DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.113e^-13)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.0004686

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.8991	0.0318

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1939 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6395533	3L_6395533_SNP [dm3] 3L_6402433_SNP [dm6]	G	A	3.558e^-7	0.667	INTRON CG42747
X	4300225	X_4300225_SNP [dm3] X_4406192_SNP [dm6]	T	C	1.104e^-6	0.735	INTRON CR32773	TF binding site mE1_TFBS_chinmo
3R	25797603	3R_25797603_SNP [dm3] 3R_29971881_SNP [dm6]	G	C	1.889e^-6	0.735	INTERGENIC
3R	25818024	3R_25818024_SNP [dm3] 3R_29992302_SNP [dm6]	A	G	2.070e^-6	0.735	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26505170	3R_26505170_SNP [dm3] 3R_30679448_SNP [dm6]	C	T	2.846e^-6	0.735	INTERGENIC
3L	735620	3L_735620_SNP [dm3] 3L_735620_SNP [dm6]	G	T	3.202e^-6	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6396334	3L_6396334_SNP [dm3] 3L_6403234_SNP [dm6]	G	C	4.058e^-6	0.735	INTRON CG42747
2R	19122571	2R_19122571_SNP [dm3] 2R_23235048_SNP [dm6]	T	C	4.410e^-6	0.735	INTERGENIC
3L	571533	3L_571533_SNP [dm3] 3L_571533_SNP [dm6]	G	C	5.229e^-6	0.735	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	571587	3L_571587_SNP [dm3] 3L_571587_SNP [dm6]	T	G	5.229e^-6	0.735	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8341839	3R_8341839_DEL [dm3] 3R_12516117_DEL [dm6]	AGGAACTTAAATACACAATT...	A	5.530e^-6	0.735	INTRON Octbeta3R
3R	8216558	3R_8216558_SNP [dm3] 3R_12390836_SNP [dm6]	C	T	5.626e^-6	0.735	UTR_3_PRIME CG10096 & 1 other INTRON CG34402
3L	12561460	3L_12561460_SNP [dm3] 3L_12568360_SNP [dm6]	C	A	5.721e^-6	0.735	INTRON sowah
3L	571997	3L_571997_SNP [dm3] 3L_571997_SNP [dm6]	G	A	5.750e^-6	0.735	INTRON hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26505012	3R_26505012_SNP [dm3] 3R_30679290_SNP [dm6]	C	T	5.879e^-6	0.735	INTERGENIC
3R	14335563	3R_14335563_SNP [dm3] 3R_18509841_SNP [dm6]	T	C	7.300e^-6	0.856	INTRON fru
2R	19122570	2R_19122570_SNP [dm3] 2R_23235047_SNP [dm6]	T	C	1.087e^-5	0.952	INTERGENIC
3R	4858700	3R_4858700_SNP [dm3] 3R_9032978_SNP [dm6]	C	T	1.163e^-5	0.952	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4878527	X_4878527_SNP [dm3] X_4984494_SNP [dm6]	G	A	1.169e^-5	0.952	INTRON CR44833	regulatory region REDfly_CRMs
3R	25635394	3R_25635394_SNP [dm3] 3R_29809672_SNP [dm6]	T	G	1.232e^-5	0.952	NON_SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26512851	3R_26512851_SNP [dm3] 3R_30687129_SNP [dm6]	T	A	1.238e^-5	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2503646	X_2503646_SNP [dm3] X_2609613_SNP [dm6]	A	G	1.344e^-5	0.952	SYNONYMOUS_CODING CG8636 UPSTREAM Bzd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20367863	2R_20367863_SNP [dm3] 2R_24480340_SNP [dm6]	A	G	1.451e^-5	0.952	INTRON CG13579
3R	8264461	3R_8264461_SNP [dm3] 3R_12438739_SNP [dm6]	G	A	1.514e^-5	0.952	NON_SYNONYMOUS_CODING CG17207 UPSTREAM Desat1 DOWNSTREAM Desat2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	15077112	2L_15077112_SNP [dm3] 2L_15077112_SNP [dm6]	G	T	1.528e^-5	0.952	INTRON CG15270
3R	26087341	3R_26087341_SNP [dm3] 3R_30261619_SNP [dm6]	A	T	1.572e^-5	0.952	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	19123769	2R_19123769_SNP [dm3] 2R_23236246_SNP [dm6]	A	G	1.921e^-5	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12893217	3L_12893217_SNP [dm3] 3L_12900117_SNP [dm6]	A	T	1.923e^-5	0.952	INTERGENIC
3R	17874708	3R_17874708_INS [dm3] 3R_22048986_INS [dm6]	C	CAGGC	1.954e^-5	0.952	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	19287727	3R_19287727_SNP [dm3] 3R_23462005_SNP [dm6]	C	G	1.987e^-5	0.952	INTRON CG4374
2R	10620774	2R_10620774_SNP [dm3] 2R_14733269_SNP [dm6]	C	T	2.018e^-5	0.952	INTERGENIC
3R	8286537	3R_8286537_SNP [dm3] 3R_12460815_SNP [dm6]	C	T	2.057e^-5	0.952	UPSTREAM CG5961 INTRON CG12267	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	4463463	3R_4463463_SNP [dm3] 3R_8637741_SNP [dm6]	G	A	2.189e^-5	0.952	INTERGENIC
3R	25818009	3R_25818009_SNP [dm3] 3R_29992287_SNP [dm6]	G	T	2.286e^-5	0.952	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13713600	2R_13713600_SNP [dm3] 2R_17826095_SNP [dm6]	A	G	2.305e^-5	0.952	INTRON grh	transposable element FlyBase
3R	23509134	3R_23509134_SNP [dm3] 3R_27683412_SNP [dm6]	C	T	2.355e^-5	0.952	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6396124	3L_6396124_SNP [dm3] 3L_6403024_SNP [dm6]	A	G	2.361e^-5	0.952	INTRON CG42747
3R	2148209	3R_2148209_SNP [dm3] 3R_6322487_SNP [dm6]	G	A	2.450e^-5	0.952	INTRON Osi17
3R	25797509	3R_25797509_SNP [dm3] 3R_29971787_SNP [dm6]	T	C	2.474e^-5	0.952	INTERGENIC
3R	16861822	3R_16861822_SNP [dm3] 3R_21036100_SNP [dm6]	C	G	2.510e^-5	0.952	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12788320	2R_12788320_SNP [dm3] 2R_16900815_SNP [dm6]	A	C	2.538e^-5	0.952	INTRON inaC
3L	14514049	3L_14514049_SNP [dm3] 3L_14520949_SNP [dm6]	T	C	2.574e^-5	0.952	INTRON bbg & 1 other
2R	10711850	2R_10711850_DEL [dm3] 2R_14824345_DEL [dm6]	AA	A	2.587e^-5	0.952	EXON CR45329
2R	12887593	2R_12887593_SNP [dm3] 2R_17000088_SNP [dm6]	A	G	2.935e^-5	0.952	SYNONYMOUS_CODING ste24b DOWNSTREAM ste24a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6305228	2R_6305228_SNP [dm3] 2R_10417723_SNP [dm6]	T	C	2.963e^-5	0.952	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	9136386	2R_9136386_SNP [dm3] 2R_13248881_SNP [dm6]	C	T	2.998e^-5	0.952	DOWNSTREAM CG4712 & 1 other INTERGENIC
3L	582018	3L_582018_SNP [dm3] 3L_582018_SNP [dm6]	C	G	3.033e^-5	0.952	SYNONYMOUS_CODING Ppm1 DOWNSTREAM hipk & 1 other
3R	26514626	3R_26514626_SNP [dm3] 3R_30688904_SNP [dm6]	C	T	3.060e^-5	0.952	INTERGENIC
3L	6396814	3L_6396814_SNP [dm3] 3L_6403714_SNP [dm6]	T	A	3.064e^-5	0.952	INTRON CG42747
2L	2526054	2L_2526054_SNP [dm3] 2L_2526054_SNP [dm6]	T	C	3.097e^-5	0.952	INTERGENIC
2R	18528113	2R_18528113_SNP [dm3] 2R_22640608_SNP [dm6]	T	A	3.134e^-5	0.952	UTR_3_PRIME RpS24 UPSTREAM CG3732	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	14122277	3L_14122277_SNP [dm3] 3L_14129177_SNP [dm6]	C	A	3.164e^-5	0.952	INTRON Sox21b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6395626	3L_6395626_SNP [dm3] 3L_6402526_SNP [dm6]	A	T	3.176e^-5	0.952	INTRON CG42747
3R	21683721	3R_21683721_SNP [dm3] 3R_25857999_SNP [dm6]	T	C	3.189e^-5	0.952	INTRON CG5890
3L	9137472	3L_9137472_SNP [dm3] 3L_9144372_SNP [dm6]	A	G	3.246e^-5	0.952	UTR_3_PRIME nwk UPSTREAM mir-4940 INTRON nwk	TF binding site mE1_TFBS_cad
2L	9576805	2L_9576805_SNP [dm3] 2L_9576805_SNP [dm6]	A	T	3.251e^-5	0.952	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16551859	3L_16551859_SNP [dm3] 3L_16558759_SNP [dm6]	C	T	3.270e^-5	0.952	DOWNSTREAM CG4229 INTERGENIC
X	10625290	X_10625290_DEL [dm3] X_10731257_DEL [dm6]	AAA	G	3.282e^-5	0.952	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6305220	2R_6305220_SNP [dm3] 2R_10417715_SNP [dm6]	G	T	3.353e^-5	0.952	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13325132	3L_13325132_SNP [dm3] 3L_13332032_SNP [dm6]	A	G	3.372e^-5	0.952	INTERGENIC
3R	1756602	3R_1756602_SNP [dm3] 3R_5930880_SNP [dm6]	A	G	3.376e^-5	0.952	INTRON CG34113
3L	8078005	3L_8078005_SNP [dm3] 3L_8084905_SNP [dm6]	T	C	3.447e^-5	0.952	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
3L	6395564	3L_6395564_SNP [dm3] 3L_6402464_SNP [dm6]	G	A	3.455e^-5	0.952	INTRON CG42747
2R	7462506	2R_7462506_SNP [dm3] 2R_11575001_SNP [dm6]	C	A	3.518e^-5	0.952	INTERGENIC
3L	6396908	3L_6396908_SNP [dm3] 3L_6403808_SNP [dm6]	T	A	3.539e^-5	0.952	INTRON CG42747
3R	1795589	3R_1795589_SNP [dm3] 3R_5969867_SNP [dm6]	G	A	3.577e^-5	0.952	UPSTREAM CR44926 INTERGENIC
2R	14172296	2R_14172296_SNP [dm3] 2R_18284791_SNP [dm6]	G	A	3.610e^-5	0.952	DOWNSTREAM sbb INTRON sbb
3L	8077974	3L_8077974_SNP [dm3] 3L_8084874_SNP [dm6]	C	T	3.631e^-5	0.952	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
2R	14172307	2R_14172307_SNP [dm3] 2R_18284802_SNP [dm6]	T	A	3.659e^-5	0.952	DOWNSTREAM sbb INTRON sbb
2L	9576778	2L_9576778_SNP [dm3] 2L_9576778_SNP [dm6]	T	C	3.666e^-5	0.952	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25792211	3R_25792211_SNP [dm3] 3R_29966489_SNP [dm6]	C	G	3.829e^-5	0.952	INTRON TkR99D
2R	14193734	2R_14193734_SNP [dm3] 2R_18306229_SNP [dm6]	G	A	3.946e^-5	0.952	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
X	5971161	X_5971161_SNP [dm3] X_6077128_SNP [dm6]	G	A	3.957e^-5	0.952	INTRON CG4666
X	15431207	X_15431207_SNP [dm3] X_15537174_SNP [dm6]	G	T	3.996e^-5	0.952	INTRON Ac13E
3R	4040573	3R_4040573_SNP [dm3] 3R_8214851_SNP [dm6]	A	T	4.016e^-5	0.952	INTERGENIC
3R	23000258	3R_23000258_DEL [dm3] 3R_27174536_DEL [dm6]	AT	A	4.140e^-5	0.952	INTRON Ser	TF binding site mE1_TFBS_cad
3L	4797099	3L_4797099_SNP [dm3] 3L_4797099_SNP [dm6]	G	A	4.141e^-5	0.952	DOWNSTREAM RhoGEF64C INTERGENIC
3R	8350023	3R_8350023_SNP [dm3] 3R_12524301_SNP [dm6]	C	A	4.163e^-5	0.952	INTRON Octbeta3R
2R	14362710	2R_14362710_SNP [dm3] 2R_18475205_SNP [dm6]	C	A	4.203e^-5	0.952	INTRON CG30116
3R	25796966	3R_25796966_SNP [dm3] 3R_29971244_SNP [dm6]	A	T	4.216e^-5	0.952	INTERGENIC
3R	26513130	3R_26513130_SNP [dm3] 3R_30687408_SNP [dm6]	G	A	4.233e^-5	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16514975	3L_16514975_SNP [dm3] 3L_16521875_SNP [dm6]	G	T	4.268e^-5	0.952	INTRON CG43373
X	20396997	X_20396997_DEL [dm3] X_20525970_DEL [dm6]	TA	T	4.344e^-5	0.952	INTERGENIC	transposable element FlyBase
2L	3396440	2L_3396440_SNP [dm3] 2L_3396440_SNP [dm6]	G	A	4.371e^-5	0.952	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6396925	3L_6396925_SNP [dm3] 3L_6403825_SNP [dm6]	A	T	4.495e^-5	0.952	INTRON CG42747
3R	25834120	3R_25834120_SNP [dm3] 3R_30008398_SNP [dm6]	T	A	4.526e^-5	0.952	INTRON Nlp & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	19232634	2R_19232634_SNP [dm3] 2R_23345111_SNP [dm6]	T	C	4.548e^-5	0.952	NON_SYNONYMOUS_CODING CG3502
3L	12893221	3L_12893221_SNP [dm3] 3L_12900121_SNP [dm6]	T	C	4.549e^-5	0.952	INTERGENIC
3R	24844793	3R_24844793_INS [dm3] 3R_29019071_INS [dm6]	A	AA	4.550e^-5	0.952	INTRON wat
2R	18369046	2R_18369046_SNP [dm3] 2R_22481541_SNP [dm6]	G	C	4.684e^-5	0.952	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23515540	3R_23515540_SNP [dm3] 3R_27689818_SNP [dm6]	T	C	4.724e^-5	0.952	NON_SYNONYMOUS_CODING CG12880	TF binding site mE1_TFBS_chinmo
3R	17912729	3R_17912729_SNP [dm3] 3R_22087007_SNP [dm6]	G	A	4.757e^-5	0.952	UPSTREAM CG5791 & 1 other INTRON CG5778
3L	6396416	3L_6396416_SNP [dm3] 3L_6403316_SNP [dm6]	G	A	4.783e^-5	0.952	INTRON CG42747
2L	6539813	2L_6539813_SNP [dm3] 2L_6539813_SNP [dm6]	A	G	4.850e^-5	0.952	INTRON eya
2R	5234951	2R_5234951_SNP [dm3] 2R_9347446_SNP [dm6]	T	A	4.880e^-5	0.952	UTR_3_PRIME Or45a INTRON CG13954 & 1 other
2R	11690078	2R_11690078_SNP [dm3] 2R_15802573_SNP [dm6]	A	C	4.922e^-5	0.952	INTRON Zasp52 & 1 other
3R	11128835	3R_11128835_SNP [dm3] 3R_15303113_SNP [dm6]	A	C	4.975e^-5	0.952	INTRON Tm1
2R	13441356	2R_13441356_SNP [dm3] 2R_17553851_SNP [dm6]	G	T	5.032e^-5	0.952	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_sens
2R	7264227	2R_7264227_SNP [dm3] 2R_11376722_SNP [dm6]	T	A	5.092e^-5	0.952	SYNONYMOUS_CODING CG13203 DOWNSTREAM Tsp47F	TF binding site mE1_TFBS_chinmo
3L	19259102	3L_19259102_SNP [dm3] 3L_19266002_SNP [dm6]	A	C	5.198e^-5	0.952	UPSTREAM CG45081 DOWNSTREAM CG9629 INTRON CG9666 & 1 other
2L	2414399	2L_2414399_SNP [dm3] 2L_2414399_SNP [dm6]	T	C	5.216e^-5	0.952	DOWNSTREAM CG31948 INTRON CG18641
3L	10642157	3L_10642157_SNP [dm3] 3L_10649057_SNP [dm6]	G	A	5.369e^-5	0.952	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
3R	8353044	3R_8353044_SNP [dm3] 3R_12527322_SNP [dm6]	C	T	5.369e^-5	0.952	INTRON Octbeta3R & 1 other
X	4117063	X_4117063_SNP [dm3] X_4223030_SNP [dm6]	T	C	5.493e^-5	0.952	SYNONYMOUS_CODING CG15570
2L	9576780	2L_9576780_SNP [dm3] 2L_9576780_SNP [dm6]	C	T	5.495e^-5	0.952	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
X	17649085	X_17649085_SNP [dm3] X_17755052_SNP [dm6]	A	G	5.724e^-5	0.952	INTERGENIC
3L	14514091	3L_14514091_SNP [dm3] 3L_14520991_SNP [dm6]	T	C	5.730e^-5	0.952	INTRON bbg & 1 other
2R	9122776	2R_9122776_SNP [dm3] 2R_13235271_SNP [dm6]	T	A	5.756e^-5	0.952	UTR_5_PRIME CG4670 UPSTREAM CG4676 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19215740	3R_19215740_SNP [dm3] 3R_23390018_SNP [dm6]	T	C	5.817e^-5	0.952	UPSTREAM CR43387 INTERGENIC
3L	14499583	3L_14499583_SNP [dm3] 3L_14506483_SNP [dm6]	C	T	5.932e^-5	0.952	INTRON bbg
2L	9576758	2L_9576758_SNP [dm3] 2L_9576758_SNP [dm6]	T	C	5.986e^-5	0.952	UTR_5_PRIME Mtpalpha	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2R	13005186	2R_13005186_SNP [dm3] 2R_17117681_SNP [dm6]	T	C	6.001e^-5	0.952	DOWNSTREAM Amy-p INTERGENIC
3R	25792631	3R_25792631_SNP [dm3] 3R_29966909_SNP [dm6]	T	C	6.043e^-5	0.952	INTRON TkR99D	TF binding site mE1_TFBS_chinmo
3R	23512652	3R_23512652_DEL [dm3] 3R_27686930_DEL [dm6]	CTTC	C	6.085e^-5	0.952	SPLICE_SITE_REGION CG31055 INTRON CG12880 & 1 other	TF binding site mE1_TFBS_chinmo
3R	2139791	3R_2139791_SNP [dm3] 3R_6314069_SNP [dm6]	C	T	6.209e^-5	0.952	INTRON Osi17
3L	10935902	3L_10935902_SNP [dm3] 3L_10942802_SNP [dm6]	C	T	6.278e^-5	0.952	INTERGENIC
3R	25821908	3R_25821908_SNP [dm3] 3R_29996186_SNP [dm6]	T	A	6.374e^-5	0.952	NON_SYNONYMOUS_CODING Sas-6 UPSTREAM CG7903 DOWNSTREAM CG15525	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7263459	2R_7263459_SNP [dm3] 2R_11375954_SNP [dm6]	T	A	6.547e^-5	0.952	INTRON CG13203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4797139	3L_4797139_SNP [dm3] 3L_4797139_SNP [dm6]	G	T	6.641e^-5	0.952	DOWNSTREAM RhoGEF64C INTERGENIC
2L	3396448	2L_3396448_SNP [dm3] 2L_3396448_SNP [dm6]	A	G	6.753e^-5	0.952	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16163701	2L_16163701_DEL [dm3] 2L_16163701_DEL [dm6]	TGTCTGCGCGGTCA...	G	6.758e^-5	0.952	INTERGENIC
3R	7728163	3R_7728163_SNP [dm3] 3R_11902441_SNP [dm6]	A	T	6.768e^-5	0.952	INTRON Cad87A
2R	19961450	2R_19961450_SNP [dm3] 2R_24073927_SNP [dm6]	G	T	6.801e^-5	0.952	UPSTREAM Mlp60A DOWNSTREAM CG3209 INTERGENIC
2R	9123877	2R_9123877_SNP [dm3] 2R_13236372_SNP [dm6]	T	C	6.813e^-5	0.952	SYNONYMOUS_CODING CG4676 DOWNSTREAM CG4679	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17316868	3L_17316868_SNP [dm3] 3L_17323768_SNP [dm6]	C	A	6.889e^-5	0.952	NON_SYNONYMOUS_CODING CG13724 DOWNSTREAM CG13725
3R	16522330	3R_16522330_SNP [dm3] 3R_20696608_SNP [dm6]	G	T	7.077e^-5	0.952	INTRON Oamb
2L	21725821	2L_21725821_SNP [dm3] 2L_21725821_SNP [dm6]	A	C	7.141e^-5	0.952	INTRON CG31619	transposable element FlyBase
3R	8161603	3R_8161603_SNP [dm3] 3R_12335881_SNP [dm6]	C	G	7.228e^-5	0.952	UPSTREAM CR44941 INTERGENIC
2L	19637775	2L_19637775_DEL [dm3] 2L_19637775_DEL [dm6]	ATAAATAA	A	7.277e^-5	0.952	INTRON Lar
2R	9571880	2R_9571880_SNP [dm3] 2R_13684375_SNP [dm6]	G	A	7.417e^-5	0.952	INTRON fas
3L	9659924	3L_9659924_SNP [dm3] 3L_9666824_SNP [dm6]	T	A	7.435e^-5	0.952	INTRON fry
3R	16522461	3R_16522461_SNP [dm3] 3R_20696739_SNP [dm6]	C	T	7.638e^-5	0.952	INTRON Oamb
3R	8349986	3R_8349986_SNP [dm3] 3R_12524264_SNP [dm6]	T	C	7.661e^-5	0.952	INTRON Octbeta3R
3R	10892546	3R_10892546_SNP [dm3] 3R_15066824_SNP [dm6]	T	C	7.683e^-5	0.952	SYNONYMOUS_CODING dpr9
3R	15596110	3R_15596110_SNP [dm3] 3R_19770388_SNP [dm6]	G	T	7.701e^-5	0.952	UTR_3_PRIME GluClalpha DOWNSTREAM CG6300 INTRON GluClalpha
X	10809680	X_10809680_SNP [dm3] X_10915647_SNP [dm6]	C	T	7.706e^-5	0.952	NON_SYNONYMOUS_CODING CG43901 INTRON CG43901	TF binding site mE1_TFBS_chinmo
3L	16549315	3L_16549315_INS [dm3] 3L_16556215_INS [dm6]	T	TGT	7.740e^-5	0.952	UPSTREAM CG4229 INTERGENIC
3R	26512811	3R_26512811_SNP [dm3] 3R_30687089_SNP [dm6]	C	A	7.870e^-5	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4362481	X_4362481_SNP [dm3] X_4468448_SNP [dm6]	A	C	7.979e^-5	0.952	INTRON bi & 1 other	TF binding site mE1_TFBS_chinmo
2R	20366350	2R_20366350_INS [dm3] 2R_24478827_INS [dm6]	C	CC	7.985e^-5	0.952	INTRON CG13579
3R	2219719	3R_2219719_SNP [dm3] 3R_6393997_SNP [dm6]	G	C	8.037e^-5	0.952	INTRON Dmtn
2R	20359547	2R_20359547_SNP [dm3] 2R_24472024_SNP [dm6]	G	C	8.068e^-5	0.952	UPSTREAM CG3492 INTRON CG13579
3R	24599566	3R_24599566_INS [dm3] 3R_28773844_INS [dm6]	T	TT	8.080e^-5	0.952	INTERGENIC
2L	5066314	2L_5066314_SNP [dm3] 2L_5066314_SNP [dm6]	A	C	8.148e^-5	0.952	INTRON qtc
3R	8083034	3R_8083034_SNP [dm3] 3R_12257312_SNP [dm6]	A	T	8.234e^-5	0.952	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	15104877	2L_15104877_SNP [dm3] 2L_15104877_SNP [dm6]	C	T	8.241e^-5	0.952	INTERGENIC
2L	16009872	2L_16009872_SNP [dm3] 2L_16009872_SNP [dm6]	A	C	8.251e^-5	0.952	INTRON beat-Ic
3R	7728095	3R_7728095_SNP [dm3] 3R_11902373_SNP [dm6]	T	C	8.310e^-5	0.952	INTRON Cad87A
3R	2699663	3R_2699663_SNP [dm3] 3R_6873941_SNP [dm6]	T	A	8.357e^-5	0.952	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	9576761	2L_9576761_SNP [dm3] 2L_9576761_SNP [dm6]	G	A	8.379e^-5	0.952	START_GAINED Mtpalpha UTR_5_PRIME Mtpalpha	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
X	7619008	X_7619008_SNP [dm3] X_7724975_SNP [dm6]	T	C	8.401e^-5	0.952	SYNONYMOUS_CODING Hira
2L	4896797	2L_4896797_SNP [dm3] 2L_4896797_SNP [dm6]	A	T	8.487e^-5	0.952	INTRON CG3036
2R	14281057	2R_14281057_SNP [dm3] 2R_18393552_SNP [dm6]	G	T	8.530e^-5	0.952	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_inv
X	2458891	X_2458891_SNP [dm3] X_2564858_SNP [dm6]	T	A	8.535e^-5	0.952	INTRON Pdfr
2R	18369048	2R_18369048_SNP [dm3] 2R_22481543_SNP [dm6]	G	A	8.537e^-5	0.952	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23558732	3R_23558732_SNP [dm3] 3R_27733010_SNP [dm6]	C	A	8.573e^-5	0.952	INTERGENIC
3L	6396662	3L_6396662_SNP [dm3] 3L_6403562_SNP [dm6]	A	G	8.580e^-5	0.952	INTRON CG42747
3L	6316959	3L_6316959_SNP [dm3] 3L_6323859_SNP [dm6]	C	T	8.684e^-5	0.952	INTERGENIC
3R	18705710	3R_18705710_SNP [dm3] 3R_22879988_SNP [dm6]	T	A	8.726e^-5	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19963863	3L_19963863_SNP [dm3] 3L_19970763_SNP [dm6]	T	G	8.786e^-5	0.952	INTRON Ac76E	TF binding site mE1_TFBS_chinmo
2R	14362981	2R_14362981_SNP [dm3] 2R_18475476_SNP [dm6]	A	G	8.787e^-5	0.952	INTRON CG30116
2R	14168901	2R_14168901_SNP [dm3] 2R_18281396_SNP [dm6]	A	G	8.841e^-5	0.952	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1190108	2L_1190108_DEL [dm3] 2L_1190108_DEL [dm6]	AA	A	8.867e^-5	0.952	INTRON CG5001
2L	9844319	2L_9844319_SNP [dm3] 2L_9844319_SNP [dm6]	C	T	8.920e^-5	0.952	INTRON nAChRalpha6
3L	13892034	3L_13892034_SNP [dm3] 3L_13898934_SNP [dm6]	A	G	8.961e^-5	0.952	INTRON dysc
2R	9148598	2R_9148598_SNP [dm3] 2R_13261093_SNP [dm6]	A	C	9.208e^-5	0.952	INTRON CG42319
2R	14629572	2R_14629572_SNP [dm3] 2R_18742067_SNP [dm6]	T	G	9.249e^-5	0.952	UPSTREAM CR30121 DOWNSTREAM CG18609 INTRON Hs3st-A
3R	10892557	3R_10892557_SNP [dm3] 3R_15066835_SNP [dm6]	C	T	9.264e^-5	0.952	NON_SYNONYMOUS_CODING dpr9
2R	20359092	2R_20359092_SNP [dm3] 2R_24471569_SNP [dm6]	T	A	9.310e^-5	0.952	INTRON CG13579
3L	11386025	3L_11386025_SNP [dm3] 3L_11392925_SNP [dm6]	A	T	9.341e^-5	0.952	INTERGENIC
3L	3889754	3L_3889754_SNP [dm3] 3L_3889754_SNP [dm6]	T	A	9.569e^-5	0.952	INTERGENIC
2L	2414393	2L_2414393_INS [dm3] 2L_2414393_INS [dm6]	T	TT	9.662e^-5	0.952	DOWNSTREAM CG31948 INTRON CG18641
2R	20366150	2R_20366150_SNP [dm3] 2R_24478627_SNP [dm6]	C	T	9.709e^-5	0.952	INTRON CG13579
3R	21252283	3R_21252283_SNP [dm3] 3R_25426561_SNP [dm6]	T	A	9.771e^-5	0.952	INTRON Fur1
X	16012560	X_16012560_SNP [dm3] X_16118527_SNP [dm6]	A	G	9.807e^-5	0.952	UTR_3_PRIME disco-r DOWNSTREAM disco-r
3L	1258824	3L_1258824_SNP [dm3] 3L_1258824_SNP [dm6]	G	A	9.843e^-5	0.952	INTRON CG9134
X	13977568	X_13977568_SNP [dm3] X_14083535_SNP [dm6]	G	T	9.890e^-5	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	1412288	3R_1412288_SNP [dm3] 3R_5586566_SNP [dm6]	G	A	9.890e^-5	0.952	NON_SYNONYMOUS_CODING CG2926	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1352568	3R_1352568_SNP [dm3] 3R_5526846_SNP [dm6]	T	G	9.926e^-5	0.952	INTRON Itp-r83A
2R	11815924	2R_11815924_SNP [dm3] 2R_15928419_SNP [dm6]	C	T	9.944e^-5	0.952	UPSTREAM bdg INTRON bdg
2R	16015581	2R_16015581_SNP [dm3] 2R_20128076_SNP [dm6]	A	G	9.985e^-5	0.952	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16054180	2L_16054180_SNP [dm3] 2L_16054180_SNP [dm6]	A	T	1.000e^-4	0.952	INTRON beat-Ia
X	19091984	X_19091984_SNP [dm3] X_19197951_SNP [dm6]	G	T	1.014e^-4	0.952	UTR_3_PRIME CG7990
3R	22406392	3R_22406392_SNP [dm3] 3R_26580670_SNP [dm6]	T	G	1.016e^-4	0.952	INTRON scrib	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5971158	X_5971158_SNP [dm3] X_6077125_SNP [dm6]	G	A	1.018e^-4	0.952	INTRON CG4666
3R	1405717	3R_1405717_SNP [dm3] 3R_5579995_SNP [dm6]	G	T	1.019e^-4	0.952	UTR_3_PRIME CG2926 DOWNSTREAM CRMP	TF binding site mE1_TFBS_kn
2R	16014278	2R_16014278_SNP [dm3] 2R_20126773_SNP [dm6]	A	T	1.020e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25816292	3R_25816292_SNP [dm3] 3R_29990570_SNP [dm6]	C	T	1.029e^-4	0.952	UTR_3_PRIME CG7896 DOWNSTREAM Acph-1	TF binding site mE1_TFBS_cad
3R	7728045	3R_7728045_SNP [dm3] 3R_11902323_SNP [dm6]	C	A	1.031e^-4	0.952	INTRON Cad87A
2R	20366332	2R_20366332_SNP [dm3] 2R_24478809_SNP [dm6]	C	A	1.032e^-4	0.952	INTRON CG13579
2L	14865403	2L_14865403_SNP [dm3] 2L_14865403_SNP [dm6]	C	A	1.037e^-4	0.952	INTERGENIC
2R	8928540	2R_8928540_SNP [dm3] 2R_13041035_SNP [dm6]	C	A	1.049e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11684101	2R_11684101_SNP [dm3] 2R_15796596_SNP [dm6]	G	C	1.051e^-4	0.952	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6305174	2R_6305174_SNP [dm3] 2R_10417669_SNP [dm6]	A	G	1.056e^-4	0.952	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	23000704	3R_23000704_DEL [dm3] 3R_27174982_DEL [dm6]	ATGAACCCCAGTTCA...	A	1.059e^-4	0.952	INTRON Ser	TF binding site mE1_TFBS_cad
2R	6677360	2R_6677360_SNP [dm3] 2R_10789855_SNP [dm6]	G	A	1.061e^-4	0.952	INTRON CG33144	TF binding site mE1_TFBS_inv
3R	1329419	3R_1329419_SNP [dm3] 3R_5503697_SNP [dm6]	A	G	1.062e^-4	0.952	UPSTREAM CG31547 INTERGENIC	TF binding site mE1_TFBS_HSA
X	8055296	X_8055296_SNP [dm3] X_8161263_SNP [dm6]	T	C	1.071e^-4	0.952	NON_SYNONYMOUS_CODING CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8555195	2R_8555195_SNP [dm3] 2R_12667690_SNP [dm6]	C	A	1.073e^-4	0.952	INTRON nemy
3R	8352983	3R_8352983_SNP [dm3] 3R_12527261_SNP [dm6]	T	A	1.073e^-4	0.952	INTRON Octbeta3R & 1 other
3R	2140173	3R_2140173_SNP [dm3] 3R_6314451_SNP [dm6]	A	G	1.074e^-4	0.952	UPSTREAM Osi17 INTRON Osi17
3R	8349787	3R_8349787_SNP [dm3] 3R_12524065_SNP [dm6]	C	A	1.078e^-4	0.952	INTRON Octbeta3R
3R	15604558	3R_15604558_SNP [dm3] 3R_19778836_SNP [dm6]	G	T	1.082e^-4	0.952	NON_SYNONYMOUS_CODING CG11391	TF binding site mE1_TFBS_sens
2R	13438202	2R_13438202_SNP [dm3] 2R_17550697_SNP [dm6]	T	C	1.084e^-4	0.952	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_sens
2R	6305169	2R_6305169_SNP [dm3] 2R_10417664_SNP [dm6]	A	G	1.097e^-4	0.952	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	19756818	2L_19756818_SNP [dm3] 2L_19756818_SNP [dm6]	A	T	1.097e^-4	0.952	UTR_5_PRIME CG10631 DOWNSTREAM CG10628
3R	16647621	3R_16647621_SNP [dm3] 3R_20821899_SNP [dm6]	C	A	1.103e^-4	0.952	UPSTREAM RpS20 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	14444066	2R_14444066_INS [dm3] 2R_18556561_INS [dm6]	T	TGT	1.110e^-4	0.952	INTRON GEFmeso
3L	9659933	3L_9659933_SNP [dm3] 3L_9666833_SNP [dm6]	C	A	1.112e^-4	0.952	INTRON fry
3R	1329415	3R_1329415_SNP [dm3] 3R_5503693_SNP [dm6]	G	C	1.120e^-4	0.952	UPSTREAM CG31547 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6801815	2R_6801815_SNP [dm3] 2R_10914310_SNP [dm6]	G	A	1.123e^-4	0.952	INTERGENIC
3R	15751626	3R_15751626_SNP [dm3] 3R_19925904_SNP [dm6]	A	T	1.130e^-4	0.952	UPSTREAM CG4462 DOWNSTREAM CG4459 INTERGENIC
2L	14261742	2L_14261742_SNP [dm3] 2L_14261742_SNP [dm6]	G	A	1.130e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	18741660	3R_18741660_SNP [dm3] 3R_22915938_SNP [dm6]	C	T	1.131e^-4	0.952	INTRON klg
3R	3393136	3R_3393136_SNP [dm3] 3R_7567414_SNP [dm6]	G	A	1.137e^-4	0.952	INTERGENIC
2R	8928543	2R_8928543_SNP [dm3] 2R_13041038_SNP [dm6]	T	C	1.137e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6396976	3L_6396976_SNP [dm3] 3L_6403876_SNP [dm6]	G	A	1.146e^-4	0.952	INTRON CG42747
3L	2884587	3L_2884587_SNP [dm3] 3L_2884587_SNP [dm6]	C	T	1.155e^-4	0.952	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12435557	2R_12435557_SNP [dm3] 2R_16548052_SNP [dm6]	A	C	1.159e^-4	0.952	INTERGENIC
2R	17489880	2R_17489880_SNP [dm3] 2R_21602375_SNP [dm6]	A	G	1.173e^-4	0.952	INTERGENIC
3L	10812214	3L_10812214_SNP [dm3] 3L_10819114_SNP [dm6]	G	T	1.188e^-4	0.952	INTERGENIC
3L	2656061	3L_2656061_SNP [dm3] 3L_2656061_SNP [dm6]	C	T	1.189e^-4	0.952	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
2R	6660111	2R_6660111_SNP [dm3] 2R_10772606_SNP [dm6]	C	T	1.207e^-4	0.952	INTRON CG33144
2L	8078176	2L_8078176_SNP [dm3] 2L_8078176_SNP [dm6]	A	G	1.216e^-4	0.952	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
3R	8083342	3R_8083342_SNP [dm3] 3R_12257620_SNP [dm6]	G	C	1.219e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	26512832	3R_26512832_SNP [dm3] 3R_30687110_SNP [dm6]	T	C	1.223e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20361643	2R_20361643_SNP [dm3] 2R_24474120_SNP [dm6]	C	A	1.224e^-4	0.952	UTR_3_PRIME CG3492 UPSTREAM CG3494 INTRON CG13579	TF binding site mE1_TFBS_HSA
2L	1691305	2L_1691305_SNP [dm3] 2L_1691305_SNP [dm6]	A	T	1.224e^-4	0.952	INTRON chinmo
3R	12183010	3R_12183010_SNP [dm3] 3R_16357288_SNP [dm6]	G	A	1.230e^-4	0.952	UPSTREAM CG10311 DOWNSTREAM CG17931 & 1 other INTERGENIC
2R	19185488	2R_19185488_SNP [dm3] 2R_23297965_SNP [dm6]	T	C	1.231e^-4	0.952	INTERGENIC
2R	8555183	2R_8555183_SNP [dm3] 2R_12667678_SNP [dm6]	C	T	1.231e^-4	0.952	INTRON nemy
X	9365936	X_9365936_SNP [dm3] X_9471903_SNP [dm6]	A	G	1.233e^-4	0.952	INTRON mgl	TF binding site mE1_TFBS_chinmo
3L	4797140	3L_4797140_SNP [dm3] 3L_4797140_SNP [dm6]	G	T	1.238e^-4	0.952	DOWNSTREAM RhoGEF64C INTERGENIC
2R	14514328	2R_14514328_SNP [dm3] 2R_18626823_SNP [dm6]	G	A	1.244e^-4	0.952	SYNONYMOUS_CODING Sec6	TF binding site mE1_TFBS_sens
2R	14514457	2R_14514457_SNP [dm3] 2R_18626952_SNP [dm6]	A	G	1.244e^-4	0.952	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site mE1_TFBS_sens
2R	14514469	2R_14514469_SNP [dm3] 2R_18626964_SNP [dm6]	T	C	1.244e^-4	0.952	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site mE1_TFBS_sens
3R	24466529	3R_24466529_SNP [dm3] 3R_28640807_SNP [dm6]	C	G	1.245e^-4	0.952	DOWNSTREAM CG14062 INTERGENIC	TF binding site mE1_TFBS_cad
3R	13229981	3R_13229981_DEL [dm3] 3R_17404259_DEL [dm6]	TAAT	T	1.251e^-4	0.952	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
3L	13500684	3L_13500684_SNP [dm3] 3L_13507584_SNP [dm6]	T	A	1.253e^-4	0.952	SYNONYMOUS_CODING Spt20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2458902	X_2458902_SNP [dm3] X_2564869_SNP [dm6]	C	A	1.254e^-4	0.952	INTRON Pdfr
3R	22983569	3R_22983569_SNP [dm3] 3R_27157847_SNP [dm6]	A	C	1.255e^-4	0.952	UPSTREAM grass DOWNSTREAM Men-b INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9161604	3L_9161604_SNP [dm3] 3L_9168504_SNP [dm6]	T	G	1.256e^-4	0.952	INTRON Rdl
3R	8352911	3R_8352911_SNP [dm3] 3R_12527189_SNP [dm6]	T	C	1.265e^-4	0.952	INTRON Octbeta3R & 1 other
3R	18384035	3R_18384035_INS [dm3] 3R_22558313_INS [dm6]	T	TT	1.267e^-4	0.952	DOWNSTREAM CG5278 INTERGENIC
X	19257004	X_19257004_SNP [dm3] X_19362971_SNP [dm6]	T	C	1.272e^-4	0.952	UTR_5_PRIME kek5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8242525	3R_8242525_SNP [dm3] 3R_12416803_SNP [dm6]	C	T	1.274e^-4	0.952	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21889969	3R_21889969_SNP [dm3] 3R_26064247_SNP [dm6]	T	C	1.283e^-4	0.952	INTERGENIC
3R	25794895	3R_25794895_SNP [dm3] 3R_29969173_SNP [dm6]	C	A	1.283e^-4	0.952	START_GAINED TkR99D UTR_5_PRIME TkR99D
3R	15466755	3R_15466755_SNP [dm3] 3R_19641033_SNP [dm6]	C	T	1.290e^-4	0.952	UTR_5_PRIME subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20358977	2R_20358977_SNP [dm3] 2R_24471454_SNP [dm6]	T	C	1.292e^-4	0.952	INTRON CG13579
3L	740760	3L_740760_SNP [dm3] 3L_740760_SNP [dm6]	A	G	1.307e^-4	0.952	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
X	2757730	X_2757730_SNP [dm3] X_2863697_SNP [dm6]	T	A	1.310e^-4	0.952	INTRON kirre
2L	17308401	2L_17308401_SNP [dm3] 2L_17308401_SNP [dm6]	C	T	1.316e^-4	0.952	INTERGENIC
2L	8362750	2L_8362750_SNP [dm3] 2L_8362750_SNP [dm6]	T	C	1.320e^-4	0.952	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	23055311	3R_23055311_SNP [dm3] 3R_27229589_SNP [dm6]	A	G	1.325e^-4	0.952	UTR_3_PRIME CG31064 UPSTREAM CG42814	TF binding site mE1_TFBS_chinmo
3R	25797946	3R_25797946_SNP [dm3] 3R_29972224_SNP [dm6]	G	T	1.346e^-4	0.952	INTERGENIC
2R	16114634	2R_16114634_SNP [dm3] 2R_20227129_SNP [dm6]	A	T	1.354e^-4	0.952	INTERGENIC
2R	14630975	2R_14630975_SNP [dm3] 2R_18743470_SNP [dm6]	G	A	1.363e^-4	0.952	NON_SYNONYMOUS_CODING CG18609 DOWNSTREAM CG17821 INTRON Hs3st-A	TF binding site mE1_TFBS_HSA
2L	9982118	2L_9982118_SNP [dm3] 2L_9982118_SNP [dm6]	A	G	1.366e^-4	0.952	INTERGENIC
2R	12559104	2R_12559104_SNP [dm3] 2R_16671599_SNP [dm6]	A	C	1.377e^-4	0.952	UTR_3_PRIME CG34457 UPSTREAM CG34458
3L	6396128	3L_6396128_SNP [dm3] 3L_6403028_SNP [dm6]	G	A	1.389e^-4	0.952	INTRON CG42747
2R	13438004	2R_13438004_SNP [dm3] 2R_17550499_SNP [dm6]	T	C	1.389e^-4	0.952	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_sens
2L	15051741	2L_15051741_SNP [dm3] 2L_15051741_SNP [dm6]	C	A	1.391e^-4	0.952	INTRON ck	regulatory region REDfly_CRMs
3R	24518302	3R_24518302_SNP [dm3] 3R_28692580_SNP [dm6]	G	T	1.396e^-4	0.952	SYNONYMOUS_CODING CG9990	TF binding site mE1_TFBS_cad
X	10982451	X_10982451_SNP [dm3] X_11088418_SNP [dm6]	A	C	1.398e^-4	0.952	UPSTREAM Vago DOWNSTREAM CR45604 INTERGENIC
X	13236936	X_13236936_SNP [dm3] X_13342903_SNP [dm6]	G	A	1.402e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6801285	2R_6801285_DEL [dm3] 2R_10913780_DEL [dm6]	CAGAGTGT	C	1.413e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14553001	3L_14553001_SNP [dm3] 3L_14559901_SNP [dm6]	A	C	1.417e^-4	0.952	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	421626	3L_421626_SNP [dm3] 3L_421626_SNP [dm6]	T	C	1.425e^-4	0.952	INTERGENIC
2R	13001518	2R_13001518_SNP [dm3] 2R_17114013_SNP [dm6]	A	G	1.425e^-4	0.952	SYNONYMOUS_CODING CG15611	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2776414	3R_2776414_SNP [dm3] 3R_6950692_SNP [dm6]	G	A	1.427e^-4	0.952	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18023596	2R_18023596_DEL [dm3] 2R_22136091_DEL [dm6]	TATCTTTGATGCGC...	T	1.434e^-4	0.952	UPSTREAM a INTERGENIC
X	10538189	X_10538189_SNP [dm3] X_10644156_SNP [dm6]	T	G	1.443e^-4	0.952	INTRON X11Lbeta
2R	9148596	2R_9148596_SNP [dm3] 2R_13261091_SNP [dm6]	A	G	1.449e^-4	0.952	INTRON CG42319
X	19427946	X_19427946_SNP [dm3] X_19533913_SNP [dm6]	G	A	1.452e^-4	0.952	INTRON CG32532	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3403110	2L_3403110_SNP [dm3] 2L_3403110_SNP [dm6]	G	A	1.456e^-4	0.952	INTERGENIC
3L	4806053	3L_4806053_SNP [dm3] 3L_4806053_SNP [dm6]	G	T	1.459e^-4	0.952	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	12469308	3R_12469308_SNP [dm3] 3R_16643586_SNP [dm6]	A	C	1.465e^-4	0.952	UPSTREAM CG10326 DOWNSTREAM nonA-l INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	4891076	2L_4891076_SNP [dm3] 2L_4891076_SNP [dm6]	T	C	1.466e^-4	0.952	SYNONYMOUS_CODING CG15625 DOWNSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13977559	X_13977559_SNP [dm3] X_14083526_SNP [dm6]	T	A	1.466e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	8234936	3R_8234936_SNP [dm3] 3R_12409214_SNP [dm6]	A	G	1.472e^-4	0.952	UTR_5_PRIME CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7889248	2L_7889248_DEL [dm3] 2L_7889248_DEL [dm6]	AA	A	1.481e^-4	0.952	UPSTREAM Spn28Da DOWNSTREAM Spn28Db INTERGENIC
2L	3210619	2L_3210619_SNP [dm3] 2L_3210619_SNP [dm6]	A	T	1.484e^-4	0.952	EXON CR45336
2L	6538674	2L_6538674_SNP [dm3] 2L_6538674_SNP [dm6]	T	G	1.505e^-4	0.952	INTRON eya
3R	6286293	3R_6286293_SNP [dm3] 3R_10460571_SNP [dm6]	G	T	1.513e^-4	0.952	UPSTREAM CR44939 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3169107	X_3169107_SNP [dm3] X_3275074_SNP [dm6]	G	A	1.523e^-4	0.952	INTRON dnc
2L	3396588	2L_3396588_SNP [dm3] 2L_3396588_SNP [dm6]	G	A	1.529e^-4	0.952	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7728056	3R_7728056_DEL [dm3] 3R_11902334_DEL [dm6]	TT	T	1.544e^-4	0.952	INTRON Cad87A
2L	8078188	2L_8078188_SNP [dm3] 2L_8078188_SNP [dm6]	T	C	1.545e^-4	0.952	SYNONYMOUS_CODING Mcr
3R	17916325	3R_17916325_SNP [dm3] 3R_22090603_SNP [dm6]	G	T	1.547e^-4	0.952	INTRON CG5778
3L	6570959	3L_6570959_SNP [dm3] 3L_6577859_SNP [dm6]	G	C	1.549e^-4	0.952	INTRON CG18769 & 1 other
2L	14323316	2L_14323316_SNP [dm3] 2L_14323316_SNP [dm6]	C	G	1.554e^-4	0.952	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16012561	X_16012561_SNP [dm3] X_16118528_SNP [dm6]	G	A	1.560e^-4	0.952	UTR_3_PRIME disco-r DOWNSTREAM disco-r
3R	26050488	3R_26050488_SNP [dm3] 3R_30224766_SNP [dm6]	G	A	1.597e^-4	0.952	INTERGENIC
3L	754261	3L_754261_SNP [dm3] 3L_754261_SNP [dm6]	G	T	1.598e^-4	0.952	DOWNSTREAM emc INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14455777	X_14455777_SNP [dm3] X_14561744_SNP [dm6]	A	G	1.599e^-4	0.952	INTERGENIC
2R	12855205	2R_12855205_INS [dm3] 2R_16967700_INS [dm6]	A	AA	1.606e^-4	0.952	UPSTREAM tRNA:G3:53E INTERGENIC
2L	15749316	2L_15749316_SNP [dm3] 2L_15749316_SNP [dm6]	A	T	1.609e^-4	0.952	DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2R	6801279	2R_6801279_SNP [dm3] 2R_10913774_SNP [dm6]	A	G	1.612e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23620849	3R_23620849_SNP [dm3] 3R_27795127_SNP [dm6]	G	A	1.626e^-4	0.952	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9659835	3L_9659835_SNP [dm3] 3L_9666735_SNP [dm6]	T	C	1.626e^-4	0.952	INTRON fry
2L	3828318	2L_3828318_DEL [dm3] 2L_3828318_DEL [dm6]	CC	C	1.628e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18705662	3R_18705662_SNP [dm3] 3R_22879940_SNP [dm6]	A	G	1.632e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16205956	3L_16205956_SNP [dm3] 3L_16212856_SNP [dm6]	A	G	1.633e^-4	0.952	DOWNSTREAM CG13073 INTERGENIC	TF binding site mE1_TFBS_Stat92E
3L	1376291	3L_1376291_SNP [dm3] 3L_1376291_SNP [dm6]	C	T	1.635e^-4	0.952	INTRON Ptp61F & 1 other
3R	8083272	3R_8083272_SNP [dm3] 3R_12257550_SNP [dm6]	C	T	1.638e^-4	0.952	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12561408	3L_12561408_SNP [dm3] 3L_12568308_SNP [dm6]	A	G	1.642e^-4	0.952	INTRON sowah
3R	21889973	3R_21889973_SNP [dm3] 3R_26064251_SNP [dm6]	C	T	1.646e^-4	0.952	INTERGENIC
3L	11385965	3L_11385965_SNP [dm3] 3L_11392865_SNP [dm6]	A	G	1.656e^-4	0.952	INTERGENIC
X	14236500	X_14236500_SNP [dm3] X_14342467_SNP [dm6]	A	T	1.657e^-4	0.952	INTRON dpr8
3R	25430417	3R_25430417_SNP [dm3] 3R_29604695_SNP [dm6]	G	A	1.658e^-4	0.952	INTRON alph
2R	14514526	2R_14514526_SNP [dm3] 2R_18627021_SNP [dm6]	A	C	1.662e^-4	0.952	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site mE1_TFBS_sens
3R	8286850	3R_8286850_SNP [dm3] 3R_12461128_SNP [dm6]	G	A	1.664e^-4	0.952	SYNONYMOUS_CODING CG12267 UPSTREAM CG5961	TF binding site mE1_TFBS_inv
X	3239226	X_3239226_SNP [dm3] X_3345193_SNP [dm6]	A	T	1.673e^-4	0.952	INTRON CR44886	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18608372	2R_18608372_SNP [dm3] 2R_22720867_SNP [dm6]	G	A	1.676e^-4	0.952	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6305127	2R_6305127_SNP [dm3] 2R_10417622_SNP [dm6]	G	A	1.684e^-4	0.952	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	8826108	X_8826108_SNP [dm3] X_8932075_SNP [dm6]	A	G	1.687e^-4	0.952	INTRON rdgA
3R	25429917	3R_25429917_SNP [dm3] 3R_29604195_SNP [dm6]	T	G	1.694e^-4	0.952	INTRON alph
3L	15244090	3L_15244090_DEL [dm3] 3L_15250990_DEL [dm6]	GTTTATGTTG	G	1.695e^-4	0.952	INTERGENIC
3R	15466208	3R_15466208_SNP [dm3] 3R_19640486_SNP [dm6]	A	T	1.700e^-4	0.952	INTRON subdued
2L	15749372	2L_15749372_SNP [dm3] 2L_15749372_SNP [dm6]	A	G	1.704e^-4	0.952	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
3R	17908575	3R_17908575_SNP [dm3] 3R_22082853_SNP [dm6]	C	G	1.705e^-4	0.952	INTRON CG13408
3L	4806057	3L_4806057_SNP [dm3] 3L_4806057_SNP [dm6]	T	C	1.706e^-4	0.952	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4806059	3L_4806059_SNP [dm3] 3L_4806059_SNP [dm6]	A	G	1.706e^-4	0.952	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16009717	2L_16009717_SNP [dm3] 2L_16009717_SNP [dm6]	A	T	1.708e^-4	0.952	INTRON beat-Ic
2R	18023727	2R_18023727_INS [dm3] 2R_22136222_INS [dm6]	T	TATAT	1.721e^-4	0.952	UPSTREAM a INTERGENIC
2R	6305158	2R_6305158_SNP [dm3] 2R_10417653_SNP [dm6]	C	T	1.727e^-4	0.952	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	4797108	3L_4797108_SNP [dm3] 3L_4797108_SNP [dm6]	T	C	1.732e^-4	0.952	DOWNSTREAM RhoGEF64C INTERGENIC
2R	16014300	2R_16014300_SNP [dm3] 2R_20126795_SNP [dm6]	T	A	1.734e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	2876674	3R_2876674_SNP [dm3] 3R_7050952_SNP [dm6]	A	G	1.749e^-4	0.952	INTERGENIC
3L	13500747	3L_13500747_SNP [dm3] 3L_13507647_SNP [dm6]	C	G	1.766e^-4	0.952	SYNONYMOUS_CODING Spt20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9998836	X_9998836_SNP [dm3] X_10104803_SNP [dm6]	A	T	1.773e^-4	0.952	INTRON RhoU
3R	14541261	3R_14541261_DEL [dm3] 3R_18715539_DEL [dm6]	TC	T	1.776e^-4	0.952	UTR_3_PRIME VAChT INTRON Cha
3L	13165349	3L_13165349_SNP [dm3] 3L_13172249_SNP [dm6]	C	T	1.788e^-4	0.952	INTERGENIC
3R	16522258	3R_16522258_SNP [dm3] 3R_20696536_SNP [dm6]	T	A	1.790e^-4	0.952	INTRON Oamb
2R	19959429	2R_19959429_SNP [dm3] 2R_24071906_SNP [dm6]	C	T	1.795e^-4	0.952	INTRON CG3209
3L	13326311	3L_13326311_MNP [dm3] 3L_13333211_MNP [dm6]	TTG	AAA	1.795e^-4	0.952	INTERGENIC
3L	13326317	3L_13326317_SNP [dm3] 3L_13333217_SNP [dm6]	T	A	1.795e^-4	0.952	INTERGENIC
2R	9122787	2R_9122787_SNP [dm3] 2R_13235282_SNP [dm6]	A	T	1.796e^-4	0.952	UTR_5_PRIME CG4670 UPSTREAM CG4676 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13578773	2R_13578773_SNP [dm3] 2R_17691268_SNP [dm6]	G	A	1.796e^-4	0.952	SYNONYMOUS_CODING swi2 DOWNSTREAM HPS4	TF binding site mE1_TFBS_cad
3R	9795991	3R_9795991_SNP [dm3] 3R_13970269_SNP [dm6]	C	A	1.802e^-4	0.952	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3L	13326315	3L_13326315_SNP [dm3] 3L_13333215_SNP [dm6]	T	A	1.808e^-4	0.952	INTERGENIC
X	3070963	X_3070963_DEL [dm3] X_3176930_DEL [dm6]	AA	A	1.812e^-4	0.952	DOWNSTREAM CG3939 INTRON dnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	23363369	3R_23363369_SNP [dm3] 3R_27537647_SNP [dm6]	A	G	1.821e^-4	0.952	UPSTREAM CR44288 EXON CR44289
3L	15846662	3L_15846662_SNP [dm3] 3L_15853562_SNP [dm6]	T	C	1.823e^-4	0.952	INTRON pHCl	TF binding site mE1_TFBS_kn
2L	7766626	2L_7766626_SNP [dm3] 2L_7766626_SNP [dm6]	G	A	1.826e^-4	0.952	DOWNSTREAM CG7196 INTERGENIC
X	9753967	X_9753967_SNP [dm3] X_9859934_SNP [dm6]	G	C	1.831e^-4	0.952	INTERGENIC
3R	25426270	3R_25426270_SNP [dm3] 3R_29600548_SNP [dm6]	A	T	1.838e^-4	0.952	NON_SYNONYMOUS_CODING CG7568 INTRON alph	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20334942	X_20334942_SNP [dm3] X_20463915_SNP [dm6]	G	A	1.845e^-4	0.952	NON_SYNONYMOUS_CODING CG32506	TF binding site mE1_TFBS_chinmo
2L	4631806	2L_4631806_SNP [dm3] 2L_4631806_SNP [dm6]	G	A	1.846e^-4	0.952	INTERGENIC
3R	25064115	3R_25064115_SNP [dm3] 3R_29238393_SNP [dm6]	C	T	1.846e^-4	0.952	DOWNSTREAM CG31427 INTRON CG11951
3R	26505060	3R_26505060_SNP [dm3] 3R_30679338_SNP [dm6]	G	C	1.853e^-4	0.952	INTERGENIC
3R	15592989	3R_15592989_INS [dm3] 3R_19767267_INS [dm6]	A	ATCCTGGCACCCTGGCA...	1.855e^-4	0.952	INTRON GluClalpha
3R	17903195	3R_17903195_SNP [dm3] 3R_22077473_SNP [dm6]	T	C	1.858e^-4	0.952	UTR_3_PRIME how
3R	23000281	3R_23000281_SNP [dm3] 3R_27174559_SNP [dm6]	A	T	1.859e^-4	0.952	SPLICE_SITE_REGION Ser INTRON Ser	TF binding site mE1_TFBS_cad
2R	11471261	2R_11471261_SNP [dm3] 2R_15583756_SNP [dm6]	G	A	1.860e^-4	0.952	INTERGENIC
2L	15352577	2L_15352577_SNP [dm3] 2L_15352577_SNP [dm6]	G	A	1.864e^-4	0.952	INTERGENIC
2R	16848078	2R_16848078_SNP [dm3] 2R_20960573_SNP [dm6]	C	T	1.879e^-4	0.952	SYNONYMOUS_CODING hbn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10699807	2L_10699807_SNP [dm3] 2L_10699807_SNP [dm6]	G	A	1.901e^-4	0.952	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad
2R	6305125	2R_6305125_SNP [dm3] 2R_10417620_SNP [dm6]	A	G	1.903e^-4	0.952	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	2169004	3R_2169004_SNP [dm3] 3R_6343282_SNP [dm6]	A	G	1.917e^-4	0.952	NON_SYNONYMOUS_CODING CG10298 UPSTREAM CG17919 DOWNSTREAM CG17917
2R	6801147	2R_6801147_SNP [dm3] 2R_10913642_SNP [dm6]	T	A	1.923e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	2312098	3R_2312098_SNP [dm3] 3R_6486376_SNP [dm6]	C	T	1.933e^-4	0.952	UPSTREAM CG15186 INTRON CG15186
3L	421618	3L_421618_SNP [dm3] 3L_421618_SNP [dm6]	T	G	1.943e^-4	0.952	INTERGENIC
3R	15636850	3R_15636850_SNP [dm3] 3R_19811128_SNP [dm6]	A	G	1.949e^-4	0.952	INTRON bnl
3R	25789950	3R_25789950_SNP [dm3] 3R_29964228_SNP [dm6]	T	C	1.952e^-4	0.952	INTRON TkR99D
3R	25848192	3R_25848192_SNP [dm3] 3R_30022470_SNP [dm6]	T	A	1.963e^-4	0.952	SYNONYMOUS_CODING RpS28a UPSTREAM Axn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16408692	2L_16408692_SNP [dm3] 2L_16408692_SNP [dm6]	G	T	1.971e^-4	0.952	INTRON CG5888
2R	16014346	2R_16014346_SNP [dm3] 2R_20126841_SNP [dm6]	C	T	1.971e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19214550	3R_19214550_SNP [dm3] 3R_23388828_SNP [dm6]	A	G	1.975e^-4	0.952	NON_SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6396438	3L_6396438_SNP [dm3] 3L_6403338_SNP [dm6]	G	C	1.982e^-4	0.952	INTRON CG42747
3L	6396433	3L_6396433_SNP [dm3] 3L_6403333_SNP [dm6]	C	T	1.997e^-4	0.952	INTRON CG42747
2L	16009854	2L_16009854_SNP [dm3] 2L_16009854_SNP [dm6]	T	G	2.008e^-4	0.952	INTRON beat-Ic
X	3169069	X_3169069_SNP [dm3] X_3275036_SNP [dm6]	A	G	2.016e^-4	0.952	INTRON dnc
2L	7761707	2L_7761707_SNP [dm3] 2L_7761707_SNP [dm6]	A	G	2.016e^-4	0.952	INTRON CG7196
X	17025893	X_17025893_SNP [dm3] X_17131860_SNP [dm6]	A	T	2.024e^-4	0.952	INTRON CG5004
3L	4797713	3L_4797713_SNP [dm3] 3L_4797713_SNP [dm6]	C	G	2.026e^-4	0.952	INTERGENIC
2L	14261781	2L_14261781_SNP [dm3] 2L_14261781_SNP [dm6]	C	T	2.040e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	19453811	X_19453811_SNP [dm3] X_19559778_SNP [dm6]	C	A	2.041e^-4	0.952	UTR_3_PRIME Grip84 DOWNSTREAM mir-975 & 2 others
3R	16647464	3R_16647464_SNP [dm3] 3R_20821742_SNP [dm6]	C	A	2.042e^-4	0.952	UTR_5_PRIME CG17271 UPSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	967956	3L_967956_SNP [dm3] 3L_967956_SNP [dm6]	A	C	2.048e^-4	0.952	INTRON Glut1
3R	23363198	3R_23363198_SNP [dm3] 3R_27537476_SNP [dm6]	G	C	2.048e^-4	0.952	UPSTREAM CR44288 EXON CR44289
X	7531364	X_7531364_SNP [dm3] X_7637331_SNP [dm6]	G	T	2.057e^-4	0.952	INTRON ct
2L	12982300	2L_12982300_SNP [dm3] 2L_12982300_SNP [dm6]	A	T	2.061e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10102995	2L_10102995_SNP [dm3] 2L_10102995_SNP [dm6]	T	C	2.073e^-4	0.952	INTRON CG44153 & 1 other
3L	2655990	3L_2655990_SNP [dm3] 3L_2655990_SNP [dm6]	A	G	2.082e^-4	0.952	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3L	2656035	3L_2656035_SNP [dm3] 3L_2656035_SNP [dm6]	A	G	2.082e^-4	0.952	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3R	16863695	3R_16863695_SNP [dm3] 3R_21037973_SNP [dm6]	G	A	2.084e^-4	0.952	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	6544732	X_6544732_SNP [dm3] X_6650699_SNP [dm6]	A	G	2.086e^-4	0.952	UTR_3_PRIME pigs	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15082273	3L_15082273_SNP [dm3] 3L_15089173_SNP [dm6]	T	A	2.094e^-4	0.952	UPSTREAM cp309 INTRON cp309
3L	16205716	3L_16205716_SNP [dm3] 3L_16212616_SNP [dm6]	A	C	2.095e^-4	0.952	DOWNSTREAM CG13073 INTERGENIC
2R	8488375	2R_8488375_SNP [dm3] 2R_12600870_SNP [dm6]	A	G	2.095e^-4	0.952	INTRON Amph
2R	13863482	2R_13863482_SNP [dm3] 2R_17975977_SNP [dm6]	T	A	2.097e^-4	0.952	UTR_3_PRIME dpr13
3L	6590360	3L_6590360_SNP [dm3] 3L_6597260_SNP [dm6]	T	G	2.103e^-4	0.952	NON_SYNONYMOUS_CODING ndl
2R	8555117	2R_8555117_SNP [dm3] 2R_12667612_SNP [dm6]	G	C	2.103e^-4	0.952	INTRON nemy
3R	20006816	3R_20006816_SNP [dm3] 3R_24181094_SNP [dm6]	A	C	2.108e^-4	0.952	UTR_3_PRIME CG13606 INTRON CG13606
3L	5332968	3L_5332968_SNP [dm3] 3L_5339868_SNP [dm6]	A	T	2.116e^-4	0.952	INTERGENIC
2R	5272359	2R_5272359_SNP [dm3] 2R_9384854_SNP [dm6]	C	T	2.116e^-4	0.952	INTRON CG13954
3R	1522339	3R_1522339_SNP [dm3] 3R_5696617_SNP [dm6]	A	G	2.118e^-4	0.952	INTRON plx	TF binding site mE1_TFBS_cad
3R	25193260	3R_25193260_SNP [dm3] 3R_29367538_SNP [dm6]	A	T	2.123e^-4	0.952	INTERGENIC
3L	19769758	3L_19769758_INS [dm3] 3L_19776658_INS [dm6]	T	TC	2.131e^-4	0.952	INTRON CG42637 & 1 other
3R	12461763	3R_12461763_SNP [dm3] 3R_16636041_SNP [dm6]	T	G	2.135e^-4	0.952	SYNONYMOUS_CODING Fas1
3L	17440456	3L_17440456_SNP [dm3] 3L_17447356_SNP [dm6]	G	A	2.136e^-4	0.952	INTRON CG18265
2L	15051967	2L_15051967_SNP [dm3] 2L_15051967_SNP [dm6]	G	A	2.137e^-4	0.952	SYNONYMOUS_CODING ck	regulatory region REDfly_CRMs
2R	13343267	2R_13343267_SNP [dm3] 2R_17455762_SNP [dm6]	A	C	2.139e^-4	0.952	UTR_3_PRIME robls54B UPSTREAM robl DOWNSTREAM CG10764
2R	18527421	2R_18527421_SNP [dm3] 2R_22639916_SNP [dm6]	T	A	2.146e^-4	0.952	DOWNSTREAM RpS24 INTRON CG3732	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9659952	3L_9659952_MNP [dm3] 3L_9666852_MNP [dm6]	GTA	AGG	2.149e^-4	0.952	INTRON fry
2L	15078885	2L_15078885_INS [dm3] 2L_15078885_INS [dm6]	T	TCAGC	2.152e^-4	0.952	INTRON CG15270	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1392582	3R_1392582_SNP [dm3] 3R_5566860_SNP [dm6]	G	A	2.158e^-4	0.952	SYNONYMOUS_CODING CG12746 DOWNSTREAM CG2931	TF binding site mE1_TFBS_chinmo
X	17025894	X_17025894_SNP [dm3] X_17131861_SNP [dm6]	C	G	2.167e^-4	0.952	INTRON CG5004
2L	7298130	2L_7298130_SNP [dm3] 2L_7298130_SNP [dm6]	G	T	2.170e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	13042287	3L_13042287_SNP [dm3] 3L_13049187_SNP [dm6]	A	T	2.175e^-4	0.952	DOWNSTREAM CG11279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23512640	3R_23512640_MNP [dm3] 3R_27686918_MNP [dm6]	TCCG	CTTT	2.177e^-4	0.952	INTRON CG12880 & 1 other	TF binding site mE1_TFBS_chinmo
3L	658412	3L_658412_SNP [dm3] 3L_658412_SNP [dm6]	A	G	2.178e^-4	0.952	DOWNSTREAM Rev1 INTERGENIC
3L	6490804	3L_6490804_SNP [dm3] 3L_6497704_SNP [dm6]	C	T	2.187e^-4	0.952	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17476771	3L_17476771_SNP [dm3] 3L_17483671_SNP [dm6]	A	G	2.191e^-4	0.952	INTRON CG6333
2R	13649417	2R_13649417_SNP [dm3] 2R_17761912_SNP [dm6]	A	G	2.199e^-4	0.952	INTRON CG5009
2R	20366347	2R_20366347_SNP [dm3] 2R_24478824_SNP [dm6]	A	T	2.203e^-4	0.952	INTRON CG13579
X	13977711	X_13977711_SNP [dm3] X_14083678_SNP [dm6]	C	T	2.204e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16013113	2R_16013113_SNP [dm3] 2R_20125608_SNP [dm6]	G	C	2.206e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_inv
3R	23363231	3R_23363231_SNP [dm3] 3R_27537509_SNP [dm6]	A	T	2.206e^-4	0.952	UPSTREAM CR44288 EXON CR44289
3L	18150043	3L_18150043_INS [dm3] 3L_18156943_INS [dm6]	A	ATGTA	2.211e^-4	0.952	INTRON CG13699
2R	14514637	2R_14514637_SNP [dm3] 2R_18627132_SNP [dm6]	G	A	2.217e^-4	0.952	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site mE1_TFBS_sens
3L	17181050	3L_17181050_SNP [dm3] 3L_17187950_SNP [dm6]	G	A	2.219e^-4	0.952	INTRON Rbp6
2R	6736954	2R_6736954_SNP [dm3] 2R_10849449_SNP [dm6]	A	C	2.222e^-4	0.952	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
3R	23007850	3R_23007850_SNP [dm3] 3R_27182128_SNP [dm6]	C	A	2.223e^-4	0.952	INTRON Ser
2R	5235381	2R_5235381_SNP [dm3] 2R_9347876_SNP [dm6]	G	C	2.226e^-4	0.952	UTR_3_PRIME Or45a INTRON CG13954 & 1 other
3L	5510321	3L_5510321_INS [dm3] 3L_5517221_INS [dm6]	T	TT	2.227e^-4	0.952	INTRON Lkr
3L	13326320	3L_13326320_DEL [dm3] 3L_13333220_DEL [dm6]	TACCTCGCCT	T	2.230e^-4	0.952	INTERGENIC
3L	6396442	3L_6396442_SNP [dm3] 3L_6403342_SNP [dm6]	T	C	2.240e^-4	0.952	INTRON CG42747
3R	1939841	3R_1939841_SNP [dm3] 3R_6114119_SNP [dm6]	C	T	2.244e^-4	0.952	INTERGENIC
3L	571513	3L_571513_SNP [dm3] 3L_571513_SNP [dm6]	C	A	2.249e^-4	0.952	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15749405	2L_15749405_SNP [dm3] 2L_15749405_SNP [dm6]	C	T	2.253e^-4	0.952	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
2R	17163223	2R_17163223_SNP [dm3] 2R_21275718_SNP [dm6]	C	T	2.253e^-4	0.952	INTRON Rgk3
2L	1274837	2L_1274837_SNP [dm3] 2L_1274837_SNP [dm6]	A	G	2.267e^-4	0.952	INTRON robo3
3L	12561413	3L_12561413_SNP [dm3] 3L_12568313_SNP [dm6]	A	T	2.271e^-4	0.952	INTRON sowah
3L	13326319	3L_13326319_SNP [dm3] 3L_13333219_SNP [dm6]	A	G	2.275e^-4	0.952	INTERGENIC
2L	2629944	2L_2629944_SNP [dm3] 2L_2629944_SNP [dm6]	C	T	2.295e^-4	0.952	INTERGENIC
3L	15754559	3L_15754559_SNP [dm3] 3L_15761459_SNP [dm6]	A	G	2.297e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13641865	2R_13641865_SNP [dm3] 2R_17754360_SNP [dm6]	C	T	2.315e^-4	0.952	NON_SYNONYMOUS_CODING CG6385	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8217231	3R_8217231_SNP [dm3] 3R_12391509_SNP [dm6]	C	T	2.321e^-4	0.952	SYNONYMOUS_CODING CG10096 UTR_3_PRIME CG10097 INTRON CG34402
2L	5684723	2L_5684723_DEL [dm3] 2L_5684723_DEL [dm6]	CGC	C	2.326e^-4	0.952	INTERGENIC
3R	25791712	3R_25791712_SNP [dm3] 3R_29965990_SNP [dm6]	G	T	2.334e^-4	0.952	INTRON TkR99D
3L	2707943	3L_2707943_INS [dm3] 3L_2707943_INS [dm6]	C	CAT	2.340e^-4	0.952	INTRON Fife
2L	4996938	2L_4996938_SNP [dm3] 2L_4996938_SNP [dm6]	C	A	2.342e^-4	0.952	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
X	11816530	X_11816530_DEL [dm3] X_11922497_DEL [dm6]	AATC	A	2.342e^-4	0.952	INTRON Sclp
3L	7087049	3L_7087049_SNP [dm3] 3L_7093949_SNP [dm6]	T	G	2.358e^-4	0.952	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26513654	3R_26513654_SNP [dm3] 3R_30687932_SNP [dm6]	C	T	2.361e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9410635	3L_9410635_SNP [dm3] 3L_9417535_SNP [dm6]	C	G	2.366e^-4	0.952	UPSTREAM CG3982 INTRON CG3967
X	10978735	X_10978735_DEL [dm3] X_11084702_DEL [dm6]	AGTTTTGT	A	2.367e^-4	0.952	INTRON sev
3L	13500729	3L_13500729_SNP [dm3] 3L_13507629_SNP [dm6]	A	C	2.385e^-4	0.952	SYNONYMOUS_CODING Spt20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13326306	3L_13326306_SNP [dm3] 3L_13333206_SNP [dm6]	A	C	2.386e^-4	0.952	INTERGENIC
2L	15889836	2L_15889836_SNP [dm3] 2L_15889836_SNP [dm6]	A	G	2.386e^-4	0.952	INTRON Tep1	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	15539826	3R_15539826_SNP [dm3] 3R_19714104_SNP [dm6]	C	T	2.388e^-4	0.952	INTERGENIC
X	3265573	X_3265573_SNP [dm3] X_3371540_SNP [dm6]	A	C	2.389e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15684926	3L_15684926_SNP [dm3] 3L_15691826_SNP [dm6]	G	A	2.389e^-4	0.952	SYNONYMOUS_CODING CG34451 UTR_5_PRIME CG34451	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2L	15749361	2L_15749361_SNP [dm3] 2L_15749361_SNP [dm6]	T	C	2.389e^-4	0.952	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
2R	7121591	2R_7121591_SNP [dm3] 2R_11234086_SNP [dm6]	G	A	2.396e^-4	0.952	SYNONYMOUS_CODING CG13228 UPSTREAM CG13218
2R	6305287	2R_6305287_SNP [dm3] 2R_10417782_SNP [dm6]	T	A	2.398e^-4	0.952	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19185489	2R_19185489_SNP [dm3] 2R_23297966_SNP [dm6]	T	C	2.399e^-4	0.952	INTERGENIC
2L	2629915	2L_2629915_SNP [dm3] 2L_2629915_SNP [dm6]	G	A	2.414e^-4	0.952	INTERGENIC
3L	7611382	3L_7611382_SNP [dm3] 3L_7618282_SNP [dm6]	A	G	2.420e^-4	0.952	INTRON CG33275
2L	2513835	2L_2513835_SNP [dm3] 2L_2513835_SNP [dm6]	A	T	2.420e^-4	0.952	INTERGENIC
2L	10496267	2L_10496267_SNP [dm3] 2L_10496267_SNP [dm6]	G	A	2.427e^-4	0.952	INTRON Myo31DF
2R	6305286	2R_6305286_SNP [dm3] 2R_10417781_SNP [dm6]	C	T	2.428e^-4	0.952	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16231471	2R_16231471_SNP [dm3] 2R_20343966_SNP [dm6]	A	G	2.429e^-4	0.952	SYNONYMOUS_CODING CG13870	TF binding site mE1_TFBS_inv
2R	17162519	2R_17162519_SNP [dm3] 2R_21275014_SNP [dm6]	C	A	2.452e^-4	0.952	INTRON Rgk3
2L	14495973	2L_14495973_SNP [dm3] 2L_14495973_SNP [dm6]	A	C	2.453e^-4	0.952	DOWNSTREAM tRNA:P:35Bd INTERGENIC
3R	9654654	3R_9654654_SNP [dm3] 3R_13828932_SNP [dm6]	T	A	2.457e^-4	0.952	UPSTREAM Mst87F DOWNSTREAM CR43300 INTERGENIC
3L	12561426	3L_12561426_SNP [dm3] 3L_12568326_SNP [dm6]	T	G	2.466e^-4	0.952	INTRON sowah
3L	14975116	3L_14975116_SNP [dm3] 3L_14982016_SNP [dm6]	T	A	2.476e^-4	0.952	SYNONYMOUS_CODING CG3349 UPSTREAM CG5114
3R	24610882	3R_24610882_SNP [dm3] 3R_28785160_SNP [dm6]	C	A	2.482e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25792656	3R_25792656_SNP [dm3] 3R_29966934_SNP [dm6]	G	A	2.490e^-4	0.952	INTRON TkR99D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14192978	2R_14192978_SNP [dm3] 2R_18305473_SNP [dm6]	G	T	2.511e^-4	0.952	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	14237975	X_14237975_SNP [dm3] X_14343942_SNP [dm6]	T	C	2.530e^-4	0.952	INTRON dpr8
2L	3754503	2L_3754503_SNP [dm3] 2L_3754503_SNP [dm6]	G	A	2.534e^-4	0.952	UTR_3_PRIME CG10019
3R	25607206	3R_25607206_SNP [dm3] 3R_29781484_SNP [dm6]	G	C	2.535e^-4	0.952	INTRON kay
2L	7045284	2L_7045284_SNP [dm3] 2L_7045284_SNP [dm6]	C	G	2.538e^-4	0.952	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9476418	X_9476418_SNP [dm3] X_9582385_SNP [dm6]	C	G	2.538e^-4	0.952	UPSTREAM CR45540 INTERGENIC
3L	1444499	3L_1444499_SNP [dm3] 3L_1444499_SNP [dm6]	T	G	2.540e^-4	0.952	INTRON Ptp61F
X	19389695	X_19389695_SNP [dm3] X_19495662_SNP [dm6]	G	C	2.544e^-4	0.952	UTR_5_PRIME CG14200 UPSTREAM ksh INTRON Pfrx EXON CR44340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	9497218	3L_9497218_SNP [dm3] 3L_9504118_SNP [dm6]	A	G	2.550e^-4	0.952	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5971153	X_5971153_SNP [dm3] X_6077120_SNP [dm6]	A	T	2.551e^-4	0.952	INTRON CG4666
3L	14975552	3L_14975552_SNP [dm3] 3L_14982452_SNP [dm6]	T	C	2.557e^-4	0.952	UPSTREAM CG5114 DOWNSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15660459	2R_15660459_SNP [dm3] 2R_19772954_SNP [dm6]	A	G	2.570e^-4	0.952	INTERGENIC
3L	19967126	3L_19967126_DEL [dm3] 3L_19974026_DEL [dm6]	TATCTAATGTTGAA...	T	2.574e^-4	0.952	INTRON Ac76E
2L	2819594	2L_2819594_SNP [dm3] 2L_2819594_SNP [dm6]	A	T	2.595e^-4	0.952	INTRON Duox	TF binding site mE1_TFBS_cad
3R	14935964	3R_14935964_INS [dm3] 3R_19110242_INS [dm6]	C	CTTGG	2.601e^-4	0.952	INTRON CG6040
3L	4493969	3L_4493969_SNP [dm3] 3L_4493969_SNP [dm6]	T	C	2.605e^-4	0.952	DOWNSTREAM CR44709 INTERGENIC
2L	19804938	2L_19804938_SNP [dm3] 2L_19804938_SNP [dm6]	G	A	2.616e^-4	0.952	INTRON sick	TF binding site mE1_TFBS_cad
2R	8634444	2R_8634444_SNP [dm3] 2R_12746939_SNP [dm6]	C	A	2.628e^-4	0.952	INTRON CG42663	TF binding site mE1_TFBS_cad
2L	5580139	2L_5580139_SNP [dm3] 2L_5580139_SNP [dm6]	C	T	2.630e^-4	0.952	SYNONYMOUS_CODING CG14011	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2183033	3L_2183033_DEL [dm3] 3L_2183033_DEL [dm6]	ATAG	A	2.636e^-4	0.952	INTERGENIC
3L	14147587	3L_14147587_SNP [dm3] 3L_14154487_SNP [dm6]	T	C	2.639e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9745078	X_9745078_INS [dm3] X_9851045_INS [dm6]	A	AGACAA	2.639e^-4	0.952	UTR_3_PRIME CG32698
2R	16114686	2R_16114686_SNP [dm3] 2R_20227181_SNP [dm6]	C	T	2.641e^-4	0.952	INTERGENIC
X	19451534	X_19451534_SNP [dm3] X_19557501_SNP [dm6]	G	A	2.647e^-4	0.952	UPSTREAM mir-4966 DOWNSTREAM mir-2499 INTERGENIC
X	7531290	X_7531290_SNP [dm3] X_7637257_SNP [dm6]	G	A	2.650e^-4	0.952	INTRON ct
2R	18614987	2R_18614987_SNP [dm3] 2R_22727482_SNP [dm6]	G	A	2.654e^-4	0.952	INTRON jbug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	14865404	2L_14865404_SNP [dm3] 2L_14865404_SNP [dm6]	C	A	2.677e^-4	0.952	INTERGENIC
2R	9122791	2R_9122791_SNP [dm3] 2R_13235286_SNP [dm6]	A	C	2.680e^-4	0.952	START_GAINED CG4670 UTR_5_PRIME CG4670 UPSTREAM CG4676 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2774604	3R_2774604_SNP [dm3] 3R_6948882_SNP [dm6]	T	C	2.697e^-4	0.952	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	9187248	2L_9187248_SNP [dm3] 2L_9187248_SNP [dm6]	A	C	2.697e^-4	0.952	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1812478	3R_1812478_SNP [dm3] 3R_5986756_SNP [dm6]	T	A	2.707e^-4	0.952	INTERGENIC
3L	9410595	3L_9410595_SNP [dm3] 3L_9417495_SNP [dm6]	A	T	2.707e^-4	0.952	UPSTREAM CG3982 INTRON CG3967
3L	11890608	3L_11890608_SNP [dm3] 3L_11897508_SNP [dm6]	G	A	2.707e^-4	0.952	INTRON CG44837
X	5152394	X_5152394_INS [dm3] X_5258361_INS [dm6]	A	AG	2.709e^-4	0.952	INTERGENIC
X	19106692	X_19106692_SNP [dm3] X_19212659_SNP [dm6]	T	G	2.712e^-4	0.952	UPSTREAM CG14195 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	14277232	2R_14277232_SNP [dm3] 2R_18389727_SNP [dm6]	A	T	2.713e^-4	0.952	UPSTREAM CG15065 DOWNSTREAM IM3 & 2 others INTERGENIC
X	8055439	X_8055439_SNP [dm3] X_8161406_SNP [dm6]	A	G	2.725e^-4	0.952	UTR_3_PRIME CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8055443	X_8055443_INS [dm3] X_8161410_INS [dm6]	T	TTAG	2.725e^-4	0.952	UTR_3_PRIME CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3285546	2L_3285546_SNP [dm3] 2L_3285546_SNP [dm6]	G	C	2.726e^-4	0.952	INTERGENIC
3R	24604876	3R_24604876_SNP [dm3] 3R_28779154_SNP [dm6]	G	A	2.729e^-4	0.952	INTERGENIC
3R	22999928	3R_22999928_SNP [dm3] 3R_27174206_SNP [dm6]	C	T	2.733e^-4	0.952	SYNONYMOUS_CODING Ser	TF binding site mE1_TFBS_cad
2R	6250271	2R_6250271_SNP [dm3] 2R_10362766_SNP [dm6]	G	A	2.734e^-4	0.952	SYNONYMOUS_CODING Gr47a INTRON CG42732
2L	5180036	2L_5180036_SNP [dm3] 2L_5180036_SNP [dm6]	G	A	2.736e^-4	0.952	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	19131309	2R_19131309_SNP [dm3] 2R_23243786_SNP [dm6]	C	A	2.737e^-4	0.952	DOWNSTREAM yip3 INTERGENIC
2R	12853304	2R_12853304_SNP [dm3] 2R_16965799_SNP [dm6]	A	G	2.742e^-4	0.952	DOWNSTREAM CR44376 INTERGENIC
2L	16232878	2L_16232878_SNP [dm3] 2L_16232878_SNP [dm6]	G	A	2.749e^-4	0.952	INTRON CG42817
2R	18679037	2R_18679037_DEL [dm3] 2R_22791532_DEL [dm6]	TT	T	2.753e^-4	0.952	INTRON CG42260
3R	1518866	3R_1518866_SNP [dm3] 3R_5693144_SNP [dm6]	C	T	2.762e^-4	0.952	NON_SYNONYMOUS_CODING CG2104 INTRON plx
3R	8349830	3R_8349830_SNP [dm3] 3R_12524108_SNP [dm6]	G	T	2.765e^-4	0.952	INTRON Octbeta3R
2L	10460136	2L_10460136_SNP [dm3] 2L_10460136_SNP [dm6]	C	T	2.765e^-4	0.952	NON_SYNONYMOUS_CODING LM408
2L	2629729	2L_2629729_SNP [dm3] 2L_2629729_SNP [dm6]	T	G	2.767e^-4	0.952	INTERGENIC
2R	14172510	2R_14172510_SNP [dm3] 2R_18285005_SNP [dm6]	T	A	2.769e^-4	0.952	DOWNSTREAM sbb INTRON sbb
2L	15749307	2L_15749307_SNP [dm3] 2L_15749307_SNP [dm6]	T	A	2.775e^-4	0.952	DOWNSTREAM l_2_35Di & 1 other INTERGENIC
3L	14202173	3L_14202173_INS [dm3] 3L_14209073_INS [dm6]	T	TACATATACA	2.779e^-4	0.952	INTRON nuf
2L	14635880	2L_14635880_SNP [dm3] 2L_14635880_SNP [dm6]	A	C	2.790e^-4	0.952	INTRON osp
2L	5066313	2L_5066313_SNP [dm3] 2L_5066313_SNP [dm6]	T	A	2.792e^-4	0.952	INTRON qtc
3L	9659957	3L_9659957_DEL [dm3] 3L_9666857_DEL [dm6]	CATTGTGTGC	T	2.798e^-4	0.952	INTRON fry
2R	20378008	2R_20378008_SNP [dm3] 2R_24490485_SNP [dm6]	T	A	2.802e^-4	0.952	UTR_3_PRIME CG13579
3R	5429291	3R_5429291_SNP [dm3] 3R_9603569_SNP [dm6]	A	T	2.817e^-4	0.952	INTRON CG8312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_sens
3R	14960664	3R_14960664_SNP [dm3] 3R_19134942_SNP [dm6]	C	T	2.819e^-4	0.952	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
X	9278543	X_9278543_SNP [dm3] X_9384510_SNP [dm6]	A	C	2.830e^-4	0.952	INTRON mgl
2R	6305271	2R_6305271_SNP [dm3] 2R_10417766_SNP [dm6]	C	A	2.853e^-4	0.952	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	11534543	X_11534543_SNP [dm3] X_11640510_SNP [dm6]	C	A	2.856e^-4	0.952	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl
3L	16550224	3L_16550224_SNP [dm3] 3L_16557124_SNP [dm6]	T	C	2.874e^-4	0.952	SYNONYMOUS_CODING CG4229	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9592505	3L_9592505_SNP [dm3] 3L_9599405_SNP [dm6]	C	G	2.889e^-4	0.952	SYNONYMOUS_CODING CG3222	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19106663	X_19106663_SNP [dm3] X_19212630_SNP [dm6]	C	A	2.893e^-4	0.952	UPSTREAM CG14195 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	2731489	3R_2731489_SNP [dm3] 3R_6905767_SNP [dm6]	A	T	2.903e^-4	0.952	INTRON Antp
2L	15051832	2L_15051832_SNP [dm3] 2L_15051832_SNP [dm6]	G	A	2.909e^-4	0.952	SYNONYMOUS_CODING ck	regulatory region REDfly_CRMs
3R	26505251	3R_26505251_SNP [dm3] 3R_30679529_SNP [dm6]	C	T	2.911e^-4	0.952	INTERGENIC
3L	9659894	3L_9659894_SNP [dm3] 3L_9666794_SNP [dm6]	A	G	2.914e^-4	0.952	INTRON fry
3L	2655094	3L_2655094_SNP [dm3] 3L_2655094_SNP [dm6]	C	A	2.915e^-4	0.952	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
3L	8745771	3L_8745771_SNP [dm3] 3L_8752671_SNP [dm6]	G	A	2.920e^-4	0.952	UPSTREAM Fhos INTERGENIC
2L	8370173	2L_8370173_SNP [dm3] 2L_8370173_SNP [dm6]	T	G	2.929e^-4	0.952	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
3R	3514592	3R_3514592_SNP [dm3] 3R_7688870_SNP [dm6]	A	G	2.938e^-4	0.952	INTRON Nlg1
2R	18614986	2R_18614986_SNP [dm3] 2R_22727481_SNP [dm6]	A	C	2.940e^-4	0.952	INTRON jbug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1218839	3L_1218839_SNP [dm3] 3L_1218839_SNP [dm6]	A	C	2.948e^-4	0.952	UPSTREAM LysP INTRON mwh
X	9476270	X_9476270_SNP [dm3] X_9582237_SNP [dm6]	A	G	2.951e^-4	0.952	UPSTREAM CR45540 INTERGENIC
3L	4565711	3L_4565711_SNP [dm3] 3L_4565711_SNP [dm6]	G	C	2.958e^-4	0.952	INTRON CG42540	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19003743	X_19003743_SNP [dm3] X_19109710_SNP [dm6]	G	T	2.961e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	20100945	3L_20100945_SNP [dm3] 3L_20107845_SNP [dm6]	T	G	2.961e^-4	0.952	DOWNSTREAM Ir76b & 1 other INTERGENIC	transposable element FlyBase
3R	1371029	3R_1371029_SNP [dm3] 3R_5545307_SNP [dm6]	G	A	2.966e^-4	0.952	INTRON CG2519	TF binding site mE1_TFBS_cad
3L	575683	3L_575683_SNP [dm3] 3L_575683_SNP [dm6]	T	C	2.970e^-4	0.952	UTR_3_PRIME hipk
2L	9213383	2L_9213383_SNP [dm3] 2L_9213383_SNP [dm6]	A	T	2.972e^-4	0.952	INTRON tai
2L	4463448	2L_4463448_DEL [dm3] 2L_4463448_DEL [dm6]	AAT	GG	2.980e^-4	0.952	UPSTREAM CG15436 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16010108	2L_16010108_SNP [dm3] 2L_16010108_SNP [dm6]	G	A	2.996e^-4	0.952	INTRON beat-Ic
2R	18932255	2R_18932255_SNP [dm3] 2R_23044732_SNP [dm6]	C	A	2.998e^-4	0.952	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	12566386	2L_12566386_SNP [dm3] 2L_12566386_SNP [dm6]	T	G	3.000e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12349233	3L_12349233_SNP [dm3] 3L_12356133_SNP [dm6]	C	G	3.003e^-4	0.952	INTERGENIC
2R	20365330	2R_20365330_SNP [dm3] 2R_24477807_SNP [dm6]	C	T	3.009e^-4	0.952	INTRON CG13579	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14363647	2L_14363647_SNP [dm3] 2L_14363647_SNP [dm6]	A	G	3.030e^-4	0.952	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6305142	2R_6305142_INS [dm3] 2R_10417637_INS [dm6]	A	AGGTTGGACAAA...	3.037e^-4	0.952	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	8212109	3R_8212109_SNP [dm3] 3R_12386387_SNP [dm6]	T	C	3.037e^-4	0.952	NON_SYNONYMOUS_CODING CG34402 UPSTREAM CG33098 DOWNSTREAM GstD11	TF binding site mE1_TFBS_chinmo
3R	17912327	3R_17912327_SNP [dm3] 3R_22086605_SNP [dm6]	C	T	3.043e^-4	0.952	UPSTREAM CG5791 & 1 other INTRON CG5778
X	19453798	X_19453798_DEL [dm3] X_19559765_DEL [dm6]	ATACA	A	3.057e^-4	0.952	UTR_3_PRIME Grip84 DOWNSTREAM mir-975 & 2 others
2L	4102584	2L_4102584_SNP [dm3] 2L_4102584_SNP [dm6]	C	A	3.058e^-4	0.952	INTRON ed
2L	1691306	2L_1691306_SNP [dm3] 2L_1691306_SNP [dm6]	T	C	3.060e^-4	0.952	INTRON chinmo
X	19091953	X_19091953_SNP [dm3] X_19197920_SNP [dm6]	G	A	3.065e^-4	0.952	UTR_3_PRIME CG7990
3R	9676783	3R_9676783_DEL [dm3] 3R_13851061_DEL [dm6]	GGAAAATTAAGCTATGCGAA...	CCC	3.075e^-4	0.952	INTERGENIC
3L	10918645	3L_10918645_SNP [dm3] 3L_10925545_SNP [dm6]	C	A	3.080e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9571799	2R_9571799_SNP [dm3] 2R_13684294_SNP [dm6]	C	T	3.083e^-4	0.952	INTRON fas
3L	19512027	3L_19512027_SNP [dm3] 3L_19518927_SNP [dm6]	G	A	3.084e^-4	0.952	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3L	4391937	3L_4391937_INS [dm3] 3L_4391937_INS [dm6]	C	CC	3.085e^-4	0.952	INTRON slow	TF binding site mE1_TFBS_cad
2R	17747290	2R_17747290_SNP [dm3] 2R_21859785_SNP [dm6]	T	C	3.098e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20357197	3L_20357197_SNP [dm3] 3L_20364097_SNP [dm6]	T	G	3.104e^-4	0.952	SYNONYMOUS_CODING Toll-9	TF binding site mE1_TFBS_HSA
3R	16524088	3R_16524088_SNP [dm3] 3R_20698366_SNP [dm6]	T	C	3.106e^-4	0.952	SYNONYMOUS_CODING Oamb	TF binding site mE1_TFBS_cad
X	10567261	X_10567261_SNP [dm3] X_10673228_SNP [dm6]	G	C	3.111e^-4	0.952	SYNONYMOUS_CODING CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
2L	4631737	2L_4631737_SNP [dm3] 2L_4631737_SNP [dm6]	T	C	3.115e^-4	0.952	INTERGENIC
3R	9815037	3R_9815037_SNP [dm3] 3R_13989315_SNP [dm6]	G	T	3.116e^-4	0.952	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	20359348	2R_20359348_SNP [dm3] 2R_24471825_SNP [dm6]	G	A	3.116e^-4	0.952	UPSTREAM CG3492 INTRON CG13579
3L	17148410	3L_17148410_SNP [dm3] 3L_17155310_SNP [dm6]	C	T	3.116e^-4	0.952	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	343234	3L_343234_SNP [dm3] 3L_343234_SNP [dm6]	G	T	3.120e^-4	0.952	UPSTREAM mthl10 DOWNSTREAM mth INTRON Ptpmeg
3R	23363365	3R_23363365_SNP [dm3] 3R_27537643_SNP [dm6]	A	T	3.130e^-4	0.952	UPSTREAM CR44288 EXON CR44289
3R	7748044	3R_7748044_SNP [dm3] 3R_11922322_SNP [dm6]	C	T	3.133e^-4	0.952	INTRON Cad87A
2L	9825805	2L_9825805_SNP [dm3] 2L_9825805_SNP [dm6]	G	A	3.135e^-4	0.952	INTRON nAChRalpha6
2R	9968289	2R_9968289_SNP [dm3] 2R_14080784_SNP [dm6]	T	G	3.138e^-4	0.952	INTRON Prosap
2R	16088739	2R_16088739_SNP [dm3] 2R_20201234_SNP [dm6]	T	C	3.144e^-4	0.952	INTERGENIC
2L	3085146	2L_3085146_SNP [dm3] 2L_3085146_SNP [dm6]	C	G	3.144e^-4	0.952	INTRON toc
3R	25795311	3R_25795311_SNP [dm3] 3R_29969589_SNP [dm6]	C	T	3.151e^-4	0.952	UPSTREAM TkR99D INTERGENIC
2L	4463458	2L_4463458_SNP [dm3] 2L_4463458_SNP [dm6]	T	C	3.151e^-4	0.952	UPSTREAM CG15436 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10235383	2L_10235383_SNP [dm3] 2L_10235383_SNP [dm6]	G	A	3.155e^-4	0.952	SYNONYMOUS_CODING mthl15 UTR_3_PRIME mthl15 DOWNSTREAM eEF1delta	TF binding site BDTNP1_TFBS_twi
3R	1404591	3R_1404591_SNP [dm3] 3R_5578869_SNP [dm6]	T	A	3.159e^-4	0.952	UTR_3_PRIME CRMP DOWNSTREAM CG2926
2L	6166478	2L_6166478_SNP [dm3] 2L_6166478_SNP [dm6]	A	G	3.162e^-4	0.952	INTERGENIC
3R	14170957	3R_14170957_SNP [dm3] 3R_18345235_SNP [dm6]	C	A	3.163e^-4	0.952	INTRON CG15803
2L	3477973	2L_3477973_SNP [dm3] 2L_3477973_SNP [dm6]	A	C	3.165e^-4	0.952	UPSTREAM Thor DOWNSTREAM CR43928 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14193035	2R_14193035_DEL [dm3] 2R_18305530_DEL [dm6]	TT	T	3.166e^-4	0.952	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	19756819	2L_19756819_SNP [dm3] 2L_19756819_SNP [dm6]	A	T	3.174e^-4	0.952	UTR_5_PRIME CG10631 DOWNSTREAM CG10628
X	9476185	X_9476185_SNP [dm3] X_9582152_SNP [dm6]	G	A	3.180e^-4	0.952	UPSTREAM CR45540 INTERGENIC
3L	19512034	3L_19512034_SNP [dm3] 3L_19518934_SNP [dm6]	G	T	3.182e^-4	0.952	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3L	5931521	3L_5931521_SNP [dm3] 3L_5938421_SNP [dm6]	C	T	3.185e^-4	0.952	INTRON CG33993
3R	21889977	3R_21889977_SNP [dm3] 3R_26064255_SNP [dm6]	T	A	3.200e^-4	0.952	INTERGENIC
3L	4253709	3L_4253709_SNP [dm3] 3L_4253709_SNP [dm6]	C	T	3.203e^-4	0.952	INTRON ago	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3730036	X_3730036_SNP [dm3] X_3836003_SNP [dm6]	C	T	3.204e^-4	0.952	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	9476378	X_9476378_SNP [dm3] X_9582345_SNP [dm6]	G	A	3.205e^-4	0.952	UPSTREAM CR45540 INTERGENIC
2R	13025461	2R_13025461_SNP [dm3] 2R_17137956_SNP [dm6]	T	C	3.207e^-4	0.952	SYNONYMOUS_CODING CG11395
3L	2278086	3L_2278086_SNP [dm3] 3L_2278086_SNP [dm6]	T	G	3.209e^-4	0.952	DOWNSTREAM yellow-g2 INTERGENIC
3R	8083232	3R_8083232_SNP [dm3] 3R_12257510_SNP [dm6]	T	A	3.215e^-4	0.952	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	26513657	3R_26513657_SNP [dm3] 3R_30687935_SNP [dm6]	C	G	3.227e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16698790	2L_16698790_SNP [dm3] 2L_16698790_SNP [dm6]	T	C	3.233e^-4	0.952	DOWNSTREAM mir-9c & 3 others INTRON grp EXON mir-9b
2L	3396784	2L_3396784_SNP [dm3] 2L_3396784_SNP [dm6]	T	G	3.233e^-4	0.952	DOWNSTREAM CR44792 INTERGENIC
3R	27073476	3R_27073476_DEL [dm3] 3R_31247754_DEL [dm6]	GTAGCTGGG	G	3.239e^-4	0.952	INTRON qless
2R	19740513	2R_19740513_SNP [dm3] 2R_23852990_SNP [dm6]	G	C	3.244e^-4	0.952	SYNONYMOUS_CODING gbb DOWNSTREAM bgcn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19914166	3R_19914166_SNP [dm3] 3R_24088444_SNP [dm6]	T	C	3.246e^-4	0.952	INTRON 4EHP
2R	14962022	2R_14962022_SNP [dm3] 2R_19074517_SNP [dm6]	T	C	3.246e^-4	0.952	INTRON 5-HT1A
3R	5042790	3R_5042790_SNP [dm3] 3R_9217068_SNP [dm6]	A	G	3.257e^-4	0.952	INTRON pum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15753502	3R_15753502_SNP [dm3] 3R_19927780_SNP [dm6]	G	T	3.257e^-4	0.952	INTRON CG4459	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5695756	2L_5695756_SNP [dm3] 2L_5695756_SNP [dm6]	A	G	3.262e^-4	0.952	INTERGENIC
3R	8268696	3R_8268696_SNP [dm3] 3R_12442974_SNP [dm6]	C	A	3.273e^-4	0.952	UPSTREAM Desat1 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7267790	2R_7267790_SNP [dm3] 2R_11380285_SNP [dm6]	T	C	3.287e^-4	0.952	DOWNSTREAM Sod3 INTERGENIC
2R	15755456	2R_15755456_SNP [dm3] 2R_19867951_SNP [dm6]	G	C	3.295e^-4	0.952	UPSTREAM Obp56i & 1 other INTRON Obp56i
3R	17909789	3R_17909789_SNP [dm3] 3R_22084067_SNP [dm6]	C	T	3.306e^-4	0.952	DOWNSTREAM CG13408 INTERGENIC
3R	12566371	3R_12566371_SNP [dm3] 3R_16740649_SNP [dm6]	A	G	3.307e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
X	3517989	X_3517989_SNP [dm3] X_3623956_SNP [dm6]	T	A	3.313e^-4	0.952	INTRON AstA-R1
X	5572600	X_5572600_SNP [dm3] X_5678567_SNP [dm6]	C	T	3.327e^-4	0.952	INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3L	11039144	3L_11039144_SNP [dm3] 3L_11046044_SNP [dm6]	T	C	3.336e^-4	0.952	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	18367064	2R_18367064_SNP [dm3] 2R_22479559_SNP [dm6]	G	T	3.341e^-4	0.952	INTRON CG4752
3R	17908415	3R_17908415_SNP [dm3] 3R_22082693_SNP [dm6]	G	A	3.368e^-4	0.952	INTRON CG13408
3R	1939840	3R_1939840_SNP [dm3] 3R_6114118_SNP [dm6]	C	T	3.374e^-4	0.952	INTERGENIC
3R	26504788	3R_26504788_SNP [dm3] 3R_30679066_SNP [dm6]	T	A	3.379e^-4	0.952	INTERGENIC
2L	5034651	2L_5034651_SNP [dm3] 2L_5034651_SNP [dm6]	G	A	3.387e^-4	0.952	NON_SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17463869	2R_17463869_SNP [dm3] 2R_21576364_SNP [dm6]	T	C	3.390e^-4	0.952	UPSTREAM CG10440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24610830	3R_24610830_SNP [dm3] 3R_28785108_SNP [dm6]	C	T	3.396e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13996704	2R_13996704_SNP [dm3] 2R_18109199_SNP [dm6]	A	T	3.399e^-4	0.952	UPSTREAM CG5756 & 1 other INTERGENIC
2L	3239013	2L_3239013_SNP [dm3] 2L_3239013_SNP [dm6]	A	T	3.402e^-4	0.952	INTERGENIC
3R	14391012	3R_14391012_SNP [dm3] 3R_18565290_SNP [dm6]	G	A	3.413e^-4	0.952	UPSTREAM CG43210 & 1 other INTERGENIC
X	2503207	X_2503207_INS [dm3] X_2609174_INS [dm6]	A	AA	3.417e^-4	0.952	UPSTREAM Bzd DOWNSTREAM CG8636 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	13641876	2R_13641876_SNP [dm3] 2R_17754371_SNP [dm6]	C	T	3.423e^-4	0.952	SYNONYMOUS_CODING CG6385	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18349556	2R_18349556_SNP [dm3] 2R_22462051_SNP [dm6]	C	T	3.427e^-4	0.952	INTRON CG10384
2L	6238935	2L_6238935_DEL [dm3] 2L_6238935_DEL [dm6]	CCAAGAGGTAGAACGAC...	C	3.429e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	6585791	3L_6585791_SNP [dm3] 3L_6592691_SNP [dm6]	G	T	3.442e^-4	0.952	UTR_3_PRIME CG18769 DOWNSTREAM CG18769
2R	14473777	2R_14473777_SNP [dm3] 2R_18586272_SNP [dm6]	G	A	3.486e^-4	0.952	INTRON GEFmeso	TF binding site mE1_TFBS_sens
X	13959390	X_13959390_SNP [dm3] X_14065357_SNP [dm6]	C	T	3.487e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13959391	X_13959391_SNP [dm3] X_14065358_SNP [dm6]	A	T	3.487e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3814694	2L_3814694_SNP [dm3] 2L_3814694_SNP [dm6]	A	T	3.488e^-4	0.952	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	20171133	2R_20171133_SNP [dm3] 2R_24283610_SNP [dm6]	C	A	3.494e^-4	0.952	INTRON nvy
2R	13016545	2R_13016545_SNP [dm3] 2R_17129040_SNP [dm6]	C	G	3.500e^-4	0.952	NON_SYNONYMOUS_CODING Cda9
X	9446772	X_9446772_SNP [dm3] X_9552739_SNP [dm6]	G	A	3.544e^-4	0.952	SYNONYMOUS_CODING l_1_G0320	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	16647645	3R_16647645_SNP [dm3] 3R_20821923_SNP [dm6]	C	A	3.552e^-4	0.952	UPSTREAM RpS20 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	15339967	2L_15339967_DEL [dm3] 2L_15339967_DEL [dm6]	ATAGA	A	3.562e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11690681	2R_11690681_SNP [dm3] 2R_15803176_SNP [dm6]	G	T	3.570e^-4	0.952	INTRON Zasp52 & 1 other
2R	16782725	2R_16782725_SNP [dm3] 2R_20895220_SNP [dm6]	T	G	3.573e^-4	0.952	INTRON otp
3L	2273734	3L_2273734_SNP [dm3] 3L_2273734_SNP [dm6]	T	C	3.573e^-4	0.952	UPSTREAM tRNA:CR32303 & 1 other INTERGENIC
3R	13229823	3R_13229823_SNP [dm3] 3R_17404101_SNP [dm6]	A	T	3.585e^-4	0.952	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
3R	10659273	3R_10659273_SNP [dm3] 3R_14833551_SNP [dm6]	G	A	3.620e^-4	0.952	INTRON btsz
3L	1079912	3L_1079912_SNP [dm3] 3L_1079912_SNP [dm6]	C	T	3.624e^-4	0.952	INTRON bab1
2L	5494847	2L_5494847_SNP [dm3] 2L_5494847_SNP [dm6]	C	A	3.628e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7555223	2R_7555223_SNP [dm3] 2R_11667718_SNP [dm6]	T	A	3.644e^-4	0.952	INTRON Roc2 & 1 other
2L	5840851	2L_5840851_SNP [dm3] 2L_5840851_SNP [dm6]	G	A	3.648e^-4	0.952	INTRON TrissinR
X	13959358	X_13959358_SNP [dm3] X_14065325_SNP [dm6]	A	G	3.652e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7262550	2R_7262550_SNP [dm3] 2R_11375045_SNP [dm6]	G	A	3.655e^-4	0.952	UPSTREAM CG13203 INTRON CG13203	TF binding site mE1_TFBS_chinmo
2L	2630019	2L_2630019_SNP [dm3] 2L_2630019_SNP [dm6]	C	G	3.667e^-4	0.952	INTERGENIC
3L	17468576	3L_17468576_SNP [dm3] 3L_17475476_SNP [dm6]	C	T	3.668e^-4	0.952	SYNONYMOUS_CODING CG7580 UPSTREAM CG34250 DOWNSTREAM CG7589	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18742094	X_18742094_SNP [dm3] X_18848061_SNP [dm6]	C	T	3.669e^-4	0.952	SYNONYMOUS_CODING CG7280 UPSTREAM CG34422 INTRON CG34422	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	3395883	2L_3395883_SNP [dm3] 2L_3395883_SNP [dm6]	T	C	3.670e^-4	0.952	INTERGENIC
3L	14202172	3L_14202172_SNP [dm3] 3L_14209072_SNP [dm6]	G	A	3.670e^-4	0.952	INTRON nuf
3R	26505192	3R_26505192_SNP [dm3] 3R_30679470_SNP [dm6]	A	C	3.676e^-4	0.952	INTERGENIC
2R	14664147	2R_14664147_SNP [dm3] 2R_18776642_SNP [dm6]	C	T	3.680e^-4	0.952	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18867616	2R_18867616_SNP [dm3] 2R_22980093_SNP [dm6]	G	A	3.685e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19014571	X_19014571_SNP [dm3] X_19120538_SNP [dm6]	T	G	3.685e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15637386	3R_15637386_SNP [dm3] 3R_19811664_SNP [dm6]	G	A	3.688e^-4	0.952	INTRON bnl
3L	2278080	3L_2278080_SNP [dm3] 3L_2278080_SNP [dm6]	G	C	3.693e^-4	0.952	DOWNSTREAM yellow-g2 INTERGENIC
3L	16327048	3L_16327048_SNP [dm3] 3L_16333948_SNP [dm6]	G	A	3.697e^-4	0.952	DOWNSTREAM CG13056 INTERGENIC
2R	18932280	2R_18932280_SNP [dm3] 2R_23044757_SNP [dm6]	T	G	3.697e^-4	0.952	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	7544296	3L_7544296_SNP [dm3] 3L_7551196_SNP [dm6]	T	A	3.702e^-4	0.952	INTERGENIC
2R	5272018	2R_5272018_SNP [dm3] 2R_9384513_SNP [dm6]	C	T	3.708e^-4	0.952	INTRON CG13954
2R	17121342	2R_17121342_SNP [dm3] 2R_21233837_SNP [dm6]	T	C	3.717e^-4	0.952	INTRON ASPP
3R	15592568	3R_15592568_DEL [dm3] 3R_19766846_DEL [dm6]	CTCAAC	C	3.724e^-4	0.952	INTRON GluClalpha
3R	3243856	3R_3243856_SNP [dm3] 3R_7418134_SNP [dm6]	C	T	3.746e^-4	0.952	UPSTREAM CG31544 INTERGENIC
3R	3972651	3R_3972651_SNP [dm3] 3R_8146929_SNP [dm6]	C	T	3.746e^-4	0.952	DOWNSTREAM grn INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	9805720	2L_9805720_SNP [dm3] 2L_9805720_SNP [dm6]	C	T	3.752e^-4	0.952	INTRON nAChRalpha6	TF binding site mE1_TFBS_sens
X	11573356	X_11573356_SNP [dm3] X_11679323_SNP [dm6]	C	G	3.766e^-4	0.952	UPSTREAM CG2371 INTRON bif	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	23537152	3R_23537152_SNP [dm3] 3R_27711430_SNP [dm6]	T	C	3.771e^-4	0.952	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	19091980	X_19091980_SNP [dm3] X_19197947_SNP [dm6]	G	A	3.772e^-4	0.952	UTR_3_PRIME CG7990
2R	19108571	2R_19108571_INS [dm3] 2R_23221048_INS [dm6]	C	CAGCGGCTTGC...	3.780e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9127467	2R_9127467_INS [dm3] 2R_13239962_INS [dm6]	G	GGATTTGCTCGA...	3.781e^-4	0.952	UPSTREAM CG4679 INTRON GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13229904	3R_13229904_SNP [dm3] 3R_17404182_SNP [dm6]	C	T	3.782e^-4	0.952	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
3L	10935945	3L_10935945_SNP [dm3] 3L_10942845_SNP [dm6]	T	A	3.782e^-4	0.952	INTERGENIC
3L	10935960	3L_10935960_SNP [dm3] 3L_10942860_SNP [dm6]	T	C	3.782e^-4	0.952	INTERGENIC
2R	6983857	2R_6983857_SNP [dm3] 2R_11096352_SNP [dm6]	G	A	3.786e^-4	0.952	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14968091	3L_14968091_SNP [dm3] 3L_14974991_SNP [dm6]	G	A	3.801e^-4	0.952	UTR_5_PRIME Ocho UPSTREAM Ocho	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3729848	X_3729848_SNP [dm3] X_3835815_SNP [dm6]	T	C	3.806e^-4	0.952	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13252060	3L_13252060_SNP [dm3] 3L_13258960_SNP [dm6]	G	A	3.809e^-4	0.952	INTRON caps
3R	10580977	3R_10580977_SNP [dm3] 3R_14755255_SNP [dm6]	G	A	3.810e^-4	0.952	UPSTREAM CG7362 INTRON jvl
3L	15248196	3L_15248196_SNP [dm3] 3L_15255096_SNP [dm6]	T	A	3.814e^-4	0.952	INTERGENIC
3R	14126991	3R_14126991_SNP [dm3] 3R_18301269_SNP [dm6]	T	A	3.818e^-4	0.952	NON_SYNONYMOUS_CODING CG18600 DOWNSTREAM CG7126	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12462107	3R_12462107_SNP [dm3] 3R_16636385_SNP [dm6]	C	T	3.820e^-4	0.952	INTRON Fas1
3R	8234140	3R_8234140_SNP [dm3] 3R_12408418_SNP [dm6]	C	G	3.835e^-4	0.952	NON_SYNONYMOUS_CODING CG5196 UPSTREAM CG5196 DOWNSTREAM CG5167	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	8280116	3R_8280116_SNP [dm3] 3R_12454394_SNP [dm6]	A	C	3.836e^-4	0.952	INTRON CG18549	TF binding site BDTNP1_TFBS_prd
3R	15466761	3R_15466761_SNP [dm3] 3R_19641039_SNP [dm6]	A	C	3.838e^-4	0.952	UTR_5_PRIME subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11039161	3L_11039161_SNP [dm3] 3L_11046061_SNP [dm6]	A	T	3.847e^-4	0.952	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	11039162	3L_11039162_SNP [dm3] 3L_11046062_SNP [dm6]	G	A	3.847e^-4	0.952	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	2379733	3L_2379733_SNP [dm3] 3L_2379733_SNP [dm6]	A	G	3.853e^-4	0.952	INTRON CG45186
X	11119301	X_11119301_SNP [dm3] X_11225268_SNP [dm6]	T	C	3.857e^-4	0.952	INTRON CG44422
3L	2999781	3L_2999781_SNP [dm3] 3L_2999781_SNP [dm6]	T	G	3.867e^-4	0.952	INTERGENIC
X	3143708	X_3143708_SNP [dm3] X_3249675_SNP [dm6]	G	C	3.873e^-4	0.952	UTR_5_PRIME Sgs4 UPSTREAM Pig1 INTRON dnc	regulatory region REDfly_CRMs
2L	6024882	2L_6024882_SNP [dm3] 2L_6024882_SNP [dm6]	G	A	3.880e^-4	0.952	UPSTREAM CG9107 DOWNSTREAM CG9109 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
3R	16853866	3R_16853866_SNP [dm3] 3R_21028144_SNP [dm6]	G	C	3.901e^-4	0.952	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
3L	2278285	3L_2278285_SNP [dm3] 3L_2278285_SNP [dm6]	C	A	3.902e^-4	0.952	DOWNSTREAM yellow-g2 INTERGENIC	TF binding site mE1_TFBS_inv
2R	14514811	2R_14514811_SNP [dm3] 2R_18627306_SNP [dm6]	G	A	3.903e^-4	0.952	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	4896786	2L_4896786_SNP [dm3] 2L_4896786_SNP [dm6]	C	T	3.903e^-4	0.952	INTRON CG3036
2L	8069037	2L_8069037_SNP [dm3] 2L_8069037_SNP [dm6]	C	T	3.908e^-4	0.952	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_sens
2L	8069039	2L_8069039_SNP [dm3] 2L_8069039_SNP [dm6]	G	A	3.908e^-4	0.952	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_sens
3R	16931091	3R_16931091_SNP [dm3] 3R_21105369_SNP [dm6]	T	C	3.912e^-4	0.952	UTR_3_PRIME Sec15 DOWNSTREAM CG5745	TF binding site mE1_TFBS_cad
2R	17463863	2R_17463863_SNP [dm3] 2R_21576358_SNP [dm6]	C	T	3.919e^-4	0.952	UPSTREAM CG10440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11590003	2R_11590003_SNP [dm3] 2R_15702498_SNP [dm6]	G	A	3.947e^-4	0.952	UPSTREAM CG30080 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8055448	X_8055448_SNP [dm3] X_8161415_SNP [dm6]	A	C	3.947e^-4	0.952	UTR_3_PRIME CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17155500	2R_17155500_SNP [dm3] 2R_21267995_SNP [dm6]	T	G	3.950e^-4	0.952	UPSTREAM CG30393 INTRON Rgk3
X	4020468	X_4020468_SNP [dm3] X_4126435_SNP [dm6]	T	C	3.957e^-4	0.952	UTR_3_PRIME tyf DOWNSTREAM tyf
3L	8308933	3L_8308933_SNP [dm3] 3L_8315833_SNP [dm6]	G	C	3.957e^-4	0.952	UPSTREAM CG7185 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	1741656	3R_1741656_DEL [dm3] 3R_5915934_DEL [dm6]	TT	T	3.964e^-4	0.952	INTRON CG34113
3L	7087114	3L_7087114_SNP [dm3] 3L_7094014_SNP [dm6]	C	T	3.966e^-4	0.952	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19912168	2R_19912168_SNP [dm3] 2R_24024645_SNP [dm6]	C	T	3.969e^-4	0.952	DOWNSTREAM CG11388 INTRON Adk2 EXON CR45350	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3732886	X_3732886_SNP [dm3] X_3838853_SNP [dm6]	C	T	3.971e^-4	0.952	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	577186	3L_577186_SNP [dm3] 3L_577186_SNP [dm6]	C	A	3.974e^-4	0.952	UTR_3_PRIME hipk
2L	10481445	2L_10481445_SNP [dm3] 2L_10481445_SNP [dm6]	T	C	3.988e^-4	0.952	SYNONYMOUS_CODING RluA-2
2R	14363266	2R_14363266_SNP [dm3] 2R_18475761_SNP [dm6]	A	G	3.998e^-4	0.952	INTRON CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9968568	2R_9968568_SNP [dm3] 2R_14081063_SNP [dm6]	C	G	3.999e^-4	0.952	INTRON Prosap
X	11119294	X_11119294_SNP [dm3] X_11225261_SNP [dm6]	A	T	3.999e^-4	0.952	INTRON CG44422
2L	3698933	2L_3698933_SNP [dm3] 2L_3698933_SNP [dm6]	A	G	4.012e^-4	0.952	SYNONYMOUS_CODING CG10031 UPSTREAM CG42464
3L	7087080	3L_7087080_SNP [dm3] 3L_7093980_SNP [dm6]	C	T	4.016e^-4	0.952	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5001499	3R_5001499_SNP [dm3] 3R_9175777_SNP [dm6]	A	C	4.019e^-4	0.952	INTRON pum
2R	14662621	2R_14662621_SNP [dm3] 2R_18775116_SNP [dm6]	G	A	4.030e^-4	0.952	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
X	12837852	X_12837852_SNP [dm3] X_12943819_SNP [dm6]	C	T	4.035e^-4	0.952	INTRON fne
3R	26518091	3R_26518091_SNP [dm3] 3R_30692369_SNP [dm6]	T	C	4.035e^-4	0.952	SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4857385	3R_4857385_INS [dm3] 3R_9031663_INS [dm6]	A	AA	4.041e^-4	0.952	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	2612189	3L_2612189_SNP [dm3] 3L_2612189_SNP [dm6]	T	C	4.041e^-4	0.952	INTRON Pxn
3L	13778758	3L_13778758_SNP [dm3] 3L_13785658_SNP [dm6]	T	G	4.044e^-4	0.952	INTRON bru-3
2R	20135625	2R_20135625_SNP [dm3] 2R_24248102_SNP [dm6]	G	A	4.046e^-4	0.952	DOWNSTREAM Ir60a INTRON nord
3R	20650166	3R_20650166_SNP [dm3] 3R_24824444_SNP [dm6]	G	A	4.058e^-4	0.952	INTRON niki	TF binding site mE1_TFBS_cad
3R	20650557	3R_20650557_SNP [dm3] 3R_24824835_SNP [dm6]	G	A	4.058e^-4	0.952	SYNONYMOUS_CODING niki DOWNSTREAM CG43166	TF binding site mE1_TFBS_cad
2L	14407267	2L_14407267_SNP [dm3] 2L_14407267_SNP [dm6]	T	G	4.061e^-4	0.952	INTRON elB
2R	17842762	2R_17842762_SNP [dm3] 2R_21955257_SNP [dm6]	C	T	4.068e^-4	0.952	UPSTREAM CG13494 INTERGENIC
3L	2655458	3L_2655458_SNP [dm3] 3L_2655458_SNP [dm6]	T	C	4.071e^-4	0.952	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
2R	8555121	2R_8555121_SNP [dm3] 2R_12667616_SNP [dm6]	C	A	4.075e^-4	0.952	INTRON nemy
2L	4074467	2L_4074467_SNP [dm3] 2L_4074467_SNP [dm6]	T	C	4.078e^-4	0.952	INTRON ed EXON CR44984
3L	10218423	3L_10218423_SNP [dm3] 3L_10225323_SNP [dm6]	G	A	4.087e^-4	0.952	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6396476	3L_6396476_SNP [dm3] 3L_6403376_SNP [dm6]	T	C	4.094e^-4	0.952	INTRON CG42747
X	14753800	X_14753800_SNP [dm3] X_14859767_SNP [dm6]	G	T	4.097e^-4	0.952	INTRON Flo2
X	8642616	X_8642616_SNP [dm3] X_8748583_SNP [dm6]	G	A	4.098e^-4	0.952	INTERGENIC
2L	8363657	2L_8363657_SNP [dm3] 2L_8363657_SNP [dm6]	G	A	4.100e^-4	0.952	UTR_3_PRIME RpS13 DOWNSTREAM RpS13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_sens
3R	26744509	3R_26744509_SNP [dm3] 3R_30918787_SNP [dm6]	A	G	4.107e^-4	0.952	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27022187	3R_27022187_SNP [dm3] 3R_31196465_SNP [dm6]	G	T	4.121e^-4	0.952	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13132490	X_13132490_DEL [dm3] X_13238457_DEL [dm6]	CACCC	C	4.125e^-4	0.952	INTRON mew	TF binding site BDTNP1_TFBS_dl
2R	13995646	2R_13995646_INS [dm3] 2R_18108141_INS [dm6]	T	TT	4.135e^-4	0.952	SPLICE_SITE_DONOR CG5756 INTRON CG5756
2L	15046425	2L_15046425_SNP [dm3] 2L_15046425_SNP [dm6]	G	A	4.135e^-4	0.952	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
2R	12778303	2R_12778303_SNP [dm3] 2R_16890798_SNP [dm6]	A	G	4.158e^-4	0.952	INTRON CG8910	TF binding site BDTNP1_TFBS_dl
2R	14828785	2R_14828785_SNP [dm3] 2R_18941280_SNP [dm6]	T	C	4.159e^-4	0.952	INTRON sano
3R	25789820	3R_25789820_SNP [dm3] 3R_29964098_SNP [dm6]	C	T	4.159e^-4	0.952	INTRON TkR99D
3R	19254583	3R_19254583_SNP [dm3] 3R_23428861_SNP [dm6]	T	G	4.169e^-4	0.952	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
2R	6382703	2R_6382703_SNP [dm3] 2R_10495198_SNP [dm6]	T	G	4.170e^-4	0.952	INTRON lola
3L	13686641	3L_13686641_SNP [dm3] 3L_13693541_SNP [dm6]	T	G	4.171e^-4	0.952	INTRON bru-3
2L	3027804	2L_3027804_SNP [dm3] 2L_3027804_SNP [dm6]	C	T	4.172e^-4	0.952	SYNONYMOUS_CODING CG3605	TF binding site mE1_TFBS_sens
3R	5827487	3R_5827487_SNP [dm3] 3R_10001765_SNP [dm6]	C	T	4.174e^-4	0.952	UTR_3_PRIME Mical UPSTREAM CG5359
X	8055446	X_8055446_SNP [dm3] X_8161413_SNP [dm6]	A	T	4.181e^-4	0.952	UTR_3_PRIME CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7889290	2L_7889290_SNP [dm3] 2L_7889290_SNP [dm6]	G	A	4.181e^-4	0.952	UTR_3_PRIME Spn28Db UPSTREAM Spn28Da
2L	7889291	2L_7889291_SNP [dm3] 2L_7889291_SNP [dm6]	A	T	4.181e^-4	0.952	UTR_3_PRIME Spn28Db UPSTREAM Spn28Da
3R	4862910	3R_4862910_SNP [dm3] 3R_9037188_SNP [dm6]	C	T	4.193e^-4	0.952	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15974137	2R_15974137_SNP [dm3] 2R_20086632_SNP [dm6]	G	T	4.193e^-4	0.952	EXON CR44632
3L	14553230	3L_14553230_SNP [dm3] 3L_14560130_SNP [dm6]	G	A	4.195e^-4	0.952	DOWNSTREAM Lk INTRON CR44843 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14356575	3R_14356575_SNP [dm3] 3R_18530853_SNP [dm6]	T	G	4.210e^-4	0.952	INTRON fru
2R	4949940	2R_4949940_SNP [dm3] 2R_9062435_SNP [dm6]	C	A	4.216e^-4	0.952	UTR_5_PRIME ana UPSTREAM CG8197	regulatory region REDfly_CRMs
3L	10812279	3L_10812279_SNP [dm3] 3L_10819179_SNP [dm6]	G	A	4.231e^-4	0.952	INTERGENIC
3L	4494005	3L_4494005_SNP [dm3] 3L_4494005_SNP [dm6]	A	C	4.234e^-4	0.952	DOWNSTREAM CR44709 INTERGENIC
3R	16934783	3R_16934783_SNP [dm3] 3R_21109061_SNP [dm6]	C	A	4.236e^-4	0.952	INTRON rtet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14221775	2R_14221775_SNP [dm3] 2R_18334270_SNP [dm6]	G	A	4.236e^-4	0.952	INTRON sbb
2L	7764374	2L_7764374_SNP [dm3] 2L_7764374_SNP [dm6]	G	T	4.240e^-4	0.952	INTRON CG7196
2L	10102955	2L_10102955_SNP [dm3] 2L_10102955_SNP [dm6]	C	T	4.263e^-4	0.952	INTRON CG44153 & 1 other
3L	11802520	3L_11802520_SNP [dm3] 3L_11809420_SNP [dm6]	A	T	4.263e^-4	0.952	NON_SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad
2R	14278672	2R_14278672_SNP [dm3] 2R_18391167_SNP [dm6]	C	A	4.264e^-4	0.952	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
2L	9576506	2L_9576506_SNP [dm3] 2L_9576506_SNP [dm6]	T	C	4.266e^-4	0.952	INTRON Mtpalpha	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	15312160	2R_15312160_SNP [dm3] 2R_19424655_SNP [dm6]	G	C	4.270e^-4	0.952	UPSTREAM CalpA & 1 other INTRON hts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15308167	2L_15308167_SNP [dm3] 2L_15308167_SNP [dm6]	T	C	4.276e^-4	0.952	INTERGENIC
3R	8164613	3R_8164613_SNP [dm3] 3R_12338891_SNP [dm6]	T	A	4.279e^-4	0.952	EXON CR44941
3L	5935798	3L_5935798_SNP [dm3] 3L_5942698_SNP [dm6]	C	A	4.283e^-4	0.952	INTRON CG33993
3R	26513669	3R_26513669_SNP [dm3] 3R_30687947_SNP [dm6]	C	G	4.294e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14498308	3L_14498308_SNP [dm3] 3L_14505208_SNP [dm6]	C	G	4.295e^-4	0.952	INTRON bbg
3L	12636717	3L_12636717_SNP [dm3] 3L_12643617_SNP [dm6]	C	G	4.296e^-4	0.952	INTRON CR32111	regulatory region REDfly_CRMs
2R	14514313	2R_14514313_SNP [dm3] 2R_18626808_SNP [dm6]	G	A	4.304e^-4	0.952	SYNONYMOUS_CODING Sec6	TF binding site mE1_TFBS_sens
3R	21756863	3R_21756863_SNP [dm3] 3R_25931141_SNP [dm6]	A	G	4.323e^-4	0.952	UPSTREAM CR34024 INTRON CCAP-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8362644	2L_8362644_SNP [dm3] 2L_8362644_SNP [dm6]	T	C	4.332e^-4	0.952	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	10965382	2R_10965382_INS [dm3] 2R_15077877_INS [dm6]	T	TAAT	4.332e^-4	0.952	INTERGENIC
2R	10965384	2R_10965384_SNP [dm3] 2R_15077879_SNP [dm6]	T	G	4.332e^-4	0.952	INTERGENIC
3L	15511624	3L_15511624_SNP [dm3] 3L_15518524_SNP [dm6]	C	G	4.340e^-4	0.952	UTR_5_PRIME mex1 UPSTREAM mex1 INTRON mex1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20396557	3R_20396557_SNP [dm3] 3R_24570835_SNP [dm6]	G	A	4.346e^-4	0.952	INTRON CG13624
X	12837803	X_12837803_SNP [dm3] X_12943770_SNP [dm6]	T	C	4.356e^-4	0.952	INTRON fne
2R	7379875	2R_7379875_SNP [dm3] 2R_11492370_SNP [dm6]	A	G	4.360e^-4	0.952	INTRON inv
X	5516800	X_5516800_SNP [dm3] X_5622767_SNP [dm6]	G	T	4.363e^-4	0.952	NON_SYNONYMOUS_CODING l_1_G0045 UPSTREAM mir-3645 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	4404567	2R_4404567_SNP [dm3] 2R_8517062_SNP [dm6]	G	T	4.366e^-4	0.952	INTRON mtt
3L	12494744	3L_12494744_SNP [dm3] 3L_12501644_SNP [dm6]	A	G	4.368e^-4	0.952	UTR_5_PRIME CG10681 UPSTREAM CG10638 DOWNSTREAM CG10646	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9189335	2L_9189335_SNP [dm3] 2L_9189335_SNP [dm6]	A	G	4.368e^-4	0.952	INTRON tai
2L	5695712	2L_5695712_SNP [dm3] 2L_5695712_SNP [dm6]	A	G	4.372e^-4	0.952	INTERGENIC
2L	5695716	2L_5695716_SNP [dm3] 2L_5695716_SNP [dm6]	C	T	4.372e^-4	0.952	INTERGENIC
3R	14128275	3R_14128275_SNP [dm3] 3R_18302553_SNP [dm6]	C	G	4.383e^-4	0.952	NON_SYNONYMOUS_CODING CG7126 UPSTREAM CG18600 DOWNSTREAM PKD
3R	21683761	3R_21683761_SNP [dm3] 3R_25858039_SNP [dm6]	C	T	4.401e^-4	0.952	INTRON CG5890
2R	13344924	2R_13344924_SNP [dm3] 2R_17457419_SNP [dm6]	G	C	4.408e^-4	0.952	UPSTREAM robls54B & 1 other DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
3R	16717004	3R_16717004_SNP [dm3] 3R_20891282_SNP [dm6]	G	T	4.408e^-4	0.952	UPSTREAM tRNA:CR31333 DOWNSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	11589944	2R_11589944_SNP [dm3] 2R_15702439_SNP [dm6]	A	G	4.419e^-4	0.952	UPSTREAM CG30080 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	20100946	3L_20100946_SNP [dm3] 3L_20107846_SNP [dm6]	G	T	4.431e^-4	0.952	DOWNSTREAM Ir76b & 1 other INTERGENIC	transposable element FlyBase
3L	20100948	3L_20100948_INS [dm3] 3L_20107848_INS [dm6]	T	CAG	4.431e^-4	0.952	DOWNSTREAM Ir76b & 1 other INTERGENIC	transposable element FlyBase
3L	7087053	3L_7087053_SNP [dm3] 3L_7093953_SNP [dm6]	C	T	4.433e^-4	0.952	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13002549	2R_13002549_SNP [dm3] 2R_17115044_SNP [dm6]	T	G	4.435e^-4	0.952	DOWNSTREAM CG15611 INTERGENIC
2L	5695765	2L_5695765_SNP [dm3] 2L_5695765_SNP [dm6]	A	G	4.444e^-4	0.952	INTERGENIC
2L	12028213	2L_12028213_SNP [dm3] 2L_12028213_SNP [dm6]	T	C	4.455e^-4	0.952	INTRON dmGlut	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10626142	2R_10626142_SNP [dm3] 2R_14738637_SNP [dm6]	T	A	4.457e^-4	0.952	DOWNSTREAM CG12858 EXON CR43428
2L	4432890	2L_4432890_SNP [dm3] 2L_4432890_SNP [dm6]	G	C	4.457e^-4	0.952	INTRON CG15431
2R	14277620	2R_14277620_SNP [dm3] 2R_18390115_SNP [dm6]	T	C	4.463e^-4	0.952	SYNONYMOUS_CODING CG15065 DOWNSTREAM CG15068 & 1 other
3R	1858679	3R_1858679_SNP [dm3] 3R_6032957_SNP [dm6]	A	G	4.474e^-4	0.952	INTERGENIC
2L	9679130	2L_9679130_SNP [dm3] 2L_9679130_SNP [dm6]	G	A	4.485e^-4	0.952	INTERGENIC
X	13959259	X_13959259_SNP [dm3] X_14065226_SNP [dm6]	C	A	4.490e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12067018	3L_12067018_SNP [dm3] 3L_12073918_SNP [dm6]	A	C	4.500e^-4	0.952	INTRON Sema-5c
X	17025896	X_17025896_INS [dm3] X_17131863_INS [dm6]	T	TA	4.505e^-4	0.952	INTRON CG5004
X	9447098	X_9447098_SNP [dm3] X_9553065_SNP [dm6]	G	T	4.506e^-4	0.952	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	6626282	3L_6626282_SNP [dm3] 3L_6633182_SNP [dm6]	C	A	4.510e^-4	0.952	SYNONYMOUS_CODING GluRIA
3L	2062014	3L_2062014_SNP [dm3] 3L_2062014_SNP [dm6]	C	T	4.511e^-4	0.952	INTRON sls
3R	21455530	3R_21455530_SNP [dm3] 3R_25629808_SNP [dm6]	T	A	4.524e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	26791517	3R_26791517_SNP [dm3] 3R_30965795_SNP [dm6]	A	C	4.530e^-4	0.952	INTERGENIC
X	18924167	X_18924167_SNP [dm3] X_19030134_SNP [dm6]	T	A	4.534e^-4	0.952	INTERGENIC
3R	19233693	3R_19233693_SNP [dm3] 3R_23407971_SNP [dm6]	G	C	4.541e^-4	0.952	DOWNSTREAM Ir94e & 1 other INTERGENIC
2R	12388357	2R_12388357_SNP [dm3] 2R_16500852_SNP [dm6]	C	A	4.543e^-4	0.952	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	19769760	3L_19769760_DEL [dm3] 3L_19776660_DEL [dm6]	GGAACATTAAG...	G	4.550e^-4	0.952	INTRON CG42637 & 1 other
3R	1556719	3R_1556719_SNP [dm3] 3R_5730997_SNP [dm6]	A	G	4.551e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	16061931	2R_16061931_SNP [dm3] 2R_20174426_SNP [dm6]	T	C	4.554e^-4	0.952	INTERGENIC
X	3089562	X_3089562_SNP [dm3] X_3195529_SNP [dm6]	G	A	4.560e^-4	0.952	INTRON dnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11151156	X_11151156_SNP [dm3] X_11257123_SNP [dm6]	T	C	4.563e^-4	0.952	INTRON CG44422
3L	16309826	3L_16309826_SNP [dm3] 3L_16316726_SNP [dm6]	A	G	4.565e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14510579	3L_14510579_SNP [dm3] 3L_14517479_SNP [dm6]	C	T	4.571e^-4	0.952	UPSTREAM CG9592 INTRON bbg
3R	1755865	3R_1755865_SNP [dm3] 3R_5930143_SNP [dm6]	C	T	4.571e^-4	0.952	INTRON CG34113
2R	13345680	2R_13345680_SNP [dm3] 2R_17458175_SNP [dm6]	G	C	4.589e^-4	0.952	UPSTREAM CG14478 INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11127953	3R_11127953_SNP [dm3] 3R_15302231_SNP [dm6]	A	C	4.592e^-4	0.952	INTRON Tm1	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	20363917	2R_20363917_SNP [dm3] 2R_24476394_SNP [dm6]	G	A	4.602e^-4	0.952	DOWNSTREAM CG16837 INTRON CG13579
2R	14663073	2R_14663073_SNP [dm3] 2R_18775568_SNP [dm6]	A	G	4.604e^-4	0.952	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	14453863	X_14453863_SNP [dm3] X_14559830_SNP [dm6]	G	A	4.613e^-4	0.952	INTERGENIC
2R	3975754	2R_3975754_SNP [dm3] 2R_8088249_SNP [dm6]	C	T	4.614e^-4	0.952	NON_SYNONYMOUS_CODING sut2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13325302	3L_13325302_SNP [dm3] 3L_13332202_SNP [dm6]	G	A	4.619e^-4	0.952	INTERGENIC
2L	1481914	2L_1481914_SNP [dm3] 2L_1481914_SNP [dm6]	C	T	4.620e^-4	0.952	INTERGENIC
2R	19343780	2R_19343780_INS [dm3] 2R_23456257_INS [dm6]	C	CATC	4.622e^-4	0.952	UTR_5_PRIME CG43795	TF binding site mE1_TFBS_chinmo
3R	23313224	3R_23313224_SNP [dm3] 3R_27487502_SNP [dm6]	T	C	4.630e^-4	0.952	UPSTREAM Gr98a INTERGENIC
X	13960185	X_13960185_SNP [dm3] X_14066152_SNP [dm6]	T	A	4.634e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17492225	3L_17492225_INS [dm3] 3L_17499125_INS [dm6]	T	TTATTAT	4.640e^-4	0.952	INTRON Oatp74D	TF binding site mE1_TFBS_Trl
3R	14650959	3R_14650959_SNP [dm3] 3R_18825237_SNP [dm6]	A	G	4.646e^-4	0.952	INTRON CG18208
X	20158966	X_20158966_SNP [dm3] X_20287939_SNP [dm6]	A	T	4.657e^-4	0.952	INTERGENIC
2R	14662687	2R_14662687_SNP [dm3] 2R_18775182_SNP [dm6]	T	C	4.662e^-4	0.952	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	5836364	2R_5836364_SNP [dm3] 2R_9948859_SNP [dm6]	G	C	4.663e^-4	0.952	INTRON Mef2
3R	25932756	3R_25932756_SNP [dm3] 3R_30107034_SNP [dm6]	A	T	4.664e^-4	0.952	INTRON sima
2R	18620286	2R_18620286_SNP [dm3] 2R_22732781_SNP [dm6]	A	G	4.669e^-4	0.952	INTRON jbug	TF binding site mE1_TFBS_cad
2L	19757254	2L_19757254_SNP [dm3] 2L_19757254_SNP [dm6]	C	T	4.678e^-4	0.952	UTR_3_PRIME CG10628 UPSTREAM CG10631
2R	12870324	2R_12870324_SNP [dm3] 2R_16982819_SNP [dm6]	A	G	4.681e^-4	0.952	INTRON Cbp53E
2R	20362698	2R_20362698_SNP [dm3] 2R_24475175_SNP [dm6]	T	C	4.682e^-4	0.952	SYNONYMOUS_CODING CG3494 UPSTREAM CG16837 DOWNSTREAM CG3492 INTRON CG13579
3L	19969059	3L_19969059_SNP [dm3] 3L_19975959_SNP [dm6]	G	T	4.689e^-4	0.952	INTRON Ac76E
3R	15753614	3R_15753614_SNP [dm3] 3R_19927892_SNP [dm6]	C	T	4.692e^-4	0.952	SYNONYMOUS_CODING CG4459	TF binding site mE1_TFBS_cad
3L	12751154	3L_12751154_SNP [dm3] 3L_12758054_SNP [dm6]	A	C	4.695e^-4	0.952	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9053529	3L_9053529_SNP [dm3] 3L_9060429_SNP [dm6]	C	G	4.699e^-4	0.952	INTRON Argk
2R	5342725	2R_5342725_SNP [dm3] 2R_9455220_SNP [dm6]	T	C	4.701e^-4	0.952	UPSTREAM CG33757 INTRON Camta
3R	24514206	3R_24514206_SNP [dm3] 3R_28688484_SNP [dm6]	G	T	4.719e^-4	0.952	INTRON CG9990
3R	1713747	3R_1713747_SNP [dm3] 3R_5888025_SNP [dm6]	A	G	4.722e^-4	0.952	INTRON CG34113
X	9476371	X_9476371_SNP [dm3] X_9582338_SNP [dm6]	T	C	4.723e^-4	0.952	UPSTREAM CR45540 INTERGENIC
3L	1798784	3L_1798784_SNP [dm3] 3L_1798784_SNP [dm6]	A	T	4.724e^-4	0.952	UPSTREAM Patj DOWNSTREAM CG12020 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
X	11816548	X_11816548_SNP [dm3] X_11922515_SNP [dm6]	T	A	4.728e^-4	0.952	INTRON Sclp
3R	25204934	3R_25204934_SNP [dm3] 3R_29379212_SNP [dm6]	C	T	4.728e^-4	0.952	INTRON Ptp99A
3R	21889957	3R_21889957_SNP [dm3] 3R_26064235_SNP [dm6]	T	G	4.733e^-4	0.952	INTERGENIC
3L	1483416	3L_1483416_SNP [dm3] 3L_1483416_SNP [dm6]	C	T	4.741e^-4	0.952	INTRON stet	TF binding site mE1_TFBS_cad
3R	4244423	3R_4244423_SNP [dm3] 3R_8418701_SNP [dm6]	T	G	4.741e^-4	0.952	INTRON CG45263
2R	15685766	2R_15685766_SNP [dm3] 2R_19798261_SNP [dm6]	G	A	4.745e^-4	0.952	INTERGENIC
2R	4672313	2R_4672313_SNP [dm3] 2R_8784808_SNP [dm6]	C	A	4.765e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	1777618	3R_1777618_SNP [dm3] 3R_5951896_SNP [dm6]	A	G	4.765e^-4	0.952	INTRON CG34113
3L	18604808	3L_18604808_SNP [dm3] 3L_18611708_SNP [dm6]	A	G	4.767e^-4	0.952	UTR_3_PRIME CG32201 UPSTREAM CG32199 INTRON CG4174 & 1 other
2L	3396541	2L_3396541_SNP [dm3] 2L_3396541_SNP [dm6]	T	A	4.768e^-4	0.952	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18249849	3R_18249849_SNP [dm3] 3R_22424127_SNP [dm6]	T	C	4.778e^-4	0.952	DOWNSTREAM mats INTRON pinta
X	4103549	X_4103549_SNP [dm3] X_4209516_SNP [dm6]	A	G	4.786e^-4	0.952	INTERGENIC
2L	16005416	2L_16005416_SNP [dm3] 2L_16005416_SNP [dm6]	C	T	4.786e^-4	0.952	UTR_3_PRIME CG43816 & 1 other UPSTREAM CR44844 DOWNSTREAM CG31820 INTRON beat-Ic
2R	16013443	2R_16013443_SNP [dm3] 2R_20125938_SNP [dm6]	G	A	4.788e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6545366	X_6545366_SNP [dm3] X_6651333_SNP [dm6]	A	G	4.807e^-4	0.952	UTR_3_PRIME pigs	TF binding site mE1_TFBS_inv
X	8519885	X_8519885_INS [dm3] X_8625852_INS [dm6]	G	GCAGCAG	4.811e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	16622612	3L_16622612_SNP [dm3] 3L_16629512_SNP [dm6]	C	T	4.812e^-4	0.952	INTRON Abl
2R	15681928	2R_15681928_SNP [dm3] 2R_19794423_SNP [dm6]	A	G	4.819e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	20158093	2R_20158093_SNP [dm3] 2R_24270570_SNP [dm6]	C	T	4.824e^-4	0.952	INTERGENIC
2R	14535546	2R_14535546_SNP [dm3] 2R_18648041_SNP [dm6]	T	C	4.840e^-4	0.952	INTRON SP2637	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6086245	3L_6086245_SNP [dm3] 3L_6093145_SNP [dm6]	T	G	4.859e^-4	0.952	UTR_5_PRIME CG10469 DOWNSTREAM CG13293 & 1 other
X	20149989	X_20149989_SNP [dm3] X_20278963_SNP [dm6]	C	T	4.862e^-4	0.952	INTERGENIC
2R	6305134	2R_6305134_SNP [dm3] 2R_10417629_SNP [dm6]	A	C	4.865e^-4	0.952	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	8157917	3L_8157917_SNP [dm3] 3L_8164817_SNP [dm6]	T	A	4.865e^-4	0.952	UPSTREAM CG13675 INTRON CG13675
2R	13834083	2R_13834083_DEL [dm3] 2R_17946578_DEL [dm6]	GATGGGG	G	4.866e^-4	0.952	INTERGENIC
3L	368935	3L_368935_SNP [dm3] 3L_368935_SNP [dm6]	C	A	4.866e^-4	0.952	SYNONYMOUS_CODING trh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1616241	2R_1616241_SNP [dm3] 2R_5728736_SNP [dm6]	A	T	4.869e^-4	0.952	INTERGENIC
3R	23511862	3R_23511862_SNP [dm3] 3R_27686140_SNP [dm6]	A	T	4.870e^-4	0.952	START_GAINED CG12880 UTR_5_PRIME CG12880 UTR_3_PRIME CG31055	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12388334	2R_12388334_SNP [dm3] 2R_16500829_SNP [dm6]	C	G	4.875e^-4	0.952	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15423077	2R_15423077_SNP [dm3] 2R_19535572_SNP [dm6]	C	T	4.876e^-4	0.952	INTRON sm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7034702	3L_7034702_SNP [dm3] 3L_7041602_SNP [dm6]	G	T	4.877e^-4	0.952	INTRON Mp	TF binding site mE1_TFBS_inv
2L	13643354	2L_13643354_SNP [dm3] 2L_13643354_SNP [dm6]	G	A	4.879e^-4	0.952	UPSTREAM ics DOWNSTREAM CR44726 INTERGENIC
X	20159065	X_20159065_SNP [dm3] X_20288038_SNP [dm6]	A	G	4.883e^-4	0.952	INTERGENIC
X	11056255	X_11056255_SNP [dm3] X_11162222_SNP [dm6]	G	T	4.910e^-4	0.952	INTRON Dlic
3R	21889978	3R_21889978_DEL [dm3] 3R_26064256_DEL [dm6]	ATACAT	A	4.910e^-4	0.952	INTERGENIC
3R	13876944	3R_13876944_SNP [dm3] 3R_18051222_SNP [dm6]	T	G	4.911e^-4	0.952	INTRON htl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	21044228	3L_21044228_SNP [dm3] 3L_21051128_SNP [dm6]	G	A	4.919e^-4	0.952	INTRON siz
3R	15752344	3R_15752344_SNP [dm3] 3R_19926622_SNP [dm6]	T	G	4.920e^-4	0.952	SYNONYMOUS_CODING CG4459	TF binding site mE1_TFBS_cad
2R	12388336	2R_12388336_SNP [dm3] 2R_16500831_SNP [dm6]	T	C	4.926e^-4	0.952	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	19264018	2R_19264018_SNP [dm3] 2R_23376495_SNP [dm6]	G	A	4.933e^-4	0.952	INTRON Golgin245	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24555012	3R_24555012_SNP [dm3] 3R_28729290_SNP [dm6]	A	G	4.937e^-4	0.952	INTRON htt
2R	20363008	2R_20363008_SNP [dm3] 2R_24475485_SNP [dm6]	G	A	4.947e^-4	0.952	SYNONYMOUS_CODING CG16837 DOWNSTREAM CG3494 INTRON CG13579
2R	16064233	2R_16064233_SNP [dm3] 2R_20176728_SNP [dm6]	G	A	4.949e^-4	0.952	INTERGENIC
3R	1352108	3R_1352108_DEL [dm3] 3R_5526386_DEL [dm6]	CACATATGTATGC...	C	4.955e^-4	0.952	INTRON Itp-r83A
X	4878193	X_4878193_SNP [dm3] X_4984160_SNP [dm6]	T	C	4.962e^-4	0.952	INTRON CR44833	regulatory region REDfly_CRMs
3L	19511977	3L_19511977_SNP [dm3] 3L_19518877_SNP [dm6]	T	A	4.967e^-4	0.952	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3L	4565617	3L_4565617_SNP [dm3] 3L_4565617_SNP [dm6]	C	A	4.969e^-4	0.952	INTRON CG42540	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15755443	2R_15755443_SNP [dm3] 2R_19867938_SNP [dm6]	G	C	4.978e^-4	0.952	UPSTREAM Obp56i & 1 other INTRON Obp56i
3R	10837555	3R_10837555_SNP [dm3] 3R_15011833_SNP [dm6]	C	T	4.981e^-4	0.952	INTERGENIC
3R	20996684	3R_20996684_SNP [dm3] 3R_25170962_SNP [dm6]	C	T	4.982e^-4	0.952	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6570565	3L_6570565_SNP [dm3] 3L_6577465_SNP [dm6]	T	C	4.988e^-4	0.952	INTRON CG18769 & 1 other
2L	5840861	2L_5840861_SNP [dm3] 2L_5840861_SNP [dm6]	G	A	4.994e^-4	0.952	INTRON TrissinR
2R	20362725	2R_20362725_SNP [dm3] 2R_24475202_SNP [dm6]	A	G	4.996e^-4	0.952	UTR_3_PRIME CG3494 UPSTREAM CG16837 DOWNSTREAM CG3492 INTRON CG13579
2R	18611667	2R_18611667_SNP [dm3] 2R_22724162_SNP [dm6]	A	C	4.998e^-4	0.952	SPLICE_SITE_REGION jbug INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	2380965	3L_2380965_SNP [dm3] 3L_2380965_SNP [dm6]	A	G	4.999e^-4	0.952	INTRON CG45186
3R	21729406	3R_21729406_SNP [dm3] 3R_25903684_SNP [dm6]	A	T	5.000e^-4	0.952	INTRON CR43259 & 1 other
3R	25607204	3R_25607204_SNP [dm3] 3R_29781482_SNP [dm6]	T	A	5.000e^-4	0.952	INTRON kay
2L	16232874	2L_16232874_SNP [dm3] 2L_16232874_SNP [dm6]	T	C	5.014e^-4	0.952	INTRON CG42817
2R	8928517	2R_8928517_SNP [dm3] 2R_13041012_SNP [dm6]	C	T	5.021e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10993028	3L_10993028_SNP [dm3] 3L_10999928_SNP [dm6]	C	G	5.022e^-4	0.952	INTRON klu	TF binding site mE1_TFBS_chinmo
3R	27410925	3R_27410925_SNP [dm3] 3R_31585203_SNP [dm6]	C	G	5.023e^-4	0.952	NON_SYNONYMOUS_CODING rod
3L	9045558	3L_9045558_SNP [dm3] 3L_9052458_SNP [dm6]	A	T	5.026e^-4	0.952	UPSTREAM Argk INTRON Argk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8619173	2L_8619173_INS [dm3] 2L_8619173_INS [dm6]	G	GT	5.031e^-4	0.952	UPSTREAM tRNA:CR31602 INTRON Sema-1a
3R	24607383	3R_24607383_SNP [dm3] 3R_28781661_SNP [dm6]	A	G	5.046e^-4	0.952	INTERGENIC
X	19777515	X_19777515_DEL [dm3] X_19883482_DEL [dm6]	GGGATATACCATACCAGTGG...	G	5.053e^-4	0.952	INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14514370	2R_14514370_SNP [dm3] 2R_18626865_SNP [dm6]	C	T	5.064e^-4	0.952	SYNONYMOUS_CODING Sec6	TF binding site mE1_TFBS_sens
2L	5695699	2L_5695699_SNP [dm3] 2L_5695699_SNP [dm6]	A	G	5.067e^-4	0.952	INTERGENIC
2L	6595841	2L_6595841_SNP [dm3] 2L_6595841_SNP [dm6]	T	A	5.067e^-4	0.952	INTRON CG11319
2L	1944475	2L_1944475_SNP [dm3] 2L_1944475_SNP [dm6]	T	A	5.071e^-4	0.952	DOWNSTREAM CG7337 & 1 other INTERGENIC
X	12161470	X_12161470_SNP [dm3] X_12267437_SNP [dm6]	G	A	5.079e^-4	0.952	INTRON Ten-a
2R	16114626	2R_16114626_SNP [dm3] 2R_20227121_SNP [dm6]	C	T	5.080e^-4	0.952	INTERGENIC
X	13959404	X_13959404_SNP [dm3] X_14065371_SNP [dm6]	G	A	5.086e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13179998	3L_13179998_SNP [dm3] 3L_13186898_SNP [dm6]	T	C	5.086e^-4	0.952	INTERGENIC
3R	1522160	3R_1522160_SNP [dm3] 3R_5696438_SNP [dm6]	T	C	5.088e^-4	0.952	INTRON plx	TF binding site mE1_TFBS_cad
2R	15422395	2R_15422395_SNP [dm3] 2R_19534890_SNP [dm6]	A	G	5.090e^-4	0.952	INTRON sm
3L	1302874	3L_1302874_SNP [dm3] 3L_1302874_SNP [dm6]	C	T	5.090e^-4	0.952	UPSTREAM CG9149 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	13995662	2R_13995662_SNP [dm3] 2R_18108157_SNP [dm6]	G	A	5.096e^-4	0.952	START_GAINED CG5756 UTR_5_PRIME CG5756
2R	6251499	2R_6251499_SNP [dm3] 2R_10363994_SNP [dm6]	C	T	5.106e^-4	0.952	DOWNSTREAM Gr47a INTRON CG42732
3R	17908271	3R_17908271_SNP [dm3] 3R_22082549_SNP [dm6]	T	A	5.115e^-4	0.952	INTRON CG13408
2L	4045845	2L_4045845_SNP [dm3] 2L_4045845_SNP [dm6]	T	A	5.122e^-4	0.952	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7769477	2L_7769477_DEL [dm3] 2L_7769477_DEL [dm6]	TTG	T	5.129e^-4	0.952	INTRON CG7191
2L	2819623	2L_2819623_SNP [dm3] 2L_2819623_SNP [dm6]	G	T	5.135e^-4	0.952	SPLICE_SITE_REGION Duox INTRON Duox	TF binding site mE1_TFBS_cad
2L	13883141	2L_13883141_SNP [dm3] 2L_13883141_SNP [dm6]	T	G	5.135e^-4	0.952	INTRON CenG1A
2R	12445553	2R_12445553_DEL [dm3] 2R_16558048_DEL [dm6]	AA	A	5.143e^-4	0.952	UTR_3_PRIME Syn2 DOWNSTREAM DAT
3R	8051466	3R_8051466_SNP [dm3] 3R_12225744_SNP [dm6]	A	G	5.145e^-4	0.952	SYNONYMOUS_CODING CG12256 UPSTREAM CG17404 EXON CR43477	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11353744	2R_11353744_SNP [dm3] 2R_15466239_SNP [dm6]	C	G	5.152e^-4	0.952	INTRON CG43729
3R	8338130	3R_8338130_SNP [dm3] 3R_12512408_SNP [dm6]	G	C	5.158e^-4	0.952	UTR_3_PRIME Octbeta3R DOWNSTREAM Hsp70Bc	TF binding site mE1_TFBS_cad
3R	25164255	3R_25164255_SNP [dm3] 3R_29338533_SNP [dm6]	T	G	5.162e^-4	0.952	INTERGENIC
3R	21889958	3R_21889958_SNP [dm3] 3R_26064236_SNP [dm6]	A	T	5.167e^-4	0.952	INTERGENIC
3R	20006700	3R_20006700_SNP [dm3] 3R_24180978_SNP [dm6]	C	T	5.169e^-4	0.952	UTR_3_PRIME CG13606 INTRON CG13606
3L	20870020	3L_20870020_SNP [dm3] 3L_20876920_SNP [dm6]	A	T	5.175e^-4	0.952	INTRON CG32432
2L	10699735	2L_10699735_SNP [dm3] 2L_10699735_SNP [dm6]	G	A	5.175e^-4	0.952	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad
3R	22993218	3R_22993218_SNP [dm3] 3R_27167496_SNP [dm6]	G	A	5.176e^-4	0.952	DOWNSTREAM spn-D INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	9154842	3L_9154842_SNP [dm3] 3L_9161742_SNP [dm6]	C	T	5.184e^-4	0.952	INTRON Rdl
2R	11580836	2R_11580836_SNP [dm3] 2R_15693331_SNP [dm6]	T	A	5.189e^-4	0.952	UPSTREAM CG33460 INTRON CG30087 EXON CR44372	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2R	18327046	2R_18327046_SNP [dm3] 2R_22439541_SNP [dm6]	C	T	5.193e^-4	0.952	INTERGENIC
3L	2200836	3L_2200836_SNP [dm3] 3L_2200836_SNP [dm6]	T	A	5.208e^-4	0.952	INTERGENIC
X	4878256	X_4878256_SNP [dm3] X_4984223_SNP [dm6]	G	A	5.209e^-4	0.952	INTRON CR44833	regulatory region REDfly_CRMs
3R	15466753	3R_15466753_SNP [dm3] 3R_19641031_SNP [dm6]	T	C	5.214e^-4	0.952	UTR_5_PRIME subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4997281	2L_4997281_SNP [dm3] 2L_4997281_SNP [dm6]	A	G	5.215e^-4	0.952	UTR_5_PRIME Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2R	13649038	2R_13649038_SNP [dm3] 2R_17761533_SNP [dm6]	A	C	5.216e^-4	0.952	INTRON CG5009	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	7405080	3R_7405080_SNP [dm3] 3R_11579358_SNP [dm6]	A	T	5.223e^-4	0.952	NON_SYNONYMOUS_CODING CG5342 UPSTREAM CG6790
2R	11589995	2R_11589995_SNP [dm3] 2R_15702490_SNP [dm6]	C	G	5.226e^-4	0.952	UPSTREAM CG30080 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8362702	2L_8362702_SNP [dm3] 2L_8362702_SNP [dm6]	G	A	5.232e^-4	0.952	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	7267624	2R_7267624_DEL [dm3] 2R_11380119_DEL [dm6]	CC	G	5.234e^-4	0.952	UPSTREAM Tsp47F DOWNSTREAM Sod3 INTERGENIC
3L	5960247	3L_5960247_SNP [dm3] 3L_5967147_SNP [dm6]	T	A	5.239e^-4	0.952	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3R	23371522	3R_23371522_SNP [dm3] 3R_27545800_SNP [dm6]	A	G	5.240e^-4	0.952	SYNONYMOUS_CODING Gr98c UPSTREAM Gr98d
3R	17908273	3R_17908273_SNP [dm3] 3R_22082551_SNP [dm6]	C	T	5.249e^-4	0.952	INTRON CG13408
3L	962640	3L_962640_SNP [dm3] 3L_962640_SNP [dm6]	G	C	5.253e^-4	0.952	INTRON Glut1
3R	20396647	3R_20396647_SNP [dm3] 3R_24570925_SNP [dm6]	T	A	5.256e^-4	0.952	INTRON CG13624
X	15430863	X_15430863_SNP [dm3] X_15536830_SNP [dm6]	C	T	5.260e^-4	0.952	INTRON Ac13E
X	2891529	X_2891529_SNP [dm3] X_2997496_SNP [dm6]	G	T	5.264e^-4	0.952	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19123768	2R_19123768_SNP [dm3] 2R_23236245_SNP [dm6]	G	T	5.267e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22142836	3R_22142836_DEL [dm3] 3R_26317114_DEL [dm6]	CCTTTCTCGCTC...	C	5.267e^-4	0.952	INTERGENIC
3R	14506416	3R_14506416_SNP [dm3] 3R_18680694_SNP [dm6]	C	T	5.267e^-4	0.952	START_GAINED CG7708 UTR_5_PRIME CG7708 DOWNSTREAM CG7706
3R	17908323	3R_17908323_SNP [dm3] 3R_22082601_SNP [dm6]	T	C	5.268e^-4	0.952	INTRON CG13408
2R	15974327	2R_15974327_SNP [dm3] 2R_20086822_SNP [dm6]	G	A	5.271e^-4	0.952	DOWNSTREAM CR44632 INTERGENIC
2R	14221781	2R_14221781_SNP [dm3] 2R_18334276_SNP [dm6]	C	T	5.286e^-4	0.952	INTRON sbb
3R	24938557	3R_24938557_INS [dm3] 3R_29112835_INS [dm6]	C	CTCTC	5.286e^-4	0.952	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8233374	3R_8233374_SNP [dm3] 3R_12407652_SNP [dm6]	C	G	5.287e^-4	0.952	NON_SYNONYMOUS_CODING CG5167 UPSTREAM CG5196	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12837853	X_12837853_SNP [dm3] X_12943820_SNP [dm6]	T	C	5.292e^-4	0.952	INTRON fne
3R	2143647	3R_2143647_SNP [dm3] 3R_6317925_SNP [dm6]	T	C	5.294e^-4	0.952	SYNONYMOUS_CODING Osi17
X	12451652	X_12451652_SNP [dm3] X_12557619_SNP [dm6]	A	T	5.298e^-4	0.952	INTRON CG43921
X	4508621	X_4508621_DEL [dm3] X_4614588_DEL [dm6]	TA	T	5.303e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
X	18996215	X_18996215_SNP [dm3] X_19102182_SNP [dm6]	T	C	5.307e^-4	0.952	INTERGENIC
2L	13582027	2L_13582027_SNP [dm3] 2L_13582027_SNP [dm6]	T	G	5.309e^-4	0.952	UPSTREAM CR44973 INTRON kuz
2L	14416814	2L_14416814_SNP [dm3] 2L_14416814_SNP [dm6]	A	G	5.315e^-4	0.952	UTR_3_PRIME Pburs
2L	14416818	2L_14416818_SNP [dm3] 2L_14416818_SNP [dm6]	T	C	5.315e^-4	0.952	UTR_3_PRIME Pburs
2L	16504319	2L_16504319_MNP [dm3] 2L_16504319_MNP [dm6]	ATA	CCC	5.316e^-4	0.952	INTRON Tpr2
2R	9375466	2R_9375466_SNP [dm3] 2R_13487961_SNP [dm6]	T	A	5.317e^-4	0.952	INTRON bbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19125018	2R_19125018_SNP [dm3] 2R_23237495_SNP [dm6]	A	T	5.331e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.863e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.0004627
In_3R_K	0.0351298

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	17.7282	0.0001
In_3R_K	8.9358	0.0115

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1742 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	7067893	2L_7067893_SNP [dm3] 2L_7067893_SNP [dm6]	T	G	2.079e^-7	0.39	UPSTREAM CG11289 INTERGENIC
3L	9395701	3L_9395701_SNP [dm3] 3L_9402601_SNP [dm6]	G	A	6.979e^-7	0.573	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16934520	2R_16934520_SNP [dm3] 2R_21047015_SNP [dm6]	T	C	1.906e^-6	0.573	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7068031	2L_7068031_SNP [dm3] 2L_7068031_SNP [dm6]	T	G	2.315e^-6	0.573	NON_SYNONYMOUS_CODING CG11289
3L	9395675	3L_9395675_SNP [dm3] 3L_9402575_SNP [dm6]	G	A	3.224e^-6	0.573	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7068058	2L_7068058_SNP [dm3] 2L_7068058_SNP [dm6]	G	A	3.747e^-6	0.573	NON_SYNONYMOUS_CODING CG11289
2L	7075694	2L_7075694_MNP [dm3] 2L_7075694_MNP [dm6]	TGG	CTA	3.775e^-6	0.573	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9395702	3L_9395702_SNP [dm3] 3L_9402602_SNP [dm6]	C	T	3.900e^-6	0.573	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	16975630	3L_16975630_SNP [dm3] 3L_16982530_SNP [dm6]	T	A	4.239e^-6	0.573	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
3L	9395811	3L_9395811_SNP [dm3] 3L_9402711_SNP [dm6]	G	T	4.384e^-6	0.573	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16934511	2R_16934511_INS [dm3] 2R_21047006_INS [dm6]	C	CA	4.663e^-6	0.573	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9396676	3L_9396676_SNP [dm3] 3L_9403576_SNP [dm6]	G	A	4.839e^-6	0.573	INTERGENIC
2L	3310933	2L_3310933_SNP [dm3] 2L_3310933_SNP [dm6]	A	G	4.947e^-6	0.573	SYNONYMOUS_CODING CG15406 INTRON CG3277	TF binding site mE1_TFBS_cad
3R	9119182	3R_9119182_SNP [dm3] 3R_13293460_SNP [dm6]	A	G	5.038e^-6	0.573	UPSTREAM wntD INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3L	9395676	3L_9395676_SNP [dm3] 3L_9402576_SNP [dm6]	T	C	5.240e^-6	0.573	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16934507	2R_16934507_DEL [dm3] 2R_21047002_DEL [dm6]	AG	A	5.440e^-6	0.573	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13923480	3R_13923480_SNP [dm3] 3R_18097758_SNP [dm6]	T	G	5.584e^-6	0.573	INTRON sr
3L	16975611	3L_16975611_SNP [dm3] 3L_16982511_SNP [dm6]	G	C	5.596e^-6	0.573	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
3L	12003005	3L_12003005_SNP [dm3] 3L_12009905_SNP [dm6]	G	A	5.807e^-6	0.573	SYNONYMOUS_CODING rols	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16934517	2R_16934517_SNP [dm3] 2R_21047012_SNP [dm6]	G	C	6.493e^-6	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5971526	X_5971526_SNP [dm3] X_6077493_SNP [dm6]	G	T	8.167e^-6	0.71	UTR_5_PRIME CG4666
2R	7278737	2R_7278737_SNP [dm3] 2R_11391232_SNP [dm6]	T	G	9.390e^-6	0.71	INTRON sprt
3R	12938497	3R_12938497_SNP [dm3] 3R_17112775_SNP [dm6]	T	C	9.419e^-6	0.71	INTRON cher	TF binding site mE1_TFBS_cnc
3R	9133048	3R_9133048_INS [dm3] 3R_13307326_INS [dm6]	C	CC	9.458e^-6	0.71	INTRON CG32473
2L	6234590	2L_6234590_SNP [dm3] 2L_6234590_SNP [dm6]	A	G	9.459e^-6	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14883273	2R_14883273_SNP [dm3] 2R_18995768_SNP [dm6]	G	A	1.117e^-5	0.801	DOWNSTREAM snoRNA:abba-a INTRON tn
X	18515383	X_18515383_SNP [dm3] X_18621350_SNP [dm6]	A	G	1.196e^-5	0.801	UPSTREAM CR43289 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	18515430	X_18515430_SNP [dm3] X_18621397_SNP [dm6]	G	A	1.196e^-5	0.801	UPSTREAM CR43289 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	13182667	X_13182667_SNP [dm3] X_13288634_SNP [dm6]	T	C	1.365e^-5	0.859	DOWNSTREAM CG15743 INTRON CG15744	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	5838618	2L_5838618_SNP [dm3] 2L_5838618_SNP [dm6]	A	G	1.475e^-5	0.859	INTRON TrissinR
2L	7060783	2L_7060783_SNP [dm3] 2L_7060783_SNP [dm6]	A	C	1.494e^-5	0.859	INTRON Mnn1 & 1 other
2L	7067574	2L_7067574_SNP [dm3] 2L_7067574_SNP [dm6]	A	G	1.530e^-5	0.859	UPSTREAM CG11289 INTERGENIC
3R	12738525	3R_12738525_DEL [dm3] 3R_16912803_DEL [dm6]	AA	A	1.568e^-5	0.859	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
2L	7061538	2L_7061538_SNP [dm3] 2L_7061538_SNP [dm6]	T	A	1.642e^-5	0.859	NON_SYNONYMOUS_CODING Mnn1 UPSTREAM CG31907
3L	9395767	3L_9395767_SNP [dm3] 3L_9402667_SNP [dm6]	A	T	1.696e^-5	0.859	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	8480610	2R_8480610_SNP [dm3] 2R_12593105_SNP [dm6]	A	G	1.706e^-5	0.859	UPSTREAM Amph & 1 other DOWNSTREAM CR45279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23957749	3R_23957749_SNP [dm3] 3R_28132027_SNP [dm6]	T	G	1.720e^-5	0.859	INTERGENIC
3L	1930885	3L_1930885_SNP [dm3] 3L_1930885_SNP [dm6]	C	T	1.739e^-5	0.859	INTRON Dbx
2R	13487738	2R_13487738_SNP [dm3] 2R_17600233_SNP [dm6]	T	C	1.906e^-5	0.917	SYNONYMOUS_CODING lack UPSTREAM CG43920 & 1 other	TF binding site mE1_TFBS_cad
2L	4570446	2L_4570446_SNP [dm3] 2L_4570446_SNP [dm6]	G	C	2.058e^-5	0.965	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9179724	3L_9179724_SNP [dm3] 3L_9186624_SNP [dm6]	G	A	2.131e^-5	0.97	INTERGENIC
2L	4570471	2L_4570471_SNP [dm3] 2L_4570471_SNP [dm6]	T	C	2.221e^-5	0.97	SPLICE_SITE_REGION dp INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4807838	X_4807838_SNP [dm3] X_4913805_SNP [dm6]	A	T	2.274e^-5	0.97	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12938684	3R_12938684_SNP [dm3] 3R_17112962_SNP [dm6]	T	A	2.325e^-5	0.97	INTRON cher	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	22092119	2L_22092119_SNP [dm3] 2L_22092119_SNP [dm6]	T	A	2.340e^-5	0.97	INTERGENIC	transposable element FlyBase
2R	19666706	2R_19666706_SNP [dm3] 2R_23779183_SNP [dm6]	G	A	2.418e^-5	0.97	INTRON CG9850
2L	7061753	2L_7061753_SNP [dm3] 2L_7061753_SNP [dm6]	C	T	2.443e^-5	0.97	UTR_3_PRIME Mnn1 UPSTREAM CG31907
2R	14649714	2R_14649714_SNP [dm3] 2R_18762209_SNP [dm6]	C	T	2.656e^-5	0.97	UTR_5_PRIME Mctp
2R	20263325	2R_20263325_SNP [dm3] 2R_24375802_SNP [dm6]	T	C	2.726e^-5	0.97	INTRON bs	TF binding site mE1_TFBS_chinmo
3L	9395745	3L_9395745_SNP [dm3] 3L_9402645_SNP [dm6]	G	T	2.750e^-5	0.97	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18638178	2R_18638178_DEL [dm3] 2R_22750673_DEL [dm6]	CAG	C	2.810e^-5	0.97	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14883286	2R_14883286_DEL [dm3] 2R_18995781_DEL [dm6]	ATAGGCTTGA	A	2.873e^-5	0.97	DOWNSTREAM snoRNA:abba-a INTRON tn
2R	19669974	2R_19669974_SNP [dm3] 2R_23782451_SNP [dm6]	C	T	2.880e^-5	0.97	INTRON CG9850	TF binding site mE1_TFBS_chinmo
2L	14791494	2L_14791494_SNP [dm3] 2L_14791494_SNP [dm6]	C	A	2.931e^-5	0.97	INTERGENIC
3L	10542483	3L_10542483_SNP [dm3] 3L_10549383_SNP [dm6]	T	G	2.949e^-5	0.97	INTRON A2bp1
3L	9611475	3L_9611475_SNP [dm3] 3L_9618375_SNP [dm6]	A	G	2.951e^-5	0.97	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
2R	13888271	2R_13888271_SNP [dm3] 2R_18000766_SNP [dm6]	A	T	3.002e^-5	0.97	INTRON dpr13
2L	5615775	2L_5615775_SNP [dm3] 2L_5615775_SNP [dm6]	A	C	3.005e^-5	0.97	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	23367216	3R_23367216_SNP [dm3] 3R_27541494_SNP [dm6]	G	A	3.051e^-5	0.97	INTERGENIC
2L	15095483	2L_15095483_SNP [dm3] 2L_15095483_SNP [dm6]	T	G	3.276e^-5	1	INTRON CG15270
3R	12738528	3R_12738528_SNP [dm3] 3R_16912806_SNP [dm6]	T	G	3.396e^-5	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
2R	10897085	2R_10897085_SNP [dm3] 2R_15009580_SNP [dm6]	T	A	3.399e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13683704	2L_13683704_SNP [dm3] 2L_13683704_SNP [dm6]	A	G	3.474e^-5	1	INTRON CG31814
2L	5615771	2L_5615771_SNP [dm3] 2L_5615771_SNP [dm6]	A	T	3.494e^-5	1	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	19666703	2R_19666703_SNP [dm3] 2R_23779180_SNP [dm6]	A	C	3.557e^-5	1	INTRON CG9850
2R	14134799	2R_14134799_SNP [dm3] 2R_18247294_SNP [dm6]	C	T	3.682e^-5	1	UPSTREAM CR44420 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	9395719	3L_9395719_SNP [dm3] 3L_9402619_SNP [dm6]	C	G	3.862e^-5	1	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5615792	2L_5615792_SNP [dm3] 2L_5615792_SNP [dm6]	C	T	3.907e^-5	1	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	9394788	3L_9394788_INS [dm3] 3L_9401688_INS [dm6]	G	GAGACTGCG	3.945e^-5	1	UTR_5_PRIME eIF-4E INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	13241097	X_13241097_SNP [dm3] X_13347064_SNP [dm6]	A	T	4.016e^-5	1	UPSTREAM CR45709 INTERGENIC
3R	24938557	3R_24938557_INS [dm3] 3R_29112835_INS [dm6]	C	CTCTC	4.059e^-5	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5342569	3L_5342569_DEL [dm3] 3L_5349469_DEL [dm6]	AAATA	A	4.152e^-5	1	INTRON lama
3L	9395770	3L_9395770_DEL [dm3] 3L_9402670_DEL [dm6]	TTC	AA	4.234e^-5	1	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8455806	3L_8455806_SNP [dm3] 3L_8462706_SNP [dm6]	A	T	4.239e^-5	1	INTRON Gug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5825743	2L_5825743_INS [dm3] 2L_5825743_INS [dm6]	T	TATGTCCGCAAT...	4.337e^-5	1	INTRON TrissinR
3L	9395698	3L_9395698_SNP [dm3] 3L_9402598_SNP [dm6]	T	G	4.360e^-5	1	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14883606	2R_14883606_SNP [dm3] 2R_18996101_SNP [dm6]	A	T	4.365e^-5	1	INTRON tn
3R	5438822	3R_5438822_SNP [dm3] 3R_9613100_SNP [dm6]	A	T	4.374e^-5	1	INTRON CG8312
X	13292866	X_13292866_SNP [dm3] X_13398833_SNP [dm6]	G	A	4.499e^-5	1	SYNONYMOUS_CODING CG1673
3R	4198842	3R_4198842_SNP [dm3] 3R_8373120_SNP [dm6]	T	C	4.500e^-5	1	INTRON CG45263	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5971713	X_5971713_SNP [dm3] X_6077680_SNP [dm6]	T	G	4.607e^-5	1	UTR_5_PRIME CG4666 UPSTREAM CG4666
2L	7063008	2L_7063008_INS [dm3] 2L_7063008_INS [dm6]	A	AA	4.710e^-5	1	UTR_3_PRIME Mnn1 UPSTREAM Sem1 DOWNSTREAM Mnn1
3R	3185767	3R_3185767_SNP [dm3] 3R_7360045_SNP [dm6]	A	G	4.763e^-5	1	INTERGENIC
2R	18774612	2R_18774612_SNP [dm3] 2R_22887089_SNP [dm6]	C	T	4.848e^-5	1	SYNONYMOUS_CODING asrij UPSTREAM CG3499 DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	3674446	3L_3674446_SNP [dm3] 3L_3674446_SNP [dm6]	T	A	4.871e^-5	1	INTERGENIC
2R	19339263	2R_19339263_DEL [dm3] 2R_23451740_DEL [dm6]	GT	C	4.880e^-5	1	INTRON CG43795
3L	9394998	3L_9394998_SNP [dm3] 3L_9401898_SNP [dm6]	T	A	4.918e^-5	1	UPSTREAM eIF-4E INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8311874	3L_8311874_SNP [dm3] 3L_8318774_SNP [dm6]	A	T	4.921e^-5	1	INTRON CG43059
2L	11813713	2L_11813713_DEL [dm3] 2L_11813713_DEL [dm6]	TT	T	4.931e^-5	1	DOWNSTREAM Pde1c INTRON CycY	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7075702	2L_7075702_SNP [dm3] 2L_7075702_SNP [dm6]	G	A	4.968e^-5	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22900602	3R_22900602_SNP [dm3] 3R_27074880_SNP [dm6]	A	C	4.995e^-5	1	UPSTREAM CG14257 INTERGENIC
2L	12316821	2L_12316821_SNP [dm3] 2L_12316821_SNP [dm6]	C	T	5.007e^-5	1	UPSTREAM CR45282 EXON CR45283
3L	13078882	3L_13078882_SNP [dm3] 3L_13085782_SNP [dm6]	C	T	5.090e^-5	1	DOWNSTREAM CG17300 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	25026741	3R_25026741_SNP [dm3] 3R_29201019_SNP [dm6]	T	C	5.109e^-5	1	SYNONYMOUS_CODING CG11899 DOWNSTREAM Mesh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7733684	X_7733684_DEL [dm3] X_7839651_DEL [dm6]	CC	C	5.116e^-5	1	INTRON CG1402
2L	6581004	2L_6581004_SNP [dm3] 2L_6581004_SNP [dm6]	A	C	5.313e^-5	1	INTRON CG11319
2R	14357361	2R_14357361_SNP [dm3] 2R_18469856_SNP [dm6]	G	A	5.411e^-5	1	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15142226	2R_15142226_SNP [dm3] 2R_19254721_SNP [dm6]	A	T	5.435e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	9999894	2R_9999894_SNP [dm3] 2R_14112389_SNP [dm6]	C	A	5.568e^-5	1	INTRON Prosap
3L	9393181	3L_9393181_SNP [dm3] 3L_9400081_SNP [dm6]	G	T	5.631e^-5	1	UPSTREAM CG4080 INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13241095	X_13241095_SNP [dm3] X_13347062_SNP [dm6]	A	G	5.752e^-5	1	UPSTREAM CR45709 INTERGENIC
2L	8310038	2L_8310038_SNP [dm3] 2L_8310038_SNP [dm6]	A	C	5.906e^-5	1	NON_SYNONYMOUS_CODING CG7810 DOWNSTREAM CG7818	TF binding site mE1_TFBS_sens
2R	18638177	2R_18638177_SNP [dm3] 2R_22750672_SNP [dm6]	A	G	5.910e^-5	1	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9394909	3L_9394909_DEL [dm3] 3L_9401809_DEL [dm6]	TT	T	6.097e^-5	1	UPSTREAM eIF-4E INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	11603559	2R_11603559_SNP [dm3] 2R_15716054_SNP [dm6]	G	A	6.217e^-5	1	INTERGENIC
X	13292899	X_13292899_SNP [dm3] X_13398866_SNP [dm6]	T	C	6.255e^-5	1	SYNONYMOUS_CODING CG1673
2L	10769614	2L_10769614_SNP [dm3] 2L_10769614_SNP [dm6]	G	A	6.480e^-5	1	SPLICE_SITE_REGION CG6724 SYNONYMOUS_CODING CG6724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	4047994	2L_4047994_SNP [dm3] 2L_4047994_SNP [dm6]	T	A	6.485e^-5	1	INTRON ed	TF binding site mE1_TFBS_chinmo
2R	14425021	2R_14425021_SNP [dm3] 2R_18537516_SNP [dm6]	C	G	6.531e^-5	1	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12938488	3R_12938488_SNP [dm3] 3R_17112766_SNP [dm6]	G	C	6.605e^-5	1	INTRON cher	TF binding site mE1_TFBS_cnc
3R	20883899	3R_20883899_SNP [dm3] 3R_25058177_SNP [dm6]	A	G	6.607e^-5	1	UPSTREAM Unc-13-4B INTRON Unc-13-4B
3L	10039147	3L_10039147_INS [dm3] 3L_10046047_INS [dm6]	T	TTT	6.714e^-5	1	INTRON dpr6
2R	14883324	2R_14883324_INS [dm3] 2R_18995819_INS [dm6]	T	TAAT	6.810e^-5	1	DOWNSTREAM snoRNA:abba-a INTRON tn
2L	10770077	2L_10770077_SNP [dm3] 2L_10770077_SNP [dm6]	T	G	6.989e^-5	1	UPSTREAM CG17127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	10770078	2L_10770078_INS [dm3] 2L_10770078_INS [dm6]	G	GTAC	6.989e^-5	1	UPSTREAM CG17127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	5971733	X_5971733_SNP [dm3] X_6077700_SNP [dm6]	C	A	7.001e^-5	1	UTR_5_PRIME CG4666 UPSTREAM CG4666
3R	23318856	3R_23318856_SNP [dm3] 3R_27493134_SNP [dm6]	C	G	7.180e^-5	1	INTERGENIC
2R	18631203	2R_18631203_SNP [dm3] 2R_22743698_SNP [dm6]	C	T	7.208e^-5	1	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9394997	3L_9394997_SNP [dm3] 3L_9401897_SNP [dm6]	G	A	7.325e^-5	1	UPSTREAM eIF-4E INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17025482	3R_17025482_SNP [dm3] 3R_21199760_SNP [dm6]	T	G	7.370e^-5	1	UTR_5_PRIME SNF4Agamma UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21852269	3R_21852269_SNP [dm3] 3R_26026547_SNP [dm6]	A	C	7.383e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	9794775	3R_9794775_SNP [dm3] 3R_13969053_SNP [dm6]	C	T	7.414e^-5	1	UTR_3_PRIME rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	5837955	2L_5837955_SNP [dm3] 2L_5837955_SNP [dm6]	A	T	7.478e^-5	1	INTRON TrissinR
X	13241106	X_13241106_SNP [dm3] X_13347073_SNP [dm6]	C	T	7.552e^-5	1	UPSTREAM CR45709 INTERGENIC
3L	1079442	3L_1079442_INS [dm3] 3L_1079442_INS [dm6]	T	TT	7.569e^-5	1	INTRON bab1
3L	12424968	3L_12424968_SNP [dm3] 3L_12431868_SNP [dm6]	T	A	7.702e^-5	1	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	6395564	3L_6395564_SNP [dm3] 3L_6402464_SNP [dm6]	G	A	7.711e^-5	1	INTRON CG42747
3R	17025786	3R_17025786_SNP [dm3] 3R_21200064_SNP [dm6]	T	G	7.762e^-5	1	UPSTREAM SNF4Agamma INTRON SNF4Agamma
2R	19666643	2R_19666643_SNP [dm3] 2R_23779120_SNP [dm6]	C	A	7.767e^-5	1	INTRON CG9850
2R	14362981	2R_14362981_SNP [dm3] 2R_18475476_SNP [dm6]	A	G	7.767e^-5	1	INTRON CG30116
2R	16806332	2R_16806332_SNP [dm3] 2R_20918827_SNP [dm6]	G	A	7.794e^-5	1	INTRON Rx	TF binding site mE1_TFBS_chinmo
X	15341479	X_15341479_SNP [dm3] X_15447446_SNP [dm6]	C	T	7.843e^-5	1	SYNONYMOUS_CODING Scamp UTR_3_PRIME Scamp
X	12421844	X_12421844_SNP [dm3] X_12527811_SNP [dm6]	A	T	7.886e^-5	1	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
2L	10769800	2L_10769800_SNP [dm3] 2L_10769800_SNP [dm6]	C	T	7.960e^-5	1	UTR_5_PRIME CG6724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	16813657	2L_16813657_SNP [dm3] 2L_16813657_SNP [dm6]	T	C	7.992e^-5	1	SYNONYMOUS_CODING CG13272 INTRON CG13280
3R	17025744	3R_17025744_SNP [dm3] 3R_21200022_SNP [dm6]	T	A	8.056e^-5	1	UPSTREAM SNF4Agamma INTRON SNF4Agamma
3R	17026179	3R_17026179_SNP [dm3] 3R_21200457_SNP [dm6]	A	T	8.059e^-5	1	INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	21428322	X_21428322_INS [dm3] X_21557295_INS [dm6]	A	ATCCAGAA	8.070e^-5	1	INTERGENIC
2R	8480617	2R_8480617_SNP [dm3] 2R_12593112_SNP [dm6]	T	G	8.328e^-5	1	UPSTREAM Amph & 1 other DOWNSTREAM CR45279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10837093	3R_10837093_SNP [dm3] 3R_15011371_SNP [dm6]	C	T	8.347e^-5	1	INTERGENIC
3L	15688754	3L_15688754_SNP [dm3] 3L_15695654_SNP [dm6]	A	G	8.401e^-5	1	INTERGENIC
2L	10770093	2L_10770093_SNP [dm3] 2L_10770093_SNP [dm6]	T	G	8.549e^-5	1	UPSTREAM CG17127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	14792944	X_14792944_SNP [dm3] X_14898911_SNP [dm6]	G	A	8.658e^-5	1	INTRON Flo2
2R	20263303	2R_20263303_SNP [dm3] 2R_24375780_SNP [dm6]	A	G	8.732e^-5	1	INTRON bs	TF binding site mE1_TFBS_chinmo
3L	12539066	3L_12539066_SNP [dm3] 3L_12545966_SNP [dm6]	G	C	8.847e^-5	1	INTRON sowah
3R	26063227	3R_26063227_SNP [dm3] 3R_30237505_SNP [dm6]	T	A	9.015e^-5	1	INTRON CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11663718	2R_11663718_SNP [dm3] 2R_15776213_SNP [dm6]	G	T	9.084e^-5	1	UPSTREAM Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3R	4996216	3R_4996216_SNP [dm3] 3R_9170494_SNP [dm6]	T	C	9.122e^-5	1	INTRON pum
2R	5666304	2R_5666304_SNP [dm3] 2R_9778799_SNP [dm6]	G	A	9.146e^-5	1	INTRON CG1688
3R	8768656	3R_8768656_SNP [dm3] 3R_12942934_SNP [dm6]	A	T	9.205e^-5	1	INTERGENIC
2L	7075701	2L_7075701_SNP [dm3] 2L_7075701_SNP [dm6]	G	A	9.269e^-5	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9395757	3L_9395757_SNP [dm3] 3L_9402657_SNP [dm6]	T	C	9.335e^-5	1	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20263307	2R_20263307_SNP [dm3] 2R_24375784_SNP [dm6]	C	T	9.430e^-5	1	INTRON bs	TF binding site mE1_TFBS_chinmo
2R	20263344	2R_20263344_SNP [dm3] 2R_24375821_SNP [dm6]	C	A	9.430e^-5	1	INTRON bs	TF binding site mE1_TFBS_chinmo
2L	10730142	2L_10730142_SNP [dm3] 2L_10730142_SNP [dm6]	T	C	9.542e^-5	1	SYNONYMOUS_CODING CG6443 UPSTREAM CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1023724	2L_1023724_SNP [dm3] 2L_1023724_SNP [dm6]	C	T	9.655e^-5	1	INTRON IA-2
X	19370386	X_19370386_SNP [dm3] X_19476353_SNP [dm6]	A	G	9.709e^-5	1	DOWNSTREAM CG12200 INTRON CG32533	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9395751	3L_9395751_SNP [dm3] 3L_9402651_SNP [dm6]	C	G	9.716e^-5	1	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5838633	2L_5838633_SNP [dm3] 2L_5838633_SNP [dm6]	A	G	9.724e^-5	1	INTRON TrissinR
2R	16783317	2R_16783317_SNP [dm3] 2R_20895812_SNP [dm6]	A	G	9.795e^-5	1	SYNONYMOUS_CODING otp
3L	3485416	3L_3485416_DEL [dm3] 3L_3485416_DEL [dm6]	CA	C	9.815e^-5	1	UPSTREAM CG43074 & 1 other INTRON CG42324
2R	19666630	2R_19666630_SNP [dm3] 2R_23779107_SNP [dm6]	G	T	1.008e^-4	1	NON_SYNONYMOUS_CODING CG9850
3R	7378244	3R_7378244_SNP [dm3] 3R_11552522_SNP [dm6]	T	A	1.008e^-4	1	INTERGENIC
3L	2098839	3L_2098839_SNP [dm3] 3L_2098839_SNP [dm6]	A	G	1.012e^-4	1	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
3L	1079337	3L_1079337_SNP [dm3] 3L_1079337_SNP [dm6]	A	C	1.016e^-4	1	INTRON bab1
2R	4009254	2R_4009254_SNP [dm3] 2R_8121749_SNP [dm6]	A	T	1.018e^-4	1	INTRON Asap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	3801353	3R_3801353_SNP [dm3] 3R_7975631_SNP [dm6]	T	C	1.027e^-4	1	SYNONYMOUS_CODING CD98hc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7394029	3R_7394029_SNP [dm3] 3R_11568307_SNP [dm6]	G	A	1.030e^-4	1	UPSTREAM Mrp4 INTERGENIC
2L	10769803	2L_10769803_SNP [dm3] 2L_10769803_SNP [dm6]	T	C	1.032e^-4	1	UTR_5_PRIME CG6724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	10769846	2L_10769846_SNP [dm3] 2L_10769846_SNP [dm6]	A	C	1.032e^-4	1	UTR_5_PRIME CG6724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	10769946	2L_10769946_SNP [dm3] 2L_10769946_SNP [dm6]	A	G	1.032e^-4	1	UTR_5_PRIME CG6724 UPSTREAM CG17127	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	1.036e^-4	1	INTRON CR44941
2L	10769790	2L_10769790_SNP [dm3] 2L_10769790_SNP [dm6]	G	A	1.042e^-4	1	UTR_5_PRIME CG6724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	15102673	2L_15102673_SNP [dm3] 2L_15102673_SNP [dm6]	T	C	1.042e^-4	1	INTERGENIC
2L	1996087	2L_1996087_SNP [dm3] 2L_1996087_SNP [dm6]	G	A	1.046e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	3085152	2L_3085152_SNP [dm3] 2L_3085152_SNP [dm6]	C	T	1.048e^-4	1	INTRON toc
2L	10769661	2L_10769661_SNP [dm3] 2L_10769661_SNP [dm6]	A	G	1.051e^-4	1	INTRON CG6724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	20657437	3R_20657437_SNP [dm3] 3R_24831715_SNP [dm6]	G	A	1.059e^-4	1	DOWNSTREAM CG43273 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9566291	3R_9566291_SNP [dm3] 3R_13740569_SNP [dm6]	T	C	1.060e^-4	1	INTRON CG34383
2L	12471144	2L_12471144_SNP [dm3] 2L_12471144_SNP [dm6]	G	A	1.066e^-4	1	INTRON bun
3R	21223474	3R_21223474_SNP [dm3] 3R_25397752_SNP [dm6]	G	T	1.081e^-4	1	DOWNSTREAM Muc96D INTRON Fur1
2L	3085159	2L_3085159_SNP [dm3] 2L_3085159_SNP [dm6]	C	T	1.084e^-4	1	INTRON toc
2R	19666702	2R_19666702_SNP [dm3] 2R_23779179_SNP [dm6]	A	G	1.115e^-4	1	INTRON CG9850
2R	15039854	2R_15039854_SNP [dm3] 2R_19152349_SNP [dm6]	T	G	1.119e^-4	1	INTRON ena
2L	7722670	2L_7722670_SNP [dm3] 2L_7722670_SNP [dm6]	A	G	1.134e^-4	1	UTR_5_PRIME CG13794 DOWNSTREAM CG13795
2L	10769719	2L_10769719_SNP [dm3] 2L_10769719_SNP [dm6]	G	A	1.142e^-4	1	SYNONYMOUS_CODING CG6724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	10769885	2L_10769885_SNP [dm3] 2L_10769885_SNP [dm6]	T	A	1.142e^-4	1	UTR_5_PRIME CG6724 UPSTREAM CG17127	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	9543492	3L_9543492_SNP [dm3] 3L_9550392_SNP [dm6]	C	T	1.149e^-4	1	INTRON CG42673
2L	3382868	2L_3382868_SNP [dm3] 2L_3382868_SNP [dm6]	A	G	1.156e^-4	1	INTERGENIC
2R	16495623	2R_16495623_SNP [dm3] 2R_20608118_SNP [dm6]	C	A	1.158e^-4	1	INTRON Hil	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	6137320	X_6137320_SNP [dm3] X_6243287_SNP [dm6]	T	G	1.174e^-4	1	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5331767	2L_5331767_SNP [dm3] 2L_5331767_SNP [dm6]	A	G	1.189e^-4	1	SYNONYMOUS_CODING fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16150407	3R_16150407_SNP [dm3] 3R_20324685_SNP [dm6]	G	T	1.197e^-4	1	UTR_3_PRIME CG4360 DOWNSTREAM CG42668
3R	16151016	3R_16151016_SNP [dm3] 3R_20325294_SNP [dm6]	T	A	1.197e^-4	1	UTR_3_PRIME CG4360
3R	14832720	3R_14832720_SNP [dm3] 3R_19006998_SNP [dm6]	A	G	1.198e^-4	1	INTRON gukh
2R	9892999	2R_9892999_SNP [dm3] 2R_14005494_SNP [dm6]	A	G	1.200e^-4	1	DOWNSTREAM mir-4978 INTRON mam
2L	10770209	2L_10770209_SNP [dm3] 2L_10770209_SNP [dm6]	A	C	1.206e^-4	1	UPSTREAM CG17127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23367134	3R_23367134_SNP [dm3] 3R_27541412_SNP [dm6]	G	A	1.206e^-4	1	INTERGENIC
3R	21851630	3R_21851630_SNP [dm3] 3R_26025908_SNP [dm6]	T	C	1.223e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	10769796	2L_10769796_SNP [dm3] 2L_10769796_SNP [dm6]	G	A	1.224e^-4	1	UTR_5_PRIME CG6724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	8865764	3R_8865764_SNP [dm3] 3R_13040042_SNP [dm6]	A	C	1.231e^-4	1	NON_SYNONYMOUS_CODING CG11668 DOWNSTREAM snk
3R	20883901	3R_20883901_SNP [dm3] 3R_25058179_SNP [dm6]	G	A	1.232e^-4	1	UPSTREAM Unc-13-4B INTRON Unc-13-4B
3R	17770639	3R_17770639_SNP [dm3] 3R_21944917_SNP [dm6]	T	G	1.247e^-4	1	INTERGENIC
2L	8890810	2L_8890810_SNP [dm3] 2L_8890810_SNP [dm6]	C	T	1.247e^-4	1	UPSTREAM CG42713 INTERGENIC
3L	8362306	3L_8362306_SNP [dm3] 3L_8369206_SNP [dm6]	C	A	1.252e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	6652633	3R_6652633_DEL [dm3] 3R_10826911_DEL [dm6]	TT	T	1.252e^-4	1	UPSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9395707	3L_9395707_SNP [dm3] 3L_9402607_SNP [dm6]	T	C	1.268e^-4	1	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8061395	3L_8061395_DEL [dm3] 3L_8068295_DEL [dm6]	AAAAATC	A	1.274e^-4	1	UPSTREAM tRNA:CR32363 DOWNSTREAM CG42590 INTRON Ect4
3L	6396334	3L_6396334_SNP [dm3] 3L_6403234_SNP [dm6]	G	C	1.281e^-4	1	INTRON CG42747
3L	8851107	3L_8851107_SNP [dm3] 3L_8858007_SNP [dm6]	A	G	1.286e^-4	1	INTRON dally
2R	20262404	2R_20262404_SNP [dm3] 2R_24374881_SNP [dm6]	G	T	1.289e^-4	1	DOWNSTREAM tRNA:N5:60C INTRON bs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10769908	2L_10769908_SNP [dm3] 2L_10769908_SNP [dm6]	T	C	1.290e^-4	1	START_GAINED CG6724 UTR_5_PRIME CG6724 UPSTREAM CG17127	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	8768676	3R_8768676_SNP [dm3] 3R_12942954_SNP [dm6]	G	T	1.292e^-4	1	INTERGENIC
3L	18114323	3L_18114323_SNP [dm3] 3L_18121223_SNP [dm6]	T	C	1.294e^-4	1	SYNONYMOUS_CODING CG42853 DOWNSTREAM CG7341
3L	7379276	3L_7379276_SNP [dm3] 3L_7386176_SNP [dm6]	A	G	1.294e^-4	1	SYNONYMOUS_CODING CG8564 DOWNSTREAM smid	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1908423	2L_1908423_SNP [dm3] 2L_1908423_SNP [dm6]	A	T	1.310e^-4	1	INTRON CG7337	TF binding site mE1_TFBS_HSA
3R	25658304	3R_25658304_SNP [dm3] 3R_29832582_SNP [dm6]	C	T	1.315e^-4	1	INTRON Atg16
3L	6396416	3L_6396416_SNP [dm3] 3L_6403316_SNP [dm6]	G	A	1.343e^-4	1	INTRON CG42747
2R	6365761	2R_6365761_DEL [dm3] 2R_10478256_DEL [dm6]	GC	G	1.347e^-4	1	DOWNSTREAM trsn INTRON whd EXON CR45134	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	9302846	3L_9302846_SNP [dm3] 3L_9309746_SNP [dm6]	C	A	1.366e^-4	1	INTERGENIC
2R	14883600	2R_14883600_SNP [dm3] 2R_18996095_SNP [dm6]	T	A	1.367e^-4	1	INTRON tn
3L	7872210	3L_7872210_SNP [dm3] 3L_7879110_SNP [dm6]	G	A	1.375e^-4	1	INTRON CG32365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17770800	3R_17770800_SNP [dm3] 3R_21945078_SNP [dm6]	T	C	1.375e^-4	1	INTERGENIC
2L	6586717	2L_6586717_SNP [dm3] 2L_6586717_SNP [dm6]	T	C	1.376e^-4	1	UTR_5_PRIME CG11319
3R	25831464	3R_25831464_DEL [dm3] 3R_30005742_DEL [dm6]	TTTT	T	1.381e^-4	1	UPSTREAM CG7911 DOWNSTREAM CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5380173	X_5380173_SNP [dm3] X_5486140_SNP [dm6]	T	C	1.381e^-4	1	INTRON SPR	TF binding site BDTNP1_TFBS_da
2R	10897097	2R_10897097_DEL [dm3] 2R_15009592_DEL [dm6]	TCGCTATAATATACATAT...	T	1.387e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9395768	3L_9395768_SNP [dm3] 3L_9402668_SNP [dm6]	C	G	1.387e^-4	1	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12115371	2R_12115371_SNP [dm3] 2R_16227866_SNP [dm6]	C	A	1.392e^-4	1	NON_SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo
X	3440511	X_3440511_SNP [dm3] X_3546478_SNP [dm6]	C	T	1.399e^-4	1	UPSTREAM CR34335 INTRON CG32791	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13181927	X_13181927_SNP [dm3] X_13287894_SNP [dm6]	T	C	1.400e^-4	1	UPSTREAM CG15744 DOWNSTREAM CG15743 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	2842327	2L_2842327_SNP [dm3] 2L_2842327_SNP [dm6]	A	T	1.402e^-4	1	NON_SYNONYMOUS_CODING CG2975 DOWNSTREAM CG18558
X	9389916	X_9389916_SNP [dm3] X_9495883_SNP [dm6]	A	G	1.410e^-4	1	UTR_5_PRIME mgl INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	9362348	2L_9362348_SNP [dm3] 2L_9362348_SNP [dm6]	A	C	1.416e^-4	1	INTERGENIC
3L	6396925	3L_6396925_SNP [dm3] 3L_6403825_SNP [dm6]	A	T	1.418e^-4	1	INTRON CG42747
3R	23962342	3R_23962342_SNP [dm3] 3R_28136620_SNP [dm6]	G	C	1.423e^-4	1	INTERGENIC
3L	8062489	3L_8062489_SNP [dm3] 3L_8069389_SNP [dm6]	A	T	1.429e^-4	1	UPSTREAM CG42590 DOWNSTREAM CG42591 INTRON Ect4
2R	9138962	2R_9138962_SNP [dm3] 2R_13251457_SNP [dm6]	A	G	1.430e^-4	1	NON_SYNONYMOUS_CODING CG4712 SYNONYMOUS_CODING CG4712 DOWNSTREAM CG4714
3L	6396814	3L_6396814_SNP [dm3] 3L_6403714_SNP [dm6]	T	A	1.430e^-4	1	INTRON CG42747
X	11199373	X_11199373_SNP [dm3] X_11305340_SNP [dm6]	C	T	1.465e^-4	1	INTERGENIC
2L	10770081	2L_10770081_SNP [dm3] 2L_10770081_SNP [dm6]	G	T	1.465e^-4	1	UPSTREAM CG17127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17758184	2R_17758184_SNP [dm3] 2R_21870679_SNP [dm6]	C	A	1.474e^-4	1	INTERGENIC
2L	2612354	2L_2612354_SNP [dm3] 2L_2612354_SNP [dm6]	T	C	1.485e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8717254	2L_8717254_SNP [dm3] 2L_8717254_SNP [dm6]	G	A	1.486e^-4	1	INTRON raw	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	3311162	2L_3311162_SNP [dm3] 2L_3311162_SNP [dm6]	G	C	1.499e^-4	1	SYNONYMOUS_CODING CG15406 INTRON CG3277	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16089733	2L_16089733_SNP [dm3] 2L_16089733_SNP [dm6]	C	T	1.500e^-4	1	INTERGENIC
3R	18603354	3R_18603354_SNP [dm3] 3R_22777632_SNP [dm6]	T	C	1.502e^-4	1	INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_twi
3R	20883893	3R_20883893_SNP [dm3] 3R_25058171_SNP [dm6]	C	A	1.512e^-4	1	UPSTREAM Unc-13-4B INTRON Unc-13-4B
3L	10119278	3L_10119278_SNP [dm3] 3L_10126178_SNP [dm6]	G	A	1.514e^-4	1	INTRON dpr6
2L	1907948	2L_1907948_SNP [dm3] 2L_1907948_SNP [dm6]	T	C	1.515e^-4	1	INTRON CG7337
2L	3947252	2L_3947252_SNP [dm3] 2L_3947252_SNP [dm6]	G	T	1.528e^-4	1	INTRON fred
3R	7379740	3R_7379740_SNP [dm3] 3R_11554018_SNP [dm6]	T	A	1.529e^-4	1	UPSTREAM CG14708 INTERGENIC
3L	6562922	3L_6562922_SNP [dm3] 3L_6569822_SNP [dm6]	A	G	1.534e^-4	1	INTRON CG18769 & 1 other
X	11578971	X_11578971_SNP [dm3] X_11684938_SNP [dm6]	A	T	1.544e^-4	1	INTRON bif
3R	1742137	3R_1742137_SNP [dm3] 3R_5916415_SNP [dm6]	A	G	1.550e^-4	1	INTRON CG34113
3L	2897216	3L_2897216_INS [dm3] 3L_2897216_INS [dm6]	A	AA	1.555e^-4	1	INTRON Shab	TF binding site mE1_TFBS_Trl
3R	23952187	3R_23952187_SNP [dm3] 3R_28126465_SNP [dm6]	T	C	1.571e^-4	1	INTERGENIC
3L	2900053	3L_2900053_SNP [dm3] 3L_2900053_SNP [dm6]	G	T	1.576e^-4	1	INTRON Shab
3R	20524258	3R_20524258_SNP [dm3] 3R_24698536_SNP [dm6]	T	C	1.577e^-4	1	INTRON slo
3R	10192037	3R_10192037_SNP [dm3] 3R_14366315_SNP [dm6]	G	A	1.581e^-4	1	INTRON NK7.1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
3L	8861905	3L_8861905_SNP [dm3] 3L_8868805_SNP [dm6]	G	C	1.588e^-4	1	INTRON dally
3L	9395763	3L_9395763_SNP [dm3] 3L_9402663_SNP [dm6]	T	G	1.589e^-4	1	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13237507	2L_13237507_SNP [dm3] 2L_13237507_SNP [dm6]	T	G	1.593e^-4	1	INTRON CG5867
3L	18534253	3L_18534253_INS [dm3] 3L_18541153_INS [dm6]	C	CC	1.605e^-4	1	INTERGENIC
3R	8985170	3R_8985170_SNP [dm3] 3R_13159448_SNP [dm6]	T	C	1.605e^-4	1	INTRON timeout
2R	15677314	2R_15677314_SNP [dm3] 2R_19789809_SNP [dm6]	T	C	1.606e^-4	1	DOWNSTREAM CR45231 INTERGENIC
3L	18911661	3L_18911661_SNP [dm3] 3L_18918561_SNP [dm6]	G	A	1.622e^-4	1	SYNONYMOUS_CODING CG6839 DOWNSTREAM CG18223	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7106235	2R_7106235_SNP [dm3] 2R_11218730_SNP [dm6]	A	T	1.624e^-4	1	UPSTREAM Syx6 INTRON CG9084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1291983	2L_1291983_SNP [dm3] 2L_1291983_SNP [dm6]	C	A	1.628e^-4	1	INTRON robo3
2L	11404797	2L_11404797_SNP [dm3] 2L_11404797_SNP [dm6]	A	G	1.633e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	13631696	2L_13631696_DEL [dm3] 2L_13631696_DEL [dm6]	TCGTTCATTCGTGTT...	T	1.636e^-4	1	DOWNSTREAM CR43410 INTRON kuz
2R	13486915	2R_13486915_SNP [dm3] 2R_17599410_SNP [dm6]	A	G	1.647e^-4	1	SYNONYMOUS_CODING CG42649 UPSTREAM CG43920 INTRON lack
3L	12424956	3L_12424956_SNP [dm3] 3L_12431856_SNP [dm6]	C	A	1.650e^-4	1	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	18446528	X_18446528_SNP [dm3] X_18552495_SNP [dm6]	C	G	1.658e^-4	1	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25096047	3R_25096047_SNP [dm3] 3R_29270325_SNP [dm6]	T	G	1.664e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19258832	3R_19258832_DEL [dm3] 3R_23433110_DEL [dm6]	TT	T	1.667e^-4	1	INTRON CG4374
3L	8861796	3L_8861796_SNP [dm3] 3L_8868696_SNP [dm6]	G	A	1.668e^-4	1	INTRON dally
2L	4570460	2L_4570460_SNP [dm3] 2L_4570460_SNP [dm6]	A	T	1.670e^-4	1	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18774566	2R_18774566_SNP [dm3] 2R_22887043_SNP [dm6]	T	G	1.680e^-4	1	SYNONYMOUS_CODING asrij UPSTREAM CG3499 DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	10770055	2L_10770055_SNP [dm3] 2L_10770055_SNP [dm6]	G	A	1.690e^-4	1	UPSTREAM CG17127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	10037525	3R_10037525_SNP [dm3] 3R_14211803_SNP [dm6]	C	G	1.707e^-4	1	INTRON Dop1R1
2L	9825805	2L_9825805_SNP [dm3] 2L_9825805_SNP [dm6]	G	A	1.708e^-4	1	INTRON nAChRalpha6
X	17654512	X_17654512_SNP [dm3] X_17760479_SNP [dm6]	C	T	1.710e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20263387	2R_20263387_SNP [dm3] 2R_24375864_SNP [dm6]	A	G	1.711e^-4	1	SYNONYMOUS_CODING bs	TF binding site mE1_TFBS_chinmo
3L	2359671	3L_2359671_SNP [dm3] 3L_2359671_SNP [dm6]	C	A	1.711e^-4	1	UPSTREAM CG13801 INTERGENIC
3L	6396908	3L_6396908_SNP [dm3] 3L_6403808_SNP [dm6]	T	A	1.730e^-4	1	INTRON CG42747
3R	7101213	3R_7101213_SNP [dm3] 3R_11275491_SNP [dm6]	A	T	1.742e^-4	1	INTRON CR31386
X	6294768	X_6294768_SNP [dm3] X_6400735_SNP [dm6]	G	A	1.744e^-4	1	UPSTREAM CG33669 INTERGENIC
3R	5000954	3R_5000954_DEL [dm3] 3R_9175232_DEL [dm6]	AA	A	1.744e^-4	1	INTRON pum
X	14363518	X_14363518_SNP [dm3] X_14469485_SNP [dm6]	T	C	1.746e^-4	1	INTERGENIC
2L	7075869	2L_7075869_SNP [dm3] 2L_7075869_SNP [dm6]	T	A	1.748e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16751460	X_16751460_SNP [dm3] X_16857427_SNP [dm6]	T	C	1.769e^-4	1	INTRON CG13003
2L	15400980	2L_15400980_SNP [dm3] 2L_15400980_SNP [dm6]	A	G	1.769e^-4	1	UPSTREAM CR45374 INTERGENIC
2L	5595878	2L_5595878_SNP [dm3] 2L_5595878_SNP [dm6]	G	A	1.775e^-4	1	UPSTREAM CG18266 INTERGENIC
3L	18560539	3L_18560539_SNP [dm3] 3L_18567439_SNP [dm6]	G	A	1.778e^-4	1	INTRON AstC-R1
3R	2767568	3R_2767568_SNP [dm3] 3R_6941846_SNP [dm6]	C	T	1.782e^-4	1	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16491408	2L_16491408_SNP [dm3] 2L_16491408_SNP [dm6]	C	T	1.782e^-4	1	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2R	11604500	2R_11604500_SNP [dm3] 2R_15716995_SNP [dm6]	G	T	1.786e^-4	1	INTERGENIC
3R	8076537	3R_8076537_SNP [dm3] 3R_12250815_SNP [dm6]	G	C	1.788e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18099093	3L_18099093_SNP [dm3] 3L_18105993_SNP [dm6]	A	T	1.789e^-4	1	UTR_5_PRIME CG13698 UPSTREAM mRpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6801259	2R_6801259_SNP [dm3] 2R_10913754_SNP [dm6]	A	G	1.801e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7413339	3L_7413339_SNP [dm3] 3L_7420239_SNP [dm6]	A	C	1.817e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16755830	X_16755830_SNP [dm3] X_16861797_SNP [dm6]	T	G	1.817e^-4	1	INTRON CG13003
2L	2839108	2L_2839108_SNP [dm3] 2L_2839108_SNP [dm6]	C	T	1.821e^-4	1	SYNONYMOUS_CODING Cpr23B DOWNSTREAM CR45342	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6396438	3L_6396438_SNP [dm3] 3L_6403338_SNP [dm6]	G	C	1.822e^-4	1	INTRON CG42747
2L	10770104	2L_10770104_SNP [dm3] 2L_10770104_SNP [dm6]	A	T	1.830e^-4	1	UPSTREAM CG17127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20569656	3R_20569656_DEL [dm3] 3R_24743934_DEL [dm6]	TT	T	1.834e^-4	1	INTRON tok	TF binding site mE1_TFBS_cad
3L	7379357	3L_7379357_SNP [dm3] 3L_7386257_SNP [dm6]	T	C	1.842e^-4	1	SYNONYMOUS_CODING CG8564 DOWNSTREAM smid	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9136097	2R_9136097_SNP [dm3] 2R_13248592_SNP [dm6]	T	A	1.842e^-4	1	DOWNSTREAM Mp20 & 1 other INTRON Mp20
2L	7047939	2L_7047939_SNP [dm3] 2L_7047939_SNP [dm6]	T	C	1.842e^-4	1	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb mE1_TFBS_cad
2R	14765726	2R_14765726_SNP [dm3] 2R_18878221_SNP [dm6]	T	A	1.845e^-4	1	UPSTREAM sano INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10111671	2L_10111671_SNP [dm3] 2L_10111671_SNP [dm6]	T	C	1.856e^-4	1	INTRON CG44153 & 1 other
2R	10337917	2R_10337917_SNP [dm3] 2R_14450412_SNP [dm6]	A	T	1.868e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	1075474	2L_1075474_SNP [dm3] 2L_1075474_SNP [dm6]	C	A	1.877e^-4	1	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	19666645	2R_19666645_SNP [dm3] 2R_23779122_SNP [dm6]	G	A	1.878e^-4	1	INTRON CG9850
3L	3643689	3L_3643689_SNP [dm3] 3L_3643689_SNP [dm6]	T	A	1.879e^-4	1	INTRON dar1
3L	6589159	3L_6589159_SNP [dm3] 3L_6596059_SNP [dm6]	C	G	1.879e^-4	1	SYNONYMOUS_CODING ndl
X	3799207	X_3799207_INS [dm3] X_3905174_INS [dm6]	T	TT	1.884e^-4	1	INTRON CG42541
3R	24938589	3R_24938589_SNP [dm3] 3R_29112867_SNP [dm6]	A	C	1.889e^-4	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7803614	2L_7803614_SNP [dm3] 2L_7803614_SNP [dm6]	G	C	1.899e^-4	1	UTR_3_PRIME cdc14 DOWNSTREAM cdc14 INTRON cdc14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17754736	3R_17754736_SNP [dm3] 3R_21929014_SNP [dm6]	T	A	1.903e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	9393298	3L_9393298_SNP [dm3] 3L_9400198_SNP [dm6]	C	A	1.913e^-4	1	UPSTREAM CG4080 INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6666722	2R_6666722_SNP [dm3] 2R_10779217_SNP [dm6]	T	A	1.915e^-4	1	INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	7075777	2L_7075777_SNP [dm3] 2L_7075777_SNP [dm6]	C	T	1.937e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15142113	2R_15142113_SNP [dm3] 2R_19254608_SNP [dm6]	T	A	1.958e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	10769506	2L_10769506_SNP [dm3] 2L_10769506_SNP [dm6]	C	A	1.966e^-4	1	SYNONYMOUS_CODING CG6724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	19246030	2R_19246030_SNP [dm3] 2R_23358507_SNP [dm6]	T	A	1.970e^-4	1	UTR_3_PRIME CG9875 UPSTREAM CG3500 & 2 others DOWNSTREAM CG9875 EXON CR44168
3R	7765178	3R_7765178_SNP [dm3] 3R_11939456_SNP [dm6]	T	A	1.971e^-4	1	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi
2L	15402020	2L_15402020_SNP [dm3] 2L_15402020_SNP [dm6]	A	G	1.980e^-4	1	INTERGENIC
3L	9633362	3L_9633362_SNP [dm3] 3L_9640262_SNP [dm6]	A	G	1.982e^-4	1	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9136867	2R_9136867_SNP [dm3] 2R_13249362_SNP [dm6]	A	C	1.992e^-4	1	DOWNSTREAM Mp20 INTRON CG4712
2R	5334094	2R_5334094_SNP [dm3] 2R_9446589_SNP [dm6]	G	T	1.996e^-4	1	UPSTREAM CR45321 INTRON Camta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10210507	X_10210507_SNP [dm3] X_10316474_SNP [dm6]	T	G	2.002e^-4	1	INTRON alpha-Man-I
2L	1628272	2L_1628272_SNP [dm3] 2L_1628272_SNP [dm6]	A	T	2.003e^-4	1	INTERGENIC
X	17536311	X_17536311_SNP [dm3] X_17642278_SNP [dm6]	C	A	2.009e^-4	1	INTRON RhoGAPp190	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	7376169	3R_7376169_SNP [dm3] 3R_11550447_SNP [dm6]	G	A	2.023e^-4	1	INTERGENIC
3L	18259268	3L_18259268_SNP [dm3] 3L_18266168_SNP [dm6]	G	A	2.028e^-4	1	INTERGENIC
2L	15747130	2L_15747130_SNP [dm3] 2L_15747130_SNP [dm6]	C	T	2.036e^-4	1	UPSTREAM CycE & 1 other DOWNSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8268705	2L_8268705_SNP [dm3] 2L_8268705_SNP [dm6]	C	T	2.037e^-4	1	INTRON Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6801260	2R_6801260_SNP [dm3] 2R_10913755_SNP [dm6]	T	C	2.041e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	20263327	2R_20263327_SNP [dm3] 2R_24375804_SNP [dm6]	T	C	2.048e^-4	1	INTRON bs	TF binding site mE1_TFBS_chinmo
3R	10360604	3R_10360604_SNP [dm3] 3R_14534882_SNP [dm6]	G	A	2.050e^-4	1	INTRON Pde6
3R	20215264	3R_20215264_SNP [dm3] 3R_24389542_SNP [dm6]	A	T	2.061e^-4	1	INTRON CG5768
2L	7758542	2L_7758542_SNP [dm3] 2L_7758542_SNP [dm6]	A	C	2.077e^-4	1	INTRON CG7196
2L	3930729	2L_3930729_SNP [dm3] 2L_3930729_SNP [dm6]	A	G	2.092e^-4	1	INTRON fred
3L	9611493	3L_9611493_SNP [dm3] 3L_9618393_SNP [dm6]	G	A	2.094e^-4	1	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
3R	23366831	3R_23366831_SNP [dm3] 3R_27541109_SNP [dm6]	A	C	2.103e^-4	1	INTERGENIC
2L	15402208	2L_15402208_SNP [dm3] 2L_15402208_SNP [dm6]	G	A	2.103e^-4	1	INTERGENIC
3R	13851637	3R_13851637_SNP [dm3] 3R_18025915_SNP [dm6]	T	A	2.107e^-4	1	DOWNSTREAM CG7794 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4009459	2R_4009459_SNP [dm3] 2R_8121954_SNP [dm6]	A	G	2.112e^-4	1	INTRON Asap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	6090694	3R_6090694_SNP [dm3] 3R_10264972_SNP [dm6]	C	T	2.116e^-4	1	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	22885550	3R_22885550_SNP [dm3] 3R_27059828_SNP [dm6]	C	A	2.118e^-4	1	SYNONYMOUS_CODING Nep5
2L	7061147	2L_7061147_DEL [dm3] 2L_7061147_DEL [dm6]	ACAGCAA	A	2.120e^-4	1	UPSTREAM CG31907
3L	18553109	3L_18553109_SNP [dm3] 3L_18560009_SNP [dm6]	C	G	2.120e^-4	1	UPSTREAM AstC-R1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18259341	3L_18259341_SNP [dm3] 3L_18266241_SNP [dm6]	T	G	2.122e^-4	1	INTERGENIC
3L	1903062	3L_1903062_SNP [dm3] 3L_1903062_SNP [dm6]	C	G	2.138e^-4	1	INTRON CG1887	TF binding site mE1_TFBS_inv
2R	17788363	2R_17788363_DEL [dm3] 2R_21900858_DEL [dm6]	ATACAAATTTGTGAACAGAA...	A	2.146e^-4	1	INTRON Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6389995	3L_6389995_SNP [dm3] 3L_6396895_SNP [dm6]	T	C	2.147e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	9135309	3L_9135309_SNP [dm3] 3L_9142209_SNP [dm6]	T	A	2.150e^-4	1	DOWNSTREAM nwk INTRON nwk
3R	15799549	3R_15799549_SNP [dm3] 3R_19973827_SNP [dm6]	T	A	2.150e^-4	1	NON_SYNONYMOUS_CODING CG31213 INTRON Hs6st
2R	10337921	2R_10337921_SNP [dm3] 2R_14450416_SNP [dm6]	A	T	2.154e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	17747224	2L_17747224_SNP [dm3] 2L_17747224_SNP [dm6]	A	T	2.160e^-4	1	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	3011895	2L_3011895_SNP [dm3] 2L_3011895_SNP [dm6]	T	A	2.160e^-4	1	INTRON CG17265	TF binding site mE1_TFBS_inv
2L	1291837	2L_1291837_SNP [dm3] 2L_1291837_SNP [dm6]	G	C	2.165e^-4	1	INTRON robo3
X	8628336	X_8628336_SNP [dm3] X_8734303_SNP [dm6]	A	G	2.166e^-4	1	INTERGENIC
2R	14363162	2R_14363162_SNP [dm3] 2R_18475657_SNP [dm6]	C	A	2.167e^-4	1	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_HSA
3L	9232101	3L_9232101_INS [dm3] 3L_9239001_INS [dm6]	A	AA	2.169e^-4	1	INTERGENIC
X	4508010	X_4508010_SNP [dm3] X_4613977_SNP [dm6]	C	A	2.178e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12316820	2L_12316820_SNP [dm3] 2L_12316820_SNP [dm6]	G	A	2.185e^-4	1	UPSTREAM CR45282 EXON CR45283
2R	20262676	2R_20262676_SNP [dm3] 2R_24375153_SNP [dm6]	A	G	2.188e^-4	1	INTRON bs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17975749	2R_17975749_SNP [dm3] 2R_22088244_SNP [dm6]	T	C	2.190e^-4	1	UPSTREAM CG13502 INTRON CG13502
X	19544710	X_19544710_SNP [dm3] X_19650677_SNP [dm6]	G	A	2.190e^-4	1	SYNONYMOUS_CODING Ranbp21	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	16889834	3L_16889834_SNP [dm3] 3L_16896734_SNP [dm6]	T	G	2.191e^-4	1	INTRON Lmpt	TF binding site mE1_TFBS_chinmo
2R	20263207	2R_20263207_SNP [dm3] 2R_24375684_SNP [dm6]	C	A	2.193e^-4	1	SYNONYMOUS_CODING bs	TF binding site mE1_TFBS_chinmo
2R	18774560	2R_18774560_SNP [dm3] 2R_22887037_SNP [dm6]	T	C	2.194e^-4	1	SYNONYMOUS_CODING asrij UPSTREAM CG3499 DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	20375725	3R_20375725_INS [dm3] 3R_24550003_INS [dm6]	G	GG	2.195e^-4	1	INTRON Esyt2
2R	7106250	2R_7106250_SNP [dm3] 2R_11218745_SNP [dm6]	T	A	2.199e^-4	1	UPSTREAM Syx6 INTRON CG9084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10337913	2R_10337913_SNP [dm3] 2R_14450408_SNP [dm6]	A	T	2.203e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	10008429	2L_10008429_INS [dm3] 2L_10008429_INS [dm6]	T	AA	2.204e^-4	1	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
2L	8718718	2L_8718718_SNP [dm3] 2L_8718718_SNP [dm6]	G	A	2.205e^-4	1	INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19452151	2R_19452151_SNP [dm3] 2R_23564628_SNP [dm6]	C	T	2.210e^-4	1	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18916709	2R_18916709_SNP [dm3] 2R_23029186_SNP [dm6]	G	T	2.211e^-4	1	INTRON twi & 1 other
2R	10337932	2R_10337932_SNP [dm3] 2R_14450427_SNP [dm6]	A	T	2.220e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_cad
2R	10172463	2R_10172463_SNP [dm3] 2R_14284958_SNP [dm6]	A	G	2.224e^-4	1	INTRON Ih	TF binding site mE1_TFBS_cad
3L	1946738	3L_1946738_SNP [dm3] 3L_1946738_SNP [dm6]	G	A	2.228e^-4	1	SYNONYMOUS_CODING mu2 UPSTREAM Cnb	TF binding site mE1_TFBS_sens
3R	25913423	3R_25913423_SNP [dm3] 3R_30087701_SNP [dm6]	A	G	2.236e^-4	1	INTRON sima
2L	3011718	2L_3011718_SNP [dm3] 2L_3011718_SNP [dm6]	C	G	2.240e^-4	1	INTRON CG17265
2R	9139044	2R_9139044_SNP [dm3] 2R_13251539_SNP [dm6]	C	T	2.264e^-4	1	SYNONYMOUS_CODING CG4712 UTR_5_PRIME CG4712 DOWNSTREAM CG4714
X	14753689	X_14753689_SNP [dm3] X_14859656_SNP [dm6]	T	C	2.271e^-4	1	INTRON Flo2
3R	20657432	3R_20657432_SNP [dm3] 3R_24831710_SNP [dm6]	T	C	2.273e^-4	1	DOWNSTREAM CG43273 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20657435	3R_20657435_SNP [dm3] 3R_24831713_SNP [dm6]	A	T	2.273e^-4	1	DOWNSTREAM CG43273 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21672771	3R_21672771_SNP [dm3] 3R_25847049_SNP [dm6]	C	A	2.295e^-4	1	DOWNSTREAM CR45656 & 1 other EXON CR45655
2L	1952064	2L_1952064_SNP [dm3] 2L_1952064_SNP [dm6]	T	C	2.303e^-4	1	SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8654661	2L_8654661_DEL [dm3] 2L_8654661_DEL [dm6]	AGGACACTA	A	2.306e^-4	1	INTRON Sema-1a
X	5039294	X_5039294_SNP [dm3] X_5145261_SNP [dm6]	C	G	2.308e^-4	1	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
X	13182675	X_13182675_SNP [dm3] X_13288642_SNP [dm6]	T	C	2.314e^-4	1	DOWNSTREAM CG15743 INTRON CG15744	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	9390740	3L_9390740_SNP [dm3] 3L_9397640_SNP [dm6]	C	T	2.322e^-4	1	INTRON CG4080	TF binding site BDTNP1_TFBS_dl
3R	7405080	3R_7405080_SNP [dm3] 3R_11579358_SNP [dm6]	A	T	2.324e^-4	1	NON_SYNONYMOUS_CODING CG5342 UPSTREAM CG6790
2L	7060903	2L_7060903_SNP [dm3] 2L_7060903_SNP [dm6]	A	C	2.325e^-4	1	UPSTREAM CG31907 INTRON Mnn1
3L	18555822	3L_18555822_SNP [dm3] 3L_18562722_SNP [dm6]	A	G	2.333e^-4	1	INTRON AstC-R1
3L	12633969	3L_12633969_SNP [dm3] 3L_12640869_SNP [dm6]	A	T	2.338e^-4	1	INTRON CR32111
2R	4694498	2R_4694498_SNP [dm3] 2R_8806993_SNP [dm6]	T	A	2.339e^-4	1	INTRON sns
3L	2313500	3L_2313500_SNP [dm3] 3L_2313500_SNP [dm6]	G	C	2.341e^-4	1	INTERGENIC
3L	19969059	3L_19969059_SNP [dm3] 3L_19975959_SNP [dm6]	G	T	2.342e^-4	1	INTRON Ac76E
2L	9534643	2L_9534643_SNP [dm3] 2L_9534643_SNP [dm6]	A	G	2.344e^-4	1	UPSTREAM Oatp30B INTRON Oatp30B	TF binding site mE1_TFBS_chinmo
3R	8985107	3R_8985107_SNP [dm3] 3R_13159385_SNP [dm6]	T	C	2.344e^-4	1	INTRON timeout
2L	8897271	2L_8897271_INS [dm3] 2L_8897271_INS [dm6]	A	AT	2.345e^-4	1	INTERGENIC
3L	12759724	3L_12759724_SNP [dm3] 3L_12766624_SNP [dm6]	T	C	2.353e^-4	1	SPLICE_SITE_REGION CG32113 SYNONYMOUS_CODING CG32113
2L	7075801	2L_7075801_SNP [dm3] 2L_7075801_SNP [dm6]	G	T	2.355e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7075806	2L_7075806_SNP [dm3] 2L_7075806_SNP [dm6]	T	C	2.355e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11430079	2L_11430079_SNP [dm3] 2L_11430079_SNP [dm6]	T	A	2.360e^-4	1	INTERGENIC
2R	9892970	2R_9892970_SNP [dm3] 2R_14005465_SNP [dm6]	A	G	2.360e^-4	1	DOWNSTREAM mir-4978 INTRON mam
3R	25435938	3R_25435938_SNP [dm3] 3R_29610216_SNP [dm6]	C	T	2.373e^-4	1	INTRON alph	TF binding site mE1_TFBS_chinmo
2L	11430020	2L_11430020_SNP [dm3] 2L_11430020_SNP [dm6]	C	G	2.382e^-4	1	INTERGENIC
3R	17754733	3R_17754733_SNP [dm3] 3R_21929011_SNP [dm6]	G	C	2.388e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	5408350	2L_5408350_SNP [dm3] 2L_5408350_SNP [dm6]	G	A	2.390e^-4	1	INTRON H15	TF binding site mE1_TFBS_cad
2R	17786585	2R_17786585_SNP [dm3] 2R_21899080_SNP [dm6]	C	T	2.395e^-4	1	INTRON Fili
3R	25829675	3R_25829675_SNP [dm3] 3R_30003953_SNP [dm6]	A	T	2.396e^-4	1	UPSTREAM Nlp DOWNSTREAM Tace INTRON CG7911	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	1305552	2L_1305552_SNP [dm3] 2L_1305552_SNP [dm6]	T	C	2.401e^-4	1	INTERGENIC
X	17654508	X_17654508_SNP [dm3] X_17760475_SNP [dm6]	G	T	2.413e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6717924	2R_6717924_SNP [dm3] 2R_10830419_SNP [dm6]	G	A	2.415e^-4	1	INTRON CG12344	TF binding site BDTNP1_TFBS_twi
3L	12472021	3L_12472021_SNP [dm3] 3L_12478921_SNP [dm6]	G	T	2.417e^-4	1	INTRON CG10663
2R	18698293	2R_18698293_SNP [dm3] 2R_22810788_SNP [dm6]	G	T	2.417e^-4	1	INTRON stl
2L	3310900	2L_3310900_SNP [dm3] 2L_3310900_SNP [dm6]	C	G	2.424e^-4	1	NON_SYNONYMOUS_CODING CG15406 INTRON CG3277	TF binding site mE1_TFBS_cad
2L	7454358	2L_7454358_SNP [dm3] 2L_7454358_SNP [dm6]	G	A	2.425e^-4	1	UPSTREAM Gr28a DOWNSTREAM Gr28b INTERGENIC
2L	13582027	2L_13582027_SNP [dm3] 2L_13582027_SNP [dm6]	T	G	2.427e^-4	1	UPSTREAM CR44973 INTRON kuz
3L	7413362	3L_7413362_SNP [dm3] 3L_7420262_SNP [dm6]	G	A	2.429e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1731038	3L_1731038_SNP [dm3] 3L_1731038_SNP [dm6]	C	T	2.434e^-4	1	UTR_5_PRIME drpr UTR_3_PRIME Oseg4 DOWNSTREAM Oseg4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16522330	3R_16522330_SNP [dm3] 3R_20696608_SNP [dm6]	G	T	2.442e^-4	1	INTRON Oamb
3R	20006816	3R_20006816_SNP [dm3] 3R_24181094_SNP [dm6]	A	C	2.446e^-4	1	UTR_3_PRIME CG13606 INTRON CG13606
3R	25831481	3R_25831481_SNP [dm3] 3R_30005759_SNP [dm6]	T	A	2.449e^-4	1	UPSTREAM CG7911 DOWNSTREAM CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11430066	2L_11430066_SNP [dm3] 2L_11430066_SNP [dm6]	T	C	2.456e^-4	1	INTERGENIC
3L	6395533	3L_6395533_SNP [dm3] 3L_6402433_SNP [dm6]	G	A	2.463e^-4	1	INTRON CG42747
3L	12893158	3L_12893158_DEL [dm3] 3L_12900058_DEL [dm6]	CAC	C	2.465e^-4	1	INTERGENIC
3R	20657425	3R_20657425_DEL [dm3] 3R_24831703_DEL [dm6]	TTTGAA	T	2.467e^-4	1	DOWNSTREAM CG43273 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20861859	3R_20861859_SNP [dm3] 3R_25036137_SNP [dm6]	G	A	2.474e^-4	1	SYNONYMOUS_CODING CG6422 UPSTREAM CG31115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7075833	2L_7075833_SNP [dm3] 2L_7075833_SNP [dm6]	T	C	2.484e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21795817	3R_21795817_SNP [dm3] 3R_25970095_SNP [dm6]	A	G	2.487e^-4	1	UTR_5_PRIME CG42261
3R	17875941	3R_17875941_DEL [dm3] 3R_22050219_DEL [dm6]	TGACTTTTTGGGTCT...	T	2.489e^-4	1	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14182344	X_14182344_SNP [dm3] X_14288311_SNP [dm6]	G	A	2.495e^-4	1	SYNONYMOUS_CODING CG9400 DOWNSTREAM Muc12Ea
2L	12927103	2L_12927103_SNP [dm3] 2L_12927103_SNP [dm6]	G	T	2.501e^-4	1	SPLICE_SITE_REGION ACXE INTRON ACXE
2L	8268706	2L_8268706_SNP [dm3] 2L_8268706_SNP [dm6]	C	T	2.502e^-4	1	INTRON Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24342448	3R_24342448_SNP [dm3] 3R_28516726_SNP [dm6]	T	A	2.510e^-4	1	INTRON Dhc98D
X	2338456	X_2338456_SNP [dm3] X_2444423_SNP [dm6]	C	A	2.512e^-4	1	UTR_3_PRIME boi UPSTREAM tko	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
2R	14765723	2R_14765723_SNP [dm3] 2R_18878218_SNP [dm6]	T	G	2.527e^-4	1	UPSTREAM sano INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9125007	3R_9125007_SNP [dm3] 3R_13299285_SNP [dm6]	C	T	2.529e^-4	1	SYNONYMOUS_CODING CG8774 DOWNSTREAM CG8773	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	1747617	3L_1747617_SNP [dm3] 3L_1747617_SNP [dm6]	C	T	2.529e^-4	1	SYNONYMOUS_CODING CG13921 UTR_5_PRIME CG13921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	24831192	3R_24831192_DEL [dm3] 3R_29005470_DEL [dm6]	GTGATGGG	G	2.538e^-4	1	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10360606	3R_10360606_SNP [dm3] 3R_14534884_SNP [dm6]	C	A	2.542e^-4	1	INTRON Pde6
3L	23194306	3L_23194306_SNP [dm3] 3L_23201206_SNP [dm6]	T	G	2.552e^-4	1	INTERGENIC	transposable element FlyBase
3R	12534191	3R_12534191_DEL [dm3] 3R_16708469_DEL [dm6]	TTG	T	2.552e^-4	1	INTRON Ubx
2L	13237509	2L_13237509_SNP [dm3] 2L_13237509_SNP [dm6]	A	T	2.555e^-4	1	INTRON CG5867
3L	8418394	3L_8418394_SNP [dm3] 3L_8425294_SNP [dm6]	C	T	2.557e^-4	1	UTR_5_PRIME Cbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2670501	3L_2670501_SNP [dm3] 3L_2670501_SNP [dm6]	T	G	2.560e^-4	1	DOWNSTREAM Fife INTRON Fife
2L	15400979	2L_15400979_SNP [dm3] 2L_15400979_SNP [dm6]	G	T	2.563e^-4	1	UPSTREAM CR45374 INTERGENIC
2R	6365484	2R_6365484_SNP [dm3] 2R_10477979_SNP [dm6]	A	C	2.565e^-4	1	UPSTREAM CR45134 INTRON whd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3310927	2L_3310927_SNP [dm3] 2L_3310927_SNP [dm6]	A	G	2.569e^-4	1	SYNONYMOUS_CODING CG15406 INTRON CG3277	TF binding site mE1_TFBS_cad
2L	7075819	2L_7075819_DEL [dm3] 2L_7075819_DEL [dm6]	TAT	T	2.572e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19926295	2R_19926295_SNP [dm3] 2R_24038772_SNP [dm6]	C	A	2.572e^-4	1	SYNONYMOUS_CODING IntS1 UPSTREAM Not11	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7104625	2R_7104625_SNP [dm3] 2R_11217120_SNP [dm6]	A	C	2.576e^-4	1	UTR_3_PRIME shn DOWNSTREAM CG9084
X	7880253	X_7880253_SNP [dm3] X_7986220_SNP [dm6]	T	C	2.578e^-4	1	UTR_3_PRIME sn DOWNSTREAM sn
2L	4015141	2L_4015141_SNP [dm3] 2L_4015141_SNP [dm6]	G	A	2.593e^-4	1	INTERGENIC
3R	17754726	3R_17754726_SNP [dm3] 3R_21929004_SNP [dm6]	A	G	2.597e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	3779254	3L_3779254_SNP [dm3] 3L_3779254_SNP [dm6]	G	A	2.599e^-4	1	INTRON CG32264
3R	12659458	3R_12659458_SNP [dm3] 3R_16833736_SNP [dm6]	T	G	2.605e^-4	1	DOWNSTREAM iab-8 INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	11484404	2L_11484404_SNP [dm3] 2L_11484404_SNP [dm6]	G	C	2.605e^-4	1	UPSTREAM CG43355 & 1 other INTERGENIC
2L	7075772	2L_7075772_SNP [dm3] 2L_7075772_SNP [dm6]	T	C	2.606e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18515495	X_18515495_SNP [dm3] X_18621462_SNP [dm6]	A	G	2.638e^-4	1	UPSTREAM CR43289 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14380877	3R_14380877_SNP [dm3] 3R_18555155_SNP [dm6]	G	T	2.641e^-4	1	INTERGENIC
2R	10897084	2R_10897084_SNP [dm3] 2R_15009579_SNP [dm6]	A	C	2.659e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5150783	X_5150783_SNP [dm3] X_5256750_SNP [dm6]	T	G	2.674e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25429917	3R_25429917_SNP [dm3] 3R_29604195_SNP [dm6]	T	G	2.679e^-4	1	INTRON alph
3L	13175193	3L_13175193_SNP [dm3] 3L_13182093_SNP [dm6]	C	G	2.689e^-4	1	INTERGENIC
3L	3003974	3L_3003974_SNP [dm3] 3L_3003974_SNP [dm6]	T	A	2.705e^-4	1	INTRON FMRFaR
3L	7544208	3L_7544208_SNP [dm3] 3L_7551108_SNP [dm6]	T	C	2.705e^-4	1	INTERGENIC
2L	9409329	2L_9409329_SNP [dm3] 2L_9409329_SNP [dm6]	T	A	2.708e^-4	1	INTRON Shawl
3L	10736565	3L_10736565_SNP [dm3] 3L_10743465_SNP [dm6]	G	A	2.713e^-4	1	INTERGENIC
3R	16522461	3R_16522461_SNP [dm3] 3R_20696739_SNP [dm6]	C	T	2.714e^-4	1	INTRON Oamb
X	2794786	X_2794786_SNP [dm3] X_2900753_SNP [dm6]	C	T	2.717e^-4	1	INTRON kirre
2L	1908355	2L_1908355_SNP [dm3] 2L_1908355_SNP [dm6]	T	C	2.718e^-4	1	INTRON CG7337
2L	12515452	2L_12515452_SNP [dm3] 2L_12515452_SNP [dm6]	A	C	2.726e^-4	1	INTRON bun
3L	18437457	3L_18437457_SNP [dm3] 3L_18444357_SNP [dm6]	T	C	2.748e^-4	1	INTERGENIC
2R	7424654	2R_7424654_SNP [dm3] 2R_11537149_SNP [dm6]	A	G	2.749e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13518074	3L_13518074_SNP [dm3] 3L_13524974_SNP [dm6]	T	C	2.752e^-4	1	UTR_3_PRIME bru-3
2R	14606718	2R_14606718_SNP [dm3] 2R_18719213_SNP [dm6]	G	A	2.753e^-4	1	UPSTREAM mir-4982 INTRON Hs3st-A
2L	5838673	2L_5838673_SNP [dm3] 2L_5838673_SNP [dm6]	A	G	2.758e^-4	1	INTRON TrissinR
2L	12927102	2L_12927102_SNP [dm3] 2L_12927102_SNP [dm6]	C	T	2.759e^-4	1	SPLICE_SITE_REGION ACXE INTRON ACXE
2L	2839111	2L_2839111_SNP [dm3] 2L_2839111_SNP [dm6]	G	C	2.765e^-4	1	SYNONYMOUS_CODING Cpr23B DOWNSTREAM CR45342	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9179991	3L_9179991_SNP [dm3] 3L_9186891_SNP [dm6]	T	C	2.765e^-4	1	INTERGENIC
2R	15041881	2R_15041881_SNP [dm3] 2R_19154376_SNP [dm6]	T	C	2.774e^-4	1	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	13631719	2L_13631719_SNP [dm3] 2L_13631719_SNP [dm6]	G	C	2.775e^-4	1	DOWNSTREAM CR43410 INTRON kuz
3R	27402906	3R_27402906_SNP [dm3] 3R_31577184_SNP [dm6]	G	T	2.796e^-4	1	INTRON pygo
3R	23367230	3R_23367230_SNP [dm3] 3R_27541508_SNP [dm6]	T	G	2.811e^-4	1	UPSTREAM Gr98b INTERGENIC
3L	1747618	3L_1747618_SNP [dm3] 3L_1747618_SNP [dm6]	C	T	2.813e^-4	1	SYNONYMOUS_CODING CG13921 START_GAINED CG13921 UTR_5_PRIME CG13921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	5815054	X_5815054_SNP [dm3] X_5921021_SNP [dm6]	T	A	2.819e^-4	1	INTRON CG3726
2L	12265113	2L_12265113_SNP [dm3] 2L_12265113_SNP [dm6]	G	A	2.823e^-4	1	INTRON aret
3L	10344662	3L_10344662_SNP [dm3] 3L_10351562_SNP [dm6]	A	T	2.826e^-4	1	INTRON CR44327
3R	25829835	3R_25829835_SNP [dm3] 3R_30004113_SNP [dm6]	C	T	2.836e^-4	1	SYNONYMOUS_CODING CG7911 UPSTREAM Nlp DOWNSTREAM Tace	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	18630975	2R_18630975_SNP [dm3] 2R_22743470_SNP [dm6]	G	T	2.839e^-4	1	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13918918	3L_13918918_SNP [dm3] 3L_13925818_SNP [dm6]	A	G	2.843e^-4	1	UPSTREAM Rgl DOWNSTREAM CG8833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3085567	2L_3085567_SNP [dm3] 2L_3085567_SNP [dm6]	G	T	2.843e^-4	1	INTRON toc
2L	10078288	2L_10078288_DEL [dm3] 2L_10078288_DEL [dm6]	CT	A	2.843e^-4	1	INTRON CG44153
2R	9893852	2R_9893852_SNP [dm3] 2R_14006347_SNP [dm6]	T	A	2.846e^-4	1	UPSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14434987	2L_14434987_SNP [dm3] 2L_14434987_SNP [dm6]	T	C	2.849e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16527239	2R_16527239_SNP [dm3] 2R_20639734_SNP [dm6]	G	T	2.854e^-4	1	NON_SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5096217	2L_5096217_SNP [dm3] 2L_5096217_SNP [dm6]	T	A	2.862e^-4	1	UPSTREAM CG4230 DOWNSTREAM CG5828 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9113481	3L_9113481_SNP [dm3] 3L_9120381_SNP [dm6]	A	T	2.863e^-4	1	INTRON bol
2R	16294534	2R_16294534_SNP [dm3] 2R_20407029_SNP [dm6]	A	C	2.868e^-4	1	INTERGENIC
3L	15511624	3L_15511624_SNP [dm3] 3L_15518524_SNP [dm6]	C	G	2.869e^-4	1	UTR_5_PRIME mex1 UPSTREAM mex1 INTRON mex1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17754749	3R_17754749_SNP [dm3] 3R_21929027_SNP [dm6]	A	C	2.878e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	10148600	3R_10148600_SNP [dm3] 3R_14322878_SNP [dm6]	G	T	2.883e^-4	1	SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12424962	3L_12424962_SNP [dm3] 3L_12431862_SNP [dm6]	C	T	2.889e^-4	1	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5874934	3L_5874934_SNP [dm3] 3L_5881834_SNP [dm6]	T	G	2.890e^-4	1	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15013532	3R_15013532_SNP [dm3] 3R_19187810_SNP [dm6]	G	C	2.893e^-4	1	INTRON CG31475
2R	11604529	2R_11604529_SNP [dm3] 2R_15717024_SNP [dm6]	T	A	2.901e^-4	1	INTERGENIC
3R	7735809	3R_7735809_SNP [dm3] 3R_11910087_SNP [dm6]	A	G	2.905e^-4	1	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7111494	2L_7111494_SNP [dm3] 2L_7111494_SNP [dm6]	G	A	2.911e^-4	1	INTRON Pvf3
3R	26339429	3R_26339429_SNP [dm3] 3R_30513707_SNP [dm6]	T	C	2.916e^-4	1	SPLICE_SITE_REGION CG31524 INTRON CG31524
X	4507960	X_4507960_SNP [dm3] X_4613927_SNP [dm6]	A	T	2.921e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13510612	3L_13510612_SNP [dm3] 3L_13517512_SNP [dm6]	C	T	2.924e^-4	1	NON_SYNONYMOUS_CODING CG10710	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3674436	3L_3674436_SNP [dm3] 3L_3674436_SNP [dm6]	C	A	2.931e^-4	1	INTERGENIC
X	9735208	X_9735208_SNP [dm3] X_9841175_SNP [dm6]	A	C	2.943e^-4	1	INTRON CG32698
X	4573268	X_4573268_SNP [dm3] X_4679235_SNP [dm6]	C	T	2.945e^-4	1	DOWNSTREAM Pp2C1 INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11799347	3L_11799347_SNP [dm3] 3L_11806247_SNP [dm6]	C	T	2.946e^-4	1	NON_SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_chinmo
2R	11646290	2R_11646290_DEL [dm3] 2R_15758785_DEL [dm6]	GGAG	G	2.948e^-4	1	INTRON CG30089	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	2771501	3R_2771501_SNP [dm3] 3R_6945779_SNP [dm6]	C	T	2.949e^-4	1	INTRON Antp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5610111	X_5610111_SNP [dm3] X_5716078_SNP [dm6]	T	C	2.954e^-4	1	UPSTREAM CG33080 INTRON CG33080
2R	16742699	2R_16742699_SNP [dm3] 2R_20855194_SNP [dm6]	T	A	2.962e^-4	1	INTERGENIC
2L	7791880	2L_7791880_SNP [dm3] 2L_7791880_SNP [dm6]	A	G	2.966e^-4	1	INTRON LKR
2R	19246038	2R_19246038_SNP [dm3] 2R_23358515_SNP [dm6]	G	T	2.973e^-4	1	UPSTREAM CG3500 & 2 others DOWNSTREAM CG9875 EXON CR44168
2R	16972488	2R_16972488_SNP [dm3] 2R_21084983_SNP [dm6]	T	A	2.976e^-4	1	INTRON Treh	TF binding site mE1_TFBS_cad
3L	6129617	3L_6129617_SNP [dm3] 3L_6136517_SNP [dm6]	C	T	2.977e^-4	1	NON_SYNONYMOUS_CODING Lcp65Af
3R	3242127	3R_3242127_SNP [dm3] 3R_7416405_SNP [dm6]	T	C	2.981e^-4	1	INTERGENIC
2R	13340808	2R_13340808_SNP [dm3] 2R_17453303_SNP [dm6]	A	T	2.992e^-4	1	UPSTREAM CG10764 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20657520	3R_20657520_SNP [dm3] 3R_24831798_SNP [dm6]	A	G	2.996e^-4	1	DOWNSTREAM CG43273 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10571389	3R_10571389_SNP [dm3] 3R_14745667_SNP [dm6]	G	T	2.998e^-4	1	DOWNSTREAM smp-30 INTRON jvl	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3L	11798992	3L_11798992_SNP [dm3] 3L_11805892_SNP [dm6]	G	A	3.001e^-4	1	SYNONYMOUS_CODING CG42255
2R	5652554	2R_5652554_SNP [dm3] 2R_9765049_SNP [dm6]	A	G	3.002e^-4	1	SYNONYMOUS_CODING trpl
2R	9592058	2R_9592058_INS [dm3] 2R_13704553_INS [dm6]	T	TGGAGC	3.010e^-4	1	INTRON fas
2R	16319139	2R_16319139_SNP [dm3] 2R_20431634_SNP [dm6]	G	T	3.015e^-4	1	INTRON CG12484
2R	13794685	2R_13794685_SNP [dm3] 2R_17907180_SNP [dm6]	G	A	3.021e^-4	1	INTRON Elk
3R	21851802	3R_21851802_SNP [dm3] 3R_26026080_SNP [dm6]	T	A	3.021e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	2167014	3R_2167014_DEL [dm3] 3R_6341292_DEL [dm6]	ATCT	C	3.033e^-4	1	UTR_3_PRIME Osi20 UPSTREAM CG17917	TF binding site mE1_TFBS_cad
3L	19055488	3L_19055488_SNP [dm3] 3L_19062388_SNP [dm6]	C	T	3.034e^-4	1	NON_SYNONYMOUS_CODING CG3797 UPSTREAM CG6812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5096101	2L_5096101_SNP [dm3] 2L_5096101_SNP [dm6]	A	T	3.046e^-4	1	UPSTREAM CG4230 DOWNSTREAM CG5828 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	25816292	3R_25816292_SNP [dm3] 3R_29990570_SNP [dm6]	C	T	3.059e^-4	1	UTR_3_PRIME CG7896 DOWNSTREAM Acph-1	TF binding site mE1_TFBS_cad
2R	11690681	2R_11690681_SNP [dm3] 2R_15803176_SNP [dm6]	G	T	3.064e^-4	1	INTRON Zasp52 & 1 other
X	8728169	X_8728169_SNP [dm3] X_8834136_SNP [dm6]	A	G	3.079e^-4	1	INTERGENIC
2R	12221840	2R_12221840_SNP [dm3] 2R_16334335_SNP [dm6]	C	G	3.081e^-4	1	UPSTREAM Vha44 INTRON Vha44
3L	12425157	3L_12425157_SNP [dm3] 3L_12432057_SNP [dm6]	T	C	3.088e^-4	1	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	9895441	2R_9895441_SNP [dm3] 2R_14007936_SNP [dm6]	A	T	3.089e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	12421890	X_12421890_SNP [dm3] X_12527857_SNP [dm6]	G	T	3.091e^-4	1	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
2L	12265175	2L_12265175_SNP [dm3] 2L_12265175_SNP [dm6]	A	T	3.097e^-4	1	INTRON aret
2L	10770000	2L_10770000_SNP [dm3] 2L_10770000_SNP [dm6]	C	T	3.098e^-4	1	UPSTREAM CG17127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	20415673	3R_20415673_SNP [dm3] 3R_24589951_SNP [dm6]	T	C	3.101e^-4	1	INTRON mld	TF binding site BDTNP1_TFBS_dl
3R	21009927	3R_21009927_SNP [dm3] 3R_25184205_SNP [dm6]	G	A	3.101e^-4	1	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17805163	X_17805163_SNP [dm3] X_17911130_SNP [dm6]	A	G	3.121e^-4	1	UPSTREAM CG6847 DOWNSTREAM Vps4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13501831	2R_13501831_DEL [dm3] 2R_17614326_DEL [dm6]	CACGC	C	3.124e^-4	1	INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	5477747	X_5477747_SNP [dm3] X_5583714_SNP [dm6]	G	A	3.127e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	7075825	2L_7075825_SNP [dm3] 2L_7075825_SNP [dm6]	C	A	3.133e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	741091	3L_741091_DEL [dm3] 3L_741091_DEL [dm6]	GCAAATCG	G	3.136e^-4	1	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	12619441	3L_12619441_SNP [dm3] 3L_12626341_SNP [dm6]	A	G	3.145e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6532800	2L_6532800_SNP [dm3] 2L_6532800_SNP [dm6]	T	C	3.152e^-4	1	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21851800	3R_21851800_INS [dm3] 3R_26026078_INS [dm6]	A	AG	3.153e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	841006	3L_841006_SNP [dm3] 3L_841006_SNP [dm6]	G	T	3.156e^-4	1	UPSTREAM Gr61a INTRON CG13902	TF binding site mE1_TFBS_sens
2L	5096216	2L_5096216_SNP [dm3] 2L_5096216_SNP [dm6]	G	T	3.160e^-4	1	UPSTREAM CG4230 DOWNSTREAM CG5828 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
X	21429800	X_21429800_SNP [dm3] X_21558773_SNP [dm6]	G	T	3.161e^-4	1	INTERGENIC
3R	15105180	3R_15105180_SNP [dm3] 3R_19279458_SNP [dm6]	A	C	3.163e^-4	1	EXON CR44173
3R	5443070	3R_5443070_SNP [dm3] 3R_9617348_SNP [dm6]	A	T	3.168e^-4	1	INTRON CG8312
2L	15344102	2L_15344102_SNP [dm3] 2L_15344102_SNP [dm6]	T	C	3.170e^-4	1	INTERGENIC
2L	4912333	2L_4912333_SNP [dm3] 2L_4912333_SNP [dm6]	G	T	3.175e^-4	1	INTRON hoe1
2L	3136648	2L_3136648_SNP [dm3] 2L_3136648_SNP [dm6]	C	G	3.176e^-4	1	INTRON toc
2R	4018673	2R_4018673_SNP [dm3] 2R_8131168_SNP [dm6]	G	A	3.176e^-4	1	UTR_5_PRIME Pbp49 & 1 other UPSTREAM Pabp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	11266735	3L_11266735_SNP [dm3] 3L_11273635_SNP [dm6]	C	T	3.208e^-4	1	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10226755	3R_10226755_SNP [dm3] 3R_14401033_SNP [dm6]	C	T	3.210e^-4	1	INTRON cv-c
2R	8590205	2R_8590205_SNP [dm3] 2R_12702700_SNP [dm6]	A	G	3.212e^-4	1	INTERGENIC
3R	26537206	3R_26537206_SNP [dm3] 3R_30711484_SNP [dm6]	T	C	3.218e^-4	1	INTERGENIC
3L	12939424	3L_12939424_SNP [dm3] 3L_12946324_SNP [dm6]	T	C	3.219e^-4	1	INTERGENIC
X	5817625	X_5817625_SNP [dm3] X_5923592_SNP [dm6]	T	C	3.223e^-4	1	INTRON CG3726
2R	13183428	2R_13183428_SNP [dm3] 2R_17295923_SNP [dm6]	A	G	3.224e^-4	1	INTRON mbl
2R	13183429	2R_13183429_SNP [dm3] 2R_17295924_SNP [dm6]	A	G	3.224e^-4	1	INTRON mbl
3R	5443071	3R_5443071_SNP [dm3] 3R_9617349_SNP [dm6]	T	A	3.224e^-4	1	INTRON CG8312
2L	13559983	2L_13559983_SNP [dm3] 2L_13559983_SNP [dm6]	C	A	3.227e^-4	1	INTRON kuz
2L	617998	2L_617998_SNP [dm3] 2L_617998_SNP [dm6]	C	T	3.228e^-4	1	INTERGENIC
2R	14855377	2R_14855377_SNP [dm3] 2R_18967872_SNP [dm6]	A	G	3.237e^-4	1	INTERGENIC
2R	7354234	2R_7354234_SNP [dm3] 2R_11466729_SNP [dm6]	C	T	3.237e^-4	1	INTERGENIC
3L	9515744	3L_9515744_SNP [dm3] 3L_9522644_SNP [dm6]	A	T	3.238e^-4	1	INTRON CG33700
2R	12644912	2R_12644912_SNP [dm3] 2R_16757407_SNP [dm6]	A	G	3.240e^-4	1	SYNONYMOUS_CODING unc-104
3R	3879066	3R_3879066_SNP [dm3] 3R_8053344_SNP [dm6]	C	T	3.246e^-4	1	INTRON CG43060
3L	3485234	3L_3485234_SNP [dm3] 3L_3485234_SNP [dm6]	A	C	3.250e^-4	1	UPSTREAM CG43074 & 1 other INTRON CG42324
3R	18611855	3R_18611855_SNP [dm3] 3R_22786133_SNP [dm6]	G	A	3.250e^-4	1	INTRON CG7029	TF binding site mE1_TFBS_HSA
2R	13320951	2R_13320951_SNP [dm3] 2R_17433446_SNP [dm6]	A	G	3.260e^-4	1	SYNONYMOUS_CODING EDTP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7346544	3R_7346544_SNP [dm3] 3R_11520822_SNP [dm6]	C	T	3.261e^-4	1	INTERGENIC
2R	14373327	2R_14373327_SNP [dm3] 2R_18485822_SNP [dm6]	G	T	3.278e^-4	1	INTRON CG30116
X	4507941	X_4507941_SNP [dm3] X_4613908_SNP [dm6]	G	C	3.278e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7758506	2L_7758506_INS [dm3] 2L_7758506_INS [dm6]	C	CCGACTATC	3.281e^-4	1	INTRON CG7196
2R	5660433	2R_5660433_SNP [dm3] 2R_9772928_SNP [dm6]	G	A	3.284e^-4	1	INTRON CG1688
3L	4881977	3L_4881977_SNP [dm3] 3L_4881977_SNP [dm6]	C	G	3.284e^-4	1	INTRON CG17150
2L	6233540	2L_6233540_SNP [dm3] 2L_6233540_SNP [dm6]	T	C	3.289e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18763272	2R_18763272_SNP [dm3] 2R_22875749_SNP [dm6]	C	G	3.293e^-4	1	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
3L	19969135	3L_19969135_SNP [dm3] 3L_19976035_SNP [dm6]	T	A	3.302e^-4	1	INTRON Ac76E
3L	6396124	3L_6396124_SNP [dm3] 3L_6403024_SNP [dm6]	A	G	3.306e^-4	1	INTRON CG42747
3R	20006836	3R_20006836_SNP [dm3] 3R_24181114_SNP [dm6]	A	C	3.312e^-4	1	UTR_3_PRIME CG13606 INTRON CG13606
2R	13183160	2R_13183160_SNP [dm3] 2R_17295655_SNP [dm6]	T	A	3.312e^-4	1	INTRON mbl
2R	17062679	2R_17062679_SNP [dm3] 2R_21175174_SNP [dm6]	C	T	3.314e^-4	1	UPSTREAM Pu DOWNSTREAM Xpd INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5590655	3L_5590655_SNP [dm3] 3L_5597555_SNP [dm6]	A	C	3.322e^-4	1	DOWNSTREAM CG5150 INTERGENIC
2R	19666796	2R_19666796_SNP [dm3] 2R_23779273_SNP [dm6]	A	C	3.347e^-4	1	INTRON CG9850
3R	18353406	3R_18353406_SNP [dm3] 3R_22527684_SNP [dm6]	T	A	3.350e^-4	1	INTRON CG5346	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	3395062	3R_3395062_SNP [dm3] 3R_7569340_SNP [dm6]	G	A	3.351e^-4	1	DOWNSTREAM CG34127 INTERGENIC
3R	6483981	3R_6483981_SNP [dm3] 3R_10658259_SNP [dm6]	C	T	3.352e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20562073	X_20562073_SNP [dm3] X_20691046_SNP [dm6]	T	A	3.362e^-4	1	UPSTREAM CR45610 INTRON run	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	13051563	2L_13051563_SNP [dm3] 2L_13051563_SNP [dm6]	T	G	3.363e^-4	1	INTRON CG9932
X	11776158	X_11776158_SNP [dm3] X_11882125_SNP [dm6]	C	A	3.371e^-4	1	INTRON CG10353
X	12421798	X_12421798_SNP [dm3] X_12527765_SNP [dm6]	C	T	3.377e^-4	1	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
3R	21009921	3R_21009921_SNP [dm3] 3R_25184199_SNP [dm6]	C	A	3.382e^-4	1	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15381439	2R_15381439_INS [dm3] 2R_19493934_INS [dm6]	A	ATTTT	3.384e^-4	1	UTR_3_PRIME Rep DOWNSTREAM hpo
2R	17062713	2R_17062713_SNP [dm3] 2R_21175208_SNP [dm6]	A	G	3.388e^-4	1	UPSTREAM Pu DOWNSTREAM Xpd INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12710988	3L_12710988_DEL [dm3] 3L_12717888_DEL [dm6]	AAA	G	3.389e^-4	1	INTERGENIC
3R	9120655	3R_9120655_SNP [dm3] 3R_13294933_SNP [dm6]	A	G	3.393e^-4	1	SYNONYMOUS_CODING CG8773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4747964	2L_4747964_SNP [dm3] 2L_4747964_SNP [dm6]	A	C	3.395e^-4	1	INTRON CG15630
3L	741887	3L_741887_SNP [dm3] 3L_741887_SNP [dm6]	G	C	3.397e^-4	1	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13183205	2R_13183205_INS [dm3] 2R_17295700_INS [dm6]	T	TTCATT	3.405e^-4	1	INTRON mbl
2R	3575451	2R_3575451_SNP [dm3] 2R_7687946_SNP [dm6]	T	C	3.417e^-4	1	INTRON CG1399
2L	3329147	2L_3329147_SNP [dm3] 2L_3329147_SNP [dm6]	C	T	3.422e^-4	1	SYNONYMOUS_CODING CG33282
3L	1375879	3L_1375879_SNP [dm3] 3L_1375879_SNP [dm6]	G	A	3.424e^-4	1	INTRON Ptp61F & 1 other
3R	17754734	3R_17754734_SNP [dm3] 3R_21929012_SNP [dm6]	C	T	3.430e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	18925041	3L_18925041_SNP [dm3] 3L_18931941_SNP [dm6]	C	A	3.434e^-4	1	INTRON CG32204	TF binding site mE1_TFBS_inv
X	5546310	X_5546310_INS [dm3] X_5652277_INS [dm6]	A	AA	3.440e^-4	1	UTR_3_PRIME CG42265	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15102065	2L_15102065_SNP [dm3] 2L_15102065_SNP [dm6]	T	A	3.440e^-4	1	INTERGENIC
3R	18384118	3R_18384118_DEL [dm3] 3R_22558396_DEL [dm6]	TT	T	3.451e^-4	1	UTR_3_PRIME CG5278
2L	7067648	2L_7067648_SNP [dm3] 2L_7067648_SNP [dm6]	T	A	3.458e^-4	1	UPSTREAM CG11289 INTERGENIC
2L	10769629	2L_10769629_SNP [dm3] 2L_10769629_SNP [dm6]	C	A	3.467e^-4	1	INTRON CG6724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	25636912	3R_25636912_SNP [dm3] 3R_29811190_SNP [dm6]	T	C	3.469e^-4	1	INTRON ca
3R	7395080	3R_7395080_SNP [dm3] 3R_11569358_SNP [dm6]	A	G	3.472e^-4	1	UTR_5_PRIME Mrp4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6396442	3L_6396442_SNP [dm3] 3L_6403342_SNP [dm6]	T	C	3.483e^-4	1	INTRON CG42747
3R	22229015	3R_22229015_SNP [dm3] 3R_26403293_SNP [dm6]	A	G	3.486e^-4	1	SYNONYMOUS_CODING ppk15
2L	9681784	2L_9681784_SNP [dm3] 2L_9681784_SNP [dm6]	A	T	3.489e^-4	1	DOWNSTREAM Pka-C1 INTERGENIC
2R	18916763	2R_18916763_SNP [dm3] 2R_23029240_SNP [dm6]	G	A	3.489e^-4	1	INTRON twi & 1 other
2R	14434238	2R_14434238_INS [dm3] 2R_18546733_INS [dm6]	A	ACTTTTAT	3.491e^-4	1	INTRON Rgk2
3R	18261475	3R_18261475_SNP [dm3] 3R_22435753_SNP [dm6]	T	A	3.492e^-4	1	START_GAINED CG13847 UTR_5_PRIME CG13847
2L	9545512	2L_9545512_SNP [dm3] 2L_9545512_SNP [dm6]	C	T	3.506e^-4	1	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
2L	536744	2L_536744_SNP [dm3] 2L_536744_SNP [dm6]	A	G	3.507e^-4	1	SYNONYMOUS_CODING ush	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12472019	3L_12472019_SNP [dm3] 3L_12478919_SNP [dm6]	A	C	3.507e^-4	1	INTRON CG10663
3L	8736851	3L_8736851_SNP [dm3] 3L_8743751_SNP [dm6]	T	A	3.512e^-4	1	INTRON Prm	TF binding site BDTNP1_TFBS_twi
2R	13640370	2R_13640370_SNP [dm3] 2R_17752865_SNP [dm6]	T	C	3.513e^-4	1	SYNONYMOUS_CODING CG5002 DOWNSTREAM CG6385	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17195456	2L_17195456_SNP [dm3] 2L_17195456_SNP [dm6]	G	A	3.531e^-4	1	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
3R	25636700	3R_25636700_SNP [dm3] 3R_29810978_SNP [dm6]	G	A	3.537e^-4	1	SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_cad
3R	15453000	3R_15453000_SNP [dm3] 3R_19627278_SNP [dm6]	G	A	3.538e^-4	1	INTRON CG6231
3L	15732964	3L_15732964_SNP [dm3] 3L_15739864_SNP [dm6]	T	A	3.538e^-4	1	INTERGENIC
2R	14373325	2R_14373325_SNP [dm3] 2R_18485820_SNP [dm6]	A	G	3.551e^-4	1	INTRON CG30116
2R	18778308	2R_18778308_SNP [dm3] 2R_22890785_SNP [dm6]	G	A	3.565e^-4	1	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
3R	9124649	3R_9124649_SNP [dm3] 3R_13298927_SNP [dm6]	C	A	3.577e^-4	1	UTR_5_PRIME CG8774 UPSTREAM CG8774 DOWNSTREAM CG8773	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	22900476	3R_22900476_SNP [dm3] 3R_27074754_SNP [dm6]	T	C	3.588e^-4	1	INTERGENIC
3L	8850557	3L_8850557_SNP [dm3] 3L_8857457_SNP [dm6]	T	C	3.593e^-4	1	INTRON dally
3R	9614355	3R_9614355_SNP [dm3] 3R_13788633_SNP [dm6]	G	A	3.600e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9964959	3L_9964959_SNP [dm3] 3L_9971859_SNP [dm6]	A	G	3.615e^-4	1	SYNONYMOUS_CODING CG6674 UPSTREAM vnc & 1 other DOWNSTREAM Nc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25899723	3R_25899723_DEL [dm3] 3R_30074001_DEL [dm6]	AGTATATTTTCACTTTTA...	A	3.622e^-4	1	INTRON sima
2L	16019786	2L_16019786_SNP [dm3] 2L_16019786_SNP [dm6]	G	C	3.623e^-4	1	INTRON beat-Ic
2L	7075699	2L_7075699_SNP [dm3] 2L_7075699_SNP [dm6]	T	C	3.625e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19239985	2R_19239985_SNP [dm3] 2R_23352462_SNP [dm6]	G	C	3.631e^-4	1	DOWNSTREAM CG34210 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15013538	3R_15013538_SNP [dm3] 3R_19187816_SNP [dm6]	G	T	3.634e^-4	1	INTRON CG31475
3R	9125126	3R_9125126_SNP [dm3] 3R_13299404_SNP [dm6]	A	C	3.648e^-4	1	SYNONYMOUS_CODING CG8774	TF binding site mE1_TFBS_HSA
3R	19318741	3R_19318741_SNP [dm3] 3R_23493019_SNP [dm6]	G	A	3.653e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12633956	3L_12633956_SNP [dm3] 3L_12640856_SNP [dm6]	A	G	3.667e^-4	1	INTRON CR32111
3R	21851767	3R_21851767_SNP [dm3] 3R_26026045_SNP [dm6]	T	C	3.685e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	6552625	3R_6552625_INS [dm3] 3R_10726903_INS [dm6]	A	AA	3.689e^-4	1	INTERGENIC
2R	9883893	2R_9883893_SNP [dm3] 2R_13996388_SNP [dm6]	A	C	3.691e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9130533	3R_9130533_SNP [dm3] 3R_13304811_SNP [dm6]	G	A	3.692e^-4	1	UTR_5_PRIME CG32473 DOWNSTREAM CG43208 INTRON CG32473	TF binding site mE1_TFBS_Trl
3L	18437366	3L_18437366_SNP [dm3] 3L_18444266_SNP [dm6]	T	G	3.693e^-4	1	INTERGENIC
3R	9566384	3R_9566384_SNP [dm3] 3R_13740662_SNP [dm6]	T	G	3.706e^-4	1	INTRON CG34383
2L	2839084	2L_2839084_SNP [dm3] 2L_2839084_SNP [dm6]	T	C	3.721e^-4	1	SYNONYMOUS_CODING Cpr23B DOWNSTREAM CR45342	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15381433	2R_15381433_DEL [dm3] 2R_19493928_DEL [dm6]	TACA	T	3.731e^-4	1	UTR_3_PRIME Rep DOWNSTREAM hpo
2R	5690915	2R_5690915_INS [dm3] 2R_9803410_INS [dm6]	G	GCG	3.734e^-4	1	INTRON CG1688
3L	11899845	3L_11899845_DEL [dm3] 3L_11906745_DEL [dm6]	TAAAGTT	T	3.739e^-4	1	INTRON CG44837
3R	18353434	3R_18353434_SNP [dm3] 3R_22527712_SNP [dm6]	G	A	3.740e^-4	1	INTRON CG5346	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	18769681	2R_18769681_SNP [dm3] 2R_22882158_SNP [dm6]	A	G	3.747e^-4	1	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17492755	2R_17492755_SNP [dm3] 2R_21605250_SNP [dm6]	G	A	3.748e^-4	1	UPSTREAM CR45150 DOWNSTREAM CG10433 INTERGENIC
2L	16233003	2L_16233003_SNP [dm3] 2L_16233003_SNP [dm6]	T	C	3.749e^-4	1	INTRON CG42817
2L	12027178	2L_12027178_SNP [dm3] 2L_12027178_SNP [dm6]	C	T	3.749e^-4	1	UPSTREAM dmGlut INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25026729	3R_25026729_SNP [dm3] 3R_29201007_SNP [dm6]	G	A	3.768e^-4	1	SYNONYMOUS_CODING CG11899 DOWNSTREAM Mesh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3862945	2L_3862945_SNP [dm3] 2L_3862945_SNP [dm6]	T	C	3.771e^-4	1	UPSTREAM CR44078 & 1 other INTRON CG3964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_h
3L	4806411	3L_4806411_SNP [dm3] 3L_4806411_SNP [dm6]	G	A	3.774e^-4	1	SYNONYMOUS_CODING CG18808 DOWNSTREAM Dhc64C	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9936020	3R_9936020_SNP [dm3] 3R_14110298_SNP [dm6]	T	C	3.781e^-4	1	DOWNSTREAM CG14357 INTRON CR44237 & 1 other
2L	8896855	2L_8896855_SNP [dm3] 2L_8896855_SNP [dm6]	C	T	3.807e^-4	1	INTERGENIC
2R	4023301	2R_4023301_MNP [dm3] 2R_8135796_MNP [dm6]	AAT	TTA	3.809e^-4	1	UPSTREAM Obp44a INTERGENIC
3L	2251301	3L_2251301_SNP [dm3] 3L_2251301_SNP [dm6]	A	C	3.826e^-4	1	NON_SYNONYMOUS_CODING CG32305	TF binding site mE1_TFBS_cad
X	13222756	X_13222756_SNP [dm3] X_13328723_SNP [dm6]	A	C	3.826e^-4	1	SYNONYMOUS_CODING IP3K2
2L	5702551	2L_5702551_SNP [dm3] 2L_5702551_SNP [dm6]	A	T	3.840e^-4	1	INTERGENIC
3L	2903324	3L_2903324_SNP [dm3] 3L_2903324_SNP [dm6]	C	T	3.857e^-4	1	INTRON Shab
3R	7382273	3R_7382273_SNP [dm3] 3R_11556551_SNP [dm6]	G	A	3.865e^-4	1	INTERGENIC
2L	5246371	2L_5246371_SNP [dm3] 2L_5246371_SNP [dm6]	C	T	3.872e^-4	1	INTRON tkv	TF binding site mE1_TFBS_cnc
2L	6167363	2L_6167363_SNP [dm3] 2L_6167363_SNP [dm6]	A	G	3.873e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13317891	2L_13317891_SNP [dm3] 2L_13317891_SNP [dm6]	G	A	3.873e^-4	1	INTRON CG43778
2L	7696708	2L_7696708_SNP [dm3] 2L_7696708_SNP [dm6]	A	C	3.876e^-4	1	NON_SYNONYMOUS_CODING Tep2 INTRON Tep2
X	19482717	X_19482717_SNP [dm3] X_19588684_SNP [dm6]	A	G	3.879e^-4	1	INTRON CG14219
X	7141783	X_7141783_SNP [dm3] X_7247750_SNP [dm6]	A	T	3.885e^-4	1	INTRON CR44357	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	17358834	2R_17358834_SNP [dm3] 2R_21471329_SNP [dm6]	C	A	3.886e^-4	1	INTRON Sdc
3L	18534250	3L_18534250_SNP [dm3] 3L_18541150_SNP [dm6]	G	T	3.890e^-4	1	INTERGENIC
3L	7544296	3L_7544296_SNP [dm3] 3L_7551196_SNP [dm6]	T	A	3.892e^-4	1	INTERGENIC
2R	9182673	2R_9182673_SNP [dm3] 2R_13295168_SNP [dm6]	G	A	3.892e^-4	1	INTRON Dh31-R
3L	694711	3L_694711_SNP [dm3] 3L_694711_SNP [dm6]	T	C	3.900e^-4	1	SYNONYMOUS_CODING CG13894	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	12421892	X_12421892_SNP [dm3] X_12527859_SNP [dm6]	A	C	3.907e^-4	1	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
3R	3864818	3R_3864818_SNP [dm3] 3R_8039096_SNP [dm6]	T	A	3.919e^-4	1	EXON CR44936	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
X	5610047	X_5610047_SNP [dm3] X_5716014_SNP [dm6]	C	T	3.921e^-4	1	UPSTREAM CG33080 INTRON CG33080
3R	2781599	3R_2781599_SNP [dm3] 3R_6955877_SNP [dm6]	T	G	3.923e^-4	1	INTRON Antp
3R	13822139	3R_13822139_SNP [dm3] 3R_17996417_SNP [dm6]	G	C	3.927e^-4	1	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4878527	X_4878527_SNP [dm3] X_4984494_SNP [dm6]	G	A	3.939e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs
3L	12424953	3L_12424953_SNP [dm3] 3L_12431853_SNP [dm6]	T	G	3.945e^-4	1	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	21851648	3R_21851648_SNP [dm3] 3R_26025926_SNP [dm6]	T	C	3.947e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	16428653	3R_16428653_SNP [dm3] 3R_20602931_SNP [dm6]	G	A	3.948e^-4	1	INTRON bon
3L	5874867	3L_5874867_SNP [dm3] 3L_5881767_SNP [dm6]	T	C	3.951e^-4	1	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	7394366	3R_7394366_SNP [dm3] 3R_11568644_SNP [dm6]	C	A	3.953e^-4	1	UPSTREAM Mrp4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7277868	2R_7277868_SNP [dm3] 2R_11390363_SNP [dm6]	A	G	3.958e^-4	1	INTRON sprt
2R	18763283	2R_18763283_SNP [dm3] 2R_22875760_SNP [dm6]	T	C	3.972e^-4	1	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
2R	16527256	2R_16527256_SNP [dm3] 2R_20639751_SNP [dm6]	C	T	3.975e^-4	1	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3519453	X_3519453_DEL [dm3] X_3625420_DEL [dm6]	AA	A	3.986e^-4	1	INTRON AstA-R1
2L	8890537	2L_8890537_SNP [dm3] 2L_8890537_SNP [dm6]	A	G	4.010e^-4	1	UPSTREAM CG42713 INTERGENIC
3R	20006700	3R_20006700_SNP [dm3] 3R_24180978_SNP [dm6]	C	T	4.034e^-4	1	UTR_3_PRIME CG13606 INTRON CG13606
2R	19115777	2R_19115777_SNP [dm3] 2R_23228254_SNP [dm6]	C	A	4.039e^-4	1	INTERGENIC
2L	2270005	2L_2270005_INS [dm3] 2L_2270005_INS [dm6]	G	GGG	4.046e^-4	1	UPSTREAM CG17242 INTERGENIC
2R	12707218	2R_12707218_SNP [dm3] 2R_16819713_SNP [dm6]	G	A	4.067e^-4	1	UPSTREAM CR43417 INTERGENIC
2L	14001513	2L_14001513_SNP [dm3] 2L_14001513_SNP [dm6]	G	A	4.068e^-4	1	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	7065958	2L_7065958_SNP [dm3] 2L_7065958_SNP [dm6]	G	A	4.072e^-4	1	UPSTREAM Nuf2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	16698041	X_16698041_DEL [dm3] X_16804008_DEL [dm6]	TA	T	4.075e^-4	1	UPSTREAM CG9125 INTRON CG13005	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	21672802	3R_21672802_SNP [dm3] 3R_25847080_SNP [dm6]	A	T	4.076e^-4	1	DOWNSTREAM CR45656 & 2 others INTERGENIC
2R	15396268	2R_15396268_SNP [dm3] 2R_19508763_SNP [dm6]	A	G	4.083e^-4	1	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18055024	X_18055024_SNP [dm3] X_18160991_SNP [dm6]	T	A	4.090e^-4	1	INTRON Frq1
2L	13427416	2L_13427416_SNP [dm3] 2L_13427416_SNP [dm6]	C	T	4.098e^-4	1	INTRON CG42784
X	5817626	X_5817626_SNP [dm3] X_5923593_SNP [dm6]	C	T	4.101e^-4	1	INTRON CG3726
3L	13187631	3L_13187631_SNP [dm3] 3L_13194531_SNP [dm6]	G	T	4.110e^-4	1	INTERGENIC
3L	16821030	3L_16821030_SNP [dm3] 3L_16827930_SNP [dm6]	A	G	4.118e^-4	1	INTRON CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3536168	2L_3536168_SNP [dm3] 2L_3536168_SNP [dm6]	T	G	4.124e^-4	1	INTERGENIC
2R	6129778	2R_6129778_SNP [dm3] 2R_10242273_SNP [dm6]	A	G	4.124e^-4	1	INTRON Hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20883837	3R_20883837_SNP [dm3] 3R_25058115_SNP [dm6]	A	C	4.127e^-4	1	UPSTREAM Unc-13-4B INTRON Unc-13-4B
2R	10897126	2R_10897126_SNP [dm3] 2R_15009621_SNP [dm6]	A	G	4.128e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7257030	2R_7257030_SNP [dm3] 2R_11369525_SNP [dm6]	G	A	4.157e^-4	1	SYNONYMOUS_CODING CG13204 DOWNSTREAM Tapdelta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	16374228	2L_16374228_SNP [dm3] 2L_16374228_SNP [dm6]	T	G	4.166e^-4	1	INTERGENIC
3L	14274256	3L_14274256_SNP [dm3] 3L_14281156_SNP [dm6]	T	G	4.167e^-4	1	INTRON fz
3R	10232856	3R_10232856_SNP [dm3] 3R_14407134_SNP [dm6]	T	A	4.178e^-4	1	INTRON cv-c
3L	6396128	3L_6396128_SNP [dm3] 3L_6403028_SNP [dm6]	G	A	4.187e^-4	1	INTRON CG42747
2R	19345973	2R_19345973_SNP [dm3] 2R_23458450_SNP [dm6]	G	A	4.189e^-4	1	SYNONYMOUS_CODING skpF INTRON CG43795	TF binding site mE1_TFBS_chinmo
2L	16540828	2L_16540828_SNP [dm3] 2L_16540828_SNP [dm6]	T	C	4.190e^-4	1	INTERGENIC
3L	4050483	3L_4050483_SNP [dm3] 3L_4050483_SNP [dm6]	A	T	4.194e^-4	1	INTRON CG1136	TF binding site mE1_TFBS_inv
3R	13085679	3R_13085679_SNP [dm3] 3R_17259957_SNP [dm6]	C	T	4.200e^-4	1	INTRON beat-IIb
3R	6551989	3R_6551989_SNP [dm3] 3R_10726267_SNP [dm6]	T	C	4.206e^-4	1	INTERGENIC
2R	10698383	2R_10698383_SNP [dm3] 2R_14810878_SNP [dm6]	C	T	4.220e^-4	1	DOWNSTREAM hui INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5787789	X_5787789_SNP [dm3] X_5893756_SNP [dm6]	C	T	4.222e^-4	1	INTRON CR45668	TF binding site mE1_TFBS_zfh1
2L	9238528	2L_9238528_SNP [dm3] 2L_9238528_SNP [dm6]	T	A	4.222e^-4	1	INTRON tai	TF binding site mE1_TFBS_Trl
3L	9628578	3L_9628578_SNP [dm3] 3L_9635478_SNP [dm6]	G	A	4.224e^-4	1	INTRON fry
3R	25818024	3R_25818024_SNP [dm3] 3R_29992302_SNP [dm6]	A	G	4.226e^-4	1	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1723350	3L_1723350_SNP [dm3] 3L_1723350_SNP [dm6]	T	C	4.246e^-4	1	UPSTREAM CG18171 INTRON drpr
3R	18188469	3R_18188469_SNP [dm3] 3R_22362747_SNP [dm6]	A	G	4.248e^-4	1	UTR_5_PRIME Muted & 1 other UPSTREAM CG7071 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15224192	2L_15224192_SNP [dm3] 2L_15224192_SNP [dm6]	A	C	4.268e^-4	1	INTERGENIC
X	13182386	X_13182386_SNP [dm3] X_13288353_SNP [dm6]	C	T	4.269e^-4	1	UTR_5_PRIME CG15744 DOWNSTREAM CG15743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	7397776	3R_7397776_SNP [dm3] 3R_11572054_SNP [dm6]	G	A	4.270e^-4	1	INTRON Mrp4	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	743355	3L_743355_SNP [dm3] 3L_743355_SNP [dm6]	A	G	4.271e^-4	1	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	14362040	X_14362040_SNP [dm3] X_14468007_SNP [dm6]	C	T	4.283e^-4	1	INTERGENIC
2L	13049399	2L_13049399_SNP [dm3] 2L_13049399_SNP [dm6]	A	C	4.284e^-4	1	INTRON CG9932
3R	23270898	3R_23270898_SNP [dm3] 3R_27445176_SNP [dm6]	A	G	4.290e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11569204	3L_11569204_SNP [dm3] 3L_11576104_SNP [dm6]	C	T	4.294e^-4	1	DOWNSTREAM CG33271 INTRON CG33489
2L	13235245	2L_13235245_SNP [dm3] 2L_13235245_SNP [dm6]	A	G	4.306e^-4	1	UPSTREAM CG15479 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2R	6668146	2R_6668146_SNP [dm3] 2R_10780641_SNP [dm6]	C	G	4.306e^-4	1	INTRON CG33144
X	4807788	X_4807788_SNP [dm3] X_4913755_SNP [dm6]	G	C	4.319e^-4	1	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9123924	3R_9123924_SNP [dm3] 3R_13298202_SNP [dm6]	T	A	4.328e^-4	1	UTR_3_PRIME CG8773 UPSTREAM CG8774
2R	19965436	2R_19965436_SNP [dm3] 2R_24077913_SNP [dm6]	G	A	4.333e^-4	1	UTR_3_PRIME Mlp60A DOWNSTREAM CG10339	TF binding site mE1_TFBS_cad
3L	18831598	3L_18831598_SNP [dm3] 3L_18838498_SNP [dm6]	A	T	4.341e^-4	1	INTRON Indy	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12424973	3L_12424973_SNP [dm3] 3L_12431873_SNP [dm6]	G	T	4.346e^-4	1	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	9210427	X_9210427_SNP [dm3] X_9316394_SNP [dm6]	T	C	4.358e^-4	1	INTERGENIC
2L	12573758	2L_12573758_SNP [dm3] 2L_12573758_SNP [dm6]	A	G	4.367e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2900461	3L_2900461_SNP [dm3] 3L_2900461_SNP [dm6]	A	G	4.381e^-4	1	INTRON Shab
3L	1148227	3L_1148227_SNP [dm3] 3L_1148227_SNP [dm6]	C	T	4.383e^-4	1	INTRON bab2
3R	18146475	3R_18146475_SNP [dm3] 3R_22320753_SNP [dm6]	A	T	4.391e^-4	1	INTRON CG34377
X	7537029	X_7537029_SNP [dm3] X_7642996_SNP [dm6]	T	C	4.394e^-4	1	INTRON ct
X	15096239	X_15096239_SNP [dm3] X_15202206_SNP [dm6]	C	T	4.395e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10360632	3R_10360632_SNP [dm3] 3R_14534910_SNP [dm6]	G	T	4.397e^-4	1	INTRON Pde6
2L	12026974	2L_12026974_SNP [dm3] 2L_12026974_SNP [dm6]	T	A	4.398e^-4	1	UPSTREAM dmGlut INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19454407	2R_19454407_SNP [dm3] 2R_23566884_SNP [dm6]	T	A	4.399e^-4	1	INTRON apt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8812542	3L_8812542_SNP [dm3] 3L_8819442_SNP [dm6]	C	T	4.406e^-4	1	INTERGENIC
X	7141776	X_7141776_SNP [dm3] X_7247743_SNP [dm6]	A	G	4.409e^-4	1	INTRON CR44357	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	10770101	2L_10770101_SNP [dm3] 2L_10770101_SNP [dm6]	T	A	4.409e^-4	1	UPSTREAM CG17127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7265117	2R_7265117_SNP [dm3] 2R_11377612_SNP [dm6]	G	A	4.410e^-4	1	SYNONYMOUS_CODING Tsp47F DOWNSTREAM CG13203
2R	13183194	2R_13183194_SNP [dm3] 2R_17295689_SNP [dm6]	C	A	4.410e^-4	1	INTRON mbl
2L	1096063	2L_1096063_INS [dm3] 2L_1096063_INS [dm6]	A	ACA	4.415e^-4	1	INTRON CG4629	TF binding site mE1_TFBS_cad
3L	9946295	3L_9946295_SNP [dm3] 3L_9953195_SNP [dm6]	A	T	4.424e^-4	1	INTRON CG34356
3R	18212176	3R_18212176_SNP [dm3] 3R_22386454_SNP [dm6]	G	A	4.434e^-4	1	UTR_3_PRIME CG43343 DOWNSTREAM CG5379
2R	12560716	2R_12560716_SNP [dm3] 2R_16673211_SNP [dm6]	A	C	4.441e^-4	1	DOWNSTREAM CG30463 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	1964419	2L_1964419_INS [dm3] 2L_1964419_INS [dm6]	C	CAAC	4.445e^-4	1	INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	25243054	3R_25243054_SNP [dm3] 3R_29417332_SNP [dm6]	A	C	4.448e^-4	1	INTRON Ptp99A
3L	12970941	3L_12970941_SNP [dm3] 3L_12977841_SNP [dm6]	T	C	4.465e^-4	1	INTERGENIC
2R	7962246	2R_7962246_SNP [dm3] 2R_12074741_SNP [dm6]	G	C	4.474e^-4	1	INTRON CG8888
3R	15627022	3R_15627022_SNP [dm3] 3R_19801300_SNP [dm6]	C	G	4.474e^-4	1	INTRON bnl	TF binding site mE1_TFBS_inv
2L	15401192	2L_15401192_SNP [dm3] 2L_15401192_SNP [dm6]	A	G	4.479e^-4	1	UPSTREAM CR45374 INTERGENIC
3L	1264568	3L_1264568_SNP [dm3] 3L_1264568_SNP [dm6]	A	G	4.483e^-4	1	INTRON CG9134
3L	6396476	3L_6396476_SNP [dm3] 3L_6403376_SNP [dm6]	T	C	4.484e^-4	1	INTRON CG42747
3R	21851934	3R_21851934_SNP [dm3] 3R_26026212_SNP [dm6]	C	T	4.485e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	2320995	2L_2320995_SNP [dm3] 2L_2320995_SNP [dm6]	A	G	4.490e^-4	1	INTRON CG9967 & 1 other
2L	10770302	2L_10770302_SNP [dm3] 2L_10770302_SNP [dm6]	C	T	4.503e^-4	1	UPSTREAM CG17127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17364053	2R_17364053_SNP [dm3] 2R_21476548_SNP [dm6]	T	A	4.510e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18130236	3L_18130236_SNP [dm3] 3L_18137136_SNP [dm6]	T	C	4.511e^-4	1	UPSTREAM CR44669 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15086225	2L_15086225_SNP [dm3] 2L_15086225_SNP [dm6]	T	C	4.520e^-4	1	INTRON CG15270
2L	18692747	2L_18692747_SNP [dm3] 2L_18692747_SNP [dm6]	C	T	4.526e^-4	1	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25653905	3R_25653905_SNP [dm3] 3R_29828183_SNP [dm6]	G	A	4.527e^-4	1	INTRON Atg16
2R	19666938	2R_19666938_SNP [dm3] 2R_23779415_SNP [dm6]	G	T	4.534e^-4	1	INTRON CG9850
3R	15013533	3R_15013533_SNP [dm3] 3R_19187811_SNP [dm6]	C	T	4.536e^-4	1	INTRON CG31475
3L	9396652	3L_9396652_SNP [dm3] 3L_9403552_SNP [dm6]	A	T	4.538e^-4	1	INTERGENIC
3L	13187881	3L_13187881_SNP [dm3] 3L_13194781_SNP [dm6]	T	C	4.544e^-4	1	INTERGENIC
3R	12938547	3R_12938547_SNP [dm3] 3R_17112825_SNP [dm6]	T	C	4.557e^-4	1	INTRON cher	TF binding site mE1_TFBS_cnc
2R	17856941	2R_17856941_SNP [dm3] 2R_21969436_SNP [dm6]	A	T	4.559e^-4	1	INTRON ppk9
2R	18763061	2R_18763061_SNP [dm3] 2R_22875538_SNP [dm6]	A	C	4.559e^-4	1	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
2L	6234355	2L_6234355_SNP [dm3] 2L_6234355_SNP [dm6]	T	A	4.579e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	18647197	X_18647197_SNP [dm3] X_18753164_SNP [dm6]	G	T	4.584e^-4	1	INTERGENIC
2R	12562620	2R_12562620_SNP [dm3] 2R_16675115_SNP [dm6]	A	C	4.585e^-4	1	INTRON CG30463
3R	13361367	3R_13361367_SNP [dm3] 3R_17535645_SNP [dm6]	G	T	4.616e^-4	1	UPSTREAM P5cr-2 INTRON P5cr-2
3L	10940673	3L_10940673_SNP [dm3] 3L_10947573_SNP [dm6]	T	A	4.620e^-4	1	INTERGENIC
X	13069277	X_13069277_SNP [dm3] X_13175244_SNP [dm6]	A	T	4.623e^-4	1	INTRON CG34411	TF binding site BDTNP1_TFBS_twi
3R	21341152	3R_21341152_SNP [dm3] 3R_25515430_SNP [dm6]	A	T	4.625e^-4	1	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13788985	2R_13788985_SNP [dm3] 2R_17901480_SNP [dm6]	G	A	4.630e^-4	1	INTRON Elk
2L	1023525	2L_1023525_SNP [dm3] 2L_1023525_SNP [dm6]	G	A	4.630e^-4	1	INTRON IA-2	TF binding site mE1_TFBS_chinmo
X	7373644	X_7373644_DEL [dm3] X_7479611_DEL [dm6]	TGGCT	C	4.640e^-4	1	INTERGENIC
2R	13792152	2R_13792152_SNP [dm3] 2R_17904647_SNP [dm6]	C	A	4.641e^-4	1	INTRON Elk
3L	13042287	3L_13042287_SNP [dm3] 3L_13049187_SNP [dm6]	A	T	4.641e^-4	1	DOWNSTREAM CG11279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18634096	2R_18634096_SNP [dm3] 2R_22746591_SNP [dm6]	G	T	4.643e^-4	1	INTRON CG42260
3L	10557701	3L_10557701_SNP [dm3] 3L_10564601_SNP [dm6]	T	G	4.644e^-4	1	INTRON A2bp1
2L	15509352	2L_15509352_SNP [dm3] 2L_15509352_SNP [dm6]	T	G	4.648e^-4	1	INTERGENIC
2R	7106386	2R_7106386_SNP [dm3] 2R_11218881_SNP [dm6]	G	A	4.650e^-4	1	UTR_5_PRIME CG9084 UPSTREAM Syx6 INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	19522389	X_19522389_SNP [dm3] X_19628356_SNP [dm6]	G	A	4.653e^-4	1	NON_SYNONYMOUS_CODING e_y_3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8033585	2L_8033585_SNP [dm3] 2L_8033585_SNP [dm6]	C	G	4.655e^-4	1	INTRON CG7367 & 1 other
3R	7380267	3R_7380267_SNP [dm3] 3R_11554545_SNP [dm6]	G	A	4.664e^-4	1	SYNONYMOUS_CODING CG14708
2R	6394982	2R_6394982_SNP [dm3] 2R_10507477_SNP [dm6]	C	A	4.669e^-4	1	UTR_3_PRIME lola INTRON lola
2L	7494560	2L_7494560_SNP [dm3] 2L_7494560_SNP [dm6]	C	A	4.675e^-4	1	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	4694511	2R_4694511_SNP [dm3] 2R_8807006_SNP [dm6]	C	T	4.675e^-4	1	INTRON sns
2L	5336462	2L_5336462_SNP [dm3] 2L_5336462_SNP [dm6]	A	T	4.677e^-4	1	UPSTREAM fusl INTRON fusl
2L	1996142	2L_1996142_SNP [dm3] 2L_1996142_SNP [dm6]	C	T	4.681e^-4	1	DOWNSTREAM CG33543 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	7086883	3R_7086883_SNP [dm3] 3R_11261161_SNP [dm6]	G	A	4.687e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18774581	2R_18774581_SNP [dm3] 2R_22887058_SNP [dm6]	T	G	4.698e^-4	1	SYNONYMOUS_CODING asrij UPSTREAM CG3499 DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	7728404	3L_7728404_SNP [dm3] 3L_7735304_SNP [dm6]	C	T	4.699e^-4	1	INTRON CG32373 & 1 other
3R	23021178	3R_23021178_SNP [dm3] 3R_27195456_SNP [dm6]	A	T	4.700e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	9566998	2R_9566998_SNP [dm3] 2R_13679493_SNP [dm6]	C	T	4.702e^-4	1	INTRON fas
3R	5013614	3R_5013614_SNP [dm3] 3R_9187892_SNP [dm6]	A	T	4.713e^-4	1	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16396423	2L_16396423_SNP [dm3] 2L_16396423_SNP [dm6]	C	A	4.719e^-4	1	INTERGENIC
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	4.725e^-4	1	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
2R	16871874	2R_16871874_SNP [dm3] 2R_20984369_SNP [dm6]	C	T	4.726e^-4	1	SYNONYMOUS_STOP CG15651 DOWNSTREAM CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15797850	2R_15797850_SNP [dm3] 2R_19910345_SNP [dm6]	A	C	4.729e^-4	1	EXON CR44573	TF binding site mE1_TFBS_chinmo
3R	23953119	3R_23953119_SNP [dm3] 3R_28127397_SNP [dm6]	C	T	4.734e^-4	1	INTERGENIC
2R	18059545	2R_18059545_SNP [dm3] 2R_22172040_SNP [dm6]	A	C	4.735e^-4	1	DOWNSTREAM CG3045 INTRON a	TF binding site mE1_TFBS_cad
3R	20932518	3R_20932518_SNP [dm3] 3R_25106796_SNP [dm6]	C	T	4.750e^-4	1	SYNONYMOUS_CODING CG34027
3L	2353624	3L_2353624_SNP [dm3] 3L_2353624_SNP [dm6]	C	T	4.759e^-4	1	INTERGENIC
3L	3917688	3L_3917688_SNP [dm3] 3L_3917688_SNP [dm6]	A	T	4.762e^-4	1	INTRON Eip63F-1
2R	13022082	2R_13022082_SNP [dm3] 2R_17134577_SNP [dm6]	C	T	4.764e^-4	1	NON_SYNONYMOUS_CODING CG11400 DOWNSTREAM Acp54A1
2L	7063537	2L_7063537_SNP [dm3] 2L_7063537_SNP [dm6]	A	T	4.767e^-4	1	UTR_3_PRIME Mnn1 UPSTREAM Sem1 DOWNSTREAM Mnn1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc
2L	8718414	2L_8718414_SNP [dm3] 2L_8718414_SNP [dm6]	G	A	4.771e^-4	1	INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4806126	3L_4806126_SNP [dm3] 3L_4806126_SNP [dm6]	A	T	4.778e^-4	1	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7707933	2R_7707933_SNP [dm3] 2R_11820428_SNP [dm6]	T	G	4.781e^-4	1	INTERGENIC
X	5380161	X_5380161_SNP [dm3] X_5486128_SNP [dm6]	G	T	4.791e^-4	1	INTRON SPR	TF binding site BDTNP1_TFBS_da
3L	13918638	3L_13918638_SNP [dm3] 3L_13925538_SNP [dm6]	T	G	4.795e^-4	1	UPSTREAM Rgl DOWNSTREAM CG8833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3369712	2L_3369712_DEL [dm3] 2L_3369712_DEL [dm6]	TT	T	4.806e^-4	1	UPSTREAM CG34394 INTRON CG34394
2L	3311222	2L_3311222_SNP [dm3] 2L_3311222_SNP [dm6]	C	T	4.810e^-4	1	SYNONYMOUS_CODING CG15406 INTRON CG3277	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15572455	X_15572455_SNP [dm3] X_15678422_SNP [dm6]	T	A	4.828e^-4	1	DOWNSTREAM CG12708 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4747975	2L_4747975_SNP [dm3] 2L_4747975_SNP [dm6]	G	A	4.841e^-4	1	INTRON CG15630
3R	17687571	3R_17687571_SNP [dm3] 3R_21861849_SNP [dm6]	T	C	4.850e^-4	1	UPSTREAM CR45644 EXON CR45645	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	6501225	3R_6501225_DEL [dm3] 3R_10675503_DEL [dm6]	TCT	T	4.856e^-4	1	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	9192404	2R_9192404_SNP [dm3] 2R_13304899_SNP [dm6]	C	T	4.857e^-4	1	INTERGENIC
2R	18635845	2R_18635845_DEL [dm3] 2R_22748340_DEL [dm6]	ATATTGATGACAA...	A	4.870e^-4	1	INTRON CG42260
3R	14342272	3R_14342272_SNP [dm3] 3R_18516550_SNP [dm6]	A	T	4.877e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
3L	5629439	3L_5629439_SNP [dm3] 3L_5636339_SNP [dm6]	G	T	4.884e^-4	1	UTR_5_PRIME Blimp-1 INTRON Blimp-1
2R	15329432	2R_15329432_SNP [dm3] 2R_19441927_SNP [dm6]	G	A	4.890e^-4	1	UPSTREAM RpL11 DOWNSTREAM Spt5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	17200604	3R_17200604_SNP [dm3] 3R_21374882_SNP [dm6]	A	C	4.892e^-4	1	INTRON mod_mdg4_	TF binding site mE1_TFBS_sens
3R	18930767	3R_18930767_SNP [dm3] 3R_23105045_SNP [dm6]	C	A	4.892e^-4	1	INTRON CG13830
2R	19686568	2R_19686568_SNP [dm3] 2R_23799045_SNP [dm6]	A	T	4.897e^-4	1	UPSTREAM CG9850 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10623619	3L_10623619_SNP [dm3] 3L_10630519_SNP [dm6]	T	A	4.901e^-4	1	UPSTREAM CG42536 & 2 others INTRON CG42535	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_run
2L	6269783	2L_6269783_SNP [dm3] 2L_6269783_SNP [dm6]	A	G	4.921e^-4	1	INTRON Ddr
2R	18917185	2R_18917185_DEL [dm3] 2R_23029662_DEL [dm6]	TTTTTTCATTTATATTAAAG...	T	4.921e^-4	1	INTRON twi & 1 other
2R	18917210	2R_18917210_DEL [dm3] 2R_23029687_DEL [dm6]	ATCA	A	4.921e^-4	1	INTRON twi & 1 other
2L	8891974	2L_8891974_SNP [dm3] 2L_8891974_SNP [dm6]	T	A	4.924e^-4	1	UTR_3_PRIME CG42713 DOWNSTREAM CG42713
3L	16624819	3L_16624819_SNP [dm3] 3L_16631719_SNP [dm6]	T	C	4.933e^-4	1	INTRON Abl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9113482	3L_9113482_SNP [dm3] 3L_9120382_SNP [dm6]	A	T	4.934e^-4	1	INTRON bol
3R	26153742	3R_26153742_SNP [dm3] 3R_30328020_SNP [dm6]	T	C	4.943e^-4	1	INTRON hdc
3L	9014596	3L_9014596_SNP [dm3] 3L_9021496_SNP [dm6]	C	T	4.955e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7065040	2L_7065040_SNP [dm3] 2L_7065040_SNP [dm6]	C	T	4.960e^-4	1	SYNONYMOUS_CODING Nuf2 DOWNSTREAM Sem1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	22161708	X_22161708_SNP [dm3] X_22759872_SNP [dm6]	T	G	4.961e^-4	1	INTRON CR44997
2R	14182260	2R_14182260_SNP [dm3] 2R_18294755_SNP [dm6]	T	A	4.968e^-4	1	UPSTREAM CG18536 DOWNSTREAM CG14502 INTRON sbb	TF binding site mE1_TFBS_HSA
2R	10337941	2R_10337941_SNP [dm3] 2R_14450436_SNP [dm6]	G	C	4.972e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_cad
3R	6091038	3R_6091038_SNP [dm3] 3R_10265316_SNP [dm6]	A	T	4.980e^-4	1	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9629338	3L_9629338_SNP [dm3] 3L_9636238_SNP [dm6]	G	T	4.996e^-4	1	INTRON fry	TF binding site mE1_TFBS_cad
2R	18444520	2R_18444520_SNP [dm3] 2R_22557015_SNP [dm6]	T	C	5.012e^-4	1	INTRON px	TF binding site mE1_TFBS_cad
2L	1023529	2L_1023529_SNP [dm3] 2L_1023529_SNP [dm6]	C	T	5.026e^-4	1	INTRON IA-2	TF binding site mE1_TFBS_chinmo
2R	13411469	2R_13411469_DEL [dm3] 2R_17523964_DEL [dm6]	TGGACAAAACA...	AT	5.037e^-4	1	INTRON Patronin	TF binding site mE1_TFBS_cad
2R	13411485	2R_13411485_SNP [dm3] 2R_17523980_SNP [dm6]	A	C	5.037e^-4	1	INTRON Patronin	TF binding site mE1_TFBS_cad
2R	9182647	2R_9182647_SNP [dm3] 2R_13295142_SNP [dm6]	C	T	5.047e^-4	1	INTRON Dh31-R
3L	11525951	3L_11525951_SNP [dm3] 3L_11532851_SNP [dm6]	A	G	5.048e^-4	1	INTRON Mob2
3R	21618229	3R_21618229_SNP [dm3] 3R_25792507_SNP [dm6]	A	C	5.048e^-4	1	UPSTREAM CR43631 DOWNSTREAM CR43632 INTERGENIC
3L	9937063	3L_9937063_SNP [dm3] 3L_9943963_SNP [dm6]	T	A	5.048e^-4	1	INTRON CG34356
3R	17821134	3R_17821134_SNP [dm3] 3R_21995412_SNP [dm6]	T	C	5.049e^-4	1	INTRON Eip93F
2R	9724670	2R_9724670_SNP [dm3] 2R_13837165_SNP [dm6]	A	C	5.059e^-4	1	INTRON CG6347
2R	19350385	2R_19350385_SNP [dm3] 2R_23462862_SNP [dm6]	G	T	5.059e^-4	1	INTRON CG43795	TF binding site mE1_TFBS_inv
2L	507134	2L_507134_DEL [dm3] 2L_507134_DEL [dm6]	AGGTGGAGGTA...	A	5.069e^-4	1	INTRON ush
3R	20524191	3R_20524191_SNP [dm3] 3R_24698469_SNP [dm6]	T	G	5.069e^-4	1	INTRON slo
3R	15354070	3R_15354070_SNP [dm3] 3R_19528348_SNP [dm6]	G	T	5.073e^-4	1	INTRON Dys
3L	7543597	3L_7543597_SNP [dm3] 3L_7550497_SNP [dm6]	C	T	5.073e^-4	1	INTERGENIC
3R	17821061	3R_17821061_SNP [dm3] 3R_21995339_SNP [dm6]	G	A	5.086e^-4	1	INTRON Eip93F
2L	15749361	2L_15749361_SNP [dm3] 2L_15749361_SNP [dm6]	T	C	5.088e^-4	1	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
3L	9392167	3L_9392167_SNP [dm3] 3L_9399067_SNP [dm6]	G	A	5.097e^-4	1	UTR_5_PRIME CG4080 DOWNSTREAM eIF-4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	3896009	3R_3896009_SNP [dm3] 3R_8070287_SNP [dm6]	A	G	5.098e^-4	1	INTRON mAChR-B
2L	2045922	2L_2045922_SNP [dm3] 2L_2045922_SNP [dm6]	C	A	5.098e^-4	1	SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	16556245	2L_16556245_SNP [dm3] 2L_16556245_SNP [dm6]	G	T	5.104e^-4	1	INTRON CG42389
2L	11458720	2L_11458720_SNP [dm3] 2L_11458720_SNP [dm6]	G	C	5.106e^-4	1	INTERGENIC
2L	4963170	2L_4963170_SNP [dm3] 2L_4963170_SNP [dm6]	T	C	5.108e^-4	1	SYNONYMOUS_CODING CG34124 DOWNSTREAM CR43824	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5336432	2L_5336432_SNP [dm3] 2L_5336432_SNP [dm6]	G	A	5.120e^-4	1	UPSTREAM fusl INTRON fusl
2L	15401074	2L_15401074_SNP [dm3] 2L_15401074_SNP [dm6]	T	A	5.121e^-4	1	UPSTREAM CR45374 INTERGENIC
3R	10914564	3R_10914564_SNP [dm3] 3R_15088842_SNP [dm6]	A	T	5.125e^-4	1	INTRON CG6966
3L	18093340	3L_18093340_SNP [dm3] 3L_18100240_SNP [dm6]	C	A	5.129e^-4	1	INTRON CG13698
2R	14566845	2R_14566845_SNP [dm3] 2R_18679340_SNP [dm6]	C	G	5.132e^-4	1	SYNONYMOUS_CODING CG44435 UTR_3_PRIME CG44434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	7066118	2L_7066118_SNP [dm3] 2L_7066118_SNP [dm6]	A	T	5.142e^-4	1	UPSTREAM Nuf2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15013518	3R_15013518_DEL [dm3] 3R_19187796_DEL [dm6]	TCAGAACAAAT...	T	5.144e^-4	1	INTRON CG31475
X	16719667	X_16719667_SNP [dm3] X_16825634_SNP [dm6]	C	T	5.155e^-4	1	INTRON CG4829
3R	20657304	3R_20657304_SNP [dm3] 3R_24831582_SNP [dm6]	A	G	5.165e^-4	1	DOWNSTREAM CG43273 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14605321	2R_14605321_SNP [dm3] 2R_18717816_SNP [dm6]	C	T	5.167e^-4	1	UPSTREAM Hs3st-A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26216867	3R_26216867_SNP [dm3] 3R_30391145_SNP [dm6]	T	C	5.178e^-4	1	DOWNSTREAM Fer2LCH INTERGENIC
3R	8865863	3R_8865863_SNP [dm3] 3R_13040141_SNP [dm6]	A	C	5.180e^-4	1	UTR_3_PRIME CG11668 DOWNSTREAM snk
2R	14373328	2R_14373328_SNP [dm3] 2R_18485823_SNP [dm6]	C	T	5.182e^-4	1	INTRON CG30116
3R	8076534	3R_8076534_SNP [dm3] 3R_12250812_SNP [dm6]	T	C	5.197e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15401490	2L_15401490_SNP [dm3] 2L_15401490_SNP [dm6]	C	G	5.199e^-4	1	UPSTREAM CR45374 INTERGENIC
2R	19927589	2R_19927589_SNP [dm3] 2R_24040066_SNP [dm6]	T	C	5.205e^-4	1	SYNONYMOUS_CODING IntS1
2L	15641089	2L_15641089_SNP [dm3] 2L_15641089_SNP [dm6]	A	C	5.208e^-4	1	INTERGENIC
2R	3723235	2R_3723235_SNP [dm3] 2R_7835730_SNP [dm6]	C	T	5.215e^-4	1	UTR_3_PRIME Dgk DOWNSTREAM Atg10 & 1 other
2L	4493495	2L_4493495_SNP [dm3] 2L_4493495_SNP [dm6]	G	A	5.215e^-4	1	NON_SYNONYMOUS_CODING dp INTRON dp
X	21429964	X_21429964_SNP [dm3] X_21558937_SNP [dm6]	C	T	5.222e^-4	1	INTERGENIC
2L	15402084	2L_15402084_SNP [dm3] 2L_15402084_SNP [dm6]	T	C	5.223e^-4	1	INTERGENIC
2L	15105244	2L_15105244_SNP [dm3] 2L_15105244_SNP [dm6]	G	A	5.225e^-4	1	INTERGENIC
2L	15395305	2L_15395305_SNP [dm3] 2L_15395305_SNP [dm6]	A	T	5.240e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	8129331	X_8129331_SNP [dm3] X_8235298_SNP [dm6]	A	G	5.246e^-4	1	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	16145479	2R_16145479_SNP [dm3] 2R_20257974_SNP [dm6]	A	T	5.253e^-4	1	UPSTREAM Hsl & 1 other INTRON Hsl	TF binding site mE1_TFBS_cad
X	13606763	X_13606763_SNP [dm3] X_13712730_SNP [dm6]	A	G	5.255e^-4	1	SYNONYMOUS_CODING NnaD INTRON CG9940
2R	14605110	2R_14605110_SNP [dm3] 2R_18717605_SNP [dm6]	T	C	5.260e^-4	1	UPSTREAM Hs3st-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	9936011	3R_9936011_SNP [dm3] 3R_14110289_SNP [dm6]	C	G	5.260e^-4	1	DOWNSTREAM CG14357 INTRON CR44237 & 1 other
3L	16146332	3L_16146332_SNP [dm3] 3L_16153232_SNP [dm6]	C	T	5.268e^-4	1	INTRON CG5151
2R	10492425	2R_10492425_SNP [dm3] 2R_14604920_SNP [dm6]	G	A	5.277e^-4	1	SYNONYMOUS_CODING CG12868 UPSTREAM tra2 DOWNSTREAM CG33469	TF binding site mE1_TFBS_HSA
X	13182300	X_13182300_SNP [dm3] X_13288267_SNP [dm6]	C	T	5.277e^-4	1	UTR_5_PRIME CG15744 DOWNSTREAM CG15743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	7968297	2L_7968297_SNP [dm3] 2L_7968297_SNP [dm6]	T	G	5.284e^-4	1	INTRON Snoo
3L	18506722	3L_18506722_SNP [dm3] 3L_18513622_SNP [dm6]	T	G	5.287e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	7047917	2L_7047917_SNP [dm3] 2L_7047917_SNP [dm6]	A	G	5.291e^-4	1	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	9599423	3R_9599423_SNP [dm3] 3R_13773701_SNP [dm6]	T	C	5.292e^-4	1	INTRON CG9297
3L	12424979	3L_12424979_SNP [dm3] 3L_12431879_SNP [dm6]	A	C	5.292e^-4	1	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	2731891	3R_2731891_DEL [dm3] 3R_6906169_DEL [dm6]	GG	G	5.298e^-4	1	DOWNSTREAM Antp INTRON Antp
2L	12573808	2L_12573808_SNP [dm3] 2L_12573808_SNP [dm6]	A	G	5.299e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17732814	3R_17732814_SNP [dm3] 3R_21907092_SNP [dm6]	A	T	5.305e^-4	1	UTR_3_PRIME CG6678
3R	5291857	3R_5291857_SNP [dm3] 3R_9466135_SNP [dm6]	C	G	5.307e^-4	1	UTR_3_PRIME CG16779
2R	20419380	2R_20419380_DEL [dm3] 2R_24531857_DEL [dm6]	GTTTTGGTTCAATCGG...	G	5.308e^-4	1	UPSTREAM CG13585 & 1 other INTRON CG13585	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4923267	3L_4923267_SNP [dm3] 3L_4923267_SNP [dm6]	C	T	5.309e^-4	1	INTERGENIC
3L	6833923	3L_6833923_SNP [dm3] 3L_6840823_SNP [dm6]	T	C	5.318e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	8082579	3R_8082579_SNP [dm3] 3R_12256857_SNP [dm6]	C	T	5.322e^-4	1	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	19202765	3R_19202765_SNP [dm3] 3R_23377043_SNP [dm6]	G	T	5.327e^-4	1	UTR_3_PRIME CG4393 DOWNSTREAM CG4393	TF binding site mE1_TFBS_inv
3L	10736561	3L_10736561_SNP [dm3] 3L_10743461_SNP [dm6]	A	G	5.327e^-4	1	INTERGENIC
2R	18916775	2R_18916775_SNP [dm3] 2R_23029252_SNP [dm6]	T	G	5.330e^-4	1	INTRON twi & 1 other
X	7729188	X_7729188_SNP [dm3] X_7835155_SNP [dm6]	T	C	5.356e^-4	1	INTRON CG1402
3L	8820239	3L_8820239_SNP [dm3] 3L_8827139_SNP [dm6]	A	G	5.359e^-4	1	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9123877	2R_9123877_SNP [dm3] 2R_13236372_SNP [dm6]	T	C	5.365e^-4	1	SYNONYMOUS_CODING CG4676 DOWNSTREAM CG4679	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15193900	2L_15193900_SNP [dm3] 2L_15193900_SNP [dm6]	C	A	5.365e^-4	1	INTRON CG4168
X	14040530	X_14040530_DEL [dm3] X_14146497_DEL [dm6]	GGACCATCG	G	5.368e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7434777	3R_7434777_SNP [dm3] 3R_11609055_SNP [dm6]	C	T	5.372e^-4	1	INTRON Jupiter
2L	1966909	2L_1966909_SNP [dm3] 2L_1966909_SNP [dm6]	T	C	5.384e^-4	1	INTRON erm	TF binding site BDTNP1_TFBS_da
3R	3898485	3R_3898485_SNP [dm3] 3R_8072763_SNP [dm6]	A	T	5.393e^-4	1	INTRON mAChR-B	TF binding site BDTNP1_TFBS_dl
3R	21839199	3R_21839199_SNP [dm3] 3R_26013477_SNP [dm6]	T	G	5.394e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	7803612	2L_7803612_SNP [dm3] 2L_7803612_SNP [dm6]	G	C	5.403e^-4	1	UTR_3_PRIME cdc14 DOWNSTREAM cdc14 INTRON cdc14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10620620	2R_10620620_SNP [dm3] 2R_14733115_SNP [dm6]	A	T	5.412e^-4	1	INTERGENIC
2R	9263128	2R_9263128_INS [dm3] 2R_13375623_INS [dm6]	T	TCA	5.415e^-4	1	DOWNSTREAM CG10814 INTERGENIC
3L	14146968	3L_14146968_SNP [dm3] 3L_14153868_SNP [dm6]	G	T	5.418e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	7438767	2R_7438767_SNP [dm3] 2R_11551262_SNP [dm6]	G	A	5.430e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16540799	2L_16540799_SNP [dm3] 2L_16540799_SNP [dm6]	A	G	5.433e^-4	1	INTERGENIC
3R	24349235	3R_24349235_SNP [dm3] 3R_28523513_SNP [dm6]	T	G	5.436e^-4	1	INTRON Ppn	TF binding site mE1_TFBS_chinmo
X	21434151	X_21434151_SNP [dm3] X_21563124_SNP [dm6]	G	A	5.459e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11038163	3L_11038163_SNP [dm3] 3L_11045063_SNP [dm6]	T	C	5.463e^-4	1	INTRON CG43693	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	21618270	3R_21618270_SNP [dm3] 3R_25792548_SNP [dm6]	T	C	5.467e^-4	1	UPSTREAM CR43631 DOWNSTREAM CR43632 INTERGENIC
2R	19123878	2R_19123878_SNP [dm3] 2R_23236355_SNP [dm6]	T	C	5.473e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14208723	3L_14208723_SNP [dm3] 3L_14215623_SNP [dm6]	A	C	5.477e^-4	1	INTRON nuf
2R	17364145	2R_17364145_SNP [dm3] 2R_21476640_SNP [dm6]	A	G	5.488e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	10080671	X_10080671_SNP [dm3] X_10186638_SNP [dm6]	C	T	5.505e^-4	1	NON_SYNONYMOUS_CODING CG43902 INTRON CR44894
3L	9390877	3L_9390877_SNP [dm3] 3L_9397777_SNP [dm6]	A	T	5.506e^-4	1	INTRON CG4080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12989188	3R_12989188_SNP [dm3] 3R_17163466_SNP [dm6]	A	G	5.506e^-4	1	INTRON Mur89F
3L	6268750	3L_6268750_SNP [dm3] 3L_6275650_SNP [dm6]	C	T	5.508e^-4	1	UPSTREAM CG43168 INTERGENIC
2R	15329397	2R_15329397_SNP [dm3] 2R_19441892_SNP [dm6]	G	A	5.520e^-4	1	UTR_3_PRIME Spt5 UPSTREAM RpL11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	11596424	3L_11596424_SNP [dm3] 3L_11603324_SNP [dm6]	G	T	5.530e^-4	1	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12421908	X_12421908_SNP [dm3] X_12527875_SNP [dm6]	A	G	5.540e^-4	1	INTRON CG43921
2L	2839204	2L_2839204_SNP [dm3] 2L_2839204_SNP [dm6]	T	A	5.541e^-4	1	SYNONYMOUS_CODING Cpr23B UPSTREAM CG2975 DOWNSTREAM CR45342	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14333003	3R_14333003_SNP [dm3] 3R_18507281_SNP [dm6]	G	T	5.544e^-4	1	UPSTREAM fru INTRON fru	TF binding site mE1_TFBS_HSA
2L	6739379	2L_6739379_SNP [dm3] 2L_6739379_SNP [dm6]	G	A	5.547e^-4	1	SYNONYMOUS_CODING TTLL3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13605264	3L_13605264_SNP [dm3] 3L_13612164_SNP [dm6]	G	A	5.558e^-4	1	INTRON bru-3
2L	5614514	2L_5614514_SNP [dm3] 2L_5614514_SNP [dm6]	T	G	5.564e^-4	1	UPSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	16425016	2L_16425016_SNP [dm3] 2L_16425016_SNP [dm6]	G	A	5.565e^-4	1	INTRON CG5888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	8134430	3R_8134430_SNP [dm3] 3R_12308708_SNP [dm6]	C	A	5.568e^-4	1	INTERGENIC
3R	14388009	3R_14388009_SNP [dm3] 3R_18562287_SNP [dm6]	T	C	5.569e^-4	1	DOWNSTREAM CG7691 INTERGENIC
3L	18082236	3L_18082236_SNP [dm3] 3L_18089136_SNP [dm6]	T	G	5.569e^-4	1	UTR_3_PRIME CG13698
3R	23957821	3R_23957821_SNP [dm3] 3R_28132099_SNP [dm6]	A	T	5.573e^-4	1	INTERGENIC
X	4341707	X_4341707_SNP [dm3] X_4447674_SNP [dm6]	T	C	5.576e^-4	1	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	12501293	2R_12501293_SNP [dm3] 2R_16613788_SNP [dm6]	C	A	5.580e^-4	1	INTRON CG5065
2R	12094184	2R_12094184_SNP [dm3] 2R_16206679_SNP [dm6]	C	T	5.593e^-4	1	UPSTREAM mrj DOWNSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11484390	2L_11484390_SNP [dm3] 2L_11484390_SNP [dm6]	T	A	5.594e^-4	1	UPSTREAM CG43355 & 1 other INTERGENIC
3L	8079688	3L_8079688_SNP [dm3] 3L_8086588_SNP [dm6]	G	A	5.595e^-4	1	INTRON Ect4	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	8890223	2L_8890223_SNP [dm3] 2L_8890223_SNP [dm6]	G	A	5.601e^-4	1	INTERGENIC
3L	2400853	3L_2400853_SNP [dm3] 3L_2400853_SNP [dm6]	G	T	5.603e^-4	1	INTRON CG45186

By genomic position
Variant impact
Gene name

Cuticul_n_C29 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results