DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.343e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2346 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	23473366	3R_23473366_SNP [dm3] 3R_27647644_SNP [dm6]	G	A	2.157e^-8	0.04	UPSTREAM tau INTRON tau
3R	23473368	3R_23473368_DEL [dm3] 3R_27647646_DEL [dm6]	TGGAT	T	8.557e^-8	0.08	UPSTREAM tau INTRON tau
2L	15065123	2L_15065123_SNP [dm3] 2L_15065123_SNP [dm6]	A	C	2.669e^-7	0.167	INTRON vas & 1 other
3R	23533568	3R_23533568_SNP [dm3] 3R_27707846_SNP [dm6]	A	G	5.425e^-7	0.254	SYNONYMOUS_CODING CG12877	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	8826108	X_8826108_SNP [dm3] X_8932075_SNP [dm6]	A	G	8.498e^-7	0.319	INTRON rdgA
2L	15040215	2L_15040215_SNP [dm3] 2L_15040215_SNP [dm6]	G	A	1.828e^-6	0.426	SYNONYMOUS_CODING Su_H_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	6307160	3R_6307160_SNP [dm3] 3R_10481438_SNP [dm6]	C	A	2.019e^-6	0.426	INTERGENIC
2R	14146360	2R_14146360_SNP [dm3] 2R_18258855_SNP [dm6]	T	A	2.069e^-6	0.426	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26216585	3R_26216585_SNP [dm3] 3R_30390863_SNP [dm6]	A	G	2.509e^-6	0.426	DOWNSTREAM Fer2LCH INTERGENIC
X	13481529	X_13481529_SNP [dm3] X_13587496_SNP [dm6]	T	C	2.829e^-6	0.426	INTRON Tango13
3R	26216620	3R_26216620_SNP [dm3] 3R_30390898_SNP [dm6]	A	G	3.463e^-6	0.426	DOWNSTREAM Fer2LCH INTERGENIC
3R	26216634	3R_26216634_SNP [dm3] 3R_30390912_SNP [dm6]	G	T	3.463e^-6	0.426	DOWNSTREAM Fer2LCH INTERGENIC
3R	26216616	3R_26216616_SNP [dm3] 3R_30390894_SNP [dm6]	A	T	3.600e^-6	0.426	DOWNSTREAM Fer2LCH INTERGENIC
2R	7294179	2R_7294179_SNP [dm3] 2R_11406674_SNP [dm6]	C	T	3.733e^-6	0.426	SYNONYMOUS_CODING CG7759
3R	26216867	3R_26216867_SNP [dm3] 3R_30391145_SNP [dm6]	T	C	3.811e^-6	0.426	DOWNSTREAM Fer2LCH INTERGENIC
2R	17747290	2R_17747290_SNP [dm3] 2R_21859785_SNP [dm6]	T	C	3.820e^-6	0.426	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7294182	2R_7294182_SNP [dm3] 2R_11406677_SNP [dm6]	A	G	3.857e^-6	0.426	SYNONYMOUS_CODING CG7759
3R	3427966	3R_3427966_SNP [dm3] 3R_7602244_SNP [dm6]	T	C	4.795e^-6	0.474	INTRON CG34127
3L	2184150	3L_2184150_SNP [dm3] 3L_2184150_SNP [dm6]	T	G	5.027e^-6	0.474	INTERGENIC
2L	15051516	2L_15051516_SNP [dm3] 2L_15051516_SNP [dm6]	C	T	5.053e^-6	0.474	INTRON ck	regulatory region REDfly_CRMs
3R	3216044	3R_3216044_SNP [dm3] 3R_7390322_SNP [dm6]	A	G	5.761e^-6	0.496	INTERGENIC
3R	23533226	3R_23533226_SNP [dm3] 3R_27707504_SNP [dm6]	G	A	6.217e^-6	0.496	SYNONYMOUS_CODING CG12877 UPSTREAM CG12428	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	3216093	3R_3216093_SNP [dm3] 3R_7390371_SNP [dm6]	A	T	6.657e^-6	0.496	INTERGENIC
2L	18855251	2L_18855251_SNP [dm3] 2L_18855251_SNP [dm6]	A	G	8.071e^-6	0.496	UTR_3_PRIME CG10602 DOWNSTREAM CG17321	TF binding site mE1_TFBS_cad
3R	3262179	3R_3262179_INS [dm3] 3R_7436457_INS [dm6]	T	TTTAAGT	8.200e^-6	0.496	INTERGENIC
2R	11590003	2R_11590003_SNP [dm3] 2R_15702498_SNP [dm6]	G	A	8.346e^-6	0.496	UPSTREAM CG30080 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26512851	3R_26512851_SNP [dm3] 3R_30687129_SNP [dm6]	T	A	8.525e^-6	0.496	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8340766	X_8340766_SNP [dm3] X_8446733_SNP [dm6]	T	A	8.557e^-6	0.496	DOWNSTREAM org-1 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9669640	2L_9669640_SNP [dm3] 2L_9669640_SNP [dm6]	C	T	8.615e^-6	0.496	EXON CR44150
2R	11589995	2R_11589995_SNP [dm3] 2R_15702490_SNP [dm6]	C	G	8.695e^-6	0.496	UPSTREAM CG30080 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23472173	3R_23472173_SNP [dm3] 3R_27646451_SNP [dm6]	C	A	8.895e^-6	0.496	SYNONYMOUS_CODING tau	TF binding site BDTNP1_TFBS_prd
2R	7294173	2R_7294173_SNP [dm3] 2R_11406668_SNP [dm6]	G	A	9.063e^-6	0.496	SYNONYMOUS_CODING CG7759
3R	26216584	3R_26216584_SNP [dm3] 3R_30390862_SNP [dm6]	T	C	9.094e^-6	0.496	DOWNSTREAM Fer2LCH INTERGENIC
3R	26216822	3R_26216822_SNP [dm3] 3R_30391100_SNP [dm6]	C	A	9.384e^-6	0.496	DOWNSTREAM Fer2LCH INTERGENIC
2L	9669668	2L_9669668_SNP [dm3] 2L_9669668_SNP [dm6]	G	A	9.954e^-6	0.496	EXON CR44150
3L	1403704	3L_1403704_SNP [dm3] 3L_1403704_SNP [dm6]	C	A	1.016e^-5	0.496	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3R	6621248	3R_6621248_SNP [dm3] 3R_10795526_SNP [dm6]	G	A	1.018e^-5	0.496	NON_SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA
2L	6898844	2L_6898844_SNP [dm3] 2L_6898844_SNP [dm6]	T	C	1.024e^-5	0.496	INTRON Nlg2
3R	14453671	3R_14453671_SNP [dm3] 3R_18627949_SNP [dm6]	A	T	1.057e^-5	0.496	DOWNSTREAM tRNA:CR31228 INTRON qin
3R	3260702	3R_3260702_SNP [dm3] 3R_7434980_SNP [dm6]	T	G	1.061e^-5	0.496	INTERGENIC
2L	9669583	2L_9669583_SNP [dm3] 2L_9669583_SNP [dm6]	A	T	1.087e^-5	0.496	DOWNSTREAM CR44150 INTERGENIC
3R	15742427	3R_15742427_SNP [dm3] 3R_19916705_SNP [dm6]	T	C	1.166e^-5	0.496	NON_SYNONYMOUS_CODING CG4465	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9669614	2L_9669614_SNP [dm3] 2L_9669614_SNP [dm6]	C	T	1.175e^-5	0.496	DOWNSTREAM CR44150 INTERGENIC
2L	9669550	2L_9669550_SNP [dm3] 2L_9669550_SNP [dm6]	G	A	1.223e^-5	0.496	DOWNSTREAM CR44150 INTERGENIC
2L	9669629	2L_9669629_INS [dm3] 2L_9669629_INS [dm6]	A	AGTATCA	1.232e^-5	0.496	DOWNSTREAM CR44150 INTERGENIC
2L	15054168	2L_15054168_SNP [dm3] 2L_15054168_SNP [dm6]	C	T	1.342e^-5	0.496	INTRON ck	regulatory region REDfly_CRMs
2R	17438764	2R_17438764_SNP [dm3] 2R_21551259_SNP [dm6]	C	T	1.353e^-5	0.496	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	11915487	X_11915487_SNP [dm3] X_12021454_SNP [dm6]	C	T	1.405e^-5	0.496	NON_SYNONYMOUS_CODING Tango4 DOWNSTREAM CG15735	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9669563	2L_9669563_SNP [dm3] 2L_9669563_SNP [dm6]	G	A	1.408e^-5	0.496	DOWNSTREAM CR44150 INTERGENIC
3R	6303618	3R_6303618_SNP [dm3] 3R_10477896_SNP [dm6]	A	G	1.409e^-5	0.496	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7286582	2R_7286582_SNP [dm3] 2R_11399077_SNP [dm6]	T	A	1.416e^-5	0.496	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11830599	2R_11830599_SNP [dm3] 2R_15943094_SNP [dm6]	A	G	1.422e^-5	0.496	UPSTREAM CG30093 INTRON Cyp4aa1
2L	15057686	2L_15057686_SNP [dm3] 2L_15057686_SNP [dm6]	A	C	1.426e^-5	0.496	UTR_5_PRIME ck UPSTREAM CG33679	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	23533949	3R_23533949_SNP [dm3] 3R_27708227_SNP [dm6]	C	T	1.427e^-5	0.496	SYNONYMOUS_CODING CG12877	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9669576	2L_9669576_SNP [dm3] 2L_9669576_SNP [dm6]	T	A	1.511e^-5	0.507	DOWNSTREAM CR44150 INTERGENIC
2R	7289580	2R_7289580_INS [dm3] 2R_11402075_INS [dm6]	A	AGGAA	1.513e^-5	0.507	INTERGENIC
3R	25914532	3R_25914532_SNP [dm3] 3R_30088810_SNP [dm6]	G	A	1.638e^-5	0.516	INTRON sima
3R	1713331	3R_1713331_SNP [dm3] 3R_5887609_SNP [dm6]	A	G	1.667e^-5	0.516	INTRON CG34113
3L	18412397	3L_18412397_INS [dm3] 3L_18419297_INS [dm6]	A	AA	1.700e^-5	0.516	INTERGENIC
3R	18971433	3R_18971433_SNP [dm3] 3R_23145711_SNP [dm6]	T	C	1.727e^-5	0.516	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	2407441	3L_2407441_SNP [dm3] 3L_2407441_SNP [dm6]	C	T	1.735e^-5	0.516	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6166478	2L_6166478_SNP [dm3] 2L_6166478_SNP [dm6]	A	G	1.739e^-5	0.516	INTERGENIC
3L	5729005	3L_5729005_SNP [dm3] 3L_5735905_SNP [dm6]	C	T	1.790e^-5	0.516	SYNONYMOUS_CODING sif
3R	3216077	3R_3216077_SNP [dm3] 3R_7390355_SNP [dm6]	C	T	1.795e^-5	0.516	INTERGENIC
3R	23369756	3R_23369756_SNP [dm3] 3R_27544034_SNP [dm6]	C	T	1.810e^-5	0.516	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
2R	8278706	2R_8278706_SNP [dm3] 2R_12391201_SNP [dm6]	G	A	1.849e^-5	0.516	SYNONYMOUS_CODING Cpr49Ad
2R	7289824	2R_7289824_SNP [dm3] 2R_11402319_SNP [dm6]	A	T	1.862e^-5	0.516	INTERGENIC
3R	24677363	3R_24677363_SNP [dm3] 3R_28851641_SNP [dm6]	C	T	1.891e^-5	0.516	INTRON spg
2L	15417951	2L_15417951_SNP [dm3] 2L_15417951_SNP [dm6]	T	G	1.899e^-5	0.516	UTR_3_PRIME CG44869
3R	23557764	3R_23557764_SNP [dm3] 3R_27732042_SNP [dm6]	C	T	1.975e^-5	0.529	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15084930	2L_15084930_SNP [dm3] 2L_15084930_SNP [dm6]	C	T	2.035e^-5	0.534	INTRON CG15270
2R	11589944	2R_11589944_SNP [dm3] 2R_15702439_SNP [dm6]	A	G	2.124e^-5	0.534	UPSTREAM CG30080 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15084928	2L_15084928_SNP [dm3] 2L_15084928_SNP [dm6]	C	G	2.155e^-5	0.534	INTRON CG15270
X	22058066	X_22058066_SNP [dm3] X_22656230_SNP [dm6]	G	T	2.162e^-5	0.534	INTERGENIC
3L	1862219	3L_1862219_SNP [dm3] 3L_1862219_SNP [dm6]	C	T	2.163e^-5	0.534	UTR_5_PRIME R UPSTREAM R DOWNSTREAM HBS1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	19512411	3L_19512411_SNP [dm3] 3L_19519311_SNP [dm6]	T	C	2.174e^-5	0.534	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3L	9611826	3L_9611826_SNP [dm3] 3L_9618726_SNP [dm6]	A	G	2.292e^-5	0.534	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
X	22058067	X_22058067_SNP [dm3] X_22656231_SNP [dm6]	G	T	2.314e^-5	0.534	INTERGENIC
3R	23472083	3R_23472083_SNP [dm3] 3R_27646361_SNP [dm6]	G	C	2.327e^-5	0.534	SYNONYMOUS_CODING tau	TF binding site BDTNP1_TFBS_prd
3R	23489937	3R_23489937_INS [dm3] 3R_27664215_INS [dm6]	T	TAT	2.355e^-5	0.534	INTRON unc80
3R	25914256	3R_25914256_SNP [dm3] 3R_30088534_SNP [dm6]	A	G	2.355e^-5	0.534	INTRON sima
3R	3216091	3R_3216091_SNP [dm3] 3R_7390369_SNP [dm6]	A	T	2.434e^-5	0.534	INTERGENIC
2R	14444066	2R_14444066_INS [dm3] 2R_18556561_INS [dm6]	T	TGT	2.441e^-5	0.534	INTRON GEFmeso
3L	3787026	3L_3787026_SNP [dm3] 3L_3787026_SNP [dm6]	A	T	2.470e^-5	0.534	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9669543	2L_9669543_SNP [dm3] 2L_9669543_SNP [dm6]	C	G	2.488e^-5	0.534	DOWNSTREAM CR44150 INTERGENIC
2R	11830629	2R_11830629_SNP [dm3] 2R_15943124_SNP [dm6]	T	C	2.518e^-5	0.534	UPSTREAM CG30093 INTRON Cyp4aa1
3R	4855208	3R_4855208_SNP [dm3] 3R_9029486_SNP [dm6]	G	T	2.540e^-5	0.534	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	26216623	3R_26216623_SNP [dm3] 3R_30390901_SNP [dm6]	T	A	2.566e^-5	0.534	DOWNSTREAM Fer2LCH INTERGENIC
3L	8825149	3L_8825149_SNP [dm3] 3L_8832049_SNP [dm6]	G	C	2.603e^-5	0.534	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8825177	3L_8825177_SNP [dm3] 3L_8832077_SNP [dm6]	A	C	2.642e^-5	0.534	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	8069655	3R_8069655_SNP [dm3] 3R_12243933_SNP [dm6]	A	G	2.659e^-5	0.534	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	2656061	3L_2656061_SNP [dm3] 3L_2656061_SNP [dm6]	C	T	2.667e^-5	0.534	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3L	1750367	3L_1750367_SNP [dm3] 3L_1750367_SNP [dm6]	A	G	2.669e^-5	0.534	SYNONYMOUS_CODING CG13921	TF binding site mE1_TFBS_chinmo
3R	6005759	3R_6005759_SNP [dm3] 3R_10180037_SNP [dm6]	G	A	2.707e^-5	0.534	INTRON CG12814
3L	2655990	3L_2655990_SNP [dm3] 3L_2655990_SNP [dm6]	A	G	2.731e^-5	0.534	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3L	2656035	3L_2656035_SNP [dm3] 3L_2656035_SNP [dm6]	A	G	2.731e^-5	0.534	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3R	25914591	3R_25914591_SNP [dm3] 3R_30088869_SNP [dm6]	G	A	2.789e^-5	0.534	INTRON sima
3R	22406392	3R_22406392_SNP [dm3] 3R_26580670_SNP [dm6]	T	G	2.812e^-5	0.534	INTRON scrib	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25622053	3R_25622053_SNP [dm3] 3R_29796331_SNP [dm6]	G	T	2.816e^-5	0.534	SYNONYMOUS_CODING CG7837 DOWNSTREAM sro	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26216640	3R_26216640_SNP [dm3] 3R_30390918_SNP [dm6]	C	T	2.918e^-5	0.547	DOWNSTREAM Fer2LCH INTERGENIC
3R	3262061	3R_3262061_SNP [dm3] 3R_7436339_SNP [dm6]	T	A	2.969e^-5	0.551	INTERGENIC
X	13481441	X_13481441_SNP [dm3] X_13587408_SNP [dm6]	C	A	3.066e^-5	0.564	INTRON Tango13
3L	13329225	3L_13329225_SNP [dm3] 3L_13336125_SNP [dm6]	T	C	3.144e^-5	0.567	INTERGENIC
X	2378978	X_2378978_SNP [dm3] X_2484945_SNP [dm6]	T	A	3.145e^-5	0.567	INTRON trol
X	11368820	X_11368820_SNP [dm3] X_11474787_SNP [dm6]	A	G	3.229e^-5	0.577	INTRON CG43155
3L	4797687	3L_4797687_SNP [dm3] 3L_4797687_SNP [dm6]	T	C	3.361e^-5	0.595	INTERGENIC
3L	19512027	3L_19512027_SNP [dm3] 3L_19518927_SNP [dm6]	G	A	3.424e^-5	0.595	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3R	17874708	3R_17874708_INS [dm3] 3R_22048986_INS [dm6]	C	CAGGC	3.455e^-5	0.595	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	9669621	2L_9669621_SNP [dm3] 2L_9669621_SNP [dm6]	T	C	3.481e^-5	0.595	DOWNSTREAM CR44150 INTERGENIC
3R	3246208	3R_3246208_SNP [dm3] 3R_7420486_SNP [dm6]	T	A	3.487e^-5	0.595	NON_SYNONYMOUS_CODING CG34023 UPSTREAM wa-cup DOWNSTREAM CG31544
2L	18934885	2L_18934885_SNP [dm3] 2L_18934885_SNP [dm6]	A	G	3.710e^-5	0.614	INTRON ssp3	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	10740048	2L_10740048_SNP [dm3] 2L_10740048_SNP [dm6]	G	A	3.720e^-5	0.614	NON_SYNONYMOUS_CODING CG12299 DOWNSTREAM CG6729	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6286541	3R_6286541_SNP [dm3] 3R_10460819_SNP [dm6]	C	T	3.730e^-5	0.614	UPSTREAM CR44939 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9532056	2L_9532056_SNP [dm3] 2L_9532056_SNP [dm6]	A	G	3.773e^-5	0.614	INTRON Oatp30B
3L	10649833	3L_10649833_SNP [dm3] 3L_10656733_SNP [dm6]	T	C	3.853e^-5	0.614	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
3L	2184184	3L_2184184_SNP [dm3] 3L_2184184_SNP [dm6]	A	C	3.870e^-5	0.614	INTERGENIC
X	3459657	X_3459657_DEL [dm3] X_3565624_DEL [dm6]	TATATGCACACGTAT...	T	3.872e^-5	0.614	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	12957051	3R_12957051_SNP [dm3] 3R_17131329_SNP [dm6]	C	T	3.894e^-5	0.614	SYNONYMOUS_CODING CG4053 UPSTREAM CG17475	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25789820	3R_25789820_SNP [dm3] 3R_29964098_SNP [dm6]	C	T	3.916e^-5	0.614	INTRON TkR99D
3R	3260686	3R_3260686_SNP [dm3] 3R_7434964_SNP [dm6]	G	A	3.954e^-5	0.614	INTERGENIC
2L	15083517	2L_15083517_SNP [dm3] 2L_15083517_SNP [dm6]	T	A	3.958e^-5	0.614	INTRON CG15270
3L	4050430	3L_4050430_SNP [dm3] 3L_4050430_SNP [dm6]	A	G	4.034e^-5	0.614	INTRON CG1136	TF binding site mE1_TFBS_inv
3R	6565042	3R_6565042_SNP [dm3] 3R_10739320_SNP [dm6]	T	C	4.035e^-5	0.614	INTRON TkR86C	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	23533801	3R_23533801_SNP [dm3] 3R_27708079_SNP [dm6]	G	C	4.106e^-5	0.614	NON_SYNONYMOUS_CODING CG12877	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	758490	3L_758490_SNP [dm3] 3L_758490_SNP [dm6]	C	T	4.123e^-5	0.614	INTERGENIC
2L	9532049	2L_9532049_SNP [dm3] 2L_9532049_SNP [dm6]	T	A	4.166e^-5	0.614	INTRON Oatp30B
2R	14758172	2R_14758172_SNP [dm3] 2R_18870667_SNP [dm6]	A	G	4.168e^-5	0.614	INTERGENIC
3R	26634276	3R_26634276_SNP [dm3] 3R_30808554_SNP [dm6]	A	G	4.239e^-5	0.614	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	23502540	3R_23502540_SNP [dm3] 3R_27676818_SNP [dm6]	T	C	4.276e^-5	0.614	SYNONYMOUS_CODING unc80 UPSTREAM CG5590	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14495973	2L_14495973_SNP [dm3] 2L_14495973_SNP [dm6]	A	C	4.289e^-5	0.614	DOWNSTREAM tRNA:P:35Bd INTERGENIC
3R	1807206	3R_1807206_SNP [dm3] 3R_5981484_SNP [dm6]	C	T	4.290e^-5	0.614	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9669554	2L_9669554_SNP [dm3] 2L_9669554_SNP [dm6]	C	T	4.342e^-5	0.617	DOWNSTREAM CR44150 INTERGENIC
3L	4155871	3L_4155871_SNP [dm3] 3L_4155871_SNP [dm6]	G	A	4.421e^-5	0.622	SYNONYMOUS_CODING nab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24844807	3R_24844807_DEL [dm3] 3R_29019085_DEL [dm6]	TGTA	T	4.443e^-5	0.622	INTRON wat
2R	18610059	2R_18610059_SNP [dm3] 2R_22722554_SNP [dm6]	A	G	4.555e^-5	0.631	DOWNSTREAM jbug INTRON jbug
3R	5650972	3R_5650972_SNP [dm3] 3R_9825250_SNP [dm6]	T	C	4.783e^-5	0.631	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
X	2378975	X_2378975_SNP [dm3] X_2484942_SNP [dm6]	C	T	4.816e^-5	0.631	INTRON trol
2R	14146330	2R_14146330_SNP [dm3] 2R_18258825_SNP [dm6]	A	C	4.822e^-5	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7449480	3L_7449480_SNP [dm3] 3L_7456380_SNP [dm6]	C	T	4.865e^-5	0.631	SYNONYMOUS_CODING ppk26	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25914557	3R_25914557_SNP [dm3] 3R_30088835_SNP [dm6]	T	G	4.875e^-5	0.631	INTRON sima
3L	16162063	3L_16162063_SNP [dm3] 3L_16168963_SNP [dm6]	G	C	4.940e^-5	0.631	DOWNSTREAM CG33796 INTERGENIC
2R	16431954	2R_16431954_SNP [dm3] 2R_20544449_SNP [dm6]	C	G	4.955e^-5	0.631	INTERGENIC
3R	24677362	3R_24677362_SNP [dm3] 3R_28851640_SNP [dm6]	T	C	4.964e^-5	0.631	INTRON spg
X	13291616	X_13291616_SNP [dm3] X_13397583_SNP [dm6]	C	T	4.978e^-5	0.631	INTRON CG1673	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15062418	2L_15062418_SNP [dm3] 2L_15062418_SNP [dm6]	T	A	4.985e^-5	0.631	DOWNSTREAM vig INTRON vas
2L	15058099	2L_15058099_SNP [dm3] 2L_15058099_SNP [dm6]	A	G	5.035e^-5	0.631	UPSTREAM CG33679 & 1 other DOWNSTREAM TfIIS INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	23548187	3R_23548187_SNP [dm3] 3R_27722465_SNP [dm6]	C	A	5.051e^-5	0.631	INTERGENIC
3R	3260758	3R_3260758_SNP [dm3] 3R_7435036_SNP [dm6]	A	T	5.060e^-5	0.631	INTERGENIC
3R	1941776	3R_1941776_SNP [dm3] 3R_6116054_SNP [dm6]	G	A	5.067e^-5	0.631	INTERGENIC
3R	2021731	3R_2021731_SNP [dm3] 3R_6196009_SNP [dm6]	C	T	5.080e^-5	0.631	DOWNSTREAM NPFR INTERGENIC
3L	2656081	3L_2656081_SNP [dm3] 3L_2656081_SNP [dm6]	A	G	5.081e^-5	0.631	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3R	24844793	3R_24844793_INS [dm3] 3R_29019071_INS [dm6]	A	AA	5.166e^-5	0.633	INTRON wat
3L	15982986	3L_15982986_SNP [dm3] 3L_15989886_SNP [dm6]	C	T	5.183e^-5	0.633	SYNONYMOUS_CODING Hip14	TF binding site mE1_TFBS_cad
3R	26216927	3R_26216927_SNP [dm3] 3R_30391205_SNP [dm6]	T	C	5.215e^-5	0.633	DOWNSTREAM Fer2LCH INTERGENIC
X	8340785	X_8340785_SNP [dm3] X_8446752_SNP [dm6]	A	G	5.237e^-5	0.633	DOWNSTREAM org-1 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	754754	3L_754754_SNP [dm3] 3L_754754_SNP [dm6]	A	T	5.300e^-5	0.633	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	18996244	X_18996244_SNP [dm3] X_19102211_SNP [dm6]	C	G	5.317e^-5	0.633	INTERGENIC
3R	25914540	3R_25914540_SNP [dm3] 3R_30088818_SNP [dm6]	C	A	5.330e^-5	0.633	INTRON sima
2L	3228383	2L_3228383_SNP [dm3] 2L_3228383_SNP [dm6]	C	T	5.383e^-5	0.635	INTERGENIC
2L	15153286	2L_15153286_SNP [dm3] 2L_15153286_SNP [dm6]	T	G	5.483e^-5	0.639	INTERGENIC
2L	14363628	2L_14363628_SNP [dm3] 2L_14363628_SNP [dm6]	C	A	5.647e^-5	0.639	NON_SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2657275	3L_2657275_SNP [dm3] 3L_2657275_SNP [dm6]	A	G	5.658e^-5	0.639	UTR_3_PRIME Fife	TF binding site BDTNP1_TFBS_da
2R	18610222	2R_18610222_SNP [dm3] 2R_22722717_SNP [dm6]	T	A	5.684e^-5	0.639	UTR_3_PRIME jbug INTRON jbug
3R	24451387	3R_24451387_SNP [dm3] 3R_28625665_SNP [dm6]	T	A	5.807e^-5	0.639	INTRON CG10011
2L	3228388	2L_3228388_SNP [dm3] 2L_3228388_SNP [dm6]	C	T	5.812e^-5	0.639	INTERGENIC
3R	3266173	3R_3266173_SNP [dm3] 3R_7440451_SNP [dm6]	T	G	5.845e^-5	0.639	INTRON CG14598
X	4768487	X_4768487_INS [dm3] X_4874454_INS [dm6]	A	AAC	5.852e^-5	0.639	UPSTREAM CR43495 INTRON CG42594
X	8340817	X_8340817_SNP [dm3] X_8446784_SNP [dm6]	T	C	5.885e^-5	0.639	DOWNSTREAM org-1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20157449	X_20157449_SNP [dm3] X_20286422_SNP [dm6]	A	G	5.907e^-5	0.639	INTERGENIC
3L	8825113	3L_8825113_SNP [dm3] 3L_8832013_SNP [dm6]	A	T	5.908e^-5	0.639	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	25770171	3R_25770171_SNP [dm3] 3R_29944449_SNP [dm6]	C	T	5.980e^-5	0.639	SYNONYMOUS_CODING CG15523
X	2378989	X_2378989_SNP [dm3] X_2484956_SNP [dm6]	T	C	5.982e^-5	0.639	INTRON trol
3L	9331617	3L_9331617_SNP [dm3] 3L_9338517_SNP [dm6]	G	T	5.998e^-5	0.639	UPSTREAM PGRP-LC DOWNSTREAM PGRP-LA INTERGENIC
3L	2658002	3L_2658002_SNP [dm3] 3L_2658002_SNP [dm6]	T	A	6.012e^-5	0.639	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14014232	2L_14014232_SNP [dm3] 2L_14014232_SNP [dm6]	G	T	6.034e^-5	0.639	INTRON bgm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	9679118	2L_9679118_SNP [dm3] 2L_9679118_SNP [dm6]	G	A	6.051e^-5	0.639	INTERGENIC
3R	23534548	3R_23534548_SNP [dm3] 3R_27708826_SNP [dm6]	T	C	6.073e^-5	0.639	INTRON CG12877	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15051513	2L_15051513_SNP [dm3] 2L_15051513_SNP [dm6]	A	T	6.082e^-5	0.639	INTRON ck	regulatory region REDfly_CRMs
2R	19343780	2R_19343780_INS [dm3] 2R_23456257_INS [dm6]	C	CATC	6.278e^-5	0.639	UTR_5_PRIME CG43795	TF binding site mE1_TFBS_chinmo
3R	25914559	3R_25914559_SNP [dm3] 3R_30088837_SNP [dm6]	G	C	6.315e^-5	0.639	INTRON sima
3R	25914515	3R_25914515_SNP [dm3] 3R_30088793_SNP [dm6]	A	G	6.336e^-5	0.639	INTRON sima
3L	7032223	3L_7032223_SNP [dm3] 3L_7039123_SNP [dm6]	G	A	6.343e^-5	0.639	INTRON Mp	TF binding site BDTNP1_TFBS_twi
2L	15057803	2L_15057803_SNP [dm3] 2L_15057803_SNP [dm6]	A	C	6.363e^-5	0.639	UTR_5_PRIME ck UPSTREAM CG33679	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8645608	2L_8645608_SNP [dm3] 2L_8645608_SNP [dm6]	C	A	6.391e^-5	0.639	INTRON Sema-1a
3L	18173322	3L_18173322_SNP [dm3] 3L_18180222_SNP [dm6]	C	A	6.392e^-5	0.639	INTRON W
X	19287454	X_19287454_SNP [dm3] X_19393421_SNP [dm6]	G	C	6.438e^-5	0.639	INTRON kek5
3L	2654335	3L_2654335_SNP [dm3] 3L_2654335_SNP [dm6]	G	A	6.465e^-5	0.639	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup
2L	15094905	2L_15094905_SNP [dm3] 2L_15094905_SNP [dm6]	A	C	6.467e^-5	0.639	NON_SYNONYMOUS_CODING CG15270
3L	2656894	3L_2656894_SNP [dm3] 3L_2656894_SNP [dm6]	A	G	6.520e^-5	0.639	UTR_3_PRIME Fife
3L	2658000	3L_2658000_SNP [dm3] 3L_2658000_SNP [dm6]	G	A	6.520e^-5	0.639	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12760060	2L_12760060_SNP [dm3] 2L_12760060_SNP [dm6]	T	A	6.597e^-5	0.639	DOWNSTREAM CG15483 INTERGENIC
3R	15300609	3R_15300609_SNP [dm3] 3R_19474887_SNP [dm6]	T	A	6.608e^-5	0.639	INTRON Dys
2L	15065528	2L_15065528_SNP [dm3] 2L_15065528_SNP [dm6]	G	C	6.631e^-5	0.639	INTRON vas & 1 other
X	17263644	X_17263644_INS [dm3] X_17369611_INS [dm6]	T	TT	6.651e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4430701	2L_4430701_SNP [dm3] 2L_4430701_SNP [dm6]	G	T	6.666e^-5	0.639	INTRON CG15431
2R	18543853	2R_18543853_SNP [dm3] 2R_22656348_SNP [dm6]	T	A	6.721e^-5	0.639	UTR_5_PRIME CG43326 UTR_3_PRIME CG43325 UPSTREAM CG30196 & 1 other EXON CR45268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15037650	2L_15037650_SNP [dm3] 2L_15037650_SNP [dm6]	C	T	6.765e^-5	0.639	SYNONYMOUS_CODING yellow-c UTR_3_PRIME CIAPIN1
2R	14146313	2R_14146313_SNP [dm3] 2R_18258808_SNP [dm6]	C	T	6.769e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11055303	3R_11055303_SNP [dm3] 3R_15229581_SNP [dm6]	C	A	6.780e^-5	0.639	UPSTREAM mRpS10 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	23445048	3R_23445048_SNP [dm3] 3R_27619326_SNP [dm6]	G	T	6.821e^-5	0.639	INTRON Tusp
3R	23497068	3R_23497068_SNP [dm3] 3R_27671346_SNP [dm6]	T	A	6.875e^-5	0.639	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
3L	2657692	3L_2657692_SNP [dm3] 3L_2657692_SNP [dm6]	C	T	6.938e^-5	0.639	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
3L	5801847	3L_5801847_SNP [dm3] 3L_5808747_SNP [dm6]	A	G	6.950e^-5	0.639	INTRON S6k	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3R	1657674	3R_1657674_SNP [dm3] 3R_5831952_SNP [dm6]	T	C	7.024e^-5	0.639	DOWNSTREAM glob3 INTRON CG1208
3R	23535903	3R_23535903_SNP [dm3] 3R_27710181_SNP [dm6]	T	G	7.040e^-5	0.639	SYNONYMOUS_CODING CG12877
2L	10873583	2L_10873583_DEL [dm3] 2L_10873583_DEL [dm6]	TGA	T	7.044e^-5	0.639	INTERGENIC
2L	15058425	2L_15058425_SNP [dm3] 2L_15058425_SNP [dm6]	A	G	7.068e^-5	0.639	SYNONYMOUS_CODING CG33679 UPSTREAM ck DOWNSTREAM TfIIS	TF binding site BDTNP1_TFBS_dl
3L	16162048	3L_16162048_SNP [dm3] 3L_16168948_SNP [dm6]	C	A	7.214e^-5	0.639	DOWNSTREAM CG33796 INTERGENIC
2L	15058292	2L_15058292_SNP [dm3] 2L_15058292_SNP [dm6]	T	A	7.275e^-5	0.639	UPSTREAM CG33679 & 1 other DOWNSTREAM TfIIS INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	10630934	2R_10630934_SNP [dm3] 2R_14743429_SNP [dm6]	G	T	7.300e^-5	0.639	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25914542	3R_25914542_SNP [dm3] 3R_30088820_SNP [dm6]	T	C	7.350e^-5	0.639	INTRON sima
3L	2657138	3L_2657138_SNP [dm3] 3L_2657138_SNP [dm6]	C	T	7.361e^-5	0.639	UTR_3_PRIME Fife	TF binding site BDTNP1_TFBS_da
3R	14674758	3R_14674758_SNP [dm3] 3R_18849036_SNP [dm6]	T	A	7.396e^-5	0.639	UTR_5_PRIME CG18208	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8868518	X_8868518_DEL [dm3] X_8974485_DEL [dm6]	CAAAGCGTGTAAACG...	T	7.404e^-5	0.639	UPSTREAM CG10962 INTRON rdgA & 1 other
3R	16132705	3R_16132705_DEL [dm3] 3R_20306983_DEL [dm6]	CAT	C	7.440e^-5	0.639	INTRON CG4362	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16132709	3R_16132709_SNP [dm3] 3R_20306987_SNP [dm6]	T	A	7.440e^-5	0.639	INTRON CG4362	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16132711	3R_16132711_MNP [dm3] 3R_20306989_MNP [dm6]	TTC	GGA	7.440e^-5	0.639	INTRON CG4362	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16551038	3L_16551038_SNP [dm3] 3L_16557938_SNP [dm6]	A	G	7.460e^-5	0.639	UTR_3_PRIME CG4229	TF binding site mE1_TFBS_cad
3R	20194424	3R_20194424_SNP [dm3] 3R_24368702_SNP [dm6]	T	C	7.529e^-5	0.639	SYNONYMOUS_CODING CG33341 UPSTREAM CG42812 & 1 other
3R	20194436	3R_20194436_SNP [dm3] 3R_24368714_SNP [dm6]	T	C	7.529e^-5	0.639	SYNONYMOUS_CODING CG33341 UPSTREAM CG42812 & 1 other
3L	14553426	3L_14553426_SNP [dm3] 3L_14560326_SNP [dm6]	G	C	7.545e^-5	0.639	SYNONYMOUS_CODING Lk INTRON CG34039 EXON CR44843	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25769991	3R_25769991_SNP [dm3] 3R_29944269_SNP [dm6]	C	A	7.599e^-5	0.639	SYNONYMOUS_CODING CG15523
3R	22908088	3R_22908088_SNP [dm3] 3R_27082366_SNP [dm6]	G	T	7.623e^-5	0.639	UTR_3_PRIME CG14257 DOWNSTREAM Cpr97Ea INTRON CG14257	TF binding site mE1_TFBS_chinmo
3L	2556978	3L_2556978_SNP [dm3] 3L_2556978_SNP [dm6]	G	A	7.644e^-5	0.639	SYNONYMOUS_CODING msn	TF binding site mE1_TFBS_sens
2L	10460678	2L_10460678_SNP [dm3] 2L_10460678_SNP [dm6]	C	T	7.660e^-5	0.639	SYNONYMOUS_CODING LM408
3R	23548177	3R_23548177_SNP [dm3] 3R_27722455_SNP [dm6]	T	G	7.754e^-5	0.639	INTERGENIC
3R	22004078	3R_22004078_SNP [dm3] 3R_26178356_SNP [dm6]	A	G	7.775e^-5	0.639	INTRON CG31323
2L	9679097	2L_9679097_SNP [dm3] 2L_9679097_SNP [dm6]	T	C	7.788e^-5	0.639	INTERGENIC
X	2378869	X_2378869_SNP [dm3] X_2484836_SNP [dm6]	G	A	7.812e^-5	0.639	INTRON trol
3R	3238036	3R_3238036_SNP [dm3] 3R_7412314_SNP [dm6]	C	T	7.830e^-5	0.639	INTERGENIC
3R	14651063	3R_14651063_SNP [dm3] 3R_18825341_SNP [dm6]	T	A	7.933e^-5	0.642	INTRON CG18208
3R	3504863	3R_3504863_SNP [dm3] 3R_7679141_SNP [dm6]	T	G	7.972e^-5	0.642	INTRON Nlg1
2R	9375466	2R_9375466_SNP [dm3] 2R_13487961_SNP [dm6]	T	A	7.979e^-5	0.642	INTRON bbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11368850	X_11368850_SNP [dm3] X_11474817_SNP [dm6]	G	C	8.052e^-5	0.645	INTRON CG43155
2L	14983409	2L_14983409_SNP [dm3] 2L_14983409_SNP [dm6]	G	A	8.079e^-5	0.645	INTRON mol
X	4881421	X_4881421_SNP [dm3] X_4987388_SNP [dm6]	G	A	8.159e^-5	0.648	INTRON CR44833	regulatory region REDfly_CRMs
2R	11216648	2R_11216648_INS [dm3] 2R_15329143_INS [dm6]	C	CC	8.216e^-5	0.649	UPSTREAM CG8160 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2378643	X_2378643_SNP [dm3] X_2484610_SNP [dm6]	T	A	8.234e^-5	0.649	SPLICE_SITE_REGION trol INTRON trol
3R	15102879	3R_15102879_SNP [dm3] 3R_19277157_SNP [dm6]	G	A	8.270e^-5	0.649	INTERGENIC
3R	3262180	3R_3262180_DEL [dm3] 3R_7436458_DEL [dm6]	GG	G	8.325e^-5	0.651	INTERGENIC
3R	3215933	3R_3215933_DEL [dm3] 3R_7390211_DEL [dm6]	AATAATATATACACA...	A	8.521e^-5	0.663	INTERGENIC
2L	5840851	2L_5840851_SNP [dm3] 2L_5840851_SNP [dm6]	G	A	8.590e^-5	0.666	INTRON TrissinR
3L	18412370	3L_18412370_SNP [dm3] 3L_18419270_SNP [dm6]	A	T	8.732e^-5	0.671	INTERGENIC
X	21097061	X_21097061_SNP [dm3] X_21226034_SNP [dm6]	T	C	8.791e^-5	0.671	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16373457	2L_16373457_SNP [dm3] 2L_16373457_SNP [dm6]	A	G	8.802e^-5	0.671	INTERGENIC
3L	3931783	3L_3931783_SNP [dm3] 3L_3931783_SNP [dm6]	T	C	8.807e^-5	0.671	INTRON Eip63F-1
3R	3262062	3R_3262062_SNP [dm3] 3R_7436340_SNP [dm6]	C	A	8.852e^-5	0.672	INTERGENIC
3L	4457665	3L_4457665_SNP [dm3] 3L_4457665_SNP [dm6]	C	G	8.903e^-5	0.673	SYNONYMOUS_CODING CG11345
3R	23533727	3R_23533727_SNP [dm3] 3R_27708005_SNP [dm6]	A	G	8.978e^-5	0.675	SYNONYMOUS_CODING CG12877	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	5840873	2L_5840873_SNP [dm3] 2L_5840873_SNP [dm6]	T	C	9.001e^-5	0.675	INTRON TrissinR
2L	9669734	2L_9669734_SNP [dm3] 2L_9669734_SNP [dm6]	C	T	9.050e^-5	0.676	EXON CR44150
2L	17249024	2L_17249024_SNP [dm3] 2L_17249024_SNP [dm6]	T	C	9.144e^-5	0.678	INTRON beat-IIIc
3L	6557834	3L_6557834_SNP [dm3] 3L_6564734_SNP [dm6]	A	G	9.144e^-5	0.678	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_inv
3L	9159539	3L_9159539_SNP [dm3] 3L_9166439_SNP [dm6]	C	T	9.240e^-5	0.681	INTRON Rdl
2L	3748392	2L_3748392_SNP [dm3] 2L_3748392_SNP [dm6]	T	G	9.257e^-5	0.681	INTRON CG10019
3R	1770744	3R_1770744_SNP [dm3] 3R_5945022_SNP [dm6]	T	A	9.352e^-5	0.685	INTRON CG34113
X	8051524	X_8051524_SNP [dm3] X_8157491_SNP [dm6]	C	T	9.445e^-5	0.685	UPSTREAM GIIIspla2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	10900564	3R_10900564_SNP [dm3] 3R_15074842_SNP [dm6]	T	C	9.456e^-5	0.685	INTRON dpr9
3L	8314568	3L_8314568_SNP [dm3] 3L_8321468_SNP [dm6]	A	G	9.461e^-5	0.685	INTRON CG13670	TF binding site mE1_TFBS_cad
3R	7318218	3R_7318218_SNP [dm3] 3R_11492496_SNP [dm6]	C	A	9.636e^-5	0.691	INTERGENIC
3R	23497086	3R_23497086_SNP [dm3] 3R_27671364_SNP [dm6]	A	C	9.638e^-5	0.691	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
2L	15056170	2L_15056170_SNP [dm3] 2L_15056170_SNP [dm6]	T	A	9.652e^-5	0.691	INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	23474532	3R_23474532_INS [dm3] 3R_27648810_INS [dm6]	G	GTTG	9.749e^-5	0.695	CODON_INSERTION tau INTRON tau
3R	18249849	3R_18249849_SNP [dm3] 3R_22424127_SNP [dm6]	T	C	9.892e^-5	0.696	DOWNSTREAM mats INTRON pinta
3L	5727769	3L_5727769_SNP [dm3] 3L_5734669_SNP [dm6]	T	G	9.901e^-5	0.696	INTRON sif
3R	23536111	3R_23536111_SNP [dm3] 3R_27710389_SNP [dm6]	C	T	9.907e^-5	0.696	SYNONYMOUS_CODING CG12877
2L	12157174	2L_12157174_SNP [dm3] 2L_12157174_SNP [dm6]	A	G	9.915e^-5	0.696	INTRON CG31760
X	20158892	X_20158892_SNP [dm3] X_20287865_SNP [dm6]	A	G	1.002e^-4	0.696	INTERGENIC
3L	6303062	3L_6303062_DEL [dm3] 3L_6309962_DEL [dm6]	AA	A	1.007e^-4	0.696	INTERGENIC
2L	14461004	2L_14461004_SNP [dm3] 2L_14461004_SNP [dm6]	T	C	1.013e^-4	0.696	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	26940651	3R_26940651_DEL [dm3] 3R_31114929_DEL [dm6]	CCC	C	1.019e^-4	0.696	INTERGENIC
X	21096917	X_21096917_SNP [dm3] X_21225890_SNP [dm6]	A	G	1.025e^-4	0.696	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5311631	3R_5311631_SNP [dm3] 3R_9485909_SNP [dm6]	G	A	1.027e^-4	0.696	INTRON CG16779
3R	23533434	3R_23533434_SNP [dm3] 3R_27707712_SNP [dm6]	C	G	1.035e^-4	0.696	NON_SYNONYMOUS_CODING CG12877 UPSTREAM CG12428	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	18354570	3L_18354570_SNP [dm3] 3L_18361470_SNP [dm6]	T	A	1.038e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	5449883	2L_5449883_SNP [dm3] 2L_5449883_SNP [dm6]	T	C	1.039e^-4	0.696	INTERGENIC
3R	5650322	3R_5650322_SNP [dm3] 3R_9824600_SNP [dm6]	T	C	1.043e^-4	0.696	UPSTREAM CG34302 EXON CR42858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10293316	X_10293316_SNP [dm3] X_10399283_SNP [dm6]	C	G	1.044e^-4	0.696	INTRON flw
3R	27469100	3R_27469100_SNP [dm3] 3R_31643378_SNP [dm6]	G	C	1.046e^-4	0.696	INTRON kek6
3R	21997550	3R_21997550_SNP [dm3] 3R_26171828_SNP [dm6]	G	A	1.049e^-4	0.696	INTRON CG31323
3R	26090786	3R_26090786_SNP [dm3] 3R_30265064_SNP [dm6]	A	T	1.049e^-4	0.696	INTERGENIC	silencer mE1_HDAC_PRE
2L	6126882	2L_6126882_SNP [dm3] 2L_6126882_SNP [dm6]	T	C	1.052e^-4	0.696	DOWNSTREAM Arpc4 & 2 others INTRON WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25793322	3R_25793322_SNP [dm3] 3R_29967600_SNP [dm6]	T	C	1.053e^-4	0.696	INTRON TkR99D
3L	13249593	3L_13249593_INS [dm3] 3L_13256493_INS [dm6]	C	CCTTC	1.055e^-4	0.696	INTRON caps
3R	3259668	3R_3259668_SNP [dm3] 3R_7433946_SNP [dm6]	C	G	1.060e^-4	0.696	INTERGENIC
X	16135052	X_16135052_SNP [dm3] X_16241019_SNP [dm6]	A	G	1.061e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_Med
3R	26505170	3R_26505170_SNP [dm3] 3R_30679448_SNP [dm6]	C	T	1.067e^-4	0.697	INTERGENIC
2L	1705693	2L_1705693_SNP [dm3] 2L_1705693_SNP [dm6]	G	A	1.070e^-4	0.697	SYNONYMOUS_CODING cpb	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22118475	3R_22118475_SNP [dm3] 3R_26292753_SNP [dm6]	A	T	1.080e^-4	0.701	INTERGENIC
2L	15051484	2L_15051484_SNP [dm3] 2L_15051484_SNP [dm6]	C	A	1.086e^-4	0.702	INTRON ck	regulatory region REDfly_CRMs
3R	25770287	3R_25770287_SNP [dm3] 3R_29944565_SNP [dm6]	A	G	1.089e^-4	0.702	SYNONYMOUS_CODING CG15523
3L	15986779	3L_15986779_SNP [dm3] 3L_15993679_SNP [dm6]	T	C	1.103e^-4	0.709	UTR_3_PRIME CG5830
3R	23497074	3R_23497074_SNP [dm3] 3R_27671352_SNP [dm6]	G	A	1.112e^-4	0.71	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
3L	7032248	3L_7032248_SNP [dm3] 3L_7039148_SNP [dm6]	C	A	1.126e^-4	0.71	INTRON Mp	TF binding site BDTNP1_TFBS_twi
2R	7306944	2R_7306944_SNP [dm3] 2R_11419439_SNP [dm6]	A	G	1.130e^-4	0.71	INTRON Drip
3R	22856580	3R_22856580_SNP [dm3] 3R_27030858_SNP [dm6]	C	T	1.136e^-4	0.71	SPLICE_SITE_REGION RYa-R INTRON RYa-R
X	20159065	X_20159065_SNP [dm3] X_20288038_SNP [dm6]	A	G	1.137e^-4	0.71	INTERGENIC
3L	4797099	3L_4797099_SNP [dm3] 3L_4797099_SNP [dm6]	G	A	1.144e^-4	0.71	DOWNSTREAM RhoGEF64C INTERGENIC
3R	23276587	3R_23276587_SNP [dm3] 3R_27450865_SNP [dm6]	A	C	1.147e^-4	0.71	INTERGENIC
3L	13251290	3L_13251290_SNP [dm3] 3L_13258190_SNP [dm6]	T	G	1.148e^-4	0.71	INTRON caps
2L	15094073	2L_15094073_SNP [dm3] 2L_15094073_SNP [dm6]	A	T	1.151e^-4	0.71	INTRON CG15270
3R	15119213	3R_15119213_SNP [dm3] 3R_19293491_SNP [dm6]	C	T	1.158e^-4	0.71	INTERGENIC
3L	4042564	3L_4042564_SNP [dm3] 3L_4042564_SNP [dm6]	A	G	1.162e^-4	0.71	UTR_3_PRIME Rcd5
3L	2650109	3L_2650109_SNP [dm3] 3L_2650109_SNP [dm6]	C	T	1.163e^-4	0.71	UTR_3_PRIME CG1246 DOWNSTREAM Aats-pro	TF binding site mE1_TFBS_HSA
3L	1861185	3L_1861185_SNP [dm3] 3L_1861185_SNP [dm6]	A	G	1.166e^-4	0.71	SYNONYMOUS_CODING R	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10697956	3R_10697956_SNP [dm3] 3R_14872234_SNP [dm6]	G	T	1.167e^-4	0.71	INTRON btsz
3L	8509414	3L_8509414_SNP [dm3] 3L_8516314_SNP [dm6]	G	A	1.168e^-4	0.71	SYNONYMOUS_CODING CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14232948	2R_14232948_SNP [dm3] 2R_18345443_SNP [dm6]	G	A	1.169e^-4	0.71	INTRON sbb
3R	13551147	3R_13551147_SNP [dm3] 3R_17725425_SNP [dm6]	T	C	1.172e^-4	0.71	UPSTREAM Lgr1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	18996215	X_18996215_SNP [dm3] X_19102182_SNP [dm6]	T	C	1.174e^-4	0.71	INTERGENIC
3R	23472638	3R_23472638_SNP [dm3] 3R_27646916_SNP [dm6]	G	C	1.187e^-4	0.712	UPSTREAM tau INTRON tau
2L	15036090	2L_15036090_SNP [dm3] 2L_15036090_SNP [dm6]	A	G	1.190e^-4	0.712	DOWNSTREAM CIAPIN1 INTRON yellow-c
X	2378947	X_2378947_SNP [dm3] X_2484914_SNP [dm6]	A	T	1.191e^-4	0.712	INTRON trol
3R	3267608	3R_3267608_SNP [dm3] 3R_7441886_SNP [dm6]	A	G	1.193e^-4	0.712	UTR_3_PRIME CG14598
2L	15051504	2L_15051504_SNP [dm3] 2L_15051504_SNP [dm6]	A	G	1.207e^-4	0.714	INTRON ck	regulatory region REDfly_CRMs
3R	26940929	3R_26940929_DEL [dm3] 3R_31115207_DEL [dm6]	TGGAAATATTACT...	T	1.210e^-4	0.714	INTERGENIC
3L	18250821	3L_18250821_SNP [dm3] 3L_18257721_SNP [dm6]	T	A	1.218e^-4	0.714	INTERGENIC
2L	15054125	2L_15054125_SNP [dm3] 2L_15054125_SNP [dm6]	C	T	1.221e^-4	0.714	INTRON ck	regulatory region REDfly_CRMs
2R	13833410	2R_13833410_SNP [dm3] 2R_17945905_SNP [dm6]	T	C	1.224e^-4	0.714	INTERGENIC
3R	23533859	3R_23533859_SNP [dm3] 3R_27708137_SNP [dm6]	A	C	1.226e^-4	0.714	SYNONYMOUS_CODING CG12877	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20141125	X_20141125_SNP [dm3] X_20270099_SNP [dm6]	C	T	1.230e^-4	0.714	UPSTREAM Inx6 INTERGENIC
3R	23533982	3R_23533982_SNP [dm3] 3R_27708260_SNP [dm6]	T	G	1.239e^-4	0.714	NON_SYNONYMOUS_CODING CG12877	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18971572	3R_18971572_SNP [dm3] 3R_23145850_SNP [dm6]	C	T	1.240e^-4	0.714	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3R	23445051	3R_23445051_SNP [dm3] 3R_27619329_SNP [dm6]	G	C	1.247e^-4	0.714	INTRON Tusp
X	4768491	X_4768491_SNP [dm3] X_4874458_SNP [dm6]	G	C	1.249e^-4	0.714	UPSTREAM CR43495 INTRON CG42594
3R	12938828	3R_12938828_SNP [dm3] 3R_17113106_SNP [dm6]	A	C	1.252e^-4	0.714	INTRON cher	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	14532977	2R_14532977_SNP [dm3] 2R_18645472_SNP [dm6]	A	C	1.257e^-4	0.714	INTRON SP2637	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	5871678	2L_5871678_SNP [dm3] 2L_5871678_SNP [dm6]	G	A	1.259e^-4	0.714	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	10002244	3R_10002244_SNP [dm3] 3R_14176522_SNP [dm6]	G	A	1.266e^-4	0.714	UTR_3_PRIME Dop1R1 DOWNSTREAM Dop1R1
3R	5085234	3R_5085234_DEL [dm3] 3R_9259512_DEL [dm6]	ATA	A	1.267e^-4	0.714	INTRON CG8436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12157413	2L_12157413_SNP [dm3] 2L_12157413_SNP [dm6]	T	C	1.273e^-4	0.714	INTRON CG31760
3L	6564713	3L_6564713_SNP [dm3] 3L_6571613_SNP [dm6]	T	C	1.274e^-4	0.714	NON_SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7306950	2R_7306950_SNP [dm3] 2R_11419445_SNP [dm6]	A	G	1.277e^-4	0.714	INTRON Drip
3R	23445044	3R_23445044_SNP [dm3] 3R_27619322_SNP [dm6]	G	A	1.279e^-4	0.714	INTRON Tusp
3R	6307562	3R_6307562_SNP [dm3] 3R_10481840_SNP [dm6]	C	T	1.285e^-4	0.714	INTERGENIC
2L	16443458	2L_16443458_SNP [dm3] 2L_16443458_SNP [dm6]	G	A	1.294e^-4	0.714	INTRON CG5888
3L	8067676	3L_8067676_SNP [dm3] 3L_8074576_SNP [dm6]	C	T	1.294e^-4	0.714	SYNONYMOUS_CODING Ect4 INTRON Ect4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21729406	3R_21729406_SNP [dm3] 3R_25903684_SNP [dm6]	A	T	1.304e^-4	0.714	INTRON CR43259 & 1 other
X	14298915	X_14298915_SNP [dm3] X_14404882_SNP [dm6]	T	C	1.305e^-4	0.714	INTRON dpr8
3L	11161454	3L_11161454_SNP [dm3] 3L_11168354_SNP [dm6]	G	A	1.308e^-4	0.714	SYNONYMOUS_CODING wls	TF binding site BDTNP1_TFBS_twi
X	11216838	X_11216838_SNP [dm3] X_11322805_SNP [dm6]	A	G	1.311e^-4	0.714	UPSTREAM sisA INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	754261	3L_754261_SNP [dm3] 3L_754261_SNP [dm6]	G	T	1.317e^-4	0.714	DOWNSTREAM emc INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14476619	2L_14476619_SNP [dm3] 2L_14476619_SNP [dm6]	T	C	1.339e^-4	0.714	INTERGENIC
3R	14661693	3R_14661693_SNP [dm3] 3R_18835971_SNP [dm6]	A	C	1.342e^-4	0.714	INTRON CG18208
3R	3260623	3R_3260623_SNP [dm3] 3R_7434901_SNP [dm6]	A	C	1.353e^-4	0.714	INTERGENIC
2R	7323407	2R_7323407_SNP [dm3] 2R_11435902_SNP [dm6]	G	C	1.353e^-4	0.714	UPSTREAM CG7777 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
2L	18146540	2L_18146540_SNP [dm3] 2L_18146540_SNP [dm6]	T	C	1.359e^-4	0.714	INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10416594	2R_10416594_DEL [dm3] 2R_14529089_DEL [dm6]	GG	G	1.363e^-4	0.714	INTRON ttv
2L	17262573	2L_17262573_SNP [dm3] 2L_17262573_SNP [dm6]	A	T	1.364e^-4	0.714	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	14460982	2L_14460982_SNP [dm3] 2L_14460982_SNP [dm6]	G	A	1.365e^-4	0.714	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	14277620	2R_14277620_SNP [dm3] 2R_18390115_SNP [dm6]	T	C	1.370e^-4	0.714	SYNONYMOUS_CODING CG15065 DOWNSTREAM CG15068 & 1 other
3R	2067844	3R_2067844_SNP [dm3] 3R_6242122_SNP [dm6]	C	A	1.371e^-4	0.714	INTERGENIC
X	20151254	X_20151254_SNP [dm3] X_20280227_SNP [dm6]	C	A	1.374e^-4	0.714	INTERGENIC
3L	11799347	3L_11799347_SNP [dm3] 3L_11806247_SNP [dm6]	C	T	1.377e^-4	0.714	NON_SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_chinmo
3R	1891682	3R_1891682_SNP [dm3] 3R_6065960_SNP [dm6]	G	C	1.381e^-4	0.714	INTERGENIC
2R	17808659	2R_17808659_SNP [dm3] 2R_21921154_SNP [dm6]	A	G	1.391e^-4	0.714	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2313471	3L_2313471_SNP [dm3] 3L_2313471_SNP [dm6]	A	T	1.395e^-4	0.714	INTERGENIC
2L	5840847	2L_5840847_SNP [dm3] 2L_5840847_SNP [dm6]	C	A	1.397e^-4	0.714	INTRON TrissinR
3R	12938684	3R_12938684_SNP [dm3] 3R_17112962_SNP [dm6]	T	A	1.398e^-4	0.714	INTRON cher	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	27459361	3R_27459361_INS [dm3] 3R_31633639_INS [dm6]	A	ACT	1.399e^-4	0.714	INTRON kek6
2R	6676681	2R_6676681_SNP [dm3] 2R_10789176_SNP [dm6]	A	G	1.399e^-4	0.714	INTRON CG33144
2L	15050127	2L_15050127_SNP [dm3] 2L_15050127_SNP [dm6]	G	A	1.402e^-4	0.714	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	13230209	X_13230209_SNP [dm3] X_13336176_SNP [dm6]	T	G	1.402e^-4	0.714	SYNONYMOUS_CODING RpS15Aa	TF binding site mE1_TFBS_sens
2L	17943818	2L_17943818_SNP [dm3] 2L_17943818_SNP [dm6]	C	G	1.402e^-4	0.714	INTERGENIC
2L	2526054	2L_2526054_SNP [dm3] 2L_2526054_SNP [dm6]	T	C	1.407e^-4	0.714	INTERGENIC
2R	13056210	2R_13056210_SNP [dm3] 2R_17168705_SNP [dm6]	T	C	1.408e^-4	0.714	INTERGENIC
3R	23557793	3R_23557793_SNP [dm3] 3R_27732071_SNP [dm6]	A	G	1.412e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15360566	2R_15360566_SNP [dm3] 2R_19473061_SNP [dm6]	G	C	1.424e^-4	0.714	SYNONYMOUS_CODING par-1
2L	15047550	2L_15047550_SNP [dm3] 2L_15047550_SNP [dm6]	G	A	1.424e^-4	0.714	INTRON ck	TF binding site mE1_TFBS_cad
3L	19512034	3L_19512034_SNP [dm3] 3L_19518934_SNP [dm6]	G	T	1.427e^-4	0.714	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3L	2650100	3L_2650100_SNP [dm3] 3L_2650100_SNP [dm6]	T	A	1.427e^-4	0.714	UTR_3_PRIME CG1246 DOWNSTREAM Aats-pro	TF binding site mE1_TFBS_HSA
3L	9233429	3L_9233429_SNP [dm3] 3L_9240329_SNP [dm6]	T	C	1.437e^-4	0.714	INTERGENIC
2R	6676682	2R_6676682_SNP [dm3] 2R_10789177_SNP [dm6]	C	T	1.437e^-4	0.714	INTRON CG33144
2L	7801937	2L_7801937_SNP [dm3] 2L_7801937_SNP [dm6]	A	T	1.441e^-4	0.714	UTR_3_PRIME r2d2 & 1 other DOWNSTREAM cdc14 & 1 other
3L	8381357	3L_8381357_SNP [dm3] 3L_8388257_SNP [dm6]	A	G	1.441e^-4	0.714	NON_SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8067140	2L_8067140_SNP [dm3] 2L_8067140_SNP [dm6]	T	C	1.445e^-4	0.714	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
3R	23557683	3R_23557683_SNP [dm3] 3R_27731961_SNP [dm6]	T	A	1.450e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25895818	3R_25895818_SNP [dm3] 3R_30070096_SNP [dm6]	C	T	1.450e^-4	0.714	INTRON sima
3R	10737365	3R_10737365_SNP [dm3] 3R_14911643_SNP [dm6]	C	T	1.452e^-4	0.714	INTERGENIC
2L	21290168	2L_21290168_SNP [dm3] 2L_21290168_SNP [dm6]	G	A	1.454e^-4	0.714	UPSTREAM Gr39a INTRON Mio
3R	23472227	3R_23472227_SNP [dm3] 3R_27646505_SNP [dm6]	C	T	1.454e^-4	0.714	SYNONYMOUS_CODING tau	TF binding site BDTNP1_TFBS_prd
3R	23445106	3R_23445106_SNP [dm3] 3R_27619384_SNP [dm6]	C	T	1.459e^-4	0.714	INTRON Tusp
3R	13550893	3R_13550893_SNP [dm3] 3R_17725171_SNP [dm6]	C	T	1.461e^-4	0.714	UPSTREAM Lgr1 & 1 other INTERGENIC
3R	2061023	3R_2061023_SNP [dm3] 3R_6235301_SNP [dm6]	T	A	1.461e^-4	0.714	INTRON Osi6
2R	11772268	2R_11772268_SNP [dm3] 2R_15884763_SNP [dm6]	T	C	1.466e^-4	0.714	INTRON sli
3R	26634257	3R_26634257_SNP [dm3] 3R_30808535_SNP [dm6]	T	A	1.473e^-4	0.716	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	17785336	2R_17785336_SNP [dm3] 2R_21897831_SNP [dm6]	C	T	1.479e^-4	0.717	INTRON Fili
X	20571338	X_20571338_SNP [dm3] X_20700311_SNP [dm6]	A	G	1.485e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs
3R	6307620	3R_6307620_SNP [dm3] 3R_10481898_SNP [dm6]	G	T	1.490e^-4	0.717	INTERGENIC
3L	4050481	3L_4050481_INS [dm3] 3L_4050481_INS [dm6]	A	AA	1.490e^-4	0.717	INTRON CG1136	TF binding site mE1_TFBS_inv
3L	2655458	3L_2655458_SNP [dm3] 3L_2655458_SNP [dm6]	T	C	1.499e^-4	0.717	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3R	16058408	3R_16058408_SNP [dm3] 3R_20232686_SNP [dm6]	C	T	1.501e^-4	0.717	INTRON Nlg4
X	4768483	X_4768483_SNP [dm3] X_4874450_SNP [dm6]	T	A	1.512e^-4	0.717	UPSTREAM CR43495 INTRON CG42594
2L	3027804	2L_3027804_SNP [dm3] 2L_3027804_SNP [dm6]	C	T	1.519e^-4	0.717	SYNONYMOUS_CODING CG3605	TF binding site mE1_TFBS_sens
3R	22134010	3R_22134010_SNP [dm3] 3R_26308288_SNP [dm6]	G	C	1.519e^-4	0.717	INTERGENIC
2L	7504490	2L_7504490_SNP [dm3] 2L_7504490_SNP [dm6]	A	G	1.531e^-4	0.717	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	4878527	X_4878527_SNP [dm3] X_4984494_SNP [dm6]	G	A	1.543e^-4	0.717	INTRON CR44833	regulatory region REDfly_CRMs
3R	15201301	3R_15201301_SNP [dm3] 3R_19375579_SNP [dm6]	C	T	1.546e^-4	0.717	SYNONYMOUS_CODING CG31404 UPSTREAM CG3581 DOWNSTREAM CG31245 INTRON Ino80
3L	2654216	3L_2654216_SNP [dm3] 3L_2654216_SNP [dm6]	A	G	1.549e^-4	0.717	NON_SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup
3R	2025218	3R_2025218_SNP [dm3] 3R_6199496_SNP [dm6]	G	A	1.551e^-4	0.717	INTRON Osi24	TF binding site mE1_TFBS_HSA
2L	15095276	2L_15095276_SNP [dm3] 2L_15095276_SNP [dm6]	C	G	1.551e^-4	0.717	INTRON CG15270
3L	21809292	3L_21809292_SNP [dm3] 3L_21816192_SNP [dm6]	A	T	1.552e^-4	0.717	INTRON eg	TF binding site mE1_TFBS_cad
3R	1858679	3R_1858679_SNP [dm3] 3R_6032957_SNP [dm6]	A	G	1.555e^-4	0.717	INTERGENIC
X	8826116	X_8826116_SNP [dm3] X_8932083_SNP [dm6]	T	G	1.563e^-4	0.717	INTRON rdgA
3R	4862910	3R_4862910_SNP [dm3] 3R_9037188_SNP [dm6]	C	T	1.565e^-4	0.717	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5312017	3R_5312017_SNP [dm3] 3R_9486295_SNP [dm6]	C	A	1.568e^-4	0.717	INTRON CG16779
3L	4050483	3L_4050483_SNP [dm3] 3L_4050483_SNP [dm6]	A	T	1.573e^-4	0.717	INTRON CG1136	TF binding site mE1_TFBS_inv
3R	23546695	3R_23546695_SNP [dm3] 3R_27720973_SNP [dm6]	G	A	1.573e^-4	0.717	INTERGENIC
3R	23533733	3R_23533733_SNP [dm3] 3R_27708011_SNP [dm6]	T	G	1.575e^-4	0.717	SYNONYMOUS_CODING CG12877	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12568879	3L_12568879_SNP [dm3] 3L_12575779_SNP [dm6]	C	T	1.581e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	13508315	3R_13508315_SNP [dm3] 3R_17682593_SNP [dm6]	T	C	1.585e^-4	0.717	UPSTREAM CG7655 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	9159540	3L_9159540_SNP [dm3] 3L_9166440_SNP [dm6]	C	T	1.587e^-4	0.717	INTRON Rdl
2R	14146312	2R_14146312_SNP [dm3] 2R_18258807_SNP [dm6]	A	C	1.600e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15583061	3L_15583061_SNP [dm3] 3L_15589961_SNP [dm6]	G	T	1.602e^-4	0.717	SYNONYMOUS_CODING RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23536358	3R_23536358_SNP [dm3] 3R_27710636_SNP [dm6]	G	A	1.605e^-4	0.717	SYNONYMOUS_CODING CG12877
3R	22910659	3R_22910659_SNP [dm3] 3R_27084937_SNP [dm6]	T	C	1.605e^-4	0.717	INTRON Cpr97Ea
2R	6676678	2R_6676678_INS [dm3] 2R_10789173_INS [dm6]	T	TAT	1.608e^-4	0.717	INTRON CG33144
3L	8827949	3L_8827949_SNP [dm3] 3L_8834849_SNP [dm6]	A	T	1.612e^-4	0.717	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23445114	3R_23445114_SNP [dm3] 3R_27619392_SNP [dm6]	G	T	1.612e^-4	0.717	INTRON Tusp
3R	25770183	3R_25770183_SNP [dm3] 3R_29944461_SNP [dm6]	C	T	1.612e^-4	0.717	SYNONYMOUS_CODING CG15523
3R	21999683	3R_21999683_SNP [dm3] 3R_26173961_SNP [dm6]	A	T	1.612e^-4	0.717	INTRON CG31323
2R	16360935	2R_16360935_SNP [dm3] 2R_20473430_SNP [dm6]	A	T	1.613e^-4	0.717	INTRON CG12484
2L	6909953	2L_6909953_SNP [dm3] 2L_6909953_SNP [dm6]	C	A	1.619e^-4	0.717	SYNONYMOUS_CODING Rat1	TF binding site mE1_TFBS_sens
2R	5272018	2R_5272018_SNP [dm3] 2R_9384513_SNP [dm6]	C	T	1.620e^-4	0.717	INTRON CG13954
2R	3896562	2R_3896562_SNP [dm3] 2R_8009057_SNP [dm6]	C	T	1.636e^-4	0.718	UTR_3_PRIME Odc2 DOWNSTREAM CG14762
3R	1939759	3R_1939759_SNP [dm3] 3R_6114037_SNP [dm6]	T	C	1.645e^-4	0.718	INTERGENIC
X	20159074	X_20159074_SNP [dm3] X_20288047_SNP [dm6]	T	G	1.647e^-4	0.718	INTERGENIC
3R	23467932	3R_23467932_SNP [dm3] 3R_27642210_SNP [dm6]	A	G	1.653e^-4	0.718	DOWNSTREAM mir-1001 INTRON tau
2L	14476569	2L_14476569_SNP [dm3] 2L_14476569_SNP [dm6]	T	G	1.656e^-4	0.718	INTERGENIC
X	20157441	X_20157441_SNP [dm3] X_20286414_SNP [dm6]	G	A	1.656e^-4	0.718	INTERGENIC
2L	15034789	2L_15034789_SNP [dm3] 2L_15034789_SNP [dm6]	G	T	1.657e^-4	0.718	UPSTREAM yellow-c DOWNSTREAM GABA-B-R1 INTERGENIC
3R	12084354	3R_12084354_SNP [dm3] 3R_16258632_SNP [dm6]	G	A	1.657e^-4	0.718	NON_SYNONYMOUS_CODING tara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23534501	3R_23534501_SNP [dm3] 3R_27708779_SNP [dm6]	G	A	1.661e^-4	0.718	SYNONYMOUS_CODING CG12877	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9322353	3R_9322353_SNP [dm3] 3R_13496631_SNP [dm6]	C	A	1.663e^-4	0.718	INTERGENIC
3R	4873535	3R_4873535_DEL [dm3] 3R_9047813_DEL [dm6]	ACTGCT	GG	1.668e^-4	0.718	UTR_5_PRIME Rel UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	4873547	3R_4873547_DEL [dm3] 3R_9047825_DEL [dm6]	AAAAT	GG	1.668e^-4	0.718	UTR_5_PRIME Rel UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	16323492	2R_16323492_SNP [dm3] 2R_20435987_SNP [dm6]	G	A	1.694e^-4	0.722	INTRON CG12484
3R	25948732	3R_25948732_SNP [dm3] 3R_30123010_SNP [dm6]	T	C	1.695e^-4	0.722	SYNONYMOUS_CODING CG45072 DOWNSTREAM CG45073
2L	5412487	2L_5412487_SNP [dm3] 2L_5412487_SNP [dm6]	A	G	1.695e^-4	0.722	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13008725	3L_13008725_SNP [dm3] 3L_13015625_SNP [dm6]	T	C	1.712e^-4	0.722	UPSTREAM CG11267 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3R	13869643	3R_13869643_SNP [dm3] 3R_18043921_SNP [dm6]	A	C	1.716e^-4	0.722	INTERGENIC
3L	13008792	3L_13008792_SNP [dm3] 3L_13015692_SNP [dm6]	C	A	1.717e^-4	0.722	UPSTREAM CG11267 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
X	18996228	X_18996228_SNP [dm3] X_19102195_SNP [dm6]	C	T	1.719e^-4	0.722	INTERGENIC
3R	25312248	3R_25312248_SNP [dm3] 3R_29486526_SNP [dm6]	C	A	1.722e^-4	0.722	UTR_3_PRIME Ptp99A DOWNSTREAM CG2321 INTRON CG2321
2R	14277594	2R_14277594_SNP [dm3] 2R_18390089_SNP [dm6]	T	A	1.727e^-4	0.722	DOWNSTREAM CG15068 & 1 other INTRON CG15065
3R	8367135	3R_8367135_SNP [dm3] 3R_12541413_SNP [dm6]	A	T	1.734e^-4	0.722	INTRON Octbeta3R
X	15313409	X_15313409_SNP [dm3] X_15419376_SNP [dm6]	C	G	1.734e^-4	0.722	INTRON Cngl
X	15313767	X_15313767_SNP [dm3] X_15419734_SNP [dm6]	T	C	1.734e^-4	0.722	INTRON Cngl
X	15313771	X_15313771_SNP [dm3] X_15419738_SNP [dm6]	T	C	1.734e^-4	0.722	INTRON Cngl
3R	3198609	3R_3198609_SNP [dm3] 3R_7372887_SNP [dm6]	T	C	1.750e^-4	0.722	INTERGENIC
3R	3284248	3R_3284248_SNP [dm3] 3R_7458526_SNP [dm6]	C	G	1.756e^-4	0.722	INTERGENIC
2R	11048400	2R_11048400_SNP [dm3] 2R_15160895_SNP [dm6]	G	A	1.756e^-4	0.722	INTRON igl
2R	19574455	2R_19574455_SNP [dm3] 2R_23686932_SNP [dm6]	G	A	1.757e^-4	0.722	INTRON St3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6174585	2L_6174585_SNP [dm3] 2L_6174585_SNP [dm6]	G	T	1.765e^-4	0.722	INTERGENIC
3L	19197501	3L_19197501_SNP [dm3] 3L_19204401_SNP [dm6]	A	T	1.767e^-4	0.722	INTRON fz2
3R	20439618	3R_20439618_SNP [dm3] 3R_24613896_SNP [dm6]	G	A	1.769e^-4	0.722	INTRON mld
X	21867037	X_21867037_SNP [dm3] X_22465201_SNP [dm6]	C	A	1.771e^-4	0.722	SYNONYMOUS_CODING CG14619 INTRON CG14619
X	12155878	X_12155878_DEL [dm3] X_12261845_DEL [dm6]	TCC	T	1.776e^-4	0.722	INTRON Ten-a
X	21097717	X_21097717_SNP [dm3] X_21226690_SNP [dm6]	T	G	1.782e^-4	0.722	INTRON CG32521	TF binding site BDTNP1_TFBS_dl
3L	3527904	3L_3527904_SNP [dm3] 3L_3527904_SNP [dm6]	C	T	1.785e^-4	0.722	INTRON Eip63E
3R	3266172	3R_3266172_SNP [dm3] 3R_7440450_SNP [dm6]	T	G	1.795e^-4	0.722	INTRON CG14598
3R	25980404	3R_25980404_SNP [dm3] 3R_30154682_SNP [dm6]	G	A	1.801e^-4	0.722	INTRON CG11498	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad
2L	16674618	2L_16674618_SNP [dm3] 2L_16674618_SNP [dm6]	A	G	1.806e^-4	0.722	INTRON Trpgamma
2R	16848078	2R_16848078_SNP [dm3] 2R_20960573_SNP [dm6]	C	T	1.808e^-4	0.722	SYNONYMOUS_CODING hbn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18215312	3L_18215312_INS [dm3] 3L_18222212_INS [dm6]	A	AGCG	1.814e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17712742	X_17712742_SNP [dm3] X_17818709_SNP [dm6]	C	A	1.834e^-4	0.722	DOWNSTREAM CG12986 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	1859536	3R_1859536_SNP [dm3] 3R_6033814_SNP [dm6]	G	T	1.838e^-4	0.722	INTERGENIC
X	10387711	X_10387711_SNP [dm3] X_10493678_SNP [dm6]	A	T	1.843e^-4	0.722	UTR_5_PRIME spri INTRON spri	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18608381	2R_18608381_SNP [dm3] 2R_22720876_SNP [dm6]	T	C	1.847e^-4	0.722	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26513130	3R_26513130_SNP [dm3] 3R_30687408_SNP [dm6]	G	A	1.849e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15151190	3R_15151190_SNP [dm3] 3R_19325468_SNP [dm6]	G	C	1.855e^-4	0.722	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	4768484	X_4768484_INS [dm3] X_4874451_INS [dm6]	A	AC	1.860e^-4	0.722	UPSTREAM CR43495 INTRON CG42594
3R	23604540	3R_23604540_SNP [dm3] 3R_27778818_SNP [dm6]	C	A	1.869e^-4	0.722	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2L	14376264	2L_14376264_SNP [dm3] 2L_14376264_SNP [dm6]	G	C	1.871e^-4	0.722	INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	6832974	3R_6832974_SNP [dm3] 3R_11007252_SNP [dm6]	G	A	1.873e^-4	0.722	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	6836567	3R_6836567_SNP [dm3] 3R_11010845_SNP [dm6]	A	G	1.873e^-4	0.722	INTRON CG34114
3R	25319672	3R_25319672_SNP [dm3] 3R_29493950_SNP [dm6]	G	T	1.876e^-4	0.722	SYNONYMOUS_CODING Diedel UPSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	16558991	3L_16558991_SNP [dm3] 3L_16565891_SNP [dm6]	C	G	1.878e^-4	0.722	UPSTREAM CG43206 INTRON Mipp1
2R	18699481	2R_18699481_SNP [dm3] 2R_22811976_SNP [dm6]	G	T	1.879e^-4	0.722	INTRON stl	TF binding site mE1_TFBS_chinmo
3R	25912909	3R_25912909_SNP [dm3] 3R_30087187_SNP [dm6]	C	T	1.880e^-4	0.722	INTRON sima
3R	26512832	3R_26512832_SNP [dm3] 3R_30687110_SNP [dm6]	T	C	1.880e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16549315	3L_16549315_INS [dm3] 3L_16556215_INS [dm6]	T	TGT	1.883e^-4	0.722	UPSTREAM CG4229 INTERGENIC
3R	6312926	3R_6312926_SNP [dm3] 3R_10487204_SNP [dm6]	G	C	1.887e^-4	0.722	INTERGENIC
3L	4794546	3L_4794546_SNP [dm3] 3L_4794546_SNP [dm6]	G	T	1.888e^-4	0.722	INTRON RhoGEF64C
2R	18328319	2R_18328319_SNP [dm3] 2R_22440814_SNP [dm6]	T	C	1.892e^-4	0.722	INTERGENIC
3L	19197460	3L_19197460_SNP [dm3] 3L_19204360_SNP [dm6]	A	C	1.893e^-4	0.722	INTRON fz2
3L	17077869	3L_17077869_SNP [dm3] 3L_17084769_SNP [dm6]	T	C	1.899e^-4	0.722	INTRON Rbp6
X	4553491	X_4553491_SNP [dm3] X_4659458_SNP [dm6]	G	A	1.899e^-4	0.722	SYNONYMOUS_CODING CG3009 INTRON CG3009	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	27459360	3R_27459360_SNP [dm3] 3R_31633638_SNP [dm6]	G	C	1.900e^-4	0.722	INTRON kek6
3R	23557766	3R_23557766_SNP [dm3] 3R_27732044_SNP [dm6]	C	T	1.901e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25319465	3R_25319465_SNP [dm3] 3R_29493743_SNP [dm6]	A	G	1.902e^-4	0.722	UPSTREAM Diedel & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10246982	3L_10246982_SNP [dm3] 3L_10253882_SNP [dm6]	G	A	1.905e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9662387	3L_9662387_SNP [dm3] 3L_9669287_SNP [dm6]	A	G	1.912e^-4	0.722	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
2R	9006458	2R_9006458_SNP [dm3] 2R_13118953_SNP [dm6]	C	A	1.919e^-4	0.722	INTRON CG13325
2L	15072654	2L_15072654_SNP [dm3] 2L_15072654_SNP [dm6]	G	T	1.921e^-4	0.722	DOWNSTREAM vas INTRON vas
3R	23550832	3R_23550832_SNP [dm3] 3R_27725110_SNP [dm6]	C	A	1.937e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23497987	3R_23497987_SNP [dm3] 3R_27672265_SNP [dm6]	C	T	1.938e^-4	0.722	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16573649	2L_16573649_SNP [dm3] 2L_16573649_SNP [dm6]	C	A	1.940e^-4	0.722	INTRON CG42389
3R	26848424	3R_26848424_SNP [dm3] 3R_31022702_SNP [dm6]	A	T	1.940e^-4	0.722	INTERGENIC
X	19398047	X_19398047_DEL [dm3] X_19504014_DEL [dm6]	GT	G	1.944e^-4	0.722	UPSTREAM Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25734485	3R_25734485_SNP [dm3] 3R_29908763_SNP [dm6]	G	A	1.948e^-4	0.722	INTRON CG31036
X	13291244	X_13291244_SNP [dm3] X_13397211_SNP [dm6]	C	A	1.949e^-4	0.722	UTR_5_PRIME CG1673 DOWNSTREAM CR44621	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25734502	3R_25734502_SNP [dm3] 3R_29908780_SNP [dm6]	A	T	1.949e^-4	0.722	INTRON CG31036
X	20396997	X_20396997_DEL [dm3] X_20525970_DEL [dm6]	TA	T	1.953e^-4	0.722	INTERGENIC	transposable element FlyBase
2R	18452664	2R_18452664_SNP [dm3] 2R_22565159_SNP [dm6]	C	G	1.955e^-4	0.722	INTRON dnr1	TF binding site mE1_TFBS_HSA
3R	15741150	3R_15741150_SNP [dm3] 3R_19915428_SNP [dm6]	C	G	1.955e^-4	0.722	UPSTREAM Xport & 1 other DOWNSTREAM CG4465 INTERGENIC
3R	25624137	3R_25624137_SNP [dm3] 3R_29798415_SNP [dm6]	G	A	1.959e^-4	0.722	SYNONYMOUS_CODING CG7837	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6289589	3R_6289589_SNP [dm3] 3R_10463867_SNP [dm6]	T	G	1.963e^-4	0.722	EXON CR44955
3R	15151196	3R_15151196_SNP [dm3] 3R_19325474_SNP [dm6]	A	T	1.965e^-4	0.722	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10266166	3L_10266166_SNP [dm3] 3L_10273066_SNP [dm6]	C	T	1.970e^-4	0.722	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3R	2841407	3R_2841407_SNP [dm3] 3R_7015685_SNP [dm6]	G	T	1.977e^-4	0.722	INTERGENIC
3L	6303039	3L_6303039_SNP [dm3] 3L_6309939_SNP [dm6]	A	G	1.978e^-4	0.722	INTERGENIC
2L	18417852	2L_18417852_SNP [dm3] 2L_18417852_SNP [dm6]	G	C	1.986e^-4	0.722	INTERGENIC
3L	18470932	3L_18470932_SNP [dm3] 3L_18477832_SNP [dm6]	T	C	1.997e^-4	0.722	UPSTREAM CR44673 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	7323218	2R_7323218_SNP [dm3] 2R_11435713_SNP [dm6]	T	C	1.999e^-4	0.722	UPSTREAM CG7777 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
2R	6799140	2R_6799140_SNP [dm3] 2R_10911635_SNP [dm6]	G	A	2.000e^-4	0.722	INTERGENIC
3R	9631339	3R_9631339_SNP [dm3] 3R_13805617_SNP [dm6]	A	G	2.005e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18895823	2R_18895823_INS [dm3] 2R_23008300_INS [dm6]	A	ACATACATA	2.005e^-4	0.722	INTRON twi	TF binding site mE1_TFBS_chinmo
3R	4667510	3R_4667510_SNP [dm3] 3R_8841788_SNP [dm6]	T	A	2.014e^-4	0.722	INTRON pyd	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20149989	X_20149989_SNP [dm3] X_20278963_SNP [dm6]	C	T	2.015e^-4	0.722	INTERGENIC
2R	8658387	2R_8658387_SNP [dm3] 2R_12770882_SNP [dm6]	A	G	2.015e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	18915279	3R_18915279_SNP [dm3] 3R_23089557_SNP [dm6]	C	T	2.028e^-4	0.722	INTRON CG13830
3R	26087341	3R_26087341_SNP [dm3] 3R_30261619_SNP [dm6]	A	T	2.031e^-4	0.722	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	11593345	3R_11593345_SNP [dm3] 3R_15767623_SNP [dm6]	A	G	2.034e^-4	0.722	UPSTREAM CG5623 INTERGENIC
2L	16246938	2L_16246938_DEL [dm3] 2L_16246938_DEL [dm6]	TAGTT	T	2.038e^-4	0.722	UTR_3_PRIME PRL-1
3R	23467876	3R_23467876_SNP [dm3] 3R_27642154_SNP [dm6]	T	A	2.042e^-4	0.722	DOWNSTREAM mir-1001 INTRON tau
X	19301615	X_19301615_SNP [dm3] X_19407582_SNP [dm6]	A	C	2.056e^-4	0.722	INTRON kek5
3L	17063841	3L_17063841_SNP [dm3] 3L_17070741_SNP [dm6]	C	T	2.057e^-4	0.722	UTR_3_PRIME Rbp6 INTRON Rbp6
3R	22139687	3R_22139687_SNP [dm3] 3R_26313965_SNP [dm6]	G	A	2.058e^-4	0.722	INTERGENIC
3R	10871002	3R_10871002_SNP [dm3] 3R_15045280_SNP [dm6]	C	T	2.062e^-4	0.722	INTERGENIC
3L	10680046	3L_10680046_SNP [dm3] 3L_10686946_SNP [dm6]	T	C	2.063e^-4	0.722	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7294751	2R_7294751_SNP [dm3] 2R_11407246_SNP [dm6]	G	C	2.066e^-4	0.722	NON_SYNONYMOUS_CODING CG7759
X	19387023	X_19387023_SNP [dm3] X_19492990_SNP [dm6]	G	T	2.067e^-4	0.722	NON_SYNONYMOUS_CODING CG12203 UPSTREAM pcm DOWNSTREAM CG12204	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16551859	3L_16551859_SNP [dm3] 3L_16558759_SNP [dm6]	C	T	2.083e^-4	0.722	DOWNSTREAM CG4229 INTERGENIC
2L	9203112	2L_9203112_INS [dm3] 2L_9203112_INS [dm6]	G	GCA	2.087e^-4	0.722	INTRON tai	TF binding site mE1_TFBS_Trl
3L	18470955	3L_18470955_SNP [dm3] 3L_18477855_SNP [dm6]	C	T	2.093e^-4	0.722	UPSTREAM CR44673 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	2137102	3R_2137102_SNP [dm3] 3R_6311380_SNP [dm6]	A	T	2.099e^-4	0.722	UPSTREAM Osi17 DOWNSTREAM CG31560 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12626326	3L_12626326_SNP [dm3] 3L_12633226_SNP [dm6]	A	T	2.103e^-4	0.722	INTRON CR32111	TF binding site mE1_TFBS_cad
2L	12157189	2L_12157189_SNP [dm3] 2L_12157189_SNP [dm6]	A	C	2.111e^-4	0.722	INTRON CG31760
3L	8078163	3L_8078163_SNP [dm3] 3L_8085063_SNP [dm6]	G	T	2.114e^-4	0.722	INTRON Ect4
3L	4797139	3L_4797139_SNP [dm3] 3L_4797139_SNP [dm6]	G	T	2.117e^-4	0.722	DOWNSTREAM RhoGEF64C INTERGENIC
2L	8372639	2L_8372639_SNP [dm3] 2L_8372639_SNP [dm6]	C	T	2.117e^-4	0.722	INTRON CG17292
3R	25899250	3R_25899250_SNP [dm3] 3R_30073528_SNP [dm6]	A	G	2.120e^-4	0.722	INTRON sima	TF binding site mE1_TFBS_chinmo
2L	8077654	2L_8077654_SNP [dm3] 2L_8077654_SNP [dm6]	A	G	2.124e^-4	0.722	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
2R	14277589	2R_14277589_SNP [dm3] 2R_18390084_SNP [dm6]	T	C	2.131e^-4	0.722	DOWNSTREAM CG15068 & 1 other INTRON CG15065
3R	3482214	3R_3482214_SNP [dm3] 3R_7656492_SNP [dm6]	G	C	2.132e^-4	0.722	INTERGENIC
2R	6831064	2R_6831064_SNP [dm3] 2R_10943559_SNP [dm6]	C	A	2.132e^-4	0.722	INTERGENIC
3R	23126717	3R_23126717_SNP [dm3] 3R_27300995_SNP [dm6]	A	T	2.134e^-4	0.722	INTRON CG3339	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	20477209	X_20477209_SNP [dm3] X_20606182_SNP [dm6]	G	A	2.142e^-4	0.722	INTRON RunxA
2L	6911156	2L_6911156_SNP [dm3] 2L_6911156_SNP [dm6]	G	T	2.146e^-4	0.722	UTR_3_PRIME Rat1 & 1 other DOWNSTREAM Wee1 & 1 other
2R	15930251	2R_15930251_SNP [dm3] 2R_20042746_SNP [dm6]	C	T	2.151e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	4565617	3L_4565617_SNP [dm3] 3L_4565617_SNP [dm6]	C	A	2.172e^-4	0.722	INTRON CG42540	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	1724705	3R_1724705_SNP [dm3] 3R_5898983_SNP [dm6]	T	C	2.173e^-4	0.722	INTRON CG34113
3R	1901484	3R_1901484_SNP [dm3] 3R_6075762_SNP [dm6]	T	C	2.180e^-4	0.722	INTERGENIC
3L	16478694	3L_16478694_SNP [dm3] 3L_16485594_SNP [dm6]	T	C	2.195e^-4	0.722	SYNONYMOUS_CODING CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16478712	3L_16478712_SNP [dm3] 3L_16485612_SNP [dm6]	C	T	2.195e^-4	0.722	SYNONYMOUS_CODING CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13647569	3R_13647569_SNP [dm3] 3R_17821847_SNP [dm6]	A	G	2.195e^-4	0.722	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	2654176	3L_2654176_SNP [dm3] 3L_2654176_SNP [dm6]	C	T	2.196e^-4	0.722	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup
2L	9203234	2L_9203234_SNP [dm3] 2L_9203234_SNP [dm6]	G	A	2.200e^-4	0.722	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	20141086	X_20141086_SNP [dm3] X_20270060_SNP [dm6]	G	A	2.201e^-4	0.722	UPSTREAM Inx6 INTERGENIC
3R	23472028	3R_23472028_SNP [dm3] 3R_27646306_SNP [dm6]	A	G	2.204e^-4	0.722	INTRON tau	TF binding site BDTNP1_TFBS_prd
X	14720183	X_14720183_SNP [dm3] X_14826150_SNP [dm6]	C	T	2.214e^-4	0.722	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23501319	3R_23501319_SNP [dm3] 3R_27675597_SNP [dm6]	C	A	2.219e^-4	0.722	INTRON unc80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23503365	3R_23503365_SNP [dm3] 3R_27677643_SNP [dm6]	A	G	2.219e^-4	0.722	UTR_5_PRIME CG5590 DOWNSTREAM unc80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
X	8055439	X_8055439_SNP [dm3] X_8161406_SNP [dm6]	A	G	2.221e^-4	0.722	UTR_3_PRIME CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8055443	X_8055443_INS [dm3] X_8161410_INS [dm6]	T	TTAG	2.221e^-4	0.722	UTR_3_PRIME CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4797525	3L_4797525_SNP [dm3] 3L_4797525_SNP [dm6]	C	G	2.223e^-4	0.722	INTERGENIC
3R	1940087	3R_1940087_SNP [dm3] 3R_6114365_SNP [dm6]	T	C	2.225e^-4	0.722	INTERGENIC
3R	21068205	3R_21068205_SNP [dm3] 3R_25242483_SNP [dm6]	T	A	2.231e^-4	0.722	DOWNSTREAM to & 1 other INTRON CG11854
2L	11980270	2L_11980270_DEL [dm3] 2L_11980270_DEL [dm6]	TCAT	T	2.232e^-4	0.722	INTERGENIC
3R	3266261	3R_3266261_DEL [dm3] 3R_7440539_DEL [dm6]	ACAATAGAGCCATAACTTTA...	A	2.234e^-4	0.722	INTRON CG14598
2L	2708000	2L_2708000_SNP [dm3] 2L_2708000_SNP [dm6]	A	T	2.237e^-4	0.722	INTRON CG31690
2L	10727402	2L_10727402_SNP [dm3] 2L_10727402_SNP [dm6]	A	T	2.238e^-4	0.722	INTRON CG6431
2L	7888658	2L_7888658_SNP [dm3] 2L_7888658_SNP [dm6]	C	A	2.238e^-4	0.722	NON_SYNONYMOUS_CODING Spn28Da DOWNSTREAM Spn28Db	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5796953	2L_5796953_SNP [dm3] 2L_5796953_SNP [dm6]	G	A	2.240e^-4	0.722	INTRON CG9171
3L	13796608	3L_13796608_SNP [dm3] 3L_13803508_SNP [dm6]	T	A	2.241e^-4	0.722	UPSTREAM bru-3 INTERGENIC
3R	10107824	3R_10107824_SNP [dm3] 3R_14282102_SNP [dm6]	G	A	2.245e^-4	0.722	INTRON trx	TF binding site BDTNP1_TFBS_dl
2L	940272	2L_940272_SNP [dm3] 2L_940272_SNP [dm6]	A	G	2.249e^-4	0.722	INTRON CG4341
3L	18957213	3L_18957213_SNP [dm3] 3L_18964113_SNP [dm6]	A	G	2.252e^-4	0.722	INTERGENIC
3R	23534084	3R_23534084_SNP [dm3] 3R_27708362_SNP [dm6]	G	A	2.252e^-4	0.722	SYNONYMOUS_CODING CG12877	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7491822	2L_7491822_SNP [dm3] 2L_7491822_SNP [dm6]	G	T	2.254e^-4	0.722	INTRON Ziz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	7323426	2R_7323426_SNP [dm3] 2R_11435921_SNP [dm6]	G	A	2.259e^-4	0.722	UPSTREAM CG7777 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
X	11194902	X_11194902_SNP [dm3] X_11300869_SNP [dm6]	C	T	2.262e^-4	0.722	INTRON CG44422
3R	26940968	3R_26940968_SNP [dm3] 3R_31115246_SNP [dm6]	C	A	2.263e^-4	0.722	INTERGENIC
3R	16132866	3R_16132866_SNP [dm3] 3R_20307144_SNP [dm6]	G	A	2.269e^-4	0.722	INTRON CG4362	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4794525	3L_4794525_SNP [dm3] 3L_4794525_SNP [dm6]	A	G	2.269e^-4	0.722	INTRON RhoGEF64C
3R	3238001	3R_3238001_INS [dm3] 3R_7412279_INS [dm6]	C	CATGCAATC	2.273e^-4	0.722	INTERGENIC
3R	1663506	3R_1663506_SNP [dm3] 3R_5837784_SNP [dm6]	T	C	2.279e^-4	0.722	NON_SYNONYMOUS_CODING CG1208	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4876246	3R_4876246_SNP [dm3] 3R_9050524_SNP [dm6]	G	A	2.281e^-4	0.722	UTR_5_PRIME Nmdmc UPSTREAM Mst85C INTRON Mst85C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	4298330	2L_4298330_SNP [dm3] 2L_4298330_SNP [dm6]	T	A	2.286e^-4	0.722	INTRON tutl
X	9239208	X_9239208_SNP [dm3] X_9345175_SNP [dm6]	A	C	2.286e^-4	0.722	INTRON CG34449
3R	22571450	3R_22571450_SNP [dm3] 3R_26745728_SNP [dm6]	C	T	2.293e^-4	0.722	INTERGENIC
3R	8368893	3R_8368893_SNP [dm3] 3R_12543171_SNP [dm6]	T	A	2.298e^-4	0.722	INTRON Octbeta3R
2L	16835199	2L_16835199_SNP [dm3] 2L_16835199_SNP [dm6]	T	C	2.299e^-4	0.722	UTR_3_PRIME CG13283 UPSTREAM CG13282
3R	10107842	3R_10107842_MNP [dm3] 3R_14282120_MNP [dm6]	CAGG	TTCA	2.302e^-4	0.722	INTRON trx	TF binding site BDTNP1_TFBS_dl
X	8055448	X_8055448_SNP [dm3] X_8161415_SNP [dm6]	A	C	2.306e^-4	0.722	UTR_3_PRIME CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14363534	2L_14363534_SNP [dm3] 2L_14363534_SNP [dm6]	T	C	2.310e^-4	0.722	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4997281	2L_4997281_SNP [dm3] 2L_4997281_SNP [dm6]	A	G	2.311e^-4	0.722	UTR_5_PRIME Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	4069529	3R_4069529_SNP [dm3] 3R_8243807_SNP [dm6]	C	G	2.312e^-4	0.722	UPSTREAM CG33722 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
3R	22003978	3R_22003978_SNP [dm3] 3R_26178256_SNP [dm6]	C	T	2.312e^-4	0.722	INTRON CG31323
3R	19764662	3R_19764662_SNP [dm3] 3R_23938940_SNP [dm6]	A	G	2.317e^-4	0.722	UPSTREAM Gdh INTRON Gdh
3L	13008839	3L_13008839_SNP [dm3] 3L_13015739_SNP [dm6]	A	T	2.318e^-4	0.722	UPSTREAM CG11267 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	15077443	3L_15077443_SNP [dm3] 3L_15084343_SNP [dm6]	A	G	2.329e^-4	0.722	SYNONYMOUS_CODING cp309 UTR_5_PRIME cp309	TF binding site mE1_TFBS_cad
2L	15051485	2L_15051485_SNP [dm3] 2L_15051485_SNP [dm6]	A	G	2.335e^-4	0.722	INTRON ck	regulatory region REDfly_CRMs
3L	14552633	3L_14552633_SNP [dm3] 3L_14559533_SNP [dm6]	G	A	2.336e^-4	0.722	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC
2L	15889543	2L_15889543_SNP [dm3] 2L_15889543_SNP [dm6]	G	A	2.339e^-4	0.722	NON_SYNONYMOUS_CODING Tep1 DOWNSTREAM CR31824
3R	15300611	3R_15300611_SNP [dm3] 3R_19474889_SNP [dm6]	T	C	2.341e^-4	0.722	INTRON Dys
3L	896366	3L_896366_SNP [dm3] 3L_896366_SNP [dm6]	A	G	2.341e^-4	0.722	SYNONYMOUS_CODING CG34056
3R	25905615	3R_25905615_SNP [dm3] 3R_30079893_SNP [dm6]	T	A	2.354e^-4	0.722	INTRON sima
3R	23445041	3R_23445041_SNP [dm3] 3R_27619319_SNP [dm6]	C	T	2.359e^-4	0.722	INTRON Tusp
3R	19782828	3R_19782828_SNP [dm3] 3R_23957106_SNP [dm6]	T	A	2.362e^-4	0.722	INTRON Aats-glupro	TF binding site mE1_TFBS_cad
2L	9877431	2L_9877431_SNP [dm3] 2L_9877431_SNP [dm6]	C	A	2.370e^-4	0.722	UTR_5_PRIME nAChRalpha6 INTRON nAChRalpha6
2R	4413736	2R_4413736_SNP [dm3] 2R_8526231_SNP [dm6]	G	A	2.371e^-4	0.722	INTRON mtt	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25914597	3R_25914597_SNP [dm3] 3R_30088875_SNP [dm6]	A	G	2.382e^-4	0.722	INTRON sima
3R	20194163	3R_20194163_SNP [dm3] 3R_24368441_SNP [dm6]	T	G	2.387e^-4	0.722	NON_SYNONYMOUS_CODING CG33341 UPSTREAM CG42812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3517199	3R_3517199_SNP [dm3] 3R_7691477_SNP [dm6]	C	G	2.388e^-4	0.722	INTRON Nlg1
3L	11442631	3L_11442631_SNP [dm3] 3L_11449531_SNP [dm6]	T	G	2.393e^-4	0.722	INTERGENIC
2R	16871166	2R_16871166_SNP [dm3] 2R_20983661_SNP [dm6]	G	C	2.393e^-4	0.722	SYNONYMOUS_CODING CG9313 DOWNSTREAM CG15651
3R	12083996	3R_12083996_SNP [dm3] 3R_16258274_SNP [dm6]	G	A	2.401e^-4	0.722	SYNONYMOUS_CODING tara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26090778	3R_26090778_SNP [dm3] 3R_30265056_SNP [dm6]	C	G	2.401e^-4	0.722	INTERGENIC	silencer mE1_HDAC_PRE
2R	19553785	2R_19553785_INS [dm3] 2R_23666262_INS [dm6]	A	AATACCTCAA	2.405e^-4	0.722	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3895681	X_3895681_SNP [dm3] X_4001648_SNP [dm6]	T	A	2.408e^-4	0.722	UPSTREAM CR43298 INTERGENIC
3R	15119244	3R_15119244_SNP [dm3] 3R_19293522_SNP [dm6]	A	G	2.409e^-4	0.722	INTERGENIC
3R	1891625	3R_1891625_SNP [dm3] 3R_6065903_SNP [dm6]	A	G	2.416e^-4	0.722	INTERGENIC
3L	16460471	3L_16460471_SNP [dm3] 3L_16467371_SNP [dm6]	G	A	2.422e^-4	0.722	INTRON CG33158
3L	13338358	3L_13338358_SNP [dm3] 3L_13345258_SNP [dm6]	A	G	2.429e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	19511977	3L_19511977_SNP [dm3] 3L_19518877_SNP [dm6]	T	A	2.430e^-4	0.722	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3R	1890677	3R_1890677_SNP [dm3] 3R_6064955_SNP [dm6]	A	G	2.430e^-4	0.722	INTERGENIC
3L	16550997	3L_16550997_SNP [dm3] 3L_16557897_SNP [dm6]	T	C	2.433e^-4	0.722	UTR_3_PRIME CG4229	TF binding site mE1_TFBS_cad
3L	4041177	3L_4041177_SNP [dm3] 3L_4041177_SNP [dm6]	T	G	2.434e^-4	0.722	SYNONYMOUS_CODING Rcd5 UPSTREAM CG11593	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17262576	2L_17262576_INS [dm3] 2L_17262576_INS [dm6]	A	AA	2.435e^-4	0.722	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	8055296	X_8055296_SNP [dm3] X_8161263_SNP [dm6]	T	C	2.439e^-4	0.722	NON_SYNONYMOUS_CODING CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25622994	3R_25622994_SNP [dm3] 3R_29797272_SNP [dm6]	C	A	2.440e^-4	0.722	SYNONYMOUS_CODING CG7837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26962794	3R_26962794_SNP [dm3] 3R_31137072_SNP [dm6]	G	A	2.441e^-4	0.722	INTRON Gycbeta100B
3R	23502673	3R_23502673_SNP [dm3] 3R_27676951_SNP [dm6]	A	C	2.443e^-4	0.722	UTR_3_PRIME unc80 UPSTREAM CG5590	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_h mE1_TFBS_HSA
3R	10697996	3R_10697996_SNP [dm3] 3R_14872274_SNP [dm6]	G	T	2.447e^-4	0.722	INTRON btsz
3R	26090782	3R_26090782_SNP [dm3] 3R_30265060_SNP [dm6]	A	T	2.461e^-4	0.725	INTERGENIC	silencer mE1_HDAC_PRE
3R	15151178	3R_15151178_SNP [dm3] 3R_19325456_SNP [dm6]	G	A	2.467e^-4	0.725	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4351311	2L_4351311_SNP [dm3] 2L_4351311_SNP [dm6]	C	T	2.470e^-4	0.725	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16167027	3L_16167027_SNP [dm3] 3L_16173927_SNP [dm6]	A	G	2.472e^-4	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19779563	X_19779563_INS [dm3] X_19885530_INS [dm6]	C	CC	2.479e^-4	0.725	DOWNSTREAM amn INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7321410	3R_7321410_SNP [dm3] 3R_11495688_SNP [dm6]	G	A	2.481e^-4	0.725	INTERGENIC
3L	7822678	3L_7822678_SNP [dm3] 3L_7829578_SNP [dm6]	G	A	2.491e^-4	0.725	INTRON Pdp1
3R	12960058	3R_12960058_SNP [dm3] 3R_17134336_SNP [dm6]	T	C	2.494e^-4	0.725	SYNONYMOUS_CODING CG31267 DOWNSTREAM CG31266
2L	4652279	2L_4652279_SNP [dm3] 2L_4652279_SNP [dm6]	T	G	2.494e^-4	0.725	UTR_3_PRIME CG3355 INTRON CG3355	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11055236	3R_11055236_SNP [dm3] 3R_15229514_SNP [dm6]	C	G	2.509e^-4	0.727	UPSTREAM mRpS10 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	8067112	2L_8067112_SNP [dm3] 2L_8067112_SNP [dm6]	G	A	2.516e^-4	0.727	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
3L	10935902	3L_10935902_SNP [dm3] 3L_10942802_SNP [dm6]	C	T	2.518e^-4	0.727	INTERGENIC
3R	23539151	3R_23539151_SNP [dm3] 3R_27713429_SNP [dm6]	C	T	2.520e^-4	0.727	INTERGENIC
3L	3526512	3L_3526512_SNP [dm3] 3L_3526512_SNP [dm6]	A	G	2.523e^-4	0.727	INTRON Eip63E
3L	1863849	3L_1863849_SNP [dm3] 3L_1863849_SNP [dm6]	G	A	2.543e^-4	0.727	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	1863863	3L_1863863_SNP [dm3] 3L_1863863_SNP [dm6]	G	A	2.543e^-4	0.727	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	15089763	2L_15089763_SNP [dm3] 2L_15089763_SNP [dm6]	G	A	2.543e^-4	0.727	INTRON CG15270
3L	18360996	3L_18360996_SNP [dm3] 3L_18367896_SNP [dm6]	C	T	2.544e^-4	0.727	INTERGENIC
2L	8380717	2L_8380717_SNP [dm3] 2L_8380717_SNP [dm6]	A	G	2.548e^-4	0.727	SYNONYMOUS_CODING Aats-ala	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	8512688	X_8512688_SNP [dm3] X_8618655_SNP [dm6]	G	A	2.549e^-4	0.727	INTERGENIC	regulatory region REDfly_CRMs
3R	25319631	3R_25319631_SNP [dm3] 3R_29493909_SNP [dm6]	G	C	2.550e^-4	0.727	NON_SYNONYMOUS_CODING Diedel UPSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	8472399	3R_8472399_SNP [dm3] 3R_12646677_SNP [dm6]	T	A	2.561e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10742993	2L_10742993_SNP [dm3] 2L_10742993_SNP [dm6]	C	T	2.563e^-4	0.727	SYNONYMOUS_CODING CG6729	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	13291589	X_13291589_SNP [dm3] X_13397556_SNP [dm6]	A	G	2.564e^-4	0.727	INTRON CG1673	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4794521	3L_4794521_SNP [dm3] 3L_4794521_SNP [dm6]	A	C	2.568e^-4	0.727	INTRON RhoGEF64C
2R	14871231	2R_14871231_SNP [dm3] 2R_18983726_SNP [dm6]	C	G	2.573e^-4	0.727	INTERGENIC
3L	3874929	3L_3874929_SNP [dm3] 3L_3874929_SNP [dm6]	G	C	2.574e^-4	0.727	INTERGENIC
3R	22004032	3R_22004032_SNP [dm3] 3R_26178310_SNP [dm6]	G	C	2.580e^-4	0.727	INTRON CG31323
3R	14287658	3R_14287658_SNP [dm3] 3R_18461936_SNP [dm6]	A	T	2.581e^-4	0.727	INTRON fru
X	20149961	X_20149961_SNP [dm3] X_20278935_SNP [dm6]	A	C	2.589e^-4	0.727	INTERGENIC
3R	23477000	3R_23477000_SNP [dm3] 3R_27651278_SNP [dm6]	G	T	2.597e^-4	0.727	UTR_3_PRIME tau UPSTREAM tau INTRON tau
2R	6754203	2R_6754203_SNP [dm3] 2R_10866698_SNP [dm6]	A	C	2.598e^-4	0.727	INTRON CG30015
X	18996218	X_18996218_SNP [dm3] X_19102185_SNP [dm6]	G	A	2.599e^-4	0.727	INTERGENIC
3R	5492523	3R_5492523_SNP [dm3] 3R_9666801_SNP [dm6]	G	T	2.599e^-4	0.727	SYNONYMOUS_CODING CG9492	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8065711	X_8065711_SNP [dm3] X_8171678_SNP [dm6]	A	G	2.604e^-4	0.727	SYNONYMOUS_CODING slpr
3R	13021134	3R_13021134_SNP [dm3] 3R_17195412_SNP [dm6]	A	C	2.605e^-4	0.727	INTRON Mur89F
2L	521349	2L_521349_INS [dm3] 2L_521349_INS [dm6]	G	GGAAG	2.608e^-4	0.727	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	16132769	3R_16132769_SNP [dm3] 3R_20307047_SNP [dm6]	G	A	2.611e^-4	0.727	INTRON CG4362	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5676931	2L_5676931_SNP [dm3] 2L_5676931_SNP [dm6]	A	G	2.615e^-4	0.727	INTERGENIC
X	8055446	X_8055446_SNP [dm3] X_8161413_SNP [dm6]	A	T	2.627e^-4	0.728	UTR_3_PRIME CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4768451	X_4768451_SNP [dm3] X_4874418_SNP [dm6]	A	G	2.629e^-4	0.728	UPSTREAM CR43495 INTRON CG42594
3L	16797469	3L_16797469_SNP [dm3] 3L_16804369_SNP [dm6]	A	G	2.648e^-4	0.732	UPSTREAM nudC INTRON CG9674	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10107827	3R_10107827_SNP [dm3] 3R_14282105_SNP [dm6]	T	A	2.655e^-4	0.732	INTRON trx	TF binding site BDTNP1_TFBS_dl
3R	3214943	3R_3214943_SNP [dm3] 3R_7389221_SNP [dm6]	C	T	2.657e^-4	0.732	DOWNSTREAM CR45560 INTERGENIC
3R	13508131	3R_13508131_DEL [dm3] 3R_17682409_DEL [dm6]	TGTTAAACTTTT...	T	2.659e^-4	0.732	UTR_5_PRIME alt UPSTREAM CG7655 & 1 other INTRON alt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3928752	X_3928752_DEL [dm3] X_4034719_DEL [dm6]	CC	C	2.666e^-4	0.732	INTERGENIC
2L	6550611	2L_6550611_SNP [dm3] 2L_6550611_SNP [dm6]	G	A	2.673e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	21294101	2L_21294101_SNP [dm3] 2L_21294101_SNP [dm6]	T	A	2.674e^-4	0.732	UPSTREAM Gr39a INTRON Mio & 1 other	TF binding site BDTNP1_TFBS_dl
2R	7482658	2R_7482658_SNP [dm3] 2R_11595153_SNP [dm6]	G	A	2.676e^-4	0.732	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
X	20141210	X_20141210_SNP [dm3] X_20270184_SNP [dm6]	T	A	2.684e^-4	0.732	UPSTREAM Inx6 INTERGENIC
X	14518170	X_14518170_SNP [dm3] X_14624137_SNP [dm6]	A	T	2.697e^-4	0.732	INTRON NetA
3R	22126410	3R_22126410_SNP [dm3] 3R_26300688_SNP [dm6]	T	A	2.699e^-4	0.732	INTERGENIC
3L	3293496	3L_3293496_SNP [dm3] 3L_3293496_SNP [dm6]	T	C	2.703e^-4	0.732	INTRON CG12009
3R	8366882	3R_8366882_SNP [dm3] 3R_12541160_SNP [dm6]	A	G	2.705e^-4	0.732	INTRON Octbeta3R
X	6545366	X_6545366_SNP [dm3] X_6651333_SNP [dm6]	A	G	2.706e^-4	0.732	UTR_3_PRIME pigs	TF binding site mE1_TFBS_inv
3R	12933316	3R_12933316_SNP [dm3] 3R_17107594_SNP [dm6]	G	A	2.707e^-4	0.732	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23500564	3R_23500564_SNP [dm3] 3R_27674842_SNP [dm6]	C	T	2.712e^-4	0.732	SYNONYMOUS_CODING unc80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6982388	2L_6982388_SNP [dm3] 2L_6982388_SNP [dm6]	C	T	2.715e^-4	0.732	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22993218	3R_22993218_SNP [dm3] 3R_27167496_SNP [dm6]	G	A	2.718e^-4	0.732	DOWNSTREAM spn-D INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	8656500	3L_8656500_SNP [dm3] 3L_8663400_SNP [dm6]	C	T	2.723e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12501493	2L_12501493_INS [dm3] 2L_12501493_INS [dm6]	T	TT	2.724e^-4	0.732	INTRON bun
2L	15088053	2L_15088053_SNP [dm3] 2L_15088053_SNP [dm6]	C	T	2.728e^-4	0.732	SYNONYMOUS_CODING CG15270
2R	14278694	2R_14278694_SNP [dm3] 2R_18391189_SNP [dm6]	C	T	2.731e^-4	0.732	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3R	13229981	3R_13229981_DEL [dm3] 3R_17404259_DEL [dm6]	TAAT	T	2.732e^-4	0.732	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
3L	9229814	3L_9229814_DEL [dm3] 3L_9236714_DEL [dm6]	CC	C	2.738e^-4	0.732	UPSTREAM CG4483 INTERGENIC
3L	4794547	3L_4794547_SNP [dm3] 3L_4794547_SNP [dm6]	T	G	2.740e^-4	0.732	INTRON RhoGEF64C
3R	23502700	3R_23502700_SNP [dm3] 3R_27676978_SNP [dm6]	A	T	2.746e^-4	0.732	UTR_3_PRIME unc80 UPSTREAM CG5590	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	15119131	3R_15119131_SNP [dm3] 3R_19293409_SNP [dm6]	C	T	2.755e^-4	0.732	INTERGENIC
3R	23474545	3R_23474545_SNP [dm3] 3R_27648823_SNP [dm6]	G	T	2.763e^-4	0.732	NON_SYNONYMOUS_CODING tau INTRON tau
3L	10757781	3L_10757781_SNP [dm3] 3L_10764681_SNP [dm6]	T	A	2.765e^-4	0.732	INTERGENIC
2L	9203108	2L_9203108_SNP [dm3] 2L_9203108_SNP [dm6]	A	T	2.767e^-4	0.732	INTRON tai	TF binding site mE1_TFBS_Trl
2L	9203110	2L_9203110_INS [dm3] 2L_9203110_INS [dm6]	A	AG	2.767e^-4	0.732	INTRON tai	TF binding site mE1_TFBS_Trl
3R	3259844	3R_3259844_SNP [dm3] 3R_7434122_SNP [dm6]	T	C	2.771e^-4	0.732	INTERGENIC
3L	5243279	3L_5243279_SNP [dm3] 3L_5250179_SNP [dm6]	A	T	2.773e^-4	0.732	INTRON shep
2L	17943874	2L_17943874_SNP [dm3] 2L_17943874_SNP [dm6]	T	C	2.777e^-4	0.732	INTERGENIC
3L	15077446	3L_15077446_SNP [dm3] 3L_15084346_SNP [dm6]	G	A	2.781e^-4	0.732	SYNONYMOUS_CODING cp309 START_GAINED cp309 UTR_5_PRIME cp309	TF binding site mE1_TFBS_cad
X	12654521	X_12654521_SNP [dm3] X_12760488_SNP [dm6]	C	T	2.786e^-4	0.732	UTR_5_PRIME ade5 DOWNSTREAM CG12717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13342811	3L_13342811_SNP [dm3] 3L_13349711_SNP [dm6]	A	T	2.786e^-4	0.732	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	11743848	X_11743848_SNP [dm3] X_11849815_SNP [dm6]	T	C	2.791e^-4	0.732	EXON CR45619
3L	8381353	3L_8381353_SNP [dm3] 3L_8388253_SNP [dm6]	T	A	2.794e^-4	0.732	NON_SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14707754	3R_14707754_SNP [dm3] 3R_18882032_SNP [dm6]	G	C	2.805e^-4	0.733	INTERGENIC
2R	18609865	2R_18609865_SNP [dm3] 2R_22722360_SNP [dm6]	G	A	2.806e^-4	0.733	DOWNSTREAM jbug INTRON jbug
3R	21068190	3R_21068190_SNP [dm3] 3R_25242468_SNP [dm6]	G	T	2.810e^-4	0.733	DOWNSTREAM to & 1 other INTRON CG11854
X	20571391	X_20571391_DEL [dm3] X_20700364_DEL [dm6]	AAGATATTTTCTTA...	A	2.815e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs
2L	15052238	2L_15052238_SNP [dm3] 2L_15052238_SNP [dm6]	C	A	2.822e^-4	0.733	INTRON ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10782877	X_10782877_SNP [dm3] X_10888844_SNP [dm6]	T	G	2.823e^-4	0.733	INTRON Ork1
3R	3212190	3R_3212190_SNP [dm3] 3R_7386468_SNP [dm6]	C	G	2.834e^-4	0.734	UPSTREAM CR45560 INTERGENIC
2L	15056712	2L_15056712_SNP [dm3] 2L_15056712_SNP [dm6]	T	A	2.834e^-4	0.734	INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3R	22107291	3R_22107291_SNP [dm3] 3R_26281569_SNP [dm6]	C	G	2.846e^-4	0.736	INTERGENIC
2L	11980282	2L_11980282_SNP [dm3] 2L_11980282_SNP [dm6]	G	C	2.847e^-4	0.736	INTERGENIC
3R	1936072	3R_1936072_SNP [dm3] 3R_6110350_SNP [dm6]	G	C	2.858e^-4	0.737	NON_SYNONYMOUS_CODING Obp83ef DOWNSTREAM Obp83cd
3R	6311761	3R_6311761_SNP [dm3] 3R_10486039_SNP [dm6]	G	C	2.864e^-4	0.737	INTERGENIC
3L	535093	3L_535093_SNP [dm3] 3L_535093_SNP [dm6]	T	A	2.865e^-4	0.737	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20039873	X_20039873_DEL [dm3] X_20145840_DEL [dm6]	TT	T	2.868e^-4	0.737	INTERGENIC
2L	12157143	2L_12157143_SNP [dm3] 2L_12157143_SNP [dm6]	G	A	2.872e^-4	0.737	INTRON CG31760
3R	13550930	3R_13550930_INS [dm3] 3R_17725208_INS [dm6]	T	TGTAGTAAAGCACCT...	2.885e^-4	0.739	UPSTREAM Lgr1 & 1 other INTERGENIC
2R	13056299	2R_13056299_SNP [dm3] 2R_17168794_SNP [dm6]	A	T	2.893e^-4	0.74	INTERGENIC
X	4768412	X_4768412_SNP [dm3] X_4874379_SNP [dm6]	T	C	2.896e^-4	0.74	INTRON CG42594 EXON CR43495
2L	15071656	2L_15071656_SNP [dm3] 2L_15071656_SNP [dm6]	A	G	2.899e^-4	0.74	SYNONYMOUS_CODING vas INTRON vas
2L	5652171	2L_5652171_SNP [dm3] 2L_5652171_SNP [dm6]	A	T	2.909e^-4	0.741	UTR_5_PRIME CG31646
2L	6271018	2L_6271018_SNP [dm3] 2L_6271018_SNP [dm6]	C	A	2.914e^-4	0.742	UPSTREAM CR42735 INTRON Ddr
3R	14128275	3R_14128275_SNP [dm3] 3R_18302553_SNP [dm6]	C	G	2.921e^-4	0.742	NON_SYNONYMOUS_CODING CG7126 UPSTREAM CG18600 DOWNSTREAM PKD
3R	26849489	3R_26849489_SNP [dm3] 3R_31023767_SNP [dm6]	C	A	2.929e^-4	0.743	INTERGENIC
X	8055437	X_8055437_INS [dm3] X_8161404_INS [dm6]	T	TAGATATGAAAT...	2.957e^-4	0.747	UTR_3_PRIME CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25905376	3R_25905376_SNP [dm3] 3R_30079654_SNP [dm6]	G	C	2.960e^-4	0.747	INTRON sima
3L	3929801	3L_3929801_SNP [dm3] 3L_3929801_SNP [dm6]	T	C	2.961e^-4	0.747	UPSTREAM Eip63F-1 INTRON Eip63F-1
3L	14552660	3L_14552660_SNP [dm3] 3L_14559560_SNP [dm6]	A	T	2.961e^-4	0.747	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10867844	2L_10867844_SNP [dm3] 2L_10867844_SNP [dm6]	C	A	2.964e^-4	0.747	INTERGENIC
3R	2032339	3R_2032339_SNP [dm3] 3R_6206617_SNP [dm6]	G	T	2.985e^-4	0.75	INTRON Osi24
2L	15094085	2L_15094085_SNP [dm3] 2L_15094085_SNP [dm6]	A	G	2.987e^-4	0.75	INTRON CG15270
3L	5723448	3L_5723448_SNP [dm3] 3L_5730348_SNP [dm6]	T	G	2.992e^-4	0.75	INTRON sif
2R	6485220	2R_6485220_SNP [dm3] 2R_10597715_SNP [dm6]	A	G	2.992e^-4	0.75	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	14221775	2R_14221775_SNP [dm3] 2R_18334270_SNP [dm6]	G	A	3.007e^-4	0.751	INTRON sbb
2R	18609934	2R_18609934_DEL [dm3] 2R_22722429_DEL [dm6]	GTG	G	3.010e^-4	0.751	DOWNSTREAM jbug INTRON jbug
3R	2148209	3R_2148209_SNP [dm3] 3R_6322487_SNP [dm6]	G	A	3.012e^-4	0.751	INTRON Osi17
2L	5466922	2L_5466922_SNP [dm3] 2L_5466922_SNP [dm6]	A	T	3.012e^-4	0.751	UTR_3_PRIME mid DOWNSTREAM mid
3R	16490535	3R_16490535_SNP [dm3] 3R_20664813_SNP [dm6]	T	G	3.014e^-4	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	13269215	X_13269215_SNP [dm3] X_13375182_SNP [dm6]	A	G	3.021e^-4	0.751	INTRON CG1640	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18146505	2L_18146505_SNP [dm3] 2L_18146505_SNP [dm6]	T	G	3.031e^-4	0.751	INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22225438	X_22225438_SNP [dm3] X_22823602_SNP [dm6]	G	T	3.033e^-4	0.751	DOWNSTREAM fog INTERGENIC	transposable element FlyBase
3R	5651386	3R_5651386_SNP [dm3] 3R_9825664_SNP [dm6]	T	C	3.034e^-4	0.751	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC
3L	8116891	3L_8116891_SNP [dm3] 3L_8123791_SNP [dm6]	G	T	3.060e^-4	0.751	SYNONYMOUS_CODING CG7550 DOWNSTREAM mRpL36 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6433980	3L_6433980_SNP [dm3] 3L_6440880_SNP [dm6]	T	A	3.061e^-4	0.751	INTRON CG42747
2L	15066697	2L_15066697_SNP [dm3] 2L_15066697_SNP [dm6]	T	C	3.065e^-4	0.751	INTRON vas & 1 other	TF binding site BDTNP1_TFBS_dl
3L	4168265	3L_4168265_SNP [dm3] 3L_4168265_SNP [dm6]	C	T	3.065e^-4	0.751	UPSTREAM mas EXON CR44529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4457172	3L_4457172_SNP [dm3] 3L_4457172_SNP [dm6]	T	C	3.066e^-4	0.751	DOWNSTREAM CG11345 INTERGENIC
2L	15037425	2L_15037425_SNP [dm3] 2L_15037425_SNP [dm6]	C	T	3.070e^-4	0.751	SYNONYMOUS_CODING yellow-c UTR_3_PRIME CIAPIN1	TF binding site mE1_TFBS_sens
X	5588315	X_5588315_SNP [dm3] X_5694282_SNP [dm6]	A	G	3.071e^-4	0.751	SYNONYMOUS_CODING CG3149	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	24458579	3R_24458579_SNP [dm3] 3R_28632857_SNP [dm6]	C	A	3.072e^-4	0.751	INTRON CG10011	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	14090927	3L_14090927_SNP [dm3] 3L_14097827_SNP [dm6]	A	T	3.073e^-4	0.751	UTR_5_PRIME Fbp1 INTRON Fbp1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	14278672	2R_14278672_SNP [dm3] 2R_18391167_SNP [dm6]	C	A	3.074e^-4	0.751	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
2L	4430692	2L_4430692_SNP [dm3] 2L_4430692_SNP [dm6]	A	G	3.074e^-4	0.751	INTRON CG15431
2R	16830053	2R_16830053_SNP [dm3] 2R_20942548_SNP [dm6]	C	A	3.084e^-4	0.752	INTERGENIC
3L	4429180	3L_4429180_SNP [dm3] 3L_4429180_SNP [dm6]	T	C	3.086e^-4	0.752	UPSTREAM nAChRbeta1 INTERGENIC	regulatory region REDfly_CRMs
X	4768490	X_4768490_SNP [dm3] X_4874457_SNP [dm6]	T	G	3.094e^-4	0.753	UPSTREAM CR43495 INTRON CG42594
3L	4797013	3L_4797013_SNP [dm3] 3L_4797013_SNP [dm6]	C	A	3.097e^-4	0.753	DOWNSTREAM RhoGEF64C INTERGENIC
2R	19496641	2R_19496641_SNP [dm3] 2R_23609118_SNP [dm6]	G	A	3.103e^-4	0.753	UPSTREAM CG4019 INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14829551	3R_14829551_INS [dm3] 3R_19003829_INS [dm6]	A	AAGAACCACT	3.110e^-4	0.753	INTRON gukh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16239004	2L_16239004_SNP [dm3] 2L_16239004_SNP [dm6]	A	G	3.111e^-4	0.753	INTRON CG42817
2R	10990506	2R_10990506_DEL [dm3] 2R_15103001_DEL [dm6]	CC	C	3.114e^-4	0.753	INTERGENIC
3R	3212618	3R_3212618_SNP [dm3] 3R_7386896_SNP [dm6]	C	A	3.126e^-4	0.754	UPSTREAM CR45560 INTERGENIC
3R	21889969	3R_21889969_SNP [dm3] 3R_26064247_SNP [dm6]	T	C	3.134e^-4	0.754	INTERGENIC
3R	23468428	3R_23468428_SNP [dm3] 3R_27642706_SNP [dm6]	T	C	3.136e^-4	0.754	UPSTREAM mir-1001 INTRON tau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1712784	3R_1712784_SNP [dm3] 3R_5887062_SNP [dm6]	C	T	3.142e^-4	0.754	INTRON CG34113	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10246991	3L_10246991_SNP [dm3] 3L_10253891_SNP [dm6]	C	T	3.142e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10290315	3R_10290315_SNP [dm3] 3R_14464593_SNP [dm6]	A	C	3.144e^-4	0.754	INTRON cv-c
3R	23533397	3R_23533397_SNP [dm3] 3R_27707675_SNP [dm6]	G	C	3.148e^-4	0.754	SYNONYMOUS_CODING CG12877 UPSTREAM CG12428	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	15051090	2L_15051090_SNP [dm3] 2L_15051090_SNP [dm6]	G	A	3.159e^-4	0.755	SYNONYMOUS_CODING ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	1062497	2L_1062497_SNP [dm3] 2L_1062497_SNP [dm6]	A	G	3.164e^-4	0.755	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18470946	3L_18470946_SNP [dm3] 3L_18477846_SNP [dm6]	C	T	3.172e^-4	0.755	UPSTREAM CR44673 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	10290244	3R_10290244_SNP [dm3] 3R_14464522_SNP [dm6]	G	A	3.172e^-4	0.755	INTRON cv-c
2R	7323338	2R_7323338_SNP [dm3] 2R_11435833_SNP [dm6]	T	A	3.174e^-4	0.755	UPSTREAM CG7777 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3R	21889957	3R_21889957_SNP [dm3] 3R_26064235_SNP [dm6]	T	G	3.178e^-4	0.755	INTERGENIC
2L	18137524	2L_18137524_SNP [dm3] 2L_18137524_SNP [dm6]	A	G	3.179e^-4	0.755	SYNONYMOUS_CODING kel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25770401	3R_25770401_SNP [dm3] 3R_29944679_SNP [dm6]	G	A	3.192e^-4	0.755	SYNONYMOUS_CODING CG15523
3R	23544640	3R_23544640_SNP [dm3] 3R_27718918_SNP [dm6]	C	T	3.193e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8374520	X_8374520_DEL [dm3] X_8480487_DEL [dm6]	AG	A	3.193e^-4	0.755	UTR_3_PRIME Cp36 INTRON CG33223
3L	18247125	3L_18247125_SNP [dm3] 3L_18254025_SNP [dm6]	C	T	3.197e^-4	0.755	INTERGENIC
3L	13252735	3L_13252735_SNP [dm3] 3L_13259635_SNP [dm6]	T	G	3.205e^-4	0.755	INTRON caps
2R	14278696	2R_14278696_SNP [dm3] 2R_18391191_SNP [dm6]	T	C	3.210e^-4	0.755	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3R	1562427	3R_1562427_SNP [dm3] 3R_5736705_SNP [dm6]	C	T	3.217e^-4	0.755	UPSTREAM CG1236 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	24336789	3R_24336789_SNP [dm3] 3R_28511067_SNP [dm6]	G	T	3.217e^-4	0.755	SYNONYMOUS_CODING Dhc98D
X	16618804	X_16618804_SNP [dm3] X_16724771_SNP [dm6]	A	G	3.223e^-4	0.755	INTRON CG32572
3R	25319456	3R_25319456_SNP [dm3] 3R_29493734_SNP [dm6]	A	T	3.226e^-4	0.755	UPSTREAM Diedel & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	7289639	2R_7289639_SNP [dm3] 2R_11402134_SNP [dm6]	C	A	3.235e^-4	0.755	INTERGENIC
2L	17003689	2L_17003689_SNP [dm3] 2L_17003689_SNP [dm6]	C	T	3.245e^-4	0.755	INTERGENIC
2L	7888230	2L_7888230_SNP [dm3] 2L_7888230_SNP [dm6]	A	G	3.248e^-4	0.755	NON_SYNONYMOUS_CODING Spn28Da UPSTREAM CG7102	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	1744481	2L_1744481_SNP [dm3] 2L_1744481_SNP [dm6]	C	T	3.254e^-4	0.755	INTRON CG17646
3L	4797713	3L_4797713_SNP [dm3] 3L_4797713_SNP [dm6]	C	G	3.260e^-4	0.755	INTERGENIC
3R	2137396	3R_2137396_SNP [dm3] 3R_6311674_SNP [dm6]	A	G	3.261e^-4	0.755	UPSTREAM Osi17 DOWNSTREAM CG31560 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16317117	3L_16317117_SNP [dm3] 3L_16324017_SNP [dm6]	A	T	3.268e^-4	0.755	SYNONYMOUS_CODING CG13059
3R	25770833	3R_25770833_SNP [dm3] 3R_29945111_SNP [dm6]	G	T	3.275e^-4	0.755	SYNONYMOUS_CODING CG15523
X	18862895	X_18862895_SNP [dm3] X_18968862_SNP [dm6]	G	A	3.279e^-4	0.755	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_inv
3R	11055350	3R_11055350_SNP [dm3] 3R_15229628_SNP [dm6]	T	A	3.281e^-4	0.755	UPSTREAM mRpS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	26940824	3R_26940824_SNP [dm3] 3R_31115102_SNP [dm6]	A	C	3.287e^-4	0.755	INTERGENIC
3R	25701105	3R_25701105_SNP [dm3] 3R_29875383_SNP [dm6]	C	T	3.296e^-4	0.755	DOWNSTREAM CG34133 INTERGENIC
3R	14009721	3R_14009721_SNP [dm3] 3R_18183999_SNP [dm6]	T	A	3.305e^-4	0.755	SYNONYMOUS_CODING CG7208 UPSTREAM cdm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25902058	3R_25902058_SNP [dm3] 3R_30076336_SNP [dm6]	A	T	3.307e^-4	0.755	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3R	21889958	3R_21889958_SNP [dm3] 3R_26064236_SNP [dm6]	A	T	3.317e^-4	0.755	INTERGENIC
3R	13494805	3R_13494805_SNP [dm3] 3R_17669083_SNP [dm6]	C	T	3.319e^-4	0.755	SYNONYMOUS_CODING CG14322 DOWNSTREAM CG7523 & 1 other	TF binding site mE1_TFBS_inv
3L	757526	3L_757526_SNP [dm3] 3L_757526_SNP [dm6]	A	T	3.324e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4797019	3L_4797019_SNP [dm3] 3L_4797019_SNP [dm6]	C	A	3.327e^-4	0.755	DOWNSTREAM RhoGEF64C INTERGENIC
3R	6306099	3R_6306099_SNP [dm3] 3R_10480377_SNP [dm6]	G	A	3.331e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13551148	3R_13551148_SNP [dm3] 3R_17725426_SNP [dm6]	C	G	3.331e^-4	0.755	UPSTREAM Lgr1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	17257233	X_17257233_SNP [dm3] X_17363200_SNP [dm6]	T	C	3.332e^-4	0.755	INTERGENIC
3R	3218709	3R_3218709_DEL [dm3] 3R_7392987_DEL [dm6]	GG	G	3.335e^-4	0.755	DOWNSTREAM CG42650 INTERGENIC
3L	15838484	3L_15838484_SNP [dm3] 3L_15845384_SNP [dm6]	G	A	3.340e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17262569	2L_17262569_SNP [dm3] 2L_17262569_SNP [dm6]	A	G	3.342e^-4	0.755	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	9331655	3L_9331655_SNP [dm3] 3L_9338555_SNP [dm6]	T	C	3.343e^-4	0.755	UPSTREAM PGRP-LC DOWNSTREAM PGRP-LA INTERGENIC
2L	17943870	2L_17943870_SNP [dm3] 2L_17943870_SNP [dm6]	C	T	3.345e^-4	0.755	INTERGENIC
3L	13342787	3L_13342787_SNP [dm3] 3L_13349687_SNP [dm6]	T	C	3.363e^-4	0.755	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20950784	X_20950784_SNP [dm3] X_21079757_SNP [dm6]	C	A	3.365e^-4	0.755	DOWNSTREAM bves INTRON bves	TF binding site BDTNP1_TFBS_dl
3R	21889931	3R_21889931_SNP [dm3] 3R_26064209_SNP [dm6]	T	C	3.374e^-4	0.755	INTERGENIC
3L	9016124	3L_9016124_SNP [dm3] 3L_9023024_SNP [dm6]	G	A	3.378e^-4	0.755	INTERGENIC
3R	1814189	3R_1814189_SNP [dm3] 3R_5988467_SNP [dm6]	T	G	3.382e^-4	0.755	UPSTREAM CR44927 INTERGENIC
3L	9159555	3L_9159555_SNP [dm3] 3L_9166455_SNP [dm6]	T	A	3.382e^-4	0.755	INTRON Rdl
X	11440408	X_11440408_SNP [dm3] X_11546375_SNP [dm6]	C	A	3.382e^-4	0.755	INTRON Drak
3R	1583231	3R_1583231_SNP [dm3] 3R_5757509_SNP [dm6]	C	T	3.386e^-4	0.755	NON_SYNONYMOUS_CODING Sec8	TF binding site mE1_TFBS_cad
2L	16782575	2L_16782575_SNP [dm3] 2L_16782575_SNP [dm6]	T	A	3.388e^-4	0.755	INTRON Mhc	TF binding site mE1_TFBS_chinmo
X	20159104	X_20159104_SNP [dm3] X_20288077_SNP [dm6]	A	T	3.392e^-4	0.755	INTERGENIC
3R	7889103	3R_7889103_SNP [dm3] 3R_12063381_SNP [dm6]	C	T	3.393e^-4	0.755	UPSTREAM CG14740 INTERGENIC
2R	19811904	2R_19811904_SNP [dm3] 2R_23924381_SNP [dm6]	A	G	3.393e^-4	0.755	UPSTREAM CG2812 DOWNSTREAM Ca-P60A INTRON kcc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	754725	3L_754725_SNP [dm3] 3L_754725_SNP [dm6]	A	G	3.405e^-4	0.755	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	9543426	X_9543426_SNP [dm3] X_9649393_SNP [dm6]	G	T	3.405e^-4	0.755	INTRON l_1_G0232
X	12963602	X_12963602_SNP [dm3] X_13069569_SNP [dm6]	C	A	3.410e^-4	0.755	INTRON rad
3R	22138274	3R_22138274_SNP [dm3] 3R_26312552_SNP [dm6]	C	T	3.411e^-4	0.755	INTERGENIC
2L	16137109	2L_16137109_SNP [dm3] 2L_16137109_SNP [dm6]	A	G	3.412e^-4	0.755	UPSTREAM CR44871 INTERGENIC
3R	23537152	3R_23537152_SNP [dm3] 3R_27711430_SNP [dm6]	T	C	3.412e^-4	0.755	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18374163	3R_18374163_SNP [dm3] 3R_22548441_SNP [dm6]	A	G	3.419e^-4	0.755	UPSTREAM AdipoR INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	811641	3L_811641_SNP [dm3] 3L_811641_SNP [dm6]	A	G	3.422e^-4	0.755	INTERGENIC
3R	3265270	3R_3265270_SNP [dm3] 3R_7439548_SNP [dm6]	C	A	3.423e^-4	0.755	UPSTREAM CG14598 INTERGENIC
3R	22987301	3R_22987301_SNP [dm3] 3R_27161579_SNP [dm6]	T	A	3.427e^-4	0.755	SYNONYMOUS_CODING CG5909
2R	19797890	2R_19797890_SNP [dm3] 2R_23910367_SNP [dm6]	C	T	3.430e^-4	0.755	UPSTREAM kcc INTRON kcc
3L	10641748	3L_10641748_SNP [dm3] 3L_10648648_SNP [dm6]	T	C	3.437e^-4	0.755	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15300892	3R_15300892_SNP [dm3] 3R_19475170_SNP [dm6]	G	A	3.438e^-4	0.755	INTRON Dys
3R	2028716	3R_2028716_SNP [dm3] 3R_6202994_SNP [dm6]	G	A	3.443e^-4	0.755	INTRON Osi24
3L	4041171	3L_4041171_SNP [dm3] 3L_4041171_SNP [dm6]	T	C	3.445e^-4	0.755	SYNONYMOUS_CODING Rcd5 UPSTREAM CG11593	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14221781	2R_14221781_SNP [dm3] 2R_18334276_SNP [dm6]	C	T	3.450e^-4	0.755	INTRON sbb
X	5588318	X_5588318_SNP [dm3] X_5694285_SNP [dm6]	G	A	3.462e^-4	0.755	SYNONYMOUS_CODING CG3149	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	18608060	2R_18608060_SNP [dm3] 2R_22720555_SNP [dm6]	A	G	3.468e^-4	0.755	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20357487	2R_20357487_SNP [dm3] 2R_24469964_SNP [dm6]	G	A	3.471e^-4	0.755	INTRON CG13579
3L	4477542	3L_4477542_SNP [dm3] 3L_4477542_SNP [dm6]	C	T	3.472e^-4	0.755	INTERGENIC
3R	1939841	3R_1939841_SNP [dm3] 3R_6114119_SNP [dm6]	C	T	3.487e^-4	0.755	INTERGENIC
3R	16132804	3R_16132804_SNP [dm3] 3R_20307082_SNP [dm6]	T	C	3.492e^-4	0.755	INTRON CG4362	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4874166	3R_4874166_SNP [dm3] 3R_9048444_SNP [dm6]	T	A	3.501e^-4	0.755	UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5583825	2R_5583825_SNP [dm3] 2R_9696320_SNP [dm6]	C	T	3.504e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_sens
X	11751088	X_11751088_SNP [dm3] X_11857055_SNP [dm6]	T	C	3.506e^-4	0.755	INTRON ATP7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8362561	2L_8362561_SNP [dm3] 2L_8362561_SNP [dm6]	C	G	3.509e^-4	0.755	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	10378565	3L_10378565_SNP [dm3] 3L_10385465_SNP [dm6]	G	A	3.509e^-4	0.755	UPSTREAM CR45245 INTERGENIC
3R	16132962	3R_16132962_SNP [dm3] 3R_20307240_SNP [dm6]	C	T	3.513e^-4	0.755	INTRON CG4362	TF binding site BDTNP1_TFBS_dl
2R	3888521	2R_3888521_SNP [dm3] 2R_8001016_SNP [dm6]	T	C	3.514e^-4	0.755	SYNONYMOUS_CODING CG11191	TF binding site mE1_TFBS_chinmo
3L	14628444	3L_14628444_SNP [dm3] 3L_14635344_SNP [dm6]	C	T	3.523e^-4	0.755	INTRON dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	9543277	X_9543277_SNP [dm3] X_9649244_SNP [dm6]	C	T	3.523e^-4	0.755	INTRON l_1_G0232
3R	23492278	3R_23492278_DEL [dm3] 3R_27666556_DEL [dm6]	GA	G	3.524e^-4	0.755	INTRON unc80
3L	11148186	3L_11148186_SNP [dm3] 3L_11155086_SNP [dm6]	G	A	3.529e^-4	0.755	INTRON CG32082
2L	15056282	2L_15056282_SNP [dm3] 2L_15056282_SNP [dm6]	T	C	3.531e^-4	0.755	INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	22002747	3R_22002747_SNP [dm3] 3R_26177025_SNP [dm6]	C	A	3.531e^-4	0.755	INTRON CG31323
2L	1035080	2L_1035080_SNP [dm3] 2L_1035080_SNP [dm6]	G	A	3.533e^-4	0.755	UPSTREAM IA-2 INTRON IA-2
3L	6635949	3L_6635949_SNP [dm3] 3L_6642849_SNP [dm6]	A	T	3.537e^-4	0.755	DOWNSTREAM CR45239 INTERGENIC
2L	18139926	2L_18139926_SNP [dm3] 2L_18139926_SNP [dm6]	A	G	3.538e^-4	0.755	SYNONYMOUS_CODING Socs36E	TF binding site mE1_TFBS_cad
3R	10107822	3R_10107822_SNP [dm3] 3R_14282100_SNP [dm6]	C	T	3.546e^-4	0.755	INTRON trx	TF binding site BDTNP1_TFBS_dl
2R	3896213	2R_3896213_SNP [dm3] 2R_8008708_SNP [dm6]	A	G	3.546e^-4	0.755	DOWNSTREAM CG14762 INTRON Odc2	TF binding site mE1_TFBS_cad
3L	8080272	3L_8080272_SNP [dm3] 3L_8087172_SNP [dm6]	C	A	3.548e^-4	0.755	DOWNSTREAM CG7565 INTRON Ect4
3L	12648588	3L_12648588_SNP [dm3] 3L_12655488_SNP [dm6]	G	A	3.551e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4794549	3L_4794549_SNP [dm3] 3L_4794549_SNP [dm6]	G	T	3.557e^-4	0.755	INTRON RhoGEF64C
3R	10107834	3R_10107834_SNP [dm3] 3R_14282112_SNP [dm6]	T	A	3.558e^-4	0.755	INTRON trx	TF binding site BDTNP1_TFBS_dl
3L	8078031	3L_8078031_SNP [dm3] 3L_8084931_SNP [dm6]	T	C	3.561e^-4	0.755	INTRON Ect4
X	2797101	X_2797101_SNP [dm3] X_2903068_SNP [dm6]	C	T	3.561e^-4	0.755	INTRON kirre
3R	23444189	3R_23444189_INS [dm3] 3R_27618467_INS [dm6]	T	TTAAATT	3.562e^-4	0.755	INTRON Tusp
3L	18250803	3L_18250803_SNP [dm3] 3L_18257703_SNP [dm6]	G	A	3.564e^-4	0.755	INTERGENIC
3L	12717022	3L_12717022_SNP [dm3] 3L_12723922_SNP [dm6]	A	C	3.578e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8627850	3L_8627850_SNP [dm3] 3L_8634750_SNP [dm6]	C	T	3.591e^-4	0.755	SYNONYMOUS_CODING Zasp66 UPSTREAM Cdc6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4883276	3R_4883276_SNP [dm3] 3R_9057554_SNP [dm6]	T	A	3.593e^-4	0.755	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4025565	2L_4025565_SNP [dm3] 2L_4025565_SNP [dm6]	G	C	3.595e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	1583325	3R_1583325_SNP [dm3] 3R_5757603_SNP [dm6]	G	A	3.605e^-4	0.755	SYNONYMOUS_CODING Sec8	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6754976	2R_6754976_SNP [dm3] 2R_10867471_SNP [dm6]	G	A	3.607e^-4	0.755	INTRON CG30015
3R	6073887	3R_6073887_SNP [dm3] 3R_10248165_SNP [dm6]	T	A	3.613e^-4	0.755	NON_SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16738769	X_16738769_DEL [dm3] X_16844736_DEL [dm6]	TTACGCGTTTTTATTAT...	A	3.613e^-4	0.755	UPSTREAM RSG7 DOWNSTREAM CG13003 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	20529362	3R_20529362_SNP [dm3] 3R_24703640_SNP [dm6]	C	T	3.615e^-4	0.755	INTRON slo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11484978	2L_11484978_SNP [dm3] 2L_11484978_SNP [dm6]	A	T	3.616e^-4	0.755	UTR_5_PRIME sala & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26564296	3R_26564296_SNP [dm3] 3R_30738574_SNP [dm6]	C	A	3.616e^-4	0.755	INTERGENIC
2R	14361393	2R_14361393_SNP [dm3] 2R_18473888_SNP [dm6]	A	G	3.618e^-4	0.755	INTRON CG30116
2R	10616452	2R_10616452_SNP [dm3] 2R_14728947_SNP [dm6]	A	T	3.620e^-4	0.755	INTERGENIC
3R	13500993	3R_13500993_SNP [dm3] 3R_17675271_SNP [dm6]	C	G	3.630e^-4	0.755	NON_SYNONYMOUS_CODING alt
X	20950803	X_20950803_SNP [dm3] X_21079776_SNP [dm6]	G	A	3.637e^-4	0.755	DOWNSTREAM bves INTRON bves	TF binding site BDTNP1_TFBS_dl
2R	14276119	2R_14276119_SNP [dm3] 2R_18388614_SNP [dm6]	T	A	3.645e^-4	0.755	UTR_3_PRIME IM3 UPSTREAM CG16836 DOWNSTREAM IM3
X	13233055	X_13233055_SNP [dm3] X_13339022_SNP [dm6]	A	G	3.645e^-4	0.755	SYNONYMOUS_CODING CG15747	TF binding site mE1_TFBS_sens
3L	4390012	3L_4390012_SNP [dm3] 3L_4390012_SNP [dm6]	G	A	3.650e^-4	0.755	INTRON slow
2R	15688565	2R_15688565_SNP [dm3] 2R_19801060_SNP [dm6]	C	T	3.663e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18354571	3L_18354571_SNP [dm3] 3L_18361471_SNP [dm6]	G	A	3.664e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	5649948	3R_5649948_SNP [dm3] 3R_9824226_SNP [dm6]	A	T	3.677e^-4	0.755	UPSTREAM CG34302 DOWNSTREAM CR42858 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5699319	X_5699319_SNP [dm3] X_5805286_SNP [dm6]	A	C	3.680e^-4	0.755	UTR_3_PRIME Cpr5C
2R	16423109	2R_16423109_SNP [dm3] 2R_20535604_SNP [dm6]	A	C	3.681e^-4	0.755	UTR_3_PRIME CG18067 UPSTREAM CG13423 DOWNSTREAM CG18067
2R	13749454	2R_13749454_SNP [dm3] 2R_17861949_SNP [dm6]	A	G	3.681e^-4	0.755	SYNONYMOUS_CODING thr DOWNSTREAM CG14490	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	12040375	2R_12040375_SNP [dm3] 2R_16152870_SNP [dm6]	A	G	3.689e^-4	0.755	INTRON lbk
3R	22139939	3R_22139939_SNP [dm3] 3R_26314217_SNP [dm6]	A	T	3.691e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6021205	2L_6021205_SNP [dm3] 2L_6021205_SNP [dm6]	G	T	3.699e^-4	0.755	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6680976	2R_6680976_SNP [dm3] 2R_10793471_SNP [dm6]	T	A	3.699e^-4	0.755	DOWNSTREAM mthl13 INTRON CG33144
3R	14883999	3R_14883999_INS [dm3] 3R_19058277_INS [dm6]	C	CAGTCATTC	3.710e^-4	0.755	INTRON cdi	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22001449	3R_22001449_SNP [dm3] 3R_26175727_SNP [dm6]	T	C	3.712e^-4	0.755	INTRON CG31323
3R	15045575	3R_15045575_SNP [dm3] 3R_19219853_SNP [dm6]	C	A	3.715e^-4	0.755	INTRON vib
2R	11308495	2R_11308495_SNP [dm3] 2R_15420990_SNP [dm6]	A	T	3.715e^-4	0.755	INTRON CG43729
2R	11476570	2R_11476570_SNP [dm3] 2R_15589065_SNP [dm6]	T	C	3.724e^-4	0.755	INTERGENIC
3R	23515540	3R_23515540_SNP [dm3] 3R_27689818_SNP [dm6]	T	C	3.737e^-4	0.755	NON_SYNONYMOUS_CODING CG12880	TF binding site mE1_TFBS_chinmo
3R	23536209	3R_23536209_SNP [dm3] 3R_27710487_SNP [dm6]	T	A	3.740e^-4	0.755	SYNONYMOUS_CODING CG12877
2R	12316948	2R_12316948_SNP [dm3] 2R_16429443_SNP [dm6]	T	A	3.743e^-4	0.755	UTR_3_PRIME Sema-2b INTRON Sema-2b
2L	17998479	2L_17998479_SNP [dm3] 2L_17998479_SNP [dm6]	G	T	3.743e^-4	0.755	INTERGENIC
2L	7576609	2L_7576609_SNP [dm3] 2L_7576609_SNP [dm6]	C	T	3.756e^-4	0.755	UPSTREAM RapGAP1 INTRON RapGAP1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	6788568	2R_6788568_SNP [dm3] 2R_10901063_SNP [dm6]	G	T	3.758e^-4	0.755	INTERGENIC
2L	4998326	2L_4998326_SNP [dm3] 2L_4998326_SNP [dm6]	A	C	3.761e^-4	0.755	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_inv mE1_TFBS_Trl
3R	3201910	3R_3201910_INS [dm3] 3R_7376188_INS [dm6]	G	GACAAGG	3.765e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9013735	3L_9013735_SNP [dm3] 3L_9020635_SNP [dm6]	G	A	3.768e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	10774650	3L_10774650_SNP [dm3] 3L_10781550_SNP [dm6]	G	A	3.770e^-4	0.755	INTERGENIC
X	15318146	X_15318146_SNP [dm3] X_15424113_SNP [dm6]	C	A	3.775e^-4	0.755	INTRON Cngl
3R	23546620	3R_23546620_SNP [dm3] 3R_27720898_SNP [dm6]	G	A	3.776e^-4	0.755	INTERGENIC
2R	11472692	2R_11472692_SNP [dm3] 2R_15585187_SNP [dm6]	A	G	3.800e^-4	0.755	INTERGENIC
2R	14278668	2R_14278668_INS [dm3] 2R_18391163_INS [dm6]	T	TCACT	3.802e^-4	0.755	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3L	7818991	3L_7818991_SNP [dm3] 3L_7825891_SNP [dm6]	A	G	3.802e^-4	0.755	SYNONYMOUS_CODING Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_cad
3L	2883528	3L_2883528_DEL [dm3] 3L_2883528_DEL [dm6]	TA	C	3.804e^-4	0.755	DOWNSTREAM spz5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3265714	3R_3265714_SNP [dm3] 3R_7439992_SNP [dm6]	A	G	3.804e^-4	0.755	INTRON CG14598
2L	17272895	2L_17272895_SNP [dm3] 2L_17272895_SNP [dm6]	G	T	3.805e^-4	0.755	INTERGENIC
2L	3944237	2L_3944237_SNP [dm3] 2L_3944237_SNP [dm6]	G	T	3.813e^-4	0.755	INTRON fred
3L	8296823	3L_8296823_SNP [dm3] 3L_8303723_SNP [dm6]	G	T	3.817e^-4	0.755	UPSTREAM Sbp2 INTRON CG7194	TF binding site BDTNP1_TFBS_dl
3R	532399	3R_532399_DEL [dm3] 3R_4706677_DEL [dm6]	TTT	T	3.819e^-4	0.755	INTRON CG43427	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25791712	3R_25791712_SNP [dm3] 3R_29965990_SNP [dm6]	G	T	3.827e^-4	0.755	INTRON TkR99D
X	11299932	X_11299932_SNP [dm3] X_11405899_SNP [dm6]	T	C	3.832e^-4	0.755	SPLICE_SITE_REGION dlg1 INTRON dlg1	TF binding site mE1_TFBS_HSA
3R	11055269	3R_11055269_SNP [dm3] 3R_15229547_SNP [dm6]	G	A	3.840e^-4	0.755	UPSTREAM mRpS10 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	15622397	3R_15622397_SNP [dm3] 3R_19796675_SNP [dm6]	G	T	3.841e^-4	0.755	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
2L	15089659	2L_15089659_SNP [dm3] 2L_15089659_SNP [dm6]	G	A	3.847e^-4	0.755	INTRON CG15270
X	15319069	X_15319069_DEL [dm3] X_15425036_DEL [dm6]	AAC	A	3.851e^-4	0.755	INTRON Cngl
3R	21068152	3R_21068152_SNP [dm3] 3R_25242430_SNP [dm6]	G	C	3.852e^-4	0.755	SYNONYMOUS_CODING CG11854 DOWNSTREAM to & 1 other
X	4262824	X_4262824_SNP [dm3] X_4368791_SNP [dm6]	T	C	3.857e^-4	0.755	UPSTREAM mir-983-1 & 2 others INTRON CG3626 EXON CR43614
2L	1666835	2L_1666835_SNP [dm3] 2L_1666835_SNP [dm6]	A	C	3.861e^-4	0.755	INTRON chinmo
2R	18609920	2R_18609920_SNP [dm3] 2R_22722415_SNP [dm6]	A	T	3.867e^-4	0.755	DOWNSTREAM jbug INTRON jbug
2L	5100564	2L_5100564_INS [dm3] 2L_5100564_INS [dm6]	T	TC	3.868e^-4	0.755	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	13920718	X_13920718_SNP [dm3] X_14026685_SNP [dm6]	A	G	3.869e^-4	0.755	INTERGENIC
3R	7321230	3R_7321230_SNP [dm3] 3R_11495508_SNP [dm6]	G	T	3.870e^-4	0.755	INTERGENIC
2L	14978970	2L_14978970_SNP [dm3] 2L_14978970_SNP [dm6]	A	C	3.870e^-4	0.755	INTRON mol
X	12182786	X_12182786_SNP [dm3] X_12288753_SNP [dm6]	C	T	3.875e^-4	0.755	INTRON Ten-a
3R	18253146	3R_18253146_SNP [dm3] 3R_22427424_SNP [dm6]	G	T	3.880e^-4	0.755	SYNONYMOUS_CODING CG13847	TF binding site mE1_TFBS_chinmo
X	10784249	X_10784249_SNP [dm3] X_10890216_SNP [dm6]	G	A	3.882e^-4	0.755	INTRON Ork1
X	10784258	X_10784258_SNP [dm3] X_10890225_SNP [dm6]	T	A	3.882e^-4	0.755	INTRON Ork1
2R	6828070	2R_6828070_SNP [dm3] 2R_10940565_SNP [dm6]	A	G	3.886e^-4	0.755	SYNONYMOUS_CODING Spn47C
3L	10300670	3L_10300670_SNP [dm3] 3L_10307570_SNP [dm6]	T	C	3.888e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23478007	3R_23478007_SNP [dm3] 3R_27652285_SNP [dm6]	T	C	3.892e^-4	0.755	UPSTREAM RpS10a INTRON tau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12172859	2L_12172859_DEL [dm3] 2L_12172859_DEL [dm6]	TA	T	3.899e^-4	0.755	UPSTREAM crok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	4138548	2R_4138548_SNP [dm3] 2R_8251043_SNP [dm6]	G	A	3.901e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	22897511	3R_22897511_SNP [dm3] 3R_27071789_SNP [dm6]	A	T	3.903e^-4	0.755	INTERGENIC
3R	13509221	3R_13509221_SNP [dm3] 3R_17683499_SNP [dm6]	G	A	3.906e^-4	0.755	NON_SYNONYMOUS_CODING CG7655 UPSTREAM alt DOWNSTREAM CG31251	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13511637	3R_13511637_SNP [dm3] 3R_17685915_SNP [dm6]	G	A	3.906e^-4	0.755	UTR_3_PRIME CG31249 UPSTREAM CG31251 DOWNSTREAM CG31360
2L	1759333	2L_1759333_SNP [dm3] 2L_1759333_SNP [dm6]	G	A	3.916e^-4	0.755	UPSTREAM CG17650 INTERGENIC
2L	16137126	2L_16137126_SNP [dm3] 2L_16137126_SNP [dm6]	A	C	3.917e^-4	0.755	UPSTREAM CR44871 INTERGENIC
3L	2659362	3L_2659362_SNP [dm3] 3L_2659362_SNP [dm6]	C	A	3.920e^-4	0.755	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4796915	3L_4796915_SNP [dm3] 3L_4796915_SNP [dm6]	A	G	3.921e^-4	0.755	DOWNSTREAM RhoGEF64C INTERGENIC
3L	4796921	3L_4796921_SNP [dm3] 3L_4796921_SNP [dm6]	A	C	3.921e^-4	0.755	DOWNSTREAM RhoGEF64C INTERGENIC
X	11368851	X_11368851_SNP [dm3] X_11474818_SNP [dm6]	T	G	3.922e^-4	0.755	INTRON CG43155
2L	10735901	2L_10735901_SNP [dm3] 2L_10735901_SNP [dm6]	T	C	3.924e^-4	0.755	SYNONYMOUS_CODING Nup107 DOWNSTREAM Vha16-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	14453825	3R_14453825_SNP [dm3] 3R_18628103_SNP [dm6]	A	C	3.924e^-4	0.755	DOWNSTREAM tRNA:CR31228 INTRON qin	TF binding site BDTNP1_TFBS_twi
3L	12533865	3L_12533865_INS [dm3] 3L_12540765_INS [dm6]	G	GTTAG	3.929e^-4	0.755	UPSTREAM CR43612 INTRON sowah	TF binding site mE1_TFBS_Kr
3R	6307583	3R_6307583_SNP [dm3] 3R_10481861_SNP [dm6]	C	A	3.930e^-4	0.755	INTERGENIC
3R	1513779	3R_1513779_SNP [dm3] 3R_5688057_SNP [dm6]	T	A	3.941e^-4	0.755	INTRON plx
3R	6307739	3R_6307739_SNP [dm3] 3R_10482017_SNP [dm6]	A	T	3.959e^-4	0.755	INTERGENIC
3R	23534565	3R_23534565_SNP [dm3] 3R_27708843_SNP [dm6]	T	A	3.968e^-4	0.755	INTRON CG12877	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8820905	3L_8820905_SNP [dm3] 3L_8827805_SNP [dm6]	A	C	3.976e^-4	0.755	UTR_5_PRIME dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13833423	2R_13833423_SNP [dm3] 2R_17945918_SNP [dm6]	C	G	3.976e^-4	0.755	INTERGENIC
3R	1537460	3R_1537460_SNP [dm3] 3R_5711738_SNP [dm6]	C	T	3.980e^-4	0.755	NON_SYNONYMOUS_CODING plx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13501833	3R_13501833_SNP [dm3] 3R_17676111_SNP [dm6]	G	C	3.980e^-4	0.755	SYNONYMOUS_CODING alt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13503328	3R_13503328_SNP [dm3] 3R_17677606_SNP [dm6]	G	T	3.980e^-4	0.755	NON_SYNONYMOUS_CODING alt	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	5695756	2L_5695756_SNP [dm3] 2L_5695756_SNP [dm6]	A	G	3.983e^-4	0.755	INTERGENIC
3R	20240492	3R_20240492_INS [dm3] 3R_24414770_INS [dm6]	A	ATA	3.997e^-4	0.755	INTRON nAChRalpha1
2R	8863818	2R_8863818_SNP [dm3] 2R_12976313_SNP [dm6]	G	T	3.997e^-4	0.755	INTRON Psc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20608178	2R_20608178_SNP [dm3] 2R_24720655_SNP [dm6]	T	C	3.999e^-4	0.755	INTRON Mid1	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	22993440	3R_22993440_SNP [dm3] 3R_27167718_SNP [dm6]	A	C	4.007e^-4	0.755	DOWNSTREAM spn-D INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	8658423	2R_8658423_SNP [dm3] 2R_12770918_SNP [dm6]	C	T	4.014e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	16147769	2L_16147769_SNP [dm3] 2L_16147769_SNP [dm6]	A	T	4.017e^-4	0.755	INTERGENIC
3R	23531741	3R_23531741_SNP [dm3] 3R_27706019_SNP [dm6]	A	T	4.019e^-4	0.755	INTRON CG12428
3L	11788835	3L_11788835_SNP [dm3] 3L_11795735_SNP [dm6]	A	G	4.022e^-4	0.755	DOWNSTREAM CG10907 INTRON Klp68D	TF binding site mE1_TFBS_sens
2L	5191458	2L_5191458_SNP [dm3] 2L_5191458_SNP [dm6]	A	G	4.023e^-4	0.755	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16698790	2L_16698790_SNP [dm3] 2L_16698790_SNP [dm6]	T	C	4.034e^-4	0.755	DOWNSTREAM mir-9c & 3 others INTRON grp EXON mir-9b
3R	11696581	3R_11696581_SNP [dm3] 3R_15870859_SNP [dm6]	C	T	4.034e^-4	0.755	INTRON CG31183
X	18052852	X_18052852_SNP [dm3] X_18158819_SNP [dm6]	C	A	4.042e^-4	0.755	INTRON Frq1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	22986080	3R_22986080_SNP [dm3] 3R_27160358_SNP [dm6]	C	T	4.054e^-4	0.755	UPSTREAM CG5909 DOWNSTREAM grass INTERGENIC
2L	6021191	2L_6021191_SNP [dm3] 2L_6021191_SNP [dm6]	T	C	4.054e^-4	0.755	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13504021	3R_13504021_SNP [dm3] 3R_17678299_SNP [dm6]	G	T	4.056e^-4	0.755	INTRON alt	TF binding site mE1_TFBS_inv

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.197e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.632	0.0987

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1387 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	11551607	X_11551607_SNP [dm3] X_11657574_SNP [dm6]	T	C	1.056e^-7	0.198	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3852342	3R_3852342_SNP [dm3] 3R_8026620_SNP [dm6]	G	A	4.791e^-7	0.449	INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14616895	2R_14616895_SNP [dm3] 2R_18729390_SNP [dm6]	C	T	1.428e^-6	0.551	NON_SYNONYMOUS_CODING List INTRON Hs3st-A
3R	3858917	3R_3858917_SNP [dm3] 3R_8033195_SNP [dm6]	G	A	2.114e^-6	0.551	UPSTREAM unc-45 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	3852455	3R_3852455_SNP [dm3] 3R_8026733_SNP [dm6]	T	C	2.264e^-6	0.551	INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3852454	3R_3852454_SNP [dm3] 3R_8026732_SNP [dm6]	T	C	2.451e^-6	0.551	INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3767387	3R_3767387_SNP [dm3] 3R_7941665_SNP [dm6]	T	A	3.280e^-6	0.551	INTRON dsx
3R	3860843	3R_3860843_SNP [dm3] 3R_8035121_SNP [dm6]	C	T	3.377e^-6	0.551	SYNONYMOUS_CODING unc-45	TF binding site mE1_TFBS_sens
3R	3856458	3R_3856458_SNP [dm3] 3R_8030736_SNP [dm6]	A	G	3.526e^-6	0.551	UTR_5_PRIME CG2747 UPSTREAM CG10903 INTRON CG10903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	3868274	3R_3868274_SNP [dm3] 3R_8042552_SNP [dm6]	A	G	4.793e^-6	0.551	DOWNSTREAM CG43060 INTRON CG43060
3R	3868205	3R_3868205_DEL [dm3] 3R_8042483_DEL [dm6]	CTCTTC	C	5.121e^-6	0.551	DOWNSTREAM CG43060 INTRON CG43060
2L	13218214	2L_13218214_SNP [dm3] 2L_13218214_SNP [dm6]	G	T	5.891e^-6	0.551	SYNONYMOUS_CODING CG9426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3851284	3R_3851284_DEL [dm3] 3R_8025562_DEL [dm6]	TT	A	5.933e^-6	0.551	INTRON CG2747
3R	3852825	3R_3852825_SNP [dm3] 3R_8027103_SNP [dm6]	A	T	5.933e^-6	0.551	START_GAINED CG2747 UTR_5_PRIME CG2747 INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3854578	3R_3854578_SNP [dm3] 3R_8028856_SNP [dm6]	G	C	5.933e^-6	0.551	NON_SYNONYMOUS_CODING ImpE3 INTRON CG2747	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3855465	3R_3855465_SNP [dm3] 3R_8029743_SNP [dm6]	T	C	5.933e^-6	0.551	UPSTREAM CG10903 & 1 other INTRON CG2747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_inv
3R	3856153	3R_3856153_SNP [dm3] 3R_8030431_SNP [dm6]	C	T	5.933e^-6	0.551	UTR_5_PRIME CG10903 UPSTREAM ImpE3 & 1 other INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	3859318	3R_3859318_SNP [dm3] 3R_8033596_SNP [dm6]	G	A	5.933e^-6	0.551	UTR_5_PRIME unc-45 UPSTREAM CG11035	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	3859617	3R_3859617_SNP [dm3] 3R_8033895_SNP [dm6]	G	A	5.933e^-6	0.551	SYNONYMOUS_CODING unc-45 UPSTREAM CG11035	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	3854029	3R_3854029_SNP [dm3] 3R_8028307_SNP [dm6]	T	A	5.938e^-6	0.551	DOWNSTREAM ImpE3 INTRON CG2747	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
3R	3854981	3R_3854981_SNP [dm3] 3R_8029259_SNP [dm6]	G	A	6.166e^-6	0.551	NON_SYNONYMOUS_CODING ImpE3 INTRON CG2747	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8936631	2R_8936631_SNP [dm3] 2R_13049126_SNP [dm6]	T	C	7.346e^-6	0.626	DOWNSTREAM CG13324 INTERGENIC
3R	3852446	3R_3852446_SNP [dm3] 3R_8026724_SNP [dm6]	T	C	8.045e^-6	0.656	INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15014598	2L_15014598_SNP [dm3] 2L_15014598_SNP [dm6]	T	A	9.068e^-6	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3852410	3R_3852410_SNP [dm3] 3R_8026688_SNP [dm6]	A	T	9.272e^-6	0.696	INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16409286	3R_16409286_SNP [dm3] 3R_20583564_SNP [dm6]	G	C	1.100e^-5	0.793	NON_SYNONYMOUS_CODING CG16953
3R	3818137	3R_3818137_SNP [dm3] 3R_7992415_SNP [dm6]	G	C	1.214e^-5	0.843	INTRON CG2781
2R	14416919	2R_14416919_SNP [dm3] 2R_18529414_SNP [dm6]	C	G	1.270e^-5	0.85	INTRON CG10924	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3813182	3R_3813182_SNP [dm3] 3R_7987460_SNP [dm6]	T	A	1.528e^-5	0.961	INTRON CG2781
3R	13699165	3R_13699165_SNP [dm3] 3R_17873443_SNP [dm6]	G	T	1.552e^-5	0.961	UTR_3_PRIME Rim DOWNSTREAM tinc
2L	15014674	2L_15014674_DEL [dm3] 2L_15014674_DEL [dm6]	CTGTGCCTGCAAATGTTTTA...	C	1.588e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6395564	3L_6395564_SNP [dm3] 3L_6402464_SNP [dm6]	G	A	1.642e^-5	0.963	INTRON CG42747
3R	13699159	3R_13699159_SNP [dm3] 3R_17873437_SNP [dm6]	T	A	1.709e^-5	0.97	UTR_3_PRIME Rim DOWNSTREAM tinc
3L	10348561	3L_10348561_SNP [dm3] 3L_10355461_SNP [dm6]	G	A	1.777e^-5	0.97	INTRON CR44327	TF binding site BDTNP1_TFBS_twi
3R	3746762	3R_3746762_SNP [dm3] 3R_7921040_SNP [dm6]	C	T	1.810e^-5	0.97	SYNONYMOUS_CODING lds UPSTREAM CG10445 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	999012	X_999012_SNP [dm3] X_1104979_SNP [dm6]	A	T	1.877e^-5	0.978	INTRON CG3655
3R	3896044	3R_3896044_DEL [dm3] 3R_8070322_DEL [dm6]	AATTAGACAGAC...	A	2.054e^-5	1	INTRON mAChR-B
3R	25238489	3R_25238489_SNP [dm3] 3R_29412767_SNP [dm6]	T	C	2.116e^-5	1	INTRON Ptp99A
3R	20808362	3R_20808362_SNP [dm3] 3R_24982640_SNP [dm6]	G	T	2.150e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	17654512	X_17654512_SNP [dm3] X_17760479_SNP [dm6]	C	T	2.156e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9412316	2R_9412316_SNP [dm3] 2R_13524811_SNP [dm6]	A	C	2.238e^-5	1	UPSTREAM CG13332 INTRON Vmat
3R	3768204	3R_3768204_SNP [dm3] 3R_7942482_SNP [dm6]	T	C	2.316e^-5	1	INTRON dsx
3L	9543492	3L_9543492_SNP [dm3] 3L_9550392_SNP [dm6]	C	T	2.439e^-5	1	INTRON CG42673
2L	9363258	2L_9363258_SNP [dm3] 2L_9363258_SNP [dm6]	T	C	2.526e^-5	1	INTERGENIC
3R	25658596	3R_25658596_SNP [dm3] 3R_29832874_SNP [dm6]	A	T	2.763e^-5	1	INTRON Atg16
3R	3767490	3R_3767490_SNP [dm3] 3R_7941768_SNP [dm6]	T	C	2.779e^-5	1	INTRON dsx
X	14789763	X_14789763_SNP [dm3] X_14895730_SNP [dm6]	A	G	2.837e^-5	1	INTRON Flo2 & 1 other
2R	3517149	2R_3517149_SNP [dm3] 2R_7629644_SNP [dm6]	C	A	2.981e^-5	1	INTRON CG43340
2R	11836227	2R_11836227_SNP [dm3] 2R_15948722_SNP [dm6]	G	A	3.000e^-5	1	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17654508	X_17654508_SNP [dm3] X_17760475_SNP [dm6]	G	T	3.003e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3868278	3R_3868278_SNP [dm3] 3R_8042556_SNP [dm6]	C	A	3.073e^-5	1	DOWNSTREAM CG43060 INTRON CG43060
2L	15651017	2L_15651017_SNP [dm3] 2L_15651017_SNP [dm6]	G	C	3.125e^-5	1	INTRON CG4587
3R	3879066	3R_3879066_SNP [dm3] 3R_8053344_SNP [dm6]	C	T	3.136e^-5	1	INTRON CG43060
2R	9412293	2R_9412293_SNP [dm3] 2R_13524788_SNP [dm6]	T	C	3.168e^-5	1	UPSTREAM CG13332 INTRON Vmat
X	7373644	X_7373644_DEL [dm3] X_7479611_DEL [dm6]	TGGCT	C	3.257e^-5	1	INTERGENIC
3R	8568404	3R_8568404_SNP [dm3] 3R_12742682_SNP [dm6]	T	C	3.278e^-5	1	SYNONYMOUS_CODING CG5999
2L	12952199	2L_12952199_SNP [dm3] 2L_12952199_SNP [dm6]	T	C	3.386e^-5	1	INTERGENIC
X	12837853	X_12837853_SNP [dm3] X_12943820_SNP [dm6]	T	C	3.411e^-5	1	INTRON fne
2L	10088153	2L_10088153_SNP [dm3] 2L_10088153_SNP [dm6]	G	A	3.478e^-5	1	INTRON CG44153	TF binding site BDTNP1_TFBS_twi
2L	7077593	2L_7077593_SNP [dm3] 2L_7077593_SNP [dm6]	T	G	3.711e^-5	1	INTRON Pvf2
X	16137907	X_16137907_INS [dm3] X_16243874_INS [dm6]	A	AA	3.718e^-5	1	INTERGENIC
2L	15014646	2L_15014646_SNP [dm3] 2L_15014646_SNP [dm6]	A	G	3.791e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14604051	2R_14604051_SNP [dm3] 2R_18716546_SNP [dm6]	G	C	4.015e^-5	1	INTERGENIC
2R	9412313	2R_9412313_SNP [dm3] 2R_13524808_SNP [dm6]	C	A	4.028e^-5	1	UPSTREAM CG13332 INTRON Vmat
3R	3748056	3R_3748056_SNP [dm3] 3R_7922334_SNP [dm6]	C	T	4.146e^-5	1	SYNONYMOUS_CODING lds DOWNSTREAM scaRNA:MeU2-C41
3R	3747635	3R_3747635_SNP [dm3] 3R_7921913_SNP [dm6]	T	G	4.238e^-5	1	UPSTREAM scaRNA:MeU2-C41 INTRON lds	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	6799857	2L_6799857_SNP [dm3] 2L_6799857_SNP [dm6]	C	T	4.247e^-5	1	UPSTREAM nrv2 DOWNSTREAM CG17376 & 2 others INTERGENIC	regulatory region REDfly_CRMs
3R	19442246	3R_19442246_SNP [dm3] 3R_23616524_SNP [dm6]	T	C	4.248e^-5	1	INTRON CG31145
X	12837852	X_12837852_SNP [dm3] X_12943819_SNP [dm6]	C	T	4.301e^-5	1	INTRON fne
3R	16410182	3R_16410182_INS [dm3] 3R_20584460_INS [dm6]	T	TAGT	4.416e^-5	1	INTRON CG16953
2L	15014658	2L_15014658_SNP [dm3] 2L_15014658_SNP [dm6]	T	C	4.697e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12557951	2L_12557951_SNP [dm3] 2L_12557951_SNP [dm6]	G	A	4.787e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12822916	2R_12822916_SNP [dm3] 2R_16935411_SNP [dm6]	G	A	4.923e^-5	1	INTRON Pkc53E
2R	14417255	2R_14417255_SNP [dm3] 2R_18529750_SNP [dm6]	T	A	4.969e^-5	1	INTRON CG10924	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12837814	X_12837814_SNP [dm3] X_12943781_SNP [dm6]	T	C	5.185e^-5	1	INTRON fne
3L	3917688	3L_3917688_SNP [dm3] 3L_3917688_SNP [dm6]	A	T	5.229e^-5	1	INTRON Eip63F-1
2L	4859884	2L_4859884_SNP [dm3] 2L_4859884_SNP [dm6]	C	G	5.230e^-5	1	INTRON pog
X	4277123	X_4277123_SNP [dm3] X_4383090_SNP [dm6]	C	T	5.301e^-5	1	DOWNSTREAM CG12688 INTERGENIC
2R	6671968	2R_6671968_SNP [dm3] 2R_10784463_SNP [dm6]	G	T	5.399e^-5	1	INTRON CG33144 EXON CR44299
2L	18919280	2L_18919280_SNP [dm3] 2L_18919280_SNP [dm6]	C	T	5.478e^-5	1	INTRON ssp3
2L	5885137	2L_5885137_SNP [dm3] 2L_5885137_SNP [dm6]	C	T	5.559e^-5	1	UTR_5_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other DOWNSTREAM CG44574
3L	5543649	3L_5543649_SNP [dm3] 3L_5550549_SNP [dm6]	A	T	5.628e^-5	1	INTRON CG10625
3R	16331637	3R_16331637_SNP [dm3] 3R_20505915_SNP [dm6]	T	C	5.761e^-5	1	SPLICE_SITE_REGION Or92a INTRON Or92a
3R	26569478	3R_26569478_SNP [dm3] 3R_30743756_SNP [dm6]	G	T	5.779e^-5	1	NON_SYNONYMOUS_CODING CG15543 DOWNSTREAM Npc2g
3R	26569490	3R_26569490_SNP [dm3] 3R_30743768_SNP [dm6]	T	G	5.779e^-5	1	SYNONYMOUS_CODING CG15543 DOWNSTREAM Npc2g
2L	13192162	2L_13192162_SNP [dm3] 2L_13192162_SNP [dm6]	A	G	5.796e^-5	1	UPSTREAM Edem2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25234710	3R_25234710_SNP [dm3] 3R_29408988_SNP [dm6]	T	A	5.807e^-5	1	INTRON Ptp99A
2L	1952064	2L_1952064_SNP [dm3] 2L_1952064_SNP [dm6]	T	C	5.834e^-5	1	SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6799860	2L_6799860_SNP [dm3] 2L_6799860_SNP [dm6]	G	A	5.852e^-5	1	UPSTREAM nrv2 DOWNSTREAM CG17376 & 2 others INTERGENIC	regulatory region REDfly_CRMs
X	13923742	X_13923742_SNP [dm3] X_14029709_SNP [dm6]	A	G	5.893e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18388748	2L_18388748_SNP [dm3] 2L_18388748_SNP [dm6]	A	G	5.936e^-5	1	SYNONYMOUS_CODING Fas3 INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15005241	2L_15005241_SNP [dm3] 2L_15005241_SNP [dm6]	G	A	6.043e^-5	1	UPSTREAM dyn-p25 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10232856	3R_10232856_SNP [dm3] 3R_14407134_SNP [dm6]	T	A	6.100e^-5	1	INTRON cv-c
3R	22604388	3R_22604388_SNP [dm3] 3R_26778666_SNP [dm6]	C	A	6.108e^-5	1	INTERGENIC
3L	16902613	3L_16902613_SNP [dm3] 3L_16909513_SNP [dm6]	A	G	6.281e^-5	1	INTRON Lmpt
2R	11943429	2R_11943429_SNP [dm3] 2R_16055924_SNP [dm6]	C	G	6.300e^-5	1	INTRON CG8405
2L	7337049	2L_7337049_DEL [dm3] 2L_7337049_DEL [dm6]	TT	T	6.339e^-5	1	INTRON Wnt6
2L	7337056	2L_7337056_DEL [dm3] 2L_7337056_DEL [dm6]	GGGTCCGGAAATAGCGAAAA...	T	6.339e^-5	1	INTRON Wnt6
2L	7337340	2L_7337340_SNP [dm3] 2L_7337340_SNP [dm6]	G	T	6.356e^-5	1	INTRON Wnt6
2L	13281673	2L_13281673_SNP [dm3] 2L_13281673_SNP [dm6]	A	T	6.385e^-5	1	UTR_3_PRIME CG44085 INTRON CG44085
3R	3697111	3R_3697111_SNP [dm3] 3R_7871389_SNP [dm6]	G	T	6.451e^-5	1	INTRON CG17816
2R	9394674	2R_9394674_SNP [dm3] 2R_13507169_SNP [dm6]	G	A	6.545e^-5	1	UPSTREAM EfTuM INTRON mip120	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7791925	2L_7791925_SNP [dm3] 2L_7791925_SNP [dm6]	A	C	6.759e^-5	1	INTRON LKR
3L	12504493	3L_12504493_SNP [dm3] 3L_12511393_SNP [dm6]	C	A	7.017e^-5	1	NON_SYNONYMOUS_CODING sti	TF binding site mE1_TFBS_sens
2R	10940860	2R_10940860_INS [dm3] 2R_15053355_INS [dm6]	T	TT	7.154e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10148600	3R_10148600_SNP [dm3] 3R_14322878_SNP [dm6]	G	T	7.175e^-5	1	SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3755985	3R_3755985_SNP [dm3] 3R_7930263_SNP [dm6]	G	A	7.316e^-5	1	SYNONYMOUS_CODING dsx DOWNSTREAM dsx	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13218217	2L_13218217_SNP [dm3] 2L_13218217_SNP [dm6]	G	A	7.331e^-5	1	SYNONYMOUS_CODING CG9426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4970916	3L_4970916_SNP [dm3] 3L_4970916_SNP [dm6]	C	T	7.356e^-5	1	INTRON Con
2R	5225740	2R_5225740_SNP [dm3] 2R_9338235_SNP [dm6]	G	A	7.392e^-5	1	INTRON CG13954 & 1 other
3L	5543612	3L_5543612_SNP [dm3] 3L_5550512_SNP [dm6]	C	T	7.444e^-5	1	INTRON CG10625
2L	10895215	2L_10895215_SNP [dm3] 2L_10895215_SNP [dm6]	G	A	7.546e^-5	1	EXON CR44491
2L	6799910	2L_6799910_SNP [dm3] 2L_6799910_SNP [dm6]	C	G	7.676e^-5	1	DOWNSTREAM CG17376 & 2 others INTERGENIC	regulatory region REDfly_CRMs
3L	6395533	3L_6395533_SNP [dm3] 3L_6402433_SNP [dm6]	G	A	8.073e^-5	1	INTRON CG42747
2R	12073280	2R_12073280_SNP [dm3] 2R_16185775_SNP [dm6]	A	G	8.077e^-5	1	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	8061395	3L_8061395_DEL [dm3] 3L_8068295_DEL [dm6]	AAAAATC	A	8.087e^-5	1	UPSTREAM tRNA:CR32363 DOWNSTREAM CG42590 INTRON Ect4
2L	4807215	2L_4807215_SNP [dm3] 2L_4807215_SNP [dm6]	G	A	8.190e^-5	1	INTERGENIC
2R	14620376	2R_14620376_SNP [dm3] 2R_18732871_SNP [dm6]	A	C	8.481e^-5	1	INTRON Hs3st-A
3L	8079688	3L_8079688_SNP [dm3] 3L_8086588_SNP [dm6]	G	A	8.672e^-5	1	INTRON Ect4	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	17171445	X_17171445_SNP [dm3] X_17277412_SNP [dm6]	A	T	8.747e^-5	1	INTRON f
2L	13712254	2L_13712254_SNP [dm3] 2L_13712254_SNP [dm6]	A	T	8.777e^-5	1	INTRON CG31814
3R	10232852	3R_10232852_SNP [dm3] 3R_14407130_SNP [dm6]	A	G	8.811e^-5	1	INTRON cv-c
3R	3853332	3R_3853332_SNP [dm3] 3R_8027610_SNP [dm6]	G	T	8.839e^-5	1	UPSTREAM CG2747 DOWNSTREAM ImpE3 INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4384038	3L_4384038_SNP [dm3] 3L_4384038_SNP [dm6]	T	C	8.845e^-5	1	UPSTREAM slow INTERGENIC
2R	7222108	2R_7222108_SNP [dm3] 2R_11334603_SNP [dm6]	G	A	8.888e^-5	1	SYNONYMOUS_CODING sha
3R	3747438	3R_3747438_SNP [dm3] 3R_7921716_SNP [dm6]	G	C	8.892e^-5	1	NON_SYNONYMOUS_CODING lds UPSTREAM scaRNA:MeU2-C41
3L	11596424	3L_11596424_SNP [dm3] 3L_11603324_SNP [dm6]	G	T	9.114e^-5	1	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14551876	2L_14551876_SNP [dm3] 2L_14551876_SNP [dm6]	G	A	9.147e^-5	1	UPSTREAM CR44853 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6799903	2L_6799903_SNP [dm3] 2L_6799903_SNP [dm6]	C	T	9.155e^-5	1	DOWNSTREAM CG17376 & 2 others INTERGENIC	regulatory region REDfly_CRMs
3R	10232853	3R_10232853_SNP [dm3] 3R_14407131_SNP [dm6]	T	A	9.167e^-5	1	INTRON cv-c
3R	3814619	3R_3814619_SNP [dm3] 3R_7988897_SNP [dm6]	A	G	9.201e^-5	1	INTRON CG2781	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15402084	2L_15402084_SNP [dm3] 2L_15402084_SNP [dm6]	T	C	9.334e^-5	1	INTERGENIC
3L	10348564	3L_10348564_SNP [dm3] 3L_10355464_SNP [dm6]	G	C	9.365e^-5	1	INTRON CR44327	TF binding site BDTNP1_TFBS_twi
2R	12825805	2R_12825805_SNP [dm3] 2R_16938300_SNP [dm6]	T	G	9.400e^-5	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	6235398	2R_6235398_SNP [dm3] 2R_10347893_SNP [dm6]	A	C	9.516e^-5	1	INTRON CG42732
3R	14040412	3R_14040412_SNP [dm3] 3R_18214690_SNP [dm6]	G	C	9.521e^-5	1	UTR_3_PRIME CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14499191	2R_14499191_SNP [dm3] 2R_18611686_SNP [dm6]	G	A	9.624e^-5	1	UTR_5_PRIME GEFmeso UTR_3_PRIME CG42697	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	8567720	3R_8567720_SNP [dm3] 3R_12741998_SNP [dm6]	T	C	9.637e^-5	1	UTR_3_PRIME CG5999 DOWNSTREAM CG5724
X	16137930	X_16137930_SNP [dm3] X_16243897_SNP [dm6]	G	A	9.671e^-5	1	INTERGENIC
2R	20131537	2R_20131537_SNP [dm3] 2R_24244014_SNP [dm6]	T	A	9.801e^-5	1	INTRON nord	TF binding site mE1_TFBS_chinmo
3R	3864818	3R_3864818_SNP [dm3] 3R_8039096_SNP [dm6]	T	A	9.842e^-5	1	EXON CR44936	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
3R	3814371	3R_3814371_SNP [dm3] 3R_7988649_SNP [dm6]	C	A	9.859e^-5	1	INTRON CG2781
2L	5693723	2L_5693723_SNP [dm3] 2L_5693723_SNP [dm6]	G	C	1.002e^-4	1	INTERGENIC
2L	7075967	2L_7075967_SNP [dm3] 2L_7075967_SNP [dm6]	A	T	1.004e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad
2R	18555935	2R_18555935_SNP [dm3] 2R_22668430_SNP [dm6]	A	T	1.008e^-4	1	UPSTREAM CG13516 DOWNSTREAM CG30273 INTRON CG30269	TF binding site mE1_TFBS_cad
3L	12758371	3L_12758371_SNP [dm3] 3L_12765271_SNP [dm6]	C	G	1.019e^-4	1	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_cad
2L	10355033	2L_10355033_SNP [dm3] 2L_10355033_SNP [dm6]	A	C	1.030e^-4	1	INTRON CG5367
3R	6659878	3R_6659878_SNP [dm3] 3R_10834156_SNP [dm6]	G	C	1.030e^-4	1	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7091347	2L_7091347_INS [dm3] 2L_7091347_INS [dm6]	C	ACGCTCTTT	1.032e^-4	1	INTERGENIC
2R	12825604	2R_12825604_SNP [dm3] 2R_16938099_SNP [dm6]	G	T	1.044e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12825635	2R_12825635_SNP [dm3] 2R_16938130_SNP [dm6]	C	G	1.044e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12073273	2R_12073273_SNP [dm3] 2R_16185768_SNP [dm6]	T	G	1.046e^-4	1	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	27227815	3R_27227815_SNP [dm3] 3R_31402093_SNP [dm6]	G	A	1.051e^-4	1	SYNONYMOUS_CODING CG11337 DOWNSTREAM Gcn2	TF binding site mE1_TFBS_cad
3L	13918557	3L_13918557_INS [dm3] 3L_13925457_INS [dm6]	G	GTGAGAGCGG	1.063e^-4	1	UPSTREAM Rgl DOWNSTREAM CG8833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10111671	2L_10111671_SNP [dm3] 2L_10111671_SNP [dm6]	T	C	1.088e^-4	1	INTRON CG44153 & 1 other
2L	6799918	2L_6799918_INS [dm3] 2L_6799918_INS [dm6]	T	CAACATGG	1.095e^-4	1	DOWNSTREAM CG17376 & 2 others INTERGENIC	regulatory region REDfly_CRMs
3L	6924240	3L_6924240_INS [dm3] 3L_6931140_INS [dm6]	A	AGAAAGTTAA	1.096e^-4	1	UTR_3_PRIME CG45413 DOWNSTREAM CG45413
2L	15625328	2L_15625328_SNP [dm3] 2L_15625328_SNP [dm6]	T	G	1.116e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16331491	3R_16331491_SNP [dm3] 3R_20505769_SNP [dm6]	A	T	1.116e^-4	1	SYNONYMOUS_CODING Or92a
2R	12825802	2R_12825802_SNP [dm3] 2R_16938297_SNP [dm6]	T	A	1.120e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3L	10535406	3L_10535406_SNP [dm3] 3L_10542306_SNP [dm6]	C	T	1.138e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3R	20213021	3R_20213021_SNP [dm3] 3R_24387299_SNP [dm6]	A	C	1.148e^-4	1	INTRON CG5768	TF binding site BDTNP1_TFBS_sna
3R	26260744	3R_26260744_SNP [dm3] 3R_30435022_SNP [dm6]	T	G	1.153e^-4	1	UTR_3_PRIME CG15534 DOWNSTREAM CG15537
2R	18023678	2R_18023678_SNP [dm3] 2R_22136173_SNP [dm6]	A	G	1.158e^-4	1	UPSTREAM a INTERGENIC
3L	10823101	3L_10823101_SNP [dm3] 3L_10830001_SNP [dm6]	C	A	1.168e^-4	1	INTERGENIC
3R	6669804	3R_6669804_SNP [dm3] 3R_10844082_SNP [dm6]	C	T	1.174e^-4	1	SYNONYMOUS_CODING Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	6669810	3R_6669810_SNP [dm3] 3R_10844088_SNP [dm6]	G	A	1.174e^-4	1	SYNONYMOUS_CODING Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	4660200	2R_4660200_SNP [dm3] 2R_8772695_SNP [dm6]	G	A	1.176e^-4	1	INTERGENIC
3R	3879065	3R_3879065_SNP [dm3] 3R_8053343_SNP [dm6]	A	G	1.202e^-4	1	INTRON CG43060
3R	22900602	3R_22900602_SNP [dm3] 3R_27074880_SNP [dm6]	A	C	1.203e^-4	1	UPSTREAM CG14257 INTERGENIC
2R	12825776	2R_12825776_SNP [dm3] 2R_16938271_SNP [dm6]	A	T	1.207e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12825777	2R_12825777_SNP [dm3] 2R_16938272_SNP [dm6]	A	T	1.207e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12825793	2R_12825793_SNP [dm3] 2R_16938288_SNP [dm6]	T	A	1.207e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2L	15407790	2L_15407790_SNP [dm3] 2L_15407790_SNP [dm6]	C	T	1.211e^-4	1	INTERGENIC
3L	1632634	3L_1632634_INS [dm3] 3L_1632634_INS [dm6]	C	CC	1.217e^-4	1	INTRON nSyb
3R	25430549	3R_25430549_SNP [dm3] 3R_29604827_SNP [dm6]	C	T	1.236e^-4	1	INTRON alph
X	20582055	X_20582055_DEL [dm3] X_20711028_DEL [dm6]	TGTAAAAATTATAAGGC...	T	1.240e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	3815476	3R_3815476_SNP [dm3] 3R_7989754_SNP [dm6]	G	A	1.243e^-4	1	INTRON CG2781
2R	16446909	2R_16446909_SNP [dm3] 2R_20559404_SNP [dm6]	T	C	1.247e^-4	1	UTR_3_PRIME lms & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	3879000	3R_3879000_SNP [dm3] 3R_8053278_SNP [dm6]	T	G	1.257e^-4	1	INTRON CG43060	TF binding site mE1_TFBS_inv
3R	13699010	3R_13699010_SNP [dm3] 3R_17873288_SNP [dm6]	G	A	1.265e^-4	1	UTR_3_PRIME Rim DOWNSTREAM tinc
2R	14762239	2R_14762239_SNP [dm3] 2R_18874734_SNP [dm6]	C	T	1.273e^-4	1	INTERGENIC
2R	12825750	2R_12825750_SNP [dm3] 2R_16938245_SNP [dm6]	T	A	1.278e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12073298	2R_12073298_SNP [dm3] 2R_16185793_SNP [dm6]	T	A	1.285e^-4	1	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12825796	2R_12825796_SNP [dm3] 2R_16938291_SNP [dm6]	C	T	1.285e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12825637	2R_12825637_SNP [dm3] 2R_16938132_SNP [dm6]	G	T	1.287e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2L	13304396	2L_13304396_SNP [dm3] 2L_13304396_SNP [dm6]	T	G	1.288e^-4	1	UTR_3_PRIME CG43778 UPSTREAM CG16825
2R	8977451	2R_8977451_SNP [dm3] 2R_13089946_SNP [dm6]	C	T	1.294e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12825823	2R_12825823_SNP [dm3] 2R_16938318_SNP [dm6]	G	T	1.296e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2L	15102673	2L_15102673_SNP [dm3] 2L_15102673_SNP [dm6]	T	C	1.296e^-4	1	INTERGENIC
3R	2324575	3R_2324575_SNP [dm3] 3R_6498853_SNP [dm6]	T	A	1.304e^-4	1	INTERGENIC
2L	15014648	2L_15014648_SNP [dm3] 2L_15014648_SNP [dm6]	T	A	1.310e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26927054	3R_26927054_SNP [dm3] 3R_31101332_SNP [dm6]	G	T	1.313e^-4	1	UPSTREAM CG15553 INTERGENIC
3L	16284116	3L_16284116_INS [dm3] 3L_16291016_INS [dm6]	G	GTTGCGTCGCCCGCA...	1.317e^-4	1	UPSTREAM CG13045 INTERGENIC
2L	9563017	2L_9563017_SNP [dm3] 2L_9563017_SNP [dm6]	G	A	1.326e^-4	1	INTRON jp
2R	9804195	2R_9804195_SNP [dm3] 2R_13916690_SNP [dm6]	G	T	1.341e^-4	1	INTRON shot
2R	12825806	2R_12825806_DEL [dm3] 2R_16938301_DEL [dm6]	TAAC	T	1.343e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	9394568	2R_9394568_SNP [dm3] 2R_13507063_SNP [dm6]	T	C	1.364e^-4	1	UPSTREAM EfTuM INTRON mip120	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10535409	3L_10535409_SNP [dm3] 3L_10542309_SNP [dm6]	A	T	1.378e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
2L	12383045	2L_12383045_SNP [dm3] 2L_12383045_SNP [dm6]	C	T	1.383e^-4	1	INTRON bru-2
2L	2083952	2L_2083952_SNP [dm3] 2L_2083952_SNP [dm6]	T	G	1.395e^-4	1	INTRON dpr3 EXON CR44055
2R	12825749	2R_12825749_SNP [dm3] 2R_16938244_SNP [dm6]	A	C	1.405e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	8975508	2R_8975508_SNP [dm3] 2R_13088003_SNP [dm6]	A	T	1.405e^-4	1	INTERGENIC
3L	12973908	3L_12973908_INS [dm3] 3L_12980808_INS [dm6]	G	GGA	1.409e^-4	1	INTERGENIC
2R	3310241	2R_3310241_SNP [dm3] 2R_7422736_SNP [dm6]	A	G	1.410e^-4	1	INTRON so EXON CR44202	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
X	13210675	X_13210675_SNP [dm3] X_13316642_SNP [dm6]	G	A	1.411e^-4	1	INTRON IP3K2
2L	20700045	2L_20700045_SNP [dm3] 2L_20700045_SNP [dm6]	C	T	1.416e^-4	1	INTRON Hr38
3R	14367291	3R_14367291_SNP [dm3] 3R_18541569_SNP [dm6]	C	T	1.437e^-4	1	INTRON fru
X	18219566	X_18219566_SNP [dm3] X_18325533_SNP [dm6]	T	C	1.444e^-4	1	UTR_3_PRIME CG6123
2R	20131741	2R_20131741_SNP [dm3] 2R_24244218_SNP [dm6]	C	T	1.445e^-4	1	INTRON nord
3L	5468172	3L_5468172_SNP [dm3] 3L_5475072_SNP [dm6]	T	A	1.450e^-4	1	INTERGENIC
2L	9562997	2L_9562997_SNP [dm3] 2L_9562997_SNP [dm6]	A	G	1.452e^-4	1	INTRON jp
3L	12827705	3L_12827705_DEL [dm3] 3L_12834605_DEL [dm6]	GCGCCGTG	G	1.453e^-4	1	INTRON CG10960	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10828724	3L_10828724_SNP [dm3] 3L_10835624_SNP [dm6]	C	A	1.461e^-4	1	INTERGENIC
2R	5140256	2R_5140256_SNP [dm3] 2R_9252751_SNP [dm6]	T	C	1.470e^-4	1	UTR_3_PRIME Pkn & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	3749346	3R_3749346_SNP [dm3] 3R_7923624_SNP [dm6]	C	T	1.489e^-4	1	NON_SYNONYMOUS_CODING lds DOWNSTREAM dsx	TF binding site mE1_TFBS_sens
X	17654503	X_17654503_SNP [dm3] X_17760470_SNP [dm6]	C	A	1.500e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4078734	2L_4078734_SNP [dm3] 2L_4078734_SNP [dm6]	G	C	1.501e^-4	1	INTRON ed
3R	19442365	3R_19442365_SNP [dm3] 3R_23616643_SNP [dm6]	A	G	1.506e^-4	1	INTRON CG31145
3R	19442386	3R_19442386_SNP [dm3] 3R_23616664_SNP [dm6]	G	C	1.506e^-4	1	INTRON CG31145
3L	12722162	3L_12722162_SNP [dm3] 3L_12729062_SNP [dm6]	T	C	1.509e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13918537	3L_13918537_SNP [dm3] 3L_13925437_SNP [dm6]	G	C	1.514e^-4	1	UPSTREAM Rgl DOWNSTREAM CG8833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16446823	2R_16446823_SNP [dm3] 2R_20559318_SNP [dm6]	C	T	1.524e^-4	1	UTR_3_PRIME lms & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2779354	3L_2779354_SNP [dm3] 3L_2779354_SNP [dm6]	G	A	1.524e^-4	1	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25469121	3R_25469121_SNP [dm3] 3R_29643399_SNP [dm6]	G	A	1.524e^-4	1	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4660191	2R_4660191_SNP [dm3] 2R_8772686_SNP [dm6]	C	T	1.532e^-4	1	INTERGENIC
2L	12268279	2L_12268279_SNP [dm3] 2L_12268279_SNP [dm6]	A	T	1.548e^-4	1	INTRON aret
3L	12973901	3L_12973901_MNP [dm3] 3L_12980801_MNP [dm6]	CCTCCA	TGGAGG	1.554e^-4	1	INTERGENIC
2R	19589724	2R_19589724_SNP [dm3] 2R_23702201_SNP [dm6]	T	C	1.555e^-4	1	UTR_5_PRIME CG4091 UPSTREAM l_2_dtl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1923010	2L_1923010_SNP [dm3] 2L_1923010_SNP [dm6]	A	C	1.568e^-4	1	INTRON CG7337
X	21265649	X_21265649_SNP [dm3] X_21394622_SNP [dm6]	C	G	1.574e^-4	1	INTERGENIC
2R	12073288	2R_12073288_SNP [dm3] 2R_16185783_SNP [dm6]	C	T	1.575e^-4	1	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12514913	2L_12514913_SNP [dm3] 2L_12514913_SNP [dm6]	T	A	1.577e^-4	1	INTRON bun
3R	10233117	3R_10233117_SNP [dm3] 3R_14407395_SNP [dm6]	C	A	1.580e^-4	1	INTRON cv-c
X	7373254	X_7373254_SNP [dm3] X_7479221_SNP [dm6]	C	A	1.588e^-4	1	INTERGENIC
2R	12825820	2R_12825820_SNP [dm3] 2R_16938315_SNP [dm6]	C	A	1.593e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
X	16640847	X_16640847_SNP [dm3] X_16746814_SNP [dm6]	T	G	1.612e^-4	1	UPSTREAM CG9634 INTRON CG9634
2R	12073270	2R_12073270_SNP [dm3] 2R_16185765_SNP [dm6]	G	A	1.617e^-4	1	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7384984	3L_7384984_SNP [dm3] 3L_7391884_SNP [dm6]	A	C	1.619e^-4	1	INTRON CG8563
3R	3801353	3R_3801353_SNP [dm3] 3R_7975631_SNP [dm6]	T	C	1.624e^-4	1	SYNONYMOUS_CODING CD98hc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18217718	X_18217718_SNP [dm3] X_18323685_SNP [dm6]	C	T	1.630e^-4	1	UTR_3_PRIME CG6123 DOWNSTREAM CG6123	TF binding site mE1_TFBS_HSA
X	17460302	X_17460302_SNP [dm3] X_17566269_SNP [dm6]	C	A	1.633e^-4	1	DOWNSTREAM ppk23 INTERGENIC
3L	10820593	3L_10820593_SNP [dm3] 3L_10827493_SNP [dm6]	A	G	1.633e^-4	1	INTERGENIC
2R	12073260	2R_12073260_SNP [dm3] 2R_16185755_SNP [dm6]	G	A	1.648e^-4	1	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	9180000	X_9180000_SNP [dm3] X_9285967_SNP [dm6]	C	T	1.649e^-4	1	NON_SYNONYMOUS_CODING lz
2R	5140251	2R_5140251_SNP [dm3] 2R_9252746_SNP [dm6]	T	C	1.649e^-4	1	UTR_3_PRIME Pkn & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
X	6966767	X_6966767_SNP [dm3] X_7072734_SNP [dm6]	T	C	1.662e^-4	1	DOWNSTREAM CG4607 INTERGENIC
2R	5104991	2R_5104991_SNP [dm3] 2R_9217486_SNP [dm6]	C	T	1.696e^-4	1	INTERGENIC
3R	8867428	3R_8867428_SNP [dm3] 3R_13041706_SNP [dm6]	A	T	1.712e^-4	1	UTR_5_PRIME snk UPSTREAM CG11670
2R	12825766	2R_12825766_DEL [dm3] 2R_16938261_DEL [dm6]	TATG	T	1.721e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3R	2167567	3R_2167567_SNP [dm3] 3R_6341845_SNP [dm6]	T	C	1.721e^-4	1	UPSTREAM CG17917 DOWNSTREAM Osi20 INTERGENIC
3R	16331497	3R_16331497_SNP [dm3] 3R_20505775_SNP [dm6]	C	A	1.722e^-4	1	SYNONYMOUS_CODING Or92a
2L	15015162	2L_15015162_SNP [dm3] 2L_15015162_SNP [dm6]	A	G	1.736e^-4	1	INTERGENIC
2L	16191810	2L_16191810_SNP [dm3] 2L_16191810_SNP [dm6]	C	G	1.772e^-4	1	INTERGENIC
2R	6461161	2R_6461161_SNP [dm3] 2R_10573656_SNP [dm6]	C	T	1.776e^-4	1	INTRON psq
2L	12958477	2L_12958477_SNP [dm3] 2L_12958477_SNP [dm6]	G	T	1.777e^-4	1	INTERGENIC
X	12474048	X_12474048_SNP [dm3] X_12580015_SNP [dm6]	C	A	1.778e^-4	1	INTRON CG11138	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	21243865	X_21243865_SNP [dm3] X_21372838_SNP [dm6]	G	A	1.778e^-4	1	UTR_3_PRIME waw & 1 other DOWNSTREAM CR45611 INTRON CR45612
3L	3915249	3L_3915249_SNP [dm3] 3L_3915249_SNP [dm6]	G	C	1.793e^-4	1	INTRON Eip63F-1
X	17171393	X_17171393_SNP [dm3] X_17277360_SNP [dm6]	T	C	1.803e^-4	1	INTRON f
3R	26781231	3R_26781231_SNP [dm3] 3R_30955509_SNP [dm6]	T	C	1.814e^-4	1	INTERGENIC
3L	3643689	3L_3643689_SNP [dm3] 3L_3643689_SNP [dm6]	T	A	1.832e^-4	1	INTRON dar1
2L	15407385	2L_15407385_SNP [dm3] 2L_15407385_SNP [dm6]	G	A	1.840e^-4	1	INTERGENIC
2L	16191813	2L_16191813_SNP [dm3] 2L_16191813_SNP [dm6]	A	T	1.840e^-4	1	INTERGENIC
3R	26256285	3R_26256285_SNP [dm3] 3R_30430563_SNP [dm6]	T	C	1.842e^-4	1	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
2L	5257504	2L_5257504_SNP [dm3] 2L_5257504_SNP [dm6]	T	G	1.859e^-4	1	INTRON tkv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8554906	3R_8554906_SNP [dm3] 3R_12729184_SNP [dm6]	G	C	1.867e^-4	1	DOWNSTREAM CR44231 INTERGENIC
3R	10226284	3R_10226284_SNP [dm3] 3R_14400562_SNP [dm6]	G	A	1.869e^-4	1	INTRON cv-c
2R	12825821	2R_12825821_SNP [dm3] 2R_16938316_SNP [dm6]	T	G	1.873e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3R	20450482	3R_20450482_SNP [dm3] 3R_24624760_SNP [dm6]	G	T	1.880e^-4	1	SYNONYMOUS_CODING Syx18 UPSTREAM atl DOWNSTREAM mld
3R	7177502	3R_7177502_SNP [dm3] 3R_11351780_SNP [dm6]	A	G	1.883e^-4	1	INTRON pros & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	15002057	3R_15002057_SNP [dm3] 3R_19176335_SNP [dm6]	G	A	1.889e^-4	1	UPSTREAM CG14282 INTERGENIC
2R	12440377	2R_12440377_SNP [dm3] 2R_16552872_SNP [dm6]	G	C	1.914e^-4	1	INTRON Syn2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7601146	2R_7601146_SNP [dm3] 2R_11713641_SNP [dm6]	T	A	1.915e^-4	1	INTRON pyr
2L	15014740	2L_15014740_SNP [dm3] 2L_15014740_SNP [dm6]	A	G	1.920e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15051327	2R_15051327_SNP [dm3] 2R_19163822_SNP [dm6]	C	G	1.942e^-4	1	UPSTREAM CG10737 DOWNSTREAM ena INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	15215045	3L_15215045_SNP [dm3] 3L_15221945_SNP [dm6]	T	C	1.943e^-4	1	INTERGENIC
2L	2287185	2L_2287185_SNP [dm3] 2L_2287185_SNP [dm6]	A	G	1.945e^-4	1	UTR_3_PRIME CG42658 UPSTREAM CG31681
3R	15002048	3R_15002048_SNP [dm3] 3R_19176326_SNP [dm6]	C	G	1.946e^-4	1	UPSTREAM CG14282 INTERGENIC
3R	3882763	3R_3882763_SNP [dm3] 3R_8057041_SNP [dm6]	C	A	1.956e^-4	1	INTERGENIC
2L	6800368	2L_6800368_SNP [dm3] 2L_6800368_SNP [dm6]	T	A	1.956e^-4	1	UTR_3_PRIME CG17376 DOWNSTREAM CR43610 & 2 others INTRON CG17376	regulatory region REDfly_CRMs
2R	18023727	2R_18023727_INS [dm3] 2R_22136222_INS [dm6]	T	TATAT	1.972e^-4	1	UPSTREAM a INTERGENIC
3L	2770051	3L_2770051_SNP [dm3] 3L_2770051_SNP [dm6]	T	C	1.974e^-4	1	SYNONYMOUS_CODING CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3889377	3R_3889377_INS [dm3] 3R_8063655_INS [dm6]	T	TCGA	1.975e^-4	1	INTRON mAChR-B
2L	6799891	2L_6799891_SNP [dm3] 2L_6799891_SNP [dm6]	A	T	1.978e^-4	1	DOWNSTREAM CG17376 & 2 others INTERGENIC	regulatory region REDfly_CRMs
X	17460606	X_17460606_SNP [dm3] X_17566573_SNP [dm6]	C	G	2.016e^-4	1	UTR_3_PRIME ppk23 DOWNSTREAM ppk23
3L	2778655	3L_2778655_SNP [dm3] 3L_2778655_SNP [dm6]	A	C	2.017e^-4	1	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15288443	2L_15288443_SNP [dm3] 2L_15288443_SNP [dm6]	C	A	2.022e^-4	1	INTERGENIC
3L	4384062	3L_4384062_SNP [dm3] 3L_4384062_SNP [dm6]	G	A	2.023e^-4	1	UPSTREAM slow INTERGENIC
2R	14871562	2R_14871562_SNP [dm3] 2R_18984057_SNP [dm6]	T	C	2.028e^-4	1	INTERGENIC
X	7373251	X_7373251_DEL [dm3] X_7479218_DEL [dm6]	AA	A	2.028e^-4	1	INTERGENIC
3L	9186554	3L_9186554_SNP [dm3] 3L_9193454_SNP [dm6]	G	A	2.035e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	15120882	X_15120882_SNP [dm3] X_15226849_SNP [dm6]	G	A	2.035e^-4	1	DOWNSTREAM CR44430 INTERGENIC
2L	15288432	2L_15288432_SNP [dm3] 2L_15288432_SNP [dm6]	G	T	2.041e^-4	1	INTERGENIC
2L	15288425	2L_15288425_MNP [dm3] 2L_15288425_MNP [dm6]	TAC	GTT	2.042e^-4	1	INTERGENIC
2L	15288428	2L_15288428_INS [dm3] 2L_15288428_INS [dm6]	T	TAG	2.042e^-4	1	INTERGENIC
2L	15288438	2L_15288438_SNP [dm3] 2L_15288438_SNP [dm6]	A	T	2.042e^-4	1	INTERGENIC
2L	15288439	2L_15288439_INS [dm3] 2L_15288439_INS [dm6]	C	CTATT	2.042e^-4	1	INTERGENIC
2L	15288446	2L_15288446_SNP [dm3] 2L_15288446_SNP [dm6]	A	C	2.042e^-4	1	INTERGENIC
3R	10227723	3R_10227723_SNP [dm3] 3R_14402001_SNP [dm6]	C	G	2.043e^-4	1	INTRON cv-c
2R	12073283	2R_12073283_SNP [dm3] 2R_16185778_SNP [dm6]	A	T	2.056e^-4	1	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12339739	2R_12339739_SNP [dm3] 2R_16452234_SNP [dm6]	T	C	2.057e^-4	1	INTERGENIC
2L	10491784	2L_10491784_SNP [dm3] 2L_10491784_SNP [dm6]	T	C	2.071e^-4	1	UPSTREAM CG13144 DOWNSTREAM Myo31DF INTERGENIC
3R	10162768	3R_10162768_DEL [dm3] 3R_14337046_DEL [dm6]	TAAA	T	2.072e^-4	1	INTRON NK7.1	TF binding site mE1_TFBS_kn
3R	16321306	3R_16321306_SNP [dm3] 3R_20495584_SNP [dm6]	C	G	2.075e^-4	1	INTERGENIC
2L	12644577	2L_12644577_SNP [dm3] 2L_12644577_SNP [dm6]	A	T	2.085e^-4	1	INTRON Ref2
2L	15402020	2L_15402020_SNP [dm3] 2L_15402020_SNP [dm6]	A	G	2.095e^-4	1	INTERGENIC
X	12837803	X_12837803_SNP [dm3] X_12943770_SNP [dm6]	T	C	2.103e^-4	1	INTRON fne
3R	3875534	3R_3875534_SNP [dm3] 3R_8049812_SNP [dm6]	T	G	2.111e^-4	1	DOWNSTREAM CG43618 INTRON CG43060 & 1 other
3R	3882804	3R_3882804_SNP [dm3] 3R_8057082_SNP [dm6]	G	A	2.113e^-4	1	INTERGENIC
2R	11663718	2R_11663718_SNP [dm3] 2R_15776213_SNP [dm6]	G	T	2.117e^-4	1	UPSTREAM Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_chinmo
2R	16036577	2R_16036577_SNP [dm3] 2R_20149072_SNP [dm6]	A	G	2.127e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	7373190	X_7373190_DEL [dm3] X_7479157_DEL [dm6]	AA	A	2.139e^-4	1	INTERGENIC
3L	6110039	3L_6110039_SNP [dm3] 3L_6116939_SNP [dm6]	G	A	2.144e^-4	1	INTRON Ets65A
3R	9365938	3R_9365938_SNP [dm3] 3R_13540216_SNP [dm6]	C	A	2.144e^-4	1	INTERGENIC
3L	4384059	3L_4384059_SNP [dm3] 3L_4384059_SNP [dm6]	C	T	2.161e^-4	1	UPSTREAM slow INTERGENIC
2R	12825742	2R_12825742_SNP [dm3] 2R_16938237_SNP [dm6]	T	A	2.173e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	13826237	2R_13826237_SNP [dm3] 2R_17938732_SNP [dm6]	C	T	2.188e^-4	1	INTERGENIC
2L	15102065	2L_15102065_SNP [dm3] 2L_15102065_SNP [dm6]	T	A	2.199e^-4	1	INTERGENIC
3L	10043838	3L_10043838_SNP [dm3] 3L_10050738_SNP [dm6]	C	T	2.207e^-4	1	INTRON dpr6
3R	20216934	3R_20216934_SNP [dm3] 3R_24391212_SNP [dm6]	T	A	2.207e^-4	1	NON_SYNONYMOUS_CODING CG13615 UPSTREAM CG5768
2L	15005205	2L_15005205_INS [dm3] 2L_15005205_INS [dm6]	A	ATGATTAGCCA...	2.209e^-4	1	UPSTREAM dyn-p25 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3330274	2L_3330274_SNP [dm3] 2L_3330274_SNP [dm6]	A	C	2.213e^-4	1	UPSTREAM CG3285 DOWNSTREAM CG33282 INTERGENIC
3R	26177575	3R_26177575_SNP [dm3] 3R_30351853_SNP [dm6]	C	A	2.214e^-4	1	INTRON hdc
2R	12562628	2R_12562628_SNP [dm3] 2R_16675123_SNP [dm6]	T	C	2.215e^-4	1	INTRON CG30463
3L	5071154	3L_5071154_SNP [dm3] 3L_5071154_SNP [dm6]	G	T	2.220e^-4	1	INTRON Con
3R	3757837	3R_3757837_SNP [dm3] 3R_7932115_SNP [dm6]	C	T	2.221e^-4	1	UTR_3_PRIME dsx INTRON dsx
3L	4806411	3L_4806411_SNP [dm3] 3L_4806411_SNP [dm6]	G	A	2.225e^-4	1	SYNONYMOUS_CODING CG18808 DOWNSTREAM Dhc64C	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6109991	3L_6109991_SNP [dm3] 3L_6116891_SNP [dm6]	A	C	2.263e^-4	1	INTRON Ets65A
3L	5476097	3L_5476097_SNP [dm3] 3L_5482997_SNP [dm6]	T	A	2.284e^-4	1	SYNONYMOUS_CODING CG4835	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25052280	3R_25052280_SNP [dm3] 3R_29226558_SNP [dm6]	G	T	2.286e^-4	1	SYNONYMOUS_CODING CG14507 DOWNSTREAM Brd8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13153980	2L_13153980_SNP [dm3] 2L_13153980_SNP [dm6]	A	G	2.301e^-4	1	INTERGENIC
2L	15288448	2L_15288448_SNP [dm3] 2L_15288448_SNP [dm6]	C	A	2.302e^-4	1	INTERGENIC
2L	15288454	2L_15288454_INS [dm3] 2L_15288454_INS [dm6]	A	TT	2.302e^-4	1	INTERGENIC
2L	15288458	2L_15288458_SNP [dm3] 2L_15288458_SNP [dm6]	T	A	2.302e^-4	1	INTERGENIC
2L	15288460	2L_15288460_SNP [dm3] 2L_15288460_SNP [dm6]	A	T	2.302e^-4	1	INTERGENIC
2L	15288463	2L_15288463_MNP [dm3] 2L_15288463_MNP [dm6]	TTGAGT	GCACTA	2.302e^-4	1	INTERGENIC
2L	15288471	2L_15288471_SNP [dm3] 2L_15288471_SNP [dm6]	G	A	2.302e^-4	1	INTERGENIC
2L	15288477	2L_15288477_SNP [dm3] 2L_15288477_SNP [dm6]	T	A	2.302e^-4	1	INTERGENIC
2L	15288491	2L_15288491_SNP [dm3] 2L_15288491_SNP [dm6]	T	A	2.302e^-4	1	INTERGENIC
2L	15288452	2L_15288452_SNP [dm3] 2L_15288452_SNP [dm6]	G	T	2.313e^-4	1	INTERGENIC
2L	553752	2L_553752_SNP [dm3] 2L_553752_SNP [dm6]	A	C	2.318e^-4	1	UTR_3_PRIME rempA UPSTREAM Ets21C
2R	3165892	2R_3165892_SNP [dm3] 2R_7278387_SNP [dm6]	T	C	2.318e^-4	1	UPSTREAM Incenp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15014712	2L_15014712_SNP [dm3] 2L_15014712_SNP [dm6]	A	C	2.318e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12825740	2R_12825740_SNP [dm3] 2R_16938235_SNP [dm6]	G	A	2.320e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3R	27227791	3R_27227791_SNP [dm3] 3R_31402069_SNP [dm6]	T	A	2.345e^-4	1	SYNONYMOUS_CODING CG11337 DOWNSTREAM Gcn2	TF binding site mE1_TFBS_cad
3L	5467996	3L_5467996_SNP [dm3] 3L_5474896_SNP [dm6]	T	A	2.355e^-4	1	INTERGENIC
2L	7042083	2L_7042083_SNP [dm3] 2L_7042083_SNP [dm6]	T	G	2.355e^-4	1	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15288482	2L_15288482_SNP [dm3] 2L_15288482_SNP [dm6]	C	T	2.387e^-4	1	INTERGENIC
2R	12181193	2R_12181193_SNP [dm3] 2R_16293688_SNP [dm6]	G	A	2.390e^-4	1	SYNONYMOUS_CODING CG7747 UPSTREAM Atg9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9363256	2L_9363256_SNP [dm3] 2L_9363256_SNP [dm6]	T	G	2.392e^-4	1	INTERGENIC
2L	5511302	2L_5511302_SNP [dm3] 2L_5511302_SNP [dm6]	T	A	2.394e^-4	1	INTERGENIC
3L	14192415	3L_14192415_SNP [dm3] 3L_14199315_SNP [dm6]	C	G	2.395e^-4	1	INTRON nuf
2L	13672421	2L_13672421_SNP [dm3] 2L_13672421_SNP [dm6]	G	C	2.398e^-4	1	UTR_3_PRIME CG18507 DOWNSTREAM CG18507
3L	5476103	3L_5476103_SNP [dm3] 3L_5483003_SNP [dm6]	A	G	2.410e^-4	1	SYNONYMOUS_CODING CG4835	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22604398	3R_22604398_SNP [dm3] 3R_26778676_SNP [dm6]	C	A	2.429e^-4	1	INTERGENIC
3R	20813333	3R_20813333_SNP [dm3] 3R_24987611_SNP [dm6]	A	T	2.452e^-4	1	INTRON tnc
2L	553810	2L_553810_SNP [dm3] 2L_553810_SNP [dm6]	G	A	2.468e^-4	1	UTR_3_PRIME rempA UPSTREAM Ets21C
X	2595135	X_2595135_SNP [dm3] X_2701102_SNP [dm6]	G	A	2.468e^-4	1	DOWNSTREAM Csat & 1 other INTERGENIC
2R	8936585	2R_8936585_INS [dm3] 2R_13049080_INS [dm6]	A	AAA	2.476e^-4	1	DOWNSTREAM CG13324 INTERGENIC
3R	8719271	3R_8719271_SNP [dm3] 3R_12893549_SNP [dm6]	T	C	2.483e^-4	1	DOWNSTREAM CR33929 & 1 other INTERGENIC
2R	4663191	2R_4663191_SNP [dm3] 2R_8775686_SNP [dm6]	C	T	2.485e^-4	1	INTERGENIC
3R	5278030	3R_5278030_DEL [dm3] 3R_9452308_DEL [dm6]	AAAAA	A	2.489e^-4	1	UTR_3_PRIME ps
3R	14705753	3R_14705753_SNP [dm3] 3R_18880031_SNP [dm6]	T	A	2.507e^-4	1	INTERGENIC
3L	5468131	3L_5468131_SNP [dm3] 3L_5475031_SNP [dm6]	T	C	2.521e^-4	1	INTERGENIC
3R	3835789	3R_3835789_SNP [dm3] 3R_8010067_SNP [dm6]	C	T	2.533e^-4	1	SYNONYMOUS_CODING CG3223 UPSTREAM CG11052 DOWNSTREAM CG10435	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
2L	4186488	2L_4186488_SNP [dm3] 2L_4186488_SNP [dm6]	T	C	2.542e^-4	1	SYNONYMOUS_CODING CG31961 DOWNSTREAM CR44057	TF binding site BDTNP1_TFBS_dl
3R	13422808	3R_13422808_SNP [dm3] 3R_17597086_SNP [dm6]	A	G	2.555e^-4	1	DOWNSTREAM Sgs5 & 1 other INTERGENIC
X	12934445	X_12934445_SNP [dm3] X_13040412_SNP [dm6]	A	G	2.571e^-4	1	INTRON rad	TF binding site mE1_TFBS_HSA
3L	8054793	3L_8054793_SNP [dm3] 3L_8061693_SNP [dm6]	C	T	2.573e^-4	1	UPSTREAM tRNA:CR32360 INTERGENIC
3L	6110045	3L_6110045_SNP [dm3] 3L_6116945_SNP [dm6]	A	G	2.599e^-4	1	INTRON Ets65A
2R	6741137	2R_6741137_SNP [dm3] 2R_10853632_SNP [dm6]	G	T	2.604e^-4	1	SPLICE_SITE_REGION CR45136 UTR_5_PRIME CG30015 INTRON CG30015 EXON CR45136	TF binding site BDTNP1_TFBS_twi
2R	13501963	2R_13501963_SNP [dm3] 2R_17614458_SNP [dm6]	G	A	2.610e^-4	1	INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	5066314	2L_5066314_SNP [dm3] 2L_5066314_SNP [dm6]	A	C	2.614e^-4	1	INTRON qtc
2R	12181247	2R_12181247_SNP [dm3] 2R_16293742_SNP [dm6]	C	T	2.622e^-4	1	SYNONYMOUS_CODING CG7747 UPSTREAM Atg9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8371128	2L_8371128_SNP [dm3] 2L_8371128_SNP [dm6]	T	C	2.636e^-4	1	UTR_5_PRIME CG17292 UPSTREAM CR45341 INTRON CG17292
2R	5137019	2R_5137019_SNP [dm3] 2R_9249514_SNP [dm6]	A	C	2.639e^-4	1	INTERGENIC
2L	8900136	2L_8900136_DEL [dm3] 2L_8900136_DEL [dm6]	ACCTAAAA	A	2.641e^-4	1	INTRON CG34398
2L	9626710	2L_9626710_SNP [dm3] 2L_9626710_SNP [dm6]	C	T	2.649e^-4	1	INTERGENIC
2L	6595841	2L_6595841_SNP [dm3] 2L_6595841_SNP [dm6]	T	A	2.655e^-4	1	INTRON CG11319
3R	25491028	3R_25491028_SNP [dm3] 3R_29665306_SNP [dm6]	C	T	2.671e^-4	1	SYNONYMOUS_CODING ppk21	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7061753	2L_7061753_SNP [dm3] 2L_7061753_SNP [dm6]	C	T	2.680e^-4	1	UTR_3_PRIME Mnn1 UPSTREAM CG31907
2L	15651050	2L_15651050_SNP [dm3] 2L_15651050_SNP [dm6]	T	C	2.680e^-4	1	SPLICE_SITE_REGION CG4587 INTRON CG4587
2R	12073279	2R_12073279_SNP [dm3] 2R_16185774_SNP [dm6]	T	A	2.682e^-4	1	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	9495682	X_9495682_SNP [dm3] X_9601649_SNP [dm6]	C	T	2.686e^-4	1	INTRON Gga	TF binding site BDTNP1_TFBS_dl
X	17577007	X_17577007_SNP [dm3] X_17682974_SNP [dm6]	A	G	2.689e^-4	1	UPSTREAM chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8706581	3R_8706581_SNP [dm3] 3R_12880859_SNP [dm6]	G	A	2.697e^-4	1	INTERGENIC
X	7373066	X_7373066_SNP [dm3] X_7479033_SNP [dm6]	A	G	2.706e^-4	1	INTERGENIC
3R	25198339	3R_25198339_SNP [dm3] 3R_29372617_SNP [dm6]	G	A	2.711e^-4	1	INTERGENIC
3L	10916315	3L_10916315_DEL [dm3] 3L_10923215_DEL [dm6]	TTAGTT	T	2.713e^-4	1	INTERGENIC
2L	6595537	2L_6595537_SNP [dm3] 2L_6595537_SNP [dm6]	A	G	2.713e^-4	1	INTRON CG11319
2L	14499278	2L_14499278_SNP [dm3] 2L_14499278_SNP [dm6]	C	A	2.732e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	14006624	2L_14006624_SNP [dm3] 2L_14006624_SNP [dm6]	G	A	2.733e^-4	1	INTERGENIC
2R	12825818	2R_12825818_SNP [dm3] 2R_16938313_SNP [dm6]	C	A	2.739e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3L	9186552	3L_9186552_SNP [dm3] 3L_9193452_SNP [dm6]	G	A	2.755e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10044268	2L_10044268_SNP [dm3] 2L_10044268_SNP [dm6]	G	T	2.757e^-4	1	INTERGENIC
3L	8850557	3L_8850557_SNP [dm3] 3L_8857457_SNP [dm6]	T	C	2.783e^-4	1	INTRON dally
3R	3747449	3R_3747449_SNP [dm3] 3R_7921727_SNP [dm6]	C	T	2.788e^-4	1	SYNONYMOUS_CODING lds UPSTREAM scaRNA:MeU2-C41
3R	25661407	3R_25661407_SNP [dm3] 3R_29835685_SNP [dm6]	T	C	2.815e^-4	1	UTR_3_PRIME CG42592 UPSTREAM CG15510 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	17393618	X_17393618_SNP [dm3] X_17499585_SNP [dm6]	C	T	2.817e^-4	1	INTRON CG43658
2R	12482319	2R_12482319_SNP [dm3] 2R_16594814_SNP [dm6]	C	T	2.855e^-4	1	UPSTREAM CG8306 DOWNSTREAM CG8303 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15329509	2R_15329509_INS [dm3] 2R_19442004_INS [dm6]	C	CC	2.863e^-4	1	UPSTREAM RpL11 DOWNSTREAM Spt5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	8423903	X_8423903_SNP [dm3] X_8529870_SNP [dm6]	A	T	2.868e^-4	1	UPSTREAM PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_dl
3L	2777944	3L_2777944_SNP [dm3] 3L_2777944_SNP [dm6]	C	T	2.870e^-4	1	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13623415	2L_13623415_SNP [dm3] 2L_13623415_SNP [dm6]	C	T	2.898e^-4	1	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	15215365	3L_15215365_SNP [dm3] 3L_15222265_SNP [dm6]	A	T	2.899e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6076957	2R_6076957_SNP [dm3] 2R_10189452_SNP [dm6]	T	G	2.902e^-4	1	INTRON KCNQ
X	8332707	X_8332707_SNP [dm3] X_8438674_SNP [dm6]	C	T	2.908e^-4	1	UPSTREAM CG1440 & 1 other INTRON CG1440	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17654319	X_17654319_SNP [dm3] X_17760286_SNP [dm6]	C	T	2.908e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	4377429	3L_4377429_SNP [dm3] 3L_4377429_SNP [dm6]	T	A	2.914e^-4	1	INTRON DopEcR EXON CR44360
3R	13426164	3R_13426164_SNP [dm3] 3R_17600442_SNP [dm6]	C	A	2.926e^-4	1	INTERGENIC
2L	16248095	2L_16248095_INS [dm3] 2L_16248095_INS [dm6]	A	ATTA	2.929e^-4	1	INTRON PRL-1
X	3149989	X_3149989_SNP [dm3] X_3255956_SNP [dm6]	C	T	2.936e^-4	1	UPSTREAM dnc INTRON dnc
X	14622886	X_14622886_SNP [dm3] X_14728853_SNP [dm6]	C	T	2.951e^-4	1	INTRON NetB
3R	8708437	3R_8708437_SNP [dm3] 3R_12882715_SNP [dm6]	A	T	2.952e^-4	1	INTERGENIC
X	4277309	X_4277309_SNP [dm3] X_4383276_SNP [dm6]	G	A	2.953e^-4	1	DOWNSTREAM CG12688 INTERGENIC
2L	10895151	2L_10895151_SNP [dm3] 2L_10895151_SNP [dm6]	A	C	2.963e^-4	1	EXON CR44491
2L	14551970	2L_14551970_SNP [dm3] 2L_14551970_SNP [dm6]	G	A	2.964e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10916335	3L_10916335_SNP [dm3] 3L_10923235_SNP [dm6]	G	C	2.971e^-4	1	INTERGENIC
3R	3726926	3R_3726926_SNP [dm3] 3R_7901204_SNP [dm6]	G	A	2.984e^-4	1	DOWNSTREAM wtrw INTRON mRpS9
3L	10916295	3L_10916295_SNP [dm3] 3L_10923195_SNP [dm6]	A	C	2.985e^-4	1	INTERGENIC
2R	11563073	2R_11563073_SNP [dm3] 2R_15675568_SNP [dm6]	A	G	2.986e^-4	1	UTR_5_PRIME fus UPSTREAM CR45143 INTRON fus	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3L	4805502	3L_4805502_SNP [dm3] 3L_4805502_SNP [dm6]	C	T	2.990e^-4	1	UPSTREAM CG7509 DOWNSTREAM CG18808 INTERGENIC
3L	5543846	3L_5543846_INS [dm3] 3L_5550746_INS [dm6]	A	AA	3.022e^-4	1	INTRON CG10625
3L	13918918	3L_13918918_SNP [dm3] 3L_13925818_SNP [dm6]	A	G	3.026e^-4	1	UPSTREAM Rgl DOWNSTREAM CG8833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7075694	2L_7075694_MNP [dm3] 2L_7075694_MNP [dm6]	TGG	CTA	3.027e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8235164	2L_8235164_SNP [dm3] 2L_8235164_SNP [dm6]	C	A	3.031e^-4	1	INTRON Pvr
3L	2778046	3L_2778046_SNP [dm3] 3L_2778046_SNP [dm6]	G	A	3.036e^-4	1	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6055538	X_6055538_SNP [dm3] X_6161505_SNP [dm6]	A	G	3.045e^-4	1	INTRON Ca-alpha1T
2L	9033817	2L_9033817_SNP [dm3] 2L_9033817_SNP [dm6]	T	C	3.060e^-4	1	INTERGENIC
2L	7717558	2L_7717558_SNP [dm3] 2L_7717558_SNP [dm6]	C	T	3.064e^-4	1	NON_SYNONYMOUS_CODING CG13793 UPSTREAM CG33296
3R	9784287	3R_9784287_SNP [dm3] 3R_13958565_SNP [dm6]	A	G	3.068e^-4	1	UPSTREAM Ipp INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	9669602	3L_9669602_SNP [dm3] 3L_9676502_SNP [dm6]	T	C	3.074e^-4	1	INTRON fry	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12383121	2L_12383121_SNP [dm3] 2L_12383121_SNP [dm6]	C	T	3.077e^-4	1	INTRON bru-2
3R	20217841	3R_20217841_SNP [dm3] 3R_24392119_SNP [dm6]	A	G	3.086e^-4	1	UPSTREAM CG13616 DOWNSTREAM CG13615 INTERGENIC
2L	11874236	2L_11874236_SNP [dm3] 2L_11874236_SNP [dm6]	T	A	3.111e^-4	1	INTRON Pde1c
2R	10684241	2R_10684241_SNP [dm3] 2R_14796736_SNP [dm6]	A	T	3.136e^-4	1	INTRON kn
X	18451174	X_18451174_SNP [dm3] X_18557141_SNP [dm6]	T	G	3.138e^-4	1	INTRON Bx
3L	5543693	3L_5543693_SNP [dm3] 3L_5550593_SNP [dm6]	T	A	3.138e^-4	1	INTRON CG10625
3R	14040987	3R_14040987_SNP [dm3] 3R_18215265_SNP [dm6]	T	C	3.139e^-4	1	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
3L	6109985	3L_6109985_SNP [dm3] 3L_6116885_SNP [dm6]	C	A	3.139e^-4	1	INTRON Ets65A
2R	5136761	2R_5136761_DEL [dm3] 2R_9249256_DEL [dm6]	TCGATCTCT	GAAGAGA	3.149e^-4	1	INTERGENIC
3L	5468133	3L_5468133_SNP [dm3] 3L_5475033_SNP [dm6]	C	T	3.162e^-4	1	INTERGENIC
2L	5695748	2L_5695748_SNP [dm3] 2L_5695748_SNP [dm6]	G	A	3.177e^-4	1	INTERGENIC
3L	2798186	3L_2798186_SNP [dm3] 3L_2798186_SNP [dm6]	G	A	3.177e^-4	1	INTRON CG43444
X	14789761	X_14789761_SNP [dm3] X_14895728_SNP [dm6]	C	T	3.184e^-4	1	INTRON Flo2 & 1 other
2R	12825574	2R_12825574_SNP [dm3] 2R_16938069_SNP [dm6]	T	A	3.188e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12825601	2R_12825601_SNP [dm3] 2R_16938096_SNP [dm6]	T	A	3.188e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12825621	2R_12825621_SNP [dm3] 2R_16938116_SNP [dm6]	A	G	3.188e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12825677	2R_12825677_SNP [dm3] 2R_16938172_SNP [dm6]	T	G	3.188e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12825684	2R_12825684_SNP [dm3] 2R_16938179_SNP [dm6]	A	G	3.188e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12825686	2R_12825686_DEL [dm3] 2R_16938181_DEL [dm6]	GGGGTGTTGTGCTTCAGCTT...	T	3.188e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3L	2769828	3L_2769828_SNP [dm3] 3L_2769828_SNP [dm6]	C	T	3.188e^-4	1	SYNONYMOUS_CODING CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14775644	2R_14775644_SNP [dm3] 2R_18888139_SNP [dm6]	A	T	3.189e^-4	1	INTRON sano
2R	7416504	2R_7416504_SNP [dm3] 2R_11528999_SNP [dm6]	T	G	3.193e^-4	1	UPSTREAM en INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	5000418	X_5000418_SNP [dm3] X_5106385_SNP [dm6]	T	C	3.196e^-4	1	INTRON rg & 1 other
2R	16404189	2R_16404189_SNP [dm3] 2R_20516684_SNP [dm6]	A	C	3.202e^-4	1	INTERGENIC
2L	1305552	2L_1305552_SNP [dm3] 2L_1305552_SNP [dm6]	T	C	3.207e^-4	1	INTERGENIC
3L	7863797	3L_7863797_SNP [dm3] 3L_7870697_SNP [dm6]	G	C	3.212e^-4	1	INTRON CG32365
2L	7040556	2L_7040556_SNP [dm3] 2L_7040556_SNP [dm6]	A	G	3.212e^-4	1	UTR_5_PRIME milt
3L	1632657	3L_1632657_SNP [dm3] 3L_1632657_SNP [dm6]	G	A	3.212e^-4	1	INTRON nSyb
3R	3754374	3R_3754374_SNP [dm3] 3R_7928652_SNP [dm6]	T	C	3.215e^-4	1	INTRON dsx	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20423612	2L_20423612_SNP [dm3] 2L_20423612_SNP [dm6]	T	C	3.216e^-4	1	DOWNSTREAM Arpc2 INTRON CG15130
3L	10826598	3L_10826598_SNP [dm3] 3L_10833498_SNP [dm6]	T	A	3.231e^-4	1	INTERGENIC
3L	12486923	3L_12486923_SNP [dm3] 3L_12493823_SNP [dm6]	C	T	3.231e^-4	1	DOWNSTREAM CR45682 INTRON CG10657
2R	19339263	2R_19339263_DEL [dm3] 2R_23451740_DEL [dm6]	GT	C	3.253e^-4	1	INTRON CG43795
X	11142230	X_11142230_SNP [dm3] X_11248197_SNP [dm6]	T	A	3.260e^-4	1	UPSTREAM CG15198 INTRON CG44422
3R	13426361	3R_13426361_SNP [dm3] 3R_17600639_SNP [dm6]	C	A	3.262e^-4	1	INTERGENIC
2R	12825620	2R_12825620_SNP [dm3] 2R_16938115_SNP [dm6]	A	C	3.291e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3R	14499857	3R_14499857_SNP [dm3] 3R_18674135_SNP [dm6]	G	T	3.294e^-4	1	NON_SYNONYMOUS_CODING CG7702 DOWNSTREAM CG7705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12825626	2R_12825626_SNP [dm3] 2R_16938121_SNP [dm6]	A	T	3.295e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
X	7377236	X_7377236_SNP [dm3] X_7483203_SNP [dm6]	G	C	3.298e^-4	1	INTERGENIC
2L	2316317	2L_2316317_SNP [dm3] 2L_2316317_SNP [dm6]	G	A	3.308e^-4	1	INTRON CG9967 & 1 other
2R	12181010	2R_12181010_SNP [dm3] 2R_16293505_SNP [dm6]	A	G	3.308e^-4	1	SYNONYMOUS_CODING CG7747 UPSTREAM Atg9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	13673426	3R_13673426_INS [dm3] 3R_17847704_INS [dm6]	A	AT	3.329e^-4	1	INTRON tinc
2R	12181064	2R_12181064_SNP [dm3] 2R_16293559_SNP [dm6]	A	G	3.336e^-4	1	SYNONYMOUS_CODING CG7747 UPSTREAM Atg9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	12825624	2R_12825624_SNP [dm3] 2R_16938119_SNP [dm6]	A	C	3.338e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3R	8900984	3R_8900984_SNP [dm3] 3R_13075262_SNP [dm6]	C	T	3.338e^-4	1	SYNONYMOUS_CODING sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	8597513	3R_8597513_SNP [dm3] 3R_12771791_SNP [dm6]	C	T	3.342e^-4	1	INTRON beat-Vc
2L	7075529	2L_7075529_SNP [dm3] 2L_7075529_SNP [dm6]	T	G	3.349e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad
3R	16525498	3R_16525498_SNP [dm3] 3R_20699776_SNP [dm6]	G	C	3.354e^-4	1	INTRON Oamb
2R	9573284	2R_9573284_SNP [dm3] 2R_13685779_SNP [dm6]	G	C	3.369e^-4	1	INTRON fas
X	7376826	X_7376826_SNP [dm3] X_7482793_SNP [dm6]	T	G	3.370e^-4	1	INTERGENIC
X	16963276	X_16963276_SNP [dm3] X_17069243_SNP [dm6]	A	T	3.372e^-4	1	UTR_3_PRIME CG8949 UPSTREAM CG43077
3L	11127856	3L_11127856_SNP [dm3] 3L_11134756_SNP [dm6]	G	C	3.376e^-4	1	UPSTREAM CG14143 DOWNSTREAM CG42575 INTERGENIC
3R	25198615	3R_25198615_SNP [dm3] 3R_29372893_SNP [dm6]	T	A	3.377e^-4	1	INTERGENIC
X	9723343	X_9723343_SNP [dm3] X_9829310_SNP [dm6]	A	T	3.384e^-4	1	INTRON CG32698
2L	13683682	2L_13683682_DEL [dm3] 2L_13683682_DEL [dm6]	TTCTTGGT	T	3.385e^-4	1	INTRON CG31814
3R	10227591	3R_10227591_SNP [dm3] 3R_14401869_SNP [dm6]	A	T	3.392e^-4	1	INTRON cv-c
2R	12558671	2R_12558671_SNP [dm3] 2R_16671166_SNP [dm6]	T	C	3.404e^-4	1	UPSTREAM CG34458 INTRON CG34457	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4217636	2R_4217636_SNP [dm3] 2R_8330131_SNP [dm6]	A	G	3.408e^-4	1	INTRON pdm3
2L	2025840	2L_2025840_SNP [dm3] 2L_2025840_SNP [dm6]	C	G	3.414e^-4	1	INTRON CG4238
2L	14004547	2L_14004547_SNP [dm3] 2L_14004547_SNP [dm6]	T	A	3.415e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9258199	2L_9258199_SNP [dm3] 2L_9258199_SNP [dm6]	G	C	3.429e^-4	1	INTRON Ggamma30A
2R	12180986	2R_12180986_SNP [dm3] 2R_16293481_SNP [dm6]	C	T	3.432e^-4	1	SYNONYMOUS_CODING CG7747 UPSTREAM Atg9	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	5309484	2R_5309484_SNP [dm3] 2R_9421979_SNP [dm6]	A	C	3.475e^-4	1	UTR_3_PRIME CG13955	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	10983627	2L_10983627_SNP [dm3] 2L_10983627_SNP [dm6]	A	C	3.477e^-4	1	INTRON piwi
2L	10983632	2L_10983632_INS [dm3] 2L_10983632_INS [dm6]	G	GT	3.477e^-4	1	INTRON piwi
3L	7169561	3L_7169561_INS [dm3] 3L_7176461_INS [dm6]	A	AC	3.484e^-4	1	INTRON Dscam2
2R	9967734	2R_9967734_SNP [dm3] 2R_14080229_SNP [dm6]	G	T	3.499e^-4	1	INTRON Prosap
X	6111484	X_6111484_DEL [dm3] X_6217451_DEL [dm6]	AACGGG	A	3.500e^-4	1	UTR_3_PRIME Btd
X	6111493	X_6111493_DEL [dm3] X_6217460_DEL [dm6]	AC	A	3.500e^-4	1	UTR_3_PRIME Btd
X	6111500	X_6111500_SNP [dm3] X_6217467_SNP [dm6]	T	A	3.500e^-4	1	UTR_3_PRIME Btd
X	7376784	X_7376784_SNP [dm3] X_7482751_SNP [dm6]	C	A	3.501e^-4	1	INTERGENIC
3L	10588633	3L_10588633_SNP [dm3] 3L_10595533_SNP [dm6]	G	T	3.506e^-4	1	INTERGENIC
X	6111502	X_6111502_SNP [dm3] X_6217469_SNP [dm6]	C	G	3.514e^-4	1	UTR_3_PRIME Btd
2L	14001681	2L_14001681_SNP [dm3] 2L_14001681_SNP [dm6]	T	C	3.524e^-4	1	UPSTREAM rk INTERGENIC
2R	14598918	2R_14598918_SNP [dm3] 2R_18711413_SNP [dm6]	A	G	3.525e^-4	1	UPSTREAM CG15087 EXON pncr016:2R
2L	6799881	2L_6799881_SNP [dm3] 2L_6799881_SNP [dm6]	G	T	3.529e^-4	1	DOWNSTREAM CG17376 & 2 others INTERGENIC	regulatory region REDfly_CRMs
3R	9133366	3R_9133366_SNP [dm3] 3R_13307644_SNP [dm6]	C	T	3.533e^-4	1	INTRON CG32473
2L	1563299	2L_1563299_SNP [dm3] 2L_1563299_SNP [dm6]	G	A	3.542e^-4	1	INTRON haf	TF binding site mE1_TFBS_inv
3R	3716577	3R_3716577_SNP [dm3] 3R_7890855_SNP [dm6]	C	G	3.558e^-4	1	UPSTREAM wtrw DOWNSTREAM CG10092 INTRON mRpS9
2R	14598896	2R_14598896_SNP [dm3] 2R_18711391_SNP [dm6]	A	T	3.569e^-4	1	UPSTREAM CG15087 EXON pncr016:2R
2L	7070379	2L_7070379_SNP [dm3] 2L_7070379_SNP [dm6]	T	C	3.570e^-4	1	DOWNSTREAM CG11289 INTRON Pvf2	TF binding site mE1_TFBS_cad
3L	14193721	3L_14193721_SNP [dm3] 3L_14200621_SNP [dm6]	G	T	3.578e^-4	1	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3813939	3R_3813939_SNP [dm3] 3R_7988217_SNP [dm6]	C	T	3.578e^-4	1	INTRON CG2781
3L	5303222	3L_5303222_SNP [dm3] 3L_5310122_SNP [dm6]	G	A	3.584e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7108692	3L_7108692_SNP [dm3] 3L_7115592_SNP [dm6]	T	C	3.599e^-4	1	INTRON form3
3R	4203583	3R_4203583_INS [dm3] 3R_8377861_INS [dm6]	G	GG	3.607e^-4	1	INTRON CG45263
3L	10808001	3L_10808001_DEL [dm3] 3L_10814901_DEL [dm6]	GCG	G	3.610e^-4	1	UTR_5_PRIME CG42831
2L	517737	2L_517737_SNP [dm3] 2L_517737_SNP [dm6]	G	A	3.611e^-4	1	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	3748915	3R_3748915_SNP [dm3] 3R_7923193_SNP [dm6]	G	A	3.621e^-4	1	SYNONYMOUS_CODING lds
3R	3771667	3R_3771667_SNP [dm3] 3R_7945945_SNP [dm6]	A	G	3.625e^-4	1	INTRON dsx
3R	25198337	3R_25198337_SNP [dm3] 3R_29372615_SNP [dm6]	A	C	3.627e^-4	1	INTERGENIC
2L	7441706	2L_7441706_SNP [dm3] 2L_7441706_SNP [dm6]	C	T	3.632e^-4	1	START_GAINED CG5973 UTR_5_PRIME CG5973 INTRON CG5973
2R	16340075	2R_16340075_SNP [dm3] 2R_20452570_SNP [dm6]	T	A	3.636e^-4	1	INTRON CG12484
3L	9669708	3L_9669708_SNP [dm3] 3L_9676608_SNP [dm6]	G	A	3.639e^-4	1	INTRON fry	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6317979	3R_6317979_SNP [dm3] 3R_10492257_SNP [dm6]	C	T	3.652e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
3L	416257	3L_416257_SNP [dm3] 3L_416257_SNP [dm6]	A	G	3.654e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8557952	3R_8557952_SNP [dm3] 3R_12732230_SNP [dm6]	C	A	3.656e^-4	1	INTERGENIC
2L	4859867	2L_4859867_SNP [dm3] 2L_4859867_SNP [dm6]	G	A	3.665e^-4	1	INTRON pog
2L	1563289	2L_1563289_INS [dm3] 2L_1563289_INS [dm6]	T	TACAT	3.684e^-4	1	INTRON haf	TF binding site mE1_TFBS_inv
3L	4562462	3L_4562462_DEL [dm3] 3L_4562462_DEL [dm6]	TTGAGATAAATGTGAATTTA...	T	3.687e^-4	1	INTRON CG42540
2L	11966881	2L_11966881_SNP [dm3] 2L_11966881_SNP [dm6]	G	A	3.688e^-4	1	INTRON CR43314
3R	26927033	3R_26927033_SNP [dm3] 3R_31101311_SNP [dm6]	A	T	3.710e^-4	1	UPSTREAM CG15553 INTERGENIC
2L	6800308	2L_6800308_SNP [dm3] 2L_6800308_SNP [dm6]	G	A	3.713e^-4	1	SYNONYMOUS_CODING CG17376 UTR_3_PRIME CG17376 DOWNSTREAM CR43610 & 1 other INTRON CG17376	regulatory region REDfly_CRMs
2R	12825803	2R_12825803_SNP [dm3] 2R_16938298_SNP [dm6]	A	C	3.714e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3L	14193720	3L_14193720_SNP [dm3] 3L_14200620_SNP [dm6]	C	T	3.733e^-4	1	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16331323	3R_16331323_SNP [dm3] 3R_20505601_SNP [dm6]	G	A	3.733e^-4	1	SYNONYMOUS_CODING Or92a
3R	17326692	3R_17326692_SNP [dm3] 3R_21500970_SNP [dm6]	G	T	3.733e^-4	1	INTRON C15
2R	12825729	2R_12825729_SNP [dm3] 2R_16938224_SNP [dm6]	G	A	3.738e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12825731	2R_12825731_SNP [dm3] 2R_16938226_SNP [dm6]	T	C	3.738e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3L	9669689	3L_9669689_SNP [dm3] 3L_9676589_SNP [dm6]	T	A	3.741e^-4	1	INTRON fry	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10916301	3L_10916301_SNP [dm3] 3L_10923201_SNP [dm6]	A	G	3.746e^-4	1	INTERGENIC
2R	12825679	2R_12825679_SNP [dm3] 2R_16938174_SNP [dm6]	G	A	3.762e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	15430575	2R_15430575_SNP [dm3] 2R_19543070_SNP [dm6]	A	G	3.765e^-4	1	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18602752	3R_18602752_SNP [dm3] 3R_22777030_SNP [dm6]	A	T	3.765e^-4	1	DOWNSTREAM Usp12-46 & 1 other INTRON CG7029
3L	9090314	3L_9090314_SNP [dm3] 3L_9097214_SNP [dm6]	T	A	3.765e^-4	1	SYNONYMOUS_CODING CG13315 DOWNSTREAM bol
3L	4384140	3L_4384140_SNP [dm3] 3L_4384140_SNP [dm6]	A	G	3.768e^-4	1	UPSTREAM slow INTERGENIC
2L	15102133	2L_15102133_SNP [dm3] 2L_15102133_SNP [dm6]	C	A	3.768e^-4	1	INTERGENIC
3R	5030354	3R_5030354_SNP [dm3] 3R_9204632_SNP [dm6]	G	A	3.770e^-4	1	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13672764	3L_13672764_SNP [dm3] 3L_13679664_SNP [dm6]	C	T	3.770e^-4	1	INTRON bru-3
3R	12480626	3R_12480626_SNP [dm3] 3R_16654904_SNP [dm6]	T	A	3.770e^-4	1	INTRON modSP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	11731582	2R_11731582_SNP [dm3] 2R_15844077_SNP [dm6]	A	G	3.774e^-4	1	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26256786	3R_26256786_SNP [dm3] 3R_30431064_SNP [dm6]	A	G	3.775e^-4	1	UPSTREAM CG15534 INTRON CG15533	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad
3R	10296965	3R_10296965_SNP [dm3] 3R_14471243_SNP [dm6]	C	A	3.777e^-4	1	INTRON cv-c
3L	17458355	3L_17458355_SNP [dm3] 3L_17465255_SNP [dm6]	T	C	3.779e^-4	1	UPSTREAM CG7603 INTERGENIC
2R	10143327	2R_10143327_SNP [dm3] 2R_14255822_SNP [dm6]	G	A	3.782e^-4	1	UPSTREAM CG8531 INTRON Hsc70-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	8568691	3R_8568691_SNP [dm3] 3R_12742969_SNP [dm6]	T	C	3.793e^-4	1	INTRON CG5999
2R	14855381	2R_14855381_INS [dm3] 2R_18967876_INS [dm6]	T	TA	3.799e^-4	1	INTERGENIC
2R	19387061	2R_19387061_SNP [dm3] 2R_23499538_SNP [dm6]	A	G	3.803e^-4	1	UPSTREAM CG13558 INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	14976659	X_14976659_SNP [dm3] X_15082626_SNP [dm6]	T	C	3.810e^-4	1	UPSTREAM CG33178 DOWNSTREAM CG33177 EXON CR44960
2L	7073184	2L_7073184_INS [dm3] 2L_7073184_INS [dm6]	A	AC	3.811e^-4	1	INTRON Pvf2
3L	8198108	3L_8198108_SNP [dm3] 3L_8205008_SNP [dm6]	G	A	3.838e^-4	1	INTERGENIC
2R	7379875	2R_7379875_SNP [dm3] 2R_11492370_SNP [dm6]	A	G	3.839e^-4	1	INTRON inv
3L	12844907	3L_12844907_SNP [dm3] 3L_12851807_SNP [dm6]	A	G	3.841e^-4	1	SPLICE_SITE_REGION Wbp2 SYNONYMOUS_CODING Wbp2 INTRON Wbp2
3R	26256760	3R_26256760_SNP [dm3] 3R_30431038_SNP [dm6]	T	A	3.847e^-4	1	INTRON CG15533	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad
3R	18991069	3R_18991069_SNP [dm3] 3R_23165347_SNP [dm6]	C	T	3.858e^-4	1	INTERGENIC
X	16137885	X_16137885_SNP [dm3] X_16243852_SNP [dm6]	A	G	3.858e^-4	1	INTERGENIC
3R	16328614	3R_16328614_SNP [dm3] 3R_20502892_SNP [dm6]	T	G	3.860e^-4	1	UPSTREAM Dic2 DOWNSTREAM MtnB INTERGENIC
2L	7041929	2L_7041929_SNP [dm3] 2L_7041929_SNP [dm6]	A	T	3.873e^-4	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9412283	2R_9412283_SNP [dm3] 2R_13524778_SNP [dm6]	G	A	3.881e^-4	1	UPSTREAM CG13332 INTRON Vmat
3R	3726942	3R_3726942_SNP [dm3] 3R_7901220_SNP [dm6]	A	C	3.884e^-4	1	DOWNSTREAM wtrw INTRON mRpS9
3R	3887125	3R_3887125_SNP [dm3] 3R_8061403_SNP [dm6]	T	G	3.896e^-4	1	INTRON mAChR-B	TF binding site mE1_TFBS_inv
2R	9151867	2R_9151867_SNP [dm3] 2R_13264362_SNP [dm6]	C	A	3.907e^-4	1	SPLICE_SITE_REGION CG42319 DOWNSTREAM CG42319 INTRON CG42319
2L	15863712	2L_15863712_SNP [dm3] 2L_15863712_SNP [dm6]	T	A	3.917e^-4	1	DOWNSTREAM CR42791 INTERGENIC
2L	13218182	2L_13218182_SNP [dm3] 2L_13218182_SNP [dm6]	G	A	3.932e^-4	1	SYNONYMOUS_CODING CG9426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1435328	2L_1435328_SNP [dm3] 2L_1435328_SNP [dm6]	G	A	3.935e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2L	20816761	2L_20816761_SNP [dm3] 2L_20816761_SNP [dm6]	C	A	3.937e^-4	1	UPSTREAM CG33322 INTRON CheB38b
2R	12825628	2R_12825628_SNP [dm3] 2R_16938123_SNP [dm6]	T	A	3.941e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3L	1632810	3L_1632810_SNP [dm3] 3L_1632810_SNP [dm6]	G	T	3.964e^-4	1	INTRON nSyb
3L	14637080	3L_14637080_SNP [dm3] 3L_14643980_SNP [dm6]	A	G	3.977e^-4	1	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	4474958	2L_4474958_SNP [dm3] 2L_4474958_SNP [dm6]	A	G	3.987e^-4	1	NON_SYNONYMOUS_CODING ine	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13992645	2L_13992645_SNP [dm3] 2L_13992645_SNP [dm6]	G	A	3.990e^-4	1	INTRON rk
2R	6130153	2R_6130153_SNP [dm3] 2R_10242648_SNP [dm6]	C	T	3.993e^-4	1	INTRON Hdc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21007009	2L_21007009_SNP [dm3] 2L_21007009_SNP [dm6]	T	C	3.997e^-4	1	INTRON CG42238
X	13216229	X_13216229_SNP [dm3] X_13322196_SNP [dm6]	A	C	4.015e^-4	1	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	517756	2L_517756_SNP [dm3] 2L_517756_SNP [dm6]	A	T	4.022e^-4	1	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	26179911	3R_26179911_SNP [dm3] 3R_30354189_SNP [dm6]	A	G	4.025e^-4	1	INTRON hdc
2L	5095540	2L_5095540_SNP [dm3] 2L_5095540_SNP [dm6]	G	A	4.027e^-4	1	UTR_3_PRIME CG5828 UPSTREAM CG4230 DOWNSTREAM CG5828	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	4179046	3L_4179046_SNP [dm3] 3L_4179046_SNP [dm6]	C	T	4.037e^-4	1	UTR_3_PRIME Teh2 UPSTREAM Teh4 DOWNSTREAM Teh2 INTRON CG18675
2R	9188899	2R_9188899_SNP [dm3] 2R_13301394_SNP [dm6]	C	T	4.065e^-4	1	SYNONYMOUS_CODING CG17047
3L	2809724	3L_2809724_INS [dm3] 3L_2809724_INS [dm6]	A	AAAGA	4.073e^-4	1	INTRON CG43444	TF binding site mE1_TFBS_cad
2L	5693687	2L_5693687_SNP [dm3] 2L_5693687_SNP [dm6]	T	G	4.086e^-4	1	INTERGENIC
X	13512558	X_13512558_SNP [dm3] X_13618525_SNP [dm6]	A	G	4.105e^-4	1	DOWNSTREAM CG2691 INTRON Tango2
2R	5140265	2R_5140265_SNP [dm3] 2R_9252760_SNP [dm6]	C	G	4.105e^-4	1	UTR_3_PRIME Pkn & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13461899	3L_13461899_SNP [dm3] 3L_13468799_SNP [dm6]	C	T	4.105e^-4	1	SYNONYMOUS_CODING CG10089
X	14622838	X_14622838_SNP [dm3] X_14728805_SNP [dm6]	T	A	4.113e^-4	1	INTRON NetB
2R	14619515	2R_14619515_SNP [dm3] 2R_18732010_SNP [dm6]	A	G	4.113e^-4	1	INTRON Hs3st-A
3R	19435876	3R_19435876_SNP [dm3] 3R_23610154_SNP [dm6]	C	G	4.120e^-4	1	INTRON CG31145
2R	13536089	2R_13536089_SNP [dm3] 2R_17648584_SNP [dm6]	T	G	4.123e^-4	1	INTRON CCHa1-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8370779	2L_8370779_SNP [dm3] 2L_8370779_SNP [dm6]	A	G	4.123e^-4	1	START_GAINED CG17292 UTR_5_PRIME CG17292 UPSTREAM CR45341 DOWNSTREAM Pp2A-29B INTRON CG17292
3L	5467946	3L_5467946_SNP [dm3] 3L_5474846_SNP [dm6]	T	G	4.127e^-4	1	INTERGENIC
3L	13187881	3L_13187881_SNP [dm3] 3L_13194781_SNP [dm6]	T	C	4.139e^-4	1	INTERGENIC
3R	26927037	3R_26927037_SNP [dm3] 3R_31101315_SNP [dm6]	T	G	4.142e^-4	1	UPSTREAM CG15553 INTERGENIC
X	12284890	X_12284890_SNP [dm3] X_12390857_SNP [dm6]	C	A	4.146e^-4	1	INTERGENIC
3R	25469128	3R_25469128_SNP [dm3] 3R_29643406_SNP [dm6]	G	T	4.157e^-4	1	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11551086	X_11551086_INS [dm3] X_11657053_INS [dm6]	C	CC	4.159e^-4	1	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8890223	2L_8890223_SNP [dm3] 2L_8890223_SNP [dm6]	G	A	4.169e^-4	1	INTERGENIC
3L	9349747	3L_9349747_SNP [dm3] 3L_9356647_SNP [dm6]	C	A	4.175e^-4	1	INTRON UGP
3L	8244015	3L_8244015_SNP [dm3] 3L_8250915_SNP [dm6]	C	T	4.181e^-4	1	INTRON Dscam4
3R	3771718	3R_3771718_SNP [dm3] 3R_7945996_SNP [dm6]	A	C	4.181e^-4	1	INTRON dsx
2L	10983637	2L_10983637_DEL [dm3] 2L_10983637_DEL [dm6]	GATTT	G	4.188e^-4	1	INTRON piwi
2R	9251822	2R_9251822_SNP [dm3] 2R_13364317_SNP [dm6]	C	T	4.195e^-4	1	INTERGENIC
2L	5257547	2L_5257547_SNP [dm3] 2L_5257547_SNP [dm6]	G	T	4.196e^-4	1	INTRON tkv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10635003	2L_10635003_SNP [dm3] 2L_10635003_SNP [dm6]	A	G	4.207e^-4	1	INTRON CG7329
2R	8982792	2R_8982792_SNP [dm3] 2R_13095287_SNP [dm6]	G	A	4.216e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	10983586	2L_10983586_SNP [dm3] 2L_10983586_SNP [dm6]	T	A	4.219e^-4	1	INTRON piwi
3R	475569	3R_475569_SNP [dm3] 3R_4649847_SNP [dm6]	C	T	4.222e^-4	1	DOWNSTREAM rpk INTRON Karybeta3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4186490	2L_4186490_SNP [dm3] 2L_4186490_SNP [dm6]	A	G	4.226e^-4	1	SYNONYMOUS_CODING CG31961 DOWNSTREAM CR44057	TF binding site BDTNP1_TFBS_dl
3R	13422372	3R_13422372_SNP [dm3] 3R_17596650_SNP [dm6]	T	C	4.240e^-4	1	NON_SYNONYMOUS_CODING CG7606 DOWNSTREAM Sgs5
2L	10643318	2L_10643318_SNP [dm3] 2L_10643318_SNP [dm6]	G	A	4.243e^-4	1	SYNONYMOUS_CODING CG31872 UPSTREAM CG18284
2L	10983588	2L_10983588_SNP [dm3] 2L_10983588_SNP [dm6]	G	A	4.246e^-4	1	INTRON piwi
2L	7075702	2L_7075702_SNP [dm3] 2L_7075702_SNP [dm6]	G	A	4.259e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3211454	X_3211454_SNP [dm3] X_3317421_SNP [dm6]	T	G	4.260e^-4	1	INTRON dnc & 1 other
3R	25139936	3R_25139936_INS [dm3] 3R_29314214_INS [dm6]	A	ATA	4.267e^-4	1	INTERGENIC
2R	20131798	2R_20131798_SNP [dm3] 2R_24244275_SNP [dm6]	G	C	4.271e^-4	1	INTRON nord
3R	25661059	3R_25661059_SNP [dm3] 3R_29835337_SNP [dm6]	C	T	4.277e^-4	1	UPSTREAM CG15510 & 1 other DOWNSTREAM CG42592 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16481237	3R_16481237_SNP [dm3] 3R_20655515_SNP [dm6]	A	G	4.281e^-4	1	SYNONYMOUS_CODING Nep4	TF binding site mE1_TFBS_chinmo
2R	6075768	2R_6075768_SNP [dm3] 2R_10188263_SNP [dm6]	C	A	4.283e^-4	1	INTRON KCNQ
3R	25476675	3R_25476675_SNP [dm3] 3R_29650953_SNP [dm6]	A	G	4.293e^-4	1	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
3R	3824656	3R_3824656_SNP [dm3] 3R_7998934_SNP [dm6]	T	A	4.295e^-4	1	UPSTREAM CG14463 INTERGENIC
3L	7519742	3L_7519742_SNP [dm3] 3L_7526642_SNP [dm6]	T	G	4.311e^-4	1	SYNONYMOUS_CODING ltl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27212985	3R_27212985_SNP [dm3] 3R_31387263_SNP [dm6]	G	T	4.311e^-4	1	SYNONYMOUS_CODING CG1607	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	26260795	3R_26260795_SNP [dm3] 3R_30435073_SNP [dm6]	A	G	4.321e^-4	1	UTR_3_PRIME CG15534 DOWNSTREAM CG15537
3R	12628931	3R_12628931_SNP [dm3] 3R_16803209_SNP [dm6]	C	A	4.327e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1404721	2L_1404721_SNP [dm3] 2L_1404721_SNP [dm6]	G	T	4.329e^-4	1	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2R	12825716	2R_12825716_SNP [dm3] 2R_16938211_SNP [dm6]	C	T	4.349e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
X	18221522	X_18221522_SNP [dm3] X_18327489_SNP [dm6]	C	A	4.352e^-4	1	NON_SYNONYMOUS_CODING CG6123	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	13754341	2L_13754341_SNP [dm3] 2L_13754341_SNP [dm6]	C	T	4.376e^-4	1	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
2L	16248058	2L_16248058_SNP [dm3] 2L_16248058_SNP [dm6]	G	A	4.382e^-4	1	INTRON PRL-1
X	16304936	X_16304936_SNP [dm3] X_16410903_SNP [dm6]	A	T	4.399e^-4	1	INTRON CG4301
3L	5476058	3L_5476058_SNP [dm3] 3L_5482958_SNP [dm6]	T	A	4.399e^-4	1	SYNONYMOUS_CODING CG4835	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14854518	2R_14854518_SNP [dm3] 2R_18967013_SNP [dm6]	G	A	4.403e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8061417	3L_8061417_SNP [dm3] 3L_8068317_SNP [dm6]	T	G	4.410e^-4	1	UPSTREAM tRNA:CR32363 DOWNSTREAM CG42590 INTRON Ect4
3R	14040956	3R_14040956_SNP [dm3] 3R_18215234_SNP [dm6]	C	T	4.411e^-4	1	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
2L	923649	2L_923649_DEL [dm3] 2L_923649_DEL [dm6]	TT	G	4.411e^-4	1	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14618803	2R_14618803_SNP [dm3] 2R_18731298_SNP [dm6]	A	G	4.412e^-4	1	INTRON Hs3st-A
2R	9412398	2R_9412398_SNP [dm3] 2R_13524893_SNP [dm6]	C	T	4.416e^-4	1	UPSTREAM CG13332 INTRON Vmat	TF binding site mE1_TFBS_cad
3R	3669101	3R_3669101_SNP [dm3] 3R_7843379_SNP [dm6]	T	C	4.416e^-4	1	INTRON CG34384
X	13676223	X_13676223_SNP [dm3] X_13782190_SNP [dm6]	G	A	4.424e^-4	1	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6126791	X_6126791_INS [dm3] X_6232758_INS [dm6]	T	TGCC	4.428e^-4	1	UTR_3_PRIME CG14446
2R	5307943	2R_5307943_SNP [dm3] 2R_9420438_SNP [dm6]	A	T	4.431e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	5695604	2L_5695604_SNP [dm3] 2L_5695604_SNP [dm6]	T	A	4.432e^-4	1	INTERGENIC
2R	10592408	2R_10592408_SNP [dm3] 2R_14704903_SNP [dm6]	G	A	4.439e^-4	1	INTRON mspo
3L	17458354	3L_17458354_SNP [dm3] 3L_17465254_SNP [dm6]	T	G	4.444e^-4	1	UPSTREAM CG7603 INTERGENIC
2R	12347547	2R_12347547_SNP [dm3] 2R_16460042_SNP [dm6]	C	T	4.445e^-4	1	INTERGENIC
3L	1663380	3L_1663380_SNP [dm3] 3L_1663380_SNP [dm6]	C	G	4.448e^-4	1	INTRON CG7971
2R	7192016	2R_7192016_SNP [dm3] 2R_11304511_SNP [dm6]	G	A	4.460e^-4	1	NON_SYNONYMOUS_CODING CG7741 DOWNSTREAM Fpps	TF binding site mE1_TFBS_sens
2L	7338811	2L_7338811_SNP [dm3] 2L_7338811_SNP [dm6]	A	T	4.462e^-4	1	INTRON Wnt6
2L	8252569	2L_8252569_SNP [dm3] 2L_8252569_SNP [dm6]	G	C	4.464e^-4	1	INTRON CG8086
3L	15214991	3L_15214991_SNP [dm3] 3L_15221891_SNP [dm6]	T	A	4.494e^-4	1	INTERGENIC
3R	25658304	3R_25658304_SNP [dm3] 3R_29832582_SNP [dm6]	C	T	4.504e^-4	1	INTRON Atg16
X	20945054	X_20945054_SNP [dm3] X_21074027_SNP [dm6]	C	G	4.509e^-4	1	INTRON bves
X	14670764	X_14670764_SNP [dm3] X_14776731_SNP [dm6]	A	T	4.516e^-4	1	UPSTREAM CG5347 DOWNSTREAM CG5334 INTERGENIC
2L	7500869	2L_7500869_SNP [dm3] 2L_7500869_SNP [dm6]	T	A	4.525e^-4	1	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12559266	2R_12559266_SNP [dm3] 2R_16671761_SNP [dm6]	G	A	4.527e^-4	1	UTR_3_PRIME CG34457 UPSTREAM CG34458
3R	9795071	3R_9795071_SNP [dm3] 3R_13969349_SNP [dm6]	C	G	4.541e^-4	1	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	14551809	2L_14551809_SNP [dm3] 2L_14551809_SNP [dm6]	T	G	4.541e^-4	1	UPSTREAM CR44853 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9327326	3R_9327326_SNP [dm3] 3R_13501604_SNP [dm6]	G	A	4.555e^-4	1	INTERGENIC
3L	8061391	3L_8061391_SNP [dm3] 3L_8068291_SNP [dm6]	C	T	4.560e^-4	1	UPSTREAM tRNA:CR32363 DOWNSTREAM CG42590 INTRON Ect4
2L	4434563	2L_4434563_SNP [dm3] 2L_4434563_SNP [dm6]	G	A	4.564e^-4	1	NON_SYNONYMOUS_CODING CG34178 UTR_3_PRIME CG34177 INTRON CG15431
3L	12970941	3L_12970941_SNP [dm3] 3L_12977841_SNP [dm6]	T	C	4.573e^-4	1	INTERGENIC
X	6405927	X_6405927_SNP [dm3] X_6511894_SNP [dm6]	C	G	4.592e^-4	1	INTRON CG42340
3L	10828665	3L_10828665_SNP [dm3] 3L_10835565_SNP [dm6]	A	G	4.595e^-4	1	INTERGENIC
2R	19339663	2R_19339663_SNP [dm3] 2R_23452140_SNP [dm6]	C	G	4.602e^-4	1	INTRON CG43795
3L	9669685	3L_9669685_DEL [dm3] 3L_9676585_DEL [dm6]	TT	T	4.621e^-4	1	INTRON fry	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12325243	X_12325243_SNP [dm3] X_12431210_SNP [dm6]	T	G	4.623e^-4	1	INTERGENIC
2L	1435329	2L_1435329_SNP [dm3] 2L_1435329_SNP [dm6]	G	A	4.627e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
X	11566147	X_11566147_SNP [dm3] X_11672114_SNP [dm6]	C	T	4.627e^-4	1	INTRON Ptp10D
2L	7717706	2L_7717706_SNP [dm3] 2L_7717706_SNP [dm6]	G	A	4.632e^-4	1	NON_SYNONYMOUS_CODING CG13793
3L	9179991	3L_9179991_SNP [dm3] 3L_9186891_SNP [dm6]	T	C	4.635e^-4	1	INTERGENIC
X	7354741	X_7354741_SNP [dm3] X_7460708_SNP [dm6]	A	T	4.641e^-4	1	EXON CR44500
3L	5476134	3L_5476134_SNP [dm3] 3L_5483034_SNP [dm6]	T	C	4.642e^-4	1	NON_SYNONYMOUS_CODING CG4835	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3217460	2L_3217460_SNP [dm3] 2L_3217460_SNP [dm6]	G	C	4.657e^-4	1	INTERGENIC
2L	8896855	2L_8896855_SNP [dm3] 2L_8896855_SNP [dm6]	C	T	4.657e^-4	1	INTERGENIC
2L	8900203	2L_8900203_SNP [dm3] 2L_8900203_SNP [dm6]	T	A	4.660e^-4	1	INTRON CG34398
3R	8557943	3R_8557943_SNP [dm3] 3R_12732221_SNP [dm6]	G	A	4.661e^-4	1	INTERGENIC
2R	20386430	2R_20386430_INS [dm3] 2R_24498907_INS [dm6]	T	TT	4.679e^-4	1	DOWNSTREAM Ssl & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9326650	3R_9326650_SNP [dm3] 3R_13500928_SNP [dm6]	T	A	4.689e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13160485	2R_13160485_SNP [dm3] 2R_17272980_SNP [dm6]	T	C	4.701e^-4	1	INTRON mbl
3R	3855909	3R_3855909_SNP [dm3] 3R_8030187_SNP [dm6]	C	A	4.706e^-4	1	UPSTREAM CG10903 & 1 other INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	15100856	2R_15100856_SNP [dm3] 2R_19213351_SNP [dm6]	A	G	4.709e^-4	1	INTRON hppy
2R	15100998	2R_15100998_SNP [dm3] 2R_19213493_SNP [dm6]	C	T	4.709e^-4	1	INTRON hppy
2R	21101880	2R_21101880_SNP [dm3] 2R_25214357_SNP [dm6]	C	A	4.734e^-4	1	INTRON CG9380	regulatory region FlyBase TF binding site BDTNP1_TFBS_z mE1_TFBS_kn mE1_TFBS_Kr
3R	14505696	3R_14505696_SNP [dm3] 3R_18679974_SNP [dm6]	G	A	4.736e^-4	1	NON_SYNONYMOUS_CODING CG7706 UPSTREAM CG7708
2R	10679272	2R_10679272_SNP [dm3] 2R_14791767_SNP [dm6]	C	T	4.737e^-4	1	INTRON kn	TF binding site BDTNP1_TFBS_dl
X	13210651	X_13210651_SNP [dm3] X_13316618_SNP [dm6]	G	C	4.738e^-4	1	INTRON IP3K2
3L	17536809	3L_17536809_SNP [dm3] 3L_17543709_SNP [dm6]	A	C	4.739e^-4	1	INTRON Nedd4
3L	10713604	3L_10713604_SNP [dm3] 3L_10720504_SNP [dm6]	T	C	4.747e^-4	1	INTERGENIC
2R	13507332	2R_13507332_DEL [dm3] 2R_17619827_DEL [dm6]	CCT	C	4.764e^-4	1	INTRON CG10936
X	10136199	X_10136199_SNP [dm3] X_10242166_SNP [dm6]	T	C	4.769e^-4	1	INTRON Hk
2L	3330273	2L_3330273_SNP [dm3] 2L_3330273_SNP [dm6]	T	C	4.792e^-4	1	UPSTREAM CG3285 DOWNSTREAM CG33282 INTERGENIC
2L	963364	2L_963364_SNP [dm3] 2L_963364_SNP [dm6]	A	T	4.801e^-4	1	INTERGENIC
3R	19268150	3R_19268150_SNP [dm3] 3R_23442428_SNP [dm6]	A	C	4.803e^-4	1	INTRON CG4374
2L	925759	2L_925759_SNP [dm3] 2L_925759_SNP [dm6]	C	T	4.814e^-4	1	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15215052	3L_15215052_SNP [dm3] 3L_15221952_SNP [dm6]	G	A	4.836e^-4	1	INTERGENIC
3R	20215264	3R_20215264_SNP [dm3] 3R_24389542_SNP [dm6]	A	T	4.838e^-4	1	INTRON CG5768
2L	8235177	2L_8235177_SNP [dm3] 2L_8235177_SNP [dm6]	A	G	4.854e^-4	1	INTRON Pvr
3R	8754864	3R_8754864_DEL [dm3] 3R_12929142_DEL [dm6]	TA	T	4.855e^-4	1	INTRON beat-Vb
X	8423895	X_8423895_SNP [dm3] X_8529862_SNP [dm6]	A	C	4.859e^-4	1	UPSTREAM PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_dl
2R	14619553	2R_14619553_DEL [dm3] 2R_18732048_DEL [dm6]	CAGGC	C	4.864e^-4	1	INTRON Hs3st-A
3R	8701835	3R_8701835_SNP [dm3] 3R_12876113_SNP [dm6]	C	G	4.880e^-4	1	INTERGENIC
2R	14775725	2R_14775725_SNP [dm3] 2R_18888220_SNP [dm6]	T	C	4.883e^-4	1	INTRON sano
2L	4015141	2L_4015141_SNP [dm3] 2L_4015141_SNP [dm6]	G	A	4.883e^-4	1	INTERGENIC
2L	7441711	2L_7441711_SNP [dm3] 2L_7441711_SNP [dm6]	T	A	4.918e^-4	1	UTR_5_PRIME CG5973 INTRON CG5973
3L	5468160	3L_5468160_SNP [dm3] 3L_5475060_SNP [dm6]	G	A	4.918e^-4	1	INTERGENIC
3R	10227587	3R_10227587_SNP [dm3] 3R_14401865_SNP [dm6]	T	A	4.925e^-4	1	INTRON cv-c
X	11578971	X_11578971_SNP [dm3] X_11684938_SNP [dm6]	A	T	4.931e^-4	1	INTRON bif
3R	3878980	3R_3878980_SNP [dm3] 3R_8053258_SNP [dm6]	T	C	4.933e^-4	1	INTRON CG43060	TF binding site mE1_TFBS_inv
3R	26321364	3R_26321364_SNP [dm3] 3R_30495642_SNP [dm6]	G	T	4.940e^-4	1	INTRON PH4alphaMP	TF binding site mE1_TFBS_inv
3L	394241	3L_394241_SNP [dm3] 3L_394241_SNP [dm6]	C	G	4.942e^-4	1	UPSTREAM CR45378 EXON CR43969
2R	3394210	2R_3394210_SNP [dm3] 2R_7506705_SNP [dm6]	A	G	4.948e^-4	1	NON_SYNONYMOUS_CODING didum UTR_3_PRIME didum	TF binding site mE1_TFBS_cad
3R	3889403	3R_3889403_SNP [dm3] 3R_8063681_SNP [dm6]	A	G	4.953e^-4	1	INTRON mAChR-B
2R	12562635	2R_12562635_SNP [dm3] 2R_16675130_SNP [dm6]	T	C	4.955e^-4	1	INTRON CG30463
3L	10619846	3L_10619846_SNP [dm3] 3L_10626746_SNP [dm6]	C	T	4.963e^-4	1	SPLICE_SITE_REGION CG34238 SYNONYMOUS_CODING CG34238 DOWNSTREAM CG14151
X	12325244	X_12325244_SNP [dm3] X_12431211_SNP [dm6]	C	T	4.964e^-4	1	INTERGENIC
2R	4217529	2R_4217529_SNP [dm3] 2R_8330024_SNP [dm6]	G	A	4.965e^-4	1	INTRON pdm3
2R	9409388	2R_9409388_SNP [dm3] 2R_13521883_SNP [dm6]	C	T	4.985e^-4	1	START_GAINED CG13331 UTR_5_PRIME CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad
2L	3274383	2L_3274383_SNP [dm3] 2L_3274383_SNP [dm6]	A	G	4.993e^-4	1	INTERGENIC
2R	9394919	2R_9394919_SNP [dm3] 2R_13507414_SNP [dm6]	A	T	5.000e^-4	1	UPSTREAM EfTuM INTRON mip120	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10805708	3L_10805708_SNP [dm3] 3L_10812608_SNP [dm6]	T	A	5.002e^-4	1	INTERGENIC
2L	13665284	2L_13665284_SNP [dm3] 2L_13665284_SNP [dm6]	C	T	5.002e^-4	1	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	2857981	X_2857981_SNP [dm3] X_2963948_SNP [dm6]	T	A	5.008e^-4	1	INTRON kirre & 1 other
2L	13190258	2L_13190258_SNP [dm3] 2L_13190258_SNP [dm6]	C	T	5.011e^-4	1	INTRON CG16974
X	4070736	X_4070736_SNP [dm3] X_4176703_SNP [dm6]	G	C	5.023e^-4	1	INTRON Fas2
3R	15970226	3R_15970226_SNP [dm3] 3R_20144504_SNP [dm6]	T	A	5.023e^-4	1	INTERGENIC
2R	14775724	2R_14775724_SNP [dm3] 2R_18888219_SNP [dm6]	A	G	5.030e^-4	1	INTRON sano
3L	15934085	3L_15934085_SNP [dm3] 3L_15940985_SNP [dm6]	C	T	5.031e^-4	1	INTRON Pka-C3
X	8228080	X_8228080_SNP [dm3] X_8334047_SNP [dm6]	T	C	5.043e^-4	1	INTRON nAChRalpha3	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	10619790	3L_10619790_SNP [dm3] 3L_10626690_SNP [dm6]	C	T	5.051e^-4	1	DOWNSTREAM CG14151 INTRON CG34238
X	9604482	X_9604482_SNP [dm3] X_9710449_SNP [dm6]	G	A	5.058e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3793673	3R_3793673_SNP [dm3] 3R_7967951_SNP [dm6]	G	A	5.074e^-4	1	UPSTREAM dsx INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10373469	3L_10373469_SNP [dm3] 3L_10380369_SNP [dm6]	T	C	5.087e^-4	1	INTERGENIC
2L	13114560	2L_13114560_SNP [dm3] 2L_13114560_SNP [dm6]	C	A	5.094e^-4	1	INTERGENIC
2L	8376954	2L_8376954_SNP [dm3] 2L_8376954_SNP [dm6]	C	T	5.109e^-4	1	UPSTREAM CG17294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8567751	3R_8567751_SNP [dm3] 3R_12742029_SNP [dm6]	T	C	5.117e^-4	1	SYNONYMOUS_STOP CG5999 DOWNSTREAM CG5724
3L	11331870	3L_11331870_SNP [dm3] 3L_11338770_SNP [dm6]	T	G	5.129e^-4	1	INTERGENIC
2L	8586376	2L_8586376_SNP [dm3] 2L_8586376_SNP [dm6]	G	A	5.130e^-4	1	INTRON Sema-1a
2L	9321662	2L_9321662_SNP [dm3] 2L_9321662_SNP [dm6]	T	C	5.133e^-4	1	INTERGENIC
X	18914429	X_18914429_SNP [dm3] X_19020396_SNP [dm6]	G	A	5.139e^-4	1	INTRON CG43759
X	9907193	X_9907193_SNP [dm3] X_10013160_SNP [dm6]	A	C	5.149e^-4	1	NON_SYNONYMOUS_CODING CG2990
3L	5591576	3L_5591576_SNP [dm3] 3L_5598476_SNP [dm6]	A	C	5.153e^-4	1	DOWNSTREAM CG10591 INTERGENIC
3L	11512654	3L_11512654_SNP [dm3] 3L_11519554_SNP [dm6]	A	C	5.157e^-4	1	SPLICE_SITE_REGION Fuca DOWNSTREAM CG7512 INTRON Fuca
2L	800763	2L_800763_SNP [dm3] 2L_800763_SNP [dm6]	C	T	5.158e^-4	1	DOWNSTREAM CR45259 INTERGENIC
2R	20200330	2R_20200330_SNP [dm3] 2R_24312807_SNP [dm6]	T	C	5.158e^-4	1	UTR_3_PRIME betaTub60D	TF binding site mE1_TFBS_bab1
3L	17591663	3L_17591663_SNP [dm3] 3L_17598563_SNP [dm6]	G	A	5.164e^-4	1	INTRON Eip74EF
3R	26775580	3R_26775580_SNP [dm3] 3R_30949858_SNP [dm6]	A	T	5.190e^-4	1	INTERGENIC
2R	7192060	2R_7192060_SNP [dm3] 2R_11304555_SNP [dm6]	T	C	5.193e^-4	1	DOWNSTREAM Fpps INTRON CG7741	TF binding site mE1_TFBS_sens
2R	9188297	2R_9188297_SNP [dm3] 2R_13300792_SNP [dm6]	G	A	5.196e^-4	1	NON_SYNONYMOUS_CODING CG17047
2R	5309487	2R_5309487_SNP [dm3] 2R_9421982_SNP [dm6]	G	A	5.223e^-4	1	UTR_3_PRIME CG13955	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14761382	2R_14761382_DEL [dm3] 2R_18873877_DEL [dm6]	CC	C	5.241e^-4	1	INTERGENIC
3L	18605856	3L_18605856_SNP [dm3] 3L_18612756_SNP [dm6]	G	A	5.244e^-4	1	SYNONYMOUS_CODING CG32199 DOWNSTREAM CG32201 INTRON CG4174 & 1 other
3R	26777157	3R_26777157_SNP [dm3] 3R_30951435_SNP [dm6]	G	T	5.259e^-4	1	INTERGENIC
X	16704281	X_16704281_SNP [dm3] X_16810248_SNP [dm6]	T	A	5.271e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9981853	3L_9981853_SNP [dm3] 3L_9988753_SNP [dm6]	T	C	5.273e^-4	1	INTRON dpr6
2R	17926699	2R_17926699_SNP [dm3] 2R_22039194_SNP [dm6]	G	A	5.285e^-4	1	INTRON CG34370
2R	7602573	2R_7602573_SNP [dm3] 2R_11715068_SNP [dm6]	G	A	5.287e^-4	1	INTRON pyr
3L	4384010	3L_4384010_SNP [dm3] 3L_4384010_SNP [dm6]	C	T	5.290e^-4	1	UPSTREAM slow INTERGENIC
3R	3395062	3R_3395062_SNP [dm3] 3R_7569340_SNP [dm6]	G	A	5.303e^-4	1	DOWNSTREAM CG34127 INTERGENIC
3L	6396124	3L_6396124_SNP [dm3] 3L_6403024_SNP [dm6]	A	G	5.306e^-4	1	INTRON CG42747
2L	1531436	2L_1531436_DEL [dm3] 2L_1531436_DEL [dm6]	CCAGCGGCAGC...	C	5.356e^-4	1	INTERGENIC
X	12284935	X_12284935_SNP [dm3] X_12390902_SNP [dm6]	C	T	5.378e^-4	1	INTERGENIC
2L	2265103	2L_2265103_SNP [dm3] 2L_2265103_SNP [dm6]	A	G	5.385e^-4	1	NON_SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
2R	4510562	2R_4510562_SNP [dm3] 2R_8623057_SNP [dm6]	A	G	5.387e^-4	1	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5309237	2R_5309237_DEL [dm3] 2R_9421732_DEL [dm6]	TAGTTCCA	T	5.392e^-4	1	DOWNSTREAM CG13955 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12663042	3L_12663042_SNP [dm3] 3L_12669942_SNP [dm6]	A	C	5.415e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13507325	2R_13507325_SNP [dm3] 2R_17619820_SNP [dm6]	C	T	5.424e^-4	1	INTRON CG10936
2R	13507373	2R_13507373_SNP [dm3] 2R_17619868_SNP [dm6]	A	G	5.424e^-4	1	INTRON CG10936
2R	13507375	2R_13507375_INS [dm3] 2R_17619870_INS [dm6]	T	TGTAAGAA	5.424e^-4	1	INTRON CG10936
2R	13507379	2R_13507379_INS [dm3] 2R_17619874_INS [dm6]	A	AGTTT	5.424e^-4	1	INTRON CG10936
3L	2770591	3L_2770591_SNP [dm3] 3L_2770591_SNP [dm6]	C	A	5.429e^-4	1	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4919708	2R_4919708_SNP [dm3] 2R_9032203_SNP [dm6]	G	A	5.451e^-4	1	INTERGENIC
3R	3774690	3R_3774690_SNP [dm3] 3R_7948968_SNP [dm6]	C	T	5.451e^-4	1	INTRON dsx
X	7373067	X_7373067_DEL [dm3] X_7479034_DEL [dm6]	GC	G	5.458e^-4	1	INTERGENIC
3R	8568880	3R_8568880_SNP [dm3] 3R_12743158_SNP [dm6]	A	T	5.467e^-4	1	NON_SYNONYMOUS_CODING CG5999
X	17171822	X_17171822_SNP [dm3] X_17277789_SNP [dm6]	G	C	5.471e^-4	1	NON_SYNONYMOUS_CODING f UPSTREAM f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	20861599	3L_20861599_SNP [dm3] 3L_20868499_SNP [dm6]	C	T	5.483e^-4	1	INTRON CG32432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18217919	X_18217919_SNP [dm3] X_18323886_SNP [dm6]	T	G	5.494e^-4	1	UTR_3_PRIME CG6123 DOWNSTREAM CG6123
X	7376874	X_7376874_SNP [dm3] X_7482841_SNP [dm6]	A	T	5.502e^-4	1	INTERGENIC
2L	6800474	2L_6800474_SNP [dm3] 2L_6800474_SNP [dm6]	C	T	5.509e^-4	1	NON_SYNONYMOUS_CODING CG17376 DOWNSTREAM CR43610 & 2 others INTRON CG17376	regulatory region REDfly_CRMs
3R	26260799	3R_26260799_SNP [dm3] 3R_30435077_SNP [dm6]	T	C	5.523e^-4	1	UTR_3_PRIME CG15534 DOWNSTREAM CG15537
3L	7030104	3L_7030104_SNP [dm3] 3L_7037004_SNP [dm6]	A	C	5.534e^-4	1	INTRON Mp
X	9179925	X_9179925_SNP [dm3] X_9285892_SNP [dm6]	A	C	5.540e^-4	1	UTR_5_PRIME lz
3L	6109968	3L_6109968_SNP [dm3] 3L_6116868_SNP [dm6]	C	T	5.543e^-4	1	INTRON Ets65A
3R	3834412	3R_3834412_SNP [dm3] 3R_8008690_SNP [dm6]	A	G	5.569e^-4	1	UPSTREAM CG2767 & 1 other INTRON CG11052	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	3261339	2L_3261339_SNP [dm3] 2L_3261339_SNP [dm6]	T	C	5.575e^-4	1	UPSTREAM CR45337 DOWNSTREAM CR45338 INTERGENIC
X	16300278	X_16300278_SNP [dm3] X_16406245_SNP [dm6]	C	A	5.581e^-4	1	UPSTREAM CG4301 INTRON CG4301
3L	5476076	3L_5476076_SNP [dm3] 3L_5482976_SNP [dm6]	T	A	5.585e^-4	1	SYNONYMOUS_CODING CG4835	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9412382	2R_9412382_SNP [dm3] 2R_13524877_SNP [dm6]	A	T	5.596e^-4	1	UPSTREAM CG13332 INTRON Vmat	TF binding site mE1_TFBS_cad
2R	18023575	2R_18023575_SNP [dm3] 2R_22136070_SNP [dm6]	G	A	5.605e^-4	1	UPSTREAM a INTERGENIC
2R	18432696	2R_18432696_SNP [dm3] 2R_22545191_SNP [dm6]	G	T	5.609e^-4	1	INTRON px
3R	13368067	3R_13368067_SNP [dm3] 3R_17542345_SNP [dm6]	A	G	5.617e^-4	1	INTRON SF1
3R	9172407	3R_9172407_SNP [dm3] 3R_13346685_SNP [dm6]	T	C	5.629e^-4	1	INTERGENIC
3R	26062388	3R_26062388_SNP [dm3] 3R_30236666_SNP [dm6]	A	G	5.632e^-4	1	DOWNSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10917057	3L_10917057_DEL [dm3] 3L_10923957_DEL [dm6]	TT	T	5.632e^-4	1	INTERGENIC
2R	18630975	2R_18630975_SNP [dm3] 2R_22743470_SNP [dm6]	G	T	5.638e^-4	1	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5467984	3L_5467984_SNP [dm3] 3L_5474884_SNP [dm6]	G	A	5.646e^-4	1	INTERGENIC
X	18915078	X_18915078_SNP [dm3] X_19021045_SNP [dm6]	G	A	5.647e^-4	1	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9191571	3L_9191571_SNP [dm3] 3L_9198471_SNP [dm6]	G	A	5.650e^-4	1	INTERGENIC
3L	11511944	3L_11511944_SNP [dm3] 3L_11518844_SNP [dm6]	G	T	5.663e^-4	1	UTR_3_PRIME CG7512 & 1 other
2L	7278627	2L_7278627_SNP [dm3] 2L_7278627_SNP [dm6]	A	G	5.671e^-4	1	INTERGENIC
2R	3266400	2R_3266400_SNP [dm3] 2R_7378895_SNP [dm6]	G	T	5.676e^-4	1	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2577943	2R_2577943_SNP [dm3] 2R_6690438_SNP [dm6]	A	G	5.686e^-4	1	UPSTREAM Tdc2 INTRON CG9422
2L	6222220	2L_6222220_SNP [dm3] 2L_6222220_SNP [dm6]	T	C	5.694e^-4	1	INTERGENIC
2R	6684488	2R_6684488_SNP [dm3] 2R_10796983_SNP [dm6]	G	A	5.703e^-4	1	INTRON CG33144
2L	10355738	2L_10355738_SNP [dm3] 2L_10355738_SNP [dm6]	C	T	5.704e^-4	1	NON_SYNONYMOUS_CODING CG5367
3L	2313500	3L_2313500_SNP [dm3] 3L_2313500_SNP [dm6]	G	C	5.711e^-4	1	INTERGENIC
X	14788892	X_14788892_SNP [dm3] X_14894859_SNP [dm6]	A	G	5.717e^-4	1	INTRON Flo2 & 1 other
3L	2795771	3L_2795771_SNP [dm3] 3L_2795771_SNP [dm6]	C	T	5.729e^-4	1	INTRON CG43444
2L	3261336	2L_3261336_SNP [dm3] 2L_3261336_SNP [dm6]	T	C	5.741e^-4	1	UPSTREAM CR45337 DOWNSTREAM CR45338 INTERGENIC
3R	25666221	3R_25666221_SNP [dm3] 3R_29840499_SNP [dm6]	A	T	5.742e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4919709	2R_4919709_SNP [dm3] 2R_9032204_SNP [dm6]	C	G	5.749e^-4	1	INTERGENIC
3R	26492066	3R_26492066_DEL [dm3] 3R_30666344_DEL [dm6]	TTT	T	5.750e^-4	1	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad
3R	4991494	3R_4991494_INS [dm3] 3R_9165772_INS [dm6]	A	ACAAACGTTACAA...	5.751e^-4	1	INTRON pum
2L	8542815	2L_8542815_SNP [dm3] 2L_8542815_SNP [dm6]	G	A	5.756e^-4	1	UPSTREAM Sema-1a DOWNSTREAM tRNA:CR31603 INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	20216236	3R_20216236_SNP [dm3] 3R_24390514_SNP [dm6]	T	G	5.778e^-4	1	UPSTREAM CG13615 & 1 other INTERGENIC
X	10334487	X_10334487_SNP [dm3] X_10440454_SNP [dm6]	A	T	5.789e^-4	1	INTRON CG32683
X	15026959	X_15026959_SNP [dm3] X_15132926_SNP [dm6]	T	A	5.790e^-4	1	INTRON drd
3R	10975070	3R_10975070_SNP [dm3] 3R_15149348_SNP [dm6]	G	A	5.793e^-4	1	INTERGENIC
2L	5628912	2L_5628912_SNP [dm3] 2L_5628912_SNP [dm6]	G	A	5.794e^-4	1	INTRON CG31646	TF binding site BDTNP1_TFBS_twi
X	2595136	X_2595136_SNP [dm3] X_2701103_SNP [dm6]	A	T	5.796e^-4	1	DOWNSTREAM Csat & 1 other INTERGENIC
3L	3304944	3L_3304944_SNP [dm3] 3L_3304944_SNP [dm6]	G	A	5.824e^-4	1	INTRON ZnT63C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	1921061	2R_1921061_SNP [dm3] 2R_6033556_SNP [dm6]	T	G	5.825e^-4	1	INTRON SCAP	TF binding site BDTNP1_TFBS_dl
2R	6130259	2R_6130259_SNP [dm3] 2R_10242754_SNP [dm6]	A	G	5.832e^-4	1	SYNONYMOUS_CODING Hdc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10916325	3L_10916325_SNP [dm3] 3L_10923225_SNP [dm6]	A	G	5.836e^-4	1	INTERGENIC
3R	22685531	3R_22685531_SNP [dm3] 3R_26859809_SNP [dm6]	A	C	5.840e^-4	1	INTRON Lerp
3R	25598024	3R_25598024_SNP [dm3] 3R_29772302_SNP [dm6]	A	T	5.858e^-4	1	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	5572819	X_5572819_SNP [dm3] X_5678786_SNP [dm6]	G	A	5.872e^-4	1	INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3R	15970344	3R_15970344_SNP [dm3] 3R_20144622_SNP [dm6]	G	T	5.879e^-4	1	INTERGENIC
X	3456677	X_3456677_SNP [dm3] X_3562644_SNP [dm6]	C	T	5.881e^-4	1	INTRON CG32791 & 1 other
3R	10232206	3R_10232206_SNP [dm3] 3R_14406484_SNP [dm6]	G	A	5.883e^-4	1	INTRON cv-c
2R	7107370	2R_7107370_SNP [dm3] 2R_11219865_SNP [dm6]	G	A	5.887e^-4	1	UPSTREAM Syx6 & 1 other INTRON Syx6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9981441	3L_9981441_SNP [dm3] 3L_9988341_SNP [dm6]	C	T	5.899e^-4	1	INTRON dpr6
2R	16793850	2R_16793850_SNP [dm3] 2R_20906345_SNP [dm6]	T	C	5.900e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	16085006	3R_16085006_SNP [dm3] 3R_20259284_SNP [dm6]	C	T	5.902e^-4	1	INTRON cic
2L	4896693	2L_4896693_SNP [dm3] 2L_4896693_SNP [dm6]	C	T	5.903e^-4	1	INTRON CG3036
2R	7647170	2R_7647170_SNP [dm3] 2R_11759665_SNP [dm6]	G	A	5.914e^-4	1	INTRON ths
3R	22864245	3R_22864245_SNP [dm3] 3R_27038523_SNP [dm6]	G	T	5.916e^-4	1	INTRON RYa-R
2L	13218559	2L_13218559_SNP [dm3] 2L_13218559_SNP [dm6]	A	G	5.922e^-4	1	INTRON CG9426	TF binding site BDTNP1_TFBS_dl
X	7373660	X_7373660_DEL [dm3] X_7479627_DEL [dm6]	CTTAAC	C	5.925e^-4	1	INTERGENIC
3L	9743592	3L_9743592_SNP [dm3] 3L_9750492_SNP [dm6]	G	A	5.946e^-4	1	INTRON CG42268
2R	10161625	2R_10161625_SNP [dm3] 2R_14274120_SNP [dm6]	G	T	5.950e^-4	1	SYNONYMOUS_CODING conv
3R	3818412	3R_3818412_SNP [dm3] 3R_7992690_SNP [dm6]	G	A	5.951e^-4	1	INTRON CG2781
2L	8128143	2L_8128143_SNP [dm3] 2L_8128143_SNP [dm6]	C	G	5.955e^-4	1	INTRON CG8668	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	3519025	2R_3519025_SNP [dm3] 2R_7631520_SNP [dm6]	A	C	5.957e^-4	1	INTRON CG43340 EXON CR45131
3L	12618428	3L_12618428_SNP [dm3] 3L_12625328_SNP [dm6]	A	G	5.974e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1938939	3L_1938939_SNP [dm3] 3L_1938939_SNP [dm6]	T	A	5.978e^-4	1	UTR_5_PRIME CG5687 UPSTREAM CG5687 DOWNSTREAM CR44536
2L	1529164	2L_1529164_SNP [dm3] 2L_1529164_SNP [dm6]	T	A	5.978e^-4	1	INTERGENIC
2R	3310283	2R_3310283_SNP [dm3] 2R_7422778_SNP [dm6]	G	C	5.993e^-4	1	INTRON so EXON CR44202	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	14551766	2L_14551766_SNP [dm3] 2L_14551766_SNP [dm6]	C	A	5.997e^-4	1	UPSTREAM CR44853 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13665220	2L_13665220_SNP [dm3] 2L_13665220_SNP [dm6]	G	A	6.002e^-4	1	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9189595	2R_9189595_SNP [dm3] 2R_13302090_SNP [dm6]	A	C	6.005e^-4	1	DOWNSTREAM CG17047 INTERGENIC
2R	9189596	2R_9189596_SNP [dm3] 2R_13302091_SNP [dm6]	G	A	6.005e^-4	1	DOWNSTREAM CG17047 INTERGENIC
2R	9188422	2R_9188422_SNP [dm3] 2R_13300917_SNP [dm6]	T	A	6.008e^-4	1	INTRON CG17047
3R	25287934	3R_25287934_SNP [dm3] 3R_29462212_SNP [dm6]	T	C	6.023e^-4	1	SYNONYMOUS_CODING Ptp99A INTRON Ptp99A	TF binding site mE1_TFBS_chinmo
X	8508982	X_8508982_SNP [dm3] X_8614949_SNP [dm6]	C	T	6.033e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13665279	2L_13665279_SNP [dm3] 2L_13665279_SNP [dm6]	G	T	6.034e^-4	1	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	9321327	3R_9321327_SNP [dm3] 3R_13495605_SNP [dm6]	C	A	6.035e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10820790	3L_10820790_SNP [dm3] 3L_10827690_SNP [dm6]	T	C	6.042e^-4	1	INTERGENIC
2L	7075699	2L_7075699_SNP [dm3] 2L_7075699_SNP [dm6]	T	C	6.059e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17282839	3L_17282839_SNP [dm3] 3L_17289739_SNP [dm6]	C	A	6.064e^-4	1	INTERGENIC
2R	20980212	2R_20980212_SNP [dm3] 2R_25092689_SNP [dm6]	T	G	6.064e^-4	1	INTRON lov
X	6964430	X_6964430_SNP [dm3] X_7070397_SNP [dm6]	C	A	6.064e^-4	1	INTRON CG4607
X	16089085	X_16089085_SNP [dm3] X_16195052_SNP [dm6]	C	G	6.067e^-4	1	INTERGENIC
X	17002926	X_17002926_SNP [dm3] X_17108893_SNP [dm6]	G	T	6.071e^-4	1	INTRON CG5004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4962615	2L_4962615_SNP [dm3] 2L_4962615_SNP [dm6]	A	T	6.086e^-4	1	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15970224	3R_15970224_SNP [dm3] 3R_20144502_SNP [dm6]	G	A	6.093e^-4	1	INTERGENIC
X	18221012	X_18221012_SNP [dm3] X_18326979_SNP [dm6]	G	T	6.095e^-4	1	INTRON CG6123
2R	9188450	2R_9188450_SNP [dm3] 2R_13300945_SNP [dm6]	C	A	6.098e^-4	1	INTRON CG17047
3R	10227637	3R_10227637_SNP [dm3] 3R_14401915_SNP [dm6]	A	T	6.110e^-4	1	INTRON cv-c
3L	17399415	3L_17399415_SNP [dm3] 3L_17406315_SNP [dm6]	T	G	6.113e^-4	1	INTRON blot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1290728	2L_1290728_DEL [dm3] 2L_1290728_DEL [dm6]	TTTAT	T	6.116e^-4	1	INTRON robo3
3L	17484374	3L_17484374_SNP [dm3] 3L_17491274_SNP [dm6]	A	G	6.119e^-4	1	INTRON Oatp74D	TF binding site mE1_TFBS_Trl
2L	5595878	2L_5595878_SNP [dm3] 2L_5595878_SNP [dm6]	G	A	6.136e^-4	1	UPSTREAM CG18266 INTERGENIC
3L	1669752	3L_1669752_SNP [dm3] 3L_1669752_SNP [dm6]	C	T	6.139e^-4	1	SYNONYMOUS_CODING RabX5 DOWNSTREAM CG13930	TF binding site mE1_TFBS_chinmo
X	13512560	X_13512560_SNP [dm3] X_13618527_SNP [dm6]	T	A	6.145e^-4	1	DOWNSTREAM CG2691 INTRON Tango2
2R	3519541	2R_3519541_SNP [dm3] 2R_7632036_SNP [dm6]	C	T	6.160e^-4	1	UPSTREAM CG43341 INTRON CG43340 EXON CR45131	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
3L	9546163	3L_9546163_SNP [dm3] 3L_9553063_SNP [dm6]	T	A	6.168e^-4	1	UTR_5_PRIME CG42673
2R	15005393	2R_15005393_SNP [dm3] 2R_19117888_SNP [dm6]	C	T	6.174e^-4	1	INTRON 5-HT1A
2L	6236374	2L_6236374_SNP [dm3] 2L_6236374_SNP [dm6]	C	A	6.178e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5168510	2L_5168510_SNP [dm3] 2L_5168510_SNP [dm6]	C	T	6.178e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	553723	2L_553723_SNP [dm3] 2L_553723_SNP [dm6]	A	G	6.183e^-4	1	UPSTREAM Ets21C DOWNSTREAM rempA INTERGENIC
3R	26914130	3R_26914130_SNP [dm3] 3R_31088408_SNP [dm6]	A	C	6.183e^-4	1	INTERGENIC
2R	7191954	2R_7191954_SNP [dm3] 2R_11304449_SNP [dm6]	C	T	6.187e^-4	1	NON_SYNONYMOUS_CODING CG7741	TF binding site mE1_TFBS_sens
2L	1455244	2L_1455244_SNP [dm3] 2L_1455244_SNP [dm6]	C	T	6.201e^-4	1	INTERGENIC
3L	10916331	3L_10916331_SNP [dm3] 3L_10923231_SNP [dm6]	A	C	6.204e^-4	1	INTERGENIC
2L	7075701	2L_7075701_SNP [dm3] 2L_7075701_SNP [dm6]	G	A	6.206e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7420362	2R_7420362_SNP [dm3] 2R_11532857_SNP [dm6]	A	C	6.212e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13188580	3L_13188580_SNP [dm3] 3L_13195480_SNP [dm6]	A	C	6.220e^-4	1	INTERGENIC
X	9735227	X_9735227_SNP [dm3] X_9841194_SNP [dm6]	C	G	6.224e^-4	1	INTRON CG32698
2R	14619551	2R_14619551_SNP [dm3] 2R_18732046_SNP [dm6]	C	A	6.228e^-4	1	INTRON Hs3st-A
2L	7067893	2L_7067893_SNP [dm3] 2L_7067893_SNP [dm6]	T	G	6.230e^-4	1	UPSTREAM CG11289 INTERGENIC
3R	2287353	3R_2287353_DEL [dm3] 3R_6461631_DEL [dm6]	ACTTAATGCCTAACAACAAC...	A	6.232e^-4	1	INTERGENIC
3L	13188602	3L_13188602_SNP [dm3] 3L_13195502_SNP [dm6]	A	G	6.244e^-4	1	INTERGENIC
X	14976620	X_14976620_SNP [dm3] X_15082587_SNP [dm6]	C	T	6.244e^-4	1	UPSTREAM CG33178 DOWNSTREAM CR44960 & 1 other INTERGENIC
2L	4118489	2L_4118489_SNP [dm3] 2L_4118489_SNP [dm6]	G	C	6.248e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8286659	X_8286659_SNP [dm3] X_8392626_SNP [dm6]	G	A	6.248e^-4	1	INTERGENIC
3L	17551586	3L_17551586_SNP [dm3] 3L_17558486_SNP [dm6]	C	T	6.256e^-4	1	UPSTREAM CycT DOWNSTREAM Eip74EF INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	416270	3L_416270_SNP [dm3] 3L_416270_SNP [dm6]	G	T	6.301e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4277398	X_4277398_SNP [dm3] X_4383365_SNP [dm6]	A	C	6.308e^-4	1	DOWNSTREAM CG12688 INTERGENIC
2L	4908507	2L_4908507_SNP [dm3] 2L_4908507_SNP [dm6]	T	A	6.309e^-4	1	DOWNSTREAM hoe1 INTERGENIC
3L	1669546	3L_1669546_SNP [dm3] 3L_1669546_SNP [dm6]	C	T	6.316e^-4	1	SPLICE_SITE_REGION RabX5 UPSTREAM RpL23A DOWNSTREAM CG13930 INTRON RabX5	TF binding site mE1_TFBS_chinmo
2L	13494516	2L_13494516_SNP [dm3] 2L_13494516_SNP [dm6]	C	A	6.323e^-4	1	INTRON CG42784
3L	6071154	3L_6071154_SNP [dm3] 3L_6078054_SNP [dm6]	G	A	6.328e^-4	1	INTRON CG6619
3R	11007000	3R_11007000_DEL [dm3] 3R_15181278_DEL [dm6]	TACATT	T	6.336e^-4	1	UPSTREAM Mf INTRON Gyc88E & 1 other
2R	6076986	2R_6076986_SNP [dm3] 2R_10189481_SNP [dm6]	T	C	6.337e^-4	1	INTRON KCNQ
3L	5468126	3L_5468126_SNP [dm3] 3L_5475026_SNP [dm6]	C	T	6.392e^-4	1	INTERGENIC
3R	26256332	3R_26256332_SNP [dm3] 3R_30430610_SNP [dm6]	A	G	6.396e^-4	1	NON_SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
3R	3889375	3R_3889375_SNP [dm3] 3R_8063653_SNP [dm6]	C	G	6.402e^-4	1	INTRON mAChR-B
2L	21979881	2L_21979881_SNP [dm3] 2L_21979881_SNP [dm6]	G	A	6.417e^-4	1	INTERGENIC
2R	14598666	2R_14598666_SNP [dm3] 2R_18711161_SNP [dm6]	T	A	6.419e^-4	1	UPSTREAM pncr016:2R & 1 other INTERGENIC
2R	3291815	2R_3291815_SNP [dm3] 2R_7404310_SNP [dm6]	T	G	6.419e^-4	1	NON_SYNONYMOUS_CODING CG43267 DOWNSTREAM CG43123 INTRON Eaf
2L	7918912	2L_7918912_SNP [dm3] 2L_7918912_SNP [dm6]	G	A	6.444e^-4	1	INTRON Snoo
3R	3775526	3R_3775526_SNP [dm3] 3R_7949804_SNP [dm6]	T	A	6.461e^-4	1	INTRON dsx
X	7373802	X_7373802_SNP [dm3] X_7479769_SNP [dm6]	T	G	6.484e^-4	1	INTERGENIC
2R	8272189	2R_8272189_SNP [dm3] 2R_12384684_SNP [dm6]	C	T	6.484e^-4	1	DOWNSTREAM CG8501 INTERGENIC
2R	3356245	2R_3356245_SNP [dm3] 2R_7468740_SNP [dm6]	C	A	6.489e^-4	1	INTRON Aldh-III
X	16220964	X_16220964_SNP [dm3] X_16326931_SNP [dm6]	C	T	6.500e^-4	1	SYNONYMOUS_CODING CalpC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22912711	3R_22912711_SNP [dm3] 3R_27086989_SNP [dm6]	T	C	6.501e^-4	1	UPSTREAM Cpr97Ea INTRON Cpr97Ea
2L	13992662	2L_13992662_SNP [dm3] 2L_13992662_SNP [dm6]	C	A	6.505e^-4	1	INTRON rk
3L	1252490	3L_1252490_SNP [dm3] 3L_1252490_SNP [dm6]	T	C	6.508e^-4	1	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
3R	3834464	3R_3834464_SNP [dm3] 3R_8008742_SNP [dm6]	G	T	6.508e^-4	1	UPSTREAM CG2767 & 1 other INTRON CG11052	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	3915214	3L_3915214_INS [dm3] 3L_3915214_INS [dm6]	T	TTTAAGTAAAGTAAT...	6.516e^-4	1	INTRON Eip63F-1
X	17832523	X_17832523_INS [dm3] X_17938490_INS [dm6]	T	TT	6.519e^-4	1	INTRON Sh
X	12805364	X_12805364_SNP [dm3] X_12911331_SNP [dm6]	G	A	6.536e^-4	1	INTRON CG4645
3R	22900991	3R_22900991_SNP [dm3] 3R_27075269_SNP [dm6]	A	C	6.537e^-4	1	UPSTREAM CG14257 INTERGENIC
X	20586015	X_20586015_SNP [dm3] X_20714988_SNP [dm6]	T	C	6.562e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25139599	3R_25139599_SNP [dm3] 3R_29313877_SNP [dm6]	A	T	6.563e^-4	1	INTERGENIC
3R	27213006	3R_27213006_SNP [dm3] 3R_31387284_SNP [dm6]	A	T	6.565e^-4	1	SYNONYMOUS_CODING CG1607	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	13611240	2L_13611240_SNP [dm3] 2L_13611240_SNP [dm6]	A	G	6.571e^-4	1	INTRON kuz
3R	2323932	3R_2323932_SNP [dm3] 3R_6498210_SNP [dm6]	C	T	6.592e^-4	1	INTERGENIC
2L	3330285	2L_3330285_SNP [dm3] 2L_3330285_SNP [dm6]	T	C	6.606e^-4	1	UPSTREAM CG3285 DOWNSTREAM CG33282 INTERGENIC
2R	14645040	2R_14645040_SNP [dm3] 2R_18757535_SNP [dm6]	T	A	6.620e^-4	1	DOWNSTREAM Jabba & 1 other INTRON Jabba
3R	4928517	3R_4928517_SNP [dm3] 3R_9102795_SNP [dm6]	T	A	6.624e^-4	1	INTRON pum
2R	9804328	2R_9804328_SNP [dm3] 2R_13916823_SNP [dm6]	G	A	6.636e^-4	1	INTRON shot
X	2338411	X_2338411_SNP [dm3] X_2444378_SNP [dm6]	C	A	6.637e^-4	1	UTR_3_PRIME boi UPSTREAM tko	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
X	5483787	X_5483787_DEL [dm3] X_5589754_DEL [dm6]	TTTTTT	T	6.638e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5468123	3L_5468123_SNP [dm3] 3L_5475023_SNP [dm6]	A	G	6.640e^-4	1	INTERGENIC
X	14329290	X_14329290_SNP [dm3] X_14435257_SNP [dm6]	T	C	6.642e^-4	1	INTRON dpr8
2L	10983601	2L_10983601_SNP [dm3] 2L_10983601_SNP [dm6]	A	C	6.643e^-4	1	INTRON piwi
3L	2745422	3L_2745422_INS [dm3] 3L_2745422_INS [dm6]	T	TTTAAAATGT	6.666e^-4	1	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5922253	X_5922253_SNP [dm3] X_6028220_SNP [dm6]	T	C	6.672e^-4	1	INTERGENIC
2L	3339014	2L_3339014_SNP [dm3] 2L_3339014_SNP [dm6]	A	G	6.679e^-4	1	INTRON E23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12958019	2L_12958019_INS [dm3] 2L_12958019_INS [dm6]	GG	CTTTACAAA	6.680e^-4	1	INTERGENIC
2R	7221952	2R_7221952_SNP [dm3] 2R_11334447_SNP [dm6]	C	T	6.690e^-4	1	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15476615	3L_15476615_SNP [dm3] 3L_15483515_SNP [dm6]	C	A	6.691e^-4	1	DOWNSTREAM Ran-like INTERGENIC
3R	466135	3R_466135_SNP [dm3] 3R_4640413_SNP [dm6]	C	A	6.704e^-4	1	INTRON CG9775	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12182730	3L_12182730_SNP [dm3] 3L_12189630_SNP [dm6]	A	G	6.714e^-4	1	NON_SYNONYMOUS_CODING Est-6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15399179	2R_15399179_SNP [dm3] 2R_19511674_SNP [dm6]	C	T	6.721e^-4	1	SYNONYMOUS_STOP Ir56d DOWNSTREAM Ir56c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3887121	3R_3887121_SNP [dm3] 3R_8061399_SNP [dm6]	G	A	6.726e^-4	1	INTRON mAChR-B	TF binding site mE1_TFBS_inv
3L	10456434	3L_10456434_SNP [dm3] 3L_10463334_SNP [dm6]	G	A	6.731e^-4	1	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13817846	2R_13817846_SNP [dm3] 2R_17930341_SNP [dm6]	C	T	6.733e^-4	1	INTERGENIC
3R	3746517	3R_3746517_SNP [dm3] 3R_7920795_SNP [dm6]	G	A	6.781e^-4	1	NON_SYNONYMOUS_CODING lds UPSTREAM CG10445	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5823432	2L_5823432_SNP [dm3] 2L_5823432_SNP [dm6]	G	A	6.785e^-4	1	UPSTREAM TrissinR INTERGENIC
2L	1059412	2L_1059412_SNP [dm3] 2L_1059412_SNP [dm6]	A	T	6.794e^-4	1	INTRON S
2L	3992418	2L_3992418_SNP [dm3] 2L_3992418_SNP [dm6]	G	A	6.795e^-4	1	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15051265	2R_15051265_SNP [dm3] 2R_19163760_SNP [dm6]	G	A	6.797e^-4	1	UPSTREAM CG10737 DOWNSTREAM ena INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	17654495	X_17654495_INS [dm3] X_17760462_INS [dm6]	C	CAC	6.800e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17393810	X_17393810_SNP [dm3] X_17499777_SNP [dm6]	G	A	6.805e^-4	1	INTRON CG43658
3L	2770533	3L_2770533_SNP [dm3] 3L_2770533_SNP [dm6]	A	G	6.808e^-4	1	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18220885	X_18220885_SNP [dm3] X_18326852_SNP [dm6]	G	A	6.824e^-4	1	INTRON CG6123
2L	15005115	2L_15005115_SNP [dm3] 2L_15005115_SNP [dm6]	G	A	6.840e^-4	1	UPSTREAM dyn-p25 INTERGENIC
2R	4139873	2R_4139873_SNP [dm3] 2R_8252368_SNP [dm6]	G	C	6.842e^-4	1	INTERGENIC
3L	18132469	3L_18132469_SNP [dm3] 3L_18139369_SNP [dm6]	A	C	6.843e^-4	1	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1912719	2L_1912719_SNP [dm3] 2L_1912719_SNP [dm6]	A	G	6.844e^-4	1	INTRON CG7337
X	12284902	X_12284902_SNP [dm3] X_12390869_SNP [dm6]	A	T	6.855e^-4	1	INTERGENIC
3R	9734074	3R_9734074_SNP [dm3] 3R_13908352_SNP [dm6]	C	T	6.859e^-4	1	INTERGENIC
3L	17458321	3L_17458321_DEL [dm3] 3L_17465221_DEL [dm6]	TAAACTGAAGATTTCGCCTT...	T	6.861e^-4	1	UPSTREAM CG7603 INTERGENIC
2L	8758139	2L_8758139_SNP [dm3] 2L_8758139_SNP [dm6]	A	T	6.873e^-4	1	INTERGENIC
X	18816457	X_18816457_SNP [dm3] X_18922424_SNP [dm6]	A	G	6.923e^-4	1	INTERGENIC
3L	2795097	3L_2795097_SNP [dm3] 3L_2795097_SNP [dm6]	A	C	6.927e^-4	1	INTRON CG43444	TF binding site mE1_TFBS_cad
3R	10233121	3R_10233121_SNP [dm3] 3R_14407399_SNP [dm6]	G	T	6.931e^-4	1	INTRON cv-c
2R	14855377	2R_14855377_SNP [dm3] 2R_18967872_SNP [dm6]	A	G	6.933e^-4	1	INTERGENIC
2R	5309481	2R_5309481_SNP [dm3] 2R_9421976_SNP [dm6]	G	C	6.946e^-4	1	UTR_3_PRIME CG13955	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	21838560	2L_21838560_SNP [dm3] 2L_21838560_SNP [dm6]	A	G	6.951e^-4	1	INTERGENIC
2R	9412358	2R_9412358_SNP [dm3] 2R_13524853_SNP [dm6]	T	C	6.972e^-4	1	UPSTREAM CG13332 INTRON Vmat	TF binding site mE1_TFBS_cad
3L	1668312	3L_1668312_SNP [dm3] 3L_1668312_SNP [dm6]	G	A	6.977e^-4	1	DOWNSTREAM RabX5 INTRON RpL23A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5360385	2R_5360385_SNP [dm3] 2R_9472880_SNP [dm6]	A	T	6.986e^-4	1	SYNONYMOUS_CODING Camta	TF binding site mE1_TFBS_cad
3R	26775670	3R_26775670_SNP [dm3] 3R_30949948_SNP [dm6]	T	A	6.990e^-4	1	INTERGENIC
X	16304934	X_16304934_SNP [dm3] X_16410901_SNP [dm6]	C	A	6.998e^-4	1	INTRON CG4301
3R	3867830	3R_3867830_SNP [dm3] 3R_8042108_SNP [dm6]	C	G	7.001e^-4	1	DOWNSTREAM CG43060 INTRON CG43060
2R	6684511	2R_6684511_DEL [dm3] 2R_10797006_DEL [dm6]	ACAACTTGTA	A	7.003e^-4	1	INTRON CG33144
3R	26578062	3R_26578062_SNP [dm3] 3R_30752340_SNP [dm6]	C	T	7.009e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17824235	3R_17824235_SNP [dm3] 3R_21998513_SNP [dm6]	C	T	7.015e^-4	1	INTRON Eip93F
X	12353098	X_12353098_SNP [dm3] X_12459065_SNP [dm6]	T	C	7.024e^-4	1	DOWNSTREAM Rab40 INTERGENIC
X	13841334	X_13841334_DEL [dm3] X_13947301_DEL [dm6]	CAATGGAGGAAC...	C	7.027e^-4	1	UPSTREAM mamo INTRON mamo
2L	13754343	2L_13754343_SNP [dm3] 2L_13754343_SNP [dm6]	G	A	7.031e^-4	1	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
3R	19442381	3R_19442381_SNP [dm3] 3R_23616659_SNP [dm6]	A	G	7.032e^-4	1	INTRON CG31145
3R	19442397	3R_19442397_SNP [dm3] 3R_23616675_SNP [dm6]	A	T	7.032e^-4	1	INTRON CG31145

By genomic position
Variant impact
Gene name

Cuticul_2_Me_C29_C30 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results