DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.670e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.001087
In_3R_P	0.003348

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	13.3571	0.0013

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2488 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	13888271	2R_13888271_SNP [dm3] 2R_18000766_SNP [dm6]	A	T	5.577e^-7	0.467	INTRON dpr13
3R	9613891	3R_9613891_SNP [dm3] 3R_13788169_SNP [dm6]	T	A	5.814e^-7	0.467	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16624819	3L_16624819_SNP [dm3] 3L_16631719_SNP [dm6]	T	C	1.267e^-6	0.467	INTRON Abl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7075694	2L_7075694_MNP [dm3] 2L_7075694_MNP [dm6]	TGG	CTA	1.417e^-6	0.467	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7768218	3R_7768218_SNP [dm3] 3R_11942496_SNP [dm6]	A	C	1.613e^-6	0.467	INTRON Cad87A
3R	3395062	3R_3395062_SNP [dm3] 3R_7569340_SNP [dm6]	G	A	1.749e^-6	0.467	DOWNSTREAM CG34127 INTERGENIC
3R	7768547	3R_7768547_SNP [dm3] 3R_11942825_SNP [dm6]	A	T	1.823e^-6	0.467	INTRON Cad87A
2L	16552252	2L_16552252_SNP [dm3] 2L_16552252_SNP [dm6]	C	T	1.993e^-6	0.467	INTRON CG42389	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2R	18212484	2R_18212484_SNP [dm3] 2R_22324979_SNP [dm6]	G	A	2.286e^-6	0.476	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
3R	5428755	3R_5428755_SNP [dm3] 3R_9603033_SNP [dm6]	T	C	2.903e^-6	0.525	INTRON CG8312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9745078	X_9745078_INS [dm3] X_9851045_INS [dm6]	A	AGACAA	3.374e^-6	0.525	UTR_3_PRIME CG32698
3R	24938557	3R_24938557_INS [dm3] 3R_29112835_INS [dm6]	C	CTCTC	3.625e^-6	0.525	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	3.860e^-6	0.525	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
2R	10897085	2R_10897085_SNP [dm3] 2R_15009580_SNP [dm6]	T	A	3.921e^-6	0.525	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14904279	3R_14904279_SNP [dm3] 3R_19078557_SNP [dm6]	T	C	4.871e^-6	0.609	INTRON cdi
2R	4216491	2R_4216491_SNP [dm3] 2R_8328986_SNP [dm6]	T	C	5.747e^-6	0.623	INTRON pdm3
2R	13487738	2R_13487738_SNP [dm3] 2R_17600233_SNP [dm6]	T	C	5.891e^-6	0.623	SYNONYMOUS_CODING lack UPSTREAM CG43920 & 1 other	TF binding site mE1_TFBS_cad
2L	10355033	2L_10355033_SNP [dm3] 2L_10355033_SNP [dm6]	A	C	5.977e^-6	0.623	INTRON CG5367
3R	16494952	3R_16494952_SNP [dm3] 3R_20669230_SNP [dm6]	G	C	6.794e^-6	0.663	UPSTREAM Cpr92F INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16552251	2L_16552251_SNP [dm3] 2L_16552251_SNP [dm6]	G	A	7.252e^-6	0.663	INTRON CG42389	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3R	16428632	3R_16428632_SNP [dm3] 3R_20602910_SNP [dm6]	T	C	8.096e^-6	0.663	INTRON bon
3L	10542483	3L_10542483_SNP [dm3] 3L_10549383_SNP [dm6]	T	G	8.241e^-6	0.663	INTRON A2bp1
2L	7075777	2L_7075777_SNP [dm3] 2L_7075777_SNP [dm6]	C	T	9.260e^-6	0.663	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7075869	2L_7075869_SNP [dm3] 2L_7075869_SNP [dm6]	T	A	9.475e^-6	0.663	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14904281	3R_14904281_SNP [dm3] 3R_19078559_SNP [dm6]	T	G	9.993e^-6	0.663	INTRON cdi
X	4807838	X_4807838_SNP [dm3] X_4913805_SNP [dm6]	A	T	1.006e^-5	0.663	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17516808	2L_17516808_SNP [dm3] 2L_17516808_SNP [dm6]	T	A	1.016e^-5	0.663	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
3L	2607345	3L_2607345_SNP [dm3] 3L_2607345_SNP [dm6]	C	T	1.102e^-5	0.663	INTRON Pxn
X	17659765	X_17659765_SNP [dm3] X_17765732_SNP [dm6]	A	T	1.126e^-5	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19969059	3L_19969059_SNP [dm3] 3L_19975959_SNP [dm6]	G	T	1.135e^-5	0.663	INTRON Ac76E
3R	3352938	3R_3352938_SNP [dm3] 3R_7527216_SNP [dm6]	T	A	1.144e^-5	0.663	INTRON alpha-Est6 EXON alpha-Est4aPsi
3L	5342569	3L_5342569_DEL [dm3] 3L_5349469_DEL [dm6]	AAATA	A	1.234e^-5	0.663	INTRON lama
3R	3352922	3R_3352922_SNP [dm3] 3R_7527200_SNP [dm6]	C	T	1.272e^-5	0.663	INTRON alpha-Est6 EXON alpha-Est4aPsi
2L	15104877	2L_15104877_SNP [dm3] 2L_15104877_SNP [dm6]	C	T	1.293e^-5	0.663	INTERGENIC
2L	15095249	2L_15095249_SNP [dm3] 2L_15095249_SNP [dm6]	T	A	1.443e^-5	0.663	INTRON CG15270
3R	14732739	3R_14732739_SNP [dm3] 3R_18907017_SNP [dm6]	A	C	1.478e^-5	0.663	UTR_5_PRIME EndoA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	4996216	3R_4996216_SNP [dm3] 3R_9170494_SNP [dm6]	T	C	1.494e^-5	0.663	INTRON pum
2R	19339263	2R_19339263_DEL [dm3] 2R_23451740_DEL [dm6]	GT	C	1.578e^-5	0.663	INTRON CG43795
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	1.668e^-5	0.663	INTRON CR44941
3L	9649700	3L_9649700_INS [dm3] 3L_9656600_INS [dm6]	C	CAACAAAATTC...	1.672e^-5	0.663	INTRON fry & 1 other
3R	9614355	3R_9614355_SNP [dm3] 3R_13788633_SNP [dm6]	G	A	1.701e^-5	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7768136	3R_7768136_SNP [dm3] 3R_11942414_SNP [dm6]	A	G	1.745e^-5	0.663	INTRON Cad87A
2L	9692306	2L_9692306_SNP [dm3] 2L_9692306_SNP [dm6]	T	C	1.776e^-5	0.663	INTRON Pka-C1
2L	7075833	2L_7075833_SNP [dm3] 2L_7075833_SNP [dm6]	T	C	1.782e^-5	0.663	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17536311	X_17536311_SNP [dm3] X_17642278_SNP [dm6]	C	A	1.789e^-5	0.663	INTRON RhoGAPp190	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	618614	2R_618614_SNP [dm3] 2R_4731109_SNP [dm6]	C	G	1.863e^-5	0.663	UPSTREAM CR41440 EXON CR40282 & 1 other
3L	6576863	3L_6576863_SNP [dm3] 3L_6583763_SNP [dm6]	G	T	1.946e^-5	0.663	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_inv
2L	7075702	2L_7075702_SNP [dm3] 2L_7075702_SNP [dm6]	G	A	1.959e^-5	0.663	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7743962	X_7743962_SNP [dm3] X_7849929_SNP [dm6]	T	C	1.998e^-5	0.663	INTERGENIC
3R	14899609	3R_14899609_SNP [dm3] 3R_19073887_SNP [dm6]	G	T	2.021e^-5	0.663	INTRON cdi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8223796	3R_8223796_INS [dm3] 3R_12398074_INS [dm6]	T	TA	2.047e^-5	0.663	DOWNSTREAM lig3 INTRON CG34402 & 1 other
3R	9676783	3R_9676783_DEL [dm3] 3R_13851061_DEL [dm6]	GGAAAATTAAGCTATGCGAA...	CCC	2.110e^-5	0.663	INTERGENIC
2R	9367763	2R_9367763_SNP [dm3] 2R_13480258_SNP [dm6]	T	A	2.110e^-5	0.663	INTRON arr
3R	1065952	3R_1065952_SNP [dm3] 3R_5240230_SNP [dm6]	G	T	2.224e^-5	0.663	UTR_3_PRIME CG33293 INTRON CG12163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24871403	3R_24871403_SNP [dm3] 3R_29045681_SNP [dm6]	C	G	2.234e^-5	0.663	SYNONYMOUS_CODING Pkc98E
3R	14380877	3R_14380877_SNP [dm3] 3R_18555155_SNP [dm6]	G	T	2.272e^-5	0.663	INTERGENIC
X	20880672	X_20880672_DEL [dm3] X_21009645_DEL [dm6]	AGATGAGGAAAAACTA...	A	2.293e^-5	0.663	INTERGENIC
3L	12247082	3L_12247082_SNP [dm3] 3L_12253982_SNP [dm6]	C	A	2.311e^-5	0.663	INTRON app
2R	17786585	2R_17786585_SNP [dm3] 2R_21899080_SNP [dm6]	C	T	2.349e^-5	0.663	INTRON Fili
2L	10355738	2L_10355738_SNP [dm3] 2L_10355738_SNP [dm6]	C	T	2.352e^-5	0.663	NON_SYNONYMOUS_CODING CG5367
3L	7448361	3L_7448361_SNP [dm3] 3L_7455261_SNP [dm6]	T	A	2.389e^-5	0.663	UPSTREAM ppk26 DOWNSTREAM CG42458 INTERGENIC
2R	11422675	2R_11422675_SNP [dm3] 2R_15535170_SNP [dm6]	G	C	2.520e^-5	0.663	SPLICE_SITE_REGION CG30471 UTR_5_PRIME CG30471
3L	12003005	3L_12003005_SNP [dm3] 3L_12009905_SNP [dm6]	G	A	2.554e^-5	0.663	SYNONYMOUS_CODING rols	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3310370	3R_3310370_SNP [dm3] 3R_7484648_SNP [dm6]	C	A	2.563e^-5	0.663	INTERGENIC
2R	11353744	2R_11353744_SNP [dm3] 2R_15466239_SNP [dm6]	C	G	2.595e^-5	0.663	INTRON CG43729
3L	4223777	3L_4223777_INS [dm3] 3L_4223777_INS [dm6]	A	ACTGAACA	2.598e^-5	0.663	UTR_3_PRIME CG43367 DOWNSTREAM ImpL2	TF binding site mE1_TFBS_inv
3R	11028748	3R_11028748_SNP [dm3] 3R_15203026_SNP [dm6]	A	G	2.614e^-5	0.663	UTR_3_PRIME CG42542 DOWNSTREAM Spn88Ea & 1 other
3L	6589159	3L_6589159_SNP [dm3] 3L_6596059_SNP [dm6]	C	G	2.642e^-5	0.663	SYNONYMOUS_CODING ndl
2L	923850	2L_923850_SNP [dm3] 2L_923850_SNP [dm6]	C	T	2.660e^-5	0.663	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2R	11354006	2R_11354006_SNP [dm3] 2R_15466501_SNP [dm6]	A	T	2.701e^-5	0.663	INTRON CG43729
2R	11354007	2R_11354007_SNP [dm3] 2R_15466502_SNP [dm6]	G	C	2.701e^-5	0.663	INTRON CG43729
3L	6945496	3L_6945496_SNP [dm3] 3L_6952396_SNP [dm6]	G	A	2.811e^-5	0.663	UTR_3_PRIME CG10077 INTRON CG10077
2R	9407245	2R_9407245_SNP [dm3] 2R_13519740_SNP [dm6]	A	T	2.830e^-5	0.663	INTRON Vmat	TF binding site mE1_TFBS_cad
3R	7768481	3R_7768481_SNP [dm3] 3R_11942759_SNP [dm6]	G	A	2.845e^-5	0.663	INTRON Cad87A
2R	9591534	2R_9591534_SNP [dm3] 2R_13704029_SNP [dm6]	T	C	2.868e^-5	0.663	INTRON fas
3R	16428653	3R_16428653_SNP [dm3] 3R_20602931_SNP [dm6]	G	A	2.989e^-5	0.663	INTRON bon
3R	23470717	3R_23470717_SNP [dm3] 3R_27644995_SNP [dm6]	A	G	3.002e^-5	0.663	INTRON tau	TF binding site BDTNP1_TFBS_prd
3R	10928120	3R_10928120_SNP [dm3] 3R_15102398_SNP [dm6]	T	A	3.007e^-5	0.663	INTRON CG42788
3R	5000954	3R_5000954_DEL [dm3] 3R_9175232_DEL [dm6]	AA	A	3.037e^-5	0.663	INTRON pum
2L	15403365	2L_15403365_SNP [dm3] 2L_15403365_SNP [dm6]	C	A	3.114e^-5	0.663	INTERGENIC
2L	10459970	2L_10459970_SNP [dm3] 2L_10459970_SNP [dm6]	T	C	3.161e^-5	0.663	SYNONYMOUS_CODING LM408
3L	7307474	3L_7307474_SNP [dm3] 3L_7314374_SNP [dm6]	T	A	3.177e^-5	0.663	INTERGENIC
2L	7075819	2L_7075819_DEL [dm3] 2L_7075819_DEL [dm6]	TAT	T	3.239e^-5	0.663	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18711683	3R_18711683_SNP [dm3] 3R_22885961_SNP [dm6]	A	G	3.240e^-5	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	15403367	2L_15403367_SNP [dm3] 2L_15403367_SNP [dm6]	A	G	3.241e^-5	0.663	INTERGENIC
3R	10037587	3R_10037587_SNP [dm3] 3R_14211865_SNP [dm6]	C	A	3.253e^-5	0.663	INTRON Dop1R1
3R	9677552	3R_9677552_SNP [dm3] 3R_13851830_SNP [dm6]	G	A	3.341e^-5	0.663	INTERGENIC
2L	12089190	2L_12089190_SNP [dm3] 2L_12089190_SNP [dm6]	A	G	3.351e^-5	0.663	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11811868	2L_11811868_SNP [dm3] 2L_11811868_SNP [dm6]	T	C	3.385e^-5	0.663	SYNONYMOUS_CODING CycY	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7278737	2R_7278737_SNP [dm3] 2R_11391232_SNP [dm6]	T	G	3.404e^-5	0.663	INTRON sprt
3L	14582739	3L_14582739_SNP [dm3] 3L_14589639_SNP [dm6]	G	A	3.409e^-5	0.663	INTRON HGTX
3R	13916678	3R_13916678_SNP [dm3] 3R_18090956_SNP [dm6]	T	C	3.493e^-5	0.663	UTR_5_PRIME sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15403373	2L_15403373_SNP [dm3] 2L_15403373_SNP [dm6]	T	G	3.505e^-5	0.663	INTERGENIC
3R	18174376	3R_18174376_SNP [dm3] 3R_22348654_SNP [dm6]	G	T	3.571e^-5	0.663	INTERGENIC
3L	7851352	3L_7851352_SNP [dm3] 3L_7858252_SNP [dm6]	G	T	3.583e^-5	0.663	INTRON Pdp1	TF binding site mE1_TFBS_HSA
2L	5336427	2L_5336427_SNP [dm3] 2L_5336427_SNP [dm6]	G	T	3.593e^-5	0.663	UPSTREAM fusl INTRON fusl
2L	15403375	2L_15403375_SNP [dm3] 2L_15403375_SNP [dm6]	A	G	3.622e^-5	0.663	INTERGENIC
2L	5273998	2L_5273998_SNP [dm3] 2L_5273998_SNP [dm6]	C	A	3.629e^-5	0.663	UTR_3_PRIME Bsg25D INTRON Bsg25D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2L	5336428	2L_5336428_INS [dm3] 2L_5336428_INS [dm6]	A	ATTTTTA	3.676e^-5	0.663	UPSTREAM fusl INTRON fusl
3L	18911661	3L_18911661_SNP [dm3] 3L_18918561_SNP [dm6]	G	A	3.678e^-5	0.663	SYNONYMOUS_CODING CG6839 DOWNSTREAM CG18223	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12475243	3L_12475243_SNP [dm3] 3L_12482143_SNP [dm6]	C	G	3.812e^-5	0.663	UPSTREAM CG33725 INTRON CG10663
2R	20406016	2R_20406016_SNP [dm3] 2R_24518493_SNP [dm6]	A	G	3.818e^-5	0.663	UPSTREAM Ir60d EXON Ir60c	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1930885	3L_1930885_SNP [dm3] 3L_1930885_SNP [dm6]	C	T	3.829e^-5	0.663	INTRON Dbx
2L	7075801	2L_7075801_SNP [dm3] 2L_7075801_SNP [dm6]	G	T	3.834e^-5	0.663	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7075806	2L_7075806_SNP [dm3] 2L_7075806_SNP [dm6]	T	C	3.834e^-5	0.663	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9654710	3R_9654710_SNP [dm3] 3R_13828988_SNP [dm6]	T	G	3.919e^-5	0.663	UPSTREAM Mst87F DOWNSTREAM CR43300 INTERGENIC
3L	12882289	3L_12882289_SNP [dm3] 3L_12889189_SNP [dm6]	A	T	3.962e^-5	0.663	UTR_3_PRIME CG14120 UPSTREAM CG43894 DOWNSTREAM CR45748
3R	1189231	3R_1189231_SNP [dm3] 3R_5363509_SNP [dm6]	T	C	3.976e^-5	0.663	INTRON Cerk
2R	13320915	2R_13320915_SNP [dm3] 2R_17433410_SNP [dm6]	C	T	3.991e^-5	0.663	INTRON EDTP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15332848	3R_15332848_DEL [dm3] 3R_19507126_DEL [dm6]	GCTG	G	3.992e^-5	0.663	INTRON Dys
2R	9592749	2R_9592749_SNP [dm3] 2R_13705244_SNP [dm6]	G	A	3.994e^-5	0.663	INTRON fas
2R	11354009	2R_11354009_INS [dm3] 2R_15466504_INS [dm6]	G	GC	4.040e^-5	0.663	INTRON CG43729
X	19390757	X_19390757_SNP [dm3] X_19496724_SNP [dm6]	T	C	4.042e^-5	0.663	UTR_5_PRIME Pfrx UPSTREAM CR44340 INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19963863	3L_19963863_SNP [dm3] 3L_19970763_SNP [dm6]	T	G	4.061e^-5	0.663	INTRON Ac76E	TF binding site mE1_TFBS_chinmo
3R	16428600	3R_16428600_SNP [dm3] 3R_20602878_SNP [dm6]	G	T	4.075e^-5	0.663	INTRON bon
2L	1480246	2L_1480246_SNP [dm3] 2L_1480246_SNP [dm6]	G	A	4.101e^-5	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1256356	3L_1256356_SNP [dm3] 3L_1256356_SNP [dm6]	G	A	4.225e^-5	0.669	UPSTREAM CG9134 DOWNSTREAM CG9130 & 1 other INTERGENIC
2L	15585637	2L_15585637_SNP [dm3] 2L_15585637_SNP [dm6]	T	C	4.236e^-5	0.669	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10897097	2R_10897097_DEL [dm3] 2R_15009592_DEL [dm6]	TCGCTATAATATACATAT...	T	4.243e^-5	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9676514	3R_9676514_SNP [dm3] 3R_13850792_SNP [dm6]	G	A	4.382e^-5	0.67	INTERGENIC
3L	3889754	3L_3889754_SNP [dm3] 3L_3889754_SNP [dm6]	T	A	4.480e^-5	0.67	INTERGENIC
2R	11353871	2R_11353871_SNP [dm3] 2R_15466366_SNP [dm6]	T	G	4.487e^-5	0.67	INTRON CG43729
3R	3374277	3R_3374277_SNP [dm3] 3R_7548555_SNP [dm6]	T	A	4.563e^-5	0.67	INTRON alpha-Est1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15341479	X_15341479_SNP [dm3] X_15447446_SNP [dm6]	C	T	4.581e^-5	0.67	SYNONYMOUS_CODING Scamp UTR_3_PRIME Scamp
3L	7600758	3L_7600758_SNP [dm3] 3L_7607658_SNP [dm6]	T	A	4.648e^-5	0.67	INTRON CG33275	TF binding site BDTNP1_TFBS_twi
2R	9592058	2R_9592058_INS [dm3] 2R_13704553_INS [dm6]	T	TGGAGC	4.785e^-5	0.67	INTRON fas
2L	7068031	2L_7068031_SNP [dm3] 2L_7068031_SNP [dm6]	T	G	4.794e^-5	0.67	NON_SYNONYMOUS_CODING CG11289
3R	13148567	3R_13148567_SNP [dm3] 3R_17322845_SNP [dm6]	T	C	4.834e^-5	0.67	INTRON beat-IIa
3L	7307472	3L_7307472_SNP [dm3] 3L_7314372_SNP [dm6]	C	G	4.838e^-5	0.67	INTERGENIC
3L	743355	3L_743355_SNP [dm3] 3L_743355_SNP [dm6]	A	G	4.851e^-5	0.67	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	1286926	2L_1286926_SNP [dm3] 2L_1286926_SNP [dm6]	C	A	4.865e^-5	0.67	NON_SYNONYMOUS_CODING robo3
2L	5336443	2L_5336443_SNP [dm3] 2L_5336443_SNP [dm6]	G	T	4.877e^-5	0.67	UPSTREAM fusl INTRON fusl
2L	5336445	2L_5336445_INS [dm3] 2L_5336445_INS [dm6]	CCA	TTTGG	4.877e^-5	0.67	UPSTREAM fusl INTRON fusl
3R	3369515	3R_3369515_SNP [dm3] 3R_7543793_SNP [dm6]	A	G	4.922e^-5	0.67	INTRON alpha-Est2
X	2696203	X_2696203_SNP [dm3] X_2802170_SNP [dm6]	A	G	4.933e^-5	0.67	INTRON kirre
3R	10832530	3R_10832530_SNP [dm3] 3R_15006808_SNP [dm6]	A	G	4.954e^-5	0.67	INTERGENIC
2L	16627014	2L_16627014_INS [dm3] 2L_16627014_INS [dm6]	T	TGA	4.956e^-5	0.67	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	9786893	3R_9786893_SNP [dm3] 3R_13961171_SNP [dm6]	A	G	4.988e^-5	0.67	NON_SYNONYMOUS_CODING CG9925 DOWNSTREAM Ipp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7075825	2L_7075825_SNP [dm3] 2L_7075825_SNP [dm6]	C	A	4.988e^-5	0.67	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7075701	2L_7075701_SNP [dm3] 2L_7075701_SNP [dm6]	G	A	4.998e^-5	0.67	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15453000	3R_15453000_SNP [dm3] 3R_19627278_SNP [dm6]	G	A	5.077e^-5	0.675	INTRON CG6231
3R	25831464	3R_25831464_DEL [dm3] 3R_30005742_DEL [dm6]	TTTT	T	5.161e^-5	0.677	UPSTREAM CG7911 DOWNSTREAM CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10232856	3R_10232856_SNP [dm3] 3R_14407134_SNP [dm6]	T	A	5.270e^-5	0.677	INTRON cv-c
2L	5449849	2L_5449849_SNP [dm3] 2L_5449849_SNP [dm6]	C	A	5.280e^-5	0.677	INTERGENIC
X	19391052	X_19391052_SNP [dm3] X_19497019_SNP [dm6]	C	T	5.282e^-5	0.677	INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8628336	X_8628336_SNP [dm3] X_8734303_SNP [dm6]	A	G	5.306e^-5	0.677	INTERGENIC
2L	5336451	2L_5336451_SNP [dm3] 2L_5336451_SNP [dm6]	A	T	5.310e^-5	0.677	UPSTREAM fusl INTRON fusl
3R	4996564	3R_4996564_SNP [dm3] 3R_9170842_SNP [dm6]	G	A	5.471e^-5	0.693	INTRON pum
2L	5336441	2L_5336441_SNP [dm3] 2L_5336441_SNP [dm6]	C	A	5.528e^-5	0.696	UPSTREAM fusl INTRON fusl
2R	20357503	2R_20357503_SNP [dm3] 2R_24469980_SNP [dm6]	T	C	5.692e^-5	0.696	INTRON CG13579
2L	5336464	2L_5336464_SNP [dm3] 2L_5336464_SNP [dm6]	T	A	5.727e^-5	0.696	UPSTREAM fusl INTRON fusl
X	7241096	X_7241096_SNP [dm3] X_7347063_SNP [dm6]	A	C	5.764e^-5	0.696	NON_SYNONYMOUS_CODING CG15034 INTRON CR44357 & 1 other
2L	15555437	2L_15555437_SNP [dm3] 2L_15555437_SNP [dm6]	T	C	5.765e^-5	0.696	INTRON kek3
3R	3353084	3R_3353084_SNP [dm3] 3R_7527362_SNP [dm6]	G	C	5.765e^-5	0.696	INTRON alpha-Est6 EXON alpha-Est4aPsi
3L	19665307	3L_19665307_SNP [dm3] 3L_19672207_SNP [dm6]	C	T	5.792e^-5	0.696	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13746070	2L_13746070_SNP [dm3] 2L_13746070_SNP [dm6]	C	A	5.794e^-5	0.696	UPSTREAM TM9SF4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25829835	3R_25829835_SNP [dm3] 3R_30004113_SNP [dm6]	C	T	5.827e^-5	0.696	SYNONYMOUS_CODING CG7911 UPSTREAM Nlp DOWNSTREAM Tace	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	10037525	3R_10037525_SNP [dm3] 3R_14211803_SNP [dm6]	C	G	5.928e^-5	0.704	INTRON Dop1R1
2L	7068058	2L_7068058_SNP [dm3] 2L_7068058_SNP [dm6]	G	A	5.965e^-5	0.704	NON_SYNONYMOUS_CODING CG11289
3L	12475274	3L_12475274_SNP [dm3] 3L_12482174_SNP [dm6]	G	A	6.063e^-5	0.706	UPSTREAM CG33725 INTRON CG10663
3L	12475285	3L_12475285_SNP [dm3] 3L_12482185_SNP [dm6]	C	G	6.102e^-5	0.706	UPSTREAM CG33725 INTRON CG10663
2R	16767583	2R_16767583_SNP [dm3] 2R_20880078_SNP [dm6]	A	G	6.142e^-5	0.706	SYNONYMOUS_CODING Cib2 DOWNSTREAM Ipk1
2L	4157360	2L_4157360_SNP [dm3] 2L_4157360_SNP [dm6]	A	T	6.144e^-5	0.706	INTERGENIC
3R	7728163	3R_7728163_SNP [dm3] 3R_11902441_SNP [dm6]	A	T	6.172e^-5	0.706	INTRON Cad87A
X	19389695	X_19389695_SNP [dm3] X_19495662_SNP [dm6]	G	C	6.208e^-5	0.706	UTR_5_PRIME CG14200 UPSTREAM ksh INTRON Pfrx EXON CR44340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	6234590	2L_6234590_SNP [dm3] 2L_6234590_SNP [dm6]	A	G	6.334e^-5	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	15627022	3R_15627022_SNP [dm3] 3R_19801300_SNP [dm6]	C	G	6.361e^-5	0.708	INTRON bnl	TF binding site mE1_TFBS_inv
X	7241078	X_7241078_SNP [dm3] X_7347045_SNP [dm6]	G	T	6.369e^-5	0.708	NON_SYNONYMOUS_CODING CG15034 INTRON CR44357 & 1 other
2L	16396423	2L_16396423_SNP [dm3] 2L_16396423_SNP [dm6]	C	A	6.380e^-5	0.708	INTERGENIC
2R	14425021	2R_14425021_SNP [dm3] 2R_18537516_SNP [dm6]	C	G	6.466e^-5	0.713	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8974269	3L_8974269_SNP [dm3] 3L_8981169_SNP [dm6]	G	A	6.579e^-5	0.713	UPSTREAM CG13314 INTERGENIC
2R	13320951	2R_13320951_SNP [dm3] 2R_17433446_SNP [dm6]	A	G	6.627e^-5	0.713	SYNONYMOUS_CODING EDTP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7728095	3R_7728095_SNP [dm3] 3R_11902373_SNP [dm6]	T	C	6.632e^-5	0.713	INTRON Cad87A
3R	16639728	3R_16639728_SNP [dm3] 3R_20814006_SNP [dm6]	C	T	6.666e^-5	0.713	SYNONYMOUS_CODING Fancd2
X	19391019	X_19391019_DEL [dm3] X_19496986_DEL [dm6]	ACA	A	6.686e^-5	0.713	INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4157375	2L_4157375_SNP [dm3] 2L_4157375_SNP [dm6]	T	G	6.768e^-5	0.713	INTERGENIC
3R	16522461	3R_16522461_SNP [dm3] 3R_20696739_SNP [dm6]	C	T	6.789e^-5	0.713	INTRON Oamb
3R	15332684	3R_15332684_SNP [dm3] 3R_19506962_SNP [dm6]	A	G	6.814e^-5	0.713	INTRON Dys
2R	20357487	2R_20357487_SNP [dm3] 2R_24469964_SNP [dm6]	G	A	6.851e^-5	0.713	INTRON CG13579
3L	2871564	3L_2871564_SNP [dm3] 3L_2871564_SNP [dm6]	G	A	6.854e^-5	0.713	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad
2R	6801259	2R_6801259_SNP [dm3] 2R_10913754_SNP [dm6]	A	G	6.898e^-5	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3442741	X_3442741_SNP [dm3] X_3548708_SNP [dm6]	G	A	6.950e^-5	0.713	INTRON CG32791
2R	14926512	2R_14926512_SNP [dm3] 2R_19039007_SNP [dm6]	T	C	6.953e^-5	0.713	INTERGENIC
3R	8349994	3R_8349994_SNP [dm3] 3R_12524272_SNP [dm6]	C	A	7.039e^-5	0.718	INTRON Octbeta3R
2R	13933748	2R_13933748_DEL [dm3] 2R_18046243_DEL [dm6]	ATGTAAGTGTTA...	A	7.122e^-5	0.722	DOWNSTREAM CG5767 INTERGENIC
3R	16641048	3R_16641048_SNP [dm3] 3R_20815326_SNP [dm6]	T	C	7.274e^-5	0.728	SYNONYMOUS_CODING Fancd2	TF binding site mE1_TFBS_sens
3L	14069165	3L_14069165_SNP [dm3] 3L_14076065_SNP [dm6]	A	C	7.298e^-5	0.728	UTR_3_PRIME Pex1 UPSTREAM btl INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	10914564	3R_10914564_SNP [dm3] 3R_15088842_SNP [dm6]	A	T	7.326e^-5	0.728	INTRON CG6966
2L	16379723	2L_16379723_SNP [dm3] 2L_16379723_SNP [dm6]	G	C	7.413e^-5	0.728	INTERGENIC
3R	23473366	3R_23473366_SNP [dm3] 3R_27647644_SNP [dm6]	G	A	7.426e^-5	0.728	UPSTREAM tau INTRON tau
2R	14765723	2R_14765723_SNP [dm3] 2R_18878218_SNP [dm6]	T	G	7.452e^-5	0.728	UPSTREAM sano INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9614191	3R_9614191_SNP [dm3] 3R_13788469_SNP [dm6]	T	G	7.471e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7081850	2L_7081850_SNP [dm3] 2L_7081850_SNP [dm6]	T	C	7.530e^-5	0.728	INTRON Pvf2
2L	7081851	2L_7081851_SNP [dm3] 2L_7081851_SNP [dm6]	G	T	7.530e^-5	0.728	INTRON Pvf2
X	7243316	X_7243316_SNP [dm3] X_7349283_SNP [dm6]	T	C	7.621e^-5	0.728	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9440579	X_9440579_SNP [dm3] X_9546546_SNP [dm6]	T	A	7.639e^-5	0.728	INTRON CG32700
2R	17763430	2R_17763430_SNP [dm3] 2R_21875925_SNP [dm6]	A	C	7.648e^-5	0.728	INTRON Fili
2R	602414	2R_602414_SNP [dm3] 2R_4714909_SNP [dm6]	G	A	7.701e^-5	0.728	INTRON Nipped-B	transposable element FlyBase
3L	10602343	3L_10602343_SNP [dm3] 3L_10609243_SNP [dm6]	C	A	7.729e^-5	0.728	INTERGENIC
2R	11353999	2R_11353999_SNP [dm3] 2R_15466494_SNP [dm6]	G	T	7.776e^-5	0.729	INTRON CG43729
3R	3370557	3R_3370557_SNP [dm3] 3R_7544835_SNP [dm6]	G	A	7.879e^-5	0.732	SYNONYMOUS_CODING alpha-Est2 DOWNSTREAM alpha-Est1
3R	15455842	3R_15455842_SNP [dm3] 3R_19630120_SNP [dm6]	T	C	7.886e^-5	0.732	INTRON CG6231	TF binding site mE1_TFBS_kn
3R	20625780	3R_20625780_SNP [dm3] 3R_24800058_SNP [dm6]	A	G	8.079e^-5	0.733	SYNONYMOUS_CODING polybromo UPSTREAM Ude	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	4155427	2L_4155427_SNP [dm3] 2L_4155427_SNP [dm6]	T	C	8.096e^-5	0.733	INTERGENIC
2R	6801260	2R_6801260_SNP [dm3] 2R_10913755_SNP [dm6]	T	C	8.142e^-5	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7906041	X_7906041_SNP [dm3] X_8012008_SNP [dm6]	T	G	8.144e^-5	0.733	INTRON Tbh
2R	9123877	2R_9123877_SNP [dm3] 2R_13236372_SNP [dm6]	T	C	8.150e^-5	0.733	SYNONYMOUS_CODING CG4676 DOWNSTREAM CG4679	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24938589	3R_24938589_SNP [dm3] 3R_29112867_SNP [dm6]	A	C	8.234e^-5	0.733	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8900203	2L_8900203_SNP [dm3] 2L_8900203_SNP [dm6]	T	A	8.282e^-5	0.733	INTRON CG34398
2L	6532800	2L_6532800_SNP [dm3] 2L_6532800_SNP [dm6]	T	C	8.328e^-5	0.733	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4152137	2L_4152137_SNP [dm3] 2L_4152137_SNP [dm6]	G	A	8.339e^-5	0.733	DOWNSTREAM CG2955 INTERGENIC
3L	9705247	3L_9705247_SNP [dm3] 3L_9712147_SNP [dm6]	T	C	8.343e^-5	0.733	SYNONYMOUS_CODING SH3PX1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	2543183	3L_2543183_SNP [dm3] 3L_2543183_SNP [dm6]	C	T	8.388e^-5	0.733	INTRON Spn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11184188	3R_11184188_SNP [dm3] 3R_15358466_SNP [dm6]	C	T	8.489e^-5	0.733	DOWNSTREAM ldlCp INTRON CG5044
3L	14069138	3L_14069138_SNP [dm3] 3L_14076038_SNP [dm6]	G	T	8.494e^-5	0.733	UTR_5_PRIME btl UTR_3_PRIME Pex1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	16491275	2L_16491275_SNP [dm3] 2L_16491275_SNP [dm6]	C	T	8.516e^-5	0.733	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2L	16491408	2L_16491408_SNP [dm3] 2L_16491408_SNP [dm6]	C	T	8.605e^-5	0.733	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2R	18110109	2R_18110109_SNP [dm3] 2R_22222604_SNP [dm6]	A	G	8.664e^-5	0.733	SPLICE_SITE_REGION Oatp58Db INTRON Oatp58Db	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19969516	3L_19969516_SNP [dm3] 3L_19976416_SNP [dm6]	A	C	8.742e^-5	0.733	INTRON Ac76E
3R	14380884	3R_14380884_SNP [dm3] 3R_18555162_SNP [dm6]	T	C	8.756e^-5	0.733	INTERGENIC
2R	18763061	2R_18763061_SNP [dm3] 2R_22875538_SNP [dm6]	A	C	8.795e^-5	0.733	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
3R	4184935	3R_4184935_SNP [dm3] 3R_8359213_SNP [dm6]	C	T	8.796e^-5	0.733	SYNONYMOUS_CODING stck DOWNSTREAM CG9684	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16497401	2L_16497401_SNP [dm3] 2L_16497401_SNP [dm6]	A	C	8.825e^-5	0.733	INTRON Tpr2
3R	19048922	3R_19048922_SNP [dm3] 3R_23223200_SNP [dm6]	T	C	8.861e^-5	0.733	INTRON cnc
3R	8350126	3R_8350126_SNP [dm3] 3R_12524404_SNP [dm6]	C	T	8.888e^-5	0.733	INTRON Octbeta3R
3R	9614103	3R_9614103_DEL [dm3] 3R_13788381_DEL [dm6]	TACCACCC	T	8.917e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14425168	2R_14425168_SNP [dm3] 2R_18537663_SNP [dm6]	G	A	8.945e^-5	0.733	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3324487	3R_3324487_SNP [dm3] 3R_7498765_SNP [dm6]	A	G	8.948e^-5	0.733	INTRON alpha-Est9
3R	20006816	3R_20006816_SNP [dm3] 3R_24181094_SNP [dm6]	A	C	9.026e^-5	0.733	UTR_3_PRIME CG13606 INTRON CG13606
X	887659	X_887659_SNP [dm3] X_993626_SNP [dm6]	C	T	9.053e^-5	0.733	INTERGENIC
2L	15403377	2L_15403377_SNP [dm3] 2L_15403377_SNP [dm6]	T	G	9.102e^-5	0.733	INTERGENIC
2R	18763272	2R_18763272_SNP [dm3] 2R_22875749_SNP [dm6]	C	G	9.214e^-5	0.733	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
X	7242578	X_7242578_SNP [dm3] X_7348545_SNP [dm6]	A	G	9.320e^-5	0.733	INTRON CR44357 & 1 other
3L	19967126	3L_19967126_DEL [dm3] 3L_19974026_DEL [dm6]	TATCTAATGTTGAA...	T	9.320e^-5	0.733	INTRON Ac76E
2R	10002482	2R_10002482_SNP [dm3] 2R_14114977_SNP [dm6]	T	C	9.331e^-5	0.733	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	25330584	3R_25330584_SNP [dm3] 3R_29504862_SNP [dm6]	A	C	9.453e^-5	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6473711	3R_6473711_SNP [dm3] 3R_10647989_SNP [dm6]	A	G	9.480e^-5	0.733	INTERGENIC
3R	4191573	3R_4191573_SNP [dm3] 3R_8365851_SNP [dm6]	C	G	9.484e^-5	0.733	NON_SYNONYMOUS_CODING CG45263 DOWNSTREAM CG45263	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	18259268	3L_18259268_SNP [dm3] 3L_18266168_SNP [dm6]	G	A	9.591e^-5	0.733	INTERGENIC
3R	18384118	3R_18384118_DEL [dm3] 3R_22558396_DEL [dm6]	TT	T	9.612e^-5	0.733	UTR_3_PRIME CG5278
3L	1993778	3L_1993778_DEL [dm3] 3L_1993778_DEL [dm6]	CCC	C	9.766e^-5	0.733	INTERGENIC
3R	13908243	3R_13908243_DEL [dm3] 3R_18082521_DEL [dm6]	TT	T	9.832e^-5	0.733	UTR_3_PRIME CG14317	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad
2L	12760060	2L_12760060_SNP [dm3] 2L_12760060_SNP [dm6]	T	A	9.922e^-5	0.733	DOWNSTREAM CG15483 INTERGENIC
3R	10003948	3R_10003948_SNP [dm3] 3R_14178226_SNP [dm6]	G	A	9.982e^-5	0.733	SYNONYMOUS_CODING Dop1R1
3R	13148362	3R_13148362_SNP [dm3] 3R_17322640_SNP [dm6]	A	G	1.002e^-4	0.733	INTRON beat-IIa
3R	12937789	3R_12937789_SNP [dm3] 3R_17112067_SNP [dm6]	C	G	1.016e^-4	0.733	INTRON cher
3R	16375868	3R_16375868_SNP [dm3] 3R_20550146_SNP [dm6]	C	T	1.023e^-4	0.733	INTRON Stat92E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
3R	8341839	3R_8341839_DEL [dm3] 3R_12516117_DEL [dm6]	AGGAACTTAAATACACAATT...	A	1.030e^-4	0.733	INTRON Octbeta3R
2R	2472955	2R_2472955_SNP [dm3] 2R_6585450_SNP [dm6]	G	A	1.030e^-4	0.733	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17590495	3L_17590495_SNP [dm3] 3L_17597395_SNP [dm6]	C	G	1.032e^-4	0.733	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2R	11353912	2R_11353912_SNP [dm3] 2R_15466407_SNP [dm6]	C	G	1.039e^-4	0.733	INTRON CG43729
2L	15086225	2L_15086225_SNP [dm3] 2L_15086225_SNP [dm6]	T	C	1.040e^-4	0.733	INTRON CG15270
3R	7728045	3R_7728045_SNP [dm3] 3R_11902323_SNP [dm6]	C	A	1.041e^-4	0.733	INTRON Cad87A
X	17649085	X_17649085_SNP [dm3] X_17755052_SNP [dm6]	A	G	1.056e^-4	0.733	INTERGENIC
2R	17787518	2R_17787518_SNP [dm3] 2R_21900013_SNP [dm6]	A	G	1.058e^-4	0.733	INTRON Fili	TF binding site BDTNP1_TFBS_dl
2R	17787634	2R_17787634_SNP [dm3] 2R_21900129_SNP [dm6]	C	T	1.058e^-4	0.733	INTRON Fili	TF binding site BDTNP1_TFBS_dl
3R	3366140	3R_3366140_SNP [dm3] 3R_7540418_SNP [dm6]	G	A	1.067e^-4	0.733	SYNONYMOUS_CODING alpha-Est3 UTR_3_PRIME alpha-Est3
2R	11353974	2R_11353974_SNP [dm3] 2R_15466469_SNP [dm6]	C	T	1.080e^-4	0.733	INTRON CG43729
2L	5449934	2L_5449934_SNP [dm3] 2L_5449934_SNP [dm6]	C	T	1.088e^-4	0.733	INTERGENIC
X	18924765	X_18924765_SNP [dm3] X_19030732_SNP [dm6]	G	A	1.089e^-4	0.733	INTERGENIC
3R	10190115	3R_10190115_DEL [dm3] 3R_14364393_DEL [dm6]	CC	C	1.092e^-4	0.733	INTRON NK7.1	TF binding site mE1_TFBS_HSA
2R	9541459	2R_9541459_SNP [dm3] 2R_13653954_SNP [dm6]	A	C	1.095e^-4	0.733	INTRON fas
X	8337144	X_8337144_SNP [dm3] X_8443111_SNP [dm6]	T	C	1.096e^-4	0.733	UPSTREAM CG12123 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5971713	X_5971713_SNP [dm3] X_6077680_SNP [dm6]	T	G	1.099e^-4	0.733	UTR_5_PRIME CG4666 UPSTREAM CG4666
3R	9614049	3R_9614049_SNP [dm3] 3R_13788327_SNP [dm6]	A	T	1.101e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14425063	2R_14425063_SNP [dm3] 2R_18537558_SNP [dm6]	C	T	1.103e^-4	0.733	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8591055	3L_8591055_SNP [dm3] 3L_8597955_SNP [dm6]	C	G	1.103e^-4	0.733	NON_SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_cad
2L	15738608	2L_15738608_SNP [dm3] 2L_15738608_SNP [dm6]	C	T	1.112e^-4	0.733	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15334264	3R_15334264_SNP [dm3] 3R_19508542_SNP [dm6]	C	T	1.114e^-4	0.733	UPSTREAM Dys INTRON Dys
2R	17236839	2R_17236839_SNP [dm3] 2R_21349334_SNP [dm6]	C	T	1.120e^-4	0.733	INTRON CG17974
X	19388615	X_19388615_SNP [dm3] X_19494582_SNP [dm6]	G	A	1.123e^-4	0.733	SYNONYMOUS_CODING ksh UPSTREAM CG12204 & 2 others DOWNSTREAM CR44340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18259341	3L_18259341_SNP [dm3] 3L_18266241_SNP [dm6]	T	G	1.126e^-4	0.733	INTERGENIC
X	5971733	X_5971733_SNP [dm3] X_6077700_SNP [dm6]	C	A	1.131e^-4	0.733	UTR_5_PRIME CG4666 UPSTREAM CG4666
3R	3879066	3R_3879066_SNP [dm3] 3R_8053344_SNP [dm6]	C	T	1.137e^-4	0.733	INTRON CG43060
X	17562477	X_17562477_SNP [dm3] X_17668444_SNP [dm6]	T	G	1.138e^-4	0.733	DOWNSTREAM CG12990 INTRON beta-Spec
3L	19378241	3L_19378241_INS [dm3] 3L_19385141_INS [dm6]	C	CATTTCCTAAAAAGTTA...	1.141e^-4	0.733	INTRON CG32206
2R	9592271	2R_9592271_SNP [dm3] 2R_13704766_SNP [dm6]	G	A	1.148e^-4	0.733	INTRON fas
X	18290430	X_18290430_SNP [dm3] X_18396397_SNP [dm6]	G	T	1.150e^-4	0.733	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10224232	3R_10224232_SNP [dm3] 3R_14398510_SNP [dm6]	G	A	1.156e^-4	0.733	INTRON cv-c
2L	5336458	2L_5336458_DEL [dm3] 2L_5336458_DEL [dm6]	TC	T	1.158e^-4	0.733	UPSTREAM fusl INTRON fusl
3L	19011909	3L_19011909_SNP [dm3] 3L_19018809_SNP [dm6]	G	A	1.158e^-4	0.733	INTRON nkd
3L	9766951	3L_9766951_SNP [dm3] 3L_9773851_SNP [dm6]	C	T	1.161e^-4	0.733	UPSTREAM CG8177 INTRON CG8177
2L	5276708	2L_5276708_SNP [dm3] 2L_5276708_SNP [dm6]	G	A	1.163e^-4	0.733	SYNONYMOUS_CODING Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1515967	2L_1515967_SNP [dm3] 2L_1515967_SNP [dm6]	C	T	1.173e^-4	0.733	DOWNSTREAM CG18132 INTERGENIC
3R	23321143	3R_23321143_SNP [dm3] 3R_27495421_SNP [dm6]	C	A	1.178e^-4	0.733	INTERGENIC
2R	12533740	2R_12533740_SNP [dm3] 2R_16646235_SNP [dm6]	C	T	1.183e^-4	0.733	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9999894	2R_9999894_SNP [dm3] 2R_14112389_SNP [dm6]	C	A	1.188e^-4	0.733	INTRON Prosap
X	19389110	X_19389110_SNP [dm3] X_19495077_SNP [dm6]	G	A	1.193e^-4	0.733	UPSTREAM CG12204 & 3 others DOWNSTREAM CR44340 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_kn
2L	4157388	2L_4157388_SNP [dm3] 2L_4157388_SNP [dm6]	T	C	1.196e^-4	0.733	INTERGENIC
2L	1892942	2L_1892942_SNP [dm3] 2L_1892942_SNP [dm6]	G	T	1.197e^-4	0.733	INTRON CG7337
2L	16540799	2L_16540799_SNP [dm3] 2L_16540799_SNP [dm6]	A	G	1.200e^-4	0.733	INTERGENIC
3L	11348894	3L_11348894_SNP [dm3] 3L_11355794_SNP [dm6]	C	G	1.201e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18217029	2R_18217029_SNP [dm3] 2R_22329524_SNP [dm6]	C	T	1.205e^-4	0.733	NON_SYNONYMOUS_CODING CG34207 UPSTREAM pgc DOWNSTREAM T3dh & 1 other
2L	15105185	2L_15105185_SNP [dm3] 2L_15105185_SNP [dm6]	G	C	1.207e^-4	0.733	INTERGENIC
X	18924167	X_18924167_SNP [dm3] X_19030134_SNP [dm6]	T	A	1.212e^-4	0.733	INTERGENIC
2L	4155301	2L_4155301_SNP [dm3] 2L_4155301_SNP [dm6]	G	A	1.212e^-4	0.733	INTERGENIC
2L	10706394	2L_10706394_SNP [dm3] 2L_10706394_SNP [dm6]	G	C	1.212e^-4	0.733	UPSTREAM Lip2 INTRON Lip2	TF binding site mE1_TFBS_inv
3L	17025185	3L_17025185_SNP [dm3] 3L_17032085_SNP [dm6]	C	G	1.213e^-4	0.733	UPSTREAM Ilp8 EXON CR45756	TF binding site mE1_TFBS_Trl
X	9753967	X_9753967_SNP [dm3] X_9859934_SNP [dm6]	G	C	1.216e^-4	0.733	INTERGENIC
2L	8654661	2L_8654661_DEL [dm3] 2L_8654661_DEL [dm6]	AGGACACTA	A	1.217e^-4	0.733	INTRON Sema-1a
3L	12327174	3L_12327174_SNP [dm3] 3L_12334074_SNP [dm6]	C	A	1.222e^-4	0.733	INTRON CG32105
3R	3389996	3R_3389996_SNP [dm3] 3R_7564274_SNP [dm6]	A	C	1.229e^-4	0.733	INTERGENIC
X	7242590	X_7242590_SNP [dm3] X_7348557_SNP [dm6]	A	G	1.232e^-4	0.733	INTRON CR44357 & 1 other
2L	15585639	2L_15585639_SNP [dm3] 2L_15585639_SNP [dm6]	T	C	1.235e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11663718	2R_11663718_SNP [dm3] 2R_15776213_SNP [dm6]	G	T	1.244e^-4	0.733	UPSTREAM Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3L	7543514	3L_7543514_SNP [dm3] 3L_7550414_SNP [dm6]	T	C	1.244e^-4	0.733	INTERGENIC
2L	526695	2L_526695_SNP [dm3] 2L_526695_SNP [dm6]	T	G	1.248e^-4	0.733	INTRON ush	regulatory region REDfly_CRMs
3R	20375725	3R_20375725_INS [dm3] 3R_24550003_INS [dm6]	G	GG	1.261e^-4	0.733	INTRON Esyt2
3R	9591014	3R_9591014_SNP [dm3] 3R_13765292_SNP [dm6]	G	T	1.267e^-4	0.733	UPSTREAM CG9312 DOWNSTREAM CG34383 INTERGENIC
2R	14765726	2R_14765726_SNP [dm3] 2R_18878221_SNP [dm6]	T	A	1.269e^-4	0.733	UPSTREAM sano INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8152399	2L_8152399_SNP [dm3] 2L_8152399_SNP [dm6]	G	A	1.270e^-4	0.733	INTRON CG8552 & 1 other
2L	5449874	2L_5449874_INS [dm3] 2L_5449874_INS [dm6]	T	TTCCGAAATATGGTTGTT...	1.277e^-4	0.733	INTERGENIC
3R	23900528	3R_23900528_DEL [dm3] 3R_28074806_DEL [dm6]	GCAAT	G	1.281e^-4	0.733	INTRON CG34362
3R	10232852	3R_10232852_SNP [dm3] 3R_14407130_SNP [dm6]	A	G	1.284e^-4	0.733	INTRON cv-c
2R	1600071	2R_1600071_SNP [dm3] 2R_5712566_SNP [dm6]	C	T	1.285e^-4	0.733	INTRON ap	TF binding site mE1_TFBS_cad
2R	14885709	2R_14885709_SNP [dm3] 2R_18998204_SNP [dm6]	C	T	1.290e^-4	0.733	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14950315	3R_14950315_SNP [dm3] 3R_19124593_SNP [dm6]	A	T	1.291e^-4	0.733	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_chinmo
2R	14424964	2R_14424964_SNP [dm3] 2R_18537459_SNP [dm6]	G	T	1.292e^-4	0.733	NON_SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9614099	3R_9614099_INS [dm3] 3R_13788377_INS [dm6]	A	ATGGT	1.298e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15470969	X_15470969_SNP [dm3] X_15576936_SNP [dm6]	C	T	1.301e^-4	0.733	DOWNSTREAM cerv EXON betaNACtes5
2R	11353867	2R_11353867_SNP [dm3] 2R_15466362_SNP [dm6]	G	A	1.306e^-4	0.733	INTRON CG43729
3R	16522330	3R_16522330_SNP [dm3] 3R_20696608_SNP [dm6]	G	T	1.311e^-4	0.733	INTRON Oamb
2L	16540826	2L_16540826_SNP [dm3] 2L_16540826_SNP [dm6]	A	G	1.318e^-4	0.733	INTERGENIC
3R	13315678	3R_13315678_SNP [dm3] 3R_17489956_SNP [dm6]	G	C	1.318e^-4	0.733	INTRON Dscam3
3R	3889403	3R_3889403_SNP [dm3] 3R_8063681_SNP [dm6]	A	G	1.319e^-4	0.733	INTRON mAChR-B
3L	5761968	3L_5761968_SNP [dm3] 3L_5768868_SNP [dm6]	G	A	1.327e^-4	0.733	UPSTREAM scny & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2L	15095242	2L_15095242_SNP [dm3] 2L_15095242_SNP [dm6]	T	C	1.339e^-4	0.733	INTRON CG15270
3R	4710595	3R_4710595_SNP [dm3] 3R_8884873_SNP [dm6]	T	C	1.341e^-4	0.733	INTRON pyd
2L	4146438	2L_4146438_SNP [dm3] 2L_4146438_SNP [dm6]	A	T	1.341e^-4	0.733	INTERGENIC
3L	12947947	3L_12947947_SNP [dm3] 3L_12954847_SNP [dm6]	A	G	1.341e^-4	0.733	UPSTREAM CG10752 INTERGENIC
3R	24938608	3R_24938608_SNP [dm3] 3R_29112886_SNP [dm6]	T	G	1.342e^-4	0.733	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14380904	3R_14380904_SNP [dm3] 3R_18555182_SNP [dm6]	A	G	1.342e^-4	0.733	INTERGENIC
X	3169107	X_3169107_SNP [dm3] X_3275074_SNP [dm6]	G	A	1.343e^-4	0.733	INTRON dnc
3R	5000946	3R_5000946_INS [dm3] 3R_9175224_INS [dm6]	A	AA	1.350e^-4	0.733	INTRON pum
2L	5908566	2L_5908566_SNP [dm3] 2L_5908566_SNP [dm6]	T	C	1.352e^-4	0.733	SYNONYMOUS_CODING bchs DOWNSTREAM CG14000	TF binding site BDTNP1_TFBS_dl
3L	8816309	3L_8816309_SNP [dm3] 3L_8823209_SNP [dm6]	C	T	1.356e^-4	0.733	INTERGENIC
2L	1025473	2L_1025473_SNP [dm3] 2L_1025473_SNP [dm6]	T	C	1.369e^-4	0.733	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14434238	2R_14434238_INS [dm3] 2R_18546733_INS [dm6]	A	ACTTTTAT	1.369e^-4	0.733	INTRON Rgk2
X	17654512	X_17654512_SNP [dm3] X_17760479_SNP [dm6]	C	T	1.369e^-4	0.733	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19962531	3L_19962531_SNP [dm3] 3L_19969431_SNP [dm6]	G	A	1.370e^-4	0.733	INTRON Ac76E
2L	3930729	2L_3930729_SNP [dm3] 2L_3930729_SNP [dm6]	A	G	1.371e^-4	0.733	INTRON fred
2R	10897084	2R_10897084_SNP [dm3] 2R_15009579_SNP [dm6]	A	C	1.372e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5449839	2L_5449839_SNP [dm3] 2L_5449839_SNP [dm6]	A	T	1.374e^-4	0.733	INTERGENIC
3L	9179724	3L_9179724_SNP [dm3] 3L_9186624_SNP [dm6]	G	A	1.378e^-4	0.733	INTERGENIC
3L	17769283	3L_17769283_SNP [dm3] 3L_17776183_SNP [dm6]	C	T	1.389e^-4	0.733	INTERGENIC
3R	23604446	3R_23604446_SNP [dm3] 3R_27778724_SNP [dm6]	C	T	1.389e^-4	0.733	INTRON CG34353	TF binding site mE1_TFBS_chinmo
X	4087844	X_4087844_SNP [dm3] X_4193811_SNP [dm6]	C	G	1.401e^-4	0.733	INTRON Fas2
3R	25831481	3R_25831481_SNP [dm3] 3R_30005759_SNP [dm6]	T	A	1.401e^-4	0.733	UPSTREAM CG7911 DOWNSTREAM CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8480610	2R_8480610_SNP [dm3] 2R_12593105_SNP [dm6]	A	G	1.412e^-4	0.733	UPSTREAM Amph & 1 other DOWNSTREAM CR45279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15095184	2L_15095184_SNP [dm3] 2L_15095184_SNP [dm6]	T	A	1.418e^-4	0.733	SPLICE_SITE_REGION CG15270 INTRON CG15270
2L	7067574	2L_7067574_SNP [dm3] 2L_7067574_SNP [dm6]	A	G	1.418e^-4	0.733	UPSTREAM CG11289 INTERGENIC
3L	8308933	3L_8308933_SNP [dm3] 3L_8315833_SNP [dm6]	G	C	1.420e^-4	0.733	UPSTREAM CG7185 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17287060	3L_17287060_SNP [dm3] 3L_17293960_SNP [dm6]	T	G	1.422e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9976034	2R_9976034_SNP [dm3] 2R_14088529_SNP [dm6]	A	G	1.426e^-4	0.733	INTRON Prosap
X	7242586	X_7242586_SNP [dm3] X_7348553_SNP [dm6]	G	T	1.429e^-4	0.733	INTRON CR44357 & 1 other
2L	12403932	2L_12403932_SNP [dm3] 2L_12403932_SNP [dm6]	A	G	1.430e^-4	0.733	SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24938613	3R_24938613_SNP [dm3] 3R_29112891_SNP [dm6]	T	C	1.434e^-4	0.733	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4710798	3R_4710798_SNP [dm3] 3R_8885076_SNP [dm6]	C	T	1.435e^-4	0.733	INTRON pyd
2R	17236834	2R_17236834_SNP [dm3] 2R_21349329_SNP [dm6]	G	T	1.437e^-4	0.733	INTRON CG17974
3L	1525287	3L_1525287_SNP [dm3] 3L_1525287_SNP [dm6]	A	G	1.443e^-4	0.733	SPLICE_SITE_REGION CG12090 SYNONYMOUS_CODING CG12090
2L	7063008	2L_7063008_INS [dm3] 2L_7063008_INS [dm6]	A	AA	1.450e^-4	0.733	UTR_3_PRIME Mnn1 UPSTREAM Sem1 DOWNSTREAM Mnn1
X	8096193	X_8096193_SNP [dm3] X_8202160_SNP [dm6]	A	G	1.451e^-4	0.733	INTRON sdt	TF binding site mE1_TFBS_inv
X	7242583	X_7242583_SNP [dm3] X_7348550_SNP [dm6]	T	C	1.452e^-4	0.733	INTRON CR44357 & 1 other
2L	17403064	2L_17403064_SNP [dm3] 2L_17403064_SNP [dm6]	C	T	1.453e^-4	0.733	INTRON CLIP-190
2L	16260345	2L_16260345_SNP [dm3] 2L_16260345_SNP [dm6]	A	G	1.454e^-4	0.733	SYNONYMOUS_CODING twe DOWNSTREAM EndoGI	TF binding site mE1_TFBS_cad
2R	18892477	2R_18892477_SNP [dm3] 2R_23004954_SNP [dm6]	C	T	1.456e^-4	0.733	INTRON twi
3R	7768516	3R_7768516_SNP [dm3] 3R_11942794_SNP [dm6]	T	C	1.460e^-4	0.733	INTRON Cad87A
2R	1610618	2R_1610618_DEL [dm3] 2R_5723113_DEL [dm6]	ACAACTTGACGATC...	A	1.462e^-4	0.733	INTRON ap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	20019557	X_20019557_SNP [dm3] X_20125524_SNP [dm6]	C	T	1.468e^-4	0.733	DOWNSTREAM CG34331 INTERGENIC
2L	9154896	2L_9154896_SNP [dm3] 2L_9154896_SNP [dm6]	A	G	1.471e^-4	0.733	INTRON CG32982
2L	16540828	2L_16540828_SNP [dm3] 2L_16540828_SNP [dm6]	T	C	1.473e^-4	0.733	INTERGENIC
3L	3485416	3L_3485416_DEL [dm3] 3L_3485416_DEL [dm6]	CA	C	1.475e^-4	0.733	UPSTREAM CG43074 & 1 other INTRON CG42324
3R	14125359	3R_14125359_SNP [dm3] 3R_18299637_SNP [dm6]	T	C	1.478e^-4	0.733	SYNONYMOUS_CODING Dlc90F UPSTREAM l_3_05822 DOWNSTREAM CG18600	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12633956	3L_12633956_SNP [dm3] 3L_12640856_SNP [dm6]	A	G	1.485e^-4	0.733	INTRON CR32111
3R	13147915	3R_13147915_SNP [dm3] 3R_17322193_SNP [dm6]	G	A	1.486e^-4	0.733	INTRON beat-IIa	TF binding site mE1_TFBS_inv
X	3440357	X_3440357_SNP [dm3] X_3546324_SNP [dm6]	C	T	1.493e^-4	0.733	UPSTREAM CR34335 INTRON CG32791	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24413970	3R_24413970_SNP [dm3] 3R_28588248_SNP [dm6]	T	C	1.493e^-4	0.733	DOWNSTREAM MRE23 EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15751255	2L_15751255_SNP [dm3] 2L_15751255_SNP [dm6]	T	G	1.493e^-4	0.733	UPSTREAM l_2_35Di DOWNSTREAM snRNA:U5:35D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17785030	2R_17785030_SNP [dm3] 2R_21897525_SNP [dm6]	T	C	1.507e^-4	0.733	INTRON Fili
3R	9786981	3R_9786981_SNP [dm3] 3R_13961259_SNP [dm6]	T	G	1.513e^-4	0.733	NON_SYNONYMOUS_CODING CG9925 DOWNSTREAM Ipp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15231275	3L_15231275_SNP [dm3] 3L_15238175_SNP [dm6]	C	T	1.517e^-4	0.733	SYNONYMOUS_CODING Tollo	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	3310344	3R_3310344_SNP [dm3] 3R_7484622_SNP [dm6]	C	T	1.520e^-4	0.733	INTERGENIC
3R	5232815	3R_5232815_SNP [dm3] 3R_9407093_SNP [dm6]	T	A	1.542e^-4	0.733	DOWNSTREAM CG44261 INTRON CG8135 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16792099	2R_16792099_SNP [dm3] 2R_20904594_SNP [dm6]	A	T	1.544e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2167014	3R_2167014_DEL [dm3] 3R_6341292_DEL [dm6]	ATCT	C	1.551e^-4	0.733	UTR_3_PRIME Osi20 UPSTREAM CG17917	TF binding site mE1_TFBS_cad
X	10782877	X_10782877_SNP [dm3] X_10888844_SNP [dm6]	T	G	1.552e^-4	0.733	INTRON Ork1
X	7242610	X_7242610_SNP [dm3] X_7348577_SNP [dm6]	G	T	1.552e^-4	0.733	INTRON CR44357 & 1 other
3R	23321310	3R_23321310_SNP [dm3] 3R_27495588_SNP [dm6]	T	C	1.553e^-4	0.733	INTERGENIC
2L	11253369	2L_11253369_SNP [dm3] 2L_11253369_SNP [dm6]	A	C	1.553e^-4	0.733	INTRON ab
2L	11823422	2L_11823422_SNP [dm3] 2L_11823422_SNP [dm6]	G	A	1.555e^-4	0.733	INTRON Pde1c
3L	17485609	3L_17485609_INS [dm3] 3L_17492509_INS [dm6]	A	AA	1.560e^-4	0.733	INTRON Oatp74D
3L	10808001	3L_10808001_DEL [dm3] 3L_10814901_DEL [dm6]	GCG	G	1.561e^-4	0.733	UTR_5_PRIME CG42831
2L	2839108	2L_2839108_SNP [dm3] 2L_2839108_SNP [dm6]	C	T	1.562e^-4	0.733	SYNONYMOUS_CODING Cpr23B DOWNSTREAM CR45342	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15065586	2L_15065586_DEL [dm3] 2L_15065586_DEL [dm6]	CAAGCCCT	C	1.570e^-4	0.733	INTRON vas & 1 other
2R	18769753	2R_18769753_SNP [dm3] 2R_22882230_SNP [dm6]	G	A	1.570e^-4	0.733	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26741624	3R_26741624_SNP [dm3] 3R_30915902_SNP [dm6]	C	T	1.573e^-4	0.733	INTRON Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26741631	3R_26741631_SNP [dm3] 3R_30915909_SNP [dm6]	T	A	1.573e^-4	0.733	INTRON Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15445595	3R_15445595_SNP [dm3] 3R_19619873_SNP [dm6]	C	A	1.575e^-4	0.733	INTRON CG6231
2R	1610635	2R_1610635_SNP [dm3] 2R_5723130_SNP [dm6]	A	G	1.579e^-4	0.733	INTRON ap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	14870586	2L_14870586_SNP [dm3] 2L_14870586_SNP [dm6]	G	A	1.581e^-4	0.733	UTR_3_PRIME CG4480 DOWNSTREAM CG4480
2R	14221775	2R_14221775_SNP [dm3] 2R_18334270_SNP [dm6]	G	A	1.591e^-4	0.733	INTRON sbb
3R	20914909	3R_20914909_SNP [dm3] 3R_25089187_SNP [dm6]	T	C	1.599e^-4	0.733	INTERGENIC
2R	12810424	2R_12810424_SNP [dm3] 2R_16922919_SNP [dm6]	C	T	1.602e^-4	0.733	INTERGENIC
3L	17816835	3L_17816835_SNP [dm3] 3L_17823735_SNP [dm6]	G	C	1.606e^-4	0.733	UPSTREAM Ir75c INTRON Grd
3L	19969135	3L_19969135_SNP [dm3] 3L_19976035_SNP [dm6]	T	A	1.613e^-4	0.733	INTRON Ac76E
3L	9705362	3L_9705362_SNP [dm3] 3L_9712262_SNP [dm6]	T	C	1.635e^-4	0.733	INTRON SH3PX1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	9389916	X_9389916_SNP [dm3] X_9495883_SNP [dm6]	A	G	1.636e^-4	0.733	UTR_5_PRIME mgl INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	5449864	2L_5449864_SNP [dm3] 2L_5449864_SNP [dm6]	T	C	1.636e^-4	0.733	INTERGENIC
X	19389386	X_19389386_SNP [dm3] X_19495353_SNP [dm6]	G	A	1.638e^-4	0.733	UPSTREAM CG12204 & 3 others EXON CR44340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
3L	13693043	3L_13693043_SNP [dm3] 3L_13699943_SNP [dm6]	C	T	1.639e^-4	0.733	INTRON bru-3
3R	3389272	3R_3389272_SNP [dm3] 3R_7563550_SNP [dm6]	G	T	1.641e^-4	0.733	INTERGENIC
3L	10713747	3L_10713747_SNP [dm3] 3L_10720647_SNP [dm6]	C	G	1.641e^-4	0.733	INTERGENIC
3L	14154659	3L_14154659_SNP [dm3] 3L_14161559_SNP [dm6]	C	G	1.642e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs
3L	3054181	3L_3054181_SNP [dm3] 3L_3054181_SNP [dm6]	C	T	1.662e^-4	0.733	SYNONYMOUS_CODING CG1271 UPSTREAM CG16753	TF binding site mE1_TFBS_sens
3R	20886391	3R_20886391_SNP [dm3] 3R_25060669_SNP [dm6]	G	T	1.668e^-4	0.733	INTRON Unc-13-4B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18222747	X_18222747_SNP [dm3] X_18328714_SNP [dm6]	A	G	1.679e^-4	0.733	INTRON CG6123
X	3799207	X_3799207_INS [dm3] X_3905174_INS [dm6]	T	TT	1.680e^-4	0.733	INTRON CG42541
3R	10233117	3R_10233117_SNP [dm3] 3R_14407395_SNP [dm6]	C	A	1.686e^-4	0.733	INTRON cv-c
2R	7273096	2R_7273096_SNP [dm3] 2R_11385591_SNP [dm6]	G	A	1.687e^-4	0.733	SYNONYMOUS_CODING sprt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6396438	3L_6396438_SNP [dm3] 3L_6403338_SNP [dm6]	G	C	1.690e^-4	0.733	INTRON CG42747
2L	11813713	2L_11813713_DEL [dm3] 2L_11813713_DEL [dm6]	TT	T	1.693e^-4	0.733	DOWNSTREAM Pde1c INTRON CycY	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	3328253	3R_3328253_SNP [dm3] 3R_7502531_SNP [dm6]	A	G	1.693e^-4	0.733	UPSTREAM CG1287 INTRON alpha-Est9
X	4573826	X_4573826_SNP [dm3] X_4679793_SNP [dm6]	C	A	1.698e^-4	0.733	UPSTREAM rap DOWNSTREAM Pp2C1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	13611537	X_13611537_SNP [dm3] X_13717504_SNP [dm6]	C	T	1.704e^-4	0.733	SYNONYMOUS_CODING NnaD INTRON CG9940	TF binding site mE1_TFBS_chinmo
2L	15585853	2L_15585853_SNP [dm3] 2L_15585853_SNP [dm6]	G	A	1.704e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16540845	2L_16540845_SNP [dm3] 2L_16540845_SNP [dm6]	G	T	1.705e^-4	0.733	INTERGENIC
3L	577186	3L_577186_SNP [dm3] 3L_577186_SNP [dm6]	C	A	1.717e^-4	0.733	UTR_3_PRIME hipk
X	4087849	X_4087849_SNP [dm3] X_4193816_SNP [dm6]	A	C	1.717e^-4	0.733	INTRON Fas2
2R	1610634	2R_1610634_SNP [dm3] 2R_5723129_SNP [dm6]	A	T	1.718e^-4	0.733	INTRON ap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	1610638	2R_1610638_SNP [dm3] 2R_5723133_SNP [dm6]	A	T	1.718e^-4	0.733	INTRON ap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	1610648	2R_1610648_SNP [dm3] 2R_5723143_SNP [dm6]	G	C	1.718e^-4	0.733	INTRON ap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	2474391	2R_2474391_SNP [dm3] 2R_6586886_SNP [dm6]	G	A	1.720e^-4	0.733	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	16625173	3L_16625173_SNP [dm3] 3L_16632073_SNP [dm6]	C	T	1.722e^-4	0.733	INTRON Abl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17590479	3L_17590479_SNP [dm3] 3L_17597379_SNP [dm6]	G	A	1.723e^-4	0.733	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2L	15069720	2L_15069720_SNP [dm3] 2L_15069720_SNP [dm6]	C	A	1.727e^-4	0.733	SYNONYMOUS_CODING vas INTRON vig & 1 other	TF binding site mE1_TFBS_sens
3R	9593697	3R_9593697_DEL [dm3] 3R_13767975_DEL [dm6]	AA	T	1.734e^-4	0.733	DOWNSTREAM CG9312 INTRON Cht5
3R	9614268	3R_9614268_SNP [dm3] 3R_13788546_SNP [dm6]	C	T	1.737e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6396416	3L_6396416_SNP [dm3] 3L_6403316_SNP [dm6]	G	A	1.744e^-4	0.733	INTRON CG42747
2L	13153980	2L_13153980_SNP [dm3] 2L_13153980_SNP [dm6]	A	G	1.764e^-4	0.733	INTERGENIC
3R	15457104	3R_15457104_SNP [dm3] 3R_19631382_SNP [dm6]	G	A	1.776e^-4	0.733	INTRON CG6231
2L	5331767	2L_5331767_SNP [dm3] 2L_5331767_SNP [dm6]	A	G	1.784e^-4	0.733	SYNONYMOUS_CODING fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20512271	3R_20512271_SNP [dm3] 3R_24686549_SNP [dm6]	G	A	1.787e^-4	0.733	INTRON slo
3R	3767875	3R_3767875_SNP [dm3] 3R_7942153_SNP [dm6]	T	A	1.790e^-4	0.733	INTRON dsx
3R	25178678	3R_25178678_SNP [dm3] 3R_29352956_SNP [dm6]	C	T	1.796e^-4	0.733	INTERGENIC
2R	1610646	2R_1610646_SNP [dm3] 2R_5723141_SNP [dm6]	A	T	1.799e^-4	0.733	INTRON ap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	20378008	2R_20378008_SNP [dm3] 2R_24490485_SNP [dm6]	T	A	1.803e^-4	0.733	UTR_3_PRIME CG13579
X	9056993	X_9056993_SNP [dm3] X_9162960_SNP [dm6]	C	G	1.811e^-4	0.733	SYNONYMOUS_CODING CG44532 UPSTREAM Zpr1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9590447	3R_9590447_SNP [dm3] 3R_13764725_SNP [dm6]	A	G	1.815e^-4	0.733	DOWNSTREAM CG34383 INTERGENIC
2L	17516832	2L_17516832_SNP [dm3] 2L_17516832_SNP [dm6]	C	T	1.819e^-4	0.733	SPLICE_SITE_REGION Dhc36C SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
2R	1610637	2R_1610637_SNP [dm3] 2R_5723132_SNP [dm6]	A	C	1.819e^-4	0.733	INTRON ap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	3398070	2L_3398070_SNP [dm3] 2L_3398070_SNP [dm6]	T	C	1.824e^-4	0.733	UTR_5_PRIME CG34175 UPSTREAM CR44792
2L	3960995	2L_3960995_SNP [dm3] 2L_3960995_SNP [dm6]	A	C	1.827e^-4	0.733	INTRON fred
2R	18217124	2R_18217124_SNP [dm3] 2R_22329619_SNP [dm6]	G	A	1.830e^-4	0.733	SYNONYMOUS_CODING CG34207 UPSTREAM pgc DOWNSTREAM T3dh & 1 other
3R	23470681	3R_23470681_SNP [dm3] 3R_27644959_SNP [dm6]	C	G	1.830e^-4	0.733	INTRON tau	TF binding site BDTNP1_TFBS_prd
3R	9674049	3R_9674049_SNP [dm3] 3R_13848327_SNP [dm6]	G	A	1.836e^-4	0.733	INTERGENIC
3L	9669689	3L_9669689_SNP [dm3] 3L_9676589_SNP [dm6]	T	A	1.849e^-4	0.733	INTRON fry	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7067893	2L_7067893_SNP [dm3] 2L_7067893_SNP [dm6]	T	G	1.862e^-4	0.733	UPSTREAM CG11289 INTERGENIC
3R	16629765	3R_16629765_SNP [dm3] 3R_20804043_SNP [dm6]	A	C	1.862e^-4	0.733	INTRON Syp
2R	18763283	2R_18763283_SNP [dm3] 2R_22875760_SNP [dm6]	T	C	1.868e^-4	0.733	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
3R	10599739	3R_10599739_SNP [dm3] 3R_14774017_SNP [dm6]	A	C	1.875e^-4	0.733	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7272994	2R_7272994_SNP [dm3] 2R_11385489_SNP [dm6]	T	A	1.879e^-4	0.733	INTRON sprt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10226755	3R_10226755_SNP [dm3] 3R_14401033_SNP [dm6]	C	T	1.891e^-4	0.733	INTRON cv-c
3R	5428266	3R_5428266_SNP [dm3] 3R_9602544_SNP [dm6]	G	A	1.893e^-4	0.733	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9674907	3R_9674907_SNP [dm3] 3R_13849185_SNP [dm6]	C	T	1.902e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18943962	2R_18943962_SNP [dm3] 2R_23056439_SNP [dm6]	T	G	1.904e^-4	0.733	INTRON CG44252
2L	6586717	2L_6586717_SNP [dm3] 2L_6586717_SNP [dm6]	T	C	1.907e^-4	0.733	UTR_5_PRIME CG11319
3L	6622065	3L_6622065_SNP [dm3] 3L_6628965_SNP [dm6]	C	T	1.907e^-4	0.733	SYNONYMOUS_CODING GluRIA
3L	16195372	3L_16195372_INS [dm3] 3L_16202272_INS [dm6]	C	CC	1.909e^-4	0.733	DOWNSTREAM CG33690 INTERGENIC
3R	10232853	3R_10232853_SNP [dm3] 3R_14407131_SNP [dm6]	T	A	1.909e^-4	0.733	INTRON cv-c
3L	9696972	3L_9696972_INS [dm3] 3L_9703872_INS [dm6]	T	TGTT	1.911e^-4	0.733	UPSTREAM CG16711 & 1 other INTERGENIC
3L	7307505	3L_7307505_SNP [dm3] 3L_7314405_SNP [dm6]	C	T	1.913e^-4	0.733	INTERGENIC
3L	8812542	3L_8812542_SNP [dm3] 3L_8819442_SNP [dm6]	C	T	1.928e^-4	0.733	INTERGENIC
X	10961660	X_10961660_SNP [dm3] X_11067627_SNP [dm6]	G	T	1.938e^-4	0.733	INTRON CG15203
3L	2093174	3L_2093174_SNP [dm3] 3L_2093174_SNP [dm6]	A	T	1.941e^-4	0.733	INTRON sls
X	17562507	X_17562507_SNP [dm3] X_17668474_SNP [dm6]	C	A	1.942e^-4	0.733	DOWNSTREAM CG12990 INTRON beta-Spec
3L	9629165	3L_9629165_SNP [dm3] 3L_9636065_SNP [dm6]	G	C	1.943e^-4	0.733	SYNONYMOUS_CODING fry
3L	5641836	3L_5641836_SNP [dm3] 3L_5648736_SNP [dm6]	A	T	1.945e^-4	0.733	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad
3L	2313500	3L_2313500_SNP [dm3] 3L_2313500_SNP [dm6]	G	C	1.945e^-4	0.733	INTERGENIC
3R	9614046	3R_9614046_SNP [dm3] 3R_13788324_SNP [dm6]	T	C	1.948e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15354070	3R_15354070_SNP [dm3] 3R_19528348_SNP [dm6]	G	T	1.948e^-4	0.733	INTRON Dys
2R	18631203	2R_18631203_SNP [dm3] 2R_22743698_SNP [dm6]	C	T	1.952e^-4	0.733	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13162987	2R_13162987_SNP [dm3] 2R_17275482_SNP [dm6]	T	A	1.957e^-4	0.733	UTR_5_PRIME mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15548697	2R_15548697_SNP [dm3] 2R_19661192_SNP [dm6]	A	G	1.960e^-4	0.733	UPSTREAM mir-6-3 & 2 others DOWNSTREAM mir-5 & 4 others EXON CR44504 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9375466	2R_9375466_SNP [dm3] 2R_13487961_SNP [dm6]	T	A	1.976e^-4	0.733	INTRON bbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23126717	3R_23126717_SNP [dm3] 3R_27300995_SNP [dm6]	A	T	1.977e^-4	0.733	INTRON CG3339	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	5018365	3R_5018365_DEL [dm3] 3R_9192643_DEL [dm6]	TGCAC	T	1.983e^-4	0.733	INTRON pum
2R	12967426	2R_12967426_SNP [dm3] 2R_17079921_SNP [dm6]	G	T	1.983e^-4	0.733	INTRON CG30460
2L	11442585	2L_11442585_SNP [dm3] 2L_11442585_SNP [dm6]	A	G	1.983e^-4	0.733	INTRON salm
2R	14507877	2R_14507877_SNP [dm3] 2R_18620372_SNP [dm6]	T	A	1.987e^-4	0.733	DOWNSTREAM Atg7 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23537152	3R_23537152_SNP [dm3] 3R_27711430_SNP [dm6]	T	C	1.996e^-4	0.733	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15457041	3R_15457041_SNP [dm3] 3R_19631319_SNP [dm6]	A	G	1.998e^-4	0.733	INTRON CG6231
3R	15445351	3R_15445351_SNP [dm3] 3R_19619629_SNP [dm6]	G	A	1.999e^-4	0.733	INTRON CG6231
X	20583091	X_20583091_DEL [dm3] X_20712064_DEL [dm6]	CCAACATAC	C	1.999e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs
X	16083294	X_16083294_DEL [dm3] X_16189261_DEL [dm6]	CATTTAA	AGG	2.003e^-4	0.733	INTERGENIC
3R	23473368	3R_23473368_DEL [dm3] 3R_27647646_DEL [dm6]	TGGAT	T	2.009e^-4	0.733	UPSTREAM tau INTRON tau
2R	15812572	2R_15812572_SNP [dm3] 2R_19925067_SNP [dm6]	C	G	2.011e^-4	0.733	DOWNSTREAM CR44626 INTERGENIC
3R	19179306	3R_19179306_SNP [dm3] 3R_23353584_SNP [dm6]	C	T	2.021e^-4	0.733	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14012649	X_14012649_SNP [dm3] X_14118616_SNP [dm6]	A	G	2.025e^-4	0.733	UPSTREAM tRNA:S7:12Eg INTERGENIC	TF binding site mE1_TFBS_HSA
3R	17549537	3R_17549537_SNP [dm3] 3R_21723815_SNP [dm6]	G	A	2.029e^-4	0.733	DOWNSTREAM CR44096 INTERGENIC
X	18667235	X_18667235_SNP [dm3] X_18773202_SNP [dm6]	C	A	2.032e^-4	0.733	INTRON CCKLR-17D3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	5001114	3R_5001114_SNP [dm3] 3R_9175392_SNP [dm6]	C	A	2.037e^-4	0.733	INTRON pum
3R	24938628	3R_24938628_SNP [dm3] 3R_29112906_SNP [dm6]	T	A	2.055e^-4	0.733	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19769760	3L_19769760_DEL [dm3] 3L_19776660_DEL [dm6]	GGAACATTAAG...	G	2.059e^-4	0.733	INTRON CG42637 & 1 other
3L	14274256	3L_14274256_SNP [dm3] 3L_14281156_SNP [dm6]	T	G	2.066e^-4	0.733	INTRON fz
3R	16150407	3R_16150407_SNP [dm3] 3R_20324685_SNP [dm6]	G	T	2.072e^-4	0.733	UTR_3_PRIME CG4360 DOWNSTREAM CG42668
3R	16151016	3R_16151016_SNP [dm3] 3R_20325294_SNP [dm6]	T	A	2.072e^-4	0.733	UTR_3_PRIME CG4360
3L	8080272	3L_8080272_SNP [dm3] 3L_8087172_SNP [dm6]	C	A	2.074e^-4	0.733	DOWNSTREAM CG7565 INTRON Ect4
3R	13037400	3R_13037400_SNP [dm3] 3R_17211678_SNP [dm6]	A	G	2.077e^-4	0.733	INTERGENIC
X	7240881	X_7240881_SNP [dm3] X_7346848_SNP [dm6]	T	A	2.078e^-4	0.733	UTR_3_PRIME CG15034 INTRON CR44357 & 1 other
3R	25844390	3R_25844390_SNP [dm3] 3R_30018668_SNP [dm6]	A	T	2.079e^-4	0.733	INTRON Mgat2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2070578	3L_2070578_SNP [dm3] 3L_2070578_SNP [dm6]	G	A	2.079e^-4	0.733	NON_SYNONYMOUS_CODING sls INTRON sls
2R	13176352	2R_13176352_SNP [dm3] 2R_17288847_SNP [dm6]	C	T	2.088e^-4	0.733	INTRON mbl
2L	15095125	2L_15095125_SNP [dm3] 2L_15095125_SNP [dm6]	A	C	2.089e^-4	0.733	SYNONYMOUS_CODING CG15270
2R	5342725	2R_5342725_SNP [dm3] 2R_9455220_SNP [dm6]	T	C	2.097e^-4	0.733	UPSTREAM CG33757 INTRON Camta
2L	1013219	2L_1013219_DEL [dm3] 2L_1013219_DEL [dm6]	TCTTGTAT	T	2.102e^-4	0.733	UTR_3_PRIME IA-2
3R	17029158	3R_17029158_SNP [dm3] 3R_21203436_SNP [dm6]	A	T	2.117e^-4	0.733	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	6396476	3L_6396476_SNP [dm3] 3L_6403376_SNP [dm6]	T	C	2.117e^-4	0.733	INTRON CG42747
2L	3085159	2L_3085159_SNP [dm3] 2L_3085159_SNP [dm6]	C	T	2.119e^-4	0.733	INTRON toc
2L	1481152	2L_1481152_SNP [dm3] 2L_1481152_SNP [dm6]	G	A	2.130e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
3L	20740496	3L_20740496_SNP [dm3] 3L_20747396_SNP [dm6]	C	A	2.130e^-4	0.733	INTERGENIC
3R	14811271	3R_14811271_SNP [dm3] 3R_18985549_SNP [dm6]	T	A	2.147e^-4	0.733	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18943981	2R_18943981_SNP [dm3] 2R_23056458_SNP [dm6]	G	T	2.148e^-4	0.733	INTRON CG44252
X	14362040	X_14362040_SNP [dm3] X_14468007_SNP [dm6]	C	T	2.157e^-4	0.733	INTERGENIC
2L	14865431	2L_14865431_SNP [dm3] 2L_14865431_SNP [dm6]	G	C	2.159e^-4	0.733	INTERGENIC
2L	11442707	2L_11442707_SNP [dm3] 2L_11442707_SNP [dm6]	A	C	2.166e^-4	0.733	INTRON salm
2L	7103568	2L_7103568_SNP [dm3] 2L_7103568_SNP [dm6]	C	G	2.174e^-4	0.733	INTRON Pvf3
2R	13501831	2R_13501831_DEL [dm3] 2R_17614326_DEL [dm6]	CACGC	C	2.178e^-4	0.733	INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	14832720	3R_14832720_SNP [dm3] 3R_19006998_SNP [dm6]	A	G	2.179e^-4	0.733	INTRON gukh
2L	4149267	2L_4149267_SNP [dm3] 2L_4149267_SNP [dm6]	C	G	2.183e^-4	0.733	UPSTREAM CG2955 INTERGENIC
3R	16616991	3R_16616991_SNP [dm3] 3R_20791269_SNP [dm6]	A	T	2.191e^-4	0.733	INTRON Syp	TF binding site BDTNP1_TFBS_twi
X	15024795	X_15024795_SNP [dm3] X_15130762_SNP [dm6]	C	T	2.191e^-4	0.733	INTRON drd
X	2552245	X_2552245_SNP [dm3] X_2658212_SNP [dm6]	G	A	2.194e^-4	0.733	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5449866	2L_5449866_SNP [dm3] 2L_5449866_SNP [dm6]	G	C	2.201e^-4	0.733	INTERGENIC
2L	9154834	2L_9154834_SNP [dm3] 2L_9154834_SNP [dm6]	G	A	2.210e^-4	0.733	INTRON CG32982
X	7897589	X_7897589_SNP [dm3] X_8003556_SNP [dm6]	C	T	2.214e^-4	0.733	INTRON Tbh
2L	11442474	2L_11442474_SNP [dm3] 2L_11442474_SNP [dm6]	C	A	2.219e^-4	0.733	INTRON salm
3R	14957718	3R_14957718_DEL [dm3] 3R_19131996_DEL [dm6]	TCGCAT	T	2.222e^-4	0.733	UPSTREAM Cyp12a5 DOWNSTREAM CG6040 INTERGENIC
3R	10514035	3R_10514035_SNP [dm3] 3R_14688313_SNP [dm6]	T	G	2.222e^-4	0.733	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
2R	18763275	2R_18763275_SNP [dm3] 2R_22875752_SNP [dm6]	G	A	2.226e^-4	0.733	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
3L	12247075	3L_12247075_SNP [dm3] 3L_12253975_SNP [dm6]	C	T	2.231e^-4	0.733	INTRON app
3R	17525506	3R_17525506_SNP [dm3] 3R_21699784_SNP [dm6]	G	T	2.232e^-4	0.733	INTRON CG31176
3L	14774404	3L_14774404_SNP [dm3] 3L_14781304_SNP [dm6]	G	A	2.235e^-4	0.733	INTRON bmm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9367754	2R_9367754_SNP [dm3] 2R_13480249_SNP [dm6]	T	C	2.237e^-4	0.733	INTRON arr
3L	9801366	3L_9801366_SNP [dm3] 3L_9808266_SNP [dm6]	T	C	2.241e^-4	0.733	UTR_3_PRIME CG32052	TF binding site BDTNP1_TFBS_twi
2R	12444117	2R_12444117_SNP [dm3] 2R_16556612_SNP [dm6]	C	T	2.242e^-4	0.733	INTRON Syn2
3R	25818024	3R_25818024_SNP [dm3] 3R_29992302_SNP [dm6]	A	G	2.247e^-4	0.733	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	1755865	3R_1755865_SNP [dm3] 3R_5930143_SNP [dm6]	C	T	2.249e^-4	0.733	INTRON CG34113
X	21867037	X_21867037_SNP [dm3] X_22465201_SNP [dm6]	C	A	2.251e^-4	0.733	SYNONYMOUS_CODING CG14619 INTRON CG14619
3L	14499583	3L_14499583_SNP [dm3] 3L_14506483_SNP [dm6]	C	T	2.252e^-4	0.733	INTRON bbg
2R	18717318	2R_18717318_SNP [dm3] 2R_22829795_SNP [dm6]	T	C	2.252e^-4	0.733	DOWNSTREAM CG30274 & 1 other INTRON CG30272
3R	5000921	3R_5000921_SNP [dm3] 3R_9175199_SNP [dm6]	C	A	2.254e^-4	0.733	INTRON pum	TF binding site mE1_TFBS_bab1
2L	9825805	2L_9825805_SNP [dm3] 2L_9825805_SNP [dm6]	G	A	2.257e^-4	0.733	INTRON nAChRalpha6
2L	6304373	2L_6304373_SNP [dm3] 2L_6304373_SNP [dm6]	C	A	2.259e^-4	0.733	INTRON Ddr
3R	3383508	3R_3383508_SNP [dm3] 3R_7557786_SNP [dm6]	C	T	2.262e^-4	0.733	INTERGENIC
3L	741091	3L_741091_DEL [dm3] 3L_741091_DEL [dm6]	GCAAATCG	G	2.269e^-4	0.733	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	16277653	3L_16277653_INS [dm3] 3L_16284553_INS [dm6]	T	TGACCCG	2.272e^-4	0.733	UPSTREAM CG13048 DOWNSTREAM CG13047 INTERGENIC
3L	9697070	3L_9697070_SNP [dm3] 3L_9703970_SNP [dm6]	T	C	2.293e^-4	0.733	UPSTREAM CG16711 & 1 other INTERGENIC
3R	24938743	3R_24938743_SNP [dm3] 3R_29113021_SNP [dm6]	C	T	2.299e^-4	0.733	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9614032	3R_9614032_INS [dm3] 3R_13788310_INS [dm6]	T	TGAAGTTTATACAACACTTT...	2.301e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15007726	3R_15007726_SNP [dm3] 3R_19182004_SNP [dm6]	C	A	2.307e^-4	0.733	INTRON CG31475
3R	15457039	3R_15457039_SNP [dm3] 3R_19631317_SNP [dm6]	C	A	2.314e^-4	0.733	INTRON CG6231
3L	7307488	3L_7307488_SNP [dm3] 3L_7314388_SNP [dm6]	G	A	2.316e^-4	0.733	INTERGENIC
2L	16541441	2L_16541441_SNP [dm3] 2L_16541441_SNP [dm6]	C	T	2.325e^-4	0.733	INTERGENIC
3R	25903009	3R_25903009_SNP [dm3] 3R_30077287_SNP [dm6]	T	C	2.328e^-4	0.733	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3398061	2L_3398061_SNP [dm3] 2L_3398061_SNP [dm6]	A	T	2.329e^-4	0.733	START_GAINED CG34175 UTR_5_PRIME CG34175 UPSTREAM CR44792
2L	15412796	2L_15412796_SNP [dm3] 2L_15412796_SNP [dm6]	T	A	2.330e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13605264	3L_13605264_SNP [dm3] 3L_13612164_SNP [dm6]	G	A	2.331e^-4	0.733	INTRON bru-3
3L	10553626	3L_10553626_SNP [dm3] 3L_10560526_SNP [dm6]	G	T	2.332e^-4	0.733	INTRON A2bp1
3R	9590996	3R_9590996_DEL [dm3] 3R_13765274_DEL [dm6]	ATTATATGCGTA...	T	2.334e^-4	0.733	UPSTREAM CG9312 DOWNSTREAM CG34383 INTERGENIC
3R	14308363	3R_14308363_SNP [dm3] 3R_18482641_SNP [dm6]	G	A	2.341e^-4	0.733	INTRON fru
3L	7544296	3L_7544296_SNP [dm3] 3L_7551196_SNP [dm6]	T	A	2.354e^-4	0.733	INTERGENIC
2L	7769477	2L_7769477_DEL [dm3] 2L_7769477_DEL [dm6]	TTG	T	2.355e^-4	0.733	INTRON CG7191
2L	5126685	2L_5126685_SNP [dm3] 2L_5126685_SNP [dm6]	G	A	2.364e^-4	0.733	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13241097	X_13241097_SNP [dm3] X_13347064_SNP [dm6]	A	T	2.367e^-4	0.733	UPSTREAM CR45709 INTERGENIC
2L	16852014	2L_16852014_SNP [dm3] 2L_16852014_SNP [dm6]	A	T	2.368e^-4	0.733	INTRON CG31810
3R	14503318	3R_14503318_SNP [dm3] 3R_18677596_SNP [dm6]	G	C	2.376e^-4	0.733	UPSTREAM CG7706 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	7273025	2R_7273025_SNP [dm3] 2R_11385520_SNP [dm6]	C	A	2.377e^-4	0.733	INTRON sprt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14486426	3L_14486426_SNP [dm3] 3L_14493326_SNP [dm6]	C	G	2.378e^-4	0.733	INTRON bbg
3L	364957	3L_364957_SNP [dm3] 3L_364957_SNP [dm6]	G	T	2.378e^-4	0.733	DOWNSTREAM CG13884 INTRON CG1233
3R	16409286	3R_16409286_SNP [dm3] 3R_20583564_SNP [dm6]	G	C	2.382e^-4	0.733	NON_SYNONYMOUS_CODING CG16953
3L	7448331	3L_7448331_SNP [dm3] 3L_7455231_SNP [dm6]	C	G	2.383e^-4	0.733	UPSTREAM ppk26 DOWNSTREAM CG42458 INTERGENIC
3R	9674036	3R_9674036_SNP [dm3] 3R_13848314_SNP [dm6]	T	A	2.385e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
X	17654508	X_17654508_SNP [dm3] X_17760475_SNP [dm6]	G	T	2.397e^-4	0.733	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10603427	3L_10603427_SNP [dm3] 3L_10610327_SNP [dm6]	A	G	2.401e^-4	0.733	INTERGENIC
3L	7544208	3L_7544208_SNP [dm3] 3L_7551108_SNP [dm6]	T	C	2.402e^-4	0.733	INTERGENIC
3L	14069296	3L_14069296_SNP [dm3] 3L_14076196_SNP [dm6]	G	C	2.404e^-4	0.733	UPSTREAM btl DOWNSTREAM Pex1 INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20582999	X_20582999_SNP [dm3] X_20711972_SNP [dm6]	G	T	2.405e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs
3R	18383968	3R_18383968_DEL [dm3] 3R_22558246_DEL [dm6]	CAAA	C	2.409e^-4	0.733	DOWNSTREAM CG5278 INTERGENIC
3R	14396168	3R_14396168_MNP [dm3] 3R_18570446_MNP [dm6]	AAC	TTG	2.413e^-4	0.733	INTERGENIC
3R	11041898	3R_11041898_SNP [dm3] 3R_15216176_SNP [dm6]	T	A	2.415e^-4	0.733	SYNONYMOUS_CODING SIDL	TF binding site mE1_TFBS_cad
3L	13172918	3L_13172918_SNP [dm3] 3L_13179818_SNP [dm6]	G	A	2.417e^-4	0.733	INTERGENIC
2L	4271677	2L_4271677_SNP [dm3] 2L_4271677_SNP [dm6]	C	T	2.422e^-4	0.733	INTERGENIC
X	3472227	X_3472227_SNP [dm3] X_3578194_SNP [dm6]	C	A	2.424e^-4	0.733	INTRON AstA-R1
3R	6551989	3R_6551989_SNP [dm3] 3R_10726267_SNP [dm6]	T	C	2.427e^-4	0.733	INTERGENIC
3R	19775702	3R_19775702_SNP [dm3] 3R_23949980_SNP [dm6]	G	A	2.428e^-4	0.733	INTERGENIC
3L	7632980	3L_7632980_SNP [dm3] 3L_7639880_SNP [dm6]	C	A	2.445e^-4	0.733	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
3R	4963530	3R_4963530_SNP [dm3] 3R_9137808_SNP [dm6]	T	C	2.450e^-4	0.733	INTRON pum
2R	17786789	2R_17786789_SNP [dm3] 2R_21899284_SNP [dm6]	C	T	2.451e^-4	0.733	INTRON Fili
2L	16540839	2L_16540839_SNP [dm3] 2L_16540839_SNP [dm6]	C	A	2.452e^-4	0.733	INTERGENIC
3L	3719416	3L_3719416_DEL [dm3] 3L_3719416_DEL [dm6]	TTT	T	2.456e^-4	0.733	INTRON CG32264	TF binding site mE1_TFBS_cad
2R	14926496	2R_14926496_SNP [dm3] 2R_19038991_SNP [dm6]	G	A	2.456e^-4	0.733	INTERGENIC
3R	5000941	3R_5000941_MNP [dm3] 3R_9175219_MNP [dm6]	CTC	TCA	2.462e^-4	0.733	INTRON pum
3L	3779254	3L_3779254_SNP [dm3] 3L_3779254_SNP [dm6]	G	A	2.468e^-4	0.733	INTRON CG32264
2R	14222237	2R_14222237_SNP [dm3] 2R_18334732_SNP [dm6]	G	A	2.471e^-4	0.733	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14069213	3L_14069213_SNP [dm3] 3L_14076113_SNP [dm6]	C	T	2.473e^-4	0.733	UTR_3_PRIME Pex1 UPSTREAM btl INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13409941	3R_13409941_SNP [dm3] 3R_17584219_SNP [dm6]	A	G	2.473e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	9590855	3R_9590855_SNP [dm3] 3R_13765133_SNP [dm6]	A	T	2.476e^-4	0.733	UPSTREAM CG9312 DOWNSTREAM CG34383 INTERGENIC
3R	9590864	3R_9590864_SNP [dm3] 3R_13765142_SNP [dm6]	A	C	2.476e^-4	0.733	UPSTREAM CG9312 DOWNSTREAM CG34383 INTERGENIC
3R	14324515	3R_14324515_SNP [dm3] 3R_18498793_SNP [dm6]	A	G	2.476e^-4	0.733	INTRON fru
3L	9696969	3L_9696969_INS [dm3] 3L_9703869_INS [dm6]	A	ACAA	2.478e^-4	0.733	UPSTREAM CG16711 & 1 other INTERGENIC
3L	9669685	3L_9669685_DEL [dm3] 3L_9676585_DEL [dm6]	TT	T	2.479e^-4	0.733	INTRON fry	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7735809	3R_7735809_SNP [dm3] 3R_11910087_SNP [dm6]	A	G	2.482e^-4	0.733	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8343766	3R_8343766_SNP [dm3] 3R_12518044_SNP [dm6]	G	A	2.485e^-4	0.733	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	16737027	X_16737027_SNP [dm3] X_16842994_SNP [dm6]	C	T	2.488e^-4	0.733	INTRON RSG7	TF binding site mE1_TFBS_HSA
3L	5103192	3L_5103192_SNP [dm3] 3L_5103192_SNP [dm6]	A	G	2.488e^-4	0.733	INTERGENIC
2L	6640154	2L_6640154_SNP [dm3] 2L_6640154_SNP [dm6]	G	A	2.496e^-4	0.733	SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_cad
3R	22999928	3R_22999928_SNP [dm3] 3R_27174206_SNP [dm6]	C	T	2.497e^-4	0.733	SYNONYMOUS_CODING Ser	TF binding site mE1_TFBS_cad
2R	18023727	2R_18023727_INS [dm3] 2R_22136222_INS [dm6]	T	TATAT	2.497e^-4	0.733	UPSTREAM a INTERGENIC
3L	8061395	3L_8061395_DEL [dm3] 3L_8068295_DEL [dm6]	AAAAATC	A	2.512e^-4	0.733	UPSTREAM tRNA:CR32363 DOWNSTREAM CG42590 INTRON Ect4
3R	23481862	3R_23481862_SNP [dm3] 3R_27656140_SNP [dm6]	A	T	2.516e^-4	0.733	DOWNSTREAM Mlc1 INTRON tau
3L	12710988	3L_12710988_DEL [dm3] 3L_12717888_DEL [dm6]	AAA	G	2.518e^-4	0.733	INTERGENIC
3R	5424679	3R_5424679_SNP [dm3] 3R_9598957_SNP [dm6]	A	G	2.529e^-4	0.733	INTRON CG8312	TF binding site BDTNP1_TFBS_hb
3L	14069292	3L_14069292_SNP [dm3] 3L_14076192_SNP [dm6]	A	G	2.530e^-4	0.733	UPSTREAM btl DOWNSTREAM Pex1 INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9497562	3R_9497562_SNP [dm3] 3R_13671840_SNP [dm6]	A	G	2.533e^-4	0.733	INTRON Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14481131	2L_14481131_DEL [dm3] 2L_14481131_DEL [dm6]	CT	A	2.533e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9808254	2R_9808254_SNP [dm3] 2R_13920749_SNP [dm6]	C	A	2.534e^-4	0.733	INTRON shot
3R	14396171	3R_14396171_INS [dm3] 3R_18570449_INS [dm6]	T	TAT	2.541e^-4	0.733	INTERGENIC
2R	14507834	2R_14507834_SNP [dm3] 2R_18620329_SNP [dm6]	T	A	2.543e^-4	0.733	DOWNSTREAM Atg7 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	9696978	3L_9696978_SNP [dm3] 3L_9703878_SNP [dm6]	T	A	2.544e^-4	0.733	UPSTREAM CG16711 & 1 other INTERGENIC
3R	18173082	3R_18173082_SNP [dm3] 3R_22347360_SNP [dm6]	G	A	2.554e^-4	0.733	INTERGENIC
3R	15003341	3R_15003341_SNP [dm3] 3R_19177619_SNP [dm6]	A	G	2.555e^-4	0.733	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6006866	2L_6006866_SNP [dm3] 2L_6006866_SNP [dm6]	A	G	2.559e^-4	0.733	UPSTREAM Gal DOWNSTREAM CR43866 & 1 other INTERGENIC
3L	9322393	3L_9322393_SNP [dm3] 3L_9329293_SNP [dm6]	A	G	2.567e^-4	0.733	INTERGENIC
2R	13022082	2R_13022082_SNP [dm3] 2R_17134577_SNP [dm6]	C	T	2.568e^-4	0.733	NON_SYNONYMOUS_CODING CG11400 DOWNSTREAM Acp54A1
3L	6396442	3L_6396442_SNP [dm3] 3L_6403342_SNP [dm6]	T	C	2.568e^-4	0.733	INTRON CG42747
2L	2866553	2L_2866553_SNP [dm3] 2L_2866553_SNP [dm6]	A	G	2.573e^-4	0.733	SYNONYMOUS_CODING CG2991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16293867	3R_16293867_SNP [dm3] 3R_20468145_SNP [dm6]	C	T	2.574e^-4	0.733	INTRON Gfrl
2L	1099702	2L_1099702_SNP [dm3] 2L_1099702_SNP [dm6]	C	T	2.578e^-4	0.733	INTRON CG4629
3L	9697366	3L_9697366_SNP [dm3] 3L_9704266_SNP [dm6]	T	C	2.583e^-4	0.733	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5449908	2L_5449908_SNP [dm3] 2L_5449908_SNP [dm6]	A	G	2.592e^-4	0.733	INTERGENIC
3R	13019438	3R_13019438_SNP [dm3] 3R_17193716_SNP [dm6]	C	T	2.594e^-4	0.733	INTRON Mur89F
2L	12612746	2L_12612746_DEL [dm3] 2L_12612746_DEL [dm6]	CCT	C	2.601e^-4	0.733	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	14493160	2L_14493160_SNP [dm3] 2L_14493160_SNP [dm6]	A	G	2.608e^-4	0.733	SYNONYMOUS_STOP noc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	20582955	X_20582955_SNP [dm3] X_20711928_SNP [dm6]	T	A	2.609e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs
3R	9593702	3R_9593702_SNP [dm3] 3R_13767980_SNP [dm6]	T	A	2.609e^-4	0.733	DOWNSTREAM CG9312 INTRON Cht5
2R	12078105	2R_12078105_SNP [dm3] 2R_16190600_SNP [dm6]	T	C	2.610e^-4	0.733	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16054175	2L_16054175_SNP [dm3] 2L_16054175_SNP [dm6]	A	C	2.622e^-4	0.733	INTRON beat-Ia
2R	6808632	2R_6808632_SNP [dm3] 2R_10921127_SNP [dm6]	C	A	2.625e^-4	0.733	INTERGENIC
X	16083291	X_16083291_SNP [dm3] X_16189258_SNP [dm6]	T	G	2.626e^-4	0.733	INTERGENIC
2R	15812324	2R_15812324_SNP [dm3] 2R_19924819_SNP [dm6]	G	A	2.631e^-4	0.733	DOWNSTREAM CR44626 INTERGENIC
3R	23000258	3R_23000258_DEL [dm3] 3R_27174536_DEL [dm6]	AT	A	2.638e^-4	0.733	INTRON Ser	TF binding site mE1_TFBS_cad
2R	18672089	2R_18672089_SNP [dm3] 2R_22784584_SNP [dm6]	T	C	2.642e^-4	0.733	UTR_5_PRIME CG30270 INTRON CG42260
3L	18382462	3L_18382462_SNP [dm3] 3L_18389362_SNP [dm6]	A	T	2.644e^-4	0.733	INTERGENIC
2R	9152751	2R_9152751_INS [dm3] 2R_13265246_INS [dm6]	A	AA	2.651e^-4	0.733	DOWNSTREAM CG42319 INTRON CG42319
3R	24938687	3R_24938687_SNP [dm3] 3R_29112965_SNP [dm6]	G	A	2.651e^-4	0.733	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16553632	2L_16553632_INS [dm3] 2L_16553632_INS [dm6]	T	TACGCCCGCCCAACTTAT...	2.651e^-4	0.733	INTRON CG42389
3L	2098839	3L_2098839_SNP [dm3] 3L_2098839_SNP [dm6]	A	G	2.652e^-4	0.733	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
2R	17677925	2R_17677925_SNP [dm3] 2R_21790420_SNP [dm6]	C	A	2.653e^-4	0.733	SYNONYMOUS_CODING lox2
2L	14423131	2L_14423131_SNP [dm3] 2L_14423131_SNP [dm6]	A	G	2.653e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14396309	3R_14396309_SNP [dm3] 3R_18570587_SNP [dm6]	T	G	2.660e^-4	0.733	INTERGENIC
3R	5428329	3R_5428329_SNP [dm3] 3R_9602607_SNP [dm6]	G	A	2.661e^-4	0.733	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18510067	3R_18510067_SNP [dm3] 3R_22684345_SNP [dm6]	C	T	2.678e^-4	0.733	DOWNSTREAM CG45058 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	3232457	2L_3232457_SNP [dm3] 2L_3232457_SNP [dm6]	T	G	2.682e^-4	0.733	INTERGENIC
3R	10596576	3R_10596576_SNP [dm3] 3R_14770854_SNP [dm6]	A	T	2.689e^-4	0.733	INTRON jvl
3R	3352387	3R_3352387_SNP [dm3] 3R_7526665_SNP [dm6]	A	C	2.690e^-4	0.733	INTRON alpha-Est6 EXON alpha-Est4aPsi
3L	17386505	3L_17386505_SNP [dm3] 3L_17393405_SNP [dm6]	T	C	2.693e^-4	0.733	INTERGENIC
2L	15097317	2L_15097317_SNP [dm3] 2L_15097317_SNP [dm6]	C	T	2.693e^-4	0.733	DOWNSTREAM CG15270 INTERGENIC	TF binding site mE1_TFBS_inv
3R	14308369	3R_14308369_SNP [dm3] 3R_18482647_SNP [dm6]	A	G	2.696e^-4	0.733	INTRON fru
3R	16618705	3R_16618705_SNP [dm3] 3R_20792983_SNP [dm6]	T	A	2.697e^-4	0.733	INTRON Syp	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	24963031	3R_24963031_SNP [dm3] 3R_29137309_SNP [dm6]	A	C	2.701e^-4	0.733	DOWNSTREAM CG14512 INTRON Vha100-1
3L	9679398	3L_9679398_SNP [dm3] 3L_9686298_SNP [dm6]	C	A	2.710e^-4	0.733	DOWNSTREAM CG16719 INTRON CG6767
3L	6395564	3L_6395564_SNP [dm3] 3L_6402464_SNP [dm6]	G	A	2.712e^-4	0.733	INTRON CG42747
X	18936819	X_18936819_SNP [dm3] X_19042786_SNP [dm6]	A	C	2.712e^-4	0.733	INTERGENIC
3L	2606630	3L_2606630_SNP [dm3] 3L_2606630_SNP [dm6]	G	T	2.712e^-4	0.733	INTRON Pxn
2L	5700648	2L_5700648_SNP [dm3] 2L_5700648_SNP [dm6]	T	A	2.714e^-4	0.733	INTERGENIC
3R	10614742	3R_10614742_SNP [dm3] 3R_14789020_SNP [dm6]	A	T	2.716e^-4	0.733	SPLICE_SITE_REGION jvl INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10058691	3R_10058691_SNP [dm3] 3R_14232969_SNP [dm6]	T	G	2.726e^-4	0.733	INTERGENIC
X	7897601	X_7897601_SNP [dm3] X_8003568_SNP [dm6]	C	A	2.731e^-4	0.733	INTRON Tbh
3L	15077469	3L_15077469_SNP [dm3] 3L_15084369_SNP [dm6]	C	A	2.736e^-4	0.733	NON_SYNONYMOUS_CODING cp309 UTR_5_PRIME cp309	TF binding site mE1_TFBS_cad
3L	12472403	3L_12472403_SNP [dm3] 3L_12479303_SNP [dm6]	C	A	2.748e^-4	0.733	INTRON CG10663
3L	2093114	3L_2093114_SNP [dm3] 3L_2093114_SNP [dm6]	A	G	2.750e^-4	0.733	INTRON sls
2L	15752174	2L_15752174_SNP [dm3] 2L_15752174_SNP [dm6]	A	T	2.755e^-4	0.733	UPSTREAM l_2_35Df & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7903294	2R_7903294_SNP [dm3] 2R_12015789_SNP [dm6]	C	G	2.757e^-4	0.733	INTRON otk EXON CR44306	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
X	4879291	X_4879291_SNP [dm3] X_4985258_SNP [dm6]	T	G	2.757e^-4	0.733	INTRON CR44833	regulatory region REDfly_CRMs
2L	15075560	2L_15075560_DEL [dm3] 2L_15075560_DEL [dm6]	ATA	A	2.763e^-4	0.733	UTR_5_PRIME CG15270
3R	18174652	3R_18174652_SNP [dm3] 3R_22348930_SNP [dm6]	C	A	2.767e^-4	0.733	INTERGENIC
3L	1930643	3L_1930643_INS [dm3] 3L_1930643_INS [dm6]	A	ACATA	2.771e^-4	0.733	INTRON Dbx
3R	21079329	3R_21079329_SNP [dm3] 3R_25253607_SNP [dm6]	C	G	2.779e^-4	0.733	NON_SYNONYMOUS_CODING Nup358
3L	3719405	3L_3719405_SNP [dm3] 3L_3719405_SNP [dm6]	G	A	2.779e^-4	0.733	INTRON CG32264	TF binding site mE1_TFBS_cad
2L	6007283	2L_6007283_SNP [dm3] 2L_6007283_SNP [dm6]	A	G	2.785e^-4	0.733	UPSTREAM Gal DOWNSTREAM CR43866 & 1 other INTERGENIC
3R	5427933	3R_5427933_SNP [dm3] 3R_9602211_SNP [dm6]	G	C	2.791e^-4	0.733	INTRON CG8312	TF binding site BDTNP1_TFBS_twi
2R	2464124	2R_2464124_DEL [dm3] 2R_6576619_DEL [dm6]	TTTTTGTAG	T	2.793e^-4	0.733	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6684624	2R_6684624_SNP [dm3] 2R_10797119_SNP [dm6]	G	A	2.794e^-4	0.733	INTRON CG33144
2L	16726544	2L_16726544_SNP [dm3] 2L_16726544_SNP [dm6]	A	T	2.794e^-4	0.733	INTRON VhaSFD
3L	13013942	3L_13013942_DEL [dm3] 3L_13020842_DEL [dm6]	AT	A	2.797e^-4	0.733	INTRON AdenoK
2L	5908605	2L_5908605_SNP [dm3] 2L_5908605_SNP [dm6]	G	A	2.800e^-4	0.733	SYNONYMOUS_CODING bchs DOWNSTREAM CG14000	TF binding site BDTNP1_TFBS_dl
2L	4145706	2L_4145706_SNP [dm3] 2L_4145706_SNP [dm6]	C	T	2.801e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	18384025	3R_18384025_SNP [dm3] 3R_22558303_SNP [dm6]	G	T	2.811e^-4	0.733	DOWNSTREAM CG5278 INTERGENIC
3L	19961534	3L_19961534_SNP [dm3] 3L_19968434_SNP [dm6]	T	A	2.814e^-4	0.733	INTRON Ac76E
3R	5001032	3R_5001032_SNP [dm3] 3R_9175310_SNP [dm6]	A	T	2.817e^-4	0.733	INTRON pum
X	11776238	X_11776238_SNP [dm3] X_11882205_SNP [dm6]	T	C	2.825e^-4	0.733	INTRON CG10353
3L	1780850	3L_1780850_SNP [dm3] 3L_1780850_SNP [dm6]	A	T	2.826e^-4	0.733	INTRON alpha-Spec
3R	2781599	3R_2781599_SNP [dm3] 3R_6955877_SNP [dm6]	T	G	2.835e^-4	0.733	INTRON Antp
X	18670588	X_18670588_SNP [dm3] X_18776555_SNP [dm6]	G	A	2.840e^-4	0.733	UTR_5_PRIME CG6891 INTRON CG6891	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12882285	3L_12882285_SNP [dm3] 3L_12889185_SNP [dm6]	G	T	2.840e^-4	0.733	UTR_3_PRIME CG14120 UPSTREAM CG43894 DOWNSTREAM CR45748
3R	25899723	3R_25899723_DEL [dm3] 3R_30074001_DEL [dm6]	AGTATATTTTCACTTTTA...	A	2.846e^-4	0.733	INTRON sima
2R	13449705	2R_13449705_SNP [dm3] 2R_17562200_SNP [dm6]	C	T	2.849e^-4	0.733	SYNONYMOUS_CODING Klp54D	TF binding site mE1_TFBS_HSA
2R	11646290	2R_11646290_DEL [dm3] 2R_15758785_DEL [dm6]	GGAG	G	2.853e^-4	0.733	INTRON CG30089	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	5449862	2L_5449862_SNP [dm3] 2L_5449862_SNP [dm6]	T	C	2.853e^-4	0.733	INTERGENIC
3R	15445368	3R_15445368_SNP [dm3] 3R_19619646_SNP [dm6]	A	T	2.855e^-4	0.733	INTRON CG6231
3R	5413246	3R_5413246_SNP [dm3] 3R_9587524_SNP [dm6]	C	G	2.856e^-4	0.733	SPLICE_SITE_REGION P58IPK SYNONYMOUS_CODING P58IPK DOWNSTREAM CG8301	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16646455	3L_16646455_SNP [dm3] 3L_16653355_SNP [dm6]	T	C	2.859e^-4	0.733	UPSTREAM snRNA:U12:73B INTRON Baldspot
3R	24130741	3R_24130741_SNP [dm3] 3R_28305019_SNP [dm6]	G	A	2.869e^-4	0.733	UPSTREAM CG12516 INTERGENIC
3R	3860843	3R_3860843_SNP [dm3] 3R_8035121_SNP [dm6]	C	T	2.871e^-4	0.733	SYNONYMOUS_CODING unc-45	TF binding site mE1_TFBS_sens
3R	7783147	3R_7783147_SNP [dm3] 3R_11957425_SNP [dm6]	C	T	2.877e^-4	0.733	UPSTREAM Hsp70Aa INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	8480617	2R_8480617_SNP [dm3] 2R_12593112_SNP [dm6]	T	G	2.883e^-4	0.733	UPSTREAM Amph & 1 other DOWNSTREAM CR45279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6989668	2L_6989668_SNP [dm3] 2L_6989668_SNP [dm6]	A	G	2.884e^-4	0.733	INTRON uif
2L	924096	2L_924096_SNP [dm3] 2L_924096_SNP [dm6]	T	C	2.888e^-4	0.733	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3L	14069286	3L_14069286_SNP [dm3] 3L_14076186_SNP [dm6]	G	C	2.892e^-4	0.733	UPSTREAM btl DOWNSTREAM Pex1 INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	413956	3L_413956_MNP [dm3] 3L_413956_MNP [dm6]	TGT	CTG	2.896e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	3351158	3R_3351158_SNP [dm3] 3R_7525436_SNP [dm6]	C	G	2.899e^-4	0.733	NON_SYNONYMOUS_CODING alpha-Est6 UPSTREAM alpha-Est4aPsi	TF binding site mE1_TFBS_cad
3R	3324103	3R_3324103_DEL [dm3] 3R_7498381_DEL [dm6]	TT	T	2.902e^-4	0.733	INTRON alpha-Est9
3R	7728056	3R_7728056_DEL [dm3] 3R_11902334_DEL [dm6]	TT	T	2.902e^-4	0.733	INTRON Cad87A
3R	18383853	3R_18383853_SNP [dm3] 3R_22558131_SNP [dm6]	A	G	2.902e^-4	0.733	DOWNSTREAM CG5278 INTERGENIC
3L	7055210	3L_7055210_SNP [dm3] 3L_7062110_SNP [dm6]	C	A	2.914e^-4	0.733	INTRON CG8641
2L	3960937	2L_3960937_SNP [dm3] 2L_3960937_SNP [dm6]	T	A	2.925e^-4	0.733	INTRON fred
X	11179812	X_11179812_SNP [dm3] X_11285779_SNP [dm6]	T	C	2.925e^-4	0.733	INTRON CG44422
3R	4211102	3R_4211102_SNP [dm3] 3R_8385380_SNP [dm6]	T	C	2.928e^-4	0.733	SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad
2R	18941870	2R_18941870_SNP [dm3] 2R_23054347_SNP [dm6]	T	C	2.928e^-4	0.733	INTERGENIC
3R	24963041	3R_24963041_SNP [dm3] 3R_29137319_SNP [dm6]	T	C	2.929e^-4	0.733	DOWNSTREAM CG14512 INTRON Vha100-1
3R	20569656	3R_20569656_DEL [dm3] 3R_24743934_DEL [dm6]	TT	T	2.931e^-4	0.733	INTRON tok	TF binding site mE1_TFBS_cad
3L	6396124	3L_6396124_SNP [dm3] 3L_6403024_SNP [dm6]	A	G	2.931e^-4	0.733	INTRON CG42747
2R	2477950	2R_2477950_SNP [dm3] 2R_6590445_SNP [dm6]	C	A	2.942e^-4	0.733	INTRON jing	TF binding site mE1_TFBS_HSA
3L	9669708	3L_9669708_SNP [dm3] 3L_9676608_SNP [dm6]	G	A	2.945e^-4	0.733	INTRON fry	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18515383	X_18515383_SNP [dm3] X_18621350_SNP [dm6]	A	G	2.950e^-4	0.733	UPSTREAM CR43289 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	18515430	X_18515430_SNP [dm3] X_18621397_SNP [dm6]	G	A	2.950e^-4	0.733	UPSTREAM CR43289 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12887727	3L_12887727_SNP [dm3] 3L_12894627_SNP [dm6]	C	T	2.951e^-4	0.733	UTR_3_PRIME CG14118	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	7132451	2L_7132451_SNP [dm3] 2L_7132451_SNP [dm6]	T	C	2.955e^-4	0.733	INTRON Pvf3
2R	2570472	2R_2570472_SNP [dm3] 2R_6682967_SNP [dm6]	T	A	2.959e^-4	0.733	UPSTREAM CG15909 DOWNSTREAM CR44164 INTRON CG9422 EXON CR44165
2L	4153635	2L_4153635_SNP [dm3] 2L_4153635_SNP [dm6]	C	G	2.960e^-4	0.733	INTERGENIC
3L	755815	3L_755815_DEL [dm3] 3L_755815_DEL [dm6]	AA	A	2.967e^-4	0.733	UPSTREAM hng3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15743830	2L_15743830_SNP [dm3] 2L_15743830_SNP [dm6]	G	A	2.975e^-4	0.733	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	14069205	3L_14069205_SNP [dm3] 3L_14076105_SNP [dm6]	G	A	2.976e^-4	0.733	UTR_3_PRIME Pex1 UPSTREAM btl INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2570539	2R_2570539_SNP [dm3] 2R_6683034_SNP [dm6]	T	C	2.976e^-4	0.733	UPSTREAM CG15909 DOWNSTREAM CR44164 INTRON CG9422 EXON CR44165
3R	13148379	3R_13148379_SNP [dm3] 3R_17322657_SNP [dm6]	A	G	2.987e^-4	0.733	INTRON beat-IIa
3L	3663939	3L_3663939_SNP [dm3] 3L_3663939_SNP [dm6]	T	C	2.990e^-4	0.733	INTERGENIC
2L	15068867	2L_15068867_SNP [dm3] 2L_15068867_SNP [dm6]	G	A	2.995e^-4	0.733	NON_SYNONYMOUS_CODING vas UPSTREAM vig INTRON vig	TF binding site BDTNP1_TFBS_dl
3L	14327309	3L_14327309_SNP [dm3] 3L_14334209_SNP [dm6]	G	A	2.998e^-4	0.733	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6989665	2L_6989665_SNP [dm3] 2L_6989665_SNP [dm6]	A	T	3.000e^-4	0.733	INTRON uif
3L	9512810	3L_9512810_SNP [dm3] 3L_9519710_SNP [dm6]	T	C	3.000e^-4	0.733	INTRON CG33700
3L	9696939	3L_9696939_SNP [dm3] 3L_9703839_SNP [dm6]	A	T	3.006e^-4	0.733	UPSTREAM CG16711 & 1 other INTERGENIC
3L	9410622	3L_9410622_SNP [dm3] 3L_9417522_SNP [dm6]	G	A	3.011e^-4	0.733	UPSTREAM CG3982 INTRON CG3967
3R	23481855	3R_23481855_SNP [dm3] 3R_27656133_SNP [dm6]	A	C	3.021e^-4	0.733	DOWNSTREAM Mlc1 INTRON tau
2L	16844421	2L_16844421_SNP [dm3] 2L_16844421_SNP [dm6]	C	A	3.023e^-4	0.733	INTRON CG13284
2R	2453220	2R_2453220_SNP [dm3] 2R_6565715_SNP [dm6]	T	C	3.029e^-4	0.733	INTRON jing
3L	7419445	3L_7419445_SNP [dm3] 3L_7426345_SNP [dm6]	T	A	3.030e^-4	0.733	INTRON CG42458
X	3472186	X_3472186_SNP [dm3] X_3578153_SNP [dm6]	T	C	3.036e^-4	0.733	INTRON AstA-R1
2R	8463699	2R_8463699_SNP [dm3] 2R_12576194_SNP [dm6]	A	G	3.036e^-4	0.733	SYNONYMOUS_CODING Sin3A UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
3R	14380814	3R_14380814_SNP [dm3] 3R_18555092_SNP [dm6]	T	A	3.037e^-4	0.733	INTERGENIC
2R	19666643	2R_19666643_SNP [dm3] 2R_23779120_SNP [dm6]	C	A	3.039e^-4	0.733	INTRON CG9850
2L	7502701	2L_7502701_SNP [dm3] 2L_7502701_SNP [dm6]	G	A	3.043e^-4	0.733	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8333464	2R_8333464_SNP [dm3] 2R_12445959_SNP [dm6]	A	G	3.047e^-4	0.733	INTRON Dyb
X	5029934	X_5029934_SNP [dm3] X_5135901_SNP [dm6]	G	T	3.054e^-4	0.733	INTRON rg & 1 other
3R	24911317	3R_24911317_SNP [dm3] 3R_29085595_SNP [dm6]	C	G	3.056e^-4	0.733	INTRON CG11873
3R	10322157	3R_10322157_SNP [dm3] 3R_14496435_SNP [dm6]	T	C	3.065e^-4	0.733	EXON CR44177
3R	1795589	3R_1795589_SNP [dm3] 3R_5969867_SNP [dm6]	G	A	3.066e^-4	0.733	UPSTREAM CR44926 INTERGENIC
3R	18383972	3R_18383972_DEL [dm3] 3R_22558250_DEL [dm6]	TATACGATACATAAAAACA...	T	3.073e^-4	0.733	DOWNSTREAM CG5278 INTERGENIC
3L	3054178	3L_3054178_SNP [dm3] 3L_3054178_SNP [dm6]	C	T	3.073e^-4	0.733	SYNONYMOUS_CODING CG1271 UPSTREAM CG16753	TF binding site mE1_TFBS_sens
2L	16260408	2L_16260408_SNP [dm3] 2L_16260408_SNP [dm6]	G	A	3.096e^-4	0.733	SYNONYMOUS_CODING twe DOWNSTREAM EndoGI	TF binding site mE1_TFBS_cad
3R	9652454	3R_9652454_SNP [dm3] 3R_13826732_SNP [dm6]	T	C	3.105e^-4	0.733	DOWNSTREAM Mst87F INTERGENIC
2R	15134904	2R_15134904_DEL [dm3] 2R_19247399_DEL [dm6]	AA	A	3.106e^-4	0.733	INTERGENIC
3R	16522258	3R_16522258_SNP [dm3] 3R_20696536_SNP [dm6]	T	A	3.107e^-4	0.733	INTRON Oamb
2R	19345973	2R_19345973_SNP [dm3] 2R_23458450_SNP [dm6]	G	A	3.112e^-4	0.733	SYNONYMOUS_CODING skpF INTRON CG43795	TF binding site mE1_TFBS_chinmo
3R	23544971	3R_23544971_SNP [dm3] 3R_27719249_SNP [dm6]	C	T	3.116e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18462375	3R_18462375_SNP [dm3] 3R_22636653_SNP [dm6]	C	T	3.118e^-4	0.733	UPSTREAM loco INTRON loco	TF binding site mE1_TFBS_cad
3R	7770341	3R_7770341_SNP [dm3] 3R_11944619_SNP [dm6]	C	G	3.123e^-4	0.733	INTRON Cad87A
3R	3358444	3R_3358444_SNP [dm3] 3R_7532722_SNP [dm6]	A	G	3.127e^-4	0.733	UTR_3_PRIME alphaTub84D DOWNSTREAM alpha-Est5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8373298	2L_8373298_SNP [dm3] 2L_8373298_SNP [dm6]	A	G	3.127e^-4	0.733	INTRON CG17292	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2L	10356234	2L_10356234_SNP [dm3] 2L_10356234_SNP [dm6]	A	T	3.130e^-4	0.733	NON_SYNONYMOUS_CODING CG5367 UPSTREAM CG5045	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25824060	3R_25824060_SNP [dm3] 3R_29998338_SNP [dm6]	G	A	3.132e^-4	0.733	UTR_5_PRIME CG11504 UPSTREAM CG15525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16366512	2L_16366512_SNP [dm3] 2L_16366512_SNP [dm6]	A	G	3.134e^-4	0.733	SYNONYMOUS_CODING jhamt
3R	7770487	3R_7770487_SNP [dm3] 3R_11944765_SNP [dm6]	A	G	3.135e^-4	0.733	INTRON Cad87A
2R	17787100	2R_17787100_SNP [dm3] 2R_21899595_SNP [dm6]	A	G	3.135e^-4	0.733	INTRON Fili
3L	9697243	3L_9697243_SNP [dm3] 3L_9704143_SNP [dm6]	C	A	3.149e^-4	0.733	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22771855	3R_22771855_SNP [dm3] 3R_26946133_SNP [dm6]	T	C	3.149e^-4	0.733	SYNONYMOUS_CODING CG14252 DOWNSTREAM sda	TF binding site mE1_TFBS_HSA
2R	17787510	2R_17787510_SNP [dm3] 2R_21900005_SNP [dm6]	A	T	3.158e^-4	0.733	INTRON Fili	TF binding site BDTNP1_TFBS_dl
2L	14260983	2L_14260983_SNP [dm3] 2L_14260983_SNP [dm6]	A	T	3.163e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	13193852	3R_13193852_SNP [dm3] 3R_17368130_SNP [dm6]	T	C	3.163e^-4	0.733	INTERGENIC
3R	3351927	3R_3351927_SNP [dm3] 3R_7526205_SNP [dm6]	C	G	3.165e^-4	0.733	UPSTREAM alpha-Est4aPsi INTRON alpha-Est6
2L	4149272	2L_4149272_SNP [dm3] 2L_4149272_SNP [dm6]	G	A	3.166e^-4	0.733	UPSTREAM CG2955 INTERGENIC
3R	8358365	3R_8358365_SNP [dm3] 3R_12532643_SNP [dm6]	G	C	3.167e^-4	0.733	INTRON Octbeta3R
3R	24834056	3R_24834056_SNP [dm3] 3R_29008334_SNP [dm6]	C	A	3.171e^-4	0.733	DOWNSTREAM mir-4947 INTRON wat
3R	9590828	3R_9590828_SNP [dm3] 3R_13765106_SNP [dm6]	A	T	3.177e^-4	0.733	UPSTREAM CG9312 DOWNSTREAM CG34383 INTERGENIC
3R	9624471	3R_9624471_SNP [dm3] 3R_13798749_SNP [dm6]	T	C	3.180e^-4	0.733	UPSTREAM tRNA:CR31331 DOWNSTREAM tRNA:CR31588 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5924685	2L_5924685_SNP [dm3] 2L_5924685_SNP [dm6]	T	G	3.187e^-4	0.733	DOWNSTREAM CR43926 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9701065	3L_9701065_SNP [dm3] 3L_9707965_SNP [dm6]	G	A	3.195e^-4	0.733	SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5974192	X_5974192_SNP [dm3] X_6080159_SNP [dm6]	T	A	3.201e^-4	0.733	INTRON CG4660	TF binding site BDTNP1_TFBS_dl
2L	16541496	2L_16541496_SNP [dm3] 2L_16541496_SNP [dm6]	A	G	3.219e^-4	0.733	INTERGENIC
3L	2500518	3L_2500518_SNP [dm3] 3L_2500518_SNP [dm6]	T	A	3.221e^-4	0.733	INTRON CG16758	TF binding site mE1_TFBS_chinmo
3R	17551364	3R_17551364_SNP [dm3] 3R_21725642_SNP [dm6]	C	G	3.227e^-4	0.733	INTERGENIC
3R	25848192	3R_25848192_SNP [dm3] 3R_30022470_SNP [dm6]	T	A	3.230e^-4	0.733	SYNONYMOUS_CODING RpS28a UPSTREAM Axn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	11979374	3R_11979374_SNP [dm3] 3R_16153652_SNP [dm6]	C	T	3.231e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	2481625	2R_2481625_SNP [dm3] 2R_6594120_SNP [dm6]	G	T	3.233e^-4	0.733	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	12004765	2R_12004765_SNP [dm3] 2R_16117260_SNP [dm6]	C	G	3.235e^-4	0.733	SYNONYMOUS_CODING Jhedup DOWNSTREAM Asph
3R	9674047	3R_9674047_SNP [dm3] 3R_13848325_SNP [dm6]	A	G	3.239e^-4	0.733	INTERGENIC
3R	3394854	3R_3394854_SNP [dm3] 3R_7569132_SNP [dm6]	C	A	3.251e^-4	0.733	INTERGENIC
2L	5143975	2L_5143975_SNP [dm3] 2L_5143975_SNP [dm6]	G	A	3.255e^-4	0.733	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA
2R	2475256	2R_2475256_SNP [dm3] 2R_6587751_SNP [dm6]	C	A	3.258e^-4	0.733	INTRON jing
3L	2278086	3L_2278086_SNP [dm3] 3L_2278086_SNP [dm6]	T	G	3.261e^-4	0.733	DOWNSTREAM yellow-g2 INTERGENIC
3L	6585791	3L_6585791_SNP [dm3] 3L_6592691_SNP [dm6]	G	T	3.262e^-4	0.733	UTR_3_PRIME CG18769 DOWNSTREAM CG18769
3R	8112758	3R_8112758_SNP [dm3] 3R_12287036_SNP [dm6]	G	A	3.263e^-4	0.733	INTRON svp	TF binding site BDTNP1_TFBS_twi
3L	7600666	3L_7600666_SNP [dm3] 3L_7607566_SNP [dm6]	G	A	3.267e^-4	0.733	INTRON CG33275	TF binding site BDTNP1_TFBS_twi
3R	9614058	3R_9614058_SNP [dm3] 3R_13788336_SNP [dm6]	A	T	3.268e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9590577	3R_9590577_SNP [dm3] 3R_13764855_SNP [dm6]	C	T	3.268e^-4	0.733	UPSTREAM CG9312 DOWNSTREAM CG34383 INTERGENIC
2L	16541516	2L_16541516_SNP [dm3] 2L_16541516_SNP [dm6]	T	A	3.269e^-4	0.733	INTERGENIC
2R	7128250	2R_7128250_SNP [dm3] 2R_11240745_SNP [dm6]	C	G	3.270e^-4	0.733	UPSTREAM CG13215 DOWNSTREAM Listericin INTERGENIC
2R	18774560	2R_18774560_SNP [dm3] 2R_22887037_SNP [dm6]	T	C	3.270e^-4	0.733	SYNONYMOUS_CODING asrij UPSTREAM CG3499 DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	3.271e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15142226	2R_15142226_SNP [dm3] 2R_19254721_SNP [dm6]	A	T	3.273e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16390572	2R_16390572_SNP [dm3] 2R_20503067_SNP [dm6]	A	T	3.276e^-4	0.733	UPSTREAM Obp57c INTERGENIC	regulatory region REDfly_CRMs
3R	10074111	3R_10074111_SNP [dm3] 3R_14248389_SNP [dm6]	C	G	3.288e^-4	0.733	INTERGENIC
3R	5428971	3R_5428971_INS [dm3] 3R_9603249_INS [dm6]	T	TT	3.290e^-4	0.733	INTRON CG8312	TF binding site BDTNP1_TFBS_dl
3L	13090166	3L_13090166_SNP [dm3] 3L_13097066_SNP [dm6]	T	A	3.290e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	625969	2R_625969_SNP [dm3] 2R_4738464_SNP [dm6]	C	T	3.299e^-4	0.733	INTERGENIC
3R	14335202	3R_14335202_SNP [dm3] 3R_18509480_SNP [dm6]	T	A	3.301e^-4	0.733	INTRON fru
X	13069277	X_13069277_SNP [dm3] X_13175244_SNP [dm6]	A	T	3.302e^-4	0.733	INTRON CG34411	TF binding site BDTNP1_TFBS_twi
3R	9656846	3R_9656846_SNP [dm3] 3R_13831124_SNP [dm6]	C	A	3.305e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	3351354	3R_3351354_SNP [dm3] 3R_7525632_SNP [dm6]	C	T	3.307e^-4	0.733	NON_SYNONYMOUS_CODING alpha-Est6 UPSTREAM alpha-Est4aPsi
2L	14999845	2L_14999845_INS [dm3] 2L_14999845_INS [dm6]	A	AG	3.314e^-4	0.733	INTERGENIC
3L	14582960	3L_14582960_SNP [dm3] 3L_14589860_SNP [dm6]	T	A	3.318e^-4	0.733	INTRON HGTX
2R	8419897	2R_8419897_SNP [dm3] 2R_12532392_SNP [dm6]	G	T	3.319e^-4	0.733	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22900602	3R_22900602_SNP [dm3] 3R_27074880_SNP [dm6]	A	C	3.321e^-4	0.733	UPSTREAM CG14257 INTERGENIC
X	20018998	X_20018998_DEL [dm3] X_20124965_DEL [dm6]	AC	A	3.322e^-4	0.733	FRAME_SHIFT CG34331
3L	3951230	3L_3951230_SNP [dm3] 3L_3951230_SNP [dm6]	A	G	3.328e^-4	0.733	UTR_3_PRIME CG14984
3L	12912092	3L_12912092_SNP [dm3] 3L_12918992_SNP [dm6]	A	C	3.330e^-4	0.733	INTERGENIC
2R	14362981	2R_14362981_SNP [dm3] 2R_18475476_SNP [dm6]	A	G	3.331e^-4	0.733	INTRON CG30116
2R	3930398	2R_3930398_SNP [dm3] 2R_8042893_SNP [dm6]	A	G	3.334e^-4	0.733	DOWNSTREAM Optix INTERGENIC	TF binding site mE1_TFBS_cnc
3R	10586221	3R_10586221_SNP [dm3] 3R_14760499_SNP [dm6]	C	A	3.335e^-4	0.733	INTRON jvl
X	15538872	X_15538872_SNP [dm3] X_15644839_SNP [dm6]	G	C	3.337e^-4	0.733	UTR_3_PRIME CG8117	TF binding site BDTNP1_TFBS_da
X	16083292	X_16083292_SNP [dm3] X_16189259_SNP [dm6]	G	A	3.338e^-4	0.733	INTERGENIC
3R	24908845	3R_24908845_SNP [dm3] 3R_29083123_SNP [dm6]	G	A	3.340e^-4	0.733	INTRON CG11873
3L	2063230	3L_2063230_SNP [dm3] 3L_2063230_SNP [dm6]	A	T	3.340e^-4	0.733	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5236968	2R_5236968_SNP [dm3] 2R_9349463_SNP [dm6]	C	T	3.341e^-4	0.733	DOWNSTREAM Or45a INTRON CG13954 & 1 other
3L	4982564	3L_4982564_SNP [dm3] 3L_4982564_SNP [dm6]	T	C	3.347e^-4	0.733	DOWNSTREAM CR45685 INTRON Con	TF binding site mE1_TFBS_HSA
3R	24963949	3R_24963949_SNP [dm3] 3R_29138227_SNP [dm6]	T	C	3.348e^-4	0.733	SYNONYMOUS_CODING CG14512 UPSTREAM CG14516 DOWNSTREAM Vha100-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2129466	3L_2129466_SNP [dm3] 3L_2129466_SNP [dm6]	G	A	3.350e^-4	0.733	INTRON zormin
2R	2481615	2R_2481615_SNP [dm3] 2R_6594110_SNP [dm6]	C	T	3.351e^-4	0.733	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	5971526	X_5971526_SNP [dm3] X_6077493_SNP [dm6]	G	T	3.352e^-4	0.733	UTR_5_PRIME CG4666
X	3472220	X_3472220_SNP [dm3] X_3578187_SNP [dm6]	G	A	3.354e^-4	0.733	INTRON AstA-R1
2R	14221781	2R_14221781_SNP [dm3] 2R_18334276_SNP [dm6]	C	T	3.363e^-4	0.733	INTRON sbb
3L	1828364	3L_1828364_SNP [dm3] 3L_1828364_SNP [dm6]	A	G	3.363e^-4	0.733	INTRON Cpr62Ba
3R	3879065	3R_3879065_SNP [dm3] 3R_8053343_SNP [dm6]	A	G	3.364e^-4	0.733	INTRON CG43060
X	17378229	X_17378229_SNP [dm3] X_17484196_SNP [dm6]	C	T	3.366e^-4	0.733	INTRON CG43658	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15594898	3L_15594898_SNP [dm3] 3L_15601798_SNP [dm6]	T	A	3.367e^-4	0.733	SYNONYMOUS_CODING RhoGAP71E INTRON RhoGAP71E	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9515744	3L_9515744_SNP [dm3] 3L_9522644_SNP [dm6]	A	T	3.369e^-4	0.733	INTRON CG33700
2R	608678	2R_608678_SNP [dm3] 2R_4721173_SNP [dm6]	C	T	3.369e^-4	0.733	INTRON Nipped-B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	2464170	2R_2464170_INS [dm3] 2R_6576665_INS [dm6]	T	TA	3.376e^-4	0.733	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15626921	3R_15626921_SNP [dm3] 3R_19801199_SNP [dm6]	C	T	3.377e^-4	0.733	INTRON bnl	TF binding site mE1_TFBS_inv
3R	4701017	3R_4701017_SNP [dm3] 3R_8875295_SNP [dm6]	C	G	3.381e^-4	0.733	INTRON pyd
3R	23318856	3R_23318856_SNP [dm3] 3R_27493134_SNP [dm6]	C	G	3.381e^-4	0.733	INTERGENIC
3R	23011239	3R_23011239_SNP [dm3] 3R_27185517_SNP [dm6]	C	G	3.389e^-4	0.733	INTRON Ser	TF binding site mE1_TFBS_HSA
3R	20638161	3R_20638161_SNP [dm3] 3R_24812439_SNP [dm6]	A	G	3.389e^-4	0.733	INTRON CG5807	TF binding site mE1_TFBS_zfh1
2R	10867616	2R_10867616_SNP [dm3] 2R_14980111_SNP [dm6]	C	A	3.395e^-4	0.733	UTR_3_PRIME ckn
2R	611197	2R_611197_SNP [dm3] 2R_4723692_SNP [dm6]	T	C	3.397e^-4	0.733	INTRON Nipped-B	transposable element FlyBase
3R	10778414	3R_10778414_SNP [dm3] 3R_14952692_SNP [dm6]	A	T	3.408e^-4	0.733	INTERGENIC
X	4573729	X_4573729_SNP [dm3] X_4679696_SNP [dm6]	T	C	3.410e^-4	0.733	UPSTREAM rap DOWNSTREAM Pp2C1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	1537856	3R_1537856_DEL [dm3] 3R_5712134_DEL [dm6]	TCGATGTGCGCACAAAATGT...	T	3.415e^-4	0.733	UTR_3_PRIME plx DOWNSTREAM cas	TF binding site mE1_TFBS_cad
2L	16205315	2L_16205315_SNP [dm3] 2L_16205315_SNP [dm6]	T	C	3.417e^-4	0.733	INTERGENIC
2L	5144002	2L_5144002_SNP [dm3] 2L_5144002_SNP [dm6]	G	C	3.418e^-4	0.733	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2R	14424916	2R_14424916_SNP [dm3] 2R_18537411_SNP [dm6]	C	T	3.424e^-4	0.733	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19895031	3R_19895031_SNP [dm3] 3R_24069309_SNP [dm6]	C	T	3.427e^-4	0.733	INTRON 4EHP
X	11776158	X_11776158_SNP [dm3] X_11882125_SNP [dm6]	C	A	3.433e^-4	0.733	INTRON CG10353
2R	18666383	2R_18666383_SNP [dm3] 2R_22778878_SNP [dm6]	C	T	3.436e^-4	0.733	INTRON CG42260
X	17636828	X_17636828_SNP [dm3] X_17742795_SNP [dm6]	G	C	3.457e^-4	0.733	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	3085152	2L_3085152_SNP [dm3] 2L_3085152_SNP [dm6]	C	T	3.457e^-4	0.733	INTRON toc
X	19932654	X_19932654_SNP [dm3] X_20038621_SNP [dm6]	A	T	3.458e^-4	0.733	INTRON Dop2R
3R	22130558	3R_22130558_SNP [dm3] 3R_26304836_SNP [dm6]	T	G	3.462e^-4	0.733	INTERGENIC
X	3798796	X_3798796_SNP [dm3] X_3904763_SNP [dm6]	C	T	3.465e^-4	0.733	INTRON CG42541
3R	24434290	3R_24434290_SNP [dm3] 3R_28608568_SNP [dm6]	T	G	3.466e^-4	0.733	UTR_3_PRIME CG10011 DOWNSTREAM CG9986
3L	19969489	3L_19969489_DEL [dm3] 3L_19976389_DEL [dm6]	TTT	T	3.470e^-4	0.733	INTRON Ac76E
2L	3250711	2L_3250711_SNP [dm3] 2L_3250711_SNP [dm6]	G	T	3.471e^-4	0.733	INTERGENIC
2L	16541431	2L_16541431_SNP [dm3] 2L_16541431_SNP [dm6]	G	T	3.474e^-4	0.733	INTERGENIC
2R	16792063	2R_16792063_SNP [dm3] 2R_20904558_SNP [dm6]	G	T	3.480e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8068653	2L_8068653_SNP [dm3] 2L_8068653_SNP [dm6]	C	T	3.486e^-4	0.733	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8164613	3R_8164613_SNP [dm3] 3R_12338891_SNP [dm6]	T	A	3.486e^-4	0.733	EXON CR44941
3R	23367216	3R_23367216_SNP [dm3] 3R_27541494_SNP [dm6]	G	A	3.495e^-4	0.733	INTERGENIC
2L	920332	2L_920332_SNP [dm3] 2L_920332_SNP [dm6]	A	T	3.497e^-4	0.733	INTERGENIC
X	3443272	X_3443272_SNP [dm3] X_3549239_SNP [dm6]	A	G	3.525e^-4	0.733	INTRON CG32791
3R	4204345	3R_4204345_SNP [dm3] 3R_8378623_SNP [dm6]	G	A	3.533e^-4	0.733	DOWNSTREAM CG45263 INTRON CG45263
2L	3281676	2L_3281676_SNP [dm3] 2L_3281676_SNP [dm6]	T	A	3.535e^-4	0.733	INTERGENIC
3R	13410017	3R_13410017_DEL [dm3] 3R_17584295_DEL [dm6]	TGATT	T	3.535e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	744062	2L_744062_SNP [dm3] 2L_744062_SNP [dm6]	T	C	3.535e^-4	0.733	INTRON Eaat2
2L	16541422	2L_16541422_SNP [dm3] 2L_16541422_SNP [dm6]	T	G	3.536e^-4	0.733	INTERGENIC
2L	3232648	2L_3232648_SNP [dm3] 2L_3232648_SNP [dm6]	G	A	3.542e^-4	0.733	INTERGENIC
3L	14069442	3L_14069442_DEL [dm3] 3L_14076342_DEL [dm6]	AACAAGTTTTTGATAGCTAG...	T	3.545e^-4	0.733	UPSTREAM btl DOWNSTREAM Pex1 INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26261748	3R_26261748_INS [dm3] 3R_30436026_INS [dm6]	A	ACA	3.550e^-4	0.733	DOWNSTREAM CG15534 INTRON CG15537
2R	10921355	2R_10921355_SNP [dm3] 2R_15033850_SNP [dm6]	C	A	3.580e^-4	0.733	INTRON hbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9602070	3R_9602070_SNP [dm3] 3R_13776348_SNP [dm6]	C	T	3.588e^-4	0.733	SYNONYMOUS_CODING CG9297
2L	16553130	2L_16553130_SNP [dm3] 2L_16553130_SNP [dm6]	G	T	3.590e^-4	0.733	INTRON CG42389
2R	9123769	2R_9123769_SNP [dm3] 2R_13236264_SNP [dm6]	C	A	3.596e^-4	0.733	UPSTREAM CG4670 DOWNSTREAM CG4679 INTRON CG4676	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	13172818	3L_13172818_SNP [dm3] 3L_13179718_SNP [dm6]	A	T	3.600e^-4	0.733	INTERGENIC
3L	14154957	3L_14154957_SNP [dm3] 3L_14161857_SNP [dm6]	A	G	3.606e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	5971161	X_5971161_SNP [dm3] X_6077128_SNP [dm6]	G	A	3.609e^-4	0.733	INTRON CG4666
2R	17267627	2R_17267627_SNP [dm3] 2R_21380122_SNP [dm6]	T	A	3.613e^-4	0.733	UPSTREAM cv-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5113577	X_5113577_SNP [dm3] X_5219544_SNP [dm6]	A	G	3.614e^-4	0.733	INTRON CG15465 & 1 other
2L	7061753	2L_7061753_SNP [dm3] 2L_7061753_SNP [dm6]	C	T	3.620e^-4	0.733	UTR_3_PRIME Mnn1 UPSTREAM CG31907
3R	15627108	3R_15627108_SNP [dm3] 3R_19801386_SNP [dm6]	A	T	3.621e^-4	0.733	INTRON bnl	TF binding site mE1_TFBS_inv
2L	1517867	2L_1517867_SNP [dm3] 2L_1517867_SNP [dm6]	G	T	3.626e^-4	0.733	SYNONYMOUS_CODING halo UPSTREAM CG18132	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	5252258	3R_5252258_SNP [dm3] 3R_9426536_SNP [dm6]	T	C	3.632e^-4	0.733	INTRON ps	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23011234	3R_23011234_SNP [dm3] 3R_27185512_SNP [dm6]	A	G	3.633e^-4	0.733	INTRON Ser	TF binding site mE1_TFBS_HSA
X	17600332	X_17600332_SNP [dm3] X_17706299_SNP [dm6]	G	T	3.638e^-4	0.733	UTR_3_PRIME par-6
2R	7800524	2R_7800524_SNP [dm3] 2R_11913019_SNP [dm6]	A	C	3.641e^-4	0.733	UPSTREAM CG13183 INTERGENIC
2R	17785982	2R_17785982_SNP [dm3] 2R_21898477_SNP [dm6]	C	G	3.642e^-4	0.733	INTRON Fili
X	8883009	X_8883009_SNP [dm3] X_8988976_SNP [dm6]	T	A	3.642e^-4	0.733	INTRON rdgA & 1 other
2R	10897079	2R_10897079_SNP [dm3] 2R_15009574_SNP [dm6]	A	G	3.646e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7272993	2R_7272993_SNP [dm3] 2R_11385488_SNP [dm6]	A	G	3.649e^-4	0.733	INTRON sprt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14221822	2R_14221822_SNP [dm3] 2R_18334317_SNP [dm6]	C	T	3.649e^-4	0.733	INTRON sbb
3L	2901199	3L_2901199_SNP [dm3] 3L_2901199_SNP [dm6]	A	G	3.650e^-4	0.733	INTRON Shab	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7459184	3L_7459184_SNP [dm3] 3L_7466084_SNP [dm6]	T	C	3.658e^-4	0.733	SPLICE_SITE_REGION Tsp66A & 2 others INTRON Tsp66A & 2 others
X	19388556	X_19388556_SNP [dm3] X_19494523_SNP [dm6]	G	A	3.661e^-4	0.733	UTR_3_PRIME ksh UPSTREAM CG12204 & 2 others DOWNSTREAM CR44340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18635235	2R_18635235_SNP [dm3] 2R_22747730_SNP [dm6]	A	T	3.671e^-4	0.733	INTRON CG42260	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3361626	3R_3361626_SNP [dm3] 3R_7535904_SNP [dm6]	C	A	3.673e^-4	0.733	DOWNSTREAM alpha-Est4 INTRON alpha-Est5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19398712	2L_19398712_SNP [dm3] 2L_19398712_SNP [dm6]	A	G	3.688e^-4	0.733	UPSTREAM CG17544 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18247125	3L_18247125_SNP [dm3] 3L_18254025_SNP [dm6]	C	T	3.693e^-4	0.733	INTERGENIC
3R	10579742	3R_10579742_SNP [dm3] 3R_14754020_SNP [dm6]	C	A	3.695e^-4	0.733	NON_SYNONYMOUS_CODING CG7362 INTRON jvl	TF binding site mE1_TFBS_cad
3L	8079688	3L_8079688_SNP [dm3] 3L_8086588_SNP [dm6]	G	A	3.709e^-4	0.733	INTRON Ect4	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	867090	3L_867090_SNP [dm3] 3L_867090_SNP [dm6]	A	C	3.709e^-4	0.733	INTRON CG12502	TF binding site BDTNP1_TFBS_dl
2L	1013217	2L_1013217_INS [dm3] 2L_1013217_INS [dm6]	T	TCA	3.714e^-4	0.733	UTR_3_PRIME IA-2
2R	18339537	2R_18339537_SNP [dm3] 2R_22452032_SNP [dm6]	G	A	3.722e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13097961	3L_13097961_SNP [dm3] 3L_13104861_SNP [dm6]	C	A	3.724e^-4	0.733	INTERGENIC
2L	923649	2L_923649_DEL [dm3] 2L_923649_DEL [dm6]	TT	G	3.738e^-4	0.733	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9649665	3L_9649665_SNP [dm3] 3L_9656565_SNP [dm6]	T	G	3.743e^-4	0.733	INTRON fry & 1 other
3R	20003136	3R_20003136_SNP [dm3] 3R_24177414_SNP [dm6]	A	G	3.746e^-4	0.733	INTRON CG13606
2L	12265475	2L_12265475_INS [dm3] 2L_12265475_INS [dm6]	T	TAT	3.748e^-4	0.733	INTRON aret
3R	20006700	3R_20006700_SNP [dm3] 3R_24180978_SNP [dm6]	C	T	3.748e^-4	0.733	UTR_3_PRIME CG13606 INTRON CG13606
2L	12418465	2L_12418465_SNP [dm3] 2L_12418465_SNP [dm6]	C	T	3.749e^-4	0.733	INTRON vir-1
2R	16168289	2R_16168289_SNP [dm3] 2R_20280784_SNP [dm6]	T	C	3.754e^-4	0.733	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2R	4479585	2R_4479585_SNP [dm3] 2R_8592080_SNP [dm6]	A	G	3.758e^-4	0.733	UPSTREAM CG43183 DOWNSTREAM CG14752 INTERGENIC
2L	20525765	2L_20525765_SNP [dm3] 2L_20525765_SNP [dm6]	G	C	3.761e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3L	17520653	3L_17520653_SNP [dm3] 3L_17527553_SNP [dm6]	C	T	3.766e^-4	0.733	SYNONYMOUS_CODING Edc3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2L	14981225	2L_14981225_SNP [dm3] 2L_14981225_SNP [dm6]	A	G	3.769e^-4	0.733	INTRON mol
X	19388905	X_19388905_SNP [dm3] X_19494872_SNP [dm6]	G	A	3.773e^-4	0.733	UPSTREAM CG12204 & 2 others DOWNSTREAM CR44340 INTRON ksh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20000226	X_20000226_SNP [dm3] X_20106193_SNP [dm6]	T	A	3.774e^-4	0.733	INTERGENIC
X	6294768	X_6294768_SNP [dm3] X_6400735_SNP [dm6]	G	A	3.794e^-4	0.733	UPSTREAM CG33669 INTERGENIC
3L	12539066	3L_12539066_SNP [dm3] 3L_12545966_SNP [dm6]	G	C	3.795e^-4	0.733	INTRON sowah
3R	22908269	3R_22908269_SNP [dm3] 3R_27082547_SNP [dm6]	C	T	3.798e^-4	0.733	UTR_3_PRIME CG14257 DOWNSTREAM Cpr97Ea INTRON CG14257
2R	6174358	2R_6174358_SNP [dm3] 2R_10286853_SNP [dm6]	C	A	3.798e^-4	0.733	DOWNSTREAM CAP INTRON CAP
3R	14593837	3R_14593837_SNP [dm3] 3R_18768115_SNP [dm6]	A	G	3.799e^-4	0.733	INTRON CG7720
3R	10034212	3R_10034212_SNP [dm3] 3R_14208490_SNP [dm6]	G	C	3.800e^-4	0.733	INTRON Dop1R1
2L	1469854	2L_1469854_SNP [dm3] 2L_1469854_SNP [dm6]	T	C	3.805e^-4	0.733	INTERGENIC
3R	9130533	3R_9130533_SNP [dm3] 3R_13304811_SNP [dm6]	G	A	3.806e^-4	0.733	UTR_5_PRIME CG32473 DOWNSTREAM CG43208 INTRON CG32473	TF binding site mE1_TFBS_Trl
3L	10776466	3L_10776466_SNP [dm3] 3L_10783366_SNP [dm6]	T	C	3.813e^-4	0.733	INTERGENIC
2L	3239013	2L_3239013_SNP [dm3] 2L_3239013_SNP [dm6]	A	T	3.816e^-4	0.733	INTERGENIC
3L	2400853	3L_2400853_SNP [dm3] 3L_2400853_SNP [dm6]	G	T	3.818e^-4	0.733	INTRON CG45186
2R	17312303	2R_17312303_SNP [dm3] 2R_21424798_SNP [dm6]	A	T	3.820e^-4	0.733	INTRON Sdc
3L	9679415	3L_9679415_SNP [dm3] 3L_9686315_SNP [dm6]	A	G	3.822e^-4	0.733	DOWNSTREAM CG16719 INTRON CG6767
2R	6174259	2R_6174259_SNP [dm3] 2R_10286754_SNP [dm6]	T	C	3.830e^-4	0.733	DOWNSTREAM CAP INTRON CAP
3R	22248574	3R_22248574_SNP [dm3] 3R_26422852_SNP [dm6]	A	G	3.831e^-4	0.733	INTERGENIC
2R	13752358	2R_13752358_SNP [dm3] 2R_17864853_SNP [dm6]	G	T	3.831e^-4	0.733	NON_SYNONYMOUS_CODING thr	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
3L	9696880	3L_9696880_SNP [dm3] 3L_9703780_SNP [dm6]	C	T	3.834e^-4	0.733	UPSTREAM CG16711 & 1 other INTERGENIC
3L	7633457	3L_7633457_SNP [dm3] 3L_7640357_SNP [dm6]	A	G	3.839e^-4	0.733	DOWNSTREAM CG33275 & 2 others INTRON CG33276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9611475	3L_9611475_SNP [dm3] 3L_9618375_SNP [dm6]	A	G	3.843e^-4	0.733	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
2R	17788363	2R_17788363_DEL [dm3] 2R_21900858_DEL [dm6]	ATACAAATTTGTGAACAGAA...	A	3.845e^-4	0.733	INTRON Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7075699	2L_7075699_SNP [dm3] 2L_7075699_SNP [dm6]	T	C	3.848e^-4	0.733	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10233063	3R_10233063_SNP [dm3] 3R_14407341_SNP [dm6]	T	C	3.858e^-4	0.733	INTRON cv-c
3R	3879000	3R_3879000_SNP [dm3] 3R_8053278_SNP [dm6]	T	G	3.858e^-4	0.733	INTRON CG43060	TF binding site mE1_TFBS_inv
2L	14833607	2L_14833607_SNP [dm3] 2L_14833607_SNP [dm6]	A	G	3.860e^-4	0.733	INTERGENIC
2L	8878902	2L_8878902_SNP [dm3] 2L_8878902_SNP [dm6]	A	G	3.861e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2198573	3L_2198573_SNP [dm3] 3L_2198573_SNP [dm6]	T	C	3.870e^-4	0.733	DOWNSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1518282	2L_1518282_SNP [dm3] 2L_1518282_SNP [dm6]	G	A	3.880e^-4	0.733	UPSTREAM CG18132 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9625732	3R_9625732_SNP [dm3] 3R_13800010_SNP [dm6]	C	A	3.880e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6175712	2R_6175712_SNP [dm3] 2R_10288207_SNP [dm6]	A	C	3.881e^-4	0.733	SYNONYMOUS_CODING CAP UTR_5_PRIME CAP INTRON CAP
2L	7769453	2L_7769453_SNP [dm3] 2L_7769453_SNP [dm6]	C	T	3.886e^-4	0.733	INTRON CG7191
3R	6248640	3R_6248640_SNP [dm3] 3R_10422918_SNP [dm6]	A	G	3.888e^-4	0.733	INTERGENIC
3R	3852342	3R_3852342_SNP [dm3] 3R_8026620_SNP [dm6]	G	A	3.890e^-4	0.733	INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7903291	2R_7903291_SNP [dm3] 2R_12015786_SNP [dm6]	A	G	3.894e^-4	0.733	INTRON otk EXON CR44306	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
X	7729188	X_7729188_SNP [dm3] X_7835155_SNP [dm6]	T	C	3.896e^-4	0.733	INTRON CG1402
2L	8415696	2L_8415696_SNP [dm3] 2L_8415696_SNP [dm6]	G	A	3.901e^-4	0.733	UTR_5_PRIME Akap200 UPSTREAM Akap200 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	7903342	2R_7903342_SNP [dm3] 2R_12015837_SNP [dm6]	C	A	3.904e^-4	0.733	INTRON otk EXON CR44306	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
X	13241106	X_13241106_SNP [dm3] X_13347073_SNP [dm6]	C	T	3.910e^-4	0.733	UPSTREAM CR45709 INTERGENIC
2R	18769681	2R_18769681_SNP [dm3] 2R_22882158_SNP [dm6]	A	G	3.912e^-4	0.733	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10002328	2R_10002328_SNP [dm3] 2R_14114823_SNP [dm6]	A	G	3.913e^-4	0.733	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	16390580	2R_16390580_SNP [dm3] 2R_20503075_SNP [dm6]	A	C	3.917e^-4	0.733	UPSTREAM Obp57c INTERGENIC	regulatory region REDfly_CRMs
2L	16627011	2L_16627011_SNP [dm3] 2L_16627011_SNP [dm6]	G	A	3.922e^-4	0.733	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16617002	3R_16617002_SNP [dm3] 3R_20791280_SNP [dm6]	T	C	3.923e^-4	0.733	INTRON Syp	TF binding site BDTNP1_TFBS_twi
3L	3817888	3L_3817888_SNP [dm3] 3L_3817888_SNP [dm6]	T	C	3.929e^-4	0.733	SYNONYMOUS_CODING Scsalpha UPSTREAM enc	TF binding site BDTNP1_TFBS_dl
3L	18259092	3L_18259092_SNP [dm3] 3L_18265992_SNP [dm6]	A	T	3.940e^-4	0.733	INTERGENIC
2L	6903411	2L_6903411_SNP [dm3] 2L_6903411_SNP [dm6]	T	C	3.943e^-4	0.733	INTRON Nlg2
2R	16140623	2R_16140623_SNP [dm3] 2R_20253118_SNP [dm6]	C	G	3.948e^-4	0.733	INTRON CG9864
3R	15445314	3R_15445314_SNP [dm3] 3R_19619592_SNP [dm6]	T	C	3.951e^-4	0.733	INTRON CG6231
2R	6801136	2R_6801136_DEL [dm3] 2R_10913631_DEL [dm6]	ATGTA	A	3.952e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20950921	2L_20950921_SNP [dm3] 2L_20950921_SNP [dm6]	T	A	3.958e^-4	0.733	INTERGENIC
3L	14486425	3L_14486425_SNP [dm3] 3L_14493325_SNP [dm6]	A	G	3.962e^-4	0.733	INTRON bbg
2L	8010817	2L_8010817_SNP [dm3] 2L_8010817_SNP [dm6]	T	A	3.966e^-4	0.733	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	12644432	2L_12644432_SNP [dm3] 2L_12644432_SNP [dm6]	A	T	3.968e^-4	0.733	INTRON Ref2
3L	3485234	3L_3485234_SNP [dm3] 3L_3485234_SNP [dm6]	A	C	3.970e^-4	0.733	UPSTREAM CG43074 & 1 other INTRON CG42324
3L	19769758	3L_19769758_INS [dm3] 3L_19776658_INS [dm6]	T	TC	3.976e^-4	0.733	INTRON CG42637 & 1 other
3L	2278080	3L_2278080_SNP [dm3] 3L_2278080_SNP [dm6]	G	C	3.982e^-4	0.733	DOWNSTREAM yellow-g2 INTERGENIC
3L	10619943	3L_10619943_SNP [dm3] 3L_10626843_SNP [dm6]	T	A	3.990e^-4	0.733	DOWNSTREAM CG14151 INTRON CG34238
2L	12199329	2L_12199329_SNP [dm3] 2L_12199329_SNP [dm6]	G	A	3.993e^-4	0.733	INTRON aret

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.875e^-13)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.07407
In_3R_P	7.069e-05

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.4172	0.0404

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2377 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8264461	3R_8264461_SNP [dm3] 3R_12438739_SNP [dm6]	G	A	1.880e^-7	0.163	NON_SYNONYMOUS_CODING CG17207 UPSTREAM Desat1 DOWNSTREAM Desat2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	13713600	2R_13713600_SNP [dm3] 2R_17826095_SNP [dm6]	A	G	1.995e^-7	0.163	INTRON grh	transposable element FlyBase
3R	8341839	3R_8341839_DEL [dm3] 3R_12516117_DEL [dm6]	AGGAACTTAAATACACAATT...	A	2.599e^-7	0.163	INTRON Octbeta3R
3R	8216558	3R_8216558_SNP [dm3] 3R_12390836_SNP [dm6]	C	T	9.111e^-7	0.365	UTR_3_PRIME CG10096 & 1 other INTRON CG34402
3L	8078005	3L_8078005_SNP [dm3] 3L_8084905_SNP [dm6]	T	C	1.017e^-6	0.365	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
3R	2148209	3R_2148209_SNP [dm3] 3R_6322487_SNP [dm6]	G	A	1.464e^-6	0.365	INTRON Osi17
3L	8077974	3L_8077974_SNP [dm3] 3L_8084874_SNP [dm6]	C	T	1.602e^-6	0.365	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
3L	6395533	3L_6395533_SNP [dm3] 3L_6402433_SNP [dm6]	G	A	1.796e^-6	0.365	INTRON CG42747
3R	4858700	3R_4858700_SNP [dm3] 3R_9032978_SNP [dm6]	C	T	1.974e^-6	0.365	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4040573	3R_4040573_SNP [dm3] 3R_8214851_SNP [dm6]	A	T	2.043e^-6	0.365	INTERGENIC
X	4300225	X_4300225_SNP [dm3] X_4406192_SNP [dm6]	T	C	2.262e^-6	0.365	INTRON CR32773	TF binding site mE1_TFBS_chinmo
3R	8349986	3R_8349986_SNP [dm3] 3R_12524264_SNP [dm6]	T	C	2.717e^-6	0.365	INTRON Octbeta3R
3R	7728163	3R_7728163_SNP [dm3] 3R_11902441_SNP [dm6]	A	T	2.870e^-6	0.365	INTRON Cad87A
3R	14335563	3R_14335563_SNP [dm3] 3R_18509841_SNP [dm6]	T	C	2.878e^-6	0.365	INTRON fru
3R	8350023	3R_8350023_SNP [dm3] 3R_12524301_SNP [dm6]	C	A	2.942e^-6	0.365	INTRON Octbeta3R
3R	26512851	3R_26512851_SNP [dm3] 3R_30687129_SNP [dm6]	T	A	3.118e^-6	0.365	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13325132	3L_13325132_SNP [dm3] 3L_13332032_SNP [dm6]	A	G	4.249e^-6	0.399	INTERGENIC
2L	2526054	2L_2526054_SNP [dm3] 2L_2526054_SNP [dm6]	T	C	4.432e^-6	0.399	INTERGENIC
3R	8349787	3R_8349787_SNP [dm3] 3R_12524065_SNP [dm6]	C	A	4.679e^-6	0.399	INTRON Octbeta3R
3R	8286537	3R_8286537_SNP [dm3] 3R_12460815_SNP [dm6]	C	T	4.688e^-6	0.399	UPSTREAM CG5961 INTRON CG12267	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	735620	3L_735620_SNP [dm3] 3L_735620_SNP [dm6]	G	T	4.716e^-6	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	12788320	2R_12788320_SNP [dm3] 2R_16900815_SNP [dm6]	A	C	5.016e^-6	0.399	INTRON inaC
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	5.083e^-6	0.399	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3R	7728095	3R_7728095_SNP [dm3] 3R_11902373_SNP [dm6]	T	C	5.223e^-6	0.399	INTRON Cad87A
3R	2776414	3R_2776414_SNP [dm3] 3R_6950692_SNP [dm6]	G	A	5.436e^-6	0.399	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16861822	3R_16861822_SNP [dm3] 3R_21036100_SNP [dm6]	C	G	5.526e^-6	0.399	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	6.727e^-6	0.446	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	7728045	3R_7728045_SNP [dm3] 3R_11902323_SNP [dm6]	C	A	6.914e^-6	0.446	INTRON Cad87A
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	7.020e^-6	0.446	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8234140	3R_8234140_SNP [dm3] 3R_12408418_SNP [dm6]	C	G	7.131e^-6	0.446	NON_SYNONYMOUS_CODING CG5196 UPSTREAM CG5196 DOWNSTREAM CG5167	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	15104877	2L_15104877_SNP [dm3] 2L_15104877_SNP [dm6]	C	T	7.761e^-6	0.451	INTERGENIC
3R	8253437	3R_8253437_SNP [dm3] 3R_12427715_SNP [dm6]	C	T	8.277e^-6	0.451	NON_SYNONYMOUS_CODING Sas DOWNSTREAM CG5641	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8286850	3R_8286850_SNP [dm3] 3R_12461128_SNP [dm6]	G	A	8.399e^-6	0.451	SYNONYMOUS_CODING CG12267 UPSTREAM CG5961	TF binding site mE1_TFBS_inv
3R	8235993	3R_8235993_SNP [dm3] 3R_12410271_SNP [dm6]	T	G	8.409e^-6	0.451	SPLICE_SITE_REGION CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	17912729	3R_17912729_SNP [dm3] 3R_22087007_SNP [dm6]	G	A	8.514e^-6	0.451	UPSTREAM CG5791 & 1 other INTRON CG5778
3R	8234936	3R_8234936_SNP [dm3] 3R_12409214_SNP [dm6]	A	G	8.650e^-6	0.451	UTR_5_PRIME CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26505012	3R_26505012_SNP [dm3] 3R_30679290_SNP [dm6]	C	T	9.445e^-6	0.456	INTERGENIC
3R	26505170	3R_26505170_SNP [dm3] 3R_30679448_SNP [dm6]	C	T	9.476e^-6	0.456	INTERGENIC
3R	7728056	3R_7728056_DEL [dm3] 3R_11902334_DEL [dm6]	TT	T	9.554e^-6	0.456	INTRON Cad87A
3R	24599566	3R_24599566_INS [dm3] 3R_28773844_INS [dm6]	T	TT	9.719e^-6	0.456	INTERGENIC
3R	23509134	3R_23509134_SNP [dm3] 3R_27683412_SNP [dm6]	C	T	1.012e^-5	0.463	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26087341	3R_26087341_SNP [dm3] 3R_30261619_SNP [dm6]	A	T	1.102e^-5	0.492	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	14122277	3L_14122277_SNP [dm3] 3L_14129177_SNP [dm6]	C	A	1.141e^-5	0.497	INTRON Sox21b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8164413	3R_8164413_SNP [dm3] 3R_12338691_SNP [dm6]	A	C	1.269e^-5	0.54	INTRON CR44941
3R	25818024	3R_25818024_SNP [dm3] 3R_29992302_SNP [dm6]	A	G	1.295e^-5	0.54	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	4463463	3R_4463463_SNP [dm3] 3R_8637741_SNP [dm6]	G	A	1.339e^-5	0.546	INTERGENIC
3R	1795589	3R_1795589_SNP [dm3] 3R_5969867_SNP [dm6]	G	A	1.483e^-5	0.592	UPSTREAM CR44926 INTERGENIC
2R	6305228	2R_6305228_SNP [dm3] 2R_10417723_SNP [dm6]	T	C	1.624e^-5	0.62	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	1.651e^-5	0.62	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	6396334	3L_6396334_SNP [dm3] 3L_6403234_SNP [dm6]	G	C	1.654e^-5	0.62	INTRON CG42747
3R	15592989	3R_15592989_INS [dm3] 3R_19767267_INS [dm6]	A	ATCCTGGCACCCTGGCA...	1.763e^-5	0.634	INTRON GluClalpha
3R	8234276	3R_8234276_SNP [dm3] 3R_12408554_SNP [dm6]	C	G	1.788e^-5	0.634	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	8083034	3R_8083034_SNP [dm3] 3R_12257312_SNP [dm6]	A	T	1.798e^-5	0.634	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	14960664	3R_14960664_SNP [dm3] 3R_19134942_SNP [dm6]	C	T	1.932e^-5	0.634	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3R	8164613	3R_8164613_SNP [dm3] 3R_12338891_SNP [dm6]	T	A	2.018e^-5	0.634	EXON CR44941
3L	2278086	3L_2278086_SNP [dm3] 3L_2278086_SNP [dm6]	T	G	2.039e^-5	0.634	DOWNSTREAM yellow-g2 INTERGENIC
3L	6396124	3L_6396124_SNP [dm3] 3L_6403024_SNP [dm6]	A	G	2.042e^-5	0.634	INTRON CG42747
3L	2278285	3L_2278285_SNP [dm3] 3L_2278285_SNP [dm6]	C	A	2.047e^-5	0.634	DOWNSTREAM yellow-g2 INTERGENIC	TF binding site mE1_TFBS_inv
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	2.062e^-5	0.634	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	13977568	X_13977568_SNP [dm3] X_14083535_SNP [dm6]	G	T	2.088e^-5	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	1756602	3R_1756602_SNP [dm3] 3R_5930880_SNP [dm6]	A	G	2.122e^-5	0.634	INTRON CG34113
3R	9654654	3R_9654654_SNP [dm3] 3R_13828932_SNP [dm6]	T	A	2.135e^-5	0.634	UPSTREAM Mst87F DOWNSTREAM CR43300 INTERGENIC
3R	3550136	3R_3550136_SNP [dm3] 3R_7724414_SNP [dm6]	T	A	2.205e^-5	0.634	UTR_3_PRIME CG2616	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12561460	3L_12561460_SNP [dm3] 3L_12568360_SNP [dm6]	C	A	2.245e^-5	0.634	INTRON sowah
X	4878527	X_4878527_SNP [dm3] X_4984494_SNP [dm6]	G	A	2.262e^-5	0.634	INTRON CR44833	regulatory region REDfly_CRMs
2R	12887593	2R_12887593_SNP [dm3] 2R_17000088_SNP [dm6]	A	G	2.278e^-5	0.634	SYNONYMOUS_CODING ste24b DOWNSTREAM ste24a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20006816	3R_20006816_SNP [dm3] 3R_24181094_SNP [dm6]	A	C	2.372e^-5	0.634	UTR_3_PRIME CG13606 INTRON CG13606
3R	3497440	3R_3497440_SNP [dm3] 3R_7671718_SNP [dm6]	C	T	2.376e^-5	0.634	INTRON Nlg1
3L	1444499	3L_1444499_SNP [dm3] 3L_1444499_SNP [dm6]	T	G	2.377e^-5	0.634	INTRON Ptp61F
3L	2278080	3L_2278080_SNP [dm3] 3L_2278080_SNP [dm6]	G	C	2.498e^-5	0.634	DOWNSTREAM yellow-g2 INTERGENIC
2R	13344923	2R_13344923_SNP [dm3] 2R_17457418_SNP [dm6]	A	C	2.524e^-5	0.634	UPSTREAM robls54B & 1 other DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
X	9753967	X_9753967_SNP [dm3] X_9859934_SNP [dm6]	G	C	2.550e^-5	0.634	INTERGENIC
3R	3219936	3R_3219936_SNP [dm3] 3R_7394214_SNP [dm6]	G	A	2.568e^-5	0.634	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19122571	2R_19122571_SNP [dm3] 2R_23235048_SNP [dm6]	T	C	2.585e^-5	0.634	INTERGENIC
3R	8280154	3R_8280154_SNP [dm3] 3R_12454432_SNP [dm6]	G	A	2.615e^-5	0.634	INTRON CG18549	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	6396814	3L_6396814_SNP [dm3] 3L_6403714_SNP [dm6]	T	A	2.616e^-5	0.634	INTRON CG42747
3R	14541261	3R_14541261_DEL [dm3] 3R_18715539_DEL [dm6]	TC	T	2.617e^-5	0.634	UTR_3_PRIME VAChT INTRON Cha
3R	8280116	3R_8280116_SNP [dm3] 3R_12454394_SNP [dm6]	A	C	2.638e^-5	0.634	INTRON CG18549	TF binding site BDTNP1_TFBS_prd
2R	6305220	2R_6305220_SNP [dm3] 2R_10417715_SNP [dm6]	G	T	2.762e^-5	0.635	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	571997	3L_571997_SNP [dm3] 3L_571997_SNP [dm6]	G	A	2.769e^-5	0.635	INTRON hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7087114	3L_7087114_SNP [dm3] 3L_7094014_SNP [dm6]	C	T	2.815e^-5	0.635	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25635394	3R_25635394_SNP [dm3] 3R_29809672_SNP [dm6]	T	G	2.901e^-5	0.635	NON_SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13344924	2R_13344924_SNP [dm3] 2R_17457419_SNP [dm6]	G	C	3.046e^-5	0.635	UPSTREAM robls54B & 1 other DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
3R	8164617	3R_8164617_SNP [dm3] 3R_12338895_SNP [dm6]	T	C	3.100e^-5	0.635	EXON CR44941
X	13977711	X_13977711_SNP [dm3] X_14083678_SNP [dm6]	C	T	3.140e^-5	0.635	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	8234000	3R_8234000_SNP [dm3] 3R_12408278_SNP [dm6]	A	G	3.143e^-5	0.635	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	15077112	2L_15077112_SNP [dm3] 2L_15077112_SNP [dm6]	G	T	3.170e^-5	0.635	INTRON CG15270
3R	26513130	3R_26513130_SNP [dm3] 3R_30687408_SNP [dm6]	G	A	3.204e^-5	0.635	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23000258	3R_23000258_DEL [dm3] 3R_27174536_DEL [dm6]	AT	A	3.208e^-5	0.635	INTRON Ser	TF binding site mE1_TFBS_cad
3L	6585791	3L_6585791_SNP [dm3] 3L_6592691_SNP [dm6]	G	T	3.212e^-5	0.635	UTR_3_PRIME CG18769 DOWNSTREAM CG18769
3L	13326315	3L_13326315_SNP [dm3] 3L_13333215_SNP [dm6]	T	A	3.229e^-5	0.635	INTERGENIC
X	13977559	X_13977559_SNP [dm3] X_14083526_SNP [dm6]	T	A	3.289e^-5	0.635	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	24844793	3R_24844793_INS [dm3] 3R_29019071_INS [dm6]	A	AA	3.311e^-5	0.635	INTRON wat
3R	8350126	3R_8350126_SNP [dm3] 3R_12524404_SNP [dm6]	C	T	3.344e^-5	0.635	INTRON Octbeta3R
2L	19637775	2L_19637775_DEL [dm3] 2L_19637775_DEL [dm6]	ATAAATAA	A	3.404e^-5	0.635	INTRON Lar
X	14518170	X_14518170_SNP [dm3] X_14624137_SNP [dm6]	A	T	3.411e^-5	0.635	INTRON NetA
3R	15596110	3R_15596110_SNP [dm3] 3R_19770388_SNP [dm6]	G	T	3.420e^-5	0.635	UTR_3_PRIME GluClalpha DOWNSTREAM CG6300 INTRON GluClalpha
X	4362481	X_4362481_SNP [dm3] X_4468448_SNP [dm6]	A	C	3.433e^-5	0.635	INTRON bi & 1 other	TF binding site mE1_TFBS_chinmo
3R	10119268	3R_10119268_SNP [dm3] 3R_14293546_SNP [dm6]	G	C	3.457e^-5	0.635	INTRON CG12207
3R	17874708	3R_17874708_INS [dm3] 3R_22048986_INS [dm6]	C	CAGGC	3.469e^-5	0.635	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23000704	3R_23000704_DEL [dm3] 3R_27174982_DEL [dm6]	ATGAACCCCAGTTCA...	A	3.482e^-5	0.635	INTRON Ser	TF binding site mE1_TFBS_cad
3L	7087080	3L_7087080_SNP [dm3] 3L_7093980_SNP [dm6]	C	T	3.560e^-5	0.635	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9161604	3L_9161604_SNP [dm3] 3L_9168504_SNP [dm6]	T	G	3.579e^-5	0.635	INTRON Rdl
3L	19259102	3L_19259102_SNP [dm3] 3L_19266002_SNP [dm6]	A	C	3.587e^-5	0.635	UPSTREAM CG45081 DOWNSTREAM CG9629 INTRON CG9666 & 1 other
2L	8068653	2L_8068653_SNP [dm3] 2L_8068653_SNP [dm6]	C	T	3.622e^-5	0.635	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17316868	3L_17316868_SNP [dm3] 3L_17323768_SNP [dm6]	C	A	3.658e^-5	0.635	NON_SYNONYMOUS_CODING CG13724 DOWNSTREAM CG13725
3L	13326311	3L_13326311_MNP [dm3] 3L_13333211_MNP [dm6]	TTG	AAA	3.658e^-5	0.635	INTERGENIC
3L	13326317	3L_13326317_SNP [dm3] 3L_13333217_SNP [dm6]	T	A	3.658e^-5	0.635	INTERGENIC
3R	8349830	3R_8349830_SNP [dm3] 3R_12524108_SNP [dm6]	G	T	3.781e^-5	0.647	INTRON Octbeta3R
2R	14362981	2R_14362981_SNP [dm3] 2R_18475476_SNP [dm6]	A	G	3.824e^-5	0.647	INTRON CG30116
X	20396997	X_20396997_DEL [dm3] X_20525970_DEL [dm6]	TA	T	3.974e^-5	0.647	INTERGENIC	transposable element FlyBase
2R	7121591	2R_7121591_SNP [dm3] 2R_11234086_SNP [dm6]	G	A	3.995e^-5	0.647	SYNONYMOUS_CODING CG13228 UPSTREAM CG13218
2R	5234951	2R_5234951_SNP [dm3] 2R_9347446_SNP [dm6]	T	A	3.999e^-5	0.647	UTR_3_PRIME Or45a INTRON CG13954 & 1 other
X	8142738	X_8142738_SNP [dm3] X_8248705_SNP [dm6]	T	G	3.999e^-5	0.647	UTR_3_PRIME ND75 DOWNSTREAM Trxr-1
3R	5001499	3R_5001499_SNP [dm3] 3R_9175777_SNP [dm6]	A	C	4.004e^-5	0.647	INTRON pum
3R	8083272	3R_8083272_SNP [dm3] 3R_12257550_SNP [dm6]	C	T	4.073e^-5	0.647	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	17682853	3R_17682853_SNP [dm3] 3R_21857131_SNP [dm6]	A	G	4.079e^-5	0.647	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	19389695	X_19389695_SNP [dm3] X_19495662_SNP [dm6]	G	C	4.104e^-5	0.647	UTR_5_PRIME CG14200 UPSTREAM ksh INTRON Pfrx EXON CR44340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	16551859	3L_16551859_SNP [dm3] 3L_16558759_SNP [dm6]	C	T	4.109e^-5	0.647	DOWNSTREAM CG4229 INTERGENIC
3L	2273734	3L_2273734_SNP [dm3] 3L_2273734_SNP [dm6]	T	C	4.142e^-5	0.647	UPSTREAM tRNA:CR32303 & 1 other INTERGENIC
3R	8342670	3R_8342670_DEL [dm3] 3R_12516948_DEL [dm6]	CCGACTGCGC	C	4.202e^-5	0.649	CODON_DELETION Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13325302	3L_13325302_SNP [dm3] 3L_13332202_SNP [dm6]	G	A	4.223e^-5	0.649	INTERGENIC
3L	13326320	3L_13326320_DEL [dm3] 3L_13333220_DEL [dm6]	TACCTCGCCT	T	4.321e^-5	0.658	INTERGENIC
X	10809680	X_10809680_SNP [dm3] X_10915647_SNP [dm6]	C	T	4.354e^-5	0.658	NON_SYNONYMOUS_CODING CG43901 INTRON CG43901	TF binding site mE1_TFBS_chinmo
3R	1741656	3R_1741656_DEL [dm3] 3R_5915934_DEL [dm6]	TT	T	4.394e^-5	0.658	INTRON CG34113
X	13977609	X_13977609_SNP [dm3] X_14083576_SNP [dm6]	G	A	4.423e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6305127	2R_6305127_SNP [dm3] 2R_10417622_SNP [dm6]	G	A	4.511e^-5	0.664	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	2503646	X_2503646_SNP [dm3] X_2609613_SNP [dm6]	A	G	4.587e^-5	0.664	SYNONYMOUS_CODING CG8636 UPSTREAM Bzd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2169004	3R_2169004_SNP [dm3] 3R_6343282_SNP [dm6]	A	G	4.588e^-5	0.664	NON_SYNONYMOUS_CODING CG10298 UPSTREAM CG17919 DOWNSTREAM CG17917
3R	15636850	3R_15636850_SNP [dm3] 3R_19811128_SNP [dm6]	A	G	4.628e^-5	0.664	INTRON bnl
3R	2139791	3R_2139791_SNP [dm3] 3R_6314069_SNP [dm6]	C	T	4.636e^-5	0.664	INTRON Osi17
2R	13343267	2R_13343267_SNP [dm3] 2R_17455762_SNP [dm6]	A	C	4.736e^-5	0.669	UTR_3_PRIME robls54B UPSTREAM robl DOWNSTREAM CG10764
2R	6305125	2R_6305125_SNP [dm3] 2R_10417620_SNP [dm6]	A	G	4.818e^-5	0.669	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19122570	2R_19122570_SNP [dm3] 2R_23235047_SNP [dm6]	T	C	4.846e^-5	0.669	INTERGENIC
2R	6305169	2R_6305169_SNP [dm3] 2R_10417664_SNP [dm6]	A	G	4.866e^-5	0.669	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10496267	2L_10496267_SNP [dm3] 2L_10496267_SNP [dm6]	G	A	4.986e^-5	0.669	INTRON Myo31DF
2R	13349884	2R_13349884_DEL [dm3] 2R_17462379_DEL [dm6]	GAG	G	5.069e^-5	0.669	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	5.089e^-5	0.669	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	13326319	3L_13326319_SNP [dm3] 3L_13333219_SNP [dm6]	A	G	5.118e^-5	0.669	INTERGENIC
3R	23515540	3R_23515540_SNP [dm3] 3R_27689818_SNP [dm6]	T	C	5.129e^-5	0.669	NON_SYNONYMOUS_CODING CG12880	TF binding site mE1_TFBS_chinmo
3L	15754559	3L_15754559_SNP [dm3] 3L_15761459_SNP [dm6]	A	G	5.239e^-5	0.669	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6490804	3L_6490804_SNP [dm3] 3L_6497704_SNP [dm6]	C	T	5.265e^-5	0.669	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5235381	2R_5235381_SNP [dm3] 2R_9347876_SNP [dm6]	G	C	5.289e^-5	0.669	UTR_3_PRIME Or45a INTRON CG13954 & 1 other
3L	19963863	3L_19963863_SNP [dm3] 3L_19970763_SNP [dm6]	T	G	5.291e^-5	0.669	INTRON Ac76E	TF binding site mE1_TFBS_chinmo
2R	13441356	2R_13441356_SNP [dm3] 2R_17553851_SNP [dm6]	G	T	5.292e^-5	0.669	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_sens
3L	13892034	3L_13892034_SNP [dm3] 3L_13898934_SNP [dm6]	A	G	5.314e^-5	0.669	INTRON dysc
3R	3984938	3R_3984938_SNP [dm3] 3R_8159216_SNP [dm6]	G	A	5.320e^-5	0.669	INTRON grn
2L	3403110	2L_3403110_SNP [dm3] 2L_3403110_SNP [dm6]	G	A	5.345e^-5	0.669	INTERGENIC
X	9446772	X_9446772_SNP [dm3] X_9552739_SNP [dm6]	G	A	5.404e^-5	0.669	SYNONYMOUS_CODING l_1_G0320	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	13236936	X_13236936_SNP [dm3] X_13342903_SNP [dm6]	G	A	5.407e^-5	0.669	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18330106	2R_18330106_SNP [dm3] 2R_22442601_SNP [dm6]	C	T	5.413e^-5	0.669	INTERGENIC
2L	4102584	2L_4102584_SNP [dm3] 2L_4102584_SNP [dm6]	C	A	5.452e^-5	0.669	INTRON ed
3L	6396416	3L_6396416_SNP [dm3] 3L_6403316_SNP [dm6]	G	A	5.454e^-5	0.669	INTRON CG42747
3R	3447691	3R_3447691_SNP [dm3] 3R_7621969_SNP [dm6]	T	A	5.526e^-5	0.669	INTRON CG34127
X	13977643	X_13977643_SNP [dm3] X_14083610_SNP [dm6]	A	T	5.588e^-5	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	16163701	2L_16163701_DEL [dm3] 2L_16163701_DEL [dm6]	TGTCTGCGCGGTCA...	G	5.597e^-5	0.669	INTERGENIC
3R	8083342	3R_8083342_SNP [dm3] 3R_12257620_SNP [dm6]	G	C	5.600e^-5	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6305174	2R_6305174_SNP [dm3] 2R_10417669_SNP [dm6]	A	G	5.646e^-5	0.67	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	6316959	3L_6316959_SNP [dm3] 3L_6323859_SNP [dm6]	C	T	5.754e^-5	0.679	INTERGENIC
3R	8083232	3R_8083232_SNP [dm3] 3R_12257510_SNP [dm6]	T	A	5.944e^-5	0.697	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	10625290	X_10625290_DEL [dm3] X_10731257_DEL [dm6]	AAA	G	5.988e^-5	0.698	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	3070963	X_3070963_DEL [dm3] X_3176930_DEL [dm6]	AA	A	6.064e^-5	0.702	DOWNSTREAM CG3939 INTRON dnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	7087049	3L_7087049_SNP [dm3] 3L_7093949_SNP [dm6]	T	G	6.097e^-5	0.702	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17908415	3R_17908415_SNP [dm3] 3R_22082693_SNP [dm6]	G	A	6.235e^-5	0.707	INTRON CG13408
2R	10620774	2R_10620774_SNP [dm3] 2R_14733269_SNP [dm6]	C	T	6.277e^-5	0.707	INTERGENIC
2R	13345680	2R_13345680_SNP [dm3] 2R_17458175_SNP [dm6]	G	C	6.310e^-5	0.707	UPSTREAM CG14478 INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17908575	3R_17908575_SNP [dm3] 3R_22082853_SNP [dm6]	C	G	6.359e^-5	0.707	INTRON CG13408
2L	13237887	2L_13237887_INS [dm3] 2L_13237887_INS [dm6]	T	TT	6.387e^-5	0.707	INTRON CG5867
3R	10119255	3R_10119255_SNP [dm3] 3R_14293533_SNP [dm6]	T	A	6.408e^-5	0.707	INTRON CG12207
X	13977622	X_13977622_SNP [dm3] X_14083589_SNP [dm6]	A	G	6.510e^-5	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12226657	2L_12226657_SNP [dm3] 2L_12226657_SNP [dm6]	G	A	6.561e^-5	0.707	INTRON aret
3R	22559561	3R_22559561_SNP [dm3] 3R_26733839_SNP [dm6]	G	A	6.588e^-5	0.707	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8161603	3R_8161603_SNP [dm3] 3R_12335881_SNP [dm6]	C	G	6.625e^-5	0.707	UPSTREAM CR44941 INTERGENIC
2R	9136386	2R_9136386_SNP [dm3] 2R_13248881_SNP [dm6]	C	T	6.636e^-5	0.707	DOWNSTREAM CG4712 & 1 other INTERGENIC
3L	4565711	3L_4565711_SNP [dm3] 3L_4565711_SNP [dm6]	G	C	6.738e^-5	0.707	INTRON CG42540	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	6.744e^-5	0.707	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	810934	3R_810934_SNP [dm3] 3R_4985212_SNP [dm6]	T	C	6.788e^-5	0.707	UPSTREAM CG14662 INTRON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	1190635	2L_1190635_DEL [dm3] 2L_1190635_DEL [dm6]	AAGAGATAAAC...	A	6.788e^-5	0.707	INTRON CG5001
3R	24610882	3R_24610882_SNP [dm3] 3R_28785160_SNP [dm6]	C	A	6.790e^-5	0.707	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13326306	3L_13326306_SNP [dm3] 3L_13333206_SNP [dm6]	A	C	6.831e^-5	0.707	INTERGENIC
3L	13165349	3L_13165349_SNP [dm3] 3L_13172249_SNP [dm6]	C	T	6.859e^-5	0.707	INTERGENIC
X	20149989	X_20149989_SNP [dm3] X_20278963_SNP [dm6]	C	T	6.883e^-5	0.707	INTERGENIC
3L	13500684	3L_13500684_SNP [dm3] 3L_13507584_SNP [dm6]	T	A	6.898e^-5	0.707	SYNONYMOUS_CODING Spt20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12566371	3R_12566371_SNP [dm3] 3R_16740649_SNP [dm6]	A	G	6.940e^-5	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
X	3143708	X_3143708_SNP [dm3] X_3249675_SNP [dm6]	G	C	6.988e^-5	0.708	UTR_5_PRIME Sgs4 UPSTREAM Pig1 INTRON dnc	regulatory region REDfly_CRMs
X	19091984	X_19091984_SNP [dm3] X_19197951_SNP [dm6]	G	T	7.042e^-5	0.71	UTR_3_PRIME CG7990
3L	22599829	3L_22599829_SNP [dm3] 3L_22606729_SNP [dm6]	C	A	7.082e^-5	0.71	SYNONYMOUS_CODING CG6914 INTRON CG14459	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8338130	3R_8338130_SNP [dm3] 3R_12512408_SNP [dm6]	G	C	7.132e^-5	0.711	UTR_3_PRIME Octbeta3R DOWNSTREAM Hsp70Bc	TF binding site mE1_TFBS_cad
X	13977686	X_13977686_SNP [dm3] X_14083653_SNP [dm6]	A	C	7.201e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	26514626	3R_26514626_SNP [dm3] 3R_30688904_SNP [dm6]	C	T	7.203e^-5	0.711	INTERGENIC
3L	13325325	3L_13325325_SNP [dm3] 3L_13332225_SNP [dm6]	A	T	7.330e^-5	0.715	INTERGENIC
3R	3219933	3R_3219933_DEL [dm3] 3R_7394211_DEL [dm6]	TC	T	7.392e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13344452	2R_13344452_SNP [dm3] 2R_17456947_SNP [dm6]	A	G	7.397e^-5	0.715	SYNONYMOUS_CODING robl UPSTREAM robls54B & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3R	8268032	3R_8268032_SNP [dm3] 3R_12442310_SNP [dm6]	T	C	7.440e^-5	0.715	INTRON Desat1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	7263459	2R_7263459_SNP [dm3] 2R_11375954_SNP [dm6]	T	A	7.500e^-5	0.715	INTRON CG13203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2312098	3R_2312098_SNP [dm3] 3R_6486376_SNP [dm6]	C	T	7.549e^-5	0.715	UPSTREAM CG15186 INTRON CG15186
2L	21725821	2L_21725821_SNP [dm3] 2L_21725821_SNP [dm6]	A	C	7.588e^-5	0.715	INTRON CG31619	transposable element FlyBase
3R	25848192	3R_25848192_SNP [dm3] 3R_30022470_SNP [dm6]	T	A	7.589e^-5	0.715	SYNONYMOUS_CODING RpS28a UPSTREAM Axn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19287727	3R_19287727_SNP [dm3] 3R_23462005_SNP [dm6]	C	G	7.637e^-5	0.715	INTRON CG4374
3R	20006700	3R_20006700_SNP [dm3] 3R_24180978_SNP [dm6]	C	T	7.760e^-5	0.715	UTR_3_PRIME CG13606 INTRON CG13606
3L	2380965	3L_2380965_SNP [dm3] 3L_2380965_SNP [dm6]	A	G	7.803e^-5	0.715	INTRON CG45186
2R	14172296	2R_14172296_SNP [dm3] 2R_18284791_SNP [dm6]	G	A	7.819e^-5	0.715	DOWNSTREAM sbb INTRON sbb
3L	19967126	3L_19967126_DEL [dm3] 3L_19974026_DEL [dm6]	TATCTAATGTTGAA...	T	7.897e^-5	0.715	INTRON Ac76E
2R	14172307	2R_14172307_SNP [dm3] 2R_18284802_SNP [dm6]	T	A	7.909e^-5	0.715	DOWNSTREAM sbb INTRON sbb
2R	17155500	2R_17155500_SNP [dm3] 2R_21267995_SNP [dm6]	T	G	7.983e^-5	0.715	UPSTREAM CG30393 INTRON Rgk3
3R	15354270	3R_15354270_SNP [dm3] 3R_19528548_SNP [dm6]	A	G	8.018e^-5	0.715	INTRON Dys
2R	6677360	2R_6677360_SNP [dm3] 2R_10789855_SNP [dm6]	G	A	8.023e^-5	0.715	INTRON CG33144	TF binding site mE1_TFBS_inv
2R	6305158	2R_6305158_SNP [dm3] 2R_10417653_SNP [dm6]	C	T	8.062e^-5	0.715	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	12452583	X_12452583_SNP [dm3] X_12558550_SNP [dm6]	A	C	8.082e^-5	0.715	INTRON CG43921
3L	4565617	3L_4565617_SNP [dm3] 3L_4565617_SNP [dm6]	C	A	8.130e^-5	0.715	INTRON CG42540	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4629307	2L_4629307_SNP [dm3] 2L_4629307_SNP [dm6]	T	C	8.152e^-5	0.715	INTERGENIC
3L	7087053	3L_7087053_SNP [dm3] 3L_7093953_SNP [dm6]	C	T	8.159e^-5	0.715	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10711850	2R_10711850_DEL [dm3] 2R_14824345_DEL [dm6]	AA	A	8.234e^-5	0.715	EXON CR45329
3L	740760	3L_740760_SNP [dm3] 3L_740760_SNP [dm6]	A	G	8.268e^-5	0.715	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3R	3554261	3R_3554261_SNP [dm3] 3R_7728539_SNP [dm6]	G	A	8.380e^-5	0.715	INTERGENIC
2R	6801815	2R_6801815_SNP [dm3] 2R_10914310_SNP [dm6]	G	A	8.444e^-5	0.715	INTERGENIC
3L	571533	3L_571533_SNP [dm3] 3L_571533_SNP [dm6]	G	C	8.460e^-5	0.715	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	571587	3L_571587_SNP [dm3] 3L_571587_SNP [dm6]	T	G	8.460e^-5	0.715	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8234219	3R_8234219_SNP [dm3] 3R_12408497_SNP [dm6]	A	T	8.471e^-5	0.715	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	15244090	3L_15244090_DEL [dm3] 3L_15250990_DEL [dm6]	GTTTATGTTG	G	8.476e^-5	0.715	INTERGENIC
3L	18645916	3L_18645916_SNP [dm3] 3L_18652816_SNP [dm6]	T	A	8.506e^-5	0.715	INTRON MYPT-75D
3L	16514975	3L_16514975_SNP [dm3] 3L_16521875_SNP [dm6]	G	T	8.533e^-5	0.715	INTRON CG43373
3R	9795991	3R_9795991_SNP [dm3] 3R_13970269_SNP [dm6]	C	A	8.542e^-5	0.715	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
X	15431207	X_15431207_SNP [dm3] X_15537174_SNP [dm6]	G	T	8.549e^-5	0.715	INTRON Ac13E
2L	6538674	2L_6538674_SNP [dm3] 2L_6538674_SNP [dm6]	T	G	8.572e^-5	0.715	INTRON eya
3L	12247082	3L_12247082_SNP [dm3] 3L_12253982_SNP [dm6]	C	A	8.729e^-5	0.718	INTRON app
3L	7449480	3L_7449480_SNP [dm3] 3L_7456380_SNP [dm6]	C	T	8.792e^-5	0.718	SYNONYMOUS_CODING ppk26	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15243758	3L_15243758_SNP [dm3] 3L_15250658_SNP [dm6]	G	T	8.823e^-5	0.718	INTERGENIC
3R	24610830	3R_24610830_SNP [dm3] 3R_28785108_SNP [dm6]	C	T	8.827e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21656489	3R_21656489_SNP [dm3] 3R_25830767_SNP [dm6]	T	A	8.920e^-5	0.718	UTR_3_PRIME Mst57Db UPSTREAM Sfp96F DOWNSTREAM Mst57Da
X	13977656	X_13977656_SNP [dm3] X_14083623_SNP [dm6]	G	C	9.138e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	8968360	X_8968360_SNP [dm3] X_9074327_SNP [dm6]	T	G	9.151e^-5	0.718	INTRON CG44325
2R	9123877	2R_9123877_SNP [dm3] 2R_13236372_SNP [dm6]	T	C	9.169e^-5	0.718	SYNONYMOUS_CODING CG4676 DOWNSTREAM CG4679	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8055296	X_8055296_SNP [dm3] X_8161263_SNP [dm6]	T	C	9.262e^-5	0.718	NON_SYNONYMOUS_CODING CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	582018	3L_582018_SNP [dm3] 3L_582018_SNP [dm6]	C	G	9.264e^-5	0.718	SYNONYMOUS_CODING Ppm1 DOWNSTREAM hipk & 1 other
3L	19969059	3L_19969059_SNP [dm3] 3L_19975959_SNP [dm6]	G	T	9.315e^-5	0.718	INTRON Ac76E
3R	18132685	3R_18132685_SNP [dm3] 3R_22306963_SNP [dm6]	G	A	9.319e^-5	0.718	INTERGENIC
X	13959404	X_13959404_SNP [dm3] X_14065371_SNP [dm6]	G	A	9.350e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14008221	2L_14008221_SNP [dm3] 2L_14008221_SNP [dm6]	G	T	9.383e^-5	0.718	NON_SYNONYMOUS_CODING CG42692
2R	13438202	2R_13438202_SNP [dm3] 2R_17550697_SNP [dm6]	T	C	9.392e^-5	0.718	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_sens
3L	19960669	3L_19960669_SNP [dm3] 3L_19967569_SNP [dm6]	A	G	9.402e^-5	0.718	INTRON Ac76E
3R	19776122	3R_19776122_SNP [dm3] 3R_23950400_SNP [dm6]	C	T	9.413e^-5	0.718	INTERGENIC
3L	8672946	3L_8672946_SNP [dm3] 3L_8679846_SNP [dm6]	A	T	9.413e^-5	0.718	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	9154842	3L_9154842_SNP [dm3] 3L_9161742_SNP [dm6]	C	T	9.463e^-5	0.718	INTRON Rdl
X	12518599	X_12518599_DEL [dm3] X_12624566_DEL [dm6]	TG	T	9.503e^-5	0.718	INTRON CG15728
3R	21729406	3R_21729406_SNP [dm3] 3R_25903684_SNP [dm6]	A	T	9.530e^-5	0.718	INTRON CR43259 & 1 other
3R	2405360	3R_2405360_SNP [dm3] 3R_6579638_SNP [dm6]	A	G	9.662e^-5	0.718	INTRON dpr11
3L	2694678	3L_2694678_SNP [dm3] 3L_2694678_SNP [dm6]	T	A	9.666e^-5	0.718	INTRON Fife
3L	2694684	3L_2694684_SNP [dm3] 3L_2694684_SNP [dm6]	T	G	9.666e^-5	0.718	INTRON Fife
2R	13348330	2R_13348330_SNP [dm3] 2R_17460825_SNP [dm6]	A	G	9.723e^-5	0.718	INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	13349916	2R_13349916_SNP [dm3] 2R_17462411_SNP [dm6]	C	G	9.804e^-5	0.718	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13510612	3L_13510612_SNP [dm3] 3L_13517512_SNP [dm6]	C	T	9.821e^-5	0.718	NON_SYNONYMOUS_CODING CG10710	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9189335	2L_9189335_SNP [dm3] 2L_9189335_SNP [dm6]	A	G	9.908e^-5	0.718	INTRON tai
3R	12566375	3R_12566375_SNP [dm3] 3R_16740653_SNP [dm6]	G	C	9.928e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
3L	22601865	3L_22601865_SNP [dm3] 3L_22608765_SNP [dm6]	G	A	9.942e^-5	0.718	INTRON CG14459
2R	13349374	2R_13349374_SNP [dm3] 2R_17461869_SNP [dm6]	T	C	9.949e^-5	0.718	INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24607383	3R_24607383_SNP [dm3] 3R_28781661_SNP [dm6]	A	G	1.002e^-4	0.718	INTERGENIC
3R	3541923	3R_3541923_INS [dm3] 3R_7716201_INS [dm6]	C	ATGA	1.008e^-4	0.718	INTERGENIC
3L	2655458	3L_2655458_SNP [dm3] 3L_2655458_SNP [dm6]	T	C	1.011e^-4	0.718	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3R	8358365	3R_8358365_SNP [dm3] 3R_12532643_SNP [dm6]	G	C	1.027e^-4	0.718	INTRON Octbeta3R
2R	11471261	2R_11471261_SNP [dm3] 2R_15583756_SNP [dm6]	G	A	1.033e^-4	0.718	INTERGENIC
3R	2140173	3R_2140173_SNP [dm3] 3R_6314451_SNP [dm6]	A	G	1.039e^-4	0.718	UPSTREAM Osi17 INTRON Osi17
2L	13154214	2L_13154214_SNP [dm3] 2L_13154214_SNP [dm6]	G	T	1.040e^-4	0.718	INTERGENIC
3R	23512652	3R_23512652_DEL [dm3] 3R_27686930_DEL [dm6]	CTTC	C	1.048e^-4	0.718	SPLICE_SITE_REGION CG31055 INTRON CG12880 & 1 other	TF binding site mE1_TFBS_chinmo
3L	12066979	3L_12066979_SNP [dm3] 3L_12073879_SNP [dm6]	G	A	1.054e^-4	0.718	INTRON Sema-5c
2L	12226662	2L_12226662_INS [dm3] 2L_12226662_INS [dm6]	G	AA	1.060e^-4	0.718	INTRON aret
3R	23000281	3R_23000281_SNP [dm3] 3R_27174559_SNP [dm6]	A	T	1.064e^-4	0.718	SPLICE_SITE_REGION Ser INTRON Ser	TF binding site mE1_TFBS_cad
3R	17682885	3R_17682885_SNP [dm3] 3R_21857163_SNP [dm6]	A	T	1.066e^-4	0.718	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	12034576	2L_12034576_SNP [dm3] 2L_12034576_SNP [dm6]	C	T	1.067e^-4	0.718	SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut	TF binding site mE1_TFBS_chinmo
3L	21470036	3L_21470036_SNP [dm3] 3L_21476936_SNP [dm6]	T	C	1.072e^-4	0.718	UPSTREAM croc INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	2219719	3R_2219719_SNP [dm3] 3R_6393997_SNP [dm6]	G	C	1.074e^-4	0.718	INTRON Dmtn
3L	14122278	3L_14122278_SNP [dm3] 3L_14129178_SNP [dm6]	C	T	1.078e^-4	0.718	INTRON Sox21b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3517989	X_3517989_SNP [dm3] X_3623956_SNP [dm6]	T	A	1.085e^-4	0.718	INTRON AstA-R1
2R	6850138	2R_6850138_INS [dm3] 2R_10962633_INS [dm6]	G	GG	1.099e^-4	0.718	INTERGENIC
3R	23558732	3R_23558732_SNP [dm3] 3R_27733010_SNP [dm6]	C	A	1.102e^-4	0.718	INTERGENIC
3R	12469308	3R_12469308_SNP [dm3] 3R_16643586_SNP [dm6]	A	C	1.102e^-4	0.718	UPSTREAM CG10326 DOWNSTREAM nonA-l INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	19512034	3L_19512034_SNP [dm3] 3L_19518934_SNP [dm6]	G	T	1.110e^-4	0.718	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3L	12705358	3L_12705358_INS [dm3] 3L_12712258_INS [dm6]	C	CACT	1.122e^-4	0.718	INTERGENIC
3R	17919382	3R_17919382_SNP [dm3] 3R_22093660_SNP [dm6]	T	C	1.127e^-4	0.718	INTRON CG5778	TF binding site mE1_TFBS_run
3L	19512027	3L_19512027_SNP [dm3] 3L_19518927_SNP [dm6]	G	A	1.131e^-4	0.718	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3R	1957864	3R_1957864_SNP [dm3] 3R_6132142_SNP [dm6]	T	C	1.139e^-4	0.718	INTERGENIC
3R	25818009	3R_25818009_SNP [dm3] 3R_29992287_SNP [dm6]	G	T	1.141e^-4	0.718	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	19769758	3L_19769758_INS [dm3] 3L_19776658_INS [dm6]	T	TC	1.143e^-4	0.718	INTRON CG42637 & 1 other
2L	3749830	2L_3749830_SNP [dm3] 2L_3749830_SNP [dm6]	C	T	1.144e^-4	0.718	SYNONYMOUS_CODING CG10019
3L	2198677	3L_2198677_SNP [dm3] 3L_2198677_SNP [dm6]	C	T	1.150e^-4	0.718	DOWNSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8231349	3R_8231349_SNP [dm3] 3R_12405627_SNP [dm6]	T	C	1.154e^-4	0.718	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2714565	3R_2714565_SNP [dm3] 3R_6888843_SNP [dm6]	T	A	1.154e^-4	0.718	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26512811	3R_26512811_SNP [dm3] 3R_30687089_SNP [dm6]	C	A	1.158e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6396925	3L_6396925_SNP [dm3] 3L_6403825_SNP [dm6]	A	T	1.159e^-4	0.718	INTRON CG42747
2L	13101374	2L_13101374_SNP [dm3] 2L_13101374_SNP [dm6]	C	T	1.174e^-4	0.718	INTERGENIC
3R	8212109	3R_8212109_SNP [dm3] 3R_12386387_SNP [dm6]	T	C	1.175e^-4	0.718	NON_SYNONYMOUS_CODING CG34402 UPSTREAM CG33098 DOWNSTREAM GstD11	TF binding site mE1_TFBS_chinmo
3L	6570959	3L_6570959_SNP [dm3] 3L_6577859_SNP [dm6]	G	C	1.175e^-4	0.718	INTRON CG18769 & 1 other
3R	8051466	3R_8051466_SNP [dm3] 3R_12225744_SNP [dm6]	A	G	1.176e^-4	0.718	SYNONYMOUS_CODING CG12256 UPSTREAM CG17404 EXON CR43477	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8349994	3R_8349994_SNP [dm3] 3R_12524272_SNP [dm6]	C	A	1.180e^-4	0.718	INTRON Octbeta3R
X	3169107	X_3169107_SNP [dm3] X_3275074_SNP [dm6]	G	A	1.184e^-4	0.718	INTRON dnc
3R	8223796	3R_8223796_INS [dm3] 3R_12398074_INS [dm6]	T	TA	1.185e^-4	0.718	DOWNSTREAM lig3 INTRON CG34402 & 1 other
3L	2694699	3L_2694699_SNP [dm3] 3L_2694699_SNP [dm6]	A	T	1.188e^-4	0.718	INTRON Fife
3L	22580970	3L_22580970_SNP [dm3] 3L_22587870_SNP [dm6]	A	C	1.189e^-4	0.718	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	13229823	3R_13229823_SNP [dm3] 3R_17404101_SNP [dm6]	A	T	1.189e^-4	0.718	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
X	13977683	X_13977683_SNP [dm3] X_14083650_SNP [dm6]	G	T	1.191e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2694707	3L_2694707_SNP [dm3] 3L_2694707_SNP [dm6]	G	T	1.191e^-4	0.718	INTRON Fife
3R	8067720	3R_8067720_SNP [dm3] 3R_12241998_SNP [dm6]	C	A	1.194e^-4	0.718	INTERGENIC
3R	10034942	3R_10034942_SNP [dm3] 3R_14209220_SNP [dm6]	A	C	1.196e^-4	0.718	INTRON Dop1R1
3R	19215740	3R_19215740_SNP [dm3] 3R_23390018_SNP [dm6]	T	C	1.197e^-4	0.718	UPSTREAM CR43387 INTERGENIC
3R	18705710	3R_18705710_SNP [dm3] 3R_22879988_SNP [dm6]	T	A	1.198e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12893217	3L_12893217_SNP [dm3] 3L_12900117_SNP [dm6]	A	T	1.202e^-4	0.718	INTERGENIC
3L	7924463	3L_7924463_SNP [dm3] 3L_7931363_SNP [dm6]	G	T	1.203e^-4	0.718	INTRON syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4074467	2L_4074467_SNP [dm3] 2L_4074467_SNP [dm6]	T	C	1.204e^-4	0.718	INTRON ed EXON CR44984
X	3137081	X_3137081_SNP [dm3] X_3243048_SNP [dm6]	G	T	1.205e^-4	0.718	UPSTREAM ng3 DOWNSTREAM ng1 & 1 other INTRON dnc
X	13959390	X_13959390_SNP [dm3] X_14065357_SNP [dm6]	C	T	1.213e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13959391	X_13959391_SNP [dm3] X_14065358_SNP [dm6]	A	T	1.213e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5018365	3R_5018365_DEL [dm3] 3R_9192643_DEL [dm6]	TGCAC	T	1.214e^-4	0.718	INTRON pum
3L	19962531	3L_19962531_SNP [dm3] 3L_19969431_SNP [dm6]	G	A	1.215e^-4	0.718	INTRON Ac76E
3L	13500747	3L_13500747_SNP [dm3] 3L_13507647_SNP [dm6]	C	G	1.215e^-4	0.718	SYNONYMOUS_CODING Spt20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13154246	2L_13154246_DEL [dm3] 2L_13154246_DEL [dm6]	ATACTGCATTGA...	A	1.217e^-4	0.718	INTERGENIC
X	14455777	X_14455777_SNP [dm3] X_14561744_SNP [dm6]	A	G	1.222e^-4	0.718	INTERGENIC
X	3137086	X_3137086_SNP [dm3] X_3243053_SNP [dm6]	A	T	1.223e^-4	0.718	UPSTREAM ng3 DOWNSTREAM ng1 & 1 other INTRON dnc
3R	9676783	3R_9676783_DEL [dm3] 3R_13851061_DEL [dm6]	GGAAAATTAAGCTATGCGAA...	CCC	1.236e^-4	0.718	INTERGENIC
2R	14222237	2R_14222237_SNP [dm3] 2R_18334732_SNP [dm6]	G	A	1.241e^-4	0.718	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10770972	2R_10770972_SNP [dm3] 2R_14883467_SNP [dm6]	C	T	1.246e^-4	0.718	NON_SYNONYMOUS_CODING Cyp6a20
3L	4371790	3L_4371790_INS [dm3] 3L_4371790_INS [dm6]	A	AT	1.250e^-4	0.718	UTR_5_PRIME DopEcR	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	13959358	X_13959358_SNP [dm3] X_14065325_SNP [dm6]	A	G	1.255e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18932255	2R_18932255_SNP [dm3] 2R_23044732_SNP [dm6]	C	A	1.266e^-4	0.718	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	903194	3L_903194_SNP [dm3] 3L_903194_SNP [dm6]	C	A	1.268e^-4	0.718	SYNONYMOUS_CODING CG13905	TF binding site mE1_TFBS_sens
3L	18247125	3L_18247125_SNP [dm3] 3L_18254025_SNP [dm6]	C	T	1.278e^-4	0.718	INTERGENIC
3L	5758937	3L_5758937_SNP [dm3] 3L_5765837_SNP [dm6]	G	T	1.290e^-4	0.718	UPSTREAM Txl & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	6305142	2R_6305142_INS [dm3] 2R_10417637_INS [dm6]	A	AGGTTGGACAAA...	1.290e^-4	0.718	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5332968	3L_5332968_SNP [dm3] 3L_5339868_SNP [dm6]	A	T	1.294e^-4	0.718	INTERGENIC
3L	6395626	3L_6395626_SNP [dm3] 3L_6402526_SNP [dm6]	A	T	1.297e^-4	0.718	INTRON CG42747
2L	16168488	2L_16168488_SNP [dm3] 2L_16168488_SNP [dm6]	A	G	1.298e^-4	0.718	UTR_5_PRIME Ca-alpha1D INTRON Ca-alpha1D
3R	13229981	3R_13229981_DEL [dm3] 3R_17404259_DEL [dm6]	TAAT	T	1.300e^-4	0.718	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
2R	6305286	2R_6305286_SNP [dm3] 2R_10417781_SNP [dm6]	C	T	1.301e^-4	0.718	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	17296864	3R_17296864_SNP [dm3] 3R_21471142_SNP [dm6]	T	C	1.303e^-4	0.718	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5234380	2R_5234380_SNP [dm3] 2R_9346875_SNP [dm6]	G	C	1.303e^-4	0.718	UTR_3_PRIME Or45a INTRON CG13954 & 1 other
3L	15846662	3L_15846662_SNP [dm3] 3L_15853562_SNP [dm6]	T	C	1.304e^-4	0.718	INTRON pHCl	TF binding site mE1_TFBS_kn
2L	3782663	2L_3782663_SNP [dm3] 2L_3782663_SNP [dm6]	C	A	1.305e^-4	0.718	SYNONYMOUS_CODING bowl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26505060	3R_26505060_SNP [dm3] 3R_30679338_SNP [dm6]	G	C	1.309e^-4	0.718	INTERGENIC
2R	7264227	2R_7264227_SNP [dm3] 2R_11376722_SNP [dm6]	T	A	1.315e^-4	0.718	SYNONYMOUS_CODING CG13203 DOWNSTREAM Tsp47F	TF binding site mE1_TFBS_chinmo
3L	16550224	3L_16550224_SNP [dm3] 3L_16557124_SNP [dm6]	T	C	1.316e^-4	0.718	SYNONYMOUS_CODING CG4229	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6305287	2R_6305287_SNP [dm3] 2R_10417782_SNP [dm6]	T	A	1.316e^-4	0.718	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	13977638	X_13977638_SNP [dm3] X_14083605_SNP [dm6]	C	A	1.317e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	7998787	3R_7998787_SNP [dm3] 3R_12173065_SNP [dm6]	T	C	1.320e^-4	0.718	INTERGENIC
2R	13438004	2R_13438004_SNP [dm3] 2R_17550499_SNP [dm6]	T	C	1.323e^-4	0.718	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_sens
3R	8265543	3R_8265543_SNP [dm3] 3R_12439821_SNP [dm6]	A	C	1.323e^-4	0.718	UPSTREAM CG17207 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	9438461	2L_9438461_SNP [dm3] 2L_9438461_SNP [dm6]	C	T	1.329e^-4	0.718	INTRON numb	TF binding site BDTNP1_TFBS_dl
2R	13350610	2R_13350610_SNP [dm3] 2R_17463105_SNP [dm6]	A	G	1.331e^-4	0.718	SYNONYMOUS_CODING CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	18327046	2R_18327046_SNP [dm3] 2R_22439541_SNP [dm6]	C	T	1.332e^-4	0.718	INTERGENIC
X	11150989	X_11150989_SNP [dm3] X_11256956_SNP [dm6]	T	C	1.338e^-4	0.718	INTRON CG44422
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	1.344e^-4	0.718	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
2L	7306148	2L_7306148_SNP [dm3] 2L_7306148_SNP [dm6]	G	A	1.346e^-4	0.718	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14514049	3L_14514049_SNP [dm3] 3L_14520949_SNP [dm6]	T	C	1.349e^-4	0.718	INTRON bbg & 1 other
2L	10460136	2L_10460136_SNP [dm3] 2L_10460136_SNP [dm6]	C	T	1.352e^-4	0.718	NON_SYNONYMOUS_CODING LM408
3R	4859257	3R_4859257_DEL [dm3] 3R_9033535_DEL [dm6]	CTGCT	C	1.356e^-4	0.718	UTR_5_PRIME neur INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	6361807	2L_6361807_SNP [dm3] 2L_6361807_SNP [dm6]	T	A	1.357e^-4	0.718	DOWNSTREAM CR44778 INTERGENIC
X	19427946	X_19427946_SNP [dm3] X_19533913_SNP [dm6]	G	A	1.361e^-4	0.718	INTRON CG32532	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14193734	2R_14193734_SNP [dm3] 2R_18306229_SNP [dm6]	G	A	1.363e^-4	0.718	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
3L	13500729	3L_13500729_SNP [dm3] 3L_13507629_SNP [dm6]	A	C	1.372e^-4	0.718	SYNONYMOUS_CODING Spt20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8224915	3R_8224915_SNP [dm3] 3R_12399193_SNP [dm6]	A	T	1.373e^-4	0.718	SYNONYMOUS_CODING lig3 UPSTREAM Cyp9f3Psi INTRON CG34402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16848078	2R_16848078_SNP [dm3] 2R_20960573_SNP [dm6]	C	T	1.375e^-4	0.718	SYNONYMOUS_CODING hbn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19123769	2R_19123769_SNP [dm3] 2R_23236246_SNP [dm6]	A	G	1.390e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	1.398e^-4	0.724	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2781599	3R_2781599_SNP [dm3] 3R_6955877_SNP [dm6]	T	G	1.398e^-4	0.724	INTRON Antp
3R	4885793	3R_4885793_SNP [dm3] 3R_9060071_SNP [dm6]	C	T	1.409e^-4	0.725	SYNONYMOUS_CODING Kdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8275376	3R_8275376_SNP [dm3] 3R_12449654_SNP [dm6]	C	T	1.411e^-4	0.725	SYNONYMOUS_CODING CG18549 DOWNSTREAM CG5538	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5758869	3L_5758869_SNP [dm3] 3L_5765769_SNP [dm6]	A	T	1.414e^-4	0.725	UPSTREAM Txl & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	7267790	2R_7267790_SNP [dm3] 2R_11380285_SNP [dm6]	T	C	1.415e^-4	0.725	DOWNSTREAM Sod3 INTERGENIC
3R	13229904	3R_13229904_SNP [dm3] 3R_17404182_SNP [dm6]	C	T	1.423e^-4	0.726	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
3L	2655094	3L_2655094_SNP [dm3] 3L_2655094_SNP [dm6]	C	A	1.424e^-4	0.726	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
2L	4896797	2L_4896797_SNP [dm3] 2L_4896797_SNP [dm6]	A	T	1.432e^-4	0.728	INTRON CG3036
3R	3553155	3R_3553155_SNP [dm3] 3R_7727433_SNP [dm6]	A	T	1.443e^-4	0.731	INTERGENIC
3L	2656061	3L_2656061_SNP [dm3] 3L_2656061_SNP [dm6]	C	T	1.452e^-4	0.733	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
2L	1387928	2L_1387928_SNP [dm3] 2L_1387928_SNP [dm6]	A	C	1.454e^-4	0.733	INTRON lea
3R	1777618	3R_1777618_SNP [dm3] 3R_5951896_SNP [dm6]	A	G	1.467e^-4	0.733	INTRON CG34113
3L	6396662	3L_6396662_SNP [dm3] 3L_6403562_SNP [dm6]	A	G	1.475e^-4	0.733	INTRON CG42747
3R	23371522	3R_23371522_SNP [dm3] 3R_27545800_SNP [dm6]	A	G	1.480e^-4	0.733	SYNONYMOUS_CODING Gr98c UPSTREAM Gr98d
3R	26705672	3R_26705672_SNP [dm3] 3R_30879950_SNP [dm6]	A	T	1.481e^-4	0.733	INTRON CG12071	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12855205	2R_12855205_INS [dm3] 2R_16967700_INS [dm6]	A	AA	1.488e^-4	0.733	UPSTREAM tRNA:G3:53E INTERGENIC
3L	19966820	3L_19966820_SNP [dm3] 3L_19973720_SNP [dm6]	C	T	1.490e^-4	0.733	SYNONYMOUS_CODING Ac76E
3L	967956	3L_967956_SNP [dm3] 3L_967956_SNP [dm6]	A	C	1.497e^-4	0.733	INTRON Glut1
3R	3541843	3R_3541843_SNP [dm3] 3R_7716121_SNP [dm6]	C	T	1.498e^-4	0.733	INTERGENIC
3R	13140483	3R_13140483_SNP [dm3] 3R_17314761_SNP [dm6]	G	C	1.500e^-4	0.733	INTERGENIC
2L	6702542	2L_6702542_SNP [dm3] 2L_6702542_SNP [dm6]	G	A	1.504e^-4	0.733	INTRON Tsp
3L	4493969	3L_4493969_SNP [dm3] 3L_4493969_SNP [dm6]	T	C	1.505e^-4	0.733	DOWNSTREAM CR44709 INTERGENIC
2L	17308401	2L_17308401_SNP [dm3] 2L_17308401_SNP [dm6]	C	T	1.507e^-4	0.733	INTERGENIC
3L	16549315	3L_16549315_INS [dm3] 3L_16556215_INS [dm6]	T	TGT	1.509e^-4	0.733	UPSTREAM CG4229 INTERGENIC
3L	22601863	3L_22601863_SNP [dm3] 3L_22608763_SNP [dm6]	C	T	1.509e^-4	0.733	INTRON CG14459
2R	6305271	2R_6305271_SNP [dm3] 2R_10417766_SNP [dm6]	C	A	1.515e^-4	0.733	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14975552	3L_14975552_SNP [dm3] 3L_14982452_SNP [dm6]	T	C	1.524e^-4	0.733	UPSTREAM CG5114 DOWNSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6986972	2R_6986972_SNP [dm3] 2R_11099467_SNP [dm6]	A	G	1.544e^-4	0.733	INTRON luna
3R	8255925	3R_8255925_SNP [dm3] 3R_12430203_SNP [dm6]	T	G	1.550e^-4	0.733	SYNONYMOUS_CODING CG5245 UPSTREAM CG5641	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	16934783	3R_16934783_SNP [dm3] 3R_21109061_SNP [dm6]	C	A	1.553e^-4	0.733	INTRON rtet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3265573	X_3265573_SNP [dm3] X_3371540_SNP [dm6]	A	C	1.556e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6396908	3L_6396908_SNP [dm3] 3L_6403808_SNP [dm6]	T	A	1.557e^-4	0.733	INTRON CG42747
3R	13916678	3R_13916678_SNP [dm3] 3R_18090956_SNP [dm6]	T	C	1.565e^-4	0.733	UTR_5_PRIME sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1707808	3R_1707808_SNP [dm3] 3R_5882086_SNP [dm6]	C	T	1.568e^-4	0.733	INTRON CG34113	TF binding site mE1_TFBS_cad
2L	5695699	2L_5695699_SNP [dm3] 2L_5695699_SNP [dm6]	A	G	1.571e^-4	0.733	INTERGENIC
3L	15841774	3L_15841774_SNP [dm3] 3L_15848674_SNP [dm6]	T	C	1.572e^-4	0.733	UTR_3_PRIME pHCl	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	20367863	2R_20367863_SNP [dm3] 2R_24480340_SNP [dm6]	A	G	1.577e^-4	0.733	INTRON CG13579
2R	18328319	2R_18328319_SNP [dm3] 2R_22440814_SNP [dm6]	T	C	1.585e^-4	0.733	INTERGENIC
X	19389110	X_19389110_SNP [dm3] X_19495077_SNP [dm6]	G	A	1.589e^-4	0.733	UPSTREAM CG12204 & 3 others DOWNSTREAM CR44340 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_kn
3R	2405737	3R_2405737_SNP [dm3] 3R_6580015_SNP [dm6]	G	A	1.590e^-4	0.733	UPSTREAM CG2336 INTRON dpr11
3L	1376291	3L_1376291_SNP [dm3] 3L_1376291_SNP [dm6]	C	T	1.597e^-4	0.733	INTRON Ptp61F & 1 other
3R	16522330	3R_16522330_SNP [dm3] 3R_20696608_SNP [dm6]	G	T	1.598e^-4	0.733	INTRON Oamb
2L	15051741	2L_15051741_SNP [dm3] 2L_15051741_SNP [dm6]	C	A	1.601e^-4	0.733	INTRON ck	regulatory region REDfly_CRMs
2L	14855888	2L_14855888_SNP [dm3] 2L_14855888_SNP [dm6]	A	C	1.602e^-4	0.733	INTERGENIC
3L	11039144	3L_11039144_SNP [dm3] 3L_11046044_SNP [dm6]	T	C	1.605e^-4	0.733	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	4494005	3L_4494005_SNP [dm3] 3L_4494005_SNP [dm6]	A	C	1.607e^-4	0.733	DOWNSTREAM CR44709 INTERGENIC
2R	14168901	2R_14168901_SNP [dm3] 2R_18281396_SNP [dm6]	A	G	1.608e^-4	0.733	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16522461	3R_16522461_SNP [dm3] 3R_20696739_SNP [dm6]	C	T	1.612e^-4	0.733	INTRON Oamb
3R	12266215	3R_12266215_SNP [dm3] 3R_16440493_SNP [dm6]	G	A	1.614e^-4	0.733	SYNONYMOUS_CODING ema
2R	6305134	2R_6305134_SNP [dm3] 2R_10417629_SNP [dm6]	A	C	1.615e^-4	0.733	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	9745078	X_9745078_INS [dm3] X_9851045_INS [dm6]	A	AGACAA	1.616e^-4	0.733	UTR_3_PRIME CG32698
3R	8265539	3R_8265539_SNP [dm3] 3R_12439817_SNP [dm6]	G	T	1.629e^-4	0.733	UPSTREAM CG17207 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	9981571	3R_9981571_SNP [dm3] 3R_14155849_SNP [dm6]	A	T	1.631e^-4	0.733	SYNONYMOUS_CODING CG31533	TF binding site mE1_TFBS_sens
3R	26512832	3R_26512832_SNP [dm3] 3R_30687110_SNP [dm6]	T	C	1.633e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17164532	3L_17164532_SNP [dm3] 3L_17171432_SNP [dm6]	A	G	1.635e^-4	0.733	INTRON Rbp6
X	14453863	X_14453863_SNP [dm3] X_14559830_SNP [dm6]	G	A	1.636e^-4	0.733	INTERGENIC
2L	1691305	2L_1691305_SNP [dm3] 2L_1691305_SNP [dm6]	A	T	1.645e^-4	0.733	INTRON chinmo
X	6336507	X_6336507_INS [dm3] X_6442474_INS [dm6]	T	TAT	1.653e^-4	0.733	INTRON CG42340
3L	6012222	3L_6012222_SNP [dm3] 3L_6019122_SNP [dm6]	T	G	1.657e^-4	0.733	START_GAINED PVRAP UTR_5_PRIME PVRAP
3L	16562255	3L_16562255_SNP [dm3] 3L_16569155_SNP [dm6]	G	A	1.661e^-4	0.733	INTRON Mipp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	810769	3R_810769_SNP [dm3] 3R_4985047_SNP [dm6]	C	T	1.666e^-4	0.733	UPSTREAM CG14662 EXON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	8061910	X_8061910_SNP [dm3] X_8167877_SNP [dm6]	T	C	1.670e^-4	0.733	NON_SYNONYMOUS_CODING CG2278 UTR_3_PRIME CG2278	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	9654605	3R_9654605_SNP [dm3] 3R_13828883_SNP [dm6]	G	A	1.671e^-4	0.733	UPSTREAM Mst87F DOWNSTREAM CR43300 INTERGENIC
3L	16895371	3L_16895371_SNP [dm3] 3L_16902271_SNP [dm6]	C	T	1.686e^-4	0.733	INTRON Lmpt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	8164559	3R_8164559_SNP [dm3] 3R_12338837_SNP [dm6]	T	C	1.691e^-4	0.733	INTRON CR44941
X	13977697	X_13977697_SNP [dm3] X_14083664_SNP [dm6]	C	G	1.704e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	4117063	X_4117063_SNP [dm3] X_4223030_SNP [dm6]	T	C	1.708e^-4	0.733	SYNONYMOUS_CODING CG15570
3L	17181050	3L_17181050_SNP [dm3] 3L_17187950_SNP [dm6]	G	A	1.712e^-4	0.733	INTRON Rbp6
X	7991724	X_7991724_SNP [dm3] X_8097691_SNP [dm6]	A	G	1.713e^-4	0.733	SYNONYMOUS_CODING CG2258
2L	16698790	2L_16698790_SNP [dm3] 2L_16698790_SNP [dm6]	T	C	1.720e^-4	0.733	DOWNSTREAM mir-9c & 3 others INTRON grp EXON mir-9b
3R	2876674	3R_2876674_SNP [dm3] 3R_7050952_SNP [dm6]	A	G	1.724e^-4	0.733	INTERGENIC
3L	7247554	3L_7247554_SNP [dm3] 3L_7254454_SNP [dm6]	A	G	1.734e^-4	0.733	INTRON CG14830
2R	7295073	2R_7295073_SNP [dm3] 2R_11407568_SNP [dm6]	A	G	1.736e^-4	0.733	NON_SYNONYMOUS_CODING CG7759
3R	17908273	3R_17908273_SNP [dm3] 3R_22082551_SNP [dm6]	C	T	1.741e^-4	0.733	INTRON CG13408
3L	9659924	3L_9659924_SNP [dm3] 3L_9666824_SNP [dm6]	T	A	1.747e^-4	0.733	INTRON fry
X	13977713	X_13977713_SNP [dm3] X_14083680_SNP [dm6]	C	A	1.747e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	17908271	3R_17908271_SNP [dm3] 3R_22082549_SNP [dm6]	T	A	1.750e^-4	0.733	INTRON CG13408
3L	8394667	3L_8394667_SNP [dm3] 3L_8401567_SNP [dm6]	C	G	1.751e^-4	0.733	SYNONYMOUS_CODING CG7120 DOWNSTREAM mkg-p & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14975116	3L_14975116_SNP [dm3] 3L_14982016_SNP [dm6]	T	A	1.751e^-4	0.733	SYNONYMOUS_CODING CG3349 UPSTREAM CG5114
3L	2655990	3L_2655990_SNP [dm3] 3L_2655990_SNP [dm6]	A	G	1.754e^-4	0.733	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3L	2656035	3L_2656035_SNP [dm3] 3L_2656035_SNP [dm6]	A	G	1.754e^-4	0.733	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3R	8235840	3R_8235840_SNP [dm3] 3R_12410118_SNP [dm6]	T	C	1.755e^-4	0.733	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	9677291	3R_9677291_SNP [dm3] 3R_13851569_SNP [dm6]	C	T	1.762e^-4	0.733	INTERGENIC
3L	6396128	3L_6396128_SNP [dm3] 3L_6403028_SNP [dm6]	G	A	1.765e^-4	0.733	INTRON CG42747
2R	7121645	2R_7121645_SNP [dm3] 2R_11234140_SNP [dm6]	A	G	1.767e^-4	0.733	SYNONYMOUS_CODING CG13228 UPSTREAM CG13218
3R	24604876	3R_24604876_SNP [dm3] 3R_28779154_SNP [dm6]	G	A	1.767e^-4	0.733	INTERGENIC
3R	25064115	3R_25064115_SNP [dm3] 3R_29238393_SNP [dm6]	C	T	1.774e^-4	0.733	DOWNSTREAM CG31427 INTRON CG11951
3L	1798784	3L_1798784_SNP [dm3] 3L_1798784_SNP [dm6]	A	T	1.775e^-4	0.733	UPSTREAM Patj DOWNSTREAM CG12020 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
2R	9122776	2R_9122776_SNP [dm3] 2R_13235271_SNP [dm6]	T	A	1.776e^-4	0.733	UTR_5_PRIME CG4670 UPSTREAM CG4676 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9137472	3L_9137472_SNP [dm3] 3L_9144372_SNP [dm6]	A	G	1.785e^-4	0.733	UTR_3_PRIME nwk UPSTREAM mir-4940 INTRON nwk	TF binding site mE1_TFBS_cad
3R	8221724	3R_8221724_SNP [dm3] 3R_12396002_SNP [dm6]	G	A	1.785e^-4	0.733	UPSTREAM CG10096 & 1 other DOWNSTREAM Cyp9f3Psi INTRON CG34402
2L	6701616	2L_6701616_SNP [dm3] 2L_6701616_SNP [dm6]	C	A	1.792e^-4	0.733	INTRON Tsp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	19652429	3R_19652429_DEL [dm3] 3R_23826707_DEL [dm6]	TAACT	T	1.793e^-4	0.733	UPSTREAM CR43285 DOWNSTREAM snRNA:U1:95Cc INTRON CG34355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7354741	X_7354741_SNP [dm3] X_7460708_SNP [dm6]	A	T	1.805e^-4	0.733	EXON CR44500
3R	2154002	3R_2154002_SNP [dm3] 3R_6328280_SNP [dm6]	T	C	1.813e^-4	0.733	DOWNSTREAM Osi17 INTERGENIC
2R	16140461	2R_16140461_SNP [dm3] 2R_20252956_SNP [dm6]	C	A	1.820e^-4	0.733	INTRON CG9864
X	8968331	X_8968331_SNP [dm3] X_9074298_SNP [dm6]	T	C	1.822e^-4	0.733	INTRON CG44325
3R	12183010	3R_12183010_SNP [dm3] 3R_16357288_SNP [dm6]	G	A	1.825e^-4	0.733	UPSTREAM CG10311 DOWNSTREAM CG17931 & 1 other INTERGENIC
3R	8282234	3R_8282234_SNP [dm3] 3R_12456512_SNP [dm6]	T	A	1.828e^-4	0.733	UPSTREAM trus DOWNSTREAM CG18549 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA
X	21099460	X_21099460_DEL [dm3] X_21228433_DEL [dm6]	GCGATGG	G	1.834e^-4	0.733	INTRON CG32521
3L	5919130	3L_5919130_SNP [dm3] 3L_5926030_SNP [dm6]	G	A	1.835e^-4	0.733	UPSTREAM Vap-33B INTRON Vap-33B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16458359	2L_16458359_SNP [dm3] 2L_16458359_SNP [dm6]	C	T	1.836e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs
3L	2101156	3L_2101156_SNP [dm3] 3L_2101156_SNP [dm6]	G	C	1.840e^-4	0.733	NON_SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24611021	3R_24611021_SNP [dm3] 3R_28785299_SNP [dm6]	C	A	1.840e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12620149	3L_12620149_SNP [dm3] 3L_12627049_SNP [dm6]	A	G	1.842e^-4	0.733	UPSTREAM CR32111 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	8289146	3R_8289146_SNP [dm3] 3R_12463424_SNP [dm6]	C	A	1.845e^-4	0.733	NON_SYNONYMOUS_CODING CG5608	TF binding site mE1_TFBS_inv
2R	13005186	2R_13005186_SNP [dm3] 2R_17117681_SNP [dm6]	T	C	1.851e^-4	0.733	DOWNSTREAM Amy-p INTERGENIC
X	17025893	X_17025893_SNP [dm3] X_17131860_SNP [dm6]	A	T	1.852e^-4	0.733	INTRON CG5004
2R	19504095	2R_19504095_SNP [dm3] 2R_23616572_SNP [dm6]	T	C	1.855e^-4	0.733	NON_SYNONYMOUS_CODING CG17664
3R	14593837	3R_14593837_SNP [dm3] 3R_18768115_SNP [dm6]	A	G	1.857e^-4	0.733	INTRON CG7720
3R	2405556	3R_2405556_SNP [dm3] 3R_6579834_SNP [dm6]	G	T	1.865e^-4	0.733	UPSTREAM CG2336 INTRON dpr11
2L	13643354	2L_13643354_SNP [dm3] 2L_13643354_SNP [dm6]	G	A	1.868e^-4	0.733	UPSTREAM ics DOWNSTREAM CR44726 INTERGENIC
3L	6590360	3L_6590360_SNP [dm3] 3L_6597260_SNP [dm6]	T	G	1.873e^-4	0.733	NON_SYNONYMOUS_CODING ndl
3R	25821908	3R_25821908_SNP [dm3] 3R_29996186_SNP [dm6]	T	A	1.878e^-4	0.733	NON_SYNONYMOUS_CODING Sas-6 UPSTREAM CG7903 DOWNSTREAM CG15525	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16863695	3R_16863695_SNP [dm3] 3R_21037973_SNP [dm6]	G	A	1.884e^-4	0.733	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	3564120	3R_3564120_SNP [dm3] 3R_7738398_SNP [dm6]	G	C	1.885e^-4	0.733	DOWNSTREAM CG43254 INTERGENIC
3R	10119234	3R_10119234_SNP [dm3] 3R_14293512_SNP [dm6]	T	G	1.888e^-4	0.733	INTRON CG12207
3L	17164601	3L_17164601_SNP [dm3] 3L_17171501_SNP [dm6]	A	G	1.892e^-4	0.733	INTRON Rbp6
3R	8226635	3R_8226635_SNP [dm3] 3R_12400913_SNP [dm6]	T	C	1.897e^-4	0.733	SYNONYMOUS_CODING lig3 INTRON CG34402	TF binding site mE1_TFBS_sens
X	20149961	X_20149961_SNP [dm3] X_20278935_SNP [dm6]	A	C	1.901e^-4	0.733	INTERGENIC
3R	3393136	3R_3393136_SNP [dm3] 3R_7567414_SNP [dm6]	G	A	1.903e^-4	0.733	INTERGENIC
3R	14960618	3R_14960618_SNP [dm3] 3R_19134896_SNP [dm6]	A	C	1.907e^-4	0.733	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3L	11890608	3L_11890608_SNP [dm3] 3L_11897508_SNP [dm6]	G	A	1.911e^-4	0.733	INTRON CG44837
3L	6570565	3L_6570565_SNP [dm3] 3L_6577465_SNP [dm6]	T	C	1.912e^-4	0.733	INTRON CG18769 & 1 other
3R	4244423	3R_4244423_SNP [dm3] 3R_8418701_SNP [dm6]	T	G	1.912e^-4	0.733	INTRON CG45263
3R	8223791	3R_8223791_DEL [dm3] 3R_12398069_DEL [dm6]	GTA	G	1.914e^-4	0.733	DOWNSTREAM lig3 INTRON CG34402 & 1 other
3L	2278039	3L_2278039_SNP [dm3] 3L_2278039_SNP [dm6]	A	C	1.914e^-4	0.733	DOWNSTREAM yellow-g2 INTERGENIC
3L	6945496	3L_6945496_SNP [dm3] 3L_6952396_SNP [dm6]	G	A	1.915e^-4	0.733	UTR_3_PRIME CG10077 INTRON CG10077
3R	21889969	3R_21889969_SNP [dm3] 3R_26064247_SNP [dm6]	T	C	1.918e^-4	0.733	INTERGENIC
3L	7087070	3L_7087070_SNP [dm3] 3L_7093970_SNP [dm6]	C	G	1.926e^-4	0.733	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13509546	3L_13509546_SNP [dm3] 3L_13516446_SNP [dm6]	C	T	1.927e^-4	0.733	UTR_3_PRIME CG10710 DOWNSTREAM Liprin-beta
3R	24518302	3R_24518302_SNP [dm3] 3R_28692580_SNP [dm6]	G	T	1.933e^-4	0.733	SYNONYMOUS_CODING CG9990	TF binding site mE1_TFBS_cad
X	3006827	X_3006827_SNP [dm3] X_3112794_SNP [dm6]	A	T	1.936e^-4	0.733	INTRON kirre
3L	15058719	3L_15058719_SNP [dm3] 3L_15065619_SNP [dm6]	C	A	1.936e^-4	0.733	UPSTREAM Sytbeta DOWNSTREAM cp309 INTERGENIC
X	7889424	X_7889424_SNP [dm3] X_7995391_SNP [dm6]	G	C	1.946e^-4	0.733	UPSTREAM Tbh INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24466529	3R_24466529_SNP [dm3] 3R_28640807_SNP [dm6]	C	G	1.949e^-4	0.733	DOWNSTREAM CG14062 INTERGENIC	TF binding site mE1_TFBS_cad
2R	20366332	2R_20366332_SNP [dm3] 2R_24478809_SNP [dm6]	C	A	1.956e^-4	0.733	INTRON CG13579
3L	14985946	3L_14985946_SNP [dm3] 3L_14992846_SNP [dm6]	C	A	1.962e^-4	0.733	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	20378008	2R_20378008_SNP [dm3] 2R_24490485_SNP [dm6]	T	A	1.973e^-4	0.733	UTR_3_PRIME CG13579
3L	18901731	3L_18901731_SNP [dm3] 3L_18908631_SNP [dm6]	A	G	1.978e^-4	0.733	SYNONYMOUS_CODING Ir75d UTR_3_PRIME CG14077 & 1 other	TF binding site mE1_TFBS_cad
2L	4534356	2L_4534356_SNP [dm3] 2L_4534356_SNP [dm6]	G	A	1.986e^-4	0.733	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16146332	3L_16146332_SNP [dm3] 3L_16153232_SNP [dm6]	C	T	1.994e^-4	0.733	INTRON CG5151
3R	21683721	3R_21683721_SNP [dm3] 3R_25857999_SNP [dm6]	T	C	1.997e^-4	0.733	INTRON CG5890
3L	22191771	3L_22191771_SNP [dm3] 3L_22198671_SNP [dm6]	A	G	2.002e^-4	0.733	INTRON olf413
X	17025894	X_17025894_SNP [dm3] X_17131861_SNP [dm6]	C	G	2.007e^-4	0.733	INTRON CG5004
3L	5931521	3L_5931521_SNP [dm3] 3L_5938421_SNP [dm6]	C	T	2.016e^-4	0.733	INTRON CG33993
3L	9302746	3L_9302746_SNP [dm3] 3L_9309646_SNP [dm6]	T	C	2.020e^-4	0.733	INTERGENIC
3R	24611011	3R_24611011_SNP [dm3] 3R_28785289_SNP [dm6]	C	T	2.020e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4493835	3L_4493835_SNP [dm3] 3L_4493835_SNP [dm6]	T	C	2.024e^-4	0.733	DOWNSTREAM CR44709 INTERGENIC
3L	9403286	3L_9403286_SNP [dm3] 3L_9410186_SNP [dm6]	A	T	2.028e^-4	0.733	UTR_5_PRIME CG4022 UPSTREAM CG3689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2415464	3R_2415464_INS [dm3] 3R_6589742_INS [dm6]	T	TA	2.030e^-4	0.733	INTRON dpr11
3L	10642157	3L_10642157_SNP [dm3] 3L_10649057_SNP [dm6]	G	A	2.035e^-4	0.733	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
3L	12893221	3L_12893221_SNP [dm3] 3L_12900121_SNP [dm6]	T	C	2.050e^-4	0.733	INTERGENIC
2L	14008210	2L_14008210_SNP [dm3] 2L_14008210_SNP [dm6]	A	G	2.051e^-4	0.733	NON_SYNONYMOUS_CODING CG42692
2L	3992178	2L_3992178_SNP [dm3] 2L_3992178_SNP [dm6]	A	G	2.056e^-4	0.733	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_Trl
2R	18369048	2R_18369048_SNP [dm3] 2R_22481543_SNP [dm6]	G	A	2.064e^-4	0.733	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18932280	2R_18932280_SNP [dm3] 2R_23044757_SNP [dm6]	T	G	2.068e^-4	0.733	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	658412	3L_658412_SNP [dm3] 3L_658412_SNP [dm6]	A	G	2.072e^-4	0.733	DOWNSTREAM Rev1 INTERGENIC
2R	19343780	2R_19343780_INS [dm3] 2R_23456257_INS [dm6]	C	CATC	2.072e^-4	0.733	UTR_5_PRIME CG43795	TF binding site mE1_TFBS_chinmo
2R	9128370	2R_9128370_SNP [dm3] 2R_13240865_SNP [dm6]	T	C	2.076e^-4	0.733	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8353044	3R_8353044_SNP [dm3] 3R_12527322_SNP [dm6]	C	T	2.086e^-4	0.733	INTRON Octbeta3R & 1 other
3L	6801255	3L_6801255_SNP [dm3] 3L_6808155_SNP [dm6]	G	A	2.096e^-4	0.733	INTERGENIC
X	20141116	X_20141116_SNP [dm3] X_20270090_SNP [dm6]	G	C	2.097e^-4	0.733	UPSTREAM Inx6 INTERGENIC
3L	12549675	3L_12549675_SNP [dm3] 3L_12556575_SNP [dm6]	A	T	2.108e^-4	0.733	INTRON sowah
X	19388905	X_19388905_SNP [dm3] X_19494872_SNP [dm6]	G	A	2.109e^-4	0.733	UPSTREAM CG12204 & 2 others DOWNSTREAM CR44340 INTRON ksh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23620849	3R_23620849_SNP [dm3] 3R_27795127_SNP [dm6]	G	A	2.115e^-4	0.733	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6660111	2R_6660111_SNP [dm3] 2R_10772606_SNP [dm6]	C	T	2.120e^-4	0.733	INTRON CG33144
X	19027731	X_19027731_SNP [dm3] X_19133698_SNP [dm6]	A	T	2.123e^-4	0.733	DOWNSTREAM CR45711 INTERGENIC
X	6544732	X_6544732_SNP [dm3] X_6650699_SNP [dm6]	A	G	2.124e^-4	0.733	UTR_3_PRIME pigs	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	2.127e^-4	0.733	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
X	3089562	X_3089562_SNP [dm3] X_3195529_SNP [dm6]	G	A	2.128e^-4	0.733	INTRON dnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3006822	X_3006822_SNP [dm3] X_3112789_SNP [dm6]	C	T	2.131e^-4	0.733	INTRON kirre
2R	18369046	2R_18369046_SNP [dm3] 2R_22481541_SNP [dm6]	G	C	2.139e^-4	0.733	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14363647	2L_14363647_SNP [dm3] 2L_14363647_SNP [dm6]	A	G	2.144e^-4	0.733	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4393836	3L_4393836_SNP [dm3] 3L_4393836_SNP [dm6]	A	T	2.149e^-4	0.733	INTRON slow
3L	4393834	3L_4393834_SNP [dm3] 3L_4393834_SNP [dm6]	C	T	2.151e^-4	0.733	INTRON slow
2R	19185488	2R_19185488_SNP [dm3] 2R_23297965_SNP [dm6]	T	C	2.152e^-4	0.733	INTERGENIC
2R	14193012	2R_14193012_SNP [dm3] 2R_18305507_SNP [dm6]	C	T	2.156e^-4	0.733	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	12273111	2R_12273111_SNP [dm3] 2R_16385606_SNP [dm6]	T	C	2.157e^-4	0.733	UTR_3_PRIME CG43187 UPSTREAM Sema-2b
X	14518172	X_14518172_SNP [dm3] X_14624139_SNP [dm6]	A	T	2.167e^-4	0.733	INTRON NetA
X	3812954	X_3812954_SNP [dm3] X_3918921_SNP [dm6]	T	C	2.169e^-4	0.733	INTRON CG42541
X	11534543	X_11534543_SNP [dm3] X_11640510_SNP [dm6]	C	A	2.169e^-4	0.733	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl
3L	13374266	3L_13374266_SNP [dm3] 3L_13381166_SNP [dm6]	C	G	2.170e^-4	0.733	SYNONYMOUS_CODING CG14107 DOWNSTREAM CG14111	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15249616	3L_15249616_MNP [dm3] 3L_15256516_MNP [dm6]	CAT	TTG	2.175e^-4	0.733	INTERGENIC
2L	13643649	2L_13643649_SNP [dm3] 2L_13643649_SNP [dm6]	C	T	2.178e^-4	0.733	DOWNSTREAM CR44726 INTERGENIC
3L	15058720	3L_15058720_SNP [dm3] 3L_15065620_SNP [dm6]	C	A	2.181e^-4	0.733	UPSTREAM Sytbeta DOWNSTREAM cp309 INTERGENIC
3R	14960689	3R_14960689_SNP [dm3] 3R_19134967_SNP [dm6]	G	A	2.185e^-4	0.733	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2R	17163223	2R_17163223_SNP [dm3] 2R_21275718_SNP [dm6]	C	T	2.187e^-4	0.733	INTRON Rgk3
X	887659	X_887659_SNP [dm3] X_993626_SNP [dm6]	C	T	2.187e^-4	0.733	INTERGENIC
3L	2200836	3L_2200836_SNP [dm3] 3L_2200836_SNP [dm6]	T	A	2.195e^-4	0.733	INTERGENIC
X	20009074	X_20009074_DEL [dm3] X_20115041_DEL [dm6]	GTACAACGG	G	2.198e^-4	0.733	INTERGENIC
2R	19131309	2R_19131309_SNP [dm3] 2R_23243786_SNP [dm6]	C	A	2.202e^-4	0.733	DOWNSTREAM yip3 INTERGENIC
2L	6374125	2L_6374125_SNP [dm3] 2L_6374125_SNP [dm6]	T	C	2.202e^-4	0.733	SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3504863	3R_3504863_SNP [dm3] 3R_7679141_SNP [dm6]	T	G	2.206e^-4	0.733	INTRON Nlg1
3R	16853866	3R_16853866_SNP [dm3] 3R_21028144_SNP [dm6]	G	C	2.208e^-4	0.733	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
3R	26504788	3R_26504788_SNP [dm3] 3R_30679066_SNP [dm6]	T	A	2.210e^-4	0.733	INTERGENIC
3R	22406392	3R_22406392_SNP [dm3] 3R_26580670_SNP [dm6]	T	G	2.224e^-4	0.733	INTRON scrib	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6305341	2R_6305341_SNP [dm3] 2R_10417836_SNP [dm6]	C	G	2.226e^-4	0.733	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	4565609	3L_4565609_SNP [dm3] 3L_4565609_SNP [dm6]	A	T	2.236e^-4	0.733	INTRON CG42540	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10853108	X_10853108_SNP [dm3] X_10959075_SNP [dm6]	G	A	2.250e^-4	0.733	INTRON Myo10A
X	13230209	X_13230209_SNP [dm3] X_13336176_SNP [dm6]	T	G	2.251e^-4	0.733	SYNONYMOUS_CODING RpS15Aa	TF binding site mE1_TFBS_sens
2R	9592749	2R_9592749_SNP [dm3] 2R_13705244_SNP [dm6]	G	A	2.254e^-4	0.733	INTRON fas
3R	14427339	3R_14427339_SNP [dm3] 3R_18601617_SNP [dm6]	T	C	2.255e^-4	0.733	INTRON qin & 1 other
3R	10998050	3R_10998050_SNP [dm3] 3R_15172328_SNP [dm6]	T	C	2.258e^-4	0.733	DOWNSTREAM Mf INTRON Mf & 1 other
2R	8634280	2R_8634280_SNP [dm3] 2R_12746775_SNP [dm6]	C	G	2.266e^-4	0.733	INTRON CG42663	TF binding site mE1_TFBS_cad
3R	19651325	3R_19651325_SNP [dm3] 3R_23825603_SNP [dm6]	A	T	2.272e^-4	0.733	UPSTREAM snRNA:U1:95Cc INTRON CG34355 EXON CR43285	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	2852983	3R_2852983_SNP [dm3] 3R_7027261_SNP [dm6]	G	A	2.274e^-4	0.733	INTERGENIC
3R	17908839	3R_17908839_SNP [dm3] 3R_22083117_SNP [dm6]	G	T	2.282e^-4	0.733	SYNONYMOUS_CODING CG13408
2R	13001518	2R_13001518_SNP [dm3] 2R_17114013_SNP [dm6]	A	G	2.286e^-4	0.733	SYNONYMOUS_CODING CG15611	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8093310	X_8093310_SNP [dm3] X_8199277_SNP [dm6]	G	T	2.289e^-4	0.733	INTRON sdt
3L	6073059	3L_6073059_SNP [dm3] 3L_6079959_SNP [dm6]	A	C	2.297e^-4	0.733	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	754261	3L_754261_SNP [dm3] 3L_754261_SNP [dm6]	G	T	2.298e^-4	0.733	DOWNSTREAM emc INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4393832	3L_4393832_SNP [dm3] 3L_4393832_SNP [dm6]	C	T	2.301e^-4	0.733	INTRON slow
2L	4631806	2L_4631806_SNP [dm3] 2L_4631806_SNP [dm6]	G	A	2.303e^-4	0.733	INTERGENIC
2L	1190108	2L_1190108_DEL [dm3] 2L_1190108_DEL [dm6]	AA	A	2.303e^-4	0.733	INTRON CG5001
3L	4797099	3L_4797099_SNP [dm3] 3L_4797099_SNP [dm6]	G	A	2.309e^-4	0.733	DOWNSTREAM RhoGEF64C INTERGENIC
3L	6490417	3L_6490417_SNP [dm3] 3L_6497317_SNP [dm6]	T	C	2.311e^-4	0.733	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
2R	13340579	2R_13340579_DEL [dm3] 2R_17453074_DEL [dm6]	TATCACATA	G	2.317e^-4	0.733	UPSTREAM CG10764 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12353994	3L_12353994_SNP [dm3] 3L_12360894_SNP [dm6]	C	T	2.320e^-4	0.733	INTERGENIC
2L	6804590	2L_6804590_SNP [dm3] 2L_6804590_SNP [dm6]	G	A	2.322e^-4	0.733	UTR_3_PRIME CG17375 DOWNSTREAM CG17375 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6395564	3L_6395564_SNP [dm3] 3L_6402464_SNP [dm6]	G	A	2.324e^-4	0.733	INTRON CG42747
3R	7768218	3R_7768218_SNP [dm3] 3R_11942496_SNP [dm6]	A	C	2.327e^-4	0.733	INTRON Cad87A
3L	19665307	3L_19665307_SNP [dm3] 3L_19672207_SNP [dm6]	C	T	2.333e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14960612	3R_14960612_SNP [dm3] 3R_19134890_SNP [dm6]	C	T	2.350e^-4	0.733	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2L	10102955	2L_10102955_SNP [dm3] 2L_10102955_SNP [dm6]	C	T	2.356e^-4	0.733	INTRON CG44153 & 1 other
2R	7121606	2R_7121606_SNP [dm3] 2R_11234101_SNP [dm6]	C	T	2.358e^-4	0.733	SYNONYMOUS_CODING CG13228 UPSTREAM CG13218
2L	12398895	2L_12398895_SNP [dm3] 2L_12398895_SNP [dm6]	T	C	2.359e^-4	0.733	SYNONYMOUS_CODING Pkd2
3L	13255579	3L_13255579_SNP [dm3] 3L_13262479_SNP [dm6]	A	T	2.362e^-4	0.733	INTRON caps
2R	17143620	2R_17143620_SNP [dm3] 2R_21256115_SNP [dm6]	A	G	2.365e^-4	0.733	UTR_5_PRIME Rgk3
2R	18329138	2R_18329138_SNP [dm3] 2R_22441633_SNP [dm6]	A	C	2.366e^-4	0.733	INTERGENIC
2L	5695712	2L_5695712_SNP [dm3] 2L_5695712_SNP [dm6]	A	G	2.367e^-4	0.733	INTERGENIC
2L	5695716	2L_5695716_SNP [dm3] 2L_5695716_SNP [dm6]	C	T	2.367e^-4	0.733	INTERGENIC
3L	9017868	3L_9017868_SNP [dm3] 3L_9024768_SNP [dm6]	T	A	2.368e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15594544	3R_15594544_SNP [dm3] 3R_19768822_SNP [dm6]	G	C	2.370e^-4	0.733	UTR_3_PRIME GluClalpha INTRON GluClalpha
3L	3903216	3L_3903216_SNP [dm3] 3L_3903216_SNP [dm6]	A	T	2.380e^-4	0.733	UPSTREAM Sc2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5568953	3L_5568953_DEL [dm3] 3L_5575853_DEL [dm6]	CGC	C	2.385e^-4	0.733	UPSTREAM Msr-110 INTRON Msr-110
3R	2799335	3R_2799335_SNP [dm3] 3R_6973613_SNP [dm6]	G	A	2.388e^-4	0.733	INTRON Antp	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	10338257	3L_10338257_SNP [dm3] 3L_10345157_SNP [dm6]	T	C	2.390e^-4	0.733	INTERGENIC
2L	7615834	2L_7615834_SNP [dm3] 2L_7615834_SNP [dm6]	C	A	2.391e^-4	0.733	NON_SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
2L	7306144	2L_7306144_SNP [dm3] 2L_7306144_SNP [dm6]	C	A	2.395e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2694668	3L_2694668_SNP [dm3] 3L_2694668_SNP [dm6]	C	T	2.398e^-4	0.733	INTRON Fife
2R	18260478	2R_18260478_SNP [dm3] 2R_22372973_SNP [dm6]	C	T	2.409e^-4	0.733	UTR_5_PRIME Liprin-gamma DOWNSTREAM CR44759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16504319	2L_16504319_MNP [dm3] 2L_16504319_MNP [dm6]	ATA	CCC	2.410e^-4	0.733	INTRON Tpr2
3R	10180031	3R_10180031_SNP [dm3] 3R_14354309_SNP [dm6]	C	T	2.412e^-4	0.733	INTRON NK7.1
3R	13140462	3R_13140462_SNP [dm3] 3R_17314740_SNP [dm6]	C	T	2.413e^-4	0.733	INTERGENIC
3R	15592568	3R_15592568_DEL [dm3] 3R_19766846_DEL [dm6]	CTCAAC	C	2.413e^-4	0.733	INTRON GluClalpha
2R	13344958	2R_13344958_SNP [dm3] 2R_17457453_SNP [dm6]	C	T	2.415e^-4	0.733	UPSTREAM CG14478 DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
2R	5272018	2R_5272018_SNP [dm3] 2R_9384513_SNP [dm6]	C	T	2.415e^-4	0.733	INTRON CG13954
3R	15466755	3R_15466755_SNP [dm3] 3R_19641033_SNP [dm6]	C	T	2.417e^-4	0.733	UTR_5_PRIME subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11039161	3L_11039161_SNP [dm3] 3L_11046061_SNP [dm6]	A	T	2.419e^-4	0.733	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	11039162	3L_11039162_SNP [dm3] 3L_11046062_SNP [dm6]	G	A	2.419e^-4	0.733	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	6086245	3L_6086245_SNP [dm3] 3L_6093145_SNP [dm6]	T	G	2.420e^-4	0.733	UTR_5_PRIME CG10469 DOWNSTREAM CG13293 & 1 other
3L	3486344	3L_3486344_SNP [dm3] 3L_3486344_SNP [dm6]	T	C	2.423e^-4	0.733	INTRON CG42324
3R	2699663	3R_2699663_SNP [dm3] 3R_6873941_SNP [dm6]	T	A	2.426e^-4	0.733	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	3027804	2L_3027804_SNP [dm3] 2L_3027804_SNP [dm6]	C	T	2.428e^-4	0.733	SYNONYMOUS_CODING CG3605	TF binding site mE1_TFBS_sens
X	5056268	X_5056268_SNP [dm3] X_5162235_SNP [dm6]	T	C	2.433e^-4	0.733	INTRON rg & 1 other
3R	8083447	3R_8083447_SNP [dm3] 3R_12257725_SNP [dm6]	T	C	2.435e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	3456378	3R_3456378_SNP [dm3] 3R_7630656_SNP [dm6]	C	T	2.436e^-4	0.733	INTRON CG34127
2R	7267791	2R_7267791_SNP [dm3] 2R_11380286_SNP [dm6]	C	T	2.439e^-4	0.733	DOWNSTREAM Sod3 INTERGENIC
3R	18705662	3R_18705662_SNP [dm3] 3R_22879940_SNP [dm6]	A	G	2.440e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8349824	3R_8349824_SNP [dm3] 3R_12524102_SNP [dm6]	G	T	2.445e^-4	0.733	INTRON Octbeta3R
X	6336510	X_6336510_SNP [dm3] X_6442477_SNP [dm6]	C	G	2.446e^-4	0.733	INTRON CG42340
3R	10290315	3R_10290315_SNP [dm3] 3R_14464593_SNP [dm6]	A	C	2.446e^-4	0.733	INTRON cv-c
3R	23512640	3R_23512640_MNP [dm3] 3R_27686918_MNP [dm6]	TCCG	CTTT	2.453e^-4	0.733	INTRON CG12880 & 1 other	TF binding site mE1_TFBS_chinmo
X	10978735	X_10978735_DEL [dm3] X_11084702_DEL [dm6]	AGTTTTGT	A	2.460e^-4	0.733	INTRON sev
2L	6238111	2L_6238111_SNP [dm3] 2L_6238111_SNP [dm6]	G	A	2.463e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	9659933	3L_9659933_SNP [dm3] 3L_9666833_SNP [dm6]	C	A	2.466e^-4	0.733	INTRON fry
3R	16524088	3R_16524088_SNP [dm3] 3R_20698366_SNP [dm6]	T	C	2.466e^-4	0.733	SYNONYMOUS_CODING Oamb	TF binding site mE1_TFBS_cad
3R	14356575	3R_14356575_SNP [dm3] 3R_18530853_SNP [dm6]	T	G	2.466e^-4	0.733	INTRON fru
3L	2694665	3L_2694665_SNP [dm3] 3L_2694665_SNP [dm6]	T	G	2.467e^-4	0.733	INTRON Fife
2L	5695756	2L_5695756_SNP [dm3] 2L_5695756_SNP [dm6]	A	G	2.474e^-4	0.734	INTERGENIC
3R	23005196	3R_23005196_SNP [dm3] 3R_27179474_SNP [dm6]	G	A	2.478e^-4	0.734	SYNONYMOUS_CODING Ser
3L	19951923	3L_19951923_SNP [dm3] 3L_19958823_SNP [dm6]	G	C	2.480e^-4	0.734	INTRON Ac76E
X	12253270	X_12253270_SNP [dm3] X_12359237_SNP [dm6]	C	G	2.489e^-4	0.734	INTERGENIC
3L	9404563	3L_9404563_SNP [dm3] 3L_9411463_SNP [dm6]	C	G	2.489e^-4	0.734	UPSTREAM CG4022 INTRON CG3689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14008206	2L_14008206_SNP [dm3] 2L_14008206_SNP [dm6]	G	A	2.496e^-4	0.735	SYNONYMOUS_CODING CG42692
3L	3943565	3L_3943565_SNP [dm3] 3L_3943565_SNP [dm6]	A	G	2.502e^-4	0.735	UTR_5_PRIME CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	5572600	X_5572600_SNP [dm3] X_5678567_SNP [dm6]	C	T	2.513e^-4	0.737	INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
2R	13347348	2R_13347348_SNP [dm3] 2R_17459843_SNP [dm6]	G	T	2.518e^-4	0.737	UPSTREAM CG14478 INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
2L	12213498	2L_12213498_SNP [dm3] 2L_12213498_SNP [dm6]	A	G	2.522e^-4	0.737	INTRON aret
3R	2861071	3R_2861071_SNP [dm3] 3R_7035349_SNP [dm6]	T	C	2.522e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4891407	2L_4891407_SNP [dm3] 2L_4891407_SNP [dm6]	G	T	2.534e^-4	0.739	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	2163194	3R_2163194_SNP [dm3] 3R_6337472_SNP [dm6]	C	A	2.536e^-4	0.739	DOWNSTREAM Osi19 INTERGENIC
3R	8219408	3R_8219408_SNP [dm3] 3R_12393686_SNP [dm6]	G	A	2.543e^-4	0.739	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402
3R	13916724	3R_13916724_SNP [dm3] 3R_18091002_SNP [dm6]	C	A	2.546e^-4	0.739	UTR_5_PRIME sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17026015	X_17026015_SNP [dm3] X_17131982_SNP [dm6]	A	T	2.571e^-4	0.741	INTRON CG5004
2L	3396440	2L_3396440_SNP [dm3] 2L_3396440_SNP [dm6]	G	A	2.573e^-4	0.741	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15755244	2L_15755244_SNP [dm3] 2L_15755244_SNP [dm6]	A	G	2.573e^-4	0.741	SYNONYMOUS_CODING l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
3L	6396433	3L_6396433_SNP [dm3] 3L_6403333_SNP [dm6]	C	T	2.575e^-4	0.741	INTRON CG42747
2L	4432890	2L_4432890_SNP [dm3] 2L_4432890_SNP [dm6]	G	C	2.575e^-4	0.741	INTRON CG15431
3R	2740723	3R_2740723_SNP [dm3] 3R_6915001_SNP [dm6]	G	C	2.578e^-4	0.741	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24604883	3R_24604883_SNP [dm3] 3R_28779161_SNP [dm6]	G	A	2.580e^-4	0.741	INTERGENIC
2R	11353744	2R_11353744_SNP [dm3] 2R_15466239_SNP [dm6]	C	G	2.583e^-4	0.741	INTRON CG43729
3R	25607206	3R_25607206_SNP [dm3] 3R_29781484_SNP [dm6]	G	C	2.592e^-4	0.741	INTRON kay
X	10567261	X_10567261_SNP [dm3] X_10673228_SNP [dm6]	G	C	2.603e^-4	0.741	SYNONYMOUS_CODING CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
3L	15754570	3L_15754570_DEL [dm3] 3L_15761470_DEL [dm6]	ACA	A	2.606e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9302561	3L_9302561_SNP [dm3] 3L_9309461_SNP [dm6]	T	A	2.618e^-4	0.741	INTERGENIC
3R	16522258	3R_16522258_SNP [dm3] 3R_20696536_SNP [dm6]	T	A	2.621e^-4	0.741	INTRON Oamb
3L	1125720	3L_1125720_SNP [dm3] 3L_1125720_SNP [dm6]	G	A	2.624e^-4	0.741	INTERGENIC	regulatory region REDfly_CRMs
3R	2670542	3R_2670542_SNP [dm3] 3R_6844820_SNP [dm6]	G	A	2.629e^-4	0.741	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4251281	3R_4251281_INS [dm3] 3R_8425559_INS [dm6]	C	CA	2.630e^-4	0.741	INTRON CG45263
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	2.631e^-4	0.741	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	20371713	X_20371713_SNP [dm3] X_20500686_SNP [dm6]	T	A	2.636e^-4	0.741	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2028716	3R_2028716_SNP [dm3] 3R_6202994_SNP [dm6]	G	A	2.652e^-4	0.741	INTRON Osi24
3R	10180989	3R_10180989_DEL [dm3] 3R_14355267_DEL [dm6]	GTGGGGGAG	G	2.658e^-4	0.741	INTRON NK7.1
2L	5840851	2L_5840851_SNP [dm3] 2L_5840851_SNP [dm6]	G	A	2.659e^-4	0.741	INTRON TrissinR
3R	1352568	3R_1352568_SNP [dm3] 3R_5526846_SNP [dm6]	T	G	2.660e^-4	0.741	INTRON Itp-r83A
2R	10473077	2R_10473077_SNP [dm3] 2R_14585572_SNP [dm6]	A	T	2.664e^-4	0.741	UTR_3_PRIME ttv DOWNSTREAM ttv
3L	13326289	3L_13326289_SNP [dm3] 3L_13333189_SNP [dm6]	T	C	2.667e^-4	0.741	INTERGENIC
X	21099486	X_21099486_SNP [dm3] X_21228459_SNP [dm6]	G	A	2.670e^-4	0.741	INTRON CG32521
3L	15249557	3L_15249557_SNP [dm3] 3L_15256457_SNP [dm6]	C	A	2.674e^-4	0.741	INTERGENIC
3R	8032979	3R_8032979_SNP [dm3] 3R_12207257_SNP [dm6]	C	T	2.678e^-4	0.741	DOWNSTREAM tRNA:CR31356 & 1 other INTERGENIC
3R	1412288	3R_1412288_SNP [dm3] 3R_5586566_SNP [dm6]	G	A	2.684e^-4	0.741	NON_SYNONYMOUS_CODING CG2926	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21434151	X_21434151_SNP [dm3] X_21563124_SNP [dm6]	G	A	2.695e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13532728	2R_13532728_SNP [dm3] 2R_17645223_SNP [dm6]	C	T	2.697e^-4	0.741	INTERGENIC
2R	9972110	2R_9972110_SNP [dm3] 2R_14084605_SNP [dm6]	T	C	2.700e^-4	0.741	INTRON Prosap	TF binding site mE1_TFBS_bab1
3L	15249583	3L_15249583_DEL [dm3] 3L_15256483_DEL [dm6]	TAGTA	AT	2.700e^-4	0.741	INTERGENIC
3R	10659273	3R_10659273_SNP [dm3] 3R_14833551_SNP [dm6]	G	A	2.700e^-4	0.741	INTRON btsz
3R	1365148	3R_1365148_SNP [dm3] 3R_5539426_SNP [dm6]	T	A	2.705e^-4	0.741	DOWNSTREAM CG2519 & 1 other INTERGENIC
3R	23005193	3R_23005193_SNP [dm3] 3R_27179471_SNP [dm6]	G	C	2.711e^-4	0.741	SYNONYMOUS_CODING Ser
3R	15604558	3R_15604558_SNP [dm3] 3R_19778836_SNP [dm6]	G	T	2.713e^-4	0.741	NON_SYNONYMOUS_CODING CG11391	TF binding site mE1_TFBS_sens
2R	20366347	2R_20366347_SNP [dm3] 2R_24478824_SNP [dm6]	A	T	2.732e^-4	0.741	INTRON CG13579
2R	14514637	2R_14514637_SNP [dm3] 2R_18627132_SNP [dm6]	G	A	2.732e^-4	0.741	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site mE1_TFBS_sens
2L	11947689	2L_11947689_DEL [dm3] 2L_11947689_DEL [dm6]	AGC	A	2.735e^-4	0.741	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
2L	14281357	2L_14281357_SNP [dm3] 2L_14281357_SNP [dm6]	A	G	2.737e^-4	0.741	INTRON wb	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	3993387	3R_3993387_SNP [dm3] 3R_8167665_SNP [dm6]	T	A	2.743e^-4	0.741	INTRON grn	TF binding site mE1_TFBS_chinmo
2R	7267624	2R_7267624_DEL [dm3] 2R_11380119_DEL [dm6]	CC	G	2.745e^-4	0.741	UPSTREAM Tsp47F DOWNSTREAM Sod3 INTERGENIC
3L	14112100	3L_14112100_DEL [dm3] 3L_14119000_DEL [dm6]	ACCCCAGCAGGTGGTTTCAG...	C	2.751e^-4	0.741	INTRON Sox21b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17257650	3L_17257650_SNP [dm3] 3L_17264550_SNP [dm6]	C	T	2.755e^-4	0.741	SYNONYMOUS_CODING CG13723 DOWNSTREAM CR43870
3R	9755784	3R_9755784_SNP [dm3] 3R_13930062_SNP [dm6]	A	G	2.760e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	14650959	3R_14650959_SNP [dm3] 3R_18825237_SNP [dm6]	A	G	2.774e^-4	0.741	INTRON CG18208
2L	1387960	2L_1387960_INS [dm3] 2L_1387960_INS [dm6]	T	TTTGTCGCGC	2.774e^-4	0.741	INTRON lea
2L	13100499	2L_13100499_SNP [dm3] 2L_13100499_SNP [dm6]	G	A	2.775e^-4	0.741	INTERGENIC
X	8529216	X_8529216_SNP [dm3] X_8635183_SNP [dm6]	T	C	2.790e^-4	0.741	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	11056071	X_11056071_SNP [dm3] X_11162038_SNP [dm6]	C	A	2.793e^-4	0.741	INTRON Dlic	TF binding site mE1_TFBS_sens
3R	3517221	3R_3517221_SNP [dm3] 3R_7691499_SNP [dm6]	T	C	2.793e^-4	0.741	INTRON Nlg1
3L	14553001	3L_14553001_SNP [dm3] 3L_14559901_SNP [dm6]	A	C	2.795e^-4	0.741	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	19091980	X_19091980_SNP [dm3] X_19197947_SNP [dm6]	G	A	2.800e^-4	0.741	UTR_3_PRIME CG7990
3R	10188905	3R_10188905_SNP [dm3] 3R_14363183_SNP [dm6]	T	C	2.807e^-4	0.741	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15684926	3L_15684926_SNP [dm3] 3L_15691826_SNP [dm6]	G	A	2.807e^-4	0.741	SYNONYMOUS_CODING CG34451 UTR_5_PRIME CG34451	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
3R	10181011	3R_10181011_SNP [dm3] 3R_14355289_SNP [dm6]	G	A	2.820e^-4	0.741	INTRON NK7.1
3L	1258824	3L_1258824_SNP [dm3] 3L_1258824_SNP [dm6]	G	A	2.826e^-4	0.741	INTRON CG9134
3R	17908323	3R_17908323_SNP [dm3] 3R_22082601_SNP [dm6]	T	C	2.827e^-4	0.741	INTRON CG13408
3L	14350115	3L_14350115_SNP [dm3] 3L_14357015_SNP [dm6]	A	G	2.828e^-4	0.741	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	19912168	2R_19912168_SNP [dm3] 2R_24024645_SNP [dm6]	C	T	2.833e^-4	0.741	DOWNSTREAM CG11388 INTRON Adk2 EXON CR45350	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2379733	3L_2379733_SNP [dm3] 3L_2379733_SNP [dm6]	A	G	2.836e^-4	0.741	INTRON CG45186
3R	1405717	3R_1405717_SNP [dm3] 3R_5579995_SNP [dm6]	G	T	2.840e^-4	0.741	UTR_3_PRIME CG2926 DOWNSTREAM CRMP	TF binding site mE1_TFBS_kn
3R	1931699	3R_1931699_SNP [dm3] 3R_6105977_SNP [dm6]	A	T	2.845e^-4	0.741	INTERGENIC	regulatory region REDfly_CRMs
2R	9122787	2R_9122787_SNP [dm3] 2R_13235282_SNP [dm6]	A	T	2.848e^-4	0.741	UTR_5_PRIME CG4670 UPSTREAM CG4676 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19962569	3L_19962569_SNP [dm3] 3L_19969469_SNP [dm6]	G	A	2.848e^-4	0.741	INTRON Ac76E
2L	14865403	2L_14865403_SNP [dm3] 2L_14865403_SNP [dm6]	C	A	2.856e^-4	0.741	INTERGENIC
2R	14281057	2R_14281057_SNP [dm3] 2R_18393552_SNP [dm6]	G	T	2.858e^-4	0.741	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_inv
2R	18608372	2R_18608372_SNP [dm3] 2R_22720867_SNP [dm6]	G	A	2.858e^-4	0.741	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	18132668	3R_18132668_SNP [dm3] 3R_22306946_SNP [dm6]	G	A	2.867e^-4	0.741	INTERGENIC
3R	15751626	3R_15751626_SNP [dm3] 3R_19925904_SNP [dm6]	A	T	2.869e^-4	0.741	UPSTREAM CG4462 DOWNSTREAM CG4459 INTERGENIC
2L	19756818	2L_19756818_SNP [dm3] 2L_19756818_SNP [dm6]	A	T	2.873e^-4	0.741	UTR_5_PRIME CG10631 DOWNSTREAM CG10628
2L	3238011	2L_3238011_SNP [dm3] 2L_3238011_SNP [dm6]	G	C	2.874e^-4	0.741	INTERGENIC
2L	6842898	2L_6842898_SNP [dm3] 2L_6842898_SNP [dm6]	T	C	2.875e^-4	0.741	INTERGENIC
3R	2405675	3R_2405675_SNP [dm3] 3R_6579953_SNP [dm6]	T	A	2.893e^-4	0.741	UPSTREAM CG2336 INTRON dpr11
3R	10181000	3R_10181000_DEL [dm3] 3R_14355278_DEL [dm6]	TAGGGAA	T	2.898e^-4	0.741	INTRON NK7.1
2L	6902146	2L_6902146_SNP [dm3] 2L_6902146_SNP [dm6]	G	A	2.898e^-4	0.741	DOWNSTREAM mir-932 INTRON Nlg2 EXON mir-932
2L	10292985	2L_10292985_SNP [dm3] 2L_10292985_SNP [dm6]	C	A	2.904e^-4	0.741	UPSTREAM CG5604 INTRON Hand	regulatory region REDfly_CRMs
3L	6944180	3L_6944180_SNP [dm3] 3L_6951080_SNP [dm6]	A	G	2.905e^-4	0.741	SYNONYMOUS_CODING CG10077 DOWNSTREAM CG10077	TF binding site mE1_TFBS_inv
3L	9302539	3L_9302539_SNP [dm3] 3L_9309439_SNP [dm6]	T	C	2.907e^-4	0.741	INTERGENIC
X	8055258	X_8055258_SNP [dm3] X_8161225_SNP [dm6]	C	T	2.910e^-4	0.741	SYNONYMOUS_CODING CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo
3L	6396438	3L_6396438_SNP [dm3] 3L_6403338_SNP [dm6]	G	C	2.912e^-4	0.741	INTRON CG42747
3R	23511446	3R_23511446_SNP [dm3] 3R_27685724_SNP [dm6]	T	A	2.918e^-4	0.741	UTR_3_PRIME CG31055 UPSTREAM CG12880
3L	16516287	3L_16516287_SNP [dm3] 3L_16523187_SNP [dm6]	G	A	2.919e^-4	0.741	INTRON CG43373
3R	14156645	3R_14156645_SNP [dm3] 3R_18330923_SNP [dm6]	A	G	2.921e^-4	0.741	DOWNSTREAM CG15803 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	20366350	2R_20366350_INS [dm3] 2R_24478827_INS [dm6]	C	CC	2.924e^-4	0.741	INTRON CG13579
3R	25086418	3R_25086418_SNP [dm3] 3R_29260696_SNP [dm6]	G	T	2.924e^-4	0.741	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	9403171	3L_9403171_SNP [dm3] 3L_9410071_SNP [dm6]	A	G	2.927e^-4	0.741	UTR_5_PRIME CG4022 UPSTREAM CG3689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3402841	2L_3402841_DEL [dm3] 2L_3402841_DEL [dm6]	TGGGTAAAACGGT...	T	2.936e^-4	0.741	INTERGENIC
3R	10119384	3R_10119384_SNP [dm3] 3R_14293662_SNP [dm6]	G	A	2.939e^-4	0.741	INTRON CG12207
3R	9786242	3R_9786242_SNP [dm3] 3R_13960520_SNP [dm6]	G	C	2.940e^-4	0.741	DOWNSTREAM CG9925 & 1 other INTERGENIC
3L	4653501	3L_4653501_SNP [dm3] 3L_4653501_SNP [dm6]	C	G	2.943e^-4	0.741	INTRON axo
3L	5959040	3L_5959040_SNP [dm3] 3L_5965940_SNP [dm6]	A	G	2.948e^-4	0.741	INTERGENIC
3R	3935693	3R_3935693_SNP [dm3] 3R_8109971_SNP [dm6]	A	G	2.957e^-4	0.741	INTRON puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	3243856	3R_3243856_SNP [dm3] 3R_7418134_SNP [dm6]	C	T	2.959e^-4	0.741	UPSTREAM CG31544 INTERGENIC
X	19091953	X_19091953_SNP [dm3] X_19197920_SNP [dm6]	G	A	2.967e^-4	0.741	UTR_3_PRIME CG7990
2L	10104398	2L_10104398_SNP [dm3] 2L_10104398_SNP [dm6]	C	T	2.969e^-4	0.741	INTRON CG44153 & 1 other
2L	2513835	2L_2513835_SNP [dm3] 2L_2513835_SNP [dm6]	A	T	2.986e^-4	0.741	INTERGENIC
3R	14438044	3R_14438044_SNP [dm3] 3R_18612322_SNP [dm6]	G	A	2.988e^-4	0.741	INTRON qin & 1 other
2R	14578725	2R_14578725_SNP [dm3] 2R_18691220_SNP [dm6]	G	C	2.991e^-4	0.741	INTRON Sik3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18261619	2R_18261619_SNP [dm3] 2R_22374114_SNP [dm6]	T	A	2.992e^-4	0.741	UPSTREAM Rtf1 INTRON CR44759	TF binding site BDTNP1_TFBS_dl
3L	19769760	3L_19769760_DEL [dm3] 3L_19776660_DEL [dm6]	GGAACATTAAG...	G	3.008e^-4	0.741	INTRON CG42637 & 1 other
3L	22604519	3L_22604519_SNP [dm3] 3L_22611419_SNP [dm6]	C	T	3.009e^-4	0.741	INTRON CG14459
3R	16524094	3R_16524094_SNP [dm3] 3R_20698372_SNP [dm6]	C	G	3.016e^-4	0.741	SYNONYMOUS_CODING Oamb	TF binding site mE1_TFBS_cad
2L	9576805	2L_9576805_SNP [dm3] 2L_9576805_SNP [dm6]	A	T	3.022e^-4	0.741	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15975626	3L_15975626_SNP [dm3] 3L_15982526_SNP [dm6]	G	A	3.026e^-4	0.741	UTR_5_PRIME brm UPSTREAM Arl1 DOWNSTREAM CG17027	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17829156	3L_17829156_SNP [dm3] 3L_17836056_SNP [dm6]	C	A	3.026e^-4	0.741	UPSTREAM CG32189 INTRON Grd	transposable element FlyBase
2R	14346977	2R_14346977_SNP [dm3] 2R_18459472_SNP [dm6]	T	G	3.042e^-4	0.741	DOWNSTREAM CG30116 INTRON CG30116
X	17025896	X_17025896_INS [dm3] X_17131863_INS [dm6]	T	TA	3.043e^-4	0.741	INTRON CG5004
3L	9598193	3L_9598193_SNP [dm3] 3L_9605093_SNP [dm6]	T	G	3.044e^-4	0.741	INTRON CG3280
3L	18645607	3L_18645607_SNP [dm3] 3L_18652507_SNP [dm6]	A	T	3.045e^-4	0.741	INTRON MYPT-75D
3L	15755995	3L_15755995_INS [dm3] 3L_15762895_INS [dm6]	A	AGTGAATTAGGTCCTGAA...	3.046e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2061715	3L_2061715_SNP [dm3] 3L_2061715_SNP [dm6]	A	G	3.072e^-4	0.741	INTRON sls
2R	9888437	2R_9888437_SNP [dm3] 2R_14000932_SNP [dm6]	A	G	3.074e^-4	0.741	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	14416814	2L_14416814_SNP [dm3] 2L_14416814_SNP [dm6]	A	G	3.079e^-4	0.741	UTR_3_PRIME Pburs
2L	14416818	2L_14416818_SNP [dm3] 2L_14416818_SNP [dm6]	T	C	3.079e^-4	0.741	UTR_3_PRIME Pburs
3R	810662	3R_810662_DEL [dm3] 3R_4984940_DEL [dm6]	CGACGCCGACTGCATTTCAT...	C	3.081e^-4	0.741	UPSTREAM CG14662 EXON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	1329419	3R_1329419_SNP [dm3] 3R_5503697_SNP [dm6]	A	G	3.082e^-4	0.741	UPSTREAM CG31547 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8555195	2R_8555195_SNP [dm3] 2R_12667690_SNP [dm6]	C	A	3.087e^-4	0.741	INTRON nemy
3R	1663506	3R_1663506_SNP [dm3] 3R_5837784_SNP [dm6]	T	C	3.102e^-4	0.741	NON_SYNONYMOUS_CODING CG1208	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8352983	3R_8352983_SNP [dm3] 3R_12527261_SNP [dm6]	T	A	3.111e^-4	0.741	INTRON Octbeta3R & 1 other
2R	13749454	2R_13749454_SNP [dm3] 2R_17861949_SNP [dm6]	A	G	3.115e^-4	0.741	SYNONYMOUS_CODING thr DOWNSTREAM CG14490	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	4857613	3R_4857613_SNP [dm3] 3R_9031891_SNP [dm6]	G	T	3.115e^-4	0.741	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	7720904	2R_7720904_SNP [dm3] 2R_11833399_SNP [dm6]	T	A	3.117e^-4	0.741	INTRON Sobp
3R	11128835	3R_11128835_SNP [dm3] 3R_15303113_SNP [dm6]	A	C	3.118e^-4	0.741	INTRON Tm1
3L	16516202	3L_16516202_SNP [dm3] 3L_16523102_SNP [dm6]	T	C	3.129e^-4	0.741	INTRON CG43373
3R	17696272	3R_17696272_SNP [dm3] 3R_21870550_SNP [dm6]	A	G	3.141e^-4	0.741	UPSTREAM CG31431 INTERGENIC
X	14453770	X_14453770_SNP [dm3] X_14559737_SNP [dm6]	A	G	3.141e^-4	0.741	INTERGENIC
3R	24604931	3R_24604931_SNP [dm3] 3R_28779209_SNP [dm6]	A	T	3.144e^-4	0.741	INTERGENIC
3L	6570855	3L_6570855_SNP [dm3] 3L_6577755_SNP [dm6]	A	G	3.144e^-4	0.741	INTRON CG18769 & 1 other
2L	12253881	2L_12253881_SNP [dm3] 2L_12253881_SNP [dm6]	G	A	3.147e^-4	0.741	INTRON aret
3L	2659471	3L_2659471_SNP [dm3] 3L_2659471_SNP [dm6]	A	G	3.147e^-4	0.741	UPSTREAM CG33233 INTRON Fife
2R	5233871	2R_5233871_SNP [dm3] 2R_9346366_SNP [dm6]	A	G	3.150e^-4	0.741	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
3R	1329415	3R_1329415_SNP [dm3] 3R_5503693_SNP [dm6]	G	C	3.155e^-4	0.741	UPSTREAM CG31547 INTERGENIC	TF binding site mE1_TFBS_HSA
X	8891789	X_8891789_SNP [dm3] X_8997756_SNP [dm6]	T	C	3.155e^-4	0.741	INTRON rdgA & 1 other
2L	541774	2L_541774_SNP [dm3] 2L_541774_SNP [dm6]	A	G	3.162e^-4	0.741	SYNONYMOUS_CODING lwr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	13773408	2R_13773408_SNP [dm3] 2R_17885903_SNP [dm6]	A	T	3.163e^-4	0.741	INTRON Elk
3L	19961534	3L_19961534_SNP [dm3] 3L_19968434_SNP [dm6]	T	A	3.165e^-4	0.741	INTRON Ac76E
X	15430863	X_15430863_SNP [dm3] X_15536830_SNP [dm6]	C	T	3.167e^-4	0.741	INTRON Ac13E
X	15172935	X_15172935_SNP [dm3] X_15278902_SNP [dm6]	A	G	3.176e^-4	0.741	INTERGENIC
3L	2398729	3L_2398729_SNP [dm3] 3L_2398729_SNP [dm6]	T	A	3.177e^-4	0.741	INTRON CG45186
3L	2062014	3L_2062014_SNP [dm3] 3L_2062014_SNP [dm6]	C	T	3.181e^-4	0.741	INTRON sls
X	7191785	X_7191785_SNP [dm3] X_7297752_SNP [dm6]	T	C	3.182e^-4	0.741	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13917617	3R_13917617_SNP [dm3] 3R_18091895_SNP [dm6]	T	G	3.186e^-4	0.741	INTRON sr
3L	591950	3L_591950_SNP [dm3] 3L_591950_SNP [dm6]	T	C	3.199e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13344993	2R_13344993_SNP [dm3] 2R_17457488_SNP [dm6]	C	G	3.202e^-4	0.741	UPSTREAM CG14478 DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
2L	3398014	2L_3398014_SNP [dm3] 2L_3398014_SNP [dm6]	T	C	3.208e^-4	0.741	UPSTREAM CG34175 & 1 other INTERGENIC
3R	5020544	3R_5020544_SNP [dm3] 3R_9194822_SNP [dm6]	C	A	3.219e^-4	0.741	INTRON pum
3L	11064110	3L_11064110_SNP [dm3] 3L_11071010_SNP [dm6]	A	T	3.220e^-4	0.741	INTRON Mocs1
X	3169069	X_3169069_SNP [dm3] X_3275036_SNP [dm6]	A	G	3.221e^-4	0.741	INTRON dnc
X	9476270	X_9476270_SNP [dm3] X_9582237_SNP [dm6]	A	G	3.231e^-4	0.741	UPSTREAM CR45540 INTERGENIC
X	8890659	X_8890659_SNP [dm3] X_8996626_SNP [dm6]	T	A	3.233e^-4	0.741	INTRON rdgA & 1 other
3L	14514091	3L_14514091_SNP [dm3] 3L_14520991_SNP [dm6]	T	C	3.236e^-4	0.741	INTRON bbg & 1 other
3R	16854758	3R_16854758_SNP [dm3] 3R_21029036_SNP [dm6]	C	T	3.241e^-4	0.741	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22602984	3L_22602984_SNP [dm3] 3L_22609884_SNP [dm6]	G	C	3.241e^-4	0.741	INTRON CG14459	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	23604446	3R_23604446_SNP [dm3] 3R_27778724_SNP [dm6]	C	T	3.250e^-4	0.741	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3R	10181008	3R_10181008_SNP [dm3] 3R_14355286_SNP [dm6]	G	T	3.257e^-4	0.741	INTRON NK7.1
3R	8274107	3R_8274107_SNP [dm3] 3R_12448385_SNP [dm6]	G	A	3.258e^-4	0.741	NON_SYNONYMOUS_CODING CG5538 UPSTREAM CG18549 DOWNSTREAM Desat1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14514328	2R_14514328_SNP [dm3] 2R_18626823_SNP [dm6]	G	A	3.259e^-4	0.741	SYNONYMOUS_CODING Sec6	TF binding site mE1_TFBS_sens
2R	14514457	2R_14514457_SNP [dm3] 2R_18626952_SNP [dm6]	A	G	3.259e^-4	0.741	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site mE1_TFBS_sens
2R	14514469	2R_14514469_SNP [dm3] 2R_18626964_SNP [dm6]	T	C	3.259e^-4	0.741	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site mE1_TFBS_sens
3R	18384035	3R_18384035_INS [dm3] 3R_22558313_INS [dm6]	T	TT	3.260e^-4	0.741	DOWNSTREAM CG5278 INTERGENIC
3R	2405597	3R_2405597_SNP [dm3] 3R_6579875_SNP [dm6]	G	A	3.262e^-4	0.741	UPSTREAM CG2336 INTRON dpr11
X	4134484	X_4134484_SNP [dm3] X_4240451_SNP [dm6]	T	A	3.268e^-4	0.741	INTERGENIC
X	19389092	X_19389092_SNP [dm3] X_19495059_SNP [dm6]	G	A	3.268e^-4	0.741	UPSTREAM CG12204 & 3 others DOWNSTREAM CR44340 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_kn
2L	3239013	2L_3239013_SNP [dm3] 2L_3239013_SNP [dm6]	A	T	3.269e^-4	0.741	INTERGENIC
3R	16717004	3R_16717004_SNP [dm3] 3R_20891282_SNP [dm6]	G	T	3.269e^-4	0.741	UPSTREAM tRNA:CR31333 DOWNSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	12226786	2L_12226786_SNP [dm3] 2L_12226786_SNP [dm6]	T	C	3.280e^-4	0.741	INTRON aret
X	11998051	X_11998051_SNP [dm3] X_12104018_SNP [dm6]	C	G	3.280e^-4	0.741	UPSTREAM CG11356 INTRON CR43960 & 1 other
2R	4408195	2R_4408195_SNP [dm3] 2R_8520690_SNP [dm6]	G	T	3.283e^-4	0.741	INTRON mtt
3R	17903195	3R_17903195_SNP [dm3] 3R_22077473_SNP [dm6]	T	C	3.284e^-4	0.741	UTR_3_PRIME how
3L	6396442	3L_6396442_SNP [dm3] 3L_6403342_SNP [dm6]	T	C	3.287e^-4	0.741	INTRON CG42747
3L	13005259	3L_13005259_SNP [dm3] 3L_13012159_SNP [dm6]	T	A	3.289e^-4	0.741	SYNONYMOUS_CODING MICAL-like UPSTREAM CG11261
3R	9568631	3R_9568631_SNP [dm3] 3R_13742909_SNP [dm6]	A	G	3.289e^-4	0.741	INTRON CG34383	TF binding site mE1_TFBS_inv
3R	25797603	3R_25797603_SNP [dm3] 3R_29971881_SNP [dm6]	G	C	3.295e^-4	0.741	INTERGENIC
2R	13345949	2R_13345949_INS [dm3] 2R_17458444_INS [dm6]	A	ACA	3.298e^-4	0.741	UPSTREAM CG14478 INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	3911350	3L_3911350_SNP [dm3] 3L_3911350_SNP [dm6]	T	G	3.303e^-4	0.741	UTR_3_PRIME Eip63F-1 DOWNSTREAM Eip63F-1
3L	19961891	3L_19961891_SNP [dm3] 3L_19968791_SNP [dm6]	A	T	3.303e^-4	0.741	INTRON Ac76E
3R	4195224	3R_4195224_SNP [dm3] 3R_8369502_SNP [dm6]	G	A	3.305e^-4	0.741	INTRON CG45263
2L	10853785	2L_10853785_SNP [dm3] 2L_10853785_SNP [dm6]	C	T	3.308e^-4	0.741	SPLICE_SITE_REGION CG43129 DOWNSTREAM Dnz1 INTRON CG43129	TF binding site mE1_TFBS_chinmo
3R	2799320	3R_2799320_SNP [dm3] 3R_6973598_SNP [dm6]	G	C	3.310e^-4	0.741	INTRON Antp	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2871564	3L_2871564_SNP [dm3] 3L_2871564_SNP [dm6]	G	A	3.315e^-4	0.741	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad
X	20396944	X_20396944_SNP [dm3] X_20525917_SNP [dm6]	G	A	3.320e^-4	0.741	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1 transposable element FlyBase
3R	25768749	3R_25768749_DEL [dm3] 3R_29943027_DEL [dm6]	AATTA	A	3.325e^-4	0.741	INTRON CG15523
3L	6088721	3L_6088721_SNP [dm3] 3L_6095621_SNP [dm6]	T	A	3.328e^-4	0.741	UPSTREAM CG10467 INTRON loj
3L	4104457	3L_4104457_SNP [dm3] 3L_4104457_SNP [dm6]	G	A	3.328e^-4	0.741	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	18612005	2R_18612005_DEL [dm3] 2R_22724500_DEL [dm6]	TAT	T	3.340e^-4	0.741	INTRON jbug	TF binding site BDTNP1_TFBS_sna mE1_TFBS_inv
2L	4631737	2L_4631737_SNP [dm3] 2L_4631737_SNP [dm6]	T	C	3.340e^-4	0.741	INTERGENIC
X	20396960	X_20396960_INS [dm3] X_20525933_INS [dm6]	AA	GTTGTT	3.344e^-4	0.741	INTERGENIC	transposable element FlyBase
3R	15637386	3R_15637386_SNP [dm3] 3R_19811664_SNP [dm6]	G	A	3.350e^-4	0.741	INTRON bnl
3R	8520657	3R_8520657_SNP [dm3] 3R_12694935_SNP [dm6]	G	A	3.350e^-4	0.741	UPSTREAM NijC & 1 other DOWNSTREAM Arp1 INTERGENIC
3R	8236387	3R_8236387_SNP [dm3] 3R_12410665_SNP [dm6]	G	A	3.352e^-4	0.741	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4004882	3R_4004882_SNP [dm3] 3R_8179160_SNP [dm6]	G	T	3.361e^-4	0.741	INTRON grn
2L	10530739	2L_10530739_SNP [dm3] 2L_10530739_SNP [dm6]	A	C	3.361e^-4	0.741	INTRON Lip4
3R	17908275	3R_17908275_SNP [dm3] 3R_22082553_SNP [dm6]	C	T	3.364e^-4	0.741	INTRON CG13408
3L	962640	3L_962640_SNP [dm3] 3L_962640_SNP [dm6]	G	C	3.364e^-4	0.741	INTRON Glut1
2R	6801285	2R_6801285_DEL [dm3] 2R_10913780_DEL [dm6]	CAGAGTGT	C	3.365e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7731455	3R_7731455_SNP [dm3] 3R_11905733_SNP [dm6]	A	G	3.365e^-4	0.741	INTRON Cad87A
3R	25816292	3R_25816292_SNP [dm3] 3R_29990570_SNP [dm6]	C	T	3.367e^-4	0.741	UTR_3_PRIME CG7896 DOWNSTREAM Acph-1	TF binding site mE1_TFBS_cad
3R	10184289	3R_10184289_SNP [dm3] 3R_14358567_SNP [dm6]	T	A	3.373e^-4	0.741	UTR_3_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12995727	2R_12995727_SNP [dm3] 2R_17108222_SNP [dm6]	C	T	3.374e^-4	0.741	UPSTREAM CG15611 DOWNSTREAM CG30456 INTERGENIC
3R	2533528	3R_2533528_SNP [dm3] 3R_6707806_SNP [dm6]	A	T	3.379e^-4	0.741	UTR_3_PRIME pb	TF binding site mE1_TFBS_HSA
2R	16062788	2R_16062788_SNP [dm3] 2R_20175283_SNP [dm6]	T	A	3.386e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14192978	2R_14192978_SNP [dm3] 2R_18305473_SNP [dm6]	G	T	3.388e^-4	0.741	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	7998834	3R_7998834_SNP [dm3] 3R_12173112_SNP [dm6]	A	T	3.395e^-4	0.741	INTERGENIC
3L	17164956	3L_17164956_SNP [dm3] 3L_17171856_SNP [dm6]	C	T	3.400e^-4	0.741	INTRON Rbp6
3R	2533529	3R_2533529_SNP [dm3] 3R_6707807_SNP [dm6]	A	T	3.401e^-4	0.741	UTR_3_PRIME pb	TF binding site mE1_TFBS_HSA
3R	22999928	3R_22999928_SNP [dm3] 3R_27174206_SNP [dm6]	C	T	3.401e^-4	0.741	SYNONYMOUS_CODING Ser	TF binding site mE1_TFBS_cad
3L	16516279	3L_16516279_SNP [dm3] 3L_16523179_SNP [dm6]	G	A	3.405e^-4	0.741	INTRON CG43373
3R	17905506	3R_17905506_SNP [dm3] 3R_22079784_SNP [dm6]	A	C	3.408e^-4	0.741	UPSTREAM CG13408 DOWNSTREAM how INTERGENIC
2R	16140623	2R_16140623_SNP [dm3] 2R_20253118_SNP [dm6]	C	G	3.411e^-4	0.741	INTRON CG9864
3R	25791712	3R_25791712_SNP [dm3] 3R_29965990_SNP [dm6]	G	T	3.412e^-4	0.741	INTRON TkR99D
2R	6382703	2R_6382703_SNP [dm3] 2R_10495198_SNP [dm6]	T	G	3.417e^-4	0.741	INTRON lola
3L	17819926	3L_17819926_SNP [dm3] 3L_17826826_SNP [dm6]	A	G	3.420e^-4	0.741	INTRON Grd
3R	8026722	3R_8026722_SNP [dm3] 3R_12201000_SNP [dm6]	G	A	3.424e^-4	0.741	INTERGENIC
2R	15312160	2R_15312160_SNP [dm3] 2R_19424655_SNP [dm6]	G	C	3.426e^-4	0.741	UPSTREAM CalpA & 1 other INTRON hts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	7710704	3L_7710704_SNP [dm3] 3L_7717604_SNP [dm6]	C	T	3.428e^-4	0.741	SYNONYMOUS_CODING Ank2 INTRON CG32373	TF binding site mE1_TFBS_chinmo
3R	15480370	3R_15480370_SNP [dm3] 3R_19654648_SNP [dm6]	C	T	3.432e^-4	0.741	SYNONYMOUS_CODING CG6184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19540341	3R_19540341_SNP [dm3] 3R_23714619_SNP [dm6]	G	A	3.435e^-4	0.741	INTRON nau
3R	8520678	3R_8520678_SNP [dm3] 3R_12694956_SNP [dm6]	A	G	3.436e^-4	0.741	UPSTREAM NijC & 1 other DOWNSTREAM Arp1 INTERGENIC
3L	2198634	3L_2198634_SNP [dm3] 3L_2198634_SNP [dm6]	A	G	3.437e^-4	0.741	DOWNSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10732187	2R_10732187_SNP [dm3] 2R_14844682_SNP [dm6]	T	A	3.439e^-4	0.741	INTRON NaPi-T	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9576778	2L_9576778_SNP [dm3] 2L_9576778_SNP [dm6]	T	C	3.453e^-4	0.741	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3L	17829310	3L_17829310_DEL [dm3] 3L_17836210_DEL [dm6]	TTTTCCGCATGCTAAAATCG...	T	3.458e^-4	0.741	INTRON Grd
3L	17829337	3L_17829337_SNP [dm3] 3L_17836237_SNP [dm6]	T	A	3.458e^-4	0.741	INTRON Grd
2R	15467738	2R_15467738_SNP [dm3] 2R_19580233_SNP [dm6]	A	G	3.459e^-4	0.741	INTRON sm
3R	1936196	3R_1936196_SNP [dm3] 3R_6110474_SNP [dm6]	T	C	3.460e^-4	0.741	DOWNSTREAM Obp83cd INTRON Obp83ef
3R	25848077	3R_25848077_SNP [dm3] 3R_30022355_SNP [dm6]	A	C	3.460e^-4	0.741	UTR_3_PRIME RpS28a UPSTREAM Axn & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6752669	3L_6752669_SNP [dm3] 3L_6759569_SNP [dm6]	T	C	3.462e^-4	0.741	INTRON CG32392
3L	2884587	3L_2884587_SNP [dm3] 3L_2884587_SNP [dm6]	C	T	3.465e^-4	0.741	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	15636807	3R_15636807_SNP [dm3] 3R_19811085_SNP [dm6]	A	T	3.467e^-4	0.741	INTRON bnl
2R	13025461	2R_13025461_SNP [dm3] 2R_17137956_SNP [dm6]	T	C	3.471e^-4	0.741	SYNONYMOUS_CODING CG11395
X	9998836	X_9998836_SNP [dm3] X_10104803_SNP [dm6]	A	T	3.480e^-4	0.741	INTRON RhoU
3L	10356344	3L_10356344_SNP [dm3] 3L_10363244_SNP [dm6]	A	T	3.491e^-4	0.741	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1388103	2L_1388103_SNP [dm3] 2L_1388103_SNP [dm6]	C	T	3.494e^-4	0.741	INTRON lea
3R	23007850	3R_23007850_SNP [dm3] 3R_27182128_SNP [dm6]	C	A	3.496e^-4	0.741	INTRON Ser
3R	13256920	3R_13256920_SNP [dm3] 3R_17431198_SNP [dm6]	T	G	3.501e^-4	0.741	INTRON CG5873	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7058231	3L_7058231_SNP [dm3] 3L_7065131_SNP [dm6]	C	T	3.502e^-4	0.741	INTRON CG8641
3L	17440456	3L_17440456_SNP [dm3] 3L_17447356_SNP [dm6]	G	A	3.504e^-4	0.741	INTRON CG18265
3R	10122461	3R_10122461_SNP [dm3] 3R_14296739_SNP [dm6]	A	G	3.506e^-4	0.741	INTRON CG12207
X	11844826	X_11844826_SNP [dm3] X_11950793_SNP [dm6]	G	C	3.508e^-4	0.741	INTRON cac
2L	9953449	2L_9953449_SNP [dm3] 2L_9953449_SNP [dm6]	T	A	3.509e^-4	0.741	SYNONYMOUS_CODING CG13126 UPSTREAM CG4709	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13345018	2R_13345018_SNP [dm3] 2R_17457513_SNP [dm6]	C	T	3.513e^-4	0.741	UPSTREAM CG14478 DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
3L	16556338	3L_16556338_SNP [dm3] 3L_16563238_SNP [dm6]	T	A	3.513e^-4	0.741	DOWNSTREAM Mipp1 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	15051967	2L_15051967_SNP [dm3] 2L_15051967_SNP [dm6]	G	A	3.517e^-4	0.741	SYNONYMOUS_CODING ck	regulatory region REDfly_CRMs
3R	13229928	3R_13229928_SNP [dm3] 3R_17404206_SNP [dm6]	G	A	3.538e^-4	0.744	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
X	13584606	X_13584606_INS [dm3] X_13690573_INS [dm6]	A	AAGAAA	3.546e^-4	0.744	INTRON CG9940
3L	20749691	3L_20749691_SNP [dm3] 3L_20756591_SNP [dm6]	A	T	3.557e^-4	0.744	UPSTREAM CG33912 INTERGENIC
2R	18212484	2R_18212484_SNP [dm3] 2R_22324979_SNP [dm6]	G	A	3.561e^-4	0.744	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
2R	12995974	2R_12995974_SNP [dm3] 2R_17108469_SNP [dm6]	C	A	3.566e^-4	0.744	UPSTREAM CG15611 DOWNSTREAM CG30456 INTERGENIC
3L	13790656	3L_13790656_SNP [dm3] 3L_13797556_SNP [dm6]	G	A	3.574e^-4	0.744	INTRON bru-3
2R	4672313	2R_4672313_SNP [dm3] 2R_8784808_SNP [dm6]	C	A	3.574e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15636904	3R_15636904_SNP [dm3] 3R_19811182_SNP [dm6]	G	A	3.577e^-4	0.744	INTRON bnl
2R	14362321	2R_14362321_SNP [dm3] 2R_18474816_SNP [dm6]	G	A	3.580e^-4	0.744	INTRON CG30116
X	3137273	X_3137273_DEL [dm3] X_3243240_DEL [dm6]	AA	A	3.585e^-4	0.744	DOWNSTREAM ng1 & 1 other INTRON dnc
3R	21455530	3R_21455530_SNP [dm3] 3R_25629808_SNP [dm6]	T	A	3.593e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	17908276	3R_17908276_SNP [dm3] 3R_22082554_SNP [dm6]	C	T	3.614e^-4	0.744	INTRON CG13408
3L	1218839	3L_1218839_SNP [dm3] 3L_1218839_SNP [dm6]	A	C	3.622e^-4	0.744	UPSTREAM LysP INTRON mwh
3R	9646303	3R_9646303_SNP [dm3] 3R_13820581_SNP [dm6]	A	T	3.624e^-4	0.744	INTERGENIC
2R	13341699	2R_13341699_SNP [dm3] 2R_17454194_SNP [dm6]	A	G	3.625e^-4	0.744	INTRON CG10764
3L	8383456	3L_8383456_SNP [dm3] 3L_8390356_SNP [dm6]	T	C	3.625e^-4	0.744	UTR_3_PRIME ImpE1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20147093	X_20147093_SNP [dm3] X_20276067_SNP [dm6]	T	A	3.626e^-4	0.744	INTERGENIC
3R	17908266	3R_17908266_SNP [dm3] 3R_22082544_SNP [dm6]	A	T	3.632e^-4	0.744	INTRON CG13408
3R	2240173	3R_2240173_SNP [dm3] 3R_6414451_SNP [dm6]	T	G	3.637e^-4	0.744	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5695765	2L_5695765_SNP [dm3] 2L_5695765_SNP [dm6]	A	G	3.646e^-4	0.744	INTERGENIC
2R	14964580	2R_14964580_SNP [dm3] 2R_19077075_SNP [dm6]	C	T	3.655e^-4	0.744	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
2R	14965135	2R_14965135_SNP [dm3] 2R_19077630_SNP [dm6]	C	T	3.655e^-4	0.744	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
X	9476185	X_9476185_SNP [dm3] X_9582152_SNP [dm6]	G	A	3.660e^-4	0.744	UPSTREAM CR45540 INTERGENIC
2R	9664326	2R_9664326_SNP [dm3] 2R_13776821_SNP [dm6]	C	T	3.670e^-4	0.744	INTRON Cpr50Ca
3R	15325198	3R_15325198_INS [dm3] 3R_19499476_INS [dm6]	A	AA	3.670e^-4	0.744	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	10853117	X_10853117_SNP [dm3] X_10959084_SNP [dm6]	C	G	3.670e^-4	0.744	INTRON Myo10A
3R	20822254	3R_20822254_SNP [dm3] 3R_24996532_SNP [dm6]	T	A	3.676e^-4	0.744	INTRON tnc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	9476418	X_9476418_SNP [dm3] X_9582385_SNP [dm6]	C	G	3.677e^-4	0.744	UPSTREAM CR45540 INTERGENIC
3R	21790364	3R_21790364_SNP [dm3] 3R_25964642_SNP [dm6]	C	A	3.682e^-4	0.744	SYNONYMOUS_CODING boss	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24607568	3R_24607568_SNP [dm3] 3R_28781846_SNP [dm6]	A	G	3.683e^-4	0.744	INTERGENIC
3R	21889973	3R_21889973_SNP [dm3] 3R_26064251_SNP [dm6]	C	T	3.684e^-4	0.744	INTERGENIC
2L	3398061	2L_3398061_SNP [dm3] 2L_3398061_SNP [dm6]	A	T	3.685e^-4	0.744	START_GAINED CG34175 UTR_5_PRIME CG34175 UPSTREAM CR44792
3L	7222952	3L_7222952_SNP [dm3] 3L_7229852_SNP [dm6]	T	C	3.688e^-4	0.744	INTERGENIC
3L	7222953	3L_7222953_SNP [dm3] 3L_7229853_SNP [dm6]	G	T	3.688e^-4	0.744	INTERGENIC
2R	18023727	2R_18023727_INS [dm3] 2R_22136222_INS [dm6]	T	TATAT	3.696e^-4	0.744	UPSTREAM a INTERGENIC
2L	12760060	2L_12760060_SNP [dm3] 2L_12760060_SNP [dm6]	T	A	3.696e^-4	0.744	DOWNSTREAM CG15483 INTERGENIC
X	9476371	X_9476371_SNP [dm3] X_9582338_SNP [dm6]	T	C	3.706e^-4	0.744	UPSTREAM CR45540 INTERGENIC
3L	6801029	3L_6801029_SNP [dm3] 3L_6807929_SNP [dm6]	G	C	3.708e^-4	0.744	INTERGENIC
3R	13135929	3R_13135929_SNP [dm3] 3R_17310207_SNP [dm6]	C	G	3.712e^-4	0.744	INTERGENIC
2L	3899592	2L_3899592_SNP [dm3] 2L_3899592_SNP [dm6]	C	T	3.713e^-4	0.744	INTRON capu
2R	13996704	2R_13996704_SNP [dm3] 2R_18109199_SNP [dm6]	A	T	3.717e^-4	0.744	UPSTREAM CG5756 & 1 other INTERGENIC
2R	8500483	2R_8500483_DEL [dm3] 2R_12612978_DEL [dm6]	CC	C	3.717e^-4	0.744	DOWNSTREAM Amph INTRON Galphaq & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2R	17145518	2R_17145518_DEL [dm3] 2R_21258013_DEL [dm6]	TAAGTTCCTGAAAGCG...	T	3.719e^-4	0.744	SPLICE_SITE_REGION Rgk3 INTRON Rgk3
X	11056078	X_11056078_DEL [dm3] X_11162045_DEL [dm6]	TT	T	3.720e^-4	0.744	INTRON Dlic	TF binding site mE1_TFBS_sens
3R	8268696	3R_8268696_SNP [dm3] 3R_12442974_SNP [dm6]	C	A	3.723e^-4	0.744	UPSTREAM Desat1 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19090035	3R_19090035_SNP [dm3] 3R_23264313_SNP [dm6]	A	G	3.731e^-4	0.744	UTR_3_PRIME orb DOWNSTREAM orb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23363231	3R_23363231_SNP [dm3] 3R_27537509_SNP [dm6]	A	T	3.733e^-4	0.744	UPSTREAM CR44288 EXON CR44289
3R	24938557	3R_24938557_INS [dm3] 3R_29112835_INS [dm6]	C	CTCTC	3.733e^-4	0.744	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12397062	X_12397062_MNP [dm3] X_12503029_MNP [dm6]	ATG	TAT	3.737e^-4	0.744	INTRON CG2556
3L	15190922	3L_15190922_SNP [dm3] 3L_15197822_SNP [dm6]	G	A	3.740e^-4	0.744	INTERGENIC
3L	19969516	3L_19969516_SNP [dm3] 3L_19976416_SNP [dm6]	A	C	3.741e^-4	0.744	INTRON Ac76E
3L	16622612	3L_16622612_SNP [dm3] 3L_16629512_SNP [dm6]	C	T	3.743e^-4	0.744	INTRON Abl
3L	2654335	3L_2654335_SNP [dm3] 3L_2654335_SNP [dm6]	G	A	3.751e^-4	0.744	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup
2L	16009717	2L_16009717_SNP [dm3] 2L_16009717_SNP [dm6]	A	T	3.754e^-4	0.744	INTRON beat-Ic
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	3.755e^-4	0.744	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2L	6346585	2L_6346585_SNP [dm3] 2L_6346585_SNP [dm6]	C	G	3.759e^-4	0.744	UTR_3_PRIME CG9497 DOWNSTREAM Cpr
3L	350837	3L_350837_DEL [dm3] 3L_350837_DEL [dm6]	TT	T	3.763e^-4	0.744	UPSTREAM Ptpmeg INTRON Ptpmeg
3R	1518866	3R_1518866_SNP [dm3] 3R_5693144_SNP [dm6]	C	T	3.768e^-4	0.744	NON_SYNONYMOUS_CODING CG2104 INTRON plx
3R	8151847	3R_8151847_SNP [dm3] 3R_12326125_SNP [dm6]	C	T	3.769e^-4	0.744	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	12853304	2R_12853304_SNP [dm3] 2R_16965799_SNP [dm6]	A	G	3.776e^-4	0.744	DOWNSTREAM CR44376 INTERGENIC
3R	12469778	3R_12469778_SNP [dm3] 3R_16644056_SNP [dm6]	T	C	3.780e^-4	0.744	SYNONYMOUS_CODING CG10326 DOWNSTREAM nonA-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	2277460	X_2277460_DEL [dm3] X_2383427_DEL [dm6]	AA	A	3.782e^-4	0.744	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5001535	3R_5001535_SNP [dm3] 3R_9175813_SNP [dm6]	A	G	3.793e^-4	0.744	INTRON pum
3R	14958620	3R_14958620_SNP [dm3] 3R_19132898_SNP [dm6]	G	A	3.794e^-4	0.744	SYNONYMOUS_CODING Cyp12a5 DOWNSTREAM CG6040	TF binding site BDTNP1_TFBS_twi
2L	4996938	2L_4996938_SNP [dm3] 2L_4996938_SNP [dm6]	C	A	3.796e^-4	0.744	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3R	9986173	3R_9986173_SNP [dm3] 3R_14160451_SNP [dm6]	A	G	3.801e^-4	0.744	UPSTREAM CG31327 INTERGENIC
2L	15352577	2L_15352577_SNP [dm3] 2L_15352577_SNP [dm6]	G	A	3.803e^-4	0.744	INTERGENIC
3R	14170957	3R_14170957_SNP [dm3] 3R_18345235_SNP [dm6]	C	A	3.803e^-4	0.744	INTRON CG15803
2R	6801279	2R_6801279_SNP [dm3] 2R_10913774_SNP [dm6]	A	G	3.817e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7727987	3R_7727987_SNP [dm3] 3R_11902265_SNP [dm6]	A	G	3.846e^-4	0.744	INTRON Cad87A
3R	16647621	3R_16647621_SNP [dm3] 3R_20821899_SNP [dm6]	C	A	3.847e^-4	0.744	UPSTREAM RpS20 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	9016124	3L_9016124_SNP [dm3] 3L_9023024_SNP [dm6]	G	A	3.851e^-4	0.744	INTERGENIC
2L	17308530	2L_17308530_SNP [dm3] 2L_17308530_SNP [dm6]	G	C	3.858e^-4	0.744	INTERGENIC
2L	14261742	2L_14261742_SNP [dm3] 2L_14261742_SNP [dm6]	G	A	3.867e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	11056255	X_11056255_SNP [dm3] X_11162222_SNP [dm6]	G	T	3.868e^-4	0.744	INTRON Dlic
3L	5637241	3L_5637241_SNP [dm3] 3L_5644141_SNP [dm6]	C	A	3.872e^-4	0.744	UTR_5_PRIME Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15977469	3L_15977469_SNP [dm3] 3L_15984369_SNP [dm6]	T	G	3.874e^-4	0.744	UTR_3_PRIME DNApol-delta DOWNSTREAM Arl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19179258	2R_19179258_SNP [dm3] 2R_23291735_SNP [dm6]	T	A	3.880e^-4	0.744	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9410635	3L_9410635_SNP [dm3] 3L_9417535_SNP [dm6]	C	G	3.881e^-4	0.744	UPSTREAM CG3982 INTRON CG3967
3R	814548	3R_814548_SNP [dm3] 3R_4988826_SNP [dm6]	T	A	3.884e^-4	0.744	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	19390757	X_19390757_SNP [dm3] X_19496724_SNP [dm6]	T	C	3.887e^-4	0.744	UTR_5_PRIME Pfrx UPSTREAM CR44340 INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9139044	2R_9139044_SNP [dm3] 2R_13251539_SNP [dm6]	C	T	3.888e^-4	0.744	SYNONYMOUS_CODING CG4712 UTR_5_PRIME CG4712 DOWNSTREAM CG4714
3R	21790980	3R_21790980_SNP [dm3] 3R_25965258_SNP [dm6]	C	T	3.890e^-4	0.744	SYNONYMOUS_CODING boss	TF binding site mE1_TFBS_inv
2L	3782483	2L_3782483_SNP [dm3] 2L_3782483_SNP [dm6]	C	T	3.895e^-4	0.744	SYNONYMOUS_CODING bowl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4020468	X_4020468_SNP [dm3] X_4126435_SNP [dm6]	T	C	3.896e^-4	0.744	UTR_3_PRIME tyf DOWNSTREAM tyf
3R	3220213	3R_3220213_SNP [dm3] 3R_7394491_SNP [dm6]	A	T	3.898e^-4	0.744	INTERGENIC
3L	15657917	3L_15657917_SNP [dm3] 3L_15664817_SNP [dm6]	C	T	3.899e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	18916535	3R_18916535_SNP [dm3] 3R_23090813_SNP [dm6]	G	C	3.901e^-4	0.744	UPSTREAM CG6726 & 1 other INTRON CG13830
3R	1755865	3R_1755865_SNP [dm3] 3R_5930143_SNP [dm6]	C	T	3.904e^-4	0.744	INTRON CG34113
2L	7761707	2L_7761707_SNP [dm3] 2L_7761707_SNP [dm6]	A	G	3.907e^-4	0.744	INTRON CG7196
X	19003743	X_19003743_SNP [dm3] X_19109710_SNP [dm6]	G	T	3.907e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16674618	2L_16674618_SNP [dm3] 2L_16674618_SNP [dm6]	A	G	3.908e^-4	0.744	INTRON Trpgamma
3L	15004173	3L_15004173_SNP [dm3] 3L_15011073_SNP [dm6]	G	T	3.910e^-4	0.744	INTRON Reck	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25834120	3R_25834120_SNP [dm3] 3R_30008398_SNP [dm6]	T	A	3.912e^-4	0.744	INTRON Nlp & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	12066932	3L_12066932_SNP [dm3] 3L_12073832_SNP [dm6]	A	T	3.931e^-4	0.744	INTRON Sema-5c
2R	8555183	2R_8555183_SNP [dm3] 2R_12667678_SNP [dm6]	C	T	3.933e^-4	0.744	INTRON nemy
3R	8037956	3R_8037956_SNP [dm3] 3R_12212234_SNP [dm6]	C	T	3.936e^-4	0.744	INTERGENIC
2L	7769477	2L_7769477_DEL [dm3] 2L_7769477_DEL [dm6]	TTG	T	3.936e^-4	0.744	INTRON CG7191
2R	19167173	2R_19167173_SNP [dm3] 2R_23279650_SNP [dm6]	T	C	3.944e^-4	0.744	INTERGENIC
3R	4582064	3R_4582064_DEL [dm3] 3R_8756342_DEL [dm6]	AGTAATACAAGTATCTAAAG...	A	3.955e^-4	0.744	DOWNSTREAM CR44228 INTRON CG11768 & 1 other
3L	16522316	3L_16522316_SNP [dm3] 3L_16529216_SNP [dm6]	G	T	3.969e^-4	0.744	INTRON CG43373
3L	18604808	3L_18604808_SNP [dm3] 3L_18611708_SNP [dm6]	A	G	3.991e^-4	0.744	UTR_3_PRIME CG32201 UPSTREAM CG32199 INTRON CG4174 & 1 other
3R	8164583	3R_8164583_SNP [dm3] 3R_12338861_SNP [dm6]	T	C	3.991e^-4	0.744	INTRON CR44941
3R	1770744	3R_1770744_SNP [dm3] 3R_5945022_SNP [dm6]	T	A	3.991e^-4	0.744	INTRON CG34113
2L	2629944	2L_2629944_SNP [dm3] 2L_2629944_SNP [dm6]	C	T	3.991e^-4	0.744	INTERGENIC
3R	5001394	3R_5001394_SNP [dm3] 3R_9175672_SNP [dm6]	C	A	3.994e^-4	0.744	INTRON pum
3R	11980368	3R_11980368_SNP [dm3] 3R_16154646_SNP [dm6]	C	G	3.997e^-4	0.744	UPSTREAM CG6006 INTERGENIC
3R	5443071	3R_5443071_SNP [dm3] 3R_9617349_SNP [dm6]	T	A	4.000e^-4	0.744	INTRON CG8312
2L	5412487	2L_5412487_SNP [dm3] 2L_5412487_SNP [dm6]	A	G	4.001e^-4	0.744	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1691306	2L_1691306_SNP [dm3] 2L_1691306_SNP [dm6]	T	C	4.010e^-4	0.744	INTRON chinmo

By genomic position
Variant impact
Gene name

Cuticul_n_C28 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results