DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.847e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.0002743

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.098	0.0782

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1907 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	1.060e^-6	0.721	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	313440	2L_313440_SNP [dm3] 2L_313440_SNP [dm6]	A	G	1.290e^-6	0.721	INTRON Plc21C
3L	6395533	3L_6395533_SNP [dm3] 3L_6402433_SNP [dm6]	G	A	1.459e^-6	0.721	INTRON CG42747
2L	13726505	2L_13726505_SNP [dm3] 2L_13726505_SNP [dm6]	G	T	2.385e^-6	0.721	INTERGENIC
2L	13726506	2L_13726506_SNP [dm3] 2L_13726506_SNP [dm6]	G	T	2.907e^-6	0.721	INTERGENIC
3L	9137472	3L_9137472_SNP [dm3] 3L_9144372_SNP [dm6]	A	G	3.074e^-6	0.721	UTR_3_PRIME nwk UPSTREAM mir-4940 INTRON nwk	TF binding site mE1_TFBS_cad
2L	8504960	2L_8504960_SNP [dm3] 2L_8504960_SNP [dm6]	G	A	3.263e^-6	0.721	INTRON Dh31
2L	8504943	2L_8504943_SNP [dm3] 2L_8504943_SNP [dm6]	T	C	3.330e^-6	0.721	INTRON Dh31
3L	6396124	3L_6396124_SNP [dm3] 3L_6403024_SNP [dm6]	A	G	4.330e^-6	0.721	INTRON CG42747
2L	4422778	2L_4422778_SNP [dm3] 2L_4422778_SNP [dm6]	A	G	4.422e^-6	0.721	INTRON CG15431
2L	10530516	2L_10530516_SNP [dm3] 2L_10530516_SNP [dm6]	T	C	4.506e^-6	0.721	SYNONYMOUS_CODING Lip4
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	5.584e^-6	0.721	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	313403	2L_313403_SNP [dm3] 2L_313403_SNP [dm6]	A	T	5.679e^-6	0.721	INTRON Plc21C
3R	16647621	3R_16647621_SNP [dm3] 3R_20821899_SNP [dm6]	C	A	5.687e^-6	0.721	UPSTREAM RpS20 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	23848442	3R_23848442_INS [dm3] 3R_28022720_INS [dm6]	A	AA	5.767e^-6	0.721	INTERGENIC
3R	14140329	3R_14140329_SNP [dm3] 3R_18314607_SNP [dm6]	G	C	6.863e^-6	0.761	UPSTREAM PKD INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	15957612	3L_15957612_SNP [dm3] 3L_15964512_SNP [dm6]	G	T	7.084e^-6	0.761	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8504959	2L_8504959_SNP [dm3] 2L_8504959_SNP [dm6]	T	C	8.416e^-6	0.761	INTRON Dh31
2L	313446	2L_313446_SNP [dm3] 2L_313446_SNP [dm6]	A	G	8.644e^-6	0.761	INTRON Plc21C
3L	12561460	3L_12561460_SNP [dm3] 3L_12568360_SNP [dm6]	C	A	8.676e^-6	0.761	INTRON sowah
2R	18605375	2R_18605375_SNP [dm3] 2R_22717870_SNP [dm6]	T	C	9.069e^-6	0.761	SPLICE_SITE_REGION jbug DOWNSTREAM CG30268 INTRON jbug	TF binding site mE1_TFBS_chinmo
3L	9161604	3L_9161604_SNP [dm3] 3L_9168504_SNP [dm6]	T	G	9.292e^-6	0.761	INTRON Rdl
X	10933155	X_10933155_SNP [dm3] X_11039122_SNP [dm6]	G	C	9.555e^-6	0.761	INTRON CG42339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	18608372	2R_18608372_SNP [dm3] 2R_22720867_SNP [dm6]	G	A	1.032e^-5	0.761	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8504536	2L_8504536_SNP [dm3] 2L_8504536_SNP [dm6]	A	G	1.038e^-5	0.761	INTRON Dh31
3L	5460183	3L_5460183_SNP [dm3] 3L_5467083_SNP [dm6]	G	A	1.055e^-5	0.761	INTERGENIC
2L	15052450	2L_15052450_SNP [dm3] 2L_15052450_SNP [dm6]	T	C	1.133e^-5	0.787	INTRON ck	regulatory region REDfly_CRMs
2L	10345596	2L_10345596_SNP [dm3] 2L_10345596_SNP [dm6]	T	C	1.174e^-5	0.787	INTRON CG5022
2R	18708363	2R_18708363_DEL [dm3] 2R_22820858_DEL [dm6]	TT	T	1.281e^-5	0.809	UPSTREAM CG42284 INTRON CG30271	TF binding site mE1_TFBS_chinmo
2R	18606286	2R_18606286_SNP [dm3] 2R_22718781_SNP [dm6]	C	T	1.321e^-5	0.809	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23884594	3R_23884594_SNP [dm3] 3R_28058872_SNP [dm6]	G	A	1.474e^-5	0.809	INTRON CG34362
3R	25477837	3R_25477837_SNP [dm3] 3R_29652115_SNP [dm6]	A	G	1.502e^-5	0.809	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6396334	3L_6396334_SNP [dm3] 3L_6403234_SNP [dm6]	G	C	1.512e^-5	0.809	INTRON CG42747
2L	8504615	2L_8504615_SNP [dm3] 2L_8504615_SNP [dm6]	C	T	1.541e^-5	0.809	INTRON Dh31
3L	6396416	3L_6396416_SNP [dm3] 3L_6403316_SNP [dm6]	G	A	1.592e^-5	0.809	INTRON CG42747
2L	8504057	2L_8504057_SNP [dm3] 2L_8504057_SNP [dm6]	G	A	1.616e^-5	0.809	INTRON Dh31
2R	1081533	2R_1081533_DEL [dm3] 2R_5194028_DEL [dm6]	GT	G	1.706e^-5	0.809	INTRON Nipped-A	transposable element FlyBase
X	5020636	X_5020636_SNP [dm3] X_5126603_SNP [dm6]	A	T	1.721e^-5	0.809	INTRON rg & 1 other
2L	1531313	2L_1531313_SNP [dm3] 2L_1531313_SNP [dm6]	G	A	1.726e^-5	0.809	INTERGENIC
2L	5417859	2L_5417859_SNP [dm3] 2L_5417859_SNP [dm6]	T	A	1.741e^-5	0.809	INTERGENIC
3L	6396128	3L_6396128_SNP [dm3] 3L_6403028_SNP [dm6]	G	A	1.768e^-5	0.809	INTRON CG42747
2R	18369048	2R_18369048_SNP [dm3] 2R_22481543_SNP [dm6]	G	A	2.017e^-5	0.874	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16647645	3R_16647645_SNP [dm3] 3R_20821923_SNP [dm6]	C	A	2.042e^-5	0.874	UPSTREAM RpS20 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	313387	2L_313387_SNP [dm3] 2L_313387_SNP [dm6]	G	A	2.106e^-5	0.874	INTRON Plc21C
3L	15957664	3L_15957664_SNP [dm3] 3L_15964564_SNP [dm6]	A	G	2.124e^-5	0.874	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4896797	2L_4896797_SNP [dm3] 2L_4896797_SNP [dm6]	A	T	2.144e^-5	0.874	INTRON CG3036
X	13959259	X_13959259_SNP [dm3] X_14065226_SNP [dm6]	C	A	2.302e^-5	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16647464	3R_16647464_SNP [dm3] 3R_20821742_SNP [dm6]	C	A	2.466e^-5	0.927	UTR_5_PRIME CG17271 UPSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	19804224	3R_19804224_SNP [dm3] 3R_23978502_SNP [dm6]	A	G	2.496e^-5	0.927	INTRON CG31140
2L	5964672	2L_5964672_SNP [dm3] 2L_5964672_SNP [dm6]	G	A	2.608e^-5	0.927	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd
3L	10808001	3L_10808001_DEL [dm3] 3L_10814901_DEL [dm6]	GCG	G	2.650e^-5	0.927	UTR_5_PRIME CG42831
2L	4896786	2L_4896786_SNP [dm3] 2L_4896786_SNP [dm6]	C	T	2.698e^-5	0.927	INTRON CG3036
2R	9512213	2R_9512213_SNP [dm3] 2R_13624708_SNP [dm6]	T	G	2.702e^-5	0.927	INTRON fas
3R	19804234	3R_19804234_SNP [dm3] 3R_23978512_SNP [dm6]	A	T	2.779e^-5	0.927	INTRON CG31140
3L	6396662	3L_6396662_SNP [dm3] 3L_6403562_SNP [dm6]	A	G	2.888e^-5	0.927	INTRON CG42747
3L	9053529	3L_9053529_SNP [dm3] 3L_9060429_SNP [dm6]	C	G	3.018e^-5	0.927	INTRON Argk
2R	7379875	2R_7379875_SNP [dm3] 2R_11492370_SNP [dm6]	A	G	3.058e^-5	0.927	INTRON inv
3L	15943155	3L_15943155_DEL [dm3] 3L_15950055_DEL [dm6]	AGCCA	A	3.142e^-5	0.927	INTRON Pka-C3
3R	16650170	3R_16650170_SNP [dm3] 3R_20824448_SNP [dm6]	T	A	3.179e^-5	0.927	UPSTREAM CG17272 DOWNSTREAM AdSS INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	17829310	3L_17829310_DEL [dm3] 3L_17836210_DEL [dm6]	TTTTCCGCATGCTAAAATCG...	T	3.183e^-5	0.927	INTRON Grd
3L	17829337	3L_17829337_SNP [dm3] 3L_17836237_SNP [dm6]	T	A	3.183e^-5	0.927	INTRON Grd
3R	26616008	3R_26616008_SNP [dm3] 3R_30790286_SNP [dm6]	G	A	3.214e^-5	0.927	UTR_3_PRIME wts
3L	7611528	3L_7611528_SNP [dm3] 3L_7618428_SNP [dm6]	T	C	3.285e^-5	0.927	INTRON CG33275
3L	7604878	3L_7604878_DEL [dm3] 3L_7611778_DEL [dm6]	ACGTTGA	A	3.339e^-5	0.927	INTRON CG33275
3R	19261520	3R_19261520_SNP [dm3] 3R_23435798_SNP [dm6]	A	T	3.362e^-5	0.927	INTRON CG4374
3R	2457129	3R_2457129_SNP [dm3] 3R_6631407_SNP [dm6]	A	C	3.471e^-5	0.927	DOWNSTREAM sunz INTERGENIC
3R	15309937	3R_15309937_SNP [dm3] 3R_19484215_SNP [dm6]	A	G	3.489e^-5	0.927	SYNONYMOUS_CODING Dys INTRON Dys
2L	4039632	2L_4039632_SNP [dm3] 2L_4039632_SNP [dm6]	T	G	3.521e^-5	0.927	INTRON ed
3R	16649476	3R_16649476_SNP [dm3] 3R_20823754_SNP [dm6]	T	C	3.552e^-5	0.927	DOWNSTREAM snoRNA:Psi28S-2562 & 2 others INTRON CG17272	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
X	14855617	X_14855617_SNP [dm3] X_14961584_SNP [dm6]	A	G	3.569e^-5	0.927	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
3R	23886018	3R_23886018_SNP [dm3] 3R_28060296_SNP [dm6]	C	T	3.606e^-5	0.927	INTRON CG34362
2L	7102505	2L_7102505_SNP [dm3] 2L_7102505_SNP [dm6]	G	C	3.643e^-5	0.927	INTRON Pvf3
3L	17819926	3L_17819926_SNP [dm3] 3L_17826826_SNP [dm6]	A	G	3.746e^-5	0.927	INTRON Grd
3L	12155380	3L_12155380_SNP [dm3] 3L_12162280_SNP [dm6]	T	C	3.774e^-5	0.927	INTRON CG9760
X	12292555	X_12292555_SNP [dm3] X_12398522_SNP [dm6]	T	A	4.086e^-5	0.927	INTERGENIC
2L	8512075	2L_8512075_SNP [dm3] 2L_8512075_SNP [dm6]	A	T	4.089e^-5	0.927	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	7463093	2L_7463093_INS [dm3] 2L_7463093_INS [dm6]	A	AA	4.116e^-5	0.927	UPSTREAM Gr28b INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13516036	2R_13516036_INS [dm3] 2R_17628531_INS [dm6]	A	AGTA	4.166e^-5	0.927	UTR_3_PRIME rhi INTRON CG10936
3L	15944366	3L_15944366_SNP [dm3] 3L_15951266_SNP [dm6]	A	G	4.269e^-5	0.927	INTRON Pka-C3
2L	21725821	2L_21725821_SNP [dm3] 2L_21725821_SNP [dm6]	A	C	4.292e^-5	0.927	INTRON CG31619	transposable element FlyBase
2R	17111583	2R_17111583_SNP [dm3] 2R_21224078_SNP [dm6]	A	G	4.318e^-5	0.927	UPSTREAM ASPP INTRON ASPP
2R	8937312	2R_8937312_SNP [dm3] 2R_13049807_SNP [dm6]	G	A	4.375e^-5	0.927	UPSTREAM CG13324 INTERGENIC
3R	15907840	3R_15907840_SNP [dm3] 3R_20082118_SNP [dm6]	G	A	4.398e^-5	0.927	SYNONYMOUS_CODING Rh3	TF binding site mE1_TFBS_cad
3R	22765778	3R_22765778_SNP [dm3] 3R_26940056_SNP [dm6]	G	A	4.410e^-5	0.927	INTRON sda
2R	12887593	2R_12887593_SNP [dm3] 2R_17000088_SNP [dm6]	A	G	4.439e^-5	0.927	SYNONYMOUS_CODING ste24b DOWNSTREAM ste24a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4422757	2L_4422757_SNP [dm3] 2L_4422757_SNP [dm6]	T	C	4.453e^-5	0.927	INTRON CG15431
3R	25367813	3R_25367813_SNP [dm3] 3R_29542091_SNP [dm6]	T	A	4.560e^-5	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16647366	3R_16647366_SNP [dm3] 3R_20821644_SNP [dm6]	G	A	4.608e^-5	0.927	NON_SYNONYMOUS_CODING CG17271 UPSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	9513723	2R_9513723_SNP [dm3] 2R_13626218_SNP [dm6]	G	A	4.747e^-5	0.927	INTRON fas
X	5020620	X_5020620_SNP [dm3] X_5126587_SNP [dm6]	G	T	4.861e^-5	0.927	INTRON rg & 1 other
3L	19024253	3L_19024253_SNP [dm3] 3L_19031153_SNP [dm6]	T	A	4.918e^-5	0.927	INTRON nkd	TF binding site BDTNP1_TFBS_dl
3L	6395626	3L_6395626_SNP [dm3] 3L_6402526_SNP [dm6]	A	T	4.928e^-5	0.927	INTRON CG42747
X	2277460	X_2277460_DEL [dm3] X_2383427_DEL [dm6]	AA	A	5.007e^-5	0.927	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23886156	3R_23886156_INS [dm3] 3R_28060434_INS [dm6]	T	TAT	5.012e^-5	0.927	INTRON CG34362
2R	9513697	2R_9513697_SNP [dm3] 2R_13626192_SNP [dm6]	G	A	5.093e^-5	0.927	INTRON fas
2L	3210619	2L_3210619_SNP [dm3] 2L_3210619_SNP [dm6]	A	T	5.132e^-5	0.927	EXON CR45336
3L	23439912	3L_23439912_SNP [dm3] 3L_23446812_SNP [dm6]	T	A	5.166e^-5	0.927	INTERGENIC
2R	16376228	2R_16376228_SNP [dm3] 2R_20488723_SNP [dm6]	T	C	5.236e^-5	0.927	INTERGENIC
3L	18545733	3L_18545733_SNP [dm3] 3L_18552633_SNP [dm6]	A	G	5.346e^-5	0.927	INTERGENIC
2L	554099	2L_554099_SNP [dm3] 2L_554099_SNP [dm6]	C	T	5.380e^-5	0.927	SYNONYMOUS_CODING rempA
3R	25775575	3R_25775575_SNP [dm3] 3R_29949853_SNP [dm6]	C	A	5.384e^-5	0.927	DOWNSTREAM TkR99D INTERGENIC
3L	6396433	3L_6396433_SNP [dm3] 3L_6403333_SNP [dm6]	C	T	5.480e^-5	0.927	INTRON CG42747
2R	15930251	2R_15930251_SNP [dm3] 2R_20042746_SNP [dm6]	C	T	5.487e^-5	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	6395564	3L_6395564_SNP [dm3] 3L_6402464_SNP [dm6]	G	A	5.540e^-5	0.927	INTRON CG42747
3L	7599835	3L_7599835_SNP [dm3] 3L_7606735_SNP [dm6]	G	T	5.749e^-5	0.927	INTRON CG33275
3L	8055959	3L_8055959_SNP [dm3] 3L_8062859_SNP [dm6]	G	C	5.846e^-5	0.927	INTERGENIC
3L	13165349	3L_13165349_SNP [dm3] 3L_13172249_SNP [dm6]	C	T	5.881e^-5	0.927	INTERGENIC
2L	5417810	2L_5417810_SNP [dm3] 2L_5417810_SNP [dm6]	A	G	5.887e^-5	0.927	INTERGENIC
2L	5417849	2L_5417849_SNP [dm3] 2L_5417849_SNP [dm6]	C	T	5.887e^-5	0.927	INTERGENIC
2R	8690070	2R_8690070_SNP [dm3] 2R_12802565_SNP [dm6]	T	G	5.905e^-5	0.927	DOWNSTREAM sca INTERGENIC
X	10932976	X_10932976_SNP [dm3] X_11038943_SNP [dm6]	A	G	5.910e^-5	0.927	INTRON CG42339	TF binding site BDTNP1_TFBS_twi
3L	12482270	3L_12482270_SNP [dm3] 3L_12489170_SNP [dm6]	G	A	5.970e^-5	0.927	INTRON CG10660
2L	4639880	2L_4639880_SNP [dm3] 2L_4639880_SNP [dm6]	G	T	5.984e^-5	0.927	INTERGENIC
2L	5578196	2L_5578196_SNP [dm3] 2L_5578196_SNP [dm6]	G	A	6.110e^-5	0.927	INTERGENIC
3R	5694646	3R_5694646_SNP [dm3] 3R_9868924_SNP [dm6]	A	G	6.216e^-5	0.927	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3L	8810663	3L_8810663_SNP [dm3] 3L_8817563_SNP [dm6]	G	T	6.218e^-5	0.927	INTERGENIC
3R	2387689	3R_2387689_SNP [dm3] 3R_6561967_SNP [dm6]	C	A	6.220e^-5	0.927	INTRON dpr11
2L	6844320	2L_6844320_SNP [dm3] 2L_6844320_SNP [dm6]	T	C	6.264e^-5	0.927	INTERGENIC
3L	18545628	3L_18545628_SNP [dm3] 3L_18552528_SNP [dm6]	T	A	6.269e^-5	0.927	INTERGENIC
2L	8325962	2L_8325962_SNP [dm3] 2L_8325962_SNP [dm6]	T	C	6.270e^-5	0.927	UPSTREAM CG7781 INTERGENIC
3R	21311750	3R_21311750_SNP [dm3] 3R_25486028_SNP [dm6]	C	G	6.386e^-5	0.927	UTR_3_PRIME Dhap-at DOWNSTREAM CG42488 & 1 other
X	19563617	X_19563617_SNP [dm3] X_19669584_SNP [dm6]	C	T	6.387e^-5	0.927	UPSTREAM Zw INTRON Zw	TF binding site mE1_TFBS_chinmo
2L	16005416	2L_16005416_SNP [dm3] 2L_16005416_SNP [dm6]	C	T	6.414e^-5	0.927	UTR_3_PRIME CG43816 & 1 other UPSTREAM CR44844 DOWNSTREAM CG31820 INTRON beat-Ic
2L	5964676	2L_5964676_SNP [dm3] 2L_5964676_SNP [dm6]	A	G	6.526e^-5	0.927	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd
2R	16288703	2R_16288703_SNP [dm3] 2R_20401198_SNP [dm6]	G	A	6.567e^-5	0.927	INTERGENIC
X	7648677	X_7648677_INS [dm3] X_7754644_INS [dm6]	T	TT	6.677e^-5	0.927	INTERGENIC
2L	5417843	2L_5417843_SNP [dm3] 2L_5417843_SNP [dm6]	T	C	6.719e^-5	0.927	INTERGENIC
3L	20904406	3L_20904406_SNP [dm3] 3L_20911306_SNP [dm6]	G	T	6.785e^-5	0.927	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12865793	2R_12865793_SNP [dm3] 2R_16978288_SNP [dm6]	A	C	6.792e^-5	0.927	INTRON Cbp53E
X	4251555	X_4251555_SNP [dm3] X_4357522_SNP [dm6]	C	T	6.876e^-5	0.927	INTRON norpA
2R	12253035	2R_12253035_SNP [dm3] 2R_16365530_SNP [dm6]	A	C	6.944e^-5	0.927	UTR_5_PRIME CG15711	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	6.982e^-5	0.927	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
3R	22943712	3R_22943712_SNP [dm3] 3R_27117990_SNP [dm6]	T	G	7.046e^-5	0.927	SYNONYMOUS_CODING CG5880 UPSTREAM CG5882	TF binding site mE1_TFBS_cad
X	3265573	X_3265573_SNP [dm3] X_3371540_SNP [dm6]	A	C	7.055e^-5	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	691646	X_691646_SNP [dm3] X_797613_SNP [dm6]	A	G	7.117e^-5	0.927	NON_SYNONYMOUS_CODING Rbf DOWNSTREAM CG16989	TF binding site BDTNP1_TFBS_dl
3L	12066979	3L_12066979_SNP [dm3] 3L_12073879_SNP [dm6]	G	A	7.139e^-5	0.927	INTRON Sema-5c
3L	17822509	3L_17822509_SNP [dm3] 3L_17829409_SNP [dm6]	G	A	7.178e^-5	0.927	SYNONYMOUS_CODING Grd
3L	619506	3L_619506_SNP [dm3] 3L_619506_SNP [dm6]	G	A	7.215e^-5	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
2L	8514798	2L_8514798_SNP [dm3] 2L_8514798_SNP [dm6]	C	T	7.290e^-5	0.927	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14140404	3R_14140404_SNP [dm3] 3R_18314682_SNP [dm6]	T	C	7.366e^-5	0.927	UPSTREAM PKD INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	12880229	2L_12880229_SNP [dm3] 2L_12880229_SNP [dm6]	G	T	7.368e^-5	0.927	INTERGENIC
X	14011500	X_14011500_SNP [dm3] X_14117467_SNP [dm6]	T	A	7.497e^-5	0.927	DOWNSTREAM tRNA:S7:12Eg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15658328	2R_15658328_SNP [dm3] 2R_19770823_SNP [dm6]	C	A	7.536e^-5	0.927	SPLICE_SITE_REGION Or56a INTRON Or56a
X	14011509	X_14011509_SNP [dm3] X_14117476_SNP [dm6]	G	T	7.537e^-5	0.927	DOWNSTREAM tRNA:S7:12Eg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15052466	2L_15052466_SNP [dm3] 2L_15052466_SNP [dm6]	C	G	7.540e^-5	0.927	SPLICE_SITE_REGION ck INTRON ck	regulatory region REDfly_CRMs
3R	5655544	3R_5655544_INS [dm3] 3R_9829822_INS [dm6]	T	TTGCTTT	7.586e^-5	0.927	INTRON Teh1
X	6830794	X_6830794_SNP [dm3] X_6936761_SNP [dm6]	C	T	7.617e^-5	0.927	INTRON CG14431
2L	313845	2L_313845_SNP [dm3] 2L_313845_SNP [dm6]	C	T	7.646e^-5	0.927	INTRON Plc21C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15749316	2L_15749316_SNP [dm3] 2L_15749316_SNP [dm6]	A	T	7.720e^-5	0.927	DOWNSTREAM l_2_35Di & 1 other INTERGENIC
3R	19261728	3R_19261728_SNP [dm3] 3R_23436006_SNP [dm6]	G	A	7.744e^-5	0.927	INTRON CG4374
3L	13255565	3L_13255565_SNP [dm3] 3L_13262465_SNP [dm6]	C	T	7.789e^-5	0.927	INTRON caps
2R	1099463	2R_1099463_SNP [dm3] 2R_5211958_SNP [dm6]	C	A	7.792e^-5	0.927	INTRON Nipped-A	transposable element FlyBase
2L	12702007	2L_12702007_SNP [dm3] 2L_12702007_SNP [dm6]	T	C	7.827e^-5	0.927	SYNONYMOUS_CODING CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	15749361	2L_15749361_SNP [dm3] 2L_15749361_SNP [dm6]	T	C	7.852e^-5	0.927	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
2R	8910218	2R_8910218_DEL [dm3] 2R_13022713_DEL [dm6]	TT	T	7.855e^-5	0.927	INTERGENIC	TF binding site mE1_TFBS_sens
2R	15925695	2R_15925695_SNP [dm3] 2R_20038190_SNP [dm6]	A	C	7.856e^-5	0.927	INTERGENIC
3R	1585487	3R_1585487_SNP [dm3] 3R_5759765_SNP [dm6]	G	C	7.879e^-5	0.927	UTR_3_PRIME CG2082 UPSTREAM Sec8 INTRON CG2082
2R	13184324	2R_13184324_SNP [dm3] 2R_17296819_SNP [dm6]	A	G	7.899e^-5	0.927	INTRON mbl
2R	9512112	2R_9512112_SNP [dm3] 2R_13624607_SNP [dm6]	C	T	7.903e^-5	0.927	INTRON fas
2L	1531597	2L_1531597_SNP [dm3] 2L_1531597_SNP [dm6]	G	C	7.906e^-5	0.927	INTERGENIC
3R	14140519	3R_14140519_SNP [dm3] 3R_18314797_SNP [dm6]	T	G	8.017e^-5	0.933	UPSTREAM PKD INTERGENIC	TF binding site mE1_TFBS_Trl
2L	8503747	2L_8503747_SNP [dm3] 2L_8503747_SNP [dm6]	C	A	8.090e^-5	0.933	INTRON Dh31
3R	22889706	3R_22889706_SNP [dm3] 3R_27063984_SNP [dm6]	A	G	8.151e^-5	0.933	UTR_5_PRIME Nep5 UPSTREAM Nep5 DOWNSTREAM CG34292	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26062811	3R_26062811_SNP [dm3] 3R_30237089_SNP [dm6]	C	T	8.216e^-5	0.933	DOWNSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16183848	2L_16183848_SNP [dm3] 2L_16183848_SNP [dm6]	A	T	8.272e^-5	0.933	INTRON Ca-alpha1D
2L	8512026	2L_8512026_SNP [dm3] 2L_8512026_SNP [dm6]	G	A	8.420e^-5	0.933	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	19215740	3R_19215740_SNP [dm3] 3R_23390018_SNP [dm6]	T	C	8.461e^-5	0.933	UPSTREAM CR43387 INTERGENIC
3R	17907224	3R_17907224_SNP [dm3] 3R_22081502_SNP [dm6]	G	T	8.528e^-5	0.933	INTRON CG13408	TF binding site mE1_TFBS_kn
X	14011657	X_14011657_SNP [dm3] X_14117624_SNP [dm6]	G	A	8.654e^-5	0.933	DOWNSTREAM tRNA:S7:12Eg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8503971	2L_8503971_DEL [dm3] 2L_8503971_DEL [dm6]	AATTCATGCAGGGTTCGTT...	A	8.744e^-5	0.933	INTRON Dh31
3R	5654692	3R_5654692_SNP [dm3] 3R_9828970_SNP [dm6]	T	C	8.761e^-5	0.933	INTRON Teh1
2L	703868	2L_703868_SNP [dm3] 2L_703868_SNP [dm6]	C	T	8.778e^-5	0.933	INTRON ds
3L	5876382	3L_5876382_SNP [dm3] 3L_5883282_SNP [dm6]	C	T	8.792e^-5	0.933	SYNONYMOUS_CODING CG13287	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6396438	3L_6396438_SNP [dm3] 3L_6403338_SNP [dm6]	G	C	8.795e^-5	0.933	INTRON CG42747
2L	5695712	2L_5695712_SNP [dm3] 2L_5695712_SNP [dm6]	A	G	8.828e^-5	0.933	INTERGENIC
2L	5695716	2L_5695716_SNP [dm3] 2L_5695716_SNP [dm6]	C	T	8.828e^-5	0.933	INTERGENIC
2L	14635880	2L_14635880_SNP [dm3] 2L_14635880_SNP [dm6]	A	C	8.932e^-5	0.933	INTRON osp
3R	27462962	3R_27462962_SNP [dm3] 3R_31637240_SNP [dm6]	A	T	8.982e^-5	0.933	INTRON kek6
3R	12799800	3R_12799800_SNP [dm3] 3R_16974078_SNP [dm6]	G	T	9.014e^-5	0.933	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	9.086e^-5	0.933	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2277485	X_2277485_SNP [dm3] X_2383452_SNP [dm6]	G	A	9.086e^-5	0.933	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18369046	2R_18369046_SNP [dm3] 2R_22481541_SNP [dm6]	G	C	9.171e^-5	0.933	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12881066	2L_12881066_DEL [dm3] 2L_12881066_DEL [dm6]	AT	A	9.176e^-5	0.933	INTERGENIC
2R	1081532	2R_1081532_SNP [dm3] 2R_5194027_SNP [dm6]	T	A	9.263e^-5	0.933	INTRON Nipped-A	transposable element FlyBase
2L	6704957	2L_6704957_SNP [dm3] 2L_6704957_SNP [dm6]	T	A	9.328e^-5	0.933	INTRON Tsp	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	20574323	X_20574323_SNP [dm3] X_20703296_SNP [dm6]	G	A	9.355e^-5	0.933	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	9.365e^-5	0.933	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	9.365e^-5	0.933	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6879367	2R_6879367_SNP [dm3] 2R_10991862_SNP [dm6]	G	A	9.401e^-5	0.933	INTRON luna	TF binding site mE1_TFBS_chinmo
2R	18608381	2R_18608381_SNP [dm3] 2R_22720876_SNP [dm6]	T	C	9.472e^-5	0.935	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	10357218	3L_10357218_SNP [dm3] 3L_10364118_SNP [dm6]	A	G	9.631e^-5	0.94	UPSTREAM CR44327 EXON CR44327	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5248168	3L_5248168_SNP [dm3] 3L_5255068_SNP [dm6]	T	G	9.637e^-5	0.94	INTRON shep
3R	14914361	3R_14914361_SNP [dm3] 3R_19088639_SNP [dm6]	G	A	9.668e^-5	0.94	INTRON cdi
3R	1777379	3R_1777379_SNP [dm3] 3R_5951657_SNP [dm6]	G	C	9.745e^-5	0.942	INTRON CG34113
2L	9868904	2L_9868904_SNP [dm3] 2L_9868904_SNP [dm6]	A	G	9.838e^-5	0.946	INTRON nAChRalpha6
2R	14193734	2R_14193734_SNP [dm3] 2R_18306229_SNP [dm6]	G	A	9.894e^-5	0.947	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
3L	8438520	3L_8438520_SNP [dm3] 3L_8445420_SNP [dm6]	T	A	9.977e^-5	0.949	INTRON CG6983	TF binding site BDTNP1_TFBS_twi
2L	15749405	2L_15749405_SNP [dm3] 2L_15749405_SNP [dm6]	C	T	1.003e^-4	0.949	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
2L	15749307	2L_15749307_SNP [dm3] 2L_15749307_SNP [dm6]	T	A	1.007e^-4	0.949	DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2R	11999790	2R_11999790_SNP [dm3] 2R_16112285_SNP [dm6]	T	G	1.015e^-4	0.952	NON_SYNONYMOUS_CODING Asph
2R	9513631	2R_9513631_DEL [dm3] 2R_13626126_DEL [dm6]	TATGT	T	1.023e^-4	0.955	INTRON fas
2R	8501466	2R_8501466_SNP [dm3] 2R_12613961_SNP [dm6]	A	C	1.048e^-4	0.973	UTR_5_PRIME Galphaq UTR_3_PRIME CG45086 INTRON Galphaq	TF binding site BDTNP1_TFBS_dl
3R	22927515	3R_22927515_SNP [dm3] 3R_27101793_SNP [dm6]	T	G	1.077e^-4	0.974	INTRON CG17189
X	6980828	X_6980828_SNP [dm3] X_7086795_SNP [dm6]	A	T	1.090e^-4	0.974	UPSTREAM mir-4956 INTRON Sxl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	18545721	3L_18545721_SNP [dm3] 3L_18552621_SNP [dm6]	C	G	1.099e^-4	0.974	INTERGENIC
3R	12799894	3R_12799894_SNP [dm3] 3R_16974172_SNP [dm6]	T	A	1.113e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	6396442	3L_6396442_SNP [dm3] 3L_6403342_SNP [dm6]	T	C	1.125e^-4	0.974	INTRON CG42747
3R	6425078	3R_6425078_SNP [dm3] 3R_10599356_SNP [dm6]	T	A	1.130e^-4	0.974	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15664908	X_15664908_SNP [dm3] X_15770875_SNP [dm6]	C	A	1.131e^-4	0.974	SYNONYMOUS_CODING CG33172	TF binding site mE1_TFBS_sens
3L	13255541	3L_13255541_SNP [dm3] 3L_13262441_SNP [dm6]	A	G	1.134e^-4	0.974	INTRON caps
X	2277475	X_2277475_SNP [dm3] X_2383442_SNP [dm6]	C	G	1.138e^-4	0.974	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5678943	2L_5678943_SNP [dm3] 2L_5678943_SNP [dm6]	G	A	1.142e^-4	0.974	SYNONYMOUS_CODING CG12511
2R	6589767	2R_6589767_SNP [dm3] 2R_10702262_SNP [dm6]	C	T	1.155e^-4	0.974	INTRON stan
3L	7604946	3L_7604946_INS [dm3] 3L_7611846_INS [dm6]	T	TT	1.163e^-4	0.974	INTRON CG33275
X	15676774	X_15676774_SNP [dm3] X_15782741_SNP [dm6]	G	A	1.164e^-4	0.974	SYNONYMOUS_CODING Efhc1.1
2L	10619215	2L_10619215_SNP [dm3] 2L_10619215_SNP [dm6]	G	A	1.165e^-4	0.974	INTRON Trim9
3L	6800672	3L_6800672_SNP [dm3] 3L_6807572_SNP [dm6]	A	G	1.178e^-4	0.974	INTERGENIC
2L	18575434	2L_18575434_SNP [dm3] 2L_18575434_SNP [dm6]	C	T	1.180e^-4	0.974	INTRON Pde11
2L	1531696	2L_1531696_SNP [dm3] 2L_1531696_SNP [dm6]	G	C	1.184e^-4	0.974	INTERGENIC
2R	9249830	2R_9249830_SNP [dm3] 2R_13362325_SNP [dm6]	C	G	1.185e^-4	0.974	EXON CR45312
3R	19463224	3R_19463224_SNP [dm3] 3R_23637502_SNP [dm6]	C	T	1.193e^-4	0.974	INTRON CG31145
3L	8438521	3L_8438521_SNP [dm3] 3L_8445421_SNP [dm6]	C	T	1.206e^-4	0.974	INTRON CG6983	TF binding site BDTNP1_TFBS_twi
3L	8439971	3L_8439971_SNP [dm3] 3L_8446871_SNP [dm6]	C	T	1.206e^-4	0.974	INTRON CG6983
2L	1099815	2L_1099815_SNP [dm3] 2L_1099815_SNP [dm6]	C	T	1.208e^-4	0.974	INTRON CG4629
3R	22457730	3R_22457730_SNP [dm3] 3R_26632008_SNP [dm6]	C	A	1.209e^-4	0.974	SYNONYMOUS_CODING TwdlN	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3044732	2L_3044732_SNP [dm3] 2L_3044732_SNP [dm6]	G	A	1.219e^-4	0.974	INTRON v_2_k05816
2R	17121342	2R_17121342_SNP [dm3] 2R_21233837_SNP [dm6]	T	C	1.220e^-4	0.974	INTRON ASPP
3R	5761959	3R_5761959_SNP [dm3] 3R_9936237_SNP [dm6]	A	T	1.227e^-4	0.974	INTRON Glut4EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19908080	2R_19908080_SNP [dm3] 2R_24020557_SNP [dm6]	T	C	1.230e^-4	0.974	DOWNSTREAM CG3121 INTRON CG3907
2R	9176521	2R_9176521_SNP [dm3] 2R_13289016_SNP [dm6]	T	C	1.232e^-4	0.974	INTRON Dh31-R
3L	11041819	3L_11041819_SNP [dm3] 3L_11048719_SNP [dm6]	T	A	1.237e^-4	0.974	INTRON CG43693
3R	18365035	3R_18365035_SNP [dm3] 3R_22539313_SNP [dm6]	T	A	1.250e^-4	0.974	UPSTREAM CR45646 INTRON CG5326
3R	2457128	3R_2457128_SNP [dm3] 3R_6631406_SNP [dm6]	C	G	1.255e^-4	0.974	DOWNSTREAM sunz INTERGENIC
2R	7262550	2R_7262550_SNP [dm3] 2R_11375045_SNP [dm6]	G	A	1.263e^-4	0.974	UPSTREAM CG13203 INTRON CG13203	TF binding site mE1_TFBS_chinmo
3L	9788883	3L_9788883_SNP [dm3] 3L_9795783_SNP [dm6]	C	T	1.266e^-4	0.974	INTRON Zasp67
2L	15749466	2L_15749466_SNP [dm3] 2L_15749466_SNP [dm6]	C	T	1.269e^-4	0.974	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
3L	4952010	3L_4952010_SNP [dm3] 3L_4952010_SNP [dm6]	A	C	1.275e^-4	0.974	INTRON Con	TF binding site mE1_TFBS_chinmo
2L	12881069	2L_12881069_SNP [dm3] 2L_12881069_SNP [dm6]	G	A	1.280e^-4	0.974	INTERGENIC
X	6830801	X_6830801_DEL [dm3] X_6936768_DEL [dm6]	ACA	A	1.297e^-4	0.974	INTRON CG14431
X	14853283	X_14853283_SNP [dm3] X_14959250_SNP [dm6]	G	A	1.307e^-4	0.974	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	15957541	3L_15957541_SNP [dm3] 3L_15964441_SNP [dm6]	T	C	1.309e^-4	0.974	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5695684	2L_5695684_SNP [dm3] 2L_5695684_SNP [dm6]	C	G	1.310e^-4	0.974	INTERGENIC
3R	12799805	3R_12799805_SNP [dm3] 3R_16974083_SNP [dm6]	T	C	1.329e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	11904528	X_11904528_SNP [dm3] X_12010495_SNP [dm6]	G	C	1.329e^-4	0.974	NON_SYNONYMOUS_CODING CG1492 DOWNSTREAM CG1806
X	9328507	X_9328507_SNP [dm3] X_9434474_SNP [dm6]	A	G	1.330e^-4	0.974	INTRON mgl
3L	14498801	3L_14498801_SNP [dm3] 3L_14505701_SNP [dm6]	A	C	1.337e^-4	0.974	INTRON bbg
2R	20223516	2R_20223516_SNP [dm3] 2R_24335993_SNP [dm6]	A	T	1.341e^-4	0.974	UPSTREAM CR44282 INTERGENIC
3R	19774105	3R_19774105_SNP [dm3] 3R_23948383_SNP [dm6]	A	G	1.347e^-4	0.974	UTR_5_PRIME CG12268
3R	25276336	3R_25276336_SNP [dm3] 3R_29450614_SNP [dm6]	T	G	1.356e^-4	0.974	INTRON Ptp99A
3R	4463463	3R_4463463_SNP [dm3] 3R_8637741_SNP [dm6]	G	A	1.356e^-4	0.974	INTERGENIC
2R	5281576	2R_5281576_SNP [dm3] 2R_9394071_SNP [dm6]	T	C	1.361e^-4	0.974	SYNONYMOUS_CODING l_2_03659	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	27462948	3R_27462948_SNP [dm3] 3R_31637226_SNP [dm6]	A	C	1.372e^-4	0.974	INTRON kek6
2L	16965651	2L_16965651_SNP [dm3] 2L_16965651_SNP [dm6]	A	G	1.378e^-4	0.974	EXON CR45285
2R	11972556	2R_11972556_SNP [dm3] 2R_16085051_SNP [dm6]	G	A	1.386e^-4	0.974	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	1.389e^-4	0.974	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2R	14787598	2R_14787598_SNP [dm3] 2R_18900093_SNP [dm6]	A	C	1.392e^-4	0.974	DOWNSTREAM snoRNA:Me28S-U1130 INTRON sano
2R	15435892	2R_15435892_SNP [dm3] 2R_19548387_SNP [dm6]	T	C	1.410e^-4	0.974	INTRON sm
3R	15907897	3R_15907897_SNP [dm3] 3R_20082175_SNP [dm6]	G	C	1.416e^-4	0.974	SYNONYMOUS_CODING Rh3	TF binding site mE1_TFBS_cad
3L	5460143	3L_5460143_SNP [dm3] 3L_5467043_SNP [dm6]	T	A	1.416e^-4	0.974	INTERGENIC
3R	20515226	3R_20515226_DEL [dm3] 3R_24689504_DEL [dm6]	TA	C	1.423e^-4	0.974	INTRON slo
3R	3393136	3R_3393136_SNP [dm3] 3R_7567414_SNP [dm6]	G	A	1.428e^-4	0.974	INTERGENIC
3R	18733389	3R_18733389_SNP [dm3] 3R_22907667_SNP [dm6]	A	G	1.429e^-4	0.974	INTRON klg
2R	18608261	2R_18608261_SNP [dm3] 2R_22720756_SNP [dm6]	G	C	1.435e^-4	0.974	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18607238	2R_18607238_SNP [dm3] 2R_22719733_SNP [dm6]	G	A	1.442e^-4	0.974	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18302813	3R_18302813_SNP [dm3] 3R_22477091_SNP [dm6]	T	A	1.442e^-4	0.974	INTRON Nrx-1
3L	18545714	3L_18545714_SNP [dm3] 3L_18552614_SNP [dm6]	A	C	1.450e^-4	0.974	INTERGENIC
3L	15946266	3L_15946266_SNP [dm3] 3L_15953166_SNP [dm6]	G	C	1.450e^-4	0.974	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15014646	2L_15014646_SNP [dm3] 2L_15014646_SNP [dm6]	A	G	1.452e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16725434	3R_16725434_SNP [dm3] 3R_20899712_SNP [dm6]	A	G	1.456e^-4	0.974	INTERGENIC
2L	4635277	2L_4635277_SNP [dm3] 2L_4635277_SNP [dm6]	A	G	1.469e^-4	0.974	UPSTREAM CR45452 INTERGENIC
3L	6801029	3L_6801029_SNP [dm3] 3L_6807929_SNP [dm6]	G	C	1.471e^-4	0.974	INTERGENIC
3L	18205542	3L_18205542_SNP [dm3] 3L_18212442_SNP [dm6]	C	T	1.475e^-4	0.974	INTERGENIC
3L	13255585	3L_13255585_SNP [dm3] 3L_13262485_SNP [dm6]	C	T	1.477e^-4	0.974	INTRON caps
2R	12853304	2R_12853304_SNP [dm3] 2R_16965799_SNP [dm6]	A	G	1.482e^-4	0.974	DOWNSTREAM CR44376 INTERGENIC
3L	12476252	3L_12476252_SNP [dm3] 3L_12483152_SNP [dm6]	A	G	1.498e^-4	0.974	INTRON CG10663 & 1 other
3R	14979279	3R_14979279_SNP [dm3] 3R_19153557_SNP [dm6]	C	T	1.502e^-4	0.974	UTR_5_PRIME CG5835 DOWNSTREAM CG11779	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	13722023	2L_13722023_SNP [dm3] 2L_13722023_SNP [dm6]	T	C	1.509e^-4	0.974	DOWNSTREAM CG9014 INTERGENIC
2L	3870156	2L_3870156_SNP [dm3] 2L_3870156_SNP [dm6]	T	C	1.513e^-4	0.974	SYNONYMOUS_CODING Cep97 UTR_5_PRIME Cep97
2R	9553695	2R_9553695_SNP [dm3] 2R_13666190_SNP [dm6]	A	C	1.518e^-4	0.974	SYNONYMOUS_CODING CG13337 INTRON fas
2R	15433939	2R_15433939_SNP [dm3] 2R_19546434_SNP [dm6]	A	G	1.519e^-4	0.974	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	5684723	2L_5684723_DEL [dm3] 2L_5684723_DEL [dm6]	CGC	C	1.523e^-4	0.974	INTERGENIC
2R	18708343	2R_18708343_SNP [dm3] 2R_22820838_SNP [dm6]	G	C	1.528e^-4	0.974	UPSTREAM CG42284 INTRON CG30271	TF binding site mE1_TFBS_chinmo
3L	6428359	3L_6428359_SNP [dm3] 3L_6435259_SNP [dm6]	C	A	1.532e^-4	0.974	INTRON CG42747	TF binding site mE1_TFBS_cad
3R	13587671	3R_13587671_SNP [dm3] 3R_17761949_SNP [dm6]	T	G	1.543e^-4	0.974	INTRON TyrR
3L	12663042	3L_12663042_SNP [dm3] 3L_12669942_SNP [dm6]	A	C	1.554e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10912445	2R_10912445_INS [dm3] 2R_15024940_INS [dm6]	C	CC	1.556e^-4	0.974	UPSTREAM CR45256 & 1 other INTRON hbs	TF binding site BDTNP1_TFBS_dl
2L	4101235	2L_4101235_SNP [dm3] 2L_4101235_SNP [dm6]	T	A	1.556e^-4	0.974	INTRON ed
3L	12722162	3L_12722162_SNP [dm3] 3L_12729062_SNP [dm6]	T	C	1.562e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1531674	2L_1531674_SNP [dm3] 2L_1531674_SNP [dm6]	A	T	1.564e^-4	0.974	INTERGENIC
3R	12799763	3R_12799763_INS [dm3] 3R_16974041_INS [dm6]	C	TCTTAAACTATGAGTG...	1.572e^-4	0.974	INTERGENIC
2R	1148273	2R_1148273_SNP [dm3] 2R_5260768_SNP [dm6]	C	T	1.573e^-4	0.974	INTRON d4
X	11907152	X_11907152_SNP [dm3] X_12013119_SNP [dm6]	C	A	1.587e^-4	0.974	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8634444	2R_8634444_SNP [dm3] 2R_12746939_SNP [dm6]	C	A	1.591e^-4	0.974	INTRON CG42663	TF binding site mE1_TFBS_cad
2L	7465335	2L_7465335_SNP [dm3] 2L_7465335_SNP [dm6]	C	T	1.604e^-4	0.974	INTERGENIC
3R	26615310	3R_26615310_SNP [dm3] 3R_30789588_SNP [dm6]	T	C	1.616e^-4	0.974	DOWNSTREAM wts & 1 other INTERGENIC
2L	12702049	2L_12702049_SNP [dm3] 2L_12702049_SNP [dm6]	T	A	1.623e^-4	0.974	SYNONYMOUS_CODING CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	18302889	3R_18302889_SNP [dm3] 3R_22477167_SNP [dm6]	G	A	1.624e^-4	0.974	INTRON Nrx-1
3L	16345997	3L_16345997_SNP [dm3] 3L_16352897_SNP [dm6]	A	C	1.629e^-4	0.974	SYNONYMOUS_CODING CG4933 UPSTREAM CG4925 DOWNSTREAM Pdh	TF binding site mE1_TFBS_sens
2L	10510692	2L_10510692_SNP [dm3] 2L_10510692_SNP [dm6]	G	A	1.633e^-4	0.974	UTR_3_PRIME Fatp & 1 other UPSTREAM CG7384 DOWNSTREAM Fatp & 1 other	TF binding site mE1_TFBS_cad
3R	16647103	3R_16647103_SNP [dm3] 3R_20821381_SNP [dm6]	C	A	1.635e^-4	0.974	UPSTREAM RpS20 INTRON CG17271	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	16647376	3R_16647376_SNP [dm3] 3R_20821654_SNP [dm6]	T	C	1.644e^-4	0.974	NON_SYNONYMOUS_CODING CG17271 UPSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	18957265	2R_18957265_SNP [dm3] 2R_23069742_SNP [dm6]	C	T	1.657e^-4	0.974	UPSTREAM l_2_k09913 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4406333	2R_4406333_DEL [dm3] 2R_8518828_DEL [dm6]	AC	A	1.658e^-4	0.974	INTRON mtt
2R	18604756	2R_18604756_SNP [dm3] 2R_22717251_SNP [dm6]	G	C	1.658e^-4	0.974	DOWNSTREAM jbug & 1 other INTERGENIC
3L	9143795	3L_9143795_SNP [dm3] 3L_9150695_SNP [dm6]	A	T	1.661e^-4	0.974	UTR_3_PRIME Rdl
2L	9832098	2L_9832098_SNP [dm3] 2L_9832098_SNP [dm6]	G	A	1.663e^-4	0.974	INTRON nAChRalpha6
3L	7597793	3L_7597793_SNP [dm3] 3L_7604693_SNP [dm6]	T	G	1.667e^-4	0.974	UPSTREAM CG33275 INTRON CG33275
3L	9284789	3L_9284789_SNP [dm3] 3L_9291689_SNP [dm6]	A	G	1.668e^-4	0.974	INTERGENIC
3L	6428159	3L_6428159_SNP [dm3] 3L_6435059_SNP [dm6]	C	T	1.672e^-4	0.974	INTRON CG42747
3L	12482248	3L_12482248_INS [dm3] 3L_12489148_INS [dm6]	T	TT	1.672e^-4	0.974	INTRON CG10660
2R	16439648	2R_16439648_SNP [dm3] 2R_20552143_SNP [dm6]	T	G	1.682e^-4	0.974	UPSTREAM CG13430 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	4424003	X_4424003_SNP [dm3] X_4529970_SNP [dm6]	C	G	1.684e^-4	0.974	UPSTREAM CG3556 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	8197807	3L_8197807_DEL [dm3] 3L_8204707_DEL [dm6]	CGCATTCCAATCCGAACCGC...	G	1.688e^-4	0.974	INTERGENIC
2R	6788078	2R_6788078_SNP [dm3] 2R_10900573_SNP [dm6]	A	G	1.689e^-4	0.974	INTERGENIC
3L	12476275	3L_12476275_INS [dm3] 3L_12483175_INS [dm6]	A	ATTTACA	1.691e^-4	0.974	INTRON CG10663 & 1 other
2R	7284725	2R_7284725_SNP [dm3] 2R_11397220_SNP [dm6]	G	A	1.700e^-4	0.974	START_GAINED sprt UTR_5_PRIME sprt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13111385	2L_13111385_SNP [dm3] 2L_13111385_SNP [dm6]	A	T	1.713e^-4	0.974	INTERGENIC
2R	18135822	2R_18135822_INS [dm3] 2R_22248317_INS [dm6]	G	GTGG	1.717e^-4	0.974	INTRON dve	regulatory region REDfly_CRMs
2L	5695765	2L_5695765_SNP [dm3] 2L_5695765_SNP [dm6]	A	G	1.737e^-4	0.974	INTERGENIC
3R	3219936	3R_3219936_SNP [dm3] 3R_7394214_SNP [dm6]	G	A	1.740e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10184714	3L_10184714_SNP [dm3] 3L_10191614_SNP [dm6]	C	T	1.740e^-4	0.974	SYNONYMOUS_CODING ect
3R	4874480	3R_4874480_INS [dm3] 3R_9048758_INS [dm6]	A	ACATA	1.743e^-4	0.974	UPSTREAM Rel & 1 other INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20703813	2L_20703813_SNP [dm3] 2L_20703813_SNP [dm6]	C	T	1.744e^-4	0.974	INTRON Hr38
2R	14629572	2R_14629572_SNP [dm3] 2R_18742067_SNP [dm6]	T	G	1.746e^-4	0.974	UPSTREAM CR30121 DOWNSTREAM CG18609 INTRON Hs3st-A
3R	12799780	3R_12799780_SNP [dm3] 3R_16974058_SNP [dm6]	T	C	1.747e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	5796413	2R_5796413_SNP [dm3] 2R_9908908_SNP [dm6]	T	G	1.755e^-4	0.974	INTRON FMRFa	TF binding site mE1_TFBS_chinmo
2L	5695781	2L_5695781_SNP [dm3] 2L_5695781_SNP [dm6]	G	A	1.758e^-4	0.974	INTERGENIC
2L	8513167	2L_8513167_SNP [dm3] 2L_8513167_SNP [dm6]	C	T	1.759e^-4	0.974	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	15435800	2R_15435800_SNP [dm3] 2R_19548295_SNP [dm6]	C	A	1.760e^-4	0.974	INTRON sm
2R	9535437	2R_9535437_SNP [dm3] 2R_13647932_SNP [dm6]	G	A	1.762e^-4	0.974	INTRON fas
X	4251590	X_4251590_SNP [dm3] X_4357557_SNP [dm6]	A	G	1.764e^-4	0.974	INTRON norpA
2L	5695778	2L_5695778_SNP [dm3] 2L_5695778_SNP [dm6]	T	C	1.771e^-4	0.974	INTERGENIC
3L	12893221	3L_12893221_SNP [dm3] 3L_12900121_SNP [dm6]	T	C	1.775e^-4	0.974	INTERGENIC
2L	5695756	2L_5695756_SNP [dm3] 2L_5695756_SNP [dm6]	A	G	1.780e^-4	0.974	INTERGENIC
2R	8486258	2R_8486258_SNP [dm3] 2R_12598753_SNP [dm6]	T	A	1.781e^-4	0.974	INTRON Amph
X	5366385	X_5366385_SNP [dm3] X_5472352_SNP [dm6]	G	A	1.785e^-4	0.974	INTRON SPR
X	4259515	X_4259515_SNP [dm3] X_4365482_SNP [dm6]	T	G	1.789e^-4	0.974	UPSTREAM CG3626 DOWNSTREAM mir-982 & 2 others INTERGENIC
3R	15137382	3R_15137382_DEL [dm3] 3R_19311660_DEL [dm6]	AGTTAGTC	A	1.798e^-4	0.974	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	6511636	3R_6511636_SNP [dm3] 3R_10685914_SNP [dm6]	A	T	1.800e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6511659	3R_6511659_SNP [dm3] 3R_10685937_SNP [dm6]	G	T	1.800e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15082088	3L_15082088_SNP [dm3] 3L_15088988_SNP [dm6]	A	G	1.806e^-4	0.974	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11001223	2L_11001223_DEL [dm3] 2L_11001223_DEL [dm6]	TGGA	T	1.808e^-4	0.974	UPSTREAM lectin-33A & 1 other INTRON aub
2R	13785424	2R_13785424_SNP [dm3] 2R_17897919_SNP [dm6]	A	G	1.817e^-4	0.974	INTRON Elk	TF binding site BDTNP1_TFBS_twi
3L	18684289	3L_18684289_SNP [dm3] 3L_18691189_SNP [dm6]	G	T	1.818e^-4	0.974	INTERGENIC
3L	17829156	3L_17829156_SNP [dm3] 3L_17836056_SNP [dm6]	C	A	1.836e^-4	0.974	UPSTREAM CG32189 INTRON Grd	transposable element FlyBase
2L	10014521	2L_10014521_SNP [dm3] 2L_10014521_SNP [dm6]	A	G	1.856e^-4	0.974	SYNONYMOUS_CODING CG13131
3L	9064838	3L_9064838_SNP [dm3] 3L_9071738_SNP [dm6]	A	C	1.860e^-4	0.974	SPLICE_SITE_REGION CG4911 INTRON CG4911
2L	369776	2L_369776_SNP [dm3] 2L_369776_SNP [dm6]	A	G	1.861e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12893217	3L_12893217_SNP [dm3] 3L_12900117_SNP [dm6]	A	T	1.871e^-4	0.974	INTERGENIC
3L	12066932	3L_12066932_SNP [dm3] 3L_12073832_SNP [dm6]	A	T	1.876e^-4	0.974	INTRON Sema-5c
3L	18545707	3L_18545707_SNP [dm3] 3L_18552607_SNP [dm6]	A	T	1.878e^-4	0.974	INTERGENIC
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	1.878e^-4	0.974	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8511667	2L_8511667_SNP [dm3] 2L_8511667_SNP [dm6]	C	G	1.888e^-4	0.974	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2780137	2R_2780137_SNP [dm3] 2R_6892632_SNP [dm6]	G	C	1.901e^-4	0.974	INTRON CG30158
2L	12365239	2L_12365239_SNP [dm3] 2L_12365239_SNP [dm6]	A	T	1.903e^-4	0.974	INTRON bru-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
3L	8220055	3L_8220055_SNP [dm3] 3L_8226955_SNP [dm6]	A	G	1.904e^-4	0.974	INTERGENIC
2R	9109903	2R_9109903_SNP [dm3] 2R_13222398_SNP [dm6]	T	C	1.909e^-4	0.974	UTR_5_PRIME Fsn UPSTREAM Dp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	19463212	3R_19463212_SNP [dm3] 3R_23637490_SNP [dm6]	T	A	1.910e^-4	0.974	INTRON CG31145
3R	2453103	3R_2453103_INS [dm3] 3R_6627381_INS [dm6]	T	TCCTTA	1.917e^-4	0.974	DOWNSTREAM CG15177 INTRON sowi
2R	16439653	2R_16439653_SNP [dm3] 2R_20552148_SNP [dm6]	C	G	1.921e^-4	0.974	UPSTREAM CG13430 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	1.925e^-4	0.974	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	12443152	2L_12443152_SNP [dm3] 2L_12443152_SNP [dm6]	A	G	1.930e^-4	0.974	SYNONYMOUS_CODING Oatp33Ea
2L	310727	2L_310727_SNP [dm3] 2L_310727_SNP [dm6]	T	C	1.932e^-4	0.974	INTRON Plc21C	TF binding site mE1_TFBS_Trl
2L	15052340	2L_15052340_SNP [dm3] 2L_15052340_SNP [dm6]	C	T	1.933e^-4	0.974	INTRON ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7484500	X_7484500_SNP [dm3] X_7590467_SNP [dm6]	G	C	1.934e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs
2R	19892922	2R_19892922_SNP [dm3] 2R_24005399_SNP [dm6]	C	T	1.941e^-4	0.974	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2699760	3R_2699760_SNP [dm3] 3R_6874038_SNP [dm6]	C	T	1.942e^-4	0.974	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	12871172	2L_12871172_SNP [dm3] 2L_12871172_SNP [dm6]	A	G	1.950e^-4	0.974	INTERGENIC
2L	16843933	2L_16843933_SNP [dm3] 2L_16843933_SNP [dm6]	G	A	1.955e^-4	0.974	SYNONYMOUS_CODING CG13284
3L	9303739	3L_9303739_SNP [dm3] 3L_9310639_SNP [dm6]	A	T	1.956e^-4	0.974	INTERGENIC
2L	1532622	2L_1532622_SNP [dm3] 2L_1532622_SNP [dm6]	C	A	1.957e^-4	0.974	INTERGENIC
X	6481308	X_6481308_SNP [dm3] X_6587275_SNP [dm6]	A	G	1.960e^-4	0.974	INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10347392	2L_10347392_SNP [dm3] 2L_10347392_SNP [dm6]	T	G	1.961e^-4	0.974	SYNONYMOUS_CODING CG5022 DOWNSTREAM CG34367	TF binding site mE1_TFBS_cad
3L	11522961	3L_11522961_SNP [dm3] 3L_11529861_SNP [dm6]	G	A	1.963e^-4	0.974	INTRON Mob2
X	2967837	X_2967837_SNP [dm3] X_3073804_SNP [dm6]	T	A	1.967e^-4	0.974	INTRON kirre
3R	6194218	3R_6194218_INS [dm3] 3R_10368496_INS [dm6]	C	CA	1.970e^-4	0.974	INTRON Rfx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7112914	2L_7112914_SNP [dm3] 2L_7112914_SNP [dm6]	C	T	1.984e^-4	0.974	INTRON Pvf3	TF binding site BDTNP1_TFBS_twi
2R	18603887	2R_18603887_SNP [dm3] 2R_22716382_SNP [dm6]	T	A	1.997e^-4	0.974	SYNONYMOUS_CODING CG30268 DOWNSTREAM jbug	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14352552	3L_14352552_DEL [dm3] 3L_14359452_DEL [dm6]	CAAATATCTATC...	C	2.005e^-4	0.974	INTRON fz
2R	9508562	2R_9508562_SNP [dm3] 2R_13621057_SNP [dm6]	T	C	2.005e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	9675572	3R_9675572_SNP [dm3] 3R_13849850_SNP [dm6]	T	A	2.008e^-4	0.974	INTERGENIC
3R	3363083	3R_3363083_SNP [dm3] 3R_7537361_SNP [dm6]	T	G	2.014e^-4	0.974	NON_SYNONYMOUS_CODING alpha-Est4 UPSTREAM alpha-Est5	TF binding site mE1_TFBS_sens
2R	9774108	2R_9774108_SNP [dm3] 2R_13886603_SNP [dm6]	T	A	2.025e^-4	0.974	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	15458421	2L_15458421_SNP [dm3] 2L_15458421_SNP [dm6]	T	G	2.025e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	18107021	2L_18107021_SNP [dm3] 2L_18107021_SNP [dm6]	T	C	2.046e^-4	0.974	INTERGENIC
2L	12303665	2L_12303665_SNP [dm3] 2L_12303665_SNP [dm6]	T	C	2.049e^-4	0.974	INTRON aret
2R	18250398	2R_18250398_SNP [dm3] 2R_22362893_SNP [dm6]	A	T	2.050e^-4	0.974	INTRON Liprin-gamma
3L	16347143	3L_16347143_SNP [dm3] 3L_16354043_SNP [dm6]	C	G	2.051e^-4	0.974	NON_SYNONYMOUS_CODING Pdh DOWNSTREAM CG4933 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15909618	3R_15909618_SNP [dm3] 3R_20083896_SNP [dm6]	T	C	2.058e^-4	0.974	INTERGENIC
2L	1534304	2L_1534304_SNP [dm3] 2L_1534304_SNP [dm6]	T	C	2.064e^-4	0.974	INTERGENIC
3L	6429390	3L_6429390_SNP [dm3] 3L_6436290_SNP [dm6]	T	C	2.068e^-4	0.974	INTRON CG42747	TF binding site mE1_TFBS_cad
2R	9508560	2R_9508560_SNP [dm3] 2R_13621055_SNP [dm6]	T	G	2.071e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	9388853	2L_9388853_SNP [dm3] 2L_9388853_SNP [dm6]	A	C	2.082e^-4	0.974	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18608063	2R_18608063_SNP [dm3] 2R_22720558_SNP [dm6]	C	G	2.092e^-4	0.974	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18608057	2R_18608057_SNP [dm3] 2R_22720552_SNP [dm6]	G	A	2.093e^-4	0.974	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10014419	2L_10014419_SNP [dm3] 2L_10014419_SNP [dm6]	T	C	2.096e^-4	0.974	SYNONYMOUS_CODING CG13131
2L	15206499	2L_15206499_SNP [dm3] 2L_15206499_SNP [dm6]	T	C	2.103e^-4	0.974	INTERGENIC
2R	15226002	2R_15226002_SNP [dm3] 2R_19338497_SNP [dm6]	T	A	2.111e^-4	0.974	INTRON Rgk1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8157819	3L_8157819_SNP [dm3] 3L_8164719_SNP [dm6]	G	A	2.125e^-4	0.974	UPSTREAM CG13675 INTRON CG13675
2R	10290265	2R_10290265_SNP [dm3] 2R_14402760_SNP [dm6]	T	C	2.130e^-4	0.974	INTERGENIC
2L	11685021	2L_11685021_SNP [dm3] 2L_11685021_SNP [dm6]	G	A	2.141e^-4	0.974	INTERGENIC
3L	6800561	3L_6800561_SNP [dm3] 3L_6807461_SNP [dm6]	G	A	2.156e^-4	0.974	INTERGENIC
2L	4417675	2L_4417675_SNP [dm3] 2L_4417675_SNP [dm6]	T	C	2.158e^-4	0.974	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2R	8867020	2R_8867020_INS [dm3] 2R_12979515_INS [dm6]	G	GG	2.160e^-4	0.974	INTRON Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	12480496	2L_12480496_SNP [dm3] 2L_12480496_SNP [dm6]	A	G	2.164e^-4	0.974	INTRON bun	TF binding site BDTNP1_TFBS_dl
3L	8880121	3L_8880121_SNP [dm3] 3L_8887021_SNP [dm6]	A	G	2.167e^-4	0.974	INTRON dally
2R	13184459	2R_13184459_SNP [dm3] 2R_17296954_SNP [dm6]	G	C	2.176e^-4	0.974	INTRON mbl
3L	17333841	3L_17333841_SNP [dm3] 3L_17340741_SNP [dm6]	T	G	2.185e^-4	0.974	NON_SYNONYMOUS_CODING CG13727 UPSTREAM tRNA:CR32173	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10014407	2L_10014407_SNP [dm3] 2L_10014407_SNP [dm6]	A	C	2.187e^-4	0.974	NON_SYNONYMOUS_CODING CG13131
3L	7968514	3L_7968514_SNP [dm3] 3L_7975414_SNP [dm6]	A	T	2.192e^-4	0.974	UPSTREAM CG8042 & 1 other DOWNSTREAM HP4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk
X	13056607	X_13056607_SNP [dm3] X_13162574_SNP [dm6]	A	T	2.195e^-4	0.974	SPLICE_SITE_REGION CG34411 UTR_3_PRIME CG12096 DOWNSTREAM CG12096 INTRON CG34411
3L	5461333	3L_5461333_SNP [dm3] 3L_5468233_SNP [dm6]	T	C	2.197e^-4	0.974	INTERGENIC
2L	3889677	2L_3889677_SNP [dm3] 2L_3889677_SNP [dm6]	C	T	2.198e^-4	0.974	NON_SYNONYMOUS_CODING capu UTR_5_PRIME capu UPSTREAM capu INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_kn mE1_TFBS_ttk
2R	20108261	2R_20108261_SNP [dm3] 2R_24220738_SNP [dm6]	G	A	2.198e^-4	0.974	INTRON CG30419
X	14011638	X_14011638_SNP [dm3] X_14117605_SNP [dm6]	T	A	2.205e^-4	0.974	DOWNSTREAM tRNA:S7:12Eg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10619764	3R_10619764_SNP [dm3] 3R_14794042_SNP [dm6]	G	T	2.211e^-4	0.974	UTR_3_PRIME jvl DOWNSTREAM jvl INTRON jvl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12716419	2L_12716419_SNP [dm3] 2L_12716419_SNP [dm6]	C	G	2.223e^-4	0.974	NON_SYNONYMOUS_CODING CG5792 INTRON CG5792	TF binding site mE1_TFBS_sens
2R	15423869	2R_15423869_SNP [dm3] 2R_19536364_SNP [dm6]	A	C	2.233e^-4	0.974	INTRON sm	TF binding site BDTNP1_TFBS_twi
2R	5214887	2R_5214887_SNP [dm3] 2R_9327382_SNP [dm6]	A	G	2.233e^-4	0.974	INTRON CG13954 & 1 other
3L	6497592	3L_6497592_SNP [dm3] 3L_6504492_SNP [dm6]	T	C	2.236e^-4	0.974	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12799714	3R_12799714_SNP [dm3] 3R_16973992_SNP [dm6]	A	T	2.238e^-4	0.974	INTERGENIC
3R	2699663	3R_2699663_SNP [dm3] 3R_6873941_SNP [dm6]	T	A	2.256e^-4	0.974	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	21357214	3R_21357214_SNP [dm3] 3R_25531492_SNP [dm6]	T	C	2.257e^-4	0.974	INTRON msi
X	15495938	X_15495938_SNP [dm3] X_15601905_SNP [dm6]	T	C	2.268e^-4	0.974	INTERGENIC
X	17025893	X_17025893_SNP [dm3] X_17131860_SNP [dm6]	A	T	2.269e^-4	0.974	INTRON CG5004
3R	1522149	3R_1522149_SNP [dm3] 3R_5696427_SNP [dm6]	A	C	2.279e^-4	0.974	INTRON plx	TF binding site mE1_TFBS_cad
2R	11484632	2R_11484632_SNP [dm3] 2R_15597127_SNP [dm6]	G	A	2.281e^-4	0.974	INTERGENIC
3R	1522160	3R_1522160_SNP [dm3] 3R_5696438_SNP [dm6]	T	C	2.282e^-4	0.974	INTRON plx	TF binding site mE1_TFBS_cad
2L	9213383	2L_9213383_SNP [dm3] 2L_9213383_SNP [dm6]	A	T	2.282e^-4	0.974	INTRON tai
X	14846282	X_14846282_DEL [dm3] X_14952249_DEL [dm6]	ATATGTA	A	2.284e^-4	0.974	UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2816748	2L_2816748_SNP [dm3] 2L_2816748_SNP [dm6]	A	G	2.290e^-4	0.974	SYNONYMOUS_CODING Duox UPSTREAM CG15400	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9350924	2R_9350924_SNP [dm3] 2R_13463419_SNP [dm6]	C	G	2.309e^-4	0.974	INTRON arr
2R	12865792	2R_12865792_SNP [dm3] 2R_16978287_SNP [dm6]	G	A	2.311e^-4	0.974	INTRON Cbp53E
2L	4072363	2L_4072363_SNP [dm3] 2L_4072363_SNP [dm6]	T	G	2.311e^-4	0.974	INTRON ed
3L	8656906	3L_8656906_SNP [dm3] 3L_8663806_SNP [dm6]	C	A	2.311e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15754559	3L_15754559_SNP [dm3] 3L_15761459_SNP [dm6]	A	G	2.320e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13016392	2R_13016392_SNP [dm3] 2R_17128887_SNP [dm6]	A	G	2.323e^-4	0.974	NON_SYNONYMOUS_CODING Cda9
3R	26468386	3R_26468386_SNP [dm3] 3R_30642664_SNP [dm6]	A	G	2.326e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15458384	2L_15458384_SNP [dm3] 2L_15458384_SNP [dm6]	T	C	2.329e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18606780	2R_18606780_SNP [dm3] 2R_22719275_SNP [dm6]	C	T	2.334e^-4	0.974	NON_SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9566619	3L_9566619_SNP [dm3] 3L_9573519_SNP [dm6]	G	T	2.340e^-4	0.974	INTRON CG42673
3L	7868080	3L_7868080_SNP [dm3] 3L_7874980_SNP [dm6]	G	C	2.341e^-4	0.974	INTRON CG32365
3L	9053447	3L_9053447_SNP [dm3] 3L_9060347_SNP [dm6]	T	C	2.344e^-4	0.974	INTRON Argk
X	9328522	X_9328522_SNP [dm3] X_9434489_SNP [dm6]	A	C	2.358e^-4	0.974	INTRON mgl
3R	22947333	3R_22947333_INS [dm3] 3R_27121611_INS [dm6]	A	ATATAC	2.363e^-4	0.974	DOWNSTREAM CG6059 & 1 other INTERGENIC
X	8705562	X_8705562_SNP [dm3] X_8811529_SNP [dm6]	C	T	2.364e^-4	0.974	INTERGENIC
3L	12864515	3L_12864515_SNP [dm3] 3L_12871415_SNP [dm6]	C	A	2.372e^-4	0.974	INTERGENIC
2L	7339064	2L_7339064_INS [dm3] 2L_7339064_INS [dm6]	A	AT	2.377e^-4	0.974	INTRON Wnt6
3R	20619183	3R_20619183_SNP [dm3] 3R_24793461_SNP [dm6]	C	T	2.380e^-4	0.974	SYNONYMOUS_CODING Ets96B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4385538	X_4385538_SNP [dm3] X_4491505_SNP [dm6]	T	G	2.398e^-4	0.974	INTRON CR32773	TF binding site BDTNP1_TFBS_prd
2L	19113615	2L_19113615_SNP [dm3] 2L_19113615_SNP [dm6]	C	T	2.407e^-4	0.974	SYNONYMOUS_CODING amd UPSTREAM CG10561	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13184445	2R_13184445_SNP [dm3] 2R_17296940_SNP [dm6]	T	G	2.410e^-4	0.974	INTRON mbl
3L	18545623	3L_18545623_SNP [dm3] 3L_18552523_SNP [dm6]	T	A	2.413e^-4	0.974	INTERGENIC
2L	15749372	2L_15749372_SNP [dm3] 2L_15749372_SNP [dm6]	A	G	2.423e^-4	0.974	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
3L	9839151	3L_9839151_SNP [dm3] 3L_9846051_SNP [dm6]	G	A	2.425e^-4	0.974	INTRON RasGAP1	TF binding site BDTNP1_TFBS_dl
X	17025894	X_17025894_SNP [dm3] X_17131861_SNP [dm6]	C	G	2.436e^-4	0.974	INTRON CG5004
2L	182145	2L_182145_SNP [dm3] 2L_182145_SNP [dm6]	A	C	2.438e^-4	0.974	UPSTREAM spen INTRON spen
3L	8165217	3L_8165217_SNP [dm3] 3L_8172117_SNP [dm6]	C	T	2.438e^-4	0.974	SYNONYMOUS_CODING RecQ4	TF binding site BDTNP1_TFBS_twi
2R	14629828	2R_14629828_SNP [dm3] 2R_18742323_SNP [dm6]	G	A	2.443e^-4	0.974	UPSTREAM CR30121 DOWNSTREAM CG18609 INTRON Hs3st-A
3R	25463897	3R_25463897_SNP [dm3] 3R_29638175_SNP [dm6]	T	G	2.451e^-4	0.974	INTRON Dop1R2
3L	13976500	3L_13976500_SNP [dm3] 3L_13983400_SNP [dm6]	G	A	2.456e^-4	0.974	INTRON CG17364
3L	20870020	3L_20870020_SNP [dm3] 3L_20876920_SNP [dm6]	A	T	2.460e^-4	0.974	INTRON CG32432
2L	8503788	2L_8503788_SNP [dm3] 2L_8503788_SNP [dm6]	A	G	2.464e^-4	0.974	INTRON Dh31
2L	8503798	2L_8503798_SNP [dm3] 2L_8503798_SNP [dm6]	A	G	2.464e^-4	0.974	INTRON Dh31
3L	5320605	3L_5320605_SNP [dm3] 3L_5327505_SNP [dm6]	G	A	2.469e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12443179	2L_12443179_SNP [dm3] 2L_12443179_SNP [dm6]	G	A	2.469e^-4	0.974	SYNONYMOUS_CODING Oatp33Ea
2R	13785456	2R_13785456_SNP [dm3] 2R_17897951_SNP [dm6]	T	C	2.471e^-4	0.974	INTRON Elk	TF binding site BDTNP1_TFBS_twi
2R	13785457	2R_13785457_SNP [dm3] 2R_17897952_SNP [dm6]	A	G	2.471e^-4	0.974	INTRON Elk	TF binding site BDTNP1_TFBS_twi
2L	1312788	2L_1312788_SNP [dm3] 2L_1312788_SNP [dm6]	G	A	2.477e^-4	0.974	INTERGENIC
2R	17664116	2R_17664116_SNP [dm3] 2R_21776611_SNP [dm6]	A	G	2.483e^-4	0.974	INTERGENIC
2L	8503604	2L_8503604_SNP [dm3] 2L_8503604_SNP [dm6]	G	C	2.484e^-4	0.974	INTRON Dh31
2L	10014453	2L_10014453_SNP [dm3] 2L_10014453_SNP [dm6]	G	A	2.494e^-4	0.974	NON_SYNONYMOUS_CODING CG13131
2L	11618675	2L_11618675_SNP [dm3] 2L_11618675_SNP [dm6]	C	G	2.496e^-4	0.974	INTRON kek2
X	14882198	X_14882198_SNP [dm3] X_14988165_SNP [dm6]	T	C	2.501e^-4	0.974	INTRON eag	TF binding site BDTNP1_TFBS_dl
X	2904939	X_2904939_SNP [dm3] X_3010906_SNP [dm6]	T	C	2.504e^-4	0.974	INTRON kirre
3L	13229673	3L_13229673_SNP [dm3] 3L_13236573_SNP [dm6]	T	C	2.505e^-4	0.974	INTRON caps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	203030	2L_203030_SNP [dm3] 2L_203030_SNP [dm6]	G	A	2.510e^-4	0.974	UTR_3_PRIME spen UPSTREAM mRpL10
3R	2301528	3R_2301528_SNP [dm3] 3R_6475806_SNP [dm6]	A	G	2.518e^-4	0.974	INTERGENIC
3L	7611993	3L_7611993_SNP [dm3] 3L_7618893_SNP [dm6]	T	A	2.526e^-4	0.974	INTRON CG33275
3L	14953223	3L_14953223_SNP [dm3] 3L_14960123_SNP [dm6]	T	A	2.554e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18250399	2R_18250399_SNP [dm3] 2R_22362894_SNP [dm6]	A	T	2.555e^-4	0.974	INTRON Liprin-gamma
X	3231333	X_3231333_SNP [dm3] X_3337300_SNP [dm6]	C	G	2.559e^-4	0.974	SYNONYMOUS_CODING dnc INTRON CR44886
2L	14481111	2L_14481111_SNP [dm3] 2L_14481111_SNP [dm6]	G	A	2.561e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14070550	2R_14070550_SNP [dm3] 2R_18183045_SNP [dm6]	A	G	2.576e^-4	0.974	SYNONYMOUS_CODING CG5721 DOWNSTREAM nopo	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	9125501	2L_9125501_SNP [dm3] 2L_9125501_SNP [dm6]	T	C	2.593e^-4	0.974	UPSTREAM CG32982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Kr
2R	14370677	2R_14370677_SNP [dm3] 2R_18483172_SNP [dm6]	C	A	2.601e^-4	0.974	INTRON CG30116
X	11534543	X_11534543_SNP [dm3] X_11640510_SNP [dm6]	C	A	2.612e^-4	0.974	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl
2L	19917823	2L_19917823_SNP [dm3] 2L_19917823_SNP [dm6]	A	G	2.615e^-4	0.974	UPSTREAM sick INTRON sick	TF binding site mE1_TFBS_Trl
2L	8507887	2L_8507887_SNP [dm3] 2L_8507887_SNP [dm6]	G	T	2.622e^-4	0.974	INTERGENIC
X	12812405	X_12812405_INS [dm3] X_12918372_INS [dm6]	T	TG	2.627e^-4	0.974	INTRON fne
2R	12253096	2R_12253096_SNP [dm3] 2R_16365591_SNP [dm6]	T	A	2.638e^-4	0.974	UTR_5_PRIME CG15711	TF binding site BDTNP1_TFBS_twi
X	3737607	X_3737607_SNP [dm3] X_3843574_SNP [dm6]	T	C	2.642e^-4	0.974	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25369375	3R_25369375_SNP [dm3] 3R_29543653_SNP [dm6]	T	A	2.662e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	18611717	2R_18611717_SNP [dm3] 2R_22724212_SNP [dm6]	G	A	2.669e^-4	0.974	INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	6110473	2L_6110473_SNP [dm3] 2L_6110473_SNP [dm6]	A	G	2.671e^-4	0.974	INTRON stai
3L	16347360	3L_16347360_SNP [dm3] 3L_16354260_SNP [dm6]	G	A	2.674e^-4	0.974	NON_SYNONYMOUS_CODING Pdh UTR_5_PRIME Pdh DOWNSTREAM CG4933 & 1 other
X	12812423	X_12812423_SNP [dm3] X_12918390_SNP [dm6]	T	C	2.678e^-4	0.974	INTRON fne
2R	8148159	2R_8148159_SNP [dm3] 2R_12260654_SNP [dm6]	G	A	2.681e^-4	0.974	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	8507338	2L_8507338_SNP [dm3] 2L_8507338_SNP [dm6]	G	C	2.683e^-4	0.974	UPSTREAM Dh31 INTERGENIC
2R	11784437	2R_11784437_SNP [dm3] 2R_15896932_SNP [dm6]	C	A	2.687e^-4	0.974	UPSTREAM CG33463 INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19512850	2R_19512850_SNP [dm3] 2R_23625327_SNP [dm6]	G	T	2.688e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7112918	2L_7112918_SNP [dm3] 2L_7112918_SNP [dm6]	A	G	2.689e^-4	0.974	INTRON Pvf3	TF binding site BDTNP1_TFBS_twi
2R	10290267	2R_10290267_SNP [dm3] 2R_14402762_SNP [dm6]	T	C	2.690e^-4	0.974	INTERGENIC
3R	1522339	3R_1522339_SNP [dm3] 3R_5696617_SNP [dm6]	A	G	2.691e^-4	0.974	INTRON plx	TF binding site mE1_TFBS_cad
3L	7249899	3L_7249899_SNP [dm3] 3L_7256799_SNP [dm6]	T	C	2.700e^-4	0.974	INTRON CG14830
X	14418888	X_14418888_SNP [dm3] X_14524855_SNP [dm6]	T	G	2.708e^-4	0.974	INTERGENIC
2R	9122007	2R_9122007_SNP [dm3] 2R_13234502_SNP [dm6]	A	G	2.717e^-4	0.974	SYNONYMOUS_CODING CG4670	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26615087	3R_26615087_SNP [dm3] 3R_30789365_SNP [dm6]	A	G	2.720e^-4	0.974	DOWNSTREAM wts & 1 other INTERGENIC
2L	10082633	2L_10082633_SNP [dm3] 2L_10082633_SNP [dm6]	A	G	2.723e^-4	0.974	INTRON CG44153
2L	11001158	2L_11001158_SNP [dm3] 2L_11001158_SNP [dm6]	C	A	2.729e^-4	0.974	UPSTREAM lectin-33A & 1 other INTRON aub
3L	9986141	3L_9986141_SNP [dm3] 3L_9993041_SNP [dm6]	G	C	2.745e^-4	0.974	INTRON dpr6
2L	15052219	2L_15052219_SNP [dm3] 2L_15052219_SNP [dm6]	G	C	2.746e^-4	0.974	INTRON ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	21901836	3L_21901836_SNP [dm3] 3L_21908736_SNP [dm6]	A	T	2.748e^-4	0.974	INTRON mub
3L	8077974	3L_8077974_SNP [dm3] 3L_8084874_SNP [dm6]	C	T	2.752e^-4	0.974	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
2L	4422753	2L_4422753_SNP [dm3] 2L_4422753_SNP [dm6]	A	T	2.766e^-4	0.974	INTRON CG15431
3L	7249892	3L_7249892_SNP [dm3] 3L_7256792_SNP [dm6]	C	T	2.768e^-4	0.974	INTRON CG14830
X	5971161	X_5971161_SNP [dm3] X_6077128_SNP [dm6]	G	A	2.781e^-4	0.974	INTRON CG4666
3R	15177009	3R_15177009_SNP [dm3] 3R_19351287_SNP [dm6]	T	A	2.781e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5775101	3L_5775101_SNP [dm3] 3L_5782001_SNP [dm6]	T	C	2.785e^-4	0.974	SYNONYMOUS_CODING PGRP-LD UTR_3_PRIME Pmi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3373354	3R_3373354_SNP [dm3] 3R_7547632_SNP [dm6]	A	T	2.787e^-4	0.974	INTRON alpha-Est1
2R	18528113	2R_18528113_SNP [dm3] 2R_22640608_SNP [dm6]	T	A	2.789e^-4	0.974	UTR_3_PRIME RpS24 UPSTREAM CG3732	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	10096559	3R_10096559_SNP [dm3] 3R_14270837_SNP [dm6]	A	G	2.789e^-4	0.974	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13720092	2L_13720092_SNP [dm3] 2L_13720092_SNP [dm6]	A	G	2.796e^-4	0.974	INTERGENIC
3L	15944329	3L_15944329_SNP [dm3] 3L_15951229_SNP [dm6]	A	T	2.797e^-4	0.974	INTRON Pka-C3
2L	368824	2L_368824_SNP [dm3] 2L_368824_SNP [dm6]	C	T	2.802e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2690841	2R_2690841_SNP [dm3] 2R_6803336_SNP [dm6]	C	A	2.803e^-4	0.974	INTERGENIC
3R	21032482	3R_21032482_SNP [dm3] 3R_25206760_SNP [dm6]	G	A	2.808e^-4	0.974	INTRON CG13654 & 1 other
3R	21032489	3R_21032489_SNP [dm3] 3R_25206767_SNP [dm6]	A	G	2.808e^-4	0.974	INTRON CG13654 & 1 other
3L	8155332	3L_8155332_SNP [dm3] 3L_8162232_SNP [dm6]	C	T	2.810e^-4	0.974	INTRON CG13675	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18604788	2R_18604788_SNP [dm3] 2R_22717283_SNP [dm6]	C	T	2.815e^-4	0.974	DOWNSTREAM jbug & 1 other INTERGENIC
2R	14630330	2R_14630330_SNP [dm3] 2R_18742825_SNP [dm6]	A	G	2.816e^-4	0.974	SYNONYMOUS_CODING CG18609 DOWNSTREAM CG17821 INTRON Hs3st-A
3L	12066968	3L_12066968_SNP [dm3] 3L_12073868_SNP [dm6]	G	C	2.816e^-4	0.974	INTRON Sema-5c
3R	20936787	3R_20936787_SNP [dm3] 3R_25111065_SNP [dm6]	C	A	2.818e^-4	0.974	SPLICE_SITE_REGION CG13650 INTRON CG13650
2R	9532851	2R_9532851_SNP [dm3] 2R_13645346_SNP [dm6]	A	G	2.822e^-4	0.974	INTRON fas
3R	20618039	3R_20618039_SNP [dm3] 3R_24792317_SNP [dm6]	T	A	2.829e^-4	0.974	UPSTREAM Ets96B INTRON Ets96B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20442939	3R_20442939_SNP [dm3] 3R_24617217_SNP [dm6]	A	G	2.829e^-4	0.974	SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	10270903	3R_10270903_SNP [dm3] 3R_14445181_SNP [dm6]	C	T	2.842e^-4	0.974	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1694203	2L_1694203_INS [dm3] 2L_1694203_INS [dm6]	G	GTG	2.845e^-4	0.974	INTRON chinmo
3L	4951998	3L_4951998_SNP [dm3] 3L_4951998_SNP [dm6]	G	A	2.846e^-4	0.974	INTRON Con	TF binding site mE1_TFBS_chinmo
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	2.854e^-4	0.974	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2R	19194274	2R_19194274_SNP [dm3] 2R_23306751_SNP [dm6]	A	C	2.854e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15226047	2R_15226047_SNP [dm3] 2R_19338542_SNP [dm6]	C	T	2.856e^-4	0.974	INTRON Rgk1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11001177	2L_11001177_SNP [dm3] 2L_11001177_SNP [dm6]	G	A	2.869e^-4	0.974	UPSTREAM lectin-33A & 1 other INTRON aub
3L	6396476	3L_6396476_SNP [dm3] 3L_6403376_SNP [dm6]	T	C	2.899e^-4	0.974	INTRON CG42747
3R	20136892	3R_20136892_SNP [dm3] 3R_24311170_SNP [dm6]	C	G	2.900e^-4	0.974	SYNONYMOUS_CODING crb	TF binding site mE1_TFBS_cad
3L	12306925	3L_12306925_SNP [dm3] 3L_12313825_SNP [dm6]	G	A	2.900e^-4	0.974	INTERGENIC
X	13471400	X_13471400_SNP [dm3] X_13577367_SNP [dm6]	A	C	2.907e^-4	0.974	UTR_5_PRIME Tango13	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7105758	2L_7105758_SNP [dm3] 2L_7105758_SNP [dm6]	C	T	2.923e^-4	0.974	INTRON Pvf3
2L	7106314	2L_7106314_SNP [dm3] 2L_7106314_SNP [dm6]	A	C	2.923e^-4	0.974	INTRON Pvf3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16223523	2L_16223523_SNP [dm3] 2L_16223523_SNP [dm6]	T	C	2.936e^-4	0.974	INTERGENIC
3L	18321005	3L_18321005_SNP [dm3] 3L_18327905_SNP [dm6]	C	T	2.942e^-4	0.974	INTERGENIC
X	6481270	X_6481270_SNP [dm3] X_6587237_SNP [dm6]	C	T	2.947e^-4	0.974	INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9084761	2R_9084761_SNP [dm3] 2R_13197256_SNP [dm6]	A	T	2.947e^-4	0.974	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14854384	2L_14854384_SNP [dm3] 2L_14854384_SNP [dm6]	A	G	2.949e^-4	0.974	INTERGENIC
2L	5695699	2L_5695699_SNP [dm3] 2L_5695699_SNP [dm6]	A	G	2.953e^-4	0.974	INTERGENIC
2R	16369743	2R_16369743_SNP [dm3] 2R_20482238_SNP [dm6]	T	G	2.959e^-4	0.974	INTERGENIC
2R	19727808	2R_19727808_SNP [dm3] 2R_23840285_SNP [dm6]	T	C	2.962e^-4	0.974	UPSTREAM CR44805 & 1 other DOWNSTREAM CG5549 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6496102	3L_6496102_SNP [dm3] 3L_6503002_SNP [dm6]	C	G	2.984e^-4	0.974	INTRON sfl
3L	20138514	3L_20138514_SNP [dm3] 3L_20145414_SNP [dm6]	G	A	2.985e^-4	0.974	INTERGENIC
2L	1083669	2L_1083669_SNP [dm3] 2L_1083669_SNP [dm6]	A	G	2.988e^-4	0.974	UTR_3_PRIME Atg4a & 1 other DOWNSTREAM Atg4a
3R	12799715	3R_12799715_SNP [dm3] 3R_16973993_SNP [dm6]	C	G	2.988e^-4	0.974	INTERGENIC
2L	2407433	2L_2407433_SNP [dm3] 2L_2407433_SNP [dm6]	C	T	2.988e^-4	0.974	INTRON VGlut
3R	16647059	3R_16647059_SNP [dm3] 3R_20821337_SNP [dm6]	T	C	2.997e^-4	0.974	SYNONYMOUS_CODING CG17271 UPSTREAM RpS20	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	9084758	2R_9084758_INS [dm3] 2R_13197253_INS [dm6]	T	TT	3.001e^-4	0.974	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	2670431	3R_2670431_SNP [dm3] 3R_6844709_SNP [dm6]	G	A	3.002e^-4	0.974	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7107787	2L_7107787_SNP [dm3] 2L_7107787_SNP [dm6]	G	A	3.010e^-4	0.974	INTRON Pvf3
2L	3263189	2L_3263189_SNP [dm3] 2L_3263189_SNP [dm6]	T	C	3.010e^-4	0.974	DOWNSTREAM CR45706 INTERGENIC
2R	7462797	2R_7462797_SNP [dm3] 2R_11575292_SNP [dm6]	A	T	3.020e^-4	0.974	INTERGENIC
2R	12252908	2R_12252908_SNP [dm3] 2R_16365403_SNP [dm6]	A	G	3.022e^-4	0.974	UTR_5_PRIME CG15711	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11039144	3L_11039144_SNP [dm3] 3L_11046044_SNP [dm6]	T	C	3.023e^-4	0.974	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	3373372	3R_3373372_DEL [dm3] 3R_7547650_DEL [dm6]	AA	A	3.036e^-4	0.974	INTRON alpha-Est1
2L	3934838	2L_3934838_SNP [dm3] 2L_3934838_SNP [dm6]	G	C	3.041e^-4	0.974	INTRON fred
X	4359527	X_4359527_SNP [dm3] X_4465494_SNP [dm6]	G	C	3.049e^-4	0.974	INTRON bi & 1 other
X	11907158	X_11907158_SNP [dm3] X_12013125_SNP [dm6]	G	C	3.052e^-4	0.974	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9566611	3L_9566611_SNP [dm3] 3L_9573511_SNP [dm6]	A	C	3.063e^-4	0.974	INTRON CG42673
2L	1039938	2L_1039938_SNP [dm3] 2L_1039938_SNP [dm6]	C	T	3.067e^-4	0.974	INTRON IA-2	TF binding site mE1_TFBS_chinmo
3R	25902896	3R_25902896_SNP [dm3] 3R_30077174_SNP [dm6]	C	T	3.072e^-4	0.974	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	13184218	2R_13184218_SNP [dm3] 2R_17296713_SNP [dm6]	A	C	3.081e^-4	0.974	INTRON mbl
2L	3027804	2L_3027804_SNP [dm3] 2L_3027804_SNP [dm6]	C	T	3.094e^-4	0.974	SYNONYMOUS_CODING CG3605	TF binding site mE1_TFBS_sens
2R	1013465	2R_1013465_SNP [dm3] 2R_5125960_SNP [dm6]	T	A	3.097e^-4	0.974	INTRON gus	transposable element FlyBase
3R	26615235	3R_26615235_SNP [dm3] 3R_30789513_SNP [dm6]	G	A	3.118e^-4	0.974	DOWNSTREAM wts & 1 other INTERGENIC
2R	16140787	2R_16140787_SNP [dm3] 2R_20253282_SNP [dm6]	G	A	3.128e^-4	0.974	INTRON CG9864
X	4281567	X_4281567_SNP [dm3] X_4387534_SNP [dm6]	A	T	3.133e^-4	0.974	DOWNSTREAM CR32773 INTERGENIC	regulatory region REDfly_CRMs
2R	16062202	2R_16062202_DEL [dm3] 2R_20174697_DEL [dm6]	ACGATTCTTTCAGCTACCTT...	A	3.140e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6538674	2L_6538674_SNP [dm3] 2L_6538674_SNP [dm6]	T	G	3.141e^-4	0.974	INTRON eya
2R	12788320	2R_12788320_SNP [dm3] 2R_16900815_SNP [dm6]	A	C	3.145e^-4	0.974	INTRON inaC
3R	16653684	3R_16653684_SNP [dm3] 3R_20827962_SNP [dm6]	A	T	3.150e^-4	0.974	DOWNSTREAM CR44047 INTRON AdSS EXON CR44047	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25240360	3R_25240360_INS [dm3] 3R_29414638_INS [dm6]	C	CC	3.153e^-4	0.974	INTRON Ptp99A
2R	7533565	2R_7533565_SNP [dm3] 2R_11646060_SNP [dm6]	C	T	3.157e^-4	0.974	NON_SYNONYMOUS_CODING CG9003 UPSTREAM CG9003 INTRON CG9003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18545602	3L_18545602_INS [dm3] 3L_18552502_INS [dm6]	A	ACTAAACG	3.160e^-4	0.974	INTERGENIC
3L	5992567	3L_5992567_SNP [dm3] 3L_5999467_SNP [dm6]	C	A	3.160e^-4	0.974	INTRON PVRAP
3R	12673220	3R_12673220_SNP [dm3] 3R_16847498_SNP [dm6]	A	C	3.161e^-4	0.974	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	3917927	2L_3917927_SNP [dm3] 2L_3917927_SNP [dm6]	A	G	3.170e^-4	0.974	SYNONYMOUS_CODING fred	TF binding site mE1_TFBS_cad
2R	11545940	2R_11545940_SNP [dm3] 2R_15658435_SNP [dm6]	G	T	3.175e^-4	0.974	INTRON fus	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	6537654	X_6537654_SNP [dm3] X_6643621_SNP [dm6]	T	A	3.191e^-4	0.974	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1462107	2L_1462107_SNP [dm3] 2L_1462107_SNP [dm6]	C	A	3.194e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14953236	2R_14953236_SNP [dm3] 2R_19065731_SNP [dm6]	G	A	3.206e^-4	0.974	INTERGENIC
2L	15749595	2L_15749595_SNP [dm3] 2L_15749595_SNP [dm6]	A	T	3.216e^-4	0.974	UTR_3_PRIME l_2_35Di DOWNSTREAM l_2_35Di
2L	298795	2L_298795_SNP [dm3] 2L_298795_SNP [dm6]	C	A	3.217e^-4	0.974	INTRON Pi3K21B	TF binding site BDTNP1_TFBS_dl
2L	15052382	2L_15052382_DEL [dm3] 2L_15052382_DEL [dm6]	TTTC	T	3.222e^-4	0.974	INTRON ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sbb
2R	9708755	2R_9708755_SNP [dm3] 2R_13821250_SNP [dm6]	G	A	3.235e^-4	0.974	SYNONYMOUS_CODING fl_2_d	TF binding site mE1_TFBS_sens
2L	12697652	2L_12697652_SNP [dm3] 2L_12697652_SNP [dm6]	C	T	3.235e^-4	0.974	SYNONYMOUS_CODING PICK1 UPSTREAM CG5781	TF binding site mE1_TFBS_cad
3R	16649914	3R_16649914_SNP [dm3] 3R_20824192_SNP [dm6]	G	A	3.239e^-4	0.974	UTR_5_PRIME CG17272 DOWNSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7589883	3L_7589883_SNP [dm3] 3L_7596783_SNP [dm6]	A	T	3.245e^-4	0.974	UPSTREAM CG33275 INTRON CG33275
3L	8158558	3L_8158558_DEL [dm3] 3L_8165458_DEL [dm6]	GGGGCTCTG	G	3.248e^-4	0.974	UTR_5_PRIME CG13675
2L	7438475	2L_7438475_SNP [dm3] 2L_7438475_SNP [dm6]	T	A	3.250e^-4	0.974	INTRON CG5973	TF binding site BDTNP1_TFBS_dl
2L	1527433	2L_1527433_SNP [dm3] 2L_1527433_SNP [dm6]	T	C	3.265e^-4	0.974	INTERGENIC
2L	264124	2L_264124_SNP [dm3] 2L_264124_SNP [dm6]	C	G	3.273e^-4	0.974	NON_SYNONYMOUS_CODING CG17075 INTRON CG3645	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5902689	3L_5902689_SNP [dm3] 3L_5909589_SNP [dm6]	C	A	3.284e^-4	0.974	SYNONYMOUS_CODING CG13288
2R	12679790	2R_12679790_SNP [dm3] 2R_16792285_SNP [dm6]	T	A	3.286e^-4	0.974	UTR_3_PRIME CG5522 UPSTREAM CG15919 DOWNSTREAM CG5522 & 1 other
2R	9514655	2R_9514655_SNP [dm3] 2R_13627150_SNP [dm6]	C	A	3.287e^-4	0.974	INTRON fas
3R	27462970	3R_27462970_SNP [dm3] 3R_31637248_SNP [dm6]	G	A	3.293e^-4	0.974	INTRON kek6
2R	16078162	2R_16078162_SNP [dm3] 2R_20190657_SNP [dm6]	C	A	3.300e^-4	0.974	INTERGENIC
3L	9553166	3L_9553166_SNP [dm3] 3L_9560066_SNP [dm6]	A	G	3.301e^-4	0.974	INTRON CG42673
3R	16461819	3R_16461819_SNP [dm3] 3R_20636097_SNP [dm6]	T	C	3.304e^-4	0.974	UPSTREAM Lrrk INTRON Lrrk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	5320686	3L_5320686_INS [dm3] 3L_5327586_INS [dm6]	C	CA	3.309e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23884709	3R_23884709_SNP [dm3] 3R_28058987_SNP [dm6]	G	A	3.319e^-4	0.974	INTRON CG34362
2R	10751122	2R_10751122_SNP [dm3] 2R_14863617_SNP [dm6]	T	C	3.327e^-4	0.974	SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20325515	3R_20325515_SNP [dm3] 3R_24499793_SNP [dm6]	A	T	3.329e^-4	0.974	INTERGENIC
3L	8078005	3L_8078005_SNP [dm3] 3L_8084905_SNP [dm6]	T	C	3.332e^-4	0.974	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
2R	16342518	2R_16342518_SNP [dm3] 2R_20455013_SNP [dm6]	T	C	3.333e^-4	0.974	INTRON CG12484
3L	5876508	3L_5876508_SNP [dm3] 3L_5883408_SNP [dm6]	C	T	3.343e^-4	0.974	SYNONYMOUS_CODING CG13287	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3265253	X_3265253_SNP [dm3] X_3371220_SNP [dm6]	A	G	3.350e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	20032312	2L_20032312_SNP [dm3] 2L_20032312_SNP [dm6]	C	T	3.360e^-4	0.974	INTRON sNPF
3L	7932257	3L_7932257_SNP [dm3] 3L_7939157_SNP [dm6]	G	A	3.365e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6974989	3L_6974989_INS [dm3] 3L_6981889_INS [dm6]	A	ATA	3.368e^-4	0.974	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13722385	2L_13722385_SNP [dm3] 2L_13722385_SNP [dm6]	T	G	3.376e^-4	0.974	UTR_3_PRIME CG9014
2R	18603499	2R_18603499_SNP [dm3] 2R_22715994_SNP [dm6]	C	A	3.377e^-4	0.974	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi
2L	15458192	2L_15458192_SNP [dm3] 2L_15458192_SNP [dm6]	C	T	3.380e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15458391	2L_15458391_DEL [dm3] 2L_15458391_DEL [dm6]	TTCACCCGCATT...	T	3.380e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	2749555	3R_2749555_SNP [dm3] 3R_6923833_SNP [dm6]	A	C	3.382e^-4	0.974	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8226635	3R_8226635_SNP [dm3] 3R_12400913_SNP [dm6]	T	C	3.392e^-4	0.974	SYNONYMOUS_CODING lig3 INTRON CG34402	TF binding site mE1_TFBS_sens
3R	17916325	3R_17916325_SNP [dm3] 3R_22090603_SNP [dm6]	G	T	3.392e^-4	0.974	INTRON CG5778
X	14842821	X_14842821_SNP [dm3] X_14948788_SNP [dm6]	A	C	3.395e^-4	0.974	INTRON pdgy
2L	7432047	2L_7432047_SNP [dm3] 2L_7432047_SNP [dm6]	G	A	3.401e^-4	0.974	INTRON CG5958
2R	15929710	2R_15929710_SNP [dm3] 2R_20042205_SNP [dm6]	G	T	3.413e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16649836	3R_16649836_SNP [dm3] 3R_20824114_SNP [dm6]	G	T	3.413e^-4	0.974	UTR_5_PRIME CG17272 DOWNSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14161750	3L_14161750_SNP [dm3] 3L_14168650_SNP [dm6]	T	C	3.416e^-4	0.974	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8510992	2L_8510992_SNP [dm3] 2L_8510992_SNP [dm6]	G	T	3.428e^-4	0.974	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11907091	X_11907091_SNP [dm3] X_12013058_SNP [dm6]	T	C	3.440e^-4	0.974	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17163755	2R_17163755_SNP [dm3] 2R_21276250_SNP [dm6]	T	G	3.441e^-4	0.974	SYNONYMOUS_CODING Rgk3
2L	7465360	2L_7465360_SNP [dm3] 2L_7465360_SNP [dm6]	A	G	3.455e^-4	0.974	INTERGENIC
X	14858714	X_14858714_SNP [dm3] X_14964681_SNP [dm6]	A	T	3.458e^-4	0.974	INTRON eag
3R	26043754	3R_26043754_SNP [dm3] 3R_30218032_SNP [dm6]	A	C	3.462e^-4	0.974	INTERGENIC
3L	18689778	3L_18689778_SNP [dm3] 3L_18696678_SNP [dm6]	C	T	3.466e^-4	0.974	UTR_3_PRIME Dic4 DOWNSTREAM Dic4
2L	4631737	2L_4631737_SNP [dm3] 2L_4631737_SNP [dm6]	T	C	3.476e^-4	0.974	INTERGENIC
2L	9904055	2L_9904055_SNP [dm3] 2L_9904055_SNP [dm6]	G	C	3.481e^-4	0.974	SYNONYMOUS_CODING CG13124 UPSTREAM Muc30E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16137181	3R_16137181_SNP [dm3] 3R_20311459_SNP [dm6]	C	G	3.483e^-4	0.974	INTRON CG42668
3L	6433847	3L_6433847_SNP [dm3] 3L_6440747_SNP [dm6]	A	C	3.484e^-4	0.974	INTRON CG42747
3L	9785606	3L_9785606_SNP [dm3] 3L_9792506_SNP [dm6]	G	T	3.488e^-4	0.974	SYNONYMOUS_CODING Zasp67
3L	17591611	3L_17591611_SNP [dm3] 3L_17598511_SNP [dm6]	A	C	3.489e^-4	0.974	INTRON Eip74EF	TF binding site mE1_TFBS_cad
2L	15014648	2L_15014648_SNP [dm3] 2L_15014648_SNP [dm6]	T	A	3.493e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18614987	2R_18614987_SNP [dm3] 2R_22727482_SNP [dm6]	G	A	3.498e^-4	0.974	INTRON jbug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	9815037	3R_9815037_SNP [dm3] 3R_13989315_SNP [dm6]	G	T	3.499e^-4	0.974	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	17201737	3L_17201737_SNP [dm3] 3L_17208637_SNP [dm6]	T	A	3.507e^-4	0.974	INTRON Rbp6
2L	7440588	2L_7440588_SNP [dm3] 2L_7440588_SNP [dm6]	C	T	3.520e^-4	0.974	UPSTREAM CG5973 INTRON CG5973
X	11320410	X_11320410_SNP [dm3] X_11426377_SNP [dm6]	A	C	3.521e^-4	0.974	INTRON Gs2
2R	9342595	2R_9342595_SNP [dm3] 2R_13455090_SNP [dm6]	G	T	3.525e^-4	0.974	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_sens
3R	26060102	3R_26060102_SNP [dm3] 3R_30234380_SNP [dm6]	G	T	3.527e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8615551	3L_8615551_SNP [dm3] 3L_8622451_SNP [dm6]	G	T	3.539e^-4	0.974	SYNONYMOUS_CODING GAPsec DOWNSTREAM S-Lap2
2L	2399777	2L_2399777_SNP [dm3] 2L_2399777_SNP [dm6]	C	A	3.540e^-4	0.974	UPSTREAM VGlut INTRON VGlut
3R	16814302	3R_16814302_SNP [dm3] 3R_20988580_SNP [dm6]	C	T	3.545e^-4	0.974	UPSTREAM CG43446 & 1 other INTRON Calx
2R	15659499	2R_15659499_SNP [dm3] 2R_19771994_SNP [dm6]	G	A	3.546e^-4	0.974	UPSTREAM Or56a INTERGENIC
3R	21745800	3R_21745800_SNP [dm3] 3R_25920078_SNP [dm6]	T	C	3.549e^-4	0.974	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG14546
2R	12801955	2R_12801955_SNP [dm3] 2R_16914450_SNP [dm6]	A	G	3.549e^-4	0.974	INTERGENIC
2R	11972684	2R_11972684_SNP [dm3] 2R_16085179_SNP [dm6]	C	T	3.555e^-4	0.974	NON_SYNONYMOUS_CODING Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6426980	3L_6426980_DEL [dm3] 3L_6433880_DEL [dm6]	TT	T	3.561e^-4	0.974	INTRON CG42747
2L	12439113	2L_12439113_SNP [dm3] 2L_12439113_SNP [dm6]	C	T	3.590e^-4	0.974	SYNONYMOUS_CODING Elf
X	10078498	X_10078498_SNP [dm3] X_10184465_SNP [dm6]	A	G	3.591e^-4	0.974	INTRON CG43902 & 1 other
2L	19807370	2L_19807370_SNP [dm3] 2L_19807370_SNP [dm6]	C	A	3.599e^-4	0.974	UTR_5_PRIME sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8913562	X_8913562_SNP [dm3] X_9019529_SNP [dm6]	T	C	3.600e^-4	0.974	SYNONYMOUS_CODING rdgA INTRON CR43836
3L	10828724	3L_10828724_SNP [dm3] 3L_10835624_SNP [dm6]	C	A	3.603e^-4	0.974	INTERGENIC
3R	2325706	3R_2325706_SNP [dm3] 3R_6499984_SNP [dm6]	G	T	3.607e^-4	0.974	INTERGENIC
3L	9251831	3L_9251831_SNP [dm3] 3L_9258731_SNP [dm6]	C	T	3.608e^-4	0.974	INTRON GluRIB	TF binding site mE1_TFBS_HSA
3R	6477241	3R_6477241_SNP [dm3] 3R_10651519_SNP [dm6]	C	G	3.610e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	220686	2L_220686_SNP [dm3] 2L_220686_SNP [dm6]	C	T	3.626e^-4	0.974	DOWNSTREAM CR44220 INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	6478481	3R_6478481_SNP [dm3] 3R_10652759_SNP [dm6]	T	C	3.626e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6478485	3R_6478485_INS [dm3] 3R_10652763_INS [dm6]	A	GC	3.626e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	9592505	3L_9592505_SNP [dm3] 3L_9599405_SNP [dm6]	C	G	3.626e^-4	0.974	SYNONYMOUS_CODING CG3222	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1038445	2R_1038445_SNP [dm3] 2R_5150940_SNP [dm6]	C	A	3.627e^-4	0.974	INTRON Atf6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8354444	X_8354444_SNP [dm3] X_8460411_SNP [dm6]	C	T	3.629e^-4	0.974	INTRON CG15347	transposable element FlyBase
X	22150868	X_22150868_SNP [dm3] X_22749032_SNP [dm6]	C	G	3.630e^-4	0.974	INTRON CR44997
2L	6247128	2L_6247128_SNP [dm3] 2L_6247128_SNP [dm6]	T	G	3.633e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25622053	3R_25622053_SNP [dm3] 3R_29796331_SNP [dm6]	G	T	3.640e^-4	0.974	SYNONYMOUS_CODING CG7837 DOWNSTREAM sro	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20403125	2R_20403125_SNP [dm3] 2R_24515602_SNP [dm6]	C	T	3.643e^-4	0.974	UPSTREAM Ir60b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	2883787	3L_2883787_SNP [dm3] 3L_2883787_SNP [dm6]	G	C	3.650e^-4	0.974	UTR_3_PRIME spz5 DOWNSTREAM CR44531	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	23228187	3L_23228187_SNP [dm3] 3L_23235087_SNP [dm6]	A	T	3.653e^-4	0.974	INTRON nAChRalpha4
3R	22066994	3R_22066994_SNP [dm3] 3R_26241272_SNP [dm6]	C	T	3.658e^-4	0.974	INTRON CR42745
X	11345457	X_11345457_SNP [dm3] X_11451424_SNP [dm6]	T	A	3.677e^-4	0.974	INTRON Evi5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15458068	2L_15458068_SNP [dm3] 2L_15458068_SNP [dm6]	T	G	3.682e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	10935879	3L_10935879_SNP [dm3] 3L_10942779_SNP [dm6]	G	A	3.684e^-4	0.974	INTERGENIC
3L	11793876	3L_11793876_SNP [dm3] 3L_11800776_SNP [dm6]	C	A	3.688e^-4	0.974	UTR_5_PRIME CG10361 DOWNSTREAM tRNA:CR32093
X	11320385	X_11320385_SNP [dm3] X_11426352_SNP [dm6]	C	A	3.699e^-4	0.974	INTRON Gs2	TF binding site BDTNP1_TFBS_dl
3L	6428198	3L_6428198_SNP [dm3] 3L_6435098_SNP [dm6]	A	T	3.701e^-4	0.974	INTRON CG42747
3L	619507	3L_619507_SNP [dm3] 3L_619507_SNP [dm6]	T	C	3.712e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
2L	13669742	2L_13669742_SNP [dm3] 2L_13669742_SNP [dm6]	C	T	3.736e^-4	0.974	SYNONYMOUS_CODING CG18507 INTRON CG18507
2R	16924752	2R_16924752_SNP [dm3] 2R_21037247_SNP [dm6]	C	T	3.739e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	3.744e^-4	0.974	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9161576	3L_9161576_DEL [dm3] 3L_9168476_DEL [dm6]	TT	T	3.748e^-4	0.974	INTRON Rdl
3R	3219933	3R_3219933_DEL [dm3] 3R_7394211_DEL [dm6]	TC	T	3.753e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10919899	3L_10919899_SNP [dm3] 3L_10926799_SNP [dm6]	T	C	3.754e^-4	0.974	INTERGENIC
3R	25476753	3R_25476753_SNP [dm3] 3R_29651031_SNP [dm6]	T	A	3.762e^-4	0.974	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	3.767e^-4	0.974	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	3.771e^-4	0.974	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12755534	2R_12755534_SNP [dm3] 2R_16868029_SNP [dm6]	G	T	3.780e^-4	0.974	UPSTREAM Ef1beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	14859438	X_14859438_SNP [dm3] X_14965405_SNP [dm6]	G	T	3.780e^-4	0.974	INTRON eag
3L	5776084	3L_5776084_SNP [dm3] 3L_5782984_SNP [dm6]	A	G	3.781e^-4	0.974	NON_SYNONYMOUS_CODING PGRP-LD UTR_3_PRIME Pmi DOWNSTREAM Cralbp	TF binding site mE1_TFBS_cad
2R	15930230	2R_15930230_INS [dm3] 2R_20042725_INS [dm6]	C	CG	3.782e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	17837230	3L_17837230_SNP [dm3] 3L_17844130_SNP [dm6]	A	T	3.783e^-4	0.974	UTR_3_PRIME MED19 UPSTREAM CG5567
3R	2495069	3R_2495069_SNP [dm3] 3R_6669347_SNP [dm6]	A	T	3.789e^-4	0.974	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	10357482	3L_10357482_SNP [dm3] 3L_10364382_SNP [dm6]	G	A	3.804e^-4	0.974	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
2R	9493023	2R_9493023_SNP [dm3] 2R_13605518_SNP [dm6]	C	T	3.810e^-4	0.974	UTR_5_PRIME CG34236 UPSTREAM CG34236
2L	15750409	2L_15750409_SNP [dm3] 2L_15750409_SNP [dm6]	C	A	3.832e^-4	0.974	INTRON l_2_35Di	TF binding site BDTNP1_TFBS_dl
X	21475339	X_21475339_SNP [dm3] X_21604312_SNP [dm6]	C	A	3.851e^-4	0.974	INTRON CG14476	transposable element FlyBase
3L	9136367	3L_9136367_SNP [dm3] 3L_9143267_SNP [dm6]	C	T	3.851e^-4	0.974	UTR_3_PRIME nwk INTRON nwk
3R	25848192	3R_25848192_SNP [dm3] 3R_30022470_SNP [dm6]	T	A	3.883e^-4	0.974	SYNONYMOUS_CODING RpS28a UPSTREAM Axn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	7456999	3L_7456999_SNP [dm3] 3L_7463899_SNP [dm6]	A	G	3.885e^-4	0.974	INTERGENIC
2L	3528932	2L_3528932_SNP [dm3] 2L_3528932_SNP [dm6]	T	A	3.895e^-4	0.974	INTRON Spindly
2R	15927100	2R_15927100_SNP [dm3] 2R_20039595_SNP [dm6]	G	A	3.896e^-4	0.974	INTERGENIC
3R	11424928	3R_11424928_SNP [dm3] 3R_15599206_SNP [dm6]	A	C	3.898e^-4	0.974	INTERGENIC
2L	18580637	2L_18580637_SNP [dm3] 2L_18580637_SNP [dm6]	C	T	3.899e^-4	0.974	INTRON Pde11
2L	3931877	2L_3931877_SNP [dm3] 2L_3931877_SNP [dm6]	A	G	3.904e^-4	0.974	INTRON fred
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	3.904e^-4	0.974	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15757462	2L_15757462_SNP [dm3] 2L_15757462_SNP [dm6]	G	A	3.911e^-4	0.974	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11001157	2L_11001157_SNP [dm3] 2L_11001157_SNP [dm6]	A	T	3.912e^-4	0.974	UPSTREAM lectin-33A & 1 other INTRON aub
3L	10815127	3L_10815127_SNP [dm3] 3L_10822027_SNP [dm6]	A	T	3.916e^-4	0.974	INTERGENIC
2L	15458124	2L_15458124_SNP [dm3] 2L_15458124_SNP [dm6]	T	A	3.918e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	10290262	2R_10290262_SNP [dm3] 2R_14402757_SNP [dm6]	G	A	3.923e^-4	0.974	INTERGENIC
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	3.934e^-4	0.974	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16863695	3R_16863695_SNP [dm3] 3R_21037973_SNP [dm6]	G	A	3.935e^-4	0.974	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	11906910	X_11906910_SNP [dm3] X_12012877_SNP [dm6]	A	G	3.939e^-4	0.974	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5667938	2L_5667938_SNP [dm3] 2L_5667938_SNP [dm6]	C	T	3.941e^-4	0.974	INTRON Hsp60C
3L	11060505	3L_11060505_SNP [dm3] 3L_11067405_SNP [dm6]	T	G	3.945e^-4	0.974	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
3R	8161603	3R_8161603_SNP [dm3] 3R_12335881_SNP [dm6]	C	G	3.952e^-4	0.974	UPSTREAM CR44941 INTERGENIC
3L	11522576	3L_11522576_SNP [dm3] 3L_11529476_SNP [dm6]	T	G	3.963e^-4	0.974	INTRON Mob2
3R	15465391	3R_15465391_SNP [dm3] 3R_19639669_SNP [dm6]	A	G	3.964e^-4	0.974	INTRON subdued
3L	5259976	3L_5259976_SNP [dm3] 3L_5266876_SNP [dm6]	T	G	3.966e^-4	0.974	INTRON shep
2L	20706201	2L_20706201_SNP [dm3] 2L_20706201_SNP [dm6]	G	A	3.968e^-4	0.974	INTRON Hr38	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10357416	3L_10357416_SNP [dm3] 3L_10364316_SNP [dm6]	C	T	3.983e^-4	0.974	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
2L	8515035	2L_8515035_SNP [dm3] 2L_8515035_SNP [dm6]	G	T	3.985e^-4	0.974	UPSTREAM PIG-U & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	3430452	X_3430452_SNP [dm3] X_3536419_SNP [dm6]	G	A	3.989e^-4	0.974	INTRON CG32791
3R	14404587	3R_14404587_SNP [dm3] 3R_18578865_SNP [dm6]	C	G	3.998e^-4	0.974	INTRON fray & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5667932	2L_5667932_SNP [dm3] 2L_5667932_SNP [dm6]	C	A	4.005e^-4	0.974	INTRON Hsp60C
2L	8512024	2L_8512024_SNP [dm3] 2L_8512024_SNP [dm6]	T	G	4.011e^-4	0.974	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	2828927	2L_2828927_SNP [dm3] 2L_2828927_SNP [dm6]	A	G	4.012e^-4	0.974	INTRON Duox	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5695175	2L_5695175_SNP [dm3] 2L_5695175_SNP [dm6]	A	T	4.026e^-4	0.974	INTERGENIC
2L	14412843	2L_14412843_SNP [dm3] 2L_14412843_SNP [dm6]	C	T	4.034e^-4	0.974	INTERGENIC
3R	3458254	3R_3458254_SNP [dm3] 3R_7632532_SNP [dm6]	A	T	4.035e^-4	0.974	INTRON CG34127
3L	15755592	3L_15755592_SNP [dm3] 3L_15762492_SNP [dm6]	A	G	4.036e^-4	0.974	INTERGENIC
3L	15946806	3L_15946806_SNP [dm3] 3L_15953706_SNP [dm6]	A	T	4.052e^-4	0.974	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10935936	3L_10935936_SNP [dm3] 3L_10942836_SNP [dm6]	G	A	4.060e^-4	0.974	INTERGENIC
2L	1534480	2L_1534480_SNP [dm3] 2L_1534480_SNP [dm6]	G	A	4.062e^-4	0.974	INTERGENIC
2L	19894416	2L_19894416_SNP [dm3] 2L_19894416_SNP [dm6]	T	A	4.068e^-4	0.974	INTRON sick	silencer mE1_HDAC_PRE
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	4.074e^-4	0.974	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
3L	10192068	3L_10192068_SNP [dm3] 3L_10198968_SNP [dm6]	G	T	4.081e^-4	0.974	INTRON ect
2L	16183875	2L_16183875_INS [dm3] 2L_16183875_INS [dm6]	A	AC	4.100e^-4	0.974	INTRON Ca-alpha1D
3L	8895197	3L_8895197_SNP [dm3] 3L_8902097_SNP [dm6]	G	T	4.105e^-4	0.974	UPSTREAM TrpA1 INTRON TrpA1
X	11412733	X_11412733_SNP [dm3] X_11518700_SNP [dm6]	C	T	4.111e^-4	0.974	INTRON Drak
3L	7611992	3L_7611992_SNP [dm3] 3L_7618892_SNP [dm6]	T	A	4.115e^-4	0.974	INTRON CG33275
3R	4263909	3R_4263909_SNP [dm3] 3R_8438187_SNP [dm6]	T	A	4.117e^-4	0.974	INTRON CG45263
2L	6702213	2L_6702213_SNP [dm3] 2L_6702213_SNP [dm6]	C	T	4.123e^-4	0.974	INTRON Tsp
X	7941182	X_7941182_SNP [dm3] X_8047149_SNP [dm6]	T	A	4.123e^-4	0.974	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	6428366	3L_6428366_SNP [dm3] 3L_6435266_SNP [dm6]	A	G	4.131e^-4	0.974	INTRON CG42747	TF binding site mE1_TFBS_cad
3L	8067634	3L_8067634_SNP [dm3] 3L_8074534_SNP [dm6]	A	G	4.141e^-4	0.974	SYNONYMOUS_CODING Ect4 INTRON Ect4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20538590	3R_20538590_SNP [dm3] 3R_24712868_SNP [dm6]	C	T	4.153e^-4	0.974	UTR_5_PRIME CG13627
X	14861990	X_14861990_SNP [dm3] X_14967957_SNP [dm6]	G	C	4.166e^-4	0.974	INTRON eag
3L	5345592	3L_5345592_SNP [dm3] 3L_5352492_SNP [dm6]	T	G	4.170e^-4	0.974	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	1359945	3L_1359945_SNP [dm3] 3L_1359945_SNP [dm6]	C	G	4.185e^-4	0.974	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15052206	2L_15052206_SNP [dm3] 2L_15052206_SNP [dm6]	T	C	4.200e^-4	0.974	INTRON ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8716476	X_8716476_SNP [dm3] X_8822443_SNP [dm6]	A	C	4.203e^-4	0.974	INTERGENIC
2R	4569878	2R_4569878_SNP [dm3] 2R_8682373_SNP [dm6]	C	G	4.204e^-4	0.974	UTR_3_PRIME Acsl UPSTREAM tRNA:L2:44EF DOWNSTREAM Acsl
3R	22581319	3R_22581319_SNP [dm3] 3R_26755597_SNP [dm6]	T	C	4.207e^-4	0.974	INTERGENIC
3L	8226116	3L_8226116_SNP [dm3] 3L_8233016_SNP [dm6]	T	G	4.225e^-4	0.974	INTRON CG7213
3L	13165338	3L_13165338_SNP [dm3] 3L_13172238_SNP [dm6]	T	A	4.231e^-4	0.974	INTERGENIC
3L	9788347	3L_9788347_SNP [dm3] 3L_9795247_SNP [dm6]	T	C	4.233e^-4	0.974	INTRON Zasp67
3R	26110521	3R_26110521_SNP [dm3] 3R_30284799_SNP [dm6]	C	T	4.236e^-4	0.974	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	2967836	X_2967836_SNP [dm3] X_3073803_SNP [dm6]	G	A	4.238e^-4	0.974	INTRON kirre
X	11906926	X_11906926_SNP [dm3] X_12012893_SNP [dm6]	T	C	4.251e^-4	0.974	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18691141	3L_18691141_SNP [dm3] 3L_18698041_SNP [dm6]	A	T	4.253e^-4	0.974	INTRON Dic4
3R	2659979	3R_2659979_SNP [dm3] 3R_6834257_SNP [dm6]	T	A	4.254e^-4	0.974	INTRON Scr	regulatory region REDfly_CRMs
2L	20767789	2L_20767789_SNP [dm3] 2L_20767789_SNP [dm6]	G	T	4.264e^-4	0.974	UTR_3_PRIME dia DOWNSTREAM dia	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9142581	3L_9142581_SNP [dm3] 3L_9149481_SNP [dm6]	G	T	4.268e^-4	0.974	UTR_3_PRIME Rdl
2R	19798724	2R_19798724_SNP [dm3] 2R_23911201_SNP [dm6]	T	A	4.277e^-4	0.974	INTRON kcc
3L	7726547	3L_7726547_SNP [dm3] 3L_7733447_SNP [dm6]	A	T	4.281e^-4	0.974	UTR_3_PRIME Snmp2 INTRON CG32373
3R	2405360	3R_2405360_SNP [dm3] 3R_6579638_SNP [dm6]	A	G	4.283e^-4	0.974	INTRON dpr11
X	8204861	X_8204861_SNP [dm3] X_8310828_SNP [dm6]	A	G	4.289e^-4	0.974	INTRON nAChRalpha3
2L	12875210	2L_12875210_DEL [dm3] 2L_12875210_DEL [dm6]	TACCCCAA	T	4.290e^-4	0.974	INTERGENIC
3L	9136363	3L_9136363_SNP [dm3] 3L_9143263_SNP [dm6]	A	C	4.290e^-4	0.974	UTR_3_PRIME nwk INTRON nwk
3L	14161749	3L_14161749_SNP [dm3] 3L_14168649_SNP [dm6]	G	C	4.292e^-4	0.974	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	14858726	X_14858726_SNP [dm3] X_14964693_SNP [dm6]	C	T	4.295e^-4	0.974	INTRON eag
3L	8151198	3L_8151198_SNP [dm3] 3L_8158098_SNP [dm6]	G	A	4.298e^-4	0.974	INTRON CG42445
2L	2398396	2L_2398396_SNP [dm3] 2L_2398396_SNP [dm6]	G	A	4.321e^-4	0.974	INTRON VGlut
2L	8523117	2L_8523117_SNP [dm3] 2L_8523117_SNP [dm6]	A	G	4.330e^-4	0.974	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	20134738	2L_20134738_SNP [dm3] 2L_20134738_SNP [dm6]	A	G	4.335e^-4	0.974	INTRON CG10651
2L	10345624	2L_10345624_SNP [dm3] 2L_10345624_SNP [dm6]	G	T	4.338e^-4	0.974	INTRON CG5022
2L	20143771	2L_20143771_SNP [dm3] 2L_20143771_SNP [dm6]	T	C	4.341e^-4	0.974	INTERGENIC
X	14473309	X_14473309_SNP [dm3] X_14579276_SNP [dm6]	T	C	4.342e^-4	0.974	INTERGENIC
2L	1157378	2L_1157378_SNP [dm3] 2L_1157378_SNP [dm6]	G	A	4.345e^-4	0.974	INTRON capt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	4949940	2R_4949940_SNP [dm3] 2R_9062435_SNP [dm6]	C	A	4.346e^-4	0.974	UTR_5_PRIME ana UPSTREAM CG8197	regulatory region REDfly_CRMs
3L	8943961	3L_8943961_SNP [dm3] 3L_8950861_SNP [dm6]	G	A	4.346e^-4	0.974	INTRON orb2 & 1 other
X	11907047	X_11907047_SNP [dm3] X_12013014_SNP [dm6]	G	T	4.350e^-4	0.974	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18961664	2R_18961664_SNP [dm3] 2R_23074141_SNP [dm6]	G	A	4.354e^-4	0.974	SYNONYMOUS_CODING Fib UPSTREAM CG3085 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15458278	2L_15458278_SNP [dm3] 2L_15458278_SNP [dm6]	T	A	4.356e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	3798728	2R_3798728_SNP [dm3] 2R_7911223_SNP [dm6]	T	C	4.358e^-4	0.974	INTRON CG30377
3L	7961235	3L_7961235_SNP [dm3] 3L_7968135_SNP [dm6]	G	A	4.358e^-4	0.974	INTERGENIC
3R	2453095	3R_2453095_INS [dm3] 3R_6627373_INS [dm6]	C	CATCC	4.363e^-4	0.974	DOWNSTREAM CG15177 INTRON sowi
3L	5775619	3L_5775619_SNP [dm3] 3L_5782519_SNP [dm6]	T	G	4.381e^-4	0.974	DOWNSTREAM Cralbp INTRON Pmi & 1 other
3L	8875147	3L_8875147_SNP [dm3] 3L_8882047_SNP [dm6]	A	C	4.388e^-4	0.974	INTRON dally
2L	9753430	2L_9753430_SNP [dm3] 2L_9753430_SNP [dm6]	G	A	4.394e^-4	0.974	INTERGENIC
2L	15765416	2L_15765416_SNP [dm3] 2L_15765416_SNP [dm6]	C	T	4.399e^-4	0.974	SYNONYMOUS_CODING CG3793 DOWNSTREAM wek	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9843986	3L_9843986_SNP [dm3] 3L_9850886_SNP [dm6]	T	A	4.407e^-4	0.974	INTRON RasGAP1	TF binding site mE1_TFBS_cad
3L	8155638	3L_8155638_SNP [dm3] 3L_8162538_SNP [dm6]	A	G	4.408e^-4	0.974	INTRON CG13675
2R	16455993	2R_16455993_SNP [dm3] 2R_20568488_SNP [dm6]	T	C	4.414e^-4	0.974	INTRON qsm	TF binding site mE1_TFBS_chinmo
2L	8512136	2L_8512136_INS [dm3] 2L_8512136_INS [dm6]	A	AAAACATTAACATATTAACT...	4.423e^-4	0.974	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	14565618	2R_14565618_DEL [dm3] 2R_18678113_DEL [dm6]	GC	G	4.429e^-4	0.974	DOWNSTREAM CG44434 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	18321003	3L_18321003_INS [dm3] 3L_18327903_INS [dm6]	C	CC	4.432e^-4	0.974	INTERGENIC
2L	8034895	2L_8034895_SNP [dm3] 2L_8034895_SNP [dm6]	A	C	4.433e^-4	0.974	INTRON CG7367 & 1 other
3R	10050590	3R_10050590_SNP [dm3] 3R_14224868_SNP [dm6]	C	G	4.436e^-4	0.974	UPSTREAM Sp212 DOWNSTREAM CG9631 INTERGENIC
3R	10619899	3R_10619899_INS [dm3] 3R_14794177_INS [dm6]	A	ACGAAAT	4.441e^-4	0.974	UTR_3_PRIME jvl DOWNSTREAM jvl INTRON jvl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10619900	3R_10619900_DEL [dm3] 3R_14794178_DEL [dm6]	GTGATTTA	G	4.441e^-4	0.974	UTR_3_PRIME jvl DOWNSTREAM jvl INTRON jvl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8073156	3L_8073156_SNP [dm3] 3L_8080056_SNP [dm6]	A	T	4.467e^-4	0.974	INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	9142650	3L_9142650_SNP [dm3] 3L_9149550_SNP [dm6]	A	T	4.474e^-4	0.974	UTR_3_PRIME Rdl
2R	13785423	2R_13785423_SNP [dm3] 2R_17897918_SNP [dm6]	G	A	4.477e^-4	0.974	INTRON Elk	TF binding site BDTNP1_TFBS_twi
3L	4107654	3L_4107654_SNP [dm3] 3L_4107654_SNP [dm6]	C	A	4.480e^-4	0.974	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7961059	3L_7961059_SNP [dm3] 3L_7967959_SNP [dm6]	G	A	4.480e^-4	0.974	INTERGENIC
3L	8412377	3L_8412377_SNP [dm3] 3L_8419277_SNP [dm6]	C	T	4.484e^-4	0.974	INTRON CG32354
X	13988861	X_13988861_SNP [dm3] X_14094828_SNP [dm6]	C	A	4.492e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	14767905	2R_14767905_SNP [dm3] 2R_18880400_SNP [dm6]	T	A	4.497e^-4	0.974	INTRON sano
2L	19922901	2L_19922901_SNP [dm3] 2L_19922901_SNP [dm6]	A	C	4.498e^-4	0.974	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
3L	13256619	3L_13256619_INS [dm3] 3L_13263519_INS [dm6]	C	CC	4.499e^-4	0.974	INTRON caps	enhancer mE1_CBP_Enhancers
3R	23848890	3R_23848890_SNP [dm3] 3R_28023168_SNP [dm6]	G	A	4.500e^-4	0.974	INTERGENIC
2R	15930459	2R_15930459_SNP [dm3] 2R_20042954_SNP [dm6]	G	T	4.500e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	15279469	2L_15279469_SNP [dm3] 2L_15279469_SNP [dm6]	C	T	4.524e^-4	0.974	UPSTREAM CR45349 EXON CR43682
X	4300225	X_4300225_SNP [dm3] X_4406192_SNP [dm6]	T	C	4.531e^-4	0.974	INTRON CR32773	TF binding site mE1_TFBS_chinmo
X	14853584	X_14853584_SNP [dm3] X_14959551_SNP [dm6]	T	C	4.531e^-4	0.974	INTRON eag	TF binding site mE1_TFBS_bab1
3L	9305867	3L_9305867_SNP [dm3] 3L_9312767_SNP [dm6]	T	G	4.532e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	4.534e^-4	0.974	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	13971710	X_13971710_INS [dm3] X_14077677_INS [dm6]	T	TT	4.541e^-4	0.974	INTERGENIC
3R	25428641	3R_25428641_SNP [dm3] 3R_29602919_SNP [dm6]	T	A	4.543e^-4	0.974	INTRON alph
2L	12881673	2L_12881673_SNP [dm3] 2L_12881673_SNP [dm6]	G	A	4.549e^-4	0.974	INTERGENIC
2R	12543418	2R_12543418_SNP [dm3] 2R_16655913_SNP [dm6]	G	A	4.559e^-4	0.974	SYNONYMOUS_CODING Picot UPSTREAM Nach	TF binding site mE1_TFBS_cad
X	14854409	X_14854409_SNP [dm3] X_14960376_SNP [dm6]	A	C	4.560e^-4	0.974	INTRON eag	TF binding site mE1_TFBS_bab1
2L	15014712	2L_15014712_SNP [dm3] 2L_15014712_SNP [dm6]	A	C	4.562e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12413023	3L_12413023_SNP [dm3] 3L_12419923_SNP [dm6]	G	A	4.569e^-4	0.974	INTERGENIC
2L	3932088	2L_3932088_SNP [dm3] 2L_3932088_SNP [dm6]	A	T	4.570e^-4	0.974	INTRON fred
2L	10719689	2L_10719689_DEL [dm3] 2L_10719689_DEL [dm6]	AAAT	A	4.575e^-4	0.974	INTERGENIC
2L	10301425	2L_10301425_SNP [dm3] 2L_10301425_SNP [dm6]	A	G	4.575e^-4	0.974	SYNONYMOUS_CODING CG13138 DOWNSTREAM nmd	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6396597	3L_6396597_SNP [dm3] 3L_6403497_SNP [dm6]	G	T	4.589e^-4	0.974	INTRON CG42747
X	14418944	X_14418944_DEL [dm3] X_14524911_DEL [dm6]	AACTA	A	4.593e^-4	0.974	INTERGENIC
2L	347496	2L_347496_SNP [dm3] 2L_347496_SNP [dm6]	T	A	4.593e^-4	0.974	UTR_3_PRIME Plc21C DOWNSTREAM Plc21C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6396976	3L_6396976_SNP [dm3] 3L_6403876_SNP [dm6]	G	A	4.604e^-4	0.974	INTRON CG42747
2L	1908838	2L_1908838_SNP [dm3] 2L_1908838_SNP [dm6]	T	A	4.607e^-4	0.974	INTRON CG7337
2L	7431916	2L_7431916_SNP [dm3] 2L_7431916_SNP [dm6]	T	C	4.608e^-4	0.974	INTRON CG5958
2L	15014658	2L_15014658_SNP [dm3] 2L_15014658_SNP [dm6]	T	C	4.614e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18395939	3L_18395939_SNP [dm3] 3L_18402839_SNP [dm6]	T	C	4.618e^-4	0.974	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19922892	2L_19922892_SNP [dm3] 2L_19922892_SNP [dm6]	C	G	4.624e^-4	0.974	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
2R	9508664	2R_9508664_SNP [dm3] 2R_13621159_SNP [dm6]	G	A	4.627e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	9542944	2R_9542944_SNP [dm3] 2R_13655439_SNP [dm6]	T	G	4.641e^-4	0.974	INTRON fas
2L	1039043	2L_1039043_SNP [dm3] 2L_1039043_SNP [dm6]	G	A	4.657e^-4	0.974	DOWNSTREAM CG4415 INTRON IA-2	TF binding site mE1_TFBS_chinmo
2L	9541221	2L_9541221_SNP [dm3] 2L_9541221_SNP [dm6]	G	A	4.658e^-4	0.974	SYNONYMOUS_CODING CG17855
2R	19798715	2R_19798715_SNP [dm3] 2R_23911192_SNP [dm6]	T	C	4.662e^-4	0.974	INTRON kcc
2L	946545	2L_946545_SNP [dm3] 2L_946545_SNP [dm6]	C	A	4.665e^-4	0.974	INTRON CG4341
2L	8515600	2L_8515600_SNP [dm3] 2L_8515600_SNP [dm6]	T	C	4.674e^-4	0.974	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12091206	3L_12091206_SNP [dm3] 3L_12098106_SNP [dm6]	G	T	4.684e^-4	0.974	INTERGENIC
X	13444507	X_13444507_SNP [dm3] X_13550474_SNP [dm6]	A	G	4.686e^-4	0.974	INTERGENIC
2R	618059	2R_618059_SNP [dm3] 2R_4730554_SNP [dm6]	G	A	4.689e^-4	0.974	UPSTREAM CR41440 EXON CR40282 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	8529702	3L_8529702_SNP [dm3] 3L_8536602_SNP [dm6]	C	G	4.689e^-4	0.974	SYNONYMOUS_CODING ergic53	TF binding site mE1_TFBS_cad
3L	8545978	3L_8545978_SNP [dm3] 3L_8552878_SNP [dm6]	G	T	4.689e^-4	0.974	INTRON rhea
2R	1142872	2R_1142872_DEL [dm3] 2R_5255367_DEL [dm6]	ATTGACTATTAAAATGAATT...	A	4.712e^-4	0.974	DOWNSTREAM CR41443 INTERGENIC
3R	19015499	3R_19015499_SNP [dm3] 3R_23189777_SNP [dm6]	G	T	4.715e^-4	0.974	UPSTREAM cnc INTRON cnc	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	8542815	2L_8542815_SNP [dm3] 2L_8542815_SNP [dm6]	G	A	4.720e^-4	0.974	UPSTREAM Sema-1a DOWNSTREAM tRNA:CR31603 INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22758941	3R_22758941_SNP [dm3] 3R_26933219_SNP [dm6]	G	A	4.747e^-4	0.974	INTRON sda
3L	12722068	3L_12722068_SNP [dm3] 3L_12728968_SNP [dm6]	C	T	4.749e^-4	0.974	INTERGENIC
X	19395392	X_19395392_DEL [dm3] X_19501359_DEL [dm6]	TT	T	4.752e^-4	0.974	INTRON Pfrx & 1 other
X	15665189	X_15665189_SNP [dm3] X_15771156_SNP [dm6]	C	T	4.760e^-4	0.974	SYNONYMOUS_CODING CG33172	TF binding site mE1_TFBS_sens
2R	15261480	2R_15261480_SNP [dm3] 2R_19373975_SNP [dm6]	A	T	4.764e^-4	0.974	UPSTREAM CG9416 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	5241588	3L_5241588_SNP [dm3] 3L_5248488_SNP [dm6]	A	G	4.768e^-4	0.974	UPSTREAM shep INTRON shep
2R	13184198	2R_13184198_SNP [dm3] 2R_17296693_SNP [dm6]	C	T	4.770e^-4	0.974	INTRON mbl
3L	18269337	3L_18269337_SNP [dm3] 3L_18276237_SNP [dm6]	A	G	4.774e^-4	0.974	INTERGENIC
2L	21727956	2L_21727956_SNP [dm3] 2L_21727956_SNP [dm6]	T	A	4.786e^-4	0.974	INTRON CG31619
X	9949268	X_9949268_SNP [dm3] X_10055235_SNP [dm6]	A	T	4.793e^-4	0.974	SYNONYMOUS_CODING Yp1 UPSTREAM CR45601 DOWNSTREAM CG15312
3R	19897774	3R_19897774_SNP [dm3] 3R_24072052_SNP [dm6]	C	T	4.796e^-4	0.974	INTRON 4EHP
2L	15886966	2L_15886966_SNP [dm3] 2L_15886966_SNP [dm6]	G	T	4.798e^-4	0.974	UPSTREAM CR31824 INTERGENIC
3L	10829021	3L_10829021_SNP [dm3] 3L_10835921_SNP [dm6]	A	T	4.802e^-4	0.974	INTERGENIC
3R	16650128	3R_16650128_SNP [dm3] 3R_20824406_SNP [dm6]	G	A	4.806e^-4	0.974	UPSTREAM CG17272 DOWNSTREAM AdSS INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16370589	2R_16370589_SNP [dm3] 2R_20483084_SNP [dm6]	G	T	4.811e^-4	0.974	INTERGENIC
X	7483640	X_7483640_DEL [dm3] X_7589607_DEL [dm6]	GGGTTGAG	G	4.812e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs
2R	19798726	2R_19798726_SNP [dm3] 2R_23911203_SNP [dm6]	C	T	4.815e^-4	0.974	INTRON kcc
3L	9771726	3L_9771726_SNP [dm3] 3L_9778626_SNP [dm6]	G	A	4.815e^-4	0.974	INTRON CG8177	TF binding site mE1_TFBS_inv
3R	19178922	3R_19178922_SNP [dm3] 3R_23353200_SNP [dm6]	T	G	4.818e^-4	0.974	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9510440	2R_9510440_SNP [dm3] 2R_13622935_SNP [dm6]	T	C	4.830e^-4	0.974	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	12478968	2L_12478968_SNP [dm3] 2L_12478968_SNP [dm6]	C	T	4.834e^-4	0.974	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19197491	2R_19197491_SNP [dm3] 2R_23309968_SNP [dm6]	T	C	4.839e^-4	0.974	UPSTREAM Prosbeta5R1 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4874255	2L_4874255_SNP [dm3] 2L_4874255_SNP [dm6]	G	A	4.840e^-4	0.974	UTR_3_PRIME pog INTRON pog
3L	18269228	3L_18269228_DEL [dm3] 3L_18276128_DEL [dm6]	CAACATTTTAATAAAAATGA...	C	4.842e^-4	0.974	INTERGENIC
3L	619511	3L_619511_SNP [dm3] 3L_619511_SNP [dm6]	T	C	4.846e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
3R	14008461	3R_14008461_SNP [dm3] 3R_18182739_SNP [dm6]	A	C	4.858e^-4	0.974	SYNONYMOUS_CODING cdm DOWNSTREAM CG7208	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10719619	2L_10719619_SNP [dm3] 2L_10719619_SNP [dm6]	A	G	4.859e^-4	0.974	INTERGENIC
2L	10719670	2L_10719670_DEL [dm3] 2L_10719670_DEL [dm6]	TT	T	4.859e^-4	0.974	INTERGENIC
2R	12876698	2R_12876698_SNP [dm3] 2R_16989193_SNP [dm6]	T	A	4.863e^-4	0.974	INTRON Cbp53E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13184183	2R_13184183_SNP [dm3] 2R_17296678_SNP [dm6]	A	G	4.866e^-4	0.974	INTRON mbl
3L	10935880	3L_10935880_SNP [dm3] 3L_10942780_SNP [dm6]	A	C	4.869e^-4	0.974	INTERGENIC
2L	16843924	2L_16843924_SNP [dm3] 2L_16843924_SNP [dm6]	A	G	4.881e^-4	0.974	SYNONYMOUS_CODING CG13284
2L	8503802	2L_8503802_SNP [dm3] 2L_8503802_SNP [dm6]	A	T	4.888e^-4	0.974	INTRON Dh31
2L	15458230	2L_15458230_SNP [dm3] 2L_15458230_SNP [dm6]	G	C	4.892e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	2861071	3R_2861071_SNP [dm3] 3R_7035349_SNP [dm6]	T	C	4.892e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7599918	3L_7599918_SNP [dm3] 3L_7606818_SNP [dm6]	G	T	4.906e^-4	0.974	INTRON CG33275
2R	11156104	2R_11156104_SNP [dm3] 2R_15268599_SNP [dm6]	T	G	4.910e^-4	0.974	INTRON Trpm
2L	11852990	2L_11852990_SNP [dm3] 2L_11852990_SNP [dm6]	G	A	4.912e^-4	0.974	UPSTREAM CG42751 DOWNSTREAM Mal-B2 INTRON Pde1c
3L	8875144	3L_8875144_SNP [dm3] 3L_8882044_SNP [dm6]	C	A	4.914e^-4	0.974	INTRON dally
3L	17393227	3L_17393227_SNP [dm3] 3L_17400127_SNP [dm6]	A	G	4.920e^-4	0.974	DOWNSTREAM noe INTRON blot
3L	17393233	3L_17393233_SNP [dm3] 3L_17400133_SNP [dm6]	T	C	4.920e^-4	0.974	DOWNSTREAM noe INTRON blot
2L	14855888	2L_14855888_SNP [dm3] 2L_14855888_SNP [dm6]	A	C	4.920e^-4	0.974	INTERGENIC
2L	1528253	2L_1528253_SNP [dm3] 2L_1528253_SNP [dm6]	G	A	4.924e^-4	0.974	INTERGENIC
2L	8512119	2L_8512119_INS [dm3] 2L_8512119_INS [dm6]	T	TATTAGTAGAGACAGAC...	4.926e^-4	0.974	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	27052080	3R_27052080_SNP [dm3] 3R_31226358_SNP [dm6]	C	T	4.927e^-4	0.974	SPLICE_SITE_REGION CG12054 INTRON CG12054	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9988932	3L_9988932_SNP [dm3] 3L_9995832_SNP [dm6]	G	A	4.928e^-4	0.974	INTRON dpr6
3L	14332248	3L_14332248_SNP [dm3] 3L_14339148_SNP [dm6]	C	T	4.933e^-4	0.974	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12715161	3L_12715161_DEL [dm3] 3L_12722061_DEL [dm6]	GTGGG	G	4.966e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14060788	X_14060788_SNP [dm3] X_14166755_SNP [dm6]	T	G	4.978e^-4	0.974	INTERGENIC
X	22153168	X_22153168_SNP [dm3] X_22751332_SNP [dm6]	T	A	4.987e^-4	0.974	INTRON CR44997	TF binding site BDTNP1_TFBS_twi
2R	2420429	2R_2420429_SNP [dm3] 2R_6532924_SNP [dm6]	C	G	4.991e^-4	0.974	INTRON jing EXON CR43905	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14486560	3R_14486560_SNP [dm3] 3R_18660838_SNP [dm6]	C	T	4.992e^-4	0.974	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	12697942	2L_12697942_SNP [dm3] 2L_12697942_SNP [dm6]	T	C	4.996e^-4	0.974	SYNONYMOUS_CODING PICK1 UPSTREAM CG5781 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18984620	3L_18984620_SNP [dm3] 3L_18991520_SNP [dm6]	T	C	5.024e^-4	0.974	SYNONYMOUS_CODING CG18135	TF binding site mE1_TFBS_cad
3R	1665799	3R_1665799_SNP [dm3] 3R_5840077_SNP [dm6]	T	A	5.026e^-4	0.974	INTERGENIC
3R	25775634	3R_25775634_SNP [dm3] 3R_29949912_SNP [dm6]	A	T	5.049e^-4	0.974	DOWNSTREAM TkR99D INTERGENIC
3L	4811517	3L_4811517_SNP [dm3] 3L_4811517_SNP [dm6]	G	A	5.050e^-4	0.974	INTRON Dhc64C
2R	14366751	2R_14366751_SNP [dm3] 2R_18479246_SNP [dm6]	A	C	5.056e^-4	0.974	INTRON CG30116
3R	21252092	3R_21252092_SNP [dm3] 3R_25426370_SNP [dm6]	T	G	5.069e^-4	0.974	INTRON Fur1
2L	10719624	2L_10719624_SNP [dm3] 2L_10719624_SNP [dm6]	G	A	5.072e^-4	0.974	INTERGENIC
2R	18614338	2R_18614338_SNP [dm3] 2R_22726833_SNP [dm6]	C	T	5.089e^-4	0.974	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	12381944	3L_12381944_SNP [dm3] 3L_12388844_SNP [dm6]	C	A	5.090e^-4	0.974	UPSTREAM Ncc69 INTRON Ncc69
X	2963055	X_2963055_SNP [dm3] X_3069022_SNP [dm6]	C	A	5.092e^-4	0.974	INTRON kirre
2R	14070367	2R_14070367_SNP [dm3] 2R_18182862_SNP [dm6]	A	C	5.096e^-4	0.974	SYNONYMOUS_CODING CG5721 DOWNSTREAM nopo	TF binding site mE1_TFBS_chinmo
3R	26615221	3R_26615221_SNP [dm3] 3R_30789499_SNP [dm6]	C	G	5.098e^-4	0.974	DOWNSTREAM wts & 1 other INTERGENIC
2L	10627565	2L_10627565_SNP [dm3] 2L_10627565_SNP [dm6]	T	G	5.098e^-4	0.974	UTR_3_PRIME Trim9 DOWNSTREAM Trim9
X	10850809	X_10850809_SNP [dm3] X_10956776_SNP [dm6]	T	G	5.104e^-4	0.974	INTRON Myo10A
2R	16387412	2R_16387412_SNP [dm3] 2R_20499907_SNP [dm6]	C	T	5.106e^-4	0.974	INTERGENIC
2L	1892548	2L_1892548_SNP [dm3] 2L_1892548_SNP [dm6]	T	A	5.107e^-4	0.974	INTRON CG7337
2L	10516131	2L_10516131_SNP [dm3] 2L_10516131_SNP [dm6]	T	A	5.113e^-4	0.974	INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl
X	5020699	X_5020699_SNP [dm3] X_5126666_SNP [dm6]	T	G	5.114e^-4	0.974	INTRON rg & 1 other
2R	13184179	2R_13184179_SNP [dm3] 2R_17296674_SNP [dm6]	T	C	5.118e^-4	0.974	INTRON mbl
3L	11522522	3L_11522522_SNP [dm3] 3L_11529422_SNP [dm6]	A	C	5.119e^-4	0.974	INTRON Mob2
3L	11522526	3L_11522526_SNP [dm3] 3L_11529426_SNP [dm6]	T	A	5.119e^-4	0.974	INTRON Mob2
2R	9342601	2R_9342601_SNP [dm3] 2R_13455096_SNP [dm6]	G	C	5.120e^-4	0.974	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_sens
2R	14871562	2R_14871562_SNP [dm3] 2R_18984057_SNP [dm6]	T	C	5.120e^-4	0.974	INTERGENIC
2R	7462766	2R_7462766_SNP [dm3] 2R_11575261_SNP [dm6]	C	G	5.121e^-4	0.974	INTERGENIC
2R	5324529	2R_5324529_SNP [dm3] 2R_9437024_SNP [dm6]	C	G	5.124e^-4	0.974	INTRON ced-6
2L	16966155	2L_16966155_SNP [dm3] 2L_16966155_SNP [dm6]	T	C	5.137e^-4	0.974	DOWNSTREAM CR45285 INTERGENIC
3L	8219554	3L_8219554_SNP [dm3] 3L_8226454_SNP [dm6]	C	T	5.138e^-4	0.974	INTERGENIC
3L	15690074	3L_15690074_SNP [dm3] 3L_15696974_SNP [dm6]	A	T	5.140e^-4	0.974	DOWNSTREAM comm2 INTERGENIC
X	12812391	X_12812391_SNP [dm3] X_12918358_SNP [dm6]	G	A	5.141e^-4	0.974	INTRON fne
2R	15163827	2R_15163827_SNP [dm3] 2R_19276322_SNP [dm6]	T	A	5.143e^-4	0.974	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11854227	2L_11854227_SNP [dm3] 2L_11854227_SNP [dm6]	A	T	5.143e^-4	0.974	DOWNSTREAM CG42751 INTRON Pde1c
2L	6550222	2L_6550222_DEL [dm3] 2L_6550222_DEL [dm6]	CACACAC	C	5.146e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA
X	6124507	X_6124507_SNP [dm3] X_6230474_SNP [dm6]	C	T	5.149e^-4	0.974	SYNONYMOUS_CODING CG14446
2R	18635390	2R_18635390_SNP [dm3] 2R_22747885_SNP [dm6]	A	G	5.152e^-4	0.974	INTRON CG42260	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1534985	2L_1534985_SNP [dm3] 2L_1534985_SNP [dm6]	A	C	5.160e^-4	0.974	INTERGENIC
X	8312234	X_8312234_INS [dm3] X_8418201_INS [dm6]	A	AA	5.161e^-4	0.974	INTRON Trf2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12147908	3R_12147908_SNP [dm3] 3R_16322186_SNP [dm6]	A	G	5.162e^-4	0.974	UTR_3_PRIME CG44044 DOWNSTREAM tRNA:F2:89BC & 1 other INTRON Sulf1
2L	9824489	2L_9824489_SNP [dm3] 2L_9824489_SNP [dm6]	G	C	5.163e^-4	0.974	INTRON nAChRalpha6
3R	16650023	3R_16650023_SNP [dm3] 3R_20824301_SNP [dm6]	T	C	5.172e^-4	0.974	UPSTREAM CG17272 DOWNSTREAM RpS20 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	3149989	X_3149989_SNP [dm3] X_3255956_SNP [dm6]	C	T	5.174e^-4	0.974	UPSTREAM dnc INTRON dnc
X	12805830	X_12805830_DEL [dm3] X_12911797_DEL [dm6]	TGATCACGTTGGTTCCAGCT...	T	5.176e^-4	0.974	UTR_3_PRIME CG4645 UPSTREAM CR45625
2L	7113307	2L_7113307_SNP [dm3] 2L_7113307_SNP [dm6]	G	T	5.176e^-4	0.974	INTRON Pvf3
3R	19804155	3R_19804155_DEL [dm3] 3R_23978433_DEL [dm6]	AAGA	A	5.206e^-4	0.974	INTRON CG31140
3R	26360138	3R_26360138_SNP [dm3] 3R_30534416_SNP [dm6]	C	G	5.215e^-4	0.974	INTRON tmod
2L	6701616	2L_6701616_SNP [dm3] 2L_6701616_SNP [dm6]	C	A	5.216e^-4	0.974	INTRON Tsp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	22917537	3R_22917537_SNP [dm3] 3R_27091815_SNP [dm6]	T	A	5.218e^-4	0.974	UPSTREAM Cpr97Eb INTERGENIC
2L	7232854	2L_7232854_SNP [dm3] 2L_7232854_SNP [dm6]	T	C	5.223e^-4	0.974	UPSTREAM CG43800 INTRON Ndae1
2L	7235575	2L_7235575_SNP [dm3] 2L_7235575_SNP [dm6]	C	T	5.226e^-4	0.974	INTRON Ndae1
3R	19463204	3R_19463204_SNP [dm3] 3R_23637482_SNP [dm6]	A	T	5.227e^-4	0.974	INTRON CG31145
X	5553436	X_5553436_SNP [dm3] X_5659403_SNP [dm6]	C	A	5.227e^-4	0.974	INTRON CG42265
3R	20181094	3R_20181094_SNP [dm3] 3R_24355372_SNP [dm6]	C	T	5.240e^-4	0.974	DOWNSTREAM Golgin84 INTRON CG6454
2R	16439505	2R_16439505_SNP [dm3] 2R_20552000_SNP [dm6]	A	T	5.241e^-4	0.974	UTR_5_PRIME CG13430 & 1 other UPSTREAM CG13430	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4635484	2L_4635484_SNP [dm3] 2L_4635484_SNP [dm6]	G	A	5.250e^-4	0.974	INTERGENIC
3L	9964255	3L_9964255_SNP [dm3] 3L_9971155_SNP [dm6]	T	G	5.259e^-4	0.974	UTR_3_PRIME CG6674 DOWNSTREAM Nc
3L	8021509	3L_8021509_SNP [dm3] 3L_8028409_SNP [dm6]	A	G	5.259e^-4	0.974	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad
3L	12476227	3L_12476227_SNP [dm3] 3L_12483127_SNP [dm6]	T	A	5.260e^-4	0.974	INTRON CG10663 & 1 other
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	5.260e^-4	0.974	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6787744	2R_6787744_SNP [dm3] 2R_10900239_SNP [dm6]	A	C	5.261e^-4	0.974	INTERGENIC
2L	15752108	2L_15752108_SNP [dm3] 2L_15752108_SNP [dm6]	T	G	5.265e^-4	0.974	UPSTREAM l_2_35Df & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15752118	2L_15752118_SNP [dm3] 2L_15752118_SNP [dm6]	T	G	5.265e^-4	0.974	UPSTREAM l_2_35Df & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14756887	2R_14756887_SNP [dm3] 2R_18869382_SNP [dm6]	T	G	5.275e^-4	0.974	INTERGENIC
3L	20283506	3L_20283506_SNP [dm3] 3L_20290406_SNP [dm6]	G	A	5.282e^-4	0.974	DOWNSTREAM CR43890 INTRON gogo
3L	15753808	3L_15753808_SNP [dm3] 3L_15760708_SNP [dm6]	T	A	5.291e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19565433	X_19565433_SNP [dm3] X_19671400_SNP [dm6]	G	T	5.296e^-4	0.974	SYNONYMOUS_CODING Zw DOWNSTREAM et	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	3862666	3L_3862666_SNP [dm3] 3L_3862666_SNP [dm6]	T	G	5.297e^-4	0.974	DOWNSTREAM Awh INTERGENIC	TF binding site mE1_TFBS_cnc
3R	27442108	3R_27442108_SNP [dm3] 3R_31616386_SNP [dm6]	A	G	5.299e^-4	0.974	UTR_5_PRIME CG1792 UPSTREAM CG11539	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	20396997	X_20396997_DEL [dm3] X_20525970_DEL [dm6]	TA	T	5.312e^-4	0.974	INTERGENIC	transposable element FlyBase
2R	1017410	2R_1017410_SNP [dm3] 2R_5129905_SNP [dm6]	C	T	5.313e^-4	0.974	DOWNSTREAM CR43256 INTERGENIC
3L	12069443	3L_12069443_SNP [dm3] 3L_12076343_SNP [dm6]	G	A	5.315e^-4	0.974	INTRON Sema-5c
3R	12799734	3R_12799734_SNP [dm3] 3R_16974012_SNP [dm6]	A	T	5.320e^-4	0.974	INTERGENIC
3L	9824671	3L_9824671_SNP [dm3] 3L_9831571_SNP [dm6]	T	C	5.323e^-4	0.974	INTRON CG43897	TF binding site mE1_TFBS_cad
3R	2749468	3R_2749468_SNP [dm3] 3R_6923746_SNP [dm6]	G	A	5.331e^-4	0.974	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17855162	2L_17855162_SNP [dm3] 2L_17855162_SNP [dm6]	T	C	5.337e^-4	0.974	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15422395	2R_15422395_SNP [dm3] 2R_19534890_SNP [dm6]	A	G	5.338e^-4	0.974	INTRON sm
3R	21066654	3R_21066654_SNP [dm3] 3R_25240932_SNP [dm6]	G	T	5.344e^-4	0.974	SYNONYMOUS_CODING to
3L	18361043	3L_18361043_SNP [dm3] 3L_18367943_SNP [dm6]	T	G	5.345e^-4	0.974	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.874e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02217
In_3R_P	0.02369
In_3R_Mo	0.07761

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	8.0817	0.0176
In_2R_NS	5.0342	0.0807
In_3R_P	5.2005	0.0743
In_3R_K	5.4414	0.0658

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1661 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	6659878	3R_6659878_SNP [dm3] 3R_10834156_SNP [dm6]	G	C	3.288e^-8	0.062	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6659902	3R_6659902_DEL [dm3] 3R_10834180_DEL [dm6]	GCTCCAG	G	9.183e^-8	0.086	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6659901	3R_6659901_SNP [dm3] 3R_10834179_SNP [dm6]	A	C	2.931e^-7	0.141	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6669804	3R_6669804_SNP [dm3] 3R_10844082_SNP [dm6]	C	T	3.751e^-7	0.141	SYNONYMOUS_CODING Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	6669810	3R_6669810_SNP [dm3] 3R_10844088_SNP [dm6]	G	A	3.751e^-7	0.141	SYNONYMOUS_CODING Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	16388013	2L_16388013_INS [dm3] 2L_16388013_INS [dm6]	G	GG	1.292e^-6	0.384	INTERGENIC
2R	14646077	2R_14646077_SNP [dm3] 2R_18758572_SNP [dm6]	C	T	1.432e^-6	0.384	SPLICE_SITE_REGION Jabba SYNONYMOUS_CODING Jabba	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1072336	2R_1072336_INS [dm3] 2R_5184831_INS [dm6]	C	CGCC	2.678e^-6	0.609	INTRON Nipped-A
3R	8153237	3R_8153237_SNP [dm3] 3R_12327515_SNP [dm6]	C	T	2.960e^-6	0.609	EXON CR45584
X	3422598	X_3422598_SNP [dm3] X_3528565_SNP [dm6]	T	A	3.515e^-6	0.609	INTRON CG32791
2R	1072326	2R_1072326_INS [dm3] 2R_5184821_INS [dm6]	T	TT	3.677e^-6	0.609	INTRON Nipped-A
3R	25784282	3R_25784282_SNP [dm3] 3R_29958560_SNP [dm6]	T	G	4.257e^-6	0.609	INTRON TkR99D
X	3422445	X_3422445_SNP [dm3] X_3528412_SNP [dm6]	G	A	4.459e^-6	0.609	INTRON CG32791
3R	6699278	3R_6699278_SNP [dm3] 3R_10873556_SNP [dm6]	T	C	4.545e^-6	0.609	SYNONYMOUS_CODING CG4596	TF binding site mE1_TFBS_cad
2L	8893286	2L_8893286_SNP [dm3] 2L_8893286_SNP [dm6]	G	A	7.598e^-6	0.902	INTERGENIC
X	5920643	X_5920643_SNP [dm3] X_6026610_SNP [dm6]	T	C	8.330e^-6	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9191571	3L_9191571_SNP [dm3] 3L_9198471_SNP [dm6]	G	A	8.342e^-6	0.902	INTERGENIC
2R	14649714	2R_14649714_SNP [dm3] 2R_18762209_SNP [dm6]	C	T	8.861e^-6	0.902	UTR_5_PRIME Mctp
2L	8901240	2L_8901240_SNP [dm3] 2L_8901240_SNP [dm6]	C	T	9.135e^-6	0.902	INTRON CG34398
2R	12163788	2R_12163788_SNP [dm3] 2R_16276283_SNP [dm6]	C	A	1.075e^-5	1	NON_SYNONYMOUS_CODING CG33017
3R	6682426	3R_6682426_SNP [dm3] 3R_10856704_SNP [dm6]	G	T	1.372e^-5	1	UPSTREAM CG4570 DOWNSTREAM CG4511 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16145479	2R_16145479_SNP [dm3] 2R_20257974_SNP [dm6]	A	T	1.467e^-5	1	UPSTREAM Hsl & 1 other INTRON Hsl	TF binding site mE1_TFBS_cad
2L	3217460	2L_3217460_SNP [dm3] 2L_3217460_SNP [dm6]	G	C	1.480e^-5	1	INTERGENIC
2R	8113034	2R_8113034_DEL [dm3] 2R_12225529_DEL [dm6]	TGCGTAAA	T	1.533e^-5	1	INTRON CG8854
3L	8850557	3L_8850557_SNP [dm3] 3L_8857457_SNP [dm6]	T	C	1.575e^-5	1	INTRON dally
3R	6078825	3R_6078825_SNP [dm3] 3R_10253103_SNP [dm6]	C	A	1.575e^-5	1	SYNONYMOUS_CODING CG3999
2L	2287185	2L_2287185_SNP [dm3] 2L_2287185_SNP [dm6]	A	G	1.756e^-5	1	UTR_3_PRIME CG42658 UPSTREAM CG31681
2R	3909099	2R_3909099_SNP [dm3] 2R_8021594_SNP [dm6]	A	C	1.828e^-5	1	EXON CR45267	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	13188602	3L_13188602_SNP [dm3] 3L_13195502_SNP [dm6]	A	G	1.923e^-5	1	INTERGENIC
3R	13364199	3R_13364199_SNP [dm3] 3R_17538477_SNP [dm6]	C	T	1.933e^-5	1	SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
X	9179925	X_9179925_SNP [dm3] X_9285892_SNP [dm6]	A	C	2.026e^-5	1	UTR_5_PRIME lz
3L	11741814	3L_11741814_SNP [dm3] 3L_11748714_SNP [dm6]	C	T	2.060e^-5	1	INTRON CG6024
2R	10897085	2R_10897085_SNP [dm3] 2R_15009580_SNP [dm6]	T	A	2.081e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13133893	2R_13133893_SNP [dm3] 2R_17246388_SNP [dm6]	T	G	2.096e^-5	1	UPSTREAM CG18469 DOWNSTREAM CG12699 INTRON mbl
X	12213474	X_12213474_DEL [dm3] X_12319441_DEL [dm6]	TCAAACTGTTTATAAGTT...	T	2.133e^-5	1	INTRON Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18692747	2L_18692747_SNP [dm3] 2L_18692747_SNP [dm6]	C	T	2.164e^-5	1	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13363712	3R_13363712_SNP [dm3] 3R_17537990_SNP [dm6]	C	T	2.448e^-5	1	NON_SYNONYMOUS_CODING l_3_07882 DOWNSTREAM P5cr-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20489206	2L_20489206_SNP [dm3] 2L_20489206_SNP [dm6]	T	C	2.539e^-5	1	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13364203	3R_13364203_SNP [dm3] 3R_17538481_SNP [dm6]	G	A	2.598e^-5	1	NON_SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
3R	9941769	3R_9941769_SNP [dm3] 3R_14116047_SNP [dm6]	C	A	2.634e^-5	1	INTRON Kif19A	TF binding site mE1_TFBS_inv
2L	8905033	2L_8905033_SNP [dm3] 2L_8905033_SNP [dm6]	A	T	2.749e^-5	1	INTRON CG34398
3L	4666097	3L_4666097_SNP [dm3] 3L_4666097_SNP [dm6]	A	T	2.796e^-5	1	NON_SYNONYMOUS_CODING CG32236 INTRON axo
X	12422708	X_12422708_SNP [dm3] X_12528675_SNP [dm6]	A	C	2.816e^-5	1	INTRON CG43921
3R	13364202	3R_13364202_SNP [dm3] 3R_17538480_SNP [dm6]	G	A	2.836e^-5	1	SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
2R	12822916	2R_12822916_SNP [dm3] 2R_16935411_SNP [dm6]	G	A	2.939e^-5	1	INTRON Pkc53E
3R	8114058	3R_8114058_SNP [dm3] 3R_12288336_SNP [dm6]	T	G	2.958e^-5	1	INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	8124047	3R_8124047_SNP [dm3] 3R_12298325_SNP [dm6]	C	T	2.958e^-5	1	INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8130568	3R_8130568_SNP [dm3] 3R_12304846_SNP [dm6]	G	T	2.999e^-5	1	INTERGENIC
X	11578971	X_11578971_SNP [dm3] X_11684938_SNP [dm6]	A	T	3.136e^-5	1	INTRON bif
2L	8891623	2L_8891623_SNP [dm3] 2L_8891623_SNP [dm6]	A	G	3.201e^-5	1	INTRON CG42713
3R	6692156	3R_6692156_SNP [dm3] 3R_10866434_SNP [dm6]	A	G	3.206e^-5	1	INTRON SelR
3R	10122707	3R_10122707_DEL [dm3] 3R_14296985_DEL [dm6]	AACTACAGAAA...	A	3.363e^-5	1	INTRON CG12207
3R	13368067	3R_13368067_SNP [dm3] 3R_17542345_SNP [dm6]	A	G	3.379e^-5	1	INTRON SF1
X	5920627	X_5920627_SNP [dm3] X_6026594_SNP [dm6]	G	C	3.381e^-5	1	INTERGENIC
2R	8092915	2R_8092915_SNP [dm3] 2R_12205410_SNP [dm6]	C	G	3.407e^-5	1	UPSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10897126	2R_10897126_SNP [dm3] 2R_15009621_SNP [dm6]	A	G	3.420e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20489209	2L_20489209_SNP [dm3] 2L_20489209_SNP [dm6]	T	G	3.511e^-5	1	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8109912	2R_8109912_SNP [dm3] 2R_12222407_SNP [dm6]	C	A	3.578e^-5	1	INTERGENIC
3R	10227637	3R_10227637_SNP [dm3] 3R_14401915_SNP [dm6]	A	T	3.712e^-5	1	INTRON cv-c
2L	8223242	2L_8223242_SNP [dm3] 2L_8223242_SNP [dm6]	T	C	3.834e^-5	1	SYNONYMOUS_CODING Pvr
X	6952627	X_6952627_SNP [dm3] X_7058594_SNP [dm6]	T	C	3.934e^-5	1	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	8143710	3R_8143710_SNP [dm3] 3R_12317988_SNP [dm6]	C	A	3.962e^-5	1	INTERGENIC
3L	17591663	3L_17591663_SNP [dm3] 3L_17598563_SNP [dm6]	G	A	3.962e^-5	1	INTRON Eip74EF
2R	8109725	2R_8109725_SNP [dm3] 2R_12222220_SNP [dm6]	G	C	3.969e^-5	1	INTERGENIC
3L	13188081	3L_13188081_SNP [dm3] 3L_13194981_SNP [dm6]	C	A	4.064e^-5	1	INTERGENIC
3L	5461884	3L_5461884_SNP [dm3] 3L_5468784_SNP [dm6]	A	C	4.143e^-5	1	INTERGENIC
X	12213531	X_12213531_SNP [dm3] X_12319498_SNP [dm6]	A	T	4.156e^-5	1	INTRON Ten-a	TF binding site mE1_TFBS_cad
3L	13188650	3L_13188650_SNP [dm3] 3L_13195550_SNP [dm6]	T	A	4.237e^-5	1	INTERGENIC
3L	14581113	3L_14581113_SNP [dm3] 3L_14588013_SNP [dm6]	G	A	4.307e^-5	1	INTRON HGTX	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10092491	2L_10092491_SNP [dm3] 2L_10092491_SNP [dm6]	A	T	4.321e^-5	1	UPSTREAM CG13133 INTRON CG44153
3L	21293251	3L_21293251_SNP [dm3] 3L_21300151_SNP [dm6]	T	A	4.483e^-5	1	UPSTREAM Cpr78Cc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3310241	2R_3310241_SNP [dm3] 2R_7422736_SNP [dm6]	A	G	4.515e^-5	1	INTRON so EXON CR44202	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	3076551	3L_3076551_SNP [dm3] 3L_3076551_SNP [dm6]	T	C	4.537e^-5	1	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4527306	3L_4527306_SNP [dm3] 3L_4527306_SNP [dm6]	C	A	4.599e^-5	1	INTRON Tie
3R	20351934	3R_20351934_SNP [dm3] 3R_24526212_SNP [dm6]	C	A	4.729e^-5	1	INTRON CG13618
3L	2367629	3L_2367629_SNP [dm3] 3L_2367629_SNP [dm6]	A	T	4.752e^-5	1	DOWNSTREAM CG1317 INTERGENIC
3R	11507903	3R_11507903_SNP [dm3] 3R_15682181_SNP [dm6]	C	T	4.780e^-5	1	INTRON pxb
2R	10897097	2R_10897097_DEL [dm3] 2R_15009592_DEL [dm6]	TCGCTATAATATACATAT...	T	4.819e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19563393	3R_19563393_SNP [dm3] 3R_23737671_SNP [dm6]	A	G	4.917e^-5	1	INTRON Hmgcr
3R	26914130	3R_26914130_SNP [dm3] 3R_31088408_SNP [dm6]	A	C	4.933e^-5	1	INTERGENIC
2L	13842350	2L_13842350_DEL [dm3] 2L_13842350_DEL [dm6]	CAAAT	C	4.934e^-5	1	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	8893427	2L_8893427_SNP [dm3] 2L_8893427_SNP [dm6]	A	C	4.943e^-5	1	INTERGENIC
3L	12327350	3L_12327350_SNP [dm3] 3L_12334250_SNP [dm6]	G	A	4.974e^-5	1	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo
2L	15400980	2L_15400980_SNP [dm3] 2L_15400980_SNP [dm6]	A	G	5.028e^-5	1	UPSTREAM CR45374 INTERGENIC
X	12213509	X_12213509_SNP [dm3] X_12319476_SNP [dm6]	C	T	5.075e^-5	1	INTRON Ten-a	TF binding site mE1_TFBS_cad
2L	12383045	2L_12383045_SNP [dm3] 2L_12383045_SNP [dm6]	C	T	5.100e^-5	1	INTRON bru-2
2R	15430575	2R_15430575_SNP [dm3] 2R_19543070_SNP [dm6]	A	G	5.172e^-5	1	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13188174	3L_13188174_SNP [dm3] 3L_13195074_SNP [dm6]	C	G	5.190e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13188077	3L_13188077_SNP [dm3] 3L_13194977_SNP [dm6]	A	G	5.258e^-5	1	INTERGENIC
3L	13188083	3L_13188083_SNP [dm3] 3L_13194983_SNP [dm6]	C	T	5.258e^-5	1	INTERGENIC
3L	13188084	3L_13188084_SNP [dm3] 3L_13194984_SNP [dm6]	C	T	5.258e^-5	1	INTERGENIC
3R	6701073	3R_6701073_SNP [dm3] 3R_10875351_SNP [dm6]	A	T	5.292e^-5	1	UTR_3_PRIME CG4596
2L	9289503	2L_9289503_SNP [dm3] 2L_9289503_SNP [dm6]	A	T	5.313e^-5	1	INTRON Ggamma30A
2R	6407818	2R_6407818_SNP [dm3] 2R_10520313_SNP [dm6]	A	C	5.333e^-5	1	UTR_3_PRIME lola INTRON lola	TF binding site BDTNP1_TFBS_sna
3R	11507907	3R_11507907_SNP [dm3] 3R_15682185_SNP [dm6]	C	A	5.377e^-5	1	INTRON pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8223236	2L_8223236_SNP [dm3] 2L_8223236_SNP [dm6]	G	A	5.500e^-5	1	SYNONYMOUS_CODING Pvr
2R	13877321	2R_13877321_SNP [dm3] 2R_17989816_SNP [dm6]	G	A	5.610e^-5	1	SYNONYMOUS_CODING dpr13
3L	13188049	3L_13188049_SNP [dm3] 3L_13194949_SNP [dm6]	C	A	5.770e^-5	1	INTERGENIC
3L	6171907	3L_6171907_SNP [dm3] 3L_6178807_SNP [dm6]	C	T	5.771e^-5	1	UTR_3_PRIME CG7376 & 1 other DOWNSTREAM CG7376
3L	8811821	3L_8811821_SNP [dm3] 3L_8818721_SNP [dm6]	G	T	5.823e^-5	1	INTERGENIC
2L	6573085	2L_6573085_SNP [dm3] 2L_6573085_SNP [dm6]	A	G	5.892e^-5	1	INTRON CG11319
X	7080394	X_7080394_SNP [dm3] X_7186361_SNP [dm6]	C	T	5.910e^-5	1	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	26781231	3R_26781231_SNP [dm3] 3R_30955509_SNP [dm6]	T	C	6.075e^-5	1	INTERGENIC
3R	25398371	3R_25398371_SNP [dm3] 3R_29572649_SNP [dm6]	A	T	6.107e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3076530	3L_3076530_SNP [dm3] 3L_3076530_SNP [dm6]	A	G	6.131e^-5	1	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7169561	3L_7169561_INS [dm3] 3L_7176461_INS [dm6]	A	AC	6.165e^-5	1	INTRON Dscam2
X	5429860	X_5429860_SNP [dm3] X_5535827_SNP [dm6]	T	G	6.225e^-5	1	INTRON Vsx2
2L	8905603	2L_8905603_SNP [dm3] 2L_8905603_SNP [dm6]	A	C	6.338e^-5	1	INTRON CG34398
3R	6090694	3R_6090694_SNP [dm3] 3R_10264972_SNP [dm6]	C	T	6.425e^-5	1	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	14342272	3R_14342272_SNP [dm3] 3R_18516550_SNP [dm6]	A	T	6.463e^-5	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
3L	2787480	3L_2787480_SNP [dm3] 3L_2787480_SNP [dm6]	C	T	6.701e^-5	1	UTR_3_PRIME CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13416712	2R_13416712_SNP [dm3] 2R_17529207_SNP [dm6]	G	T	6.704e^-5	1	INTRON Patronin
2L	7041898	2L_7041898_SNP [dm3] 2L_7041898_SNP [dm6]	T	G	6.711e^-5	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14495973	2L_14495973_SNP [dm3] 2L_14495973_SNP [dm6]	A	C	6.723e^-5	1	DOWNSTREAM tRNA:P:35Bd INTERGENIC
2L	15466105	2L_15466105_SNP [dm3] 2L_15466105_SNP [dm6]	A	T	6.788e^-5	1	INTERGENIC
2R	6461161	2R_6461161_SNP [dm3] 2R_10573656_SNP [dm6]	C	T	6.857e^-5	1	INTRON psq
3R	14342310	3R_14342310_SNP [dm3] 3R_18516588_SNP [dm6]	C	A	6.962e^-5	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
3R	2324575	3R_2324575_SNP [dm3] 3R_6498853_SNP [dm6]	T	A	7.083e^-5	1	INTERGENIC
2R	16146219	2R_16146219_SNP [dm3] 2R_20258714_SNP [dm6]	T	G	7.214e^-5	1	SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8113408	2R_8113408_SNP [dm3] 2R_12225903_SNP [dm6]	G	T	7.324e^-5	1	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	12096370	2R_12096370_DEL [dm3] 2R_16208865_DEL [dm6]	GG	G	7.371e^-5	1	INTRON mrj	TF binding site BDTNP1_TFBS_dl
3L	11828932	3L_11828932_SNP [dm3] 3L_11835832_SNP [dm6]	G	A	7.438e^-5	1	SYNONYMOUS_CODING CG43064	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7040903	2L_7040903_SNP [dm3] 2L_7040903_SNP [dm6]	A	T	7.532e^-5	1	INTRON milt
3R	13908939	3R_13908939_SNP [dm3] 3R_18083217_SNP [dm6]	C	T	7.628e^-5	1	DOWNSTREAM CG14317 INTERGENIC
2R	19387091	2R_19387091_SNP [dm3] 2R_23499568_SNP [dm6]	A	G	7.927e^-5	1	UPSTREAM CG13558 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	26615378	3R_26615378_SNP [dm3] 3R_30789656_SNP [dm6]	T	A	7.977e^-5	1	UTR_3_PRIME wts DOWNSTREAM zfh1
X	9685878	X_9685878_DEL [dm3] X_9791845_DEL [dm6]	ATA	G	7.992e^-5	1	INTRON CG32698
2L	13665220	2L_13665220_SNP [dm3] 2L_13665220_SNP [dm6]	G	A	8.122e^-5	1	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6192028	3R_6192028_SNP [dm3] 3R_10366306_SNP [dm6]	G	T	8.182e^-5	1	INTRON Rfx
2L	8429789	2L_8429789_SNP [dm3] 2L_8429789_SNP [dm6]	T	C	8.297e^-5	1	INTRON Akap200	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2L	20489210	2L_20489210_DEL [dm3] 2L_20489210_DEL [dm6]	TCGCAGACT	T	8.300e^-5	1	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15389418	2R_15389418_SNP [dm3] 2R_19501913_SNP [dm6]	G	A	8.366e^-5	1	UPSTREAM CG16926 INTERGENIC
3R	26615302	3R_26615302_SNP [dm3] 3R_30789580_SNP [dm6]	T	C	8.368e^-5	1	DOWNSTREAM wts & 1 other INTERGENIC
2R	18023678	2R_18023678_SNP [dm3] 2R_22136173_SNP [dm6]	A	G	8.462e^-5	1	UPSTREAM a INTERGENIC
X	4277123	X_4277123_SNP [dm3] X_4383090_SNP [dm6]	C	T	8.536e^-5	1	DOWNSTREAM CG12688 INTERGENIC
3R	14342198	3R_14342198_SNP [dm3] 3R_18516476_SNP [dm6]	A	T	8.543e^-5	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
2R	15327015	2R_15327015_SNP [dm3] 2R_19439510_SNP [dm6]	A	G	8.594e^-5	1	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_sens
X	3270458	X_3270458_DEL [dm3] X_3376425_DEL [dm6]	AA	A	8.601e^-5	1	INTRON dm & 1 other
3R	6711434	3R_6711434_SNP [dm3] 3R_10885712_SNP [dm6]	C	T	8.629e^-5	1	UTR_5_PRIME Leash UPSTREAM CG14696	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14127387	2L_14127387_SNP [dm3] 2L_14127387_SNP [dm6]	G	A	8.725e^-5	1	INTERGENIC
3L	13728165	3L_13728165_SNP [dm3] 3L_13735065_SNP [dm6]	C	T	8.747e^-5	1	INTRON bru-3
3R	7717543	3R_7717543_SNP [dm3] 3R_11891821_SNP [dm6]	T	A	8.747e^-5	1	DOWNSTREAM CG6971 INTRON CG31368
3R	10162768	3R_10162768_DEL [dm3] 3R_14337046_DEL [dm6]	TAAA	T	8.755e^-5	1	INTRON NK7.1	TF binding site mE1_TFBS_kn
2L	15400979	2L_15400979_SNP [dm3] 2L_15400979_SNP [dm6]	G	T	8.817e^-5	1	UPSTREAM CR45374 INTERGENIC
2L	1047458	2L_1047458_INS [dm3] 2L_1047458_INS [dm6]	G	GG	8.930e^-5	1	INTRON IA-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7067893	2L_7067893_SNP [dm3] 2L_7067893_SNP [dm6]	T	G	8.961e^-5	1	UPSTREAM CG11289 INTERGENIC
3L	11741851	3L_11741851_SNP [dm3] 3L_11748751_SNP [dm6]	A	T	8.988e^-5	1	INTRON CG6024
3R	20351927	3R_20351927_SNP [dm3] 3R_24526205_SNP [dm6]	G	C	9.252e^-5	1	INTRON CG13618
3L	12031268	3L_12031268_SNP [dm3] 3L_12038168_SNP [dm6]	C	G	9.271e^-5	1	INTRON rols
2R	8109757	2R_8109757_SNP [dm3] 2R_12222252_SNP [dm6]	A	C	9.280e^-5	1	INTERGENIC
3R	7711602	3R_7711602_SNP [dm3] 3R_11885880_SNP [dm6]	G	A	9.306e^-5	1	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	12486923	3L_12486923_SNP [dm3] 3L_12493823_SNP [dm6]	C	T	9.338e^-5	1	DOWNSTREAM CR45682 INTRON CG10657
2L	6187092	2L_6187092_SNP [dm3] 2L_6187092_SNP [dm6]	G	C	9.396e^-5	1	INTRON CG34380	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5430082	X_5430082_SNP [dm3] X_5536049_SNP [dm6]	A	G	9.414e^-5	1	INTRON Vsx2
2L	15560151	2L_15560151_SNP [dm3] 2L_15560151_SNP [dm6]	T	C	9.435e^-5	1	INTRON kek3
2L	15194025	2L_15194025_SNP [dm3] 2L_15194025_SNP [dm6]	T	A	9.441e^-5	1	INTRON CG4168
3R	12347621	3R_12347621_SNP [dm3] 3R_16521899_SNP [dm6]	C	T	9.452e^-5	1	INTRON CG42342
2L	13842371	2L_13842371_SNP [dm3] 2L_13842371_SNP [dm6]	A	T	9.459e^-5	1	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	15381117	2L_15381117_DEL [dm3] 2L_15381117_DEL [dm6]	AG	A	9.476e^-5	1	INTERGENIC
2L	15224192	2L_15224192_SNP [dm3] 2L_15224192_SNP [dm6]	A	C	9.547e^-5	1	INTERGENIC
2R	9889542	2R_9889542_SNP [dm3] 2R_14002037_SNP [dm6]	T	C	9.557e^-5	1	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	12054464	X_12054464_SNP [dm3] X_12160431_SNP [dm6]	A	G	9.577e^-5	1	INTRON Ten-a
2R	9631828	2R_9631828_SNP [dm3] 2R_13744323_SNP [dm6]	G	A	9.594e^-5	1	INTRON fas
3R	9133366	3R_9133366_SNP [dm3] 3R_13307644_SNP [dm6]	C	T	9.658e^-5	1	INTRON CG32473
3R	6693960	3R_6693960_SNP [dm3] 3R_10868238_SNP [dm6]	C	A	9.660e^-5	1	UTR_5_PRIME SelR UPSTREAM Tsp86D INTRON SelR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	7640399	3R_7640399_SNP [dm3] 3R_11814677_SNP [dm6]	A	T	9.665e^-5	1	DOWNSTREAM glo INTERGENIC
3R	14342251	3R_14342251_SNP [dm3] 3R_18516529_SNP [dm6]	C	T	9.741e^-5	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
3R	26101361	3R_26101361_SNP [dm3] 3R_30275639_SNP [dm6]	T	C	9.792e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	8891974	2L_8891974_SNP [dm3] 2L_8891974_SNP [dm6]	T	A	9.792e^-5	1	UTR_3_PRIME CG42713 DOWNSTREAM CG42713
3R	9133048	3R_9133048_INS [dm3] 3R_13307326_INS [dm6]	C	CC	1.011e^-4	1	INTRON CG32473
3R	7765178	3R_7765178_SNP [dm3] 3R_11939456_SNP [dm6]	T	A	1.020e^-4	1	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi
2L	20489171	2L_20489171_SNP [dm3] 2L_20489171_SNP [dm6]	C	A	1.022e^-4	1	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20489175	2L_20489175_SNP [dm3] 2L_20489175_SNP [dm6]	T	G	1.023e^-4	1	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17787396	3L_17787396_SNP [dm3] 3L_17794296_SNP [dm6]	C	T	1.029e^-4	1	SYNONYMOUS_CODING CG42816
3L	13188580	3L_13188580_SNP [dm3] 3L_13195480_SNP [dm6]	A	C	1.037e^-4	1	INTERGENIC
3R	26615222	3R_26615222_SNP [dm3] 3R_30789500_SNP [dm6]	C	T	1.044e^-4	1	DOWNSTREAM wts & 1 other INTERGENIC
2L	8905589	2L_8905589_SNP [dm3] 2L_8905589_SNP [dm6]	A	G	1.048e^-4	1	INTRON CG34398
3L	13188108	3L_13188108_SNP [dm3] 3L_13195008_SNP [dm6]	G	C	1.061e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9564341	2L_9564341_SNP [dm3] 2L_9564341_SNP [dm6]	G	C	1.061e^-4	1	INTRON jp
2L	12026974	2L_12026974_SNP [dm3] 2L_12026974_SNP [dm6]	T	A	1.072e^-4	1	UPSTREAM dmGlut INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19256433	X_19256433_SNP [dm3] X_19362400_SNP [dm6]	T	A	1.077e^-4	1	INTRON kek5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13725805	3L_13725805_SNP [dm3] 3L_13732705_SNP [dm6]	C	T	1.080e^-4	1	INTRON bru-3
3R	19406246	3R_19406246_SNP [dm3] 3R_23580524_SNP [dm6]	C	T	1.083e^-4	1	DOWNSTREAM beat-IV INTERGENIC
3L	11042828	3L_11042828_SNP [dm3] 3L_11049728_SNP [dm6]	C	T	1.101e^-4	1	UPSTREAM CG43693 & 1 other INTRON CG43693
3R	10115799	3R_10115799_MNP [dm3] 3R_14290077_MNP [dm6]	TAG	AGT	1.107e^-4	1	UPSTREAM CG12207 INTRON CG12207	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15625328	2L_15625328_SNP [dm3] 2L_15625328_SNP [dm6]	T	G	1.110e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13842391	2L_13842391_SNP [dm3] 2L_13842391_SNP [dm6]	G	T	1.116e^-4	1	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3L	11002850	3L_11002850_SNP [dm3] 3L_11009750_SNP [dm6]	C	T	1.147e^-4	1	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	9494600	3L_9494600_SNP [dm3] 3L_9501500_SNP [dm6]	A	G	1.151e^-4	1	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	3911287	2R_3911287_SNP [dm3] 2R_8023782_SNP [dm6]	C	G	1.152e^-4	1	EXON CR45267	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	19323680	3R_19323680_INS [dm3] 3R_23497958_INS [dm6]	C	CT	1.159e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10090396	3R_10090396_SNP [dm3] 3R_14264674_SNP [dm6]	T	A	1.161e^-4	1	UTR_3_PRIME trx
2L	18404460	2L_18404460_SNP [dm3] 2L_18404460_SNP [dm6]	T	A	1.172e^-4	1	EXON CR44487
2L	15194085	2L_15194085_SNP [dm3] 2L_15194085_SNP [dm6]	T	A	1.174e^-4	1	INTRON CG4168
3R	6087038	3R_6087038_SNP [dm3] 3R_10261316_SNP [dm6]	T	C	1.182e^-4	1	NON_SYNONYMOUS_CODING Sirt6 UPSTREAM pont	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21273144	3L_21273144_SNP [dm3] 3L_21280044_SNP [dm6]	C	G	1.190e^-4	1	UTR_5_PRIME AcCoAS UPSTREAM AcCoAS DOWNSTREAM ppl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9017587	3L_9017587_SNP [dm3] 3L_9024487_SNP [dm6]	C	T	1.195e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9320507	3R_9320507_SNP [dm3] 3R_13494785_SNP [dm6]	A	G	1.205e^-4	1	INTERGENIC
2R	7276484	2R_7276484_SNP [dm3] 2R_11388979_SNP [dm6]	A	C	1.208e^-4	1	UPSTREAM CG30022 INTRON sprt
2R	14805308	2R_14805308_SNP [dm3] 2R_18917803_SNP [dm6]	C	T	1.209e^-4	1	INTRON sano
3R	14342260	3R_14342260_SNP [dm3] 3R_18516538_SNP [dm6]	A	G	1.211e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
X	18919952	X_18919952_INS [dm3] X_19025919_INS [dm6]	A	AGGA	1.217e^-4	1	UTR_3_PRIME CG43759
X	12207397	X_12207397_INS [dm3] X_12313364_INS [dm6]	C	CGCCAAGTC	1.232e^-4	1	INTRON Ten-a
3R	27138188	3R_27138188_SNP [dm3] 3R_31312466_SNP [dm6]	C	G	1.239e^-4	1	INTRON CG34347
2L	8891624	2L_8891624_SNP [dm3] 2L_8891624_SNP [dm6]	T	A	1.246e^-4	1	INTRON CG42713
2R	9631837	2R_9631837_DEL [dm3] 2R_13744332_DEL [dm6]	CCGC	C	1.266e^-4	1	INTRON fas
2L	1500463	2L_1500463_SNP [dm3] 2L_1500463_SNP [dm6]	T	C	1.268e^-4	1	UTR_5_PRIME CG18131 UPSTREAM CR44064 & 1 other DOWNSTREAM CG7420
3R	10115794	3R_10115794_INS [dm3] 3R_14290072_INS [dm6]	T	TTAC	1.274e^-4	1	UPSTREAM CG12207 INTRON CG12207	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11741805	3L_11741805_SNP [dm3] 3L_11748705_SNP [dm6]	G	T	1.288e^-4	1	INTRON CG6024
2R	10161625	2R_10161625_SNP [dm3] 2R_14274120_SNP [dm6]	G	T	1.292e^-4	1	SYNONYMOUS_CODING conv
3L	13726342	3L_13726342_SNP [dm3] 3L_13733242_SNP [dm6]	G	A	1.294e^-4	1	INTRON bru-3
2L	8901700	2L_8901700_SNP [dm3] 2L_8901700_SNP [dm6]	T	C	1.298e^-4	1	INTRON CG34398
3L	612070	3L_612070_SNP [dm3] 3L_612070_SNP [dm6]	C	T	1.303e^-4	1	INTERGENIC
2L	8429844	2L_8429844_SNP [dm3] 2L_8429844_SNP [dm6]	A	C	1.304e^-4	1	INTRON Akap200	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3R	8979781	3R_8979781_SNP [dm3] 3R_13154059_SNP [dm6]	G	A	1.306e^-4	1	INTRON timeout & 2 others
2L	8891900	2L_8891900_INS [dm3] 2L_8891900_INS [dm6]	A	AA	1.306e^-4	1	UTR_3_PRIME CG42713
3L	11066427	3L_11066427_SNP [dm3] 3L_11073327_SNP [dm6]	T	C	1.306e^-4	1	UTR_3_PRIME Mocs1 & 1 other DOWNSTREAM l_3_01239
3R	7717384	3R_7717384_SNP [dm3] 3R_11891662_SNP [dm6]	G	A	1.308e^-4	1	SYNONYMOUS_CODING CG31368 DOWNSTREAM CG6971
3R	8123574	3R_8123574_SNP [dm3] 3R_12297852_SNP [dm6]	G	A	1.311e^-4	1	INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6701428	3R_6701428_SNP [dm3] 3R_10875706_SNP [dm6]	G	A	1.312e^-4	1	UPSTREAM Sodh-2 DOWNSTREAM CG4596 INTERGENIC
3R	6670435	3R_6670435_SNP [dm3] 3R_10844713_SNP [dm6]	G	C	1.327e^-4	1	INTRON Cad86C
2L	8905594	2L_8905594_INS [dm3] 2L_8905594_INS [dm6]	C	TG	1.329e^-4	1	INTRON CG34398
3R	26865632	3R_26865632_SNP [dm3] 3R_31039910_SNP [dm6]	C	T	1.330e^-4	1	UTR_5_PRIME CanA1 INTRON CanA1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18636967	3L_18636967_SNP [dm3] 3L_18643867_SNP [dm6]	C	G	1.330e^-4	1	INTRON MYPT-75D
X	13210675	X_13210675_SNP [dm3] X_13316642_SNP [dm6]	G	A	1.341e^-4	1	INTRON IP3K2
3R	16980072	3R_16980072_SNP [dm3] 3R_21154350_SNP [dm6]	T	G	1.354e^-4	1	INTRON SNF4Agamma
3R	25469121	3R_25469121_SNP [dm3] 3R_29643399_SNP [dm6]	G	A	1.356e^-4	1	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21609975	3R_21609975_SNP [dm3] 3R_25784253_SNP [dm6]	G	C	1.358e^-4	1	INTERGENIC
2R	12096376	2R_12096376_SNP [dm3] 2R_16208871_SNP [dm6]	G	A	1.361e^-4	1	INTRON mrj	TF binding site BDTNP1_TFBS_dl
3R	8136774	3R_8136774_SNP [dm3] 3R_12311052_SNP [dm6]	T	A	1.362e^-4	1	UPSTREAM CG4066 INTERGENIC
2L	9319702	2L_9319702_SNP [dm3] 2L_9319702_SNP [dm6]	A	G	1.370e^-4	1	INTERGENIC
3L	13223061	3L_13223061_SNP [dm3] 3L_13229961_SNP [dm6]	G	C	1.377e^-4	1	INTRON caps
3L	4527125	3L_4527125_SNP [dm3] 3L_4527125_SNP [dm6]	T	A	1.383e^-4	1	INTRON Tie
2L	8891962	2L_8891962_SNP [dm3] 2L_8891962_SNP [dm6]	G	A	1.385e^-4	1	UTR_3_PRIME CG42713 DOWNSTREAM CG42713
2R	7072427	2R_7072427_SNP [dm3] 2R_11184922_SNP [dm6]	G	A	1.394e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11634954	3R_11634954_SNP [dm3] 3R_15809232_SNP [dm6]	T	C	1.418e^-4	1	INTRON alpha-Man-IIb
2L	1544471	2L_1544471_SNP [dm3] 2L_1544471_SNP [dm6]	A	C	1.431e^-4	1	INTERGENIC
3L	5646388	3L_5646388_SNP [dm3] 3L_5653288_SNP [dm6]	T	C	1.436e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sbb
3L	7482035	3L_7482035_SNP [dm3] 3L_7488935_SNP [dm6]	G	A	1.445e^-4	1	INTERGENIC
X	12837853	X_12837853_SNP [dm3] X_12943820_SNP [dm6]	T	C	1.449e^-4	1	INTRON fne
3L	7482019	3L_7482019_SNP [dm3] 3L_7488919_SNP [dm6]	T	A	1.452e^-4	1	INTERGENIC
X	14236706	X_14236706_SNP [dm3] X_14342673_SNP [dm6]	T	A	1.453e^-4	1	INTRON dpr8
3L	7482033	3L_7482033_SNP [dm3] 3L_7488933_SNP [dm6]	A	G	1.461e^-4	1	INTERGENIC
3R	26101587	3R_26101587_SNP [dm3] 3R_30275865_SNP [dm6]	T	C	1.482e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13842389	2L_13842389_SNP [dm3] 2L_13842389_SNP [dm6]	T	G	1.483e^-4	1	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	13842345	2L_13842345_SNP [dm3] 2L_13842345_SNP [dm6]	G	A	1.491e^-4	1	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	26936801	3R_26936801_SNP [dm3] 3R_31111079_SNP [dm6]	G	A	1.498e^-4	1	INTERGENIC
3R	8513502	3R_8513502_SNP [dm3] 3R_12687780_SNP [dm6]	A	G	1.527e^-4	1	SYNONYMOUS_CODING kar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3387995	2L_3387995_SNP [dm3] 2L_3387995_SNP [dm6]	A	T	1.528e^-4	1	UTR_3_PRIME CG42460 UPSTREAM CR45301 & 1 other DOWNSTREAM CG42460
2L	7041929	2L_7041929_SNP [dm3] 2L_7041929_SNP [dm6]	A	T	1.531e^-4	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13158108	2R_13158108_SNP [dm3] 2R_17270603_SNP [dm6]	A	T	1.537e^-4	1	INTRON mbl
2R	3911049	2R_3911049_DEL [dm3] 2R_8023544_DEL [dm6]	GCTCG	G	1.546e^-4	1	EXON CR45267
3L	1454346	3L_1454346_SNP [dm3] 3L_1454346_SNP [dm6]	C	A	1.550e^-4	1	INTRON Ptp61F
2L	14443337	2L_14443337_SNP [dm3] 2L_14443337_SNP [dm6]	G	C	1.558e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	11411561	2L_11411561_SNP [dm3] 2L_11411561_SNP [dm6]	C	T	1.565e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	13665279	2L_13665279_SNP [dm3] 2L_13665279_SNP [dm6]	G	T	1.565e^-4	1	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12962455	3L_12962455_SNP [dm3] 3L_12969355_SNP [dm6]	G	A	1.575e^-4	1	INTERGENIC
2R	18072684	2R_18072684_SNP [dm3] 2R_22185179_SNP [dm6]	T	C	1.579e^-4	1	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	17591611	3L_17591611_SNP [dm3] 3L_17598511_SNP [dm6]	A	C	1.581e^-4	1	INTRON Eip74EF	TF binding site mE1_TFBS_cad
2L	8911240	2L_8911240_SNP [dm3] 2L_8911240_SNP [dm6]	G	T	1.590e^-4	1	INTRON CG34398
3R	14342229	3R_14342229_SNP [dm3] 3R_18516507_SNP [dm6]	A	G	1.616e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
X	12054442	X_12054442_SNP [dm3] X_12160409_SNP [dm6]	A	G	1.619e^-4	1	INTRON Ten-a
X	14329290	X_14329290_SNP [dm3] X_14435257_SNP [dm6]	T	C	1.619e^-4	1	INTRON dpr8
3R	19369130	3R_19369130_SNP [dm3] 3R_23543408_SNP [dm6]	T	A	1.631e^-4	1	INTERGENIC
3L	14192415	3L_14192415_SNP [dm3] 3L_14199315_SNP [dm6]	C	G	1.634e^-4	1	INTRON nuf
2L	9409426	2L_9409426_SNP [dm3] 2L_9409426_SNP [dm6]	A	G	1.635e^-4	1	INTRON Shawl
2L	19605446	2L_19605446_SNP [dm3] 2L_19605446_SNP [dm6]	T	G	1.642e^-4	1	INTRON Lar EXON CR44978	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	4242700	3L_4242700_SNP [dm3] 3L_4242700_SNP [dm6]	G	A	1.646e^-4	1	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	11850537	2L_11850537_SNP [dm3] 2L_11850537_SNP [dm6]	A	T	1.656e^-4	1	SYNONYMOUS_CODING Mal-B2 INTRON Pde1c
3L	17815597	3L_17815597_SNP [dm3] 3L_17822497_SNP [dm6]	T	A	1.661e^-4	1	UPSTREAM Grd INTRON Ir75c
2L	12383121	2L_12383121_SNP [dm3] 2L_12383121_SNP [dm6]	C	T	1.673e^-4	1	INTRON bru-2
X	12213544	X_12213544_SNP [dm3] X_12319511_SNP [dm6]	G	A	1.676e^-4	1	INTRON Ten-a	TF binding site mE1_TFBS_cad
2L	13143936	2L_13143936_SNP [dm3] 2L_13143936_SNP [dm6]	C	T	1.677e^-4	1	UPSTREAM CG16978 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8397351	3L_8397351_SNP [dm3] 3L_8404251_SNP [dm6]	G	A	1.682e^-4	1	SYNONYMOUS_CODING mkg-p UTR_3_PRIME CG33057	TF binding site mE1_TFBS_sens
2R	12638757	2R_12638757_SNP [dm3] 2R_16751252_SNP [dm6]	G	A	1.684e^-4	1	UTR_5_PRIME Acp53C14c UPSTREAM Acp53Ea DOWNSTREAM unc-104
2L	9409309	2L_9409309_INS [dm3] 2L_9409309_INS [dm6]	C	TG	1.685e^-4	1	INTRON Shawl
X	17024160	X_17024160_SNP [dm3] X_17130127_SNP [dm6]	T	G	1.687e^-4	1	UPSTREAM CG5004 INTRON CG5004
2L	7042103	2L_7042103_SNP [dm3] 2L_7042103_SNP [dm6]	A	C	1.703e^-4	1	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	8439495	X_8439495_SNP [dm3] X_8545462_SNP [dm6]	A	G	1.708e^-4	1	SYNONYMOUS_CODING Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25627824	3R_25627824_SNP [dm3] 3R_29802102_SNP [dm6]	C	G	1.709e^-4	1	SYNONYMOUS_CODING CG7834 DOWNSTREAM Ice	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	12774969	2R_12774969_SNP [dm3] 2R_16887464_SNP [dm6]	A	T	1.709e^-4	1	INTRON CG8910
2L	9315238	2L_9315238_SNP [dm3] 2L_9315238_SNP [dm6]	G	C	1.723e^-4	1	INTERGENIC
2L	15402084	2L_15402084_SNP [dm3] 2L_15402084_SNP [dm6]	T	C	1.741e^-4	1	INTERGENIC
2R	14428846	2R_14428846_SNP [dm3] 2R_18541341_SNP [dm6]	G	A	1.742e^-4	1	INTRON Rgk2
2R	8091180	2R_8091180_SNP [dm3] 2R_12203675_SNP [dm6]	C	A	1.744e^-4	1	INTERGENIC
X	921614	X_921614_DEL [dm3] X_1027581_DEL [dm6]	CTC	C	1.745e^-4	1	UPSTREAM CG32814 & 1 other DOWNSTREAM CDC45L INTRON su_w[a]_ & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9409329	2L_9409329_SNP [dm3] 2L_9409329_SNP [dm6]	T	A	1.753e^-4	1	INTRON Shawl
2L	15401192	2L_15401192_SNP [dm3] 2L_15401192_SNP [dm6]	A	G	1.758e^-4	1	UPSTREAM CR45374 INTERGENIC
2R	12154212	2R_12154212_SNP [dm3] 2R_16266707_SNP [dm6]	T	C	1.763e^-4	1	DOWNSTREAM Khc INTRON csul
2L	11850534	2L_11850534_SNP [dm3] 2L_11850534_SNP [dm6]	A	G	1.765e^-4	1	SYNONYMOUS_CODING Mal-B2 INTRON Pde1c
2R	9849005	2R_9849005_DEL [dm3] 2R_13961500_DEL [dm6]	ATATTTACAAA...	A	1.766e^-4	1	INTRON Cp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16145043	2R_16145043_SNP [dm3] 2R_20257538_SNP [dm6]	T	A	1.774e^-4	1	UPSTREAM Hsl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	919050	X_919050_SNP [dm3] X_1025017_SNP [dm6]	C	G	1.785e^-4	1	INTRON su_w[a]_ & 2 others	transposable element FlyBase
3R	14342166	3R_14342166_SNP [dm3] 3R_18516444_SNP [dm6]	T	C	1.793e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	14992089	2L_14992089_SNP [dm3] 2L_14992089_SNP [dm6]	G	A	1.810e^-4	1	INTRON mol
3L	18208348	3L_18208348_SNP [dm3] 3L_18215248_SNP [dm6]	T	C	1.812e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8109780	2R_8109780_SNP [dm3] 2R_12222275_SNP [dm6]	G	A	1.814e^-4	1	INTERGENIC
3R	9325078	3R_9325078_SNP [dm3] 3R_13499356_SNP [dm6]	T	C	1.821e^-4	1	INTERGENIC
X	12220675	X_12220675_SNP [dm3] X_12326642_SNP [dm6]	A	G	1.823e^-4	1	INTRON Ten-a
2L	15288425	2L_15288425_MNP [dm3] 2L_15288425_MNP [dm6]	TAC	GTT	1.827e^-4	1	INTERGENIC
2L	15288428	2L_15288428_INS [dm3] 2L_15288428_INS [dm6]	T	TAG	1.827e^-4	1	INTERGENIC
2L	15288438	2L_15288438_SNP [dm3] 2L_15288438_SNP [dm6]	A	T	1.827e^-4	1	INTERGENIC
2L	15288439	2L_15288439_INS [dm3] 2L_15288439_INS [dm6]	C	CTATT	1.827e^-4	1	INTERGENIC
2L	15288446	2L_15288446_SNP [dm3] 2L_15288446_SNP [dm6]	A	C	1.827e^-4	1	INTERGENIC
2L	15288443	2L_15288443_SNP [dm3] 2L_15288443_SNP [dm6]	C	A	1.842e^-4	1	INTERGENIC
3L	11002847	3L_11002847_SNP [dm3] 3L_11009747_SNP [dm6]	T	C	1.851e^-4	1	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	1047449	2L_1047449_SNP [dm3] 2L_1047449_SNP [dm6]	A	T	1.857e^-4	1	INTRON IA-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1524648	3L_1524648_SNP [dm3] 3L_1524648_SNP [dm6]	A	G	1.859e^-4	1	SYNONYMOUS_CODING CG12090
2R	19239985	2R_19239985_SNP [dm3] 2R_23352462_SNP [dm6]	G	C	1.870e^-4	1	DOWNSTREAM CG34210 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1460891	3L_1460891_SNP [dm3] 3L_1460891_SNP [dm6]	T	C	1.884e^-4	1	INTRON Ptp61F EXON CR44842	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15381113	2L_15381113_SNP [dm3] 2L_15381113_SNP [dm6]	C	T	1.902e^-4	1	INTERGENIC
2L	12191356	2L_12191356_SNP [dm3] 2L_12191356_SNP [dm6]	C	T	1.902e^-4	1	INTRON aret
3R	8123460	3R_8123460_SNP [dm3] 3R_12297738_SNP [dm6]	T	C	1.907e^-4	1	INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7999063	2L_7999063_SNP [dm3] 2L_7999063_SNP [dm6]	G	A	1.909e^-4	1	UTR_5_PRIME Sirup UPSTREAM CG7227 DOWNSTREAM Wwox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	8113333	2R_8113333_SNP [dm3] 2R_12225828_SNP [dm6]	C	T	1.911e^-4	1	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6395564	3L_6395564_SNP [dm3] 3L_6402464_SNP [dm6]	G	A	1.917e^-4	1	INTRON CG42747
2R	15396268	2R_15396268_SNP [dm3] 2R_19508763_SNP [dm6]	A	G	1.920e^-4	1	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8333464	2R_8333464_SNP [dm3] 2R_12445959_SNP [dm6]	A	G	1.922e^-4	1	INTRON Dyb
3R	26871108	3R_26871108_SNP [dm3] 3R_31045386_SNP [dm6]	C	G	1.927e^-4	1	UPSTREAM CG33920 INTRON CanA1
2L	13821899	2L_13821899_SNP [dm3] 2L_13821899_SNP [dm6]	G	A	1.934e^-4	1	SYNONYMOUS_CODING b	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9892999	2R_9892999_SNP [dm3] 2R_14005494_SNP [dm6]	A	G	1.942e^-4	1	DOWNSTREAM mir-4978 INTRON mam
3L	12327338	3L_12327338_SNP [dm3] 3L_12334238_SNP [dm6]	C	T	1.942e^-4	1	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo
3R	10526632	3R_10526632_SNP [dm3] 3R_14700910_SNP [dm6]	G	A	1.942e^-4	1	INTRON kibra	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11406235	2L_11406235_SNP [dm3] 2L_11406235_SNP [dm6]	G	C	1.947e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	1281763	3L_1281763_SNP [dm3] 3L_1281763_SNP [dm6]	G	C	1.950e^-4	1	INTRON CG32333
2L	10727538	2L_10727538_DEL [dm3] 2L_10727538_DEL [dm6]	AAG	A	1.951e^-4	1	INTRON CG6431
X	11895579	X_11895579_SNP [dm3] X_12001546_SNP [dm6]	A	T	1.956e^-4	1	INTRON fw
3L	16558392	3L_16558392_SNP [dm3] 3L_16565292_SNP [dm6]	A	T	1.965e^-4	1	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	9058082	3R_9058082_SNP [dm3] 3R_13232360_SNP [dm6]	A	C	1.969e^-4	1	INTRON Ace
2R	15396226	2R_15396226_SNP [dm3] 2R_19508721_SNP [dm6]	A	G	2.004e^-4	1	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6539705	3R_6539705_INS [dm3] 3R_10713983_INS [dm6]	C	CGC	2.006e^-4	1	UPSTREAM CG4073 INTERGENIC
3L	17773437	3L_17773437_SNP [dm3] 3L_17780337_SNP [dm6]	A	C	2.013e^-4	1	INTERGENIC
X	19256558	X_19256558_SNP [dm3] X_19362525_SNP [dm6]	C	T	2.017e^-4	1	INTRON kek5	TF binding site BDTNP1_TFBS_dl
2R	10897084	2R_10897084_SNP [dm3] 2R_15009579_SNP [dm6]	A	C	2.028e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10227787	3R_10227787_SNP [dm3] 3R_14402065_SNP [dm6]	A	T	2.038e^-4	1	INTRON cv-c
2L	15247121	2L_15247121_SNP [dm3] 2L_15247121_SNP [dm6]	G	T	2.039e^-4	1	INTRON ZnT35C
3R	26100339	3R_26100339_SNP [dm3] 3R_30274617_SNP [dm6]	A	T	2.045e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	2285727	3R_2285727_SNP [dm3] 3R_6460005_SNP [dm6]	T	C	2.057e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13665284	2L_13665284_SNP [dm3] 2L_13665284_SNP [dm6]	C	T	2.070e^-4	1	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26446408	3R_26446408_SNP [dm3] 3R_30620686_SNP [dm6]	T	G	2.073e^-4	1	INTRON CG44954
2R	8092581	2R_8092581_SNP [dm3] 2R_12205076_SNP [dm6]	C	T	2.088e^-4	1	INTERGENIC
2L	2823295	2L_2823295_DEL [dm3] 2L_2823295_DEL [dm6]	TCTCT	T	2.094e^-4	1	DOWNSTREAM CG3123 INTRON Duox
2L	8997029	2L_8997029_SNP [dm3] 2L_8997029_SNP [dm6]	A	G	2.103e^-4	1	SYNONYMOUS_CODING alien UPSTREAM CG18661	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18406884	2R_18406884_SNP [dm3] 2R_22519379_SNP [dm6]	G	T	2.113e^-4	1	INTRON px	TF binding site mE1_TFBS_chinmo
2R	8112670	2R_8112670_SNP [dm3] 2R_12225165_SNP [dm6]	C	T	2.114e^-4	1	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
3R	19151095	3R_19151095_SNP [dm3] 3R_23325373_SNP [dm6]	A	C	2.118e^-4	1	INTRON pnt
2L	9409339	2L_9409339_SNP [dm3] 2L_9409339_SNP [dm6]	G	A	2.133e^-4	1	INTRON Shawl
3L	13727541	3L_13727541_SNP [dm3] 3L_13734441_SNP [dm6]	A	G	2.146e^-4	1	INTRON bru-3
3R	21477281	3R_21477281_DEL [dm3] 3R_25651559_DEL [dm6]	TT	T	2.161e^-4	1	DOWNSTREAM mir-92b INTERGENIC	TF binding site mE1_TFBS_cad
2R	18812205	2R_18812205_SNP [dm3] 2R_22924682_SNP [dm6]	C	T	2.167e^-4	1	UTR_5_PRIME Nup214 UPSTREAM CG42678	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15288452	2L_15288452_SNP [dm3] 2L_15288452_SNP [dm6]	G	T	2.168e^-4	1	INTERGENIC
3L	16543557	3L_16543557_SNP [dm3] 3L_16550457_SNP [dm6]	T	C	2.171e^-4	1	INTERGENIC
2L	7968331	2L_7968331_SNP [dm3] 2L_7968331_SNP [dm6]	T	C	2.177e^-4	1	INTRON Snoo
2L	7696878	2L_7696878_SNP [dm3] 2L_7696878_SNP [dm6]	T	A	2.179e^-4	1	INTRON Tep2
3L	7449366	3L_7449366_SNP [dm3] 3L_7456266_SNP [dm6]	G	A	2.181e^-4	1	SYNONYMOUS_CODING ppk26	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6099893	3R_6099893_SNP [dm3] 3R_10274171_SNP [dm6]	G	A	2.184e^-4	1	INTRON CG43143
2R	14871562	2R_14871562_SNP [dm3] 2R_18984057_SNP [dm6]	T	C	2.191e^-4	1	INTERGENIC
2L	15395305	2L_15395305_SNP [dm3] 2L_15395305_SNP [dm6]	A	T	2.193e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26615305	3R_26615305_SNP [dm3] 3R_30789583_SNP [dm6]	A	C	2.219e^-4	1	DOWNSTREAM wts & 1 other INTERGENIC
3R	10238133	3R_10238133_SNP [dm3] 3R_14412411_SNP [dm6]	C	A	2.230e^-4	1	INTRON cv-c	TF binding site mE1_TFBS_inv
2L	6581004	2L_6581004_SNP [dm3] 2L_6581004_SNP [dm6]	A	C	2.231e^-4	1	INTRON CG11319
2R	12237667	2R_12237667_SNP [dm3] 2R_16350162_SNP [dm6]	C	T	2.233e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6684020	3R_6684020_SNP [dm3] 3R_10858298_SNP [dm6]	T	A	2.234e^-4	1	SYNONYMOUS_CODING CG14694 DOWNSTREAM CG4570	TF binding site BDTNP1_TFBS_dl
3R	9133338	3R_9133338_SNP [dm3] 3R_13307616_SNP [dm6]	A	G	2.241e^-4	1	INTRON CG32473
3L	10560907	3L_10560907_DEL [dm3] 3L_10567807_DEL [dm6]	CTGC	C	2.250e^-4	1	INTRON A2bp1
2L	13842321	2L_13842321_DEL [dm3] 2L_13842321_DEL [dm6]	AAATAGCTCA	A	2.251e^-4	1	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	6079522	3R_6079522_SNP [dm3] 3R_10253800_SNP [dm6]	T	C	2.270e^-4	1	SYNONYMOUS_CODING CG3999	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14889318	2R_14889318_SNP [dm3] 2R_19001813_SNP [dm6]	C	T	2.275e^-4	1	INTRON tn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3892394	3R_3892394_SNP [dm3] 3R_8066672_SNP [dm6]	T	G	2.276e^-4	1	INTRON mAChR-B
2L	6187063	2L_6187063_SNP [dm3] 2L_6187063_SNP [dm6]	T	C	2.276e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21159821	3L_21159821_DEL [dm3] 3L_21166721_DEL [dm6]	AG	A	2.281e^-4	1	INTRON Ac78C
3R	11507642	3R_11507642_DEL [dm3] 3R_15681920_DEL [dm6]	GCCCTTG	G	2.282e^-4	1	INTRON pxb
3R	7633689	3R_7633689_SNP [dm3] 3R_11807967_SNP [dm6]	T	C	2.286e^-4	1	INTRON ClC-a
3R	9990501	3R_9990501_SNP [dm3] 3R_14164779_SNP [dm6]	G	A	2.293e^-4	1	DOWNSTREAM Dop1R1 INTERGENIC
3R	20503510	3R_20503510_SNP [dm3] 3R_24677788_SNP [dm6]	T	C	2.294e^-4	1	INTRON slo
2L	8998120	2L_8998120_SNP [dm3] 2L_8998120_SNP [dm6]	T	G	2.298e^-4	1	NON_SYNONYMOUS_CODING CG18661 UPSTREAM alien & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	26100342	3R_26100342_DEL [dm3] 3R_30274620_DEL [dm6]	AA	A	2.330e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	15326876	2R_15326876_SNP [dm3] 2R_19439371_SNP [dm6]	G	A	2.331e^-4	1	SPLICE_SITE_REGION Spt5 INTRON Spt5
2L	3217383	2L_3217383_SNP [dm3] 2L_3217383_SNP [dm6]	A	T	2.331e^-4	1	INTERGENIC
2L	8976194	2L_8976194_SNP [dm3] 2L_8976194_SNP [dm6]	T	C	2.334e^-4	1	UPSTREAM CG9541 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13729228	3L_13729228_SNP [dm3] 3L_13736128_SNP [dm6]	T	C	2.337e^-4	1	INTRON bru-3
3L	10989556	3L_10989556_SNP [dm3] 3L_10996456_SNP [dm6]	C	T	2.341e^-4	1	INTRON klu
3L	18730812	3L_18730812_SNP [dm3] 3L_18737712_SNP [dm6]	T	G	2.342e^-4	1	INTERGENIC
3R	15259964	3R_15259964_SNP [dm3] 3R_19434242_SNP [dm6]	A	T	2.342e^-4	1	INTRON CG31221
3R	22180106	3R_22180106_SNP [dm3] 3R_26354384_SNP [dm6]	C	A	2.344e^-4	1	INTRON CG33970
2L	8911579	2L_8911579_SNP [dm3] 2L_8911579_SNP [dm6]	C	A	2.350e^-4	1	INTRON CG34398	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6096247	3R_6096247_SNP [dm3] 3R_10270525_SNP [dm6]	C	T	2.359e^-4	1	INTRON CG43143
2R	14645040	2R_14645040_SNP [dm3] 2R_18757535_SNP [dm6]	T	A	2.371e^-4	1	DOWNSTREAM Jabba & 1 other INTRON Jabba
2L	8906369	2L_8906369_SNP [dm3] 2L_8906369_SNP [dm6]	G	A	2.382e^-4	1	INTRON CG34398
X	11895577	X_11895577_SNP [dm3] X_12001544_SNP [dm6]	G	A	2.388e^-4	1	INTRON fw
2L	7044668	2L_7044668_SNP [dm3] 2L_7044668_SNP [dm6]	C	G	2.393e^-4	1	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12609977	3L_12609977_SNP [dm3] 3L_12616877_SNP [dm6]	G	A	2.398e^-4	1	SYNONYMOUS_CODING caup	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8150368	3R_8150368_SNP [dm3] 3R_12324646_SNP [dm6]	C	T	2.408e^-4	1	SYNONYMOUS_CODING CG10013
2R	5891670	2R_5891670_SNP [dm3] 2R_10004165_SNP [dm6]	T	C	2.410e^-4	1	INTRON Pka-R2
3L	10698632	3L_10698632_SNP [dm3] 3L_10705532_SNP [dm6]	C	T	2.424e^-4	1	INTERGENIC
X	7080403	X_7080403_SNP [dm3] X_7186370_SNP [dm6]	C	T	2.429e^-4	1	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	15401074	2L_15401074_SNP [dm3] 2L_15401074_SNP [dm6]	T	A	2.438e^-4	1	UPSTREAM CR45374 INTERGENIC
2R	14889323	2R_14889323_SNP [dm3] 2R_19001818_SNP [dm6]	T	A	2.444e^-4	1	INTRON tn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2287292	2L_2287292_SNP [dm3] 2L_2287292_SNP [dm6]	G	C	2.457e^-4	1	UTR_3_PRIME CG42658 UPSTREAM CG31681
3L	2467736	3L_2467736_SNP [dm3] 3L_2467736_SNP [dm6]	A	T	2.460e^-4	1	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	8024238	2R_8024238_SNP [dm3] 2R_12136733_SNP [dm6]	C	A	2.463e^-4	1	INTERGENIC
3R	6090343	3R_6090343_SNP [dm3] 3R_10264621_SNP [dm6]	C	G	2.464e^-4	1	UTR_5_PRIME CG43143 DOWNSTREAM pont	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1524651	3L_1524651_SNP [dm3] 3L_1524651_SNP [dm6]	C	G	2.468e^-4	1	SYNONYMOUS_CODING CG12090
2L	9409362	2L_9409362_SNP [dm3] 2L_9409362_SNP [dm6]	C	A	2.481e^-4	1	INTRON Shawl
3L	17820437	3L_17820437_SNP [dm3] 3L_17827337_SNP [dm6]	A	T	2.483e^-4	1	INTRON Grd
3R	26615001	3R_26615001_SNP [dm3] 3R_30789279_SNP [dm6]	C	T	2.507e^-4	1	DOWNSTREAM wts & 1 other INTERGENIC
2L	6783739	2L_6783739_SNP [dm3] 2L_6783739_SNP [dm6]	C	A	2.510e^-4	1	INTRON nrv1
2L	11438264	2L_11438264_SNP [dm3] 2L_11438264_SNP [dm6]	T	C	2.520e^-4	1	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10442419	3L_10442419_SNP [dm3] 3L_10449319_SNP [dm6]	G	A	2.522e^-4	1	INTERGENIC
3R	8142335	3R_8142335_SNP [dm3] 3R_12316613_SNP [dm6]	G	A	2.527e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14342282	3R_14342282_SNP [dm3] 3R_18516560_SNP [dm6]	A	G	2.527e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	15288432	2L_15288432_SNP [dm3] 2L_15288432_SNP [dm6]	G	T	2.532e^-4	1	INTERGENIC
3L	17819729	3L_17819729_SNP [dm3] 3L_17826629_SNP [dm6]	T	A	2.538e^-4	1	INTRON Grd
3L	10940673	3L_10940673_SNP [dm3] 3L_10947573_SNP [dm6]	T	A	2.538e^-4	1	INTERGENIC
3R	8557776	3R_8557776_SNP [dm3] 3R_12732054_SNP [dm6]	A	G	2.548e^-4	1	INTERGENIC
3L	5688496	3L_5688496_SNP [dm3] 3L_5695396_SNP [dm6]	C	T	2.557e^-4	1	INTRON sif
3L	2367635	3L_2367635_SNP [dm3] 3L_2367635_SNP [dm6]	G	A	2.558e^-4	1	DOWNSTREAM CG1317 INTERGENIC
2L	15288448	2L_15288448_SNP [dm3] 2L_15288448_SNP [dm6]	C	A	2.575e^-4	1	INTERGENIC
2L	15288454	2L_15288454_INS [dm3] 2L_15288454_INS [dm6]	A	TT	2.575e^-4	1	INTERGENIC
2L	15288458	2L_15288458_SNP [dm3] 2L_15288458_SNP [dm6]	T	A	2.575e^-4	1	INTERGENIC
2L	15288460	2L_15288460_SNP [dm3] 2L_15288460_SNP [dm6]	A	T	2.575e^-4	1	INTERGENIC
2L	15288463	2L_15288463_MNP [dm3] 2L_15288463_MNP [dm6]	TTGAGT	GCACTA	2.575e^-4	1	INTERGENIC
2L	15288471	2L_15288471_SNP [dm3] 2L_15288471_SNP [dm6]	G	A	2.575e^-4	1	INTERGENIC
2L	15288477	2L_15288477_SNP [dm3] 2L_15288477_SNP [dm6]	T	A	2.575e^-4	1	INTERGENIC
2L	15288491	2L_15288491_SNP [dm3] 2L_15288491_SNP [dm6]	T	A	2.575e^-4	1	INTERGENIC
3R	26615304	3R_26615304_SNP [dm3] 3R_30789582_SNP [dm6]	G	T	2.577e^-4	1	DOWNSTREAM wts & 1 other INTERGENIC
2L	4694633	2L_4694633_SNP [dm3] 2L_4694633_SNP [dm6]	G	A	2.586e^-4	1	UPSTREAM CG34351 INTERGENIC
3R	9727161	3R_9727161_SNP [dm3] 3R_13901439_SNP [dm6]	A	C	2.598e^-4	1	UPSTREAM ems INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12140467	2L_12140467_SNP [dm3] 2L_12140467_SNP [dm6]	T	C	2.604e^-4	1	DOWNSTREAM Gr33a INTERGENIC
2L	13842433	2L_13842433_SNP [dm3] 2L_13842433_SNP [dm6]	A	C	2.609e^-4	1	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	14003230	2L_14003230_SNP [dm3] 2L_14003230_SNP [dm6]	T	C	2.610e^-4	1	INTERGENIC
2L	7968289	2L_7968289_SNP [dm3] 2L_7968289_SNP [dm6]	G	C	2.615e^-4	1	INTRON Snoo
2R	9889093	2R_9889093_SNP [dm3] 2R_14001588_SNP [dm6]	A	G	2.625e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7061538	2L_7061538_SNP [dm3] 2L_7061538_SNP [dm6]	T	A	2.625e^-4	1	NON_SYNONYMOUS_CODING Mnn1 UPSTREAM CG31907
2L	15736082	2L_15736082_SNP [dm3] 2L_15736082_SNP [dm6]	A	G	2.628e^-4	1	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12973908	3L_12973908_INS [dm3] 3L_12980808_INS [dm6]	G	GGA	2.633e^-4	1	INTERGENIC
2R	3344059	2R_3344059_SNP [dm3] 2R_7456554_SNP [dm6]	A	G	2.639e^-4	1	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	9321083	3R_9321083_SNP [dm3] 3R_13495361_SNP [dm6]	C	G	2.642e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1544472	2L_1544472_SNP [dm3] 2L_1544472_SNP [dm6]	A	C	2.643e^-4	1	INTERGENIC
2R	12563065	2R_12563065_SNP [dm3] 2R_16675560_SNP [dm6]	C	T	2.644e^-4	1	INTRON CG30463
3L	8905966	3L_8905966_SNP [dm3] 3L_8912866_SNP [dm6]	A	C	2.648e^-4	1	UPSTREAM mfr INTRON Tsp66E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	10526620	3R_10526620_SNP [dm3] 3R_14700898_SNP [dm6]	T	C	2.651e^-4	1	INTRON kibra	TF binding site mE1_TFBS_cad
3R	21611914	3R_21611914_SNP [dm3] 3R_25786192_SNP [dm6]	C	A	2.659e^-4	1	DOWNSTREAM CG4960 INTERGENIC
3L	1626413	3L_1626413_SNP [dm3] 3L_1626413_SNP [dm6]	A	C	2.667e^-4	1	UTR_3_PRIME CG13928 UPSTREAM GC INTRON GC
2R	8087999	2R_8087999_SNP [dm3] 2R_12200494_SNP [dm6]	G	A	2.673e^-4	1	SYNONYMOUS_CODING RpS11 UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	15288482	2L_15288482_SNP [dm3] 2L_15288482_SNP [dm6]	C	T	2.673e^-4	1	INTERGENIC
3L	13683188	3L_13683188_SNP [dm3] 3L_13690088_SNP [dm6]	G	A	2.679e^-4	1	INTRON bru-3
3L	2984309	3L_2984309_SNP [dm3] 3L_2984309_SNP [dm6]	T	C	2.680e^-4	1	DOWNSTREAM CG2107 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8112845	2R_8112845_SNP [dm3] 2R_12225340_SNP [dm6]	T	C	2.683e^-4	1	INTRON CG8854
3R	20524258	3R_20524258_SNP [dm3] 3R_24698536_SNP [dm6]	T	C	2.686e^-4	1	INTRON slo
X	17129071	X_17129071_SNP [dm3] X_17235038_SNP [dm6]	G	T	2.692e^-4	1	INTRON f
2L	7501547	2L_7501547_SNP [dm3] 2L_7501547_SNP [dm6]	G	C	2.706e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_cad
3L	16543554	3L_16543554_SNP [dm3] 3L_16550454_SNP [dm6]	G	A	2.706e^-4	1	INTERGENIC
3R	13361750	3R_13361750_SNP [dm3] 3R_17536028_SNP [dm6]	C	A	2.707e^-4	1	SPLICE_SITE_REGION P5cr-2 UTR_5_PRIME P5cr-2 DOWNSTREAM l_3_07882 INTRON P5cr-2
2R	16934490	2R_16934490_SNP [dm3] 2R_21046985_SNP [dm6]	G	A	2.710e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	918124	X_918124_SNP [dm3] X_1024091_SNP [dm6]	C	A	2.713e^-4	1	INTRON su_w[a]_ & 2 others
2L	7043986	2L_7043986_SNP [dm3] 2L_7043986_SNP [dm6]	G	A	2.716e^-4	1	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	11199373	X_11199373_SNP [dm3] X_11305340_SNP [dm6]	C	T	2.735e^-4	1	INTERGENIC
3R	10227591	3R_10227591_SNP [dm3] 3R_14401869_SNP [dm6]	A	T	2.741e^-4	1	INTRON cv-c
2R	8092572	2R_8092572_SNP [dm3] 2R_12205067_SNP [dm6]	C	T	2.742e^-4	1	INTERGENIC
2L	11414297	2L_11414297_SNP [dm3] 2L_11414297_SNP [dm6]	C	T	2.742e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	6686928	3R_6686928_SNP [dm3] 3R_10861206_SNP [dm6]	G	A	2.745e^-4	1	SYNONYMOUS_CODING CG6574	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26615294	3R_26615294_SNP [dm3] 3R_30789572_SNP [dm6]	T	A	2.748e^-4	1	DOWNSTREAM wts & 1 other INTERGENIC
3L	4242277	3L_4242277_SNP [dm3] 3L_4242277_SNP [dm6]	T	C	2.751e^-4	1	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	612104	3L_612104_SNP [dm3] 3L_612104_SNP [dm6]	T	C	2.762e^-4	1	INTERGENIC
2L	18688661	2L_18688661_SNP [dm3] 2L_18688661_SNP [dm6]	A	C	2.764e^-4	1	UTR_5_PRIME msl-1 UPSTREAM CG10336	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	20489142	2L_20489142_SNP [dm3] 2L_20489142_SNP [dm6]	T	C	2.772e^-4	1	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14646668	2R_14646668_SNP [dm3] 2R_18759163_SNP [dm6]	A	G	2.773e^-4	1	SYNONYMOUS_CODING Jabba
3L	18156034	3L_18156034_SNP [dm3] 3L_18162934_SNP [dm6]	T	G	2.804e^-4	1	UPSTREAM CG13699 INTERGENIC
2R	14889306	2R_14889306_SNP [dm3] 2R_19001801_SNP [dm6]	C	A	2.809e^-4	1	INTRON tn	TF binding site mE1_TFBS_HSA
2L	9538600	2L_9538600_SNP [dm3] 2L_9538600_SNP [dm6]	C	T	2.811e^-4	1	SYNONYMOUS_CODING Oatp30B
3R	5933432	3R_5933432_SNP [dm3] 3R_10107710_SNP [dm6]	T	G	2.812e^-4	1	INTRON Fmr1	TF binding site BDTNP1_TFBS_da
X	8286659	X_8286659_SNP [dm3] X_8392626_SNP [dm6]	G	A	2.820e^-4	1	INTERGENIC
3R	14342262	3R_14342262_SNP [dm3] 3R_18516540_SNP [dm6]	A	C	2.824e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	18912293	2L_18912293_SNP [dm3] 2L_18912293_SNP [dm6]	C	T	2.824e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8106248	2R_8106248_INS [dm3] 2R_12218743_INS [dm6]	G	GATG	2.827e^-4	1	INTERGENIC
3L	13727694	3L_13727694_SNP [dm3] 3L_13734594_SNP [dm6]	C	G	2.830e^-4	1	INTRON bru-3
2R	8096106	2R_8096106_SNP [dm3] 2R_12208601_SNP [dm6]	A	G	2.849e^-4	1	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4047994	2L_4047994_SNP [dm3] 2L_4047994_SNP [dm6]	T	A	2.850e^-4	1	INTRON ed	TF binding site mE1_TFBS_chinmo
2R	9937930	2R_9937930_SNP [dm3] 2R_14050425_SNP [dm6]	T	A	2.851e^-4	1	INTRON mam
2R	18236089	2R_18236089_SNP [dm3] 2R_22348584_SNP [dm6]	C	T	2.854e^-4	1	NON_SYNONYMOUS_CODING CG11298 INTRON Liprin-gamma
X	918217	X_918217_SNP [dm3] X_1024184_SNP [dm6]	C	A	2.864e^-4	1	INTRON su_w[a]_ & 2 others
2L	15641089	2L_15641089_SNP [dm3] 2L_15641089_SNP [dm6]	A	C	2.870e^-4	1	INTERGENIC
2L	6187048	2L_6187048_INS [dm3] 2L_6187048_INS [dm6]	G	GTG	2.874e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14125516	2R_14125516_SNP [dm3] 2R_18238011_SNP [dm6]	T	A	2.874e^-4	1	INTERGENIC
3R	19369158	3R_19369158_SNP [dm3] 3R_23543436_SNP [dm6]	T	C	2.878e^-4	1	INTERGENIC
3L	8439706	3L_8439706_SNP [dm3] 3L_8446606_SNP [dm6]	C	T	2.889e^-4	1	INTRON CG6983
2R	4191730	2R_4191730_SNP [dm3] 2R_8304225_SNP [dm6]	G	T	2.891e^-4	1	UPSTREAM CR44447 INTERGENIC
2L	17685078	2L_17685078_DEL [dm3] 2L_17685078_DEL [dm6]	TAGTTTAAATTTATTT...	T	2.911e^-4	1	INTRON CadN
2R	9888957	2R_9888957_SNP [dm3] 2R_14001452_SNP [dm6]	A	T	2.916e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9988325	3R_9988325_SNP [dm3] 3R_14162603_SNP [dm6]	A	T	2.919e^-4	1	UPSTREAM CG3199 INTERGENIC
2L	20242137	2L_20242137_SNP [dm3] 2L_20242137_SNP [dm6]	C	A	2.930e^-4	1	INTERGENIC
X	12837852	X_12837852_SNP [dm3] X_12943819_SNP [dm6]	C	T	2.937e^-4	1	INTRON fne
2L	8911235	2L_8911235_SNP [dm3] 2L_8911235_SNP [dm6]	G	A	2.956e^-4	1	INTRON CG34398
2L	4212424	2L_4212424_SNP [dm3] 2L_4212424_SNP [dm6]	C	T	2.959e^-4	1	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14889305	2R_14889305_SNP [dm3] 2R_19001800_SNP [dm6]	C	T	2.968e^-4	1	INTRON tn	TF binding site mE1_TFBS_HSA
2R	14273384	2R_14273384_SNP [dm3] 2R_18385879_SNP [dm6]	C	T	2.978e^-4	1	UPSTREAM CG15067 & 1 other DOWNSTREAM CG18107 INTERGENIC
2L	13842407	2L_13842407_SNP [dm3] 2L_13842407_SNP [dm6]	G	A	2.987e^-4	1	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	10519609	3R_10519609_SNP [dm3] 3R_14693887_SNP [dm6]	A	C	3.021e^-4	1	INTRON Meltrin	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12339739	2R_12339739_SNP [dm3] 2R_16452234_SNP [dm6]	T	C	3.023e^-4	1	INTERGENIC
3L	18831598	3L_18831598_SNP [dm3] 3L_18838498_SNP [dm6]	A	T	3.028e^-4	1	INTRON Indy	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15430637	2R_15430637_SNP [dm3] 2R_19543132_SNP [dm6]	A	G	3.041e^-4	1	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
X	12210598	X_12210598_SNP [dm3] X_12316565_SNP [dm6]	C	G	3.044e^-4	1	INTRON Ten-a
3R	25394829	3R_25394829_SNP [dm3] 3R_29569107_SNP [dm6]	A	T	3.044e^-4	1	INTERGENIC
3R	6652633	3R_6652633_DEL [dm3] 3R_10826911_DEL [dm6]	TT	T	3.045e^-4	1	UPSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	20703516	3R_20703516_SNP [dm3] 3R_24877794_SNP [dm6]	A	T	3.045e^-4	1	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11634825	3R_11634825_SNP [dm3] 3R_15809103_SNP [dm6]	C	G	3.051e^-4	1	INTRON alpha-Man-IIb
3R	25245740	3R_25245740_SNP [dm3] 3R_29420018_SNP [dm6]	G	T	3.054e^-4	1	INTRON Ptp99A
2L	1530784	2L_1530784_DEL [dm3] 2L_1530784_DEL [dm6]	AATTGAA	A	3.063e^-4	1	INTERGENIC
2L	11411471	2L_11411471_SNP [dm3] 2L_11411471_SNP [dm6]	C	T	3.064e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	11411472	2L_11411472_SNP [dm3] 2L_11411472_SNP [dm6]	T	C	3.064e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	6192014	3R_6192014_SNP [dm3] 3R_10366292_SNP [dm6]	T	G	3.068e^-4	1	INTRON Rfx
2R	17868705	2R_17868705_SNP [dm3] 2R_21981200_SNP [dm6]	T	G	3.069e^-4	1	DOWNSTREAM Gr58a INTERGENIC
3L	20515253	3L_20515253_INS [dm3] 3L_20522153_INS [dm6]	A	ATGTGTTTGATTTTA...	3.073e^-4	1	SPLICE_SITE_ACCEPTOR CG5104 DOWNSTREAM CG4825 INTRON CG5104	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	1530682	2L_1530682_SNP [dm3] 2L_1530682_SNP [dm6]	A	G	3.084e^-4	1	INTERGENIC
2R	11516718	2R_11516718_SNP [dm3] 2R_15629213_SNP [dm6]	C	G	3.090e^-4	1	INTRON CG42524
X	2176706	X_2176706_DEL [dm3] X_2282673_DEL [dm6]	CTATCGACGCCACAGAGACC...	C	3.092e^-4	1	INTRON CG2865	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11570026	3L_11570026_SNP [dm3] 3L_11576926_SNP [dm6]	A	G	3.106e^-4	1	UTR_5_PRIME CG33489 UPSTREAM CG33489 DOWNSTREAM CG33271
2R	18406749	2R_18406749_SNP [dm3] 2R_22519244_SNP [dm6]	T	C	3.113e^-4	1	INTRON px
3L	16674464	3L_16674464_SNP [dm3] 3L_16681364_SNP [dm6]	G	A	3.114e^-4	1	SYNONYMOUS_CODING Lasp UTR_5_PRIME CG43954	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11221113	2R_11221113_SNP [dm3] 2R_15333608_SNP [dm6]	T	A	3.115e^-4	1	SYNONYMOUS_CODING Hr51	TF binding site mE1_TFBS_chinmo
2L	8891979	2L_8891979_SNP [dm3] 2L_8891979_SNP [dm6]	T	C	3.118e^-4	1	UTR_3_PRIME CG42713 DOWNSTREAM CG42713
2R	4828797	2R_4828797_SNP [dm3] 2R_8941292_SNP [dm6]	A	G	3.121e^-4	1	UPSTREAM CR44273 DOWNSTREAM CG13748 INTERGENIC
3L	11828920	3L_11828920_SNP [dm3] 3L_11835820_SNP [dm6]	T	A	3.128e^-4	1	NON_SYNONYMOUS_CODING CG43064	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7262904	2R_7262904_SNP [dm3] 2R_11375399_SNP [dm6]	G	C	3.133e^-4	1	NON_SYNONYMOUS_CODING CG13203 START_GAINED CG13203 UTR_5_PRIME CG13203	TF binding site mE1_TFBS_chinmo
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	3.139e^-4	1	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
2L	7041385	2L_7041385_SNP [dm3] 2L_7041385_SNP [dm6]	C	A	3.141e^-4	1	UPSTREAM milt INTRON milt
X	9216500	X_9216500_SNP [dm3] X_9322467_SNP [dm6]	G	A	3.142e^-4	1	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_chinmo
3L	8859773	3L_8859773_SNP [dm3] 3L_8866673_SNP [dm6]	A	G	3.143e^-4	1	INTRON dally
3L	20337853	3L_20337853_DEL [dm3] 3L_20344753_DEL [dm6]	CC	C	3.148e^-4	1	UPSTREAM CR45385 DOWNSTREAM Spn77Bc & 1 other INTERGENIC
2R	3356245	2R_3356245_SNP [dm3] 2R_7468740_SNP [dm6]	C	A	3.155e^-4	1	INTRON Aldh-III
X	7080424	X_7080424_SNP [dm3] X_7186391_SNP [dm6]	T	C	3.171e^-4	1	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	10786078	3L_10786078_SNP [dm3] 3L_10792978_SNP [dm6]	A	T	3.172e^-4	1	INTERGENIC
2L	5949089	2L_5949089_DEL [dm3] 2L_5949089_DEL [dm6]	TGTCA	T	3.175e^-4	1	UPSTREAM CR44986 & 1 other DOWNSTREAM Gpdh INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	11037557	3L_11037557_SNP [dm3] 3L_11044457_SNP [dm6]	C	G	3.179e^-4	1	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2L	5511302	2L_5511302_SNP [dm3] 2L_5511302_SNP [dm6]	T	A	3.188e^-4	1	INTERGENIC
2L	8070156	2L_8070156_SNP [dm3] 2L_8070156_SNP [dm6]	C	T	3.207e^-4	1	SYNONYMOUS_CODING poe
2R	14645042	2R_14645042_SNP [dm3] 2R_18757537_SNP [dm6]	A	T	3.209e^-4	1	DOWNSTREAM Jabba & 1 other INTRON Jabba
3R	6684416	3R_6684416_SNP [dm3] 3R_10858694_SNP [dm6]	T	C	3.231e^-4	1	NON_SYNONYMOUS_CODING CG14694 DOWNSTREAM CG4570	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13731072	3L_13731072_SNP [dm3] 3L_13737972_SNP [dm6]	T	C	3.232e^-4	1	INTRON bru-3
3L	1673444	3L_1673444_SNP [dm3] 3L_1673444_SNP [dm6]	C	A	3.234e^-4	1	UPSTREAM CG13930 INTERGENIC
2L	8976191	2L_8976191_DEL [dm3] 2L_8976191_DEL [dm6]	TG	C	3.245e^-4	1	UPSTREAM CG9541 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13623907	3L_13623907_SNP [dm3] 3L_13630807_SNP [dm6]	C	T	3.245e^-4	1	INTRON bru-3
2L	10706394	2L_10706394_SNP [dm3] 2L_10706394_SNP [dm6]	G	C	3.253e^-4	1	UPSTREAM Lip2 INTRON Lip2	TF binding site mE1_TFBS_inv
3R	7445788	3R_7445788_SNP [dm3] 3R_11620066_SNP [dm6]	T	A	3.257e^-4	1	UPSTREAM CG14710 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26615415	3R_26615415_SNP [dm3] 3R_30789693_SNP [dm6]	T	C	3.264e^-4	1	UTR_3_PRIME wts DOWNSTREAM zfh1
2L	9289490	2L_9289490_SNP [dm3] 2L_9289490_SNP [dm6]	C	T	3.267e^-4	1	INTRON Ggamma30A
3R	2167567	3R_2167567_SNP [dm3] 3R_6341845_SNP [dm6]	T	C	3.269e^-4	1	UPSTREAM CG17917 DOWNSTREAM Osi20 INTERGENIC
2R	15396172	2R_15396172_SNP [dm3] 2R_19508667_SNP [dm6]	T	C	3.272e^-4	1	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16934517	2R_16934517_SNP [dm3] 2R_21047012_SNP [dm6]	G	C	3.272e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2836781	2L_2836781_SNP [dm3] 2L_2836781_SNP [dm6]	A	T	3.283e^-4	1	INTRON CG3119
2L	11430020	2L_11430020_SNP [dm3] 2L_11430020_SNP [dm6]	C	G	3.293e^-4	1	INTERGENIC
2L	7046231	2L_7046231_INS [dm3] 2L_7046231_INS [dm6]	A	ACACA	3.308e^-4	1	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5442183	3L_5442183_SNP [dm3] 3L_5449083_SNP [dm6]	C	T	3.310e^-4	1	INTERGENIC
2L	1023724	2L_1023724_SNP [dm3] 2L_1023724_SNP [dm6]	C	T	3.312e^-4	1	INTRON IA-2
3L	4242680	3L_4242680_SNP [dm3] 3L_4242680_SNP [dm6]	A	T	3.316e^-4	1	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	11430066	2L_11430066_SNP [dm3] 2L_11430066_SNP [dm6]	T	C	3.316e^-4	1	INTERGENIC
2R	14649710	2R_14649710_SNP [dm3] 2R_18762205_SNP [dm6]	T	C	3.321e^-4	1	UTR_5_PRIME Mctp
3R	24702186	3R_24702186_SNP [dm3] 3R_28876464_SNP [dm6]	A	G	3.324e^-4	1	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1460785	3L_1460785_SNP [dm3] 3L_1460785_SNP [dm6]	C	A	3.329e^-4	1	INTRON Ptp61F EXON CR44842	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13222865	3L_13222865_SNP [dm3] 3L_13229765_SNP [dm6]	G	T	3.332e^-4	1	INTRON caps
2L	8035670	2L_8035670_SNP [dm3] 2L_8035670_SNP [dm6]	T	C	3.335e^-4	1	INTRON CG7367 & 1 other
2R	14804469	2R_14804469_SNP [dm3] 2R_18916964_SNP [dm6]	C	A	3.350e^-4	1	INTRON sano
3R	6539726	3R_6539726_INS [dm3] 3R_10714004_INS [dm6]	T	TC	3.351e^-4	1	UPSTREAM CG4073 INTERGENIC
3L	1281832	3L_1281832_SNP [dm3] 3L_1281832_SNP [dm6]	C	T	3.358e^-4	1	INTRON CG32333
2L	18511162	2L_18511162_SNP [dm3] 2L_18511162_SNP [dm6]	A	C	3.364e^-4	1	INTRON CG10178
2L	11430079	2L_11430079_SNP [dm3] 2L_11430079_SNP [dm6]	T	A	3.369e^-4	1	INTERGENIC
2L	8223281	2L_8223281_SNP [dm3] 2L_8223281_SNP [dm6]	G	C	3.378e^-4	1	SYNONYMOUS_CODING Pvr
2L	11415098	2L_11415098_SNP [dm3] 2L_11415098_SNP [dm6]	T	G	3.379e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	12973901	3L_12973901_MNP [dm3] 3L_12980801_MNP [dm6]	CCTCCA	TGGAGG	3.406e^-4	1	INTERGENIC
2R	20583451	2R_20583451_DEL [dm3] 2R_24695928_DEL [dm6]	TAT	T	3.411e^-4	1	UTR_3_PRIME Mid1
2L	6053946	2L_6053946_SNP [dm3] 2L_6053946_SNP [dm6]	C	A	3.415e^-4	1	UPSTREAM CG13995 DOWNSTREAM CG9135 INTERGENIC
3L	13223255	3L_13223255_SNP [dm3] 3L_13230155_SNP [dm6]	T	A	3.434e^-4	1	INTRON caps
3R	4125191	3R_4125191_SNP [dm3] 3R_8299469_SNP [dm6]	T	C	3.440e^-4	1	NON_SYNONYMOUS_CODING CG9626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	15721120	2R_15721120_SNP [dm3] 2R_19833615_SNP [dm6]	G	A	3.447e^-4	1	DOWNSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10355035	2L_10355035_SNP [dm3] 2L_10355035_SNP [dm6]	A	G	3.465e^-4	1	INTRON CG5367
2L	15649388	2L_15649388_SNP [dm3] 2L_15649388_SNP [dm6]	T	G	3.478e^-4	1	INTRON CG4587
2L	7043142	2L_7043142_SNP [dm3] 2L_7043142_SNP [dm6]	C	T	3.483e^-4	1	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20138004	2L_20138004_SNP [dm3] 2L_20138004_SNP [dm6]	T	C	3.494e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9836989	2R_9836989_SNP [dm3] 2R_13949484_SNP [dm6]	C	T	3.498e^-4	1	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21633611	3R_21633611_SNP [dm3] 3R_25807889_SNP [dm6]	A	G	3.501e^-4	1	UPSTREAM CR45652 DOWNSTREAM BG642167 INTERGENIC
2L	8329319	2L_8329319_SNP [dm3] 2L_8329319_SNP [dm6]	G	T	3.519e^-4	1	INTRON CG14275
X	16805397	X_16805397_SNP [dm3] X_16911364_SNP [dm6]	G	A	3.519e^-4	1	INTRON CR44754
2R	14886112	2R_14886112_SNP [dm3] 2R_18998607_SNP [dm6]	G	T	3.520e^-4	1	NON_SYNONYMOUS_CODING tn INTRON tn
3L	9835051	3L_9835051_SNP [dm3] 3L_9841951_SNP [dm6]	G	C	3.522e^-4	1	INTRON RasGAP1
3L	12504493	3L_12504493_SNP [dm3] 3L_12511393_SNP [dm6]	C	A	3.524e^-4	1	NON_SYNONYMOUS_CODING sti	TF binding site mE1_TFBS_sens
3R	26782268	3R_26782268_SNP [dm3] 3R_30956546_SNP [dm6]	A	T	3.548e^-4	1	INTERGENIC
3R	17525861	3R_17525861_SNP [dm3] 3R_21700139_SNP [dm6]	A	C	3.549e^-4	1	INTRON CG31176
3R	10115792	3R_10115792_SNP [dm3] 3R_14290070_SNP [dm6]	T	A	3.550e^-4	1	UPSTREAM CG12207 INTRON CG12207	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15224236	2L_15224236_SNP [dm3] 2L_15224236_SNP [dm6]	T	C	3.555e^-4	1	INTERGENIC
3R	19369116	3R_19369116_SNP [dm3] 3R_23543394_SNP [dm6]	A	G	3.564e^-4	1	INTERGENIC
3R	8134430	3R_8134430_SNP [dm3] 3R_12308708_SNP [dm6]	C	A	3.571e^-4	1	INTERGENIC
2L	13669742	2L_13669742_SNP [dm3] 2L_13669742_SNP [dm6]	C	T	3.576e^-4	1	SYNONYMOUS_CODING CG18507 INTRON CG18507
2L	13842418	2L_13842418_SNP [dm3] 2L_13842418_SNP [dm6]	A	G	3.577e^-4	1	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3L	2695138	3L_2695138_SNP [dm3] 3L_2695138_SNP [dm6]	A	G	3.587e^-4	1	INTRON Fife
2R	3909130	2R_3909130_SNP [dm3] 2R_8021625_SNP [dm6]	C	T	3.590e^-4	1	EXON CR45267	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	12004205	X_12004205_SNP [dm3] X_12110172_SNP [dm6]	G	A	3.607e^-4	1	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
2R	12153479	2R_12153479_SNP [dm3] 2R_16265974_SNP [dm6]	G	T	3.617e^-4	1	NON_SYNONYMOUS_CODING csul DOWNSTREAM Khc
2L	7042113	2L_7042113_SNP [dm3] 2L_7042113_SNP [dm6]	A	T	3.622e^-4	1	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1047383	2L_1047383_INS [dm3] 2L_1047383_INS [dm6]	G	GTTGATATTG	3.623e^-4	1	INTRON IA-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16805396	X_16805396_SNP [dm3] X_16911363_SNP [dm6]	G	A	3.628e^-4	1	INTRON CR44754
2L	6532806	2L_6532806_SNP [dm3] 2L_6532806_SNP [dm6]	G	T	3.638e^-4	1	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10227723	3R_10227723_SNP [dm3] 3R_14402001_SNP [dm6]	C	G	3.642e^-4	1	INTRON cv-c
3R	6094882	3R_6094882_SNP [dm3] 3R_10269160_SNP [dm6]	C	T	3.652e^-4	1	INTRON CG43143
2L	8903575	2L_8903575_SNP [dm3] 2L_8903575_SNP [dm6]	T	C	3.653e^-4	1	INTRON CG34398
2L	8976174	2L_8976174_DEL [dm3] 2L_8976174_DEL [dm6]	TTT	T	3.670e^-4	1	UPSTREAM CG9541 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2787642	3L_2787642_SNP [dm3] 3L_2787642_SNP [dm6]	A	T	3.671e^-4	1	UTR_3_PRIME CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14082034	X_14082034_INS [dm3] X_14188001_INS [dm6]	T	TT	3.681e^-4	1	DOWNSTREAM CG12481 INTERGENIC
3L	11272015	3L_11272015_SNP [dm3] 3L_11278915_SNP [dm6]	C	A	3.683e^-4	1	INTERGENIC
2L	396497	2L_396497_SNP [dm3] 2L_396497_SNP [dm6]	C	G	3.685e^-4	1	DOWNSTREAM CG4213 EXON CR43718	TF binding site mE1_TFBS_cad
3R	9727121	3R_9727121_SNP [dm3] 3R_13901399_SNP [dm6]	C	T	3.689e^-4	1	UPSTREAM ems INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12504068	2R_12504068_SNP [dm3] 2R_16616563_SNP [dm6]	G	T	3.689e^-4	1	INTRON CG5065
3R	27099079	3R_27099079_SNP [dm3] 3R_31273357_SNP [dm6]	A	C	3.690e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14853784	2R_14853784_SNP [dm3] 2R_18966279_SNP [dm6]	G	A	3.698e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8894401	2L_8894401_SNP [dm3] 2L_8894401_SNP [dm6]	G	C	3.701e^-4	1	INTERGENIC
3R	18745433	3R_18745433_INS [dm3] 3R_22919711_INS [dm6]	A	AGCACACACA	3.708e^-4	1	INTRON klg
2R	3346329	2R_3346329_SNP [dm3] 2R_7458824_SNP [dm6]	A	G	3.712e^-4	1	UTR_5_PRIME Inos DOWNSTREAM CG11141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	8077706	2R_8077706_SNP [dm3] 2R_12190201_SNP [dm6]	G	T	3.737e^-4	1	SYNONYMOUS_CODING Cyp6g2 UPSTREAM Cyp6t3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20451502	3R_20451502_SNP [dm3] 3R_24625780_SNP [dm6]	A	G	3.754e^-4	1	UTR_5_PRIME atl UPSTREAM Syx18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14642174	2L_14642174_SNP [dm3] 2L_14642174_SNP [dm6]	A	T	3.758e^-4	1	INTRON osp
3R	8125246	3R_8125246_SNP [dm3] 3R_12299524_SNP [dm6]	A	C	3.761e^-4	1	INTRON svp	TF binding site mE1_TFBS_cad
3R	8125247	3R_8125247_DEL [dm3] 3R_12299525_DEL [dm6]	AC	A	3.761e^-4	1	INTRON svp	TF binding site mE1_TFBS_cad
3L	8866515	3L_8866515_SNP [dm3] 3L_8873415_SNP [dm6]	A	G	3.764e^-4	1	INTRON dally	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7755701	2L_7755701_SNP [dm3] 2L_7755701_SNP [dm6]	G	A	3.764e^-4	1	UPSTREAM CG14538 INTRON CG7196
2R	14860351	2R_14860351_DEL [dm3] 2R_18972846_DEL [dm6]	ACT	A	3.775e^-4	1	UTR_5_PRIME Topors UPSTREAM Topors & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	15381439	2R_15381439_INS [dm3] 2R_19493934_INS [dm6]	A	ATTTT	3.776e^-4	1	UTR_3_PRIME Rep DOWNSTREAM hpo
2L	8892025	2L_8892025_SNP [dm3] 2L_8892025_SNP [dm6]	A	G	3.779e^-4	1	UTR_3_PRIME CG42713 DOWNSTREAM CG42713
2R	17868651	2R_17868651_SNP [dm3] 2R_21981146_SNP [dm6]	G	A	3.795e^-4	1	DOWNSTREAM Gr58a INTERGENIC
2L	2940137	2L_2940137_SNP [dm3] 2L_2940137_SNP [dm6]	T	C	3.801e^-4	1	INTRON lilli
2R	18816118	2R_18816118_SNP [dm3] 2R_22928595_SNP [dm6]	A	G	3.810e^-4	1	UPSTREAM CG42678 DOWNSTREAM CG42678 INTRON CG42678
3R	25627821	3R_25627821_SNP [dm3] 3R_29802099_SNP [dm6]	C	G	3.813e^-4	1	SYNONYMOUS_CODING CG7834 DOWNSTREAM Ice	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	18488211	3L_18488211_SNP [dm3] 3L_18495111_SNP [dm6]	C	A	3.815e^-4	1	INTRON AstC-R2
3R	3864818	3R_3864818_SNP [dm3] 3R_8039096_SNP [dm6]	T	A	3.816e^-4	1	EXON CR44936	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
3L	12315782	3L_12315782_SNP [dm3] 3L_12322682_SNP [dm6]	C	T	3.821e^-4	1	INTERGENIC
3L	17820739	3L_17820739_SNP [dm3] 3L_17827639_SNP [dm6]	A	T	3.830e^-4	1	INTRON Grd
3R	25903009	3R_25903009_SNP [dm3] 3R_30077287_SNP [dm6]	T	C	3.844e^-4	1	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15401201	2L_15401201_SNP [dm3] 2L_15401201_SNP [dm6]	G	A	3.846e^-4	1	UPSTREAM CR45374 INTERGENIC
X	920559	X_920559_SNP [dm3] X_1026526_SNP [dm6]	A	G	3.850e^-4	1	UTR_5_PRIME CG32814 & 1 other UPSTREAM CG3021 INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5661096	3L_5661096_SNP [dm3] 3L_5667996_SNP [dm6]	C	A	3.852e^-4	1	INTRON sif
2L	13841512	2L_13841512_SNP [dm3] 2L_13841512_SNP [dm6]	T	G	3.855e^-4	1	UTR_5_PRIME CG33307 INTRON CenG1A
2R	17239211	2R_17239211_SNP [dm3] 2R_21351706_SNP [dm6]	A	G	3.866e^-4	1	INTERGENIC
2L	2616563	2L_2616563_SNP [dm3] 2L_2616563_SNP [dm6]	A	T	3.867e^-4	1	INTERGENIC
3L	1454183	3L_1454183_SNP [dm3] 3L_1454183_SNP [dm6]	C	T	3.868e^-4	1	INTRON Ptp61F
3L	11032921	3L_11032921_SNP [dm3] 3L_11039821_SNP [dm6]	C	T	3.868e^-4	1	SYNONYMOUS_CODING CG43693 INTRON CG43693
2R	8179622	2R_8179622_SNP [dm3] 2R_12292117_SNP [dm6]	T	C	3.870e^-4	1	INTRON CG42700
3R	9876627	3R_9876627_SNP [dm3] 3R_14050905_SNP [dm6]	G	A	3.886e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7725239	3R_7725239_SNP [dm3] 3R_11899517_SNP [dm6]	T	G	3.889e^-4	1	INTRON Cad87A
3R	10227587	3R_10227587_SNP [dm3] 3R_14401865_SNP [dm6]	T	A	3.897e^-4	1	INTRON cv-c
2L	8906457	2L_8906457_SNP [dm3] 2L_8906457_SNP [dm6]	G	T	3.897e^-4	1	INTRON CG34398
2R	8095966	2R_8095966_SNP [dm3] 2R_12208461_SNP [dm6]	G	A	3.897e^-4	1	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2R	7262909	2R_7262909_SNP [dm3] 2R_11375404_SNP [dm6]	C	A	3.899e^-4	1	NON_SYNONYMOUS_CODING CG13203 UTR_5_PRIME CG13203	TF binding site mE1_TFBS_chinmo
2L	15863722	2L_15863722_SNP [dm3] 2L_15863722_SNP [dm6]	A	T	3.935e^-4	1	DOWNSTREAM CR42791 INTERGENIC
2L	15194068	2L_15194068_SNP [dm3] 2L_15194068_SNP [dm6]	T	G	3.945e^-4	1	INTRON CG4168
2L	15863712	2L_15863712_SNP [dm3] 2L_15863712_SNP [dm6]	T	A	3.948e^-4	1	DOWNSTREAM CR42791 INTERGENIC
X	14540418	X_14540418_SNP [dm3] X_14646385_SNP [dm6]	A	T	3.950e^-4	1	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24880186	3R_24880186_SNP [dm3] 3R_29054464_SNP [dm6]	G	C	3.972e^-4	1	UTR_5_PRIME CG11843 UPSTREAM CG11843 DOWNSTREAM CG11842	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25627812	3R_25627812_SNP [dm3] 3R_29802090_SNP [dm6]	A	G	3.974e^-4	1	SYNONYMOUS_CODING CG7834 DOWNSTREAM Ice	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	8976164	2L_8976164_SNP [dm3] 2L_8976164_SNP [dm6]	T	A	3.981e^-4	1	UPSTREAM CG9541 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15326881	2R_15326881_SNP [dm3] 2R_19439376_SNP [dm6]	G	T	3.982e^-4	1	SPLICE_SITE_REGION Spt5 INTRON Spt5
X	12837814	X_12837814_SNP [dm3] X_12943781_SNP [dm6]	T	C	3.984e^-4	1	INTRON fne
3L	18491705	3L_18491705_SNP [dm3] 3L_18498605_SNP [dm6]	T	C	3.984e^-4	1	INTRON AstC-R2
3R	21672251	3R_21672251_INS [dm3] 3R_25846529_INS [dm6]	A	ATAAATAAATACAATACAAT...	3.999e^-4	1	UPSTREAM CR45655 DOWNSTREAM CR45656 & 1 other INTERGENIC
2L	5870927	2L_5870927_DEL [dm3] 2L_5870927_DEL [dm6]	TT	G	4.014e^-4	1	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6080248	3R_6080248_SNP [dm3] 3R_10254526_SNP [dm6]	G	A	4.018e^-4	1	SYNONYMOUS_CODING CG3999 DOWNSTREAM Sirt6	TF binding site mE1_TFBS_sens
2R	7072443	2R_7072443_SNP [dm3] 2R_11184938_SNP [dm6]	G	T	4.018e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2695137	3L_2695137_SNP [dm3] 3L_2695137_SNP [dm6]	T	A	4.020e^-4	1	INTRON Fife
3R	10261284	3R_10261284_SNP [dm3] 3R_14435562_SNP [dm6]	C	A	4.027e^-4	1	INTRON cv-c
2R	15381433	2R_15381433_DEL [dm3] 2R_19493928_DEL [dm6]	TACA	T	4.028e^-4	1	UTR_3_PRIME Rep DOWNSTREAM hpo
2L	13807461	2L_13807461_SNP [dm3] 2L_13807461_SNP [dm6]	T	C	4.039e^-4	1	DOWNSTREAM adat INTRON CAH1
2L	6532800	2L_6532800_SNP [dm3] 2L_6532800_SNP [dm6]	T	C	4.039e^-4	1	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6684624	2R_6684624_SNP [dm3] 2R_10797119_SNP [dm6]	G	A	4.041e^-4	1	INTRON CG33144
3R	8867428	3R_8867428_SNP [dm3] 3R_13041706_SNP [dm6]	A	T	4.045e^-4	1	UTR_5_PRIME snk UPSTREAM CG11670
X	4561367	X_4561367_SNP [dm3] X_4667334_SNP [dm6]	G	A	4.051e^-4	1	UTR_3_PRIME rap UPSTREAM CG3009	TF binding site mE1_TFBS_bab1
2L	1544050	2L_1544050_SNP [dm3] 2L_1544050_SNP [dm6]	T	C	4.063e^-4	1	INTERGENIC
3L	17409637	3L_17409637_SNP [dm3] 3L_17416537_SNP [dm6]	C	T	4.068e^-4	1	UPSTREAM blot INTRON blot	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26910750	3R_26910750_SNP [dm3] 3R_31085028_SNP [dm6]	T	G	4.070e^-4	1	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	13415359	3R_13415359_SNP [dm3] 3R_17589637_SNP [dm6]	G	A	4.073e^-4	1	INTERGENIC
3R	26100336	3R_26100336_SNP [dm3] 3R_30274614_SNP [dm6]	C	T	4.079e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	2984310	3L_2984310_SNP [dm3] 3L_2984310_SNP [dm6]	A	C	4.080e^-4	1	DOWNSTREAM CG2107 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13502167	2R_13502167_SNP [dm3] 2R_17614662_SNP [dm6]	T	A	4.092e^-4	1	INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	18684237	2L_18684237_SNP [dm3] 2L_18684237_SNP [dm6]	G	A	4.092e^-4	1	UTR_3_PRIME msl-1 DOWNSTREAM CG31751 & 1 other
2R	9251833	2R_9251833_DEL [dm3] 2R_13364328_DEL [dm6]	CACA	C	4.100e^-4	1	INTERGENIC
2R	14643414	2R_14643414_SNP [dm3] 2R_18755909_SNP [dm6]	A	T	4.103e^-4	1	INTRON Cyp12b2
2L	18404418	2L_18404418_SNP [dm3] 2L_18404418_SNP [dm6]	G	A	4.104e^-4	1	EXON CR44487
3R	17526861	3R_17526861_SNP [dm3] 3R_21701139_SNP [dm6]	A	G	4.105e^-4	1	INTRON CG31176
2R	2402940	2R_2402940_SNP [dm3] 2R_6515435_SNP [dm6]	A	G	4.109e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18208322	3L_18208322_SNP [dm3] 3L_18215222_SNP [dm6]	A	T	4.118e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	13241254	2L_13241254_SNP [dm3] 2L_13241254_SNP [dm6]	A	G	4.147e^-4	1	UPSTREAM CR45330 INTRON CG5945	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	19339263	2R_19339263_DEL [dm3] 2R_23451740_DEL [dm6]	GT	C	4.161e^-4	1	INTRON CG43795
3L	16298023	3L_16298023_SNP [dm3] 3L_16304923_SNP [dm6]	C	T	4.161e^-4	1	DOWNSTREAM CG13043 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5653998	3L_5653998_SNP [dm3] 3L_5660898_SNP [dm6]	A	G	4.165e^-4	1	SYNONYMOUS_CODING Sse INTRON sif
3L	18155916	3L_18155916_SNP [dm3] 3L_18162816_SNP [dm6]	G	A	4.173e^-4	1	UPSTREAM CG13699 INTERGENIC
3R	9810899	3R_9810899_SNP [dm3] 3R_13985177_SNP [dm6]	G	A	4.174e^-4	1	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	11579562	X_11579562_SNP [dm3] X_11685529_SNP [dm6]	C	T	4.180e^-4	1	INTRON bif	TF binding site BDTNP1_TFBS_dl
X	19888522	X_19888522_SNP [dm3] X_19994489_SNP [dm6]	G	C	4.182e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	4214274	2R_4214274_SNP [dm3] 2R_8326769_SNP [dm6]	A	C	4.183e^-4	1	UPSTREAM pdm3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	15407790	2L_15407790_SNP [dm3] 2L_15407790_SNP [dm6]	C	T	4.190e^-4	1	INTERGENIC
2L	16248095	2L_16248095_INS [dm3] 2L_16248095_INS [dm6]	A	ATTA	4.191e^-4	1	INTRON PRL-1
3R	13416083	3R_13416083_SNP [dm3] 3R_17590361_SNP [dm6]	G	A	4.191e^-4	1	INTERGENIC
2R	13121386	2R_13121386_SNP [dm3] 2R_17233881_SNP [dm6]	T	C	4.193e^-4	1	INTRON mbl
2L	16087163	2L_16087163_SNP [dm3] 2L_16087163_SNP [dm6]	G	A	4.199e^-4	1	INTERGENIC
3R	10999226	3R_10999226_SNP [dm3] 3R_15173504_SNP [dm6]	G	T	4.205e^-4	1	DOWNSTREAM Mf INTRON Mf & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19324274	3R_19324274_SNP [dm3] 3R_23498552_SNP [dm6]	G	A	4.225e^-4	1	INTERGENIC
3R	11507832	3R_11507832_SNP [dm3] 3R_15682110_SNP [dm6]	A	C	4.230e^-4	1	INTRON pxb
3L	18563073	3L_18563073_SNP [dm3] 3L_18569973_SNP [dm6]	T	C	4.231e^-4	1	INTRON AstC-R1
2L	7036842	2L_7036842_SNP [dm3] 2L_7036842_SNP [dm6]	C	T	4.231e^-4	1	SYNONYMOUS_CODING CG11266 UTR_3_PRIME CG11266 UPSTREAM milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5949096	2L_5949096_INS [dm3] 2L_5949096_INS [dm6]	T	TGTGGATCT	4.233e^-4	1	UPSTREAM CR44986 & 1 other DOWNSTREAM Gpdh INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
X	12004124	X_12004124_SNP [dm3] X_12110091_SNP [dm6]	G	T	4.250e^-4	1	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_sens
3L	19359143	3L_19359143_SNP [dm3] 3L_19366043_SNP [dm6]	C	T	4.257e^-4	1	INTRON CG32206	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6977471	3L_6977471_SNP [dm3] 3L_6984371_SNP [dm6]	G	C	4.263e^-4	1	NON_SYNONYMOUS_CODING CG32388 UTR_5_PRIME CG43439
X	9845453	X_9845453_SNP [dm3] X_9951420_SNP [dm6]	C	T	4.265e^-4	1	INTERGENIC
2R	10166785	2R_10166785_SNP [dm3] 2R_14279280_SNP [dm6]	C	T	4.278e^-4	1	START_GAINED Ih UTR_5_PRIME Ih
3L	4244389	3L_4244389_SNP [dm3] 3L_4244389_SNP [dm6]	C	T	4.285e^-4	1	SYNONYMOUS_CODING pav	TF binding site mE1_TFBS_sens
3R	20451472	3R_20451472_SNP [dm3] 3R_24625750_SNP [dm6]	T	A	4.288e^-4	1	UTR_5_PRIME atl UPSTREAM Syx18	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10706314	2L_10706314_SNP [dm3] 2L_10706314_SNP [dm6]	T	C	4.305e^-4	1	UPSTREAM Lip2 INTRON Lip2	TF binding site mE1_TFBS_inv
2L	11418569	2L_11418569_SNP [dm3] 2L_11418569_SNP [dm6]	A	C	4.307e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13394580	2R_13394580_INS [dm3] 2R_17507075_INS [dm6]	A	AT	4.309e^-4	1	UTR_3_PRIME CG43164 INTRON CG43164
2L	17352063	2L_17352063_SNP [dm3] 2L_17352063_SNP [dm6]	G	A	4.321e^-4	1	INTERGENIC
2R	13394547	2R_13394547_SNP [dm3] 2R_17507042_SNP [dm6]	T	C	4.322e^-4	1	UTR_3_PRIME CG43164 INTRON CG43164
2L	7852194	2L_7852194_SNP [dm3] 2L_7852194_SNP [dm6]	A	T	4.325e^-4	1	INTRON CG14535
2R	9251808	2R_9251808_SNP [dm3] 2R_13364303_SNP [dm6]	C	T	4.344e^-4	1	INTERGENIC
2R	13873875	2R_13873875_SNP [dm3] 2R_17986370_SNP [dm6]	T	A	4.360e^-4	1	INTRON dpr13
3R	21535964	3R_21535964_SNP [dm3] 3R_25710242_SNP [dm6]	G	A	4.367e^-4	1	INTRON LpR2
X	9216506	X_9216506_SNP [dm3] X_9322473_SNP [dm6]	C	T	4.389e^-4	1	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_chinmo
X	17654512	X_17654512_SNP [dm3] X_17760479_SNP [dm6]	C	T	4.396e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16640847	X_16640847_SNP [dm3] X_16746814_SNP [dm6]	T	G	4.406e^-4	1	UPSTREAM CG9634 INTRON CG9634
2R	12163939	2R_12163939_SNP [dm3] 2R_16276434_SNP [dm6]	A	C	4.408e^-4	1	NON_SYNONYMOUS_CODING CG33017
2R	12237613	2R_12237613_SNP [dm3] 2R_16350108_SNP [dm6]	G	A	4.420e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1628272	2L_1628272_SNP [dm3] 2L_1628272_SNP [dm6]	A	T	4.422e^-4	1	INTERGENIC
2R	9251825	2R_9251825_SNP [dm3] 2R_13364320_SNP [dm6]	G	A	4.432e^-4	1	INTERGENIC
X	14235409	X_14235409_SNP [dm3] X_14341376_SNP [dm6]	C	A	4.440e^-4	1	INTRON dpr8
2R	9251822	2R_9251822_SNP [dm3] 2R_13364317_SNP [dm6]	C	T	4.445e^-4	1	INTERGENIC
3L	1461467	3L_1461467_SNP [dm3] 3L_1461467_SNP [dm6]	C	T	4.448e^-4	1	INTRON Ptp61F EXON CR44842	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14667074	2R_14667074_DEL [dm3] 2R_18779569_DEL [dm6]	TCC	T	4.450e^-4	1	INTERGENIC
3R	11653311	3R_11653311_SNP [dm3] 3R_15827589_SNP [dm6]	A	G	4.461e^-4	1	INTRON rec & 1 other
3L	5629439	3L_5629439_SNP [dm3] 3L_5636339_SNP [dm6]	G	T	4.461e^-4	1	UTR_5_PRIME Blimp-1 INTRON Blimp-1
3R	17000446	3R_17000446_SNP [dm3] 3R_21174724_SNP [dm6]	T	C	4.470e^-4	1	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15437050	2L_15437050_SNP [dm3] 2L_15437050_SNP [dm6]	A	T	4.471e^-4	1	DOWNSTREAM CR44861 INTERGENIC
2R	8110983	2R_8110983_DEL [dm3] 2R_12223478_DEL [dm6]	CT	A	4.473e^-4	1	DOWNSTREAM CG8854 INTERGENIC
3R	10267410	3R_10267410_INS [dm3] 3R_14441688_INS [dm6]	T	TCTGCCT	4.475e^-4	1	INTRON cv-c
2R	15326917	2R_15326917_DEL [dm3] 2R_19439412_DEL [dm6]	ACG	A	4.479e^-4	1	INTRON Spt5
X	17620737	X_17620737_SNP [dm3] X_17726704_SNP [dm6]	G	C	4.481e^-4	1	INTRON CG42684
2L	10012801	2L_10012801_SNP [dm3] 2L_10012801_SNP [dm6]	G	C	4.495e^-4	1	UTR_3_PRIME Trp1 DOWNSTREAM Trp1 & 1 other
3R	8142791	3R_8142791_SNP [dm3] 3R_12317069_SNP [dm6]	C	T	4.500e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	9968957	2R_9968957_SNP [dm3] 2R_14081452_SNP [dm6]	G	A	4.501e^-4	1	INTRON Prosap
3L	13604492	3L_13604492_SNP [dm3] 3L_13611392_SNP [dm6]	G	T	4.506e^-4	1	INTRON bru-3
2R	13864531	2R_13864531_SNP [dm3] 2R_17977026_SNP [dm6]	T	A	4.525e^-4	1	INTRON dpr13
3R	8511590	3R_8511590_SNP [dm3] 3R_12685868_SNP [dm6]	T	C	4.536e^-4	1	INTRON kar	TF binding site mE1_TFBS_cad
3L	11946869	3L_11946869_DEL [dm3] 3L_11953769_DEL [dm6]	CAT	C	4.541e^-4	1	UPSTREAM CG7248 & 1 other INTERGENIC
3L	824633	3L_824633_SNP [dm3] 3L_824633_SNP [dm6]	C	T	4.550e^-4	1	INTERGENIC
3R	5963331	3R_5963331_SNP [dm3] 3R_10137609_SNP [dm6]	A	C	4.556e^-4	1	INTRON tws	TF binding site mE1_TFBS_bab1
3L	4242659	3L_4242659_SNP [dm3] 3L_4242659_SNP [dm6]	G	C	4.556e^-4	1	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	18492648	3L_18492648_SNP [dm3] 3L_18499548_SNP [dm6]	G	C	4.577e^-4	1	INTRON AstC-R2
X	8278714	X_8278714_SNP [dm3] X_8384681_SNP [dm6]	A	G	4.580e^-4	1	INTERGENIC
2R	8078685	2R_8078685_SNP [dm3] 2R_12191180_SNP [dm6]	G	A	4.582e^-4	1	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3R	22237128	3R_22237128_SNP [dm3] 3R_26411406_SNP [dm6]	C	A	4.582e^-4	1	INTERGENIC
3L	2028470	3L_2028470_SNP [dm3] 3L_2028470_SNP [dm6]	C	A	4.584e^-4	1	DOWNSTREAM CG34259 INTERGENIC
3L	824644	3L_824644_SNP [dm3] 3L_824644_SNP [dm6]	C	T	4.588e^-4	1	INTERGENIC
X	11752845	X_11752845_SNP [dm3] X_11858812_SNP [dm6]	A	C	4.589e^-4	1	INTRON ATP7	TF binding site mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA
3L	10791100	3L_10791100_SNP [dm3] 3L_10798000_SNP [dm6]	C	T	4.590e^-4	1	INTERGENIC
3R	13202558	3R_13202558_SNP [dm3] 3R_17376836_SNP [dm6]	T	C	4.600e^-4	1	SYNONYMOUS_CODING Brf
X	3142477	X_3142477_SNP [dm3] X_3248444_SNP [dm6]	G	T	4.608e^-4	1	DOWNSTREAM Pig1 INTRON dnc
3R	25991118	3R_25991118_SNP [dm3] 3R_30165396_SNP [dm6]	A	G	4.610e^-4	1	SYNONYMOUS_CODING CG31030	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7086883	3R_7086883_SNP [dm3] 3R_11261161_SNP [dm6]	G	A	4.627e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8911255	2L_8911255_SNP [dm3] 2L_8911255_SNP [dm6]	T	G	4.630e^-4	1	INTRON CG34398
3L	11946873	3L_11946873_DEL [dm3] 3L_11953773_DEL [dm6]	ATCT	A	4.641e^-4	1	UPSTREAM CG7248 & 1 other INTERGENIC
3L	11002798	3L_11002798_SNP [dm3] 3L_11009698_SNP [dm6]	C	T	4.642e^-4	1	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	6550507	3R_6550507_SNP [dm3] 3R_10724785_SNP [dm6]	C	T	4.652e^-4	1	INTERGENIC
3L	4242725	3L_4242725_SNP [dm3] 3L_4242725_SNP [dm6]	T	A	4.652e^-4	1	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	8890810	2L_8890810_SNP [dm3] 2L_8890810_SNP [dm6]	C	T	4.653e^-4	1	UPSTREAM CG42713 INTERGENIC
X	3106767	X_3106767_SNP [dm3] X_3212734_SNP [dm6]	T	C	4.661e^-4	1	INTRON dnc
2L	15863723	2L_15863723_SNP [dm3] 2L_15863723_SNP [dm6]	A	G	4.666e^-4	1	DOWNSTREAM CR42791 INTERGENIC
3L	17410012	3L_17410012_SNP [dm3] 3L_17416912_SNP [dm6]	A	C	4.669e^-4	1	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15214671	X_15214671_SNP [dm3] X_15320638_SNP [dm6]	C	T	4.674e^-4	1	START_GAINED Top1 UTR_5_PRIME Top1 UPSTREAM mir-4957 INTRON Top1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	11618573	2L_11618573_SNP [dm3] 2L_11618573_SNP [dm6]	T	C	4.681e^-4	1	INTRON kek2
3L	7094690	3L_7094690_SNP [dm3] 3L_7101590_SNP [dm6]	T	C	4.684e^-4	1	INTRON form3
3L	20343492	3L_20343492_SNP [dm3] 3L_20350392_SNP [dm6]	G	A	4.689e^-4	1	SYNONYMOUS_CODING eRF1
2L	8906433	2L_8906433_SNP [dm3] 2L_8906433_SNP [dm6]	A	T	4.691e^-4	1	INTRON CG34398
2L	14004547	2L_14004547_SNP [dm3] 2L_14004547_SNP [dm6]	T	A	4.695e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9889641	2R_9889641_SNP [dm3] 2R_14002136_SNP [dm6]	A	G	4.696e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8958740	2L_8958740_SNP [dm3] 2L_8958740_SNP [dm6]	G	A	4.715e^-4	1	UPSTREAM CG31886 DOWNSTREAM CG9525 INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16741736	2R_16741736_DEL [dm3] 2R_20854231_DEL [dm6]	CT	C	4.715e^-4	1	INTERGENIC
2L	10017113	2L_10017113_SNP [dm3] 2L_10017113_SNP [dm6]	C	A	4.720e^-4	1	NON_SYNONYMOUS_CODING CG13131
3R	12474401	3R_12474401_SNP [dm3] 3R_16648679_SNP [dm6]	T	A	4.724e^-4	1	INTRON Cctgamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14648858	2R_14648858_SNP [dm3] 2R_18761353_SNP [dm6]	T	G	4.728e^-4	1	UPSTREAM Mctp & 1 other INTERGENIC
X	14702614	X_14702614_INS [dm3] X_14808581_INS [dm6]	T	TT	4.730e^-4	1	INTRON rut
X	11272541	X_11272541_SNP [dm3] X_11378508_SNP [dm6]	C	T	4.731e^-4	1	INTRON dlg1
3L	2465644	3L_2465644_SNP [dm3] 3L_2465644_SNP [dm6]	G	T	4.739e^-4	1	UTR_3_PRIME CG45186 DOWNSTREAM CG45186 INTRON CG45186
2L	15402110	2L_15402110_SNP [dm3] 2L_15402110_SNP [dm6]	C	A	4.763e^-4	1	INTERGENIC
3L	14114127	3L_14114127_SNP [dm3] 3L_14121027_SNP [dm6]	G	T	4.763e^-4	1	INTRON Sox21b
2L	5614524	2L_5614524_SNP [dm3] 2L_5614524_SNP [dm6]	C	G	4.794e^-4	1	UPSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	451889	2L_451889_SNP [dm3] 2L_451889_SNP [dm6]	G	A	4.795e^-4	1	UPSTREAM crq INTRON crq	TF binding site mE1_TFBS_inv
2R	8096002	2R_8096002_SNP [dm3] 2R_12208497_SNP [dm6]	C	A	4.798e^-4	1	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3R	25661407	3R_25661407_SNP [dm3] 3R_29835685_SNP [dm6]	T	C	4.803e^-4	1	UTR_3_PRIME CG42592 UPSTREAM CG15510 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2867596	2L_2867596_SNP [dm3] 2L_2867596_SNP [dm6]	T	C	4.804e^-4	1	SYNONYMOUS_CODING CG2991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5815192	X_5815192_SNP [dm3] X_5921159_SNP [dm6]	T	C	4.808e^-4	1	INTRON CG3726
2L	9545737	2L_9545737_SNP [dm3] 2L_9545737_SNP [dm6]	C	T	4.809e^-4	1	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
2R	11659497	2R_11659497_SNP [dm3] 2R_15771992_SNP [dm6]	G	C	4.836e^-4	1	INTRON Zasp52
3R	7721982	3R_7721982_DEL [dm3] 3R_11896260_DEL [dm6]	TC	T	4.840e^-4	1	INTRON Cad87A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10791106	3L_10791106_SNP [dm3] 3L_10798006_SNP [dm6]	G	T	4.852e^-4	1	INTERGENIC
2R	9251806	2R_9251806_SNP [dm3] 2R_13364301_SNP [dm6]	A	T	4.854e^-4	1	INTERGENIC
3L	12901769	3L_12901769_SNP [dm3] 3L_12908669_SNP [dm6]	A	C	4.855e^-4	1	INTERGENIC
2L	9561445	2L_9561445_SNP [dm3] 2L_9561445_SNP [dm6]	A	T	4.857e^-4	1	INTRON jp
X	16561937	X_16561937_SNP [dm3] X_16667904_SNP [dm6]	C	A	4.858e^-4	1	DOWNSTREAM CG13012 INTRON r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14129681	2L_14129681_DEL [dm3] 2L_14129681_DEL [dm6]	TAAAC	T	4.865e^-4	1	INTERGENIC
3R	22599737	3R_22599737_SNP [dm3] 3R_26774015_SNP [dm6]	G	A	4.869e^-4	1	INTERGENIC
2R	8110981	2R_8110981_SNP [dm3] 2R_12223476_SNP [dm6]	T	C	4.874e^-4	1	DOWNSTREAM CG8854 INTERGENIC
2L	11952622	2L_11952622_SNP [dm3] 2L_11952622_SNP [dm6]	A	G	4.882e^-4	1	DOWNSTREAM bft EXON CR43314
3R	6192592	3R_6192592_SNP [dm3] 3R_10366870_SNP [dm6]	G	A	4.894e^-4	1	SYNONYMOUS_CODING Rfx INTRON Rfx
3R	18139109	3R_18139109_SNP [dm3] 3R_22313387_SNP [dm6]	C	G	4.902e^-4	1	INTRON CG34377
2R	9888923	2R_9888923_SNP [dm3] 2R_14001418_SNP [dm6]	G	A	4.913e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25469128	3R_25469128_SNP [dm3] 3R_29643406_SNP [dm6]	G	T	4.914e^-4	1	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7244274	3L_7244274_SNP [dm3] 3L_7251174_SNP [dm6]	G	A	4.916e^-4	1	SYNONYMOUS_CODING CG14830 UPSTREAM MED4 EXON CR43470	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	8415533	3L_8415533_SNP [dm3] 3L_8422433_SNP [dm6]	T	G	4.923e^-4	1	UPSTREAM CG32354 INTERGENIC
2R	16957783	2R_16957783_SNP [dm3] 2R_21070278_SNP [dm6]	A	T	4.924e^-4	1	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
2L	7042092	2L_7042092_INS [dm3] 2L_7042092_INS [dm6]	A	ACACTTTGTTTTGTAGTGTC...	4.934e^-4	1	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3402534	2L_3402534_SNP [dm3] 2L_3402534_SNP [dm6]	A	G	4.938e^-4	1	INTERGENIC
2R	11221110	2R_11221110_SNP [dm3] 2R_15333605_SNP [dm6]	C	T	4.940e^-4	1	SYNONYMOUS_CODING Hr51	TF binding site mE1_TFBS_chinmo
3R	18611762	3R_18611762_SNP [dm3] 3R_22786040_SNP [dm6]	G	T	4.941e^-4	1	INTRON CG7029	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11414909	2L_11414909_SNP [dm3] 2L_11414909_SNP [dm6]	C	T	4.942e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	22216662	3R_22216662_SNP [dm3] 3R_26390940_SNP [dm6]	G	A	4.947e^-4	1	INTERGENIC
X	15120882	X_15120882_SNP [dm3] X_15226849_SNP [dm6]	G	A	4.950e^-4	1	DOWNSTREAM CR44430 INTERGENIC
2L	16371345	2L_16371345_SNP [dm3] 2L_16371345_SNP [dm6]	G	A	4.955e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2L	6763480	2L_6763480_SNP [dm3] 2L_6763480_SNP [dm6]	C	T	4.956e^-4	1	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	2430344	X_2430344_SNP [dm3] X_2536311_SNP [dm6]	T	C	4.977e^-4	1	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	15194067	2L_15194067_SNP [dm3] 2L_15194067_SNP [dm6]	C	A	4.985e^-4	1	INTRON CG4168
3R	26913930	3R_26913930_SNP [dm3] 3R_31088208_SNP [dm6]	C	G	4.989e^-4	1	INTERGENIC
2L	18919280	2L_18919280_SNP [dm3] 2L_18919280_SNP [dm6]	C	T	4.994e^-4	1	INTRON ssp3
3R	25658304	3R_25658304_SNP [dm3] 3R_29832582_SNP [dm6]	C	T	4.997e^-4	1	INTRON Atg16
2L	1908355	2L_1908355_SNP [dm3] 2L_1908355_SNP [dm6]	T	C	5.006e^-4	1	INTRON CG7337
2R	11731582	2R_11731582_SNP [dm3] 2R_15844077_SNP [dm6]	A	G	5.008e^-4	1	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2546748	2L_2546748_SNP [dm3] 2L_2546748_SNP [dm6]	C	T	5.013e^-4	1	INTERGENIC
X	7080577	X_7080577_DEL [dm3] X_7186544_DEL [dm6]	TT	T	5.013e^-4	1	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	7080580	X_7080580_SNP [dm3] X_7186547_SNP [dm6]	G	C	5.013e^-4	1	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	15318453	3R_15318453_SNP [dm3] 3R_19492731_SNP [dm6]	C	T	5.016e^-4	1	INTRON Dys
3R	16525498	3R_16525498_SNP [dm3] 3R_20699776_SNP [dm6]	G	C	5.023e^-4	1	INTRON Oamb
3L	10469365	3L_10469365_SNP [dm3] 3L_10476265_SNP [dm6]	A	C	5.031e^-4	1	INTERGENIC
3R	6714380	3R_6714380_SNP [dm3] 3R_10888658_SNP [dm6]	A	G	5.033e^-4	1	INTRON Leash & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4242638	3L_4242638_SNP [dm3] 3L_4242638_SNP [dm6]	A	G	5.041e^-4	1	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	13129654	X_13129654_SNP [dm3] X_13235621_SNP [dm6]	G	T	5.052e^-4	1	DOWNSTREAM CG32639 INTRON mew	TF binding site BDTNP1_TFBS_dl
2R	9888746	2R_9888746_SNP [dm3] 2R_14001241_SNP [dm6]	C	T	5.055e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	17820413	3L_17820413_SNP [dm3] 3L_17827313_SNP [dm6]	T	A	5.057e^-4	1	INTRON Grd
X	12993955	X_12993955_SNP [dm3] X_13099922_SNP [dm6]	G	T	5.058e^-4	1	INTRON CG43313
2R	11220114	2R_11220114_SNP [dm3] 2R_15332609_SNP [dm6]	G	A	5.059e^-4	1	INTRON Hr51
2L	18657843	2L_18657843_SNP [dm3] 2L_18657843_SNP [dm6]	G	T	5.074e^-4	1	INTRON MESR3
2R	9972446	2R_9972446_SNP [dm3] 2R_14084941_SNP [dm6]	C	T	5.074e^-4	1	INTRON Prosap	TF binding site mE1_TFBS_bab1
2L	15933405	2L_15933405_SNP [dm3] 2L_15933405_SNP [dm6]	T	G	5.076e^-4	1	INTRON beat-Ib
3L	13191960	3L_13191960_SNP [dm3] 3L_13198860_SNP [dm6]	G	T	5.082e^-4	1	INTERGENIC
2R	11239091	2R_11239091_SNP [dm3] 2R_15351586_SNP [dm6]	G	A	5.093e^-4	1	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	15260947	X_15260947_SNP [dm3] X_15366914_SNP [dm6]	A	G	5.094e^-4	1	INTRON acj6
2R	2419358	2R_2419358_SNP [dm3] 2R_6531853_SNP [dm6]	G	T	5.099e^-4	1	DOWNSTREAM CR43905 INTRON jing	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25399024	3R_25399024_SNP [dm3] 3R_29573302_SNP [dm6]	A	T	5.104e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6078375	3R_6078375_SNP [dm3] 3R_10252653_SNP [dm6]	G	A	5.113e^-4	1	NON_SYNONYMOUS_CODING CG3999
X	12837803	X_12837803_SNP [dm3] X_12943770_SNP [dm6]	T	C	5.123e^-4	1	INTRON fne
3R	6684580	3R_6684580_SNP [dm3] 3R_10858858_SNP [dm6]	G	C	5.159e^-4	1	SYNONYMOUS_CODING CG14694 DOWNSTREAM CG4570	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	17807793	3L_17807793_SNP [dm3] 3L_17814693_SNP [dm6]	C	G	5.162e^-4	1	UPSTREAM cln3 DOWNSTREAM Ir75a INTERGENIC
3R	21390451	3R_21390451_SNP [dm3] 3R_25564729_SNP [dm6]	G	A	5.179e^-4	1	INTRON msi
3R	8151411	3R_8151411_SNP [dm3] 3R_12325689_SNP [dm6]	A	G	5.183e^-4	1	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	4242630	3L_4242630_SNP [dm3] 3L_4242630_SNP [dm6]	A	T	5.191e^-4	1	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	16980319	3R_16980319_SNP [dm3] 3R_21154597_SNP [dm6]	A	G	5.193e^-4	1	INTRON SNF4Agamma
3R	25048556	3R_25048556_SNP [dm3] 3R_29222834_SNP [dm6]	G	A	5.201e^-4	1	UPSTREAM Brd8 DOWNSTREAM Ef1gamma INTRON CG1458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	10551314	3L_10551314_SNP [dm3] 3L_10558214_SNP [dm6]	G	C	5.204e^-4	1	UTR_3_PRIME CG6527 INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9732353	3L_9732353_SNP [dm3] 3L_9739253_SNP [dm6]	T	C	5.215e^-4	1	SYNONYMOUS_CODING CG42268 UTR_5_PRIME CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15461848	2L_15461848_SNP [dm3] 2L_15461848_SNP [dm6]	A	G	5.216e^-4	1	INTERGENIC
3R	4914751	3R_4914751_SNP [dm3] 3R_9089029_SNP [dm6]	C	T	5.217e^-4	1	INTRON pum
2L	2836273	2L_2836273_SNP [dm3] 2L_2836273_SNP [dm6]	G	T	5.229e^-4	1	INTRON CG3119
X	13216229	X_13216229_SNP [dm3] X_13322196_SNP [dm6]	A	C	5.233e^-4	1	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3578926	3L_3578926_SNP [dm3] 3L_3578926_SNP [dm6]	C	T	5.234e^-4	1	INTRON Eip63E	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	1451794	2L_1451794_DEL [dm3] 2L_1451794_DEL [dm6]	AA	A	5.237e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10711821	3L_10711821_SNP [dm3] 3L_10718721_SNP [dm6]	A	C	5.245e^-4	1	INTERGENIC
3R	19324300	3R_19324300_DEL [dm3] 3R_23498578_DEL [dm6]	AATATCA	A	5.254e^-4	1	INTERGENIC
X	12421962	X_12421962_SNP [dm3] X_12527929_SNP [dm6]	G	C	5.255e^-4	1	INTRON CG43921
3R	25352269	3R_25352269_SNP [dm3] 3R_29526547_SNP [dm6]	G	T	5.259e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8078974	2R_8078974_SNP [dm3] 2R_12191469_SNP [dm6]	G	C	5.260e^-4	1	NON_SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
3L	5274783	3L_5274783_SNP [dm3] 3L_5281683_SNP [dm6]	T	C	5.266e^-4	1	INTERGENIC
2R	12884787	2R_12884787_SNP [dm3] 2R_16997282_SNP [dm6]	A	G	5.285e^-4	1	SYNONYMOUS_CODING ste24c UTR_5_PRIME CG30461 UPSTREAM CG30461
3L	9142650	3L_9142650_SNP [dm3] 3L_9149550_SNP [dm6]	A	T	5.288e^-4	1	UTR_3_PRIME Rdl
2R	13834083	2R_13834083_DEL [dm3] 2R_17946578_DEL [dm6]	GATGGGG	G	5.294e^-4	1	INTERGENIC
X	19888523	X_19888523_SNP [dm3] X_19994490_SNP [dm6]	T	C	5.294e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13158113	2R_13158113_SNP [dm3] 2R_17270608_SNP [dm6]	C	T	5.295e^-4	1	INTRON mbl
3R	21103904	3R_21103904_SNP [dm3] 3R_25278182_SNP [dm6]	C	A	5.301e^-4	1	UPSTREAM CG10513 DOWNSTREAM CG10514 INTERGENIC
X	19762289	X_19762289_SNP [dm3] X_19868256_SNP [dm6]	G	T	5.301e^-4	1	INTRON Hers
3R	8482294	3R_8482294_INS [dm3] 3R_12656572_INS [dm6]	C	CC	5.311e^-4	1	INTRON CG6225
3L	17586254	3L_17586254_SNP [dm3] 3L_17593154_SNP [dm6]	T	A	5.314e^-4	1	INTRON Eip74EF
3R	7707317	3R_7707317_SNP [dm3] 3R_11881595_SNP [dm6]	A	G	5.324e^-4	1	SYNONYMOUS_CODING CG6962	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5083835	2L_5083835_SNP [dm3] 2L_5083835_SNP [dm6]	G	A	5.326e^-4	1	INTRON pgant5
2R	16145620	2R_16145620_SNP [dm3] 2R_20258115_SNP [dm6]	C	T	5.328e^-4	1	START_GAINED Hsl UTR_5_PRIME Hsl UPSTREAM Ate1 INTRON Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	7708845	3R_7708845_SNP [dm3] 3R_11883123_SNP [dm6]	T	A	5.330e^-4	1	SYNONYMOUS_CODING CG31368 UPSTREAM CG6962 DOWNSTREAM mthl5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	14644851	3L_14644851_SNP [dm3] 3L_14651751_SNP [dm6]	T	A	5.342e^-4	1	INTRON dlp	TF binding site mE1_TFBS_cnc
3R	11105845	3R_11105845_SNP [dm3] 3R_15280123_SNP [dm6]	A	G	5.349e^-4	1	INTERGENIC
3R	2287353	3R_2287353_DEL [dm3] 3R_6461631_DEL [dm6]	ACTTAATGCCTAACAACAAC...	A	5.351e^-4	1	INTERGENIC
3L	17815507	3L_17815507_SNP [dm3] 3L_17822407_SNP [dm6]	A	T	5.355e^-4	1	UPSTREAM Grd INTRON Ir75c
3L	20386809	3L_20386809_SNP [dm3] 3L_20393709_SNP [dm6]	C	G	5.361e^-4	1	UPSTREAM CG33969 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14805328	2R_14805328_SNP [dm3] 2R_18917823_SNP [dm6]	G	T	5.375e^-4	1	INTRON sano
2R	6093128	2R_6093128_SNP [dm3] 2R_10205623_SNP [dm6]	G	T	5.379e^-4	1	UTR_3_PRIME Hr46 & 1 other
3L	2471121	3L_2471121_SNP [dm3] 3L_2471121_SNP [dm6]	A	T	5.384e^-4	1	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	4912434	X_4912434_SNP [dm3] X_5018401_SNP [dm6]	T	C	5.396e^-4	1	INTRON CR44833	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10267682	3R_10267682_SNP [dm3] 3R_14441960_SNP [dm6]	A	T	5.397e^-4	1	INTRON cv-c
X	6268170	X_6268170_SNP [dm3] X_6374137_SNP [dm6]	C	A	5.398e^-4	1	INTERGENIC
3R	17809278	3R_17809278_SNP [dm3] 3R_21983556_SNP [dm6]	C	T	5.399e^-4	1	INTRON Eip93F
3R	23811181	3R_23811181_SNP [dm3] 3R_27985459_SNP [dm6]	A	C	5.401e^-4	1	INTRON betaTub97EF
3L	4527126	3L_4527126_SNP [dm3] 3L_4527126_SNP [dm6]	A	T	5.410e^-4	1	INTRON Tie
3R	10513134	3R_10513134_SNP [dm3] 3R_14687412_SNP [dm6]	G	T	5.413e^-4	1	INTRON Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11283491	3R_11283491_SNP [dm3] 3R_15457769_SNP [dm6]	T	C	5.418e^-4	1	INTRON AdamTS-A
X	15096745	X_15096745_SNP [dm3] X_15202712_SNP [dm6]	C	A	5.419e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6684545	3R_6684545_SNP [dm3] 3R_10858823_SNP [dm6]	T	C	5.419e^-4	1	DOWNSTREAM CG4570 INTRON CG14694	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	16497741	2L_16497741_SNP [dm3] 2L_16497741_SNP [dm6]	A	T	5.420e^-4	1	INTRON Tpr2
X	5143630	X_5143630_SNP [dm3] X_5249597_SNP [dm6]	A	C	5.440e^-4	1	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
3L	9989811	3L_9989811_SNP [dm3] 3L_9996711_SNP [dm6]	G	A	5.454e^-4	1	INTRON dpr6
2R	8111212	2R_8111212_SNP [dm3] 2R_12223707_SNP [dm6]	A	C	5.467e^-4	1	DOWNSTREAM CG8854 INTERGENIC
3L	5655386	3L_5655386_SNP [dm3] 3L_5662286_SNP [dm6]	C	T	5.467e^-4	1	UPSTREAM Sse INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6075497	3R_6075497_SNP [dm3] 3R_10249775_SNP [dm6]	T	C	5.473e^-4	1	NON_SYNONYMOUS_CODING CG42795 INTRON CG42795
3L	18563086	3L_18563086_SNP [dm3] 3L_18569986_SNP [dm6]	G	C	5.473e^-4	1	INTRON AstC-R1
3R	25631242	3R_25631242_SNP [dm3] 3R_29805520_SNP [dm6]	T	A	5.475e^-4	1	NON_SYNONYMOUS_CODING ncd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	6097864	3R_6097864_SNP [dm3] 3R_10272142_SNP [dm6]	A	G	5.490e^-4	1	INTRON CG43143
2R	6293479	2R_6293479_SNP [dm3] 2R_10405974_SNP [dm6]	G	A	5.492e^-4	1	INTRON CG42732
2L	7042534	2L_7042534_SNP [dm3] 2L_7042534_SNP [dm6]	C	T	5.493e^-4	1	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	22956969	2L_22956969_SNP [dm3] 2L_23064237_SNP [dm6]	A	T	5.494e^-4	1	INTERGENIC
3R	3801353	3R_3801353_SNP [dm3] 3R_7975631_SNP [dm6]	T	C	5.495e^-4	1	SYNONYMOUS_CODING CD98hc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14391153	2L_14391153_SNP [dm3] 2L_14391153_SNP [dm6]	T	G	5.516e^-4	1	UTR_3_PRIME elB	TF binding site mE1_TFBS_chinmo
2L	11418476	2L_11418476_SNP [dm3] 2L_11418476_SNP [dm6]	T	A	5.528e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11176078	3L_11176078_SNP [dm3] 3L_11182978_SNP [dm6]	T	A	5.535e^-4	1	INTRON GlcAT-P
3L	12988012	3L_12988012_SNP [dm3] 3L_12994912_SNP [dm6]	T	C	5.543e^-4	1	UPSTREAM CG11262 INTERGENIC
2R	12144016	2R_12144016_SNP [dm3] 2R_16256511_SNP [dm6]	T	C	5.546e^-4	1	INTRON CngA
3R	14342228	3R_14342228_SNP [dm3] 3R_18516506_SNP [dm6]	A	T	5.563e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
3R	15318341	3R_15318341_SNP [dm3] 3R_19492619_SNP [dm6]	G	T	5.573e^-4	1	INTRON Dys
2R	8084501	2R_8084501_SNP [dm3] 2R_12196996_SNP [dm6]	T	C	5.574e^-4	1	INTRON CG8858	TF binding site mE1_TFBS_cad
2L	15863710	2L_15863710_SNP [dm3] 2L_15863710_SNP [dm6]	C	A	5.581e^-4	1	DOWNSTREAM CR42791 INTERGENIC
2R	7424654	2R_7424654_SNP [dm3] 2R_11537149_SNP [dm6]	A	G	5.591e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13361367	3R_13361367_SNP [dm3] 3R_17535645_SNP [dm6]	G	T	5.596e^-4	1	UPSTREAM P5cr-2 INTRON P5cr-2
X	17300886	X_17300886_SNP [dm3] X_17406853_SNP [dm6]	G	A	5.620e^-4	1	INTERGENIC
2L	6400773	2L_6400773_SNP [dm3] 2L_6400773_SNP [dm6]	C	G	5.621e^-4	1	INTRON CG42368
2R	4631981	2R_4631981_SNP [dm3] 2R_8744476_SNP [dm6]	A	T	5.644e^-4	1	UPSTREAM CR44277 INTRON CG8740
3R	7712339	3R_7712339_SNP [dm3] 3R_11886617_SNP [dm6]	G	T	5.649e^-4	1	NON_SYNONYMOUS_CODING mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	7968297	2L_7968297_SNP [dm3] 2L_7968297_SNP [dm6]	T	G	5.650e^-4	1	INTRON Snoo
2R	12146901	2R_12146901_SNP [dm3] 2R_16259396_SNP [dm6]	G	T	5.653e^-4	1	UTR_5_PRIME CngA
2L	10727458	2L_10727458_SNP [dm3] 2L_10727458_SNP [dm6]	T	A	5.673e^-4	1	INTRON CG6431
3L	14650580	3L_14650580_SNP [dm3] 3L_14657480_SNP [dm6]	T	C	5.676e^-4	1	INTRON dlp
2L	15014598	2L_15014598_SNP [dm3] 2L_15014598_SNP [dm6]	T	A	5.679e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14889299	2R_14889299_SNP [dm3] 2R_19001794_SNP [dm6]	T	A	5.682e^-4	1	SPLICE_SITE_REGION tn INTRON tn	TF binding site mE1_TFBS_HSA
2R	2380660	2R_2380660_SNP [dm3] 2R_6493155_SNP [dm6]	G	C	5.684e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21673480	3R_21673480_SNP [dm3] 3R_25847758_SNP [dm6]	G	C	5.691e^-4	1	UPSTREAM CR45657 & 1 other DOWNSTREAM CR45655 INTERGENIC
3L	18156011	3L_18156011_SNP [dm3] 3L_18162911_SNP [dm6]	A	G	5.695e^-4	1	UPSTREAM CG13699 INTERGENIC
X	7582708	X_7582708_SNP [dm3] X_7688675_SNP [dm6]	T	C	5.700e^-4	1	NON_SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	5462912	2R_5462912_SNP [dm3] 2R_9575407_SNP [dm6]	G	C	5.708e^-4	1	SYNONYMOUS_CODING Not1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3578914	3L_3578914_SNP [dm3] 3L_3578914_SNP [dm6]	T	G	5.709e^-4	1	INTRON Eip63E	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	14805327	2R_14805327_SNP [dm3] 2R_18917822_SNP [dm6]	T	G	5.709e^-4	1	INTRON sano
2R	15389390	2R_15389390_INS [dm3] 2R_19501885_INS [dm6]	C	CC	5.711e^-4	1	UPSTREAM CG16926 INTERGENIC
3R	10520596	3R_10520596_INS [dm3] 3R_14694874_INS [dm6]	C	CTC	5.720e^-4	1	INTRON Meltrin
2L	7061753	2L_7061753_SNP [dm3] 2L_7061753_SNP [dm6]	C	T	5.744e^-4	1	UTR_3_PRIME Mnn1 UPSTREAM CG31907
3L	16874478	3L_16874478_SNP [dm3] 3L_16881378_SNP [dm6]	T	C	5.744e^-4	1	INTRON Lmpt
X	12213571	X_12213571_SNP [dm3] X_12319538_SNP [dm6]	T	C	5.745e^-4	1	INTRON Ten-a	TF binding site mE1_TFBS_cad
2R	3908916	2R_3908916_SNP [dm3] 2R_8021411_SNP [dm6]	A	C	5.746e^-4	1	EXON CR45267	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	9971303	2R_9971303_SNP [dm3] 2R_14083798_SNP [dm6]	C	T	5.749e^-4	1	INTRON Prosap
2L	1526487	2L_1526487_SNP [dm3] 2L_1526487_SNP [dm6]	A	C	5.772e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	6090643	3R_6090643_SNP [dm3] 3R_10264921_SNP [dm6]	T	A	5.798e^-4	1	INTRON CG43143	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	6501803	3R_6501803_SNP [dm3] 3R_10676081_SNP [dm6]	A	G	5.800e^-4	1	INTRON CG6465	TF binding site mE1_TFBS_bab1
3R	24304764	3R_24304764_DEL [dm3] 3R_28479042_DEL [dm6]	ATAGTATTTAGAAATTATAT...	A	5.801e^-4	1	INTERGENIC
X	7080597	X_7080597_DEL [dm3] X_7186564_DEL [dm6]	AA	A	5.802e^-4	1	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	11512963	2R_11512963_SNP [dm3] 2R_15625458_SNP [dm6]	G	A	5.805e^-4	1	INTRON CG42524
3L	6569472	3L_6569472_SNP [dm3] 3L_6576372_SNP [dm6]	T	C	5.806e^-4	1	INTRON CG18769 & 1 other
3L	12185544	3L_12185544_SNP [dm3] 3L_12192444_SNP [dm6]	A	G	5.809e^-4	1	UTR_3_PRIME Est-P DOWNSTREAM thoc6 INTRON thoc6
3R	4900120	3R_4900120_SNP [dm3] 3R_9074398_SNP [dm6]	C	T	5.815e^-4	1	INTRON pum
3R	13202519	3R_13202519_SNP [dm3] 3R_17376797_SNP [dm6]	G	A	5.826e^-4	1	INTRON Brf
2L	5951003	2L_5951003_SNP [dm3] 2L_5951003_SNP [dm6]	C	T	5.827e^-4	1	SYNONYMOUS_CODING CG9044	TF binding site mE1_TFBS_sens
X	6707312	X_6707312_SNP [dm3] X_6813279_SNP [dm6]	G	A	5.839e^-4	1	UTR_3_PRIME pod1 UPSTREAM iav
X	11895599	X_11895599_SNP [dm3] X_12001566_SNP [dm6]	T	C	5.839e^-4	1	INTRON fw
2L	14001452	2L_14001452_SNP [dm3] 2L_14001452_SNP [dm6]	T	A	5.869e^-4	1	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	12106245	3L_12106245_SNP [dm3] 3L_12113145_SNP [dm6]	A	G	5.882e^-4	1	INTERGENIC
3L	2467964	3L_2467964_SNP [dm3] 3L_2467964_SNP [dm6]	T	G	5.885e^-4	1	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3R	466135	3R_466135_SNP [dm3] 3R_4640413_SNP [dm6]	C	A	5.894e^-4	1	INTRON CG9775	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11653361	3R_11653361_SNP [dm3] 3R_15827639_SNP [dm6]	G	A	5.897e^-4	1	INTRON rec & 1 other
2L	1963825	2L_1963825_SNP [dm3] 2L_1963825_SNP [dm6]	T	C	5.902e^-4	1	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9956630	2R_9956630_SNP [dm3] 2R_14069125_SNP [dm6]	G	C	5.907e^-4	1	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1537445	2L_1537445_SNP [dm3] 2L_1537445_SNP [dm6]	A	C	5.916e^-4	1	INTERGENIC
2L	16240929	2L_16240929_SNP [dm3] 2L_16240929_SNP [dm6]	A	T	5.927e^-4	1	UTR_3_PRIME CG42817 DOWNSTREAM CG42817
2L	9538087	2L_9538087_SNP [dm3] 2L_9538087_SNP [dm6]	T	C	5.939e^-4	1	SYNONYMOUS_CODING Oatp30B
3R	9119182	3R_9119182_SNP [dm3] 3R_13293460_SNP [dm6]	A	G	5.939e^-4	1	UPSTREAM wntD INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3L	14186591	3L_14186591_SNP [dm3] 3L_14193491_SNP [dm6]	T	C	5.940e^-4	1	INTRON nuf
X	5921996	X_5921996_SNP [dm3] X_6027963_SNP [dm6]	T	C	5.943e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17820193	3L_17820193_INS [dm3] 3L_17827093_INS [dm6]	A	AA	5.973e^-4	1	INTRON Grd
2L	3118661	2L_3118661_SNP [dm3] 2L_3118661_SNP [dm6]	A	G	5.974e^-4	1	INTRON toc
3L	18354151	3L_18354151_SNP [dm3] 3L_18361051_SNP [dm6]	T	C	5.979e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	6568814	3L_6568814_SNP [dm3] 3L_6575714_SNP [dm6]	A	T	5.985e^-4	1	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_kn
2L	8906450	2L_8906450_SNP [dm3] 2L_8906450_SNP [dm6]	T	G	5.985e^-4	1	INTRON CG34398
X	4448450	X_4448450_SNP [dm3] X_4554417_SNP [dm6]	G	C	5.987e^-4	1	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9251827	2R_9251827_SNP [dm3] 2R_13364322_SNP [dm6]	C	A	5.994e^-4	1	INTERGENIC
2L	15400253	2L_15400253_SNP [dm3] 2L_15400253_SNP [dm6]	G	A	5.998e^-4	1	UPSTREAM CR44860 EXON CR45374
2L	16371334	2L_16371334_SNP [dm3] 2L_16371334_SNP [dm6]	C	T	6.000e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2R	17868940	2R_17868940_SNP [dm3] 2R_21981435_SNP [dm6]	A	T	6.000e^-4	1	DOWNSTREAM Gr58a INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10273673	3R_10273673_SNP [dm3] 3R_14447951_SNP [dm6]	T	C	6.003e^-4	1	INTRON cv-c
2L	18878983	2L_18878983_SNP [dm3] 2L_18878983_SNP [dm6]	A	G	6.005e^-4	1	INTRON tup
3R	8865764	3R_8865764_SNP [dm3] 3R_13040042_SNP [dm6]	A	C	6.009e^-4	1	NON_SYNONYMOUS_CODING CG11668 DOWNSTREAM snk
3L	18208310	3L_18208310_DEL [dm3] 3L_18215210_DEL [dm6]	ACCACAA	A	6.011e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	14114139	3L_14114139_SNP [dm3] 3L_14121039_SNP [dm6]	T	G	6.017e^-4	1	INTRON Sox21b
X	6332964	X_6332964_SNP [dm3] X_6438931_SNP [dm6]	G	T	6.025e^-4	1	INTRON CG42340
2L	7042101	2L_7042101_SNP [dm3] 2L_7042101_SNP [dm6]	T	A	6.029e^-4	1	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18155915	3L_18155915_SNP [dm3] 3L_18162815_SNP [dm6]	A	T	6.031e^-4	1	UPSTREAM CG13699 INTERGENIC
2R	14626514	2R_14626514_SNP [dm3] 2R_18739009_SNP [dm6]	C	T	6.032e^-4	1	UTR_3_PRIME CG33998 DOWNSTREAM CR30121 INTRON Hs3st-A
3L	8215472	3L_8215472_SNP [dm3] 3L_8222372_SNP [dm6]	T	G	6.037e^-4	1	INTRON CG13678

By genomic position
Variant impact
Gene name

Cuticul_2_Me_C28_C29 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results