DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.544e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01282
In_3R_K	7.446e-07

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	11.7412	0.0028
In_3R_K	16.5098	0.0003

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2034 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	12951597	2L_12951597_SNP [dm3] 2L_12951597_SNP [dm6]	C	A	8.813e^-7	0.734	INTERGENIC
2R	8092915	2R_8092915_SNP [dm3] 2R_12205410_SNP [dm6]	C	G	1.542e^-6	0.734	UPSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9179925	X_9179925_SNP [dm3] X_9285892_SNP [dm6]	A	C	1.602e^-6	0.734	UTR_5_PRIME lz
3R	5640267	3R_5640267_SNP [dm3] 3R_9814545_SNP [dm6]	G	C	2.004e^-6	0.734	NON_SYNONYMOUS_CODING eloF UPSTREAM CR44035 DOWNSTREAM CG8534	TF binding site mE1_TFBS_sens
2R	8092581	2R_8092581_SNP [dm3] 2R_12205076_SNP [dm6]	C	T	2.163e^-6	0.734	INTERGENIC
2R	8109725	2R_8109725_SNP [dm3] 2R_12222220_SNP [dm6]	G	C	2.818e^-6	0.734	INTERGENIC
3L	5673312	3L_5673312_SNP [dm3] 3L_5680212_SNP [dm6]	G	A	3.401e^-6	0.734	INTRON sif
2L	12951599	2L_12951599_SNP [dm3] 2L_12951599_SNP [dm6]	A	G	3.508e^-6	0.734	INTERGENIC
3L	5673294	3L_5673294_SNP [dm3] 3L_5680194_SNP [dm6]	G	A	3.898e^-6	0.734	INTRON sif
3L	5673273	3L_5673273_SNP [dm3] 3L_5680173_SNP [dm6]	G	T	4.803e^-6	0.734	INTRON sif
3R	14723973	3R_14723973_SNP [dm3] 3R_18898251_SNP [dm6]	G	A	4.863e^-6	0.734	UTR_5_PRIME CG14297
3R	5640310	3R_5640310_SNP [dm3] 3R_9814588_SNP [dm6]	C	A	5.101e^-6	0.734	SYNONYMOUS_CODING eloF UPSTREAM CR44035 DOWNSTREAM CG8534
2R	8092572	2R_8092572_SNP [dm3] 2R_12205067_SNP [dm6]	C	T	5.405e^-6	0.734	INTERGENIC
2R	8383213	2R_8383213_SNP [dm3] 2R_12495708_SNP [dm6]	A	T	5.478e^-6	0.734	UTR_5_PRIME s-cup INTRON fdl
3L	16975630	3L_16975630_SNP [dm3] 3L_16982530_SNP [dm6]	T	A	6.117e^-6	0.765	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
3R	3801353	3R_3801353_SNP [dm3] 3R_7975631_SNP [dm6]	T	C	6.985e^-6	0.787	SYNONYMOUS_CODING CD98hc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18286355	3R_18286355_SNP [dm3] 3R_22460633_SNP [dm6]	T	G	8.609e^-6	0.787	UTR_3_PRIME CG34376 DOWNSTREAM Rpn7
3R	26914130	3R_26914130_SNP [dm3] 3R_31088408_SNP [dm6]	A	C	9.206e^-6	0.787	INTERGENIC
X	8736742	X_8736742_SNP [dm3] X_8842709_SNP [dm6]	A	T	9.474e^-6	0.787	INTRON CG12075
3R	14670959	3R_14670959_SNP [dm3] 3R_18845237_SNP [dm6]	G	T	9.634e^-6	0.787	INTRON CG18208
3L	16975611	3L_16975611_SNP [dm3] 3L_16982511_SNP [dm6]	G	C	1.008e^-5	0.787	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
2R	19387091	2R_19387091_SNP [dm3] 2R_23499568_SNP [dm6]	A	G	1.088e^-5	0.787	UPSTREAM CG13558 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	8106248	2R_8106248_INS [dm3] 2R_12218743_INS [dm6]	G	GATG	1.145e^-5	0.787	INTERGENIC
2R	18245408	2R_18245408_SNP [dm3] 2R_22357903_SNP [dm6]	A	G	1.155e^-5	0.787	INTRON Liprin-gamma	transposable element FlyBase
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	1.171e^-5	0.787	INTERGENIC
3R	23499267	3R_23499267_SNP [dm3] 3R_27673545_SNP [dm6]	C	A	1.252e^-5	0.787	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8111200	3R_8111200_SNP [dm3] 3R_12285478_SNP [dm6]	T	A	1.330e^-5	0.787	INTRON svp
3L	16972293	3L_16972293_SNP [dm3] 3L_16979193_SNP [dm6]	G	A	1.502e^-5	0.787	INTRON Exn
3L	12184966	3L_12184966_SNP [dm3] 3L_12191866_SNP [dm6]	G	T	1.530e^-5	0.787	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
2R	20263325	2R_20263325_SNP [dm3] 2R_24375802_SNP [dm6]	T	C	1.597e^-5	0.787	INTRON bs	TF binding site mE1_TFBS_chinmo
3L	16972296	3L_16972296_SNP [dm3] 3L_16979196_SNP [dm6]	A	T	1.630e^-5	0.787	INTRON Exn
2R	19664071	2R_19664071_SNP [dm3] 2R_23776548_SNP [dm6]	T	A	1.668e^-5	0.787	INTRON CG9850
X	5787789	X_5787789_SNP [dm3] X_5893756_SNP [dm6]	C	T	1.713e^-5	0.787	INTRON CR45668	TF binding site mE1_TFBS_zfh1
2R	8109757	2R_8109757_SNP [dm3] 2R_12222252_SNP [dm6]	A	C	1.790e^-5	0.787	INTERGENIC
2L	1503746	2L_1503746_SNP [dm3] 2L_1503746_SNP [dm6]	G	A	1.832e^-5	0.787	UPSTREAM CG7420 EXON CR44064	TF binding site BDTNP1_TFBS_dl
3L	3020274	3L_3020274_SNP [dm3] 3L_3020274_SNP [dm6]	G	T	1.923e^-5	0.787	INTERGENIC
2R	19666630	2R_19666630_SNP [dm3] 2R_23779107_SNP [dm6]	G	T	1.931e^-5	0.787	NON_SYNONYMOUS_CODING CG9850
2R	19665804	2R_19665804_SNP [dm3] 2R_23778281_SNP [dm6]	G	A	2.066e^-5	0.787	INTRON CG9850
2L	1103147	2L_1103147_SNP [dm3] 2L_1103147_SNP [dm6]	C	A	2.093e^-5	0.787	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
3L	455234	3L_455234_SNP [dm3] 3L_455234_SNP [dm6]	C	G	2.112e^-5	0.787	INTRON klar
2R	19661352	2R_19661352_INS [dm3] 2R_23773829_INS [dm6]	T	TGCT	2.113e^-5	0.787	INTRON CG9850
3R	25136442	3R_25136442_SNP [dm3] 3R_29310720_SNP [dm6]	A	G	2.129e^-5	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12185514	3L_12185514_SNP [dm3] 3L_12192414_SNP [dm6]	G	T	2.176e^-5	0.787	NON_SYNONYMOUS_CODING Est-P UTR_3_PRIME thoc6 DOWNSTREAM thoc6
2R	8112845	2R_8112845_SNP [dm3] 2R_12225340_SNP [dm6]	T	C	2.190e^-5	0.787	INTRON CG8854
2R	19664210	2R_19664210_SNP [dm3] 2R_23776687_SNP [dm6]	A	G	2.285e^-5	0.787	INTRON CG9850
3L	16972299	3L_16972299_SNP [dm3] 3L_16979199_SNP [dm6]	G	C	2.313e^-5	0.787	INTRON Exn
2R	11735897	2R_11735897_SNP [dm3] 2R_15848392_SNP [dm6]	T	A	2.321e^-5	0.787	UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
X	13606673	X_13606673_SNP [dm3] X_13712640_SNP [dm6]	G	T	2.362e^-5	0.787	SYNONYMOUS_CODING NnaD INTRON CG9940
2R	11735901	2R_11735901_SNP [dm3] 2R_15848396_SNP [dm6]	T	C	2.424e^-5	0.787	UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
X	6439783	X_6439783_SNP [dm3] X_6545750_SNP [dm6]	G	T	2.448e^-5	0.787	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8112797	2R_8112797_SNP [dm3] 2R_12225292_SNP [dm6]	T	A	2.478e^-5	0.787	INTRON CG8854
2R	20263307	2R_20263307_SNP [dm3] 2R_24375784_SNP [dm6]	C	T	2.485e^-5	0.787	INTRON bs	TF binding site mE1_TFBS_chinmo
2R	20263344	2R_20263344_SNP [dm3] 2R_24375821_SNP [dm6]	C	A	2.485e^-5	0.787	INTRON bs	TF binding site mE1_TFBS_chinmo
2R	8109912	2R_8109912_SNP [dm3] 2R_12222407_SNP [dm6]	C	A	2.559e^-5	0.787	INTERGENIC
3L	11002847	3L_11002847_SNP [dm3] 3L_11009747_SNP [dm6]	T	C	2.626e^-5	0.787	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	11735874	2R_11735874_SNP [dm3] 2R_15848369_SNP [dm6]	C	A	2.644e^-5	0.787	UPSTREAM tun INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
X	13606664	X_13606664_SNP [dm3] X_13712631_SNP [dm6]	G	T	2.652e^-5	0.787	SPLICE_SITE_REGION NnaD SYNONYMOUS_CODING NnaD INTRON CG9940
3L	4168404	3L_4168404_SNP [dm3] 3L_4168404_SNP [dm6]	C	A	2.656e^-5	0.787	UPSTREAM mas EXON CR44529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4168407	3L_4168407_SNP [dm3] 3L_4168407_SNP [dm6]	A	G	2.656e^-5	0.787	UPSTREAM mas EXON CR44529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	8092783	2R_8092783_SNP [dm3] 2R_12205278_SNP [dm6]	G	T	2.660e^-5	0.787	UPSTREAM CR45276 INTERGENIC
2R	8112843	2R_8112843_SNP [dm3] 2R_12225338_SNP [dm6]	T	C	2.661e^-5	0.787	INTRON CG8854
2R	20263207	2R_20263207_SNP [dm3] 2R_24375684_SNP [dm6]	C	A	2.678e^-5	0.787	SYNONYMOUS_CODING bs	TF binding site mE1_TFBS_chinmo
3R	25655818	3R_25655818_SNP [dm3] 3R_29830096_SNP [dm6]	C	G	2.689e^-5	0.787	INTRON Atg16	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7766736	3R_7766736_SNP [dm3] 3R_11941014_SNP [dm6]	A	C	2.770e^-5	0.787	INTRON Cad87A
2R	8135220	2R_8135220_SNP [dm3] 2R_12247715_SNP [dm6]	T	G	2.805e^-5	0.787	UPSTREAM CR44315 INTERGENIC	transposable element FlyBase
X	6439781	X_6439781_SNP [dm3] X_6545748_SNP [dm6]	G	C	2.847e^-5	0.787	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16260408	2L_16260408_SNP [dm3] 2L_16260408_SNP [dm6]	G	A	2.865e^-5	0.787	SYNONYMOUS_CODING twe DOWNSTREAM EndoGI	TF binding site mE1_TFBS_cad
2R	8132014	2R_8132014_SNP [dm3] 2R_12244509_SNP [dm6]	C	T	2.918e^-5	0.787	NON_SYNONYMOUS_CODING CG43244
3L	11042828	3L_11042828_SNP [dm3] 3L_11049728_SNP [dm6]	C	T	2.922e^-5	0.787	UPSTREAM CG43693 & 1 other INTRON CG43693
3L	12184935	3L_12184935_SNP [dm3] 3L_12191835_SNP [dm6]	T	A	2.942e^-5	0.787	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
3L	5707278	3L_5707278_SNP [dm3] 3L_5714178_SNP [dm6]	C	G	2.989e^-5	0.787	DOWNSTREAM CG44521 INTRON sif
2R	18204852	2R_18204852_DEL [dm3] 2R_22317347_DEL [dm6]	TT	T	3.091e^-5	0.787	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12185525	3L_12185525_SNP [dm3] 3L_12192425_SNP [dm6]	C	T	3.105e^-5	0.787	SPLICE_SITE_ACCEPTOR thoc6 SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6 INTRON thoc6
2R	8135248	2R_8135248_SNP [dm3] 2R_12247743_SNP [dm6]	G	C	3.170e^-5	0.787	UPSTREAM CR44315 INTERGENIC	transposable element FlyBase
2R	8119561	2R_8119561_SNP [dm3] 2R_12232056_SNP [dm6]	C	T	3.245e^-5	0.787	INTERGENIC
3L	12185838	3L_12185838_SNP [dm3] 3L_12192738_SNP [dm6]	G	A	3.255e^-5	0.787	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P
3L	5707266	3L_5707266_SNP [dm3] 3L_5714166_SNP [dm6]	T	G	3.315e^-5	0.787	DOWNSTREAM CG44521 INTRON sif
2R	8113408	2R_8113408_SNP [dm3] 2R_12225903_SNP [dm6]	G	T	3.370e^-5	0.787	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	20263303	2R_20263303_SNP [dm3] 2R_24375780_SNP [dm6]	A	G	3.375e^-5	0.787	INTRON bs	TF binding site mE1_TFBS_chinmo
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	3.397e^-5	0.787	INTRON Cad87A
2R	19669970	2R_19669970_SNP [dm3] 2R_23782447_SNP [dm6]	T	C	3.457e^-5	0.787	INTRON CG9850	TF binding site mE1_TFBS_chinmo
3L	6129617	3L_6129617_SNP [dm3] 3L_6136517_SNP [dm6]	C	T	3.463e^-5	0.787	NON_SYNONYMOUS_CODING Lcp65Af
3L	12185769	3L_12185769_SNP [dm3] 3L_12192669_SNP [dm6]	A	T	3.531e^-5	0.787	NON_SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P
3R	9721237	3R_9721237_SNP [dm3] 3R_13895515_SNP [dm6]	T	A	3.559e^-5	0.787	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17654512	X_17654512_SNP [dm3] X_17760479_SNP [dm6]	C	T	3.710e^-5	0.787	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18982358	3R_18982358_SNP [dm3] 3R_23156636_SNP [dm6]	T	A	3.724e^-5	0.787	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	17654508	X_17654508_SNP [dm3] X_17760475_SNP [dm6]	G	T	3.798e^-5	0.787	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16972288	3L_16972288_SNP [dm3] 3L_16979188_SNP [dm6]	T	G	3.928e^-5	0.787	INTRON Exn
2R	8116777	2R_8116777_SNP [dm3] 2R_12229272_SNP [dm6]	C	A	3.937e^-5	0.787	UTR_5_PRIME CG8854
3L	11002850	3L_11002850_SNP [dm3] 3L_11009750_SNP [dm6]	C	T	3.966e^-5	0.787	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	18982520	3R_18982520_SNP [dm3] 3R_23156798_SNP [dm6]	A	G	4.008e^-5	0.787	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4681170	2L_4681170_SNP [dm3] 2L_4681170_SNP [dm6]	T	C	4.058e^-5	0.787	INTERGENIC
2R	8077706	2R_8077706_SNP [dm3] 2R_12190201_SNP [dm6]	G	T	4.083e^-5	0.787	SYNONYMOUS_CODING Cyp6g2 UPSTREAM Cyp6t3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12738525	3R_12738525_DEL [dm3] 3R_16912803_DEL [dm6]	AA	A	4.172e^-5	0.787	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
3L	16972320	3L_16972320_SNP [dm3] 3L_16979220_SNP [dm6]	A	G	4.174e^-5	0.787	INTRON Exn
2R	8114368	2R_8114368_SNP [dm3] 2R_12226863_SNP [dm6]	T	C	4.234e^-5	0.787	UPSTREAM CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
X	3958470	X_3958470_SNP [dm3] X_4064437_SNP [dm6]	G	T	4.241e^-5	0.787	INTERGENIC
2R	8112670	2R_8112670_SNP [dm3] 2R_12225165_SNP [dm6]	C	T	4.265e^-5	0.787	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
2L	2304603	2L_2304603_SNP [dm3] 2L_2304603_SNP [dm6]	C	T	4.282e^-5	0.787	INTERGENIC
3L	20386809	3L_20386809_SNP [dm3] 3L_20393709_SNP [dm6]	C	G	4.285e^-5	0.787	UPSTREAM CG33969 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13107418	3L_13107418_SNP [dm3] 3L_13114318_SNP [dm6]	G	T	4.292e^-5	0.787	UTR_5_PRIME trn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	8096002	2R_8096002_SNP [dm3] 2R_12208497_SNP [dm6]	C	A	4.401e^-5	0.787	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2R	8089970	2R_8089970_SNP [dm3] 2R_12202465_SNP [dm6]	A	G	4.426e^-5	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12030703	2R_12030703_SNP [dm3] 2R_16143198_SNP [dm6]	G	A	4.436e^-5	0.787	UTR_5_PRIME Aats-cys DOWNSTREAM CG30094	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8115272	2R_8115272_SNP [dm3] 2R_12227767_SNP [dm6]	T	C	4.518e^-5	0.787	UPSTREAM CG8854 INTRON CG8854
3L	16972323	3L_16972323_SNP [dm3] 3L_16979223_SNP [dm6]	T	C	4.526e^-5	0.787	INTRON Exn
3L	13188602	3L_13188602_SNP [dm3] 3L_13195502_SNP [dm6]	A	G	4.535e^-5	0.787	INTERGENIC
X	12837853	X_12837853_SNP [dm3] X_12943820_SNP [dm6]	T	C	4.553e^-5	0.787	INTRON fne
2R	8113034	2R_8113034_DEL [dm3] 2R_12225529_DEL [dm6]	TGCGTAAA	T	4.586e^-5	0.787	INTRON CG8854
3L	5673011	3L_5673011_SNP [dm3] 3L_5679911_SNP [dm6]	T	C	4.617e^-5	0.787	INTRON sif
2R	8139251	2R_8139251_SNP [dm3] 2R_12251746_SNP [dm6]	G	C	4.679e^-5	0.787	INTERGENIC
3L	16972171	3L_16972171_SNP [dm3] 3L_16979071_SNP [dm6]	T	C	4.698e^-5	0.787	INTRON Exn
3R	9321083	3R_9321083_SNP [dm3] 3R_13495361_SNP [dm6]	C	G	4.745e^-5	0.788	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12185848	3L_12185848_SNP [dm3] 3L_12192748_SNP [dm6]	T	C	4.862e^-5	0.794	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site mE1_TFBS_sens
2L	14493160	2L_14493160_SNP [dm3] 2L_14493160_SNP [dm6]	A	G	4.867e^-5	0.794	SYNONYMOUS_STOP noc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18968003	2R_18968003_SNP [dm3] 2R_23080480_SNP [dm6]	A	T	4.923e^-5	0.796	UPSTREAM Gr59a & 1 other INTERGENIC
2L	8700154	2L_8700154_SNP [dm3] 2L_8700154_SNP [dm6]	C	G	5.035e^-5	0.801	UPSTREAM Hnf4 INTRON Hnf4
2R	8092527	2R_8092527_SNP [dm3] 2R_12205022_SNP [dm6]	C	T	5.052e^-5	0.801	INTERGENIC
3L	16972313	3L_16972313_SNP [dm3] 3L_16979213_SNP [dm6]	A	G	5.140e^-5	0.801	INTRON Exn
2R	8092786	2R_8092786_SNP [dm3] 2R_12205281_SNP [dm6]	C	T	5.154e^-5	0.801	UPSTREAM CR45276 INTERGENIC
3R	14670929	3R_14670929_SNP [dm3] 3R_18845207_SNP [dm6]	G	T	5.237e^-5	0.801	INTRON CG18208
3L	20386965	3L_20386965_SNP [dm3] 3L_20393865_SNP [dm6]	A	G	5.247e^-5	0.801	UPSTREAM CG33969 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14670925	3R_14670925_SNP [dm3] 3R_18845203_SNP [dm6]	C	A	5.253e^-5	0.801	INTRON CG18208
3R	26936801	3R_26936801_SNP [dm3] 3R_31111079_SNP [dm6]	G	A	5.377e^-5	0.806	INTERGENIC
3L	16972318	3L_16972318_SNP [dm3] 3L_16979218_SNP [dm6]	A	T	5.384e^-5	0.806	INTRON Exn
3R	24700490	3R_24700490_SNP [dm3] 3R_28874768_SNP [dm6]	C	T	5.458e^-5	0.806	SYNONYMOUS_CODING CG14529 UPSTREAM CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16351460	3R_16351460_SNP [dm3] 3R_20525738_SNP [dm6]	C	T	5.473e^-5	0.806	INTERGENIC
2R	20262404	2R_20262404_SNP [dm3] 2R_24374881_SNP [dm6]	G	T	5.585e^-5	0.806	DOWNSTREAM tRNA:N5:60C INTRON bs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6933428	3L_6933428_SNP [dm3] 3L_6940328_SNP [dm6]	A	T	5.596e^-5	0.806	UPSTREAM CR45412 INTERGENIC
2R	8096130	2R_8096130_SNP [dm3] 2R_12208625_SNP [dm6]	G	A	5.601e^-5	0.806	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8109780	2R_8109780_SNP [dm3] 2R_12222275_SNP [dm6]	G	A	5.626e^-5	0.806	INTERGENIC
3R	25098928	3R_25098928_INS [dm3] 3R_29273206_INS [dm6]	A	AGGTAAATAGTA...	5.869e^-5	0.82	INTERGENIC	regulatory region REDfly_CRMs
2R	8096106	2R_8096106_SNP [dm3] 2R_12208601_SNP [dm6]	A	G	5.877e^-5	0.82	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8092784	2R_8092784_INS [dm3] 2R_12205279_INS [dm6]	A	AT	5.881e^-5	0.82	UPSTREAM CR45276 INTERGENIC
2L	11298210	2L_11298210_SNP [dm3] 2L_11298210_SNP [dm6]	G	A	5.919e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	6439773	X_6439773_SNP [dm3] X_6545740_SNP [dm6]	G	A	5.963e^-5	0.82	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19669974	2R_19669974_SNP [dm3] 2R_23782451_SNP [dm6]	C	T	6.025e^-5	0.82	INTRON CG9850	TF binding site mE1_TFBS_chinmo
3R	11649695	3R_11649695_SNP [dm3] 3R_15823973_SNP [dm6]	A	G	6.107e^-5	0.82	UTR_3_PRIME alpha-Man-IIb & 1 other DOWNSTREAM rec
2R	3911287	2R_3911287_SNP [dm3] 2R_8023782_SNP [dm6]	C	G	6.246e^-5	0.82	EXON CR45267	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	8114468	2R_8114468_SNP [dm3] 2R_12226963_SNP [dm6]	C	T	6.290e^-5	0.82	UPSTREAM CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
3L	5673127	3L_5673127_SNP [dm3] 3L_5680027_SNP [dm6]	T	C	6.313e^-5	0.82	INTRON sif
X	10210507	X_10210507_SNP [dm3] X_10316474_SNP [dm6]	T	G	6.330e^-5	0.82	INTRON alpha-Man-I
2R	8092781	2R_8092781_SNP [dm3] 2R_12205276_SNP [dm6]	C	T	6.366e^-5	0.82	UPSTREAM CR45276 INTERGENIC
2L	12471144	2L_12471144_SNP [dm3] 2L_12471144_SNP [dm6]	G	A	6.444e^-5	0.82	INTRON bun
2L	12515452	2L_12515452_SNP [dm3] 2L_12515452_SNP [dm6]	A	C	6.458e^-5	0.82	INTRON bun
2R	20262834	2R_20262834_DEL [dm3] 2R_24375311_DEL [dm6]	CGATCCCCACTCCCAGCC...	C	6.523e^-5	0.82	INTRON bs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8896181	X_8896181_SNP [dm3] X_9002148_SNP [dm6]	A	T	6.532e^-5	0.82	INTRON rdgA & 1 other
3R	25784282	3R_25784282_SNP [dm3] 3R_29958560_SNP [dm6]	T	G	6.585e^-5	0.82	INTRON TkR99D
3R	26182554	3R_26182554_SNP [dm3] 3R_30356832_SNP [dm6]	C	T	6.649e^-5	0.82	INTRON hdc
3L	9494600	3L_9494600_SNP [dm3] 3L_9501500_SNP [dm6]	A	G	6.659e^-5	0.82	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8135231	2R_8135231_SNP [dm3] 2R_12247726_SNP [dm6]	C	T	6.678e^-5	0.82	UPSTREAM CR44315 INTERGENIC	transposable element FlyBase
3R	7755347	3R_7755347_SNP [dm3] 3R_11929625_SNP [dm6]	A	G	6.755e^-5	0.82	INTRON Cad87A
X	12207397	X_12207397_INS [dm3] X_12313364_INS [dm6]	C	CGCCAAGTC	6.769e^-5	0.82	INTRON Ten-a
2R	12096370	2R_12096370_DEL [dm3] 2R_16208865_DEL [dm6]	GG	G	6.777e^-5	0.82	INTRON mrj	TF binding site BDTNP1_TFBS_dl
3L	20434635	3L_20434635_INS [dm3] 3L_20441535_INS [dm6]	G	GAAAACCTG	6.804e^-5	0.82	UPSTREAM CG5910 DOWNSTREAM CR43943 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10211674	X_10211674_SNP [dm3] X_10317641_SNP [dm6]	T	C	6.845e^-5	0.82	INTRON alpha-Man-I
2R	8092654	2R_8092654_SNP [dm3] 2R_12205149_SNP [dm6]	A	T	6.866e^-5	0.82	UPSTREAM CR45276 INTERGENIC
3L	2548857	3L_2548857_SNP [dm3] 3L_2548857_SNP [dm6]	T	A	7.028e^-5	0.827	INTRON Spn
3L	5661096	3L_5661096_SNP [dm3] 3L_5667996_SNP [dm6]	C	A	7.128e^-5	0.827	INTRON sif
2R	8117839	2R_8117839_SNP [dm3] 2R_12230334_SNP [dm6]	G	A	7.183e^-5	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	19666257	2R_19666257_SNP [dm3] 2R_23778734_SNP [dm6]	C	T	7.211e^-5	0.827	INTRON CG9850
2L	9146166	2L_9146166_SNP [dm3] 2L_9146166_SNP [dm6]	T	C	7.364e^-5	0.827	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5408350	2L_5408350_SNP [dm3] 2L_5408350_SNP [dm6]	G	A	7.411e^-5	0.827	INTRON H15	TF binding site mE1_TFBS_cad
2R	8131999	2R_8131999_SNP [dm3] 2R_12244494_SNP [dm6]	T	C	7.435e^-5	0.827	NON_SYNONYMOUS_CODING CG43244
3R	18982582	3R_18982582_SNP [dm3] 3R_23156860_SNP [dm6]	T	C	7.497e^-5	0.827	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	8114301	2R_8114301_SNP [dm3] 2R_12226796_SNP [dm6]	T	G	7.533e^-5	0.827	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
2R	11735896	2R_11735896_SNP [dm3] 2R_15848391_SNP [dm6]	T	A	7.551e^-5	0.827	UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
2L	15093320	2L_15093320_DEL [dm3] 2L_15093320_DEL [dm6]	TTGATTAT	T	7.633e^-5	0.827	INTRON CG15270
2L	13665220	2L_13665220_SNP [dm3] 2L_13665220_SNP [dm6]	G	A	7.714e^-5	0.827	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7061538	2L_7061538_SNP [dm3] 2L_7061538_SNP [dm6]	T	A	7.858e^-5	0.827	NON_SYNONYMOUS_CODING Mnn1 UPSTREAM CG31907
2R	8120064	2R_8120064_SNP [dm3] 2R_12232559_SNP [dm6]	T	C	7.873e^-5	0.827	INTERGENIC
X	12837852	X_12837852_SNP [dm3] X_12943819_SNP [dm6]	C	T	7.889e^-5	0.827	INTRON fne
2R	19666643	2R_19666643_SNP [dm3] 2R_23779120_SNP [dm6]	C	A	7.958e^-5	0.827	INTRON CG9850
3R	7763372	3R_7763372_DEL [dm3] 3R_11937650_DEL [dm6]	AA	A	8.002e^-5	0.827	INTRON Cad87A
2L	7213309	2L_7213309_SNP [dm3] 2L_7213309_SNP [dm6]	T	C	8.069e^-5	0.827	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4525930	3L_4525930_SNP [dm3] 3L_4525930_SNP [dm6]	A	G	8.098e^-5	0.827	INTRON Tie
3L	13188077	3L_13188077_SNP [dm3] 3L_13194977_SNP [dm6]	A	G	8.107e^-5	0.827	INTERGENIC
3L	13188083	3L_13188083_SNP [dm3] 3L_13194983_SNP [dm6]	C	T	8.107e^-5	0.827	INTERGENIC
3L	13188084	3L_13188084_SNP [dm3] 3L_13194984_SNP [dm6]	C	T	8.107e^-5	0.827	INTERGENIC
3L	19311561	3L_19311561_SNP [dm3] 3L_19318461_SNP [dm6]	C	T	8.155e^-5	0.827	INTRON pip	TF binding site mE1_TFBS_cad
2L	2389590	2L_2389590_SNP [dm3] 2L_2389590_SNP [dm6]	G	A	8.164e^-5	0.827	UTR_3_PRIME CG43750 DOWNSTREAM CG43750
3L	5673384	3L_5673384_SNP [dm3] 3L_5680284_SNP [dm6]	A	G	8.184e^-5	0.827	INTRON sif
3L	13188081	3L_13188081_SNP [dm3] 3L_13194981_SNP [dm6]	C	A	8.188e^-5	0.827	INTERGENIC
3R	25485838	3R_25485838_SNP [dm3] 3R_29660116_SNP [dm6]	T	C	8.191e^-5	0.827	UPSTREAM Dop1R2 INTERGENIC
3L	11002798	3L_11002798_SNP [dm3] 3L_11009698_SNP [dm6]	C	T	8.212e^-5	0.827	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	13606565	X_13606565_SNP [dm3] X_13712532_SNP [dm6]	A	G	8.242e^-5	0.827	INTRON CG9940 & 1 other
X	13606606	X_13606606_SNP [dm3] X_13712573_SNP [dm6]	A	G	8.242e^-5	0.827	INTRON CG9940 & 1 other
2L	11298212	2L_11298212_SNP [dm3] 2L_11298212_SNP [dm6]	G	C	8.313e^-5	0.829	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	8113441	2R_8113441_SNP [dm3] 2R_12225936_SNP [dm6]	C	T	8.350e^-5	0.829	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	15461848	2L_15461848_SNP [dm3] 2L_15461848_SNP [dm6]	A	G	8.401e^-5	0.829	INTERGENIC
X	8286659	X_8286659_SNP [dm3] X_8392626_SNP [dm6]	G	A	8.517e^-5	0.836	INTERGENIC
2R	8114221	2R_8114221_SNP [dm3] 2R_12226716_SNP [dm6]	G	T	8.630e^-5	0.837	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
2L	2863728	2L_2863728_SNP [dm3] 2L_2863728_SNP [dm6]	T	A	8.715e^-5	0.837	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3803755	3R_3803755_SNP [dm3] 3R_7978033_SNP [dm6]	T	C	8.747e^-5	0.837	UTR_5_PRIME CD98hc UPSTREAM CD98hc & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10161625	2R_10161625_SNP [dm3] 2R_14274120_SNP [dm6]	G	T	8.752e^-5	0.837	SYNONYMOUS_CODING conv
3L	13188049	3L_13188049_SNP [dm3] 3L_13194949_SNP [dm6]	C	A	8.763e^-5	0.837	INTERGENIC
3R	25837960	3R_25837960_SNP [dm3] 3R_30012238_SNP [dm6]	C	T	8.795e^-5	0.837	INTRON CG7920	TF binding site mE1_TFBS_cad
2L	11917786	2L_11917786_SNP [dm3] 2L_11917786_SNP [dm6]	G	C	8.861e^-5	0.839	INTRON Pde1c
2L	15651017	2L_15651017_SNP [dm3] 2L_15651017_SNP [dm6]	G	C	8.935e^-5	0.842	INTRON CG4587
2R	17094276	2R_17094276_SNP [dm3] 2R_21206771_SNP [dm6]	G	C	9.003e^-5	0.843	INTRON CG44245 & 1 other
3L	1202142	3L_1202142_SNP [dm3] 3L_1202142_SNP [dm6]	G	A	9.071e^-5	0.843	SYNONYMOUS_CODING CG32335 INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21264908	3R_21264908_SNP [dm3] 3R_25439186_SNP [dm6]	A	T	9.079e^-5	0.843	INTRON Fur1
2R	15131659	2R_15131659_SNP [dm3] 2R_19244154_SNP [dm6]	A	G	9.170e^-5	0.846	DOWNSTREAM cora INTERGENIC
3L	17183633	3L_17183633_SNP [dm3] 3L_17190533_SNP [dm6]	A	G	9.200e^-5	0.846	INTRON Rbp6
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	9.424e^-5	0.858	INTERGENIC
2L	5467793	2L_5467793_SNP [dm3] 2L_5467793_SNP [dm6]	A	T	9.463e^-5	0.858	DOWNSTREAM mid INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	8090564	2R_8090564_SNP [dm3] 2R_12203059_SNP [dm6]	G	A	9.469e^-5	0.858	INTERGENIC
3L	3674446	3L_3674446_SNP [dm3] 3L_3674446_SNP [dm6]	T	A	9.604e^-5	0.866	INTERGENIC
2R	13505831	2R_13505831_SNP [dm3] 2R_17618326_SNP [dm6]	T	A	9.915e^-5	0.867	UPSTREAM CG44403 INTRON CG10936
3R	25654921	3R_25654921_DEL [dm3] 3R_29829199_DEL [dm6]	TT	T	9.952e^-5	0.867	INTRON Atg16	enhancer mE1_CBP_Enhancers
3L	9543492	3L_9543492_SNP [dm3] 3L_9550392_SNP [dm6]	C	T	9.990e^-5	0.867	INTRON CG42673
3R	12738528	3R_12738528_SNP [dm3] 3R_16912806_SNP [dm6]	T	G	1.003e^-4	0.867	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
2R	8118204	2R_8118204_SNP [dm3] 2R_12230699_SNP [dm6]	A	C	1.006e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	5000954	3R_5000954_DEL [dm3] 3R_9175232_DEL [dm6]	AA	A	1.006e^-4	0.867	INTRON pum
2L	11917306	2L_11917306_SNP [dm3] 2L_11917306_SNP [dm6]	G	T	1.011e^-4	0.867	INTRON Pde1c
3R	21675754	3R_21675754_SNP [dm3] 3R_25850032_SNP [dm6]	A	C	1.012e^-4	0.867	DOWNSTREAM CG14545 INTERGENIC
3L	20721010	3L_20721010_SNP [dm3] 3L_20727910_SNP [dm6]	C	G	1.012e^-4	0.867	INTERGENIC
3R	21675748	3R_21675748_SNP [dm3] 3R_25850026_SNP [dm6]	A	C	1.019e^-4	0.867	DOWNSTREAM CG14545 INTERGENIC
3R	19323680	3R_19323680_INS [dm3] 3R_23497958_INS [dm6]	C	CT	1.020e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9781983	X_9781983_INS [dm3] X_9887950_INS [dm6]	A	AATATA	1.022e^-4	0.867	DOWNSTREAM CG15249 INTERGENIC
2R	8135204	2R_8135204_INS [dm3] 2R_12247699_INS [dm6]	A	AA	1.030e^-4	0.867	UPSTREAM CR44315 INTERGENIC
X	17102039	X_17102039_SNP [dm3] X_17208006_SNP [dm6]	A	T	1.034e^-4	0.867	UPSTREAM CG32563 DOWNSTREAM CG32564 INTERGENIC
2R	11735369	2R_11735369_SNP [dm3] 2R_15847864_SNP [dm6]	C	T	1.041e^-4	0.867	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6233540	2L_6233540_SNP [dm3] 2L_6233540_SNP [dm6]	T	C	1.041e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25466475	3R_25466475_SNP [dm3] 3R_29640753_SNP [dm6]	G	A	1.046e^-4	0.867	SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_chinmo
2L	13669742	2L_13669742_SNP [dm3] 2L_13669742_SNP [dm6]	C	T	1.049e^-4	0.867	SYNONYMOUS_CODING CG18507 INTRON CG18507
2R	8120586	2R_8120586_SNP [dm3] 2R_12233081_SNP [dm6]	G	A	1.057e^-4	0.867	DOWNSTREAM CR44313 INTERGENIC
3R	6099893	3R_6099893_SNP [dm3] 3R_10274171_SNP [dm6]	G	A	1.066e^-4	0.867	INTRON CG43143
3L	12185047	3L_12185047_SNP [dm3] 3L_12191947_SNP [dm6]	G	A	1.069e^-4	0.867	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
2R	8935604	2R_8935604_SNP [dm3] 2R_13048099_SNP [dm6]	A	G	1.069e^-4	0.867	UPSTREAM CG13323 INTERGENIC
2L	13560078	2L_13560078_INS [dm3] 2L_13560078_INS [dm6]	C	CT	1.070e^-4	0.867	INTRON kuz
2R	19664014	2R_19664014_SNP [dm3] 2R_23776491_SNP [dm6]	A	G	1.072e^-4	0.867	INTRON CG9850
3L	9225981	3L_9225981_SNP [dm3] 3L_9232881_SNP [dm6]	T	C	1.088e^-4	0.868	INTERGENIC
2R	11735691	2R_11735691_SNP [dm3] 2R_15848186_SNP [dm6]	T	G	1.097e^-4	0.868	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
3R	6659878	3R_6659878_SNP [dm3] 3R_10834156_SNP [dm6]	G	C	1.102e^-4	0.868	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19442365	3R_19442365_SNP [dm3] 3R_23616643_SNP [dm6]	A	G	1.105e^-4	0.868	INTRON CG31145
3R	19442386	3R_19442386_SNP [dm3] 3R_23616664_SNP [dm6]	G	C	1.105e^-4	0.868	INTRON CG31145
2R	11735585	2R_11735585_SNP [dm3] 2R_15848080_SNP [dm6]	C	T	1.105e^-4	0.868	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8697335	2L_8697335_SNP [dm3] 2L_8697335_SNP [dm6]	C	A	1.110e^-4	0.868	INTRON Hnf4
2L	5162150	2L_5162150_SNP [dm3] 2L_5162150_SNP [dm6]	A	G	1.111e^-4	0.868	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
2L	12806925	2L_12806925_SNP [dm3] 2L_12806925_SNP [dm6]	T	G	1.127e^-4	0.877	DOWNSTREAM CR43818 INTERGENIC
2L	9211060	2L_9211060_SNP [dm3] 2L_9211060_SNP [dm6]	G	C	1.138e^-4	0.877	INTRON tai
2L	5596273	2L_5596273_SNP [dm3] 2L_5596273_SNP [dm6]	C	A	1.140e^-4	0.877	UPSTREAM CG18266 INTERGENIC
2L	7968331	2L_7968331_SNP [dm3] 2L_7968331_SNP [dm6]	T	C	1.141e^-4	0.877	INTRON Snoo
3R	7735809	3R_7735809_SNP [dm3] 3R_11910087_SNP [dm6]	A	G	1.148e^-4	0.879	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19664319	2R_19664319_SNP [dm3] 2R_23776796_SNP [dm6]	T	G	1.161e^-4	0.884	INTRON CG9850
2R	8106282	2R_8106282_SNP [dm3] 2R_12218777_SNP [dm6]	A	C	1.165e^-4	0.884	INTERGENIC
2R	8078325	2R_8078325_SNP [dm3] 2R_12190820_SNP [dm6]	G	T	1.183e^-4	0.89	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3R	10515286	3R_10515286_DEL [dm3] 3R_14689564_DEL [dm6]	GAAA	G	1.196e^-4	0.89	INTRON Meltrin
3R	17278069	3R_17278069_SNP [dm3] 3R_21452347_SNP [dm6]	A	T	1.198e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16491408	2L_16491408_SNP [dm3] 2L_16491408_SNP [dm6]	C	T	1.199e^-4	0.89	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2R	8101974	2R_8101974_SNP [dm3] 2R_12214469_SNP [dm6]	T	A	1.199e^-4	0.89	DOWNSTREAM CG13171 INTERGENIC
2R	14093831	2R_14093831_SNP [dm3] 2R_18206326_SNP [dm6]	A	T	1.202e^-4	0.89	INTERGENIC
2R	18978690	2R_18978690_SNP [dm3] 2R_23091167_SNP [dm6]	C	A	1.217e^-4	0.89	INTRON CG9876	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	9042232	2R_9042232_SNP [dm3] 2R_13154727_SNP [dm6]	T	C	1.219e^-4	0.89	SYNONYMOUS_CODING TppII
2R	8078384	2R_8078384_SNP [dm3] 2R_12190879_SNP [dm6]	C	T	1.223e^-4	0.89	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3R	7765178	3R_7765178_SNP [dm3] 3R_11939456_SNP [dm6]	T	A	1.224e^-4	0.89	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi
2R	10897085	2R_10897085_SNP [dm3] 2R_15009580_SNP [dm6]	T	A	1.227e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8121885	2R_8121885_SNP [dm3] 2R_12234380_SNP [dm6]	G	A	1.228e^-4	0.89	EXON CR44313
3R	14030411	3R_14030411_SNP [dm3] 3R_18204689_SNP [dm6]	G	A	1.248e^-4	0.893	INTRON CG7985
2R	11735623	2R_11735623_SNP [dm3] 2R_15848118_SNP [dm6]	G	A	1.252e^-4	0.893	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13339147	2R_13339147_SNP [dm3] 2R_17451642_SNP [dm6]	A	T	1.261e^-4	0.893	UPSTREAM mthl3 INTRON mthl3	transposable element FlyBase
3L	5673151	3L_5673151_INS [dm3] 3L_5680051_INS [dm6]	A	ACA	1.272e^-4	0.893	INTRON sif
2R	12096376	2R_12096376_SNP [dm3] 2R_16208871_SNP [dm6]	G	A	1.274e^-4	0.893	INTRON mrj	TF binding site BDTNP1_TFBS_dl
2R	8092269	2R_8092269_SNP [dm3] 2R_12204764_SNP [dm6]	T	A	1.294e^-4	0.893	INTERGENIC
3R	7763244	3R_7763244_SNP [dm3] 3R_11937522_SNP [dm6]	G	A	1.300e^-4	0.893	INTRON Cad87A
2R	8092696	2R_8092696_SNP [dm3] 2R_12205191_SNP [dm6]	C	A	1.300e^-4	0.893	UPSTREAM CR45276 INTERGENIC
X	20618287	X_20618287_INS [dm3] X_20747260_INS [dm6]	G	GTATG	1.302e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8112658	2R_8112658_SNP [dm3] 2R_12225153_SNP [dm6]	G	A	1.302e^-4	0.893	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
3L	10727206	3L_10727206_SNP [dm3] 3L_10734106_SNP [dm6]	C	A	1.303e^-4	0.893	INTERGENIC
2R	8179555	2R_8179555_SNP [dm3] 2R_12292050_SNP [dm6]	T	G	1.304e^-4	0.893	INTRON CG42700
X	12054464	X_12054464_SNP [dm3] X_12160431_SNP [dm6]	A	G	1.314e^-4	0.893	INTRON Ten-a
3L	15300367	3L_15300367_DEL [dm3] 3L_15307267_DEL [dm6]	ATTTAAATAGAAA...	A	1.316e^-4	0.893	INTRON CG7255
2R	8096148	2R_8096148_SNP [dm3] 2R_12208643_SNP [dm6]	C	T	1.317e^-4	0.893	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14373327	2R_14373327_SNP [dm3] 2R_18485822_SNP [dm6]	G	T	1.334e^-4	0.893	INTRON CG30116
3R	7734002	3R_7734002_SNP [dm3] 3R_11908280_SNP [dm6]	A	C	1.336e^-4	0.893	INTRON Cad87A
3R	5895504	3R_5895504_SNP [dm3] 3R_10069782_SNP [dm6]	T	A	1.353e^-4	0.893	INTERGENIC
3R	16573566	3R_16573566_SNP [dm3] 3R_20747844_SNP [dm6]	C	T	1.358e^-4	0.893	SYNONYMOUS_CODING CG42322 DOWNSTREAM Prosalpha4T1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7207864	3L_7207864_SNP [dm3] 3L_7214764_SNP [dm6]	G	T	1.372e^-4	0.893	INTERGENIC
2R	8113161	2R_8113161_SNP [dm3] 2R_12225656_SNP [dm6]	T	A	1.372e^-4	0.893	INTRON CG8854
2R	8121504	2R_8121504_SNP [dm3] 2R_12233999_SNP [dm6]	G	A	1.383e^-4	0.893	EXON CR44313
3R	25817988	3R_25817988_SNP [dm3] 3R_29992266_SNP [dm6]	A	T	1.391e^-4	0.893	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8866515	3L_8866515_SNP [dm3] 3L_8873415_SNP [dm6]	A	G	1.393e^-4	0.893	INTRON dally	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8896188	X_8896188_INS [dm3] X_9002155_INS [dm6]	C	CC	1.400e^-4	0.893	INTRON rdgA & 1 other
2R	14649714	2R_14649714_SNP [dm3] 2R_18762209_SNP [dm6]	C	T	1.403e^-4	0.893	UTR_5_PRIME Mctp
3L	14204414	3L_14204414_SNP [dm3] 3L_14211314_SNP [dm6]	T	G	1.403e^-4	0.893	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8383216	2R_8383216_SNP [dm3] 2R_12495711_SNP [dm6]	T	C	1.406e^-4	0.893	UTR_5_PRIME s-cup INTRON fdl
2R	8179587	2R_8179587_SNP [dm3] 2R_12292082_SNP [dm6]	A	G	1.409e^-4	0.893	INTRON CG42700
3R	6078825	3R_6078825_SNP [dm3] 3R_10253103_SNP [dm6]	C	A	1.420e^-4	0.893	SYNONYMOUS_CODING CG3999
X	13611414	X_13611414_SNP [dm3] X_13717381_SNP [dm6]	A	T	1.422e^-4	0.893	SYNONYMOUS_CODING NnaD INTRON CG9940	TF binding site mE1_TFBS_chinmo
2R	20263327	2R_20263327_SNP [dm3] 2R_24375804_SNP [dm6]	T	C	1.424e^-4	0.893	INTRON bs	TF binding site mE1_TFBS_chinmo
2R	6922672	2R_6922672_SNP [dm3] 2R_11035167_SNP [dm6]	A	T	1.426e^-4	0.893	INTRON luna	TF binding site mE1_TFBS_cad
2R	19666645	2R_19666645_SNP [dm3] 2R_23779122_SNP [dm6]	G	A	1.429e^-4	0.893	INTRON CG9850
3R	19324274	3R_19324274_SNP [dm3] 3R_23498552_SNP [dm6]	G	A	1.430e^-4	0.893	INTERGENIC
2R	9884202	2R_9884202_SNP [dm3] 2R_13996697_SNP [dm6]	T	G	1.432e^-4	0.893	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9904023	2R_9904023_SNP [dm3] 2R_14016518_SNP [dm6]	G	A	1.437e^-4	0.893	INTRON mam
2R	8179522	2R_8179522_SNP [dm3] 2R_12292017_SNP [dm6]	G	C	1.446e^-4	0.893	INTRON CG42700
3L	1047134	3L_1047134_SNP [dm3] 3L_1047134_SNP [dm6]	G	A	1.456e^-4	0.893	INTRON bab1
2L	13560082	2L_13560082_SNP [dm3] 2L_13560082_SNP [dm6]	G	T	1.459e^-4	0.893	INTRON kuz
X	12054442	X_12054442_SNP [dm3] X_12160409_SNP [dm6]	A	G	1.461e^-4	0.893	INTRON Ten-a
3L	9191571	3L_9191571_SNP [dm3] 3L_9198471_SNP [dm6]	G	A	1.473e^-4	0.893	INTERGENIC
3R	7633265	3R_7633265_INS [dm3] 3R_11807543_INS [dm6]	T	TA	1.485e^-4	0.893	UPSTREAM ClC-a INTRON ClC-a
2R	8121501	2R_8121501_SNP [dm3] 2R_12233996_SNP [dm6]	G	A	1.485e^-4	0.893	EXON CR44313
2R	20263337	2R_20263337_SNP [dm3] 2R_24375814_SNP [dm6]	G	A	1.487e^-4	0.893	INTRON bs	TF binding site mE1_TFBS_chinmo
2L	14066368	2L_14066368_SNP [dm3] 2L_14066368_SNP [dm6]	T	A	1.501e^-4	0.893	INTRON nAChRalpha5
2R	8078974	2R_8078974_SNP [dm3] 2R_12191469_SNP [dm6]	G	C	1.505e^-4	0.893	NON_SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
3R	5438822	3R_5438822_SNP [dm3] 3R_9613100_SNP [dm6]	A	T	1.510e^-4	0.893	INTRON CG8312
2L	8224915	2L_8224915_SNP [dm3] 2L_8224915_SNP [dm6]	G	A	1.514e^-4	0.893	SYNONYMOUS_CODING Pvr
X	18282338	X_18282338_SNP [dm3] X_18388305_SNP [dm6]	T	C	1.515e^-4	0.893	SYNONYMOUS_CODING Tsf1	TF binding site mE1_TFBS_chinmo
X	9781965	X_9781965_INS [dm3] X_9887932_INS [dm6]	A	ACATTTTGAA	1.516e^-4	0.893	DOWNSTREAM CG15249 INTERGENIC
3L	1825298	3L_1825298_SNP [dm3] 3L_1825298_SNP [dm6]	T	C	1.523e^-4	0.893	INTRON Cpr62Ba
3R	8160719	3R_8160719_SNP [dm3] 3R_12334997_SNP [dm6]	A	G	1.531e^-4	0.893	UPSTREAM CR44941 INTERGENIC
3L	12464869	3L_12464869_SNP [dm3] 3L_12471769_SNP [dm6]	A	T	1.534e^-4	0.893	UTR_5_PRIME CG10616	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	8159743	2R_8159743_SNP [dm3] 2R_12272238_SNP [dm6]	A	T	1.537e^-4	0.893	INTRON Cam
2L	514292	2L_514292_SNP [dm3] 2L_514292_SNP [dm6]	T	C	1.542e^-4	0.893	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6915005	2R_6915005_SNP [dm3] 2R_11027500_SNP [dm6]	C	T	1.543e^-4	0.893	INTRON luna
2R	8964903	2R_8964903_SNP [dm3] 2R_13077398_SNP [dm6]	A	G	1.544e^-4	0.893	INTRON Drl-2	TF binding site mE1_TFBS_cad
2R	8121579	2R_8121579_SNP [dm3] 2R_12234074_SNP [dm6]	A	G	1.546e^-4	0.893	EXON CR44313
2L	10008429	2L_10008429_INS [dm3] 2L_10008429_INS [dm6]	T	AA	1.548e^-4	0.893	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
2R	8147573	2R_8147573_SNP [dm3] 2R_12260068_SNP [dm6]	A	C	1.556e^-4	0.893	UTR_5_PRIME Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	25655836	3R_25655836_SNP [dm3] 3R_29830114_SNP [dm6]	T	C	1.580e^-4	0.893	INTRON Atg16	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17279197	3R_17279197_SNP [dm3] 3R_21453475_SNP [dm6]	T	C	1.593e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	11458720	2L_11458720_SNP [dm3] 2L_11458720_SNP [dm6]	G	C	1.597e^-4	0.893	INTERGENIC
2L	15826093	2L_15826093_SNP [dm3] 2L_15826093_SNP [dm6]	T	C	1.603e^-4	0.893	INTERGENIC
2R	5644050	2R_5644050_SNP [dm3] 2R_9756545_SNP [dm6]	G	A	1.611e^-4	0.893	UTR_3_PRIME CG1690 DOWNSTREAM CG1690 INTRON trpl
2L	10012801	2L_10012801_SNP [dm3] 2L_10012801_SNP [dm6]	G	C	1.618e^-4	0.893	UTR_3_PRIME Trp1 DOWNSTREAM Trp1 & 1 other
2R	8096236	2R_8096236_SNP [dm3] 2R_12208731_SNP [dm6]	A	C	1.619e^-4	0.893	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5629439	3L_5629439_SNP [dm3] 3L_5636339_SNP [dm6]	G	T	1.621e^-4	0.893	UTR_5_PRIME Blimp-1 INTRON Blimp-1
3L	14949842	3L_14949842_SNP [dm3] 3L_14956742_SNP [dm6]	T	C	1.622e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	19294915	3R_19294915_SNP [dm3] 3R_23469193_SNP [dm6]	G	T	1.629e^-4	0.893	INTRON CG4374
3L	1604192	3L_1604192_SNP [dm3] 3L_1604192_SNP [dm6]	C	A	1.630e^-4	0.893	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3L	8859773	3L_8859773_SNP [dm3] 3L_8866673_SNP [dm6]	A	G	1.631e^-4	0.893	INTRON dally
3R	19442246	3R_19442246_SNP [dm3] 3R_23616524_SNP [dm6]	T	C	1.637e^-4	0.893	INTRON CG31145
3L	13188650	3L_13188650_SNP [dm3] 3L_13195550_SNP [dm6]	T	A	1.642e^-4	0.893	INTERGENIC
X	9782160	X_9782160_SNP [dm3] X_9888127_SNP [dm6]	T	G	1.644e^-4	0.893	UTR_3_PRIME CG15249
3R	16351462	3R_16351462_SNP [dm3] 3R_20525740_SNP [dm6]	A	G	1.645e^-4	0.893	INTERGENIC
2L	2096576	2L_2096576_SNP [dm3] 2L_2096576_SNP [dm6]	G	T	1.660e^-4	0.893	INTRON dpr3
X	1162157	X_1162157_SNP [dm3] X_1268124_SNP [dm6]	C	T	1.661e^-4	0.893	INTRON Atf3
3R	18149642	3R_18149642_SNP [dm3] 3R_22323920_SNP [dm6]	T	G	1.663e^-4	0.893	UTR_5_PRIME CG34377
2R	8091687	2R_8091687_SNP [dm3] 2R_12204182_SNP [dm6]	A	G	1.666e^-4	0.893	INTERGENIC
3R	12039781	3R_12039781_SNP [dm3] 3R_16214059_SNP [dm6]	G	T	1.670e^-4	0.893	UPSTREAM CR45641 DOWNSTREAM CR45642 INTERGENIC
3L	13188580	3L_13188580_SNP [dm3] 3L_13195480_SNP [dm6]	A	C	1.680e^-4	0.893	INTERGENIC
2R	8120262	2R_8120262_SNP [dm3] 2R_12232757_SNP [dm6]	T	G	1.686e^-4	0.893	INTERGENIC
3R	21992444	3R_21992444_SNP [dm3] 3R_26166722_SNP [dm6]	C	A	1.689e^-4	0.893	INTERGENIC
2R	10106096	2R_10106096_SNP [dm3] 2R_14218591_SNP [dm6]	C	A	1.691e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	10608971	2R_10608971_SNP [dm3] 2R_14721466_SNP [dm6]	A	T	1.693e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13606599	X_13606599_SNP [dm3] X_13712566_SNP [dm6]	G	A	1.694e^-4	0.893	INTRON CG9940 & 1 other
2L	15650069	2L_15650069_SNP [dm3] 2L_15650069_SNP [dm6]	A	T	1.713e^-4	0.893	INTRON CG4587	TF binding site mE1_TFBS_inv
2R	11735972	2R_11735972_DEL [dm3] 2R_15848467_DEL [dm6]	CTGTTTCTTAT...	C	1.715e^-4	0.893	UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
2R	8116237	2R_8116237_SNP [dm3] 2R_12228732_SNP [dm6]	T	C	1.717e^-4	0.893	INTRON CG8854
2R	8095506	2R_8095506_SNP [dm3] 2R_12208001_SNP [dm6]	T	A	1.720e^-4	0.893	DOWNSTREAM CR45276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	6013186	X_6013186_SNP [dm3] X_6119153_SNP [dm6]	A	T	1.727e^-4	0.893	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16361964	3L_16361964_SNP [dm3] 3L_16368864_SNP [dm6]	C	T	1.750e^-4	0.893	UPSTREAM CG18814 INTRON CG4842
2R	3986093	2R_3986093_SNP [dm3] 2R_8098588_SNP [dm6]	T	A	1.750e^-4	0.893	UPSTREAM CG11210 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2R	8091180	2R_8091180_SNP [dm3] 2R_12203675_SNP [dm6]	C	A	1.753e^-4	0.893	INTERGENIC
2L	14066364	2L_14066364_SNP [dm3] 2L_14066364_SNP [dm6]	C	A	1.753e^-4	0.893	INTRON nAChRalpha5
2R	7835767	2R_7835767_SNP [dm3] 2R_11948262_SNP [dm6]	A	G	1.758e^-4	0.893	INTRON CG13188
3L	18363798	3L_18363798_SNP [dm3] 3L_18370698_SNP [dm6]	C	A	1.759e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_sens
X	8096028	X_8096028_SNP [dm3] X_8201995_SNP [dm6]	C	T	1.763e^-4	0.893	INTRON sdt
X	8736746	X_8736746_SNP [dm3] X_8842713_SNP [dm6]	G	C	1.776e^-4	0.893	INTRON CG12075
2R	8121576	2R_8121576_SNP [dm3] 2R_12234071_SNP [dm6]	A	G	1.797e^-4	0.893	EXON CR44313
3L	12939424	3L_12939424_SNP [dm3] 3L_12946324_SNP [dm6]	T	C	1.801e^-4	0.893	INTERGENIC
2L	4357445	2L_4357445_SNP [dm3] 2L_4357445_SNP [dm6]	T	G	1.807e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	18754607	2L_18754607_SNP [dm3] 2L_18754607_SNP [dm6]	C	T	1.815e^-4	0.893	INTERGENIC
2R	8096239	2R_8096239_SNP [dm3] 2R_12208734_SNP [dm6]	T	C	1.820e^-4	0.893	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19126849	2R_19126849_SNP [dm3] 2R_23239326_SNP [dm6]	G	T	1.823e^-4	0.893	INTERGENIC
3L	14949786	3L_14949786_SNP [dm3] 3L_14956686_SNP [dm6]	C	T	1.824e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	12186593	3L_12186593_SNP [dm3] 3L_12193493_SNP [dm6]	A	G	1.829e^-4	0.893	SPLICE_SITE_REGION thoc6 SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
2R	8936631	2R_8936631_SNP [dm3] 2R_13049126_SNP [dm6]	T	C	1.829e^-4	0.893	DOWNSTREAM CG13324 INTERGENIC
2R	8137315	2R_8137315_SNP [dm3] 2R_12249810_SNP [dm6]	G	A	1.831e^-4	0.893	INTERGENIC
2R	11735989	2R_11735989_SNP [dm3] 2R_15848484_SNP [dm6]	C	T	1.836e^-4	0.893	UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
3L	10916325	3L_10916325_SNP [dm3] 3L_10923225_SNP [dm6]	A	G	1.837e^-4	0.893	INTERGENIC
2R	8116163	2R_8116163_SNP [dm3] 2R_12228658_SNP [dm6]	T	A	1.844e^-4	0.893	INTRON CG8854
3R	25653905	3R_25653905_SNP [dm3] 3R_29828183_SNP [dm6]	G	A	1.847e^-4	0.893	INTRON Atg16
2R	8555050	2R_8555050_INS [dm3] 2R_12667545_INS [dm6]	G	GTTTAAAAGTAAATAGAGTA...	1.849e^-4	0.893	INTRON nemy
2R	8555052	2R_8555052_INS [dm3] 2R_12667547_INS [dm6]	A	AATAAAGTT	1.849e^-4	0.893	INTRON nemy
X	17311902	X_17311902_SNP [dm3] X_17417869_SNP [dm6]	T	A	1.863e^-4	0.893	INTRON CG8611	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13606629	X_13606629_SNP [dm3] X_13712596_SNP [dm6]	A	G	1.865e^-4	0.893	INTRON CG9940 & 1 other
X	12837814	X_12837814_SNP [dm3] X_12943781_SNP [dm6]	T	C	1.875e^-4	0.893	INTRON fne
2L	14910097	2L_14910097_SNP [dm3] 2L_14910097_SNP [dm6]	G	A	1.883e^-4	0.893	INTRON CG42313	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8132371	2R_8132371_SNP [dm3] 2R_12244866_SNP [dm6]	C	A	1.883e^-4	0.893	UPSTREAM CG43244 INTERGENIC
2R	8115222	2R_8115222_SNP [dm3] 2R_12227717_SNP [dm6]	T	C	1.894e^-4	0.893	UPSTREAM CG8854 INTRON CG8854
2R	8131189	2R_8131189_SNP [dm3] 2R_12243684_SNP [dm6]	A	C	1.896e^-4	0.893	DOWNSTREAM CG43244 & 1 other INTERGENIC
3R	6616901	3R_6616901_SNP [dm3] 3R_10791179_SNP [dm6]	T	G	1.896e^-4	0.893	DOWNSTREAM Mcm5 INTERGENIC	regulatory region REDfly_CRMs
2R	8143235	2R_8143235_SNP [dm3] 2R_12255730_SNP [dm6]	T	A	1.896e^-4	0.893	DOWNSTREAM CG13168 INTERGENIC
2R	8144175	2R_8144175_SNP [dm3] 2R_12256670_SNP [dm6]	G	T	1.897e^-4	0.893	UPSTREAM Vha36-2 DOWNSTREAM CG13168 INTERGENIC
2R	1318622	2R_1318622_SNP [dm3] 2R_5431117_SNP [dm6]	C	T	1.906e^-4	0.893	INTRON laccase2	transposable element FlyBase
2R	8101975	2R_8101975_SNP [dm3] 2R_12214470_SNP [dm6]	G	A	1.909e^-4	0.893	DOWNSTREAM CG13171 INTERGENIC
3R	19324300	3R_19324300_DEL [dm3] 3R_23498578_DEL [dm6]	AATATCA	A	1.910e^-4	0.893	INTERGENIC
2R	8095966	2R_8095966_SNP [dm3] 2R_12208461_SNP [dm6]	G	A	1.910e^-4	0.893	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3L	11002799	3L_11002799_SNP [dm3] 3L_11009699_SNP [dm6]	A	T	1.915e^-4	0.893	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	25613985	3R_25613985_SNP [dm3] 3R_29788263_SNP [dm6]	C	T	1.921e^-4	0.893	UPSTREAM kay INTRON kay
3R	6087038	3R_6087038_SNP [dm3] 3R_10261316_SNP [dm6]	T	C	1.924e^-4	0.893	NON_SYNONYMOUS_CODING Sirt6 UPSTREAM pont	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6233189	2L_6233189_SNP [dm3] 2L_6233189_SNP [dm6]	G	C	1.930e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13198969	3R_13198969_SNP [dm3] 3R_17373247_SNP [dm6]	T	A	1.934e^-4	0.893	INTERGENIC
3R	26870329	3R_26870329_SNP [dm3] 3R_31044607_SNP [dm6]	G	A	1.936e^-4	0.893	SYNONYMOUS_CODING CG33920 INTRON CanA1
2L	22092119	2L_22092119_SNP [dm3] 2L_22092119_SNP [dm6]	T	A	1.941e^-4	0.893	INTERGENIC	transposable element FlyBase
3R	5933432	3R_5933432_SNP [dm3] 3R_10107710_SNP [dm6]	T	G	1.971e^-4	0.893	INTRON Fmr1	TF binding site BDTNP1_TFBS_da
3R	19776315	3R_19776315_SNP [dm3] 3R_23950593_SNP [dm6]	A	G	1.972e^-4	0.893	INTERGENIC
2R	8094113	2R_8094113_SNP [dm3] 2R_12206608_SNP [dm6]	A	G	1.972e^-4	0.893	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	7317845	X_7317845_SNP [dm3] X_7423812_SNP [dm6]	T	A	1.972e^-4	0.893	DOWNSTREAM CG15036 INTERGENIC
3L	17965562	3L_17965562_SNP [dm3] 3L_17972462_SNP [dm6]	G	C	1.974e^-4	0.893	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	11331870	3L_11331870_SNP [dm3] 3L_11338770_SNP [dm6]	T	G	1.977e^-4	0.893	INTERGENIC
X	17654503	X_17654503_SNP [dm3] X_17760470_SNP [dm6]	C	A	1.978e^-4	0.893	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14206340	3L_14206340_SNP [dm3] 3L_14213240_SNP [dm6]	T	A	1.983e^-4	0.893	INTRON nuf	TF binding site mE1_TFBS_bab1
2R	20194812	2R_20194812_SNP [dm3] 2R_24307289_SNP [dm6]	C	T	1.983e^-4	0.893	INTRON betaTub60D	regulatory region REDfly_CRMs
2L	13559983	2L_13559983_SNP [dm3] 2L_13559983_SNP [dm6]	C	A	1.985e^-4	0.893	INTRON kuz
2R	9872454	2R_9872454_SNP [dm3] 2R_13984949_SNP [dm6]	C	A	1.987e^-4	0.893	UTR_3_PRIME RN-tre DOWNSTREAM CG8067
2R	3354774	2R_3354774_SNP [dm3] 2R_7467269_SNP [dm6]	A	G	1.996e^-4	0.893	UTR_3_PRIME Aldh-III UPSTREAM p47 INTRON Aldh-III	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	20388011	3L_20388011_SNP [dm3] 3L_20394911_SNP [dm6]	A	C	1.998e^-4	0.893	DOWNSTREAM CR45677 INTERGENIC
2R	11735759	2R_11735759_SNP [dm3] 2R_15848254_SNP [dm6]	T	A	2.003e^-4	0.893	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
2R	8110582	2R_8110582_SNP [dm3] 2R_12223077_SNP [dm6]	C	T	2.005e^-4	0.893	INTERGENIC
2R	8117941	2R_8117941_SNP [dm3] 2R_12230436_SNP [dm6]	A	C	2.007e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	6080248	3R_6080248_SNP [dm3] 3R_10254526_SNP [dm6]	G	A	2.008e^-4	0.893	SYNONYMOUS_CODING CG3999 DOWNSTREAM Sirt6	TF binding site mE1_TFBS_sens
3L	12184888	3L_12184888_SNP [dm3] 3L_12191788_SNP [dm6]	T	A	2.023e^-4	0.893	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6	TF binding site mE1_TFBS_sens
2R	8159740	2R_8159740_DEL [dm3] 2R_12272235_DEL [dm6]	TT	T	2.035e^-4	0.893	INTRON Cam
2L	16501735	2L_16501735_SNP [dm3] 2L_16501735_SNP [dm6]	C	T	2.035e^-4	0.893	UPSTREAM Tpr2 INTRON Tpr2
2L	6234355	2L_6234355_SNP [dm3] 2L_6234355_SNP [dm6]	T	A	2.043e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9152055	2R_9152055_SNP [dm3] 2R_13264550_SNP [dm6]	A	G	2.044e^-4	0.893	NON_SYNONYMOUS_CODING CG42319 DOWNSTREAM CG42319
3L	20719326	3L_20719326_SNP [dm3] 3L_20726226_SNP [dm6]	C	T	2.046e^-4	0.893	INTERGENIC
2R	7104715	2R_7104715_SNP [dm3] 2R_11217210_SNP [dm6]	T	A	2.048e^-4	0.893	UTR_3_PRIME shn DOWNSTREAM CG9084
2L	13581883	2L_13581883_SNP [dm3] 2L_13581883_SNP [dm6]	A	G	2.054e^-4	0.893	UPSTREAM CR44973 INTRON kuz
3L	13187881	3L_13187881_SNP [dm3] 3L_13194781_SNP [dm6]	T	C	2.061e^-4	0.893	INTERGENIC
2R	12958291	2R_12958291_SNP [dm3] 2R_17070786_SNP [dm6]	T	C	2.068e^-4	0.893	INTRON CG30460	TF binding site mE1_TFBS_cad
3R	25198615	3R_25198615_SNP [dm3] 3R_29372893_SNP [dm6]	T	A	2.069e^-4	0.893	INTERGENIC
3R	4081475	3R_4081475_SNP [dm3] 3R_8255753_SNP [dm6]	T	A	2.069e^-4	0.893	INTRON mtg
3L	1285619	3L_1285619_SNP [dm3] 3L_1285619_SNP [dm6]	A	T	2.071e^-4	0.893	INTRON CG32333
X	13026115	X_13026115_SNP [dm3] X_13132082_SNP [dm6]	T	G	2.074e^-4	0.893	INTRON MFS10 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11736001	2R_11736001_SNP [dm3] 2R_15848496_SNP [dm6]	G	T	2.079e^-4	0.893	UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
2L	11430066	2L_11430066_SNP [dm3] 2L_11430066_SNP [dm6]	T	C	2.089e^-4	0.893	INTERGENIC
2L	5716144	2L_5716144_SNP [dm3] 2L_5716144_SNP [dm6]	G	A	2.093e^-4	0.893	SYNONYMOUS_CODING CG14007 UPSTREAM CG34011 EXON CR44818
3L	10155915	3L_10155915_SNP [dm3] 3L_10162815_SNP [dm6]	G	A	2.108e^-4	0.893	INTRON dpr10
2R	11975923	2R_11975923_SNP [dm3] 2R_16088418_SNP [dm6]	C	A	2.113e^-4	0.893	INTRON Dg
2L	13665284	2L_13665284_SNP [dm3] 2L_13665284_SNP [dm6]	C	T	2.116e^-4	0.893	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	11430079	2L_11430079_SNP [dm3] 2L_11430079_SNP [dm6]	T	A	2.138e^-4	0.893	INTERGENIC
2L	11430020	2L_11430020_SNP [dm3] 2L_11430020_SNP [dm6]	C	G	2.141e^-4	0.893	INTERGENIC
2L	10559676	2L_10559676_SNP [dm3] 2L_10559676_SNP [dm6]	A	C	2.146e^-4	0.893	INTRON Trim9
2L	4874375	2L_4874375_SNP [dm3] 2L_4874375_SNP [dm6]	A	T	2.149e^-4	0.893	UTR_3_PRIME pog INTRON pog
3R	19442328	3R_19442328_SNP [dm3] 3R_23616606_SNP [dm6]	G	A	2.149e^-4	0.893	INTRON CG31145
3R	2269995	3R_2269995_SNP [dm3] 3R_6444273_SNP [dm6]	C	A	2.149e^-4	0.893	SYNONYMOUS_CODING gpp
3L	9514910	3L_9514910_SNP [dm3] 3L_9521810_SNP [dm6]	G	A	2.153e^-4	0.893	INTRON CG33700
2R	9875176	2R_9875176_SNP [dm3] 2R_13987671_SNP [dm6]	C	T	2.153e^-4	0.893	UTR_3_PRIME RN-tre INTRON RN-tre
2L	7067893	2L_7067893_SNP [dm3] 2L_7067893_SNP [dm6]	T	G	2.170e^-4	0.893	UPSTREAM CG11289 INTERGENIC
X	2607497	X_2607497_SNP [dm3] X_2713464_SNP [dm6]	C	G	2.179e^-4	0.893	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3986096	2R_3986096_SNP [dm3] 2R_8098591_SNP [dm6]	T	A	2.179e^-4	0.893	UPSTREAM CG11210 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2R	16877613	2R_16877613_SNP [dm3] 2R_20990108_SNP [dm6]	C	A	2.190e^-4	0.893	INTRON CG3216	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	6096247	3R_6096247_SNP [dm3] 3R_10270525_SNP [dm6]	C	T	2.194e^-4	0.893	INTRON CG43143
2R	8113309	2R_8113309_SNP [dm3] 2R_12225804_SNP [dm6]	C	T	2.194e^-4	0.893	NON_SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
3L	17591611	3L_17591611_SNP [dm3] 3L_17598511_SNP [dm6]	A	C	2.208e^-4	0.893	INTRON Eip74EF	TF binding site mE1_TFBS_cad
2L	9409329	2L_9409329_SNP [dm3] 2L_9409329_SNP [dm6]	T	A	2.210e^-4	0.893	INTRON Shawl
2R	8101969	2R_8101969_INS [dm3] 2R_12214464_INS [dm6]	A	ATGTA	2.210e^-4	0.893	DOWNSTREAM CG13171 INTERGENIC
2R	8159731	2R_8159731_SNP [dm3] 2R_12272226_SNP [dm6]	A	G	2.214e^-4	0.893	INTRON Cam
2R	9743033	2R_9743033_SNP [dm3] 2R_13855528_SNP [dm6]	A	G	2.223e^-4	0.893	SYNONYMOUS_CODING CG6553 DOWNSTREAM tum EXON CR44367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14093813	2R_14093813_SNP [dm3] 2R_18206308_SNP [dm6]	C	G	2.224e^-4	0.893	INTERGENIC
X	3207705	X_3207705_SNP [dm3] X_3313672_SNP [dm6]	A	G	2.226e^-4	0.893	UTR_5_PRIME dnc UPSTREAM dnc INTRON dnc & 1 other
X	13026246	X_13026246_SNP [dm3] X_13132213_SNP [dm6]	G	C	2.235e^-4	0.893	INTRON MFS10 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	8110983	2R_8110983_DEL [dm3] 2R_12223478_DEL [dm6]	CT	A	2.240e^-4	0.893	DOWNSTREAM CG8854 INTERGENIC
3R	6090343	3R_6090343_SNP [dm3] 3R_10264621_SNP [dm6]	C	G	2.241e^-4	0.893	UTR_5_PRIME CG43143 DOWNSTREAM pont	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9904943	2R_9904943_SNP [dm3] 2R_14017438_SNP [dm6]	C	G	2.244e^-4	0.893	INTRON mam
2R	9189166	2R_9189166_SNP [dm3] 2R_13301661_SNP [dm6]	T	G	2.245e^-4	0.893	DOWNSTREAM CG17047 INTERGENIC
2L	11298215	2L_11298215_SNP [dm3] 2L_11298215_SNP [dm6]	C	A	2.247e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	8132007	2R_8132007_SNP [dm3] 2R_12244502_SNP [dm6]	C	T	2.252e^-4	0.893	NON_SYNONYMOUS_CODING CG43244
2R	8110146	2R_8110146_SNP [dm3] 2R_12222641_SNP [dm6]	G	T	2.254e^-4	0.893	INTERGENIC
2R	8121633	2R_8121633_SNP [dm3] 2R_12234128_SNP [dm6]	C	G	2.255e^-4	0.893	EXON CR44313
3R	3803341	3R_3803341_SNP [dm3] 3R_7977619_SNP [dm6]	C	G	2.255e^-4	0.893	UTR_5_PRIME CD98hc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	9974029	2R_9974029_SNP [dm3] 2R_14086524_SNP [dm6]	G	T	2.259e^-4	0.893	INTRON Prosap
3L	7095731	3L_7095731_SNP [dm3] 3L_7102631_SNP [dm6]	G	A	2.269e^-4	0.893	INTRON form3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18982542	3R_18982542_SNP [dm3] 3R_23156820_SNP [dm6]	A	G	2.276e^-4	0.893	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	13112945	3L_13112945_SNP [dm3] 3L_13119845_SNP [dm6]	A	T	2.279e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	8131121	2R_8131121_SNP [dm3] 2R_12243616_SNP [dm6]	T	C	2.283e^-4	0.893	DOWNSTREAM CG43244 & 1 other INTERGENIC
2L	652024	2L_652024_SNP [dm3] 2L_652024_SNP [dm6]	C	T	2.290e^-4	0.893	INTRON ds
3R	18914736	3R_18914736_SNP [dm3] 3R_23089014_SNP [dm6]	T	C	2.291e^-4	0.893	INTRON CG13830
2R	8117911	2R_8117911_SNP [dm3] 2R_12230406_SNP [dm6]	A	C	2.304e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	7406958	2R_7406958_SNP [dm3] 2R_11519453_SNP [dm6]	G	A	2.317e^-4	0.893	INTERGENIC
3L	20388365	3L_20388365_SNP [dm3] 3L_20395265_SNP [dm6]	T	C	2.321e^-4	0.893	DOWNSTREAM CR45677 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10731181	2R_10731181_SNP [dm3] 2R_14843676_SNP [dm6]	T	A	2.327e^-4	0.893	INTRON NaPi-T
2R	8132388	2R_8132388_SNP [dm3] 2R_12244883_SNP [dm6]	G	T	2.333e^-4	0.893	UPSTREAM CG43244 INTERGENIC
X	20891586	X_20891586_SNP [dm3] X_21020559_SNP [dm6]	G	A	2.335e^-4	0.893	INTERGENIC
2R	8173649	2R_8173649_SNP [dm3] 2R_12286144_SNP [dm6]	C	G	2.335e^-4	0.893	NON_SYNONYMOUS_CODING CG42700 INTRON CG42700
2R	4192646	2R_4192646_SNP [dm3] 2R_8305141_SNP [dm6]	G	A	2.357e^-4	0.893	DOWNSTREAM CR44447 INTERGENIC
3R	19295009	3R_19295009_SNP [dm3] 3R_23469287_SNP [dm6]	A	C	2.364e^-4	0.893	INTRON CG4374
2R	20262821	2R_20262821_SNP [dm3] 2R_24375298_SNP [dm6]	A	C	2.371e^-4	0.893	INTRON bs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13338994	2R_13338994_SNP [dm3] 2R_17451489_SNP [dm6]	T	C	2.372e^-4	0.893	UPSTREAM mthl3 INTRON mthl3
3R	6097864	3R_6097864_SNP [dm3] 3R_10272142_SNP [dm6]	A	G	2.373e^-4	0.893	INTRON CG43143
X	9781094	X_9781094_SNP [dm3] X_9887061_SNP [dm6]	C	T	2.375e^-4	0.893	DOWNSTREAM CG15249 INTERGENIC
X	3422445	X_3422445_SNP [dm3] X_3528412_SNP [dm6]	G	A	2.375e^-4	0.893	INTRON CG32791
X	18777855	X_18777855_SNP [dm3] X_18883822_SNP [dm6]	C	T	2.380e^-4	0.893	UTR_3_PRIME CG34401 UPSTREAM CG7332	TF binding site mE1_TFBS_HSA
X	8736721	X_8736721_SNP [dm3] X_8842688_SNP [dm6]	T	G	2.389e^-4	0.893	INTRON CG12075
2R	13502167	2R_13502167_SNP [dm3] 2R_17614662_SNP [dm6]	T	A	2.393e^-4	0.893	INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	11255439	3L_11255439_SNP [dm3] 3L_11262339_SNP [dm6]	C	G	2.394e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17714181	2R_17714181_SNP [dm3] 2R_21826676_SNP [dm6]	A	G	2.395e^-4	0.893	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	15135477	X_15135477_SNP [dm3] X_15241444_SNP [dm6]	C	T	2.397e^-4	0.893	INTERGENIC
3L	8061395	3L_8061395_DEL [dm3] 3L_8068295_DEL [dm6]	AAAAATC	A	2.400e^-4	0.893	UPSTREAM tRNA:CR32363 DOWNSTREAM CG42590 INTRON Ect4
2L	13582764	2L_13582764_SNP [dm3] 2L_13582764_SNP [dm6]	A	T	2.409e^-4	0.893	INTRON kuz EXON CR44973
3L	19217913	3L_19217913_SNP [dm3] 3L_19224813_SNP [dm6]	A	G	2.411e^-4	0.893	INTRON fz2
3L	9496260	3L_9496260_SNP [dm3] 3L_9503160_SNP [dm6]	T	C	2.417e^-4	0.893	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10210786	X_10210786_SNP [dm3] X_10316753_SNP [dm6]	A	T	2.420e^-4	0.893	INTRON alpha-Man-I
3R	25816292	3R_25816292_SNP [dm3] 3R_29990570_SNP [dm6]	C	T	2.421e^-4	0.893	UTR_3_PRIME CG7896 DOWNSTREAM Acph-1	TF binding site mE1_TFBS_cad
2L	5695604	2L_5695604_SNP [dm3] 2L_5695604_SNP [dm6]	T	A	2.424e^-4	0.893	INTERGENIC
3R	27138188	3R_27138188_SNP [dm3] 3R_31312466_SNP [dm6]	C	G	2.438e^-4	0.893	INTRON CG34347
2L	13667590	2L_13667590_SNP [dm3] 2L_13667590_SNP [dm6]	G	A	2.443e^-4	0.893	INTRON CG18507
2R	8093892	2R_8093892_SNP [dm3] 2R_12206387_SNP [dm6]	G	A	2.449e^-4	0.893	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10897097	2R_10897097_DEL [dm3] 2R_15009592_DEL [dm6]	TCGCTATAATATACATAT...	T	2.455e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10210715	X_10210715_SNP [dm3] X_10316682_SNP [dm6]	G	A	2.456e^-4	0.893	INTRON alpha-Man-I
2L	10111671	2L_10111671_SNP [dm3] 2L_10111671_SNP [dm6]	T	C	2.457e^-4	0.893	INTRON CG44153 & 1 other
2L	4212424	2L_4212424_SNP [dm3] 2L_4212424_SNP [dm6]	C	T	2.458e^-4	0.893	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8101995	2R_8101995_SNP [dm3] 2R_12214490_SNP [dm6]	C	T	2.470e^-4	0.893	DOWNSTREAM CG13171 INTERGENIC
2L	12927050	2L_12927050_SNP [dm3] 2L_12927050_SNP [dm6]	A	T	2.471e^-4	0.893	INTRON ACXE
2L	16393212	2L_16393212_SNP [dm3] 2L_16393212_SNP [dm6]	C	G	2.472e^-4	0.893	INTERGENIC
2R	11736090	2R_11736090_SNP [dm3] 2R_15848585_SNP [dm6]	T	G	2.487e^-4	0.893	UTR_5_PRIME tun	TF binding site BDTNP1_TFBS_dl
3R	8102682	3R_8102682_SNP [dm3] 3R_12276960_SNP [dm6]	G	A	2.488e^-4	0.893	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8102707	3R_8102707_SNP [dm3] 3R_12276985_SNP [dm6]	T	C	2.488e^-4	0.893	INTRON svp
3R	19318332	3R_19318332_SNP [dm3] 3R_23492610_SNP [dm6]	G	T	2.495e^-4	0.893	INTERGENIC
2L	14918231	2L_14918231_SNP [dm3] 2L_14918231_SNP [dm6]	C	T	2.495e^-4	0.893	INTRON CG42313
3L	1406449	3L_1406449_SNP [dm3] 3L_1406449_SNP [dm6]	A	G	2.508e^-4	0.893	INTRON Ptp61F
2L	16852014	2L_16852014_SNP [dm3] 2L_16852014_SNP [dm6]	A	T	2.519e^-4	0.893	INTRON CG31810
3L	7379276	3L_7379276_SNP [dm3] 3L_7386176_SNP [dm6]	A	G	2.523e^-4	0.893	SYNONYMOUS_CODING CG8564 DOWNSTREAM smid	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	7924718	3R_7924718_DEL [dm3] 3R_12098996_DEL [dm6]	TGGCTT	T	2.526e^-4	0.893	INTRON dpr17	TF binding site mE1_TFBS_HSA
X	10212238	X_10212238_SNP [dm3] X_10318205_SNP [dm6]	C	T	2.526e^-4	0.893	INTRON alpha-Man-I
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	2.526e^-4	0.893	INTRON CG14877
2L	5910740	2L_5910740_SNP [dm3] 2L_5910740_SNP [dm6]	C	T	2.527e^-4	0.893	SYNONYMOUS_CODING bchs UPSTREAM CG14000	TF binding site BDTNP1_TFBS_da
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	2.536e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13665279	2L_13665279_SNP [dm3] 2L_13665279_SNP [dm6]	G	T	2.536e^-4	0.893	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	17577684	3R_17577684_SNP [dm3] 3R_21751962_SNP [dm6]	C	G	2.538e^-4	0.893	SYNONYMOUS_CODING CG31233	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12633969	3L_12633969_SNP [dm3] 3L_12640869_SNP [dm6]	A	T	2.551e^-4	0.893	INTRON CR32111
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	2.553e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5309484	2R_5309484_SNP [dm3] 2R_9421979_SNP [dm6]	A	C	2.555e^-4	0.893	UTR_3_PRIME CG13955	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	10897126	2R_10897126_SNP [dm3] 2R_15009621_SNP [dm6]	A	G	2.557e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18199780	2R_18199780_SNP [dm3] 2R_22312275_SNP [dm6]	A	C	2.558e^-4	0.893	UPSTREAM wdp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12822916	2R_12822916_SNP [dm3] 2R_16935411_SNP [dm6]	G	A	2.558e^-4	0.893	INTRON Pkc53E
3L	9395811	3L_9395811_SNP [dm3] 3L_9402711_SNP [dm6]	G	T	2.563e^-4	0.893	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19318423	3R_19318423_INS [dm3] 3R_23492701_INS [dm6]	T	TG	2.563e^-4	0.893	INTERGENIC
3R	20703453	3R_20703453_SNP [dm3] 3R_24877731_SNP [dm6]	A	C	2.577e^-4	0.893	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5688496	3L_5688496_SNP [dm3] 3L_5695396_SNP [dm6]	C	T	2.577e^-4	0.893	INTRON sif
X	18055024	X_18055024_SNP [dm3] X_18160991_SNP [dm6]	T	A	2.577e^-4	0.893	INTRON Frq1
2R	8093873	2R_8093873_SNP [dm3] 2R_12206368_SNP [dm6]	C	A	2.579e^-4	0.893	EXON CR45276	TF binding site mE1_TFBS_cad
2R	8115829	2R_8115829_SNP [dm3] 2R_12228324_SNP [dm6]	G	T	2.579e^-4	0.893	INTRON CG8854
2R	8946070	2R_8946070_SNP [dm3] 2R_13058565_SNP [dm6]	G	A	2.580e^-4	0.893	SYNONYMOUS_CODING Drl-2
2R	8113500	2R_8113500_SNP [dm3] 2R_12225995_SNP [dm6]	T	C	2.581e^-4	0.893	NON_SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	8127730	2R_8127730_SNP [dm3] 2R_12240225_SNP [dm6]	T	C	2.581e^-4	0.893	UPSTREAM CG13170 & 1 other INTERGENIC
3R	18435026	3R_18435026_SNP [dm3] 3R_22609304_SNP [dm6]	G	A	2.585e^-4	0.893	UPSTREAM CG13843 DOWNSTREAM Efa6 INTRON CG31156	TF binding site mE1_TFBS_inv
2R	8157362	2R_8157362_SNP [dm3] 2R_12269857_SNP [dm6]	C	A	2.586e^-4	0.893	INTRON Cam
2R	8090744	2R_8090744_SNP [dm3] 2R_12203239_SNP [dm6]	A	G	2.592e^-4	0.893	INTERGENIC
2R	8140713	2R_8140713_DEL [dm3] 2R_12253208_DEL [dm6]	TT	T	2.604e^-4	0.893	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16715132	2L_16715132_SNP [dm3] 2L_16715132_SNP [dm6]	G	A	2.615e^-4	0.893	UPSTREAM Cyt-c-d INTRON CG31808
2L	11917403	2L_11917403_SNP [dm3] 2L_11917403_SNP [dm6]	C	T	2.647e^-4	0.893	INTRON Pde1c
3L	13188174	3L_13188174_SNP [dm3] 3L_13195074_SNP [dm6]	C	G	2.649e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19323752	3R_19323752_SNP [dm3] 3R_23498030_SNP [dm6]	T	A	2.654e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1759152	3L_1759152_SNP [dm3] 3L_1759152_SNP [dm6]	C	A	2.658e^-4	0.893	UTR_3_PRIME CG8001 DOWNSTREAM Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14966475	2R_14966475_SNP [dm3] 2R_19078970_SNP [dm6]	T	G	2.664e^-4	0.893	INTRON 5-HT1A
2L	8472879	2L_8472879_SNP [dm3] 2L_8472879_SNP [dm6]	C	G	2.664e^-4	0.893	INTRON d
2L	7699578	2L_7699578_SNP [dm3] 2L_7699578_SNP [dm6]	T	C	2.666e^-4	0.893	NON_SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26063227	3R_26063227_SNP [dm3] 3R_30237505_SNP [dm6]	T	A	2.670e^-4	0.893	INTRON CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5963833	3R_5963833_SNP [dm3] 3R_10138111_SNP [dm6]	A	T	2.682e^-4	0.893	INTRON tws	TF binding site mE1_TFBS_bab1
2R	8116279	2R_8116279_SNP [dm3] 2R_12228774_SNP [dm6]	T	C	2.691e^-4	0.893	INTRON CG8854
2L	16205548	2L_16205548_SNP [dm3] 2L_16205548_SNP [dm6]	T	A	2.695e^-4	0.893	INTERGENIC
2R	8127924	2R_8127924_SNP [dm3] 2R_12240419_SNP [dm6]	T	C	2.710e^-4	0.893	NON_SYNONYMOUS_CODING CG13170 UPSTREAM CG43315
2R	8090760	2R_8090760_SNP [dm3] 2R_12203255_SNP [dm6]	C	T	2.711e^-4	0.893	INTERGENIC
3R	7924728	3R_7924728_SNP [dm3] 3R_12099006_SNP [dm6]	G	T	2.714e^-4	0.893	INTRON dpr17	TF binding site mE1_TFBS_HSA
2R	1318633	2R_1318633_SNP [dm3] 2R_5431128_SNP [dm6]	C	T	2.719e^-4	0.893	INTRON laccase2	transposable element FlyBase
3R	23957749	3R_23957749_SNP [dm3] 3R_28132027_SNP [dm6]	T	G	2.727e^-4	0.893	INTERGENIC
3L	20348361	3L_20348361_DEL [dm3] 3L_20355261_DEL [dm6]	TTT	T	2.732e^-4	0.893	INTRON CG5618	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2R	8964906	2R_8964906_SNP [dm3] 2R_13077401_SNP [dm6]	T	G	2.732e^-4	0.893	INTRON Drl-2	TF binding site mE1_TFBS_cad
2R	20262855	2R_20262855_SNP [dm3] 2R_24375332_SNP [dm6]	G	C	2.734e^-4	0.893	INTRON bs	TF binding site mE1_TFBS_chinmo
2R	8132370	2R_8132370_SNP [dm3] 2R_12244865_SNP [dm6]	G	A	2.743e^-4	0.893	UPSTREAM CG43244 INTERGENIC
2L	6972717	2L_6972717_SNP [dm3] 2L_6972717_SNP [dm6]	C	T	2.744e^-4	0.893	UPSTREAM snRNP-U1-70K DOWNSTREAM uif EXON CR43142	TF binding site BDTNP1_TFBS_dl
2L	14978970	2L_14978970_SNP [dm3] 2L_14978970_SNP [dm6]	A	C	2.752e^-4	0.893	INTRON mol
2R	11998089	2R_11998089_SNP [dm3] 2R_16110584_SNP [dm6]	A	G	2.782e^-4	0.893	START_GAINED Asph UTR_5_PRIME Asph UPSTREAM Ric	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11998090	2R_11998090_SNP [dm3] 2R_16110585_SNP [dm6]	T	A	2.782e^-4	0.893	UTR_5_PRIME Asph UPSTREAM Ric	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21264835	3R_21264835_SNP [dm3] 3R_25439113_SNP [dm6]	C	T	2.782e^-4	0.893	INTRON Fur1
2R	19666086	2R_19666086_SNP [dm3] 2R_23778563_SNP [dm6]	C	A	2.790e^-4	0.893	INTRON CG9850
X	10209743	X_10209743_SNP [dm3] X_10315710_SNP [dm6]	A	G	2.792e^-4	0.893	INTRON alpha-Man-I
3R	26264974	3R_26264974_SNP [dm3] 3R_30439252_SNP [dm6]	G	A	2.794e^-4	0.893	INTRON CG15537
3R	3513428	3R_3513428_SNP [dm3] 3R_7687706_SNP [dm6]	C	T	2.796e^-4	0.893	INTRON Nlg1
X	16032282	X_16032282_SNP [dm3] X_16138249_SNP [dm6]	G	A	2.798e^-4	0.893	INTRON disco-r
2L	3682927	2L_3682927_SNP [dm3] 2L_3682927_SNP [dm6]	G	T	2.798e^-4	0.893	INTRON CG34340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1331014	3L_1331014_SNP [dm3] 3L_1331014_SNP [dm6]	T	A	2.799e^-4	0.893	UPSTREAM msd1 INTRON mtacp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8090624	2R_8090624_SNP [dm3] 2R_12203119_SNP [dm6]	G	A	2.812e^-4	0.893	INTERGENIC
3R	7734023	3R_7734023_SNP [dm3] 3R_11908301_SNP [dm6]	C	G	2.812e^-4	0.893	INTRON Cad87A
3R	14670840	3R_14670840_SNP [dm3] 3R_18845118_SNP [dm6]	T	A	2.817e^-4	0.893	INTRON CG18208
2R	8093965	2R_8093965_SNP [dm3] 2R_12206460_SNP [dm6]	G	C	2.820e^-4	0.893	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8109605	2R_8109605_SNP [dm3] 2R_12222100_SNP [dm6]	C	A	2.822e^-4	0.893	INTERGENIC
2R	20263101	2R_20263101_SNP [dm3] 2R_24375578_SNP [dm6]	A	C	2.828e^-4	0.893	NON_SYNONYMOUS_CODING bs	TF binding site mE1_TFBS_chinmo
3L	12188215	3L_12188215_SNP [dm3] 3L_12195115_SNP [dm6]	C	T	2.832e^-4	0.893	DOWNSTREAM CR45746 INTERGENIC
3R	9727161	3R_9727161_SNP [dm3] 3R_13901439_SNP [dm6]	A	C	2.838e^-4	0.893	UPSTREAM ems INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12213474	X_12213474_DEL [dm3] X_12319441_DEL [dm6]	TCAAACTGTTTATAAGTT...	T	2.844e^-4	0.893	INTRON Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15744130	3L_15744130_INS [dm3] 3L_15751030_INS [dm6]	C	CGGGC	2.851e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	3803521	3R_3803521_SNP [dm3] 3R_7977799_SNP [dm6]	A	T	2.852e^-4	0.893	UPSTREAM CD98hc INTRON CD98hc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	21257905	3R_21257905_SNP [dm3] 3R_25432183_SNP [dm6]	T	A	2.855e^-4	0.893	INTRON Fur1
3R	19323247	3R_19323247_SNP [dm3] 3R_23497525_SNP [dm6]	C	G	2.856e^-4	0.893	INTERGENIC
3L	14958629	3L_14958629_SNP [dm3] 3L_14965529_SNP [dm6]	C	T	2.861e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14903771	3R_14903771_SNP [dm3] 3R_19078049_SNP [dm6]	T	A	2.862e^-4	0.893	INTRON cdi
3L	4805502	3L_4805502_SNP [dm3] 3L_4805502_SNP [dm6]	C	T	2.864e^-4	0.893	UPSTREAM CG7509 DOWNSTREAM CG18808 INTERGENIC
2R	8111212	2R_8111212_SNP [dm3] 2R_12223707_SNP [dm6]	A	C	2.871e^-4	0.893	DOWNSTREAM CG8854 INTERGENIC
3R	6659902	3R_6659902_DEL [dm3] 3R_10834180_DEL [dm6]	GCTCCAG	G	2.876e^-4	0.893	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20263387	2R_20263387_SNP [dm3] 2R_24375864_SNP [dm6]	A	G	2.881e^-4	0.893	SYNONYMOUS_CODING bs	TF binding site mE1_TFBS_chinmo
2R	8090739	2R_8090739_SNP [dm3] 2R_12203234_SNP [dm6]	G	A	2.882e^-4	0.893	INTERGENIC
3R	14326340	3R_14326340_SNP [dm3] 3R_18500618_SNP [dm6]	T	C	2.885e^-4	0.893	INTRON fru
2R	12553067	2R_12553067_SNP [dm3] 2R_16665562_SNP [dm6]	T	C	2.896e^-4	0.893	INTRON Picot
X	5191323	X_5191323_SNP [dm3] X_5297290_SNP [dm6]	G	A	2.911e^-4	0.893	INTRON CG42749
2R	8110964	2R_8110964_SNP [dm3] 2R_12223459_SNP [dm6]	A	T	2.922e^-4	0.893	INTERGENIC
3L	19217897	3L_19217897_SNP [dm3] 3L_19224797_SNP [dm6]	G	A	2.923e^-4	0.893	INTRON fz2
3R	13197931	3R_13197931_SNP [dm3] 3R_17372209_SNP [dm6]	C	G	2.930e^-4	0.893	UPSTREAM CR44256 INTERGENIC
3R	21585441	3R_21585441_SNP [dm3] 3R_25759719_SNP [dm6]	T	A	2.934e^-4	0.893	INTRON LpR1
2R	8121485	2R_8121485_SNP [dm3] 2R_12233980_SNP [dm6]	T	C	2.940e^-4	0.893	DOWNSTREAM CR44313 INTERGENIC
3L	12182730	3L_12182730_SNP [dm3] 3L_12189630_SNP [dm6]	A	G	2.943e^-4	0.893	NON_SYNONYMOUS_CODING Est-6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8731849	X_8731849_SNP [dm3] X_8837816_SNP [dm6]	A	T	2.951e^-4	0.893	UPSTREAM CG12075 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	9416416	3L_9416416_SNP [dm3] 3L_9423316_SNP [dm6]	C	T	2.952e^-4	0.893	UTR_5_PRIME aay INTRON CG3967	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9186394	2R_9186394_SNP [dm3] 2R_13298889_SNP [dm6]	T	C	2.953e^-4	0.893	UPSTREAM CG17047 & 1 other INTERGENIC
2L	5596275	2L_5596275_SNP [dm3] 2L_5596275_SNP [dm6]	A	G	2.953e^-4	0.893	UPSTREAM CG18266 INTERGENIC
3R	16943211	3R_16943211_SNP [dm3] 3R_21117489_SNP [dm6]	T	C	2.954e^-4	0.893	SYNONYMOUS_CODING ppan DOWNSTREAM Bdbt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16715572	X_16715572_SNP [dm3] X_16821539_SNP [dm6]	T	C	2.955e^-4	0.893	INTRON CG4829
2L	11276558	2L_11276558_SNP [dm3] 2L_11276558_SNP [dm6]	G	C	2.961e^-4	0.893	INTRON cana
2R	8174711	2R_8174711_SNP [dm3] 2R_12287206_SNP [dm6]	G	T	2.964e^-4	0.893	INTRON CG42700
3L	12186046	3L_12186046_SNP [dm3] 3L_12192946_SNP [dm6]	T	C	2.972e^-4	0.893	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11293692	3R_11293692_SNP [dm3] 3R_15467970_SNP [dm6]	T	C	2.974e^-4	0.893	INTRON AdamTS-A
2L	3682946	2L_3682946_SNP [dm3] 2L_3682946_SNP [dm6]	G	A	2.981e^-4	0.893	INTRON CG34340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12464851	3L_12464851_INS [dm3] 3L_12471751_INS [dm6]	G	GG	2.983e^-4	0.893	UTR_5_PRIME CG10616	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	8555039	2R_8555039_SNP [dm3] 2R_12667534_SNP [dm6]	A	G	2.986e^-4	0.893	INTRON nemy
3L	1608470	3L_1608470_SNP [dm3] 3L_1608470_SNP [dm6]	C	A	2.988e^-4	0.893	INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16054803	2R_16054803_SNP [dm3] 2R_20167298_SNP [dm6]	G	A	2.992e^-4	0.893	INTERGENIC
X	5920643	X_5920643_SNP [dm3] X_6026610_SNP [dm6]	T	C	2.996e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	16016325	3L_16016325_SNP [dm3] 3L_16023225_SNP [dm6]	G	T	3.006e^-4	0.893	UPSTREAM Notum INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	3.008e^-4	0.893	INTERGENIC
2R	8148358	2R_8148358_SNP [dm3] 2R_12260853_SNP [dm6]	T	A	3.017e^-4	0.893	DOWNSTREAM CR43900 INTRON Cam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	16153649	2L_16153649_SNP [dm3] 2L_16153649_SNP [dm6]	G	A	3.020e^-4	0.893	INTERGENIC
3L	13188108	3L_13188108_SNP [dm3] 3L_13195008_SNP [dm6]	G	C	3.021e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10897084	2R_10897084_SNP [dm3] 2R_15009579_SNP [dm6]	A	C	3.023e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8113333	2R_8113333_SNP [dm3] 2R_12225828_SNP [dm6]	C	T	3.035e^-4	0.893	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8121636	2R_8121636_SNP [dm3] 2R_12234131_SNP [dm6]	G	A	3.043e^-4	0.893	EXON CR44313
X	10809696	X_10809696_SNP [dm3] X_10915663_SNP [dm6]	C	G	3.051e^-4	0.893	SYNONYMOUS_CODING CG43901 INTRON CG43901	TF binding site mE1_TFBS_chinmo
3L	9304952	3L_9304952_SNP [dm3] 3L_9311852_SNP [dm6]	A	T	3.055e^-4	0.893	INTERGENIC
3R	21264896	3R_21264896_SNP [dm3] 3R_25439174_SNP [dm6]	G	C	3.056e^-4	0.893	INTRON Fur1
2R	8093885	2R_8093885_SNP [dm3] 2R_12206380_SNP [dm6]	T	G	3.058e^-4	0.893	EXON CR45276	TF binding site mE1_TFBS_cad
3L	14204336	3L_14204336_DEL [dm3] 3L_14211236_DEL [dm6]	AG	T	3.066e^-4	0.893	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	17530386	2R_17530386_SNP [dm3] 2R_21642881_SNP [dm6]	G	A	3.072e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8111017	2R_8111017_SNP [dm3] 2R_12223512_SNP [dm6]	G	C	3.074e^-4	0.893	DOWNSTREAM CG8854 INTERGENIC
3R	6079522	3R_6079522_SNP [dm3] 3R_10253800_SNP [dm6]	T	C	3.080e^-4	0.893	SYNONYMOUS_CODING CG3999	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17279360	3R_17279360_SNP [dm3] 3R_21453638_SNP [dm6]	C	T	3.084e^-4	0.893	INTERGENIC
2R	8117910	2R_8117910_SNP [dm3] 2R_12230405_SNP [dm6]	C	G	3.085e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8150296	2R_8150296_INS [dm3] 2R_12262791_INS [dm6]	A	AGTTAAGA	3.088e^-4	0.893	INTRON Cam
2R	8110981	2R_8110981_SNP [dm3] 2R_12223476_SNP [dm6]	T	C	3.098e^-4	0.893	DOWNSTREAM CG8854 INTERGENIC
3R	8513502	3R_8513502_SNP [dm3] 3R_12687780_SNP [dm6]	A	G	3.101e^-4	0.893	SYNONYMOUS_CODING kar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17102099	X_17102099_SNP [dm3] X_17208066_SNP [dm6]	A	T	3.106e^-4	0.893	UPSTREAM CG32563 DOWNSTREAM CG32564 INTERGENIC
2L	13666509	2L_13666509_SNP [dm3] 2L_13666509_SNP [dm6]	A	T	3.107e^-4	0.893	INTRON CG18507	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19294861	3R_19294861_SNP [dm3] 3R_23469139_SNP [dm6]	G	A	3.126e^-4	0.893	INTRON CG4374
3R	8102838	3R_8102838_SNP [dm3] 3R_12277116_SNP [dm6]	T	C	3.127e^-4	0.893	INTRON svp
3L	2034293	3L_2034293_INS [dm3] 3L_2034293_INS [dm6]	C	CC	3.133e^-4	0.893	INTERGENIC
2L	11223103	2L_11223103_INS [dm3] 2L_11223103_INS [dm6]	A	AGTGGTTGATATGAA...	3.134e^-4	0.893	INTRON ab
2R	9127467	2R_9127467_INS [dm3] 2R_13239962_INS [dm6]	G	GGATTTGCTCGA...	3.135e^-4	0.893	UPSTREAM CG4679 INTRON GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2612354	2L_2612354_SNP [dm3] 2L_2612354_SNP [dm6]	T	C	3.137e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12884403	2R_12884403_SNP [dm3] 2R_16996898_SNP [dm6]	A	T	3.139e^-4	0.893	UTR_3_PRIME ste24c DOWNSTREAM Cbp53E INTRON ste24c & 1 other
3L	20395086	3L_20395086_SNP [dm3] 3L_20401986_SNP [dm6]	C	T	3.143e^-4	0.893	UPSTREAM trbl INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6418369	2L_6418369_SNP [dm3] 2L_6418369_SNP [dm6]	C	T	3.146e^-4	0.893	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_chinmo
3R	4109269	3R_4109269_SNP [dm3] 3R_8283547_SNP [dm6]	T	A	3.153e^-4	0.893	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
3R	8110711	3R_8110711_DEL [dm3] 3R_12284989_DEL [dm6]	AA	A	3.154e^-4	0.893	INTRON svp
2L	528292	2L_528292_SNP [dm3] 2L_528292_SNP [dm6]	C	G	3.162e^-4	0.893	INTRON ush	regulatory region REDfly_CRMs
3L	9487053	3L_9487053_SNP [dm3] 3L_9493953_SNP [dm6]	G	A	3.162e^-4	0.893	DOWNSTREAM path INTERGENIC
3L	18359643	3L_18359643_SNP [dm3] 3L_18366543_SNP [dm6]	T	G	3.163e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	526867	2R_526867_SNP [dm3] 2R_4639362_SNP [dm6]	G	A	3.168e^-4	0.893	INTERGENIC	transposable element FlyBase
3R	20703516	3R_20703516_SNP [dm3] 3R_24877794_SNP [dm6]	A	T	3.181e^-4	0.893	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	13182667	X_13182667_SNP [dm3] X_13288634_SNP [dm6]	T	C	3.182e^-4	0.893	DOWNSTREAM CG15743 INTRON CG15744	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	2952830	3L_2952830_SNP [dm3] 3L_2952830_SNP [dm6]	A	G	3.183e^-4	0.893	INTRON Shab
3R	26847406	3R_26847406_SNP [dm3] 3R_31021684_SNP [dm6]	A	C	3.185e^-4	0.893	INTERGENIC
2R	8084645	2R_8084645_SNP [dm3] 2R_12197140_SNP [dm6]	G	A	3.189e^-4	0.893	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
2R	8090765	2R_8090765_SNP [dm3] 2R_12203260_SNP [dm6]	C	T	3.190e^-4	0.893	INTERGENIC
X	9781003	X_9781003_SNP [dm3] X_9886970_SNP [dm6]	C	T	3.192e^-4	0.893	INTERGENIC
3R	25831481	3R_25831481_SNP [dm3] 3R_30005759_SNP [dm6]	T	A	3.200e^-4	0.893	UPSTREAM CG7911 DOWNSTREAM CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6094675	3R_6094675_SNP [dm3] 3R_10268953_SNP [dm6]	C	T	3.211e^-4	0.893	INTRON CG43143	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	5028586	2L_5028586_SNP [dm3] 2L_5028586_SNP [dm6]	T	A	3.218e^-4	0.893	UPSTREAM vkg INTERGENIC	regulatory region REDfly_CRMs
3R	9727121	3R_9727121_SNP [dm3] 3R_13901399_SNP [dm6]	C	T	3.221e^-4	0.893	UPSTREAM ems INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8105599	3R_8105599_SNP [dm3] 3R_12279877_SNP [dm6]	A	T	3.226e^-4	0.893	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	8514157	3R_8514157_SNP [dm3] 3R_12688435_SNP [dm6]	G	A	3.229e^-4	0.893	INTRON kar
3R	13416083	3R_13416083_SNP [dm3] 3R_17590361_SNP [dm6]	G	A	3.231e^-4	0.893	INTERGENIC
3R	25398623	3R_25398623_SNP [dm3] 3R_29572901_SNP [dm6]	G	A	3.235e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13246656	3L_13246656_SNP [dm3] 3L_13253556_SNP [dm6]	T	C	3.236e^-4	0.893	INTRON caps	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18203522	2R_18203522_SNP [dm3] 2R_22316017_SNP [dm6]	A	T	3.237e^-4	0.893	INTRON CR44758
3L	2313559	3L_2313559_SNP [dm3] 3L_2313559_SNP [dm6]	G	A	3.243e^-4	0.893	INTERGENIC
3R	14671269	3R_14671269_SNP [dm3] 3R_18845547_SNP [dm6]	A	C	3.245e^-4	0.893	INTRON CG18208
3R	6078375	3R_6078375_SNP [dm3] 3R_10252653_SNP [dm6]	G	A	3.246e^-4	0.893	NON_SYNONYMOUS_CODING CG3999
3L	9395767	3L_9395767_SNP [dm3] 3L_9402667_SNP [dm6]	A	T	3.249e^-4	0.893	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14916906	2L_14916906_SNP [dm3] 2L_14916906_SNP [dm6]	A	T	3.250e^-4	0.893	INTRON CG42313
2L	7699603	2L_7699603_SNP [dm3] 2L_7699603_SNP [dm6]	G	A	3.250e^-4	0.893	SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1327695	3L_1327695_SNP [dm3] 3L_1327695_SNP [dm6]	T	C	3.265e^-4	0.894	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9152299	2R_9152299_SNP [dm3] 2R_13264794_SNP [dm6]	T	C	3.266e^-4	0.894	SYNONYMOUS_CODING CG42319 DOWNSTREAM CG42319
2L	7699517	2L_7699517_SNP [dm3] 2L_7699517_SNP [dm6]	C	G	3.278e^-4	0.896	NON_SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5811132	3L_5811132_SNP [dm3] 3L_5818032_SNP [dm6]	G	T	3.284e^-4	0.896	SPLICE_SITE_REGION vn INTRON vn
3R	25831464	3R_25831464_DEL [dm3] 3R_30005742_DEL [dm6]	TTTT	T	3.291e^-4	0.897	UPSTREAM CG7911 DOWNSTREAM CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14918417	2L_14918417_SNP [dm3] 2L_14918417_SNP [dm6]	A	G	3.304e^-4	0.899	INTRON CG42313
2L	6233604	2L_6233604_SNP [dm3] 2L_6233604_SNP [dm6]	G	A	3.318e^-4	0.899	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12078105	2R_12078105_SNP [dm3] 2R_16190600_SNP [dm6]	T	C	3.318e^-4	0.899	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18930613	3R_18930613_SNP [dm3] 3R_23104891_SNP [dm6]	T	C	3.320e^-4	0.899	INTRON CG13830
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	3.321e^-4	0.899	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
3R	18982340	3R_18982340_SNP [dm3] 3R_23156618_SNP [dm6]	G	T	3.332e^-4	0.899	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	7737420	3R_7737420_SNP [dm3] 3R_11911698_SNP [dm6]	G	A	3.340e^-4	0.899	INTRON Cad87A
2L	5667314	2L_5667314_SNP [dm3] 2L_5667314_SNP [dm6]	G	T	3.343e^-4	0.899	INTRON Hsp60C
2L	16053025	2L_16053025_SNP [dm3] 2L_16053025_SNP [dm6]	G	A	3.345e^-4	0.899	INTRON beat-Ia
2R	9892999	2R_9892999_SNP [dm3] 2R_14005494_SNP [dm6]	A	G	3.351e^-4	0.899	DOWNSTREAM mir-4978 INTRON mam
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	3.353e^-4	0.899	INTERGENIC
3L	14288732	3L_14288732_DEL [dm3] 3L_14295632_DEL [dm6]	TGTT	T	3.358e^-4	0.899	INTRON fz
X	11578971	X_11578971_SNP [dm3] X_11684938_SNP [dm6]	A	T	3.362e^-4	0.899	INTRON bif
X	10211745	X_10211745_SNP [dm3] X_10317712_SNP [dm6]	C	T	3.377e^-4	0.901	INTRON alpha-Man-I
3L	5906475	3L_5906475_SNP [dm3] 3L_5913375_SNP [dm6]	C	T	3.381e^-4	0.901	INTRON CG13288
2R	9139434	2R_9139434_SNP [dm3] 2R_13251929_SNP [dm6]	A	C	3.385e^-4	0.901	SYNONYMOUS_CODING CG4714 UPSTREAM CG4712	TF binding site mE1_TFBS_cad
3R	5866038	3R_5866038_SNP [dm3] 3R_10040316_SNP [dm6]	T	C	3.390e^-4	0.901	INTRON Mical
2L	14925574	2L_14925574_SNP [dm3] 2L_14925574_SNP [dm6]	T	A	3.394e^-4	0.901	SYNONYMOUS_CODING CG3491 INTRON CG42313
3R	25473897	3R_25473897_SNP [dm3] 3R_29648175_SNP [dm6]	A	T	3.396e^-4	0.901	INTRON Dop1R2
3L	20347848	3L_20347848_SNP [dm3] 3L_20354748_SNP [dm6]	C	T	3.400e^-4	0.901	DOWNSTREAM eRF1 INTRON CG5618
2R	8108827	2R_8108827_SNP [dm3] 2R_12221322_SNP [dm6]	A	T	3.426e^-4	0.904	INTERGENIC
3R	7740802	3R_7740802_SNP [dm3] 3R_11915080_SNP [dm6]	G	A	3.431e^-4	0.904	INTRON Cad87A
3R	4961561	3R_4961561_SNP [dm3] 3R_9135839_SNP [dm6]	T	A	3.442e^-4	0.904	INTRON pum
2R	19386827	2R_19386827_SNP [dm3] 2R_23499304_SNP [dm6]	C	G	3.446e^-4	0.904	UPSTREAM CG13558 INTERGENIC
2R	8172504	2R_8172504_SNP [dm3] 2R_12284999_SNP [dm6]	T	A	3.460e^-4	0.904	INTRON CG42700
3R	8114699	3R_8114699_INS [dm3] 3R_12288977_INS [dm6]	A	AAAAAAAAAAAAG...	3.462e^-4	0.904	INTRON svp
3R	8114702	3R_8114702_MNP [dm3] 3R_12288980_MNP [dm6]	GTGT	AAAA	3.462e^-4	0.904	INTRON svp
3R	12576454	3R_12576454_SNP [dm3] 3R_16750732_SNP [dm6]	T	G	3.467e^-4	0.904	DOWNSTREAM CG31275 INTRON bxd	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	22581841	3R_22581841_SNP [dm3] 3R_26756119_SNP [dm6]	T	A	3.474e^-4	0.904	DOWNSTREAM CR45562 INTERGENIC
X	1250841	X_1250841_SNP [dm3] X_1356808_SNP [dm6]	G	A	3.487e^-4	0.904	SYNONYMOUS_CODING png DOWNSTREAM CG11417	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18983828	3R_18983828_SNP [dm3] 3R_23158106_SNP [dm6]	A	G	3.492e^-4	0.904	UTR_3_PRIME VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	8078685	2R_8078685_SNP [dm3] 2R_12191180_SNP [dm6]	G	A	3.506e^-4	0.904	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3L	4881977	3L_4881977_SNP [dm3] 3L_4881977_SNP [dm6]	C	G	3.507e^-4	0.904	INTRON CG17150
2L	2574828	2L_2574828_SNP [dm3] 2L_2574828_SNP [dm6]	A	T	3.515e^-4	0.904	DOWNSTREAM insv INTRON Rad1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	19096461	3L_19096461_DEL [dm3] 3L_19103361_DEL [dm6]	ATGGCAAAACCGA...	A	3.515e^-4	0.904	INTERGENIC
3R	6094882	3R_6094882_SNP [dm3] 3R_10269160_SNP [dm6]	C	T	3.517e^-4	0.904	INTRON CG43143
2R	8172592	2R_8172592_SNP [dm3] 2R_12285087_SNP [dm6]	C	G	3.517e^-4	0.904	UPSTREAM CG42700 INTRON CG42700
2R	8172696	2R_8172696_SNP [dm3] 2R_12285191_SNP [dm6]	T	C	3.517e^-4	0.904	UPSTREAM CG42700 INTRON CG42700
3R	15973823	3R_15973823_DEL [dm3] 3R_20148101_DEL [dm6]	CT	A	3.520e^-4	0.904	INTERGENIC
2L	12172859	2L_12172859_DEL [dm3] 2L_12172859_DEL [dm6]	TA	T	3.529e^-4	0.904	UPSTREAM crok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11411934	2L_11411934_SNP [dm3] 2L_11411934_SNP [dm6]	T	A	3.532e^-4	0.904	INTERGENIC	regulatory region REDfly_CRMs
2L	1451794	2L_1451794_DEL [dm3] 2L_1451794_DEL [dm6]	AA	A	3.537e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13505551	2R_13505551_SNP [dm3] 2R_17618046_SNP [dm6]	G	T	3.538e^-4	0.904	UPSTREAM CG44403 INTRON CG10936
3R	19743105	3R_19743105_SNP [dm3] 3R_23917383_SNP [dm6]	G	A	3.559e^-4	0.904	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2480035	3L_2480035_SNP [dm3] 3L_2480035_SNP [dm6]	A	G	3.575e^-4	0.904	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
3R	3800389	3R_3800389_SNP [dm3] 3R_7974667_SNP [dm6]	G	A	3.581e^-4	0.904	SYNONYMOUS_CODING CD98hc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8101919	2R_8101919_SNP [dm3] 2R_12214414_SNP [dm6]	T	C	3.583e^-4	0.904	DOWNSTREAM CG13171 INTERGENIC
3L	4860840	3L_4860840_DEL [dm3] 3L_4860840_DEL [dm6]	AAA	A	3.587e^-4	0.904	UPSTREAM CG17150 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	7384283	2R_7384283_SNP [dm3] 2R_11496778_SNP [dm6]	C	A	3.590e^-4	0.904	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10152946	2R_10152946_SNP [dm3] 2R_14265441_SNP [dm6]	G	T	3.599e^-4	0.904	INTRON CG8547
3L	2787247	3L_2787247_SNP [dm3] 3L_2787247_SNP [dm6]	T	A	3.600e^-4	0.904	UTR_3_PRIME CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25604341	3R_25604341_SNP [dm3] 3R_29778619_SNP [dm6]	C	T	3.603e^-4	0.904	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	4926648	2L_4926648_INS [dm3] 2L_4926648_INS [dm6]	T	TT	3.628e^-4	0.904	INTRON hoe1
X	7139286	X_7139286_INS [dm3] X_7245253_INS [dm6]	A	AC	3.636e^-4	0.904	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
2R	9188043	2R_9188043_SNP [dm3] 2R_13300538_SNP [dm6]	C	T	3.639e^-4	0.904	SYNONYMOUS_CODING CG17047
2R	8121641	2R_8121641_INS [dm3] 2R_12234136_INS [dm6]	T	AA	3.645e^-4	0.904	EXON CR44313
3L	9395701	3L_9395701_SNP [dm3] 3L_9402601_SNP [dm6]	G	A	3.646e^-4	0.904	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13839133	2L_13839133_SNP [dm3] 2L_13839133_SNP [dm6]	G	T	3.649e^-4	0.904	DOWNSTREAM CG33307 INTRON CenG1A
2R	8113999	2R_8113999_SNP [dm3] 2R_12226494_SNP [dm6]	C	G	3.649e^-4	0.904	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6418399	2L_6418399_SNP [dm3] 2L_6418399_SNP [dm6]	C	T	3.651e^-4	0.904	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_chinmo
3L	10552147	3L_10552147_SNP [dm3] 3L_10559047_SNP [dm6]	C	T	3.653e^-4	0.904	UTR_5_PRIME CG6527 INTRON A2bp1
X	9180000	X_9180000_SNP [dm3] X_9285967_SNP [dm6]	C	T	3.657e^-4	0.904	NON_SYNONYMOUS_CODING lz
2L	9258165	2L_9258165_SNP [dm3] 2L_9258165_SNP [dm6]	C	T	3.660e^-4	0.904	INTRON Ggamma30A
3R	21675747	3R_21675747_SNP [dm3] 3R_25850025_SNP [dm6]	A	C	3.662e^-4	0.904	DOWNSTREAM CG14545 INTERGENIC
3L	12939417	3L_12939417_SNP [dm3] 3L_12946317_SNP [dm6]	G	T	3.669e^-4	0.904	INTERGENIC
3R	9138571	3R_9138571_SNP [dm3] 3R_13312849_SNP [dm6]	C	A	3.673e^-4	0.904	DOWNSTREAM CG44142 & 1 other INTERGENIC
2R	14494202	2R_14494202_SNP [dm3] 2R_18606697_SNP [dm6]	A	G	3.701e^-4	0.904	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	7515740	2L_7515740_SNP [dm3] 2L_7515740_SNP [dm6]	C	A	3.703e^-4	0.904	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_D
2L	11917753	2L_11917753_SNP [dm3] 2L_11917753_SNP [dm6]	T	C	3.709e^-4	0.904	INTRON Pde1c
2R	17736022	2R_17736022_SNP [dm3] 2R_21848517_SNP [dm6]	C	T	3.712e^-4	0.904	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site mE1_TFBS_cad
2R	9849005	2R_9849005_DEL [dm3] 2R_13961500_DEL [dm6]	ATATTTACAAA...	A	3.728e^-4	0.904	INTRON Cp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8117907	2R_8117907_SNP [dm3] 2R_12230402_SNP [dm6]	T	G	3.729e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	7406935	2R_7406935_SNP [dm3] 2R_11519430_SNP [dm6]	G	A	3.732e^-4	0.904	INTERGENIC
X	6011532	X_6011532_SNP [dm3] X_6117499_SNP [dm6]	A	C	3.734e^-4	0.904	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl
3R	14671221	3R_14671221_SNP [dm3] 3R_18845499_SNP [dm6]	T	A	3.742e^-4	0.904	INTRON CG18208
3L	21581659	3L_21581659_SNP [dm3] 3L_21588559_SNP [dm6]	C	T	3.744e^-4	0.904	INTRON TfAP-2
3L	15519279	3L_15519279_SNP [dm3] 3L_15526179_SNP [dm6]	A	C	3.754e^-4	0.904	UPSTREAM CG33986 DOWNSTREAM CG42729 INTRON CG33985
3R	7924689	3R_7924689_SNP [dm3] 3R_12098967_SNP [dm6]	A	C	3.756e^-4	0.904	INTRON dpr17	TF binding site mE1_TFBS_HSA
2R	8128498	2R_8128498_SNP [dm3] 2R_12240993_SNP [dm6]	T	G	3.758e^-4	0.904	UPSTREAM CG43315 DOWNSTREAM CG13170 INTERGENIC
3L	1457496	3L_1457496_SNP [dm3] 3L_1457496_SNP [dm6]	G	C	3.766e^-4	0.904	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	9396676	3L_9396676_SNP [dm3] 3L_9403576_SNP [dm6]	G	A	3.775e^-4	0.904	INTERGENIC
2L	9150225	2L_9150225_SNP [dm3] 2L_9150225_SNP [dm6]	G	C	3.780e^-4	0.904	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	9661767	X_9661767_SNP [dm3] X_9767734_SNP [dm6]	G	A	3.814e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3797216	3R_3797216_SNP [dm3] 3R_7971494_SNP [dm6]	C	T	3.822e^-4	0.904	INTERGENIC
3L	10472520	3L_10472520_INS [dm3] 3L_10479420_INS [dm6]	T	TAT	3.828e^-4	0.904	INTERGENIC
3R	7737474	3R_7737474_SNP [dm3] 3R_11911752_SNP [dm6]	C	T	3.830e^-4	0.904	INTRON Cad87A
2R	20185523	2R_20185523_SNP [dm3] 2R_24298000_SNP [dm6]	G	A	3.842e^-4	0.904	UTR_3_PRIME CG3394	TF binding site mE1_TFBS_chinmo
3L	5463825	3L_5463825_SNP [dm3] 3L_5470725_SNP [dm6]	T	C	3.843e^-4	0.904	INTERGENIC
3L	1330171	3L_1330171_SNP [dm3] 3L_1330171_SNP [dm6]	A	T	3.854e^-4	0.904	NON_SYNONYMOUS_CODING mtacp1 DOWNSTREAM Myo61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	9553217	2R_9553217_SNP [dm3] 2R_13665712_SNP [dm6]	G	A	3.856e^-4	0.904	NON_SYNONYMOUS_CODING CG13337 INTRON fas
2R	18236089	2R_18236089_SNP [dm3] 2R_22348584_SNP [dm6]	C	T	3.866e^-4	0.904	NON_SYNONYMOUS_CODING CG11298 INTRON Liprin-gamma
3R	25818024	3R_25818024_SNP [dm3] 3R_29992302_SNP [dm6]	A	G	3.874e^-4	0.904	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14031060	3R_14031060_SNP [dm3] 3R_18205338_SNP [dm6]	C	T	3.875e^-4	0.904	INTRON CG7985
X	7139271	X_7139271_SNP [dm3] X_7245238_SNP [dm6]	A	T	3.877e^-4	0.904	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
X	6534700	X_6534700_SNP [dm3] X_6640667_SNP [dm6]	T	C	3.878e^-4	0.904	INTRON pigs
2L	12418488	2L_12418488_SNP [dm3] 2L_12418488_SNP [dm6]	A	G	3.883e^-4	0.904	INTRON vir-1
2R	4694498	2R_4694498_SNP [dm3] 2R_8806993_SNP [dm6]	T	A	3.887e^-4	0.904	INTRON sns
2L	1604790	2L_1604790_SNP [dm3] 2L_1604790_SNP [dm6]	T	A	3.890e^-4	0.904	SYNONYMOUS_CODING haf INTRON CG31935
3R	14825499	3R_14825499_SNP [dm3] 3R_18999777_SNP [dm6]	T	C	3.892e^-4	0.904	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10132163	2R_10132163_SNP [dm3] 2R_14244658_SNP [dm6]	G	A	3.894e^-4	0.904	INTRON CG8503
3R	21614485	3R_21614485_SNP [dm3] 3R_25788763_SNP [dm6]	T	G	3.909e^-4	0.904	NON_SYNONYMOUS_CODING CG31380
3L	1326679	3L_1326679_SNP [dm3] 3L_1326679_SNP [dm6]	A	C	3.919e^-4	0.904	SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1318624	2R_1318624_SNP [dm3] 2R_5431119_SNP [dm6]	A	G	3.933e^-4	0.904	INTRON laccase2	transposable element FlyBase
3L	16930815	3L_16930815_SNP [dm3] 3L_16937715_SNP [dm6]	G	A	3.934e^-4	0.904	DOWNSTREAM CG13022 INTERGENIC
X	7812923	X_7812923_SNP [dm3] X_7918890_SNP [dm6]	T	C	3.939e^-4	0.904	NON_SYNONYMOUS_CODING hdm DOWNSTREAM snz	TF binding site mE1_TFBS_chinmo
3L	20384384	3L_20384384_SNP [dm3] 3L_20391284_SNP [dm6]	A	G	3.949e^-4	0.904	UTR_3_PRIME fbl DOWNSTREAM CG33969 EXON CR43944
2L	5717452	2L_5717452_SNP [dm3] 2L_5717452_SNP [dm6]	G	T	3.951e^-4	0.904	UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
2R	14449971	2R_14449971_SNP [dm3] 2R_18562466_SNP [dm6]	T	C	3.953e^-4	0.904	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8145003	2R_8145003_SNP [dm3] 2R_12257498_SNP [dm6]	T	G	3.957e^-4	0.904	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
2L	3682758	2L_3682758_SNP [dm3] 2L_3682758_SNP [dm6]	C	G	3.970e^-4	0.904	INTRON CG34340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9731624	3L_9731624_SNP [dm3] 3L_9738524_SNP [dm6]	C	G	3.971e^-4	0.904	INTRON CG42268
3R	20351934	3R_20351934_SNP [dm3] 3R_24526212_SNP [dm6]	C	A	3.971e^-4	0.904	INTRON CG13618
X	9763079	X_9763079_SNP [dm3] X_9869046_SNP [dm6]	A	G	3.973e^-4	0.904	UPSTREAM CG45060 INTERGENIC
3R	6659901	3R_6659901_SNP [dm3] 3R_10834179_SNP [dm6]	A	C	3.973e^-4	0.904	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18974289	3L_18974289_SNP [dm3] 3L_18981189_SNP [dm6]	C	A	3.973e^-4	0.904	INTERGENIC
3L	9328509	3L_9328509_SNP [dm3] 3L_9335409_SNP [dm6]	A	G	3.973e^-4	0.904	UPSTREAM PGRP-LA INTRON PGRP-LA
3L	20388392	3L_20388392_SNP [dm3] 3L_20395292_SNP [dm6]	A	G	3.975e^-4	0.904	DOWNSTREAM CR45677 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10730805	2L_10730805_SNP [dm3] 2L_10730805_SNP [dm6]	G	C	3.978e^-4	0.904	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8090555	2R_8090555_DEL [dm3] 2R_12203050_DEL [dm6]	AAAA	A	3.988e^-4	0.904	INTERGENIC
X	9723324	X_9723324_SNP [dm3] X_9829291_SNP [dm6]	T	C	3.991e^-4	0.904	INTRON CG32698
3R	7749706	3R_7749706_SNP [dm3] 3R_11923984_SNP [dm6]	T	A	3.992e^-4	0.904	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi
3L	3762398	3L_3762398_SNP [dm3] 3L_3762398_SNP [dm6]	A	C	3.999e^-4	0.904	INTRON CG32264
2R	7546661	2R_7546661_SNP [dm3] 2R_11659156_SNP [dm6]	T	C	4.004e^-4	0.904	INTRON Roc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9582427	3L_9582427_SNP [dm3] 3L_9589327_SNP [dm6]	T	G	4.005e^-4	0.904	INTRON CG42673
2R	9188899	2R_9188899_SNP [dm3] 2R_13301394_SNP [dm6]	C	T	4.024e^-4	0.904	SYNONYMOUS_CODING CG17047
2R	10106093	2R_10106093_SNP [dm3] 2R_14218588_SNP [dm6]	T	A	4.044e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	13838235	2L_13838235_SNP [dm3] 2L_13838235_SNP [dm6]	C	G	4.045e^-4	0.904	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	17281412	3R_17281412_SNP [dm3] 3R_21455690_SNP [dm6]	C	A	4.048e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6559657	2L_6559657_SNP [dm3] 2L_6559657_SNP [dm6]	T	G	4.057e^-4	0.904	NON_SYNONYMOUS_CODING CG11043 UTR_3_PRIME CG9596 DOWNSTREAM CG9596 & 1 other	TF binding site mE1_TFBS_cad
2R	13340557	2R_13340557_SNP [dm3] 2R_17453052_SNP [dm6]	G	C	4.059e^-4	0.904	UPSTREAM CG10764 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19666938	2R_19666938_SNP [dm3] 2R_23779415_SNP [dm6]	G	T	4.059e^-4	0.904	INTRON CG9850
3L	10630560	3L_10630560_SNP [dm3] 3L_10637460_SNP [dm6]	A	G	4.063e^-4	0.904	SYNONYMOUS_CODING E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8106520	2R_8106520_SNP [dm3] 2R_12219015_SNP [dm6]	G	C	4.065e^-4	0.904	INTERGENIC
2R	12644912	2R_12644912_SNP [dm3] 2R_16757407_SNP [dm6]	A	G	4.065e^-4	0.904	SYNONYMOUS_CODING unc-104
2R	14649710	2R_14649710_SNP [dm3] 2R_18762205_SNP [dm6]	T	C	4.065e^-4	0.904	UTR_5_PRIME Mctp
3R	19658593	3R_19658593_SNP [dm3] 3R_23832871_SNP [dm6]	T	G	4.066e^-4	0.904	INTRON CG34355
2R	8129519	2R_8129519_DEL [dm3] 2R_12242014_DEL [dm6]	TAAT	T	4.074e^-4	0.904	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8132006	2R_8132006_SNP [dm3] 2R_12244501_SNP [dm6]	G	A	4.085e^-4	0.904	SYNONYMOUS_CODING CG43244
2L	7061147	2L_7061147_DEL [dm3] 2L_7061147_DEL [dm6]	ACAGCAA	A	4.090e^-4	0.904	UPSTREAM CG31907
3L	16361976	3L_16361976_SNP [dm3] 3L_16368876_SNP [dm6]	A	T	4.091e^-4	0.904	UPSTREAM CG18814 INTRON CG4842
2R	15327015	2R_15327015_SNP [dm3] 2R_19439510_SNP [dm6]	A	G	4.097e^-4	0.904	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_sens
X	16613120	X_16613120_SNP [dm3] X_16719087_SNP [dm6]	C	T	4.117e^-4	0.904	INTRON CG34325
X	16613138	X_16613138_SNP [dm3] X_16719105_SNP [dm6]	G	A	4.117e^-4	0.904	INTRON CG34325
X	1167972	X_1167972_SNP [dm3] X_1273939_SNP [dm6]	C	T	4.120e^-4	0.904	INTRON Atf3	TF binding site BDTNP1_TFBS_dl
3L	14205309	3L_14205309_SNP [dm3] 3L_14212209_SNP [dm6]	A	G	4.120e^-4	0.904	SYNONYMOUS_CODING nuf UTR_5_PRIME nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2R	8178026	2R_8178026_SNP [dm3] 2R_12290521_SNP [dm6]	T	A	4.131e^-4	0.904	UPSTREAM CG42700 INTRON CG42700
2R	8112615	2R_8112615_SNP [dm3] 2R_12225110_SNP [dm6]	T	C	4.139e^-4	0.904	NON_SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6923942	2R_6923942_SNP [dm3] 2R_11036437_SNP [dm6]	A	T	4.141e^-4	0.904	INTRON luna
2R	8129513	2R_8129513_SNP [dm3] 2R_12242008_SNP [dm6]	T	C	4.142e^-4	0.904	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
X	4345727	X_4345727_SNP [dm3] X_4451694_SNP [dm6]	G	A	4.143e^-4	0.904	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_inv
3R	21333653	3R_21333653_SNP [dm3] 3R_25507931_SNP [dm6]	A	T	4.147e^-4	0.904	NON_SYNONYMOUS_CODING CG5111	TF binding site mE1_TFBS_inv
2R	16386885	2R_16386885_SNP [dm3] 2R_20499380_SNP [dm6]	G	A	4.150e^-4	0.904	INTERGENIC
3R	18982411	3R_18982411_DEL [dm3] 3R_23156689_DEL [dm6]	TAAAACCGCT	T	4.153e^-4	0.904	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	16570210	2L_16570210_SNP [dm3] 2L_16570210_SNP [dm6]	A	G	4.155e^-4	0.904	INTRON CG42389
2R	11735776	2R_11735776_SNP [dm3] 2R_15848271_SNP [dm6]	A	G	4.156e^-4	0.904	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
3L	1328463	3L_1328463_SNP [dm3] 3L_1328463_SNP [dm6]	C	T	4.157e^-4	0.904	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8016647	2R_8016647_SNP [dm3] 2R_12129142_SNP [dm6]	T	C	4.166e^-4	0.904	INTERGENIC
3R	16350261	3R_16350261_SNP [dm3] 3R_20524539_SNP [dm6]	T	G	4.172e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8114125	2R_8114125_SNP [dm3] 2R_12226620_SNP [dm6]	C	A	4.178e^-4	0.904	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
2R	8092306	2R_8092306_SNP [dm3] 2R_12204801_SNP [dm6]	C	T	4.180e^-4	0.904	INTERGENIC
3R	25462676	3R_25462676_SNP [dm3] 3R_29636954_SNP [dm6]	G	A	4.184e^-4	0.904	INTRON Dop1R2
2R	18023678	2R_18023678_SNP [dm3] 2R_22136173_SNP [dm6]	A	G	4.191e^-4	0.904	UPSTREAM a INTERGENIC
2R	8118110	2R_8118110_SNP [dm3] 2R_12230605_SNP [dm6]	C	T	4.196e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19244649	2R_19244649_SNP [dm3] 2R_23357126_SNP [dm6]	G	T	4.203e^-4	0.904	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14677175	2L_14677175_SNP [dm3] 2L_14677175_SNP [dm6]	C	T	4.206e^-4	0.904	INTRON osp
3R	13415359	3R_13415359_SNP [dm3] 3R_17589637_SNP [dm6]	G	A	4.214e^-4	0.904	INTERGENIC
3R	21614490	3R_21614490_SNP [dm3] 3R_25788768_SNP [dm6]	T	G	4.216e^-4	0.904	NON_SYNONYMOUS_CODING CG31380
2R	8102309	2R_8102309_INS [dm3] 2R_12214804_INS [dm6]	G	GAGTG	4.219e^-4	0.904	DOWNSTREAM CG13171 INTERGENIC
X	10212140	X_10212140_SNP [dm3] X_10318107_SNP [dm6]	T	C	4.224e^-4	0.904	INTRON alpha-Man-I
3L	11822642	3L_11822642_SNP [dm3] 3L_11829542_SNP [dm6]	C	A	4.228e^-4	0.904	SYNONYMOUS_CODING CG7264 INTRON CycA
2R	8117948	2R_8117948_SNP [dm3] 2R_12230443_SNP [dm6]	A	T	4.232e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	9314742	2L_9314742_SNP [dm3] 2L_9314742_SNP [dm6]	C	G	4.234e^-4	0.904	INTERGENIC
3L	9732353	3L_9732353_SNP [dm3] 3L_9739253_SNP [dm6]	T	C	4.237e^-4	0.904	SYNONYMOUS_CODING CG42268 UTR_5_PRIME CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7494544	2L_7494544_SNP [dm3] 2L_7494544_SNP [dm6]	A	G	4.240e^-4	0.904	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11637380	3L_11637380_SNP [dm3] 3L_11644280_SNP [dm6]	G	A	4.244e^-4	0.904	SYNONYMOUS_CODING CG6071
2L	11879047	2L_11879047_SNP [dm3] 2L_11879047_SNP [dm6]	T	C	4.250e^-4	0.904	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	18126613	X_18126613_SNP [dm3] X_18232580_SNP [dm6]	G	T	4.264e^-4	0.904	INTERGENIC
2R	8118739	2R_8118739_SNP [dm3] 2R_12231234_SNP [dm6]	A	T	4.266e^-4	0.904	INTERGENIC
3R	21257788	3R_21257788_SNP [dm3] 3R_25432066_SNP [dm6]	A	G	4.268e^-4	0.904	INTRON Fur1
2R	19635782	2R_19635782_SNP [dm3] 2R_23748259_SNP [dm6]	A	T	4.270e^-4	0.904	UTR_3_PRIME CG13560 DOWNSTREAM CG13560
2R	10155305	2R_10155305_SNP [dm3] 2R_14267800_SNP [dm6]	T	A	4.271e^-4	0.904	UTR_5_PRIME CG8547 UPSTREAM CG8547 DOWNSTREAM SelD	TF binding site mE1_TFBS_Trl
2L	7448188	2L_7448188_SNP [dm3] 2L_7448188_SNP [dm6]	G	A	4.278e^-4	0.904	UTR_5_PRIME santa-maria INTRON santa-maria
X	10211199	X_10211199_SNP [dm3] X_10317166_SNP [dm6]	C	T	4.279e^-4	0.904	INTRON alpha-Man-I
3R	7743523	3R_7743523_SNP [dm3] 3R_11917801_SNP [dm6]	G	A	4.283e^-4	0.904	INTRON Cad87A
3L	9418771	3L_9418771_SNP [dm3] 3L_9425671_SNP [dm6]	A	G	4.294e^-4	0.904	DOWNSTREAM aay INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	8108834	2R_8108834_DEL [dm3] 2R_12221329_DEL [dm6]	TTTCTT	T	4.299e^-4	0.904	INTERGENIC
X	1162156	X_1162156_SNP [dm3] X_1268123_SNP [dm6]	T	C	4.303e^-4	0.904	INTRON Atf3
2L	7494560	2L_7494560_SNP [dm3] 2L_7494560_SNP [dm6]	C	A	4.304e^-4	0.904	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12722162	3L_12722162_SNP [dm3] 3L_12729062_SNP [dm6]	T	C	4.305e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7406943	2R_7406943_SNP [dm3] 2R_11519438_SNP [dm6]	T	C	4.318e^-4	0.904	INTERGENIC
2R	18203566	2R_18203566_SNP [dm3] 2R_22316061_SNP [dm6]	C	G	4.322e^-4	0.904	INTRON CR44758
3R	14818780	3R_14818780_SNP [dm3] 3R_18993058_SNP [dm6]	A	G	4.325e^-4	0.904	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	15518927	3L_15518927_INS [dm3] 3L_15525827_INS [dm6]	A	ACATGTGACACTTATTGTAA...	4.328e^-4	0.904	UPSTREAM CG33986 DOWNSTREAM CG33985 INTERGENIC
3R	18983826	3R_18983826_SNP [dm3] 3R_23158104_SNP [dm6]	G	A	4.343e^-4	0.904	UTR_3_PRIME VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	10679888	2L_10679888_SNP [dm3] 2L_10679888_SNP [dm6]	T	A	4.345e^-4	0.904	DOWNSTREAM CR44180 & 1 other INTERGENIC
3R	19317734	3R_19317734_DEL [dm3] 3R_23492012_DEL [dm6]	AA	A	4.363e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7073588	2R_7073588_SNP [dm3] 2R_11186083_SNP [dm6]	C	T	4.373e^-4	0.904	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	7699402	2L_7699402_SNP [dm3] 2L_7699402_SNP [dm6]	C	T	4.378e^-4	0.904	SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
X	7139293	X_7139293_SNP [dm3] X_7245260_SNP [dm6]	C	T	4.382e^-4	0.904	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
2R	8132004	2R_8132004_SNP [dm3] 2R_12244499_SNP [dm6]	T	C	4.383e^-4	0.904	NON_SYNONYMOUS_CODING CG43244
2L	5028585	2L_5028585_SNP [dm3] 2L_5028585_SNP [dm6]	G	T	4.385e^-4	0.904	UPSTREAM vkg INTERGENIC	regulatory region REDfly_CRMs
3R	6622243	3R_6622243_SNP [dm3] 3R_10796521_SNP [dm6]	G	T	4.394e^-4	0.904	NON_SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_sens
2R	8178048	2R_8178048_SNP [dm3] 2R_12290543_SNP [dm6]	G	A	4.400e^-4	0.904	UPSTREAM CG42700 INTRON CG42700
3R	21614548	3R_21614548_SNP [dm3] 3R_25788826_SNP [dm6]	G	A	4.406e^-4	0.904	SYNONYMOUS_CODING CG31380 DOWNSTREAM CG31093	TF binding site mE1_TFBS_sens
2L	13565890	2L_13565890_SNP [dm3] 2L_13565890_SNP [dm6]	A	G	4.407e^-4	0.904	INTRON kuz
3R	8439929	3R_8439929_SNP [dm3] 3R_12614207_SNP [dm6]	C	T	4.419e^-4	0.904	INTERGENIC
2L	10784019	2L_10784019_SNP [dm3] 2L_10784019_SNP [dm6]	C	A	4.425e^-4	0.904	INTRON CG31869
3R	7797822	3R_7797822_SNP [dm3] 3R_11972100_SNP [dm6]	C	T	4.428e^-4	0.904	SPLICE_SITE_REGION GC2 SYNONYMOUS_CODING GC2 UTR_5_PRIME GC2 DOWNSTREAM GC1 & 1 other
3L	5630286	3L_5630286_SNP [dm3] 3L_5637186_SNP [dm6]	C	T	4.438e^-4	0.904	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8602750	3L_8602750_SNP [dm3] 3L_8609650_SNP [dm6]	G	A	4.441e^-4	0.904	INTRON CG6282	TF binding site mE1_TFBS_cad
2L	7058141	2L_7058141_SNP [dm3] 2L_7058141_SNP [dm6]	G	A	4.447e^-4	0.904	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	13667542	2L_13667542_SNP [dm3] 2L_13667542_SNP [dm6]	C	T	4.450e^-4	0.904	INTRON CG18507
X	10211625	X_10211625_SNP [dm3] X_10317592_SNP [dm6]	A	T	4.457e^-4	0.904	INTRON alpha-Man-I
2L	21886389	2L_21886389_SNP [dm3] 2L_21886389_SNP [dm6]	G	A	4.461e^-4	0.904	INTERGENIC
2R	12162191	2R_12162191_SNP [dm3] 2R_16274686_SNP [dm6]	G	C	4.465e^-4	0.904	NON_SYNONYMOUS_CODING CG33017
X	6271592	X_6271592_SNP [dm3] X_6377559_SNP [dm6]	A	G	4.466e^-4	0.904	INTERGENIC
2R	8148270	2R_8148270_SNP [dm3] 2R_12260765_SNP [dm6]	A	G	4.467e^-4	0.904	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	8095598	2R_8095598_SNP [dm3] 2R_12208093_SNP [dm6]	T	G	4.472e^-4	0.904	DOWNSTREAM CR45276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5633748	3L_5633748_SNP [dm3] 3L_5640648_SNP [dm6]	C	T	4.476e^-4	0.904	INTRON Blimp-1
3R	22829384	3R_22829384_SNP [dm3] 3R_27003662_SNP [dm6]	C	A	4.489e^-4	0.904	NON_SYNONYMOUS_CODING CG6296 DOWNSTREAM CG31077 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2534844	3L_2534844_SNP [dm3] 3L_2534844_SNP [dm6]	G	A	4.493e^-4	0.904	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7762633	3R_7762633_SNP [dm3] 3R_11936911_SNP [dm6]	A	T	4.514e^-4	0.904	INTRON Cad87A
3R	25653924	3R_25653924_SNP [dm3] 3R_29828202_SNP [dm6]	G	A	4.521e^-4	0.904	INTRON Atg16
3R	25653930	3R_25653930_SNP [dm3] 3R_29828208_SNP [dm6]	C	T	4.521e^-4	0.904	INTRON Atg16
2L	790076	2L_790076_SNP [dm3] 2L_790076_SNP [dm6]	A	G	4.522e^-4	0.904	INTRON Pkg21D	TF binding site mE1_TFBS_cad
3L	9496267	3L_9496267_SNP [dm3] 3L_9503167_SNP [dm6]	G	T	4.526e^-4	0.904	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12569151	3R_12569151_SNP [dm3] 3R_16743429_SNP [dm6]	A	G	4.529e^-4	0.904	DOWNSTREAM bxd INTRON bxd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	13596624	3L_13596624_SNP [dm3] 3L_13603524_SNP [dm6]	A	G	4.540e^-4	0.904	INTRON bru-3
3R	20703442	3R_20703442_SNP [dm3] 3R_24877720_SNP [dm6]	C	A	4.551e^-4	0.904	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1281832	3L_1281832_SNP [dm3] 3L_1281832_SNP [dm6]	C	T	4.554e^-4	0.904	INTRON CG32333
2R	8101945	2R_8101945_SNP [dm3] 2R_12214440_SNP [dm6]	G	T	4.564e^-4	0.904	DOWNSTREAM CG13171 INTERGENIC
2R	8109756	2R_8109756_SNP [dm3] 2R_12222251_SNP [dm6]	A	G	4.568e^-4	0.904	INTERGENIC
2R	18548443	2R_18548443_SNP [dm3] 2R_22660938_SNP [dm6]	A	C	4.571e^-4	0.904	UPSTREAM CG42566 DOWNSTREAM CG13511 INTRON CG42565 & 2 others	TF binding site mE1_TFBS_cad
X	16795237	X_16795237_SNP [dm3] X_16901204_SNP [dm6]	T	A	4.574e^-4	0.904	DOWNSTREAM CR44754 INTERGENIC
2R	7406959	2R_7406959_SNP [dm3] 2R_11519454_SNP [dm6]	G	A	4.578e^-4	0.904	INTERGENIC
2R	7539129	2R_7539129_SNP [dm3] 2R_11651624_SNP [dm6]	G	A	4.583e^-4	0.904	UPSTREAM CG34228 & 1 other DOWNSTREAM tRNA:CR30254 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	12249062	2L_12249062_SNP [dm3] 2L_12249062_SNP [dm6]	C	T	4.586e^-4	0.904	INTRON aret
2L	5448868	2L_5448868_SNP [dm3] 2L_5448868_SNP [dm6]	G	T	4.587e^-4	0.904	INTERGENIC
3R	23498538	3R_23498538_SNP [dm3] 3R_27672816_SNP [dm6]	G	A	4.588e^-4	0.904	INTRON unc80	TF binding site mE1_TFBS_chinmo
3R	15074753	3R_15074753_SNP [dm3] 3R_19249031_SNP [dm6]	A	C	4.606e^-4	0.904	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
X	10209731	X_10209731_SNP [dm3] X_10315698_SNP [dm6]	C	T	4.607e^-4	0.904	INTRON alpha-Man-I
2R	8100594	2R_8100594_SNP [dm3] 2R_12213089_SNP [dm6]	G	A	4.608e^-4	0.904	UPSTREAM Sr-CII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	5874709	3L_5874709_SNP [dm3] 3L_5881609_SNP [dm6]	G	A	4.631e^-4	0.904	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	21257908	3R_21257908_SNP [dm3] 3R_25432186_SNP [dm6]	T	G	4.641e^-4	0.904	INTRON Fur1
2R	10170106	2R_10170106_SNP [dm3] 2R_14282601_SNP [dm6]	T	C	4.645e^-4	0.904	INTRON Ih
X	11744932	X_11744932_SNP [dm3] X_11850899_SNP [dm6]	T	G	4.652e^-4	0.904	UPSTREAM CR45619 DOWNSTREAM p24-1 INTERGENIC	TF binding site mE1_TFBS_ttk
3L	20359189	3L_20359189_SNP [dm3] 3L_20366089_SNP [dm6]	G	A	4.666e^-4	0.904	UPSTREAM Toll-9 INTRON Toll-9	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	5696227	3R_5696227_SNP [dm3] 3R_9870505_SNP [dm6]	C	G	4.671e^-4	0.904	INTERGENIC
2L	12403932	2L_12403932_SNP [dm3] 2L_12403932_SNP [dm6]	A	G	4.674e^-4	0.904	SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12154212	2R_12154212_SNP [dm3] 2R_16266707_SNP [dm6]	T	C	4.674e^-4	0.904	DOWNSTREAM Khc INTRON csul
2L	11209417	2L_11209417_SNP [dm3] 2L_11209417_SNP [dm6]	C	T	4.682e^-4	0.904	INTERGENIC	silencer mE1_HDAC_PRE
3R	8389964	3R_8389964_SNP [dm3] 3R_12564242_SNP [dm6]	A	G	4.698e^-4	0.904	INTRON Octbeta2R	TF binding site mE1_TFBS_run
X	6484017	X_6484017_SNP [dm3] X_6589984_SNP [dm6]	T	C	4.698e^-4	0.904	UPSTREAM Pat1 DOWNSTREAM CG34417 INTRON CG17717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	262825	2L_262825_SNP [dm3] 2L_262825_SNP [dm6]	C	A	4.708e^-4	0.904	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 INTRON CG3645 EXON CR44219
3L	8722534	3L_8722534_SNP [dm3] 3L_8729434_SNP [dm6]	A	T	4.713e^-4	0.904	UPSTREAM Cp19 DOWNSTREAM Cp15 INTERGENIC
2R	12636448	2R_12636448_SNP [dm3] 2R_16748943_SNP [dm6]	T	C	4.717e^-4	0.904	UTR_3_PRIME Acp53C14b UPSTREAM Acp53C14a DOWNSTREAM Acp53Ea
2R	12896700	2R_12896700_SNP [dm3] 2R_17009195_SNP [dm6]	G	T	4.720e^-4	0.904	INTRON Ehbp1
2R	9498065	2R_9498065_SNP [dm3] 2R_13610560_SNP [dm6]	T	C	4.722e^-4	0.904	INTERGENIC
3R	5306425	3R_5306425_SNP [dm3] 3R_9480703_SNP [dm6]	G	C	4.725e^-4	0.904	INTRON CG16779	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12163329	2R_12163329_SNP [dm3] 2R_16275824_SNP [dm6]	C	A	4.726e^-4	0.904	SYNONYMOUS_CODING CG33017
3R	2165538	3R_2165538_SNP [dm3] 3R_6339816_SNP [dm6]	C	A	4.727e^-4	0.904	UPSTREAM Osi20 INTERGENIC	TF binding site mE1_TFBS_cad
3R	8512857	3R_8512857_SNP [dm3] 3R_12687135_SNP [dm6]	T	C	4.728e^-4	0.904	INTRON kar	TF binding site mE1_TFBS_cad
3R	21614486	3R_21614486_SNP [dm3] 3R_25788764_SNP [dm6]	T	G	4.734e^-4	0.904	NON_SYNONYMOUS_CODING CG31380
X	10210232	X_10210232_SNP [dm3] X_10316199_SNP [dm6]	G	T	4.735e^-4	0.904	INTRON alpha-Man-I
2L	1238487	2L_1238487_SNP [dm3] 2L_1238487_SNP [dm6]	T	G	4.765e^-4	0.904	INTERGENIC
2R	16691766	2R_16691766_SNP [dm3] 2R_20804261_SNP [dm6]	A	G	4.766e^-4	0.904	INTERGENIC
2L	11287045	2L_11287045_SNP [dm3] 2L_11287045_SNP [dm6]	T	C	4.766e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9511560	3L_9511560_SNP [dm3] 3L_9518460_SNP [dm6]	A	G	4.768e^-4	0.904	INTRON CG33700
3R	12568434	3R_12568434_SNP [dm3] 3R_16742712_SNP [dm6]	T	A	4.782e^-4	0.904	EXON bxd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	12866198	2R_12866198_SNP [dm3] 2R_16978693_SNP [dm6]	T	C	4.787e^-4	0.904	INTRON Cbp53E
2R	14373325	2R_14373325_SNP [dm3] 2R_18485820_SNP [dm6]	A	G	4.788e^-4	0.904	INTRON CG30116
3R	21404658	3R_21404658_SNP [dm3] 3R_25578936_SNP [dm6]	G	A	4.794e^-4	0.904	INTRON msi	TF binding site BDTNP1_TFBS_slp1
2R	8091164	2R_8091164_SNP [dm3] 2R_12203659_SNP [dm6]	G	A	4.803e^-4	0.904	INTERGENIC
3R	26450399	3R_26450399_SNP [dm3] 3R_30624677_SNP [dm6]	A	G	4.818e^-4	0.904	DOWNSTREAM CR44136 INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	9984951	3L_9984951_SNP [dm3] 3L_9991851_SNP [dm6]	A	C	4.831e^-4	0.904	INTRON dpr6
2R	18548419	2R_18548419_SNP [dm3] 2R_22660914_SNP [dm6]	C	A	4.832e^-4	0.904	DOWNSTREAM CG13511 INTRON CG42565 & 2 others	TF binding site mE1_TFBS_cad
2R	18548442	2R_18548442_SNP [dm3] 2R_22660937_SNP [dm6]	G	A	4.832e^-4	0.904	UPSTREAM CG42566 DOWNSTREAM CG13511 INTRON CG42565 & 2 others	TF binding site mE1_TFBS_cad
2R	8120340	2R_8120340_SNP [dm3] 2R_12232835_SNP [dm6]	G	A	4.849e^-4	0.904	INTERGENIC
2R	8117984	2R_8117984_SNP [dm3] 2R_12230479_SNP [dm6]	A	C	4.853e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	12204208	2L_12204208_SNP [dm3] 2L_12204208_SNP [dm6]	G	A	4.863e^-4	0.904	INTRON aret
X	10209851	X_10209851_SNP [dm3] X_10315818_SNP [dm6]	C	A	4.864e^-4	0.904	INTRON alpha-Man-I
X	5922253	X_5922253_SNP [dm3] X_6028220_SNP [dm6]	T	C	4.864e^-4	0.904	INTERGENIC
2R	1318638	2R_1318638_SNP [dm3] 2R_5431133_SNP [dm6]	A	T	4.871e^-4	0.904	INTRON laccase2	transposable element FlyBase
X	7143420	X_7143420_INS [dm3] X_7249387_INS [dm6]	T	TAATATATA	4.874e^-4	0.904	INTRON CR44357
3L	10644032	3L_10644032_SNP [dm3] 3L_10650932_SNP [dm6]	T	A	4.879e^-4	0.904	INTRON CG32066
2L	15170653	2L_15170653_SNP [dm3] 2L_15170653_SNP [dm6]	C	T	4.879e^-4	0.904	INTRON CG4168
3L	10727232	3L_10727232_SNP [dm3] 3L_10734132_SNP [dm6]	G	T	4.890e^-4	0.904	INTERGENIC
X	3422598	X_3422598_SNP [dm3] X_3528565_SNP [dm6]	T	A	4.895e^-4	0.904	INTRON CG32791
3R	15799549	3R_15799549_SNP [dm3] 3R_19973827_SNP [dm6]	T	A	4.895e^-4	0.904	NON_SYNONYMOUS_CODING CG31213 INTRON Hs6st
2R	6915014	2R_6915014_SNP [dm3] 2R_11027509_SNP [dm6]	C	A	4.906e^-4	0.904	INTRON luna
X	5880630	X_5880630_SNP [dm3] X_5986597_SNP [dm6]	T	A	4.907e^-4	0.904	UTR_3_PRIME Grip
3R	17279091	3R_17279091_SNP [dm3] 3R_21453369_SNP [dm6]	C	A	4.918e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	4217529	2R_4217529_SNP [dm3] 2R_8330024_SNP [dm6]	G	A	4.920e^-4	0.904	INTRON pdm3
2R	8105936	2R_8105936_SNP [dm3] 2R_12218431_SNP [dm6]	T	A	4.923e^-4	0.904	INTERGENIC
2R	19666250	2R_19666250_SNP [dm3] 2R_23778727_SNP [dm6]	T	C	4.927e^-4	0.904	INTRON CG9850
3L	12186775	3L_12186775_SNP [dm3] 3L_12193675_SNP [dm6]	T	C	4.930e^-4	0.904	UTR_5_PRIME thoc6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
3R	7747933	3R_7747933_SNP [dm3] 3R_11922211_SNP [dm6]	A	G	4.935e^-4	0.904	INTRON Cad87A
3R	21677159	3R_21677159_INS [dm3] 3R_25851437_INS [dm6]	T	TA	4.942e^-4	0.904	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	2293453	2L_2293453_SNP [dm3] 2L_2293453_SNP [dm6]	A	G	4.942e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14677161	2L_14677161_SNP [dm3] 2L_14677161_SNP [dm6]	A	G	4.943e^-4	0.904	INTRON osp
3L	6630622	3L_6630622_SNP [dm3] 3L_6637522_SNP [dm6]	T	A	4.943e^-4	0.904	INTERGENIC
3R	7729799	3R_7729799_SNP [dm3] 3R_11904077_SNP [dm6]	C	T	4.944e^-4	0.904	INTRON Cad87A
2R	8116285	2R_8116285_DEL [dm3] 2R_12228780_DEL [dm6]	GT	G	4.945e^-4	0.904	INTRON CG8854
2L	655885	2L_655885_SNP [dm3] 2L_655885_SNP [dm6]	G	T	4.954e^-4	0.904	INTRON ds
2R	19395283	2R_19395283_SNP [dm3] 2R_23507760_SNP [dm6]	G	C	4.955e^-4	0.904	EXON CR43794
2L	4091240	2L_4091240_SNP [dm3] 2L_4091240_SNP [dm6]	T	C	4.956e^-4	0.904	INTRON ed
X	14087941	X_14087941_SNP [dm3] X_14193908_SNP [dm6]	G	C	4.976e^-4	0.904	INTRON yl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
3L	6354743	3L_6354743_SNP [dm3] 3L_6361643_SNP [dm6]	G	A	4.981e^-4	0.904	INTERGENIC
2R	12562709	2R_12562709_SNP [dm3] 2R_16675204_SNP [dm6]	G	C	4.999e^-4	0.904	SYNONYMOUS_CODING CG30463
2R	1318637	2R_1318637_SNP [dm3] 2R_5431132_SNP [dm6]	C	T	5.018e^-4	0.904	INTRON laccase2	transposable element FlyBase
2R	8101476	2R_8101476_DEL [dm3] 2R_12213971_DEL [dm6]	CAGTAAGTC	C	5.025e^-4	0.904	UPSTREAM CG13171 INTERGENIC	TF binding site mE1_TFBS_HSA
X	18927775	X_18927775_SNP [dm3] X_19033742_SNP [dm6]	T	A	5.026e^-4	0.904	INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

Cuticul_5_9_C29_1_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results