DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.432e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.0030429
In_3R_K	0.0008409

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	13.4808	0.0012
In_2R_NS	5.5721	0.0617
In_3R_K	17.0761	0.0002

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2020 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	6368920	2R_6368920_SNP [dm3] 2R_10481415_SNP [dm6]	G	A	8.656e^-7	0.777	SYNONYMOUS_CODING CG17765 DOWNSTREAM lola & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	14279485	2L_14279485_DEL [dm3] 2L_14279485_DEL [dm6]	CT	C	1.033e^-6	0.777	INTRON wb
3L	13093102	3L_13093102_SNP [dm3] 3L_13100002_SNP [dm6]	A	T	1.306e^-6	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	21293251	3L_21293251_SNP [dm3] 3L_21300151_SNP [dm6]	T	A	1.658e^-6	0.777	UPSTREAM Cpr78Cc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9849005	2R_9849005_DEL [dm3] 2R_13961500_DEL [dm6]	ATATTTACAAA...	A	2.404e^-6	0.797	INTRON Cp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	5666304	2R_5666304_SNP [dm3] 2R_9778799_SNP [dm6]	G	A	2.549e^-6	0.797	INTRON CG1688
3L	13188602	3L_13188602_SNP [dm3] 3L_13195502_SNP [dm6]	A	G	4.248e^-6	0.857	INTERGENIC
3R	26460046	3R_26460046_DEL [dm3] 3R_30634324_DEL [dm6]	TT	T	4.562e^-6	0.857	INTERGENIC
2L	14279574	2L_14279574_SNP [dm3] 2L_14279574_SNP [dm6]	G	T	5.071e^-6	0.857	INTRON wb
3L	13188077	3L_13188077_SNP [dm3] 3L_13194977_SNP [dm6]	A	G	8.275e^-6	0.857	INTERGENIC
3L	13188083	3L_13188083_SNP [dm3] 3L_13194983_SNP [dm6]	C	T	8.275e^-6	0.857	INTERGENIC
3L	13188084	3L_13188084_SNP [dm3] 3L_13194984_SNP [dm6]	C	T	8.275e^-6	0.857	INTERGENIC
3R	3801353	3R_3801353_SNP [dm3] 3R_7975631_SNP [dm6]	T	C	8.418e^-6	0.857	SYNONYMOUS_CODING CD98hc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9191571	3L_9191571_SNP [dm3] 3L_9198471_SNP [dm6]	G	A	8.567e^-6	0.857	INTERGENIC
2L	10092491	2L_10092491_SNP [dm3] 2L_10092491_SNP [dm6]	A	T	8.646e^-6	0.857	UPSTREAM CG13133 INTRON CG44153
3L	13188081	3L_13188081_SNP [dm3] 3L_13194981_SNP [dm6]	C	A	9.300e^-6	0.857	INTERGENIC
2R	9892999	2R_9892999_SNP [dm3] 2R_14005494_SNP [dm6]	A	G	9.807e^-6	0.857	DOWNSTREAM mir-4978 INTRON mam
X	20878431	X_20878431_SNP [dm3] X_21007404_SNP [dm6]	T	C	1.034e^-5	0.857	INTERGENIC
3R	14342184	3R_14342184_SNP [dm3] 3R_18516462_SNP [dm6]	C	T	1.035e^-5	0.857	INTRON fru	TF binding site BDTNP1_TFBS_twi
3L	13188049	3L_13188049_SNP [dm3] 3L_13194949_SNP [dm6]	C	A	1.039e^-5	0.857	INTERGENIC
3L	21273144	3L_21273144_SNP [dm3] 3L_21280044_SNP [dm6]	C	G	1.063e^-5	0.857	UTR_5_PRIME AcCoAS UPSTREAM AcCoAS DOWNSTREAM ppl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11129449	3L_11129449_DEL [dm3] 3L_11136349_DEL [dm6]	CTGGGTG	C	1.100e^-5	0.857	DOWNSTREAM CG14143 INTRON CG32082
2R	14885709	2R_14885709_SNP [dm3] 2R_18998204_SNP [dm6]	C	T	1.107e^-5	0.857	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8092781	2R_8092781_SNP [dm3] 2R_12205276_SNP [dm6]	C	T	1.312e^-5	0.857	UPSTREAM CR45276 INTERGENIC
2R	6365027	2R_6365027_SNP [dm3] 2R_10477522_SNP [dm6]	G	A	1.399e^-5	0.857	UPSTREAM CR45134 INTRON whd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	4176716	3R_4176716_SNP [dm3] 3R_8350994_SNP [dm6]	C	A	1.454e^-5	0.857	SYNONYMOUS_CODING Atg13	TF binding site mE1_TFBS_sens
3L	13188580	3L_13188580_SNP [dm3] 3L_13195480_SNP [dm6]	A	C	1.517e^-5	0.857	INTERGENIC
2R	8352893	2R_8352893_SNP [dm3] 2R_12465388_SNP [dm6]	T	A	1.529e^-5	0.857	UTR_3_PRIME Lac DOWNSTREAM dgt5
2R	9892970	2R_9892970_SNP [dm3] 2R_14005465_SNP [dm6]	A	G	1.548e^-5	0.857	DOWNSTREAM mir-4978 INTRON mam
2R	19926295	2R_19926295_SNP [dm3] 2R_24038772_SNP [dm6]	C	A	1.575e^-5	0.857	SYNONYMOUS_CODING IntS1 UPSTREAM Not11	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16507558	2R_16507558_SNP [dm3] 2R_20620053_SNP [dm6]	T	A	1.627e^-5	0.857	DOWNSTREAM CG11180 INTRON CG9945	TF binding site mE1_TFBS_sens
2R	19927589	2R_19927589_SNP [dm3] 2R_24040066_SNP [dm6]	T	C	1.706e^-5	0.857	SYNONYMOUS_CODING IntS1
2R	5334094	2R_5334094_SNP [dm3] 2R_9446589_SNP [dm6]	G	T	1.756e^-5	0.857	UPSTREAM CR45321 INTRON Camta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5497023	2R_5497023_SNP [dm3] 2R_9609518_SNP [dm6]	C	A	1.788e^-5	0.857	UPSTREAM CR44069 INTRON CG12926
3R	14342260	3R_14342260_SNP [dm3] 3R_18516538_SNP [dm6]	A	G	1.815e^-5	0.857	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	10352042	2L_10352042_SNP [dm3] 2L_10352042_SNP [dm6]	T	G	1.816e^-5	0.857	NON_SYNONYMOUS_CODING CG34367 INTRON CG34367
3R	4198842	3R_4198842_SNP [dm3] 3R_8373120_SNP [dm6]	T	C	1.824e^-5	0.857	INTRON CG45263	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12738528	3R_12738528_SNP [dm3] 3R_16912806_SNP [dm6]	T	G	1.851e^-5	0.857	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
3L	16932401	3L_16932401_SNP [dm3] 3L_16939301_SNP [dm6]	A	G	1.982e^-5	0.857	SYNONYMOUS_CODING Cpr73D UPSTREAM CG13022	TF binding site mE1_TFBS_chinmo
2R	5334093	2R_5334093_SNP [dm3] 2R_9446588_SNP [dm6]	T	C	2.042e^-5	0.857	UPSTREAM CR45321 INTRON Camta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6659878	3R_6659878_SNP [dm3] 3R_10834156_SNP [dm6]	G	C	2.048e^-5	0.857	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6659901	3R_6659901_SNP [dm3] 3R_10834179_SNP [dm6]	A	C	2.073e^-5	0.857	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13188174	3L_13188174_SNP [dm3] 3L_13195074_SNP [dm6]	C	G	2.153e^-5	0.857	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22348685	3L_22348685_SNP [dm3] 3L_22355585_SNP [dm6]	T	C	2.175e^-5	0.857	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	6659902	3R_6659902_DEL [dm3] 3R_10834180_DEL [dm6]	GCTCCAG	G	2.188e^-5	0.857	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16932162	3L_16932162_SNP [dm3] 3L_16939062_SNP [dm6]	A	T	2.215e^-5	0.857	UPSTREAM CG13022 DOWNSTREAM Cpr73D INTERGENIC
3R	14342166	3R_14342166_SNP [dm3] 3R_18516444_SNP [dm6]	T	C	2.240e^-5	0.857	INTRON fru	TF binding site BDTNP1_TFBS_twi
3R	26456178	3R_26456178_SNP [dm3] 3R_30630456_SNP [dm6]	T	C	2.320e^-5	0.857	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14342198	3R_14342198_SNP [dm3] 3R_18516476_SNP [dm6]	A	T	2.330e^-5	0.857	INTRON fru	TF binding site BDTNP1_TFBS_twi
2R	19350385	2R_19350385_SNP [dm3] 2R_23462862_SNP [dm6]	G	T	2.332e^-5	0.857	INTRON CG43795	TF binding site mE1_TFBS_inv
X	13306446	X_13306446_SNP [dm3] X_13412413_SNP [dm6]	C	T	2.387e^-5	0.857	NON_SYNONYMOUS_CODING CG1998 UPSTREAM CG1998 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18205502	3L_18205502_SNP [dm3] 3L_18212402_SNP [dm6]	A	T	2.423e^-5	0.857	INTERGENIC
3R	3242127	3R_3242127_SNP [dm3] 3R_7416405_SNP [dm6]	T	C	2.451e^-5	0.857	INTERGENIC
3L	13188108	3L_13188108_SNP [dm3] 3L_13195008_SNP [dm6]	G	C	2.570e^-5	0.857	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14342272	3R_14342272_SNP [dm3] 3R_18516550_SNP [dm6]	A	T	2.575e^-5	0.857	INTRON fru	TF binding site BDTNP1_TFBS_twi
X	12542111	X_12542111_SNP [dm3] X_12648078_SNP [dm6]	C	G	2.612e^-5	0.857	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	22373749	3L_22373749_SNP [dm3] 3L_22380649_SNP [dm6]	G	C	2.625e^-5	0.857	INTRON Ten-m	TF binding site mE1_TFBS_sens
2R	19669974	2R_19669974_SNP [dm3] 2R_23782451_SNP [dm6]	C	T	2.779e^-5	0.857	INTRON CG9850	TF binding site mE1_TFBS_chinmo
3R	17933656	3R_17933656_SNP [dm3] 3R_22107934_SNP [dm6]	C	T	2.873e^-5	0.857	INTRON CG5778
2R	16368090	2R_16368090_SNP [dm3] 2R_20480585_SNP [dm6]	G	A	2.966e^-5	0.857	INTERGENIC
3R	14342251	3R_14342251_SNP [dm3] 3R_18516529_SNP [dm6]	C	T	3.049e^-5	0.857	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	11430020	2L_11430020_SNP [dm3] 2L_11430020_SNP [dm6]	C	G	3.137e^-5	0.857	INTERGENIC
3L	13188344	3L_13188344_SNP [dm3] 3L_13195244_SNP [dm6]	G	A	3.200e^-5	0.857	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6407818	2R_6407818_SNP [dm3] 2R_10520313_SNP [dm6]	A	C	3.204e^-5	0.857	UTR_3_PRIME lola INTRON lola	TF binding site BDTNP1_TFBS_sna
X	7812923	X_7812923_SNP [dm3] X_7918890_SNP [dm6]	T	C	3.212e^-5	0.857	NON_SYNONYMOUS_CODING hdm DOWNSTREAM snz	TF binding site mE1_TFBS_chinmo
3R	15318453	3R_15318453_SNP [dm3] 3R_19492731_SNP [dm6]	C	T	3.235e^-5	0.857	INTRON Dys
X	3422598	X_3422598_SNP [dm3] X_3528565_SNP [dm6]	T	A	3.238e^-5	0.857	INTRON CG32791
3L	11039110	3L_11039110_SNP [dm3] 3L_11046010_SNP [dm6]	A	G	3.250e^-5	0.857	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	15721120	2R_15721120_SNP [dm3] 2R_19833615_SNP [dm6]	G	A	3.263e^-5	0.857	DOWNSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9836989	2R_9836989_SNP [dm3] 2R_13949484_SNP [dm6]	C	T	3.263e^-5	0.857	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14015212	2R_14015212_SNP [dm3] 2R_18127707_SNP [dm6]	C	A	3.338e^-5	0.857	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11430079	2L_11430079_SNP [dm3] 2L_11430079_SNP [dm6]	T	A	3.383e^-5	0.857	INTERGENIC
3L	5342569	3L_5342569_DEL [dm3] 3L_5349469_DEL [dm6]	AAATA	A	3.389e^-5	0.857	INTRON lama
2R	6091583	2R_6091583_SNP [dm3] 2R_10204078_SNP [dm6]	T	A	3.418e^-5	0.857	UTR_3_PRIME Hr46
2L	9671096	2L_9671096_SNP [dm3] 2L_9671096_SNP [dm6]	G	C	3.426e^-5	0.857	UPSTREAM CR44150 INTERGENIC
3L	18082236	3L_18082236_SNP [dm3] 3L_18089136_SNP [dm6]	T	G	3.515e^-5	0.867	UTR_3_PRIME CG13698
2L	11430066	2L_11430066_SNP [dm3] 2L_11430066_SNP [dm6]	T	C	3.566e^-5	0.869	INTERGENIC
X	14721399	X_14721399_DEL [dm3] X_14827366_DEL [dm6]	GG	G	3.752e^-5	0.902	UTR_3_PRIME CG14408 DOWNSTREAM CG14408
X	18693129	X_18693129_SNP [dm3] X_18799096_SNP [dm6]	T	C	3.819e^-5	0.907	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13188525	3L_13188525_SNP [dm3] 3L_13195425_SNP [dm6]	G	A	4.056e^-5	0.919	INTERGENIC
2R	14886112	2R_14886112_SNP [dm3] 2R_18998607_SNP [dm6]	G	T	4.079e^-5	0.919	NON_SYNONYMOUS_CODING tn INTRON tn
3L	16932210	3L_16932210_SNP [dm3] 3L_16939110_SNP [dm6]	G	A	4.079e^-5	0.919	UTR_3_PRIME Cpr73D UPSTREAM CG13022	TF binding site mE1_TFBS_chinmo
3R	22938134	3R_22938134_SNP [dm3] 3R_27112412_SNP [dm6]	A	T	4.097e^-5	0.919	UPSTREAM CG5815 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	19359143	3L_19359143_SNP [dm3] 3L_19366043_SNP [dm6]	C	T	4.115e^-5	0.919	INTRON CG32206	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12985214	3L_12985214_SNP [dm3] 3L_12992114_SNP [dm6]	T	A	4.228e^-5	0.923	INTERGENIC
3R	5281732	3R_5281732_SNP [dm3] 3R_9456010_SNP [dm6]	T	C	4.290e^-5	0.923	NON_SYNONYMOUS_CODING GstZ1 DOWNSTREAM ps & 1 other	TF binding site BDTNP1_TFBS_dl
3L	6069432	3L_6069432_SNP [dm3] 3L_6076332_SNP [dm6]	A	T	4.414e^-5	0.923	UPSTREAM CG6619 DOWNSTREAM CG6610 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6365974	2R_6365974_SNP [dm3] 2R_10478469_SNP [dm6]	G	A	4.418e^-5	0.923	UTR_5_PRIME whd DOWNSTREAM trsn EXON CR45134	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	13188650	3L_13188650_SNP [dm3] 3L_13195550_SNP [dm6]	T	A	4.429e^-5	0.923	INTERGENIC
2R	8092581	2R_8092581_SNP [dm3] 2R_12205076_SNP [dm6]	C	T	4.447e^-5	0.923	INTERGENIC
2R	9884202	2R_9884202_SNP [dm3] 2R_13996697_SNP [dm6]	T	G	4.499e^-5	0.923	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10153572	2R_10153572_SNP [dm3] 2R_14266067_SNP [dm6]	T	G	4.526e^-5	0.923	INTRON CG8547
3R	21626374	3R_21626374_SNP [dm3] 3R_25800652_SNP [dm6]	T	A	4.580e^-5	0.924	INTERGENIC
X	10809696	X_10809696_SNP [dm3] X_10915663_SNP [dm6]	C	G	4.714e^-5	0.928	SYNONYMOUS_CODING CG43901 INTRON CG43901	TF binding site mE1_TFBS_chinmo
3L	22356294	3L_22356294_SNP [dm3] 3L_22363194_SNP [dm6]	T	A	4.908e^-5	0.928	INTRON Ten-m
X	4573268	X_4573268_SNP [dm3] X_4679235_SNP [dm6]	C	T	5.053e^-5	0.928	DOWNSTREAM Pp2C1 INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26456412	3R_26456412_SNP [dm3] 3R_30630690_SNP [dm6]	C	A	5.174e^-5	0.928	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7755347	3R_7755347_SNP [dm3] 3R_11929625_SNP [dm6]	A	G	5.229e^-5	0.928	INTRON Cad87A
3L	6069411	3L_6069411_SNP [dm3] 3L_6076311_SNP [dm6]	T	A	5.277e^-5	0.928	UPSTREAM CG6619 DOWNSTREAM CG6610 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6069414	3L_6069414_SNP [dm3] 3L_6076314_SNP [dm6]	A	T	5.277e^-5	0.928	UPSTREAM CG6619 DOWNSTREAM CG6610 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6743071	2R_6743071_INS [dm3] 2R_10855566_INS [dm6]	T	TTTCCTGCATGAATAACTAG...	5.297e^-5	0.928	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2R	19533110	2R_19533110_SNP [dm3] 2R_23645587_SNP [dm6]	G	A	5.374e^-5	0.928	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	9395811	3L_9395811_SNP [dm3] 3L_9402711_SNP [dm6]	G	T	5.431e^-5	0.928	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22900602	3R_22900602_SNP [dm3] 3R_27074880_SNP [dm6]	A	C	5.457e^-5	0.928	UPSTREAM CG14257 INTERGENIC
2L	2045889	2L_2045889_SNP [dm3] 2L_2045889_SNP [dm6]	A	G	5.597e^-5	0.928	SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	9064360	3L_9064360_SNP [dm3] 3L_9071260_SNP [dm6]	A	G	5.668e^-5	0.928	SYNONYMOUS_CODING CG4911	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4631981	2R_4631981_SNP [dm3] 2R_8744476_SNP [dm6]	A	T	5.684e^-5	0.928	UPSTREAM CR44277 INTRON CG8740
3L	6069406	3L_6069406_SNP [dm3] 3L_6076306_SNP [dm6]	A	T	5.757e^-5	0.928	UPSTREAM CG6619 DOWNSTREAM CG6610 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9486872	2R_9486872_SNP [dm3] 2R_13599367_SNP [dm6]	G	A	5.860e^-5	0.928	DOWNSTREAM S-Lap5 INTERGENIC
2R	8088146	2R_8088146_SNP [dm3] 2R_12200641_SNP [dm6]	T	G	5.870e^-5	0.928	UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	9873048	2R_9873048_SNP [dm3] 2R_13985543_SNP [dm6]	T	C	5.956e^-5	0.928	UTR_3_PRIME RN-tre DOWNSTREAM CG8067 & 1 other
2R	6365761	2R_6365761_DEL [dm3] 2R_10478256_DEL [dm6]	GC	G	5.975e^-5	0.928	DOWNSTREAM trsn INTRON whd EXON CR45134	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	2299119	3L_2299119_SNP [dm3] 3L_2299119_SNP [dm6]	A	G	6.088e^-5	0.928	SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6069392	3L_6069392_SNP [dm3] 3L_6076292_SNP [dm6]	C	G	6.179e^-5	0.928	UPSTREAM CG6619 DOWNSTREAM CG6610 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8088154	2R_8088154_SNP [dm3] 2R_12200649_SNP [dm6]	T	C	6.216e^-5	0.928	UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	10533922	2R_10533922_SNP [dm3] 2R_14646417_SNP [dm6]	T	C	6.232e^-5	0.928	DOWNSTREAM CG10139 INTERGENIC
3R	3185767	3R_3185767_SNP [dm3] 3R_7360045_SNP [dm6]	A	G	6.273e^-5	0.928	INTERGENIC
3R	17340454	3R_17340454_SNP [dm3] 3R_21514732_SNP [dm6]	A	G	6.308e^-5	0.928	INTERGENIC
X	12855543	X_12855543_SNP [dm3] X_12961510_SNP [dm6]	T	G	6.398e^-5	0.928	DOWNSTREAM CG32642 INTERGENIC
2R	8196208	2R_8196208_SNP [dm3] 2R_12308703_SNP [dm6]	C	T	6.460e^-5	0.928	INTRON CG17739	TF binding site mE1_TFBS_chinmo
3R	26456781	3R_26456781_SNP [dm3] 3R_30631059_SNP [dm6]	T	C	6.663e^-5	0.928	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14342262	3R_14342262_SNP [dm3] 3R_18516540_SNP [dm6]	A	C	6.705e^-5	0.928	INTRON fru	TF binding site BDTNP1_TFBS_twi
X	3519453	X_3519453_DEL [dm3] X_3625420_DEL [dm6]	AA	A	6.747e^-5	0.928	INTRON AstA-R1
X	19370386	X_19370386_SNP [dm3] X_19476353_SNP [dm6]	A	G	6.780e^-5	0.928	DOWNSTREAM CG12200 INTRON CG32533	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22349799	3L_22349799_SNP [dm3] 3L_22356699_SNP [dm6]	A	C	6.790e^-5	0.928	INTRON Ten-m
3R	3214266	3R_3214266_SNP [dm3] 3R_7388544_SNP [dm6]	C	T	6.943e^-5	0.928	DOWNSTREAM CR45560 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	14721395	X_14721395_SNP [dm3] X_14827362_SNP [dm6]	C	T	6.974e^-5	0.928	UTR_3_PRIME CG14408 DOWNSTREAM CG14408
2L	16087163	2L_16087163_SNP [dm3] 2L_16087163_SNP [dm6]	G	A	7.042e^-5	0.928	INTERGENIC
3R	15619754	3R_15619754_SNP [dm3] 3R_19794032_SNP [dm6]	C	T	7.051e^-5	0.928	DOWNSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9888506	2R_9888506_SNP [dm3] 2R_14001001_SNP [dm6]	T	G	7.241e^-5	0.928	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	13051563	2L_13051563_SNP [dm3] 2L_13051563_SNP [dm6]	T	G	7.268e^-5	0.928	INTRON CG9932
2R	15551416	2R_15551416_SNP [dm3] 2R_19663911_SNP [dm6]	G	T	7.298e^-5	0.928	DOWNSTREAM hrg & 1 other INTERGENIC
3R	27135170	3R_27135170_SNP [dm3] 3R_31309448_SNP [dm6]	A	G	7.378e^-5	0.928	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	16558392	3L_16558392_SNP [dm3] 3L_16565292_SNP [dm6]	A	T	7.409e^-5	0.928	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	7984765	X_7984765_INS [dm3] X_8090732_INS [dm6]	C	CTAATACGTC	7.447e^-5	0.928	INTRON Ubc-E2H	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11271845	3L_11271845_SNP [dm3] 3L_11278745_SNP [dm6]	G	A	7.507e^-5	0.928	INTERGENIC
3L	9395701	3L_9395701_SNP [dm3] 3L_9402601_SNP [dm6]	G	A	7.567e^-5	0.928	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	18693136	X_18693136_SNP [dm3] X_18799103_SNP [dm6]	C	T	7.573e^-5	0.928	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7812964	X_7812964_SNP [dm3] X_7918931_SNP [dm6]	T	G	7.611e^-5	0.928	DOWNSTREAM snz INTRON hdm	TF binding site mE1_TFBS_chinmo
3R	14297246	3R_14297246_SNP [dm3] 3R_18471524_SNP [dm6]	G	A	7.666e^-5	0.928	INTRON fru
2L	10097682	2L_10097682_SNP [dm3] 2L_10097682_SNP [dm6]	G	A	7.667e^-5	0.928	INTRON CG34109 & 1 other
3R	25398409	3R_25398409_SNP [dm3] 3R_29572687_SNP [dm6]	C	T	7.679e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18693152	X_18693152_SNP [dm3] X_18799119_SNP [dm6]	C	T	7.735e^-5	0.928	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8373242	2R_8373242_SNP [dm3] 2R_12485737_SNP [dm6]	C	T	7.790e^-5	0.928	SYNONYMOUS_CODING Dh44-R2 DOWNSTREAM CG34234	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11037850	3L_11037850_SNP [dm3] 3L_11044750_SNP [dm6]	G	A	7.795e^-5	0.928	INTRON CG43693	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	22386471	3L_22386471_SNP [dm3] 3L_22393371_SNP [dm6]	C	T	7.817e^-5	0.928	INTRON Ten-m
3R	3513428	3R_3513428_SNP [dm3] 3R_7687706_SNP [dm6]	C	T	7.862e^-5	0.928	INTRON Nlg1
2R	9888746	2R_9888746_SNP [dm3] 2R_14001241_SNP [dm6]	C	T	7.940e^-5	0.928	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25354457	3R_25354457_SNP [dm3] 3R_29528735_SNP [dm6]	G	T	8.012e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3204267	3R_3204267_INS [dm3] 3R_7378545_INS [dm6]	A	AG	8.059e^-5	0.928	INTERGENIC
2L	2823295	2L_2823295_DEL [dm3] 2L_2823295_DEL [dm6]	TCTCT	T	8.067e^-5	0.928	DOWNSTREAM CG3123 INTRON Duox
2R	8113408	2R_8113408_SNP [dm3] 2R_12225903_SNP [dm6]	G	T	8.103e^-5	0.928	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	9143032	2R_9143032_INS [dm3] 2R_13255527_INS [dm6]	T	TATTT	8.243e^-5	0.928	UPSTREAM CR44343 INTERGENIC
3R	22937787	3R_22937787_SNP [dm3] 3R_27112065_SNP [dm6]	C	T	8.265e^-5	0.928	UTR_5_PRIME gb UPSTREAM CG5815 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6658143	X_6658143_SNP [dm3] X_6764110_SNP [dm6]	A	C	8.323e^-5	0.928	SYNONYMOUS_CODING CG14438
2R	5666429	2R_5666429_SNP [dm3] 2R_9778924_SNP [dm6]	C	G	8.324e^-5	0.928	INTRON CG1688	TF binding site mE1_TFBS_chinmo
2L	15830554	2L_15830554_SNP [dm3] 2L_15830554_SNP [dm6]	A	T	8.347e^-5	0.928	INTERGENIC
2R	10339300	2R_10339300_SNP [dm3] 2R_14451795_SNP [dm6]	A	T	8.364e^-5	0.928	INTRON Oaz	TF binding site mE1_TFBS_chinmo
3L	5629439	3L_5629439_SNP [dm3] 3L_5636339_SNP [dm6]	G	T	8.440e^-5	0.928	UTR_5_PRIME Blimp-1 INTRON Blimp-1
3R	5438822	3R_5438822_SNP [dm3] 3R_9613100_SNP [dm6]	A	T	8.550e^-5	0.928	INTRON CG8312
3R	25636912	3R_25636912_SNP [dm3] 3R_29811190_SNP [dm6]	T	C	8.558e^-5	0.928	INTRON ca
2L	15100085	2L_15100085_SNP [dm3] 2L_15100085_SNP [dm6]	C	A	8.800e^-5	0.928	INTERGENIC
2L	17939631	2L_17939631_SNP [dm3] 2L_17939631_SNP [dm6]	G	T	8.811e^-5	0.928	EXON CR44399
3L	9395675	3L_9395675_SNP [dm3] 3L_9402575_SNP [dm6]	G	A	8.904e^-5	0.928	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15223820	2L_15223820_SNP [dm3] 2L_15223820_SNP [dm6]	C	G	8.939e^-5	0.928	INTERGENIC
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	9.007e^-5	0.928	INTRON Cad87A
X	9631644	X_9631644_SNP [dm3] X_9737611_SNP [dm6]	T	G	9.022e^-5	0.928	INTRON Sp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8654661	2L_8654661_DEL [dm3] 2L_8654661_DEL [dm6]	AGGACACTA	A	9.117e^-5	0.928	INTRON Sema-1a
2R	8100594	2R_8100594_SNP [dm3] 2R_12213089_SNP [dm6]	G	A	9.219e^-5	0.928	UPSTREAM Sr-CII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25636700	3R_25636700_SNP [dm3] 3R_29810978_SNP [dm6]	G	A	9.230e^-5	0.928	SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_cad
3L	22425326	3L_22425326_SNP [dm3] 3L_22432226_SNP [dm6]	G	C	9.234e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16353896	3R_16353896_INS [dm3] 3R_20528174_INS [dm6]	C	CC	9.239e^-5	0.928	INTERGENIC
3R	7741199	3R_7741199_SNP [dm3] 3R_11915477_SNP [dm6]	G	A	9.321e^-5	0.928	INTRON Cad87A
2R	16934490	2R_16934490_SNP [dm3] 2R_21046985_SNP [dm6]	G	A	9.326e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1524648	3L_1524648_SNP [dm3] 3L_1524648_SNP [dm6]	A	G	9.409e^-5	0.928	SYNONYMOUS_CODING CG12090
2R	7450915	2R_7450915_SNP [dm3] 2R_11563410_SNP [dm6]	T	A	9.456e^-5	0.928	INTERGENIC
3R	26456755	3R_26456755_SNP [dm3] 3R_30631033_SNP [dm6]	C	T	9.477e^-5	0.928	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5654332	3L_5654332_SNP [dm3] 3L_5661232_SNP [dm6]	A	T	9.570e^-5	0.928	INTRON sif & 1 other	TF binding site mE1_TFBS_sens
3L	10445927	3L_10445927_SNP [dm3] 3L_10452827_SNP [dm6]	A	C	9.579e^-5	0.928	INTERGENIC
3L	1524651	3L_1524651_SNP [dm3] 3L_1524651_SNP [dm6]	C	G	9.581e^-5	0.928	SYNONYMOUS_CODING CG12090
2R	9888923	2R_9888923_SNP [dm3] 2R_14001418_SNP [dm6]	G	A	9.650e^-5	0.928	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17300886	X_17300886_SNP [dm3] X_17406853_SNP [dm6]	G	A	9.796e^-5	0.928	INTERGENIC
3L	1270185	3L_1270185_SNP [dm3] 3L_1270185_SNP [dm6]	T	G	9.872e^-5	0.928	INTRON CG9134
3R	3204288	3R_3204288_SNP [dm3] 3R_7378566_SNP [dm6]	G	A	9.909e^-5	0.928	INTERGENIC
3R	20006693	3R_20006693_SNP [dm3] 3R_24180971_SNP [dm6]	T	A	9.918e^-5	0.928	UTR_3_PRIME CG13606 INTRON CG13606
2R	6362082	2R_6362082_SNP [dm3] 2R_10474577_SNP [dm6]	G	T	1.000e^-4	0.928	INTRON whd
2R	9889093	2R_9889093_SNP [dm3] 2R_14001588_SNP [dm6]	A	G	1.012e^-4	0.928	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9888957	2R_9888957_SNP [dm3] 2R_14001452_SNP [dm6]	A	T	1.026e^-4	0.928	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3207640	3R_3207640_SNP [dm3] 3R_7381918_SNP [dm6]	G	T	1.029e^-4	0.928	INTERGENIC
3R	26457893	3R_26457893_SNP [dm3] 3R_30632171_SNP [dm6]	G	A	1.030e^-4	0.928	INTERGENIC
3R	8134430	3R_8134430_SNP [dm3] 3R_12308708_SNP [dm6]	C	A	1.034e^-4	0.928	INTERGENIC
2R	8092572	2R_8092572_SNP [dm3] 2R_12205067_SNP [dm6]	C	T	1.048e^-4	0.928	INTERGENIC
2L	12418465	2L_12418465_SNP [dm3] 2L_12418465_SNP [dm6]	C	T	1.056e^-4	0.928	INTRON vir-1
3R	26460058	3R_26460058_SNP [dm3] 3R_30634336_SNP [dm6]	G	A	1.057e^-4	0.928	INTERGENIC
2L	10092549	2L_10092549_SNP [dm3] 2L_10092549_SNP [dm6]	C	A	1.058e^-4	0.928	UPSTREAM CG13133 INTRON CG44153
2R	7400164	2R_7400164_SNP [dm3] 2R_11512659_SNP [dm6]	A	T	1.059e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5851725	2L_5851725_SNP [dm3] 2L_5851725_SNP [dm6]	C	A	1.061e^-4	0.928	NON_SYNONYMOUS_CODING TrissinR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8090560	2R_8090560_SNP [dm3] 2R_12203055_SNP [dm6]	A	T	1.064e^-4	0.928	INTERGENIC
2L	13049334	2L_13049334_SNP [dm3] 2L_13049334_SNP [dm6]	G	A	1.068e^-4	0.928	INTRON CG9932
2R	8087300	2R_8087300_SNP [dm3] 2R_12199795_SNP [dm6]	G	T	1.075e^-4	0.928	UPSTREAM CG8858 & 2 others INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	14425021	2R_14425021_SNP [dm3] 2R_18537516_SNP [dm6]	C	G	1.086e^-4	0.928	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17951349	2L_17951349_SNP [dm3] 2L_17951349_SNP [dm6]	G	T	1.109e^-4	0.928	INTRON CR44398 & 1 other
3R	12938497	3R_12938497_SNP [dm3] 3R_17112775_SNP [dm6]	T	C	1.111e^-4	0.928	INTRON cher	TF binding site mE1_TFBS_cnc
3R	22939803	3R_22939803_SNP [dm3] 3R_27114081_SNP [dm6]	C	T	1.117e^-4	0.928	SYNONYMOUS_CODING CG5815
3R	17065433	3R_17065433_SNP [dm3] 3R_21239711_SNP [dm6]	C	T	1.118e^-4	0.928	INTERGENIC	regulatory region REDfly_CRMs
3R	25784282	3R_25784282_SNP [dm3] 3R_29958560_SNP [dm6]	T	G	1.123e^-4	0.928	INTRON TkR99D
2R	7450930	2R_7450930_SNP [dm3] 2R_11563425_SNP [dm6]	G	T	1.124e^-4	0.928	INTERGENIC
3R	12738525	3R_12738525_DEL [dm3] 3R_16912803_DEL [dm6]	AA	A	1.130e^-4	0.928	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
2R	9884474	2R_9884474_SNP [dm3] 2R_13996969_SNP [dm6]	C	T	1.135e^-4	0.928	INTRON mam	TF binding site BDTNP1_TFBS_twi
3L	6069379	3L_6069379_SNP [dm3] 3L_6076279_SNP [dm6]	T	G	1.143e^-4	0.928	UPSTREAM CG6619 DOWNSTREAM CG6610 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17352063	2L_17352063_SNP [dm3] 2L_17352063_SNP [dm6]	G	A	1.145e^-4	0.928	INTERGENIC
X	9239785	X_9239785_SNP [dm3] X_9345752_SNP [dm6]	G	C	1.147e^-4	0.928	INTRON CG34449
3R	14342229	3R_14342229_SNP [dm3] 3R_18516507_SNP [dm6]	A	G	1.148e^-4	0.928	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	9409329	2L_9409329_SNP [dm3] 2L_9409329_SNP [dm6]	T	A	1.162e^-4	0.928	INTRON Shawl
3L	18417024	3L_18417024_SNP [dm3] 3L_18423924_SNP [dm6]	G	A	1.167e^-4	0.928	INTERGENIC
3L	16932028	3L_16932028_SNP [dm3] 3L_16938928_SNP [dm6]	G	C	1.170e^-4	0.928	NON_SYNONYMOUS_CODING CG13022 DOWNSTREAM Cpr73D
3L	9041084	3L_9041084_SNP [dm3] 3L_9047984_SNP [dm6]	C	T	1.173e^-4	0.928	SYNONYMOUS_CODING CG5144 DOWNSTREAM Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	16969941	3L_16969941_SNP [dm3] 3L_16976841_SNP [dm6]	T	A	1.174e^-4	0.928	INTRON Exn
2L	18854129	2L_18854129_SNP [dm3] 2L_18854129_SNP [dm6]	C	A	1.178e^-4	0.928	SYNONYMOUS_CODING CG17321 DOWNSTREAM CG10602	TF binding site mE1_TFBS_cad
3R	3253632	3R_3253632_SNP [dm3] 3R_7427910_SNP [dm6]	C	A	1.178e^-4	0.928	INTERGENIC
3L	9041190	3L_9041190_SNP [dm3] 3L_9048090_SNP [dm6]	T	C	1.178e^-4	0.928	SYNONYMOUS_CODING CG5144 DOWNSTREAM Argk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7450926	2R_7450926_MNP [dm3] 2R_11563421_MNP [dm6]	AGA	TTT	1.181e^-4	0.928	INTERGENIC
2L	13049282	2L_13049282_SNP [dm3] 2L_13049282_SNP [dm6]	T	G	1.191e^-4	0.928	INTRON CG9932
3R	17340449	3R_17340449_DEL [dm3] 3R_21514727_DEL [dm6]	TGAA	T	1.192e^-4	0.928	INTERGENIC
3L	11037816	3L_11037816_SNP [dm3] 3L_11044716_SNP [dm6]	G	A	1.204e^-4	0.928	INTRON CG43693	TF binding site BDTNP1_TFBS_da
2R	16145479	2R_16145479_SNP [dm3] 2R_20257974_SNP [dm6]	A	T	1.205e^-4	0.928	UPSTREAM Hsl & 1 other INTRON Hsl	TF binding site mE1_TFBS_cad
3R	25726194	3R_25726194_SNP [dm3] 3R_29900472_SNP [dm6]	A	T	1.218e^-4	0.928	INTRON CG31038
3R	3222605	3R_3222605_SNP [dm3] 3R_7396883_SNP [dm6]	G	A	1.220e^-4	0.928	INTERGENIC
2R	16979654	2R_16979654_SNP [dm3] 2R_21092149_SNP [dm6]	G	T	1.224e^-4	0.928	UPSTREAM CG34396 INTERGENIC
2L	7067893	2L_7067893_SNP [dm3] 2L_7067893_SNP [dm6]	T	G	1.224e^-4	0.928	UPSTREAM CG11289 INTERGENIC
3L	10975540	3L_10975540_SNP [dm3] 3L_10982440_SNP [dm6]	T	G	1.224e^-4	0.928	UTR_3_PRIME klu	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	6742780	2R_6742780_SNP [dm3] 2R_10855275_SNP [dm6]	T	A	1.236e^-4	0.928	DOWNSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3L	5654803	3L_5654803_SNP [dm3] 3L_5661703_SNP [dm6]	T	C	1.246e^-4	0.928	NON_SYNONYMOUS_CODING Sse INTRON sif	TF binding site mE1_TFBS_sens
2R	6365484	2R_6365484_SNP [dm3] 2R_10477979_SNP [dm6]	A	C	1.249e^-4	0.928	UPSTREAM CR45134 INTRON whd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16657808	3L_16657808_SNP [dm3] 3L_16664708_SNP [dm6]	G	T	1.258e^-4	0.928	INTRON Galphaf
3L	7117459	3L_7117459_SNP [dm3] 3L_7124359_SNP [dm6]	G	T	1.273e^-4	0.928	INTRON msl-3	TF binding site mE1_TFBS_sens
3L	9395770	3L_9395770_DEL [dm3] 3L_9402670_DEL [dm6]	TTC	AA	1.276e^-4	0.928	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	14644990	3L_14644990_SNP [dm3] 3L_14651890_SNP [dm6]	C	A	1.276e^-4	0.928	INTRON dlp	TF binding site mE1_TFBS_cnc
3L	12413057	3L_12413057_INS [dm3] 3L_12419957_INS [dm6]	A	AA	1.277e^-4	0.928	INTERGENIC
3L	8455806	3L_8455806_SNP [dm3] 3L_8462706_SNP [dm6]	A	T	1.282e^-4	0.928	INTRON Gug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	5660433	2R_5660433_SNP [dm3] 2R_9772928_SNP [dm6]	G	A	1.287e^-4	0.928	INTRON CG1688
2R	8011279	2R_8011279_SNP [dm3] 2R_12123774_SNP [dm6]	G	T	1.312e^-4	0.928	INTERGENIC
2L	18751408	2L_18751408_SNP [dm3] 2L_18751408_SNP [dm6]	G	A	1.312e^-4	0.928	INTERGENIC
2R	6368704	2R_6368704_SNP [dm3] 2R_10481199_SNP [dm6]	A	T	1.322e^-4	0.928	DOWNSTREAM lola & 1 other INTRON CG17765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	15520962	3L_15520962_SNP [dm3] 3L_15527862_SNP [dm6]	C	T	1.329e^-4	0.928	NON_SYNONYMOUS_CODING CG42728 UPSTREAM CG42729 DOWNSTREAM obst-H	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	22356416	3L_22356416_SNP [dm3] 3L_22363316_SNP [dm6]	T	G	1.339e^-4	0.928	INTRON Ten-m
X	21122548	X_21122548_SNP [dm3] X_21251521_SNP [dm6]	C	G	1.347e^-4	0.928	UPSTREAM CG1722 INTRON CG32521
3R	14342310	3R_14342310_SNP [dm3] 3R_18516588_SNP [dm6]	C	A	1.349e^-4	0.928	INTRON fru	TF binding site BDTNP1_TFBS_twi
3L	16950618	3L_16950618_SNP [dm3] 3L_16957518_SNP [dm6]	C	A	1.352e^-4	0.928	UTR_5_PRIME Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7450931	2R_7450931_INS [dm3] 2R_11563426_INS [dm6]	T	TTATTTATAGGCC...	1.355e^-4	0.928	INTERGENIC
2R	9885558	2R_9885558_SNP [dm3] 2R_13998053_SNP [dm6]	T	C	1.361e^-4	0.928	INTRON mam	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	3974606	3L_3974606_SNP [dm3] 3L_3974606_SNP [dm6]	A	G	1.364e^-4	0.928	DOWNSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15327932	X_15327932_SNP [dm3] X_15433899_SNP [dm6]	C	T	1.366e^-4	0.928	INTRON Cngl	TF binding site mE1_TFBS_inv
2L	8901240	2L_8901240_SNP [dm3] 2L_8901240_SNP [dm6]	C	T	1.368e^-4	0.928	INTRON CG34398
3R	3236190	3R_3236190_SNP [dm3] 3R_7410468_SNP [dm6]	G	T	1.376e^-4	0.928	INTERGENIC
2R	19666630	2R_19666630_SNP [dm3] 2R_23779107_SNP [dm6]	G	T	1.412e^-4	0.928	NON_SYNONYMOUS_CODING CG9850
2R	9136867	2R_9136867_SNP [dm3] 2R_13249362_SNP [dm6]	A	C	1.413e^-4	0.928	DOWNSTREAM Mp20 INTRON CG4712
X	16375273	X_16375273_SNP [dm3] X_16481240_SNP [dm6]	T	A	1.414e^-4	0.928	INTRON para
2R	13564826	2R_13564826_SNP [dm3] 2R_17677321_SNP [dm6]	G	C	1.419e^-4	0.928	INTRON Sema-1b
3R	17809016	3R_17809016_SNP [dm3] 3R_21983294_SNP [dm6]	T	C	1.420e^-4	0.928	INTRON Eip93F
2R	18406884	2R_18406884_SNP [dm3] 2R_22519379_SNP [dm6]	G	T	1.435e^-4	0.928	INTRON px	TF binding site mE1_TFBS_chinmo
X	19666573	X_19666573_INS [dm3] X_19772540_INS [dm6]	T	TATACATAC	1.435e^-4	0.928	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18692747	2L_18692747_SNP [dm3] 2L_18692747_SNP [dm6]	C	T	1.441e^-4	0.928	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11270074	3L_11270074_SNP [dm3] 3L_11276974_SNP [dm6]	A	G	1.447e^-4	0.928	INTERGENIC
3L	22246875	3L_22246875_SNP [dm3] 3L_22253775_SNP [dm6]	C	G	1.452e^-4	0.928	INTERGENIC
X	6853678	X_6853678_SNP [dm3] X_6959645_SNP [dm6]	G	A	1.454e^-4	0.928	INTRON CG14431 & 1 other
3R	3252189	3R_3252189_SNP [dm3] 3R_7426467_SNP [dm6]	G	A	1.456e^-4	0.928	INTERGENIC
3R	3209156	3R_3209156_DEL [dm3] 3R_7383434_DEL [dm6]	AACT	A	1.456e^-4	0.928	INTERGENIC
X	16989211	X_16989211_SNP [dm3] X_17095178_SNP [dm6]	A	C	1.460e^-4	0.928	INTRON CG16700 & 1 other
2R	6585232	2R_6585232_SNP [dm3] 2R_10697727_SNP [dm6]	G	A	1.474e^-4	0.928	INTRON stan
2L	11917306	2L_11917306_SNP [dm3] 2L_11917306_SNP [dm6]	G	T	1.475e^-4	0.928	INTRON Pde1c
2R	17747900	2R_17747900_SNP [dm3] 2R_21860395_SNP [dm6]	T	G	1.479e^-4	0.928	UPSTREAM CG9294 INTERGENIC
2R	9847417	2R_9847417_SNP [dm3] 2R_13959912_SNP [dm6]	G	C	1.480e^-4	0.928	SYNONYMOUS_CODING Rpn13 UPSTREAM Cp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	17909122	2L_17909122_SNP [dm3] 2L_17909122_SNP [dm6]	A	C	1.483e^-4	0.928	INTERGENIC
3R	3170534	3R_3170534_SNP [dm3] 3R_7344812_SNP [dm6]	G	A	1.485e^-4	0.928	UPSTREAM CG31496 INTERGENIC
3L	16932195	3L_16932195_SNP [dm3] 3L_16939095_SNP [dm6]	G	A	1.503e^-4	0.928	UPSTREAM CG13022 DOWNSTREAM Cpr73D INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	27136606	3R_27136606_SNP [dm3] 3R_31310884_SNP [dm6]	T	A	1.504e^-4	0.928	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5377831	3L_5377831_SNP [dm3] 3L_5384731_SNP [dm6]	C	T	1.505e^-4	0.928	INTERGENIC
2R	5334189	2R_5334189_SNP [dm3] 2R_9446684_SNP [dm6]	G	A	1.505e^-4	0.928	UPSTREAM CR45321 INTRON Camta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad
2R	16934520	2R_16934520_SNP [dm3] 2R_21047015_SNP [dm6]	T	C	1.508e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4603880	3L_4603880_SNP [dm3] 3L_4603880_SNP [dm6]	A	G	1.513e^-4	0.928	INTRON Src64B
3R	26452784	3R_26452784_SNP [dm3] 3R_30627062_SNP [dm6]	T	C	1.516e^-4	0.928	DOWNSTREAM CG2267 INTERGENIC
3L	9516172	3L_9516172_SNP [dm3] 3L_9523072_SNP [dm6]	A	G	1.517e^-4	0.928	INTRON CG33700
3R	12472943	3R_12472943_SNP [dm3] 3R_16647221_SNP [dm6]	G	T	1.517e^-4	0.928	UPSTREAM Cctgamma & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2R	14373337	2R_14373337_SNP [dm3] 2R_18485832_SNP [dm6]	G	T	1.518e^-4	0.928	INTRON CG30116
X	15581655	X_15581655_SNP [dm3] X_15687622_SNP [dm6]	T	A	1.523e^-4	0.928	INTRON CG15599	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11172918	3R_11172918_SNP [dm3] 3R_15347196_SNP [dm6]	C	A	1.526e^-4	0.928	UPSTREAM CG42726 & 1 other INTRON CG31301	TF binding site BDTNP1_TFBS_dl
2L	17942422	2L_17942422_SNP [dm3] 2L_17942422_SNP [dm6]	G	A	1.528e^-4	0.928	INTERGENIC
3R	14819776	3R_14819776_SNP [dm3] 3R_18994054_SNP [dm6]	C	T	1.552e^-4	0.928	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18684237	2L_18684237_SNP [dm3] 2L_18684237_SNP [dm6]	G	A	1.552e^-4	0.928	UTR_3_PRIME msl-1 DOWNSTREAM CG31751 & 1 other
2L	10097723	2L_10097723_SNP [dm3] 2L_10097723_SNP [dm6]	C	T	1.557e^-4	0.928	INTRON CG34109 & 1 other
2R	9875176	2R_9875176_SNP [dm3] 2R_13987671_SNP [dm6]	C	T	1.559e^-4	0.928	UTR_3_PRIME RN-tre INTRON RN-tre
2R	13394909	2R_13394909_SNP [dm3] 2R_17507404_SNP [dm6]	C	T	1.559e^-4	0.928	UTR_3_PRIME CG43164 INTRON CG43164	TF binding site mE1_TFBS_cad
2R	5644050	2R_5644050_SNP [dm3] 2R_9756545_SNP [dm6]	G	A	1.568e^-4	0.928	UTR_3_PRIME CG1690 DOWNSTREAM CG1690 INTRON trpl
2R	10337913	2R_10337913_SNP [dm3] 2R_14450408_SNP [dm6]	A	T	1.568e^-4	0.928	INTRON Oaz	TF binding site mE1_TFBS_cad
2R	14373926	2R_14373926_SNP [dm3] 2R_18486421_SNP [dm6]	A	T	1.568e^-4	0.928	INTRON CG30116
2R	19239985	2R_19239985_SNP [dm3] 2R_23352462_SNP [dm6]	G	C	1.573e^-4	0.928	DOWNSTREAM CG34210 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8224919	2L_8224919_SNP [dm3] 2L_8224919_SNP [dm6]	A	G	1.580e^-4	0.928	NON_SYNONYMOUS_CODING Pvr
3L	6977471	3L_6977471_SNP [dm3] 3L_6984371_SNP [dm6]	G	C	1.584e^-4	0.928	NON_SYNONYMOUS_CODING CG32388 UTR_5_PRIME CG43439
2R	5646709	2R_5646709_DEL [dm3] 2R_9759204_DEL [dm6]	TCTAATGTC	T	1.585e^-4	0.928	INTRON trpl
3R	3864818	3R_3864818_SNP [dm3] 3R_8039096_SNP [dm6]	T	A	1.586e^-4	0.928	EXON CR44936	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
2L	14123716	2L_14123716_SNP [dm3] 2L_14123716_SNP [dm6]	A	G	1.587e^-4	0.928	INTERGENIC
3L	16930815	3L_16930815_SNP [dm3] 3L_16937715_SNP [dm6]	G	A	1.590e^-4	0.928	DOWNSTREAM CG13022 INTERGENIC
2L	15402208	2L_15402208_SNP [dm3] 2L_15402208_SNP [dm6]	G	A	1.602e^-4	0.928	INTERGENIC
2R	8090564	2R_8090564_SNP [dm3] 2R_12203059_SNP [dm6]	G	A	1.603e^-4	0.928	INTERGENIC
3L	10115235	3L_10115235_DEL [dm3] 3L_10122135_DEL [dm6]	CAACAAC	C	1.608e^-4	0.928	INTRON dpr6
2L	22956969	2L_22956969_SNP [dm3] 2L_23064237_SNP [dm6]	A	T	1.610e^-4	0.928	INTERGENIC
3L	18334215	3L_18334215_SNP [dm3] 3L_18341115_SNP [dm6]	G	A	1.610e^-4	0.928	INTERGENIC
3L	18269289	3L_18269289_SNP [dm3] 3L_18276189_SNP [dm6]	T	G	1.622e^-4	0.928	INTERGENIC
2R	16509957	2R_16509957_SNP [dm3] 2R_20622452_SNP [dm6]	C	G	1.624e^-4	0.928	NON_SYNONYMOUS_CODING CG11180	TF binding site mE1_TFBS_sens
3R	10122707	3R_10122707_DEL [dm3] 3R_14296985_DEL [dm6]	AACTACAGAAA...	A	1.624e^-4	0.928	INTRON CG12207
3L	10259573	3L_10259573_SNP [dm3] 3L_10266473_SNP [dm6]	T	C	1.626e^-4	0.928	SYNONYMOUS_CODING can	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10153801	2R_10153801_SNP [dm3] 2R_14266296_SNP [dm6]	A	G	1.628e^-4	0.928	INTRON CG8547
2L	4677430	2L_4677430_SNP [dm3] 2L_4677430_SNP [dm6]	C	T	1.634e^-4	0.928	INTERGENIC
2R	7127751	2R_7127751_SNP [dm3] 2R_11240246_SNP [dm6]	A	C	1.649e^-4	0.928	UPSTREAM CG13215 INTERGENIC	TF binding site mE1_TFBS_sens
2L	3125700	2L_3125700_SNP [dm3] 2L_3125700_SNP [dm6]	C	T	1.651e^-4	0.928	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12153668	2L_12153668_SNP [dm3] 2L_12153668_SNP [dm6]	G	T	1.655e^-4	0.928	SYNONYMOUS_CODING CG31760
2R	9888616	2R_9888616_SNP [dm3] 2R_14001111_SNP [dm6]	C	T	1.668e^-4	0.928	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8143710	3R_8143710_SNP [dm3] 3R_12317988_SNP [dm6]	C	A	1.668e^-4	0.928	INTERGENIC
2L	10012801	2L_10012801_SNP [dm3] 2L_10012801_SNP [dm6]	G	C	1.671e^-4	0.928	UTR_3_PRIME Trp1 DOWNSTREAM Trp1 & 1 other
X	11741249	X_11741249_SNP [dm3] X_11847216_SNP [dm6]	T	G	1.678e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10533925	2R_10533925_SNP [dm3] 2R_14646420_SNP [dm6]	A	G	1.685e^-4	0.928	DOWNSTREAM CG10139 INTERGENIC
2R	14646077	2R_14646077_SNP [dm3] 2R_18758572_SNP [dm6]	C	T	1.696e^-4	0.928	SPLICE_SITE_REGION Jabba SYNONYMOUS_CODING Jabba	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	3803341	3R_3803341_SNP [dm3] 3R_7977619_SNP [dm6]	C	G	1.697e^-4	0.928	UTR_5_PRIME CD98hc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	6363456	2R_6363456_INS [dm3] 2R_10475951_INS [dm6]	A	ATCA	1.698e^-4	0.928	UPSTREAM whd INTRON whd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9025095	3L_9025095_MNP [dm3] 3L_9031995_MNP [dm6]	ACAC	GAGT	1.709e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14333003	3R_14333003_SNP [dm3] 3R_18507281_SNP [dm6]	G	T	1.723e^-4	0.928	UPSTREAM fru INTRON fru	TF binding site mE1_TFBS_HSA
2R	18347222	2R_18347222_SNP [dm3] 2R_22459717_SNP [dm6]	C	A	1.724e^-4	0.928	INTRON CG10384
2R	9896575	2R_9896575_SNP [dm3] 2R_14009070_SNP [dm6]	C	G	1.737e^-4	0.928	UPSTREAM mam INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	22356427	3L_22356427_SNP [dm3] 3L_22363327_SNP [dm6]	T	G	1.741e^-4	0.928	INTRON Ten-m
3R	3184706	3R_3184706_SNP [dm3] 3R_7358984_SNP [dm6]	C	T	1.745e^-4	0.928	INTERGENIC
3R	20524191	3R_20524191_SNP [dm3] 3R_24698469_SNP [dm6]	T	G	1.747e^-4	0.928	INTRON slo
3L	9516188	3L_9516188_SNP [dm3] 3L_9523088_SNP [dm6]	T	A	1.748e^-4	0.928	INTRON CG33700
X	17163604	X_17163604_SNP [dm3] X_17269571_SNP [dm6]	A	T	1.751e^-4	0.928	INTRON f
3R	3225259	3R_3225259_SNP [dm3] 3R_7399537_SNP [dm6]	T	C	1.753e^-4	0.928	INTERGENIC
3R	3220319	3R_3220319_SNP [dm3] 3R_7394597_SNP [dm6]	T	A	1.770e^-4	0.928	INTERGENIC
2L	15403365	2L_15403365_SNP [dm3] 2L_15403365_SNP [dm6]	C	A	1.770e^-4	0.928	INTERGENIC
2L	9409339	2L_9409339_SNP [dm3] 2L_9409339_SNP [dm6]	G	A	1.772e^-4	0.928	INTRON Shawl
2L	14476473	2L_14476473_SNP [dm3] 2L_14476473_SNP [dm6]	T	A	1.775e^-4	0.928	INTERGENIC
3R	25364450	3R_25364450_SNP [dm3] 3R_29538728_SNP [dm6]	G	A	1.776e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16388013	2L_16388013_INS [dm3] 2L_16388013_INS [dm6]	G	GG	1.781e^-4	0.928	INTERGENIC
X	18974618	X_18974618_SNP [dm3] X_19080585_SNP [dm6]	T	C	1.782e^-4	0.928	INTERGENIC
2R	12237539	2R_12237539_SNP [dm3] 2R_16350034_SNP [dm6]	T	A	1.788e^-4	0.928	INTERGENIC
3R	13753150	3R_13753150_SNP [dm3] 3R_17927428_SNP [dm6]	C	T	1.791e^-4	0.928	INTRON cpo
3R	26459341	3R_26459341_SNP [dm3] 3R_30633619_SNP [dm6]	C	T	1.800e^-4	0.928	INTERGENIC
3L	5284038	3L_5284038_INS [dm3] 3L_5290938_INS [dm6]	A	AGCCAGAAAAGAAGATTTTC...	1.814e^-4	0.928	INTERGENIC
3R	8191587	3R_8191587_SNP [dm3] 3R_12365865_SNP [dm6]	C	T	1.823e^-4	0.928	UPSTREAM GstD10 DOWNSTREAM GstD9 INTERGENIC
2L	11503121	2L_11503121_SNP [dm3] 2L_11503121_SNP [dm6]	G	A	1.824e^-4	0.928	INTRON spz4
X	3761314	X_3761314_SNP [dm3] X_3867281_SNP [dm6]	G	A	1.830e^-4	0.928	UPSTREAM yin INTRON yin	TF binding site mE1_TFBS_Trl
2R	10153578	2R_10153578_SNP [dm3] 2R_14266073_SNP [dm6]	T	G	1.832e^-4	0.928	INTRON CG8547
2L	15728926	2L_15728926_SNP [dm3] 2L_15728926_SNP [dm6]	G	A	1.838e^-4	0.928	SYNONYMOUS_CODING CycE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16934517	2R_16934517_SNP [dm3] 2R_21047012_SNP [dm6]	G	C	1.848e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2552610	3L_2552610_SNP [dm3] 3L_2552610_SNP [dm6]	A	G	1.853e^-4	0.928	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6110507	2R_6110507_SNP [dm3] 2R_10223002_SNP [dm6]	C	G	1.854e^-4	0.928	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
2R	10335115	2R_10335115_SNP [dm3] 2R_14447610_SNP [dm6]	G	A	1.856e^-4	0.928	INTRON Oaz	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12330490	X_12330490_SNP [dm3] X_12436457_SNP [dm6]	G	A	1.863e^-4	0.928	INTRON Pkcdelta
3L	7118969	3L_7118969_SNP [dm3] 3L_7125869_SNP [dm6]	C	A	1.864e^-4	0.928	UPSTREAM BBS1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4760259	3R_4760259_SNP [dm3] 3R_8934537_SNP [dm6]	T	C	1.866e^-4	0.928	UPSTREAM osk EXON CR44020	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	17937818	2L_17937818_SNP [dm3] 2L_17937818_SNP [dm6]	C	T	1.870e^-4	0.928	INTERGENIC
3L	5661096	3L_5661096_SNP [dm3] 3L_5667996_SNP [dm6]	C	A	1.878e^-4	0.928	INTRON sif
2R	14626514	2R_14626514_SNP [dm3] 2R_18739009_SNP [dm6]	C	T	1.881e^-4	0.928	UTR_3_PRIME CG33998 DOWNSTREAM CR30121 INTRON Hs3st-A
3L	9395767	3L_9395767_SNP [dm3] 3L_9402667_SNP [dm6]	A	T	1.899e^-4	0.928	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16520965	2R_16520965_SNP [dm3] 2R_20633460_SNP [dm6]	A	G	1.900e^-4	0.928	UTR_5_PRIME Rcd6 DOWNSTREAM rig
2L	17940768	2L_17940768_SNP [dm3] 2L_17940768_SNP [dm6]	C	A	1.900e^-4	0.928	INTERGENIC
2R	9888819	2R_9888819_SNP [dm3] 2R_14001314_SNP [dm6]	C	T	1.905e^-4	0.928	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19373456	X_19373456_INS [dm3] X_19479423_INS [dm6]	G	GGAG	1.910e^-4	0.928	UTR_3_PRIME mRpS14 UPSTREAM Nat1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	10335231	2R_10335231_SNP [dm3] 2R_14447726_SNP [dm6]	C	T	1.914e^-4	0.928	INTRON Oaz	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	11659497	2R_11659497_SNP [dm3] 2R_15771992_SNP [dm6]	G	C	1.917e^-4	0.928	INTRON Zasp52
2R	16949061	2R_16949061_SNP [dm3] 2R_21061556_SNP [dm6]	T	C	1.926e^-4	0.928	UTR_3_PRIME mRpL54 UPSTREAM Cht8	TF binding site mE1_TFBS_sens
2L	8654603	2L_8654603_INS [dm3] 2L_8654603_INS [dm6]	C	TTGCGGTTAAGAA...	1.927e^-4	0.928	INTRON Sema-1a
2R	9177918	2R_9177918_SNP [dm3] 2R_13290413_SNP [dm6]	A	G	1.934e^-4	0.928	INTRON Dh31-R
3R	3261341	3R_3261341_SNP [dm3] 3R_7435619_SNP [dm6]	A	T	1.940e^-4	0.928	INTERGENIC
3R	11172853	3R_11172853_SNP [dm3] 3R_15347131_SNP [dm6]	G	A	1.959e^-4	0.928	SYNONYMOUS_CODING CG31301 UPSTREAM Surf4 & 2 others	TF binding site BDTNP1_TFBS_dl
2L	12140467	2L_12140467_SNP [dm3] 2L_12140467_SNP [dm6]	T	C	1.961e^-4	0.928	DOWNSTREAM Gr33a INTERGENIC
2L	2620840	2L_2620840_SNP [dm3] 2L_2620840_SNP [dm6]	T	C	1.964e^-4	0.928	DOWNSTREAM CG43403 INTERGENIC
3R	3198538	3R_3198538_SNP [dm3] 3R_7372816_SNP [dm6]	G	T	1.965e^-4	0.928	INTERGENIC
3L	20516379	3L_20516379_SNP [dm3] 3L_20523279_SNP [dm6]	T	C	1.971e^-4	0.928	SPLICE_SITE_REGION CG4825 SYNONYMOUS_CODING CG4825 DOWNSTREAM CG5104
3L	4603976	3L_4603976_SNP [dm3] 3L_4603976_SNP [dm6]	G	T	1.971e^-4	0.928	INTRON Src64B
2R	7406958	2R_7406958_SNP [dm3] 2R_11519453_SNP [dm6]	G	A	1.980e^-4	0.928	INTERGENIC
2L	3555838	2L_3555838_SNP [dm3] 2L_3555838_SNP [dm6]	T	A	1.981e^-4	0.928	INTERGENIC
2R	9849367	2R_9849367_SNP [dm3] 2R_13961862_SNP [dm6]	G	A	1.983e^-4	0.928	INTRON Cp1	TF binding site BDTNP1_TFBS_dl
2R	14806784	2R_14806784_DEL [dm3] 2R_18919279_DEL [dm6]	TAAACTGATGATTGTTAATT...	T	1.990e^-4	0.928	INTRON sano
X	19373062	X_19373062_SNP [dm3] X_19479029_SNP [dm6]	G	T	1.996e^-4	0.928	NON_SYNONYMOUS_CODING CG32533 UPSTREAM Nat1 DOWNSTREAM mRpS14	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26154574	3R_26154574_SNP [dm3] 3R_30328852_SNP [dm6]	T	A	1.996e^-4	0.928	INTRON hdc
X	19522389	X_19522389_SNP [dm3] X_19628356_SNP [dm6]	G	A	2.000e^-4	0.928	NON_SYNONYMOUS_CODING e_y_3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16772530	2R_16772530_SNP [dm3] 2R_20885025_SNP [dm6]	A	G	2.007e^-4	0.928	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	14123712	2L_14123712_SNP [dm3] 2L_14123712_SNP [dm6]	C	T	2.009e^-4	0.928	INTERGENIC
3L	14114127	3L_14114127_SNP [dm3] 3L_14121027_SNP [dm6]	G	T	2.015e^-4	0.928	INTRON Sox21b
3R	22939849	3R_22939849_SNP [dm3] 3R_27114127_SNP [dm6]	G	A	2.022e^-4	0.928	NON_SYNONYMOUS_CODING CG5815
3L	22351951	3L_22351951_SNP [dm3] 3L_22358851_SNP [dm6]	A	G	2.026e^-4	0.928	INTRON Ten-m
2R	20263327	2R_20263327_SNP [dm3] 2R_24375804_SNP [dm6]	T	C	2.051e^-4	0.928	INTRON bs	TF binding site mE1_TFBS_chinmo
3R	19442550	3R_19442550_SNP [dm3] 3R_23616828_SNP [dm6]	T	C	2.051e^-4	0.928	INTRON CG31145
2L	6410494	2L_6410494_SNP [dm3] 2L_6410494_SNP [dm6]	A	T	2.060e^-4	0.928	INTRON CG42368
3L	9516173	3L_9516173_SNP [dm3] 3L_9523073_SNP [dm6]	G	C	2.065e^-4	0.928	INTRON CG33700
X	18446528	X_18446528_SNP [dm3] X_18552495_SNP [dm6]	C	G	2.065e^-4	0.928	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12707218	2R_12707218_SNP [dm3] 2R_16819713_SNP [dm6]	G	A	2.065e^-4	0.928	UPSTREAM CR43417 INTERGENIC
2R	10149602	2R_10149602_SNP [dm3] 2R_14262097_SNP [dm6]	C	G	2.072e^-4	0.928	SYNONYMOUS_CODING CG8547 DOWNSTREAM beta4GalNAcTA
3L	9395768	3L_9395768_SNP [dm3] 3L_9402668_SNP [dm6]	C	G	2.072e^-4	0.928	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18406749	2R_18406749_SNP [dm3] 2R_22519244_SNP [dm6]	T	C	2.078e^-4	0.928	INTRON px
2L	9409309	2L_9409309_INS [dm3] 2L_9409309_INS [dm6]	C	TG	2.085e^-4	0.928	INTRON Shawl
2R	15578079	2R_15578079_SNP [dm3] 2R_19690574_SNP [dm6]	A	G	2.101e^-4	0.928	UPSTREAM CG15126 INTERGENIC
3R	16353837	3R_16353837_SNP [dm3] 3R_20528115_SNP [dm6]	C	T	2.103e^-4	0.928	INTERGENIC
3L	14650580	3L_14650580_SNP [dm3] 3L_14657480_SNP [dm6]	T	C	2.109e^-4	0.928	INTRON dlp
3R	3190953	3R_3190953_SNP [dm3] 3R_7365231_SNP [dm6]	C	T	2.116e^-4	0.928	UTR_3_PRIME Mst84Db UPSTREAM Mst84Dc & 1 other DOWNSTREAM MstProx
2L	13881208	2L_13881208_SNP [dm3] 2L_13881208_SNP [dm6]	C	A	2.116e^-4	0.928	INTRON CenG1A
X	5815192	X_5815192_SNP [dm3] X_5921159_SNP [dm6]	T	C	2.125e^-4	0.928	INTRON CG3726
3L	9248319	3L_9248319_SNP [dm3] 3L_9255219_SNP [dm6]	A	C	2.125e^-4	0.928	INTRON GluRIB
X	15312345	X_15312345_SNP [dm3] X_15418312_SNP [dm6]	T	C	2.127e^-4	0.928	INTRON Cngl
X	2802120	X_2802120_SNP [dm3] X_2908087_SNP [dm6]	C	A	2.132e^-4	0.928	INTRON kirre
2R	20114500	2R_20114500_SNP [dm3] 2R_24226977_SNP [dm6]	C	A	2.132e^-4	0.928	INTRON CG30419
2R	4192646	2R_4192646_SNP [dm3] 2R_8305141_SNP [dm6]	G	A	2.134e^-4	0.928	DOWNSTREAM CR44447 INTERGENIC
2L	14123755	2L_14123755_SNP [dm3] 2L_14123755_SNP [dm6]	C	T	2.154e^-4	0.928	INTERGENIC
3L	18090947	3L_18090947_SNP [dm3] 3L_18097847_SNP [dm6]	C	T	2.155e^-4	0.928	INTRON CG13698
3R	20006606	3R_20006606_SNP [dm3] 3R_24180884_SNP [dm6]	C	T	2.162e^-4	0.928	UTR_3_PRIME CG13606 INTRON CG13606
3R	3912649	3R_3912649_SNP [dm3] 3R_8086927_SNP [dm6]	T	A	2.164e^-4	0.928	UTR_3_PRIME mAChR-B UPSTREAM CG7910
2R	5646275	2R_5646275_SNP [dm3] 2R_9758770_SNP [dm6]	G	A	2.164e^-4	0.928	UPSTREAM CG1690 INTRON trpl
2R	16948297	2R_16948297_SNP [dm3] 2R_21060792_SNP [dm6]	G	A	2.169e^-4	0.928	START_GAINED mRpL54 UTR_5_PRIME mRpL54 UPSTREAM CG15653 & 1 other DOWNSTREAM cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	3221101	3R_3221101_SNP [dm3] 3R_7395379_SNP [dm6]	A	G	2.180e^-4	0.928	INTERGENIC
3R	3217179	3R_3217179_SNP [dm3] 3R_7391457_SNP [dm6]	T	C	2.192e^-4	0.928	UTR_5_PRIME CG42650
2R	9885414	2R_9885414_SNP [dm3] 2R_13997909_SNP [dm6]	T	C	2.195e^-4	0.928	INTRON mam	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	8229071	2L_8229071_INS [dm3] 2L_8229071_INS [dm6]	A	ACAATA	2.195e^-4	0.928	INTRON Pvr
2R	15721110	2R_15721110_SNP [dm3] 2R_19833605_SNP [dm6]	A	G	2.205e^-4	0.928	DOWNSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9889720	2R_9889720_INS [dm3] 2R_14002215_INS [dm6]	A	AAAA	2.208e^-4	0.928	INTRON mam	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5653818	3L_5653818_SNP [dm3] 3L_5660718_SNP [dm6]	C	A	2.211e^-4	0.928	NON_SYNONYMOUS_CODING Sse INTRON sif
3L	5938052	3L_5938052_SNP [dm3] 3L_5944952_SNP [dm6]	G	A	2.213e^-4	0.928	INTRON CG33993
3R	3221113	3R_3221113_SNP [dm3] 3R_7395391_SNP [dm6]	T	C	2.216e^-4	0.928	INTERGENIC
2R	7275298	2R_7275298_SNP [dm3] 2R_11387793_SNP [dm6]	A	C	2.222e^-4	0.928	NON_SYNONYMOUS_CODING CG30022 INTRON sprt
3R	3243217	3R_3243217_SNP [dm3] 3R_7417495_SNP [dm6]	C	A	2.222e^-4	0.928	INTERGENIC
3L	9303776	3L_9303776_SNP [dm3] 3L_9310676_SNP [dm6]	T	A	2.225e^-4	0.928	INTERGENIC
2L	9409426	2L_9409426_SNP [dm3] 2L_9409426_SNP [dm6]	A	G	2.231e^-4	0.928	INTRON Shawl
2L	7170397	2L_7170397_SNP [dm3] 2L_7170397_SNP [dm6]	A	G	2.236e^-4	0.928	INTERGENIC
3R	27134712	3R_27134712_SNP [dm3] 3R_31308990_SNP [dm6]	T	C	2.237e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15509307	2L_15509307_SNP [dm3] 2L_15509307_SNP [dm6]	A	C	2.245e^-4	0.928	INTERGENIC
2L	11439870	2L_11439870_SNP [dm3] 2L_11439870_SNP [dm6]	T	A	2.246e^-4	0.928	NON_SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11437415	2L_11437415_SNP [dm3] 2L_11437415_SNP [dm6]	G	T	2.246e^-4	0.928	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10226755	3R_10226755_SNP [dm3] 3R_14401033_SNP [dm6]	C	T	2.248e^-4	0.928	INTRON cv-c
3R	3202756	3R_3202756_SNP [dm3] 3R_7377034_SNP [dm6]	G	A	2.248e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14129681	2L_14129681_DEL [dm3] 2L_14129681_DEL [dm6]	TAAAC	T	2.264e^-4	0.928	INTERGENIC
2L	11813713	2L_11813713_DEL [dm3] 2L_11813713_DEL [dm6]	TT	T	2.285e^-4	0.928	DOWNSTREAM Pde1c INTRON CycY	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	14123684	2L_14123684_SNP [dm3] 2L_14123684_SNP [dm6]	A	C	2.290e^-4	0.928	INTERGENIC
3R	3196017	3R_3196017_SNP [dm3] 3R_7370295_SNP [dm6]	G	A	2.292e^-4	0.928	UPSTREAM MstProx INTERGENIC
3L	10121079	3L_10121079_SNP [dm3] 3L_10127979_SNP [dm6]	T	A	2.300e^-4	0.928	INTRON dpr6
2R	4227979	2R_4227979_SNP [dm3] 2R_8340474_SNP [dm6]	G	A	2.302e^-4	0.928	INTRON pdm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	6234355	2L_6234355_SNP [dm3] 2L_6234355_SNP [dm6]	T	A	2.303e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	8087999	2R_8087999_SNP [dm3] 2R_12200494_SNP [dm6]	G	A	2.303e^-4	0.928	SYNONYMOUS_CODING RpS11 UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	17933594	3R_17933594_SNP [dm3] 3R_22107872_SNP [dm6]	G	C	2.305e^-4	0.928	INTRON CG5778
3L	14644851	3L_14644851_SNP [dm3] 3L_14651751_SNP [dm6]	T	A	2.325e^-4	0.928	INTRON dlp	TF binding site mE1_TFBS_cnc
X	12139251	X_12139251_SNP [dm3] X_12245218_SNP [dm6]	C	T	2.331e^-4	0.928	INTRON Ten-a
3R	6724126	3R_6724126_SNP [dm3] 3R_10898404_SNP [dm6]	T	C	2.332e^-4	0.928	EXON CR45578	TF binding site mE1_TFBS_sbb
2R	8087306	2R_8087306_SNP [dm3] 2R_12199801_SNP [dm6]	G	C	2.344e^-4	0.928	UPSTREAM CG8858 & 2 others INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	21265546	3L_21265546_SNP [dm3] 3L_21272446_SNP [dm6]	A	T	2.346e^-4	0.928	INTRON AcCoAS
2R	9849093	2R_9849093_SNP [dm3] 2R_13961588_SNP [dm6]	A	G	2.360e^-4	0.928	INTRON Cp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	22900476	3R_22900476_SNP [dm3] 3R_27074754_SNP [dm6]	T	C	2.361e^-4	0.928	INTERGENIC
2R	12969093	2R_12969093_DEL [dm3] 2R_17081588_DEL [dm6]	TT	T	2.367e^-4	0.928	UTR_5_PRIME CG30460
3L	22351903	3L_22351903_SNP [dm3] 3L_22358803_SNP [dm6]	C	A	2.368e^-4	0.928	INTRON Ten-m
X	14720783	X_14720783_SNP [dm3] X_14826750_SNP [dm6]	G	T	2.370e^-4	0.928	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8092654	2R_8092654_SNP [dm3] 2R_12205149_SNP [dm6]	A	T	2.374e^-4	0.928	UPSTREAM CR45276 INTERGENIC
X	15311826	X_15311826_SNP [dm3] X_15417793_SNP [dm6]	G	A	2.374e^-4	0.928	INTRON Cngl
3L	18831598	3L_18831598_SNP [dm3] 3L_18838498_SNP [dm6]	A	T	2.377e^-4	0.928	INTRON Indy	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14373327	2R_14373327_SNP [dm3] 2R_18485822_SNP [dm6]	G	T	2.378e^-4	0.928	INTRON CG30116
2R	19415959	2R_19415959_SNP [dm3] 2R_23528436_SNP [dm6]	G	A	2.378e^-4	0.928	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
3R	19863723	3R_19863723_SNP [dm3] 3R_24038001_SNP [dm6]	T	C	2.385e^-4	0.928	UTR_5_PRIME Miro UPSTREAM spas & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	6743131	2R_6743131_SNP [dm3] 2R_10855626_SNP [dm6]	A	G	2.392e^-4	0.928	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2L	10769614	2L_10769614_SNP [dm3] 2L_10769614_SNP [dm6]	G	A	2.399e^-4	0.928	SPLICE_SITE_REGION CG6724 SYNONYMOUS_CODING CG6724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	4641690	3L_4641690_SNP [dm3] 3L_4641690_SNP [dm6]	G	T	2.402e^-4	0.928	DOWNSTREAM axo INTRON axo
2L	18641181	2L_18641181_SNP [dm3] 2L_18641181_SNP [dm6]	A	G	2.407e^-4	0.928	INTRON MESR3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3237145	3R_3237145_SNP [dm3] 3R_7411423_SNP [dm6]	T	C	2.408e^-4	0.928	INTERGENIC
3L	4728271	3L_4728271_SNP [dm3] 3L_4728271_SNP [dm6]	A	T	2.410e^-4	0.928	INTRON RhoGEF64C
3R	3199229	3R_3199229_SNP [dm3] 3R_7373507_SNP [dm6]	G	T	2.414e^-4	0.928	INTERGENIC
3L	5140610	3L_5140610_SNP [dm3] 3L_5147510_SNP [dm6]	T	C	2.422e^-4	0.928	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10034807	2L_10034807_SNP [dm3] 2L_10034807_SNP [dm6]	A	T	2.423e^-4	0.928	INTRON obst-B
2R	9844244	2R_9844244_SNP [dm3] 2R_13956739_SNP [dm6]	G	T	2.435e^-4	0.928	INTRON AGO1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	27170901	3R_27170901_SNP [dm3] 3R_31345179_SNP [dm6]	C	A	2.441e^-4	0.928	INTRON CG34347	TF binding site mE1_TFBS_chinmo
3R	14530156	3R_14530156_SNP [dm3] 3R_18704434_SNP [dm6]	G	A	2.445e^-4	0.928	INTERGENIC
3R	20231620	3R_20231620_SNP [dm3] 3R_24405898_SNP [dm6]	G	A	2.461e^-4	0.928	INTRON nAChRalpha1
X	18647197	X_18647197_SNP [dm3] X_18753164_SNP [dm6]	G	T	2.472e^-4	0.928	INTERGENIC
2L	12605173	2L_12605173_SNP [dm3] 2L_12605173_SNP [dm6]	A	T	2.477e^-4	0.928	INTRON nub	TF binding site BDTNP1_TFBS_da
2L	16260408	2L_16260408_SNP [dm3] 2L_16260408_SNP [dm6]	G	A	2.480e^-4	0.928	SYNONYMOUS_CODING twe DOWNSTREAM EndoGI	TF binding site mE1_TFBS_cad
X	6139023	X_6139023_INS [dm3] X_6244990_INS [dm6]	A	ATGTATC	2.490e^-4	0.928	INTRON Rbcn-3A	TF binding site mE1_TFBS_chinmo
2R	14883042	2R_14883042_SNP [dm3] 2R_18995537_SNP [dm6]	A	G	2.501e^-4	0.928	DOWNSTREAM snoRNA:abba-a INTRON tn
2R	9886937	2R_9886937_SNP [dm3] 2R_13999432_SNP [dm6]	C	T	2.501e^-4	0.928	INTRON mam	TF binding site BDTNP1_TFBS_dl
3R	6090901	3R_6090901_SNP [dm3] 3R_10265179_SNP [dm6]	A	T	2.503e^-4	0.928	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1816930	3L_1816930_SNP [dm3] 3L_1816930_SNP [dm6]	A	T	2.507e^-4	0.928	INTRON GV1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14493160	2L_14493160_SNP [dm3] 2L_14493160_SNP [dm6]	A	G	2.512e^-4	0.928	SYNONYMOUS_STOP noc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8011328	2R_8011328_SNP [dm3] 2R_12123823_SNP [dm6]	C	T	2.513e^-4	0.928	INTERGENIC
3L	14114122	3L_14114122_SNP [dm3] 3L_14121022_SNP [dm6]	C	T	2.517e^-4	0.928	INTRON Sox21b
3R	3197497	3R_3197497_SNP [dm3] 3R_7371775_SNP [dm6]	A	C	2.518e^-4	0.928	INTERGENIC
3L	1047134	3L_1047134_SNP [dm3] 3L_1047134_SNP [dm6]	G	A	2.526e^-4	0.928	INTRON bab1
2R	20114488	2R_20114488_SNP [dm3] 2R_24226965_SNP [dm6]	T	A	2.527e^-4	0.928	INTRON CG30419
2R	8092696	2R_8092696_SNP [dm3] 2R_12205191_SNP [dm6]	C	A	2.529e^-4	0.928	UPSTREAM CR45276 INTERGENIC
3R	3254300	3R_3254300_SNP [dm3] 3R_7428578_SNP [dm6]	T	G	2.533e^-4	0.928	INTERGENIC
3L	10259163	3L_10259163_SNP [dm3] 3L_10266063_SNP [dm6]	C	T	2.540e^-4	0.928	SYNONYMOUS_CODING can	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5528875	3R_5528875_SNP [dm3] 3R_9703153_SNP [dm6]	G	A	2.550e^-4	0.928	INTRON Unc-115a	TF binding site BDTNP1_TFBS_da
2L	15553867	2L_15553867_SNP [dm3] 2L_15553867_SNP [dm6]	G	T	2.550e^-4	0.928	INTRON kek3
3R	3269879	3R_3269879_SNP [dm3] 3R_7444157_SNP [dm6]	C	G	2.550e^-4	0.928	INTERGENIC
3R	8153237	3R_8153237_SNP [dm3] 3R_12327515_SNP [dm6]	C	T	2.557e^-4	0.928	EXON CR45584
2R	8078384	2R_8078384_SNP [dm3] 2R_12190879_SNP [dm6]	C	T	2.559e^-4	0.928	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2R	15437330	2R_15437330_SNP [dm3] 2R_19549825_SNP [dm6]	A	G	2.562e^-4	0.928	INTRON sm
3R	24259075	3R_24259075_SNP [dm3] 3R_28433353_SNP [dm6]	A	G	2.564e^-4	0.928	INTRON beat-VI
2R	14357361	2R_14357361_SNP [dm3] 2R_18469856_SNP [dm6]	G	A	2.569e^-4	0.928	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2867596	2L_2867596_SNP [dm3] 2L_2867596_SNP [dm6]	T	C	2.571e^-4	0.928	SYNONYMOUS_CODING CG2991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10337917	2R_10337917_SNP [dm3] 2R_14450412_SNP [dm6]	A	T	2.575e^-4	0.928	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	17908683	2L_17908683_SNP [dm3] 2L_17908683_SNP [dm6]	C	A	2.577e^-4	0.928	INTERGENIC
3L	9396676	3L_9396676_SNP [dm3] 3L_9403576_SNP [dm6]	G	A	2.582e^-4	0.928	INTERGENIC
2R	5646802	2R_5646802_INS [dm3] 2R_9759297_INS [dm6]	T	AA	2.583e^-4	0.928	INTRON trpl
3L	14204336	3L_14204336_DEL [dm3] 3L_14211236_DEL [dm6]	AG	T	2.592e^-4	0.928	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	19795673	3R_19795673_SNP [dm3] 3R_23969951_SNP [dm6]	G	T	2.596e^-4	0.928	INTRON CG31140
2R	14885298	2R_14885298_SNP [dm3] 2R_18997793_SNP [dm6]	A	G	2.597e^-4	0.928	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18438158	3L_18438158_INS [dm3] 3L_18445058_INS [dm6]	G	GCTTTTTAGG	2.598e^-4	0.928	INTERGENIC
2R	18075073	2R_18075073_SNP [dm3] 2R_22187568_SNP [dm6]	T	C	2.598e^-4	0.928	SYNONYMOUS_CODING Vps35	TF binding site mE1_TFBS_sens
3R	15261441	3R_15261441_SNP [dm3] 3R_19435719_SNP [dm6]	C	G	2.606e^-4	0.928	INTRON CG31221
3L	4641821	3L_4641821_SNP [dm3] 3L_4641821_SNP [dm6]	T	A	2.607e^-4	0.928	DOWNSTREAM axo INTRON axo
X	15134124	X_15134124_SNP [dm3] X_15240091_SNP [dm6]	G	A	2.610e^-4	0.928	INTERGENIC
2R	10091864	2R_10091864_SNP [dm3] 2R_14204359_SNP [dm6]	A	T	2.614e^-4	0.928	INTRON Sox15	regulatory region REDfly_CRMs
3L	16494059	3L_16494059_SNP [dm3] 3L_16500959_SNP [dm6]	G	A	2.631e^-4	0.928	DOWNSTREAM st INTRON CG43373
2R	8092783	2R_8092783_SNP [dm3] 2R_12205278_SNP [dm6]	G	T	2.633e^-4	0.928	UPSTREAM CR45276 INTERGENIC
2R	14373325	2R_14373325_SNP [dm3] 2R_18485820_SNP [dm6]	A	G	2.638e^-4	0.928	INTRON CG30116
3L	5281992	3L_5281992_SNP [dm3] 3L_5288892_SNP [dm6]	T	A	2.638e^-4	0.928	INTERGENIC
2R	14883056	2R_14883056_SNP [dm3] 2R_18995551_SNP [dm6]	T	G	2.648e^-4	0.928	DOWNSTREAM snoRNA:abba-a INTRON tn
2R	9872454	2R_9872454_SNP [dm3] 2R_13984949_SNP [dm6]	C	A	2.660e^-4	0.928	UTR_3_PRIME RN-tre DOWNSTREAM CG8067
2R	4191730	2R_4191730_SNP [dm3] 2R_8304225_SNP [dm6]	G	T	2.661e^-4	0.928	UPSTREAM CR44447 INTERGENIC
2R	1076296	2R_1076296_SNP [dm3] 2R_5188791_SNP [dm6]	T	C	2.666e^-4	0.928	INTRON Nipped-A
3R	15196863	3R_15196863_SNP [dm3] 3R_19371141_SNP [dm6]	C	T	2.675e^-4	0.928	SYNONYMOUS_CODING Ino80
3R	5920223	3R_5920223_SNP [dm3] 3R_10094501_SNP [dm6]	T	A	2.679e^-4	0.928	EXON CR43459
2L	12126054	2L_12126054_SNP [dm3] 2L_12126054_SNP [dm6]	A	G	2.681e^-4	0.928	SYNONYMOUS_CODING CG17211
3L	5653701	3L_5653701_SNP [dm3] 3L_5660601_SNP [dm6]	C	T	2.682e^-4	0.928	SYNONYMOUS_CODING Sse INTRON sif
3R	3280108	3R_3280108_SNP [dm3] 3R_7454386_SNP [dm6]	C	G	2.683e^-4	0.928	INTERGENIC
3L	9567725	3L_9567725_SNP [dm3] 3L_9574625_SNP [dm6]	C	T	2.686e^-4	0.928	INTRON CG42673
3L	5667753	3L_5667753_SNP [dm3] 3L_5674653_SNP [dm6]	C	T	2.689e^-4	0.928	SYNONYMOUS_CODING sif	TF binding site mE1_TFBS_chinmo
X	7997451	X_7997451_SNP [dm3] X_8103418_SNP [dm6]	T	A	2.699e^-4	0.928	UTR_3_PRIME Gclc
2R	16934511	2R_16934511_INS [dm3] 2R_21047006_INS [dm6]	C	CA	2.699e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20263303	2R_20263303_SNP [dm3] 2R_24375780_SNP [dm6]	A	G	2.702e^-4	0.928	INTRON bs	TF binding site mE1_TFBS_chinmo
2L	746155	2L_746155_SNP [dm3] 2L_746155_SNP [dm6]	A	T	2.702e^-4	0.928	INTERGENIC
2R	7068260	2R_7068260_SNP [dm3] 2R_11180755_SNP [dm6]	C	T	2.714e^-4	0.928	INTRON shn
3L	5284046	3L_5284046_SNP [dm3] 3L_5290946_SNP [dm6]	G	A	2.720e^-4	0.928	INTERGENIC
2L	3422330	2L_3422330_SNP [dm3] 2L_3422330_SNP [dm6]	C	T	2.722e^-4	0.928	INTRON pgant2
3R	12567384	3R_12567384_SNP [dm3] 3R_16741662_SNP [dm6]	C	G	2.723e^-4	0.928	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
X	12903333	X_12903333_SNP [dm3] X_13009300_SNP [dm6]	T	C	2.738e^-4	0.928	INTRON rad
3L	5667345	3L_5667345_DEL [dm3] 3L_5674245_DEL [dm6]	TTTAG	T	2.745e^-4	0.928	INTRON sif	TF binding site mE1_TFBS_chinmo
3R	17521472	3R_17521472_SNP [dm3] 3R_21695750_SNP [dm6]	T	C	2.745e^-4	0.928	INTRON CG31176
3L	22247071	3L_22247071_SNP [dm3] 3L_22253971_SNP [dm6]	G	A	2.745e^-4	0.928	INTERGENIC
3R	22939857	3R_22939857_SNP [dm3] 3R_27114135_SNP [dm6]	G	C	2.757e^-4	0.928	NON_SYNONYMOUS_CODING CG5815
3R	18847264	3R_18847264_SNP [dm3] 3R_23021542_SNP [dm6]	A	G	2.757e^-4	0.928	UTR_3_PRIME lmd
3L	4881977	3L_4881977_SNP [dm3] 3L_4881977_SNP [dm6]	C	G	2.757e^-4	0.928	INTRON CG17150
2L	7968297	2L_7968297_SNP [dm3] 2L_7968297_SNP [dm6]	T	G	2.759e^-4	0.928	INTRON Snoo
3L	9396652	3L_9396652_SNP [dm3] 3L_9403552_SNP [dm6]	A	T	2.760e^-4	0.928	INTERGENIC
2L	4231851	2L_4231851_SNP [dm3] 2L_4231851_SNP [dm6]	C	T	2.762e^-4	0.928	INTERGENIC
3R	5282344	3R_5282344_SNP [dm3] 3R_9456622_SNP [dm6]	G	A	2.776e^-4	0.928	UPSTREAM GstZ1 DOWNSTREAM GstZ2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12471363	3R_12471363_SNP [dm3] 3R_16645641_SNP [dm6]	T	A	2.784e^-4	0.928	NON_SYNONYMOUS_CODING CG10324 DOWNSTREAM CG10326
X	17200725	X_17200725_DEL [dm3] X_17306692_DEL [dm6]	CTCAACC	G	2.785e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10820274	2L_10820274_SNP [dm3] 2L_10820274_SNP [dm6]	C	T	2.786e^-4	0.928	SYNONYMOUS_CODING CG6508 UPSTREAM CG17134 INTRON Nos	TF binding site mE1_TFBS_cad
2L	7502701	2L_7502701_SNP [dm3] 2L_7502701_SNP [dm6]	G	A	2.803e^-4	0.928	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9840492	2R_9840492_SNP [dm3] 2R_13952987_SNP [dm6]	G	T	2.804e^-4	0.928	INTRON AGO1	TF binding site BDTNP1_TFBS_dl
2R	20263307	2R_20263307_SNP [dm3] 2R_24375784_SNP [dm6]	C	T	2.805e^-4	0.928	INTRON bs	TF binding site mE1_TFBS_chinmo
2R	20263344	2R_20263344_SNP [dm3] 2R_24375821_SNP [dm6]	C	A	2.805e^-4	0.928	INTRON bs	TF binding site mE1_TFBS_chinmo
3R	22938046	3R_22938046_SNP [dm3] 3R_27112324_SNP [dm6]	T	A	2.805e^-4	0.928	UPSTREAM CG5815 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	3175323	3R_3175323_SNP [dm3] 3R_7349601_SNP [dm6]	C	A	2.810e^-4	0.928	UPSTREAM CG43290 INTERGENIC
X	18863183	X_18863183_SNP [dm3] X_18969150_SNP [dm6]	G	A	2.828e^-4	0.928	INTRON CG43759	TF binding site mE1_TFBS_inv
3R	8660842	3R_8660842_SNP [dm3] 3R_12835120_SNP [dm6]	A	T	2.832e^-4	0.928	INTERGENIC
3L	5668406	3L_5668406_SNP [dm3] 3L_5675306_SNP [dm6]	C	G	2.835e^-4	0.928	INTRON sif
3L	18073129	3L_18073129_SNP [dm3] 3L_18080029_SNP [dm6]	C	A	2.836e^-4	0.928	INTERGENIC
X	3518873	X_3518873_SNP [dm3] X_3624840_SNP [dm6]	A	T	2.844e^-4	0.928	INTRON AstA-R1
X	13182667	X_13182667_SNP [dm3] X_13288634_SNP [dm6]	T	C	2.852e^-4	0.928	DOWNSTREAM CG15743 INTRON CG15744	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	13308306	3R_13308306_SNP [dm3] 3R_17482584_SNP [dm6]	A	T	2.855e^-4	0.928	UTR_3_PRIME Dscam3 INTRON Dscam3
3R	3203956	3R_3203956_SNP [dm3] 3R_7378234_SNP [dm6]	G	A	2.861e^-4	0.928	INTERGENIC
2R	8350845	2R_8350845_SNP [dm3] 2R_12463340_SNP [dm6]	G	T	2.870e^-4	0.928	INTRON Lac	TF binding site BDTNP1_TFBS_dl
2L	11303739	2L_11303739_SNP [dm3] 2L_11303739_SNP [dm6]	C	A	2.874e^-4	0.928	INTERGENIC
X	22029629	X_22029629_SNP [dm3] X_22627793_SNP [dm6]	C	A	2.883e^-4	0.928	INTRON Cda4
3L	16861138	3L_16861138_SNP [dm3] 3L_16868038_SNP [dm6]	A	T	2.886e^-4	0.928	INTRON Lmpt
X	15312326	X_15312326_SNP [dm3] X_15418293_SNP [dm6]	A	C	2.889e^-4	0.928	INTRON Cngl
2L	15407790	2L_15407790_SNP [dm3] 2L_15407790_SNP [dm6]	C	T	2.894e^-4	0.928	INTERGENIC
2R	8112843	2R_8112843_SNP [dm3] 2R_12225338_SNP [dm6]	T	C	2.896e^-4	0.928	INTRON CG8854
2L	5595878	2L_5595878_SNP [dm3] 2L_5595878_SNP [dm6]	G	A	2.896e^-4	0.928	UPSTREAM CG18266 INTERGENIC
2R	10337932	2R_10337932_SNP [dm3] 2R_14450427_SNP [dm6]	A	T	2.899e^-4	0.928	INTRON Oaz	TF binding site mE1_TFBS_cad
2R	6134395	2R_6134395_SNP [dm3] 2R_10246890_SNP [dm6]	G	A	2.900e^-4	0.928	UPSTREAM CG12914 DOWNSTREAM Hdc INTRON CG12209	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6134401	2R_6134401_SNP [dm3] 2R_10246896_SNP [dm6]	A	G	2.900e^-4	0.928	SPLICE_SITE_REGION CG12209 UPSTREAM CG12914 DOWNSTREAM Hdc INTRON CG12209	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14449971	2R_14449971_SNP [dm3] 2R_18562466_SNP [dm6]	T	C	2.917e^-4	0.928	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3841601	2L_3841601_SNP [dm3] 2L_3841601_SNP [dm6]	G	T	2.921e^-4	0.928	INTERGENIC
3R	7737426	3R_7737426_SNP [dm3] 3R_11911704_SNP [dm6]	A	G	2.921e^-4	0.928	INTRON Cad87A
3L	22401085	3L_22401085_SNP [dm3] 3L_22407985_SNP [dm6]	G	A	2.927e^-4	0.928	UPSTREAM Ten-m INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
X	3761310	X_3761310_SNP [dm3] X_3867277_SNP [dm6]	C	T	2.936e^-4	0.928	UPSTREAM yin INTRON yin	TF binding site mE1_TFBS_Trl
2L	14124009	2L_14124009_SNP [dm3] 2L_14124009_SNP [dm6]	G	C	2.940e^-4	0.928	INTERGENIC
3R	7554809	3R_7554809_DEL [dm3] 3R_11729087_DEL [dm6]	AT	A	2.942e^-4	0.928	INTRON CG12594
3L	11037326	3L_11037326_SNP [dm3] 3L_11044226_SNP [dm6]	G	A	2.953e^-4	0.928	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
3R	3211726	3R_3211726_SNP [dm3] 3R_7386004_SNP [dm6]	A	G	2.964e^-4	0.928	INTERGENIC
X	6656941	X_6656941_SNP [dm3] X_6762908_SNP [dm6]	T	C	2.976e^-4	0.928	NON_SYNONYMOUS_CODING CG14438	TF binding site mE1_TFBS_sens
X	14721362	X_14721362_SNP [dm3] X_14827329_SNP [dm6]	G	T	2.978e^-4	0.928	UTR_3_PRIME CG14408 DOWNSTREAM CG14408
2R	5646811	2R_5646811_INS [dm3] 2R_9759306_INS [dm6]	A	ACCAACT	2.994e^-4	0.928	INTRON trpl
3L	3003974	3L_3003974_SNP [dm3] 3L_3003974_SNP [dm6]	T	A	2.995e^-4	0.928	INTRON FMRFaR
3R	6091038	3R_6091038_SNP [dm3] 3R_10265316_SNP [dm6]	A	T	3.002e^-4	0.928	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	22936428	2L_22936428_SNP [dm3] 2L_23043696_SNP [dm6]	G	A	3.003e^-4	0.928	INTERGENIC
2L	17938836	2L_17938836_SNP [dm3] 2L_17938836_SNP [dm6]	A	G	3.004e^-4	0.928	DOWNSTREAM CR44399 INTERGENIC
X	15312368	X_15312368_SNP [dm3] X_15418335_SNP [dm6]	C	T	3.005e^-4	0.928	INTRON Cngl
2L	14476551	2L_14476551_SNP [dm3] 2L_14476551_SNP [dm6]	T	A	3.006e^-4	0.928	INTERGENIC
2R	13846579	2R_13846579_SNP [dm3] 2R_17959074_SNP [dm6]	A	T	3.009e^-4	0.928	INTERGENIC
X	6139099	X_6139099_SNP [dm3] X_6245066_SNP [dm6]	T	C	3.013e^-4	0.928	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_chinmo
3L	3020274	3L_3020274_SNP [dm3] 3L_3020274_SNP [dm6]	G	T	3.018e^-4	0.928	INTERGENIC
3L	12086256	3L_12086256_INS [dm3] 3L_12093156_INS [dm6]	T	TGTAT	3.020e^-4	0.928	INTERGENIC
X	9631648	X_9631648_SNP [dm3] X_9737615_SNP [dm6]	T	G	3.021e^-4	0.928	INTRON Sp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16507517	2R_16507517_SNP [dm3] 2R_20620012_SNP [dm6]	G	T	3.023e^-4	0.928	SYNONYMOUS_CODING CG9945 DOWNSTREAM CG11180	TF binding site mE1_TFBS_sens
3R	13475621	3R_13475621_SNP [dm3] 3R_17649899_SNP [dm6]	C	A	3.026e^-4	0.928	INTRON CG14322
3L	14114126	3L_14114126_SNP [dm3] 3L_14121026_SNP [dm6]	A	C	3.032e^-4	0.928	INTRON Sox21b
3R	3233869	3R_3233869_SNP [dm3] 3R_7408147_SNP [dm6]	A	T	3.033e^-4	0.928	INTRON Ir84a
3R	12471727	3R_12471727_SNP [dm3] 3R_16646005_SNP [dm6]	C	T	3.043e^-4	0.928	DOWNSTREAM CG10326 INTRON CG10324
3L	8174557	3L_8174557_SNP [dm3] 3L_8181457_SNP [dm6]	G	A	3.046e^-4	0.928	SYNONYMOUS_CODING CG7979 UPSTREAM mthl7
3L	10104603	3L_10104603_SNP [dm3] 3L_10111503_SNP [dm6]	A	C	3.055e^-4	0.928	INTRON dpr6
2R	13487738	2R_13487738_SNP [dm3] 2R_17600233_SNP [dm6]	T	C	3.066e^-4	0.928	SYNONYMOUS_CODING lack UPSTREAM CG43920 & 1 other	TF binding site mE1_TFBS_cad
2L	9409362	2L_9409362_SNP [dm3] 2L_9409362_SNP [dm6]	C	A	3.070e^-4	0.928	INTRON Shawl
2L	261646	2L_261646_SNP [dm3] 2L_261646_SNP [dm6]	A	G	3.107e^-4	0.928	UTR_3_PRIME CG17075 UPSTREAM CR44219 INTRON CG3645
X	15312301	X_15312301_SNP [dm3] X_15418268_SNP [dm6]	G	T	3.118e^-4	0.928	INTRON Cngl
2L	18641176	2L_18641176_SNP [dm3] 2L_18641176_SNP [dm6]	G	C	3.119e^-4	0.928	INTRON MESR3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12472952	3R_12472952_SNP [dm3] 3R_16647230_SNP [dm6]	T	C	3.119e^-4	0.928	UPSTREAM Cctgamma & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2L	10031193	2L_10031193_SNP [dm3] 2L_10031193_SNP [dm6]	C	T	3.128e^-4	0.928	INTERGENIC
3R	14380985	3R_14380985_INS [dm3] 3R_18555263_INS [dm6]	T	TTT	3.132e^-4	0.928	INTERGENIC
2R	10533933	2R_10533933_SNP [dm3] 2R_14646428_SNP [dm6]	A	C	3.138e^-4	0.928	DOWNSTREAM CG10139 INTERGENIC
3R	14342228	3R_14342228_SNP [dm3] 3R_18516506_SNP [dm6]	A	T	3.142e^-4	0.928	INTRON fru	TF binding site BDTNP1_TFBS_twi
3R	26459265	3R_26459265_SNP [dm3] 3R_30633543_SNP [dm6]	A	G	3.147e^-4	0.928	INTERGENIC
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	3.148e^-4	0.928	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10337921	2R_10337921_SNP [dm3] 2R_14450416_SNP [dm6]	A	T	3.160e^-4	0.928	INTRON Oaz	TF binding site mE1_TFBS_cad
3L	16918406	3L_16918406_SNP [dm3] 3L_16925306_SNP [dm6]	A	G	3.163e^-4	0.928	SYNONYMOUS_CODING CG13023	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5281983	3L_5281983_SNP [dm3] 3L_5288883_SNP [dm6]	A	T	3.188e^-4	0.928	INTERGENIC
3R	11441233	3R_11441233_SNP [dm3] 3R_15615511_SNP [dm6]	C	T	3.192e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	15311955	X_15311955_SNP [dm3] X_15417922_SNP [dm6]	A	C	3.195e^-4	0.928	INTRON Cngl
2R	8093258	2R_8093258_SNP [dm3] 2R_12205753_SNP [dm6]	A	T	3.200e^-4	0.928	UPSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18205510	3L_18205510_SNP [dm3] 3L_18212410_SNP [dm6]	C	T	3.205e^-4	0.928	INTERGENIC
X	13187710	X_13187710_SNP [dm3] X_13293677_SNP [dm6]	A	G	3.205e^-4	0.928	SYNONYMOUS_CODING CG15744 DOWNSTREAM CG1764
2R	14626501	2R_14626501_SNP [dm3] 2R_18738996_SNP [dm6]	A	G	3.207e^-4	0.928	UTR_3_PRIME CG33998 DOWNSTREAM CR30121 INTRON Hs3st-A
2R	15721088	2R_15721088_SNP [dm3] 2R_19833583_SNP [dm6]	C	A	3.216e^-4	0.928	DOWNSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11437964	2L_11437964_SNP [dm3] 2L_11437964_SNP [dm6]	C	T	3.218e^-4	0.928	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9885353	2R_9885353_SNP [dm3] 2R_13997848_SNP [dm6]	G	A	3.227e^-4	0.928	INTRON mam	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	8088135	2R_8088135_SNP [dm3] 2R_12200630_SNP [dm6]	A	G	3.231e^-4	0.928	UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	27168445	3R_27168445_SNP [dm3] 3R_31342723_SNP [dm6]	A	G	3.232e^-4	0.928	INTRON CG34347
2L	12030748	2L_12030748_SNP [dm3] 2L_12030748_SNP [dm6]	G	A	3.234e^-4	0.928	INTRON dmGlut	TF binding site mE1_TFBS_cad
3R	11436217	3R_11436217_SNP [dm3] 3R_15610495_SNP [dm6]	T	G	3.244e^-4	0.928	INTERGENIC
3R	2167014	3R_2167014_DEL [dm3] 3R_6341292_DEL [dm6]	ATCT	C	3.250e^-4	0.928	UTR_3_PRIME Osi20 UPSTREAM CG17917	TF binding site mE1_TFBS_cad
X	21122550	X_21122550_SNP [dm3] X_21251523_SNP [dm6]	A	G	3.260e^-4	0.928	UPSTREAM CG1722 INTRON CG32521
3L	9025104	3L_9025104_SNP [dm3] 3L_9032004_SNP [dm6]	T	G	3.261e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16132174	2L_16132174_SNP [dm3] 2L_16132174_SNP [dm6]	T	C	3.269e^-4	0.928	INTERGENIC
2R	11982058	2R_11982058_SNP [dm3] 2R_16094553_SNP [dm6]	T	A	3.274e^-4	0.928	INTRON Dg	TF binding site BDTNP1_TFBS_twi
3R	20232408	3R_20232408_SNP [dm3] 3R_24406686_SNP [dm6]	A	T	3.277e^-4	0.928	INTRON nAChRalpha1
3R	3234135	3R_3234135_SNP [dm3] 3R_7408413_SNP [dm6]	A	C	3.280e^-4	0.928	INTRON Ir84a
X	17163476	X_17163476_SNP [dm3] X_17269443_SNP [dm6]	C	A	3.284e^-4	0.928	INTRON f
3R	27136434	3R_27136434_SNP [dm3] 3R_31310712_SNP [dm6]	C	G	3.290e^-4	0.928	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	23021178	3R_23021178_SNP [dm3] 3R_27195456_SNP [dm6]	A	T	3.295e^-4	0.928	INTERGENIC	regulatory region REDfly_CRMs
2L	22975488	2L_22975488_DEL [dm3] 2L_23082756_DEL [dm6]	TATAC	T	3.303e^-4	0.928	INTERGENIC
2L	14809309	2L_14809309_SNP [dm3] 2L_14809309_SNP [dm6]	A	T	3.304e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18161311	2R_18161311_SNP [dm3] 2R_22273806_SNP [dm6]	C	A	3.308e^-4	0.928	INTRON dve	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8195459	2R_8195459_SNP [dm3] 2R_12307954_SNP [dm6]	C	T	3.312e^-4	0.928	SPLICE_SITE_REGION CG17739 INTRON CG17739	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6287063	2R_6287063_SNP [dm3] 2R_10399558_SNP [dm6]	A	T	3.319e^-4	0.928	INTRON CG42732
3R	2324575	3R_2324575_SNP [dm3] 3R_6498853_SNP [dm6]	T	A	3.322e^-4	0.928	INTERGENIC
3L	14206340	3L_14206340_SNP [dm3] 3L_14213240_SNP [dm6]	T	A	3.324e^-4	0.928	INTRON nuf	TF binding site mE1_TFBS_bab1
3R	22901461	3R_22901461_SNP [dm3] 3R_27075739_SNP [dm6]	A	G	3.324e^-4	0.928	UPSTREAM CG14257 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26438703	3R_26438703_SNP [dm3] 3R_30612981_SNP [dm6]	T	G	3.325e^-4	0.928	UPSTREAM CR45571 EXON CR45571
2L	6695664	2L_6695664_SNP [dm3] 2L_6695664_SNP [dm6]	C	T	3.327e^-4	0.928	INTRON Tsp
3R	7554878	3R_7554878_SNP [dm3] 3R_11729156_SNP [dm6]	C	T	3.331e^-4	0.928	INTRON CG12594	TF binding site mE1_TFBS_cad
X	14441396	X_14441396_SNP [dm3] X_14547363_SNP [dm6]	G	A	3.338e^-4	0.928	INTERGENIC
3R	3202979	3R_3202979_SNP [dm3] 3R_7377257_SNP [dm6]	A	C	3.361e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5727967	X_5727967_SNP [dm3] X_5833934_SNP [dm6]	C	T	3.362e^-4	0.928	INTRON CG15765
X	12054464	X_12054464_SNP [dm3] X_12160431_SNP [dm6]	A	G	3.365e^-4	0.928	INTRON Ten-a
X	11776158	X_11776158_SNP [dm3] X_11882125_SNP [dm6]	C	A	3.371e^-4	0.928	INTRON CG10353
3R	8511699	3R_8511699_SNP [dm3] 3R_12685977_SNP [dm6]	A	T	3.374e^-4	0.928	INTRON kar	TF binding site mE1_TFBS_cad
2R	8016647	2R_8016647_SNP [dm3] 2R_12129142_SNP [dm6]	T	C	3.380e^-4	0.928	INTERGENIC
2L	8229059	2L_8229059_DEL [dm3] 2L_8229059_DEL [dm6]	AAAAATG	A	3.381e^-4	0.928	INTRON Pvr
2R	16949078	2R_16949078_SNP [dm3] 2R_21061573_SNP [dm6]	G	A	3.382e^-4	0.928	UTR_3_PRIME mRpL54 UPSTREAM Cht8	TF binding site mE1_TFBS_sens
X	3707763	X_3707763_SNP [dm3] X_3813730_SNP [dm6]	T	A	3.384e^-4	0.928	INTRON ec
3L	7799455	3L_7799455_SNP [dm3] 3L_7806355_SNP [dm6]	A	T	3.389e^-4	0.928	INTRON CG32369	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	22956962	2L_22956962_DEL [dm3] 2L_23064230_DEL [dm6]	TTT	T	3.394e^-4	0.928	INTERGENIC
2L	5238684	2L_5238684_SNP [dm3] 2L_5238684_SNP [dm6]	C	T	3.397e^-4	0.928	INTRON tkv	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr mE1_TFBS_Trl
2R	16528349	2R_16528349_SNP [dm3] 2R_20640844_SNP [dm6]	G	A	3.404e^-4	0.928	UPSTREAM maf-S & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	1373350	2R_1373350_SNP [dm3] 2R_5485845_SNP [dm6]	T	C	3.407e^-4	0.928	INTRON CG30440
2L	15102065	2L_15102065_SNP [dm3] 2L_15102065_SNP [dm6]	T	A	3.412e^-4	0.928	INTERGENIC
2R	14649714	2R_14649714_SNP [dm3] 2R_18762209_SNP [dm6]	C	T	3.417e^-4	0.928	UTR_5_PRIME Mctp
3R	24672297	3R_24672297_SNP [dm3] 3R_28846575_SNP [dm6]	T	A	3.423e^-4	0.928	INTRON spg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10298532	3L_10298532_SNP [dm3] 3L_10305432_SNP [dm6]	C	A	3.430e^-4	0.928	INTERGENIC
2R	18435713	2R_18435713_SNP [dm3] 2R_22548208_SNP [dm6]	G	A	3.439e^-4	0.928	INTRON px
3L	1825298	3L_1825298_SNP [dm3] 3L_1825298_SNP [dm6]	T	C	3.448e^-4	0.928	INTRON Cpr62Ba
2L	12299164	2L_12299164_SNP [dm3] 2L_12299164_SNP [dm6]	T	C	3.448e^-4	0.928	INTRON aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9393181	3L_9393181_SNP [dm3] 3L_9400081_SNP [dm6]	G	T	3.453e^-4	0.928	UPSTREAM CG4080 INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5461884	3L_5461884_SNP [dm3] 3L_5468784_SNP [dm6]	A	C	3.496e^-4	0.928	INTERGENIC
X	3422445	X_3422445_SNP [dm3] X_3528412_SNP [dm6]	G	A	3.509e^-4	0.928	INTRON CG32791
2R	9143376	2R_9143376_SNP [dm3] 2R_13255871_SNP [dm6]	T	A	3.528e^-4	0.928	UPSTREAM CR44343 & 1 other INTERGENIC
2R	14425360	2R_14425360_SNP [dm3] 2R_18537855_SNP [dm6]	C	T	3.528e^-4	0.928	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13487755	3R_13487755_SNP [dm3] 3R_17662033_SNP [dm6]	A	G	3.534e^-4	0.928	NON_SYNONYMOUS_CODING CG14322
2R	8087757	2R_8087757_SNP [dm3] 2R_12200252_SNP [dm6]	A	G	3.538e^-4	0.928	UPSTREAM snoRNA:Me28S-C3420b & 1 other INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	11437448	2L_11437448_SNP [dm3] 2L_11437448_SNP [dm6]	C	T	3.538e^-4	0.928	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8943269	2L_8943269_SNP [dm3] 2L_8943269_SNP [dm6]	G	T	3.542e^-4	0.928	UPSTREAM CG9515 DOWNSTREAM C1GalTA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	18080944	3L_18080944_SNP [dm3] 3L_18087844_SNP [dm6]	T	G	3.549e^-4	0.928	UPSTREAM CR32194 & 1 other DOWNSTREAM CG13698 INTERGENIC	transposable element FlyBase
2R	6684624	2R_6684624_SNP [dm3] 2R_10797119_SNP [dm6]	G	A	3.563e^-4	0.928	INTRON CG33144
3L	6343724	3L_6343724_SNP [dm3] 3L_6350624_SNP [dm6]	T	C	3.564e^-4	0.928	SYNONYMOUS_CODING Sfp65A INTRON CG13300	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	12474401	3R_12474401_SNP [dm3] 3R_16648679_SNP [dm6]	T	A	3.567e^-4	0.928	INTRON Cctgamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22012828	3R_22012828_SNP [dm3] 3R_26187106_SNP [dm6]	G	A	3.571e^-4	0.928	UTR_3_PRIME CG31323 & 1 other DOWNSTREAM CG31086 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	27138165	3R_27138165_DEL [dm3] 3R_31312443_DEL [dm6]	AC	A	3.571e^-4	0.928	INTRON CG34347
3L	16856068	3L_16856068_INS [dm3] 3L_16862968_INS [dm6]	T	TGAAT	3.574e^-4	0.928	UPSTREAM CG9951 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	6069453	3L_6069453_SNP [dm3] 3L_6076353_SNP [dm6]	A	G	3.590e^-4	0.928	UPSTREAM CG6619 DOWNSTREAM CG6610 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9179724	3L_9179724_SNP [dm3] 3L_9186624_SNP [dm6]	G	A	3.594e^-4	0.928	INTERGENIC
3R	27138016	3R_27138016_SNP [dm3] 3R_31312294_SNP [dm6]	G	A	3.602e^-4	0.928	INTRON CG34347
X	15313017	X_15313017_SNP [dm3] X_15418984_SNP [dm6]	T	G	3.607e^-4	0.928	INTRON Cngl
3R	12393374	3R_12393374_SNP [dm3] 3R_16567652_SNP [dm6]	C	A	3.610e^-4	0.928	UTR_3_PRIME CG42342 INTRON CG42342
2L	20805491	2L_20805491_SNP [dm3] 2L_20805491_SNP [dm6]	C	T	3.617e^-4	0.928	INTRON CG9328	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	9876484	2R_9876484_SNP [dm3] 2R_13988979_SNP [dm6]	G	A	3.623e^-4	0.928	SYNONYMOUS_CODING RN-tre	TF binding site mE1_TFBS_sens
2R	7406943	2R_7406943_SNP [dm3] 2R_11519438_SNP [dm6]	T	C	3.626e^-4	0.928	INTERGENIC
3R	20232495	3R_20232495_SNP [dm3] 3R_24406773_SNP [dm6]	C	T	3.646e^-4	0.928	INTRON nAChRalpha1
X	18919952	X_18919952_INS [dm3] X_19025919_INS [dm6]	A	AGGA	3.669e^-4	0.928	UTR_3_PRIME CG43759
3R	3175041	3R_3175041_SNP [dm3] 3R_7349319_SNP [dm6]	A	G	3.672e^-4	0.928	INTRON CG43290
3L	3816276	3L_3816276_SNP [dm3] 3L_3816276_SNP [dm6]	A	G	3.677e^-4	0.928	UPSTREAM CR45034 INTRON Scsalpha & 1 other
3L	10376835	3L_10376835_SNP [dm3] 3L_10383735_SNP [dm6]	T	A	3.686e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11903894	2L_11903894_SNP [dm3] 2L_11903894_SNP [dm6]	T	C	3.692e^-4	0.928	INTRON Pde1c
2L	4570446	2L_4570446_SNP [dm3] 2L_4570446_SNP [dm6]	G	C	3.692e^-4	0.928	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13964190	3R_13964190_SNP [dm3] 3R_18138468_SNP [dm6]	C	T	3.699e^-4	0.928	INTERGENIC
3L	5877899	3L_5877899_SNP [dm3] 3L_5884799_SNP [dm6]	C	T	3.703e^-4	0.928	DOWNSTREAM CG13287 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9867295	2R_9867295_SNP [dm3] 2R_13979790_SNP [dm6]	G	T	3.716e^-4	0.928	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15680732	3R_15680732_SNP [dm3] 3R_19855010_SNP [dm6]	G	A	3.722e^-4	0.928	SYNONYMOUS_CODING Ire1 DOWNSTREAM CG4662	TF binding site mE1_TFBS_cad
3R	3222577	3R_3222577_SNP [dm3] 3R_7396855_SNP [dm6]	C	A	3.732e^-4	0.928	INTERGENIC
3L	11037557	3L_11037557_SNP [dm3] 3L_11044457_SNP [dm6]	C	G	3.735e^-4	0.928	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2L	13006148	2L_13006148_SNP [dm3] 2L_13006148_SNP [dm6]	A	G	3.736e^-4	0.928	INTRON Tor
2L	15401192	2L_15401192_SNP [dm3] 2L_15401192_SNP [dm6]	A	G	3.739e^-4	0.928	UPSTREAM CR45374 INTERGENIC
2L	7212862	2L_7212862_SNP [dm3] 2L_7212862_SNP [dm6]	A	G	3.740e^-4	0.928	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15327017	X_15327017_SNP [dm3] X_15432984_SNP [dm6]	A	T	3.741e^-4	0.928	INTRON Cngl
3R	3284700	3R_3284700_SNP [dm3] 3R_7458978_SNP [dm6]	G	A	3.747e^-4	0.928	INTERGENIC
2L	8654605	2L_8654605_SNP [dm3] 2L_8654605_SNP [dm6]	A	C	3.757e^-4	0.928	INTRON Sema-1a
3L	694705	3L_694705_SNP [dm3] 3L_694705_SNP [dm6]	T	C	3.758e^-4	0.928	SYNONYMOUS_CODING CG13894	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	7065241	2L_7065241_SNP [dm3] 2L_7065241_SNP [dm6]	G	A	3.759e^-4	0.928	SYNONYMOUS_CODING Nuf2 DOWNSTREAM Sem1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	18897173	2R_18897173_SNP [dm3] 2R_23009650_SNP [dm6]	C	T	3.760e^-4	0.928	INTRON twi	TF binding site mE1_TFBS_chinmo
X	8837133	X_8837133_SNP [dm3] X_8943100_SNP [dm6]	T	G	3.761e^-4	0.928	INTRON rdgA
2L	16232387	2L_16232387_SNP [dm3] 2L_16232387_SNP [dm6]	T	G	3.764e^-4	0.928	INTRON CG42817	TF binding site BDTNP1_TFBS_slp1
3L	6069403	3L_6069403_SNP [dm3] 3L_6076303_SNP [dm6]	A	C	3.767e^-4	0.928	UPSTREAM CG6619 DOWNSTREAM CG6610 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14123707	2L_14123707_SNP [dm3] 2L_14123707_SNP [dm6]	A	T	3.774e^-4	0.928	INTERGENIC
2L	17933608	2L_17933608_SNP [dm3] 2L_17933608_SNP [dm6]	G	T	3.777e^-4	0.928	INTERGENIC
3L	18354151	3L_18354151_SNP [dm3] 3L_18361051_SNP [dm6]	T	C	3.777e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	3253593	3R_3253593_SNP [dm3] 3R_7427871_SNP [dm6]	G	A	3.780e^-4	0.928	INTERGENIC
2L	22923995	2L_22923995_SNP [dm3] 2L_23031263_SNP [dm6]	G	A	3.783e^-4	0.928	INTERGENIC
2R	10337941	2R_10337941_SNP [dm3] 2R_14450436_SNP [dm6]	G	C	3.786e^-4	0.928	INTRON Oaz	TF binding site mE1_TFBS_cad
2R	5662425	2R_5662425_SNP [dm3] 2R_9774920_SNP [dm6]	A	T	3.788e^-4	0.928	UPSTREAM CR44207 INTRON CG1688
2R	5664071	2R_5664071_SNP [dm3] 2R_9776566_SNP [dm6]	C	T	3.789e^-4	0.928	DOWNSTREAM CR44207 INTRON CG1688
3R	14342282	3R_14342282_SNP [dm3] 3R_18516560_SNP [dm6]	A	G	3.800e^-4	0.928	INTRON fru	TF binding site BDTNP1_TFBS_twi
3R	12471466	3R_12471466_SNP [dm3] 3R_16645744_SNP [dm6]	T	C	3.805e^-4	0.928	SYNONYMOUS_CODING CG10324 DOWNSTREAM CG10326
3L	5377555	3L_5377555_SNP [dm3] 3L_5384455_SNP [dm6]	A	G	3.807e^-4	0.928	INTERGENIC
2R	8422603	2R_8422603_SNP [dm3] 2R_12535098_SNP [dm6]	G	A	3.811e^-4	0.928	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23445213	3R_23445213_SNP [dm3] 3R_27619491_SNP [dm6]	C	T	3.812e^-4	0.928	INTRON Tusp
2L	22949233	2L_22949233_SNP [dm3] 2L_23056501_SNP [dm6]	C	A	3.816e^-4	0.928	INTERGENIC
3L	10469365	3L_10469365_SNP [dm3] 3L_10476265_SNP [dm6]	A	C	3.819e^-4	0.928	INTERGENIC
2L	17600912	2L_17600912_SNP [dm3] 2L_17600912_SNP [dm6]	T	C	3.820e^-4	0.928	INTRON Sytalpha
2R	7624711	2R_7624711_SNP [dm3] 2R_11737206_SNP [dm6]	T	G	3.820e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
3R	20405226	3R_20405226_SNP [dm3] 3R_24579504_SNP [dm6]	T	C	3.824e^-4	0.928	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6343727	3L_6343727_SNP [dm3] 3L_6350627_SNP [dm6]	A	C	3.825e^-4	0.928	SYNONYMOUS_CODING Sfp65A INTRON CG13300	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7218080	3L_7218080_SNP [dm3] 3L_7224980_SNP [dm6]	C	A	3.832e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	7956799	3L_7956799_SNP [dm3] 3L_7963699_SNP [dm6]	C	T	3.842e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6343741	3L_6343741_SNP [dm3] 3L_6350641_SNP [dm6]	T	A	3.842e^-4	0.928	NON_SYNONYMOUS_CODING Sfp65A INTRON CG13300	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	7406959	2R_7406959_SNP [dm3] 2R_11519454_SNP [dm6]	G	A	3.847e^-4	0.928	INTERGENIC
3L	15859965	3L_15859965_SNP [dm3] 3L_15866865_SNP [dm6]	G	T	3.862e^-4	0.928	INTRON pHCl
2R	9170635	2R_9170635_SNP [dm3] 2R_13283130_SNP [dm6]	C	T	3.863e^-4	0.928	INTRON Dh31-R
2L	4679035	2L_4679035_SNP [dm3] 2L_4679035_SNP [dm6]	T	C	3.864e^-4	0.928	INTERGENIC
2R	8113441	2R_8113441_SNP [dm3] 2R_12225936_SNP [dm6]	C	T	3.868e^-4	0.928	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	12054442	X_12054442_SNP [dm3] X_12160409_SNP [dm6]	A	G	3.873e^-4	0.928	INTRON Ten-a
3R	22901252	3R_22901252_SNP [dm3] 3R_27075530_SNP [dm6]	A	G	3.883e^-4	0.928	UPSTREAM CG14257 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	22939052	3R_22939052_SNP [dm3] 3R_27113330_SNP [dm6]	G	A	3.896e^-4	0.928	NON_SYNONYMOUS_CODING CG5815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	4468018	3R_4468018_SNP [dm3] 3R_8642296_SNP [dm6]	C	A	3.899e^-4	0.928	DOWNSTREAM tRNA:Y1:85Ae & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18270739	3L_18270739_INS [dm3] 3L_18277639_INS [dm6]	T	TAT	3.906e^-4	0.928	INTERGENIC
3R	3246970	3R_3246970_SNP [dm3] 3R_7421248_SNP [dm6]	C	T	3.921e^-4	0.928	SYNONYMOUS_CODING wa-cup DOWNSTREAM CG34023
3R	22935515	3R_22935515_SNP [dm3] 3R_27109793_SNP [dm6]	G	T	3.932e^-4	0.928	SYNONYMOUS_CODING gb EXON CR45209
2R	6308266	2R_6308266_SNP [dm3] 2R_10420761_SNP [dm6]	G	T	3.935e^-4	0.928	SYNONYMOUS_CODING CG11825 UPSTREAM CG33474 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	13006373	2L_13006373_SNP [dm3] 2L_13006373_SNP [dm6]	A	C	3.947e^-4	0.928	SYNONYMOUS_CODING Tor
X	19377707	X_19377707_INS [dm3] X_19483674_INS [dm6]	T	TT	3.949e^-4	0.928	INTRON Nat1
2L	17124967	2L_17124967_SNP [dm3] 2L_17124967_SNP [dm6]	C	T	3.963e^-4	0.928	SYNONYMOUS_CODING CG31784
3R	3295296	3R_3295296_DEL [dm3] 3R_7469574_DEL [dm6]	AAA	A	3.970e^-4	0.928	UPSTREAM CR44934 INTERGENIC
3L	18081695	3L_18081695_SNP [dm3] 3L_18088595_SNP [dm6]	T	C	3.971e^-4	0.928	UTR_3_PRIME CG13698 DOWNSTREAM CG13698
2L	536744	2L_536744_SNP [dm3] 2L_536744_SNP [dm6]	A	G	3.983e^-4	0.928	SYNONYMOUS_CODING ush	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6307206	2R_6307206_SNP [dm3] 2R_10419701_SNP [dm6]	T	A	3.986e^-4	0.928	UTR_3_PRIME Prx2540-2 DOWNSTREAM CG11825	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	14441417	X_14441417_SNP [dm3] X_14547384_SNP [dm6]	A	C	3.989e^-4	0.928	INTERGENIC
3R	17525861	3R_17525861_SNP [dm3] 3R_21700139_SNP [dm6]	A	C	4.000e^-4	0.928	INTRON CG31176
3R	3197234	3R_3197234_SNP [dm3] 3R_7371512_SNP [dm6]	C	A	4.001e^-4	0.928	INTERGENIC
2L	9671012	2L_9671012_SNP [dm3] 2L_9671012_SNP [dm6]	G	A	4.003e^-4	0.928	EXON CR44150
3R	22200529	3R_22200529_SNP [dm3] 3R_26374807_SNP [dm6]	G	A	4.010e^-4	0.928	INTERGENIC
3R	25784264	3R_25784264_SNP [dm3] 3R_29958542_SNP [dm6]	A	C	4.014e^-4	0.928	INTRON TkR99D
3L	18848155	3L_18848155_SNP [dm3] 3L_18855055_SNP [dm6]	A	T	4.028e^-4	0.928	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5641279	2R_5641279_SNP [dm3] 2R_9753774_SNP [dm6]	T	G	4.038e^-4	0.928	UTR_5_PRIME trpl
3R	27143639	3R_27143639_SNP [dm3] 3R_31317917_SNP [dm6]	G	C	4.043e^-4	0.928	INTRON CG34347
X	17533382	X_17533382_SNP [dm3] X_17639349_SNP [dm6]	G	A	4.047e^-4	0.928	UTR_3_PRIME RhoGAPp190 DOWNSTREAM CG5800
2R	8090744	2R_8090744_SNP [dm3] 2R_12203239_SNP [dm6]	A	G	4.062e^-4	0.928	INTERGENIC
2L	12030957	2L_12030957_SNP [dm3] 2L_12030957_SNP [dm6]	A	T	4.073e^-4	0.928	INTRON dmGlut	TF binding site mE1_TFBS_cad
2L	10864904	2L_10864904_SNP [dm3] 2L_10864904_SNP [dm6]	T	A	4.077e^-4	0.928	UPSTREAM CR43807 INTERGENIC
3R	3262052	3R_3262052_SNP [dm3] 3R_7436330_SNP [dm6]	G	T	4.077e^-4	0.928	INTERGENIC
X	22030525	X_22030525_SNP [dm3] X_22628689_SNP [dm6]	G	T	4.077e^-4	0.928	INTRON Cda4
2L	1024220	2L_1024220_SNP [dm3] 2L_1024220_SNP [dm6]	C	T	4.083e^-4	0.928	INTRON IA-2
2L	1024228	2L_1024228_SNP [dm3] 2L_1024228_SNP [dm6]	T	C	4.083e^-4	0.928	INTRON IA-2
3R	7554812	3R_7554812_SNP [dm3] 3R_11729090_SNP [dm6]	A	T	4.092e^-4	0.928	INTRON CG12594
3L	10104605	3L_10104605_SNP [dm3] 3L_10111505_SNP [dm6]	T	C	4.103e^-4	0.928	INTRON dpr6
2L	10496731	2L_10496731_SNP [dm3] 2L_10496731_SNP [dm6]	G	A	4.111e^-4	0.928	SYNONYMOUS_CODING Myo31DF
2R	19353608	2R_19353608_SNP [dm3] 2R_23466085_SNP [dm6]	G	T	4.117e^-4	0.928	INTRON CG43795
3L	10736565	3L_10736565_SNP [dm3] 3L_10743465_SNP [dm6]	G	A	4.118e^-4	0.928	INTERGENIC
2L	6233540	2L_6233540_SNP [dm3] 2L_6233540_SNP [dm6]	T	C	4.134e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15313021	X_15313021_SNP [dm3] X_15418988_SNP [dm6]	A	T	4.135e^-4	0.928	INTRON Cngl
2R	8092269	2R_8092269_SNP [dm3] 2R_12204764_SNP [dm6]	T	A	4.149e^-4	0.928	INTERGENIC
2R	20262834	2R_20262834_DEL [dm3] 2R_24375311_DEL [dm6]	CGATCCCCACTCCCAGCC...	C	4.155e^-4	0.928	INTRON bs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22356588	3L_22356588_SNP [dm3] 3L_22363488_SNP [dm6]	A	G	4.164e^-4	0.928	INTRON Ten-m	TF binding site mE1_TFBS_sens
3L	16868903	3L_16868903_SNP [dm3] 3L_16875803_SNP [dm6]	G	A	4.166e^-4	0.928	INTRON Lmpt	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	3186318	3R_3186318_SNP [dm3] 3R_7360596_SNP [dm6]	G	T	4.172e^-4	0.928	DOWNSTREAM CG17944 INTERGENIC
2R	7329931	2R_7329931_SNP [dm3] 2R_11442426_SNP [dm6]	G	C	4.175e^-4	0.928	UPSTREAM qvr DOWNSTREAM CG7777 INTERGENIC
3R	27136483	3R_27136483_SNP [dm3] 3R_31310761_SNP [dm6]	T	C	4.180e^-4	0.928	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	4277456	2L_4277456_SNP [dm3] 2L_4277456_SNP [dm6]	A	T	4.182e^-4	0.928	DOWNSTREAM Art2 INTERGENIC
3R	18353434	3R_18353434_SNP [dm3] 3R_22527712_SNP [dm6]	G	A	4.197e^-4	0.928	INTRON CG5346	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	15680726	3R_15680726_SNP [dm3] 3R_19855004_SNP [dm6]	T	C	4.205e^-4	0.928	SYNONYMOUS_CODING Ire1 DOWNSTREAM CG4662	TF binding site mE1_TFBS_cad
2L	3125394	2L_3125394_SNP [dm3] 2L_3125394_SNP [dm6]	A	T	4.209e^-4	0.928	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13682711	2L_13682711_DEL [dm3] 2L_13682711_DEL [dm6]	AGCG	A	4.220e^-4	0.928	INTRON CG31814
2R	8092424	2R_8092424_SNP [dm3] 2R_12204919_SNP [dm6]	A	T	4.231e^-4	0.928	INTERGENIC
X	19522484	X_19522484_SNP [dm3] X_19628451_SNP [dm6]	T	C	4.236e^-4	0.928	NON_SYNONYMOUS_CODING e_y_3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	8090760	2R_8090760_SNP [dm3] 2R_12203255_SNP [dm6]	C	T	4.238e^-4	0.928	INTERGENIC
2L	8902097	2L_8902097_SNP [dm3] 2L_8902097_SNP [dm6]	A	G	4.241e^-4	0.928	INTRON CG34398
X	15327894	X_15327894_SNP [dm3] X_15433861_SNP [dm6]	A	C	4.246e^-4	0.928	INTRON Cngl
X	8153457	X_8153457_SNP [dm3] X_8259424_SNP [dm6]	C	G	4.249e^-4	0.928	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15402020	2L_15402020_SNP [dm3] 2L_15402020_SNP [dm6]	A	G	4.251e^-4	0.928	INTERGENIC
3L	5874709	3L_5874709_SNP [dm3] 3L_5881609_SNP [dm6]	G	A	4.252e^-4	0.928	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	4418235	X_4418235_DEL [dm3] X_4524202_DEL [dm6]	TCTTTTTTCGT...	T	4.257e^-4	0.928	INTRON CR32773
2R	10337952	2R_10337952_SNP [dm3] 2R_14450447_SNP [dm6]	G	A	4.262e^-4	0.928	INTRON Oaz	TF binding site mE1_TFBS_cad
3R	3168072	3R_3168072_INS [dm3] 3R_7342350_INS [dm6]	A	ATAT	4.286e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	27138527	3R_27138527_SNP [dm3] 3R_31312805_SNP [dm6]	C	G	4.287e^-4	0.928	INTRON CG34347
2R	20152972	2R_20152972_SNP [dm3] 2R_24265449_SNP [dm6]	G	C	4.295e^-4	0.928	DOWNSTREAM CG3376 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17311902	X_17311902_SNP [dm3] X_17417869_SNP [dm6]	T	A	4.297e^-4	0.928	INTRON CG8611	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4967857	X_4967857_DEL [dm3] X_5073824_DEL [dm6]	TT	T	4.299e^-4	0.928	UTR_3_PRIME CG32767
3L	16861158	3L_16861158_SNP [dm3] 3L_16868058_SNP [dm6]	T	A	4.300e^-4	0.928	INTRON Lmpt
3L	5874879	3L_5874879_SNP [dm3] 3L_5881779_SNP [dm6]	C	T	4.311e^-4	0.928	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	13559983	2L_13559983_SNP [dm3] 2L_13559983_SNP [dm6]	C	A	4.315e^-4	0.928	INTRON kuz
3L	6987837	3L_6987837_INS [dm3] 3L_6994737_INS [dm6]	T	TT	4.316e^-4	0.928	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8077706	2R_8077706_SNP [dm3] 2R_12190201_SNP [dm6]	G	T	4.323e^-4	0.928	SYNONYMOUS_CODING Cyp6g2 UPSTREAM Cyp6t3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15567237	2R_15567237_SNP [dm3] 2R_19679732_SNP [dm6]	A	G	4.342e^-4	0.928	INTERGENIC
2R	19308245	2R_19308245_SNP [dm3] 2R_23420722_SNP [dm6]	G	T	4.343e^-4	0.928	DOWNSTREAM CG9815 INTERGENIC
2R	8090739	2R_8090739_SNP [dm3] 2R_12203234_SNP [dm6]	G	A	4.350e^-4	0.928	INTERGENIC
2L	3555846	2L_3555846_SNP [dm3] 2L_3555846_SNP [dm6]	G	C	4.353e^-4	0.928	INTERGENIC
3L	11043536	3L_11043536_SNP [dm3] 3L_11050436_SNP [dm6]	A	C	4.362e^-4	0.928	UTR_5_PRIME CG43693 INTRON CG43693 EXON CR45119
3L	13187631	3L_13187631_SNP [dm3] 3L_13194531_SNP [dm6]	G	T	4.367e^-4	0.928	INTERGENIC
2R	2524463	2R_2524463_SNP [dm3] 2R_6636958_SNP [dm6]	G	T	4.372e^-4	0.928	UPSTREAM Trap1 INTRON Bap170	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14476535	2L_14476535_SNP [dm3] 2L_14476535_SNP [dm6]	G	A	4.378e^-4	0.928	INTERGENIC
2L	13006288	2L_13006288_SNP [dm3] 2L_13006288_SNP [dm6]	T	A	4.383e^-4	0.928	INTRON Tor
3R	3237888	3R_3237888_SNP [dm3] 3R_7412166_SNP [dm6]	T	A	4.388e^-4	0.928	INTERGENIC
2R	17762583	2R_17762583_SNP [dm3] 2R_21875078_SNP [dm6]	T	G	4.388e^-4	0.928	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2559053	3L_2559053_SNP [dm3] 3L_2559053_SNP [dm6]	G	A	4.404e^-4	0.928	INTRON msn
3R	14779716	3R_14779716_SNP [dm3] 3R_18953994_SNP [dm6]	G	T	4.404e^-4	0.928	INTRON CG42613 & 1 other
3R	25404980	3R_25404980_SNP [dm3] 3R_29579258_SNP [dm6]	A	G	4.407e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	22958679	2L_22958679_SNP [dm3] 2L_23065947_SNP [dm6]	G	A	4.408e^-4	0.928	DOWNSTREAM Spf45 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	5231896	2R_5231896_SNP [dm3] 2R_9344391_SNP [dm6]	T	C	4.415e^-4	0.928	UPSTREAM Or45a INTRON CG13954 & 1 other
3R	3261065	3R_3261065_SNP [dm3] 3R_7435343_SNP [dm6]	A	T	4.426e^-4	0.928	INTERGENIC
X	1623931	X_1623931_SNP [dm3] X_1729898_SNP [dm6]	A	G	4.427e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	22433395	3L_22433395_SNP [dm3] 3L_22440295_SNP [dm6]	A	C	4.429e^-4	0.928	INTERGENIC
2R	16934491	2R_16934491_SNP [dm3] 2R_21046986_SNP [dm6]	A	T	4.435e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	921614	X_921614_DEL [dm3] X_1027581_DEL [dm6]	CTC	C	4.436e^-4	0.928	UPSTREAM CG32814 & 1 other DOWNSTREAM CDC45L INTRON su_w[a]_ & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8630274	3R_8630274_SNP [dm3] 3R_12804552_SNP [dm6]	T	A	4.437e^-4	0.928	INTERGENIC
3R	3225185	3R_3225185_SNP [dm3] 3R_7399463_SNP [dm6]	A	G	4.439e^-4	0.928	INTERGENIC
2L	6410493	2L_6410493_SNP [dm3] 2L_6410493_SNP [dm6]	T	A	4.441e^-4	0.928	INTRON CG42368
2R	6284223	2R_6284223_SNP [dm3] 2R_10396718_SNP [dm6]	T	C	4.442e^-4	0.928	INTRON CG42732
2L	14123904	2L_14123904_SNP [dm3] 2L_14123904_SNP [dm6]	A	G	4.443e^-4	0.928	INTERGENIC
3R	8076537	3R_8076537_SNP [dm3] 3R_12250815_SNP [dm6]	G	C	4.468e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	15325098	X_15325098_DEL [dm3] X_15431065_DEL [dm6]	CAC	C	4.482e^-4	0.928	INTRON Cngl
2R	5489169	2R_5489169_SNP [dm3] 2R_9601664_SNP [dm6]	T	C	4.490e^-4	0.928	NON_SYNONYMOUS_CODING CG30339 UPSTREAM CG30340 INTRON CG1902
3L	18278761	3L_18278761_SNP [dm3] 3L_18285661_SNP [dm6]	C	T	4.499e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	5673026	2R_5673026_SNP [dm3] 2R_9785521_SNP [dm6]	C	T	4.500e^-4	0.928	INTRON CG1688
3L	15056527	3L_15056527_INS [dm3] 3L_15063427_INS [dm6]	T	TCCTTGCT	4.502e^-4	0.928	UPSTREAM CR43684 INTRON Sytbeta
2R	16973972	2R_16973972_SNP [dm3] 2R_21086467_SNP [dm6]	A	G	4.503e^-4	0.928	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6343748	3L_6343748_SNP [dm3] 3L_6350648_SNP [dm6]	A	G	4.512e^-4	0.928	SYNONYMOUS_CODING Sfp65A INTRON CG13300	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5281986	3L_5281986_SNP [dm3] 3L_5288886_SNP [dm6]	T	C	4.528e^-4	0.928	INTERGENIC
3L	4731944	3L_4731944_SNP [dm3] 3L_4731944_SNP [dm6]	A	C	4.532e^-4	0.928	INTRON RhoGEF64C
2L	11773290	2L_11773290_SNP [dm3] 2L_11773290_SNP [dm6]	G	A	4.537e^-4	0.928	INTERGENIC
2L	21006971	2L_21006971_SNP [dm3] 2L_21006971_SNP [dm6]	A	G	4.537e^-4	0.928	INTRON CG42238
3L	3747592	3L_3747592_SNP [dm3] 3L_3747592_SNP [dm6]	G	T	4.541e^-4	0.928	INTRON CG32264
2R	12573668	2R_12573668_INS [dm3] 2R_16686163_INS [dm6]	C	CAGGCAGGC	4.543e^-4	0.928	INTRON CG30463
3R	20585933	3R_20585933_SNP [dm3] 3R_24760211_SNP [dm6]	G	A	4.549e^-4	0.928	SYNONYMOUS_CODING asp DOWNSTREAM AstA	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	7133616	2R_7133616_SNP [dm3] 2R_11246111_SNP [dm6]	G	T	4.557e^-4	0.928	DOWNSTREAM CG13226 & 1 other EXON CR30029
2R	9844728	2R_9844728_SNP [dm3] 2R_13957223_SNP [dm6]	C	T	4.559e^-4	0.928	UTR_5_PRIME AGO1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20263325	2R_20263325_SNP [dm3] 2R_24375802_SNP [dm6]	T	C	4.560e^-4	0.928	INTRON bs	TF binding site mE1_TFBS_chinmo
3L	18848150	3L_18848150_SNP [dm3] 3L_18855050_SNP [dm6]	A	G	4.575e^-4	0.928	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8076534	3R_8076534_SNP [dm3] 3R_12250812_SNP [dm6]	T	C	4.577e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19664210	2R_19664210_SNP [dm3] 2R_23776687_SNP [dm6]	A	G	4.593e^-4	0.928	INTRON CG9850
3R	22237128	3R_22237128_SNP [dm3] 3R_26411406_SNP [dm6]	C	A	4.608e^-4	0.928	INTERGENIC
2R	5646798	2R_5646798_SNP [dm3] 2R_9759293_SNP [dm6]	C	A	4.610e^-4	0.928	INTRON trpl
2L	10034884	2L_10034884_SNP [dm3] 2L_10034884_SNP [dm6]	G	T	4.618e^-4	0.928	INTRON obst-B
3L	13598053	3L_13598053_SNP [dm3] 3L_13604953_SNP [dm6]	A	G	4.619e^-4	0.928	INTRON bru-3
3L	2551998	3L_2551998_SNP [dm3] 3L_2551998_SNP [dm6]	T	C	4.619e^-4	0.928	INTRON Spn
3R	23844008	3R_23844008_SNP [dm3] 3R_28018286_SNP [dm6]	G	A	4.630e^-4	0.928	INTERGENIC
3R	9658462	3R_9658462_SNP [dm3] 3R_13832740_SNP [dm6]	A	G	4.632e^-4	0.928	DOWNSTREAM Nsf2 INTERGENIC
3R	10902657	3R_10902657_SNP [dm3] 3R_15076935_SNP [dm6]	G	T	4.634e^-4	0.928	INTRON dpr9
3L	9883879	3L_9883879_SNP [dm3] 3L_9890779_SNP [dm6]	A	C	4.634e^-4	0.928	INTRON CalpB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9889018	2R_9889018_SNP [dm3] 2R_14001513_SNP [dm6]	A	G	4.637e^-4	0.928	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14442457	2L_14442457_SNP [dm3] 2L_14442457_SNP [dm6]	G	C	4.649e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18740617	3R_18740617_SNP [dm3] 3R_22914895_SNP [dm6]	G	C	4.652e^-4	0.928	INTRON klg
2R	19387091	2R_19387091_SNP [dm3] 2R_23499568_SNP [dm6]	A	G	4.654e^-4	0.928	UPSTREAM CG13558 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	8092915	2R_8092915_SNP [dm3] 2R_12205410_SNP [dm6]	C	G	4.659e^-4	0.928	UPSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14476480	2L_14476480_INS [dm3] 2L_14476480_INS [dm6]	T	TAGACTTTTTCAT...	4.661e^-4	0.928	INTERGENIC
3R	3170682	3R_3170682_SNP [dm3] 3R_7344960_SNP [dm6]	A	G	4.666e^-4	0.928	UPSTREAM CG31496 INTERGENIC
3L	9049459	3L_9049459_SNP [dm3] 3L_9056359_SNP [dm6]	G	A	4.672e^-4	0.928	INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	18418680	3L_18418680_SNP [dm3] 3L_18425580_SNP [dm6]	A	G	4.672e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22012796	3R_22012796_SNP [dm3] 3R_26187074_SNP [dm6]	T	C	4.681e^-4	0.928	UTR_3_PRIME CG31323 & 1 other DOWNSTREAM CG31086 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	230744	3L_230744_SNP [dm3] 3L_230744_SNP [dm6]	C	T	4.683e^-4	0.928	DOWNSTREAM CG42846 & 1 other EXON CR42862	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20805503	2L_20805503_SNP [dm3] 2L_20805503_SNP [dm6]	C	T	4.699e^-4	0.928	INTRON CG9328	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	11172284	3R_11172284_SNP [dm3] 3R_15346562_SNP [dm6]	G	A	4.700e^-4	0.928	SYNONYMOUS_CODING CG31301 UPSTREAM Surf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10111576	3L_10111576_SNP [dm3] 3L_10118476_SNP [dm6]	C	T	4.724e^-4	0.928	INTRON dpr6
3R	3189623	3R_3189623_SNP [dm3] 3R_7363901_SNP [dm6]	G	A	4.727e^-4	0.928	UPSTREAM Mst84Dd DOWNSTREAM Mst84Dc INTERGENIC
2R	15329509	2R_15329509_INS [dm3] 2R_19442004_INS [dm6]	C	CC	4.729e^-4	0.928	UPSTREAM RpL11 DOWNSTREAM Spt5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	5895504	3R_5895504_SNP [dm3] 3R_10069782_SNP [dm6]	T	A	4.730e^-4	0.928	INTERGENIC
3L	18278812	3L_18278812_SNP [dm3] 3L_18285712_SNP [dm6]	C	T	4.731e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	18278817	3L_18278817_SNP [dm3] 3L_18285717_SNP [dm6]	T	A	4.731e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_Kr
X	22370049	X_22370049_SNP [dm3] X_22968213_SNP [dm6]	T	G	4.735e^-4	0.928	INTERGENIC
2R	6134396	2R_6134396_SNP [dm3] 2R_10246891_SNP [dm6]	C	T	4.737e^-4	0.928	UPSTREAM CG12914 DOWNSTREAM Hdc INTRON CG12209	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16353683	3R_16353683_SNP [dm3] 3R_20527961_SNP [dm6]	G	T	4.750e^-4	0.928	INTERGENIC
3L	14114139	3L_14114139_SNP [dm3] 3L_14121039_SNP [dm6]	T	G	4.754e^-4	0.928	INTRON Sox21b
3R	3159308	3R_3159308_SNP [dm3] 3R_7333586_SNP [dm6]	C	T	4.756e^-4	0.928	INTERGENIC
X	19522503	X_19522503_SNP [dm3] X_19628470_SNP [dm6]	A	G	4.764e^-4	0.928	SYNONYMOUS_CODING e_y_3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	12939424	3L_12939424_SNP [dm3] 3L_12946324_SNP [dm6]	T	C	4.770e^-4	0.928	INTERGENIC
3R	13591608	3R_13591608_SNP [dm3] 3R_17765886_SNP [dm6]	A	G	4.778e^-4	0.928	INTERGENIC
X	16985537	X_16985537_SNP [dm3] X_17091504_SNP [dm6]	C	A	4.780e^-4	0.928	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18406806	2R_18406806_DEL [dm3] 2R_22519301_DEL [dm6]	TGGCTACAT	T	4.781e^-4	0.928	INTRON px
2R	8086863	2R_8086863_INS [dm3] 2R_12199358_INS [dm6]	A	AGA	4.784e^-4	0.928	UTR_3_PRIME RpS11 UPSTREAM CG8858 & 1 other DOWNSTREAM RpS11 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7852348	2L_7852348_SNP [dm3] 2L_7852348_SNP [dm6]	C	T	4.785e^-4	0.928	INTRON CG14535
2R	16665626	2R_16665626_DEL [dm3] 2R_20778121_DEL [dm6]	TGAAATATATGCTATT...	T	4.791e^-4	0.928	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
3R	20265507	3R_20265507_SNP [dm3] 3R_24439785_SNP [dm6]	G	C	4.792e^-4	0.928	UPSTREAM CR43455 INTRON nAChRalpha1
2L	16089733	2L_16089733_SNP [dm3] 2L_16089733_SNP [dm6]	C	T	4.793e^-4	0.928	INTERGENIC
3R	26455549	3R_26455549_SNP [dm3] 3R_30629827_SNP [dm6]	G	T	4.804e^-4	0.928	UPSTREAM CG2267 INTERGENIC
3L	13242217	3L_13242217_SNP [dm3] 3L_13249117_SNP [dm6]	T	C	4.805e^-4	0.928	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
2R	5666796	2R_5666796_SNP [dm3] 2R_9779291_SNP [dm6]	G	A	4.807e^-4	0.928	INTRON CG1688	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7413339	3L_7413339_SNP [dm3] 3L_7420239_SNP [dm6]	A	C	4.822e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14998640	2L_14998640_SNP [dm3] 2L_14998640_SNP [dm6]	G	A	4.827e^-4	0.928	INTERGENIC
3L	18278720	3L_18278720_SNP [dm3] 3L_18285620_SNP [dm6]	A	G	4.828e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	14653475	3L_14653475_SNP [dm3] 3L_14660375_SNP [dm6]	T	C	4.842e^-4	0.928	INTRON dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24259066	3R_24259066_SNP [dm3] 3R_28433344_SNP [dm6]	T	A	4.846e^-4	0.928	INTRON beat-VI
3R	14138534	3R_14138534_SNP [dm3] 3R_18312812_SNP [dm6]	C	G	4.868e^-4	0.928	INTRON PKD
3R	3221486	3R_3221486_SNP [dm3] 3R_7395764_SNP [dm6]	A	G	4.869e^-4	0.928	INTERGENIC
2L	15402463	2L_15402463_SNP [dm3] 2L_15402463_SNP [dm6]	G	A	4.887e^-4	0.928	INTERGENIC
X	16767358	X_16767358_SNP [dm3] X_16873325_SNP [dm6]	G	C	4.896e^-4	0.928	INTRON CG13003
2R	7133653	2R_7133653_SNP [dm3] 2R_11246148_SNP [dm6]	C	A	4.896e^-4	0.928	DOWNSTREAM CG13226 & 1 other EXON CR30029
3L	9228609	3L_9228609_SNP [dm3] 3L_9235509_SNP [dm6]	C	G	4.898e^-4	0.928	NON_SYNONYMOUS_CODING CG4483
3L	12414263	3L_12414263_SNP [dm3] 3L_12421163_SNP [dm6]	T	C	4.900e^-4	0.928	INTERGENIC
3R	22901312	3R_22901312_SNP [dm3] 3R_27075590_SNP [dm6]	C	T	4.908e^-4	0.928	UPSTREAM CG14257 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	8352395	2R_8352395_SNP [dm3] 2R_12464890_SNP [dm6]	G	C	4.917e^-4	0.928	UTR_3_PRIME Lac DOWNSTREAM dgt5
3R	3220977	3R_3220977_SNP [dm3] 3R_7395255_SNP [dm6]	A	G	4.923e^-4	0.928	INTERGENIC
3R	17066026	3R_17066026_SNP [dm3] 3R_21240304_SNP [dm6]	C	A	4.929e^-4	0.928	INTERGENIC	regulatory region REDfly_CRMs
2R	8090624	2R_8090624_SNP [dm3] 2R_12203119_SNP [dm6]	G	A	4.933e^-4	0.928	INTERGENIC
X	18982564	X_18982564_SNP [dm3] X_19088531_SNP [dm6]	C	T	4.942e^-4	0.928	INTERGENIC
2R	16765149	2R_16765149_SNP [dm3] 2R_20877644_SNP [dm6]	G	A	4.957e^-4	0.928	NON_SYNONYMOUS_CODING Ipk1
2R	8092786	2R_8092786_SNP [dm3] 2R_12205281_SNP [dm6]	C	T	4.971e^-4	0.928	UPSTREAM CR45276 INTERGENIC
3L	2332873	3L_2332873_SNP [dm3] 3L_2332873_SNP [dm6]	G	A	4.996e^-4	0.928	INTRON MsR1
2L	17124973	2L_17124973_SNP [dm3] 2L_17124973_SNP [dm6]	C	T	5.005e^-4	0.928	SYNONYMOUS_CODING CG31784
3R	15973823	3R_15973823_DEL [dm3] 3R_20148101_DEL [dm6]	CT	A	5.005e^-4	0.928	INTERGENIC
3R	12477842	3R_12477842_SNP [dm3] 3R_16652120_SNP [dm6]	G	A	5.026e^-4	0.928	NON_SYNONYMOUS_CODING CG14907 UPSTREAM CG14906 DOWNSTREAM modSP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22459494	3R_22459494_SNP [dm3] 3R_26633772_SNP [dm6]	C	A	5.032e^-4	0.928	UTR_5_PRIME TwdlH DOWNSTREAM TwdlN
X	17654512	X_17654512_SNP [dm3] X_17760479_SNP [dm6]	C	T	5.039e^-4	0.928	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1250179	3R_1250179_SNP [dm3] 3R_5424457_SNP [dm6]	G	T	5.042e^-4	0.928	DOWNSTREAM CG12147 INTRON CG14669
3L	21595047	3L_21595047_SNP [dm3] 3L_21601947_SNP [dm6]	C	G	5.047e^-4	0.928	INTRON TfAP-2	TF binding site mE1_TFBS_cad
3R	21632735	3R_21632735_SNP [dm3] 3R_25807013_SNP [dm6]	T	C	5.049e^-4	0.928	DOWNSTREAM BG642167 INTERGENIC
3L	9543492	3L_9543492_SNP [dm3] 3L_9550392_SNP [dm6]	C	T	5.052e^-4	0.928	INTRON CG42673
2L	12729499	2L_12729499_SNP [dm3] 2L_12729499_SNP [dm6]	A	G	5.056e^-4	0.928	INTRON MRP
2R	6140793	2R_6140793_SNP [dm3] 2R_10253288_SNP [dm6]	C	T	5.061e^-4	0.928	NON_SYNONYMOUS_CODING CG12913 UPSTREAM Syb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22940230	3R_22940230_SNP [dm3] 3R_27114508_SNP [dm6]	C	G	5.070e^-4	0.928	DOWNSTREAM CG6066 INTRON CG5815
3L	12548533	3L_12548533_SNP [dm3] 3L_12555433_SNP [dm6]	A	T	5.070e^-4	0.928	INTRON sowah
2R	12237771	2R_12237771_SNP [dm3] 2R_16350266_SNP [dm6]	T	C	5.071e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8091288	2R_8091288_SNP [dm3] 2R_12203783_SNP [dm6]	G	T	5.081e^-4	0.928	INTERGENIC
3L	5142037	3L_5142037_SNP [dm3] 3L_5148937_SNP [dm6]	C	T	5.097e^-4	0.928	SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen	TF binding site mE1_TFBS_chinmo
2L	14550370	2L_14550370_SNP [dm3] 2L_14550370_SNP [dm6]	T	C	5.097e^-4	0.928	DOWNSTREAM CR44853 INTERGENIC	TF binding site mE1_TFBS_cad
2L	5974992	2L_5974992_SNP [dm3] 2L_5974992_SNP [dm6]	A	C	5.106e^-4	0.928	INTRON chic
2L	7852194	2L_7852194_SNP [dm3] 2L_7852194_SNP [dm6]	A	T	5.114e^-4	0.928	INTRON CG14535
3R	21855797	3R_21855797_SNP [dm3] 3R_26030075_SNP [dm6]	G	C	5.115e^-4	0.928	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7026435	2R_7026435_SNP [dm3] 2R_11138930_SNP [dm6]	T	A	5.117e^-4	0.928	DOWNSTREAM CG13229 INTRON BBS4
2L	5804046	2L_5804046_SNP [dm3] 2L_5804046_SNP [dm6]	T	C	5.126e^-4	0.928	DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11048290	3L_11048290_SNP [dm3] 3L_11055190_SNP [dm6]	A	C	5.129e^-4	0.928	UPSTREAM CG7888 INTRON CG7888
3R	17060243	3R_17060243_SNP [dm3] 3R_21234521_SNP [dm6]	G	T	5.129e^-4	0.928	INTRON e	regulatory region REDfly_CRMs
3R	19164915	3R_19164915_SNP [dm3] 3R_23339193_SNP [dm6]	T	A	5.134e^-4	0.928	INTRON pnt
3R	3239750	3R_3239750_SNP [dm3] 3R_7414028_SNP [dm6]	T	C	5.146e^-4	0.928	INTERGENIC
X	19520777	X_19520777_SNP [dm3] X_19626744_SNP [dm6]	C	T	5.151e^-4	0.928	UTR_3_PRIME e_y_3 DOWNSTREAM CG14212
3L	19370107	3L_19370107_SNP [dm3] 3L_19377007_SNP [dm6]	G	A	5.156e^-4	0.928	INTRON CG32206
3L	18438200	3L_18438200_SNP [dm3] 3L_18445100_SNP [dm6]	T	C	5.156e^-4	0.928	INTERGENIC
2R	14425168	2R_14425168_SNP [dm3] 2R_18537663_SNP [dm6]	G	A	5.167e^-4	0.928	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15402110	2L_15402110_SNP [dm3] 2L_15402110_SNP [dm6]	C	A	5.173e^-4	0.928	INTERGENIC
3R	5306425	3R_5306425_SNP [dm3] 3R_9480703_SNP [dm6]	G	C	5.176e^-4	0.928	INTRON CG16779	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8090765	2R_8090765_SNP [dm3] 2R_12203260_SNP [dm6]	C	T	5.177e^-4	0.928	INTERGENIC
2L	15553874	2L_15553874_SNP [dm3] 2L_15553874_SNP [dm6]	G	A	5.184e^-4	0.928	INTRON kek3
2L	17072094	2L_17072094_SNP [dm3] 2L_17072094_SNP [dm6]	G	A	5.185e^-4	0.928	INTERGENIC
2L	8228123	2L_8228123_SNP [dm3] 2L_8228123_SNP [dm6]	C	T	5.185e^-4	0.928	SYNONYMOUS_CODING Pvr INTRON Pvr
3R	22937554	3R_22937554_SNP [dm3] 3R_27111832_SNP [dm6]	G	C	5.193e^-4	0.928	UTR_5_PRIME gb UPSTREAM CG5815 & 1 other DOWNSTREAM CR45209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	22019191	X_22019191_INS [dm3] X_22617355_INS [dm6]	A	AT	5.199e^-4	0.928	INTRON Cda4
2L	7212860	2L_7212860_SNP [dm3] 2L_7212860_SNP [dm6]	A	G	5.205e^-4	0.928	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14518800	3R_14518800_SNP [dm3] 3R_18693078_SNP [dm6]	T	G	5.218e^-4	0.928	UPSTREAM Muc91C DOWNSTREAM CG14300 INTERGENIC
2R	6309146	2R_6309146_DEL [dm3] 2R_10421641_DEL [dm6]	AGCA	A	5.220e^-4	0.928	UTR_5_PRIME CG11825 UPSTREAM CG33474 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	8092369	2R_8092369_DEL [dm3] 2R_12204864_DEL [dm6]	AGTCTTTAGGA...	T	5.223e^-4	0.928	INTERGENIC
2R	8109912	2R_8109912_SNP [dm3] 2R_12222407_SNP [dm6]	C	A	5.224e^-4	0.928	INTERGENIC
3L	19367175	3L_19367175_SNP [dm3] 3L_19374075_SNP [dm6]	G	A	5.225e^-4	0.928	INTRON CG32206
3R	22944760	3R_22944760_SNP [dm3] 3R_27119038_SNP [dm6]	G	A	5.230e^-4	0.928	DOWNSTREAM CG5880 INTRON CG5882	TF binding site mE1_TFBS_cad
3L	18258329	3L_18258329_SNP [dm3] 3L_18265229_SNP [dm6]	T	C	5.235e^-4	0.928	INTERGENIC
2R	7257030	2R_7257030_SNP [dm3] 2R_11369525_SNP [dm6]	G	A	5.238e^-4	0.928	SYNONYMOUS_CODING CG13204 DOWNSTREAM Tapdelta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	12393250	3R_12393250_SNP [dm3] 3R_16567528_SNP [dm6]	T	C	5.238e^-4	0.928	UTR_3_PRIME CG42342 INTRON CG42342
2L	5839814	2L_5839814_SNP [dm3] 2L_5839814_SNP [dm6]	T	C	5.246e^-4	0.928	INTRON TrissinR
2L	22939258	2L_22939258_SNP [dm3] 2L_23046526_SNP [dm6]	G	C	5.247e^-4	0.928	INTERGENIC
3R	4352584	3R_4352584_SNP [dm3] 3R_8526862_SNP [dm6]	G	A	5.248e^-4	0.928	DOWNSTREAM CG31259 INTERGENIC
2L	3231585	2L_3231585_SNP [dm3] 2L_3231585_SNP [dm6]	C	T	5.254e^-4	0.928	INTERGENIC
3L	20059053	3L_20059053_SNP [dm3] 3L_20065953_SNP [dm6]	T	A	5.260e^-4	0.928	INTRON sNPF-R
2R	5646719	2R_5646719_INS [dm3] 2R_9759214_INS [dm6]	A	AACA	5.274e^-4	0.928	INTRON trpl
2L	16559567	2L_16559567_SNP [dm3] 2L_16559567_SNP [dm6]	T	C	5.282e^-4	0.928	NON_SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16037943	2R_16037943_SNP [dm3] 2R_20150438_SNP [dm6]	A	G	5.294e^-4	0.928	UPSTREAM CR45229 INTERGENIC
3L	10118202	3L_10118202_SNP [dm3] 3L_10125102_SNP [dm6]	T	C	5.299e^-4	0.928	INTRON dpr6
2L	13438244	2L_13438244_SNP [dm3] 2L_13438244_SNP [dm6]	A	G	5.303e^-4	0.928	SYNONYMOUS_CODING Tehao INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_cad
2L	3231840	2L_3231840_SNP [dm3] 2L_3231840_SNP [dm6]	A	C	5.304e^-4	0.928	INTERGENIC
2R	18347316	2R_18347316_SNP [dm3] 2R_22459811_SNP [dm6]	A	T	5.307e^-4	0.928	INTRON CG10384
2R	8092527	2R_8092527_SNP [dm3] 2R_12205022_SNP [dm6]	C	T	5.323e^-4	0.928	INTERGENIC
2L	8893286	2L_8893286_SNP [dm3] 2L_8893286_SNP [dm6]	G	A	5.333e^-4	0.928	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.641e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	1.955e-05

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	9.6545	0.008

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1646 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16088468	2R_16088468_SNP [dm3] 2R_20200963_SNP [dm6]	T	G	3.737e^-6	1	INTERGENIC
2R	16088555	2R_16088555_SNP [dm3] 2R_20201050_SNP [dm6]	A	T	3.869e^-6	1	INTERGENIC
2R	16088474	2R_16088474_SNP [dm3] 2R_20200969_SNP [dm6]	A	C	4.302e^-6	1	INTERGENIC
2R	16088501	2R_16088501_SNP [dm3] 2R_20200996_SNP [dm6]	A	C	4.389e^-6	1	INTERGENIC
3L	10895528	3L_10895528_SNP [dm3] 3L_10902428_SNP [dm6]	C	T	4.489e^-6	1	INTERGENIC
2R	16088496	2R_16088496_SNP [dm3] 2R_20200991_SNP [dm6]	T	A	4.652e^-6	1	INTERGENIC
3L	5312685	3L_5312685_SNP [dm3] 3L_5319585_SNP [dm6]	T	C	7.591e^-6	1	INTERGENIC
3R	21529300	3R_21529300_SNP [dm3] 3R_25703578_SNP [dm6]	G	A	8.323e^-6	1	INTRON LpR2
2R	16088533	2R_16088533_SNP [dm3] 2R_20201028_SNP [dm6]	G	A	8.873e^-6	1	INTERGENIC
2R	16088534	2R_16088534_SNP [dm3] 2R_20201029_SNP [dm6]	T	G	8.873e^-6	1	INTERGENIC
2R	16088498	2R_16088498_INS [dm3] 2R_20200993_INS [dm6]	T	TGTAG	9.098e^-6	1	INTERGENIC
2R	16088506	2R_16088506_INS [dm3] 2R_20201001_INS [dm6]	T	TCT	9.098e^-6	1	INTERGENIC
3L	5312795	3L_5312795_SNP [dm3] 3L_5319695_SNP [dm6]	C	T	9.109e^-6	1	INTERGENIC
2L	13637267	2L_13637267_SNP [dm3] 2L_13637267_SNP [dm6]	C	T	9.209e^-6	1	DOWNSTREAM kuz INTRON kuz
2R	20222412	2R_20222412_SNP [dm3] 2R_24334889_SNP [dm6]	C	T	1.173e^-5	1	UPSTREAM slbo EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10698818	2L_10698818_SNP [dm3] 2L_10698818_SNP [dm6]	G	A	1.199e^-5	1	UPSTREAM CG7300 DOWNSTREAM CR44181 & 1 other INTERGENIC
3L	19618936	3L_19618936_SNP [dm3] 3L_19625836_SNP [dm6]	G	A	1.354e^-5	1	SYNONYMOUS_CODING wnd	TF binding site mE1_TFBS_sens
X	4108956	X_4108956_SNP [dm3] X_4214923_SNP [dm6]	C	T	1.439e^-5	1	INTERGENIC
3R	25020656	3R_25020656_SNP [dm3] 3R_29194934_SNP [dm6]	C	T	1.456e^-5	1	UTR_5_PRIME CG14509
3L	5312675	3L_5312675_SNP [dm3] 3L_5319575_SNP [dm6]	G	T	1.598e^-5	1	INTERGENIC
3R	20862102	3R_20862102_SNP [dm3] 3R_25036380_SNP [dm6]	G	T	1.673e^-5	1	UPSTREAM CG31115 INTRON CG6422
2L	16503589	2L_16503589_SNP [dm3] 2L_16503589_SNP [dm6]	G	A	1.729e^-5	1	INTRON Tpr2
3R	21529357	3R_21529357_SNP [dm3] 3R_25703635_SNP [dm6]	G	T	1.784e^-5	1	INTRON LpR2
2R	13864914	2R_13864914_SNP [dm3] 2R_17977409_SNP [dm6]	C	T	1.868e^-5	1	INTRON dpr13
3L	3679791	3L_3679791_SNP [dm3] 3L_3679791_SNP [dm6]	A	G	1.948e^-5	1	INTERGENIC
2L	13637268	2L_13637268_SNP [dm3] 2L_13637268_SNP [dm6]	T	C	1.967e^-5	1	DOWNSTREAM kuz INTRON kuz
2R	16088408	2R_16088408_SNP [dm3] 2R_20200903_SNP [dm6]	A	G	1.984e^-5	1	INTERGENIC
3R	17602872	3R_17602872_SNP [dm3] 3R_21777150_SNP [dm6]	A	T	2.100e^-5	1	SYNONYMOUS_CODING CG6800 DOWNSTREAM RpI12 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2157213	3L_2157213_SNP [dm3] 3L_2157213_SNP [dm6]	C	G	2.108e^-5	1	INTRON CG15822	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9331210	2L_9331210_SNP [dm3] 2L_9331210_SNP [dm6]	A	T	2.192e^-5	1	SYNONYMOUS_CODING Cks30A DOWNSTREAM CG17005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	3358320	3L_3358320_SNP [dm3] 3L_3358320_SNP [dm6]	A	G	2.285e^-5	1	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	18698552	2R_18698552_SNP [dm3] 2R_22811047_SNP [dm6]	C	T	2.358e^-5	1	INTRON stl
2R	16088749	2R_16088749_SNP [dm3] 2R_20201244_SNP [dm6]	G	C	2.375e^-5	1	INTERGENIC
X	14235666	X_14235666_SNP [dm3] X_14341633_SNP [dm6]	A	G	2.409e^-5	1	INTRON dpr8
3L	3359205	3L_3359205_SNP [dm3] 3L_3359205_SNP [dm6]	C	A	2.498e^-5	1	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20301114	3R_20301114_SNP [dm3] 3R_24475392_SNP [dm6]	C	T	2.510e^-5	1	INTERGENIC
2R	1103431	2R_1103431_SNP [dm3] 2R_5215926_SNP [dm6]	A	C	2.511e^-5	1	INTRON Nipped-A	transposable element FlyBase
3R	25808695	3R_25808695_SNP [dm3] 3R_29982973_SNP [dm6]	G	A	2.726e^-5	1	UPSTREAM CG7896 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	5359980	3R_5359980_SNP [dm3] 3R_9534258_SNP [dm6]	G	C	2.767e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6256888	3L_6256888_SNP [dm3] 3L_6263788_SNP [dm6]	C	A	2.938e^-5	1	UPSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18961634	3R_18961634_SNP [dm3] 3R_23135912_SNP [dm6]	C	T	3.006e^-5	1	INTRON hh	regulatory region REDfly_CRMs
3L	1329144	3L_1329144_SNP [dm3] 3L_1329144_SNP [dm6]	C	T	3.018e^-5	1	SYNONYMOUS_CODING Myo61F UPSTREAM mtacp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13915534	3L_13915534_SNP [dm3] 3L_13922434_SNP [dm6]	G	A	3.097e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	23614838	3R_23614838_SNP [dm3] 3R_27789116_SNP [dm6]	G	T	3.167e^-5	1	SPLICE_SITE_REGION CG34353 INTRON CG34353	TF binding site mE1_TFBS_chinmo
3L	18492198	3L_18492198_SNP [dm3] 3L_18499098_SNP [dm6]	T	C	3.175e^-5	1	INTRON AstC-R2
2L	15356340	2L_15356340_SNP [dm3] 2L_15356340_SNP [dm6]	A	G	3.352e^-5	1	INTERGENIC
2L	20786377	2L_20786377_SNP [dm3] 2L_20786377_SNP [dm6]	T	A	3.381e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13915536	3L_13915536_SNP [dm3] 3L_13922436_SNP [dm6]	G	T	3.391e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	13915547	3L_13915547_SNP [dm3] 3L_13922447_SNP [dm6]	G	A	3.391e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	13684268	2L_13684268_SNP [dm3] 2L_13684268_SNP [dm6]	G	A	3.440e^-5	1	SPLICE_SITE_REGION CG31814 INTRON CG31814
3L	13915569	3L_13915569_SNP [dm3] 3L_13922469_SNP [dm6]	T	A	3.519e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	13915573	3L_13915573_SNP [dm3] 3L_13922473_SNP [dm6]	A	C	3.519e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	2814770	X_2814770_SNP [dm3] X_2920737_SNP [dm6]	T	A	3.550e^-5	1	INTRON kirre & 1 other
2L	2671256	2L_2671256_SNP [dm3] 2L_2671256_SNP [dm6]	C	G	3.671e^-5	1	NON_SYNONYMOUS_CODING Gr23a INTRON Gr23a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13854148	3R_13854148_SNP [dm3] 3R_18028426_SNP [dm6]	A	G	3.754e^-5	1	INTERGENIC
3R	13361697	3R_13361697_SNP [dm3] 3R_17535975_SNP [dm6]	G	C	3.798e^-5	1	UTR_5_PRIME P5cr-2 DOWNSTREAM l_3_07882 INTRON P5cr-2
2L	8758077	2L_8758077_SNP [dm3] 2L_8758077_SNP [dm6]	C	A	3.855e^-5	1	INTERGENIC
3R	26934550	3R_26934550_SNP [dm3] 3R_31108828_SNP [dm6]	G	A	3.883e^-5	1	SYNONYMOUS_CODING CG11318	TF binding site mE1_TFBS_cad
3L	13915499	3L_13915499_SNP [dm3] 3L_13922399_SNP [dm6]	T	C	3.974e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	18435031	3R_18435031_SNP [dm3] 3R_22609309_SNP [dm6]	T	A	4.087e^-5	1	UPSTREAM CG13843 DOWNSTREAM Efa6 INTRON CG31156	TF binding site mE1_TFBS_inv
3L	13915512	3L_13915512_SNP [dm3] 3L_13922412_SNP [dm6]	T	G	4.155e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	16969196	3L_16969196_SNP [dm3] 3L_16976096_SNP [dm6]	C	G	4.204e^-5	1	UPSTREAM Exn INTRON Exn
2L	231396	2L_231396_SNP [dm3] 2L_231396_SNP [dm6]	A	G	4.289e^-5	1	DOWNSTREAM snoRNA:kis-a INTRON kis
2L	2068418	2L_2068418_SNP [dm3] 2L_2068418_SNP [dm6]	C	T	4.344e^-5	1	INTRON dpr3	TF binding site mE1_TFBS_chinmo
X	20475360	X_20475360_SNP [dm3] X_20604333_SNP [dm6]	G	A	4.388e^-5	1	SYNONYMOUS_CODING RunxA	TF binding site mE1_TFBS_chinmo
3R	18917120	3R_18917120_SNP [dm3] 3R_23091398_SNP [dm6]	C	G	4.392e^-5	1	UPSTREAM CG6726 & 1 other INTRON CG13830
2R	18660348	2R_18660348_SNP [dm3] 2R_22772843_SNP [dm6]	T	A	4.515e^-5	1	INTRON CG42260
2L	19028422	2L_19028422_SNP [dm3] 2L_19028422_SNP [dm6]	A	C	4.548e^-5	1	INTRON Side
X	14428988	X_14428988_SNP [dm3] X_14534955_SNP [dm6]	G	A	4.578e^-5	1	INTERGENIC
X	1699574	X_1699574_SNP [dm3] X_1805541_SNP [dm6]	G	T	4.619e^-5	1	INTRON CG42666	TF binding site mE1_TFBS_chinmo
X	13287592	X_13287592_SNP [dm3] X_13393559_SNP [dm6]	T	C	4.662e^-5	1	INTERGENIC
3L	2445376	3L_2445376_SNP [dm3] 3L_2445376_SNP [dm6]	C	T	4.667e^-5	1	SYNONYMOUS_CODING CG45186	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8634506	2L_8634506_SNP [dm3] 2L_8634506_SNP [dm6]	T	G	4.677e^-5	1	INTRON Sema-1a
3R	11502665	3R_11502665_DEL [dm3] 3R_15676943_DEL [dm6]	CC	A	4.767e^-5	1	INTRON pxb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17659344	3R_17659344_SNP [dm3] 3R_21833622_SNP [dm6]	C	T	5.062e^-5	1	SYNONYMOUS_CODING Gr93a	TF binding site BDTNP1_TFBS_twi
3R	16602134	3R_16602134_SNP [dm3] 3R_20776412_SNP [dm6]	C	T	5.066e^-5	1	INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2671757	2L_2671757_SNP [dm3] 2L_2671757_SNP [dm6]	C	T	5.084e^-5	1	SYNONYMOUS_CODING Gr23a INTRON Gr23a
3L	13915504	3L_13915504_SNP [dm3] 3L_13922404_SNP [dm6]	G	A	5.174e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	18660356	2R_18660356_INS [dm3] 2R_22772851_INS [dm6]	A	ACTTTT	5.334e^-5	1	INTRON CG42260
3L	5312701	3L_5312701_INS [dm3] 3L_5319601_INS [dm6]	A	AT	5.345e^-5	1	INTERGENIC
3L	5312703	3L_5312703_INS [dm3] 3L_5319603_INS [dm6]	T	TGC	5.345e^-5	1	INTERGENIC
3L	9696880	3L_9696880_SNP [dm3] 3L_9703780_SNP [dm6]	C	T	5.419e^-5	1	UPSTREAM CG16711 & 1 other INTERGENIC
2R	17580466	2R_17580466_SNP [dm3] 2R_21692961_SNP [dm6]	C	T	5.627e^-5	1	NON_SYNONYMOUS_CODING CngB DOWNSTREAM Ppcdc & 1 other	TF binding site mE1_TFBS_cad
2L	15150589	2L_15150589_SNP [dm3] 2L_15150589_SNP [dm6]	A	G	5.674e^-5	1	INTERGENIC
2R	14426690	2R_14426690_SNP [dm3] 2R_18539185_SNP [dm6]	C	A	5.722e^-5	1	UTR_3_PRIME CG45087 & 1 other UPSTREAM Rgk2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13864903	2R_13864903_DEL [dm3] 2R_17977398_DEL [dm6]	AT	A	5.755e^-5	1	INTRON dpr13
3L	2157181	3L_2157181_SNP [dm3] 3L_2157181_SNP [dm6]	T	C	5.879e^-5	1	INTRON CG15822	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1330722	3L_1330722_SNP [dm3] 3L_1330722_SNP [dm6]	A	T	5.929e^-5	1	INTRON mtacp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13915542	3L_13915542_SNP [dm3] 3L_13922442_SNP [dm6]	A	C	6.103e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	2462364	3L_2462364_SNP [dm3] 3L_2462364_SNP [dm6]	C	T	6.174e^-5	1	UPSTREAM CG45186 INTRON CG45186
3L	1330664	3L_1330664_SNP [dm3] 3L_1330664_SNP [dm6]	C	T	6.189e^-5	1	INTRON mtacp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	19069868	3L_19069868_SNP [dm3] 3L_19076768_SNP [dm6]	T	C	6.228e^-5	1	INTRON Mkp3
2L	9331228	2L_9331228_SNP [dm3] 2L_9331228_SNP [dm6]	T	C	6.232e^-5	1	SYNONYMOUS_CODING Cks30A DOWNSTREAM CG17005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	3358932	3L_3358932_SNP [dm3] 3L_3358932_SNP [dm6]	G	T	6.321e^-5	1	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20704451	2R_20704451_SNP [dm3] 2R_24816928_SNP [dm6]	T	C	6.354e^-5	1	INTRON Dll
X	6773277	X_6773277_SNP [dm3] X_6879244_SNP [dm6]	C	T	6.491e^-5	1	NON_SYNONYMOUS_CODING CG43736 UTR_3_PRIME CG43736	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10779275	3R_10779275_SNP [dm3] 3R_14953553_SNP [dm6]	T	G	6.498e^-5	1	INTERGENIC
2R	19138965	2R_19138965_SNP [dm3] 2R_23251442_SNP [dm6]	G	T	6.507e^-5	1	INTERGENIC
3R	19249054	3R_19249054_SNP [dm3] 3R_23423332_SNP [dm6]	T	A	6.607e^-5	1	INTRON CG4374	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9502688	2R_9502688_SNP [dm3] 2R_13615183_SNP [dm6]	T	C	6.621e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16088529	2R_16088529_SNP [dm3] 2R_20201024_SNP [dm6]	T	A	6.625e^-5	1	INTERGENIC
3R	18750411	3R_18750411_SNP [dm3] 3R_22924689_SNP [dm6]	G	A	6.627e^-5	1	DOWNSTREAM CG6660 INTRON klg
3L	11127007	3L_11127007_SNP [dm3] 3L_11133907_SNP [dm6]	A	C	6.721e^-5	1	SYNONYMOUS_CODING CG42575	TF binding site mE1_TFBS_cad
3L	5312718	3L_5312718_SNP [dm3] 3L_5319618_SNP [dm6]	C	T	6.850e^-5	1	INTERGENIC
2L	2671270	2L_2671270_SNP [dm3] 2L_2671270_SNP [dm6]	C	T	6.895e^-5	1	SYNONYMOUS_CODING Gr23a INTRON Gr23a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11146283	2R_11146283_SNP [dm3] 2R_15258778_SNP [dm6]	G	T	6.917e^-5	1	NON_SYNONYMOUS_CODING ItgalphaPS4 DOWNSTREAM scb
X	9277713	X_9277713_SNP [dm3] X_9383680_SNP [dm6]	G	C	6.923e^-5	1	INTRON mgl
3L	9697243	3L_9697243_SNP [dm3] 3L_9704143_SNP [dm6]	C	A	6.956e^-5	1	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19140193	3R_19140193_SNP [dm3] 3R_23314471_SNP [dm6]	C	A	6.973e^-5	1	UPSTREAM pnt INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3279544	3L_3279544_SNP [dm3] 3L_3279544_SNP [dm6]	A	C	7.046e^-5	1	UPSTREAM CG12017 INTERGENIC
3L	2445325	3L_2445325_SNP [dm3] 3L_2445325_SNP [dm6]	A	G	7.091e^-5	1	SYNONYMOUS_CODING CG45186	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26934664	3R_26934664_SNP [dm3] 3R_31108942_SNP [dm6]	T	A	7.103e^-5	1	SYNONYMOUS_CODING CG11318	TF binding site mE1_TFBS_cad
2L	8758061	2L_8758061_SNP [dm3] 2L_8758061_SNP [dm6]	T	G	7.107e^-5	1	INTERGENIC
3R	15973654	3R_15973654_SNP [dm3] 3R_20147932_SNP [dm6]	G	C	7.113e^-5	1	INTERGENIC
2R	12008855	2R_12008855_SNP [dm3] 2R_16121350_SNP [dm6]	C	A	7.214e^-5	1	NON_SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd
3L	19620705	3L_19620705_SNP [dm3] 3L_19627605_SNP [dm6]	G	A	7.241e^-5	1	SYNONYMOUS_CODING wnd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16922093	2R_16922093_SNP [dm3] 2R_21034588_SNP [dm6]	T	C	7.255e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25806074	3R_25806074_SNP [dm3] 3R_29980352_SNP [dm6]	C	A	7.317e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12584720	2R_12584720_SNP [dm3] 2R_16697215_SNP [dm6]	A	T	7.343e^-5	1	INTRON CG30463
2R	17579902	2R_17579902_SNP [dm3] 2R_21692397_SNP [dm6]	C	G	7.411e^-5	1	DOWNSTREAM CngB INTRON Ppcdc & 1 other	TF binding site mE1_TFBS_cad
3R	14924547	3R_14924547_SNP [dm3] 3R_19098825_SNP [dm6]	C	G	7.554e^-5	1	INTRON CG6040
3R	25114474	3R_25114474_SNP [dm3] 3R_29288752_SNP [dm6]	G	T	7.626e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9702124	3L_9702124_SNP [dm3] 3L_9709024_SNP [dm6]	G	A	7.677e^-5	1	SYNONYMOUS_CODING CG16711 UTR_3_PRIME CG16711	TF binding site mE1_TFBS_cad
3L	14904022	3L_14904022_SNP [dm3] 3L_14910922_SNP [dm6]	T	A	7.721e^-5	1	INTRON DCX-EMAP
3R	18961660	3R_18961660_INS [dm3] 3R_23135938_INS [dm6]	A	AAATA	7.793e^-5	1	INTRON hh	regulatory region REDfly_CRMs
2R	16443724	2R_16443724_SNP [dm3] 2R_20556219_SNP [dm6]	G	T	7.962e^-5	1	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25812277	3R_25812277_SNP [dm3] 3R_29986555_SNP [dm6]	C	T	8.024e^-5	1	SYNONYMOUS_CODING CG7896	TF binding site mE1_TFBS_HSA
3L	5312715	3L_5312715_SNP [dm3] 3L_5319615_SNP [dm6]	A	T	8.073e^-5	1	INTERGENIC
2R	17973086	2R_17973086_SNP [dm3] 2R_22085581_SNP [dm6]	A	G	8.078e^-5	1	UTR_3_PRIME Synj DOWNSTREAM CG13502 & 1 other
2R	19668754	2R_19668754_SNP [dm3] 2R_23781231_SNP [dm6]	T	G	8.114e^-5	1	INTRON CG9850
3R	9489308	3R_9489308_SNP [dm3] 3R_13663586_SNP [dm6]	A	G	8.119e^-5	1	UTR_3_PRIME B52 INTRON B52
2L	8758139	2L_8758139_SNP [dm3] 2L_8758139_SNP [dm6]	A	T	8.162e^-5	1	INTERGENIC
2L	8758088	2L_8758088_SNP [dm3] 2L_8758088_SNP [dm6]	A	G	8.223e^-5	1	INTERGENIC
3L	1291347	3L_1291347_SNP [dm3] 3L_1291347_SNP [dm6]	A	G	8.273e^-5	1	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2652131	3R_2652131_SNP [dm3] 3R_6826409_SNP [dm6]	G	C	8.673e^-5	1	INTRON Scr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6256920	3L_6256920_SNP [dm3] 3L_6263820_SNP [dm6]	C	G	8.681e^-5	1	UPSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10644633	2R_10644633_SNP [dm3] 2R_14757128_SNP [dm6]	T	C	8.971e^-5	1	SYNONYMOUS_CODING Trs31 UPSTREAM CG10151 DOWNSTREAM CG12857 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16916552	2L_16916552_SNP [dm3] 2L_16916552_SNP [dm6]	C	T	9.013e^-5	1	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_inv
3L	20864645	3L_20864645_SNP [dm3] 3L_20871545_SNP [dm6]	G	T	9.064e^-5	1	INTRON CG32432
3L	19618344	3L_19618344_SNP [dm3] 3L_19625244_SNP [dm6]	A	G	9.088e^-5	1	UTR_3_PRIME wnd DOWNSTREAM ms_3_76Cc & 1 other
3L	12840661	3L_12840661_SNP [dm3] 3L_12847561_SNP [dm6]	A	C	9.226e^-5	1	INTRON CG10948
2L	1952064	2L_1952064_SNP [dm3] 2L_1952064_SNP [dm6]	T	C	9.335e^-5	1	SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10644914	2R_10644914_SNP [dm3] 2R_14757409_SNP [dm6]	T	C	9.437e^-5	1	SYNONYMOUS_CODING Trs31 DOWNSTREAM CG12857 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	12995348	3R_12995348_SNP [dm3] 3R_17169626_SNP [dm6]	T	A	9.666e^-5	1	INTRON Mur89F
3L	17543290	3L_17543290_SNP [dm3] 3L_17550190_SNP [dm6]	C	T	9.699e^-5	1	SYNONYMOUS_CODING CG7542 DOWNSTREAM CycT	TF binding site mE1_TFBS_HSA
2R	19139167	2R_19139167_SNP [dm3] 2R_23251644_SNP [dm6]	T	A	9.705e^-5	1	INTERGENIC
X	3402749	X_3402749_SNP [dm3] X_3508716_SNP [dm6]	G	A	9.727e^-5	1	UTR_3_PRIME CG32791 INTRON CR44999	TF binding site BDTNP1_TFBS_da
2L	758200	2L_758200_DEL [dm3] 2L_758200_DEL [dm6]	TGGCG	A	9.762e^-5	1	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2592128	X_2592128_SNP [dm3] X_2698095_SNP [dm6]	T	A	9.916e^-5	1	UTR_5_PRIME CG2658 UPSTREAM CG2662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	1693613	3L_1693613_SNP [dm3] 3L_1693613_SNP [dm6]	C	A	9.920e^-5	1	INTRON CG7991
3R	16602096	3R_16602096_SNP [dm3] 3R_20776374_SNP [dm6]	C	A	9.958e^-5	1	INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9974029	2R_9974029_SNP [dm3] 2R_14086524_SNP [dm6]	G	T	1.010e^-4	1	INTRON Prosap
2R	17580491	2R_17580491_SNP [dm3] 2R_21692986_SNP [dm6]	C	T	1.012e^-4	1	SYNONYMOUS_CODING CngB DOWNSTREAM Ppcdc & 1 other	TF binding site mE1_TFBS_cad
2L	2076468	2L_2076468_DEL [dm3] 2L_2076468_DEL [dm6]	TATTTTTCTATT...	T	1.014e^-4	1	INTRON dpr3
X	16609435	X_16609435_SNP [dm3] X_16715402_SNP [dm6]	T	A	1.014e^-4	1	INTRON CG34325
3L	1215132	3L_1215132_SNP [dm3] 3L_1215132_SNP [dm6]	A	C	1.016e^-4	1	INTRON mwh
X	3970718	X_3970718_DEL [dm3] X_4076685_DEL [dm6]	TAAATT	C	1.018e^-4	1	INTRON CG43689
3L	1329728	3L_1329728_SNP [dm3] 3L_1329728_SNP [dm6]	C	A	1.019e^-4	1	UPSTREAM mtacp1 DOWNSTREAM Myo61F INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23501388	3R_23501388_SNP [dm3] 3R_27675666_SNP [dm6]	T	C	1.039e^-4	1	INTRON unc80	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19199446	2L_19199446_SNP [dm3] 2L_19199446_SNP [dm6]	G	A	1.039e^-4	1	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12345205	3R_12345205_SNP [dm3] 3R_16519483_SNP [dm6]	A	G	1.063e^-4	1	INTRON CG42342
3R	23393871	3R_23393871_SNP [dm3] 3R_27568149_SNP [dm6]	C	T	1.069e^-4	1	UTR_5_PRIME wdb	TF binding site mE1_TFBS_HSA
3L	9697352	3L_9697352_SNP [dm3] 3L_9704252_SNP [dm6]	T	C	1.070e^-4	1	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12632757	2R_12632757_SNP [dm3] 2R_16745252_SNP [dm6]	T	G	1.076e^-4	1	UTR_3_PRIME CG15617 UPSTREAM Sfp53D
3L	14977007	3L_14977007_SNP [dm3] 3L_14983907_SNP [dm6]	G	T	1.086e^-4	1	SPLICE_SITE_REGION CG5114 INTRON CG5114	TF binding site mE1_TFBS_sens
X	8761943	X_8761943_SNP [dm3] X_8867910_SNP [dm6]	T	A	1.123e^-4	1	INTRON CG12075	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25823914	3R_25823914_SNP [dm3] 3R_29998192_SNP [dm6]	C	T	1.127e^-4	1	UTR_5_PRIME CG11504 UPSTREAM CG15525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2598089	2R_2598089_SNP [dm3] 2R_6710584_SNP [dm6]	A	T	1.129e^-4	1	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	16741734	3R_16741734_SNP [dm3] 3R_20916012_SNP [dm6]	A	T	1.130e^-4	1	INTRON CG31191 & 1 other
3R	26962404	3R_26962404_SNP [dm3] 3R_31136682_SNP [dm6]	T	A	1.133e^-4	1	INTRON Gycbeta100B
3L	7400920	3L_7400920_SNP [dm3] 3L_7407820_SNP [dm6]	T	G	1.137e^-4	1	DOWNSTREAM CR44525 INTERGENIC
3R	16899060	3R_16899060_DEL [dm3] 3R_21073338_DEL [dm6]	TGT	T	1.141e^-4	1	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	6255808	3L_6255808_SNP [dm3] 3L_6262708_SNP [dm6]	T	C	1.145e^-4	1	UPSTREAM ImpL3 DOWNSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2670674	2L_2670674_SNP [dm3] 2L_2670674_SNP [dm6]	C	T	1.167e^-4	1	SYNONYMOUS_CODING Gr23a UPSTREAM Gr23a	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	17458317	3R_17458317_SNP [dm3] 3R_21632595_SNP [dm6]	T	G	1.173e^-4	1	UTR_5_PRIME E2f INTRON E2f	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	18420841	3R_18420841_SNP [dm3] 3R_22595119_SNP [dm6]	A	T	1.223e^-4	1	INTRON Efa6	TF binding site BDTNP1_TFBS_dl
3L	16658080	3L_16658080_DEL [dm3] 3L_16664980_DEL [dm6]	TT	T	1.225e^-4	1	INTRON Galphaf
2R	3576312	2R_3576312_SNP [dm3] 2R_7688807_SNP [dm6]	T	G	1.227e^-4	1	INTRON CG1399
X	8706574	X_8706574_SNP [dm3] X_8812541_SNP [dm6]	A	G	1.233e^-4	1	INTERGENIC
3L	14249623	3L_14249623_SNP [dm3] 3L_14256523_SNP [dm6]	T	C	1.239e^-4	1	INTERGENIC
3L	9696339	3L_9696339_SNP [dm3] 3L_9703239_SNP [dm6]	A	G	1.246e^-4	1	SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14195844	3R_14195844_SNP [dm3] 3R_18370122_SNP [dm6]	G	C	1.256e^-4	1	SYNONYMOUS_CODING gl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10644734	2R_10644734_SNP [dm3] 2R_14757229_SNP [dm6]	C	T	1.261e^-4	1	UPSTREAM CG10151 DOWNSTREAM CG12857 & 1 other INTRON Trs31	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1215056	3L_1215056_SNP [dm3] 3L_1215056_SNP [dm6]	A	G	1.265e^-4	1	INTRON mwh
2R	17318448	2R_17318448_SNP [dm3] 2R_21430943_SNP [dm6]	A	G	1.265e^-4	1	INTRON Sdc
3R	25834667	3R_25834667_SNP [dm3] 3R_30008945_SNP [dm6]	A	C	1.271e^-4	1	INTRON Nlp & 1 other
2L	8757974	2L_8757974_SNP [dm3] 2L_8757974_SNP [dm6]	G	A	1.286e^-4	1	INTERGENIC
2L	8549898	2L_8549898_SNP [dm3] 2L_8549898_SNP [dm6]	T	A	1.287e^-4	1	INTRON Sema-1a
2L	8263720	2L_8263720_SNP [dm3] 2L_8263720_SNP [dm6]	G	T	1.300e^-4	1	INTRON Btk29A	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3R	12821565	3R_12821565_SNP [dm3] 3R_16995843_SNP [dm6]	G	C	1.314e^-4	1	UPSTREAM CG3534 INTRON CG17556	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	24870725	3R_24870725_SNP [dm3] 3R_29045003_SNP [dm6]	C	A	1.318e^-4	1	SYNONYMOUS_CODING Pkc98E	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15967685	3R_15967685_SNP [dm3] 3R_20141963_SNP [dm6]	G	A	1.324e^-4	1	INTERGENIC
2R	20704605	2R_20704605_SNP [dm3] 2R_24817082_SNP [dm6]	G	A	1.325e^-4	1	INTRON Dll	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	9413558	2L_9413558_SNP [dm3] 2L_9413558_SNP [dm6]	G	C	1.327e^-4	1	INTRON Shawl
2L	9440778	2L_9440778_INS [dm3] 2L_9440778_INS [dm6]	G	GG	1.332e^-4	1	UPSTREAM CG33723 INTRON numb
3L	1216158	3L_1216158_SNP [dm3] 3L_1216158_SNP [dm6]	G	T	1.340e^-4	1	INTRON mwh	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	8758076	2L_8758076_SNP [dm3] 2L_8758076_SNP [dm6]	C	T	1.357e^-4	1	INTERGENIC
2R	12073760	2R_12073760_SNP [dm3] 2R_16186255_SNP [dm6]	G	T	1.363e^-4	1	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5336035	2L_5336035_SNP [dm3] 2L_5336035_SNP [dm6]	G	C	1.377e^-4	1	UTR_5_PRIME fusl INTRON fusl
2R	16088661	2R_16088661_DEL [dm3] 2R_20201156_DEL [dm6]	TTT	T	1.379e^-4	1	INTERGENIC
3R	24179565	3R_24179565_SNP [dm3] 3R_28353843_SNP [dm6]	T	C	1.379e^-4	1	DOWNSTREAM Or98b INTERGENIC
2L	9392405	2L_9392405_DEL [dm3] 2L_9392405_DEL [dm6]	GA	G	1.380e^-4	1	DOWNSTREAM Aldh INTRON Shawl
X	14348362	X_14348362_INS [dm3] X_14454329_INS [dm6]	T	TGTCTAAAT	1.384e^-4	1	INTRON dpr8
2L	758208	2L_758208_SNP [dm3] 2L_758208_SNP [dm6]	A	G	1.391e^-4	1	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13311703	3L_13311703_SNP [dm3] 3L_13318603_SNP [dm6]	T	C	1.394e^-4	1	INTERGENIC
2L	10446958	2L_10446958_SNP [dm3] 2L_10446958_SNP [dm6]	C	T	1.398e^-4	1	UPSTREAM loh INTRON loh
3L	17686743	3L_17686743_SNP [dm3] 3L_17693643_SNP [dm6]	T	A	1.419e^-4	1	INTRON Ccn
X	4109007	X_4109007_SNP [dm3] X_4214974_SNP [dm6]	T	C	1.427e^-4	1	INTERGENIC
3R	21677159	3R_21677159_INS [dm3] 3R_25851437_INS [dm6]	T	TA	1.433e^-4	1	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	8263633	2L_8263633_SNP [dm3] 2L_8263633_SNP [dm6]	C	T	1.435e^-4	1	INTRON Btk29A	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	19344627	2R_19344627_SNP [dm3] 2R_23457104_SNP [dm6]	A	G	1.439e^-4	1	SYNONYMOUS_CODING CG43795 DOWNSTREAM skpF	TF binding site mE1_TFBS_chinmo
3R	10745547	3R_10745547_SNP [dm3] 3R_14919825_SNP [dm6]	G	A	1.440e^-4	1	SYNONYMOUS_CODING Sdr
2L	8267362	2L_8267362_SNP [dm3] 2L_8267362_SNP [dm6]	G	A	1.441e^-4	1	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
X	15720198	X_15720198_SNP [dm3] X_15826165_SNP [dm6]	G	A	1.442e^-4	1	UTR_3_PRIME sd DOWNSTREAM sd	TF binding site mE1_TFBS_kn
3R	27213450	3R_27213450_SNP [dm3] 3R_31387728_SNP [dm6]	A	G	1.442e^-4	1	INTRON CG1607	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	4139539	3R_4139539_SNP [dm3] 3R_8313817_SNP [dm6]	A	G	1.451e^-4	1	SYNONYMOUS_CODING eIF4AIII DOWNSTREAM CG11698 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8611621	3L_8611621_SNP [dm3] 3L_8618521_SNP [dm6]	C	T	1.453e^-4	1	INTRON S-Lap1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18481950	3L_18481950_SNP [dm3] 3L_18488850_SNP [dm6]	T	G	1.454e^-4	1	UTR_5_PRIME AstC-R2	TF binding site mE1_TFBS_cad
3R	12706838	3R_12706838_SNP [dm3] 3R_16881116_SNP [dm6]	A	T	1.455e^-4	1	INTRON iab-8
3L	19069820	3L_19069820_SNP [dm3] 3L_19076720_SNP [dm6]	T	A	1.460e^-4	1	INTRON Mkp3
3R	2306995	3R_2306995_SNP [dm3] 3R_6481273_SNP [dm6]	T	C	1.465e^-4	1	INTRON CG15186
2L	9440782	2L_9440782_SNP [dm3] 2L_9440782_SNP [dm6]	A	G	1.465e^-4	1	UPSTREAM CG33723 INTRON numb
2R	17581200	2R_17581200_SNP [dm3] 2R_21693695_SNP [dm6]	A	T	1.466e^-4	1	DOWNSTREAM Ppcdc & 1 other INTRON CngB	TF binding site mE1_TFBS_cad
2R	1099463	2R_1099463_SNP [dm3] 2R_5211958_SNP [dm6]	C	A	1.467e^-4	1	INTRON Nipped-A	transposable element FlyBase
3R	24411690	3R_24411690_SNP [dm3] 3R_28585968_SNP [dm6]	T	A	1.469e^-4	1	UPSTREAM MRE23 & 1 other INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	16609430	X_16609430_SNP [dm3] X_16715397_SNP [dm6]	A	T	1.487e^-4	1	INTRON CG34325
2L	9439438	2L_9439438_SNP [dm3] 2L_9439438_SNP [dm6]	T	G	1.492e^-4	1	DOWNSTREAM CG33723 INTRON numb
2R	21054786	2R_21054786_SNP [dm3] 2R_25167263_SNP [dm6]	G	A	1.498e^-4	1	UPSTREAM CG34038 INTERGENIC
2R	17580635	2R_17580635_SNP [dm3] 2R_21693130_SNP [dm6]	A	T	1.502e^-4	1	SYNONYMOUS_CODING CngB DOWNSTREAM Ppcdc & 1 other	TF binding site mE1_TFBS_cad
2R	17937679	2R_17937679_SNP [dm3] 2R_22050174_SNP [dm6]	A	T	1.514e^-4	1	INTERGENIC
3R	18917142	3R_18917142_SNP [dm3] 3R_23091420_SNP [dm6]	G	A	1.520e^-4	1	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
3L	18489367	3L_18489367_SNP [dm3] 3L_18496267_SNP [dm6]	A	T	1.525e^-4	1	INTRON AstC-R2
3R	424672	3R_424672_SNP [dm3] 3R_4598950_SNP [dm6]	T	A	1.526e^-4	1	INTRON CR44317	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7168470	2R_7168470_SNP [dm3] 2R_11280965_SNP [dm6]	T	C	1.527e^-4	1	UTR_3_PRIME Vhl & 1 other DOWNSTREAM Vhl
2L	10843807	2L_10843807_SNP [dm3] 2L_10843807_SNP [dm6]	A	T	1.533e^-4	1	SYNONYMOUS_CODING CG17140 UTR_3_PRIME CG17139
3R	12705329	3R_12705329_SNP [dm3] 3R_16879607_SNP [dm6]	C	T	1.551e^-4	1	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	9277690	X_9277690_SNP [dm3] X_9383657_SNP [dm6]	T	A	1.562e^-4	1	INTRON mgl
2L	758157	2L_758157_SNP [dm3] 2L_758157_SNP [dm6]	G	A	1.567e^-4	1	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3
3L	18636967	3L_18636967_SNP [dm3] 3L_18643867_SNP [dm6]	C	G	1.579e^-4	1	INTRON MYPT-75D
3R	19012536	3R_19012536_SNP [dm3] 3R_23186814_SNP [dm6]	G	A	1.591e^-4	1	UTR_3_PRIME cnc
3L	14977009	3L_14977009_DEL [dm3] 3L_14983909_DEL [dm6]	TC	T	1.613e^-4	1	SPLICE_SITE_REGION CG5114 INTRON CG5114	TF binding site mE1_TFBS_sens
2R	17594990	2R_17594990_SNP [dm3] 2R_21707485_SNP [dm6]	T	A	1.616e^-4	1	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8758091	2L_8758091_INS [dm3] 2L_8758091_INS [dm6]	A	AATATG	1.632e^-4	1	INTERGENIC
3R	16980262	3R_16980262_SNP [dm3] 3R_21154540_SNP [dm6]	T	A	1.639e^-4	1	INTRON SNF4Agamma
X	16609443	X_16609443_SNP [dm3] X_16715410_SNP [dm6]	C	A	1.640e^-4	1	INTRON CG34325
2L	8758094	2L_8758094_SNP [dm3] 2L_8758094_SNP [dm6]	T	C	1.646e^-4	1	INTERGENIC
2L	9543730	2L_9543730_SNP [dm3] 2L_9543730_SNP [dm6]	A	C	1.646e^-4	1	UPSTREAM CG13113 DOWNSTREAM Cpr30B INTERGENIC
2L	758185	2L_758185_SNP [dm3] 2L_758185_SNP [dm6]	T	A	1.646e^-4	1	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA
3R	25808666	3R_25808666_SNP [dm3] 3R_29982944_SNP [dm6]	A	G	1.648e^-4	1	UPSTREAM CG7896 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26755621	3R_26755621_SNP [dm3] 3R_30929899_SNP [dm6]	G	A	1.650e^-4	1	SYNONYMOUS_CODING Ptx1 UTR_3_PRIME Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17610240	3L_17610240_SNP [dm3] 3L_17617140_SNP [dm6]	A	T	1.657e^-4	1	INTRON Eip74EF
X	8429469	X_8429469_SNP [dm3] X_8535436_SNP [dm6]	T	A	1.662e^-4	1	INTRON Nrg
3R	20448430	3R_20448430_SNP [dm3] 3R_24622708_SNP [dm6]	C	T	1.664e^-4	1	INTRON mld
2R	16088673	2R_16088673_SNP [dm3] 2R_20201168_SNP [dm6]	T	C	1.664e^-4	1	INTERGENIC
3R	13761964	3R_13761964_SNP [dm3] 3R_17936242_SNP [dm6]	G	A	1.666e^-4	1	INTRON cpo
2L	8267379	2L_8267379_SNP [dm3] 2L_8267379_SNP [dm6]	A	G	1.676e^-4	1	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
3L	5718007	3L_5718007_SNP [dm3] 3L_5724907_SNP [dm6]	G	A	1.686e^-4	1	INTRON sif
3L	9696348	3L_9696348_SNP [dm3] 3L_9703248_SNP [dm6]	C	A	1.692e^-4	1	NON_SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18698453	2R_18698453_SNP [dm3] 2R_22810948_SNP [dm6]	T	C	1.698e^-4	1	INTRON stl
2L	9440785	2L_9440785_SNP [dm3] 2L_9440785_SNP [dm6]	T	C	1.718e^-4	1	UPSTREAM CG33723 INTRON numb
2L	16556116	2L_16556116_SNP [dm3] 2L_16556116_SNP [dm6]	C	T	1.721e^-4	1	INTRON CG42389
2R	17570706	2R_17570706_SNP [dm3] 2R_21683201_SNP [dm6]	C	G	1.749e^-4	1	INTRON CG30263	TF binding site mE1_TFBS_cad
X	6671705	X_6671705_SNP [dm3] X_6777672_SNP [dm6]	T	A	1.750e^-4	1	INTRON shf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2072534	2L_2072534_SNP [dm3] 2L_2072534_SNP [dm6]	G	C	1.750e^-4	1	INTRON dpr3	TF binding site mE1_TFBS_chinmo
2R	6396695	2R_6396695_SNP [dm3] 2R_10509190_SNP [dm6]	G	A	1.751e^-4	1	SYNONYMOUS_CODING lola INTRON lola	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16796684	2R_16796684_SNP [dm3] 2R_20909179_SNP [dm6]	C	T	1.753e^-4	1	UPSTREAM CG9235 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	10644956	2R_10644956_SNP [dm3] 2R_14757451_SNP [dm6]	A	C	1.760e^-4	1	SYNONYMOUS_CODING Trs31 DOWNSTREAM CG12857 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	12345429	3R_12345429_SNP [dm3] 3R_16519707_SNP [dm6]	G	T	1.773e^-4	1	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	10355842	3L_10355842_SNP [dm3] 3L_10362742_SNP [dm6]	G	A	1.773e^-4	1	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16313056	2R_16313056_SNP [dm3] 2R_20425551_SNP [dm6]	A	G	1.778e^-4	1	INTRON CG12484
2L	22107520	2L_22107520_INS [dm3] 2L_22107520_INS [dm6]	T	TAGTTC	1.781e^-4	1	UPSTREAM CG10834 INTERGENIC
3L	9697385	3L_9697385_SNP [dm3] 3L_9704285_SNP [dm6]	G	A	1.786e^-4	1	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1216107	3L_1216107_SNP [dm3] 3L_1216107_SNP [dm6]	A	G	1.790e^-4	1	INTRON mwh	TF binding site BDTNP1_TFBS_prd mE1_TFBS_inv
2L	16717144	2L_16717144_SNP [dm3] 2L_16717144_SNP [dm6]	G	A	1.793e^-4	1	UPSTREAM CG31808 INTRON Cyt-c-d	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23145885	3R_23145885_SNP [dm3] 3R_27320163_SNP [dm6]	C	T	1.794e^-4	1	DOWNSTREAM CR44287 INTRON CG3339
3R	18917168	3R_18917168_DEL [dm3] 3R_23091446_DEL [dm6]	TTTTT	T	1.795e^-4	1	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
2R	21075726	2R_21075726_SNP [dm3] 2R_25188203_SNP [dm6]	T	C	1.798e^-4	1	UTR_5_PRIME CG9380
3R	25366780	3R_25366780_SNP [dm3] 3R_29541058_SNP [dm6]	T	C	1.803e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	13893312	2R_13893312_INS [dm3] 2R_18005807_INS [dm6]	G	GA	1.813e^-4	1	INTRON dpr13 EXON CR44419
2L	12224882	2L_12224882_SNP [dm3] 2L_12224882_SNP [dm6]	A	G	1.819e^-4	1	INTRON aret
3L	10355838	3L_10355838_SNP [dm3] 3L_10362738_SNP [dm6]	T	C	1.822e^-4	1	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26962392	3R_26962392_SNP [dm3] 3R_31136670_SNP [dm6]	T	C	1.829e^-4	1	INTRON Gycbeta100B
2L	16541426	2L_16541426_SNP [dm3] 2L_16541426_SNP [dm6]	A	C	1.836e^-4	1	INTERGENIC
X	2587194	X_2587194_SNP [dm3] X_2693161_SNP [dm6]	G	A	1.836e^-4	1	SYNONYMOUS_CODING CG2650 DOWNSTREAM per	TF binding site mE1_TFBS_chinmo
3L	9655968	3L_9655968_SNP [dm3] 3L_9662868_SNP [dm6]	T	C	1.837e^-4	1	INTRON fry
2R	16336701	2R_16336701_INS [dm3] 2R_20449196_INS [dm6]	T	TCAAGAT	1.846e^-4	1	INTRON CG12484	TF binding site mE1_TFBS_inv
2L	4257751	2L_4257751_SNP [dm3] 2L_4257751_SNP [dm6]	A	G	1.847e^-4	1	SYNONYMOUS_CODING CG15425 UPSTREAM CR45296
2R	16241741	2R_16241741_SNP [dm3] 2R_20354236_SNP [dm6]	G	A	1.866e^-4	1	NON_SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad
3R	19205965	3R_19205965_SNP [dm3] 3R_23380243_SNP [dm6]	T	A	1.888e^-4	1	INTRON CG4393	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18287433	X_18287433_SNP [dm3] X_18393400_SNP [dm6]	C	T	1.889e^-4	1	INTRON CG32549
3L	5312635	3L_5312635_SNP [dm3] 3L_5319535_SNP [dm6]	T	G	1.891e^-4	1	INTERGENIC
3L	19620899	3L_19620899_SNP [dm3] 3L_19627799_SNP [dm6]	A	G	1.893e^-4	1	SYNONYMOUS_CODING wnd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7902182	2L_7902182_SNP [dm3] 2L_7902182_SNP [dm6]	T	C	1.898e^-4	1	INTRON Snoo
3R	14924511	3R_14924511_SNP [dm3] 3R_19098789_SNP [dm6]	T	A	1.926e^-4	1	INTRON CG6040
3L	1358467	3L_1358467_SNP [dm3] 3L_1358467_SNP [dm6]	C	T	1.927e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9413562	2L_9413562_SNP [dm3] 2L_9413562_SNP [dm6]	T	C	1.943e^-4	1	INTRON Shawl
2R	10644697	2R_10644697_SNP [dm3] 2R_14757192_SNP [dm6]	A	C	1.952e^-4	1	UPSTREAM CG10151 DOWNSTREAM CG12857 & 1 other INTRON Trs31	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17583439	2R_17583439_SNP [dm3] 2R_21695934_SNP [dm6]	T	A	1.956e^-4	1	NON_SYNONYMOUS_CODING CngB UTR_5_PRIME CngB	TF binding site mE1_TFBS_cad
2R	10537752	2R_10537752_SNP [dm3] 2R_14650247_SNP [dm6]	T	C	1.986e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2157206	3L_2157206_SNP [dm3] 3L_2157206_SNP [dm6]	C	T	1.987e^-4	1	INTRON CG15822	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2072941	2L_2072941_SNP [dm3] 2L_2072941_SNP [dm6]	A	T	2.001e^-4	1	INTRON dpr3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4511640	3L_4511640_SNP [dm3] 3L_4511640_SNP [dm6]	T	C	2.012e^-4	1	INTRON Tie
3R	7673894	3R_7673894_SNP [dm3] 3R_11848172_SNP [dm6]	C	T	2.017e^-4	1	INTRON CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3357823	3L_3357823_SNP [dm3] 3L_3357823_SNP [dm6]	G	A	2.020e^-4	1	SYNONYMOUS_CODING kst	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	8682410	3L_8682410_SNP [dm3] 3L_8689310_SNP [dm6]	T	C	2.034e^-4	1	INTERGENIC
3L	3359079	3L_3359079_SNP [dm3] 3L_3359079_SNP [dm6]	G	C	2.035e^-4	1	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11366657	X_11366657_SNP [dm3] X_11472624_SNP [dm6]	T	A	2.041e^-4	1	INTRON CG43155
3R	18917160	3R_18917160_DEL [dm3] 3R_23091438_DEL [dm6]	CAA	GT	2.048e^-4	1	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
2L	2068214	2L_2068214_SNP [dm3] 2L_2068214_SNP [dm6]	G	A	2.069e^-4	1	INTRON dpr3	TF binding site mE1_TFBS_chinmo
3R	14699445	3R_14699445_SNP [dm3] 3R_18873723_SNP [dm6]	C	T	2.080e^-4	1	INTERGENIC
3L	9697017	3L_9697017_SNP [dm3] 3L_9703917_SNP [dm6]	T	A	2.084e^-4	1	UPSTREAM CG16711 & 1 other INTERGENIC
2L	15762115	2L_15762115_SNP [dm3] 2L_15762115_SNP [dm6]	A	G	2.093e^-4	1	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12373112	2R_12373112_SNP [dm3] 2R_16485607_SNP [dm6]	A	C	2.094e^-4	1	UPSTREAM CG15712 INTERGENIC
X	16913285	X_16913285_SNP [dm3] X_17019252_SNP [dm6]	A	T	2.097e^-4	1	UPSTREAM CG45002 INTRON CG45002
3R	15977929	3R_15977929_SNP [dm3] 3R_20152207_SNP [dm6]	C	G	2.098e^-4	1	INTERGENIC
2L	10013262	2L_10013262_SNP [dm3] 2L_10013262_SNP [dm6]	C	A	2.137e^-4	1	UTR_3_PRIME CG13131 DOWNSTREAM Trp1
X	10257257	X_10257257_SNP [dm3] X_10363224_SNP [dm6]	A	G	2.143e^-4	1	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19035353	2R_19035353_SNP [dm3] 2R_23147830_SNP [dm6]	A	T	2.160e^-4	1	INTERGENIC
3R	15977941	3R_15977941_SNP [dm3] 3R_20152219_SNP [dm6]	A	C	2.174e^-4	1	INTERGENIC
2R	18329138	2R_18329138_SNP [dm3] 2R_22441633_SNP [dm6]	A	C	2.192e^-4	1	INTERGENIC
3L	1294053	3L_1294053_SNP [dm3] 3L_1294053_SNP [dm6]	G	A	2.200e^-4	1	INTRON CG32333
3R	21678983	3R_21678983_SNP [dm3] 3R_25853261_SNP [dm6]	A	G	2.202e^-4	1	SYNONYMOUS_CODING CG5886	TF binding site mE1_TFBS_HSA
2L	31077	2L_31077_SNP [dm3] 2L_31077_SNP [dm6]	T	A	2.206e^-4	1	NON_SYNONYMOUS_CODING Cda5 INTRON Cda5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1020756	3L_1020756_SNP [dm3] 3L_1020756_SNP [dm6]	C	T	2.212e^-4	1	INTRON trio
2R	16796677	2R_16796677_INS [dm3] 2R_20909172_INS [dm6]	TA	AGT	2.219e^-4	1	UPSTREAM CG9235 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	901008	2R_901008_SNP [dm3] 2R_5013503_SNP [dm6]	A	G	2.233e^-4	1	INTRON Ir41a
3L	13592579	3L_13592579_SNP [dm3] 3L_13599479_SNP [dm6]	G	C	2.233e^-4	1	INTRON bru-3 EXON CR45120
2R	18698286	2R_18698286_SNP [dm3] 2R_22810781_SNP [dm6]	T	A	2.240e^-4	1	INTRON stl
3R	18961636	3R_18961636_INS [dm3] 3R_23135914_INS [dm6]	T	TT	2.242e^-4	1	INTRON hh	regulatory region REDfly_CRMs
2L	13684278	2L_13684278_SNP [dm3] 2L_13684278_SNP [dm6]	C	G	2.243e^-4	1	INTRON CG31814
2R	17346176	2R_17346176_INS [dm3] 2R_21458671_INS [dm6]	A	AA	2.244e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3360960	3L_3360960_SNP [dm3] 3L_3360960_SNP [dm6]	G	A	2.245e^-4	1	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3R	16435799	3R_16435799_SNP [dm3] 3R_20610077_SNP [dm6]	T	C	2.246e^-4	1	SYNONYMOUS_CODING bon
2L	3839571	2L_3839571_SNP [dm3] 2L_3839571_SNP [dm6]	G	C	2.254e^-4	1	DOWNSTREAM slp2 INTERGENIC	regulatory region REDfly_CRMs
2R	19488091	2R_19488091_SNP [dm3] 2R_23600568_SNP [dm6]	A	T	2.257e^-4	1	UPSTREAM CG42560 DOWNSTREAM CG10332 & 1 other INTRON CG42559 & 1 other
3L	14249592	3L_14249592_DEL [dm3] 3L_14256492_DEL [dm6]	CGCTTATTAAT...	C	2.261e^-4	1	INTERGENIC
X	9939638	X_9939638_SNP [dm3] X_10045605_SNP [dm6]	G	A	2.266e^-4	1	DOWNSTREAM Cht6 INTRON Cht6 EXON CR45185 & 1 other
3L	20737478	3L_20737478_SNP [dm3] 3L_20744378_SNP [dm6]	G	C	2.267e^-4	1	UTR_3_PRIME CG13252
3R	13303141	3R_13303141_SNP [dm3] 3R_17477419_SNP [dm6]	G	A	2.273e^-4	1	INTRON Dscam3
3R	14962284	3R_14962284_SNP [dm3] 3R_19136562_SNP [dm6]	A	C	2.277e^-4	1	SYNONYMOUS_CODING Cyp12a4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5485166	X_5485166_SNP [dm3] X_5591133_SNP [dm6]	C	A	2.288e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	5000357	X_5000357_SNP [dm3] X_5106324_SNP [dm6]	G	C	2.292e^-4	1	INTRON rg & 1 other
3L	2462270	3L_2462270_DEL [dm3] 3L_2462270_DEL [dm6]	CGCGAAACTATC...	G	2.298e^-4	1	UPSTREAM CG45186 INTRON CG45186
3L	9696234	3L_9696234_SNP [dm3] 3L_9703134_SNP [dm6]	A	C	2.303e^-4	1	SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14911272	3R_14911272_SNP [dm3] 3R_19085550_SNP [dm6]	G	A	2.304e^-4	1	INTRON cdi
2L	8267387	2L_8267387_SNP [dm3] 2L_8267387_SNP [dm6]	T	G	2.306e^-4	1	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
3L	1216152	3L_1216152_SNP [dm3] 3L_1216152_SNP [dm6]	A	C	2.309e^-4	1	INTRON mwh	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	14895693	3R_14895693_SNP [dm3] 3R_19069971_SNP [dm6]	A	G	2.311e^-4	1	INTRON cdi
2L	5494988	2L_5494988_SNP [dm3] 2L_5494988_SNP [dm6]	C	T	2.320e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15872107	2R_15872107_SNP [dm3] 2R_19984602_SNP [dm6]	G	A	2.330e^-4	1	UTR_3_PRIME CG8654
2L	2672181	2L_2672181_SNP [dm3] 2L_2672181_SNP [dm6]	T	C	2.332e^-4	1	UTR_3_PRIME Gr23a
2R	17160869	2R_17160869_SNP [dm3] 2R_21273364_SNP [dm6]	G	T	2.333e^-4	1	INTRON Rgk3
3R	19249216	3R_19249216_SNP [dm3] 3R_23423494_SNP [dm6]	C	G	2.335e^-4	1	INTRON CG4374	TF binding site mE1_TFBS_HSA
2R	18964531	2R_18964531_SNP [dm3] 2R_23077008_SNP [dm6]	T	C	2.340e^-4	1	SYNONYMOUS_CODING Art7 DOWNSTREAM CG3085	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3L	3277084	3L_3277084_SNP [dm3] 3L_3277084_SNP [dm6]	T	G	2.350e^-4	1	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13605610	2L_13605610_SNP [dm3] 2L_13605610_SNP [dm6]	G	C	2.362e^-4	1	INTRON kuz
X	9939633	X_9939633_INS [dm3] X_10045600_INS [dm6]	T	TTTT	2.364e^-4	1	DOWNSTREAM Cht6 INTRON Cht6 EXON CR45185 & 1 other
3L	12239727	3L_12239727_SNP [dm3] 3L_12246627_SNP [dm6]	G	T	2.380e^-4	1	UPSTREAM CR43991 INTRON app
3L	5717990	3L_5717990_SNP [dm3] 3L_5724890_SNP [dm6]	A	G	2.382e^-4	1	INTRON sif
3R	26962405	3R_26962405_SNP [dm3] 3R_31136683_SNP [dm6]	G	C	2.388e^-4	1	INTRON Gycbeta100B
3R	17658539	3R_17658539_SNP [dm3] 3R_21832817_SNP [dm6]	A	C	2.411e^-4	1	NON_SYNONYMOUS_CODING Gr93a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	18917147	3R_18917147_SNP [dm3] 3R_23091425_SNP [dm6]	T	A	2.411e^-4	1	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
2L	14570638	2L_14570638_SNP [dm3] 2L_14570638_SNP [dm6]	G	C	2.420e^-4	1	INTERGENIC
3L	14249578	3L_14249578_SNP [dm3] 3L_14256478_SNP [dm6]	G	T	2.430e^-4	1	INTERGENIC
3L	14249579	3L_14249579_SNP [dm3] 3L_14256479_SNP [dm6]	A	T	2.430e^-4	1	INTERGENIC
3L	14249581	3L_14249581_SNP [dm3] 3L_14256481_SNP [dm6]	T	C	2.430e^-4	1	INTERGENIC
3R	14924513	3R_14924513_SNP [dm3] 3R_19098791_SNP [dm6]	T	C	2.460e^-4	1	INTRON CG6040
2L	7445357	2L_7445357_SNP [dm3] 2L_7445357_SNP [dm6]	A	T	2.465e^-4	1	UTR_3_PRIME CG5973 & 1 other DOWNSTREAM CG5973
3R	9831330	3R_9831330_SNP [dm3] 3R_14005608_SNP [dm6]	G	T	2.469e^-4	1	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	20103281	3R_20103281_SNP [dm3] 3R_24277559_SNP [dm6]	C	T	2.484e^-4	1	SYNONYMOUS_CODING Orct	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	2068780	2L_2068780_SNP [dm3] 2L_2068780_SNP [dm6]	A	G	2.491e^-4	1	INTRON dpr3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9305222	2R_9305222_SNP [dm3] 2R_13417717_SNP [dm6]	C	T	2.499e^-4	1	SYNONYMOUS_CODING CG42321 DOWNSTREAM CG42321 INTRON CG42321
2R	10705458	2R_10705458_SNP [dm3] 2R_14817953_SNP [dm6]	A	C	2.503e^-4	1	UTR_3_PRIME CG10202	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12345430	3R_12345430_SNP [dm3] 3R_16519708_SNP [dm6]	G	C	2.504e^-4	1	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	12822916	2R_12822916_SNP [dm3] 2R_16935411_SNP [dm6]	G	A	2.509e^-4	1	INTRON Pkc53E
3L	14249604	3L_14249604_SNP [dm3] 3L_14256504_SNP [dm6]	T	A	2.511e^-4	1	INTERGENIC
3R	15973668	3R_15973668_SNP [dm3] 3R_20147946_SNP [dm6]	A	G	2.518e^-4	1	INTERGENIC
3R	15973674	3R_15973674_SNP [dm3] 3R_20147952_SNP [dm6]	T	G	2.518e^-4	1	INTERGENIC
3L	10679775	3L_10679775_SNP [dm3] 3L_10686675_SNP [dm6]	T	C	2.520e^-4	1	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4984266	X_4984266_INS [dm3] X_5090233_INS [dm6]	A	AA	2.539e^-4	1	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11469482	3L_11469482_SNP [dm3] 3L_11476382_SNP [dm6]	G	C	2.540e^-4	1	DOWNSTREAM Vha16-2 INTERGENIC
2L	8267382	2L_8267382_INS [dm3] 2L_8267382_INS [dm6]	A	ATGC	2.552e^-4	1	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
2L	13114560	2L_13114560_SNP [dm3] 2L_13114560_SNP [dm6]	C	A	2.554e^-4	1	INTERGENIC
X	10052250	X_10052250_SNP [dm3] X_10158217_SNP [dm6]	C	G	2.558e^-4	1	UPSTREAM CG43902 INTRON CR44894
2R	17505256	2R_17505256_SNP [dm3] 2R_21617751_SNP [dm6]	T	C	2.560e^-4	1	SYNONYMOUS_CODING clt UPSTREAM CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	15872106	2R_15872106_SNP [dm3] 2R_19984601_SNP [dm6]	A	G	2.560e^-4	1	UTR_3_PRIME CG8654
X	14728075	X_14728075_SNP [dm3] X_14834042_SNP [dm6]	A	T	2.563e^-4	1	SYNONYMOUS_CODING CG14411	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12222860	3R_12222860_SNP [dm3] 3R_16397138_SNP [dm6]	A	C	2.568e^-4	1	INTRON ss	regulatory region REDfly_CRMs
3R	10601332	3R_10601332_SNP [dm3] 3R_14775610_SNP [dm6]	T	G	2.570e^-4	1	INTRON jvl
2L	171443	2L_171443_SNP [dm3] 2L_171443_SNP [dm6]	C	G	2.570e^-4	1	INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	4157655	3R_4157655_SNP [dm3] 3R_8331933_SNP [dm6]	C	A	2.575e^-4	1	INTRON Poxm
3R	12153829	3R_12153829_SNP [dm3] 3R_16328107_SNP [dm6]	A	C	2.578e^-4	1	SYNONYMOUS_CODING CG17930 DOWNSTREAM CG17929 INTRON Sulf1
3L	1330658	3L_1330658_SNP [dm3] 3L_1330658_SNP [dm6]	T	C	2.580e^-4	1	INTRON mtacp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9514716	3L_9514716_SNP [dm3] 3L_9521616_SNP [dm6]	G	C	2.594e^-4	1	INTRON CG33700
2L	17253815	2L_17253815_SNP [dm3] 2L_17253815_SNP [dm6]	G	A	2.598e^-4	1	INTRON beat-IIIc
3R	15973667	3R_15973667_SNP [dm3] 3R_20147945_SNP [dm6]	G	A	2.608e^-4	1	INTERGENIC
3L	9698288	3L_9698288_SNP [dm3] 3L_9705188_SNP [dm6]	C	T	2.609e^-4	1	NON_SYNONYMOUS_CODING CG16711	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13762217	3L_13762217_SNP [dm3] 3L_13769117_SNP [dm6]	A	C	2.628e^-4	1	INTRON bru-3
3R	25823127	3R_25823127_SNP [dm3] 3R_29997405_SNP [dm6]	G	A	2.632e^-4	1	UPSTREAM CG11504 DOWNSTREAM Sas-6 INTRON CG15525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17937619	2R_17937619_SNP [dm3] 2R_22050114_SNP [dm6]	A	G	2.642e^-4	1	INTERGENIC
3L	2462344	3L_2462344_SNP [dm3] 3L_2462344_SNP [dm6]	A	G	2.642e^-4	1	UPSTREAM CG45186 INTRON CG45186
3R	20421616	3R_20421616_SNP [dm3] 3R_24595894_SNP [dm6]	C	G	2.649e^-4	1	INTRON mld	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8758079	2L_8758079_SNP [dm3] 2L_8758079_SNP [dm6]	A	T	2.654e^-4	1	INTERGENIC
3L	14249609	3L_14249609_INS [dm3] 3L_14256509_INS [dm6]	G	GC	2.655e^-4	1	INTERGENIC
3R	25819197	3R_25819197_SNP [dm3] 3R_29993475_SNP [dm6]	G	T	2.667e^-4	1	UTR_3_PRIME CG7903 UPSTREAM Acph-1	TF binding site mE1_TFBS_cad
3R	13303144	3R_13303144_SNP [dm3] 3R_17477422_SNP [dm6]	T	C	2.681e^-4	1	INTRON Dscam3
3R	26962667	3R_26962667_SNP [dm3] 3R_31136945_SNP [dm6]	T	C	2.715e^-4	1	INTRON Gycbeta100B
3R	17688919	3R_17688919_SNP [dm3] 3R_21863197_SNP [dm6]	T	A	2.716e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6592881	X_6592881_SNP [dm3] X_6698848_SNP [dm6]	A	T	2.716e^-4	1	UPSTREAM CG14440 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13372851	3R_13372851_SNP [dm3] 3R_17547129_SNP [dm6]	C	G	2.730e^-4	1	UPSTREAM Prx3 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9514724	3L_9514724_SNP [dm3] 3L_9521624_SNP [dm6]	C	T	2.738e^-4	1	INTRON CG33700
3R	25366785	3R_25366785_SNP [dm3] 3R_29541063_SNP [dm6]	T	A	2.740e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	4881977	3L_4881977_SNP [dm3] 3L_4881977_SNP [dm6]	C	G	2.741e^-4	1	INTRON CG17150
2R	11802248	2R_11802248_SNP [dm3] 2R_15914743_SNP [dm6]	A	C	2.742e^-4	1	INTRON sli
X	10593374	X_10593374_SNP [dm3] X_10699341_SNP [dm6]	C	T	2.743e^-4	1	SYNONYMOUS_CODING X11Lbeta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18670966	2R_18670966_SNP [dm3] 2R_22783461_SNP [dm6]	C	T	2.751e^-4	1	UPSTREAM CG30270 INTRON CG42260
3L	15147363	3L_15147363_SNP [dm3] 3L_15154263_SNP [dm6]	G	A	2.760e^-4	1	UTR_3_PRIME FucTA & 1 other
2R	18195060	2R_18195060_INS [dm3] 2R_22307555_INS [dm6]	A	ATA	2.771e^-4	1	INTRON wdp
3L	4447212	3L_4447212_SNP [dm3] 3L_4447212_SNP [dm6]	C	T	2.771e^-4	1	SYNONYMOUS_CODING CG12607 UPSTREAM CR45739
2L	13747903	2L_13747903_SNP [dm3] 2L_13747903_SNP [dm6]	C	T	2.783e^-4	1	UPSTREAM mir-1002 & 1 other INTRON CR44846 & 1 other
2R	12934071	2R_12934071_SNP [dm3] 2R_17046566_SNP [dm6]	G	A	2.787e^-4	1	UTR_3_PRIME CG9640 UPSTREAM CG9642
3L	1014793	3L_1014793_SNP [dm3] 3L_1014793_SNP [dm6]	C	T	2.788e^-4	1	INTRON trio
X	6686778	X_6686778_DEL [dm3] X_6792745_DEL [dm6]	GG	G	2.810e^-4	1	INTRON C3G
X	7554431	X_7554431_INS [dm3] X_7660398_INS [dm6]	T	TT	2.830e^-4	1	SPLICE_SITE_REGION ct INTRON ct
X	9277721	X_9277721_SNP [dm3] X_9383688_SNP [dm6]	A	C	2.846e^-4	1	INTRON mgl
2L	13213141	2L_13213141_SNP [dm3] 2L_13213141_SNP [dm6]	T	C	2.849e^-4	1	NON_SYNONYMOUS_CODING kek4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3276901	3L_3276901_SNP [dm3] 3L_3276901_SNP [dm6]	A	G	2.853e^-4	1	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2445295	3L_2445295_SNP [dm3] 3L_2445295_SNP [dm6]	C	T	2.858e^-4	1	SYNONYMOUS_CODING CG45186	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3286607	3L_3286607_SNP [dm3] 3L_3286607_SNP [dm6]	T	A	2.863e^-4	1	INTRON CG12017
3L	19621231	3L_19621231_SNP [dm3] 3L_19628131_SNP [dm6]	G	A	2.877e^-4	1	INTRON wnd
2R	17504947	2R_17504947_SNP [dm3] 2R_21617442_SNP [dm6]	T	C	2.885e^-4	1	SYNONYMOUS_CODING clt UPSTREAM CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	11230176	3R_11230176_SNP [dm3] 3R_15404454_SNP [dm6]	A	C	2.887e^-4	1	INTRON CG6125
X	10977104	X_10977104_SNP [dm3] X_11083071_SNP [dm6]	T	C	2.895e^-4	1	INTRON sev
2L	2666545	2L_2666545_SNP [dm3] 2L_2666545_SNP [dm6]	A	G	2.897e^-4	1	DOWNSTREAM CG9879 INTERGENIC
2L	3420949	2L_3420949_SNP [dm3] 2L_3420949_SNP [dm6]	A	G	2.900e^-4	1	INTRON pgant2
2L	10665030	2L_10665030_SNP [dm3] 2L_10665030_SNP [dm6]	T	A	2.901e^-4	1	INTRON CG31871
X	13878311	X_13878311_SNP [dm3] X_13984278_SNP [dm6]	A	G	2.915e^-4	1	INTRON mamo
X	10977160	X_10977160_SNP [dm3] X_11083127_SNP [dm6]	C	G	2.918e^-4	1	INTRON sev
2R	15260960	2R_15260960_SNP [dm3] 2R_19373455_SNP [dm6]	A	T	2.934e^-4	1	UPSTREAM CG9416 INTRON CG9416	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18023727	2R_18023727_INS [dm3] 2R_22136222_INS [dm6]	T	TATAT	2.942e^-4	1	UPSTREAM a INTERGENIC
3R	18917143	3R_18917143_SNP [dm3] 3R_23091421_SNP [dm6]	G	A	2.947e^-4	1	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
X	15401405	X_15401405_SNP [dm3] X_15507372_SNP [dm6]	A	C	2.948e^-4	1	UPSTREAM mir-283 INTRON Gmap	TF binding site mE1_TFBS_HSA
2R	6276764	2R_6276764_SNP [dm3] 2R_10389259_SNP [dm6]	A	T	2.951e^-4	1	INTRON CG42732
2L	3874025	2L_3874025_SNP [dm3] 2L_3874025_SNP [dm6]	T	A	2.955e^-4	1	SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_chinmo
3R	15977932	3R_15977932_SNP [dm3] 3R_20152210_SNP [dm6]	C	T	2.957e^-4	1	INTERGENIC
2L	7898585	2L_7898585_DEL [dm3] 2L_7898585_DEL [dm6]	AGCTCGAA	A	2.958e^-4	1	INTRON Snoo
2L	8255356	2L_8255356_SNP [dm3] 2L_8255356_SNP [dm6]	G	A	2.969e^-4	1	INTRON CG8086
2R	18517838	2R_18517838_SNP [dm3] 2R_22630333_SNP [dm6]	C	T	2.979e^-4	1	SYNONYMOUS_CODING CG33143 INTRON CG33143	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15977174	3R_15977174_SNP [dm3] 3R_20151452_SNP [dm6]	T	A	2.985e^-4	1	INTERGENIC
3L	6445621	3L_6445621_SNP [dm3] 3L_6452521_SNP [dm6]	G	C	2.987e^-4	1	INTRON CG42747
2R	10644580	2R_10644580_SNP [dm3] 2R_14757075_SNP [dm6]	G	T	2.992e^-4	1	UTR_3_PRIME Trs31 UPSTREAM CG10151 DOWNSTREAM CG12857 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10285332	X_10285332_INS [dm3] X_10391299_INS [dm6]	C	CCTTCAC	2.994e^-4	1	INTRON flw
3L	9696270	3L_9696270_SNP [dm3] 3L_9703170_SNP [dm6]	A	G	2.996e^-4	1	SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8758058	2L_8758058_DEL [dm3] 2L_8758058_DEL [dm6]	AA	T	3.006e^-4	1	INTERGENIC
3R	12904930	3R_12904930_SNP [dm3] 3R_17079208_SNP [dm6]	A	G	3.007e^-4	1	INTRON Keap1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Trl mE1_TFBS_zfh1
3R	10693579	3R_10693579_SNP [dm3] 3R_14867857_SNP [dm6]	G	A	3.008e^-4	1	INTRON btsz
2R	1097873	2R_1097873_SNP [dm3] 2R_5210368_SNP [dm6]	T	A	3.015e^-4	1	INTRON Nipped-A
2L	5199873	2L_5199873_SNP [dm3] 2L_5199873_SNP [dm6]	T	G	3.018e^-4	1	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13818632	3L_13818632_SNP [dm3] 3L_13825532_SNP [dm6]	G	A	3.018e^-4	1	INTERGENIC
2R	11511131	2R_11511131_SNP [dm3] 2R_15623626_SNP [dm6]	C	A	3.019e^-4	1	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3L	3359313	3L_3359313_SNP [dm3] 3L_3359313_SNP [dm6]	C	A	3.023e^-4	1	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24819762	3R_24819762_SNP [dm3] 3R_28994040_SNP [dm6]	C	T	3.025e^-4	1	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8758052	2L_8758052_SNP [dm3] 2L_8758052_SNP [dm6]	C	T	3.026e^-4	1	INTERGENIC
3L	2156435	3L_2156435_SNP [dm3] 3L_2156435_SNP [dm6]	T	C	3.034e^-4	1	INTRON CG15822	TF binding site mE1_TFBS_cad
2R	12000040	2R_12000040_SNP [dm3] 2R_16112535_SNP [dm6]	G	A	3.037e^-4	1	SPLICE_SITE_REGION Asph INTRON Asph
2R	12000079	2R_12000079_SNP [dm3] 2R_16112574_SNP [dm6]	T	G	3.037e^-4	1	INTRON Asph
2L	13684272	2L_13684272_SNP [dm3] 2L_13684272_SNP [dm6]	G	A	3.038e^-4	1	INTRON CG31814
3L	1164912	3L_1164912_DEL [dm3] 3L_1164912_DEL [dm6]	CC	C	3.041e^-4	1	INTRON bab2	regulatory region REDfly_CRMs
3L	9699293	3L_9699293_SNP [dm3] 3L_9706193_SNP [dm6]	G	A	3.046e^-4	1	NON_SYNONYMOUS_CODING CG16711	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19710214	3R_19710214_SNP [dm3] 3R_23884492_SNP [dm6]	C	A	3.053e^-4	1	INTRON Pli
3L	14763426	3L_14763426_SNP [dm3] 3L_14770326_SNP [dm6]	A	G	3.054e^-4	1	SYNONYMOUS_CODING mop
3L	5371736	3L_5371736_SNP [dm3] 3L_5378636_SNP [dm6]	C	T	3.056e^-4	1	DOWNSTREAM Ir64a & 1 other INTERGENIC
3R	24193223	3R_24193223_SNP [dm3] 3R_28367501_SNP [dm6]	T	C	3.078e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	222423	2L_222423_SNP [dm3] 2L_222423_SNP [dm6]	G	T	3.090e^-4	1	UPSTREAM kis INTRON kis	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	16803460	2R_16803460_SNP [dm3] 2R_20915955_SNP [dm6]	T	C	3.092e^-4	1	UPSTREAM Rx INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Trl
2L	5301985	2L_5301985_SNP [dm3] 2L_5301985_SNP [dm6]	C	A	3.111e^-4	1	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	7586743	2L_7586743_DEL [dm3] 2L_7586743_DEL [dm6]	GG	G	3.113e^-4	1	INTERGENIC
2R	3834019	2R_3834019_SNP [dm3] 2R_7946514_SNP [dm6]	C	T	3.113e^-4	1	SYNONYMOUS_CODING CG34431 INTRON CG14764
3R	23498538	3R_23498538_SNP [dm3] 3R_27672816_SNP [dm6]	G	A	3.123e^-4	1	INTRON unc80	TF binding site mE1_TFBS_chinmo
3R	25045403	3R_25045403_INS [dm3] 3R_29219681_INS [dm6]	T	TTT	3.128e^-4	1	UPSTREAM Ef1gamma DOWNSTREAM CR31044 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	466135	3R_466135_SNP [dm3] 3R_4640413_SNP [dm6]	C	A	3.128e^-4	1	INTRON CG9775	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19616036	3L_19616036_SNP [dm3] 3L_19622936_SNP [dm6]	T	C	3.129e^-4	1	SYNONYMOUS_CODING ms_3_76Cc
3R	21381358	3R_21381358_SNP [dm3] 3R_25555636_SNP [dm6]	C	A	3.133e^-4	1	INTRON msi
2R	17578656	2R_17578656_SNP [dm3] 2R_21691151_SNP [dm6]	A	G	3.135e^-4	1	UPSTREAM CG42496 & 3 others DOWNSTREAM CG10307 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17678399	2R_17678399_SNP [dm3] 2R_21790894_SNP [dm6]	A	G	3.143e^-4	1	SYNONYMOUS_CODING lox2
3L	4433681	3L_4433681_SNP [dm3] 3L_4433681_SNP [dm6]	G	T	3.145e^-4	1	SYNONYMOUS_CODING nAChRbeta1
2R	18698226	2R_18698226_SNP [dm3] 2R_22810721_SNP [dm6]	T	C	3.147e^-4	1	INTRON stl
2L	14409897	2L_14409897_SNP [dm3] 2L_14409897_SNP [dm6]	C	T	3.148e^-4	1	UPSTREAM elB EXON CR44733	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
X	15129418	X_15129418_SNP [dm3] X_15235385_SNP [dm6]	A	T	3.152e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	12557101	3R_12557101_SNP [dm3] 3R_16731379_SNP [dm6]	T	C	3.157e^-4	1	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18321092	2R_18321092_SNP [dm3] 2R_22433587_SNP [dm6]	G	C	3.158e^-4	1	INTERGENIC
3L	1014795	3L_1014795_SNP [dm3] 3L_1014795_SNP [dm6]	C	G	3.177e^-4	1	INTRON trio
2L	10840020	2L_10840020_SNP [dm3] 2L_10840020_SNP [dm6]	G	A	3.185e^-4	1	DOWNSTREAM mir-4987 INTRON CG6700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	16088671	2R_16088671_SNP [dm3] 2R_20201166_SNP [dm6]	C	A	3.187e^-4	1	INTERGENIC
3R	15973730	3R_15973730_SNP [dm3] 3R_20148008_SNP [dm6]	T	C	3.194e^-4	1	INTERGENIC
X	6477193	X_6477193_SNP [dm3] X_6583160_SNP [dm6]	T	C	3.196e^-4	1	SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	12789884	2L_12789884_SNP [dm3] 2L_12789884_SNP [dm6]	G	T	3.208e^-4	1	INTERGENIC
2R	19511928	2R_19511928_SNP [dm3] 2R_23624405_SNP [dm6]	A	C	3.209e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15919463	3R_15919463_SNP [dm3] 3R_20093741_SNP [dm6]	C	G	3.213e^-4	1	INTERGENIC
2L	9279998	2L_9279998_SNP [dm3] 2L_9279998_SNP [dm6]	G	T	3.214e^-4	1	INTRON Ggamma30A
2R	14653691	2R_14653691_SNP [dm3] 2R_18766186_SNP [dm6]	A	C	3.226e^-4	1	UPSTREAM Mctp INTRON Mctp
X	18829000	X_18829000_SNP [dm3] X_18934967_SNP [dm6]	C	G	3.237e^-4	1	INTRON CG43759
2R	17314360	2R_17314360_SNP [dm3] 2R_21426855_SNP [dm6]	A	T	3.256e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4108478	X_4108478_SNP [dm3] X_4214445_SNP [dm6]	G	A	3.257e^-4	1	INTERGENIC
3L	6364684	3L_6364684_SNP [dm3] 3L_6371584_SNP [dm6]	G	A	3.266e^-4	1	UPSTREAM CR45419 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2462294	3L_2462294_SNP [dm3] 3L_2462294_SNP [dm6]	T	G	3.291e^-4	1	UPSTREAM CG45186 INTRON CG45186
3L	7843590	3L_7843590_SNP [dm3] 3L_7850490_SNP [dm6]	T	C	3.307e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
2R	14944406	2R_14944406_SNP [dm3] 2R_19056901_SNP [dm6]	G	A	3.310e^-4	1	UPSTREAM CG15116 INTERGENIC
3L	9663709	3L_9663709_SNP [dm3] 3L_9670609_SNP [dm6]	G	A	3.316e^-4	1	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
3R	11857221	3R_11857221_SNP [dm3] 3R_16031499_SNP [dm6]	G	T	3.318e^-4	1	INTRON pnr
2L	7782075	2L_7782075_SNP [dm3] 2L_7782075_SNP [dm6]	G	A	3.325e^-4	1	SYNONYMOUS_CODING CG7164 UPSTREAM CG7154 DOWNSTREAM Uro	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7569396	2L_7569396_SNP [dm3] 2L_7569396_SNP [dm6]	T	C	3.331e^-4	1	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1326953	3L_1326953_SNP [dm3] 3L_1326953_SNP [dm6]	A	T	3.341e^-4	1	NON_SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	9696781	3L_9696781_SNP [dm3] 3L_9703681_SNP [dm6]	A	T	3.343e^-4	1	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18481371	3L_18481371_SNP [dm3] 3L_18488271_SNP [dm6]	G	A	3.360e^-4	1	SYNONYMOUS_CODING AstC-R2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18796304	2R_18796304_SNP [dm3] 2R_22908781_SNP [dm6]	G	T	3.360e^-4	1	INTRON nahoda
2L	12238565	2L_12238565_SNP [dm3] 2L_12238565_SNP [dm6]	T	C	3.363e^-4	1	INTRON aret	TF binding site mE1_TFBS_HSA
2L	3396732	2L_3396732_SNP [dm3] 2L_3396732_SNP [dm6]	C	T	3.367e^-4	1	DOWNSTREAM CR44792 INTERGENIC
2L	18640756	2L_18640756_SNP [dm3] 2L_18640756_SNP [dm6]	A	G	3.379e^-4	1	INTRON MESR3
2L	15003702	2L_15003702_SNP [dm3] 2L_15003702_SNP [dm6]	T	C	3.388e^-4	1	INTERGENIC
X	21380976	X_21380976_DEL [dm3] X_21509949_DEL [dm6]	TTATATATGT	T	3.388e^-4	1	INTRON CR45082
X	9277711	X_9277711_INS [dm3] X_9383678_INS [dm6]	A	AT	3.388e^-4	1	INTRON mgl
X	9277715	X_9277715_SNP [dm3] X_9383682_SNP [dm6]	C	T	3.388e^-4	1	INTRON mgl
X	9277717	X_9277717_MNP [dm3] X_9383684_MNP [dm6]	AGC	TTG	3.388e^-4	1	INTRON mgl
3L	10907539	3L_10907539_SNP [dm3] 3L_10914439_SNP [dm6]	C	A	3.402e^-4	1	INTERGENIC
3L	4487581	3L_4487581_SNP [dm3] 3L_4487581_SNP [dm6]	T	C	3.418e^-4	1	SPLICE_SITE_REGION CG13722 SYNONYMOUS_CODING CG13722
3L	9695928	3L_9695928_SNP [dm3] 3L_9702828_SNP [dm6]	A	C	3.430e^-4	1	NON_SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14334523	X_14334523_SNP [dm3] X_14440490_SNP [dm6]	T	C	3.431e^-4	1	INTRON dpr8
3R	26516260	3R_26516260_DEL [dm3] 3R_30690538_DEL [dm6]	GG	G	3.438e^-4	1	UPSTREAM Spn100A INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12264030	2L_12264030_SNP [dm3] 2L_12264030_SNP [dm6]	C	T	3.440e^-4	1	INTRON aret
2L	9373364	2L_9373364_SNP [dm3] 2L_9373364_SNP [dm6]	A	G	3.441e^-4	1	SYNONYMOUS_CODING Shawl EXON CR43865	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18128091	3L_18128091_SNP [dm3] 3L_18134991_SNP [dm6]	A	G	3.445e^-4	1	DOWNSTREAM CR44669 INTERGENIC
X	14348433	X_14348433_SNP [dm3] X_14454400_SNP [dm6]	G	A	3.447e^-4	1	INTRON dpr8
3L	7956865	3L_7956865_SNP [dm3] 3L_7963765_SNP [dm6]	C	T	3.452e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17039962	2L_17039962_SNP [dm3] 2L_17039962_SNP [dm6]	C	G	3.454e^-4	1	INTERGENIC
3L	16933613	3L_16933613_SNP [dm3] 3L_16940513_SNP [dm6]	T	A	3.476e^-4	1	SYNONYMOUS_CODING Cpr73D	TF binding site mE1_TFBS_chinmo
2L	9411293	2L_9411293_SNP [dm3] 2L_9411293_SNP [dm6]	C	T	3.481e^-4	1	INTRON Shawl
2L	9323979	2L_9323979_SNP [dm3] 2L_9323979_SNP [dm6]	C	G	3.486e^-4	1	INTERGENIC
3L	13916181	3L_13916181_SNP [dm3] 3L_13923081_SNP [dm6]	T	G	3.489e^-4	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	18494985	3L_18494985_SNP [dm3] 3L_18501885_SNP [dm6]	G	A	3.492e^-4	1	INTRON AstC-R2
3R	7008690	3R_7008690_SNP [dm3] 3R_11182968_SNP [dm6]	G	A	3.503e^-4	1	INTERGENIC
2L	6694639	2L_6694639_SNP [dm3] 2L_6694639_SNP [dm6]	A	G	3.512e^-4	1	INTRON Tsp
3L	14675712	3L_14675712_SNP [dm3] 3L_14682612_SNP [dm6]	C	A	3.516e^-4	1	INTRON ome
2R	6397822	2R_6397822_SNP [dm3] 2R_10510317_SNP [dm6]	G	T	3.523e^-4	1	DOWNSTREAM lola INTRON lola
X	5606984	X_5606984_SNP [dm3] X_5712951_SNP [dm6]	C	G	3.530e^-4	1	INTRON CG33080
X	5025824	X_5025824_SNP [dm3] X_5131791_SNP [dm6]	A	G	3.534e^-4	1	UPSTREAM Rpn13R INTRON rg & 1 other
2R	17581744	2R_17581744_SNP [dm3] 2R_21694239_SNP [dm6]	A	G	3.554e^-4	1	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
X	7502993	X_7502993_INS [dm3] X_7608960_INS [dm6]	A	AA	3.560e^-4	1	UPSTREAM ct INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	15082088	3L_15082088_SNP [dm3] 3L_15088988_SNP [dm6]	A	G	3.560e^-4	1	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	6746472	3R_6746472_SNP [dm3] 3R_10920750_SNP [dm6]	T	C	3.566e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25818024	3R_25818024_SNP [dm3] 3R_29992302_SNP [dm6]	A	G	3.566e^-4	1	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9514742	3L_9514742_SNP [dm3] 3L_9521642_SNP [dm6]	A	T	3.575e^-4	1	INTRON CG33700
3R	11644031	3R_11644031_SNP [dm3] 3R_15818309_SNP [dm6]	G	A	3.577e^-4	1	INTRON alpha-Man-IIb
3L	13960424	3L_13960424_SNP [dm3] 3L_13967324_SNP [dm6]	A	G	3.580e^-4	1	NON_SYNONYMOUS_CODING Nxf3 INTRON ssp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17029699	2L_17029699_SNP [dm3] 2L_17029699_SNP [dm6]	G	C	3.591e^-4	1	INTERGENIC
2R	17583436	2R_17583436_SNP [dm3] 2R_21695931_SNP [dm6]	G	C	3.599e^-4	1	SYNONYMOUS_CODING CngB UTR_5_PRIME CngB	TF binding site mE1_TFBS_cad
3R	18917134	3R_18917134_SNP [dm3] 3R_23091412_SNP [dm6]	C	T	3.626e^-4	1	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
X	14334525	X_14334525_SNP [dm3] X_14440492_SNP [dm6]	T	A	3.628e^-4	1	INTRON dpr8
2R	8950205	2R_8950205_DEL [dm3] 2R_13062700_DEL [dm6]	GAGAG	T	3.638e^-4	1	INTRON Drl-2
3L	8640836	3L_8640836_SNP [dm3] 3L_8647736_SNP [dm6]	C	T	3.648e^-4	1	SYNONYMOUS_CODING Arr2 UPSTREAM CG13305 INTRON Pex7	TF binding site mE1_TFBS_sens
2R	1207337	2R_1207337_SNP [dm3] 2R_5319832_SNP [dm6]	T	C	3.654e^-4	1	INTRON sxc	transposable element FlyBase
3L	9566633	3L_9566633_SNP [dm3] 3L_9573533_SNP [dm6]	A	C	3.654e^-4	1	INTRON CG42673
2R	10013306	2R_10013306_SNP [dm3] 2R_14125801_SNP [dm6]	T	A	3.664e^-4	1	INTRON Prosap
3R	19249339	3R_19249339_SNP [dm3] 3R_23423617_SNP [dm6]	G	A	3.679e^-4	1	INTRON CG4374
2L	7586068	2L_7586068_SNP [dm3] 2L_7586068_SNP [dm6]	G	A	3.681e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18514502	2R_18514502_SNP [dm3] 2R_22626997_SNP [dm6]	A	T	3.694e^-4	1	INTRON CG33143
2R	18702426	2R_18702426_SNP [dm3] 2R_22814921_SNP [dm6]	A	T	3.702e^-4	1	INTRON stl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	25237085	3R_25237085_SNP [dm3] 3R_29411363_SNP [dm6]	G	A	3.706e^-4	1	INTRON Ptp99A
X	4108468	X_4108468_SNP [dm3] X_4214435_SNP [dm6]	G	T	3.707e^-4	1	INTERGENIC
3L	5193337	3L_5193337_DEL [dm3] 3L_5200237_DEL [dm6]	TT	T	3.732e^-4	1	INTRON shep
2R	10707493	2R_10707493_SNP [dm3] 2R_14819988_SNP [dm6]	A	G	3.749e^-4	1	UPSTREAM CG10202 INTERGENIC
2L	16519844	2L_16519844_SNP [dm3] 2L_16519844_SNP [dm6]	T	C	3.757e^-4	1	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	12038056	3R_12038056_SNP [dm3] 3R_16212334_SNP [dm6]	G	A	3.761e^-4	1	INTERGENIC
2R	15051426	2R_15051426_SNP [dm3] 2R_19163921_SNP [dm6]	T	C	3.762e^-4	1	UPSTREAM CG10737 DOWNSTREAM ena INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7148906	2L_7148906_SNP [dm3] 2L_7148906_SNP [dm6]	A	T	3.762e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7681965	2R_7681965_SNP [dm3] 2R_11794460_SNP [dm6]	C	T	3.768e^-4	1	INTRON ths	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	11185901	3L_11185901_SNP [dm3] 3L_11192801_SNP [dm6]	G	A	3.772e^-4	1	INTRON GlcAT-P
X	19180324	X_19180324_SNP [dm3] X_19286291_SNP [dm6]	C	T	3.793e^-4	1	INTRON CG8034	TF binding site mE1_TFBS_inv
2R	17581888	2R_17581888_SNP [dm3] 2R_21694383_SNP [dm6]	T	C	3.794e^-4	1	INTRON CngB	TF binding site mE1_TFBS_cad
2L	755537	2L_755537_DEL [dm3] 2L_755537_DEL [dm6]	ATTTATTTGCCTGGC...	A	3.799e^-4	1	INTRON GABA-B-R3
2L	12361131	2L_12361131_SNP [dm3] 2L_12361131_SNP [dm6]	T	A	3.803e^-4	1	INTRON bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10788076	3R_10788076_SNP [dm3] 3R_14962354_SNP [dm6]	C	T	3.809e^-4	1	INTERGENIC
3R	18916561	3R_18916561_SNP [dm3] 3R_23090839_SNP [dm6]	G	C	3.810e^-4	1	UPSTREAM CG6726 & 1 other INTRON CG13830
3R	25827985	3R_25827985_SNP [dm3] 3R_30002263_SNP [dm6]	G	A	3.816e^-4	1	SYNONYMOUS_CODING Tace UTR_3_PRIME Tace	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6821991	2R_6821991_INS [dm3] 2R_10934486_INS [dm6]	C	CC	3.818e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9413570	2L_9413570_SNP [dm3] 2L_9413570_SNP [dm6]	C	G	3.819e^-4	1	INTRON Shawl
2R	18698294	2R_18698294_SNP [dm3] 2R_22810789_SNP [dm6]	G	A	3.823e^-4	1	INTRON stl
2R	10819560	2R_10819560_SNP [dm3] 2R_14932055_SNP [dm6]	A	G	3.828e^-4	1	SYNONYMOUS_CODING CG10253	TF binding site mE1_TFBS_sens
2L	18735320	2L_18735320_SNP [dm3] 2L_18735320_SNP [dm6]	A	T	3.840e^-4	1	UPSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	23800761	3R_23800761_SNP [dm3] 3R_27975039_SNP [dm6]	G	C	3.842e^-4	1	INTRON betaTub97EF
2L	11282910	2L_11282910_SNP [dm3] 2L_11282910_SNP [dm6]	T	C	3.844e^-4	1	SYNONYMOUS_CODING mre11 DOWNSTREAM Ppt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11537672	3L_11537672_SNP [dm3] 3L_11544572_SNP [dm6]	C	A	3.845e^-4	1	INTRON Mob2
2L	4988694	2L_4988694_SNP [dm3] 2L_4988694_SNP [dm6]	A	T	3.860e^-4	1	INTRON CG34126
2R	16635051	2R_16635051_SNP [dm3] 2R_20747546_SNP [dm6]	C	T	3.868e^-4	1	INTRON dpr
2L	16686295	2L_16686295_DEL [dm3] 2L_16686295_DEL [dm6]	TTATT	T	3.871e^-4	1	INTRON grp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	15129428	X_15129428_SNP [dm3] X_15235395_SNP [dm6]	A	G	3.874e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7573804	2L_7573804_SNP [dm3] 2L_7573804_SNP [dm6]	C	A	3.875e^-4	1	INTRON RapGAP1
3R	17078203	3R_17078203_SNP [dm3] 3R_21252481_SNP [dm6]	T	G	3.877e^-4	1	INTRON ETHR
3R	23501045	3R_23501045_SNP [dm3] 3R_27675323_SNP [dm6]	C	T	3.887e^-4	1	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
3L	19628156	3L_19628156_INS [dm3] 3L_19635056_INS [dm6]	T	TT	3.888e^-4	1	INTRON wnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	18961657	3R_18961657_SNP [dm3] 3R_23135935_SNP [dm6]	A	C	3.890e^-4	1	INTRON hh	regulatory region REDfly_CRMs
3L	19934559	3L_19934559_SNP [dm3] 3L_19941459_SNP [dm6]	C	G	3.897e^-4	1	INTRON Ac76E
2L	10013272	2L_10013272_SNP [dm3] 2L_10013272_SNP [dm6]	T	G	3.898e^-4	1	STOP_LOST CG13131 DOWNSTREAM Trp1
3R	14801923	3R_14801923_SNP [dm3] 3R_18976201_SNP [dm6]	C	T	3.922e^-4	1	UTR_3_PRIME CG42613 & 1 other
3R	21517585	3R_21517585_SNP [dm3] 3R_25691863_SNP [dm6]	G	A	3.937e^-4	1	INTERGENIC
X	15324740	X_15324740_SNP [dm3] X_15430707_SNP [dm6]	C	G	3.943e^-4	1	INTRON Cngl
2R	17652395	2R_17652395_DEL [dm3] 2R_21764890_DEL [dm6]	AA	A	3.946e^-4	1	UPSTREAM CR43983 & 1 other DOWNSTREAM CR43984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1690173	3L_1690173_SNP [dm3] 3L_1690173_SNP [dm6]	T	C	3.947e^-4	1	INTRON CG7991
2R	10705876	2R_10705876_SNP [dm3] 2R_14818371_SNP [dm6]	C	T	3.951e^-4	1	SYNONYMOUS_CODING CG10202	TF binding site mE1_TFBS_sens
3R	14924710	3R_14924710_SNP [dm3] 3R_19098988_SNP [dm6]	A	T	3.955e^-4	1	INTRON CG6040	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13467696	X_13467696_SNP [dm3] X_13573663_SNP [dm6]	G	A	3.963e^-4	1	INTRON Tango13
3L	5775101	3L_5775101_SNP [dm3] 3L_5782001_SNP [dm6]	T	C	3.965e^-4	1	SYNONYMOUS_CODING PGRP-LD UTR_3_PRIME Pmi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8250509	2L_8250509_SNP [dm3] 2L_8250509_SNP [dm6]	A	T	3.970e^-4	1	INTRON CG8086
2L	17029718	2L_17029718_SNP [dm3] 2L_17029718_SNP [dm6]	T	A	3.971e^-4	1	INTERGENIC
X	13622689	X_13622689_SNP [dm3] X_13728656_SNP [dm6]	T	C	3.999e^-4	1	INTRON g
2L	12082811	2L_12082811_SNP [dm3] 2L_12082811_SNP [dm6]	A	G	3.999e^-4	1	UPSTREAM CR44590 DOWNSTREAM prd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8205354	2L_8205354_SNP [dm3] 2L_8205354_SNP [dm6]	G	A	4.000e^-4	1	UPSTREAM SLC5A11 & 1 other DOWNSTREAM CR44120 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8184763	3R_8184763_SNP [dm3] 3R_12359041_SNP [dm6]	T	C	4.001e^-4	1	UPSTREAM CG4115 INTERGENIC
3L	9697366	3L_9697366_SNP [dm3] 3L_9704266_SNP [dm6]	T	C	4.010e^-4	1	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15152493	2L_15152493_SNP [dm3] 2L_15152493_SNP [dm6]	C	A	4.029e^-4	1	INTERGENIC
3R	11270838	3R_11270838_SNP [dm3] 3R_15445116_SNP [dm6]	A	G	4.030e^-4	1	SYNONYMOUS_CODING AdamTS-A
3L	13311750	3L_13311750_SNP [dm3] 3L_13318650_SNP [dm6]	T	C	4.038e^-4	1	INTERGENIC
2L	14259244	2L_14259244_SNP [dm3] 2L_14259244_SNP [dm6]	G	T	4.042e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8752771	X_8752771_SNP [dm3] X_8858738_SNP [dm6]	T	A	4.058e^-4	1	INTRON CG12075
3L	3534316	3L_3534316_SNP [dm3] 3L_3534316_SNP [dm6]	A	G	4.063e^-4	1	INTRON Eip63E
X	8752743	X_8752743_SNP [dm3] X_8858710_SNP [dm6]	G	A	4.066e^-4	1	INTRON CG12075
3L	3364797	3L_3364797_SNP [dm3] 3L_3364797_SNP [dm6]	A	G	4.083e^-4	1	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4984263	X_4984263_SNP [dm3] X_5090230_SNP [dm6]	T	G	4.087e^-4	1	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12981683	3L_12981683_SNP [dm3] 3L_12988583_SNP [dm6]	C	A	4.087e^-4	1	INTERGENIC
2L	253948	2L_253948_SNP [dm3] 2L_253948_SNP [dm6]	C	A	4.091e^-4	1	SPLICE_SITE_REGION CG3645 INTRON CG3645	TF binding site mE1_TFBS_inv
3R	15973532	3R_15973532_SNP [dm3] 3R_20147810_SNP [dm6]	A	C	4.098e^-4	1	INTERGENIC
3L	16971100	3L_16971100_SNP [dm3] 3L_16978000_SNP [dm6]	T	G	4.105e^-4	1	INTRON Exn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25823013	3R_25823013_SNP [dm3] 3R_29997291_SNP [dm6]	T	G	4.111e^-4	1	SYNONYMOUS_CODING CG15525 UPSTREAM CG11504 DOWNSTREAM Sas-6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12831208	2L_12831208_SNP [dm3] 2L_12831208_SNP [dm6]	G	A	4.121e^-4	1	INTERGENIC
2L	7574488	2L_7574488_SNP [dm3] 2L_7574488_SNP [dm6]	A	T	4.129e^-4	1	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
2R	18514928	2R_18514928_SNP [dm3] 2R_22627423_SNP [dm6]	C	G	4.133e^-4	1	INTRON CG33143
3R	20301041	3R_20301041_SNP [dm3] 3R_24475319_SNP [dm6]	A	C	4.142e^-4	1	INTERGENIC
2L	9413663	2L_9413663_SNP [dm3] 2L_9413663_SNP [dm6]	G	A	4.143e^-4	1	INTRON Shawl
3R	12457232	3R_12457232_SNP [dm3] 3R_16631510_SNP [dm6]	T	C	4.143e^-4	1	INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12147908	3R_12147908_SNP [dm3] 3R_16322186_SNP [dm6]	A	G	4.151e^-4	1	UTR_3_PRIME CG44044 DOWNSTREAM tRNA:F2:89BC & 1 other INTRON Sulf1
2R	18818427	2R_18818427_SNP [dm3] 2R_22930904_SNP [dm6]	G	A	4.169e^-4	1	SYNONYMOUS_CODING CG42678 INTRON CG42678	TF binding site mE1_TFBS_inv
3L	9868654	3L_9868654_INS [dm3] 3L_9875554_INS [dm6]	A	AC	4.173e^-4	1	UPSTREAM CR45406 INTERGENIC
3R	17460827	3R_17460827_DEL [dm3] 3R_21635105_DEL [dm6]	TT	T	4.177e^-4	1	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9696972	3L_9696972_INS [dm3] 3L_9703872_INS [dm6]	T	TGTT	4.190e^-4	1	UPSTREAM CG16711 & 1 other INTERGENIC
2L	2666714	2L_2666714_SNP [dm3] 2L_2666714_SNP [dm6]	G	A	4.191e^-4	1	DOWNSTREAM CG9879 INTERGENIC
3R	6502338	3R_6502338_SNP [dm3] 3R_10676616_SNP [dm6]	G	T	4.192e^-4	1	INTRON CG6465
3R	12594866	3R_12594866_SNP [dm3] 3R_16769144_SNP [dm6]	A	T	4.202e^-4	1	INTRON bxd	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13893249	2R_13893249_SNP [dm3] 2R_18005744_SNP [dm6]	A	G	4.203e^-4	1	INTRON dpr13 EXON CR44419
3L	16259045	3L_16259045_SNP [dm3] 3L_16265945_SNP [dm6]	C	T	4.204e^-4	1	UTR_3_PRIME CG4950 UPSTREAM CG13051 DOWNSTREAM CG4950 & 1 other
3R	7655499	3R_7655499_SNP [dm3] 3R_11829777_SNP [dm6]	C	A	4.209e^-4	1	INTRON CG6959
2L	8205304	2L_8205304_INS [dm3] 2L_8205304_INS [dm6]	A	AAACTAAATGTATATGACT...	4.216e^-4	1	UPSTREAM SLC5A11 & 1 other DOWNSTREAM CR44120 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17581896	2R_17581896_SNP [dm3] 2R_21694391_SNP [dm6]	T	C	4.217e^-4	1	INTRON CngB	TF binding site mE1_TFBS_cad
X	22058040	X_22058040_INS [dm3] X_22656204_INS [dm6]	C	CGC	4.217e^-4	1	INTERGENIC
3R	24806512	3R_24806512_SNP [dm3] 3R_28980790_SNP [dm6]	C	A	4.226e^-4	1	INTERGENIC
3R	9579998	3R_9579998_SNP [dm3] 3R_13754276_SNP [dm6]	A	G	4.238e^-4	1	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16313068	2R_16313068_SNP [dm3] 2R_20425563_SNP [dm6]	T	C	4.243e^-4	1	INTRON CG12484
2L	178666	2L_178666_SNP [dm3] 2L_178666_SNP [dm6]	A	T	4.244e^-4	1	INTRON spen
3L	13956994	3L_13956994_SNP [dm3] 3L_13963894_SNP [dm6]	A	G	4.252e^-4	1	NON_SYNONYMOUS_CODING Meics
3L	2157170	3L_2157170_DEL [dm3] 3L_2157170_DEL [dm6]	AT	A	4.259e^-4	1	INTRON CG15822	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5556250	3L_5556250_SNP [dm3] 3L_5563150_SNP [dm6]	G	A	4.259e^-4	1	SYNONYMOUS_CODING Sucb UPSTREAM Sras	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4988712	2L_4988712_SNP [dm3] 2L_4988712_SNP [dm6]	C	T	4.272e^-4	1	INTRON CG34126
X	13763223	X_13763223_SNP [dm3] X_13869190_SNP [dm6]	T	G	4.285e^-4	1	UTR_3_PRIME mamo DOWNSTREAM mamo INTRON mamo
2R	17505067	2R_17505067_SNP [dm3] 2R_21617562_SNP [dm6]	A	G	4.296e^-4	1	SYNONYMOUS_CODING clt UPSTREAM CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	9433746	2R_9433746_SNP [dm3] 2R_13546241_SNP [dm6]	T	C	4.299e^-4	1	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	9433752	2R_9433752_SNP [dm3] 2R_13546247_SNP [dm6]	A	G	4.299e^-4	1	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
X	2587109	X_2587109_SNP [dm3] X_2693076_SNP [dm6]	A	G	4.322e^-4	1	SYNONYMOUS_CODING CG2650 DOWNSTREAM per
3L	11548190	3L_11548190_SNP [dm3] 3L_11555090_SNP [dm6]	G	A	4.323e^-4	1	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16237823	2R_16237823_SNP [dm3] 2R_20350318_SNP [dm6]	A	G	4.323e^-4	1	INTERGENIC
3L	13818645	3L_13818645_SNP [dm3] 3L_13825545_SNP [dm6]	T	C	4.340e^-4	1	INTERGENIC
3L	12981568	3L_12981568_SNP [dm3] 3L_12988468_SNP [dm6]	A	T	4.347e^-4	1	INTERGENIC
3L	13818636	3L_13818636_INS [dm3] 3L_13825536_INS [dm6]	G	GA	4.347e^-4	1	INTERGENIC
X	5000614	X_5000614_SNP [dm3] X_5106581_SNP [dm6]	A	G	4.371e^-4	1	INTRON rg & 1 other
3R	16959294	3R_16959294_SNP [dm3] 3R_21133572_SNP [dm6]	G	A	4.376e^-4	1	SYNONYMOUS_CODING CG7009 UPSTREAM Ubpy DOWNSTREAM Ice2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	8611629	3L_8611629_SNP [dm3] 3L_8618529_SNP [dm6]	T	A	4.379e^-4	1	INTRON S-Lap1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12153856	3R_12153856_SNP [dm3] 3R_16328134_SNP [dm6]	T	C	4.383e^-4	1	SYNONYMOUS_CODING CG17930 DOWNSTREAM CG17929 INTRON Sulf1	TF binding site mE1_TFBS_cad
3R	24833637	3R_24833637_SNP [dm3] 3R_29007915_SNP [dm6]	C	G	4.385e^-4	1	DOWNSTREAM mir-4947 INTRON wat
2R	20703436	2R_20703436_SNP [dm3] 2R_24815913_SNP [dm6]	C	A	4.387e^-4	1	INTRON Dll
3R	4965322	3R_4965322_DEL [dm3] 3R_9139600_DEL [dm6]	TG	T	4.389e^-4	1	INTRON pum
3L	9687897	3L_9687897_SNP [dm3] 3L_9694797_SNP [dm6]	A	G	4.391e^-4	1	UPSTREAM CR45121 & 1 other INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13252852	3R_13252852_INS [dm3] 3R_17427130_INS [dm6]	A	AT	4.403e^-4	1	INTRON CG5873
2L	16123077	2L_16123077_SNP [dm3] 2L_16123077_SNP [dm6]	G	C	4.404e^-4	1	INTERGENIC
3R	17671177	3R_17671177_SNP [dm3] 3R_21845455_SNP [dm6]	C	T	4.408e^-4	1	SYNONYMOUS_STOP Gr93d UPSTREAM Gr93c EXON CR44087
3R	23499826	3R_23499826_SNP [dm3] 3R_27674104_SNP [dm6]	A	C	4.417e^-4	1	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
3L	8683210	3L_8683210_SNP [dm3] 3L_8690110_SNP [dm6]	T	C	4.425e^-4	1	INTERGENIC
3R	20515699	3R_20515699_INS [dm3] 3R_24689977_INS [dm6]	T	TTTG	4.426e^-4	1	INTRON slo
3L	15177884	3L_15177884_SNP [dm3] 3L_15184784_SNP [dm6]	G	T	4.428e^-4	1	INTERGENIC
3L	5371734	3L_5371734_SNP [dm3] 3L_5378634_SNP [dm6]	T	C	4.431e^-4	1	DOWNSTREAM Ir64a & 1 other INTERGENIC
3L	14249605	3L_14249605_SNP [dm3] 3L_14256505_SNP [dm6]	C	G	4.438e^-4	1	INTERGENIC
3R	10288844	3R_10288844_SNP [dm3] 3R_14463122_SNP [dm6]	T	C	4.444e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18484808	2R_18484808_SNP [dm3] 2R_22597303_SNP [dm6]	C	T	4.444e^-4	1	START_GAINED CG4269 UTR_5_PRIME CG4269 UPSTREAM CR45328 DOWNSTREAM CG3927	TF binding site mE1_TFBS_sens
2R	6214517	2R_6214517_SNP [dm3] 2R_10327012_SNP [dm6]	G	C	4.447e^-4	1	INTRON CG42732
2R	18515797	2R_18515797_SNP [dm3] 2R_22628292_SNP [dm6]	C	T	4.447e^-4	1	INTRON CG33143
3R	24813036	3R_24813036_SNP [dm3] 3R_28987314_SNP [dm6]	T	G	4.456e^-4	1	INTERGENIC
3R	18217073	3R_18217073_INS [dm3] 3R_22391351_INS [dm6]	T	TT	4.468e^-4	1	DOWNSTREAM CG13857 INTRON CG7059	TF binding site mE1_TFBS_cad
3L	8382358	3L_8382358_SNP [dm3] 3L_8389258_SNP [dm6]	C	T	4.483e^-4	1	SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13311731	3L_13311731_SNP [dm3] 3L_13318631_SNP [dm6]	A	G	4.486e^-4	1	INTERGENIC
2L	9159180	2L_9159180_DEL [dm3] 2L_9159180_DEL [dm6]	GA	G	4.491e^-4	1	INTRON CG32982	TF binding site BDTNP1_TFBS_dl
3L	14932161	3L_14932161_SNP [dm3] 3L_14939061_SNP [dm6]	A	C	4.491e^-4	1	SYNONYMOUS_CODING DCX-EMAP
3L	18245863	3L_18245863_SNP [dm3] 3L_18252763_SNP [dm6]	T	C	4.492e^-4	1	UTR_3_PRIME CheA75a
3L	7843582	3L_7843582_SNP [dm3] 3L_7850482_SNP [dm6]	T	A	4.499e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
X	6592817	X_6592817_SNP [dm3] X_6698784_SNP [dm6]	T	A	4.504e^-4	1	UPSTREAM CG14440 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	1173820	X_1173820_SNP [dm3] X_1279787_SNP [dm6]	G	C	4.511e^-4	1	INTERGENIC
X	15214075	X_15214075_SNP [dm3] X_15320042_SNP [dm6]	A	C	4.511e^-4	1	UPSTREAM Top1 & 1 other DOWNSTREAM gce INTRON Top1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9696978	3L_9696978_SNP [dm3] 3L_9703878_SNP [dm6]	T	A	4.515e^-4	1	UPSTREAM CG16711 & 1 other INTERGENIC
2R	10707490	2R_10707490_SNP [dm3] 2R_14819985_SNP [dm6]	C	T	4.522e^-4	1	UTR_5_PRIME CG10202
2R	9266598	2R_9266598_SNP [dm3] 2R_13379093_SNP [dm6]	C	T	4.526e^-4	1	INTERGENIC
3L	16417778	3L_16417778_INS [dm3] 3L_16424678_INS [dm6]	T	TCCCGAT	4.532e^-4	1	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_twi
X	15324739	X_15324739_SNP [dm3] X_15430706_SNP [dm6]	G	A	4.533e^-4	1	INTRON Cngl
2R	19452755	2R_19452755_SNP [dm3] 2R_23565232_SNP [dm6]	T	A	4.552e^-4	1	DOWNSTREAM CG30184 INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9433744	2R_9433744_SNP [dm3] 2R_13546239_SNP [dm6]	G	T	4.566e^-4	1	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	3431809	3L_3431809_SNP [dm3] 3L_3431809_SNP [dm6]	G	C	4.568e^-4	1	INTRON eIF5B
3R	17853263	3R_17853263_SNP [dm3] 3R_22027541_SNP [dm6]	C	A	4.581e^-4	1	UPSTREAM ND42 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9413563	2L_9413563_SNP [dm3] 2L_9413563_SNP [dm6]	C	T	4.587e^-4	1	INTRON Shawl
3L	7993665	3L_7993665_DEL [dm3] 3L_8000565_DEL [dm6]	CT	C	4.590e^-4	1	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16312972	2R_16312972_SNP [dm3] 2R_20425467_SNP [dm6]	C	G	4.590e^-4	1	INTRON CG12484
2R	14807626	2R_14807626_SNP [dm3] 2R_18920121_SNP [dm6]	G	A	4.599e^-4	1	INTRON sano
3R	10601328	3R_10601328_SNP [dm3] 3R_14775606_SNP [dm6]	A	T	4.602e^-4	1	INTRON jvl
2L	16486256	2L_16486256_SNP [dm3] 2L_16486256_SNP [dm6]	C	T	4.605e^-4	1	UPSTREAM dac INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	6502332	3R_6502332_SNP [dm3] 3R_10676610_SNP [dm6]	A	G	4.624e^-4	1	INTRON CG6465
2R	9975926	2R_9975926_SNP [dm3] 2R_14088421_SNP [dm6]	C	T	4.642e^-4	1	INTRON Prosap
2L	11128788	2L_11128788_SNP [dm3] 2L_11128788_SNP [dm6]	A	G	4.646e^-4	1	DOWNSTREAM RfC38 INTRON Nup160	TF binding site mE1_TFBS_inv
3R	20301040	3R_20301040_SNP [dm3] 3R_24475318_SNP [dm6]	C	A	4.653e^-4	1	INTERGENIC
X	13816040	X_13816040_SNP [dm3] X_13922007_SNP [dm6]	T	C	4.675e^-4	1	INTRON mamo
3L	1691197	3L_1691197_SNP [dm3] 3L_1691197_SNP [dm6]	C	T	4.681e^-4	1	INTRON CG7991
3L	16213033	3L_16213033_SNP [dm3] 3L_16219933_SNP [dm6]	C	A	4.682e^-4	1	INTERGENIC
2R	18084355	2R_18084355_SNP [dm3] 2R_22196850_SNP [dm6]	A	T	4.682e^-4	1	DOWNSTREAM snoRNA:Or-CD1 INTRON Swim	TF binding site BDTNP1_TFBS_dl
3L	18492508	3L_18492508_SNP [dm3] 3L_18499408_SNP [dm6]	G	T	4.686e^-4	1	INTRON AstC-R2
2L	9324014	2L_9324014_SNP [dm3] 2L_9324014_SNP [dm6]	A	C	4.692e^-4	1	INTERGENIC
X	14428958	X_14428958_SNP [dm3] X_14534925_SNP [dm6]	G	A	4.696e^-4	1	INTERGENIC
2R	10504618	2R_10504618_SNP [dm3] 2R_14617113_SNP [dm6]	A	G	4.703e^-4	1	SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_sens
3R	19051990	3R_19051990_SNP [dm3] 3R_23226268_SNP [dm6]	G	C	4.703e^-4	1	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16602174	3R_16602174_SNP [dm3] 3R_20776452_SNP [dm6]	C	G	4.704e^-4	1	INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23926067	3R_23926067_SNP [dm3] 3R_28100345_SNP [dm6]	A	C	4.707e^-4	1	INTERGENIC
3L	15650062	3L_15650062_SNP [dm3] 3L_15656962_SNP [dm6]	C	A	4.722e^-4	1	UPSTREAM Eig71Ee & 1 other INTRON Eig71Ef
3R	18302911	3R_18302911_SNP [dm3] 3R_22477189_SNP [dm6]	G	T	4.723e^-4	1	INTRON Nrx-1
2L	10725197	2L_10725197_SNP [dm3] 2L_10725197_SNP [dm6]	T	G	4.725e^-4	1	UPSTREAM CG6431 INTRON CG6431
3R	16041063	3R_16041063_SNP [dm3] 3R_20215341_SNP [dm6]	G	A	4.726e^-4	1	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
2L	3530923	2L_3530923_SNP [dm3] 2L_3530923_SNP [dm6]	G	A	4.728e^-4	1	SYNONYMOUS_CODING Che-13 UPSTREAM Spindly	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	13748214	2L_13748214_SNP [dm3] 2L_13748214_SNP [dm6]	A	G	4.730e^-4	1	UPSTREAM mir-1002 & 1 other INTRON CR44846 & 1 other
2L	15752258	2L_15752258_SNP [dm3] 2L_15752258_SNP [dm6]	A	T	4.731e^-4	1	UPSTREAM l_2_35Df & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16289073	3L_16289073_SNP [dm3] 3L_16295973_SNP [dm6]	T	A	4.733e^-4	1	UPSTREAM CG4962 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14499564	3L_14499564_SNP [dm3] 3L_14506464_SNP [dm6]	G	T	4.735e^-4	1	INTRON bbg
2L	14020974	2L_14020974_SNP [dm3] 2L_14020974_SNP [dm6]	C	T	4.735e^-4	1	UPSTREAM NimC3 DOWNSTREAM CR44849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15977310	3R_15977310_SNP [dm3] 3R_20151588_SNP [dm6]	C	A	4.735e^-4	1	INTERGENIC
2R	10701770	2R_10701770_SNP [dm3] 2R_14814265_SNP [dm6]	T	A	4.736e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	13762224	3L_13762224_INS [dm3] 3L_13769124_INS [dm6]	T	TT	4.740e^-4	1	INTRON bru-3
2L	15943950	2L_15943950_SNP [dm3] 2L_15943950_SNP [dm6]	T	C	4.742e^-4	1	INTRON beat-Ib
3R	25120035	3R_25120035_SNP [dm3] 3R_29294313_SNP [dm6]	G	A	4.745e^-4	1	UTR_3_PRIME CG14506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16193198	3L_16193198_SNP [dm3] 3L_16200098_SNP [dm6]	C	A	4.753e^-4	1	UPSTREAM CG33689 DOWNSTREAM CG33688 INTERGENIC	TF binding site mE1_TFBS_kn
2R	20667324	2R_20667324_SNP [dm3] 2R_24779801_SNP [dm6]	G	A	4.757e^-4	1	NON_SYNONYMOUS_CODING egg DOWNSTREAM Lcp9 EXON CR44067	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22269858	3R_22269858_SNP [dm3] 3R_26444136_SNP [dm6]	C	G	4.769e^-4	1	INTRON tx
3R	10783862	3R_10783862_SNP [dm3] 3R_14958140_SNP [dm6]	A	T	4.790e^-4	1	INTERGENIC
X	21380975	X_21380975_SNP [dm3] X_21509948_SNP [dm6]	G	A	4.792e^-4	1	INTRON CR45082
X	14306620	X_14306620_SNP [dm3] X_14412587_SNP [dm6]	C	A	4.797e^-4	1	INTRON dpr8
3R	17603608	3R_17603608_SNP [dm3] 3R_21777886_SNP [dm6]	T	G	4.811e^-4	1	UPSTREAM RpI12 DOWNSTREAM tsl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5549429	3L_5549429_SNP [dm3] 3L_5556329_SNP [dm6]	G	T	4.831e^-4	1	INTERGENIC
2L	2024293	2L_2024293_SNP [dm3] 2L_2024293_SNP [dm6]	C	T	4.841e^-4	1	INTRON CG4238
3L	18492193	3L_18492193_SNP [dm3] 3L_18499093_SNP [dm6]	G	T	4.848e^-4	1	INTRON AstC-R2
2R	17851495	2R_17851495_SNP [dm3] 2R_21963990_SNP [dm6]	G	A	4.854e^-4	1	UPSTREAM ppk9 INTERGENIC
3L	11253150	3L_11253150_SNP [dm3] 3L_11260050_SNP [dm6]	G	T	4.862e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3358129	3L_3358129_SNP [dm3] 3L_3358129_SNP [dm6]	G	A	4.872e^-4	1	SPLICE_SITE_REGION kst INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	12427278	3L_12427278_SNP [dm3] 3L_12434178_SNP [dm6]	T	A	4.873e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	20699976	2R_20699976_SNP [dm3] 2R_24812453_SNP [dm6]	T	G	4.887e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8846414	2R_8846414_DEL [dm3] 2R_12958909_DEL [dm6]	ATGCTGCTGT	G	4.909e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9786762	3L_9786762_SNP [dm3] 3L_9793662_SNP [dm6]	T	G	4.917e^-4	1	NON_SYNONYMOUS_CODING Zasp67
3L	9699387	3L_9699387_SNP [dm3] 3L_9706287_SNP [dm6]	G	C	4.917e^-4	1	NON_SYNONYMOUS_CODING CG16711	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10907530	3L_10907530_SNP [dm3] 3L_10914430_SNP [dm6]	A	T	4.920e^-4	1	INTERGENIC
3R	25852565	3R_25852565_SNP [dm3] 3R_30026843_SNP [dm6]	C	T	4.922e^-4	1	UPSTREAM Axn INTRON Axn	TF binding site mE1_TFBS_HSA
X	12675979	X_12675979_SNP [dm3] X_12781946_SNP [dm6]	C	A	4.927e^-4	1	INTRON CG32647
3L	18258329	3L_18258329_SNP [dm3] 3L_18265229_SNP [dm6]	T	C	4.931e^-4	1	INTERGENIC
2L	2024294	2L_2024294_SNP [dm3] 2L_2024294_SNP [dm6]	T	C	4.934e^-4	1	INTRON CG4238
3R	6378514	3R_6378514_SNP [dm3] 3R_10552792_SNP [dm6]	C	A	4.942e^-4	1	INTRON hth
2R	8616485	2R_8616485_SNP [dm3] 2R_12728980_SNP [dm6]	C	G	4.947e^-4	1	INTRON CG42663
3R	16742444	3R_16742444_DEL [dm3] 3R_20916722_DEL [dm6]	ATAC	A	4.953e^-4	1	INTRON CG31191 & 1 other
3L	13818635	3L_13818635_SNP [dm3] 3L_13825535_SNP [dm6]	G	A	4.955e^-4	1	INTERGENIC
X	8706601	X_8706601_SNP [dm3] X_8812568_SNP [dm6]	A	C	4.959e^-4	1	INTERGENIC
3L	10358250	3L_10358250_DEL [dm3] 3L_10365150_DEL [dm6]	GTTG	G	4.960e^-4	1	UPSTREAM mir-276a EXON CR44327
2L	14661129	2L_14661129_SNP [dm3] 2L_14661129_SNP [dm6]	C	T	4.960e^-4	1	INTRON osp
3L	13966955	3L_13966955_SNP [dm3] 3L_13973855_SNP [dm6]	C	A	4.964e^-4	1	UPSTREAM Hsc70-1 & 1 other DOWNSTREAM Nxf3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9697155	3L_9697155_SNP [dm3] 3L_9704055_SNP [dm6]	A	C	4.974e^-4	1	UPSTREAM CG16711 & 1 other INTERGENIC
2R	21054899	2R_21054899_SNP [dm3] 2R_25167376_SNP [dm6]	T	C	4.978e^-4	1	UPSTREAM CG34038 INTERGENIC
2L	17465339	2L_17465339_SNP [dm3] 2L_17465339_SNP [dm6]	C	A	4.979e^-4	1	INTRON BicD
2L	1468879	2L_1468879_SNP [dm3] 2L_1468879_SNP [dm6]	A	C	4.982e^-4	1	INTERGENIC
3L	6696789	3L_6696789_DEL [dm3] 3L_6703689_DEL [dm6]	TACGATTTCTAT...	C	4.984e^-4	1	UPSTREAM SP1173 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8066656	3L_8066656_SNP [dm3] 3L_8073556_SNP [dm6]	A	G	4.984e^-4	1	UPSTREAM Ect4 INTRON Ect4	TF binding site mE1_TFBS_Trl
2R	2434245	2R_2434245_DEL [dm3] 2R_6546740_DEL [dm6]	AA	G	4.996e^-4	1	INTRON jing	TF binding site mE1_TFBS_cad
3L	3123834	3L_3123834_SNP [dm3] 3L_3123834_SNP [dm6]	T	A	4.999e^-4	1	UPSTREAM prominin-like INTRON prominin-like
3R	25921522	3R_25921522_SNP [dm3] 3R_30095800_SNP [dm6]	A	T	5.000e^-4	1	INTRON sima
3L	8217907	3L_8217907_SNP [dm3] 3L_8224807_SNP [dm6]	G	A	5.000e^-4	1	INTERGENIC
X	8435437	X_8435437_SNP [dm3] X_8541404_SNP [dm6]	T	C	5.004e^-4	1	INTRON Nrg
3R	20333921	3R_20333921_SNP [dm3] 3R_24508199_SNP [dm6]	G	A	5.011e^-4	1	INTERGENIC
2L	16674424	2L_16674424_SNP [dm3] 2L_16674424_SNP [dm6]	C	T	5.016e^-4	1	INTRON Trpgamma
X	13868832	X_13868832_SNP [dm3] X_13974799_SNP [dm6]	C	G	5.017e^-4	1	INTRON mamo
3L	14249819	3L_14249819_SNP [dm3] 3L_14256719_SNP [dm6]	A	T	5.025e^-4	1	INTERGENIC
X	9277731	X_9277731_SNP [dm3] X_9383698_SNP [dm6]	T	C	5.026e^-4	1	INTRON mgl
3L	8909790	3L_8909790_DEL [dm3] 3L_8916690_DEL [dm6]	TT	T	5.026e^-4	1	INTRON Tsp66E
3L	1291374	3L_1291374_SNP [dm3] 3L_1291374_SNP [dm6]	C	A	5.030e^-4	1	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5124870	3R_5124870_SNP [dm3] 3R_9299148_SNP [dm6]	T	G	5.032e^-4	1	INTRON CG8861
3R	19887954	3R_19887954_SNP [dm3] 3R_24062232_SNP [dm6]	T	C	5.045e^-4	1	SYNONYMOUS_CODING SMC1 DOWNSTREAM 4EHP
3R	17483471	3R_17483471_SNP [dm3] 3R_21657749_SNP [dm6]	T	C	5.045e^-4	1	INTRON E2f
3L	5676461	3L_5676461_SNP [dm3] 3L_5683361_SNP [dm6]	G	A	5.048e^-4	1	INTRON sif
3R	12154706	3R_12154706_SNP [dm3] 3R_16328984_SNP [dm6]	C	T	5.050e^-4	1	SYNONYMOUS_CODING CG17930 INTRON Sulf1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26820365	3R_26820365_SNP [dm3] 3R_30994643_SNP [dm6]	G	A	5.054e^-4	1	INTRON 5-HT7
X	5323236	X_5323236_SNP [dm3] X_5429203_SNP [dm6]	A	G	5.054e^-4	1	UPSTREAM CG15784 DOWNSTREAM CG16756 EXON CR45517
3R	13362484	3R_13362484_SNP [dm3] 3R_17536762_SNP [dm6]	C	T	5.054e^-4	1	DOWNSTREAM l_3_07882 INTRON P5cr-2
3L	2684216	3L_2684216_SNP [dm3] 3L_2684216_SNP [dm6]	G	A	5.054e^-4	1	INTRON Fife
3R	14924728	3R_14924728_SNP [dm3] 3R_19099006_SNP [dm6]	T	A	5.061e^-4	1	INTRON CG6040	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9310315	2R_9310315_SNP [dm3] 2R_13422810_SNP [dm6]	A	G	5.064e^-4	1	DOWNSTREAM CG30060 INTRON CG42321
3R	18961675	3R_18961675_DEL [dm3] 3R_23135953_DEL [dm6]	GTG	G	5.066e^-4	1	INTRON hh	regulatory region REDfly_CRMs
2R	15000905	2R_15000905_SNP [dm3] 2R_19113400_SNP [dm6]	A	T	5.081e^-4	1	INTRON 5-HT1A
X	8706590	X_8706590_SNP [dm3] X_8812557_SNP [dm6]	A	G	5.081e^-4	1	INTERGENIC
3L	5775619	3L_5775619_SNP [dm3] 3L_5782519_SNP [dm6]	T	G	5.081e^-4	1	DOWNSTREAM Cralbp INTRON Pmi & 1 other
3L	3276914	3L_3276914_SNP [dm3] 3L_3276914_SNP [dm6]	C	T	5.086e^-4	1	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	15127030	3L_15127030_SNP [dm3] 3L_15133930_SNP [dm6]	T	A	5.087e^-4	1	SYNONYMOUS_CODING CG12316 DOWNSTREAM scaRNA:MeU5-U42
3L	6099503	3L_6099503_SNP [dm3] 3L_6106403_SNP [dm6]	C	T	5.095e^-4	1	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	21513479	3R_21513479_SNP [dm3] 3R_25687757_SNP [dm6]	A	T	5.099e^-4	1	UPSTREAM CLS INTERGENIC
2R	17671162	2R_17671162_SNP [dm3] 2R_21783657_SNP [dm6]	C	T	5.101e^-4	1	INTERGENIC
2L	13977298	2L_13977298_SNP [dm3] 2L_13977298_SNP [dm6]	T	G	5.101e^-4	1	UPSTREAM Cyp28a5 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3R	17452472	3R_17452472_SNP [dm3] 3R_21626750_SNP [dm6]	A	G	5.108e^-4	1	UTR_5_PRIME E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4108437	X_4108437_SNP [dm3] X_4214404_SNP [dm6]	G	A	5.118e^-4	1	DOWNSTREAM CG43288 INTERGENIC
2R	10705467	2R_10705467_SNP [dm3] 2R_14817962_SNP [dm6]	G	A	5.119e^-4	1	STOP_GAINED CG10202	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1126693	2L_1126693_SNP [dm3] 2L_1126693_SNP [dm6]	C	A	5.123e^-4	1	INTRON Pino
X	2793841	X_2793841_SNP [dm3] X_2899808_SNP [dm6]	T	G	5.126e^-4	1	INTRON kirre
2L	6823450	2L_6823450_SNP [dm3] 2L_6823450_SNP [dm6]	T	G	5.130e^-4	1	INTRON sens-2
2L	9274796	2L_9274796_SNP [dm3] 2L_9274796_SNP [dm6]	T	C	5.132e^-4	1	INTRON Ggamma30A
3L	10613906	3L_10613906_SNP [dm3] 3L_10620806_SNP [dm6]	A	T	5.138e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	14714019	3L_14714019_SNP [dm3] 3L_14720919_SNP [dm6]	A	G	5.152e^-4	1	INTRON ome
3L	15650015	3L_15650015_SNP [dm3] 3L_15656915_SNP [dm6]	A	T	5.155e^-4	1	UPSTREAM Eig71Ee & 1 other INTRON Eig71Ef
X	8706609	X_8706609_SNP [dm3] X_8812576_SNP [dm6]	C	T	5.156e^-4	1	INTERGENIC
2L	16470931	2L_16470931_SNP [dm3] 2L_16470931_SNP [dm6]	T	C	5.162e^-4	1	INTRON dac	regulatory region REDfly_CRMs
X	13816054	X_13816054_SNP [dm3] X_13922021_SNP [dm6]	T	A	5.163e^-4	1	INTRON mamo
X	9939656	X_9939656_SNP [dm3] X_10045623_SNP [dm6]	C	T	5.172e^-4	1	DOWNSTREAM Cht6 INTRON Cht6 EXON CR45185 & 1 other
2R	3430762	2R_3430762_SNP [dm3] 2R_7543257_SNP [dm6]	A	G	5.175e^-4	1	INTRON Corin
X	2705403	X_2705403_SNP [dm3] X_2811370_SNP [dm6]	A	G	5.176e^-4	1	DOWNSTREAM CG12498 INTRON kirre
3R	13854079	3R_13854079_SNP [dm3] 3R_18028357_SNP [dm6]	T	C	5.177e^-4	1	INTERGENIC
3R	27214027	3R_27214027_SNP [dm3] 3R_31388305_SNP [dm6]	A	G	5.178e^-4	1	INTRON CG1607	TF binding site mE1_TFBS_cad
2L	10029936	2L_10029936_SNP [dm3] 2L_10029936_SNP [dm6]	T	A	5.184e^-4	1	DOWNSTREAM CG13127 INTERGENIC
3R	23328603	3R_23328603_SNP [dm3] 3R_27502881_SNP [dm6]	G	A	5.194e^-4	1	SYNONYMOUS_CODING CG5402 UPSTREAM CG43139
2R	14358794	2R_14358794_INS [dm3] 2R_18471289_INS [dm6]	C	CA	5.194e^-4	1	INTRON CG30116
2R	14358796	2R_14358796_SNP [dm3] 2R_18471291_SNP [dm6]	C	G	5.194e^-4	1	INTRON CG30116
3R	23614648	3R_23614648_SNP [dm3] 3R_27788926_SNP [dm6]	G	T	5.198e^-4	1	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8820230	3L_8820230_SNP [dm3] 3L_8827130_SNP [dm6]	A	G	5.200e^-4	1	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19012650	3R_19012650_SNP [dm3] 3R_23186928_SNP [dm6]	T	C	5.208e^-4	1	UTR_3_PRIME cnc
3R	16356843	3R_16356843_SNP [dm3] 3R_20531121_SNP [dm6]	A	G	5.222e^-4	1	INTERGENIC
3L	2462382	3L_2462382_SNP [dm3] 3L_2462382_SNP [dm6]	G	T	5.225e^-4	1	UPSTREAM CG45186 INTRON CG45186
3L	7956852	3L_7956852_SNP [dm3] 3L_7963752_SNP [dm6]	C	G	5.230e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24818521	3R_24818521_SNP [dm3] 3R_28992799_SNP [dm6]	G	A	5.248e^-4	1	DOWNSTREAM wat INTERGENIC
2L	10008429	2L_10008429_INS [dm3] 2L_10008429_INS [dm6]	T	AA	5.256e^-4	1	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
2R	12575134	2R_12575134_SNP [dm3] 2R_16687629_SNP [dm6]	A	T	5.257e^-4	1	INTRON CG30463
2L	13143346	2L_13143346_SNP [dm3] 2L_13143346_SNP [dm6]	A	C	5.268e^-4	1	SYNONYMOUS_CODING CG16978 UPSTREAM CG9928
2L	15149742	2L_15149742_SNP [dm3] 2L_15149742_SNP [dm6]	G	A	5.275e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24770231	3R_24770231_SNP [dm3] 3R_28944509_SNP [dm6]	G	A	5.282e^-4	1	INTRON CG14521
2L	17041600	2L_17041600_SNP [dm3] 2L_17041600_SNP [dm6]	C	T	5.283e^-4	1	DOWNSTREAM CR43802 INTERGENIC
2R	12566677	2R_12566677_SNP [dm3] 2R_16679172_SNP [dm6]	G	A	5.292e^-4	1	SYNONYMOUS_CODING CG30463
X	19665320	X_19665320_INS [dm3] X_19771287_INS [dm6]	T	TT	5.293e^-4	1	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	18258331	3L_18258331_SNP [dm3] 3L_18265231_SNP [dm6]	A	T	5.301e^-4	1	INTERGENIC
2L	9440985	2L_9440985_SNP [dm3] 2L_9440985_SNP [dm6]	T	G	5.306e^-4	1	UPSTREAM CG33723 INTRON numb
X	1697713	X_1697713_SNP [dm3] X_1803680_SNP [dm6]	G	A	5.309e^-4	1	INTRON CG42666	TF binding site mE1_TFBS_chinmo
3L	17589734	3L_17589734_SNP [dm3] 3L_17596634_SNP [dm6]	C	A	5.310e^-4	1	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	8217818	3L_8217818_SNP [dm3] 3L_8224718_SNP [dm6]	G	C	5.311e^-4	1	INTERGENIC
3L	3532876	3L_3532876_SNP [dm3] 3L_3532876_SNP [dm6]	T	C	5.313e^-4	1	INTRON Eip63E
3L	3361917	3L_3361917_SNP [dm3] 3L_3361917_SNP [dm6]	C	T	5.315e^-4	1	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3L	5371733	3L_5371733_SNP [dm3] 3L_5378633_SNP [dm6]	C	T	5.318e^-4	1	DOWNSTREAM Ir64a & 1 other INTERGENIC
X	9277734	X_9277734_SNP [dm3] X_9383701_SNP [dm6]	A	C	5.320e^-4	1	INTRON mgl
2L	18944600	2L_18944600_SNP [dm3] 2L_18944600_SNP [dm6]	A	T	5.328e^-4	1	UPSTREAM ssp3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	10747855	3R_10747855_SNP [dm3] 3R_14922133_SNP [dm6]	A	C	5.330e^-4	1	UTR_3_PRIME Sdr
2L	13840000	2L_13840000_SNP [dm3] 2L_13840000_SNP [dm6]	C	A	5.334e^-4	1	UTR_3_PRIME CG33307 DOWNSTREAM CG33307 INTRON CenG1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14911255	3R_14911255_SNP [dm3] 3R_19085533_SNP [dm6]	T	G	5.341e^-4	1	INTRON cdi
2R	10694718	2R_10694718_SNP [dm3] 2R_14807213_SNP [dm6]	T	C	5.342e^-4	1	UPSTREAM kn INTERGENIC	regulatory region REDfly_CRMs
2L	8267234	2L_8267234_SNP [dm3] 2L_8267234_SNP [dm6]	C	A	5.354e^-4	1	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2R	10578233	2R_10578233_SNP [dm3] 2R_14690728_SNP [dm6]	T	A	5.365e^-4	1	INTRON mspo
X	14741961	X_14741961_SNP [dm3] X_14847928_SNP [dm6]	C	G	5.372e^-4	1	SYNONYMOUS_CODING CG9522 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10970656	3L_10970656_SNP [dm3] 3L_10977556_SNP [dm6]	C	T	5.375e^-4	1	DOWNSTREAM CR45745 INTERGENIC
3R	11863470	3R_11863470_SNP [dm3] 3R_16037748_SNP [dm6]	G	A	5.376e^-4	1	INTRON pnr
X	2594736	X_2594736_SNP [dm3] X_2700703_SNP [dm6]	A	G	5.390e^-4	1	UTR_3_PRIME CG2662 DOWNSTREAM Csat
3L	3368264	3L_3368264_SNP [dm3] 3L_3368264_SNP [dm6]	A	T	5.393e^-4	1	DOWNSTREAM kst INTERGENIC
3R	18604230	3R_18604230_SNP [dm3] 3R_22778508_SNP [dm6]	G	A	5.398e^-4	1	INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20662196	2R_20662196_SNP [dm3] 2R_24774673_SNP [dm6]	G	A	5.413e^-4	1	SYNONYMOUS_CODING Eps-15 DOWNSTREAM egg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1207002	2R_1207002_SNP [dm3] 2R_5319497_SNP [dm6]	T	C	5.417e^-4	1	INTRON sxc
3R	25231433	3R_25231433_SNP [dm3] 3R_29405711_SNP [dm6]	G	A	5.418e^-4	1	INTRON Ptp99A	TF binding site mE1_TFBS_inv
3R	26095457	3R_26095457_SNP [dm3] 3R_30269735_SNP [dm6]	T	A	5.426e^-4	1	INTERGENIC
3L	13915548	3L_13915548_SNP [dm3] 3L_13922448_SNP [dm6]	T	A	5.452e^-4	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	19035391	2R_19035391_SNP [dm3] 2R_23147868_SNP [dm6]	T	C	5.471e^-4	1	INTERGENIC
2R	20201597	2R_20201597_SNP [dm3] 2R_24314074_SNP [dm6]	T	C	5.491e^-4	1	DOWNSTREAM betaTub60D INTERGENIC
2L	16541413	2L_16541413_SNP [dm3] 2L_16541413_SNP [dm6]	C	A	5.496e^-4	1	INTERGENIC
X	10285454	X_10285454_SNP [dm3] X_10391421_SNP [dm6]	A	G	5.506e^-4	1	INTRON flw
2L	4956397	2L_4956397_DEL [dm3] 2L_4956397_DEL [dm6]	CAT	C	5.533e^-4	1	INTRON Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10642318	2R_10642318_SNP [dm3] 2R_14754813_SNP [dm6]	C	T	5.542e^-4	1	SYNONYMOUS_CODING CG10151	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9443573	2R_9443573_SNP [dm3] 2R_13556068_SNP [dm6]	T	C	5.563e^-4	1	SYNONYMOUS_CODING link DOWNSTREAM Roe1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9543674	2L_9543674_DEL [dm3] 2L_9543674_DEL [dm6]	TT	T	5.569e^-4	1	UPSTREAM CG13113 DOWNSTREAM Cpr30B INTERGENIC
3L	11508029	3L_11508029_SNP [dm3] 3L_11514929_SNP [dm6]	C	A	5.570e^-4	1	SYNONYMOUS_CODING CG7512
2L	1127003	2L_1127003_SNP [dm3] 2L_1127003_SNP [dm6]	T	G	5.580e^-4	1	INTRON Pino
2L	7586128	2L_7586128_SNP [dm3] 2L_7586128_SNP [dm6]	G	T	5.591e^-4	1	INTERGENIC
2R	12000041	2R_12000041_SNP [dm3] 2R_16112536_SNP [dm6]	A	G	5.593e^-4	1	SPLICE_SITE_REGION Asph INTRON Asph
2L	17067652	2L_17067652_SNP [dm3] 2L_17067652_SNP [dm6]	C	A	5.600e^-4	1	INTERGENIC
X	12675978	X_12675978_SNP [dm3] X_12781945_SNP [dm6]	C	T	5.601e^-4	1	INTRON CG32647
X	15114247	X_15114247_SNP [dm3] X_15220214_SNP [dm6]	G	A	5.607e^-4	1	DOWNSTREAM CG43075 INTERGENIC
3L	3360135	3L_3360135_SNP [dm3] 3L_3360135_SNP [dm6]	T	C	5.607e^-4	1	SYNONYMOUS_CODING kst
X	11142669	X_11142669_SNP [dm3] X_11248636_SNP [dm6]	C	T	5.610e^-4	1	SYNONYMOUS_CODING CG15198 INTRON CG44422
3L	8822837	3L_8822837_SNP [dm3] 3L_8829737_SNP [dm6]	T	A	5.616e^-4	1	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16111662	3R_16111662_SNP [dm3] 3R_20285940_SNP [dm6]	C	A	5.618e^-4	1	INTRON cic
3R	26934495	3R_26934495_SNP [dm3] 3R_31108773_SNP [dm6]	G	A	5.624e^-4	1	SYNONYMOUS_CODING CG11318	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9277517	X_9277517_SNP [dm3] X_9383484_SNP [dm6]	A	G	5.631e^-4	1	INTRON mgl
3R	21676479	3R_21676479_SNP [dm3] 3R_25850757_SNP [dm6]	G	A	5.635e^-4	1	SYNONYMOUS_CODING CG14545 UPSTREAM CG5886	TF binding site BDTNP1_TFBS_dl
2L	17039989	2L_17039989_DEL [dm3] 2L_17039989_DEL [dm6]	CCGT	C	5.638e^-4	1	INTERGENIC
3L	10524360	3L_10524360_SNP [dm3] 3L_10531260_SNP [dm6]	A	T	5.646e^-4	1	INTRON A2bp1
X	9050846	X_9050846_SNP [dm3] X_9156813_SNP [dm6]	T	A	5.648e^-4	1	UPSTREAM His3.3B DOWNSTREAM Ost48 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3L	2596228	3L_2596228_SNP [dm3] 3L_2596228_SNP [dm6]	C	T	5.649e^-4	1	SYNONYMOUS_CODING CG16984 UTR_3_PRIME CG12182 DOWNSTREAM dos & 1 other	TF binding site mE1_TFBS_cad
3R	4026372	3R_4026372_SNP [dm3] 3R_8200650_SNP [dm6]	T	C	5.652e^-4	1	UPSTREAM CR43303 INTERGENIC	TF binding site mE1_TFBS_cad
3L	11291869	3L_11291869_SNP [dm3] 3L_11298769_SNP [dm6]	A	G	5.652e^-4	1	INTERGENIC
2R	18543979	2R_18543979_SNP [dm3] 2R_22656474_SNP [dm6]	G	T	5.653e^-4	1	UPSTREAM CG43326 INTRON CG43325 & 1 other EXON CR45268	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	3580501	3L_3580501_SNP [dm3] 3L_3580501_SNP [dm6]	T	C	5.653e^-4	1	INTRON Eip63E
2R	16374539	2R_16374539_SNP [dm3] 2R_20487034_SNP [dm6]	T	G	5.666e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10355248	3L_10355248_SNP [dm3] 3L_10362148_SNP [dm6]	G	A	5.677e^-4	1	EXON CR44327	TF binding site BDTNP1_TFBS_dl
X	8429372	X_8429372_SNP [dm3] X_8535339_SNP [dm6]	G	A	5.678e^-4	1	INTRON Nrg
2L	9360957	2L_9360957_SNP [dm3] 2L_9360957_SNP [dm6]	T	G	5.714e^-4	1	INTERGENIC
X	9277727	X_9277727_SNP [dm3] X_9383694_SNP [dm6]	A	G	5.716e^-4	1	INTRON mgl
2L	8255354	2L_8255354_SNP [dm3] 2L_8255354_SNP [dm6]	C	A	5.717e^-4	1	INTRON CG8086
2L	1956480	2L_1956480_INS [dm3] 2L_1956480_INS [dm6]	C	TT	5.720e^-4	1	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	16658019	3L_16658019_SNP [dm3] 3L_16664919_SNP [dm6]	A	T	5.738e^-4	1	INTRON Galphaf
2R	20772227	2R_20772227_SNP [dm3] 2R_24884704_SNP [dm6]	A	G	5.744e^-4	1	SYNONYMOUS_CODING NKAIN DOWNSTREAM NKAIN INTRON NKAIN
2L	16519825	2L_16519825_SNP [dm3] 2L_16519825_SNP [dm6]	T	A	5.750e^-4	1	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15206607	2L_15206607_SNP [dm3] 2L_15206607_SNP [dm6]	T	C	5.761e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11494630	2L_11494630_SNP [dm3] 2L_11494630_SNP [dm6]	A	C	5.763e^-4	1	INTERGENIC
3R	26820382	3R_26820382_SNP [dm3] 3R_30994660_SNP [dm6]	A	T	5.771e^-4	1	INTRON 5-HT7
2R	16326431	2R_16326431_SNP [dm3] 2R_20438926_SNP [dm6]	T	A	5.783e^-4	1	INTRON CG12484
2R	12469681	2R_12469681_SNP [dm3] 2R_16582176_SNP [dm6]	C	T	5.784e^-4	1	INTRON Cdk4 EXON CR44375	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	18667131	2R_18667131_SNP [dm3] 2R_22779626_SNP [dm6]	C	A	5.785e^-4	1	INTRON CG42260
3L	3368276	3L_3368276_INS [dm3] 3L_3368276_INS [dm6]	A	AGCAA	5.787e^-4	1	DOWNSTREAM kst INTERGENIC
2R	12633260	2R_12633260_SNP [dm3] 2R_16745755_SNP [dm6]	C	T	5.791e^-4	1	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
2L	5672228	2L_5672228_SNP [dm3] 2L_5672228_SNP [dm6]	G	T	5.791e^-4	1	INTERGENIC
2L	16860818	2L_16860818_SNP [dm3] 2L_16860818_SNP [dm6]	G	A	5.793e^-4	1	UPSTREAM CR43858 INTRON CG6012	TF binding site BDTNP1_TFBS_twi
3L	3277008	3L_3277008_SNP [dm3] 3L_3277008_SNP [dm6]	T	A	5.806e^-4	1	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	19629216	3L_19629216_SNP [dm3] 3L_19636116_SNP [dm6]	C	T	5.808e^-4	1	UPSTREAM wnd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	13311685	3L_13311685_SNP [dm3] 3L_13318585_SNP [dm6]	A	T	5.816e^-4	1	INTERGENIC
3L	14249567	3L_14249567_SNP [dm3] 3L_14256467_SNP [dm6]	G	T	5.823e^-4	1	INTERGENIC
2R	16339220	2R_16339220_SNP [dm3] 2R_20451715_SNP [dm6]	C	G	5.824e^-4	1	INTRON CG12484
3L	16708655	3L_16708655_SNP [dm3] 3L_16715555_SNP [dm6]	G	A	5.844e^-4	1	INTRON Dab
2R	10578290	2R_10578290_SNP [dm3] 2R_14690785_SNP [dm6]	G	C	5.869e^-4	1	INTRON mspo
X	10620105	X_10620105_SNP [dm3] X_10726072_SNP [dm6]	C	T	5.870e^-4	1	INTRON CG32676	TF binding site BDTNP1_TFBS_hb
X	14306619	X_14306619_SNP [dm3] X_14412586_SNP [dm6]	A	C	5.870e^-4	1	INTRON dpr8
3L	897385	3L_897385_SNP [dm3] 3L_897385_SNP [dm6]	G	C	5.875e^-4	1	UTR_5_PRIME CG34057 DOWNSTREAM CG34056
3L	9688504	3L_9688504_SNP [dm3] 3L_9695404_SNP [dm6]	G	A	5.882e^-4	1	UTR_5_PRIME CG6767 UPSTREAM CG6767 INTRON CG6767 EXON CR45121	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11000310	2L_11000310_SNP [dm3] 2L_11000310_SNP [dm6]	T	G	5.883e^-4	1	NON_SYNONYMOUS_CODING aub
3R	25376976	3R_25376976_SNP [dm3] 3R_29551254_SNP [dm6]	G	C	5.887e^-4	1	INTERGENIC
X	980011	X_980011_SNP [dm3] X_1085978_SNP [dm6]	T	C	5.887e^-4	1	INTRON CR44779 & 1 other EXON CR44779
3L	8206414	3L_8206414_SNP [dm3] 3L_8213314_SNP [dm6]	G	A	5.888e^-4	1	NON_SYNONYMOUS_CODING CG8006	TF binding site mE1_TFBS_cad
2R	15983331	2R_15983331_SNP [dm3] 2R_20095826_SNP [dm6]	G	A	5.896e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8727293	3L_8727293_SNP [dm3] 3L_8734193_SNP [dm6]	C	A	5.896e^-4	1	INTRON Prm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7443026	2L_7443026_SNP [dm3] 2L_7443026_SNP [dm6]	C	T	5.908e^-4	1	UPSTREAM CG5973 INTRON CG5973
3R	6651940	3R_6651940_SNP [dm3] 3R_10826218_SNP [dm6]	A	G	5.909e^-4	1	UPSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19282955	X_19282955_SNP [dm3] X_19388922_SNP [dm6]	G	A	5.909e^-4	1	INTRON kek5
2R	19616546	2R_19616546_INS [dm3] 2R_23729023_INS [dm6]	A	ATTGTTATGT	5.910e^-4	1	INTRON Sesn
X	16609445	X_16609445_DEL [dm3] X_16715412_DEL [dm6]	ATCCATACA	A	5.913e^-4	1	INTRON CG34325
2L	11427789	2L_11427789_INS [dm3] 2L_11427789_INS [dm6]	A	AA	5.923e^-4	1	INTERGENIC
2L	19694898	2L_19694898_SNP [dm3] 2L_19694898_SNP [dm6]	A	G	5.925e^-4	1	INTRON Lar
3L	19631276	3L_19631276_SNP [dm3] 3L_19638176_SNP [dm6]	G	T	5.932e^-4	1	UTR_3_PRIME CG8786
2R	12933023	2R_12933023_SNP [dm3] 2R_17045518_SNP [dm6]	C	T	5.940e^-4	1	NON_SYNONYMOUS_CODING CG9640 DOWNSTREAM RhoGEF2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22058124	X_22058124_SNP [dm3] X_22656288_SNP [dm6]	A	T	5.940e^-4	1	INTERGENIC
3L	18552888	3L_18552888_INS [dm3] 3L_18559788_INS [dm6]	A	ACAAAC	5.943e^-4	1	UPSTREAM AstC-R1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5323224	X_5323224_DEL [dm3] X_5429191_DEL [dm6]	AAAGTTCCAAA...	A	5.945e^-4	1	UPSTREAM CG15784 DOWNSTREAM CG16756 EXON CR45517
2R	20216261	2R_20216261_SNP [dm3] 2R_24328738_SNP [dm6]	C	G	5.947e^-4	1	UPSTREAM CR44810 INTRON CR44810
3R	24818523	3R_24818523_SNP [dm3] 3R_28992801_SNP [dm6]	C	G	5.960e^-4	1	DOWNSTREAM wat INTERGENIC
2R	10643887	2R_10643887_SNP [dm3] 2R_14756382_SNP [dm6]	G	A	5.961e^-4	1	UPSTREAM CG12859 & 1 other DOWNSTREAM Trs31 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16867707	2L_16867707_SNP [dm3] 2L_16867707_SNP [dm6]	C	A	5.968e^-4	1	INTERGENIC
3R	15973644	3R_15973644_SNP [dm3] 3R_20147922_SNP [dm6]	C	T	5.969e^-4	1	INTERGENIC
3R	14537363	3R_14537363_SNP [dm3] 3R_18711641_SNP [dm6]	A	G	5.980e^-4	1	INTRON VAChT & 1 other
2L	8252265	2L_8252265_SNP [dm3] 2L_8252265_SNP [dm6]	G	T	5.983e^-4	1	SYNONYMOUS_CODING CG8086
3L	5929570	3L_5929570_SNP [dm3] 3L_5936470_SNP [dm6]	A	G	6.001e^-4	1	INTRON CG33993
3L	5929569	3L_5929569_SNP [dm3] 3L_5936469_SNP [dm6]	A	G	6.012e^-4	1	INTRON CG33993
X	6470587	X_6470587_SNP [dm3] X_6576554_SNP [dm6]	C	T	6.012e^-4	1	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	12257612	2R_12257612_SNP [dm3] 2R_16370107_SNP [dm6]	A	C	6.014e^-4	1	INTERGENIC
2L	16676335	2L_16676335_SNP [dm3] 2L_16676335_SNP [dm6]	G	T	6.018e^-4	1	UPSTREAM her INTRON Trpgamma
3L	6903546	3L_6903546_SNP [dm3] 3L_6910446_SNP [dm6]	T	C	6.020e^-4	1	INTERGENIC
3R	16932444	3R_16932444_SNP [dm3] 3R_21106722_SNP [dm6]	G	A	6.023e^-4	1	SYNONYMOUS_CODING Sec15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15147159	2L_15147159_SNP [dm3] 2L_15147159_SNP [dm6]	G	C	6.041e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	514823	2L_514823_SNP [dm3] 2L_514823_SNP [dm6]	G	A	6.055e^-4	1	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	16792477	2R_16792477_SNP [dm3] 2R_20904972_SNP [dm6]	C	T	6.058e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11838578	2R_11838578_SNP [dm3] 2R_15951073_SNP [dm6]	C	T	6.066e^-4	1	UTR_5_PRIME Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck
2L	11535517	2L_11535517_SNP [dm3] 2L_11535517_SNP [dm6]	G	T	6.067e^-4	1	UPSTREAM CR42743 & 1 other INTERGENIC
3L	2461505	3L_2461505_DEL [dm3] 3L_2461505_DEL [dm6]	GACTAA	G	6.071e^-4	1	INTRON CG45186
2R	6269794	2R_6269794_SNP [dm3] 2R_10382289_SNP [dm6]	G	A	6.077e^-4	1	INTRON CG42732	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
3L	18128079	3L_18128079_SNP [dm3] 3L_18134979_SNP [dm6]	T	C	6.083e^-4	1	DOWNSTREAM CR44669 INTERGENIC
3R	14847239	3R_14847239_SNP [dm3] 3R_19021517_SNP [dm6]	G	A	6.097e^-4	1	NON_SYNONYMOUS_CODING gukh UTR_3_PRIME gukh DOWNSTREAM CG6005	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15165657	X_15165657_SNP [dm3] X_15271624_SNP [dm6]	G	T	6.102e^-4	1	SYNONYMOUS_CODING CG9106
3L	13311774	3L_13311774_SNP [dm3] 3L_13318674_SNP [dm6]	T	C	6.109e^-4	1	INTERGENIC
2L	7533746	2L_7533746_SNP [dm3] 2L_7533746_SNP [dm6]	A	G	6.137e^-4	1	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	22495117	3R_22495117_SNP [dm3] 3R_26669395_SNP [dm6]	T	C	6.138e^-4	1	INTRON beat-VII
3L	1769755	3L_1769755_SNP [dm3] 3L_1769755_SNP [dm6]	G	A	6.147e^-4	1	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14955245	3R_14955245_SNP [dm3] 3R_19129523_SNP [dm6]	C	T	6.149e^-4	1	NON_SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_chinmo
3R	3222599	3R_3222599_SNP [dm3] 3R_7396877_SNP [dm6]	A	C	6.153e^-4	1	INTERGENIC
2L	16581639	2L_16581639_SNP [dm3] 2L_16581639_SNP [dm6]	A	T	6.162e^-4	1	INTRON CG42389
3R	17453093	3R_17453093_SNP [dm3] 3R_21627371_SNP [dm6]	T	C	6.170e^-4	1	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17453096	3R_17453096_SNP [dm3] 3R_21627374_SNP [dm6]	T	A	6.170e^-4	1	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17453119	3R_17453119_INS [dm3] 3R_21627397_INS [dm6]	C	TT	6.170e^-4	1	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17453176	3R_17453176_SNP [dm3] 3R_21627454_SNP [dm6]	T	C	6.170e^-4	1	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6214523	2R_6214523_SNP [dm3] 2R_10327018_SNP [dm6]	T	G	6.177e^-4	1	INTRON CG42732
2L	16860815	2L_16860815_DEL [dm3] 2L_16860815_DEL [dm6]	AA	A	6.182e^-4	1	UPSTREAM CR43858 INTRON CG6012	TF binding site BDTNP1_TFBS_twi
3L	18493147	3L_18493147_SNP [dm3] 3L_18500047_SNP [dm6]	T	A	6.187e^-4	1	INTRON AstC-R2
3R	25841706	3R_25841706_SNP [dm3] 3R_30015984_SNP [dm6]	C	A	6.192e^-4	1	UTR_3_PRIME Mgat2 UPSTREAM CG7920	TF binding site mE1_TFBS_cad

By genomic position
Variant impact
Gene name

Cuticul_7_C29_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results