462766_SNP [dm3] 2R_11575261_SNP [dm6]	C	G	1.317e^-4	1	INTERGENIC
3R	23011102	3R_23011102_SNP [dm3] 3R_27185380_SNP [dm6]	G	A	1.338e^-4	1	INTRON Ser	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17691095	2R_17691095_SNP [dm3] 2R_21803590_SNP [dm6]	T	G	1.339e^-4	1	INTRON CR9284
3L	10935902	3L_10935902_SNP [dm3] 3L_10942802_SNP [dm6]	C	T	1.349e^-4	1	INTERGENIC
3L	8569758	3L_8569758_SNP [dm3] 3L_8576658_SNP [dm6]	A	G	1.353e^-4	1	UPSTREAM CG43078 & 1 other INTERGENIC
2L	4806841	2L_4806841_SNP [dm3] 2L_4806841_SNP [dm6]	G	T	1.354e^-4	1	INTERGENIC
X	9706750	X_9706750_SNP [dm3] X_9812717_SNP [dm6]	C	G	1.373e^-4	1	INTRON CG32698
2R	17904584	2R_17904584_SNP [dm3] 2R_22017079_SNP [dm6]	A	G	1.374e^-4	1	INTRON CG34370
3L	16740192	3L_16740192_SNP [dm3] 3L_16747092_SNP [dm6]	C	T	1.375e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16010710	X_16010710_SNP [dm3] X_16116677_SNP [dm6]	G	C	1.383e^-4	1	INTERGENIC
2L	1462107	2L_1462107_SNP [dm3] 2L_1462107_SNP [dm6]	C	A	1.391e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18609913	2R_18609913_SNP [dm3] 2R_22722408_SNP [dm6]	T	A	1.405e^-4	1	DOWNSTREAM jbug INTRON jbug
X	14861990	X_14861990_SNP [dm3] X_14967957_SNP [dm6]	G	C	1.420e^-4	1	INTRON eag
X	9734213	X_9734213_SNP [dm3] X_9840180_SNP [dm6]	C	T	1.427e^-4	1	INTRON CG32698
2L	8362750	2L_8362750_SNP [dm3] 2L_8362750_SNP [dm6]	T	C	1.446e^-4	1	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	421618	3L_421618_SNP [dm3] 3L_421618_SNP [dm6]	T	G	1.448e^-4	1	INTERGENIC
X	9328507	X_9328507_SNP [dm3] X_9434474_SNP [dm6]	A	G	1.451e^-4	1	INTRON mgl
2R	16526088	2R_16526088_SNP [dm3] 2R_20638583_SNP [dm6]	C	A	1.463e^-4	1	SYNONYMOUS_CODING rig DOWNSTREAM CG13436
3L	8077974	3L_8077974_SNP [dm3] 3L_8084874_SNP [dm6]	C	T	1.469e^-4	1	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
3L	16345997	3L_16345997_SNP [dm3] 3L_16352897_SNP [dm6]	A	C	1.483e^-4	1	SYNONYMOUS_CODING CG4933 UPSTREAM CG4925 DOWNSTREAM Pdh	TF binding site mE1_TFBS_sens
2L	21727956	2L_21727956_SNP [dm3] 2L_21727956_SNP [dm6]	T	A	1.484e^-4	1	INTRON CG31619
2L	15749361	2L_15749361_SNP [dm3] 2L_15749361_SNP [dm6]	T	C	1.504e^-4	1	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
2R	13001518	2R_13001518_SNP [dm3] 2R_17114013_SNP [dm6]	A	G	1.509e^-4	1	SYNONYMOUS_CODING CG15611	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15422150	2R_15422150_SNP [dm3] 2R_19534645_SNP [dm6]	C	G	1.512e^-4	1	INTRON sm
2R	19194274	2R_19194274_SNP [dm3] 2R_23306751_SNP [dm6]	A	C	1.515e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12369537	X_12369537_INS [dm3] X_12475504_INS [dm6]	C	CC	1.520e^-4	1	INTRON CG42258
2R	6878423	2R_6878423_SNP [dm3] 2R_10990918_SNP [dm6]	A	G	1.532e^-4	1	SYNONYMOUS_CODING luna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1227622	2L_1227622_SNP [dm3] 2L_1227622_SNP [dm6]	G	A	1.535e^-4	1	INTRON CG42329
2R	5214887	2R_5214887_SNP [dm3] 2R_9327382_SNP [dm6]	A	G	1.540e^-4	1	INTRON CG13954 & 1 other
2L	9637410	2L_9637410_SNP [dm3] 2L_9637410_SNP [dm6]	C	T	1.541e^-4	1	INTRON Apoltp
2R	16288703	2R_16288703_SNP [dm3] 2R_20401198_SNP [dm6]	G	A	1.543e^-4	1	INTERGENIC
2R	18611969	2R_18611969_SNP [dm3] 2R_22724464_SNP [dm6]	C	G	1.549e^-4	1	INTRON jbug	TF binding site BDTNP1_TFBS_sna mE1_TFBS_inv
3R	24474097	3R_24474097_DEL [dm3] 3R_28648375_DEL [dm6]	TGGCT	T	1.549e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4874480	3R_4874480_INS [dm3] 3R_9048758_INS [dm6]	A	ACATA	1.550e^-4	1	UPSTREAM Rel & 1 other INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2481665	2R_2481665_SNP [dm3] 2R_6594160_SNP [dm6]	C	T	1.554e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	11484632	2R_11484632_SNP [dm3] 2R_15597127_SNP [dm6]	G	A	1.557e^-4	1	INTERGENIC
2L	8547656	2L_8547656_SNP [dm3] 2L_8547656_SNP [dm6]	A	T	1.571e^-4	1	INTRON Sema-1a
3R	8161603	3R_8161603_SNP [dm3] 3R_12335881_SNP [dm6]	C	G	1.582e^-4	1	UPSTREAM CR44941 INTERGENIC
2L	15749152	2L_15749152_SNP [dm3] 2L_15749152_SNP [dm6]	T	A	1.603e^-4	1	DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2R	16580140	2R_16580140_SNP [dm3] 2R_20692635_SNP [dm6]	A	T	1.620e^-4	1	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
2L	14387352	2L_14387352_SNP [dm3] 2L_14387352_SNP [dm6]	T	C	1.621e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3729848	X_3729848_SNP [dm3] X_3835815_SNP [dm6]	T	C	1.634e^-4	1	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20950803	X_20950803_SNP [dm3] X_21079776_SNP [dm6]	G	A	1.640e^-4	1	DOWNSTREAM bves INTRON bves	TF binding site BDTNP1_TFBS_dl
3L	5959040	3L_5959040_SNP [dm3] 3L_5965940_SNP [dm6]	A	G	1.647e^-4	1	INTERGENIC
2R	16282087	2R_16282087_SNP [dm3] 2R_20394582_SNP [dm6]	G	A	1.651e^-4	1	INTERGENIC
3L	17440456	3L_17440456_SNP [dm3] 3L_17447356_SNP [dm6]	G	A	1.658e^-4	1	INTRON CG18265
3L	12561408	3L_12561408_SNP [dm3] 3L_12568308_SNP [dm6]	A	G	1.660e^-4	1	INTRON sowah
2R	18610791	2R_18610791_DEL [dm3] 2R_22723286_DEL [dm6]	ACTTCACATGTGTATAAAGA...	A	1.663e^-4	1	INTRON jbug	TF binding site mE1_TFBS_cad
2L	21725821	2L_21725821_SNP [dm3] 2L_21725821_SNP [dm6]	A	C	1.664e^-4	1	INTRON CG31619	transposable element FlyBase
2R	18609920	2R_18609920_SNP [dm3] 2R_22722415_SNP [dm6]	A	T	1.676e^-4	1	DOWNSTREAM jbug INTRON jbug
3L	10325062	3L_10325062_SNP [dm3] 3L_10331962_SNP [dm6]	T	A	1.678e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv
2R	14172307	2R_14172307_SNP [dm3] 2R_18284802_SNP [dm6]	T	A	1.679e^-4	1	DOWNSTREAM sbb INTRON sbb
X	7648445	X_7648445_SNP [dm3] X_7754412_SNP [dm6]	T	C	1.680e^-4	1	INTERGENIC
2R	8690070	2R_8690070_SNP [dm3] 2R_12802565_SNP [dm6]	T	G	1.686e^-4	1	DOWNSTREAM sca INTERGENIC
3R	19705332	3R_19705332_INS [dm3] 3R_23879610_INS [dm6]	T	TATTATT	1.687e^-4	1	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10912445	2R_10912445_INS [dm3] 2R_15024940_INS [dm6]	C	CC	1.699e^-4	1	UPSTREAM CR45256 & 1 other INTRON hbs	TF binding site BDTNP1_TFBS_dl
X	7648434	X_7648434_SNP [dm3] X_7754401_SNP [dm6]	T	C	1.707e^-4	1	INTERGENIC
2R	14172296	2R_14172296_SNP [dm3] 2R_18284791_SNP [dm6]	G	A	1.711e^-4	1	DOWNSTREAM sbb INTRON sbb
2R	19512850	2R_19512850_SNP [dm3] 2R_23625327_SNP [dm6]	G	T	1.711e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14667899	2R_14667899_SNP [dm3] 2R_18780394_SNP [dm6]	G	C	1.718e^-4	1	INTERGENIC
3L	15899551	3L_15899551_SNP [dm3] 3L_15906451_SNP [dm6]	T	C	1.721e^-4	1	INTRON sff
3L	6396662	3L_6396662_SNP [dm3] 3L_6403562_SNP [dm6]	A	G	1.731e^-4	1	INTRON CG42747
2R	14082556	2R_14082556_SNP [dm3] 2R_18195051_SNP [dm6]	A	T	1.732e^-4	1	INTERGENIC
2L	13176976	2L_13176976_SNP [dm3] 2L_13176976_SNP [dm6]	T	G	1.734e^-4	1	UPSTREAM CG5439 & 1 other DOWNSTREAM CG43925 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
2L	15153286	2L_15153286_SNP [dm3] 2L_15153286_SNP [dm6]	T	G	1.739e^-4	1	INTERGENIC
3R	23126858	3R_23126858_SNP [dm3] 3R_27301136_SNP [dm6]	C	T	1.745e^-4	1	INTRON CG3339	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	11999642	2R_11999642_SNP [dm3] 2R_16112137_SNP [dm6]	C	G	1.753e^-4	1	NON_SYNONYMOUS_CODING Asph
3R	22918756	3R_22918756_SNP [dm3] 3R_27093034_SNP [dm6]	A	G	1.754e^-4	1	UPSTREAM CG14258 INTERGENIC
3R	24844793	3R_24844793_INS [dm3] 3R_29019071_INS [dm6]	A	AA	1.772e^-4	1	INTRON wat
3L	3367252	3L_3367252_SNP [dm3] 3L_3367252_SNP [dm6]	C	T	1.773e^-4	1	INTRON kst	TF binding site mE1_TFBS_cad
3R	19745600	3R_19745600_SNP [dm3] 3R_23919878_SNP [dm6]	C	A	1.777e^-4	1	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14829488	2R_14829488_SNP [dm3] 2R_18941983_SNP [dm6]	A	G	1.782e^-4	1	INTRON sano
2R	19520319	2R_19520319_SNP [dm3] 2R_23632796_SNP [dm6]	T	C	1.783e^-4	1	UTR_5_PRIME retn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	15014674	2L_15014674_DEL [dm3] 2L_15014674_DEL [dm6]	CTGTGCCTGCAAATGTTTTA...	C	1.797e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16356816	2R_16356816_SNP [dm3] 2R_20469311_SNP [dm6]	T	C	1.806e^-4	1	INTRON CG12484
2R	16820061	2R_16820061_SNP [dm3] 2R_20932556_SNP [dm6]	C	G	1.810e^-4	1	INTRON Rx	TF binding site BDTNP1_TFBS_dl
3L	571997	3L_571997_SNP [dm3] 3L_571997_SNP [dm6]	G	A	1.812e^-4	1	INTRON hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15654270	3L_15654270_SNP [dm3] 3L_15661170_SNP [dm6]	A	G	1.825e^-4	1	UPSTREAM Eig71Ek & 2 others DOWNSTREAM Eig71Ei INTERGENIC
3L	6395564	3L_6395564_SNP [dm3] 3L_6402464_SNP [dm6]	G	A	1.831e^-4	1	INTRON CG42747
2L	8325962	2L_8325962_SNP [dm3] 2L_8325962_SNP [dm6]	T	C	1.845e^-4	1	UPSTREAM CG7781 INTERGENIC
2R	7462806	2R_7462806_SNP [dm3] 2R_11575301_SNP [dm6]	A	G	1.850e^-4	1	INTERGENIC
3L	5505206	3L_5505206_SNP [dm3] 3L_5512106_SNP [dm6]	A	G	1.857e^-4	1	DOWNSTREAM Lkr INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
2L	11499407	2L_11499407_SNP [dm3] 2L_11499407_SNP [dm6]	A	G	1.873e^-4	1	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	582018	3L_582018_SNP [dm3] 3L_582018_SNP [dm6]	C	G	1.904e^-4	1	SYNONYMOUS_CODING Ppm1 DOWNSTREAM hipk & 1 other
2R	12223649	2R_12223649_SNP [dm3] 2R_16336144_SNP [dm6]	G	A	1.913e^-4	1	UTR_5_PRIME Hmgs UPSTREAM Hmgs INTRON Vha44	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	7648404	X_7648404_SNP [dm3] X_7754371_SNP [dm6]	C	A	1.914e^-4	1	INTERGENIC
X	11334406	X_11334406_SNP [dm3] X_11440373_SNP [dm6]	A	C	1.928e^-4	1	INTRON Evi5
2R	2481615	2R_2481615_SNP [dm3] 2R_6594110_SNP [dm6]	C	T	1.932e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	22927515	3R_22927515_SNP [dm3] 3R_27101793_SNP [dm6]	T	G	1.943e^-4	1	INTRON CG17189
3R	25383794	3R_25383794_DEL [dm3] 3R_29558072_DEL [dm6]	TC	T	1.962e^-4	1	INTRON Dr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18369048	2R_18369048_SNP [dm3] 2R_22481543_SNP [dm6]	G	A	1.966e^-4	1	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3265012	2L_3265012_SNP [dm3] 2L_3265012_SNP [dm6]	C	A	1.976e^-4	1	EXON CR45706
2R	14829487	2R_14829487_SNP [dm3] 2R_18941982_SNP [dm6]	G	A	1.976e^-4	1	INTRON sano
3L	12893217	3L_12893217_SNP [dm3] 3L_12900117_SNP [dm6]	A	T	1.977e^-4	1	INTERGENIC
2R	18606790	2R_18606790_SNP [dm3] 2R_22719285_SNP [dm6]	C	T	2.002e^-4	1	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2481625	2R_2481625_SNP [dm3] 2R_6594120_SNP [dm6]	G	T	2.008e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	2692744	3L_2692744_SNP [dm3] 3L_2692744_SNP [dm6]	A	T	2.010e^-4	1	INTRON Fife
3R	26505012	3R_26505012_SNP [dm3] 3R_30679290_SNP [dm6]	C	T	2.018e^-4	1	INTERGENIC
X	20950784	X_20950784_SNP [dm3] X_21079757_SNP [dm6]	C	A	2.021e^-4	1	DOWNSTREAM bves INTRON bves	TF binding site BDTNP1_TFBS_dl
3L	2242989	3L_2242989_SNP [dm3] 3L_2242989_SNP [dm6]	C	A	2.022e^-4	1	SYNONYMOUS_CODING ACXD UTR_3_PRIME ACXD	TF binding site mE1_TFBS_chinmo
2L	15090517	2L_15090517_SNP [dm3] 2L_15090517_SNP [dm6]	A	G	2.029e^-4	1	INTRON CG15270
3R	25780999	3R_25780999_SNP [dm3] 3R_29955277_SNP [dm6]	C	T	2.033e^-4	1	INTRON TkR99D
3L	13677328	3L_13677328_SNP [dm3] 3L_13684228_SNP [dm6]	T	C	2.035e^-4	1	INTRON bru-3
2R	16387412	2R_16387412_SNP [dm3] 2R_20499907_SNP [dm6]	C	T	2.036e^-4	1	INTERGENIC
2R	14829490	2R_14829490_SNP [dm3] 2R_18941985_SNP [dm6]	C	A	2.047e^-4	1	INTRON sano
3L	1554019	3L_1554019_SNP [dm3] 3L_1554019_SNP [dm6]	A	C	2.050e^-4	1	DOWNSTREAM Cct1 INTRON Cct2	TF binding site mE1_TFBS_cad
3L	6396976	3L_6396976_SNP [dm3] 3L_6403876_SNP [dm6]	G	A	2.055e^-4	1	INTRON CG42747
2L	15931346	2L_15931346_SNP [dm3] 2L_15931346_SNP [dm6]	T	C	2.057e^-4	1	INTRON beat-Ib
2L	4422778	2L_4422778_SNP [dm3] 2L_4422778_SNP [dm6]	A	G	2.060e^-4	1	INTRON CG15431
2R	19740513	2R_19740513_SNP [dm3] 2R_23852990_SNP [dm6]	G	C	2.070e^-4	1	SYNONYMOUS_CODING gbb DOWNSTREAM bgcn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4463463	3R_4463463_SNP [dm3] 3R_8637741_SNP [dm6]	G	A	2.084e^-4	1	INTERGENIC
2L	11746376	2L_11746376_SNP [dm3] 2L_11746376_SNP [dm6]	G	T	2.093e^-4	1	INTERGENIC
3R	18896241	3R_18896241_SNP [dm3] 3R_23070519_SNP [dm6]	G	A	2.093e^-4	1	UTR_3_PRIME CG13830
2R	16580040	2R_16580040_DEL [dm3] 2R_20692535_DEL [dm6]	TT	T	2.119e^-4	1	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
X	15664908	X_15664908_SNP [dm3] X_15770875_SNP [dm6]	C	A	2.122e^-4	1	SYNONYMOUS_CODING CG33172	TF binding site mE1_TFBS_sens
2L	4631737	2L_4631737_SNP [dm3] 2L_4631737_SNP [dm6]	T	C	2.122e^-4	1	INTERGENIC
2R	15546366	2R_15546366_SNP [dm3] 2R_19658861_SNP [dm6]	T	C	2.132e^-4	1	DOWNSTREAM CR44504 INTRON CG15125	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8504960	2L_8504960_SNP [dm3] 2L_8504960_SNP [dm6]	G	A	2.138e^-4	1	INTRON Dh31
3R	26087341	3R_26087341_SNP [dm3] 3R_30261619_SNP [dm6]	A	T	2.159e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	17212814	2L_17212814_SNP [dm3] 2L_17212814_SNP [dm6]	G	A	2.176e^-4	1	INTRON beat-IIIc
3L	10257263	3L_10257263_SNP [dm3] 3L_10264163_SNP [dm6]	A	G	2.189e^-4	1	NON_SYNONYMOUS_CODING can
2L	9447002	2L_9447002_SNP [dm3] 2L_9447002_SNP [dm6]	A	C	2.190e^-4	1	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	25797603	3R_25797603_SNP [dm3] 3R_29971881_SNP [dm6]	G	C	2.212e^-4	1	INTERGENIC
3L	6396128	3L_6396128_SNP [dm3] 3L_6403028_SNP [dm6]	G	A	2.216e^-4	1	INTRON CG42747
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	2.217e^-4	1	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2L	15206480	2L_15206480_SNP [dm3] 2L_15206480_SNP [dm6]	A	G	2.219e^-4	1	INTERGENIC
2R	2481675	2R_2481675_SNP [dm3] 2R_6594170_SNP [dm6]	T	A	2.221e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	12561426	3L_12561426_SNP [dm3] 3L_12568326_SNP [dm6]	T	G	2.221e^-4	1	INTRON sowah
3L	2694678	3L_2694678_SNP [dm3] 3L_2694678_SNP [dm6]	T	A	2.223e^-4	1	INTRON Fife
3L	2694684	3L_2694684_SNP [dm3] 3L_2694684_SNP [dm6]	T	G	2.223e^-4	1	INTRON Fife
3R	14309518	3R_14309518_SNP [dm3] 3R_18483796_SNP [dm6]	T	A	2.225e^-4	1	INTRON fru
3L	5243602	3L_5243602_SNP [dm3] 3L_5250502_SNP [dm6]	T	C	2.228e^-4	1	INTRON shep
3L	3862666	3L_3862666_SNP [dm3] 3L_3862666_SNP [dm6]	T	G	2.230e^-4	1	DOWNSTREAM Awh INTERGENIC	TF binding site mE1_TFBS_cnc
3L	16403972	3L_16403972_SNP [dm3] 3L_16410872_SNP [dm6]	C	A	2.236e^-4	1	INTRON fax	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	14168901	2R_14168901_SNP [dm3] 2R_18281396_SNP [dm6]	A	G	2.240e^-4	1	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1099815	2L_1099815_SNP [dm3] 2L_1099815_SNP [dm6]	C	T	2.248e^-4	1	INTRON CG4629
3L	949862	3L_949862_SNP [dm3] 3L_949862_SNP [dm6]	C	G	2.249e^-4	1	INTRON Glut1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	4114645	2R_4114645_SNP [dm3] 2R_8227140_SNP [dm6]	T	A	2.251e^-4	1	DOWNSTREAM LRP1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9053529	3L_9053529_SNP [dm3] 3L_9060429_SNP [dm6]	C	G	2.256e^-4	1	INTRON Argk
3R	14309927	3R_14309927_SNP [dm3] 3R_18484205_SNP [dm6]	T	C	2.256e^-4	1	INTRON fru
2L	4998326	2L_4998326_SNP [dm3] 2L_4998326_SNP [dm6]	A	C	2.263e^-4	1	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_inv mE1_TFBS_Trl
2R	14828748	2R_14828748_SNP [dm3] 2R_18941243_SNP [dm6]	C	T	2.271e^-4	1	INTRON sano
3L	20138514	3L_20138514_SNP [dm3] 3L_20145414_SNP [dm6]	G	A	2.280e^-4	1	INTERGENIC
X	9328522	X_9328522_SNP [dm3] X_9434489_SNP [dm6]	A	C	2.288e^-4	1	INTRON mgl
2R	16289285	2R_16289285_SNP [dm3] 2R_20401780_SNP [dm6]	G	C	2.290e^-4	1	INTERGENIC
3L	8849107	3L_8849107_SNP [dm3] 3L_8856007_SNP [dm6]	G	A	2.298e^-4	1	INTRON dally
3R	26615534	3R_26615534_SNP [dm3] 3R_30789812_SNP [dm6]	A	T	2.303e^-4	1	UTR_3_PRIME wts DOWNSTREAM zfh1
3R	9820942	3R_9820942_SNP [dm3] 3R_13995220_SNP [dm6]	A	T	2.303e^-4	1	INTRON rdx
2L	10530516	2L_10530516_SNP [dm3] 2L_10530516_SNP [dm6]	T	C	2.309e^-4	1	SYNONYMOUS_CODING Lip4
2L	14855888	2L_14855888_SNP [dm3] 2L_14855888_SNP [dm6]	A	C	2.310e^-4	1	INTERGENIC
3L	13953197	3L_13953197_SNP [dm3] 3L_13960097_SNP [dm6]	G	A	2.311e^-4	1	INTRON CG32137
2R	17111583	2R_17111583_SNP [dm3] 2R_21224078_SNP [dm6]	A	G	2.327e^-4	1	UPSTREAM ASPP INTRON ASPP
2R	10673452	2R_10673452_MNP [dm3] 2R_14785947_MNP [dm6]	ACT	TAA	2.328e^-4	1	INTRON kn
2R	7379875	2R_7379875_SNP [dm3] 2R_11492370_SNP [dm6]	A	G	2.333e^-4	1	INTRON inv
2L	7191874	2L_7191874_SNP [dm3] 2L_7191874_SNP [dm6]	A	G	2.334e^-4	1	NON_SYNONYMOUS_CODING CG4497	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10252945	3L_10252945_SNP [dm3] 3L_10259845_SNP [dm6]	T	G	2.344e^-4	1	INTERGENIC
2L	15749372	2L_15749372_SNP [dm3] 2L_15749372_SNP [dm6]	A	G	2.348e^-4	1	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
2R	18369046	2R_18369046_SNP [dm3] 2R_22481541_SNP [dm6]	G	C	2.359e^-4	1	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15504931	X_15504931_SNP [dm3] X_15610898_SNP [dm6]	A	T	2.362e^-4	1	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4997670	2L_4997670_SNP [dm3] 2L_4997670_SNP [dm6]	G	T	2.366e^-4	1	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	15749466	2L_15749466_SNP [dm3] 2L_15749466_SNP [dm6]	C	T	2.367e^-4	1	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
2R	15422083	2R_15422083_SNP [dm3] 2R_19534578_SNP [dm6]	A	C	2.370e^-4	1	INTRON sm
3R	25635394	3R_25635394_SNP [dm3] 3R_29809672_SNP [dm6]	T	G	2.372e^-4	1	NON_SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8569801	3L_8569801_SNP [dm3] 3L_8576701_SNP [dm6]	T	C	2.372e^-4	1	UPSTREAM CG43078 & 1 other INTERGENIC
3L	10257533	3L_10257533_SNP [dm3] 3L_10264433_SNP [dm6]	C	A	2.383e^-4	1	NON_SYNONYMOUS_CODING can
2R	12823513	2R_12823513_SNP [dm3] 2R_16936008_SNP [dm6]	C	T	2.385e^-4	1	INTRON Pkc53E
3L	10258907	3L_10258907_SNP [dm3] 3L_10265807_SNP [dm6]	T	C	2.389e^-4	1	NON_SYNONYMOUS_CODING can
3L	15957664	3L_15957664_SNP [dm3] 3L_15964564_SNP [dm6]	A	G	2.392e^-4	1	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8504943	2L_8504943_SNP [dm3] 2L_8504943_SNP [dm6]	T	C	2.408e^-4	1	INTRON Dh31
3L	10404676	3L_10404676_SNP [dm3] 3L_10411576_SNP [dm6]	A	G	2.412e^-4	1	UPSTREAM CR44543 DOWNSTREAM CR43990 INTERGENIC
3L	15974106	3L_15974106_SNP [dm3] 3L_15981006_SNP [dm6]	G	T	2.421e^-4	1	INTRON brm & 1 other	TF binding site mE1_TFBS_cad
2R	7462797	2R_7462797_SNP [dm3] 2R_11575292_SNP [dm6]	A	T	2.430e^-4	1	INTERGENIC
3L	15793018	3L_15793018_SNP [dm3] 3L_15799918_SNP [dm6]	A	G	2.434e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9161604	3L_9161604_SNP [dm3] 3L_9168504_SNP [dm6]	T	G	2.464e^-4	1	INTRON Rdl
2R	18601522	2R_18601522_INS [dm3] 2R_22714017_INS [dm6]	T	TT	2.475e^-4	1	SPLICE_SITE_REGION CG30268 INTRON CG30268	TF binding site BDTNP1_TFBS_twi
2R	12870509	2R_12870509_SNP [dm3] 2R_16983004_SNP [dm6]	A	C	2.477e^-4	1	INTRON Cbp53E
2L	15749595	2L_15749595_SNP [dm3] 2L_15749595_SNP [dm6]	A	T	2.478e^-4	1	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
2R	3428630	2R_3428630_DEL [dm3] 2R_7541125_DEL [dm6]	TTT	CA	2.480e^-4	1	INTRON Corin
2L	9447173	2L_9447173_SNP [dm3] 2L_9447173_SNP [dm6]	T	C	2.481e^-4	1	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	12038186	2R_12038186_SNP [dm3] 2R_16150681_SNP [dm6]	T	A	2.489e^-4	1	UTR_5_PRIME lbk UPSTREAM CG10731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18741660	3R_18741660_SNP [dm3] 3R_22915938_SNP [dm6]	C	T	2.494e^-4	1	INTRON klg
3L	20100945	3L_20100945_SNP [dm3] 3L_20107845_SNP [dm6]	T	G	2.496e^-4	1	DOWNSTREAM Ir76b & 1 other INTERGENIC	transposable element FlyBase
3L	2694707	3L_2694707_SNP [dm3] 3L_2694707_SNP [dm6]	G	T	2.497e^-4	1	INTRON Fife
2L	5066313	2L_5066313_SNP [dm3] 2L_5066313_SNP [dm6]	T	A	2.509e^-4	1	INTRON qtc
3L	18648267	3L_18648267_INS [dm3] 3L_18655167_INS [dm6]	T	TT	2.522e^-4	1	INTRON MYPT-75D
3L	10935945	3L_10935945_SNP [dm3] 3L_10942845_SNP [dm6]	T	A	2.565e^-4	1	INTERGENIC
3L	10935960	3L_10935960_SNP [dm3] 3L_10942860_SNP [dm6]	T	C	2.565e^-4	1	INTERGENIC
3R	6511636	3R_6511636_SNP [dm3] 3R_10685914_SNP [dm6]	A	T	2.567e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6511659	3R_6511659_SNP [dm3] 3R_10685937_SNP [dm6]	G	T	2.567e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14519168	X_14519168_SNP [dm3] X_14625135_SNP [dm6]	C	T	2.568e^-4	1	INTRON NetA
3L	10325065	3L_10325065_INS [dm3] 3L_10331965_INS [dm6]	G	GG	2.570e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv
2L	5684723	2L_5684723_DEL [dm3] 2L_5684723_DEL [dm6]	CGC	C	2.580e^-4	1	INTERGENIC
2R	12684497	2R_12684497_SNP [dm3] 2R_16796992_SNP [dm6]	A	G	2.584e^-4	1	UPSTREAM CG15615 INTERGENIC
2R	12810424	2R_12810424_SNP [dm3] 2R_16922919_SNP [dm6]	C	T	2.586e^-4	1	INTERGENIC
2L	9868904	2L_9868904_SNP [dm3] 2L_9868904_SNP [dm6]	A	G	2.588e^-4	1	INTRON nAChRalpha6
2R	17552549	2R_17552549_SNP [dm3] 2R_21665044_SNP [dm6]	T	A	2.590e^-4	1	UTR_5_PRIME CG42363 UTR_3_PRIME CG42362 UPSTREAM CG42364
2R	16580171	2R_16580171_SNP [dm3] 2R_20692666_SNP [dm6]	G	T	2.590e^-4	1	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
3L	11923088	3L_11923088_SNP [dm3] 3L_11929988_SNP [dm6]	A	T	2.593e^-4	1	INTRON CG44837 & 1 other	TF binding site mE1_TFBS_cad
X	2277485	X_2277485_SNP [dm3] X_2383452_SNP [dm6]	G	A	2.608e^-4	1	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1227671	2L_1227671_SNP [dm3] 2L_1227671_SNP [dm6]	C	T	2.609e^-4	1	INTRON CG42329
3L	16493401	3L_16493401_SNP [dm3] 3L_16500301_SNP [dm6]	C	T	2.609e^-4	1	SYNONYMOUS_CODING st INTRON CG43373
X	14855617	X_14855617_SNP [dm3] X_14961584_SNP [dm6]	A	G	2.610e^-4	1	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
2R	12823577	2R_12823577_SNP [dm3] 2R_16936072_SNP [dm6]	C	A	2.613e^-4	1	INTRON Pkc53E
X	6489687	X_6489687_SNP [dm3] X_6595654_SNP [dm6]	T	C	2.614e^-4	1	NON_SYNONYMOUS_CODING Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11331556	2R_11331556_SNP [dm3] 2R_15444051_SNP [dm6]	G	A	2.618e^-4	1	INTRON CG43729
X	13481799	X_13481799_SNP [dm3] X_13587766_SNP [dm6]	G	T	2.632e^-4	1	INTRON Tango13
2L	15046995	2L_15046995_SNP [dm3] 2L_15046995_SNP [dm6]	C	T	2.633e^-4	1	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
2L	1694203	2L_1694203_INS [dm3] 2L_1694203_INS [dm6]	G	GTG	2.642e^-4	1	INTRON chinmo
2L	2638446	2L_2638446_SNP [dm3] 2L_2638446_SNP [dm6]	C	G	2.645e^-4	1	INTERGENIC
2R	8484793	2R_8484793_SNP [dm3] 2R_12597288_SNP [dm6]	C	T	2.646e^-4	1	INTRON Amph
3L	14178172	3L_14178172_SNP [dm3] 3L_14185072_SNP [dm6]	C	T	2.647e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18896224	3R_18896224_SNP [dm3] 3R_23070502_SNP [dm6]	T	C	2.658e^-4	1	DOWNSTREAM CG13830 INTERGENIC
2R	7637570	2R_7637570_SNP [dm3] 2R_11750065_SNP [dm6]	A	T	2.663e^-4	1	INTERGENIC
3L	5334099	3L_5334099_SNP [dm3] 3L_5340999_SNP [dm6]	A	T	2.669e^-4	1	INTERGENIC
2R	16566605	2R_16566605_SNP [dm3] 2R_20679100_SNP [dm6]	T	C	2.678e^-4	1	INTERGENIC
3L	13326306	3L_13326306_SNP [dm3] 3L_13333206_SNP [dm6]	A	C	2.698e^-4	1	INTERGENIC
2R	9170600	2R_9170600_SNP [dm3] 2R_13283095_SNP [dm6]	G	T	2.702e^-4	1	INTRON Dh31-R
2L	17318734	2L_17318734_SNP [dm3] 2L_17318734_SNP [dm6]	T	C	2.704e^-4	1	DOWNSTREAM CR45696 INTERGENIC
3R	27073476	3R_27073476_DEL [dm3] 3R_31247754_DEL [dm6]	GTAGCTGGG	G	2.708e^-4	1	INTRON qless
2L	5417859	2L_5417859_SNP [dm3] 2L_5417859_SNP [dm6]	T	A	2.710e^-4	1	INTERGENIC
2L	3874025	2L_3874025_SNP [dm3] 2L_3874025_SNP [dm6]	T	A	2.711e^-4	1	SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_chinmo
2R	9553698	2R_9553698_SNP [dm3] 2R_13666193_SNP [dm6]	G	A	2.728e^-4	1	SYNONYMOUS_CODING CG13337 INTRON fas
X	10118831	X_10118831_SNP [dm3] X_10224798_SNP [dm6]	C	G	2.731e^-4	1	INTRON CG34408	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12888028	2R_12888028_SNP [dm3] 2R_17000523_SNP [dm6]	A	G	2.740e^-4	1	SYNONYMOUS_CODING ste24a UPSTREAM ste24b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16625734	2R_16625734_SNP [dm3] 2R_20738229_SNP [dm6]	T	C	2.745e^-4	1	INTRON dpr
X	11534543	X_11534543_SNP [dm3] X_11640510_SNP [dm6]	C	A	2.762e^-4	1	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl
2L	10345596	2L_10345596_SNP [dm3] 2L_10345596_SNP [dm6]	T	C	2.772e^-4	1	INTRON CG5022
2R	8937312	2R_8937312_SNP [dm3] 2R_13049807_SNP [dm6]	G	A	2.775e^-4	1	UPSTREAM CG13324 INTERGENIC
3L	5431527	3L_5431527_SNP [dm3] 3L_5438427_SNP [dm6]	C	G	2.777e^-4	1	INTRON CG34391
2R	8484921	2R_8484921_SNP [dm3] 2R_12597416_SNP [dm6]	G	A	2.778e^-4	1	INTRON Amph
3R	18916178	3R_18916178_DEL [dm3] 3R_23090456_DEL [dm6]	TATTCTAGGGACATTACATT...	T	2.780e^-4	1	INTRON CG13830
2R	1148273	2R_1148273_SNP [dm3] 2R_5260768_SNP [dm6]	C	T	2.785e^-4	1	INTRON d4
3R	26615094	3R_26615094_SNP [dm3] 3R_30789372_SNP [dm6]	A	C	2.786e^-4	1	DOWNSTREAM wts & 1 other INTERGENIC
3R	9633902	3R_9633902_SNP [dm3] 3R_13808180_SNP [dm6]	C	T	2.794e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15749405	2L_15749405_SNP [dm3] 2L_15749405_SNP [dm6]	C	T	2.795e^-4	1	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
3R	16137181	3R_16137181_SNP [dm3] 3R_20311459_SNP [dm6]	C	G	2.798e^-4	1	INTRON CG42668
2R	12870566	2R_12870566_SNP [dm3] 2R_16983061_SNP [dm6]	A	T	2.799e^-4	1	INTRON Cbp53E
2R	9544446	2R_9544446_SNP [dm3] 2R_13656941_SNP [dm6]	T	A	2.802e^-4	1	INTRON fas
2R	12699282	2R_12699282_SNP [dm3] 2R_16811777_SNP [dm6]	T	G	2.802e^-4	1	UPSTREAM CR44379 DOWNSTREAM CR44465 INTERGENIC
2L	9875952	2L_9875952_SNP [dm3] 2L_9875952_SNP [dm6]	T	C	2.809e^-4	1	INTRON nAChRalpha6
3L	20100946	3L_20100946_SNP [dm3] 3L_20107846_SNP [dm6]	G	T	2.809e^-4	1	DOWNSTREAM Ir76b & 1 other INTERGENIC	transposable element FlyBase
3L	20100948	3L_20100948_INS [dm3] 3L_20107848_INS [dm6]	T	CAG	2.809e^-4	1	DOWNSTREAM Ir76b & 1 other INTERGENIC	transposable element FlyBase
2L	3698185	2L_3698185_SNP [dm3] 2L_3698185_SNP [dm6]	C	G	2.810e^-4	1	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
3L	15899276	3L_15899276_SNP [dm3] 3L_15906176_SNP [dm6]	C	G	2.831e^-4	1	SYNONYMOUS_CODING sff
2R	2481674	2R_2481674_SNP [dm3] 2R_6594169_SNP [dm6]	T	A	2.837e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	10859913	2L_10859913_SNP [dm3] 2L_10859913_SNP [dm6]	T	C	2.837e^-4	1	SYNONYMOUS_CODING Stam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10110210	2L_10110210_SNP [dm3] 2L_10110210_SNP [dm6]	T	G	2.847e^-4	1	INTRON CG44153 & 1 other
3R	22983569	3R_22983569_SNP [dm3] 3R_27157847_SNP [dm6]	A	C	2.853e^-4	1	UPSTREAM grass DOWNSTREAM Men-b INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9753430	2L_9753430_SNP [dm3] 2L_9753430_SNP [dm6]	G	A	2.859e^-4	1	INTERGENIC
3R	9955085	3R_9955085_SNP [dm3] 3R_14129363_SNP [dm6]	T	A	2.861e^-4	1	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2538166	X_2538166_SNP [dm3] X_2644133_SNP [dm6]	A	T	2.862e^-4	1	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16647464	3R_16647464_SNP [dm3] 3R_20821742_SNP [dm6]	C	A	2.866e^-4	1	UTR_5_PRIME CG17271 UPSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	14261742	2L_14261742_SNP [dm3] 2L_14261742_SNP [dm6]	G	A	2.871e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12893221	3L_12893221_SNP [dm3] 3L_12900121_SNP [dm6]	T	C	2.876e^-4	1	INTERGENIC
2R	7265288	2R_7265288_SNP [dm3] 2R_11377783_SNP [dm6]	C	T	2.888e^-4	1	SYNONYMOUS_CODING Tsp47F DOWNSTREAM CG13203
3R	14130870	3R_14130870_SNP [dm3] 3R_18305148_SNP [dm6]	C	G	2.897e^-4	1	SYNONYMOUS_CODING PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15074805	2R_15074805_SNP [dm3] 2R_19187300_SNP [dm6]	G	C	2.929e^-4	1	INTRON hppy
3R	20717054	3R_20717054_SNP [dm3] 3R_24891332_SNP [dm6]	C	A	2.945e^-4	1	INTRON CG31121
2L	10719689	2L_10719689_DEL [dm3] 2L_10719689_DEL [dm6]	AAAT	A	2.948e^-4	1	INTERGENIC
X	13132490	X_13132490_DEL [dm3] X_13238457_DEL [dm6]	CACCC	C	2.968e^-4	1	INTRON mew	TF binding site BDTNP1_TFBS_dl
2L	4635277	2L_4635277_SNP [dm3] 2L_4635277_SNP [dm6]	A	G	2.973e^-4	1	UPSTREAM CR45452 INTERGENIC
3L	10258902	3L_10258902_SNP [dm3] 3L_10265802_SNP [dm6]	T	A	2.977e^-4	1	SYNONYMOUS_CODING can
X	14483320	X_14483320_SNP [dm3] X_14589287_SNP [dm6]	C	A	2.985e^-4	1	INTRON CG9413
X	9600046	X_9600046_SNP [dm3] X_9706013_SNP [dm6]	A	G	2.999e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	10192068	3L_10192068_SNP [dm3] 3L_10198968_SNP [dm6]	G	T	3.004e^-4	1	INTRON ect
2R	16526272	2R_16526272_SNP [dm3] 2R_20638767_SNP [dm6]	T	A	3.020e^-4	1	DOWNSTREAM CG13436 INTRON rig
3L	9305867	3L_9305867_SNP [dm3] 3L_9312767_SNP [dm6]	T	G	3.022e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10604782	2L_10604782_SNP [dm3] 2L_10604782_SNP [dm6]	G	A	3.026e^-4	1	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
3L	13256619	3L_13256619_INS [dm3] 3L_13263519_INS [dm6]	C	CC	3.032e^-4	1	INTRON caps	enhancer mE1_CBP_Enhancers
2L	1024598	2L_1024598_SNP [dm3] 2L_1024598_SNP [dm6]	T	G	3.047e^-4	1	INTRON IA-2
2R	12870481	2R_12870481_SNP [dm3] 2R_16982976_SNP [dm6]	G	T	3.070e^-4	1	INTRON Cbp53E
2R	11872127	2R_11872127_SNP [dm3] 2R_15984622_SNP [dm6]	A	T	3.086e^-4	1	INTRON Strn-Mlck
2L	15998543	2L_15998543_SNP [dm3] 2L_15998543_SNP [dm6]	T	C	3.087e^-4	1	INTERGENIC
3L	5243604	3L_5243604_SNP [dm3] 3L_5250504_SNP [dm6]	T	C	3.088e^-4	1	INTRON shep
2L	5072800	2L_5072800_SNP [dm3] 2L_5072800_SNP [dm6]	A	G	3.117e^-4	1	UTR_3_PRIME pgant5 DOWNSTREAM RpL37A
2R	18596915	2R_18596915_SNP [dm3] 2R_22709410_SNP [dm6]	C	T	3.119e^-4	1	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275 UPSTREAM CR43735
3L	15878799	3L_15878799_SNP [dm3] 3L_15885699_SNP [dm6]	A	T	3.119e^-4	1	INTRON pHCl EXON CR44050
3R	23450660	3R_23450660_SNP [dm3] 3R_27624938_SNP [dm6]	T	C	3.130e^-4	1	INTRON Tusp & 1 other
2L	2638439	2L_2638439_SNP [dm3] 2L_2638439_SNP [dm6]	T	C	3.146e^-4	1	INTERGENIC
2R	13184324	2R_13184324_SNP [dm3] 2R_17296819_SNP [dm6]	A	G	3.149e^-4	1	INTRON mbl
3R	25369375	3R_25369375_SNP [dm3] 3R_29543653_SNP [dm6]	T	A	3.164e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	7687876	2R_7687876_SNP [dm3] 2R_11800371_SNP [dm6]	G	T	3.169e^-4	1	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5486796	3L_5486796_SNP [dm3] 3L_5493696_SNP [dm6]	G	T	3.174e^-4	1	EXON CR44520
3R	26615310	3R_26615310_SNP [dm3] 3R_30789588_SNP [dm6]	T	C	3.179e^-4	1	DOWNSTREAM wts & 1 other INTERGENIC
3L	17476771	3L_17476771_SNP [dm3] 3L_17483671_SNP [dm6]	A	G	3.182e^-4	1	INTRON CG6333
X	14418888	X_14418888_SNP [dm3] X_14524855_SNP [dm6]	T	G	3.197e^-4	1	INTERGENIC
3R	19261728	3R_19261728_SNP [dm3] 3R_23436006_SNP [dm6]	G	A	3.214e^-4	1	INTRON CG4374
3L	10935936	3L_10935936_SNP [dm3] 3L_10942836_SNP [dm6]	G	A	3.214e^-4	1	INTERGENIC
2R	2481611	2R_2481611_SNP [dm3] 2R_6594106_SNP [dm6]	T	G	3.222e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	1100061	2R_1100061_SNP [dm3] 2R_5212556_SNP [dm6]	A	T	3.225e^-4	1	INTRON Nipped-A
2L	9148697	2L_9148697_SNP [dm3] 2L_9148697_SNP [dm6]	A	T	3.241e^-4	1	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18369069	2R_18369069_SNP [dm3] 2R_22481564_SNP [dm6]	A	C	3.242e^-4	1	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2904939	X_2904939_SNP [dm3] X_3010906_SNP [dm6]	T	C	3.253e^-4	1	INTRON kirre
2R	10427069	2R_10427069_SNP [dm3] 2R_14539564_SNP [dm6]	A	C	3.256e^-4	1	INTRON ttv
3R	15007726	3R_15007726_SNP [dm3] 3R_19182004_SNP [dm6]	C	A	3.269e^-4	1	INTRON CG31475
3L	5946131	3L_5946131_SNP [dm3] 3L_5953031_SNP [dm6]	G	A	3.273e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6396438	3L_6396438_SNP [dm3] 3L_6403338_SNP [dm6]	G	C	3.277e^-4	1	INTRON CG42747
X	13468538	X_13468538_SNP [dm3] X_13574505_SNP [dm6]	T	C	3.281e^-4	1	INTRON Tango13
X	14842821	X_14842821_SNP [dm3] X_14948788_SNP [dm6]	A	C	3.288e^-4	1	INTRON pdgy
3R	17902993	3R_17902993_SNP [dm3] 3R_22077271_SNP [dm6]	C	T	3.293e^-4	1	INTRON how
2R	17691151	2R_17691151_SNP [dm3] 2R_21803646_SNP [dm6]	T	C	3.309e^-4	1	EXON CR9284
3L	10829021	3L_10829021_SNP [dm3] 3L_10835921_SNP [dm6]	A	T	3.311e^-4	1	INTERGENIC
X	14950864	X_14950864_SNP [dm3] X_15056831_SNP [dm6]	G	C	3.317e^-4	1	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3L	14924270	3L_14924270_SNP [dm3] 3L_14931170_SNP [dm6]	G	A	3.318e^-4	1	INTRON DCX-EMAP
3L	3363654	3L_3363654_SNP [dm3] 3L_3363654_SNP [dm6]	C	A	3.324e^-4	1	NON_SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3729868	X_3729868_SNP [dm3] X_3835835_SNP [dm6]	T	C	3.324e^-4	1	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5937616	3L_5937616_SNP [dm3] 3L_5944516_SNP [dm6]	T	C	3.342e^-4	1	INTRON CG33993
2L	6112914	2L_6112914_SNP [dm3] 2L_6112914_SNP [dm6]	T	C	3.343e^-4	1	INTRON stai
X	4359527	X_4359527_SNP [dm3] X_4465494_SNP [dm6]	G	C	3.355e^-4	1	INTRON bi & 1 other
2L	14865403	2L_14865403_SNP [dm3] 2L_14865403_SNP [dm6]	C	A	3.355e^-4	1	INTERGENIC
3L	15654350	3L_15654350_SNP [dm3] 3L_15661250_SNP [dm6]	T	C	3.360e^-4	1	UTR_5_PRIME Eig71Ek UPSTREAM CG43082 & 1 other DOWNSTREAM Eig71Ei
2R	8928543	2R_8928543_SNP [dm3] 2R_13041038_SNP [dm6]	T	C	3.370e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	1099463	2R_1099463_SNP [dm3] 2R_5211958_SNP [dm6]	C	A	3.386e^-4	1	INTRON Nipped-A	transposable element FlyBase
3L	6396442	3L_6396442_SNP [dm3] 3L_6403342_SNP [dm6]	T	C	3.386e^-4	1	INTRON CG42747
2L	2695319	2L_2695319_SNP [dm3] 2L_2695319_SNP [dm6]	A	T	3.395e^-4	1	DOWNSTREAM CG15398 INTRON CG31690
3L	12561417	3L_12561417_SNP [dm3] 3L_12568317_SNP [dm6]	A	G	3.400e^-4	1	INTRON sowah
3L	6288265	3L_6288265_SNP [dm3] 3L_6295165_SNP [dm6]	C	T	3.401e^-4	1	INTERGENIC
X	10809680	X_10809680_SNP [dm3] X_10915647_SNP [dm6]	C	T	3.410e^-4	1	NON_SYNONYMOUS_CODING CG43901 INTRON CG43901	TF binding site mE1_TFBS_chinmo
2R	17747290	2R_17747290_SNP [dm3] 2R_21859785_SNP [dm6]	T	C	3.413e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15046078	3R_15046078_SNP [dm3] 3R_19220356_SNP [dm6]	A	G	3.413e^-4	1	INTRON vib
3L	1788816	3L_1788816_SNP [dm3] 3L_1788816_SNP [dm6]	G	A	3.422e^-4	1	SYNONYMOUS_CODING alpha-Spec DOWNSTREAM dlt	TF binding site mE1_TFBS_cad
2R	8928540	2R_8928540_SNP [dm3] 2R_13041035_SNP [dm6]	C	A	3.446e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	8228098	X_8228098_SNP [dm3] X_8334065_SNP [dm6]	C	T	3.446e^-4	1	INTRON nAChRalpha3	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	9447147	2L_9447147_SNP [dm3] 2L_9447147_SNP [dm6]	A	C	3.447e^-4	1	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	11585078	3L_11585078_SNP [dm3] 3L_11591978_SNP [dm6]	T	C	3.448e^-4	1	UPSTREAM CG33268 DOWNSTREAM CR45672 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14521028	X_14521028_SNP [dm3] X_14626995_SNP [dm6]	T	C	3.457e^-4	1	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20833677	X_20833677_SNP [dm3] X_20962650_SNP [dm6]	T	A	3.457e^-4	1	UTR_3_PRIME Ser6
X	9706757	X_9706757_SNP [dm3] X_9812724_SNP [dm6]	T	G	3.460e^-4	1	INTRON CG32698
2L	13179871	2L_13179871_SNP [dm3] 2L_13179871_SNP [dm6]	G	T	3.475e^-4	1	DOWNSTREAM CG5439 & 1 other INTRON CG5287	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	15499752	3L_15499752_SNP [dm3] 3L_15506652_SNP [dm6]	T	C	3.478e^-4	1	INTRON CG7841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	18708363	2R_18708363_DEL [dm3] 2R_22820858_DEL [dm6]	TT	T	3.502e^-4	1	UPSTREAM CG42284 INTRON CG30271	TF binding site mE1_TFBS_chinmo
3L	1790791	3L_1790791_SNP [dm3] 3L_1790791_SNP [dm6]	G	A	3.506e^-4	1	SYNONYMOUS_CODING dlt INTRON alpha-Spec	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10719619	2L_10719619_SNP [dm3] 2L_10719619_SNP [dm6]	A	G	3.508e^-4	1	INTERGENIC
2L	10719670	2L_10719670_DEL [dm3] 2L_10719670_DEL [dm6]	TT	T	3.508e^-4	1	INTERGENIC
X	19563617	X_19563617_SNP [dm3] X_19669584_SNP [dm6]	C	T	3.512e^-4	1	UPSTREAM Zw INTRON Zw	TF binding site mE1_TFBS_chinmo
3L	10935880	3L_10935880_SNP [dm3] 3L_10942780_SNP [dm6]	A	C	3.515e^-4	1	INTERGENIC
2L	7432008	2L_7432008_SNP [dm3] 2L_7432008_SNP [dm6]	C	T	3.515e^-4	1	INTRON CG5958
3L	13915542	3L_13915542_SNP [dm3] 3L_13922442_SNP [dm6]	A	C	3.516e^-4	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	9571905	2R_9571905_INS [dm3] 2R_13684400_INS [dm6]	A	ATA	3.525e^-4	1	INTRON fas
2R	11815924	2R_11815924_SNP [dm3] 2R_15928419_SNP [dm6]	C	T	3.529e^-4	1	UPSTREAM bdg INTRON bdg
X	13959390	X_13959390_SNP [dm3] X_14065357_SNP [dm6]	C	T	3.530e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13959391	X_13959391_SNP [dm3] X_14065358_SNP [dm6]	A	T	3.530e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14261055	2R_14261055_INS [dm3] 2R_18373550_INS [dm6]	T	TT	3.535e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3914218	3L_3914218_SNP [dm3] 3L_3914218_SNP [dm6]	G	C	3.538e^-4	1	INTRON Eip63F-1
X	13959358	X_13959358_SNP [dm3] X_14065325_SNP [dm6]	A	G	3.539e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26616008	3R_26616008_SNP [dm3] 3R_30790286_SNP [dm6]	G	A	3.548e^-4	1	UTR_3_PRIME wts
2L	13413151	2L_13413151_SNP [dm3] 2L_13413151_SNP [dm6]	A	T	3.549e^-4	1	NON_SYNONYMOUS_CODING CG16848 DOWNSTREAM CG16956	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17903203	3R_17903203_SNP [dm3] 3R_22077481_SNP [dm6]	C	T	3.554e^-4	1	UTR_3_PRIME how
2R	10720062	2R_10720062_SNP [dm3] 2R_14832557_SNP [dm6]	T	A	3.557e^-4	1	UPSTREAM CG10205 INTERGENIC
2R	14787598	2R_14787598_SNP [dm3] 2R_18900093_SNP [dm6]	A	C	3.561e^-4	1	DOWNSTREAM snoRNA:Me28S-U1130 INTRON sano
3L	15321363	3L_15321363_SNP [dm3] 3L_15328263_SNP [dm6]	A	G	3.566e^-4	1	INTERGENIC
2R	15422139	2R_15422139_SNP [dm3] 2R_19534634_SNP [dm6]	T	C	3.572e^-4	1	INTRON sm
X	3163955	X_3163955_SNP [dm3] X_3269922_SNP [dm6]	A	C	3.575e^-4	1	INTRON dnc
3L	17829310	3L_17829310_DEL [dm3] 3L_17836210_DEL [dm6]	TTTTCCGCATGCTAAAATCG...	T	3.599e^-4	1	INTRON Grd
3L	17829337	3L_17829337_SNP [dm3] 3L_17836237_SNP [dm6]	T	A	3.599e^-4	1	INTRON Grd
2R	12870220	2R_12870220_SNP [dm3] 2R_16982715_SNP [dm6]	A	T	3.608e^-4	1	INTRON Cbp53E
2L	6191105	2L_6191105_SNP [dm3] 2L_6191105_SNP [dm6]	T	C	3.610e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	10620774	2R_10620774_SNP [dm3] 2R_14733269_SNP [dm6]	C	T	3.620e^-4	1	INTERGENIC
2R	8499739	2R_8499739_SNP [dm3] 2R_12612234_SNP [dm6]	A	G	3.625e^-4	1	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2R	9022002	2R_9022002_SNP [dm3] 2R_13134497_SNP [dm6]	C	T	3.630e^-4	1	SYNONYMOUS_CODING Cap-G	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	21790512	3L_21790512_SNP [dm3] 3L_21797412_SNP [dm6]	T	A	3.638e^-4	1	INTERGENIC
3R	14309470	3R_14309470_SNP [dm3] 3R_18483748_SNP [dm6]	G	A	3.640e^-4	1	INTRON fru
2L	8610186	2L_8610186_DEL [dm3] 2L_8610186_DEL [dm6]	AA	A	3.640e^-4	1	INTRON Sema-1a
2L	10719624	2L_10719624_SNP [dm3] 2L_10719624_SNP [dm6]	G	A	3.649e^-4	1	INTERGENIC
3L	6396433	3L_6396433_SNP [dm3] 3L_6403333_SNP [dm6]	C	T	3.654e^-4	1	INTRON CG42747
3R	15040943	3R_15040943_SNP [dm3] 3R_19215221_SNP [dm6]	T	C	3.659e^-4	1	SYNONYMOUS_CODING cry DOWNSTREAM vib
2L	4432890	2L_4432890_SNP [dm3] 2L_4432890_SNP [dm6]	G	C	3.661e^-4	1	INTRON CG15431
X	4522355	X_4522355_SNP [dm3] X_4628322_SNP [dm6]	C	G	3.663e^-4	1	NON_SYNONYMOUS_CODING CG12184	TF binding site mE1_TFBS_sens
2R	16527292	2R_16527292_SNP [dm3] 2R_20639787_SNP [dm6]	A	G	3.673e^-4	1	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25192747	3R_25192747_SNP [dm3] 3R_29367025_SNP [dm6]	G	C	3.679e^-4	1	INTERGENIC
3R	25429917	3R_25429917_SNP [dm3] 3R_29604195_SNP [dm6]	T	G	3.689e^-4	1	INTRON alph
X	20825266	X_20825266_SNP [dm3] X_20954239_SNP [dm6]	C	T	3.708e^-4	1	INTERGENIC
2R	17490436	2R_17490436_SNP [dm3] 2R_21602931_SNP [dm6]	T	A	3.718e^-4	1	INTERGENIC
X	5020636	X_5020636_SNP [dm3] X_5126603_SNP [dm6]	A	T	3.731e^-4	1	INTRON rg & 1 other
2R	9553975	2R_9553975_SNP [dm3] 2R_13666470_SNP [dm6]	G	C	3.732e^-4	1	NON_SYNONYMOUS_CODING CG13337 INTRON fas
3L	12381202	3L_12381202_SNP [dm3] 3L_12388102_SNP [dm6]	A	G	3.733e^-4	1	UPSTREAM Ncc69 INTRON Ncc69
3L	10241516	3L_10241516_SNP [dm3] 3L_10248416_SNP [dm6]	C	A	3.734e^-4	1	DOWNSTREAM CR44539 EXON CR44540
X	13469088	X_13469088_SNP [dm3] X_13575055_SNP [dm6]	C	T	3.736e^-4	1	INTRON Tango13
2R	17664116	2R_17664116_SNP [dm3] 2R_21776611_SNP [dm6]	A	G	3.739e^-4	1	INTERGENIC
2R	6882854	2R_6882854_SNP [dm3] 2R_10995349_SNP [dm6]	T	A	3.751e^-4	1	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16294972	2R_16294972_SNP [dm3] 2R_20407467_SNP [dm6]	G	C	3.752e^-4	1	INTERGENIC
3L	14499583	3L_14499583_SNP [dm3] 3L_14506483_SNP [dm6]	C	T	3.761e^-4	1	INTRON bbg
2R	7794738	2R_7794738_DEL [dm3] 2R_11907233_DEL [dm6]	AATCCC	T	3.763e^-4	1	INTRON CG13183
3R	10000013	3R_10000013_SNP [dm3] 3R_14174291_SNP [dm6]	G	T	3.763e^-4	1	UTR_3_PRIME Dop1R1
3R	12147908	3R_12147908_SNP [dm3] 3R_16322186_SNP [dm6]	A	G	3.768e^-4	1	UTR_3_PRIME CG44044 DOWNSTREAM tRNA:F2:89BC & 1 other INTRON Sulf1
X	14485310	X_14485310_DEL [dm3] X_14591277_DEL [dm6]	AA	A	3.776e^-4	1	INTRON CG9413
2R	14769095	2R_14769095_SNP [dm3] 2R_18881590_SNP [dm6]	C	A	3.783e^-4	1	INTRON sano
2R	11476521	2R_11476521_SNP [dm3] 2R_15589016_SNP [dm6]	C	A	3.788e^-4	1	INTERGENIC
3L	17468261	3L_17468261_SNP [dm3] 3L_17475161_SNP [dm6]	A	G	3.799e^-4	1	DOWNSTREAM CG7589 INTRON CG7580	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad
X	12401841	X_12401841_SNP [dm3] X_12507808_SNP [dm6]	A	T	3.801e^-4	1	INTRON CG2556	TF binding site BDTNP1_TFBS_da
2L	1432746	2L_1432746_SNP [dm3] 2L_1432746_SNP [dm6]	G	T	3.810e^-4	1	EXON snRNA:U3:22A
3L	765925	3L_765925_SNP [dm3] 3L_765925_SNP [dm6]	G	C	3.818e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15676774	X_15676774_SNP [dm3] X_15782741_SNP [dm6]	G	A	3.823e^-4	1	SYNONYMOUS_CODING Efhc1.1
2R	14835463	2R_14835463_SNP [dm3] 2R_18947958_SNP [dm6]	T	G	3.829e^-4	1	INTRON sano
3L	19259102	3L_19259102_SNP [dm3] 3L_19266002_SNP [dm6]	A	C	3.829e^-4	1	UPSTREAM CG45081 DOWNSTREAM CG9629 INTRON CG9666 & 1 other
2L	15339967	2L_15339967_DEL [dm3] 2L_15339967_DEL [dm6]	ATAGA	A	3.831e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	23884594	3R_23884594_SNP [dm3] 3R_28058872_SNP [dm6]	G	A	3.851e^-4	1	INTRON CG34362
3L	7604878	3L_7604878_DEL [dm3] 3L_7611778_DEL [dm6]	ACGTTGA	A	3.862e^-4	1	INTRON CG33275
3L	11180875	3L_11180875_SNP [dm3] 3L_11187775_SNP [dm6]	A	T	3.866e^-4	1	INTRON GlcAT-P
3L	16347360	3L_16347360_SNP [dm3] 3L_16354260_SNP [dm6]	G	A	3.867e^-4	1	NON_SYNONYMOUS_CODING Pdh UTR_5_PRIME Pdh DOWNSTREAM CG4933 & 1 other
2L	10891272	2L_10891272_SNP [dm3] 2L_10891272_SNP [dm6]	C	G	3.875e^-4	1	INTERGENIC
2R	12823616	2R_12823616_SNP [dm3] 2R_16936111_SNP [dm6]	C	T	3.883e^-4	1	INTRON Pkc53E
3L	10184714	3L_10184714_SNP [dm3] 3L_10191614_SNP [dm6]	C	T	3.890e^-4	1	SYNONYMOUS_CODING ect
3L	10935879	3L_10935879_SNP [dm3] 3L_10942779_SNP [dm6]	G	A	3.908e^-4	1	INTERGENIC
2L	3408880	2L_3408880_SNP [dm3] 2L_3408880_SNP [dm6]	G	A	3.910e^-4	1	INTRON pgant2
2R	8555268	2R_8555268_SNP [dm3] 2R_12667763_SNP [dm6]	C	T	3.915e^-4	1	INTRON nemy
2R	17691079	2R_17691079_SNP [dm3] 2R_21803574_SNP [dm6]	G	T	3.917e^-4	1	INTRON CR9284
2L	10776337	2L_10776337_SNP [dm3] 2L_10776337_SNP [dm6]	G	T	3.923e^-4	1	INTRON CG31869
3L	18490094	3L_18490094_SNP [dm3] 3L_18496994_SNP [dm6]	G	A	3.929e^-4	1	INTRON AstC-R2	TF binding site BDTNP1_TFBS_twi
3R	2699760	3R_2699760_SNP [dm3] 3R_6874038_SNP [dm6]	C	T	3.941e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	7822697	3L_7822697_SNP [dm3] 3L_7829597_SNP [dm6]	A	G	3.946e^-4	1	INTRON Pdp1
2R	9512213	2R_9512213_SNP [dm3] 2R_13624708_SNP [dm6]	T	G	3.949e^-4	1	INTRON fas
2R	9539900	2R_9539900_SNP [dm3] 2R_13652395_SNP [dm6]	G	A	3.953e^-4	1	INTRON fas	TF binding site BDTNP1_TFBS_twi
2L	7102505	2L_7102505_SNP [dm3] 2L_7102505_SNP [dm6]	G	C	3.958e^-4	1	INTRON Pvf3
2R	14093802	2R_14093802_SNP [dm3] 2R_18206297_SNP [dm6]	A	G	3.962e^-4	1	INTERGENIC
3L	10246982	3L_10246982_SNP [dm3] 3L_10253882_SNP [dm6]	G	A	3.965e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11551479	2L_11551479_SNP [dm3] 2L_11551479_SNP [dm6]	T	A	3.968e^-4	1	INTERGENIC
3L	9724535	3L_9724535_SNP [dm3] 3L_9731435_SNP [dm6]	A	G	3.971e^-4	1	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	17868651	2R_17868651_SNP [dm3] 2R_21981146_SNP [dm6]	G	A	3.975e^-4	1	DOWNSTREAM Gr58a INTERGENIC
3L	16372714	3L_16372714_SNP [dm3] 3L_16379614_SNP [dm6]	A	G	3.989e^-4	1	NON_SYNONYMOUS_CODING CG4753
X	8354444	X_8354444_SNP [dm3] X_8460411_SNP [dm6]	C	T	3.995e^-4	1	INTRON CG15347	transposable element FlyBase
3L	7611382	3L_7611382_SNP [dm3] 3L_7618282_SNP [dm6]	A	G	3.995e^-4	1	INTRON CG33275
2L	369776	2L_369776_SNP [dm3] 2L_369776_SNP [dm6]	A	G	3.995e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6976561	3L_6976561_SNP [dm3] 3L_6983461_SNP [dm6]	G	C	4.002e^-4	1	DOWNSTREAM CG32388 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
2R	6305220	2R_6305220_SNP [dm3] 2R_10417715_SNP [dm6]	G	T	4.007e^-4	1	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	6489512	X_6489512_SNP [dm3] X_6595479_SNP [dm6]	A	G	4.015e^-4	1	SPLICE_SITE_REGION Pat1 INTRON Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15422123	2R_15422123_SNP [dm3] 2R_19534618_SNP [dm6]	C	T	4.015e^-4	1	INTRON sm
3R	17902735	3R_17902735_SNP [dm3] 3R_22077013_SNP [dm6]	C	T	4.016e^-4	1	INTRON how	TF binding site mE1_TFBS_kn
X	3333398	X_3333398_DEL [dm3] X_3439365_DEL [dm6]	ATACA	A	4.020e^-4	1	UTR_5_PRIME CG12535 INTRON CR44999 & 1 other
2L	9626840	2L_9626840_SNP [dm3] 2L_9626840_SNP [dm6]	A	G	4.026e^-4	1	INTERGENIC
X	14520846	X_14520846_SNP [dm3] X_14626813_SNP [dm6]	A	G	4.029e^-4	1	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17468576	3L_17468576_SNP [dm3] 3L_17475476_SNP [dm6]	C	T	4.029e^-4	1	SYNONYMOUS_CODING CG7580 UPSTREAM CG34250 DOWNSTREAM CG7589	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	313403	2L_313403_SNP [dm3] 2L_313403_SNP [dm6]	A	T	4.040e^-4	1	INTRON Plc21C
3R	11496842	3R_11496842_SNP [dm3] 3R_15671120_SNP [dm6]	C	A	4.053e^-4	1	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	4708294	3L_4708294_SNP [dm3] 3L_4708294_SNP [dm6]	G	A	4.057e^-4	1	DOWNSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14859438	X_14859438_SNP [dm3] X_14965405_SNP [dm6]	G	T	4.058e^-4	1	INTRON eag
2L	4896786	2L_4896786_SNP [dm3] 2L_4896786_SNP [dm6]	C	T	4.067e^-4	1	INTRON CG3036
3R	23130294	3R_23130294_SNP [dm3] 3R_27304572_SNP [dm6]	C	T	4.074e^-4	1	INTRON CG3339	TF binding site mE1_TFBS_cad
3L	18545733	3L_18545733_SNP [dm3] 3L_18552633_SNP [dm6]	A	G	4.078e^-4	1	INTERGENIC
2L	10014419	2L_10014419_SNP [dm3] 2L_10014419_SNP [dm6]	T	C	4.097e^-4	1	SYNONYMOUS_CODING CG13131
3R	13946539	3R_13946539_SNP [dm3] 3R_18120817_SNP [dm6]	G	T	4.108e^-4	1	INTRON sr	TF binding site BDTNP1_TFBS_dl
X	14485568	X_14485568_SNP [dm3] X_14591535_SNP [dm6]	G	A	4.113e^-4	1	UTR_5_PRIME CG9413 INTRON CG9413
2R	18933372	2R_18933372_SNP [dm3] 2R_23045849_SNP [dm6]	A	C	4.115e^-4	1	UPSTREAM twi INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	20833643	X_20833643_DEL [dm3] X_20962616_DEL [dm6]	AATAAAA	A	4.115e^-4	1	UTR_3_PRIME Ser6
3R	19069796	3R_19069796_SNP [dm3] 3R_23244074_SNP [dm6]	C	A	4.124e^-4	1	INTRON CG4467
3L	5495986	3L_5495986_SNP [dm3] 3L_5502886_SNP [dm6]	T	A	4.133e^-4	1	DOWNSTREAM CG34342 INTERGENIC
2R	8634444	2R_8634444_SNP [dm3] 2R_12746939_SNP [dm6]	C	A	4.167e^-4	1	INTRON CG42663	TF binding site mE1_TFBS_cad
X	20833683	X_20833683_SNP [dm3] X_20962656_SNP [dm6]	A	C	4.172e^-4	1	UTR_3_PRIME Ser6
3L	16211880	3L_16211880_SNP [dm3] 3L_16218780_SNP [dm6]	G	C	4.176e^-4	1	INTERGENIC
2L	10776381	2L_10776381_SNP [dm3] 2L_10776381_SNP [dm6]	A	G	4.176e^-4	1	INTRON CG31869
2R	2481617	2R_2481617_MNP [dm3] 2R_6594112_MNP [dm6]	CCCCT	AAAAG	4.183e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	7648432	X_7648432_SNP [dm3] X_7754399_SNP [dm6]	C	A	4.188e^-4	1	INTERGENIC
2R	8664862	2R_8664862_SNP [dm3] 2R_12777357_SNP [dm6]	C	T	4.191e^-4	1	EXON CR45266	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	10776391	2L_10776391_SNP [dm3] 2L_10776391_SNP [dm6]	T	A	4.204e^-4	1	INTRON CG31869
2L	10776394	2L_10776394_SNP [dm3] 2L_10776394_SNP [dm6]	C	T	4.204e^-4	1	INTRON CG31869
3R	19745599	3R_19745599_SNP [dm3] 3R_23919877_SNP [dm6]	C	A	4.209e^-4	1	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6595537	2L_6595537_SNP [dm3] 2L_6595537_SNP [dm6]	A	G	4.213e^-4	1	INTRON CG11319
2L	10460136	2L_10460136_SNP [dm3] 2L_10460136_SNP [dm6]	C	T	4.216e^-4	1	NON_SYNONYMOUS_CODING LM408
3L	10245909	3L_10245909_SNP [dm3] 3L_10252809_SNP [dm6]	G	T	4.220e^-4	1	INTERGENIC
2R	5234075	2R_5234075_SNP [dm3] 2R_9346570_SNP [dm6]	T	G	4.225e^-4	1	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
2R	18635390	2R_18635390_SNP [dm3] 2R_22747885_SNP [dm6]	A	G	4.234e^-4	1	INTRON CG42260	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13471400	X_13471400_SNP [dm3] X_13577367_SNP [dm6]	A	C	4.238e^-4	1	UTR_5_PRIME Tango13	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14829359	2R_14829359_SNP [dm3] 2R_18941854_SNP [dm6]	A	G	4.240e^-4	1	INTRON sano
3R	20936787	3R_20936787_SNP [dm3] 3R_25111065_SNP [dm6]	C	A	4.243e^-4	1	SPLICE_SITE_REGION CG13650 INTRON CG13650
3R	797524	3R_797524_SNP [dm3] 3R_4971802_SNP [dm6]	G	A	4.257e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe
2L	4635499	2L_4635499_INS [dm3] 2L_4635499_INS [dm6]	A	AC	4.262e^-4	1	INTERGENIC
3L	6858484	3L_6858484_SNP [dm3] 3L_6865384_SNP [dm6]	C	T	4.270e^-4	1	DOWNSTREAM CR45115 INTERGENIC
2L	682165	2L_682165_SNP [dm3] 2L_682165_SNP [dm6]	G	A	4.271e^-4	1	INTRON ds
2L	10014407	2L_10014407_SNP [dm3] 2L_10014407_SNP [dm6]	A	C	4.308e^-4	1	NON_SYNONYMOUS_CODING CG13131
3R	23558732	3R_23558732_SNP [dm3] 3R_27733010_SNP [dm6]	C	A	4.312e^-4	1	INTERGENIC
2L	9904055	2L_9904055_SNP [dm3] 2L_9904055_SNP [dm6]	G	C	4.327e^-4	1	SYNONYMOUS_CODING CG13124 UPSTREAM Muc30E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4997281	2L_4997281_SNP [dm3] 2L_4997281_SNP [dm6]	A	G	4.335e^-4	1	UTR_5_PRIME Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	10776388	2L_10776388_SNP [dm3] 2L_10776388_SNP [dm6]	T	G	4.350e^-4	1	INTRON CG31869
3L	9143795	3L_9143795_SNP [dm3] 3L_9150695_SNP [dm6]	A	T	4.352e^-4	1	UTR_3_PRIME Rdl
2R	16625723	2R_16625723_SNP [dm3] 2R_20738218_SNP [dm6]	G	A	4.361e^-4	1	INTRON dpr
2R	16526482	2R_16526482_SNP [dm3] 2R_20638977_SNP [dm6]	C	G	4.364e^-4	1	NON_SYNONYMOUS_CODING rig DOWNSTREAM CG13436	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7313820	2R_7313820_SNP [dm3] 2R_11426315_SNP [dm6]	G	C	4.365e^-4	1	INTRON Drip
2R	14767180	2R_14767180_SNP [dm3] 2R_18879675_SNP [dm6]	A	C	4.367e^-4	1	INTRON sano
3L	10245917	3L_10245917_SNP [dm3] 3L_10252817_SNP [dm6]	C	T	4.367e^-4	1	INTERGENIC
2R	18568167	2R_18568167_SNP [dm3] 2R_22680662_SNP [dm6]	A	T	4.370e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	25369382	3R_25369382_SNP [dm3] 3R_29543660_SNP [dm6]	T	A	4.374e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3R	23512652	3R_23512652_DEL [dm3] 3R_27686930_DEL [dm6]	CTTC	C	4.377e^-4	1	SPLICE_SITE_REGION CG31055 INTRON CG12880 & 1 other	TF binding site mE1_TFBS_chinmo
2L	5695175	2L_5695175_SNP [dm3] 2L_5695175_SNP [dm6]	A	T	4.386e^-4	1	INTERGENIC
2R	2481677	2R_2481677_SNP [dm3] 2R_6594172_SNP [dm6]	G	C	4.403e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	14373531	3L_14373531_SNP [dm3] 3L_14380431_SNP [dm6]	A	G	4.427e^-4	1	INTERGENIC
3L	6396814	3L_6396814_SNP [dm3] 3L_6403714_SNP [dm6]	T	A	4.435e^-4	1	INTRON CG42747
3L	10745133	3L_10745133_SNP [dm3] 3L_10752033_SNP [dm6]	G	A	4.443e^-4	1	INTERGENIC
3L	17819926	3L_17819926_SNP [dm3] 3L_17826826_SNP [dm6]	A	G	4.450e^-4	1	INTRON Grd
X	12401844	X_12401844_MNP [dm3] X_12507811_MNP [dm6]	CAG	ATA	4.451e^-4	1	INTRON CG2556	TF binding site BDTNP1_TFBS_da
3L	3862654	3L_3862654_SNP [dm3] 3L_3862654_SNP [dm6]	T	G	4.456e^-4	1	DOWNSTREAM Awh INTERGENIC	TF binding site mE1_TFBS_cnc
2L	10014541	2L_10014541_SNP [dm3] 2L_10014541_SNP [dm6]	A	G	4.461e^-4	1	NON_SYNONYMOUS_CODING CG13131
3L	13165349	3L_13165349_SNP [dm3] 3L_13172249_SNP [dm6]	C	T	4.472e^-4	1	INTERGENIC
3R	18841918	3R_18841918_SNP [dm3] 3R_23016196_SNP [dm6]	T	C	4.473e^-4	1	DOWNSTREAM CG6688 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	16740226	3L_16740226_SNP [dm3] 3L_16747126_SNP [dm6]	G	A	4.474e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16740252	3L_16740252_DEL [dm3] 3L_16747152_DEL [dm6]	GC	T	4.488e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	16896973	3L_16896973_SNP [dm3] 3L_16903873_SNP [dm6]	T	A	4.501e^-4	1	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt
3R	25427702	3R_25427702_SNP [dm3] 3R_29601980_SNP [dm6]	T	A	4.502e^-4	1	INTRON alph
2R	6788078	2R_6788078_SNP [dm3] 2R_10900573_SNP [dm6]	A	G	4.506e^-4	1	INTERGENIC
X	19633772	X_19633772_SNP [dm3] X_19739739_SNP [dm6]	A	G	4.507e^-4	1	UTR_3_PRIME CG14234 DOWNSTREAM CoVIb
2R	15423869	2R_15423869_SNP [dm3] 2R_19536364_SNP [dm6]	A	C	4.508e^-4	1	INTRON sm	TF binding site BDTNP1_TFBS_twi
X	9949268	X_9949268_SNP [dm3] X_10055235_SNP [dm6]	A	T	4.508e^-4	1	SYNONYMOUS_CODING Yp1 UPSTREAM CR45601 DOWNSTREAM CG15312
3L	717716	3L_717716_SNP [dm3] 3L_717716_SNP [dm6]	T	C	4.512e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10776383	2L_10776383_SNP [dm3] 2L_10776383_SNP [dm6]	T	A	4.528e^-4	1	INTRON CG31869
2L	9447069	2L_9447069_SNP [dm3] 2L_9447069_SNP [dm6]	T	A	4.537e^-4	1	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	4949940	2R_4949940_SNP [dm3] 2R_9062435_SNP [dm6]	C	A	4.538e^-4	1	UTR_5_PRIME ana UPSTREAM CG8197	regulatory region REDfly_CRMs
3L	9064838	3L_9064838_SNP [dm3] 3L_9071738_SNP [dm6]	A	C	4.544e^-4	1	SPLICE_SITE_REGION CG4911 INTRON CG4911
3L	5792541	3L_5792541_SNP [dm3] 3L_5799441_SNP [dm6]	T	C	4.545e^-4	1	UTR_3_PRIME S6k
3R	24607568	3R_24607568_SNP [dm3] 3R_28781846_SNP [dm6]	A	G	4.546e^-4	1	INTERGENIC
X	12637516	X_12637516_DEL [dm3] X_12743483_DEL [dm6]	TTCTGTT	T	4.554e^-4	1	UPSTREAM Smr & 1 other DOWNSTREAM CR45623 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24474082	3R_24474082_SNP [dm3] 3R_28648360_SNP [dm6]	C	T	4.555e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3396440	2L_3396440_SNP [dm3] 2L_3396440_SNP [dm6]	G	A	4.578e^-4	1	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5345738	3L_5345738_SNP [dm3] 3L_5352638_SNP [dm6]	A	G	4.581e^-4	1	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13726505	2L_13726505_SNP [dm3] 2L_13726505_SNP [dm6]	G	T	4.583e^-4	1	INTERGENIC
2R	15546348	2R_15546348_SNP [dm3] 2R_19658843_SNP [dm6]	A	T	4.600e^-4	1	DOWNSTREAM CR44504 INTRON CG15125	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7599800	3L_7599800_SNP [dm3] 3L_7606700_SNP [dm6]	A	G	4.602e^-4	1	INTRON CG33275
3L	14498018	3L_14498018_SNP [dm3] 3L_14504918_SNP [dm6]	T	C	4.605e^-4	1	INTRON bbg
2L	1908166	2L_1908166_SNP [dm3] 2L_1908166_SNP [dm6]	G	C	4.608e^-4	1	INTRON CG7337
2L	3084458	2L_3084458_SNP [dm3] 2L_3084458_SNP [dm6]	A	T	4.611e^-4	1	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	20611596	3L_20611596_SNP [dm3] 3L_20618496_SNP [dm6]	C	G	4.611e^-4	1	INTRON knrl
2L	313446	2L_313446_SNP [dm3] 2L_313446_SNP [dm6]	A	G	4.613e^-4	1	INTRON Plc21C
X	9706719	X_9706719_SNP [dm3] X_9812686_SNP [dm6]	G	A	4.614e^-4	1	INTRON CG32698
X	8826108	X_8826108_SNP [dm3] X_8932075_SNP [dm6]	A	G	4.614e^-4	1	INTRON rdgA
X	5235470	X_5235470_SNP [dm3] X_5341437_SNP [dm6]	C	A	4.617e^-4	1	UTR_5_PRIME SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13233680	2L_13233680_SNP [dm3] 2L_13233680_SNP [dm6]	T	A	4.620e^-4	1	DOWNSTREAM CG15479 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9544448	2R_9544448_INS [dm3] 2R_13656943_INS [dm6]	T	TTT	4.621e^-4	1	INTRON fas
2L	10014453	2L_10014453_SNP [dm3] 2L_10014453_SNP [dm6]	G	A	4.623e^-4	1	NON_SYNONYMOUS_CODING CG13131
2L	15886365	2L_15886365_SNP [dm3] 2L_15886365_SNP [dm6]	C	T	4.626e^-4	1	INTERGENIC
2L	13153556	2L_13153556_SNP [dm3] 2L_13153556_SNP [dm6]	T	G	4.635e^-4	1	INTERGENIC
3R	14140329	3R_14140329_SNP [dm3] 3R_18314607_SNP [dm6]	G	C	4.642e^-4	1	UPSTREAM PKD INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	3036781	3R_3036781_SNP [dm3] 3R_7211059_SNP [dm6]	A	T	4.656e^-4	1	INTERGENIC
3L	7611384	3L_7611384_SNP [dm3] 3L_7618284_SNP [dm6]	G	A	4.661e^-4	1	INTRON CG33275
X	10903527	X_10903527_SNP [dm3] X_11009494_SNP [dm6]	A	C	4.661e^-4	1	INTRON CG42339
3L	1135448	3L_1135448_DEL [dm3] 3L_1135448_DEL [dm6]	GGTTTATATTACAAG...	G	4.661e^-4	1	INTERGENIC
2L	4422757	2L_4422757_SNP [dm3] 2L_4422757_SNP [dm6]	T	C	4.671e^-4	1	INTRON CG15431
X	9998836	X_9998836_SNP [dm3] X_10104803_SNP [dm6]	A	T	4.672e^-4	1	INTRON RhoU
2L	3084461	2L_3084461_SNP [dm3] 2L_3084461_SNP [dm6]	A	G	4.680e^-4	1	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	7112914	2L_7112914_SNP [dm3] 2L_7112914_SNP [dm6]	C	T	4.688e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_twi
2L	10014521	2L_10014521_SNP [dm3] 2L_10014521_SNP [dm6]	A	G	4.690e^-4	1	SYNONYMOUS_CODING CG13131
3L	11186673	3L_11186673_SNP [dm3] 3L_11193573_SNP [dm6]	C	T	4.697e^-4	1	INTRON GlcAT-P
X	7941182	X_7941182_SNP [dm3] X_8047149_SNP [dm6]	T	A	4.703e^-4	1	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	1081533	2R_1081533_DEL [dm3] 2R_5194028_DEL [dm6]	GT	G	4.707e^-4	1	INTRON Nipped-A	transposable element FlyBase
X	20574323	X_20574323_SNP [dm3] X_20703296_SNP [dm6]	G	A	4.707e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	5578266	2L_5578266_SNP [dm3] 2L_5578266_SNP [dm6]	G	C	4.708e^-4	1	INTERGENIC
2L	1277417	2L_1277417_SNP [dm3] 2L_1277417_SNP [dm6]	G	A	4.710e^-4	1	INTRON robo3
2L	10442913	2L_10442913_SNP [dm3] 2L_10442913_SNP [dm6]	C	T	4.711e^-4	1	UPSTREAM CR45375 INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26615344	3R_26615344_SNP [dm3] 3R_30789622_SNP [dm6]	C	T	4.733e^-4	1	DOWNSTREAM wts & 1 other INTERGENIC
3R	23130271	3R_23130271_SNP [dm3] 3R_27304549_SNP [dm6]	T	A	4.744e^-4	1	INTRON CG3339
2R	14770128	2R_14770128_SNP [dm3] 2R_18882623_SNP [dm6]	A	C	4.746e^-4	1	INTRON sano
2L	11701279	2L_11701279_SNP [dm3] 2L_11701279_SNP [dm6]	C	A	4.751e^-4	1	INTERGENIC
2L	2692128	2L_2692128_SNP [dm3] 2L_2692128_SNP [dm6]	T	C	4.751e^-4	1	INTRON CG31690
2L	6974016	2L_6974016_SNP [dm3] 2L_6974016_SNP [dm6]	A	G	4.754e^-4	1	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	8435407	X_8435407_SNP [dm3] X_8541374_SNP [dm6]	T	A	4.779e^-4	1	INTRON Nrg
3L	15944366	3L_15944366_SNP [dm3] 3L_15951266_SNP [dm6]	A	G	4.781e^-4	1	INTRON Pka-C3
3R	17902736	3R_17902736_SNP [dm3] 3R_22077014_SNP [dm6]	A	T	4.789e^-4	1	INTRON how	TF binding site mE1_TFBS_kn
2L	5772809	2L_5772809_SNP [dm3] 2L_5772809_SNP [dm6]	T	C	4.789e^-4	1	UPSTREAM CG9171 INTRON CG9171
3R	25276336	3R_25276336_SNP [dm3] 3R_29450614_SNP [dm6]	T	G	4.797e^-4	1	INTRON Ptp99A
2L	16712560	2L_16712560_SNP [dm3] 2L_16712560_SNP [dm6]	A	T	4.802e^-4	1	INTRON CG31808
3L	12353994	3L_12353994_SNP [dm3] 3L_12360894_SNP [dm6]	C	T	4.805e^-4	1	INTERGENIC
2L	12557951	2L_12557951_SNP [dm3] 2L_12557951_SNP [dm6]	G	A	4.812e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9011590	3L_9011590_INS [dm3] 3L_9018490_INS [dm6]	C	CGTGATTACATAC...	4.819e^-4	1	INTRON Doc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	5959115	3L_5959115_SNP [dm3] 3L_5966015_SNP [dm6]	C	A	4.840e^-4	1	INTERGENIC
3R	14309556	3R_14309556_SNP [dm3] 3R_18483834_SNP [dm6]	A	G	4.847e^-4	1	INTRON fru
3L	15754570	3L_15754570_DEL [dm3] 3L_15761470_DEL [dm6]	ACA	A	4.853e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6112911	2L_6112911_SNP [dm3] 2L_6112911_SNP [dm6]	G	A	4.856e^-4	1	INTRON stai
2L	20297305	2L_20297305_SNP [dm3] 2L_20297305_SNP [dm6]	A	C	4.863e^-4	1	UPSTREAM CR43414 INTERGENIC
2L	10459715	2L_10459715_SNP [dm3] 2L_10459715_SNP [dm6]	C	A	4.884e^-4	1	SYNONYMOUS_CODING LM408 INTRON LM408
X	14642142	X_14642142_SNP [dm3] X_14748109_SNP [dm6]	T	C	4.886e^-4	1	INTRON NetB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	17912327	3R_17912327_SNP [dm3] 3R_22086605_SNP [dm6]	C	T	4.888e^-4	1	UPSTREAM CG5791 & 1 other INTRON CG5778
X	4424010	X_4424010_SNP [dm3] X_4529977_SNP [dm6]	C	T	4.890e^-4	1	UPSTREAM CG3556 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	17214028	2L_17214028_SNP [dm3] 2L_17214028_SNP [dm6]	C	T	4.893e^-4	1	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9706787	X_9706787_SNP [dm3] X_9812754_SNP [dm6]	A	G	4.894e^-4	1	INTRON CG32698
X	15302971	X_15302971_SNP [dm3] X_15408938_SNP [dm6]	A	C	4.897e^-4	1	INTRON Cngl
2R	9715480	2R_9715480_SNP [dm3] 2R_13827975_SNP [dm6]	A	T	4.910e^-4	1	INTRON CG6329	TF binding site BDTNP1_TFBS_dl
2R	14828699	2R_14828699_SNP [dm3] 2R_18941194_SNP [dm6]	A	C	4.925e^-4	1	INTRON sano
3L	16740257	3L_16740257_DEL [dm3] 3L_16747157_DEL [dm6]	AA	T	4.929e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3084460	2L_3084460_SNP [dm3] 2L_3084460_SNP [dm6]	A	G	4.941e^-4	1	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	740738	3L_740738_SNP [dm3] 3L_740738_SNP [dm6]	G	A	4.966e^-4	1	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3R	19563053	3R_19563053_DEL [dm3] 3R_23737331_DEL [dm6]	AA	A	4.969e^-4	1	INTRON Hmgcr
2L	9844319	2L_9844319_SNP [dm3] 2L_9844319_SNP [dm6]	C	T	4.978e^-4	1	INTRON nAChRalpha6
3L	10247237	3L_10247237_SNP [dm3] 3L_10254137_SNP [dm6]	T	A	4.981e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7484500	X_7484500_SNP [dm3] X_7590467_SNP [dm6]	G	C	4.994e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	2481649	2R_2481649_SNP [dm3] 2R_6594144_SNP [dm6]	C	A	4.994e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	2481651	2R_2481651_SNP [dm3] 2R_6594146_SNP [dm6]	C	T	4.994e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	2481666	2R_2481666_SNP [dm3] 2R_6594161_SNP [dm6]	A	G	4.994e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	2481668	2R_2481668_SNP [dm3] 2R_6594163_SNP [dm6]	T	A	4.994e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	2481672	2R_2481672_SNP [dm3] 2R_6594167_SNP [dm6]	A	T	4.994e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	23130274	3R_23130274_SNP [dm3] 3R_27304552_SNP [dm6]	T	G	4.995e^-4	1	INTRON CG3339
2L	10699807	2L_10699807_SNP [dm3] 2L_10699807_SNP [dm6]	G	A	5.003e^-4	1	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad
3R	21311750	3R_21311750_SNP [dm3] 3R_25486028_SNP [dm6]	C	G	5.019e^-4	1	UTR_3_PRIME Dhap-at DOWNSTREAM CG42488 & 1 other
3R	21683761	3R_21683761_SNP [dm3] 3R_25858039_SNP [dm6]	C	T	5.031e^-4	1	INTRON CG5890
2L	9531481	2L_9531481_DEL [dm3] 2L_9531481_DEL [dm6]	CAACTC	G	5.032e^-4	1	INTRON Oatp30B
3L	12922814	3L_12922814_SNP [dm3] 3L_12929714_SNP [dm6]	G	T	5.042e^-4	1	INTERGENIC
2R	16317772	2R_16317772_INS [dm3] 2R_20430267_INS [dm6]	T	TT	5.071e^-4	1	INTRON CG12484
X	14483388	X_14483388_SNP [dm3] X_14589355_SNP [dm6]	T	G	5.073e^-4	1	INTRON CG9413
3L	12561413	3L_12561413_SNP [dm3] 3L_12568313_SNP [dm6]	A	T	5.083e^-4	1	INTRON sowah
3R	16647103	3R_16647103_SNP [dm3] 3R_20821381_SNP [dm6]	C	A	5.099e^-4	1	UPSTREAM RpS20 INTRON CG17271	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	10247227	3L_10247227_SNP [dm3] 3L_10254127_SNP [dm6]	G	T	5.100e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8842467	X_8842467_SNP [dm3] X_8948434_SNP [dm6]	G	A	5.104e^-4	1	INTRON rdgA
3R	26615086	3R_26615086_SNP [dm3] 3R_30789364_SNP [dm6]	A	C	5.124e^-4	1	DOWNSTREAM wts & 1 other INTERGENIC
3L	16257017	3L_16257017_SNP [dm3] 3L_16263917_SNP [dm6]	A	C	5.124e^-4	1	NON_SYNONYMOUS_CODING CG13070 DOWNSTREAM CG13071 & 1 other
2R	11996358	2R_11996358_SNP [dm3] 2R_16108853_SNP [dm6]	G	A	5.131e^-4	1	SYNONYMOUS_CODING Ric	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8498276	2R_8498276_SNP [dm3] 2R_12610771_SNP [dm6]	A	G	5.136e^-4	1	INTRON Amph	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16740230	3L_16740230_DEL [dm3] 3L_16747130_DEL [dm6]	ATAGT	A	5.141e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14642125	X_14642125_SNP [dm3] X_14748092_SNP [dm6]	C	A	5.157e^-4	1	INTRON NetB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	16740260	3L_16740260_SNP [dm3] 3L_16747160_SNP [dm6]	A	T	5.169e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18577550	2L_18577550_SNP [dm3] 2L_18577550_SNP [dm6]	G	A	5.169e^-4	1	INTRON Pde11
2R	7284725	2R_7284725_SNP [dm3] 2R_11397220_SNP [dm6]	G	A	5.176e^-4	1	START_GAINED sprt UTR_5_PRIME sprt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7401076	3L_7401076_SNP [dm3] 3L_7407976_SNP [dm6]	T	A	5.180e^-4	1	DOWNSTREAM CR44525 INTERGENIC
2R	13285679	2R_13285679_SNP [dm3] 2R_17398174_SNP [dm6]	C	T	5.201e^-4	1	INTRON Sip1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12865793	2R_12865793_SNP [dm3] 2R_16978288_SNP [dm6]	A	C	5.203e^-4	1	INTRON Cbp53E
3R	26615302	3R_26615302_SNP [dm3] 3R_30789580_SNP [dm6]	T	C	5.219e^-4	1	DOWNSTREAM wts & 1 other INTERGENIC
3R	16647621	3R_16647621_SNP [dm3] 3R_20821899_SNP [dm6]	C	A	5.238e^-4	1	UPSTREAM RpS20 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
X	8764365	X_8764365_SNP [dm3] X_8870332_SNP [dm6]	A	T	5.242e^-4	1	SYNONYMOUS_CODING CG12075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	14788103	X_14788103_SNP [dm3] X_14894070_SNP [dm6]	G	T	5.244e^-4	1	INTRON Flo2 & 1 other
3R	23516107	3R_23516107_SNP [dm3] 3R_27690385_SNP [dm6]	T	C	5.248e^-4	1	INTRON CG12880	TF binding site mE1_TFBS_chinmo
2L	14449655	2L_14449655_SNP [dm3] 2L_14449655_SNP [dm6]	C	T	5.250e^-4	1	UPSTREAM CR45726 DOWNSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	727460	3L_727460_SNP [dm3] 3L_727460_SNP [dm6]	A	C	5.256e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_sens
3L	7840477	3L_7840477_SNP [dm3] 3L_7847377_SNP [dm6]	T	C	5.260e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
2R	14278672	2R_14278672_SNP [dm3] 2R_18391167_SNP [dm6]	C	A	5.261e^-4	1	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
2R	20406918	2R_20406918_SNP [dm3] 2R_24519395_SNP [dm6]	C	A	5.269e^-4	1	UPSTREAM Ir60d DOWNSTREAM Ir60c INTERGENIC	TF binding site mE1_TFBS_cad
2R	14629401	2R_14629401_SNP [dm3] 2R_18741896_SNP [dm6]	C	A	5.272e^-4	1	UPSTREAM CR30121 DOWNSTREAM CG18609 INTRON Hs3st-A
3R	13115952	3R_13115952_SNP [dm3] 3R_17290230_SNP [dm6]	A	C	5.275e^-4	1	INTERGENIC
2R	6305228	2R_6305228_SNP [dm3] 2R_10417723_SNP [dm6]	T	C	5.278e^-4	1	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	20297306	2L_20297306_SNP [dm3] 2L_20297306_SNP [dm6]	T	G	5.281e^-4	1	UPSTREAM CR43414 INTERGENIC
X	4103549	X_4103549_SNP [dm3] X_4209516_SNP [dm6]	A	G	5.284e^-4	1	INTERGENIC
3L	16682811	3L_16682811_SNP [dm3] 3L_16689711_SNP [dm6]	A	G	5.287e^-4	1	INTRON Lasp & 2 others EXON CR45179
X	8519885	X_8519885_INS [dm3] X_8625852_INS [dm6]	G	GCAGCAG	5.302e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	1081532	2R_1081532_SNP [dm3] 2R_5194027_SNP [dm6]	T	A	5.311e^-4	1	INTRON Nipped-A	transposable element FlyBase
3L	2707943	3L_2707943_INS [dm3] 3L_2707943_INS [dm6]	C	CAT	5.316e^-4	1	INTRON Fife
3R	8242525	3R_8242525_SNP [dm3] 3R_12416803_SNP [dm6]	C	T	5.317e^-4	1	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16045994	3R_16045994_SNP [dm3] 3R_20220272_SNP [dm6]	A	C	5.319e^-4	1	INTRON Nlg4	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	11923469	3L_11923469_SNP [dm3] 3L_11930369_SNP [dm6]	A	G	5.328e^-4	1	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12181138	2L_12181138_SNP [dm3] 2L_12181138_SNP [dm6]	G	T	5.330e^-4	1	INTRON aret
2R	15422098	2R_15422098_SNP [dm3] 2R_19534593_SNP [dm6]	G	T	5.333e^-4	1	INTRON sm
2L	13726506	2L_13726506_SNP [dm3] 2L_13726506_SNP [dm6]	G	T	5.333e^-4	1	INTERGENIC
3L	7822678	3L_7822678_SNP [dm3] 3L_7829578_SNP [dm6]	G	A	5.339e^-4	1	INTRON Pdp1
3L	3304078	3L_3304078_SNP [dm3] 3L_3304078_SNP [dm6]	T	A	5.341e^-4	1	UTR_5_PRIME ZnT63C UPSTREAM CG14968 INTRON ZnT63C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	21902451	3L_21902451_SNP [dm3] 3L_21909351_SNP [dm6]	G	A	5.346e^-4	1	INTRON mub
2R	15546367	2R_15546367_SNP [dm3] 2R_19658862_SNP [dm6]	C	T	5.348e^-4	1	DOWNSTREAM CR44504 INTRON CG15125	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	4401366	2R_4401366_SNP [dm3] 2R_8513861_SNP [dm6]	A	G	5.352e^-4	1	INTRON mtt
3R	19205601	3R_19205601_SNP [dm3] 3R_23379879_SNP [dm6]	T	C	5.352e^-4	1	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17943165	3R_17943165_SNP [dm3] 3R_22117443_SNP [dm6]	A	C	5.358e^-4	1	UPSTREAM Ir94b DOWNSTREAM Ir94c INTERGENIC
2L	15749491	2L_15749491_SNP [dm3] 2L_15749491_SNP [dm6]	C	T	5.358e^-4	1	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
3L	11171129	3L_11171129_SNP [dm3] 3L_11178029_SNP [dm6]	A	C	5.366e^-4	1	UTR_3_PRIME GlcAT-P
3R	24474071	3R_24474071_SNP [dm3] 3R_28648349_SNP [dm6]	A	G	5.368e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10808001	3L_10808001_DEL [dm3] 3L_10814901_DEL [dm6]	GCG	G	5.371e^-4	1	UTR_5_PRIME CG42831
2R	20200721	2R_20200721_SNP [dm3] 2R_24313198_SNP [dm6]	A	C	5.376e^-4	1	DOWNSTREAM betaTub60D INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9650605	2L_9650605_SNP [dm3] 2L_9650605_SNP [dm6]	C	T	5.377e^-4	1	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18595084	2R_18595084_SNP [dm3] 2R_22707579_SNP [dm6]	T	C	5.379e^-4	1	SYNONYMOUS_CODING Obp58d UPSTREAM Obp58c & 1 other DOWNSTREAM CR43735
2R	2798227	2R_2798227_SNP [dm3] 2R_6910722_SNP [dm6]	G	A	5.394e^-4	1	INTRON CG30158
2L	9621266	2L_9621266_SNP [dm3] 2L_9621266_SNP [dm6]	C	T	5.397e^-4	1	SYNONYMOUS_CODING GlcAT-S
2L	4635484	2L_4635484_SNP [dm3] 2L_4635484_SNP [dm6]	G	A	5.399e^-4	1	INTERGENIC
2L	13827721	2L_13827721_SNP [dm3] 2L_13827721_SNP [dm6]	A	C	5.404e^-4	1	UTR_5_PRIME tam DOWNSTREAM Arpc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3303026	3L_3303026_SNP [dm3] 3L_3303026_SNP [dm6]	G	A	5.407e^-4	1	UPSTREAM CG14968 & 1 other INTRON CG14968	TF binding site BDTNP1_TFBS_dl
3R	24607383	3R_24607383_SNP [dm3] 3R_28781661_SNP [dm6]	A	G	5.409e^-4	1	INTERGENIC
2R	9109903	2R_9109903_SNP [dm3] 2R_13222398_SNP [dm6]	T	C	5.411e^-4	1	UTR_5_PRIME Fsn UPSTREAM Dp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	14645120	2R_14645120_SNP [dm3] 2R_18757615_SNP [dm6]	G	A	5.415e^-4	1	SPLICE_SITE_REGION Jabba DOWNSTREAM Jabba & 1 other INTRON Jabba
3R	25429001	3R_25429001_SNP [dm3] 3R_29603279_SNP [dm6]	C	A	5.415e^-4	1	INTRON alph
2R	7637571	2R_7637571_SNP [dm3] 2R_11750066_SNP [dm6]	C	T	5.420e^-4	1	INTERGENIC
2L	15747209	2L_15747209_SNP [dm3] 2L_15747209_SNP [dm6]	T	A	5.423e^-4	1	UPSTREAM CycE & 1 other DOWNSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14573417	2L_14573417_SNP [dm3] 2L_14573417_SNP [dm6]	T	A	5.429e^-4	1	INTERGENIC
2R	13184459	2R_13184459_SNP [dm3] 2R_17296954_SNP [dm6]	G	C	5.437e^-4	1	INTRON mbl
2R	14085662	2R_14085662_SNP [dm3] 2R_18198157_SNP [dm6]	C	T	5.450e^-4	1	INTERGENIC
2L	264124	2L_264124_SNP [dm3] 2L_264124_SNP [dm6]	C	G	5.459e^-4	1	NON_SYNONYMOUS_CODING CG17075 INTRON CG3645	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5152394	X_5152394_INS [dm3] X_5258361_INS [dm6]	A	AG	5.465e^-4	1	INTERGENIC
2L	8362644	2L_8362644_SNP [dm3] 2L_8362644_SNP [dm6]	T	C	5.474e^-4	1	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	23313224	3R_23313224_SNP [dm3] 3R_27487502_SNP [dm6]	T	C	5.476e^-4	1	UPSTREAM Gr98a INTERGENIC
3L	15974129	3L_15974129_SNP [dm3] 3L_15981029_SNP [dm6]	A	C	5.504e^-4	1	INTRON brm & 1 other	TF binding site mE1_TFBS_cad
3R	23558539	3R_23558539_SNP [dm3] 3R_27732817_SNP [dm6]	C	T	5.516e^-4	1	INTERGENIC
X	2503207	X_2503207_INS [dm3] X_2609174_INS [dm6]	A	AA	5.517e^-4	1	UPSTREAM Bzd DOWNSTREAM CG8636 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
X	2539611	X_2539611_SNP [dm3] X_2645578_SNP [dm6]	G	T	5.524e^-4	1	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	5210508	2R_5210508_INS [dm3] 2R_9323003_INS [dm6]	T	TGGAT	5.528e^-4	1	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7112918	2L_7112918_SNP [dm3] 2L_7112918_SNP [dm6]	A	G	5.537e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_twi
3L	12045122	3L_12045122_SNP [dm3] 3L_12052022_SNP [dm6]	T	G	5.538e^-4	1	INTRON rols
2R	12822809	2R_12822809_SNP [dm3] 2R_16935304_SNP [dm6]	G	A	5.543e^-4	1	INTRON Pkc53E
2L	8323969	2L_8323969_SNP [dm3] 2L_8323969_SNP [dm6]	A	G	5.553e^-4	1	INTRON CG7781
2L	9904769	2L_9904769_SNP [dm3] 2L_9904769_SNP [dm6]	G	A	5.556e^-4	1	INTRON CG13124	TF binding site mE1_TFBS_cad
2L	1024532	2L_1024532_SNP [dm3] 2L_1024532_SNP [dm6]	A	G	5.567e^-4	1	INTRON IA-2
3L	10325116	3L_10325116_SNP [dm3] 3L_10332016_SNP [dm6]	G	A	5.571e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv
3L	13915536	3L_13915536_SNP [dm3] 3L_13922436_SNP [dm6]	G	T	5.571e^-4	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	13915547	3L_13915547_SNP [dm3] 3L_13922447_SNP [dm6]	G	A	5.571e^-4	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	3265067	2L_3265067_SNP [dm3] 2L_3265067_SNP [dm6]	C	T	5.573e^-4	1	EXON CR45706
2R	2481669	2R_2481669_SNP [dm3] 2R_6594164_SNP [dm6]	A	G	5.577e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	18924727	3R_18924727_SNP [dm3] 3R_23099005_SNP [dm6]	A	G	5.591e^-4	1	SYNONYMOUS_CODING CG6733 UPSTREAM CG6738 INTRON CG13830
3L	7549854	3L_7549854_SNP [dm3] 3L_7556754_SNP [dm6]	T	G	5.601e^-4	1	NON_SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_sens
X	3265573	X_3265573_SNP [dm3] X_3371540_SNP [dm6]	A	C	5.602e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14419019	X_14419019_SNP [dm3] X_14524986_SNP [dm6]	A	T	5.611e^-4	1	INTERGENIC
2L	2334145	2L_2334145_SNP [dm3] 2L_2334145_SNP [dm6]	T	A	5.618e^-4	1	INTRON CG9967 & 1 other
2L	6539855	2L_6539855_SNP [dm3] 2L_6539855_SNP [dm6]	T	C	5.619e^-4	1	INTRON eya
2R	13184445	2R_13184445_SNP [dm3] 2R_17296940_SNP [dm6]	T	G	5.628e^-4	1	INTRON mbl
3R	23200471	3R_23200471_SNP [dm3] 3R_27374749_SNP [dm6]	G	A	5.630e^-4	1	DOWNSTREAM side INTERGENIC
2L	9213383	2L_9213383_SNP [dm3] 2L_9213383_SNP [dm6]	A	T	5.645e^-4	1	INTRON tai
3R	26615087	3R_26615087_SNP [dm3] 3R_30789365_SNP [dm6]	A	G	5.647e^-4	1	DOWNSTREAM wts & 1 other INTERGENIC
2R	14228496	2R_14228496_SNP [dm3] 2R_18340991_SNP [dm6]	T	G	5.649e^-4	1	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14172510	2R_14172510_SNP [dm3] 2R_18285005_SNP [dm6]	T	A	5.654e^-4	1	DOWNSTREAM sbb INTRON sbb
3L	421681	3L_421681_SNP [dm3] 3L_421681_SNP [dm6]	C	T	5.659e^-4	1	INTERGENIC
2L	5417843	2L_5417843_SNP [dm3] 2L_5417843_SNP [dm6]	T	C	5.664e^-4	1	INTERGENIC
2L	8068191	2L_8068191_SNP [dm3] 2L_8068191_SNP [dm6]	T	G	5.679e^-4	1	INTRON poe
3R	8271986	3R_8271986_SNP [dm3] 3R_12446264_SNP [dm6]	A	G	5.679e^-4	1	SYNONYMOUS_CODING Desat1
2L	4635487	2L_4635487_SNP [dm3] 2L_4635487_SNP [dm6]	A	G	5.688e^-4	1	INTERGENIC
2L	10459712	2L_10459712_SNP [dm3] 2L_10459712_SNP [dm6]	G	T	5.691e^-4	1	SYNONYMOUS_CODING LM408 INTRON LM408
3R	17786729	3R_17786729_SNP [dm3] 3R_21961007_SNP [dm6]	T	C	5.717e^-4	1	INTRON Eip93F
3R	24084347	3R_24084347_SNP [dm3] 3R_28258625_SNP [dm6]	G	A	5.725e^-4	1	INTERGENIC
2R	18250399	2R_18250399_SNP [dm3] 2R_22362894_SNP [dm6]	A	T	5.725e^-4	1	INTRON Liprin-gamma
3L	14161750	3L_14161750_SNP [dm3] 3L_14168650_SNP [dm6]	T	C	5.736e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	18749949	X_18749949_SNP [dm3] X_18855916_SNP [dm6]	G	A	5.736e^-4	1	UTR_3_PRIME CG7322 DOWNSTREAM CG7322 & 1 other
2L	11504553	2L_11504553_SNP [dm3] 2L_11504553_SNP [dm6]	C	A	5.737e^-4	1	INTRON spz4
3L	902143	3L_902143_SNP [dm3] 3L_902143_SNP [dm6]	A	G	5.743e^-4	1	UPSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6396908	3L_6396908_SNP [dm3] 3L_6403808_SNP [dm6]	T	A	5.752e^-4	1	INTRON CG42747
2L	6166517	2L_6166517_SNP [dm3] 2L_6166517_SNP [dm6]	A	T	5.770e^-4	1	INTERGENIC
2R	16526187	2R_16526187_SNP [dm3] 2R_20638682_SNP [dm6]	G	A	5.778e^-4	1	SYNONYMOUS_CODING rig DOWNSTREAM CG13436
2L	8078176	2L_8078176_SNP [dm3] 2L_8078176_SNP [dm6]	A	G	5.791e^-4	1	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
2L	313845	2L_313845_SNP [dm3] 2L_313845_SNP [dm6]	C	T	5.804e^-4	1	INTRON Plc21C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2647070	2L_2647070_SNP [dm3] 2L_2647070_SNP [dm6]	A	G	5.808e^-4	1	SYNONYMOUS_CODING CG9962 UPSTREAM CG43851 DOWNSTREAM CR43852	TF binding site mE1_TFBS_chinmo
X	18995387	X_18995387_SNP [dm3] X_19101354_SNP [dm6]	T	A	5.814e^-4	1	INTERGENIC
3L	12381146	3L_12381146_SNP [dm3] 3L_12388046_SNP [dm6]	G	C	5.833e^-4	1	UPSTREAM Ncc69 INTRON Ncc69
3L	12663042	3L_12663042_SNP [dm3] 3L_12669942_SNP [dm6]	A	C	5.838e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12253129	2R_12253129_SNP [dm3] 2R_16365624_SNP [dm6]	C	G	5.849e^-4	1	UTR_5_PRIME CG15711	TF binding site BDTNP1_TFBS_twi
3L	5332766	3L_5332766_SNP [dm3] 3L_5339666_SNP [dm6]	A	G	5.853e^-4	1	INTERGENIC
3R	19233693	3R_19233693_SNP [dm3] 3R_23407971_SNP [dm6]	G	C	5.866e^-4	1	DOWNSTREAM Ir94e & 1 other INTERGENIC
3R	22192672	3R_22192672_SNP [dm3] 3R_26366950_SNP [dm6]	A	T	5.867e^-4	1	INTERGENIC
3R	19347802	3R_19347802_SNP [dm3] 3R_23522080_SNP [dm6]	T	C	5.867e^-4	1	UPSTREAM CG10177 DOWNSTREAM CG10175 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc
3R	7691583	3R_7691583_SNP [dm3] 3R_11865861_SNP [dm6]	G	C	5.869e^-4	1	INTRON CG6959
3R	26615054	3R_26615054_SNP [dm3] 3R_30789332_SNP [dm6]	A	T	5.870e^-4	1	DOWNSTREAM wts & 1 other INTERGENIC
2R	3975754	2R_3975754_SNP [dm3] 2R_8088249_SNP [dm6]	C	T	5.871e^-4	1	NON_SYNONYMOUS_CODING sut2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7284469	2R_7284469_SNP [dm3] 2R_11396964_SNP [dm6]	T	C	5.871e^-4	1	START_GAINED sprt UTR_5_PRIME sprt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7260447	2R_7260447_SNP [dm3] 2R_11372942_SNP [dm6]	T	C	5.879e^-4	1	UPSTREAM CG13203 INTERGENIC
3L	7194318	3L_7194318_SNP [dm3] 3L_7201218_SNP [dm6]	T	C	5.885e^-4	1	INTERGENIC
2L	14854384	2L_14854384_SNP [dm3] 2L_14854384_SNP [dm6]	A	G	5.886e^-4	1	INTERGENIC
3L	2996700	3L_2996700_SNP [dm3] 3L_2996700_SNP [dm6]	A	G	5.890e^-4	1	DOWNSTREAM CG2113 INTERGENIC
3L	15753808	3L_15753808_SNP [dm3] 3L_15760708_SNP [dm6]	T	A	5.896e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18933346	2R_18933346_DEL [dm3] 2R_23045823_DEL [dm6]	AT	A	5.904e^-4	1	UPSTREAM twi INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15014740	2L_15014740_SNP [dm3] 2L_15014740_SNP [dm6]	A	G	5.908e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15880725	3L_15880725_SNP [dm3] 3L_15887625_SNP [dm6]	G	T	5.917e^-4	1	INTRON pHCl
3L	7423971	3L_7423971_SNP [dm3] 3L_7430871_SNP [dm6]	A	G	5.920e^-4	1	INTRON CG42458
3R	10105455	3R_10105455_SNP [dm3] 3R_14279733_SNP [dm6]	T	A	5.930e^-4	1	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9566698	3L_9566698_SNP [dm3] 3L_9573598_SNP [dm6]	T	C	5.936e^-4	1	INTRON CG42673
2R	18604013	2R_18604013_SNP [dm3] 2R_22716508_SNP [dm6]	C	A	5.938e^-4	1	SYNONYMOUS_CODING CG30268 DOWNSTREAM jbug	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	21774506	3R_21774506_SNP [dm3] 3R_25948784_SNP [dm6]	G	A	5.947e^-4	1	INTRON CCAP-R
3R	20509250	3R_20509250_SNP [dm3] 3R_24683528_SNP [dm6]	C	T	5.956e^-4	1	INTRON slo
2R	2481462	2R_2481462_SNP [dm3] 2R_6593957_SNP [dm6]	A	G	5.971e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	2692665	3L_2692665_SNP [dm3] 3L_2692665_SNP [dm6]	G	A	5.971e^-4	1	INTRON Fife
3R	14046462	3R_14046462_SNP [dm3] 3R_18220740_SNP [dm6]	C	A	5.972e^-4	1	UPSTREAM CG7183 DOWNSTREAM mTerf5 INTRON CG7988	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	6819400	2R_6819400_SNP [dm3] 2R_10931895_SNP [dm6]	G	A	5.972e^-4	1	INTERGENIC
2L	9576805	2L_9576805_SNP [dm3] 2L_9576805_SNP [dm6]	A	T	5.973e^-4	1	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	15665189	X_15665189_SNP [dm3] X_15771156_SNP [dm6]	C	T	5.975e^-4	1	SYNONYMOUS_CODING CG33172	TF binding site mE1_TFBS_sens
X	4358333	X_4358333_SNP [dm3] X_4464300_SNP [dm6]	T	C	5.980e^-4	1	INTRON bi & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12568598	2L_12568598_SNP [dm3] 2L_12568598_SNP [dm6]	C	A	5.984e^-4	1	INTERGENIC
2L	14261635	2L_14261635_SNP [dm3] 2L_14261635_SNP [dm6]	A	T	5.986e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	5460143	3L_5460143_SNP [dm3] 3L_5467043_SNP [dm6]	T	A	5.992e^-4	1	INTERGENIC
2R	9544375	2R_9544375_SNP [dm3] 2R_13656870_SNP [dm6]	C	A	6.002e^-4	1	INTRON fas
2L	9513661	2L_9513661_SNP [dm3] 2L_9513661_SNP [dm6]	C	A	6.004e^-4	1	INTRON CG33298
2L	851563	2L_851563_SNP [dm3] 2L_851563_SNP [dm6]	G	T	6.005e^-4	1	SYNONYMOUS_CODING CG4291 UPSTREAM drongo DOWNSTREAM CR44060	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	14193035	2R_14193035_DEL [dm3] 2R_18305530_DEL [dm6]	TT	T	6.011e^-4	1	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	7431719	2L_7431719_SNP [dm3] 2L_7431719_SNP [dm6]	G	C	6.013e^-4	1	INTRON CG5958
2L	14865404	2L_14865404_SNP [dm3] 2L_14865404_SNP [dm6]	C	A	6.026e^-4	1	INTERGENIC
3L	8021509	3L_8021509_SNP [dm3] 3L_8028409_SNP [dm6]	A	G	6.026e^-4	1	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad
3R	8268696	3R_8268696_SNP [dm3] 3R_12442974_SNP [dm6]	C	A	6.048e^-4	1	UPSTREAM Desat1 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	11526648	X_11526648_SNP [dm3] X_11632615_SNP [dm6]	T	C	6.057e^-4	1	INTRON Ptp10D
2L	3669223	2L_3669223_SNP [dm3] 2L_3669223_SNP [dm6]	G	A	6.060e^-4	1	UPSTREAM Sfp24Ba & 1 other DOWNSTREAM Sfp24Bb & 1 other INTRON CG34340
X	2195806	X_2195806_SNP [dm3] X_2301773_SNP [dm6]	T	C	6.061e^-4	1	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

Cuticul_2_Me_C30 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results