DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.130e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.06294

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.9269	0.0516

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2296 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	3427966	3R_3427966_SNP [dm3] 3R_7602244_SNP [dm6]	T	C	1.860e^-6	0.662	INTRON CG34127
2L	15065123	2L_15065123_SNP [dm3] 2L_15065123_SNP [dm6]	A	C	2.010e^-6	0.662	INTRON vas & 1 other
2L	15098062	2L_15098062_SNP [dm3] 2L_15098062_SNP [dm6]	T	C	2.382e^-6	0.662	INTERGENIC
2L	15094905	2L_15094905_SNP [dm3] 2L_15094905_SNP [dm6]	A	C	2.771e^-6	0.662	NON_SYNONYMOUS_CODING CG15270
2L	14363628	2L_14363628_SNP [dm3] 2L_14363628_SNP [dm6]	C	A	2.816e^-6	0.662	NON_SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14376264	2L_14376264_SNP [dm3] 2L_14376264_SNP [dm6]	G	C	2.986e^-6	0.662	INTERGENIC	TF binding site mE1_TFBS_zfh1
2R	7294173	2R_7294173_SNP [dm3] 2R_11406668_SNP [dm6]	G	A	3.448e^-6	0.662	SYNONYMOUS_CODING CG7759
3R	26940651	3R_26940651_DEL [dm3] 3R_31114929_DEL [dm6]	CCC	C	3.742e^-6	0.662	INTERGENIC
3R	3262179	3R_3262179_INS [dm3] 3R_7436457_INS [dm6]	T	TTTAAGT	4.171e^-6	0.662	INTERGENIC
3R	3156422	3R_3156422_SNP [dm3] 3R_7330700_SNP [dm6]	A	C	4.244e^-6	0.662	UPSTREAM CR44337 INTERGENIC
2L	2588829	2L_2588829_SNP [dm3] 2L_2588829_SNP [dm6]	T	G	4.525e^-6	0.662	INTERGENIC
2L	3279399	2L_3279399_SNP [dm3] 2L_3279399_SNP [dm6]	A	G	5.184e^-6	0.662	START_GAINED CG3332 UTR_5_PRIME CG3332 INTRON CG3332
3R	26193059	3R_26193059_SNP [dm3] 3R_30367337_SNP [dm6]	A	C	5.557e^-6	0.662	UTR_3_PRIME hdc
3L	8314568	3L_8314568_SNP [dm3] 3L_8321468_SNP [dm6]	A	G	6.068e^-6	0.662	INTRON CG13670	TF binding site mE1_TFBS_cad
3R	23549190	3R_23549190_SNP [dm3] 3R_27723468_SNP [dm6]	A	G	6.454e^-6	0.662	INTERGENIC
2L	15040215	2L_15040215_SNP [dm3] 2L_15040215_SNP [dm6]	G	A	7.121e^-6	0.662	SYNONYMOUS_CODING Su_H_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	16902696	X_16902696_INS [dm3] X_17008663_INS [dm6]	C	CTC	7.190e^-6	0.662	INTRON CG45002
3R	4586152	3R_4586152_SNP [dm3] 3R_8760430_SNP [dm6]	G	A	7.396e^-6	0.662	INTRON CG11768 & 1 other
2L	793797	2L_793797_SNP [dm3] 2L_793797_SNP [dm6]	C	A	7.857e^-6	0.662	INTERGENIC
2L	1357213	2L_1357213_SNP [dm3] 2L_1357213_SNP [dm6]	G	T	7.894e^-6	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8825149	3L_8825149_SNP [dm3] 3L_8832049_SNP [dm6]	G	C	7.976e^-6	0.662	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12600086	2L_12600086_SNP [dm3] 2L_12600086_SNP [dm6]	C	T	8.060e^-6	0.662	INTRON nub
3L	8825177	3L_8825177_SNP [dm3] 3L_8832077_SNP [dm6]	A	C	8.116e^-6	0.662	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	15991076	2L_15991076_SNP [dm3] 2L_15991076_SNP [dm6]	A	G	8.635e^-6	0.675	INTERGENIC
3L	11849320	3L_11849320_INS [dm3] 3L_11856220_INS [dm6]	T	TT	9.777e^-6	0.705	INTRON CG44837
3L	8820905	3L_8820905_SNP [dm3] 3L_8827805_SNP [dm6]	A	C	9.834e^-6	0.705	UTR_5_PRIME dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8078031	3L_8078031_SNP [dm3] 3L_8084931_SNP [dm6]	T	C	1.072e^-5	0.705	INTRON Ect4
2L	18135133	2L_18135133_SNP [dm3] 2L_18135133_SNP [dm6]	A	G	1.155e^-5	0.705	INTRON kel
2R	7294182	2R_7294182_SNP [dm3] 2R_11406677_SNP [dm6]	A	G	1.165e^-5	0.705	SYNONYMOUS_CODING CG7759
X	16875398	X_16875398_SNP [dm3] X_16981365_SNP [dm6]	A	T	1.176e^-5	0.705	INTRON CG45002
3L	9002826	3L_9002826_SNP [dm3] 3L_9009726_SNP [dm6]	G	A	1.181e^-5	0.705	SYNONYMOUS_CODING CG5194	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15094996	2L_15094996_SNP [dm3] 2L_15094996_SNP [dm6]	A	G	1.226e^-5	0.705	SYNONYMOUS_CODING CG15270
3R	3482214	3R_3482214_SNP [dm3] 3R_7656492_SNP [dm6]	G	C	1.280e^-5	0.705	INTERGENIC
3R	22004078	3R_22004078_SNP [dm3] 3R_26178356_SNP [dm6]	A	G	1.333e^-5	0.705	INTRON CG31323
X	8826108	X_8826108_SNP [dm3] X_8932075_SNP [dm6]	A	G	1.374e^-5	0.705	INTRON rdgA
3R	4707203	3R_4707203_SNP [dm3] 3R_8881481_SNP [dm6]	A	T	1.418e^-5	0.705	INTRON pyd
3L	3130947	3L_3130947_SNP [dm3] 3L_3130947_SNP [dm6]	A	T	1.436e^-5	0.705	SYNONYMOUS_CODING CG11537	TF binding site mE1_TFBS_Kr
3L	18595907	3L_18595907_SNP [dm3] 3L_18602807_SNP [dm6]	T	A	1.464e^-5	0.705	UPSTREAM CG4174 & 1 other INTRON CG4174 & 1 other
2L	15098188	2L_15098188_SNP [dm3] 2L_15098188_SNP [dm6]	T	C	1.511e^-5	0.705	INTERGENIC
2R	7294179	2R_7294179_SNP [dm3] 2R_11406674_SNP [dm6]	C	T	1.534e^-5	0.705	SYNONYMOUS_CODING CG7759
3R	21999683	3R_21999683_SNP [dm3] 3R_26173961_SNP [dm6]	A	T	1.600e^-5	0.705	INTRON CG31323
3R	6722831	3R_6722831_SNP [dm3] 3R_10897109_SNP [dm6]	C	T	1.691e^-5	0.705	DOWNSTREAM Leash & 1 other EXON CR45577	TF binding site BDTNP1_TFBS_sna
3R	4585909	3R_4585909_SNP [dm3] 3R_8760187_SNP [dm6]	C	T	1.807e^-5	0.705	INTRON CG11768 & 1 other
3L	4127120	3L_4127120_SNP [dm3] 3L_4127120_SNP [dm6]	T	C	1.881e^-5	0.705	NON_SYNONYMOUS_CODING ens
2R	11920828	2R_11920828_SNP [dm3] 2R_16033323_SNP [dm6]	A	G	1.922e^-5	0.705	INTRON SP2353
3R	26216927	3R_26216927_SNP [dm3] 3R_30391205_SNP [dm6]	T	C	1.967e^-5	0.705	DOWNSTREAM Fer2LCH INTERGENIC
3R	4666107	3R_4666107_SNP [dm3] 3R_8840385_SNP [dm6]	T	G	2.004e^-5	0.705	NON_SYNONYMOUS_CODING pyd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23473366	3R_23473366_SNP [dm3] 3R_27647644_SNP [dm6]	G	A	2.022e^-5	0.705	UPSTREAM tau INTRON tau
X	15273582	X_15273582_SNP [dm3] X_15379549_SNP [dm6]	G	C	2.031e^-5	0.705	UPSTREAM acj6 DOWNSTREAM CG9164 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12623261	2L_12623261_SNP [dm3] 2L_12623261_SNP [dm6]	T	G	2.116e^-5	0.705	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5791824	2L_5791824_SNP [dm3] 2L_5791824_SNP [dm6]	C	A	2.128e^-5	0.705	INTRON CG9171
X	15193375	X_15193375_SNP [dm3] X_15299342_SNP [dm6]	T	A	2.129e^-5	0.705	UTR_5_PRIME gce INTRON gce	TF binding site BDTNP1_TFBS_dl
3R	21999677	3R_21999677_SNP [dm3] 3R_26173955_SNP [dm6]	T	A	2.145e^-5	0.705	INTRON CG31323
3R	9378630	3R_9378630_SNP [dm3] 3R_13552908_SNP [dm6]	T	G	2.156e^-5	0.705	INTERGENIC
3R	26962794	3R_26962794_SNP [dm3] 3R_31137072_SNP [dm6]	G	A	2.212e^-5	0.705	INTRON Gycbeta100B
2L	11427797	2L_11427797_SNP [dm3] 2L_11427797_SNP [dm6]	G	T	2.258e^-5	0.705	INTERGENIC
2L	15427106	2L_15427106_SNP [dm3] 2L_15427106_SNP [dm6]	G	A	2.285e^-5	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18653530	2R_18653530_SNP [dm3] 2R_22766025_SNP [dm6]	A	C	2.358e^-5	0.705	DOWNSTREAM CG13527 INTRON CG42260
3R	21999613	3R_21999613_DEL [dm3] 3R_26173891_DEL [dm6]	TAATGACCAGTACACAGG...	T	2.366e^-5	0.705	INTRON CG31323
3R	21999742	3R_21999742_SNP [dm3] 3R_26174020_SNP [dm6]	G	A	2.400e^-5	0.705	INTRON CG31323
X	13481441	X_13481441_SNP [dm3] X_13587408_SNP [dm6]	C	A	2.416e^-5	0.705	INTRON Tango13
3R	5662272	3R_5662272_SNP [dm3] 3R_9836550_SNP [dm6]	A	C	2.430e^-5	0.705	INTRON Teh1
3L	8826226	3L_8826226_SNP [dm3] 3L_8833126_SNP [dm6]	T	G	2.508e^-5	0.705	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21998950	3R_21998950_SNP [dm3] 3R_26173228_SNP [dm6]	A	G	2.513e^-5	0.705	INTRON CG31323
3L	8660124	3L_8660124_SNP [dm3] 3L_8667024_SNP [dm6]	G	T	2.525e^-5	0.705	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11161454	3L_11161454_SNP [dm3] 3L_11168354_SNP [dm6]	G	A	2.540e^-5	0.705	SYNONYMOUS_CODING wls	TF binding site BDTNP1_TFBS_twi
2L	5474493	2L_5474493_SNP [dm3] 2L_5474493_SNP [dm6]	G	A	2.555e^-5	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3R	25194224	3R_25194224_SNP [dm3] 3R_29368502_SNP [dm6]	A	C	2.557e^-5	0.705	UPSTREAM CG45546 INTERGENIC
3R	6566857	3R_6566857_SNP [dm3] 3R_10741135_SNP [dm6]	A	G	2.635e^-5	0.715	INTRON TkR86C
3L	7486865	3L_7486865_SNP [dm3] 3L_7493765_SNP [dm6]	A	G	2.669e^-5	0.715	SYNONYMOUS_CODING Cyp4d8 DOWNSTREAM Cyp316a1
2L	16435544	2L_16435544_SNP [dm3] 2L_16435544_SNP [dm6]	G	A	2.832e^-5	0.743	INTRON CG5888
2L	18447480	2L_18447480_SNP [dm3] 2L_18447480_SNP [dm6]	A	C	2.890e^-5	0.743	NON_SYNONYMOUS_CODING ncm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6711479	3R_6711479_SNP [dm3] 3R_10885757_SNP [dm6]	G	A	2.932e^-5	0.743	UTR_5_PRIME Leash UPSTREAM CG14696	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26216585	3R_26216585_SNP [dm3] 3R_30390863_SNP [dm6]	A	G	3.006e^-5	0.743	DOWNSTREAM Fer2LCH INTERGENIC
3R	4600002	3R_4600002_SNP [dm3] 3R_8774280_SNP [dm6]	T	C	3.031e^-5	0.743	DOWNSTREAM Pif1B & 2 others INTERGENIC
2L	15889543	2L_15889543_SNP [dm3] 2L_15889543_SNP [dm6]	G	A	3.039e^-5	0.743	NON_SYNONYMOUS_CODING Tep1 DOWNSTREAM CR31824
3R	10692944	3R_10692944_SNP [dm3] 3R_14867222_SNP [dm6]	A	T	3.095e^-5	0.743	INTRON btsz
3L	17106201	3L_17106201_SNP [dm3] 3L_17113101_SNP [dm6]	T	G	3.100e^-5	0.743	INTRON Rbp6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3529547	3L_3529547_SNP [dm3] 3L_3529547_SNP [dm6]	T	C	3.284e^-5	0.743	INTRON Eip63E
2L	5099793	2L_5099793_SNP [dm3] 2L_5099793_SNP [dm6]	C	T	3.312e^-5	0.743	NON_SYNONYMOUS_CODING CG8680 DOWNSTREAM CG4230	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12598928	2L_12598928_SNP [dm3] 2L_12598928_SNP [dm6]	C	T	3.330e^-5	0.743	INTRON nub
3L	1386271	3L_1386271_SNP [dm3] 3L_1386271_SNP [dm6]	A	T	3.338e^-5	0.743	SYNONYMOUS_CODING ru INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	2589274	2L_2589274_SNP [dm3] 2L_2589274_SNP [dm6]	C	T	3.346e^-5	0.743	INTERGENIC
3R	26940929	3R_26940929_DEL [dm3] 3R_31115207_DEL [dm6]	TGGAAATATTACT...	T	3.393e^-5	0.743	INTERGENIC
3R	4600000	3R_4600000_SNP [dm3] 3R_8774278_SNP [dm6]	T	A	3.480e^-5	0.743	DOWNSTREAM Pif1B & 2 others INTERGENIC
3R	19059172	3R_19059172_SNP [dm3] 3R_23233450_SNP [dm6]	A	G	3.492e^-5	0.743	SPLICE_SITE_REGION CG4467 INTRON CG4467	TF binding site mE1_TFBS_cad
3R	19059181	3R_19059181_SNP [dm3] 3R_23233459_SNP [dm6]	T	G	3.492e^-5	0.743	INTRON CG4467	TF binding site mE1_TFBS_cad
2L	3280132	2L_3280132_SNP [dm3] 2L_3280132_SNP [dm6]	G	A	3.493e^-5	0.743	UPSTREAM CG3332 INTRON CG3332
2L	2604839	2L_2604839_SNP [dm3] 2L_2604839_SNP [dm6]	G	C	3.589e^-5	0.743	INTERGENIC
3R	22001174	3R_22001174_SNP [dm3] 3R_26175452_SNP [dm6]	C	A	3.605e^-5	0.743	INTRON CG31323
3R	22001175	3R_22001175_SNP [dm3] 3R_26175453_SNP [dm6]	A	T	3.605e^-5	0.743	INTRON CG31323
X	11181478	X_11181478_SNP [dm3] X_11287445_SNP [dm6]	T	A	3.797e^-5	0.764	INTRON CG44422
3L	12566246	3L_12566246_SNP [dm3] 3L_12573146_SNP [dm6]	T	C	3.809e^-5	0.764	UPSTREAM sowah INTERGENIC
2L	5474609	2L_5474609_SNP [dm3] 2L_5474609_SNP [dm6]	T	G	3.859e^-5	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2L	16242019	2L_16242019_SNP [dm3] 2L_16242019_SNP [dm6]	G	A	3.895e^-5	0.764	START_GAINED CG42818 UTR_5_PRIME CG42818 DOWNSTREAM CG42817
2L	15095276	2L_15095276_SNP [dm3] 2L_15095276_SNP [dm6]	C	G	3.994e^-5	0.764	INTRON CG15270
2L	11427789	2L_11427789_INS [dm3] 2L_11427789_INS [dm6]	A	AA	4.050e^-5	0.764	INTERGENIC
X	11181479	X_11181479_SNP [dm3] X_11287446_SNP [dm6]	T	A	4.095e^-5	0.764	INTRON CG44422
3R	11283329	3R_11283329_SNP [dm3] 3R_15457607_SNP [dm6]	C	A	4.253e^-5	0.764	INTRON AdamTS-A
3R	4576844	3R_4576844_SNP [dm3] 3R_8751122_SNP [dm6]	T	A	4.263e^-5	0.764	UTR_5_PRIME CG34135 UTR_3_PRIME CG11768 INTRON CG8223
X	11181473	X_11181473_MNP [dm3] X_11287440_MNP [dm6]	AGG	TAC	4.288e^-5	0.764	INTRON CG44422
2R	19795291	2R_19795291_SNP [dm3] 2R_23907768_SNP [dm6]	C	A	4.309e^-5	0.764	UTR_5_PRIME kcc UPSTREAM Nap1 & 1 other DOWNSTREAM CR44806	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8225435	3L_8225435_SNP [dm3] 3L_8232335_SNP [dm6]	T	C	4.328e^-5	0.764	DOWNSTREAM CR43953 INTRON CG7213
3R	7318218	3R_7318218_SNP [dm3] 3R_11492496_SNP [dm6]	C	A	4.349e^-5	0.764	INTERGENIC
2R	19795298	2R_19795298_SNP [dm3] 2R_23907775_SNP [dm6]	A	T	4.355e^-5	0.764	UTR_5_PRIME kcc UPSTREAM Nap1 & 1 other DOWNSTREAM CR44806	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4670281	3R_4670281_SNP [dm3] 3R_8844559_SNP [dm6]	A	G	4.443e^-5	0.764	INTRON pyd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9372778	2L_9372778_SNP [dm3] 2L_9372778_SNP [dm6]	A	G	4.465e^-5	0.764	UTR_3_PRIME Shawl DOWNSTREAM Shawl INTRON CR43865
2R	4526554	2R_4526554_SNP [dm3] 2R_8639049_SNP [dm6]	C	A	4.553e^-5	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18504259	3L_18504259_SNP [dm3] 3L_18511159_SNP [dm6]	A	T	4.570e^-5	0.764	INTERGENIC
3R	10691427	3R_10691427_DEL [dm3] 3R_14865705_DEL [dm6]	AAGGGGTTAAGT...	A	4.660e^-5	0.764	INTRON btsz
X	3987864	X_3987864_DEL [dm3] X_4093831_DEL [dm6]	GGTGCCACG	G	4.696e^-5	0.764	INTERGENIC
3R	25552777	3R_25552777_SNP [dm3] 3R_29727055_SNP [dm6]	C	T	4.711e^-5	0.764	NON_SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
3R	26216620	3R_26216620_SNP [dm3] 3R_30390898_SNP [dm6]	A	G	4.722e^-5	0.764	DOWNSTREAM Fer2LCH INTERGENIC
3R	26216634	3R_26216634_SNP [dm3] 3R_30390912_SNP [dm6]	G	T	4.722e^-5	0.764	DOWNSTREAM Fer2LCH INTERGENIC
2L	15986918	2L_15986918_SNP [dm3] 2L_15986918_SNP [dm6]	T	G	4.726e^-5	0.764	INTERGENIC
2L	19776712	2L_19776712_DEL [dm3] 2L_19776712_DEL [dm6]	AAATGTGTTTGCAATAAACA...	A	4.728e^-5	0.764	UTR_3_PRIME CdGAPr
3R	4570598	3R_4570598_SNP [dm3] 3R_8744876_SNP [dm6]	T	C	4.786e^-5	0.766	INTRON CG9801	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10990506	2R_10990506_DEL [dm3] 2R_15103001_DEL [dm6]	CC	C	4.876e^-5	0.766	INTERGENIC
3L	8078152	3L_8078152_SNP [dm3] 3L_8085052_SNP [dm6]	T	C	4.938e^-5	0.766	INTRON Ect4
3R	6649193	3R_6649193_SNP [dm3] 3R_10823471_SNP [dm6]	G	A	5.005e^-5	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19301615	X_19301615_SNP [dm3] X_19407582_SNP [dm6]	A	C	5.012e^-5	0.766	INTRON kek5
2L	793796	2L_793796_SNP [dm3] 2L_793796_SNP [dm6]	C	A	5.016e^-5	0.766	INTERGENIC
3R	10692957	3R_10692957_SNP [dm3] 3R_14867235_SNP [dm6]	G	C	5.023e^-5	0.766	INTRON btsz
2L	11428394	2L_11428394_SNP [dm3] 2L_11428394_SNP [dm6]	T	C	5.093e^-5	0.77	INTERGENIC
3R	22001172	3R_22001172_SNP [dm3] 3R_26175450_SNP [dm6]	T	A	5.205e^-5	0.772	INTRON CG31323
3R	1663506	3R_1663506_SNP [dm3] 3R_5837784_SNP [dm6]	T	C	5.391e^-5	0.772	NON_SYNONYMOUS_CODING CG1208	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5100564	2L_5100564_INS [dm3] 2L_5100564_INS [dm6]	T	TC	5.401e^-5	0.772	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	1905590	3R_1905590_SNP [dm3] 3R_6079868_SNP [dm6]	T	C	5.435e^-5	0.772	INTERGENIC
3L	8825113	3L_8825113_SNP [dm3] 3L_8832013_SNP [dm6]	A	T	5.532e^-5	0.772	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	25194187	3R_25194187_SNP [dm3] 3R_29368465_SNP [dm6]	A	T	5.603e^-5	0.772	UPSTREAM CG45546 INTERGENIC
2L	1626905	2L_1626905_SNP [dm3] 2L_1626905_SNP [dm6]	A	C	5.621e^-5	0.772	UPSTREAM CR44603 INTERGENIC
3L	818449	3L_818449_SNP [dm3] 3L_818449_SNP [dm6]	T	G	5.689e^-5	0.772	INTERGENIC
3R	4673415	3R_4673415_SNP [dm3] 3R_8847693_SNP [dm6]	T	A	5.743e^-5	0.772	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3280067	2L_3280067_SNP [dm3] 2L_3280067_SNP [dm6]	C	T	5.808e^-5	0.772	UPSTREAM CG3332 INTRON CG3332
2R	12969307	2R_12969307_SNP [dm3] 2R_17081802_SNP [dm6]	T	C	5.825e^-5	0.772	UTR_5_PRIME CG30460
2R	12969312	2R_12969312_SNP [dm3] 2R_17081807_SNP [dm6]	C	T	5.825e^-5	0.772	UTR_5_PRIME CG30460
3R	26216616	3R_26216616_SNP [dm3] 3R_30390894_SNP [dm6]	A	T	5.835e^-5	0.772	DOWNSTREAM Fer2LCH INTERGENIC
3R	10692958	3R_10692958_SNP [dm3] 3R_14867236_SNP [dm6]	T	C	5.863e^-5	0.772	INTRON btsz
2R	2447127	2R_2447127_SNP [dm3] 2R_6559622_SNP [dm6]	A	G	5.936e^-5	0.772	INTRON jing
3R	6622181	3R_6622181_SNP [dm3] 3R_10796459_SNP [dm6]	A	G	5.943e^-5	0.772	SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_sens
2R	13098962	2R_13098962_SNP [dm3] 2R_17211457_SNP [dm6]	T	A	5.967e^-5	0.772	INTERGENIC
3R	18523202	3R_18523202_SNP [dm3] 3R_22697480_SNP [dm6]	T	C	6.007e^-5	0.772	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
3R	18523219	3R_18523219_SNP [dm3] 3R_22697497_SNP [dm6]	T	G	6.007e^-5	0.772	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
2R	13865104	2R_13865104_SNP [dm3] 2R_17977599_SNP [dm6]	A	G	6.131e^-5	0.772	INTRON dpr13
3L	11813810	3L_11813810_SNP [dm3] 3L_11820710_SNP [dm6]	G	A	6.161e^-5	0.772	SYNONYMOUS_CODING CG11597 UPSTREAM CG5946 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16541486	2L_16541486_SNP [dm3] 2L_16541486_SNP [dm6]	T	A	6.180e^-5	0.772	INTERGENIC
2L	3279975	2L_3279975_DEL [dm3] 2L_3279975_DEL [dm6]	TGTAC	T	6.269e^-5	0.772	UPSTREAM CG3332 INTRON CG3332
3L	12662509	3L_12662509_SNP [dm3] 3L_12669409_SNP [dm6]	C	T	6.277e^-5	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18523304	3R_18523304_SNP [dm3] 3R_22697582_SNP [dm6]	A	T	6.286e^-5	0.772	SPLICE_SITE_REGION cd UPSTREAM Cyp6d4 INTRON cd
3R	23473368	3R_23473368_DEL [dm3] 3R_27647646_DEL [dm6]	TGGAT	T	6.307e^-5	0.772	UPSTREAM tau INTRON tau
2L	2588858	2L_2588858_SNP [dm3] 2L_2588858_SNP [dm6]	A	C	6.395e^-5	0.772	INTERGENIC
3R	11696842	3R_11696842_SNP [dm3] 3R_15871120_SNP [dm6]	A	G	6.409e^-5	0.772	INTRON CG31183
X	13157215	X_13157215_SNP [dm3] X_13263182_SNP [dm6]	G	T	6.456e^-5	0.772	UTR_3_PRIME HDAC4 DOWNSTREAM comt & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7822678	3L_7822678_SNP [dm3] 3L_7829578_SNP [dm6]	G	A	6.502e^-5	0.772	INTRON Pdp1
3R	19059213	3R_19059213_SNP [dm3] 3R_23233491_SNP [dm6]	A	G	6.625e^-5	0.772	INTRON CG4467	TF binding site mE1_TFBS_cad
3R	3482412	3R_3482412_SNP [dm3] 3R_7656690_SNP [dm6]	T	C	6.725e^-5	0.772	INTERGENIC
3L	21809292	3L_21809292_SNP [dm3] 3L_21816192_SNP [dm6]	A	T	6.812e^-5	0.772	INTRON eg	TF binding site mE1_TFBS_cad
3L	3529801	3L_3529801_SNP [dm3] 3L_3529801_SNP [dm6]	C	A	6.839e^-5	0.772	INTRON Eip63E
3L	16558991	3L_16558991_SNP [dm3] 3L_16565891_SNP [dm6]	C	G	6.856e^-5	0.772	UPSTREAM CG43206 INTRON Mipp1
2R	7458723	2R_7458723_SNP [dm3] 2R_11571218_SNP [dm6]	T	G	6.882e^-5	0.772	INTERGENIC
3L	7902082	3L_7902082_SNP [dm3] 3L_7908982_SNP [dm6]	T	C	6.910e^-5	0.772	INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	11368820	X_11368820_SNP [dm3] X_11474787_SNP [dm6]	A	G	6.911e^-5	0.772	INTRON CG43155
3R	4527516	3R_4527516_SNP [dm3] 3R_8701794_SNP [dm6]	C	A	6.964e^-5	0.772	INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	17023345	3R_17023345_SNP [dm3] 3R_21197623_SNP [dm6]	C	T	6.975e^-5	0.772	INTRON SNF4Agamma
2L	1357276	2L_1357276_SNP [dm3] 2L_1357276_SNP [dm6]	C	T	7.068e^-5	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22609664	3R_22609664_SNP [dm3] 3R_26783942_SNP [dm6]	C	A	7.115e^-5	0.772	UPSTREAM CG42790 INTRON CG42789
3R	22609208	3R_22609208_SNP [dm3] 3R_26783486_SNP [dm6]	A	T	7.133e^-5	0.772	UPSTREAM CG42790 DOWNSTREAM CG42789 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	10737365	3R_10737365_SNP [dm3] 3R_14911643_SNP [dm6]	C	T	7.134e^-5	0.772	INTERGENIC
2R	13761095	2R_13761095_DEL [dm3] 2R_17873590_DEL [dm6]	TGTAT	T	7.139e^-5	0.772	UPSTREAM Elk INTERGENIC
3L	8042360	3L_8042360_SNP [dm3] 3L_8049260_SNP [dm6]	A	T	7.151e^-5	0.772	INTRON nmo
3L	817374	3L_817374_SNP [dm3] 3L_817374_SNP [dm6]	G	A	7.213e^-5	0.772	INTERGENIC
3L	7822697	3L_7822697_SNP [dm3] 3L_7829597_SNP [dm6]	A	G	7.217e^-5	0.772	INTRON Pdp1
3L	22391875	3L_22391875_SNP [dm3] 3L_22398775_SNP [dm6]	C	T	7.270e^-5	0.772	INTRON Ten-m	TF binding site BDTNP1_TFBS_da
3R	4712234	3R_4712234_SNP [dm3] 3R_8886512_SNP [dm6]	C	A	7.336e^-5	0.772	INTRON pyd
3L	8314503	3L_8314503_SNP [dm3] 3L_8321403_SNP [dm6]	A	T	7.342e^-5	0.772	INTRON CG13670	TF binding site mE1_TFBS_cad
2L	2587803	2L_2587803_SNP [dm3] 2L_2587803_SNP [dm6]	G	A	7.387e^-5	0.772	INTERGENIC
2R	15033783	2R_15033783_SNP [dm3] 2R_19146278_SNP [dm6]	C	T	7.417e^-5	0.772	DOWNSTREAM CR43399 INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16498735	2L_16498735_SNP [dm3] 2L_16498735_SNP [dm6]	A	G	7.475e^-5	0.772	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10537666	3R_10537666_SNP [dm3] 3R_14711944_SNP [dm6]	T	C	7.531e^-5	0.772	INTRON kibra
3R	1934454	3R_1934454_SNP [dm3] 3R_6108732_SNP [dm6]	C	A	7.605e^-5	0.772	DOWNSTREAM Obp83ef INTRON Obp83cd
2R	13098869	2R_13098869_SNP [dm3] 2R_17211364_SNP [dm6]	G	A	7.605e^-5	0.772	INTERGENIC
X	8707899	X_8707899_SNP [dm3] X_8813866_SNP [dm6]	T	C	7.774e^-5	0.772	INTERGENIC
2R	19164458	2R_19164458_SNP [dm3] 2R_23276935_SNP [dm6]	T	G	7.797e^-5	0.772	INTERGENIC
3L	3527742	3L_3527742_SNP [dm3] 3L_3527742_SNP [dm6]	C	T	7.905e^-5	0.772	INTRON Eip63E
2L	11427831	2L_11427831_SNP [dm3] 2L_11427831_SNP [dm6]	T	C	7.922e^-5	0.772	INTERGENIC
3L	818366	3L_818366_SNP [dm3] 3L_818366_SNP [dm6]	C	A	7.933e^-5	0.772	INTERGENIC
X	15193699	X_15193699_SNP [dm3] X_15299666_SNP [dm6]	A	T	7.973e^-5	0.772	UPSTREAM gce INTRON gce
3R	3423374	3R_3423374_SNP [dm3] 3R_7597652_SNP [dm6]	C	T	8.029e^-5	0.772	INTRON CG34127
2R	11920711	2R_11920711_SNP [dm3] 2R_16033206_SNP [dm6]	G	A	8.057e^-5	0.772	INTRON SP2353
3R	4667885	3R_4667885_SNP [dm3] 3R_8842163_SNP [dm6]	G	A	8.089e^-5	0.772	INTRON pyd	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12682385	3L_12682385_SNP [dm3] 3L_12689285_SNP [dm6]	A	G	8.101e^-5	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15513919	2R_15513919_SNP [dm3] 2R_19626414_SNP [dm6]	A	T	8.102e^-5	0.772	INTRON sm
3R	22003978	3R_22003978_SNP [dm3] 3R_26178256_SNP [dm6]	C	T	8.143e^-5	0.772	INTRON CG31323
2L	2708527	2L_2708527_SNP [dm3] 2L_2708527_SNP [dm6]	C	G	8.264e^-5	0.772	INTRON CG31690
3R	13604850	3R_13604850_SNP [dm3] 3R_17779128_SNP [dm6]	G	A	8.387e^-5	0.772	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
3R	4571344	3R_4571344_SNP [dm3] 3R_8745622_SNP [dm6]	A	G	8.454e^-5	0.772	UTR_5_PRIME CG9801 INTRON CG9801
3L	8042364	3L_8042364_SNP [dm3] 3L_8049264_SNP [dm6]	A	G	8.471e^-5	0.772	INTRON nmo
3L	8825804	3L_8825804_SNP [dm3] 3L_8832704_SNP [dm6]	C	T	8.483e^-5	0.772	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8825808	3L_8825808_SNP [dm3] 3L_8832708_SNP [dm6]	C	T	8.483e^-5	0.772	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16578704	2L_16578704_SNP [dm3] 2L_16578704_SNP [dm6]	G	T	8.512e^-5	0.772	INTRON CG42389
3R	1781912	3R_1781912_SNP [dm3] 3R_5956190_SNP [dm6]	A	C	8.533e^-5	0.772	INTRON CG34113
2L	1357279	2L_1357279_MNP [dm3] 2L_1357279_MNP [dm6]	TTA	GGC	8.606e^-5	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22002747	3R_22002747_SNP [dm3] 3R_26177025_SNP [dm6]	C	A	8.621e^-5	0.772	INTRON CG31323
X	13157229	X_13157229_SNP [dm3] X_13263196_SNP [dm6]	A	G	8.629e^-5	0.772	UTR_3_PRIME HDAC4 DOWNSTREAM comt & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4127282	3L_4127282_SNP [dm3] 3L_4127282_SNP [dm6]	T	C	8.768e^-5	0.772	INTRON ens
2R	15546366	2R_15546366_SNP [dm3] 2R_19658861_SNP [dm6]	T	C	8.812e^-5	0.772	DOWNSTREAM CR44504 INTRON CG15125	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6624411	2L_6624411_SNP [dm3] 2L_6624411_SNP [dm6]	G	T	8.873e^-5	0.772	NON_SYNONYMOUS_CODING CG34345 DOWNSTREAM Oatp26F
X	12044042	X_12044042_SNP [dm3] X_12150009_SNP [dm6]	T	C	8.973e^-5	0.772	INTRON Ten-a
X	12044050	X_12044050_SNP [dm3] X_12150017_SNP [dm6]	G	A	8.973e^-5	0.772	INTRON Ten-a
3L	8656500	3L_8656500_SNP [dm3] 3L_8663400_SNP [dm6]	C	T	9.036e^-5	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1932715	3R_1932715_SNP [dm3] 3R_6106993_SNP [dm6]	G	T	9.090e^-5	0.772	INTERGENIC	regulatory region REDfly_CRMs
3R	6621248	3R_6621248_SNP [dm3] 3R_10795526_SNP [dm6]	G	A	9.135e^-5	0.772	NON_SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA
3L	9005432	3L_9005432_SNP [dm3] 3L_9012332_SNP [dm6]	C	A	9.138e^-5	0.772	DOWNSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7672384	2L_7672384_SNP [dm3] 2L_7672384_SNP [dm6]	G	A	9.189e^-5	0.772	INTRON Slob & 1 other
3L	8825921	3L_8825921_SNP [dm3] 3L_8832821_SNP [dm6]	A	G	9.196e^-5	0.772	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21999692	3R_21999692_SNP [dm3] 3R_26173970_SNP [dm6]	T	C	9.200e^-5	0.772	INTRON CG31323
3R	19063757	3R_19063757_SNP [dm3] 3R_23238035_SNP [dm6]	T	A	9.367e^-5	0.772	INTRON CG4467
X	12043955	X_12043955_SNP [dm3] X_12149922_SNP [dm6]	C	T	9.397e^-5	0.772	INTRON Ten-a
2L	9203234	2L_9203234_SNP [dm3] 2L_9203234_SNP [dm6]	G	A	9.429e^-5	0.772	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19795318	2R_19795318_SNP [dm3] 2R_23907795_SNP [dm6]	A	G	9.464e^-5	0.772	UTR_5_PRIME kcc UPSTREAM Nap1 & 1 other DOWNSTREAM CR44806	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15427691	2L_15427691_INS [dm3] 2L_15427691_INS [dm6]	T	TT	9.612e^-5	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5729005	3L_5729005_SNP [dm3] 3L_5735905_SNP [dm6]	C	T	9.692e^-5	0.772	SYNONYMOUS_CODING sif
X	18417308	X_18417308_INS [dm3] X_18523275_INS [dm6]	A	AATAATAATTATAATAATTA...	9.713e^-5	0.772	UPSTREAM CG6481 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10741113	3L_10741113_SNP [dm3] 3L_10748013_SNP [dm6]	C	A	9.783e^-5	0.772	INTERGENIC
3R	23905779	3R_23905779_SNP [dm3] 3R_28080057_SNP [dm6]	C	T	9.889e^-5	0.772	INTRON CG34362
3R	1778710	3R_1778710_SNP [dm3] 3R_5952988_SNP [dm6]	A	G	9.905e^-5	0.772	INTRON CG34113
3L	817014	3L_817014_SNP [dm3] 3L_817014_SNP [dm6]	G	A	9.973e^-5	0.772	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3R	27043057	3R_27043057_SNP [dm3] 3R_31217335_SNP [dm6]	T	C	9.984e^-5	0.772	DOWNSTREAM RNaseP:RNA INTRON CG1746	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12044033	X_12044033_SNP [dm3] X_12150000_SNP [dm6]	G	A	1.005e^-4	0.772	INTRON Ten-a
2R	14915633	2R_14915633_SNP [dm3] 2R_19028128_SNP [dm6]	T	C	1.007e^-4	0.772	INTRON 5-HT1B
3R	23916525	3R_23916525_SNP [dm3] 3R_28090803_SNP [dm6]	G	A	1.010e^-4	0.772	DOWNSTREAM CG34362 INTERGENIC
3R	22303030	3R_22303030_SNP [dm3] 3R_26477308_SNP [dm6]	G	A	1.011e^-4	0.772	SPLICE_SITE_REGION plum INTRON plum
2L	5451809	2L_5451809_SNP [dm3] 2L_5451809_SNP [dm6]	G	T	1.016e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	2588285	2L_2588285_SNP [dm3] 2L_2588285_SNP [dm6]	C	T	1.019e^-4	0.772	INTERGENIC
2L	21152679	2L_21152679_SNP [dm3] 2L_21152679_SNP [dm6]	A	G	1.021e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19061983	3R_19061983_SNP [dm3] 3R_23236261_SNP [dm6]	A	T	1.033e^-4	0.772	INTRON CG4467
2L	3268273	2L_3268273_SNP [dm3] 2L_3268273_SNP [dm6]	T	C	1.037e^-4	0.772	EXON CR44484
2L	18135034	2L_18135034_SNP [dm3] 2L_18135034_SNP [dm6]	A	G	1.039e^-4	0.772	INTRON kel
X	18417305	X_18417305_SNP [dm3] X_18523272_SNP [dm6]	T	A	1.039e^-4	0.772	UPSTREAM CG6481 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4608017	3R_4608017_SNP [dm3] 3R_8782295_SNP [dm6]	A	G	1.042e^-4	0.772	SYNONYMOUS_CODING Pif1A UTR_5_PRIME Pif1B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	515919	2L_515919_SNP [dm3] 2L_515919_SNP [dm6]	A	G	1.045e^-4	0.772	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8827949	3L_8827949_SNP [dm3] 3L_8834849_SNP [dm6]	A	T	1.046e^-4	0.772	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15066697	2L_15066697_SNP [dm3] 2L_15066697_SNP [dm6]	T	C	1.047e^-4	0.772	INTRON vas & 1 other	TF binding site BDTNP1_TFBS_dl
X	12566136	X_12566136_SNP [dm3] X_12672103_SNP [dm6]	T	A	1.059e^-4	0.772	INTRON Tis11	TF binding site BDTNP1_TFBS_dl
3R	1551336	3R_1551336_SNP [dm3] 3R_5725614_SNP [dm6]	G	A	1.066e^-4	0.772	DOWNSTREAM CR44924 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	15991144	2L_15991144_SNP [dm3] 2L_15991144_SNP [dm6]	A	C	1.084e^-4	0.772	INTERGENIC
2L	5399737	2L_5399737_SNP [dm3] 2L_5399737_SNP [dm6]	C	T	1.085e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18653525	2R_18653525_SNP [dm3] 2R_22766020_SNP [dm6]	C	A	1.088e^-4	0.772	DOWNSTREAM CG13527 INTRON CG42260
3L	10645379	3L_10645379_INS [dm3] 3L_10652279_INS [dm6]	G	GATAG	1.093e^-4	0.772	INTRON CG32066
3R	23557764	3R_23557764_SNP [dm3] 3R_27732042_SNP [dm6]	C	T	1.096e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1571013	3R_1571013_SNP [dm3] 3R_5745291_SNP [dm6]	G	A	1.100e^-4	0.772	SYNONYMOUS_CODING Madm	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	7321942	2R_7321942_SNP [dm3] 2R_11434437_SNP [dm6]	G	A	1.105e^-4	0.772	INTERGENIC
2L	15427562	2L_15427562_SNP [dm3] 2L_15427562_SNP [dm6]	C	T	1.105e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16443458	2L_16443458_SNP [dm3] 2L_16443458_SNP [dm6]	G	A	1.123e^-4	0.772	INTRON CG5888
X	21300333	X_21300333_SNP [dm3] X_21429306_SNP [dm6]	C	A	1.126e^-4	0.772	UPSTREAM CG10918 INTRON CG42343
3L	3527904	3L_3527904_SNP [dm3] 3L_3527904_SNP [dm6]	C	T	1.127e^-4	0.772	INTRON Eip63E
2R	3660648	2R_3660648_SNP [dm3] 2R_7773143_SNP [dm6]	T	G	1.131e^-4	0.772	INTRON CG30497 & 1 other	TF binding site mE1_TFBS_inv
X	10022186	X_10022186_SNP [dm3] X_10128153_SNP [dm6]	C	T	1.133e^-4	0.772	INTRON CR44894 & 1 other
2R	18749425	2R_18749425_SNP [dm3] 2R_22861902_SNP [dm6]	A	C	1.139e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26657429	3R_26657429_SNP [dm3] 3R_30831707_SNP [dm6]	A	T	1.140e^-4	0.772	INTRON CG15544
X	12044003	X_12044003_SNP [dm3] X_12149970_SNP [dm6]	A	T	1.142e^-4	0.772	INTRON Ten-a
3R	22001449	3R_22001449_SNP [dm3] 3R_26175727_SNP [dm6]	T	C	1.142e^-4	0.772	INTRON CG31323
2R	12894391	2R_12894391_SNP [dm3] 2R_17006886_SNP [dm6]	C	T	1.143e^-4	0.772	NON_SYNONYMOUS_CODING CG6805 DOWNSTREAM Ehbp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3341971	3L_3341971_INS [dm3] 3L_3341971_INS [dm6]	T	TT	1.155e^-4	0.772	INTRON kst
X	22224156	X_22224156_SNP [dm3] X_22822320_SNP [dm6]	G	C	1.155e^-4	0.772	INTERGENIC	transposable element FlyBase
3L	10188622	3L_10188622_SNP [dm3] 3L_10195522_SNP [dm6]	A	G	1.159e^-4	0.772	SYNONYMOUS_CODING ect
3R	26233921	3R_26233921_SNP [dm3] 3R_30408199_SNP [dm6]	A	C	1.160e^-4	0.772	INTERGENIC
2R	19894960	2R_19894960_DEL [dm3] 2R_24007437_DEL [dm6]	AA	A	1.173e^-4	0.772	INTRON Unc-89
2L	5791788	2L_5791788_SNP [dm3] 2L_5791788_SNP [dm6]	C	A	1.181e^-4	0.772	INTRON CG9171
3L	854878	3L_854878_SNP [dm3] 3L_854878_SNP [dm6]	G	A	1.184e^-4	0.772	NON_SYNONYMOUS_CODING dpr20	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15437965	2L_15437965_SNP [dm3] 2L_15437965_SNP [dm6]	C	A	1.193e^-4	0.772	INTERGENIC
X	16511027	X_16511027_SNP [dm3] X_16616994_SNP [dm6]	C	T	1.196e^-4	0.772	INTRON CG9782
X	2378978	X_2378978_SNP [dm3] X_2484945_SNP [dm6]	T	A	1.196e^-4	0.772	INTRON trol
3R	26658266	3R_26658266_SNP [dm3] 3R_30832544_SNP [dm6]	T	C	1.197e^-4	0.772	INTRON CG15544
3R	14809697	3R_14809697_SNP [dm3] 3R_18983975_SNP [dm6]	C	T	1.198e^-4	0.772	UPSTREAM gukh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	23472638	3R_23472638_SNP [dm3] 3R_27646916_SNP [dm6]	G	C	1.206e^-4	0.772	UPSTREAM tau INTRON tau
3R	22000782	3R_22000782_SNP [dm3] 3R_26175060_SNP [dm6]	C	G	1.214e^-4	0.772	INTRON CG31323
3R	22001162	3R_22001162_SNP [dm3] 3R_26175440_SNP [dm6]	C	T	1.214e^-4	0.772	INTRON CG31323
2R	16077002	2R_16077002_SNP [dm3] 2R_20189497_SNP [dm6]	A	G	1.217e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26658344	3R_26658344_SNP [dm3] 3R_30832622_SNP [dm6]	C	T	1.218e^-4	0.772	INTRON CG15544
X	8551477	X_8551477_SNP [dm3] X_8657444_SNP [dm6]	C	T	1.220e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10642150	2R_10642150_SNP [dm3] 2R_14754645_SNP [dm6]	G	T	1.224e^-4	0.772	SYNONYMOUS_CODING CG10151	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26958576	3R_26958576_SNP [dm3] 3R_31132854_SNP [dm6]	C	T	1.235e^-4	0.772	INTRON CR43458 EXON CR43458
X	17505091	X_17505091_SNP [dm3] X_17611058_SNP [dm6]	A	G	1.236e^-4	0.772	INTERGENIC
2L	2019963	2L_2019963_SNP [dm3] 2L_2019963_SNP [dm6]	A	C	1.237e^-4	0.772	INTRON CG4238
3L	18889880	3L_18889880_SNP [dm3] 3L_18896780_SNP [dm6]	C	T	1.239e^-4	0.772	UPSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	13135364	X_13135364_SNP [dm3] X_13241331_SNP [dm6]	A	T	1.239e^-4	0.772	INTRON mew
3L	18470932	3L_18470932_SNP [dm3] 3L_18477832_SNP [dm6]	T	C	1.242e^-4	0.772	UPSTREAM CR44673 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	354061	X_354061_SNP [dm3] X_460028_SNP [dm6]	C	A	1.246e^-4	0.772	UPSTREAM ase INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	11427850	2L_11427850_SNP [dm3] 2L_11427850_SNP [dm6]	G	A	1.248e^-4	0.772	INTERGENIC
3R	23913831	3R_23913831_SNP [dm3] 3R_28088109_SNP [dm6]	G	A	1.248e^-4	0.772	UTR_3_PRIME CG34362
3R	15332427	3R_15332427_SNP [dm3] 3R_19506705_SNP [dm6]	G	A	1.252e^-4	0.772	SYNONYMOUS_CODING Dys
2R	11662791	2R_11662791_SNP [dm3] 2R_15775286_SNP [dm6]	C	A	1.253e^-4	0.772	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23260726	3R_23260726_DEL [dm3] 3R_27435004_DEL [dm6]	CCA	C	1.254e^-4	0.772	INTRON side	TF binding site BDTNP1_TFBS_twi
3R	7889355	3R_7889355_SNP [dm3] 3R_12063633_SNP [dm6]	A	G	1.254e^-4	0.772	UPSTREAM CG14740 INTERGENIC
2R	12092883	2R_12092883_SNP [dm3] 2R_16205378_SNP [dm6]	C	T	1.256e^-4	0.772	SYNONYMOUS_CODING mrj UTR_5_PRIME mrj INTRON mrj	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	609035	3L_609035_SNP [dm3] 3L_609035_SNP [dm6]	A	G	1.259e^-4	0.772	DOWNSTREAM CR44513 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13135909	X_13135909_INS [dm3] X_13241876_INS [dm6]	C	CTT	1.260e^-4	0.772	INTRON mew
3L	10274108	3L_10274108_SNP [dm3] 3L_10281008_SNP [dm6]	T	G	1.263e^-4	0.772	INTERGENIC
3R	22001161	3R_22001161_SNP [dm3] 3R_26175439_SNP [dm6]	T	C	1.263e^-4	0.772	INTRON CG31323
3L	3536325	3L_3536325_INS [dm3] 3L_3536325_INS [dm6]	C	CC	1.265e^-4	0.772	INTRON Eip63E
3L	15580171	3L_15580171_SNP [dm3] 3L_15587071_SNP [dm6]	C	T	1.268e^-4	0.772	SYNONYMOUS_CODING CG7656
2R	18286326	2R_18286326_SNP [dm3] 2R_22398821_SNP [dm6]	G	C	1.270e^-4	0.772	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	3159527	3R_3159527_SNP [dm3] 3R_7333805_SNP [dm6]	C	T	1.271e^-4	0.772	INTERGENIC
2L	12353560	2L_12353560_SNP [dm3] 2L_12353560_SNP [dm6]	A	T	1.273e^-4	0.772	INTRON bru-2
2L	12598868	2L_12598868_DEL [dm3] 2L_12598868_DEL [dm6]	GG	G	1.279e^-4	0.772	INTRON nub
X	2378975	X_2378975_SNP [dm3] X_2484942_SNP [dm6]	C	T	1.279e^-4	0.772	INTRON trol
X	12044109	X_12044109_SNP [dm3] X_12150076_SNP [dm6]	A	T	1.280e^-4	0.772	INTRON Ten-a
3R	18603941	3R_18603941_DEL [dm3] 3R_22778219_DEL [dm6]	TT	T	1.283e^-4	0.772	INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19487577	2R_19487577_INS [dm3] 2R_23600054_INS [dm6]	T	TCCATTTCATTC...	1.288e^-4	0.772	UTR_5_PRIME CG42560 UTR_3_PRIME CG42559 DOWNSTREAM apt & 2 others
3R	19854202	3R_19854202_SNP [dm3] 3R_24028480_SNP [dm6]	T	C	1.296e^-4	0.772	INTRON KrT95D
3R	13672103	3R_13672103_SNP [dm3] 3R_17846381_SNP [dm6]	C	T	1.304e^-4	0.772	INTRON tinc
3R	27042941	3R_27042941_SNP [dm3] 3R_31217219_SNP [dm6]	G	A	1.306e^-4	0.772	DOWNSTREAM RNaseP:RNA INTRON CG1746	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5311631	3R_5311631_SNP [dm3] 3R_9485909_SNP [dm6]	G	A	1.318e^-4	0.772	INTRON CG16779
2L	16578655	2L_16578655_SNP [dm3] 2L_16578655_SNP [dm6]	A	T	1.322e^-4	0.772	INTRON CG42389
X	21174509	X_21174509_SNP [dm3] X_21303482_SNP [dm6]	A	G	1.322e^-4	0.772	UPSTREAM CG1718 DOWNSTREAM tRNA:CR32520 INTRON CG1718
2L	15883545	2L_15883545_SNP [dm3] 2L_15883545_SNP [dm6]	G	A	1.325e^-4	0.772	UPSTREAM CG44475 INTERGENIC
2R	13014675	2R_13014675_SNP [dm3] 2R_17127170_SNP [dm6]	G	A	1.325e^-4	0.772	UPSTREAM CG15605 DOWNSTREAM Amy-d INTERGENIC
3R	26947049	3R_26947049_SNP [dm3] 3R_31121327_SNP [dm6]	A	G	1.326e^-4	0.772	INTERGENIC
3R	26950235	3R_26950235_SNP [dm3] 3R_31124513_SNP [dm6]	C	G	1.331e^-4	0.772	INTERGENIC
3R	13358189	3R_13358189_SNP [dm3] 3R_17532467_SNP [dm6]	C	T	1.332e^-4	0.772	UTR_3_PRIME CG5823
3L	9611826	3L_9611826_SNP [dm3] 3L_9618726_SNP [dm6]	A	G	1.333e^-4	0.772	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
3R	23557793	3R_23557793_SNP [dm3] 3R_27732071_SNP [dm6]	A	G	1.333e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4716123	3R_4716123_SNP [dm3] 3R_8890401_SNP [dm6]	T	C	1.335e^-4	0.772	INTRON pyd
2L	4281086	2L_4281086_SNP [dm3] 2L_4281086_SNP [dm6]	A	T	1.337e^-4	0.772	INTRON Art2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6722786	3R_6722786_SNP [dm3] 3R_10897064_SNP [dm6]	G	T	1.353e^-4	0.777	DOWNSTREAM Leash & 1 other EXON CR45577	TF binding site BDTNP1_TFBS_sna
3R	26950216	3R_26950216_SNP [dm3] 3R_31124494_SNP [dm6]	C	T	1.358e^-4	0.777	INTERGENIC
3R	14828115	3R_14828115_DEL [dm3] 3R_19002393_DEL [dm6]	GG	G	1.362e^-4	0.777	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14965862	2L_14965862_SNP [dm3] 2L_14965862_SNP [dm6]	G	A	1.366e^-4	0.777	INTRON CG42313
2L	3866476	2L_3866476_SNP [dm3] 2L_3866476_SNP [dm6]	A	G	1.378e^-4	0.777	SYNONYMOUS_CODING CG3964	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12044072	X_12044072_MNP [dm3] X_12150039_MNP [dm6]	TCC	CTT	1.384e^-4	0.777	INTRON Ten-a
X	12044080	X_12044080_SNP [dm3] X_12150047_SNP [dm6]	A	T	1.384e^-4	0.777	INTRON Ten-a
X	12044086	X_12044086_SNP [dm3] X_12150053_SNP [dm6]	T	A	1.384e^-4	0.777	INTRON Ten-a
X	12044091	X_12044091_SNP [dm3] X_12150058_SNP [dm6]	C	T	1.384e^-4	0.777	INTRON Ten-a
3R	13358176	3R_13358176_SNP [dm3] 3R_17532454_SNP [dm6]	C	T	1.391e^-4	0.777	UTR_3_PRIME CG5823
3R	6715065	3R_6715065_SNP [dm3] 3R_10889343_SNP [dm6]	A	T	1.396e^-4	0.777	UTR_5_PRIME Adk3 UPSTREAM Adk3 DOWNSTREAM CG6621 INTRON Leash	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	17077869	3L_17077869_SNP [dm3] 3L_17084769_SNP [dm6]	T	C	1.399e^-4	0.777	INTRON Rbp6
3L	6635949	3L_6635949_SNP [dm3] 3L_6642849_SNP [dm6]	A	T	1.400e^-4	0.777	DOWNSTREAM CR45239 INTERGENIC
3L	3526548	3L_3526548_SNP [dm3] 3L_3526548_SNP [dm6]	C	T	1.411e^-4	0.778	INTRON Eip63E
X	11440481	X_11440481_SNP [dm3] X_11546448_SNP [dm6]	T	A	1.411e^-4	0.778	UPSTREAM mir-2492 INTRON Drak
3R	10145254	3R_10145254_SNP [dm3] 3R_14319532_SNP [dm6]	C	T	1.417e^-4	0.779	UTR_3_PRIME pr-set7 DOWNSTREAM Afti
2R	18895823	2R_18895823_INS [dm3] 2R_23008300_INS [dm6]	A	ACATACATA	1.421e^-4	0.779	INTRON twi	TF binding site mE1_TFBS_chinmo
2R	4041483	2R_4041483_SNP [dm3] 2R_8153978_SNP [dm6]	C	G	1.433e^-4	0.783	INTRON Lpin & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
X	19191809	X_19191809_SNP [dm3] X_19297776_SNP [dm6]	A	T	1.436e^-4	0.783	UTR_5_PRIME CG8034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	7085717	3L_7085717_SNP [dm3] 3L_7092617_SNP [dm6]	T	C	1.447e^-4	0.787	UPSTREAM Cpr65Ec INTERGENIC
3L	10274036	3L_10274036_DEL [dm3] 3L_10280936_DEL [dm6]	AACTTAACTAAT...	C	1.468e^-4	0.793	INTERGENIC
X	8560797	X_8560797_SNP [dm3] X_8666764_SNP [dm6]	C	T	1.476e^-4	0.793	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3991467	3R_3991467_SNP [dm3] 3R_8165745_SNP [dm6]	C	T	1.480e^-4	0.793	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10644981	3L_10644981_SNP [dm3] 3L_10651881_SNP [dm6]	A	T	1.482e^-4	0.793	INTRON CG32066
3L	11132561	3L_11132561_SNP [dm3] 3L_11139461_SNP [dm6]	G	C	1.492e^-4	0.793	INTRON CG32082
3L	9159539	3L_9159539_SNP [dm3] 3L_9166439_SNP [dm6]	C	T	1.498e^-4	0.793	INTRON Rdl
2R	4224105	2R_4224105_SNP [dm3] 2R_8336600_SNP [dm6]	T	C	1.510e^-4	0.793	INTRON pdm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	513636	2L_513636_SNP [dm3] 2L_513636_SNP [dm6]	A	T	1.525e^-4	0.793	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
3R	7889385	3R_7889385_SNP [dm3] 3R_12063663_SNP [dm6]	T	A	1.533e^-4	0.793	UPSTREAM CG14740 INTERGENIC
2L	9582788	2L_9582788_SNP [dm3] 2L_9582788_SNP [dm6]	A	T	1.538e^-4	0.793	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	1513779	3R_1513779_SNP [dm3] 3R_5688057_SNP [dm6]	T	A	1.539e^-4	0.793	INTRON plx
X	12044053	X_12044053_SNP [dm3] X_12150020_SNP [dm6]	A	G	1.543e^-4	0.793	INTRON Ten-a
2L	14693008	2L_14693008_SNP [dm3] 2L_14693008_SNP [dm6]	T	A	1.545e^-4	0.793	INTERGENIC
3L	8314617	3L_8314617_SNP [dm3] 3L_8321517_SNP [dm6]	A	C	1.551e^-4	0.793	INTRON CG13670
X	12043889	X_12043889_SNP [dm3] X_12149856_SNP [dm6]	A	T	1.552e^-4	0.793	INTRON Ten-a
X	12043913	X_12043913_SNP [dm3] X_12149880_SNP [dm6]	A	G	1.554e^-4	0.793	INTRON Ten-a
3R	25194108	3R_25194108_DEL [dm3] 3R_29368386_DEL [dm6]	TCCAAAAGACCATAG...	T	1.555e^-4	0.793	UPSTREAM CG45546 INTERGENIC
3R	25312248	3R_25312248_SNP [dm3] 3R_29486526_SNP [dm6]	C	A	1.558e^-4	0.793	UTR_3_PRIME Ptp99A DOWNSTREAM CG2321 INTRON CG2321
3R	23913788	3R_23913788_SNP [dm3] 3R_28088066_SNP [dm6]	T	C	1.561e^-4	0.793	UTR_3_PRIME CG34362	TF binding site BDTNP1_TFBS_twi
2R	16150071	2R_16150071_SNP [dm3] 2R_20262566_SNP [dm6]	C	A	1.564e^-4	0.793	DOWNSTREAM Hsl & 1 other INTRON PCNA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14288248	3L_14288248_SNP [dm3] 3L_14295148_SNP [dm6]	A	G	1.570e^-4	0.793	INTRON fz
3R	4561324	3R_4561324_SNP [dm3] 3R_8735602_SNP [dm6]	G	A	1.576e^-4	0.793	NON_SYNONYMOUS_CODING CG8202 DOWNSTREAM CG9801
3R	11691040	3R_11691040_SNP [dm3] 3R_15865318_SNP [dm6]	A	C	1.581e^-4	0.793	INTRON CG31183
3L	22408586	3L_22408586_SNP [dm3] 3L_22415486_SNP [dm6]	C	T	1.587e^-4	0.793	INTERGENIC
X	20039873	X_20039873_DEL [dm3] X_20145840_DEL [dm6]	TT	T	1.587e^-4	0.793	INTERGENIC
3L	8078163	3L_8078163_SNP [dm3] 3L_8085063_SNP [dm6]	G	T	1.590e^-4	0.793	INTRON Ect4
3L	8861889	3L_8861889_INS [dm3] 3L_8868789_INS [dm6]	G	GG	1.590e^-4	0.793	INTRON dally
3R	22002706	3R_22002706_SNP [dm3] 3R_26176984_SNP [dm6]	C	A	1.594e^-4	0.793	INTRON CG31323
3R	25219382	3R_25219382_SNP [dm3] 3R_29393660_SNP [dm6]	G	T	1.599e^-4	0.793	INTRON Ptp99A
3R	4717976	3R_4717976_SNP [dm3] 3R_8892254_SNP [dm6]	T	C	1.603e^-4	0.793	INTRON pyd
2L	15562032	2L_15562032_SNP [dm3] 2L_15562032_SNP [dm6]	C	T	1.605e^-4	0.793	INTRON kek3
3R	22641257	3R_22641257_SNP [dm3] 3R_26815535_SNP [dm6]	C	T	1.608e^-4	0.793	INTRON Tl
2R	20893152	2R_20893152_DEL [dm3] 2R_25005629_DEL [dm6]	GCTTTGGAG	G	1.610e^-4	0.793	INTRON zip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3498858	3R_3498858_SNP [dm3] 3R_7673136_SNP [dm6]	C	G	1.610e^-4	0.793	INTRON Nlg1
3L	10329346	3L_10329346_SNP [dm3] 3L_10336246_SNP [dm6]	A	T	1.614e^-4	0.793	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
3R	24951642	3R_24951642_SNP [dm3] 3R_29125920_SNP [dm6]	G	A	1.618e^-4	0.793	SYNONYMOUS_CODING CG11880	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11593345	3R_11593345_SNP [dm3] 3R_15767623_SNP [dm6]	A	G	1.619e^-4	0.793	UPSTREAM CG5623 INTERGENIC
2R	8175704	2R_8175704_SNP [dm3] 2R_12288199_SNP [dm6]	G	A	1.621e^-4	0.793	INTRON CG42700
3L	18364674	3L_18364674_SNP [dm3] 3L_18371574_SNP [dm6]	G	C	1.624e^-4	0.793	INTERGENIC
2R	5539829	2R_5539829_SNP [dm3] 2R_9652324_SNP [dm6]	G	A	1.628e^-4	0.793	INTRON Mmp2
3R	26657478	3R_26657478_SNP [dm3] 3R_30831756_SNP [dm6]	A	G	1.633e^-4	0.793	INTRON CG15544
X	15193675	X_15193675_SNP [dm3] X_15299642_SNP [dm6]	G	A	1.644e^-4	0.794	UPSTREAM gce INTRON gce
2R	17104405	2R_17104405_SNP [dm3] 2R_21216900_SNP [dm6]	T	C	1.647e^-4	0.794	SYNONYMOUS_CODING CG15661 DOWNSTREAM ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26216584	3R_26216584_SNP [dm3] 3R_30390862_SNP [dm6]	T	C	1.647e^-4	0.794	DOWNSTREAM Fer2LCH INTERGENIC
3R	25202697	3R_25202697_SNP [dm3] 3R_29376975_SNP [dm6]	A	C	1.651e^-4	0.794	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18203056	2R_18203056_SNP [dm3] 2R_22315551_SNP [dm6]	A	G	1.668e^-4	0.794	INTRON CR44758
X	20580254	X_20580254_SNP [dm3] X_20709227_SNP [dm6]	G	T	1.674e^-4	0.794	INTERGENIC	regulatory region REDfly_CRMs
2R	19108209	2R_19108209_SNP [dm3] 2R_23220686_SNP [dm6]	T	G	1.680e^-4	0.794	INTERGENIC
X	17207315	X_17207315_SNP [dm3] X_17313282_SNP [dm6]	C	A	1.682e^-4	0.794	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4709843	3R_4709843_SNP [dm3] 3R_8884121_SNP [dm6]	T	C	1.683e^-4	0.794	INTRON pyd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	3262061	3R_3262061_SNP [dm3] 3R_7436339_SNP [dm6]	T	A	1.689e^-4	0.794	INTERGENIC
2L	7435434	2L_7435434_SNP [dm3] 2L_7435434_SNP [dm6]	G	A	1.695e^-4	0.794	INTERGENIC
3R	23557766	3R_23557766_SNP [dm3] 3R_27732044_SNP [dm6]	C	T	1.695e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3951292	X_3951292_SNP [dm3] X_4057259_SNP [dm6]	C	A	1.698e^-4	0.794	INTERGENIC
3R	4496839	3R_4496839_SNP [dm3] 3R_8671117_SNP [dm6]	G	A	1.703e^-4	0.794	INTRON CG8036	TF binding site BDTNP1_TFBS_dl
X	12044059	X_12044059_SNP [dm3] X_12150026_SNP [dm6]	G	T	1.705e^-4	0.794	INTRON Ten-a
3L	13416768	3L_13416768_SNP [dm3] 3L_13423668_SNP [dm6]	T	A	1.716e^-4	0.794	NON_SYNONYMOUS_CODING CG33263 DOWNSTREAM CG14106
2L	3200330	2L_3200330_SNP [dm3] 2L_3200330_SNP [dm6]	T	C	1.720e^-4	0.794	UPSTREAM CG34393 INTRON CG34393
2L	19508858	2L_19508858_SNP [dm3] 2L_19508858_SNP [dm6]	C	T	1.722e^-4	0.794	UPSTREAM CG10188 DOWNSTREAM CG10186 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	11409822	2L_11409822_SNP [dm3] 2L_11409822_SNP [dm6]	T	A	1.722e^-4	0.794	INTERGENIC	regulatory region REDfly_CRMs
X	17263644	X_17263644_INS [dm3] X_17369611_INS [dm6]	T	TT	1.724e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	19526696	3L_19526696_SNP [dm3] 3L_19533596_SNP [dm6]	G	A	1.727e^-4	0.794	SPLICE_SITE_REGION Cpr76Bd INTRON Cpr76Bd	TF binding site mE1_TFBS_cad
2R	18933365	2R_18933365_SNP [dm3] 2R_23045842_SNP [dm6]	A	T	1.728e^-4	0.794	UPSTREAM twi INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8078105	3L_8078105_SNP [dm3] 3L_8085005_SNP [dm6]	C	G	1.741e^-4	0.797	INTRON Ect4
3R	4468591	3R_4468591_SNP [dm3] 3R_8642869_SNP [dm6]	T	A	1.745e^-4	0.797	UPSTREAM tRNA:Y1:85Ae & 1 other DOWNSTREAM Cyp313b1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
2L	11427833	2L_11427833_SNP [dm3] 2L_11427833_SNP [dm6]	T	A	1.748e^-4	0.797	INTERGENIC
3R	17337383	3R_17337383_SNP [dm3] 3R_21511661_SNP [dm6]	G	A	1.754e^-4	0.797	INTRON C15
2R	7292629	2R_7292629_SNP [dm3] 2R_11405124_SNP [dm6]	G	C	1.757e^-4	0.797	UPSTREAM CG7759 DOWNSTREAM tRNA:CR45107 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6982388	2L_6982388_SNP [dm3] 2L_6982388_SNP [dm6]	C	T	1.761e^-4	0.797	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4205094	3L_4205094_SNP [dm3] 3L_4205094_SNP [dm6]	C	A	1.771e^-4	0.797	UPSTREAM CG15005 INTRON CG43367
3R	22105154	3R_22105154_SNP [dm3] 3R_26279432_SNP [dm6]	C	T	1.779e^-4	0.797	INTERGENIC
3R	22642643	3R_22642643_SNP [dm3] 3R_26816921_SNP [dm6]	G	A	1.782e^-4	0.797	INTRON Tl
3R	16811653	3R_16811653_SNP [dm3] 3R_20985931_SNP [dm6]	C	T	1.791e^-4	0.797	UPSTREAM Calx DOWNSTREAM CG43446 INTRON Calx
2L	17331269	2L_17331269_SNP [dm3] 2L_17331269_SNP [dm6]	C	T	1.799e^-4	0.797	INTERGENIC
3R	21999125	3R_21999125_SNP [dm3] 3R_26173403_SNP [dm6]	C	T	1.800e^-4	0.797	INTRON CG31323
2R	7311194	2R_7311194_SNP [dm3] 2R_11423689_SNP [dm6]	A	G	1.825e^-4	0.797	INTRON Drip
2L	11895933	2L_11895933_SNP [dm3] 2L_11895933_SNP [dm6]	C	T	1.827e^-4	0.797	INTRON Pde1c
3L	17662376	3L_17662376_SNP [dm3] 3L_17669276_SNP [dm6]	G	A	1.827e^-4	0.797	UPSTREAM snmRNA:641 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8078146	3L_8078146_SNP [dm3] 3L_8085046_SNP [dm6]	G	A	1.829e^-4	0.797	INTRON Ect4
3L	10641748	3L_10641748_SNP [dm3] 3L_10648648_SNP [dm6]	T	C	1.842e^-4	0.797	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12283986	2L_12283986_SNP [dm3] 2L_12283986_SNP [dm6]	T	C	1.843e^-4	0.797	INTRON aret
2R	19022046	2R_19022046_SNP [dm3] 2R_23134523_SNP [dm6]	C	T	1.857e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8509414	3L_8509414_SNP [dm3] 3L_8516314_SNP [dm6]	G	A	1.857e^-4	0.797	SYNONYMOUS_CODING CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12044108	X_12044108_SNP [dm3] X_12150075_SNP [dm6]	G	A	1.865e^-4	0.797	INTRON Ten-a
2R	10610539	2R_10610539_SNP [dm3] 2R_14723034_SNP [dm6]	A	T	1.868e^-4	0.797	INTERGENIC
3R	21997550	3R_21997550_SNP [dm3] 3R_26171828_SNP [dm6]	G	A	1.871e^-4	0.797	INTRON CG31323
3R	26399658	3R_26399658_SNP [dm3] 3R_30573936_SNP [dm6]	T	A	1.874e^-4	0.797	UTR_3_PRIME tmod INTRON tmod
3R	4723105	3R_4723105_SNP [dm3] 3R_8897383_SNP [dm6]	T	A	1.874e^-4	0.797	INTRON pyd
2L	10037179	2L_10037179_SNP [dm3] 2L_10037179_SNP [dm6]	G	A	1.877e^-4	0.797	SYNONYMOUS_CODING obst-B
2L	16541433	2L_16541433_SNP [dm3] 2L_16541433_SNP [dm6]	A	G	1.886e^-4	0.797	INTERGENIC
3R	23557683	3R_23557683_SNP [dm3] 3R_27731961_SNP [dm6]	T	A	1.886e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18657457	2L_18657457_SNP [dm3] 2L_18657457_SNP [dm6]	T	A	1.901e^-4	0.797	INTRON MESR3
X	22224038	X_22224038_SNP [dm3] X_22822202_SNP [dm6]	C	T	1.903e^-4	0.797	INTERGENIC	transposable element FlyBase
3R	15772757	3R_15772757_SNP [dm3] 3R_19947035_SNP [dm6]	A	C	1.903e^-4	0.797	INTRON Hs6st
3R	25069039	3R_25069039_SNP [dm3] 3R_29243317_SNP [dm6]	A	C	1.905e^-4	0.797	SPLICE_SITE_REGION CG31445 INTRON CG31445
2L	16541455	2L_16541455_SNP [dm3] 2L_16541455_SNP [dm6]	A	G	1.908e^-4	0.797	INTERGENIC
3R	25202598	3R_25202598_DEL [dm3] 3R_29376876_DEL [dm6]	GTTCAAATAACTG...	G	1.911e^-4	0.797	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18607856	2R_18607856_SNP [dm3] 2R_22720351_SNP [dm6]	G	A	1.937e^-4	0.797	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11405772	2L_11405772_SNP [dm3] 2L_11405772_SNP [dm6]	A	G	1.939e^-4	0.797	INTERGENIC	regulatory region REDfly_CRMs
X	22221924	X_22221924_INS [dm3] X_22820088_INS [dm6]	C	AT	1.940e^-4	0.797	INTERGENIC
2R	11920505	2R_11920505_SNP [dm3] 2R_16033000_SNP [dm6]	A	T	1.943e^-4	0.797	INTRON SP2353
3R	9959677	3R_9959677_SNP [dm3] 3R_14133955_SNP [dm6]	A	G	1.943e^-4	0.797	INTERGENIC
3R	23477000	3R_23477000_SNP [dm3] 3R_27651278_SNP [dm6]	G	T	1.944e^-4	0.797	UTR_3_PRIME tau UPSTREAM tau INTRON tau
2R	3823208	2R_3823208_SNP [dm3] 2R_7935703_SNP [dm6]	C	T	1.945e^-4	0.797	SYNONYMOUS_CODING drosha	TF binding site mE1_TFBS_sens
3L	5326997	3L_5326997_SNP [dm3] 3L_5333897_SNP [dm6]	G	C	1.950e^-4	0.797	UPSTREAM CR45742 INTERGENIC
2R	7114493	2R_7114493_SNP [dm3] 2R_11226988_SNP [dm6]	C	T	1.951e^-4	0.797	UTR_3_PRIME metro DOWNSTREAM CG7737	TF binding site mE1_TFBS_cad
2L	14379253	2L_14379253_SNP [dm3] 2L_14379253_SNP [dm6]	T	A	1.959e^-4	0.797	SYNONYMOUS_CODING ppk	TF binding site mE1_TFBS_sens
2R	13098941	2R_13098941_SNP [dm3] 2R_17211436_SNP [dm6]	A	C	1.961e^-4	0.797	INTERGENIC
2L	14200002	2L_14200002_SNP [dm3] 2L_14200002_SNP [dm6]	C	T	1.972e^-4	0.797	INTRON Dyrk2
3L	1406629	3L_1406629_SNP [dm3] 3L_1406629_SNP [dm6]	A	G	1.973e^-4	0.797	INTRON Ptp61F
2L	11770949	2L_11770949_SNP [dm3] 2L_11770949_SNP [dm6]	T	C	1.973e^-4	0.797	INTERGENIC
3R	14615058	3R_14615058_SNP [dm3] 3R_18789336_SNP [dm6]	A	T	1.984e^-4	0.797	INTRON CG7720
3R	4373850	3R_4373850_SNP [dm3] 3R_8548128_SNP [dm6]	C	T	1.986e^-4	0.797	DOWNSTREAM CR45574 INTERGENIC
2L	5541793	2L_5541793_SNP [dm3] 2L_5541793_SNP [dm6]	G	A	1.991e^-4	0.797	SYNONYMOUS_CODING Hel25E UPSTREAM Lam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	16386890	3L_16386890_SNP [dm3] 3L_16393790_SNP [dm6]	G	C	1.992e^-4	0.797	UPSTREAM Grp INTRON CG44836	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10816767	3L_10816767_SNP [dm3] 3L_10823667_SNP [dm6]	A	T	1.996e^-4	0.797	INTERGENIC
2L	5347780	2L_5347780_SNP [dm3] 2L_5347780_SNP [dm6]	A	G	2.006e^-4	0.797	INTRON nompC
3L	1590250	3L_1590250_SNP [dm3] 3L_1590250_SNP [dm6]	A	G	2.007e^-4	0.797	INTRON CG13917
3R	1623572	3R_1623572_SNP [dm3] 3R_5797850_SNP [dm6]	C	A	2.007e^-4	0.797	NON_SYNONYMOUS_CODING CG10979	TF binding site BDTNP1_TFBS_da
3R	4485891	3R_4485891_DEL [dm3] 3R_8660169_DEL [dm6]	TT	T	2.010e^-4	0.797	UTR_5_PRIME bel DOWNSTREAM p	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	26080587	3R_26080587_SNP [dm3] 3R_30254865_SNP [dm6]	A	G	2.011e^-4	0.797	DOWNSTREAM CG18404 INTERGENIC
X	11665371	X_11665371_SNP [dm3] X_11771338_SNP [dm6]	T	A	2.013e^-4	0.797	SYNONYMOUS_CODING dy	TF binding site mE1_TFBS_chinmo
2R	6746855	2R_6746855_SNP [dm3] 2R_10859350_SNP [dm6]	G	T	2.017e^-4	0.797	UPSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl
2L	5372061	2L_5372061_SNP [dm3] 2L_5372061_SNP [dm6]	C	A	2.018e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18452505	2R_18452505_SNP [dm3] 2R_22565000_SNP [dm6]	G	A	2.019e^-4	0.797	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3268248	2L_3268248_SNP [dm3] 2L_3268248_SNP [dm6]	C	T	2.044e^-4	0.797	UPSTREAM CR44484 INTERGENIC
3R	18955595	3R_18955595_SNP [dm3] 3R_23129873_SNP [dm6]	T	C	2.045e^-4	0.797	INTRON hh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5100537	2L_5100537_SNP [dm3] 2L_5100537_SNP [dm6]	G	A	2.050e^-4	0.797	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	12044014	X_12044014_SNP [dm3] X_12149981_SNP [dm6]	C	A	2.051e^-4	0.797	INTRON Ten-a
2R	20051467	2R_20051467_SNP [dm3] 2R_24163944_SNP [dm6]	A	G	2.051e^-4	0.797	INTRON CG3328	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1562427	3R_1562427_SNP [dm3] 3R_5736705_SNP [dm6]	C	T	2.055e^-4	0.797	UPSTREAM CG1236 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	11245439	3R_11245439_SNP [dm3] 3R_15419717_SNP [dm6]	T	A	2.056e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26939960	3R_26939960_SNP [dm3] 3R_31114238_SNP [dm6]	A	T	2.061e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_inv
2R	4754928	2R_4754928_SNP [dm3] 2R_8867423_SNP [dm6]	C	T	2.062e^-4	0.797	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8852697	3R_8852697_SNP [dm3] 3R_13026975_SNP [dm6]	A	C	2.063e^-4	0.797	UTR_3_PRIME CG12360 DOWNSTREAM CG12360 & 1 other
3R	7321410	3R_7321410_SNP [dm3] 3R_11495688_SNP [dm6]	G	A	2.064e^-4	0.797	INTERGENIC
3R	25099038	3R_25099038_INS [dm3] 3R_29273316_INS [dm6]	T	TCTTC	2.074e^-4	0.797	INTERGENIC	regulatory region REDfly_CRMs
3L	7901364	3L_7901364_SNP [dm3] 3L_7908264_SNP [dm6]	C	T	2.080e^-4	0.797	INTRON pbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	23472977	3R_23472977_SNP [dm3] 3R_27647255_SNP [dm6]	G	A	2.083e^-4	0.797	UPSTREAM tau INTRON tau
2L	10519734	2L_10519734_SNP [dm3] 2L_10519734_SNP [dm6]	G	A	2.086e^-4	0.797	DOWNSTREAM Lrr47 INTERGENIC
3R	14350134	3R_14350134_SNP [dm3] 3R_18524412_SNP [dm6]	A	T	2.087e^-4	0.797	INTRON fru
2L	1357781	2L_1357781_SNP [dm3] 2L_1357781_SNP [dm6]	G	A	2.089e^-4	0.797	INTERGENIC
2L	12283972	2L_12283972_SNP [dm3] 2L_12283972_SNP [dm6]	G	C	2.104e^-4	0.797	INTRON aret
X	16094420	X_16094420_SNP [dm3] X_16200387_SNP [dm6]	C	T	2.113e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6713288	3R_6713288_SNP [dm3] 3R_10887566_SNP [dm6]	C	T	2.130e^-4	0.797	UTR_3_PRIME Adk3 INTRON Leash	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7292606	2R_7292606_SNP [dm3] 2R_11405101_SNP [dm6]	C	G	2.131e^-4	0.797	UPSTREAM CG7759 DOWNSTREAM tRNA:CR45107 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16541485	2L_16541485_SNP [dm3] 2L_16541485_SNP [dm6]	T	A	2.144e^-4	0.797	INTERGENIC
3R	14967581	3R_14967581_SNP [dm3] 3R_19141859_SNP [dm6]	G	A	2.145e^-4	0.797	INTRON Ppcs
3L	8078164	3L_8078164_DEL [dm3] 3L_8085064_DEL [dm6]	GG	G	2.152e^-4	0.797	INTRON Ect4
3R	1924546	3R_1924546_SNP [dm3] 3R_6098824_SNP [dm6]	A	G	2.158e^-4	0.797	INTRON Gasp	TF binding site BDTNP1_TFBS_prd
3R	14034329	3R_14034329_SNP [dm3] 3R_18208607_SNP [dm6]	T	G	2.158e^-4	0.797	UPSTREAM CG44158 INTRON CG7985
2L	1024598	2L_1024598_SNP [dm3] 2L_1024598_SNP [dm6]	T	G	2.158e^-4	0.797	INTRON IA-2
3R	25202315	3R_25202315_SNP [dm3] 3R_29376593_SNP [dm6]	T	A	2.163e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2712044	2L_2712044_SNP [dm3] 2L_2712044_SNP [dm6]	G	T	2.163e^-4	0.797	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25779754	3R_25779754_SNP [dm3] 3R_29954032_SNP [dm6]	C	G	2.166e^-4	0.797	INTRON TkR99D
3R	3162452	3R_3162452_SNP [dm3] 3R_7336730_SNP [dm6]	G	T	2.180e^-4	0.797	INTERGENIC
3R	6717800	3R_6717800_SNP [dm3] 3R_10892078_SNP [dm6]	G	A	2.181e^-4	0.797	SPLICE_SITE_REGION CG6621 INTRON Leash & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	811707	3L_811707_SNP [dm3] 3L_811707_SNP [dm6]	C	T	2.181e^-4	0.797	INTERGENIC
X	12973056	X_12973056_SNP [dm3] X_13079023_SNP [dm6]	G	A	2.185e^-4	0.797	UTR_3_PRIME rad DOWNSTREAM hep
X	2378869	X_2378869_SNP [dm3] X_2484836_SNP [dm6]	G	A	2.189e^-4	0.797	INTRON trol
2R	4432039	2R_4432039_DEL [dm3] 2R_8544534_DEL [dm6]	TTT	T	2.190e^-4	0.797	UPSTREAM CR44279 INTERGENIC
X	3259677	X_3259677_SNP [dm3] X_3365644_SNP [dm6]	G	A	2.191e^-4	0.797	INTERGENIC
2L	16430921	2L_16430921_SNP [dm3] 2L_16430921_SNP [dm6]	T	C	2.195e^-4	0.797	INTRON CG5888
3R	25330537	3R_25330537_SNP [dm3] 3R_29504815_SNP [dm6]	C	T	2.195e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20584650	2L_20584650_SNP [dm3] 2L_20584650_SNP [dm6]	T	A	2.196e^-4	0.797	INTRON CR44909
2L	11427830	2L_11427830_SNP [dm3] 2L_11427830_SNP [dm6]	T	G	2.199e^-4	0.797	INTERGENIC
3R	9996739	3R_9996739_SNP [dm3] 3R_14171017_SNP [dm6]	G	A	2.200e^-4	0.797	UTR_3_PRIME Dop1R1
3R	6707141	3R_6707141_INS [dm3] 3R_10881419_INS [dm6]	A	ACAA	2.202e^-4	0.797	INTRON Tpc1
3R	26548205	3R_26548205_SNP [dm3] 3R_30722483_SNP [dm6]	G	C	2.207e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11629679	3R_11629679_SNP [dm3] 3R_15803957_SNP [dm6]	C	A	2.210e^-4	0.797	UPSTREAM alpha-Man-IIb DOWNSTREAM CG9593 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19390085	2R_19390085_SNP [dm3] 2R_23502562_SNP [dm6]	A	G	2.224e^-4	0.797	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5100591	2L_5100591_SNP [dm3] 2L_5100591_SNP [dm6]	A	T	2.224e^-4	0.797	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	23893983	3R_23893983_SNP [dm3] 3R_28068261_SNP [dm6]	G	T	2.235e^-4	0.797	INTRON CG34362
2R	7658133	2R_7658133_SNP [dm3] 2R_11770628_SNP [dm6]	G	A	2.244e^-4	0.797	INTRON ths
3R	25202370	3R_25202370_DEL [dm3] 3R_29376648_DEL [dm6]	TTCGCGCA	T	2.247e^-4	0.797	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25202413	3R_25202413_DEL [dm3] 3R_29376691_DEL [dm6]	CC	C	2.247e^-4	0.797	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25202428	3R_25202428_SNP [dm3] 3R_29376706_SNP [dm6]	G	A	2.247e^-4	0.797	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25202429	3R_25202429_SNP [dm3] 3R_29376707_SNP [dm6]	A	C	2.247e^-4	0.797	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25202444	3R_25202444_INS [dm3] 3R_29376722_INS [dm6]	C	AA	2.247e^-4	0.797	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	22117886	2L_22117886_SNP [dm3] 2L_22117886_SNP [dm6]	A	T	2.248e^-4	0.797	INTERGENIC	transposable element FlyBase
X	15272032	X_15272032_SNP [dm3] X_15377999_SNP [dm6]	G	T	2.259e^-4	0.797	INTRON acj6
3L	8861618	3L_8861618_SNP [dm3] 3L_8868518_SNP [dm6]	A	G	2.259e^-4	0.797	INTRON dally
3R	14889305	3R_14889305_SNP [dm3] 3R_19063583_SNP [dm6]	G	T	2.264e^-4	0.797	INTRON cdi
X	11178563	X_11178563_SNP [dm3] X_11284530_SNP [dm6]	C	T	2.288e^-4	0.797	INTRON CG44422
2L	5100505	2L_5100505_SNP [dm3] 2L_5100505_SNP [dm6]	T	A	2.289e^-4	0.797	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	25194264	3R_25194264_SNP [dm3] 3R_29368542_SNP [dm6]	C	G	2.293e^-4	0.797	UPSTREAM CG45546 INTERGENIC
3L	811702	3L_811702_SNP [dm3] 3L_811702_SNP [dm6]	C	T	2.299e^-4	0.797	INTERGENIC
2L	11405777	2L_11405777_SNP [dm3] 2L_11405777_SNP [dm6]	C	T	2.309e^-4	0.797	INTERGENIC	regulatory region REDfly_CRMs
2R	7284725	2R_7284725_SNP [dm3] 2R_11397220_SNP [dm6]	G	A	2.309e^-4	0.797	START_GAINED sprt UTR_5_PRIME sprt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13593883	2R_13593883_SNP [dm3] 2R_17706378_SNP [dm6]	T	C	2.309e^-4	0.797	SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad
X	2378947	X_2378947_SNP [dm3] X_2484914_SNP [dm6]	A	T	2.309e^-4	0.797	INTRON trol
3R	4635069	3R_4635069_SNP [dm3] 3R_8809347_SNP [dm6]	C	T	2.316e^-4	0.797	SYNONYMOUS_CODING CG9837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3008772	3L_3008772_SNP [dm3] 3L_3008772_SNP [dm6]	C	T	2.317e^-4	0.797	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad
2L	12284017	2L_12284017_SNP [dm3] 2L_12284017_SNP [dm6]	A	T	2.317e^-4	0.797	INTRON aret
3L	3527650	3L_3527650_SNP [dm3] 3L_3527650_SNP [dm6]	G	A	2.320e^-4	0.797	INTRON Eip63E
X	17570948	X_17570948_SNP [dm3] X_17676915_SNP [dm6]	A	G	2.332e^-4	0.797	INTRON chas	TF binding site BDTNP1_TFBS_sna
3R	22245491	3R_22245491_SNP [dm3] 3R_26419769_SNP [dm6]	A	T	2.339e^-4	0.797	INTERGENIC
3L	12569837	3L_12569837_SNP [dm3] 3L_12576737_SNP [dm6]	C	T	2.345e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	816997	3L_816997_INS [dm3] 3L_816997_INS [dm6]	C	CCAC	2.346e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3R	15045517	3R_15045517_SNP [dm3] 3R_19219795_SNP [dm6]	C	T	2.346e^-4	0.797	INTRON vib
2R	7688105	2R_7688105_SNP [dm3] 2R_11800600_SNP [dm6]	G	T	2.349e^-4	0.797	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	11374189	2L_11374189_SNP [dm3] 2L_11374189_SNP [dm6]	T	C	2.355e^-4	0.797	DOWNSTREAM salr INTERGENIC
2L	18956169	2L_18956169_SNP [dm3] 2L_18956169_SNP [dm6]	G	T	2.359e^-4	0.797	SYNONYMOUS_CODING CG10623
3R	1513820	3R_1513820_SNP [dm3] 3R_5688098_SNP [dm6]	G	C	2.363e^-4	0.797	INTRON plx
3R	13021134	3R_13021134_SNP [dm3] 3R_17195412_SNP [dm6]	A	C	2.371e^-4	0.797	INTRON Mur89F
3R	24682201	3R_24682201_SNP [dm3] 3R_28856479_SNP [dm6]	C	T	2.374e^-4	0.797	INTRON spg & 1 other
2R	12339744	2R_12339744_SNP [dm3] 2R_16452239_SNP [dm6]	G	T	2.374e^-4	0.797	INTERGENIC
2L	15083517	2L_15083517_SNP [dm3] 2L_15083517_SNP [dm6]	T	A	2.376e^-4	0.797	INTRON CG15270
3R	13672132	3R_13672132_SNP [dm3] 3R_17846410_SNP [dm6]	A	T	2.379e^-4	0.797	INTRON tinc
2R	19050615	2R_19050615_SNP [dm3] 2R_23163092_SNP [dm6]	T	A	2.380e^-4	0.797	UTR_3_PRIME CG34371
2R	2869653	2R_2869653_SNP [dm3] 2R_6982148_SNP [dm6]	C	A	2.381e^-4	0.797	SYNONYMOUS_CODING CG30156 UPSTREAM CR44171 INTRON vimar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2029106	2L_2029106_SNP [dm3] 2L_2029106_SNP [dm6]	C	T	2.393e^-4	0.797	SYNONYMOUS_CODING CG4238	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18696223	2R_18696223_SNP [dm3] 2R_22808718_SNP [dm6]	A	C	2.394e^-4	0.797	UTR_5_PRIME stl
2R	16765871	2R_16765871_SNP [dm3] 2R_20878366_SNP [dm6]	T	A	2.399e^-4	0.797	UTR_3_PRIME Ipk1 INTRON Ipk1
3L	9751481	3L_9751481_SNP [dm3] 3L_9758381_SNP [dm6]	A	T	2.401e^-4	0.797	INTRON CG42268
3L	5281187	3L_5281187_SNP [dm3] 3L_5288087_SNP [dm6]	C	T	2.401e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4855208	3R_4855208_SNP [dm3] 3R_9029486_SNP [dm6]	G	T	2.404e^-4	0.797	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5079848	2R_5079848_SNP [dm3] 2R_9192343_SNP [dm6]	G	T	2.416e^-4	0.797	UPSTREAM CG8026 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25474766	3R_25474766_SNP [dm3] 3R_29649044_SNP [dm6]	G	A	2.427e^-4	0.797	INTRON Dop1R2
2L	16590841	2L_16590841_INS [dm3] 2L_16590841_INS [dm6]	A	AA	2.428e^-4	0.797	INTRON CG42389	TF binding site mE1_TFBS_inv
2R	19164428	2R_19164428_SNP [dm3] 2R_23276905_SNP [dm6]	T	G	2.428e^-4	0.797	INTERGENIC
3L	4796526	3L_4796526_SNP [dm3] 3L_4796526_SNP [dm6]	A	C	2.429e^-4	0.797	DOWNSTREAM RhoGEF64C INTERGENIC
3R	1674671	3R_1674671_INS [dm3] 3R_5848949_INS [dm6]	C	CA	2.431e^-4	0.797	UPSTREAM CR10991 DOWNSTREAM CG14676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15193393	X_15193393_SNP [dm3] X_15299360_SNP [dm6]	C	T	2.448e^-4	0.797	UTR_5_PRIME gce INTRON gce	TF binding site BDTNP1_TFBS_dl
2L	11070825	2L_11070825_SNP [dm3] 2L_11070825_SNP [dm6]	T	A	2.455e^-4	0.797	UPSTREAM CG14915 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12167119	3L_12167119_SNP [dm3] 3L_12174019_SNP [dm6]	A	G	2.457e^-4	0.797	INTRON Rh7
2R	18549477	2R_18549477_DEL [dm3] 2R_22661972_DEL [dm6]	TT	T	2.462e^-4	0.797	UTR_5_PRIME CG42566 DOWNSTREAM CG42565 & 2 others
3L	3537772	3L_3537772_SNP [dm3] 3L_3537772_SNP [dm6]	C	A	2.464e^-4	0.797	INTRON Eip63E
2R	3592881	2R_3592881_SNP [dm3] 2R_7705376_SNP [dm6]	G	A	2.464e^-4	0.797	UPSTREAM CG34216 INTRON tor
3L	7822749	3L_7822749_SNP [dm3] 3L_7829649_SNP [dm6]	C	T	2.476e^-4	0.797	INTRON Pdp1
X	3937701	X_3937701_SNP [dm3] X_4043668_SNP [dm6]	C	A	2.493e^-4	0.797	INTERGENIC
3R	10290244	3R_10290244_SNP [dm3] 3R_14464522_SNP [dm6]	G	A	2.494e^-4	0.797	INTRON cv-c
2R	10608370	2R_10608370_SNP [dm3] 2R_14720865_SNP [dm6]	T	A	2.500e^-4	0.797	INTERGENIC
3R	6714380	3R_6714380_SNP [dm3] 3R_10888658_SNP [dm6]	A	G	2.503e^-4	0.797	INTRON Leash & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	21928007	X_21928007_SNP [dm3] X_22526171_SNP [dm6]	C	T	2.504e^-4	0.797	INTRON CG17600
3R	13165342	3R_13165342_SNP [dm3] 3R_17339620_SNP [dm6]	T	G	2.505e^-4	0.797	INTRON beat-IIa	TF binding site mE1_TFBS_sbb
3R	1936072	3R_1936072_SNP [dm3] 3R_6110350_SNP [dm6]	G	C	2.507e^-4	0.797	NON_SYNONYMOUS_CODING Obp83ef DOWNSTREAM Obp83cd
2L	16872000	2L_16872000_SNP [dm3] 2L_16872000_SNP [dm6]	G	C	2.508e^-4	0.797	INTRON CR31781
2L	16596750	2L_16596750_SNP [dm3] 2L_16596750_SNP [dm6]	T	C	2.509e^-4	0.797	INTRON CG42389
2L	6368737	2L_6368737_SNP [dm3] 2L_6368737_SNP [dm6]	A	G	2.512e^-4	0.797	SYNONYMOUS_CODING CG9505	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4694049	3R_4694049_SNP [dm3] 3R_8868327_SNP [dm6]	G	A	2.519e^-4	0.797	UPSTREAM pyd INTRON pyd
3R	4527672	3R_4527672_SNP [dm3] 3R_8701950_SNP [dm6]	A	T	2.521e^-4	0.797	INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	17288350	3R_17288350_SNP [dm3] 3R_21462628_SNP [dm6]	C	G	2.522e^-4	0.797	INTERGENIC
2R	3582311	2R_3582311_SNP [dm3] 2R_7694806_SNP [dm6]	T	A	2.525e^-4	0.797	INTRON CG1399	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26952580	3R_26952580_SNP [dm3] 3R_31126858_SNP [dm6]	C	T	2.527e^-4	0.797	NON_SYNONYMOUS_CODING CG15554
2R	11920517	2R_11920517_SNP [dm3] 2R_16033012_SNP [dm6]	A	T	2.532e^-4	0.797	INTRON SP2353
X	354182	X_354182_SNP [dm3] X_460149_SNP [dm6]	T	A	2.533e^-4	0.797	UPSTREAM ase INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21382277	3R_21382277_SNP [dm3] 3R_25556555_SNP [dm6]	G	A	2.536e^-4	0.797	INTRON msi
X	2379148	X_2379148_SNP [dm3] X_2485115_SNP [dm6]	A	G	2.541e^-4	0.797	INTRON trol
3L	9751538	3L_9751538_SNP [dm3] 3L_9758438_SNP [dm6]	A	G	2.542e^-4	0.797	INTRON CG42268
2L	12225067	2L_12225067_SNP [dm3] 2L_12225067_SNP [dm6]	C	G	2.548e^-4	0.797	INTRON aret
2R	18452664	2R_18452664_SNP [dm3] 2R_22565159_SNP [dm6]	C	G	2.548e^-4	0.797	INTRON dnr1	TF binding site mE1_TFBS_HSA
2R	10605330	2R_10605330_SNP [dm3] 2R_14717825_SNP [dm6]	C	A	2.554e^-4	0.797	INTERGENIC
3R	19480726	3R_19480726_SNP [dm3] 3R_23655004_SNP [dm6]	C	T	2.555e^-4	0.797	INTRON CG31145
3R	6712129	3R_6712129_SNP [dm3] 3R_10886407_SNP [dm6]	T	C	2.560e^-4	0.797	DOWNSTREAM Adk3 INTRON Leash	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13165697	3R_13165697_SNP [dm3] 3R_17339975_SNP [dm6]	G	A	2.566e^-4	0.797	INTRON beat-IIa
3R	19243318	3R_19243318_SNP [dm3] 3R_23417596_SNP [dm6]	T	C	2.570e^-4	0.797	INTRON CG4374	TF binding site mE1_TFBS_chinmo
3L	3526973	3L_3526973_DEL [dm3] 3L_3526973_DEL [dm6]	ATTTGA	A	2.573e^-4	0.797	INTRON Eip63E
3L	5657136	3L_5657136_SNP [dm3] 3L_5664036_SNP [dm6]	G	T	2.576e^-4	0.797	INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25273238	3R_25273238_SNP [dm3] 3R_29447516_SNP [dm6]	A	G	2.577e^-4	0.797	INTRON Ptp99A
3R	22004032	3R_22004032_SNP [dm3] 3R_26178310_SNP [dm6]	G	C	2.577e^-4	0.797	INTRON CG31323
2L	1023827	2L_1023827_SNP [dm3] 2L_1023827_SNP [dm6]	T	A	2.590e^-4	0.797	INTRON IA-2
X	17048404	X_17048404_SNP [dm3] X_17154371_SNP [dm6]	G	A	2.591e^-4	0.797	UTR_3_PRIME xmas-2 INTRON xmas-1
3R	1583231	3R_1583231_SNP [dm3] 3R_5757509_SNP [dm6]	C	T	2.591e^-4	0.797	NON_SYNONYMOUS_CODING Sec8	TF binding site mE1_TFBS_cad
2L	6100036	2L_6100036_SNP [dm3] 2L_6100036_SNP [dm6]	T	C	2.592e^-4	0.797	UPSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13056323	2R_13056323_SNP [dm3] 2R_17168818_SNP [dm6]	T	C	2.602e^-4	0.799	INTERGENIC
2L	18146505	2L_18146505_SNP [dm3] 2L_18146505_SNP [dm6]	T	G	2.607e^-4	0.799	INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1928973	3R_1928973_SNP [dm3] 3R_6103251_SNP [dm6]	C	A	2.613e^-4	0.799	DOWNSTREAM CR44929 INTRON CR44929	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
2L	5791875	2L_5791875_SNP [dm3] 2L_5791875_SNP [dm6]	A	G	2.616e^-4	0.799	INTRON CG9171
2R	13098908	2R_13098908_SNP [dm3] 2R_17211403_SNP [dm6]	A	T	2.621e^-4	0.799	INTERGENIC
3R	1583325	3R_1583325_SNP [dm3] 3R_5757603_SNP [dm6]	G	A	2.628e^-4	0.8	SYNONYMOUS_CODING Sec8	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15098226	2L_15098226_SNP [dm3] 2L_15098226_SNP [dm6]	A	C	2.637e^-4	0.802	INTERGENIC
2L	12555612	2L_12555612_SNP [dm3] 2L_12555612_SNP [dm6]	C	A	2.643e^-4	0.802	INTERGENIC
3R	1917459	3R_1917459_SNP [dm3] 3R_6091737_SNP [dm6]	A	T	2.651e^-4	0.802	INTRON Gasp
X	17570883	X_17570883_SNP [dm3] X_17676850_SNP [dm6]	A	G	2.651e^-4	0.802	INTRON chas	TF binding site BDTNP1_TFBS_sna
X	18333247	X_18333247_SNP [dm3] X_18439214_SNP [dm6]	G	T	2.659e^-4	0.802	UTR_3_PRIME CG32551 UPSTREAM CG43841 DOWNSTREAM CG6290 INTRON CG32548
2R	19518834	2R_19518834_SNP [dm3] 2R_23631311_SNP [dm6]	T	C	2.664e^-4	0.802	INTERGENIC	silencer mE1_HDAC_PRE
3R	1938532	3R_1938532_SNP [dm3] 3R_6112810_SNP [dm6]	A	T	2.665e^-4	0.802	UPSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
2L	2994031	2L_2994031_SNP [dm3] 2L_2994031_SNP [dm6]	G	C	2.671e^-4	0.802	SYNONYMOUS_CODING CG3558	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	23473009	3R_23473009_SNP [dm3] 3R_27647287_SNP [dm6]	G	A	2.674e^-4	0.802	UPSTREAM tau INTRON tau
3R	26624660	3R_26624660_SNP [dm3] 3R_30798938_SNP [dm6]	C	T	2.687e^-4	0.802	INTRON wts	TF binding site mE1_TFBS_cad
3L	13953220	3L_13953220_SNP [dm3] 3L_13960120_SNP [dm6]	G	A	2.696e^-4	0.802	INTRON CG32137
2L	16365422	2L_16365422_SNP [dm3] 2L_16365422_SNP [dm6]	A	G	2.699e^-4	0.802	UPSTREAM jhamt INTERGENIC
3R	19312316	3R_19312316_SNP [dm3] 3R_23486594_SNP [dm6]	G	A	2.703e^-4	0.802	UPSTREAM Ir94h DOWNSTREAM CR44324 INTERGENIC
3L	4909693	3L_4909693_SNP [dm3] 3L_4909693_SNP [dm6]	C	A	2.706e^-4	0.802	UPSTREAM Rh50 INTERGENIC
X	3523845	X_3523845_SNP [dm3] X_3629812_SNP [dm6]	C	T	2.711e^-4	0.802	INTRON AstA-R1
2R	14686325	2R_14686325_SNP [dm3] 2R_18798820_SNP [dm6]	A	T	2.738e^-4	0.802	INTRON l_2_08717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	25701105	3R_25701105_SNP [dm3] 3R_29875383_SNP [dm6]	C	T	2.738e^-4	0.802	DOWNSTREAM CG34133 INTERGENIC
3L	11209596	3L_11209596_SNP [dm3] 3L_11216496_SNP [dm6]	A	T	2.741e^-4	0.802	INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_Trl
2L	8120747	2L_8120747_SNP [dm3] 2L_8120747_SNP [dm6]	G	A	2.748e^-4	0.802	SYNONYMOUS_CODING mon2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2588920	2L_2588920_SNP [dm3] 2L_2588920_SNP [dm6]	T	C	2.749e^-4	0.802	INTERGENIC
2L	17811519	2L_17811519_SNP [dm3] 2L_17811519_SNP [dm6]	C	T	2.754e^-4	0.802	DOWNSTREAM CG42830 INTRON CadN2
3L	8827989	3L_8827989_SNP [dm3] 3L_8834889_SNP [dm6]	G	T	2.762e^-4	0.802	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3135736	3L_3135736_SNP [dm3] 3L_3135736_SNP [dm6]	C	A	2.763e^-4	0.802	INTRON CG11537
3R	4487387	3R_4487387_SNP [dm3] 3R_8661665_SNP [dm6]	C	T	2.774e^-4	0.802	SYNONYMOUS_CODING p UPSTREAM bel	TF binding site mE1_TFBS_sens
3L	9751546	3L_9751546_SNP [dm3] 3L_9758446_SNP [dm6]	G	T	2.775e^-4	0.802	INTRON CG42268
3L	12566141	3L_12566141_SNP [dm3] 3L_12573041_SNP [dm6]	C	A	2.775e^-4	0.802	UPSTREAM sowah INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14378833	2L_14378833_SNP [dm3] 2L_14378833_SNP [dm6]	T	G	2.778e^-4	0.802	NON_SYNONYMOUS_CODING ppk
2L	11427863	2L_11427863_SNP [dm3] 2L_11427863_SNP [dm6]	C	A	2.779e^-4	0.802	INTERGENIC
3R	25202434	3R_25202434_SNP [dm3] 3R_29376712_SNP [dm6]	T	G	2.782e^-4	0.802	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18523309	3R_18523309_SNP [dm3] 3R_22697587_SNP [dm6]	T	A	2.786e^-4	0.802	UPSTREAM Cyp6d4 INTRON cd
X	12050139	X_12050139_SNP [dm3] X_12156106_SNP [dm6]	A	T	2.797e^-4	0.802	INTRON Ten-a
3R	23972030	3R_23972030_SNP [dm3] 3R_28146308_SNP [dm6]	T	A	2.803e^-4	0.802	UPSTREAM CG34354 INTERGENIC
3R	20197285	3R_20197285_SNP [dm3] 3R_24371563_SNP [dm6]	G	A	2.805e^-4	0.802	DOWNSTREAM CG13614 INTRON CG17782
3L	15471940	3L_15471940_SNP [dm3] 3L_15478840_SNP [dm6]	A	T	2.807e^-4	0.802	INTERGENIC
3R	1513163	3R_1513163_SNP [dm3] 3R_5687441_SNP [dm6]	C	T	2.818e^-4	0.802	INTRON plx
2R	7294751	2R_7294751_SNP [dm3] 2R_11407246_SNP [dm6]	G	C	2.823e^-4	0.802	NON_SYNONYMOUS_CODING CG7759
2L	18146540	2L_18146540_SNP [dm3] 2L_18146540_SNP [dm6]	T	C	2.825e^-4	0.802	INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4050722	2R_4050722_SNP [dm3] 2R_8163217_SNP [dm6]	C	T	2.827e^-4	0.802	SYNONYMOUS_CODING RagC-D UPSTREAM Rs1 DOWNSTREAM CG30373	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	22641258	3R_22641258_SNP [dm3] 3R_26815536_SNP [dm6]	T	G	2.829e^-4	0.802	INTRON Tl
3L	15115275	3L_15115275_SNP [dm3] 3L_15122175_SNP [dm6]	G	C	2.831e^-4	0.802	UTR_3_PRIME CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	22003969	3R_22003969_SNP [dm3] 3R_26178247_SNP [dm6]	A	G	2.833e^-4	0.802	INTRON CG31323
X	4493214	X_4493214_SNP [dm3] X_4599181_SNP [dm6]	T	G	2.836e^-4	0.802	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
X	7356568	X_7356568_SNP [dm3] X_7462535_SNP [dm6]	T	C	2.836e^-4	0.802	INTERGENIC
X	3178942	X_3178942_DEL [dm3] X_3284909_DEL [dm6]	GG	G	2.837e^-4	0.802	INTRON dnc
3R	26945809	3R_26945809_SNP [dm3] 3R_31120087_SNP [dm6]	A	T	2.837e^-4	0.802	INTERGENIC
2L	16578724	2L_16578724_SNP [dm3] 2L_16578724_SNP [dm6]	A	C	2.839e^-4	0.802	INTRON CG42389
3R	26952302	3R_26952302_SNP [dm3] 3R_31126580_SNP [dm6]	C	T	2.842e^-4	0.802	INTRON CG15554
2R	3884512	2R_3884512_SNP [dm3] 2R_7997007_SNP [dm6]	A	G	2.851e^-4	0.802	INTRON Hey
2L	18329204	2L_18329204_SNP [dm3] 2L_18329204_SNP [dm6]	C	T	2.855e^-4	0.802	INTRON Fas3
3R	26216867	3R_26216867_SNP [dm3] 3R_30391145_SNP [dm6]	T	C	2.869e^-4	0.802	DOWNSTREAM Fer2LCH INTERGENIC
3L	878030	3L_878030_INS [dm3] 3L_878030_INS [dm6]	A	AATA	2.872e^-4	0.802	UTR_3_PRIME CG13907 INTRON CG32479
3R	13604736	3R_13604736_SNP [dm3] 3R_17779014_SNP [dm6]	G	A	2.875e^-4	0.802	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
3R	6711006	3R_6711006_SNP [dm3] 3R_10885284_SNP [dm6]	A	C	2.877e^-4	0.802	UPSTREAM Leash & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	4707890	3R_4707890_SNP [dm3] 3R_8882168_SNP [dm6]	T	A	2.880e^-4	0.802	INTRON pyd
3R	1926879	3R_1926879_SNP [dm3] 3R_6101157_SNP [dm6]	C	T	2.885e^-4	0.802	UPSTREAM Gasp DOWNSTREAM CR44929 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	7901800	3L_7901800_DEL [dm3] 3L_7908700_DEL [dm6]	GTC	G	2.889e^-4	0.802	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7901807	3L_7901807_INS [dm3] 3L_7908707_INS [dm6]	T	AAAAA	2.889e^-4	0.802	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4112833	3L_4112833_SNP [dm3] 3L_4112833_SNP [dm6]	A	G	2.889e^-4	0.802	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8828000	3L_8828000_SNP [dm3] 3L_8834900_SNP [dm6]	G	A	2.910e^-4	0.802	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8828029	3L_8828029_SNP [dm3] 3L_8834929_SNP [dm6]	C	A	2.910e^-4	0.802	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8828032	3L_8828032_SNP [dm3] 3L_8834932_SNP [dm6]	C	T	2.910e^-4	0.802	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	1940097	3R_1940097_DEL [dm3] 3R_6114375_DEL [dm6]	GTGAATGCAATTTTTGG...	G	2.913e^-4	0.802	INTERGENIC
2L	1024480	2L_1024480_SNP [dm3] 2L_1024480_SNP [dm6]	C	A	2.917e^-4	0.802	INTRON IA-2	insulator Insulator_Class_II.mE01
2R	3660522	2R_3660522_SNP [dm3] 2R_7773017_SNP [dm6]	A	G	2.932e^-4	0.802	INTRON CG30497 & 1 other	TF binding site mE1_TFBS_inv
2L	15792984	2L_15792984_SNP [dm3] 2L_15792984_SNP [dm6]	C	T	2.946e^-4	0.802	INTERGENIC
2R	11417678	2R_11417678_SNP [dm3] 2R_15530173_SNP [dm6]	T	G	2.946e^-4	0.802	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16541477	2L_16541477_SNP [dm3] 2L_16541477_SNP [dm6]	T	C	2.948e^-4	0.802	INTERGENIC
3L	3126094	3L_3126094_SNP [dm3] 3L_3126094_SNP [dm6]	C	A	2.952e^-4	0.802	INTRON prominin-like	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	1936657	3R_1936657_SNP [dm3] 3R_6110935_SNP [dm6]	T	A	2.955e^-4	0.802	DOWNSTREAM Obp83g INTRON Obp83ef
3R	19734918	3R_19734918_SNP [dm3] 3R_23909196_SNP [dm6]	C	A	2.956e^-4	0.802	INTRON sba
3L	18360996	3L_18360996_SNP [dm3] 3L_18367896_SNP [dm6]	C	T	2.959e^-4	0.802	INTERGENIC
X	2939846	X_2939846_SNP [dm3] X_3045813_SNP [dm6]	T	C	2.961e^-4	0.802	INTRON kirre	TF binding site mE1_TFBS_cad
2L	12172859	2L_12172859_DEL [dm3] 2L_12172859_DEL [dm6]	TA	T	2.962e^-4	0.802	UPSTREAM crok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3072914	2R_3072914_SNP [dm3] 2R_7185409_SNP [dm6]	C	T	2.967e^-4	0.802	DOWNSTREAM CG30384 INTRON pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8358479	2R_8358479_SNP [dm3] 2R_12470974_SNP [dm6]	C	G	2.968e^-4	0.802	NON_SYNONYMOUS_CODING CG8545 UPSTREAM CG8550 INTRON dgt5	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
2L	18140199	2L_18140199_SNP [dm3] 2L_18140199_SNP [dm6]	G	A	2.968e^-4	0.802	INTRON Socs36E	TF binding site mE1_TFBS_cad
2R	17240308	2R_17240308_SNP [dm3] 2R_21352803_SNP [dm6]	T	C	2.970e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16875638	X_16875638_SNP [dm3] X_16981605_SNP [dm6]	T	A	2.972e^-4	0.802	INTRON CG45002
2L	8699618	2L_8699618_SNP [dm3] 2L_8699618_SNP [dm6]	A	T	2.974e^-4	0.802	UTR_5_PRIME Hnf4 INTRON Hnf4
3L	819313	3L_819313_SNP [dm3] 3L_819313_SNP [dm6]	A	G	2.979e^-4	0.802	INTERGENIC
3L	817143	3L_817143_SNP [dm3] 3L_817143_SNP [dm6]	G	T	2.980e^-4	0.802	INTERGENIC
2R	10608411	2R_10608411_SNP [dm3] 2R_14720906_SNP [dm6]	A	G	2.992e^-4	0.804	INTERGENIC
2R	6799140	2R_6799140_SNP [dm3] 2R_10911635_SNP [dm6]	G	A	3.005e^-4	0.805	INTERGENIC
2L	11632446	2L_11632446_SNP [dm3] 2L_11632446_SNP [dm6]	G	A	3.011e^-4	0.805	INTERGENIC
3R	22457730	3R_22457730_SNP [dm3] 3R_26632008_SNP [dm6]	C	A	3.015e^-4	0.805	SYNONYMOUS_CODING TwdlN	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1931699	3R_1931699_SNP [dm3] 3R_6105977_SNP [dm6]	A	T	3.019e^-4	0.805	INTERGENIC	regulatory region REDfly_CRMs
3R	24918414	3R_24918414_SNP [dm3] 3R_29092692_SNP [dm6]	G	A	3.025e^-4	0.805	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5310786	3L_5310786_SNP [dm3] 3L_5317686_SNP [dm6]	G	A	3.035e^-4	0.805	INTERGENIC
2R	19795238	2R_19795238_SNP [dm3] 2R_23907715_SNP [dm6]	T	G	3.040e^-4	0.805	UTR_5_PRIME kcc UPSTREAM Nap1 & 1 other DOWNSTREAM CR44806	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8942628	2R_8942628_SNP [dm3] 2R_13055123_SNP [dm6]	G	A	3.045e^-4	0.805	DOWNSTREAM Drl-2 INTERGENIC
3R	1814189	3R_1814189_SNP [dm3] 3R_5988467_SNP [dm6]	T	G	3.066e^-4	0.805	UPSTREAM CR44927 INTERGENIC
2L	13958874	2L_13958874_DEL [dm3] 2L_13958874_DEL [dm6]	AAAATA	A	3.068e^-4	0.805	INTRON NimA
3R	20261467	3R_20261467_SNP [dm3] 3R_24435745_SNP [dm6]	A	C	3.077e^-4	0.805	INTRON nAChRalpha1
X	13216264	X_13216264_SNP [dm3] X_13322231_SNP [dm6]	C	A	3.081e^-4	0.805	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20531983	3R_20531983_SNP [dm3] 3R_24706261_SNP [dm6]	G	A	3.082e^-4	0.805	SYNONYMOUS_CODING slo	TF binding site mE1_TFBS_chinmo
3R	13305920	3R_13305920_SNP [dm3] 3R_17480198_SNP [dm6]	G	C	3.094e^-4	0.805	INTRON Dscam3
3R	6715631	3R_6715631_SNP [dm3] 3R_10889909_SNP [dm6]	C	T	3.096e^-4	0.805	UTR_3_PRIME CG6621 UPSTREAM Adk3 INTRON Leash	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25721852	3R_25721852_SNP [dm3] 3R_29896130_SNP [dm6]	C	T	3.104e^-4	0.805	INTRON CG31038	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4595919	3R_4595919_SNP [dm3] 3R_8770197_SNP [dm6]	C	T	3.105e^-4	0.805	SYNONYMOUS_CODING CG8236
3R	15674052	3R_15674052_DEL [dm3] 3R_19848330_DEL [dm6]	CC	G	3.108e^-4	0.805	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3537651	3L_3537651_SNP [dm3] 3L_3537651_SNP [dm6]	G	T	3.108e^-4	0.805	INTRON Eip63E
X	13481529	X_13481529_SNP [dm3] X_13587496_SNP [dm6]	T	C	3.114e^-4	0.805	INTRON Tango13
3L	2500898	3L_2500898_SNP [dm3] 3L_2500898_SNP [dm6]	A	T	3.116e^-4	0.805	INTRON CG16758
2L	4923917	2L_4923917_SNP [dm3] 2L_4923917_SNP [dm6]	G	A	3.117e^-4	0.805	INTRON hoe1
3R	1665702	3R_1665702_SNP [dm3] 3R_5839980_SNP [dm6]	A	T	3.121e^-4	0.805	INTERGENIC
3R	1800071	3R_1800071_SNP [dm3] 3R_5974349_SNP [dm6]	C	T	3.126e^-4	0.805	INTRON Obp83a
3R	25157516	3R_25157516_SNP [dm3] 3R_29331794_SNP [dm6]	T	G	3.127e^-4	0.805	INTERGENIC
2R	9102466	2R_9102466_SNP [dm3] 2R_13214961_SNP [dm6]	T	G	3.132e^-4	0.805	UPSTREAM AQP DOWNSTREAM CG4630 INTRON CG4627	TF binding site BDTNP1_TFBS_dl
2R	12882303	2R_12882303_SNP [dm3] 2R_16994798_SNP [dm6]	C	T	3.139e^-4	0.805	UTR_3_PRIME Cbp53E DOWNSTREAM Cbp53E
3L	18503473	3L_18503473_SNP [dm3] 3L_18510373_SNP [dm6]	C	A	3.149e^-4	0.805	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	12718139	3L_12718139_SNP [dm3] 3L_12725039_SNP [dm6]	G	A	3.164e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25973660	3R_25973660_SNP [dm3] 3R_30147938_SNP [dm6]	T	G	3.167e^-4	0.805	INTRON AdoR
2L	17396074	2L_17396074_SNP [dm3] 2L_17396074_SNP [dm6]	G	A	3.180e^-4	0.805	INTRON CLIP-190	TF binding site mE1_TFBS_zfh1
X	15271682	X_15271682_SNP [dm3] X_15377649_SNP [dm6]	A	T	3.189e^-4	0.805	INTRON acj6
X	15271685	X_15271685_SNP [dm3] X_15377652_SNP [dm6]	C	T	3.189e^-4	0.805	INTRON acj6
2L	4992271	2L_4992271_INS [dm3] 2L_4992271_INS [dm6]	G	GG	3.192e^-4	0.805	UTR_3_PRIME CG34126 DOWNSTREAM Rtnl1
X	13469802	X_13469802_SNP [dm3] X_13575769_SNP [dm6]	A	G	3.199e^-4	0.805	UPSTREAM Tango13 INTRON Tango13	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16578691	2L_16578691_SNP [dm3] 2L_16578691_SNP [dm6]	T	G	3.206e^-4	0.805	INTRON CG42389
3L	9485228	3L_9485228_INS [dm3] 3L_9492128_INS [dm6]	T	TGT	3.210e^-4	0.805	UTR_5_PRIME CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15243786	3L_15243786_SNP [dm3] 3L_15250686_SNP [dm6]	G	A	3.211e^-4	0.805	INTERGENIC
3R	26940968	3R_26940968_SNP [dm3] 3R_31115246_SNP [dm6]	C	A	3.219e^-4	0.805	INTERGENIC
3R	3164974	3R_3164974_SNP [dm3] 3R_7339252_SNP [dm6]	C	T	3.224e^-4	0.805	INTERGENIC	TF binding site mE1_TFBS_cad
X	11440408	X_11440408_SNP [dm3] X_11546375_SNP [dm6]	C	A	3.232e^-4	0.805	INTRON Drak
2R	3823138	2R_3823138_SNP [dm3] 2R_7935633_SNP [dm6]	A	G	3.242e^-4	0.805	SYNONYMOUS_CODING drosha	TF binding site mE1_TFBS_sens
3R	26193004	3R_26193004_INS [dm3] 3R_30367282_INS [dm6]	T	TAT	3.244e^-4	0.805	UTR_3_PRIME hdc
X	8560804	X_8560804_SNP [dm3] X_8666771_SNP [dm6]	A	T	3.244e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27043026	3R_27043026_SNP [dm3] 3R_31217304_SNP [dm6]	A	G	3.248e^-4	0.805	DOWNSTREAM RNaseP:RNA INTRON CG1746	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4353855	2R_4353855_DEL [dm3] 2R_8466350_DEL [dm6]	TT	T	3.250e^-4	0.805	INTRON Mal-A6	TF binding site mE1_TFBS_chinmo
3R	1537460	3R_1537460_SNP [dm3] 3R_5711738_SNP [dm6]	C	T	3.253e^-4	0.805	NON_SYNONYMOUS_CODING plx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18835840	3L_18835840_SNP [dm3] 3L_18842740_SNP [dm6]	G	T	3.258e^-4	0.805	INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da
3L	10644012	3L_10644012_SNP [dm3] 3L_10650912_SNP [dm6]	T	C	3.262e^-4	0.805	INTRON CG32066
X	22224200	X_22224200_SNP [dm3] X_22822364_SNP [dm6]	G	T	3.262e^-4	0.805	INTERGENIC	transposable element FlyBase
3L	1841626	3L_1841626_SNP [dm3] 3L_1841626_SNP [dm6]	A	C	3.262e^-4	0.805	INTRON Cpr62Bc
2L	3110529	2L_3110529_SNP [dm3] 2L_3110529_SNP [dm6]	C	T	3.263e^-4	0.805	SYNONYMOUS_CODING PpD6 INTRON toc
2L	18657067	2L_18657067_SNP [dm3] 2L_18657067_SNP [dm6]	C	T	3.271e^-4	0.805	INTRON MESR3
3L	8656467	3L_8656467_SNP [dm3] 3L_8663367_SNP [dm6]	G	A	3.276e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25769991	3R_25769991_SNP [dm3] 3R_29944269_SNP [dm6]	C	A	3.281e^-4	0.805	SYNONYMOUS_CODING CG15523
2L	9582828	2L_9582828_SNP [dm3] 2L_9582828_SNP [dm6]	G	A	3.288e^-4	0.805	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	14363413	2L_14363413_SNP [dm3] 2L_14363413_SNP [dm6]	C	T	3.290e^-4	0.805	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	817092	3L_817092_SNP [dm3] 3L_817092_SNP [dm6]	A	C	3.296e^-4	0.805	INTERGENIC
2R	506302	2R_506302_SNP [dm3] 2R_4618797_SNP [dm6]	A	G	3.302e^-4	0.805	UPSTREAM CG17486 INTERGENIC	TF binding site mE1_TFBS_Ubx transposable element FlyBase
2R	12339822	2R_12339822_SNP [dm3] 2R_16452317_SNP [dm6]	C	T	3.308e^-4	0.805	INTERGENIC
X	12404120	X_12404120_SNP [dm3] X_12510087_SNP [dm6]	G	T	3.313e^-4	0.805	INTRON CG2556
3R	12957051	3R_12957051_SNP [dm3] 3R_17131329_SNP [dm6]	C	T	3.332e^-4	0.805	SYNONYMOUS_CODING CG4053 UPSTREAM CG17475	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2983896	2L_2983896_SNP [dm3] 2L_2983896_SNP [dm6]	A	G	3.338e^-4	0.805	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18489358	2R_18489358_SNP [dm3] 2R_22601853_SNP [dm6]	A	T	3.343e^-4	0.805	INTRON CG4294
2L	899898	2L_899898_SNP [dm3] 2L_899898_SNP [dm6]	C	A	3.354e^-4	0.805	NON_SYNONYMOUS_CODING Lsp1beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26958113	3R_26958113_SNP [dm3] 3R_31132391_SNP [dm6]	C	G	3.359e^-4	0.805	EXON CR43458
3R	6711167	3R_6711167_SNP [dm3] 3R_10885445_SNP [dm6]	A	C	3.367e^-4	0.805	UPSTREAM Leash & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5624875	2L_5624875_SNP [dm3] 2L_5624875_SNP [dm6]	C	T	3.371e^-4	0.805	INTERGENIC
2L	1245080	2L_1245080_SNP [dm3] 2L_1245080_SNP [dm6]	G	A	3.373e^-4	0.805	INTERGENIC
2R	18653544	2R_18653544_SNP [dm3] 2R_22766039_SNP [dm6]	C	G	3.375e^-4	0.805	DOWNSTREAM CG13527 INTRON CG42260
2R	7929977	2R_7929977_SNP [dm3] 2R_12042472_SNP [dm6]	C	T	3.377e^-4	0.805	SYNONYMOUS_CODING RpIII128
3R	7793944	3R_7793944_SNP [dm3] 3R_11968222_SNP [dm6]	G	A	3.384e^-4	0.805	UPSTREAM CG12213 INTRON GC1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	4666084	3R_4666084_SNP [dm3] 3R_8840362_SNP [dm6]	G	A	3.386e^-4	0.805	SYNONYMOUS_CODING pyd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8042343	3L_8042343_SNP [dm3] 3L_8049243_SNP [dm6]	A	T	3.389e^-4	0.805	INTRON nmo
2L	15036090	2L_15036090_SNP [dm3] 2L_15036090_SNP [dm6]	A	G	3.390e^-4	0.805	DOWNSTREAM CIAPIN1 INTRON yellow-c
2L	5099325	2L_5099325_SNP [dm3] 2L_5099325_SNP [dm6]	G	T	3.391e^-4	0.805	UTR_3_PRIME CG8680 DOWNSTREAM CG8680 & 1 other	TF binding site mE1_TFBS_HSA
3L	18552959	3L_18552959_SNP [dm3] 3L_18559859_SNP [dm6]	G	A	3.396e^-4	0.805	UPSTREAM AstC-R1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13672223	3R_13672223_INS [dm3] 3R_17846501_INS [dm6]	T	TACTT	3.397e^-4	0.805	INTRON tinc
2L	7186192	2L_7186192_SNP [dm3] 2L_7186192_SNP [dm6]	G	A	3.399e^-4	0.805	SYNONYMOUS_CODING CG4496 DOWNSTREAM CG4495	TF binding site mE1_TFBS_HSA
3R	20194163	3R_20194163_SNP [dm3] 3R_24368441_SNP [dm6]	T	G	3.400e^-4	0.805	NON_SYNONYMOUS_CODING CG33341 UPSTREAM CG42812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12566129	X_12566129_DEL [dm3] X_12672096_DEL [dm6]	GAG	G	3.407e^-4	0.805	INTRON Tis11	TF binding site BDTNP1_TFBS_dl
2L	1024409	2L_1024409_SNP [dm3] 2L_1024409_SNP [dm6]	T	G	3.411e^-4	0.805	INTRON IA-2
3R	1828218	3R_1828218_SNP [dm3] 3R_6002496_SNP [dm6]	C	T	3.413e^-4	0.805	UTR_3_PRIME Rm62 INTRON Rm62	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12566114	3L_12566114_SNP [dm3] 3L_12573014_SNP [dm6]	C	A	3.414e^-4	0.805	UPSTREAM sowah INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
X	13196420	X_13196420_DEL [dm3] X_13302387_DEL [dm6]	AA	A	3.415e^-4	0.805	UTR_5_PRIME CG1764
3L	20057369	3L_20057369_SNP [dm3] 3L_20064269_SNP [dm6]	A	G	3.431e^-4	0.805	INTRON sNPF-R
2R	4224092	2R_4224092_SNP [dm3] 2R_8336587_SNP [dm6]	G	T	3.432e^-4	0.805	INTRON pdm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8826542	3L_8826542_SNP [dm3] 3L_8833442_SNP [dm6]	G	C	3.434e^-4	0.805	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	18653495	2R_18653495_SNP [dm3] 2R_22765990_SNP [dm6]	A	T	3.438e^-4	0.805	DOWNSTREAM CG13527 INTRON CG42260
2L	1357354	2L_1357354_SNP [dm3] 2L_1357354_SNP [dm6]	A	T	3.444e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19575161	2R_19575161_SNP [dm3] 2R_23687638_SNP [dm6]	C	A	3.446e^-4	0.805	UTR_3_PRIME St3 UPSTREAM Pal2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25555058	3R_25555058_SNP [dm3] 3R_29729336_SNP [dm6]	C	T	3.462e^-4	0.805	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da
2R	4359757	2R_4359757_SNP [dm3] 2R_8472252_SNP [dm6]	C	A	3.462e^-4	0.805	SYNONYMOUS_CODING Mal-A8 UPSTREAM Mal-A7
3R	1975350	3R_1975350_SNP [dm3] 3R_6149628_SNP [dm6]	T	C	3.468e^-4	0.805	DOWNSTREAM CG31559 INTERGENIC	TF binding site mE1_TFBS_ttk
3R	27459360	3R_27459360_SNP [dm3] 3R_31633638_SNP [dm6]	G	C	3.483e^-4	0.805	INTRON kek6
2R	17581542	2R_17581542_SNP [dm3] 2R_21694037_SNP [dm6]	G	A	3.484e^-4	0.805	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20194168	3R_20194168_SNP [dm3] 3R_24368446_SNP [dm6]	A	C	3.486e^-4	0.805	NON_SYNONYMOUS_CODING CG33341 UPSTREAM CG42812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19795385	2R_19795385_SNP [dm3] 2R_23907862_SNP [dm6]	A	G	3.487e^-4	0.805	START_GAINED kcc UTR_5_PRIME kcc UPSTREAM Nap1 & 1 other DOWNSTREAM CR44806	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10197103	3L_10197103_SNP [dm3] 3L_10204003_SNP [dm6]	C	G	3.488e^-4	0.805	INTERGENIC
2L	16541487	2L_16541487_DEL [dm3] 2L_16541487_DEL [dm6]	TAC	T	3.497e^-4	0.805	INTERGENIC
2L	13805985	2L_13805985_SNP [dm3] 2L_13805985_SNP [dm6]	A	T	3.497e^-4	0.805	INTRON CAH1
2L	1696332	2L_1696332_SNP [dm3] 2L_1696332_SNP [dm6]	C	T	3.500e^-4	0.805	SYNONYMOUS_CODING chinmo UTR_3_PRIME chinmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19164414	2R_19164414_SNP [dm3] 2R_23276891_SNP [dm6]	T	C	3.504e^-4	0.805	INTERGENIC
2L	1207621	2L_1207621_SNP [dm3] 2L_1207621_SNP [dm6]	C	A	3.505e^-4	0.805	INTERGENIC
3R	4659343	3R_4659343_SNP [dm3] 3R_8833621_SNP [dm6]	G	A	3.513e^-4	0.805	SYNONYMOUS_CODING pyd INTRON pyd	TF binding site mE1_TFBS_cad
2R	6680976	2R_6680976_SNP [dm3] 2R_10793471_SNP [dm6]	T	A	3.521e^-4	0.805	DOWNSTREAM mthl13 INTRON CG33144
2R	3591343	2R_3591343_SNP [dm3] 2R_7703838_SNP [dm6]	T	C	3.526e^-4	0.805	UTR_3_PRIME CG34216 DOWNSTREAM CG30493
2L	16246938	2L_16246938_DEL [dm3] 2L_16246938_DEL [dm6]	TAGTT	T	3.528e^-4	0.805	UTR_3_PRIME PRL-1
2R	17256001	2R_17256001_SNP [dm3] 2R_21368496_SNP [dm6]	T	G	3.532e^-4	0.805	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	3507336	3R_3507336_SNP [dm3] 3R_7681614_SNP [dm6]	A	G	3.538e^-4	0.805	INTRON Nlg1
3R	14268481	3R_14268481_SNP [dm3] 3R_18442759_SNP [dm6]	G	C	3.542e^-4	0.805	INTRON fru
3L	18473886	3L_18473886_SNP [dm3] 3L_18480786_SNP [dm6]	A	C	3.542e^-4	0.805	INTERGENIC
X	6613655	X_6613655_SNP [dm3] X_6719622_SNP [dm6]	G	A	3.550e^-4	0.805	DOWNSTREAM CG3168 & 1 other INTERGENIC
3L	13416447	3L_13416447_SNP [dm3] 3L_13423347_SNP [dm6]	T	C	3.556e^-4	0.805	UTR_3_PRIME CG33263
3R	25555073	3R_25555073_SNP [dm3] 3R_29729351_SNP [dm6]	C	T	3.564e^-4	0.805	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da
3L	820159	3L_820159_DEL [dm3] 3L_820159_DEL [dm6]	TTGCCGCAGT	T	3.564e^-4	0.805	UPSTREAM CR43883 INTERGENIC
2R	12040620	2R_12040620_SNP [dm3] 2R_16153115_SNP [dm6]	T	C	3.566e^-4	0.805	INTRON lbk
3L	8997177	3L_8997177_SNP [dm3] 3L_9004077_SNP [dm6]	G	A	3.568e^-4	0.805	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9581213	3L_9581213_SNP [dm3] 3L_9588113_SNP [dm6]	A	G	3.570e^-4	0.805	INTRON CG42673	TF binding site mE1_TFBS_chinmo
3R	13499102	3R_13499102_SNP [dm3] 3R_17673380_SNP [dm6]	C	T	3.576e^-4	0.805	SYNONYMOUS_CODING ald DOWNSTREAM alt
X	9664043	X_9664043_SNP [dm3] X_9770010_SNP [dm6]	T	C	3.582e^-4	0.805	INTERGENIC
3R	18253146	3R_18253146_SNP [dm3] 3R_22427424_SNP [dm6]	G	T	3.586e^-4	0.805	SYNONYMOUS_CODING CG13847	TF binding site mE1_TFBS_chinmo
2R	7321865	2R_7321865_SNP [dm3] 2R_11434360_SNP [dm6]	G	A	3.586e^-4	0.805	INTERGENIC
3R	10682399	3R_10682399_INS [dm3] 3R_14856677_INS [dm6]	T	TTAAAGT	3.592e^-4	0.805	INTRON btsz
3R	26939507	3R_26939507_SNP [dm3] 3R_31113785_SNP [dm6]	T	A	3.609e^-4	0.805	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25219366	3R_25219366_SNP [dm3] 3R_29393644_SNP [dm6]	G	A	3.609e^-4	0.805	INTRON Ptp99A
3R	1654096	3R_1654096_DEL [dm3] 3R_5828374_DEL [dm6]	GGTTTGAGTC	G	3.612e^-4	0.805	INTERGENIC	transposable element FlyBase
3L	2879994	3L_2879994_SNP [dm3] 3L_2879994_SNP [dm6]	A	C	3.612e^-4	0.805	UPSTREAM CG43444 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12687841	3L_12687841_SNP [dm3] 3L_12694741_SNP [dm6]	G	A	3.616e^-4	0.805	INTRON mirr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	15379090	2L_15379090_SNP [dm3] 2L_15379090_SNP [dm6]	C	G	3.632e^-4	0.805	INTERGENIC
2L	760097	2L_760097_SNP [dm3] 2L_760097_SNP [dm6]	T	C	3.648e^-4	0.805	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo
2R	3837375	2R_3837375_DEL [dm3] 2R_7949870_DEL [dm6]	CTATAATATAC...	C	3.651e^-4	0.805	UTR_5_PRIME CG11165 UPSTREAM CG30378 INTRON CG14764	TF binding site BDTNP1_TFBS_da
2R	12223268	2R_12223268_SNP [dm3] 2R_16335763_SNP [dm6]	C	T	3.661e^-4	0.805	UPSTREAM Hmgs INTRON Vha44	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	1782506	3R_1782506_SNP [dm3] 3R_5956784_SNP [dm6]	A	G	3.663e^-4	0.805	INTRON CG34113
3L	2686113	3L_2686113_SNP [dm3] 3L_2686113_SNP [dm6]	C	T	3.665e^-4	0.805	INTRON Fife
2L	21280067	2L_21280067_SNP [dm3] 2L_21280067_SNP [dm6]	T	G	3.695e^-4	0.805	SYNONYMOUS_CODING CG8671 INTRON CG8671	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6711497	3R_6711497_SNP [dm3] 3R_10885775_SNP [dm6]	T	G	3.700e^-4	0.805	UTR_5_PRIME Leash UPSTREAM CG14696	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15137830	2L_15137830_DEL [dm3] 2L_15137830_DEL [dm6]	ATAACAATTTGATGATTTAG...	A	3.708e^-4	0.805	INTERGENIC
2L	9203112	2L_9203112_INS [dm3] 2L_9203112_INS [dm6]	G	GCA	3.708e^-4	0.805	INTRON tai	TF binding site mE1_TFBS_Trl
3L	3526512	3L_3526512_SNP [dm3] 3L_3526512_SNP [dm6]	A	G	3.717e^-4	0.805	INTRON Eip63E
X	562745	X_562745_DEL [dm3] X_668712_DEL [dm6]	CCAAAAC	C	3.725e^-4	0.805	INTERGENIC
3L	5656673	3L_5656673_SNP [dm3] 3L_5663573_SNP [dm6]	G	A	3.725e^-4	0.805	INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1024550	2L_1024550_DEL [dm3] 2L_1024550_DEL [dm6]	TCTAATCCATTGT...	T	3.726e^-4	0.805	INTRON IA-2
2R	11920993	2R_11920993_SNP [dm3] 2R_16033488_SNP [dm6]	A	G	3.728e^-4	0.805	INTRON SP2353
2L	2708083	2L_2708083_SNP [dm3] 2L_2708083_SNP [dm6]	T	C	3.730e^-4	0.805	INTRON CG31690
2R	7773221	2R_7773221_SNP [dm3] 2R_11885716_SNP [dm6]	T	A	3.734e^-4	0.805	UPSTREAM cuff & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26658076	3R_26658076_SNP [dm3] 3R_30832354_SNP [dm6]	G	A	3.738e^-4	0.805	INTRON CG15544
3R	4582146	3R_4582146_SNP [dm3] 3R_8756424_SNP [dm6]	G	A	3.740e^-4	0.805	DOWNSTREAM CR44228 INTRON CG11768 & 1 other
2R	13639020	2R_13639020_SNP [dm3] 2R_17751515_SNP [dm6]	C	G	3.747e^-4	0.805	SYNONYMOUS_CODING CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24951687	3R_24951687_SNP [dm3] 3R_29125965_SNP [dm6]	C	T	3.753e^-4	0.805	SYNONYMOUS_CODING CG11880	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10022355	X_10022355_SNP [dm3] X_10128322_SNP [dm6]	G	A	3.765e^-4	0.805	INTRON CR44894 & 1 other
2L	16397794	2L_16397794_SNP [dm3] 2L_16397794_SNP [dm6]	G	T	3.768e^-4	0.805	INTERGENIC
3R	4583951	3R_4583951_DEL [dm3] 3R_8758229_DEL [dm6]	TT	T	3.773e^-4	0.805	INTRON CG11768 & 1 other
2R	19701598	2R_19701598_SNP [dm3] 2R_23814075_SNP [dm6]	G	A	3.776e^-4	0.805	INTRON CG4797 EXON CR44807	TF binding site mE1_TFBS_chinmo
2L	15557912	2L_15557912_SNP [dm3] 2L_15557912_SNP [dm6]	G	A	3.788e^-4	0.805	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13157211	X_13157211_SNP [dm3] X_13263178_SNP [dm6]	A	C	3.796e^-4	0.805	UTR_3_PRIME HDAC4 DOWNSTREAM comt & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9846761	2L_9846761_SNP [dm3] 2L_9846761_SNP [dm6]	T	G	3.804e^-4	0.805	INTRON nAChRalpha6
2L	15562054	2L_15562054_SNP [dm3] 2L_15562054_SNP [dm6]	C	T	3.808e^-4	0.805	INTRON kek3
2L	1357028	2L_1357028_SNP [dm3] 2L_1357028_SNP [dm6]	G	A	3.818e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7073594	2R_7073594_SNP [dm3] 2R_11186089_SNP [dm6]	G	A	3.825e^-4	0.805	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	6880345	3R_6880345_SNP [dm3] 3R_11054623_SNP [dm6]	A	G	3.826e^-4	0.805	INTERGENIC
3L	13953208	3L_13953208_SNP [dm3] 3L_13960108_SNP [dm6]	T	G	3.826e^-4	0.805	INTRON CG32137
2L	13745858	2L_13745858_SNP [dm3] 2L_13745858_SNP [dm6]	A	C	3.829e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14674758	3R_14674758_SNP [dm3] 3R_18849036_SNP [dm6]	T	A	3.829e^-4	0.805	UTR_5_PRIME CG18208	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10022352	X_10022352_SNP [dm3] X_10128319_SNP [dm6]	G	A	3.845e^-4	0.805	INTRON CR44894 & 1 other
2R	14814095	2R_14814095_SNP [dm3] 2R_18926590_SNP [dm6]	A	G	3.849e^-4	0.805	INTRON sano
3L	5528754	3L_5528754_SNP [dm3] 3L_5535654_SNP [dm6]	C	A	3.850e^-4	0.805	NON_SYNONYMOUS_CODING CG13285
2L	1533793	2L_1533793_DEL [dm3] 2L_1533793_DEL [dm6]	GCTCTCTT	CA	3.854e^-4	0.805	INTERGENIC
3R	26216822	3R_26216822_SNP [dm3] 3R_30391100_SNP [dm6]	C	A	3.856e^-4	0.805	DOWNSTREAM Fer2LCH INTERGENIC
2R	17110835	2R_17110835_SNP [dm3] 2R_21223330_SNP [dm6]	G	C	3.864e^-4	0.805	INTRON ASPP
2R	6787899	2R_6787899_SNP [dm3] 2R_10900394_SNP [dm6]	A	G	3.875e^-4	0.805	INTERGENIC
3R	4605782	3R_4605782_SNP [dm3] 3R_8780060_SNP [dm6]	A	G	3.880e^-4	0.805	UPSTREAM CG33191 & 1 other DOWNSTREAM CG33189 & 1 other INTRON Pif1B & 1 other	TF binding site mE1_TFBS_cad
3R	22011249	3R_22011249_SNP [dm3] 3R_26185527_SNP [dm6]	T	C	3.887e^-4	0.805	UTR_5_PRIME CG31086 UTR_3_PRIME CG31323 UPSTREAM CG31086 DOWNSTREAM CG31323
3R	3154203	3R_3154203_SNP [dm3] 3R_7328481_SNP [dm6]	T	G	3.892e^-4	0.805	INTERGENIC
X	21174357	X_21174357_SNP [dm3] X_21303330_SNP [dm6]	C	A	3.897e^-4	0.805	UPSTREAM CG1718 INTRON CG1718
3L	18239752	3L_18239752_SNP [dm3] 3L_18246652_SNP [dm6]	T	G	3.900e^-4	0.805	INTERGENIC
2L	15986953	2L_15986953_SNP [dm3] 2L_15986953_SNP [dm6]	G	C	3.901e^-4	0.805	INTERGENIC
3R	15300848	3R_15300848_SNP [dm3] 3R_19475126_SNP [dm6]	G	A	3.905e^-4	0.805	INTRON Dys
3R	6711434	3R_6711434_SNP [dm3] 3R_10885712_SNP [dm6]	C	T	3.906e^-4	0.805	UTR_5_PRIME Leash UPSTREAM CG14696	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6854684	3R_6854684_SNP [dm3] 3R_11028962_SNP [dm6]	T	C	3.909e^-4	0.805	INTRON CG34114
3R	25202739	3R_25202739_SNP [dm3] 3R_29377017_SNP [dm6]	G	A	3.910e^-4	0.805	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25202740	3R_25202740_SNP [dm3] 3R_29377018_SNP [dm6]	G	A	3.910e^-4	0.805	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25202750	3R_25202750_SNP [dm3] 3R_29377028_SNP [dm6]	T	A	3.910e^-4	0.805	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25202796	3R_25202796_DEL [dm3] 3R_29377074_DEL [dm6]	TAACATAT	T	3.910e^-4	0.805	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	5203942	X_5203942_SNP [dm3] X_5309909_SNP [dm6]	G	A	3.910e^-4	0.805	UPSTREAM Cdk7 DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_jumu
2R	12975708	2R_12975708_INS [dm3] 2R_17088203_INS [dm6]	C	CCACATC	3.911e^-4	0.805	UPSTREAM CG30460 DOWNSTREAM Sply INTERGENIC
3R	22856141	3R_22856141_SNP [dm3] 3R_27030419_SNP [dm6]	G	A	3.913e^-4	0.805	INTRON RYa-R
3L	3913056	3L_3913056_SNP [dm3] 3L_3913056_SNP [dm6]	T	C	3.914e^-4	0.805	INTRON Eip63F-1
X	18333239	X_18333239_SNP [dm3] X_18439206_SNP [dm6]	G	A	3.915e^-4	0.805	NON_SYNONYMOUS_CODING CG32551 UPSTREAM CG43841 DOWNSTREAM CG6290 INTRON CG32548
3L	8042351	3L_8042351_SNP [dm3] 3L_8049251_SNP [dm6]	T	A	3.925e^-4	0.805	INTRON nmo
X	13216397	X_13216397_SNP [dm3] X_13322364_SNP [dm6]	C	T	3.927e^-4	0.805	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4445709	X_4445709_SNP [dm3] X_4551676_SNP [dm6]	G	A	3.928e^-4	0.805	SYNONYMOUS_CODING CG11436 UPSTREAM CG3527 INTRON CR32773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	15193891	X_15193891_SNP [dm3] X_15299858_SNP [dm6]	A	G	3.945e^-4	0.805	UPSTREAM gce INTRON gce
3R	18578308	3R_18578308_SNP [dm3] 3R_22752586_SNP [dm6]	T	G	3.946e^-4	0.805	INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2L	15562053	2L_15562053_SNP [dm3] 2L_15562053_SNP [dm6]	C	A	3.948e^-4	0.805	INTRON kek3
3R	26947081	3R_26947081_SNP [dm3] 3R_31121359_SNP [dm6]	T	C	3.951e^-4	0.805	INTERGENIC
2L	15088053	2L_15088053_SNP [dm3] 2L_15088053_SNP [dm6]	C	T	3.961e^-4	0.805	SYNONYMOUS_CODING CG15270
2L	16430817	2L_16430817_SNP [dm3] 2L_16430817_SNP [dm6]	A	G	3.961e^-4	0.805	INTRON CG5888
3R	26216623	3R_26216623_SNP [dm3] 3R_30390901_SNP [dm6]	T	A	3.968e^-4	0.805	DOWNSTREAM Fer2LCH INTERGENIC
3L	19325442	3L_19325442_SNP [dm3] 3L_19332342_SNP [dm6]	A	T	3.968e^-4	0.805	INTRON pip
X	19327904	X_19327904_SNP [dm3] X_19433871_SNP [dm6]	T	C	3.971e^-4	0.805	INTRON kek5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3268106	2L_3268106_SNP [dm3] 2L_3268106_SNP [dm6]	G	A	3.972e^-4	0.805	UPSTREAM CR44484 INTERGENIC
3R	22010367	3R_22010367_SNP [dm3] 3R_26184645_SNP [dm6]	G	T	3.976e^-4	0.805	UTR_3_PRIME CG31323 UPSTREAM CG31086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15615834	2L_15615834_SNP [dm3] 2L_15615834_SNP [dm6]	A	G	3.979e^-4	0.805	SYNONYMOUS_CODING CG15253
3R	23904807	3R_23904807_SNP [dm3] 3R_28079085_SNP [dm6]	C	T	3.986e^-4	0.805	INTRON CG34362
2L	5100577	2L_5100577_SNP [dm3] 2L_5100577_SNP [dm6]	T	A	3.995e^-4	0.805	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	5474421	2L_5474421_SNP [dm3] 2L_5474421_SNP [dm6]	T	A	3.998e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3R	26392715	3R_26392715_DEL [dm3] 3R_30566993_DEL [dm6]	CA	C	4.010e^-4	0.805	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12082446	3R_12082446_SNP [dm3] 3R_16256724_SNP [dm6]	C	T	4.011e^-4	0.805	INTRON tara	TF binding site mE1_TFBS_cad mE1_TFBS_eve
2L	12760060	2L_12760060_SNP [dm3] 2L_12760060_SNP [dm6]	T	A	4.015e^-4	0.805	DOWNSTREAM CG15483 INTERGENIC
3R	3408019	3R_3408019_SNP [dm3] 3R_7582297_SNP [dm6]	G	A	4.017e^-4	0.805	INTRON CG34127
2R	7292595	2R_7292595_SNP [dm3] 2R_11405090_SNP [dm6]	T	G	4.018e^-4	0.805	UPSTREAM CG7759 DOWNSTREAM tRNA:CR45107 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1691711	3R_1691711_SNP [dm3] 3R_5865989_SNP [dm6]	G	T	4.019e^-4	0.805	INTRON CG34113
X	12565538	X_12565538_SNP [dm3] X_12671505_SNP [dm6]	C	T	4.020e^-4	0.805	INTRON Tis11
2L	13958861	2L_13958861_SNP [dm3] 2L_13958861_SNP [dm6]	A	T	4.024e^-4	0.805	INTRON NimA
2L	6181418	2L_6181418_SNP [dm3] 2L_6181418_SNP [dm6]	C	T	4.035e^-4	0.805	INTRON CG34380
2L	16003785	2L_16003785_SNP [dm3] 2L_16003785_SNP [dm6]	T	G	4.038e^-4	0.805	UPSTREAM CG13245 & 2 others INTRON beat-Ic EXON CR43826
2L	13958949	2L_13958949_SNP [dm3] 2L_13958949_SNP [dm6]	C	T	4.039e^-4	0.805	INTRON NimA
3R	1785600	3R_1785600_SNP [dm3] 3R_5959878_SNP [dm6]	A	T	4.039e^-4	0.805	UPSTREAM CG34113 DOWNSTREAM CG11373 INTERGENIC
3R	4903558	3R_4903558_SNP [dm3] 3R_9077836_SNP [dm6]	C	T	4.045e^-4	0.805	INTRON pum
3L	5526756	3L_5526756_SNP [dm3] 3L_5533656_SNP [dm6]	C	T	4.046e^-4	0.805	DOWNSTREAM CG13285 INTERGENIC
2R	19164453	2R_19164453_SNP [dm3] 2R_23276930_SNP [dm6]	C	T	4.078e^-4	0.805	INTERGENIC
2L	4298330	2L_4298330_SNP [dm3] 2L_4298330_SNP [dm6]	T	A	4.080e^-4	0.805	INTRON tutl
3L	4797525	3L_4797525_SNP [dm3] 3L_4797525_SNP [dm6]	C	G	4.087e^-4	0.805	INTERGENIC
3L	10603871	3L_10603871_SNP [dm3] 3L_10610771_SNP [dm6]	G	A	4.091e^-4	0.805	INTERGENIC
X	11911145	X_11911145_SNP [dm3] X_12017112_SNP [dm6]	T	G	4.106e^-4	0.805	UTR_3_PRIME regucalcin DOWNSTREAM Chrac-16 & 1 other	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	1828217	3R_1828217_SNP [dm3] 3R_6002495_SNP [dm6]	T	G	4.109e^-4	0.805	UTR_3_PRIME Rm62 INTRON Rm62	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13615822	3R_13615822_SNP [dm3] 3R_17790100_SNP [dm6]	T	C	4.112e^-4	0.805	INTRON CG43102
3L	15471942	3L_15471942_SNP [dm3] 3L_15478842_SNP [dm6]	A	G	4.113e^-4	0.805	INTERGENIC
3L	4205124	3L_4205124_SNP [dm3] 3L_4205124_SNP [dm6]	G	T	4.117e^-4	0.805	UPSTREAM CG15005 INTRON CG43367
3R	1672245	3R_1672245_SNP [dm3] 3R_5846523_SNP [dm6]	T	C	4.126e^-4	0.805	UTR_3_PRIME CG1213 UPSTREAM CG14676	TF binding site mE1_TFBS_cad
2R	13864476	2R_13864476_SNP [dm3] 2R_17976971_SNP [dm6]	G	T	4.127e^-4	0.805	INTRON dpr13
3L	12689352	3L_12689352_SNP [dm3] 3L_12696252_SNP [dm6]	A	G	4.128e^-4	0.805	INTRON mirr	TF binding site BDTNP1_TFBS_dl
3R	20194119	3R_20194119_SNP [dm3] 3R_24368397_SNP [dm6]	A	G	4.133e^-4	0.805	NON_SYNONYMOUS_CODING CG33341 UPSTREAM CG42812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18657455	2L_18657455_SNP [dm3] 2L_18657455_SNP [dm6]	A	T	4.134e^-4	0.805	INTRON MESR3
X	16875635	X_16875635_SNP [dm3] X_16981602_SNP [dm6]	G	A	4.146e^-4	0.805	INTRON CG45002
3L	18480276	3L_18480276_SNP [dm3] 3L_18487176_SNP [dm6]	G	A	4.151e^-4	0.805	SYNONYMOUS_CODING AstC-R2
3R	15252527	3R_15252527_SNP [dm3] 3R_19426805_SNP [dm6]	T	G	4.154e^-4	0.805	INTRON CG31221
2L	2512502	2L_2512502_SNP [dm3] 2L_2512502_SNP [dm6]	A	G	4.157e^-4	0.805	INTERGENIC
2L	18342872	2L_18342872_SNP [dm3] 2L_18342872_SNP [dm6]	C	A	4.157e^-4	0.805	INTRON Fas3
2L	521349	2L_521349_INS [dm3] 2L_521349_INS [dm6]	G	GGAAG	4.172e^-4	0.805	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	3126296	2L_3126296_SNP [dm3] 2L_3126296_SNP [dm6]	A	G	4.175e^-4	0.805	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26939686	3R_26939686_SNP [dm3] 3R_31113964_SNP [dm6]	T	G	4.179e^-4	0.805	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7488166	3L_7488166_SNP [dm3] 3L_7495066_SNP [dm6]	G	A	4.180e^-4	0.805	SYNONYMOUS_CODING Cyp4d8	TF binding site mE1_TFBS_cad
X	8139652	X_8139652_SNP [dm3] X_8245619_SNP [dm6]	T	C	4.183e^-4	0.805	INTRON Trxr-1
3R	11298287	3R_11298287_SNP [dm3] 3R_15472565_SNP [dm6]	C	T	4.188e^-4	0.805	INTRON AdamTS-A	TF binding site mE1_TFBS_zfh1
3L	1403704	3L_1403704_SNP [dm3] 3L_1403704_SNP [dm6]	C	A	4.188e^-4	0.805	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2R	12339332	2R_12339332_SNP [dm3] 2R_16451827_SNP [dm6]	G	T	4.191e^-4	0.805	INTERGENIC
2L	22322762	2L_22322762_SNP [dm3] 2L_22322762_SNP [dm6]	G	T	4.197e^-4	0.805	INTRON CG17018
2R	1648594	2R_1648594_SNP [dm3] 2R_5761089_SNP [dm6]	T	G	4.200e^-4	0.805	UPSTREAM CG7791 INTRON Gp210	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13793044	2R_13793044_SNP [dm3] 2R_17905539_SNP [dm6]	G	A	4.204e^-4	0.805	INTRON Elk
2R	13146361	2R_13146361_SNP [dm3] 2R_17258856_SNP [dm6]	C	G	4.205e^-4	0.805	UPSTREAM CG43108 INTRON mbl
3R	21353333	3R_21353333_SNP [dm3] 3R_25527611_SNP [dm6]	G	A	4.212e^-4	0.805	INTRON msi
2R	19371089	2R_19371089_SNP [dm3] 2R_23483566_SNP [dm6]	G	T	4.218e^-4	0.805	INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4493461	X_4493461_SNP [dm3] X_4599428_SNP [dm6]	T	C	4.220e^-4	0.805	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
2L	4746423	2L_4746423_SNP [dm3] 2L_4746423_SNP [dm6]	T	A	4.221e^-4	0.805	INTRON CG15630
3L	7822777	3L_7822777_SNP [dm3] 3L_7829677_SNP [dm6]	T	C	4.223e^-4	0.805	INTRON Pdp1
3R	25202720	3R_25202720_SNP [dm3] 3R_29376998_SNP [dm6]	G	A	4.228e^-4	0.805	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12977065	X_12977065_SNP [dm3] X_13083032_SNP [dm6]	G	A	4.231e^-4	0.805	SYNONYMOUS_CODING hep UTR_3_PRIME hep
X	11178568	X_11178568_INS [dm3] X_11284535_INS [dm6]	A	ATTGTA	4.232e^-4	0.805	INTRON CG44422
3L	3625703	3L_3625703_SNP [dm3] 3L_3625703_SNP [dm6]	A	C	4.239e^-4	0.805	UPSTREAM dar1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15078073	2R_15078073_SNP [dm3] 2R_19190568_SNP [dm6]	G	T	4.240e^-4	0.805	INTRON hppy
3R	15674059	3R_15674059_SNP [dm3] 3R_19848337_SNP [dm6]	C	G	4.242e^-4	0.805	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11430806	2L_11430806_SNP [dm3] 2L_11430806_SNP [dm6]	T	A	4.245e^-4	0.805	INTERGENIC
X	21346281	X_21346281_SNP [dm3] X_21475254_SNP [dm6]	C	A	4.247e^-4	0.805	INTERGENIC
2L	15054321	2L_15054321_SNP [dm3] 2L_15054321_SNP [dm6]	A	T	4.250e^-4	0.805	INTRON ck	regulatory region REDfly_CRMs
3L	18470955	3L_18470955_SNP [dm3] 3L_18477855_SNP [dm6]	C	T	4.253e^-4	0.805	UPSTREAM CR44673 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	7867889	3R_7867889_SNP [dm3] 3R_12042167_SNP [dm6]	G	C	4.255e^-4	0.805	SYNONYMOUS_CODING CG14736
3L	7902051	3L_7902051_SNP [dm3] 3L_7908951_SNP [dm6]	T	C	4.258e^-4	0.805	INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	15088873	2L_15088873_SNP [dm3] 2L_15088873_SNP [dm6]	A	T	4.268e^-4	0.805	INTRON CG15270
2L	1357350	2L_1357350_SNP [dm3] 2L_1357350_SNP [dm6]	C	T	4.276e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4709095	3R_4709095_SNP [dm3] 3R_8883373_SNP [dm6]	A	C	4.279e^-4	0.805	INTRON pyd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	21174450	X_21174450_SNP [dm3] X_21303423_SNP [dm6]	T	C	4.282e^-4	0.805	UPSTREAM CG1718 INTRON CG1718
3R	4464446	3R_4464446_SNP [dm3] 3R_8638724_SNP [dm6]	T	G	4.293e^-4	0.805	INTERGENIC
3R	19062789	3R_19062789_DEL [dm3] 3R_23237067_DEL [dm6]	ACG	A	4.293e^-4	0.805	INTRON CG4467
2R	19795813	2R_19795813_SNP [dm3] 2R_23908290_SNP [dm6]	T	A	4.296e^-4	0.805	UTR_5_PRIME kcc UPSTREAM Nap1 & 1 other DOWNSTREAM CR44806 INTRON kcc	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14343537	3R_14343537_SNP [dm3] 3R_18517815_SNP [dm6]	A	T	4.297e^-4	0.805	INTRON fru
2R	11554255	2R_11554255_SNP [dm3] 2R_15666750_SNP [dm6]	A	G	4.298e^-4	0.805	INTRON fus	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	7889209	3R_7889209_SNP [dm3] 3R_12063487_SNP [dm6]	G	A	4.303e^-4	0.805	UPSTREAM CG14740 INTERGENIC
3R	4316924	3R_4316924_SNP [dm3] 3R_8491202_SNP [dm6]	G	A	4.303e^-4	0.805	INTERGENIC
2L	15378992	2L_15378992_SNP [dm3] 2L_15378992_SNP [dm6]	G	A	4.304e^-4	0.805	INTERGENIC
3R	13672247	3R_13672247_SNP [dm3] 3R_17846525_SNP [dm6]	G	T	4.310e^-4	0.805	INTRON tinc
2R	6978252	2R_6978252_DEL [dm3] 2R_11090747_DEL [dm6]	GG	G	4.321e^-4	0.805	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	4352176	2R_4352176_SNP [dm3] 2R_8464671_SNP [dm6]	A	C	4.322e^-4	0.805	SYNONYMOUS_CODING Mal-A5 UPSTREAM Mal-A6	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	1752484	2L_1752484_SNP [dm3] 2L_1752484_SNP [dm6]	G	C	4.322e^-4	0.805	SYNONYMOUS_CODING CG17648 UPSTREAM CG17712	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	17855605	X_17855605_SNP [dm3] X_17961572_SNP [dm6]	A	G	4.322e^-4	0.805	INTRON Sh
3R	14618523	3R_14618523_INS [dm3] 3R_18792801_INS [dm6]	T	TTT	4.332e^-4	0.805	UPSTREAM CG7720 INTRON CG7720
2L	15311776	2L_15311776_SNP [dm3] 2L_15311776_SNP [dm6]	G	A	4.344e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA
2L	3384937	2L_3384937_SNP [dm3] 2L_3384937_SNP [dm6]	A	G	4.345e^-4	0.805	INTERGENIC
2L	19508857	2L_19508857_SNP [dm3] 2L_19508857_SNP [dm6]	C	A	4.347e^-4	0.805	UPSTREAM CG10188 DOWNSTREAM CG10186 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	19038119	2R_19038119_SNP [dm3] 2R_23150596_SNP [dm6]	G	A	4.359e^-4	0.805	INTERGENIC
2L	8080891	2L_8080891_SNP [dm3] 2L_8080891_SNP [dm6]	A	T	4.362e^-4	0.805	INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	26080594	3R_26080594_SNP [dm3] 3R_30254872_SNP [dm6]	G	T	4.367e^-4	0.805	DOWNSTREAM CG18404 INTERGENIC
3L	17832669	3L_17832669_SNP [dm3] 3L_17839569_SNP [dm6]	T	G	4.372e^-4	0.805	UTR_3_PRIME Grd DOWNSTREAM CG5577
3R	9171450	3R_9171450_DEL [dm3] 3R_13345728_DEL [dm6]	AAGGACCCGACTGATGTTA...	A	4.372e^-4	0.805	DOWNSTREAM PK2-R1 INTERGENIC
2R	11178823	2R_11178823_SNP [dm3] 2R_15291318_SNP [dm6]	A	T	4.372e^-4	0.805	UPSTREAM Trpm INTRON Trpm
2L	10774992	2L_10774992_SNP [dm3] 2L_10774992_SNP [dm6]	T	C	4.374e^-4	0.805	INTRON CG31869
3R	6565042	3R_6565042_SNP [dm3] 3R_10739320_SNP [dm6]	T	C	4.377e^-4	0.805	INTRON TkR86C	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	6303618	3R_6303618_SNP [dm3] 3R_10477896_SNP [dm6]	A	G	4.381e^-4	0.805	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14915754	2R_14915754_SNP [dm3] 2R_19028249_SNP [dm6]	C	G	4.397e^-4	0.805	INTRON 5-HT1B
3L	18361014	3L_18361014_SNP [dm3] 3L_18367914_SNP [dm6]	T	G	4.402e^-4	0.805	INTERGENIC
3L	6893343	3L_6893343_SNP [dm3] 3L_6900243_SNP [dm6]	T	G	4.413e^-4	0.805	INTERGENIC	TF binding site mE1_TFBS_Kr

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.327e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.00238

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	12.2478	0.0022

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1620 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	7192162	3R_7192162_DEL [dm3] 3R_11366440_DEL [dm6]	GG	G	2.543e^-7	0.477	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26537608	3R_26537608_INS [dm3] 3R_30711886_INS [dm6]	C	CGTATACC	2.074e^-6	1	INTERGENIC
2L	2792776	2L_2792776_SNP [dm3] 2L_2792776_SNP [dm6]	G	A	2.502e^-6	1	UTR_3_PRIME Syt1 INTRON Syt1
2L	2792775	2L_2792775_SNP [dm3] 2L_2792775_SNP [dm6]	A	T	2.747e^-6	1	UTR_3_PRIME Syt1 INTRON Syt1
2R	17547598	2R_17547598_SNP [dm3] 2R_21660093_SNP [dm6]	A	G	2.812e^-6	1	UPSTREAM Rae1 DOWNSTREAM pirk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	4385833	2L_4385833_SNP [dm3] 2L_4385833_SNP [dm6]	C	G	5.131e^-6	1	DOWNSTREAM Psf2 INTRON CG3338	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	4957319	2L_4957319_SNP [dm3] 2L_4957319_SNP [dm6]	C	G	5.452e^-6	1	SYNONYMOUS_CODING Marcal1
2R	15463535	2R_15463535_SNP [dm3] 2R_19576030_SNP [dm6]	A	G	5.912e^-6	1	INTRON sm
X	7787839	X_7787839_SNP [dm3] X_7893806_SNP [dm6]	G	A	8.171e^-6	1	UPSTREAM p115 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco
2L	10884587	2L_10884587_SNP [dm3] 2L_10884587_SNP [dm6]	A	G	8.183e^-6	1	INTERGENIC
3L	13818196	3L_13818196_INS [dm3] 3L_13825096_INS [dm6]	A	ACTTTAAAGTTCTCAA...	8.850e^-6	1	INTERGENIC
2L	16990685	2L_16990685_SNP [dm3] 2L_16990685_SNP [dm6]	C	A	9.762e^-6	1	INTRON beat-IIIb
X	8302665	X_8302665_SNP [dm3] X_8408632_SNP [dm6]	C	G	1.049e^-5	1	UTR_3_PRIME lawc UPSTREAM Trf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25555073	3R_25555073_SNP [dm3] 3R_29729351_SNP [dm6]	C	T	1.051e^-5	1	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da
2L	15616807	2L_15616807_SNP [dm3] 2L_15616807_SNP [dm6]	G	A	1.055e^-5	1	UPSTREAM CG11865 & 1 other INTERGENIC
3R	25555058	3R_25555058_SNP [dm3] 3R_29729336_SNP [dm6]	C	T	1.093e^-5	1	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da
3L	9692059	3L_9692059_INS [dm3] 3L_9698959_INS [dm6]	T	TCCCT	1.220e^-5	1	SPLICE_SITE_REGION UbcD4 INTRON UbcD4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14120040	2R_14120040_SNP [dm3] 2R_18232535_SNP [dm6]	A	T	1.418e^-5	1	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14120057	2R_14120057_SNP [dm3] 2R_18232552_SNP [dm6]	T	A	1.418e^-5	1	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	15463531	2R_15463531_DEL [dm3] 2R_19576026_DEL [dm6]	CC	C	1.439e^-5	1	INTRON sm
3R	9125445	3R_9125445_SNP [dm3] 3R_13299723_SNP [dm6]	T	C	1.577e^-5	1	INTRON CG8774
3L	4146277	3L_4146277_SNP [dm3] 3L_4146277_SNP [dm6]	C	A	1.598e^-5	1	DOWNSTREAM CG32260 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26375037	3R_26375037_SNP [dm3] 3R_30549315_SNP [dm6]	C	T	1.627e^-5	1	INTRON tmod
2R	6736284	2R_6736284_SNP [dm3] 2R_10848779_SNP [dm6]	G	A	1.641e^-5	1	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5079148	2L_5079148_SNP [dm3] 2L_5079148_SNP [dm6]	G	T	1.756e^-5	1	UTR_5_PRIME pgant5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17991015	2R_17991015_SNP [dm3] 2R_22103510_SNP [dm6]	C	T	1.824e^-5	1	SYNONYMOUS_CODING CG6613
3R	26537669	3R_26537669_SNP [dm3] 3R_30711947_SNP [dm6]	T	C	1.847e^-5	1	INTERGENIC
X	2237585	X_2237585_SNP [dm3] X_2343552_SNP [dm6]	T	C	1.880e^-5	1	UTR_3_PRIME phl DOWNSTREAM mRpL14	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	5072063	3L_5072063_SNP [dm3] 3L_5072063_SNP [dm6]	A	G	2.032e^-5	1	INTRON Con
2R	17990991	2R_17990991_SNP [dm3] 2R_22103486_SNP [dm6]	C	T	2.038e^-5	1	SYNONYMOUS_CODING CG6613
X	2236875	X_2236875_SNP [dm3] X_2342842_SNP [dm6]	T	G	2.201e^-5	1	INTRON phl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19865869	2R_19865869_SNP [dm3] 2R_23978346_SNP [dm6]	C	G	2.230e^-5	1	UPSTREAM Sox14 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	20787688	3R_20787688_SNP [dm3] 3R_24961966_SNP [dm6]	G	A	2.256e^-5	1	INTERGENIC
X	9108311	X_9108311_SNP [dm3] X_9214278_SNP [dm6]	C	G	2.395e^-5	1	UPSTREAM Obp8a INTERGENIC
3R	25566995	3R_25566995_SNP [dm3] 3R_29741273_SNP [dm6]	C	A	2.433e^-5	1	SYNONYMOUS_CODING CG1969 DOWNSTREAM CG7609
2L	21878068	2L_21878068_SNP [dm3] 2L_21878068_SNP [dm6]	T	C	2.468e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	26579525	3R_26579525_SNP [dm3] 3R_30753803_SNP [dm6]	G	A	2.555e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	1152768	X_1152768_SNP [dm3] X_1258735_SNP [dm6]	C	T	2.565e^-5	1	INTRON Atf3
3R	14683686	3R_14683686_SNP [dm3] 3R_18857964_SNP [dm6]	T	A	2.659e^-5	1	INTERGENIC
3R	26543797	3R_26543797_SNP [dm3] 3R_30718075_SNP [dm6]	G	A	2.687e^-5	1	INTERGENIC
2L	16195736	2L_16195736_SNP [dm3] 2L_16195736_SNP [dm6]	C	G	2.728e^-5	1	UPSTREAM CR44734 DOWNSTREAM CR44735 INTERGENIC
2R	14119833	2R_14119833_SNP [dm3] 2R_18232328_SNP [dm6]	A	G	2.891e^-5	1	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	20787696	3R_20787696_SNP [dm3] 3R_24961974_SNP [dm6]	G	T	2.961e^-5	1	INTERGENIC
3R	9105926	3R_9105926_SNP [dm3] 3R_13280204_SNP [dm6]	T	C	3.042e^-5	1	INTRON CG8630
X	13220902	X_13220902_SNP [dm3] X_13326869_SNP [dm6]	T	A	3.121e^-5	1	INTRON IP3K2
X	7782104	X_7782104_SNP [dm3] X_7888071_SNP [dm6]	T	C	3.127e^-5	1	SYNONYMOUS_CODING CG10932 DOWNSTREAM Nek2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7784118	X_7784118_SNP [dm3] X_7890085_SNP [dm6]	G	A	3.185e^-5	1	NON_SYNONYMOUS_CODING Nek2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
X	7060724	X_7060724_SNP [dm3] X_7166691_SNP [dm6]	C	T	3.288e^-5	1	INTRON CG9650 EXON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27054989	3R_27054989_SNP [dm3] 3R_31229267_SNP [dm6]	A	G	3.449e^-5	1	UTR_3_PRIME CG12054 DOWNSTREAM CG12054	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3R	13102963	3R_13102963_SNP [dm3] 3R_17277241_SNP [dm6]	G	T	3.663e^-5	1	INTERGENIC
2L	915583	2L_915583_SNP [dm3] 2L_915583_SNP [dm6]	A	C	3.677e^-5	1	NON_SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10691427	3R_10691427_DEL [dm3] 3R_14865705_DEL [dm6]	AAGGGGTTAAGT...	A	3.953e^-5	1	INTRON btsz
X	9108324	X_9108324_SNP [dm3] X_9214291_SNP [dm6]	C	A	3.986e^-5	1	UPSTREAM Obp8a INTERGENIC
2R	17992269	2R_17992269_SNP [dm3] 2R_22104764_SNP [dm6]	C	T	4.095e^-5	1	SYNONYMOUS_CODING CG6613
2R	7512851	2R_7512851_SNP [dm3] 2R_11625346_SNP [dm6]	C	A	4.119e^-5	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15463534	2R_15463534_SNP [dm3] 2R_19576029_SNP [dm6]	A	C	4.148e^-5	1	INTRON sm
2L	15442856	2L_15442856_SNP [dm3] 2L_15442856_SNP [dm6]	T	C	4.241e^-5	1	DOWNSTREAM CR44862 INTERGENIC
2R	20255460	2R_20255460_SNP [dm3] 2R_24367937_SNP [dm6]	A	G	4.253e^-5	1	INTRON bs & 1 other	TF binding site mE1_TFBS_inv
3R	826748	3R_826748_SNP [dm3] 3R_5001026_SNP [dm6]	C	G	4.435e^-5	1	INTRON CG2022
X	3421469	X_3421469_INS [dm3] X_3527436_INS [dm6]	A	AA	4.510e^-5	1	INTRON CG32791
2R	2664964	2R_2664964_SNP [dm3] 2R_6777459_SNP [dm6]	T	G	4.557e^-5	1	UPSTREAM Epac INTRON Epac	TF binding site mE1_TFBS_cad
2R	13463662	2R_13463662_SNP [dm3] 2R_17576157_SNP [dm6]	C	T	4.608e^-5	1	SYNONYMOUS_CODING Dcr-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7782113	X_7782113_SNP [dm3] X_7888080_SNP [dm6]	A	G	4.873e^-5	1	SYNONYMOUS_CODING CG10932 DOWNSTREAM Nek2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12522225	2R_12522225_SNP [dm3] 2R_16634720_SNP [dm6]	T	C	4.933e^-5	1	UTR_5_PRIME Alk	TF binding site BDTNP1_TFBS_twi
3R	9079064	3R_9079064_SNP [dm3] 3R_13253342_SNP [dm6]	T	A	4.978e^-5	1	INTRON Ace
X	13127313	X_13127313_SNP [dm3] X_13233280_SNP [dm6]	G	A	5.112e^-5	1	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14119912	2R_14119912_SNP [dm3] 2R_18232407_SNP [dm6]	T	A	5.113e^-5	1	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14119917	2R_14119917_SNP [dm3] 2R_18232412_SNP [dm6]	A	T	5.113e^-5	1	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	21858207	2L_21858207_SNP [dm3] 2L_21858207_SNP [dm6]	T	G	5.181e^-5	1	INTRON CR44917	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16833746	3R_16833746_SNP [dm3] 3R_21008024_SNP [dm6]	A	T	5.240e^-5	1	INTRON Calx	TF binding site mE1_TFBS_sbb
3R	25555296	3R_25555296_SNP [dm3] 3R_29729574_SNP [dm6]	A	G	5.455e^-5	1	INTRON Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	919722	3L_919722_SNP [dm3] 3L_919722_SNP [dm6]	T	C	5.466e^-5	1	INTRON Glut1
3R	17487973	3R_17487973_SNP [dm3] 3R_21662251_SNP [dm6]	G	A	5.508e^-5	1	INTRON CG6353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8314568	3L_8314568_SNP [dm3] 3L_8321468_SNP [dm6]	A	G	5.748e^-5	1	INTRON CG13670	TF binding site mE1_TFBS_cad
X	13221413	X_13221413_SNP [dm3] X_13327380_SNP [dm6]	T	C	5.923e^-5	1	SYNONYMOUS_CODING IP3K2
3R	21337061	3R_21337061_SNP [dm3] 3R_25511339_SNP [dm6]	A	T	6.030e^-5	1	INTERGENIC
2R	15385102	2R_15385102_SNP [dm3] 2R_19497597_SNP [dm6]	A	C	6.090e^-5	1	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6922819	3R_6922819_SNP [dm3] 3R_11097097_SNP [dm6]	C	T	6.210e^-5	1	INTERGENIC
2L	11285467	2L_11285467_SNP [dm3] 2L_11285467_SNP [dm6]	C	T	6.237e^-5	1	NON_SYNONYMOUS_CODING Osi21	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3202119	X_3202119_SNP [dm3] X_3308086_SNP [dm6]	T	G	6.281e^-5	1	INTRON dnc
3R	1734185	3R_1734185_SNP [dm3] 3R_5908463_SNP [dm6]	T	G	6.291e^-5	1	INTRON CG34113
2L	16203092	2L_16203092_SNP [dm3] 2L_16203092_SNP [dm6]	G	A	6.335e^-5	1	UPSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16706129	X_16706129_SNP [dm3] X_16812096_SNP [dm6]	A	G	6.339e^-5	1	INTRON CG4829
2L	14915711	2L_14915711_SNP [dm3] 2L_14915711_SNP [dm6]	A	T	6.383e^-5	1	INTRON CG42313
2L	14915710	2L_14915710_SNP [dm3] 2L_14915710_SNP [dm6]	T	A	6.470e^-5	1	INTRON CG42313
2L	12157195	2L_12157195_SNP [dm3] 2L_12157195_SNP [dm6]	C	A	6.602e^-5	1	INTRON CG31760
2R	11683054	2R_11683054_SNP [dm3] 2R_15795549_SNP [dm6]	C	T	6.609e^-5	1	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18140632	3L_18140632_SNP [dm3] 3L_18147532_SNP [dm6]	T	C	6.968e^-5	1	INTERGENIC
3L	17365005	3L_17365005_SNP [dm3] 3L_17371905_SNP [dm6]	C	T	7.027e^-5	1	SYNONYMOUS_CODING Cad74A
2L	12529413	2L_12529413_SNP [dm3] 2L_12529413_SNP [dm6]	G	A	7.235e^-5	1	INTRON bun	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	9114077	3R_9114077_SNP [dm3] 3R_13288355_SNP [dm6]	T	G	7.358e^-5	1	INTRON CG15887	TF binding site mE1_TFBS_inv
X	21174508	X_21174508_SNP [dm3] X_21303481_SNP [dm6]	G	A	7.394e^-5	1	UPSTREAM CG1718 DOWNSTREAM tRNA:CR32520 INTRON CG1718
3R	7187867	3R_7187867_SNP [dm3] 3R_11362145_SNP [dm6]	G	A	7.403e^-5	1	INTRON pros	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13604736	3R_13604736_SNP [dm3] 3R_17779014_SNP [dm6]	G	A	7.457e^-5	1	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
2L	3154711	2L_3154711_SNP [dm3] 2L_3154711_SNP [dm6]	C	T	7.476e^-5	1	INTRON Mad
2R	2997006	2R_2997006_DEL [dm3] 2R_7109501_DEL [dm6]	CTCTCGAGCCAT...	C	7.507e^-5	1	INTRON esn	TF binding site mE1_TFBS_sens
X	16902696	X_16902696_INS [dm3] X_17008663_INS [dm6]	C	CTC	7.563e^-5	1	INTRON CG45002
X	9108204	X_9108204_SNP [dm3] X_9214171_SNP [dm6]	C	T	7.668e^-5	1	UPSTREAM Obp8a INTERGENIC
3R	9082026	3R_9082026_INS [dm3] 3R_13256304_INS [dm6]	A	ATGT	7.705e^-5	1	INTRON Ace
2R	17547467	2R_17547467_SNP [dm3] 2R_21659962_SNP [dm6]	G	A	7.838e^-5	1	UTR_5_PRIME Rae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	21174607	X_21174607_SNP [dm3] X_21303580_SNP [dm6]	G	A	7.875e^-5	1	UPSTREAM CG1718 DOWNSTREAM tRNA:CR32520 INTRON CG1718
3R	13105895	3R_13105895_SNP [dm3] 3R_17280173_SNP [dm6]	C	T	7.957e^-5	1	INTERGENIC
2R	13494014	2R_13494014_SNP [dm3] 2R_17606509_SNP [dm6]	A	G	7.974e^-5	1	INTRON CG10936
3R	17487997	3R_17487997_MNP [dm3] 3R_21662275_MNP [dm6]	GTC	TAT	8.072e^-5	1	INTRON CG6353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9080598	3R_9080598_SNP [dm3] 3R_13254876_SNP [dm6]	T	C	8.155e^-5	1	INTRON Ace
3R	26017888	3R_26017888_SNP [dm3] 3R_30192166_SNP [dm6]	T	G	8.188e^-5	1	UPSTREAM CG9747 INTERGENIC
2L	14344300	2L_14344300_SNP [dm3] 2L_14344300_SNP [dm6]	A	C	8.242e^-5	1	NON_SYNONYMOUS_CODING CG33090
X	10493611	X_10493611_SNP [dm3] X_10599578_SNP [dm6]	A	C	8.314e^-5	1	DOWNSTREAM CG2124 INTRON CG1628	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9047291	3R_9047291_SNP [dm3] 3R_13221569_SNP [dm6]	A	T	8.325e^-5	1	UPSTREAM CG8476 INTERGENIC
3R	13102987	3R_13102987_SNP [dm3] 3R_17277265_SNP [dm6]	G	A	8.384e^-5	1	INTERGENIC
3L	5314364	3L_5314364_SNP [dm3] 3L_5321264_SNP [dm6]	G	A	8.422e^-5	1	INTERGENIC
2R	7513010	2R_7513010_SNP [dm3] 2R_11625505_SNP [dm6]	A	G	8.542e^-5	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	9080608	3R_9080608_SNP [dm3] 3R_13254886_SNP [dm6]	A	C	8.613e^-5	1	INTRON Ace
X	8311134	X_8311134_DEL [dm3] X_8417101_DEL [dm6]	AT	A	8.686e^-5	1	INTRON Trf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13127264	X_13127264_SNP [dm3] X_13233231_SNP [dm6]	G	A	8.688e^-5	1	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11683071	2R_11683071_SNP [dm3] 2R_15795566_SNP [dm6]	T	G	8.827e^-5	1	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16833788	3R_16833788_SNP [dm3] 3R_21008066_SNP [dm6]	G	A	8.903e^-5	1	INTRON Calx	TF binding site mE1_TFBS_sbb
3R	13103028	3R_13103028_SNP [dm3] 3R_17277306_SNP [dm6]	A	G	8.920e^-5	1	INTERGENIC
2L	2266078	2L_2266078_SNP [dm3] 2L_2266078_SNP [dm6]	A	T	9.018e^-5	1	UPSTREAM CG34049 INTERGENIC
2L	12982173	2L_12982173_SNP [dm3] 2L_12982173_SNP [dm6]	G	T	9.032e^-5	1	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16237590	2L_16237590_SNP [dm3] 2L_16237590_SNP [dm6]	G	T	9.044e^-5	1	SYNONYMOUS_CODING CG42817
2R	14094903	2R_14094903_SNP [dm3] 2R_18207398_SNP [dm6]	C	T	9.096e^-5	1	UPSTREAM CG30114 INTERGENIC
3R	9126558	3R_9126558_SNP [dm3] 3R_13300836_SNP [dm6]	G	A	9.150e^-5	1	SYNONYMOUS_CODING CG8774	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21174509	X_21174509_SNP [dm3] X_21303482_SNP [dm6]	A	G	9.164e^-5	1	UPSTREAM CG1718 DOWNSTREAM tRNA:CR32520 INTRON CG1718
3R	6921095	3R_6921095_SNP [dm3] 3R_11095373_SNP [dm6]	G	A	9.176e^-5	1	INTERGENIC
2L	12025631	2L_12025631_SNP [dm3] 2L_12025631_SNP [dm6]	G	C	9.197e^-5	1	UPSTREAM CR44587 INTERGENIC
2L	16520350	2L_16520350_SNP [dm3] 2L_16520350_SNP [dm6]	T	C	9.284e^-5	1	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	14915693	2L_14915693_INS [dm3] 2L_14915693_INS [dm6]	A	AT	9.304e^-5	1	INTRON CG42313
X	7781717	X_7781717_SNP [dm3] X_7887684_SNP [dm6]	G	A	9.350e^-5	1	SYNONYMOUS_CODING CG10932 DOWNSTREAM Ir7g	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3R	964238	3R_964238_SNP [dm3] 3R_5138516_SNP [dm6]	T	G	9.538e^-5	1	UTR_5_PRIME CG12589 UPSTREAM CG12589	TF binding site mE1_TFBS_cad
3L	9701278	3L_9701278_SNP [dm3] 3L_9708178_SNP [dm6]	T	C	9.627e^-5	1	SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	794501	2L_794501_SNP [dm3] 2L_794501_SNP [dm6]	A	C	9.653e^-5	1	INTERGENIC
3L	4393022	3L_4393022_SNP [dm3] 3L_4393022_SNP [dm6]	A	G	9.693e^-5	1	INTRON slow
3L	4393026	3L_4393026_SNP [dm3] 3L_4393026_SNP [dm6]	A	C	9.693e^-5	1	INTRON slow
2L	7159879	2L_7159879_SNP [dm3] 2L_7159879_SNP [dm6]	A	C	9.755e^-5	1	INTERGENIC
3R	9080580	3R_9080580_SNP [dm3] 3R_13254858_SNP [dm6]	G	T	9.755e^-5	1	INTRON Ace
3L	10935880	3L_10935880_SNP [dm3] 3L_10942780_SNP [dm6]	A	C	9.784e^-5	1	INTERGENIC
2L	12982222	2L_12982222_SNP [dm3] 2L_12982222_SNP [dm6]	G	T	9.810e^-5	1	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4465233	2R_4465233_SNP [dm3] 2R_8577728_SNP [dm6]	T	C	9.921e^-5	1	INTRON CG42326
2L	15645780	2L_15645780_SNP [dm3] 2L_15645780_SNP [dm6]	T	C	1.011e^-4	1	UTR_3_PRIME CG4587 DOWNSTREAM CG4587
2R	17308201	2R_17308201_SNP [dm3] 2R_21420696_SNP [dm6]	C	A	1.013e^-4	1	INTRON Sdc
3R	9079042	3R_9079042_SNP [dm3] 3R_13253320_SNP [dm6]	A	G	1.014e^-4	1	INTRON Ace
3L	10935902	3L_10935902_SNP [dm3] 3L_10942802_SNP [dm6]	C	T	1.022e^-4	1	INTERGENIC
3L	4393049	3L_4393049_SNP [dm3] 3L_4393049_SNP [dm6]	G	T	1.030e^-4	1	INTRON slow
3L	7232235	3L_7232235_SNP [dm3] 3L_7239135_SNP [dm6]	C	A	1.039e^-4	1	SYNONYMOUS_CODING BHD	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	7702452	X_7702452_SNP [dm3] X_7808419_SNP [dm6]	T	G	1.050e^-4	1	INTERGENIC
2R	10838069	2R_10838069_SNP [dm3] 2R_14950564_SNP [dm6]	T	C	1.059e^-4	1	UPSTREAM aPKC INTRON aPKC
3L	18547998	3L_18547998_SNP [dm3] 3L_18554898_SNP [dm6]	T	C	1.064e^-4	1	INTERGENIC
X	690362	X_690362_INS [dm3] X_796329_INS [dm6]	A	AA	1.068e^-4	1	UTR_3_PRIME CG16989 DOWNSTREAM Rbf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
3L	18887075	3L_18887075_SNP [dm3] 3L_18893975_SNP [dm6]	A	G	1.071e^-4	1	DOWNSTREAM NijB INTRON CG3902	TF binding site mE1_TFBS_cad
2R	12498356	2R_12498356_SNP [dm3] 2R_16610851_SNP [dm6]	A	G	1.079e^-4	1	INTRON CG5065
3R	8745122	3R_8745122_SNP [dm3] 3R_12919400_SNP [dm6]	A	G	1.098e^-4	1	INTRON beat-Vb
3R	9131882	3R_9131882_SNP [dm3] 3R_13306160_SNP [dm6]	A	T	1.098e^-4	1	INTRON CG32473
2R	14875990	2R_14875990_SNP [dm3] 2R_18988485_SNP [dm6]	G	T	1.102e^-4	1	INTRON tn
3L	4393043	3L_4393043_SNP [dm3] 3L_4393043_SNP [dm6]	T	G	1.104e^-4	1	INTRON slow
2L	22062328	2L_22062328_DEL [dm3] 2L_22062328_DEL [dm6]	CA	C	1.105e^-4	1	INTERGENIC
3L	18888116	3L_18888116_SNP [dm3] 3L_18895016_SNP [dm6]	G	A	1.110e^-4	1	INTRON CG3902
3R	26537274	3R_26537274_SNP [dm3] 3R_30711552_SNP [dm6]	C	T	1.120e^-4	1	INTERGENIC
2L	14915632	2L_14915632_INS [dm3] 2L_14915632_INS [dm6]	T	TCAAAACACAGGCAAGTCCT...	1.139e^-4	1	INTRON CG42313
3L	961269	3L_961269_SNP [dm3] 3L_961269_SNP [dm6]	C	G	1.143e^-4	1	INTRON Glut1
3L	16649801	3L_16649801_SNP [dm3] 3L_16656701_SNP [dm6]	C	T	1.151e^-4	1	INTRON Baldspot
3R	9081769	3R_9081769_SNP [dm3] 3R_13256047_SNP [dm6]	T	C	1.168e^-4	1	INTRON Ace
X	15817876	X_15817876_SNP [dm3] X_15923843_SNP [dm6]	G	C	1.177e^-4	1	SYNONYMOUS_CODING CG8916	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9081750	3R_9081750_SNP [dm3] 3R_13256028_SNP [dm6]	C	A	1.179e^-4	1	INTRON Ace
2L	16214398	2L_16214398_SNP [dm3] 2L_16214398_SNP [dm6]	A	G	1.182e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14276694	2R_14276694_SNP [dm3] 2R_18389189_SNP [dm6]	T	A	1.189e^-4	1	UPSTREAM CG15065 DOWNSTREAM IM3 INTRON CG16836	TF binding site BDTNP1_TFBS_dl
2R	19535380	2R_19535380_SNP [dm3] 2R_23647857_SNP [dm6]	A	C	1.194e^-4	1	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	25566171	3R_25566171_SNP [dm3] 3R_29740449_SNP [dm6]	A	T	1.198e^-4	1	INTRON CG1969	TF binding site BDTNP1_TFBS_dl
2R	6890598	2R_6890598_SNP [dm3] 2R_11003093_SNP [dm6]	A	G	1.200e^-4	1	INTRON luna
2L	12101454	2L_12101454_SNP [dm3] 2L_12101454_SNP [dm6]	G	T	1.206e^-4	1	DOWNSTREAM Ced-12 INTRON Patsas
3R	9130129	3R_9130129_SNP [dm3] 3R_13304407_SNP [dm6]	C	T	1.217e^-4	1	SYNONYMOUS_CODING CG32473 UPSTREAM CG32473 DOWNSTREAM CG43208
3R	26547128	3R_26547128_SNP [dm3] 3R_30721406_SNP [dm6]	A	G	1.239e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	918935	3R_918935_SNP [dm3] 3R_5093213_SNP [dm6]	T	A	1.243e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7085416	3L_7085416_SNP [dm3] 3L_7092316_SNP [dm6]	C	A	1.244e^-4	1	UPSTREAM Cpr65Ec INTERGENIC
2R	2874740	2R_2874740_SNP [dm3] 2R_6987235_SNP [dm6]	T	A	1.253e^-4	1	INTRON CG17002	TF binding site mE1_TFBS_cad
2L	2266061	2L_2266061_SNP [dm3] 2L_2266061_SNP [dm6]	G	A	1.256e^-4	1	UPSTREAM CG34049 INTERGENIC
3L	15212746	3L_15212746_SNP [dm3] 3L_15219646_SNP [dm6]	G	A	1.264e^-4	1	INTERGENIC
3R	7229494	3R_7229494_SNP [dm3] 3R_11403772_SNP [dm6]	T	C	1.291e^-4	1	UTR_3_PRIME pros
2L	9276515	2L_9276515_SNP [dm3] 2L_9276515_SNP [dm6]	A	T	1.305e^-4	1	INTRON Ggamma30A
3L	22138983	3L_22138983_SNP [dm3] 3L_22145883_SNP [dm6]	A	C	1.320e^-4	1	INTRON olf413
3L	7452459	3L_7452459_SNP [dm3] 3L_7459359_SNP [dm6]	C	T	1.324e^-4	1	DOWNSTREAM ppk26 INTERGENIC
3L	18889864	3L_18889864_SNP [dm3] 3L_18896764_SNP [dm6]	G	C	1.325e^-4	1	UPSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7512895	2R_7512895_SNP [dm3] 2R_11625390_SNP [dm6]	G	T	1.325e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7512877	2R_7512877_SNP [dm3] 2R_11625372_SNP [dm6]	T	G	1.343e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14279574	2L_14279574_SNP [dm3] 2L_14279574_SNP [dm6]	G	T	1.345e^-4	1	INTRON wb
2L	16520352	2L_16520352_DEL [dm3] 2L_16520352_DEL [dm6]	TAAGCAAAGTC...	T	1.364e^-4	1	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	19022474	2R_19022474_SNP [dm3] 2R_23134951_SNP [dm6]	T	C	1.366e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6284522	3L_6284522_DEL [dm3] 3L_6291422_DEL [dm6]	CA	T	1.369e^-4	1	INTERGENIC
X	9898801	X_9898801_SNP [dm3] X_10004768_SNP [dm6]	A	G	1.373e^-4	1	INTRON CG32694
2R	8399090	2R_8399090_SNP [dm3] 2R_12511585_SNP [dm6]	T	A	1.375e^-4	1	UTR_3_PRIME achi UPSTREAM vis
2R	13493700	2R_13493700_SNP [dm3] 2R_17606195_SNP [dm6]	T	C	1.376e^-4	1	NON_SYNONYMOUS_CODING CG10936
3R	26547096	3R_26547096_SNP [dm3] 3R_30721374_SNP [dm6]	C	A	1.379e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26547098	3R_26547098_SNP [dm3] 3R_30721376_SNP [dm6]	G	A	1.379e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17547345	2R_17547345_SNP [dm3] 2R_21659840_SNP [dm6]	G	T	1.380e^-4	1	SYNONYMOUS_CODING Rae1	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	15860890	3L_15860890_SNP [dm3] 3L_15867790_SNP [dm6]	A	T	1.381e^-4	1	INTRON pHCl
X	21174494	X_21174494_SNP [dm3] X_21303467_SNP [dm6]	C	T	1.386e^-4	1	UPSTREAM CG1718 DOWNSTREAM tRNA:CR32520 INTRON CG1718
2R	19345595	2R_19345595_SNP [dm3] 2R_23458072_SNP [dm6]	A	C	1.387e^-4	1	UTR_3_PRIME skpF INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12341038	3L_12341038_SNP [dm3] 3L_12347938_SNP [dm6]	A	G	1.394e^-4	1	SYNONYMOUS_CODING CrzR
2R	7513006	2R_7513006_SNP [dm3] 2R_11625501_SNP [dm6]	C	T	1.395e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	7512927	2R_7512927_SNP [dm3] 2R_11625422_SNP [dm6]	T	G	1.397e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3051093	X_3051093_SNP [dm3] X_3157060_SNP [dm6]	T	G	1.404e^-4	1	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2R	13633761	2R_13633761_SNP [dm3] 2R_17746256_SNP [dm6]	A	T	1.411e^-4	1	SYNONYMOUS_CODING sub DOWNSTREAM Ir54a
2L	2266083	2L_2266083_SNP [dm3] 2L_2266083_SNP [dm6]	A	G	1.422e^-4	1	UPSTREAM CG34049 INTERGENIC
3R	25555145	3R_25555145_SNP [dm3] 3R_29729423_SNP [dm6]	T	G	1.424e^-4	1	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	17259948	X_17259948_SNP [dm3] X_17365915_SNP [dm6]	C	G	1.426e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	7781624	X_7781624_SNP [dm3] X_7887591_SNP [dm6]	A	G	1.440e^-4	1	SYNONYMOUS_CODING CG10932 DOWNSTREAM Ir7g	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	14156182	2R_14156182_SNP [dm3] 2R_18268677_SNP [dm6]	T	C	1.457e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10097421	2R_10097421_SNP [dm3] 2R_14209916_SNP [dm6]	A	T	1.487e^-4	1	INTRON Sox15	regulatory region REDfly_CRMs
3R	916834	3R_916834_SNP [dm3] 3R_5091112_SNP [dm6]	A	C	1.491e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	2176706	X_2176706_DEL [dm3] X_2282673_DEL [dm6]	CTATCGACGCCACAGAGACC...	C	1.495e^-4	1	INTRON CG2865	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17990632	2R_17990632_SNP [dm3] 2R_22103127_SNP [dm6]	T	A	1.499e^-4	1	UPSTREAM CG6613 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9129312	3R_9129312_SNP [dm3] 3R_13303590_SNP [dm6]	T	C	1.503e^-4	1	NON_SYNONYMOUS_CODING CG43208 INTRON CG32473
3R	916821	3R_916821_DEL [dm3] 3R_5091099_DEL [dm6]	AAAAC	A	1.516e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	916827	3R_916827_MNP [dm3] 3R_5091105_MNP [dm6]	TTT	GCA	1.516e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	25319319	3R_25319319_SNP [dm3] 3R_29493597_SNP [dm6]	C	A	1.526e^-4	1	UPSTREAM Diedel & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
2R	7512935	2R_7512935_SNP [dm3] 2R_11625430_SNP [dm6]	T	A	1.537e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	4393037	3L_4393037_SNP [dm3] 3L_4393037_SNP [dm6]	A	T	1.541e^-4	1	INTRON slow
2L	1325310	2L_1325310_SNP [dm3] 2L_1325310_SNP [dm6]	C	T	1.543e^-4	1	INTERGENIC
2L	15649633	2L_15649633_SNP [dm3] 2L_15649633_SNP [dm6]	T	A	1.545e^-4	1	INTRON CG4587
3R	11089295	3R_11089295_SNP [dm3] 3R_15263573_SNP [dm6]	C	T	1.547e^-4	1	START_GAINED Set UTR_5_PRIME Set UPSTREAM eIF-2gamma & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	10141652	2R_10141652_SNP [dm3] 2R_14254147_SNP [dm6]	A	G	1.548e^-4	1	SYNONYMOUS_CODING Hsc70-5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7966945	2L_7966945_SNP [dm3] 2L_7966945_SNP [dm6]	C	T	1.551e^-4	1	INTRON Snoo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9548540	3L_9548540_SNP [dm3] 3L_9555440_SNP [dm6]	G	A	1.556e^-4	1	INTRON CG42673
2L	18877673	2L_18877673_DEL [dm3] 2L_18877673_DEL [dm6]	CCA	C	1.572e^-4	1	INTRON tup	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	7512905	2R_7512905_SNP [dm3] 2R_11625400_SNP [dm6]	T	G	1.578e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6810649	2L_6810649_SNP [dm3] 2L_6810649_SNP [dm6]	C	T	1.581e^-4	1	INTERGENIC
2R	14400955	2R_14400955_SNP [dm3] 2R_18513450_SNP [dm6]	C	T	1.584e^-4	1	INTERGENIC
X	15138098	X_15138098_INS [dm3] X_15244065_INS [dm6]	G	GTTCCTCCAG	1.585e^-4	1	CODON_INSERTION PPYR1	TF binding site mE1_TFBS_HSA
2R	14217512	2R_14217512_SNP [dm3] 2R_18330007_SNP [dm6]	C	T	1.590e^-4	1	INTRON sbb
3L	3094642	3L_3094642_SNP [dm3] 3L_3094642_SNP [dm6]	T	A	1.596e^-4	1	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad
2R	7512910	2R_7512910_SNP [dm3] 2R_11625405_SNP [dm6]	G	T	1.601e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13885772	2R_13885772_SNP [dm3] 2R_17998267_SNP [dm6]	C	T	1.602e^-4	1	INTRON dpr13
3L	815421	3L_815421_SNP [dm3] 3L_815421_SNP [dm6]	C	G	1.610e^-4	1	DOWNSTREAM CR44537 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	916838	3R_916838_SNP [dm3] 3R_5091116_SNP [dm6]	T	G	1.617e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	25566980	3R_25566980_SNP [dm3] 3R_29741258_SNP [dm6]	C	T	1.621e^-4	1	SYNONYMOUS_CODING CG1969 DOWNSTREAM CG7609
3L	5071923	3L_5071923_SNP [dm3] 3L_5071923_SNP [dm6]	G	T	1.629e^-4	1	INTRON Con
3L	1386379	3L_1386379_SNP [dm3] 3L_1386379_SNP [dm6]	A	T	1.649e^-4	1	SYNONYMOUS_CODING ru INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	25572466	3R_25572466_SNP [dm3] 3R_29746744_SNP [dm6]	A	G	1.652e^-4	1	SPLICE_SITE_REGION IntS11 DOWNSTREAM ATPsyn-gamma INTRON IntS11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18480276	3L_18480276_SNP [dm3] 3L_18487176_SNP [dm6]	G	A	1.662e^-4	1	SYNONYMOUS_CODING AstC-R2
3L	9701248	3L_9701248_SNP [dm3] 3L_9708148_SNP [dm6]	T	C	1.666e^-4	1	SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3159527	3R_3159527_SNP [dm3] 3R_7333805_SNP [dm6]	C	T	1.673e^-4	1	INTERGENIC
3L	919591	3L_919591_DEL [dm3] 3L_919591_DEL [dm6]	CGT	C	1.676e^-4	1	INTRON Glut1
2R	2874592	2R_2874592_SNP [dm3] 2R_6987087_SNP [dm6]	T	C	1.678e^-4	1	INTRON CG17002	TF binding site mE1_TFBS_cad
2L	16214575	2L_16214575_SNP [dm3] 2L_16214575_SNP [dm6]	A	C	1.682e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8044318	X_8044318_SNP [dm3] X_8150285_SNP [dm6]	T	C	1.691e^-4	1	SYNONYMOUS_CODING CG10959 DOWNSTREAM Gbeta5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4872011	2L_4872011_SNP [dm3] 2L_4872011_SNP [dm6]	T	C	1.697e^-4	1	SYNONYMOUS_CODING pog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	16912819	2L_16912819_SNP [dm3] 2L_16912819_SNP [dm6]	G	A	1.701e^-4	1	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_sens
2L	2516630	2L_2516630_SNP [dm3] 2L_2516630_SNP [dm6]	C	T	1.722e^-4	1	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22294793	3R_22294793_SNP [dm3] 3R_26469071_SNP [dm6]	A	G	1.722e^-4	1	INTRON CG5455
3L	4392549	3L_4392549_SNP [dm3] 3L_4392549_SNP [dm6]	A	T	1.723e^-4	1	INTRON slow
3L	2426868	3L_2426868_SNP [dm3] 3L_2426868_SNP [dm6]	A	G	1.728e^-4	1	INTRON CG45186
3R	859720	3R_859720_DEL [dm3] 3R_5033998_DEL [dm6]	AA	A	1.735e^-4	1	INTERGENIC
3L	5071979	3L_5071979_SNP [dm3] 3L_5071979_SNP [dm6]	T	A	1.737e^-4	1	INTRON Con
2L	15551407	2L_15551407_SNP [dm3] 2L_15551407_SNP [dm6]	C	T	1.746e^-4	1	UTR_3_PRIME CG15256 DOWNSTREAM CG15256
3L	10935936	3L_10935936_SNP [dm3] 3L_10942836_SNP [dm6]	G	A	1.766e^-4	1	INTERGENIC
2L	6177408	2L_6177408_SNP [dm3] 2L_6177408_SNP [dm6]	T	C	1.771e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12674580	2R_12674580_SNP [dm3] 2R_16787075_SNP [dm6]	G	A	1.776e^-4	1	UPSTREAM CG5522 INTRON CG5522
2R	2997557	2R_2997557_SNP [dm3] 2R_7110052_SNP [dm6]	G	A	1.781e^-4	1	INTRON esn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3491606	X_3491606_SNP [dm3] X_3597573_SNP [dm6]	C	A	1.798e^-4	1	INTRON AstA-R1
3R	8739035	3R_8739035_SNP [dm3] 3R_12913313_SNP [dm6]	T	G	1.809e^-4	1	INTERGENIC
3R	2987394	3R_2987394_SNP [dm3] 3R_7161672_SNP [dm6]	A	G	1.810e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14881039	3R_14881039_DEL [dm3] 3R_19055317_DEL [dm6]	TCGTGTTT	T	1.810e^-4	1	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	4393038	3L_4393038_SNP [dm3] 3L_4393038_SNP [dm6]	G	C	1.812e^-4	1	INTRON slow
2R	4523948	2R_4523948_SNP [dm3] 2R_8636443_SNP [dm6]	C	T	1.817e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	13633716	2R_13633716_SNP [dm3] 2R_17746211_SNP [dm6]	T	C	1.822e^-4	1	SYNONYMOUS_CODING sub DOWNSTREAM Ir54a
3R	9145063	3R_9145063_SNP [dm3] 3R_13319341_SNP [dm6]	T	A	1.829e^-4	1	UPSTREAM CG45080 INTERGENIC
3R	7226782	3R_7226782_SNP [dm3] 3R_11401060_SNP [dm6]	T	C	1.835e^-4	1	UTR_3_PRIME pros
2L	17027741	2L_17027741_SNP [dm3] 2L_17027741_SNP [dm6]	A	G	1.840e^-4	1	INTERGENIC
X	16874742	X_16874742_SNP [dm3] X_16980709_SNP [dm6]	T	C	1.848e^-4	1	INTRON CG45002
3R	9108610	3R_9108610_SNP [dm3] 3R_13282888_SNP [dm6]	C	T	1.859e^-4	1	SYNONYMOUS_CODING CG8630	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21162534	X_21162534_SNP [dm3] X_21291507_SNP [dm6]	G	T	1.862e^-4	1	SYNONYMOUS_CODING CG1494 DOWNSTREAM CG1718	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3790314	X_3790314_SNP [dm3] X_3896281_SNP [dm6]	G	A	1.866e^-4	1	SYNONYMOUS_CODING CG42541	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17036902	2L_17036902_SNP [dm3] 2L_17036902_SNP [dm6]	T	C	1.873e^-4	1	INTERGENIC
2R	7512929	2R_7512929_SNP [dm3] 2R_11625424_SNP [dm6]	G	T	1.876e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7781305	X_7781305_SNP [dm3] X_7887272_SNP [dm6]	G	C	1.876e^-4	1	UTR_3_PRIME CG10932 DOWNSTREAM Ir7g	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	17547536	2R_17547536_SNP [dm3] 2R_21660031_SNP [dm6]	A	G	1.882e^-4	1	UPSTREAM Rae1 DOWNSTREAM pirk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14648627	3L_14648627_SNP [dm3] 3L_14655527_SNP [dm6]	T	C	1.886e^-4	1	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12529687	2L_12529687_SNP [dm3] 2L_12529687_SNP [dm6]	C	T	1.890e^-4	1	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12716333	3L_12716333_MNP [dm3] 3L_12723233_MNP [dm6]	CTG	AAT	1.902e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11420013	2L_11420013_SNP [dm3] 2L_11420013_SNP [dm6]	C	T	1.902e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
2R	4754928	2R_4754928_SNP [dm3] 2R_8867423_SNP [dm6]	C	T	1.903e^-4	1	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9082022	3R_9082022_SNP [dm3] 3R_13256300_SNP [dm6]	T	A	1.911e^-4	1	INTRON Ace
X	12836579	X_12836579_SNP [dm3] X_12942546_SNP [dm6]	A	C	1.919e^-4	1	UTR_5_PRIME fne
2R	17990624	2R_17990624_SNP [dm3] 2R_22103119_SNP [dm6]	T	A	1.920e^-4	1	UPSTREAM CG6613 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14902045	2R_14902045_SNP [dm3] 2R_19014540_SNP [dm6]	A	G	1.922e^-4	1	INTERGENIC
2L	988529	2L_988529_SNP [dm3] 2L_988529_SNP [dm6]	C	T	1.926e^-4	1	EXON CR44801	TF binding site mE1_TFBS_chinmo
X	8320990	X_8320990_SNP [dm3] X_8426957_SNP [dm6]	A	G	1.934e^-4	1	SYNONYMOUS_CODING Trf2 UTR_5_PRIME Trf2	TF binding site mE1_TFBS_cad
3R	23907395	3R_23907395_SNP [dm3] 3R_28081673_SNP [dm6]	T	G	1.940e^-4	1	INTRON CG34362
3R	26537731	3R_26537731_SNP [dm3] 3R_30712009_SNP [dm6]	T	A	1.943e^-4	1	INTERGENIC
2R	7513002	2R_7513002_SNP [dm3] 2R_11625497_SNP [dm6]	A	G	1.946e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	12341069	3L_12341069_SNP [dm3] 3L_12347969_SNP [dm6]	T	G	1.947e^-4	1	UTR_5_PRIME CrzR
X	16751579	X_16751579_SNP [dm3] X_16857546_SNP [dm6]	T	C	1.955e^-4	1	UTR_5_PRIME CG13003
3R	14880552	3R_14880552_INS [dm3] 3R_19054830_INS [dm6]	A	AA	1.956e^-4	1	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9136708	3R_9136708_SNP [dm3] 3R_13310986_SNP [dm6]	G	T	1.957e^-4	1	SYNONYMOUS_CODING CG32473
3R	14881380	3R_14881380_SNP [dm3] 3R_19055658_SNP [dm6]	C	T	1.960e^-4	1	INTRON cdi	TF binding site BDTNP1_TFBS_twi
3R	15677323	3R_15677323_DEL [dm3] 3R_19851601_DEL [dm6]	TT	T	1.961e^-4	1	INTRON CG4662	TF binding site mE1_TFBS_cad
3R	7235728	3R_7235728_SNP [dm3] 3R_11410006_SNP [dm6]	T	G	1.963e^-4	1	UPSTREAM Irbp & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
2L	12725277	2L_12725277_SNP [dm3] 2L_12725277_SNP [dm6]	C	T	1.965e^-4	1	INTRON MRP
2R	7512818	2R_7512818_SNP [dm3] 2R_11625313_SNP [dm6]	A	G	1.966e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13541083	2R_13541083_DEL [dm3] 2R_17653578_DEL [dm6]	TGTT	T	1.979e^-4	1	INTRON CCHa1-R
2L	15370367	2L_15370367_SNP [dm3] 2L_15370367_SNP [dm6]	G	A	1.983e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5021121	2L_5021121_SNP [dm3] 2L_5021121_SNP [dm6]	T	A	1.990e^-4	1	INTRON vkg
3R	3282931	3R_3282931_INS [dm3] 3R_7457209_INS [dm6]	T	TCAGT	1.997e^-4	1	INTERGENIC
3R	25562651	3R_25562651_SNP [dm3] 3R_29736929_SNP [dm6]	T	A	1.997e^-4	1	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	7512904	2R_7512904_SNP [dm3] 2R_11625399_SNP [dm6]	C	A	1.998e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9127839	3R_9127839_SNP [dm3] 3R_13302117_SNP [dm6]	G	A	1.999e^-4	1	SYNONYMOUS_CODING CG8774 UPSTREAM CG32473
3R	916840	3R_916840_DEL [dm3] 3R_5091118_DEL [dm6]	GC	A	2.001e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	7512932	2R_7512932_SNP [dm3] 2R_11625427_SNP [dm6]	T	C	2.007e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12982234	2L_12982234_SNP [dm3] 2L_12982234_SNP [dm6]	C	A	2.009e^-4	1	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18311641	3L_18311641_SNP [dm3] 3L_18318541_SNP [dm6]	G	A	2.011e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6520643	X_6520643_SNP [dm3] X_6626610_SNP [dm6]	C	G	2.014e^-4	1	INTRON pigs
2L	1236288	2L_1236288_INS [dm3] 2L_1236288_INS [dm6]	C	CGAACC	2.015e^-4	1	INTERGENIC
3L	815402	3L_815402_SNP [dm3] 3L_815402_SNP [dm6]	A	G	2.018e^-4	1	DOWNSTREAM CR44537 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	6720070	2R_6720070_SNP [dm3] 2R_10832565_SNP [dm6]	T	A	2.018e^-4	1	INTRON CG12344
3R	9115765	3R_9115765_SNP [dm3] 3R_13290043_SNP [dm6]	T	A	2.023e^-4	1	UPSTREAM Osi22 INTERGENIC
2R	19124340	2R_19124340_DEL [dm3] 2R_23236817_DEL [dm6]	GTCGGAG	G	2.030e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	915232	3R_915232_SNP [dm3] 3R_5089510_SNP [dm6]	T	C	2.049e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7322418	2R_7322418_SNP [dm3] 2R_11434913_SNP [dm6]	T	C	2.052e^-4	1	INTERGENIC
3L	10757781	3L_10757781_SNP [dm3] 3L_10764681_SNP [dm6]	T	A	2.053e^-4	1	INTERGENIC
3R	7236741	3R_7236741_SNP [dm3] 3R_11411019_SNP [dm6]	T	C	2.054e^-4	1	DOWNSTREAM snoRNA:Irbp-a INTRON Irbp	TF binding site mE1_TFBS_chinmo
X	2336021	X_2336021_SNP [dm3] X_2441988_SNP [dm6]	G	A	2.057e^-4	1	DOWNSTREAM tko INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9125450	3R_9125450_SNP [dm3] 3R_13299728_SNP [dm6]	A	G	2.060e^-4	1	INTRON CG8774
2R	17547661	2R_17547661_SNP [dm3] 2R_21660156_SNP [dm6]	C	T	2.065e^-4	1	UPSTREAM Rae1 DOWNSTREAM pirk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	6950546	3R_6950546_DEL [dm3] 3R_11124824_DEL [dm6]	CTAATCAT	G	2.065e^-4	1	INTERGENIC
3R	9129224	3R_9129224_SNP [dm3] 3R_13303502_SNP [dm6]	G	A	2.069e^-4	1	INTRON CG32473 & 1 other
3R	9129233	3R_9129233_SNP [dm3] 3R_13303511_SNP [dm6]	G	C	2.069e^-4	1	INTRON CG32473 & 1 other
X	3174643	X_3174643_SNP [dm3] X_3280610_SNP [dm6]	T	C	2.078e^-4	1	SYNONYMOUS_CODING dnc UTR_5_PRIME dnc INTRON dnc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13377809	2L_13377809_SNP [dm3] 2L_13377809_SNP [dm6]	C	G	2.079e^-4	1	NON_SYNONYMOUS_CODING CG9302	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7512969	2R_7512969_SNP [dm3] 2R_11625464_SNP [dm6]	A	G	2.086e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	15366058	3R_15366058_SNP [dm3] 3R_19540336_SNP [dm6]	T	C	2.089e^-4	1	INTRON Dys
X	2769334	X_2769334_SNP [dm3] X_2875301_SNP [dm6]	T	A	2.090e^-4	1	DOWNSTREAM CG14417 INTRON kirre
2L	16520526	2L_16520526_SNP [dm3] 2L_16520526_SNP [dm6]	T	G	2.094e^-4	1	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	19518834	2R_19518834_SNP [dm3] 2R_23631311_SNP [dm6]	T	C	2.103e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE
2L	1696332	2L_1696332_SNP [dm3] 2L_1696332_SNP [dm6]	C	T	2.117e^-4	1	SYNONYMOUS_CODING chinmo UTR_3_PRIME chinmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9485228	3L_9485228_INS [dm3] 3L_9492128_INS [dm6]	T	TGT	2.120e^-4	1	UTR_5_PRIME CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16921015	3R_16921015_INS [dm3] 3R_21095293_INS [dm6]	A	AA	2.124e^-4	1	INTRON RhoGAP93B EXON CR44178	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17990646	2R_17990646_SNP [dm3] 2R_22103141_SNP [dm6]	T	C	2.129e^-4	1	UPSTREAM CG6613 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4155160	3L_4155160_SNP [dm3] 3L_4155160_SNP [dm6]	G	C	2.129e^-4	1	INTRON nab	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	13633749	2R_13633749_SNP [dm3] 2R_17746244_SNP [dm6]	G	A	2.136e^-4	1	SYNONYMOUS_CODING sub DOWNSTREAM Ir54a
X	10078498	X_10078498_SNP [dm3] X_10184465_SNP [dm6]	A	G	2.149e^-4	1	INTRON CG43902 & 1 other
2L	8660573	2L_8660573_SNP [dm3] 2L_8660573_SNP [dm6]	C	T	2.157e^-4	1	SPLICE_SITE_REGION Sema-1a SYNONYMOUS_CODING Sema-1a
3L	2602196	3L_2602196_SNP [dm3] 3L_2602196_SNP [dm6]	T	C	2.159e^-4	1	NON_SYNONYMOUS_CODING Pxn DOWNSTREAM CG16986	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14156185	2R_14156185_SNP [dm3] 2R_18268680_SNP [dm6]	A	G	2.159e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16520383	2L_16520383_SNP [dm3] 2L_16520383_SNP [dm6]	C	G	2.161e^-4	1	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3L	14689125	3L_14689125_SNP [dm3] 3L_14696025_SNP [dm6]	T	A	2.162e^-4	1	DOWNSTREAM CG13474 INTRON ome
2L	16204947	2L_16204947_SNP [dm3] 2L_16204947_SNP [dm6]	G	A	2.171e^-4	1	INTERGENIC
2L	16192667	2L_16192667_SNP [dm3] 2L_16192667_SNP [dm6]	C	T	2.187e^-4	1	INTERGENIC
2R	19242696	2R_19242696_SNP [dm3] 2R_23355173_SNP [dm6]	C	A	2.188e^-4	1	UTR_3_PRIME CG30409 UPSTREAM Rpi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15498295	X_15498295_DEL [dm3] X_15604262_DEL [dm6]	CTGTTTTTT	C	2.191e^-4	1	UTR_3_PRIME sog DOWNSTREAM sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25566068	3R_25566068_SNP [dm3] 3R_29740346_SNP [dm6]	T	A	2.192e^-4	1	UPSTREAM CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20785476	3R_20785476_SNP [dm3] 3R_24959754_SNP [dm6]	A	T	2.195e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13885713	2R_13885713_SNP [dm3] 2R_17998208_SNP [dm6]	A	G	2.197e^-4	1	INTRON dpr13
2L	7076685	2L_7076685_SNP [dm3] 2L_7076685_SNP [dm6]	G	T	2.206e^-4	1	INTRON Pvf2
3L	3532194	3L_3532194_SNP [dm3] 3L_3532194_SNP [dm6]	A	G	2.214e^-4	1	INTRON Eip63E
3R	9148139	3R_9148139_SNP [dm3] 3R_13322417_SNP [dm6]	C	A	2.214e^-4	1	INTERGENIC
3R	8817157	3R_8817157_SNP [dm3] 3R_12991435_SNP [dm6]	A	G	2.218e^-4	1	UTR_3_PRIME CG31342 DOWNSTREAM yellow-f
2R	4441312	2R_4441312_SNP [dm3] 2R_8553807_SNP [dm6]	A	G	2.219e^-4	1	INTERGENIC
3R	26537732	3R_26537732_SNP [dm3] 3R_30712010_SNP [dm6]	G	C	2.223e^-4	1	INTERGENIC
3R	25267346	3R_25267346_SNP [dm3] 3R_29441624_SNP [dm6]	T	A	2.235e^-4	1	INTRON Ptp99A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8464741	3L_8464741_SNP [dm3] 3L_8471641_SNP [dm6]	C	T	2.238e^-4	1	UTR_3_PRIME Gug
2L	15098188	2L_15098188_SNP [dm3] 2L_15098188_SNP [dm6]	T	C	2.240e^-4	1	INTERGENIC
3R	13636077	3R_13636077_SNP [dm3] 3R_17810355_SNP [dm6]	C	T	2.242e^-4	1	SYNONYMOUS_CODING CG18012 UTR_3_PRIME CG18012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	3282153	3R_3282153_SNP [dm3] 3R_7456431_SNP [dm6]	C	A	2.246e^-4	1	INTERGENIC
2L	21877568	2L_21877568_SNP [dm3] 2L_21877568_SNP [dm6]	G	T	2.246e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	3986429	2R_3986429_SNP [dm3] 2R_8098924_SNP [dm6]	T	A	2.249e^-4	1	UPSTREAM CG8712 INTRON CG11210	TF binding site BDTNP1_TFBS_dl
3L	18881979	3L_18881979_SNP [dm3] 3L_18888879_SNP [dm6]	A	T	2.252e^-4	1	INTRON CG3961
2L	7158535	2L_7158535_SNP [dm3] 2L_7158535_SNP [dm6]	C	T	2.253e^-4	1	UPSTREAM Pvf3 INTERGENIC
X	7789593	X_7789593_SNP [dm3] X_7895560_SNP [dm6]	A	G	2.266e^-4	1	SYNONYMOUS_CODING p115	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16289094	2L_16289094_SNP [dm3] 2L_16289094_SNP [dm6]	T	A	2.274e^-4	1	INTRON pkaap	TF binding site mE1_TFBS_disco mE1_TFBS_sens
3R	13105883	3R_13105883_SNP [dm3] 3R_17280161_SNP [dm6]	T	C	2.276e^-4	1	INTERGENIC
X	9012786	X_9012786_SNP [dm3] X_9118753_SNP [dm6]	T	C	2.286e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	10046099	2R_10046099_SNP [dm3] 2R_14158594_SNP [dm6]	T	C	2.296e^-4	1	SYNONYMOUS_CODING CG13016 DOWNSTREAM CG8257	TF binding site mE1_TFBS_sens
2R	6736137	2R_6736137_SNP [dm3] 2R_10848632_SNP [dm6]	C	T	2.298e^-4	1	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad
3R	9163030	3R_9163030_SNP [dm3] 3R_13337308_SNP [dm6]	T	C	2.304e^-4	1	INTERGENIC
3R	5465519	3R_5465519_DEL [dm3] 3R_9639797_DEL [dm6]	ATATCGG	A	2.305e^-4	1	UPSTREAM Dh44 INTRON Dh44
2R	7512917	2R_7512917_DEL [dm3] 2R_11625412_DEL [dm6]	CT	A	2.317e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7512921	2R_7512921_SNP [dm3] 2R_11625416_SNP [dm6]	T	A	2.317e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7512923	2R_7512923_MNP [dm3] 2R_11625418_MNP [dm6]	CCA	AAG	2.317e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11183481	3L_11183481_SNP [dm3] 3L_11190381_SNP [dm6]	G	T	2.320e^-4	1	INTRON GlcAT-P
3R	26793188	3R_26793188_SNP [dm3] 3R_30967466_SNP [dm6]	G	A	2.321e^-4	1	DOWNSTREAM 5-HT7 INTERGENIC
2L	12529499	2L_12529499_SNP [dm3] 2L_12529499_SNP [dm6]	G	A	2.326e^-4	1	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	2987389	3R_2987389_SNP [dm3] 3R_7161667_SNP [dm6]	A	G	2.344e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13139091	2L_13139091_SNP [dm3] 2L_13139091_SNP [dm6]	C	G	2.355e^-4	1	INTERGENIC
3L	17994531	3L_17994531_INS [dm3] 3L_18001431_INS [dm6]	T	TAAC	2.357e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14106536	3R_14106536_SNP [dm3] 3R_18280814_SNP [dm6]	A	T	2.360e^-4	1	INTRON eIF-1A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15346757	3R_15346757_DEL [dm3] 3R_19521035_DEL [dm6]	TGTTGCTTT	T	2.365e^-4	1	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11420044	2L_11420044_SNP [dm3] 2L_11420044_SNP [dm6]	G	C	2.365e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
2L	13335123	2L_13335123_SNP [dm3] 2L_13335123_SNP [dm6]	T	A	2.367e^-4	1	INTERGENIC
3L	4147696	3L_4147696_SNP [dm3] 3L_4147696_SNP [dm6]	T	G	2.376e^-4	1	UPSTREAM CG1299 INTERGENIC
3R	14883999	3R_14883999_INS [dm3] 3R_19058277_INS [dm6]	C	CAGTCATTC	2.377e^-4	1	INTRON cdi	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8917575	3L_8917575_SNP [dm3] 3L_8924475_SNP [dm6]	G	A	2.380e^-4	1	INTRON Tsp66E
2L	1062303	2L_1062303_SNP [dm3] 2L_1062303_SNP [dm6]	A	T	2.382e^-4	1	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	2999896	2R_2999896_SNP [dm3] 2R_7112391_SNP [dm6]	G	T	2.383e^-4	1	INTRON esn	TF binding site mE1_TFBS_chinmo
2R	19345575	2R_19345575_SNP [dm3] 2R_23458052_SNP [dm6]	C	T	2.387e^-4	1	DOWNSTREAM skpF INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15632733	3R_15632733_SNP [dm3] 3R_19807011_SNP [dm6]	C	G	2.417e^-4	1	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	26543887	3R_26543887_SNP [dm3] 3R_30718165_SNP [dm6]	A	G	2.418e^-4	1	INTERGENIC
3R	18248778	3R_18248778_SNP [dm3] 3R_22423056_SNP [dm6]	A	C	2.421e^-4	1	UTR_3_PRIME mats DOWNSTREAM pinta & 1 other	regulatory region REDfly_CRMs
3R	14881168	3R_14881168_SNP [dm3] 3R_19055446_SNP [dm6]	C	T	2.422e^-4	1	INTRON cdi	TF binding site BDTNP1_TFBS_twi
3R	8852697	3R_8852697_SNP [dm3] 3R_13026975_SNP [dm6]	A	C	2.425e^-4	1	UTR_3_PRIME CG12360 DOWNSTREAM CG12360 & 1 other
2R	17377710	2R_17377710_INS [dm3] 2R_21490205_INS [dm6]	T	AA	2.439e^-4	1	INTRON Fkbp14
3R	9131555	3R_9131555_INS [dm3] 3R_13305833_INS [dm6]	G	GG	2.441e^-4	1	INTRON CG32473
X	19369802	X_19369802_SNP [dm3] X_19475769_SNP [dm6]	T	C	2.452e^-4	1	SYNONYMOUS_CODING CG12200 INTRON CG32533
2L	15383969	2L_15383969_SNP [dm3] 2L_15383969_SNP [dm6]	T	G	2.459e^-4	1	INTERGENIC
2L	9685249	2L_9685249_SNP [dm3] 2L_9685249_SNP [dm6]	G	T	2.465e^-4	1	INTRON Pka-C1
3R	9064717	3R_9064717_SNP [dm3] 3R_13238995_SNP [dm6]	C	G	2.467e^-4	1	INTRON Ace
3R	13105937	3R_13105937_SNP [dm3] 3R_17280215_SNP [dm6]	G	A	2.468e^-4	1	INTERGENIC
2R	8828738	2R_8828738_SNP [dm3] 2R_12941233_SNP [dm6]	T	A	2.477e^-4	1	DOWNSTREAM Sans INTRON Mdr49
2R	12871345	2R_12871345_SNP [dm3] 2R_16983840_SNP [dm6]	A	G	2.485e^-4	1	INTRON Cbp53E
X	7782485	X_7782485_SNP [dm3] X_7888452_SNP [dm6]	A	G	2.494e^-4	1	SYNONYMOUS_CODING CG10932 DOWNSTREAM Nek2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12982265	2L_12982265_SNP [dm3] 2L_12982265_SNP [dm6]	A	T	2.517e^-4	1	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7240669	3R_7240669_SNP [dm3] 3R_11414947_SNP [dm6]	C	T	2.518e^-4	1	SYNONYMOUS_CODING Ranbp9	TF binding site mE1_TFBS_cad
2L	17036926	2L_17036926_SNP [dm3] 2L_17036926_SNP [dm6]	G	A	2.529e^-4	1	INTERGENIC
2L	21716038	2L_21716038_DEL [dm3] 2L_21716038_DEL [dm6]	TAAAATAT	T	2.532e^-4	1	INTRON CG31619	transposable element FlyBase
3R	3244772	3R_3244772_SNP [dm3] 3R_7419050_SNP [dm6]	G	A	2.533e^-4	1	NON_SYNONYMOUS_CODING CG31544
3R	9130994	3R_9130994_DEL [dm3] 3R_13305272_DEL [dm6]	CCAC	C	2.564e^-4	1	INTRON CG32473	TF binding site mE1_TFBS_Trl
2L	15567393	2L_15567393_SNP [dm3] 2L_15567393_SNP [dm6]	T	A	2.567e^-4	1	INTRON kek3
2L	15567395	2L_15567395_SNP [dm3] 2L_15567395_SNP [dm6]	T	G	2.567e^-4	1	INTRON kek3
3L	14327894	3L_14327894_SNP [dm3] 3L_14334794_SNP [dm6]	C	A	2.580e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16609360	X_16609360_SNP [dm3] X_16715327_SNP [dm6]	A	G	2.583e^-4	1	DOWNSTREAM CG13008 INTRON CG34325
2L	14244643	2L_14244643_SNP [dm3] 2L_14244643_SNP [dm6]	G	C	2.589e^-4	1	INTERGENIC
2R	3986074	2R_3986074_SNP [dm3] 2R_8098569_SNP [dm6]	C	A	2.604e^-4	1	UPSTREAM CG11210 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
X	7786831	X_7786831_SNP [dm3] X_7892798_SNP [dm6]	A	T	2.618e^-4	1	DOWNSTREAM CG18624 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	4633241	2L_4633241_SNP [dm3] 2L_4633241_SNP [dm6]	T	A	2.618e^-4	1	DOWNSTREAM CR45452 INTERGENIC	TF binding site mE1_TFBS_inv
3R	842652	3R_842652_SNP [dm3] 3R_5016930_SNP [dm6]	T	A	2.621e^-4	1	INTRON CR45585	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	842653	3R_842653_SNP [dm3] 3R_5016931_SNP [dm6]	G	A	2.621e^-4	1	INTRON CR45585	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10707604	3L_10707604_SNP [dm3] 3L_10714504_SNP [dm6]	A	G	2.641e^-4	1	INTERGENIC
3R	14881058	3R_14881058_SNP [dm3] 3R_19055336_SNP [dm6]	A	T	2.662e^-4	1	INTRON cdi	TF binding site BDTNP1_TFBS_twi
X	22335935	X_22335935_INS [dm3] X_22934099_INS [dm6]	T	TT	2.663e^-4	1	INTERGENIC
3R	962541	3R_962541_SNP [dm3] 3R_5136819_SNP [dm6]	C	G	2.665e^-4	1	DOWNSTREAM CG12589 INTERGENIC
3R	5197966	3R_5197966_SNP [dm3] 3R_9372244_SNP [dm6]	T	G	2.671e^-4	1	NON_SYNONYMOUS_CODING FER UPSTREAM FER INTRON FER
2L	9418816	2L_9418816_SNP [dm3] 2L_9418816_SNP [dm6]	A	G	2.673e^-4	1	INTRON Mco1
3R	8938995	3R_8938995_SNP [dm3] 3R_13113273_SNP [dm6]	T	G	2.676e^-4	1	INTRON timeout
2R	806640	2R_806640_SNP [dm3] 2R_4919135_SNP [dm6]	A	C	2.681e^-4	1	INTRON Ir41a	transposable element FlyBase
2R	5939867	2R_5939867_INS [dm3] 2R_10052362_INS [dm6]	G	GCACTTGACG	2.692e^-4	1	UPSTREAM magu & 1 other DOWNSTREAM CR44297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	8945997	3R_8945997_SNP [dm3] 3R_13120275_SNP [dm6]	G	A	2.703e^-4	1	INTRON timeout
3L	12054202	3L_12054202_SNP [dm3] 3L_12061102_SNP [dm6]	G	T	2.705e^-4	1	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13495553	2R_13495553_SNP [dm3] 2R_17608048_SNP [dm6]	C	G	2.712e^-4	1	SYNONYMOUS_CODING CG10936
3R	26581998	3R_26581998_SNP [dm3] 3R_30756276_SNP [dm6]	A	G	2.718e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26547111	3R_26547111_SNP [dm3] 3R_30721389_SNP [dm6]	T	G	2.719e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16833674	3R_16833674_SNP [dm3] 3R_21007952_SNP [dm6]	G	A	2.720e^-4	1	UPSTREAM CG10827 INTRON Calx	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16833719	3R_16833719_SNP [dm3] 3R_21007997_SNP [dm6]	G	C	2.720e^-4	1	INTRON Calx	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	963998	3R_963998_SNP [dm3] 3R_5138276_SNP [dm6]	C	T	2.729e^-4	1	UTR_5_PRIME CG12589 UPSTREAM CG12589	TF binding site mE1_TFBS_cad
3R	15442770	3R_15442770_SNP [dm3] 3R_19617048_SNP [dm6]	A	C	2.732e^-4	1	INTRON CG6231
3R	18403954	3R_18403954_SNP [dm3] 3R_22578232_SNP [dm6]	T	C	2.749e^-4	1	INTRON CG33110
3R	25919558	3R_25919558_INS [dm3] 3R_30093836_INS [dm6]	T	TT	2.753e^-4	1	INTRON sima
2R	12498333	2R_12498333_SNP [dm3] 2R_16610828_SNP [dm6]	C	T	2.754e^-4	1	INTRON CG5065
2R	12498335	2R_12498335_SNP [dm3] 2R_16610830_SNP [dm6]	T	C	2.754e^-4	1	INTRON CG5065
3R	915271	3R_915271_SNP [dm3] 3R_5089549_SNP [dm6]	T	A	2.757e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6894924	2R_6894924_SNP [dm3] 2R_11007419_SNP [dm6]	T	A	2.757e^-4	1	INTRON luna
3R	26725543	3R_26725543_INS [dm3] 3R_30899821_INS [dm6]	T	TT	2.760e^-4	1	DOWNSTREAM CG33483 INTRON Cyp4c3
2L	12801677	2L_12801677_SNP [dm3] 2L_12801677_SNP [dm6]	C	G	2.777e^-4	1	INTERGENIC
2R	15670805	2R_15670805_SNP [dm3] 2R_19783300_SNP [dm6]	G	C	2.800e^-4	1	UPSTREAM CR45231 DOWNSTREAM Obp56g INTERGENIC
2L	2708527	2L_2708527_SNP [dm3] 2L_2708527_SNP [dm6]	C	G	2.801e^-4	1	INTRON CG31690
X	16750651	X_16750651_SNP [dm3] X_16856618_SNP [dm6]	C	T	2.809e^-4	1	INTRON CG13003	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	21733290	2L_21733290_INS [dm3] 2L_21733290_INS [dm6]	C	CGTCTACTATATTACTAT...	2.821e^-4	1	INTERGENIC	transposable element FlyBase
3L	10935945	3L_10935945_SNP [dm3] 3L_10942845_SNP [dm6]	T	A	2.844e^-4	1	INTERGENIC
2R	5939863	2R_5939863_SNP [dm3] 2R_10052358_SNP [dm6]	T	A	2.863e^-4	1	UPSTREAM magu & 1 other DOWNSTREAM CR44297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	2056454	3L_2056454_SNP [dm3] 3L_2056454_SNP [dm6]	T	C	2.870e^-4	1	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12765207	2R_12765207_SNP [dm3] 2R_16877702_SNP [dm6]	C	G	2.876e^-4	1	SYNONYMOUS_CODING CG8910	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26537666	3R_26537666_DEL [dm3] 3R_30711944_DEL [dm6]	CC	C	2.878e^-4	1	INTERGENIC
2L	15306530	2L_15306530_SNP [dm3] 2L_15306530_SNP [dm6]	A	G	2.886e^-4	1	INTERGENIC
X	4222872	X_4222872_SNP [dm3] X_4328839_SNP [dm6]	G	A	2.889e^-4	1	INTRON norpA & 1 other	TF binding site BDTNP1_TFBS_twi
3L	10935328	3L_10935328_SNP [dm3] 3L_10942228_SNP [dm6]	A	C	2.891e^-4	1	INTERGENIC
2L	13591339	2L_13591339_SNP [dm3] 2L_13591339_SNP [dm6]	T	C	2.898e^-4	1	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14455801	3R_14455801_SNP [dm3] 3R_18630079_SNP [dm6]	G	A	2.901e^-4	1	SYNONYMOUS_CODING CG14301 INTRON qin
3L	10571829	3L_10571829_DEL [dm3] 3L_10578729_DEL [dm6]	GG	A	2.905e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6884562	2L_6884562_INS [dm3] 2L_6884562_INS [dm6]	A	ATG	2.910e^-4	1	INTRON Nlg2
2L	15746171	2L_15746171_SNP [dm3] 2L_15746171_SNP [dm6]	A	C	2.916e^-4	1	UPSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	15632750	3R_15632750_SNP [dm3] 3R_19807028_SNP [dm6]	A	G	2.918e^-4	1	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13454416	3L_13454416_SNP [dm3] 3L_13461316_SNP [dm6]	C	T	2.918e^-4	1	SYNONYMOUS_CODING CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10690854	3R_10690854_SNP [dm3] 3R_14865132_SNP [dm6]	G	C	2.922e^-4	1	INTRON btsz
3R	13358184	3R_13358184_INS [dm3] 3R_17532462_INS [dm6]	G	GCG	2.933e^-4	1	UTR_3_PRIME CG5823
3R	58323	3R_58323_INS [dm3] 3R_4232601_INS [dm6]	A	ATAA	2.937e^-4	1	UPSTREAM abs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	14156218	2R_14156218_SNP [dm3] 2R_18268713_SNP [dm6]	A	T	2.940e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156223	2R_14156223_DEL [dm3] 2R_18268718_DEL [dm6]	AT	A	2.940e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	3790169	X_3790169_SNP [dm3] X_3896136_SNP [dm6]	C	G	2.946e^-4	1	NON_SYNONYMOUS_CODING CG42541	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12982292	2L_12982292_SNP [dm3] 2L_12982292_SNP [dm6]	G	A	2.948e^-4	1	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9718789	3R_9718789_SNP [dm3] 3R_13893067_SNP [dm6]	T	G	2.952e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	18753570	2R_18753570_DEL [dm3] 2R_22866047_DEL [dm6]	TGTTGTC	T	2.978e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21161878	X_21161878_DEL [dm3] X_21290851_DEL [dm6]	TTT	CA	2.979e^-4	1	INTRON CG1494	transposable element FlyBase
3L	4385630	3L_4385630_SNP [dm3] 3L_4385630_SNP [dm6]	A	T	2.981e^-4	1	INTRON slow
3R	19368973	3R_19368973_SNP [dm3] 3R_23543251_SNP [dm6]	T	G	2.983e^-4	1	INTERGENIC
3L	12054193	3L_12054193_SNP [dm3] 3L_12061093_SNP [dm6]	C	G	3.000e^-4	1	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4148303	3L_4148303_SNP [dm3] 3L_4148303_SNP [dm6]	C	T	3.002e^-4	1	UPSTREAM CG1299 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	9068080	3R_9068080_DEL [dm3] 3R_13242358_DEL [dm6]	GTAAG	G	3.008e^-4	1	INTRON Ace
3L	7767278	3L_7767278_SNP [dm3] 3L_7774178_SNP [dm6]	T	C	3.028e^-4	1	INTRON Clk	regulatory region REDfly_CRMs
2L	12982269	2L_12982269_SNP [dm3] 2L_12982269_SNP [dm6]	G	A	3.035e^-4	1	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17967291	2R_17967291_SNP [dm3] 2R_22079786_SNP [dm6]	A	G	3.044e^-4	1	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6177830	2L_6177830_SNP [dm3] 2L_6177830_SNP [dm6]	C	T	3.045e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6971094	3R_6971094_INS [dm3] 3R_11145372_INS [dm6]	C	CGC	3.051e^-4	1	UPSTREAM CheA86a INTERGENIC
X	16874648	X_16874648_SNP [dm3] X_16980615_SNP [dm6]	G	T	3.051e^-4	1	INTRON CG45002
2R	2800280	2R_2800280_SNP [dm3] 2R_6912775_SNP [dm6]	T	C	3.055e^-4	1	INTRON CG30158
3L	14603655	3L_14603655_SNP [dm3] 3L_14610555_SNP [dm6]	T	G	3.056e^-4	1	INTERGENIC
3L	9330333	3L_9330333_INS [dm3] 3L_9337233_INS [dm6]	C	CAATGAATATGCTAAGATTT...	3.058e^-4	1	INTRON PGRP-LA
2L	12651009	2L_12651009_DEL [dm3] 2L_12651009_DEL [dm6]	CAC	C	3.058e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2686113	3L_2686113_SNP [dm3] 3L_2686113_SNP [dm6]	C	T	3.063e^-4	1	INTRON Fife
2R	11617898	2R_11617898_SNP [dm3] 2R_15730393_SNP [dm6]	T	C	3.063e^-4	1	INTRON CG30089
2L	10956528	2L_10956528_SNP [dm3] 2L_10956528_SNP [dm6]	T	G	3.063e^-4	1	INTRON dpr2
3L	13353831	3L_13353831_SNP [dm3] 3L_13360731_SNP [dm6]	C	G	3.068e^-4	1	INTERGENIC
X	3519914	X_3519914_SNP [dm3] X_3625881_SNP [dm6]	G	T	3.068e^-4	1	INTRON AstA-R1
2R	12601389	2R_12601389_SNP [dm3] 2R_16713884_SNP [dm6]	A	T	3.069e^-4	1	INTRON CG30463
3R	15442835	3R_15442835_SNP [dm3] 3R_19617113_SNP [dm6]	C	T	3.094e^-4	1	INTRON CG6231
2R	14876029	2R_14876029_SNP [dm3] 2R_18988524_SNP [dm6]	T	C	3.094e^-4	1	INTRON tn
3R	15442837	3R_15442837_SNP [dm3] 3R_19617115_SNP [dm6]	C	T	3.097e^-4	1	INTRON CG6231
2L	1534066	2L_1534066_SNP [dm3] 2L_1534066_SNP [dm6]	A	C	3.101e^-4	1	INTERGENIC
2R	8335897	2R_8335897_SNP [dm3] 2R_12448392_SNP [dm6]	C	T	3.104e^-4	1	SYNONYMOUS_CODING Dyb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9063088	3R_9063088_SNP [dm3] 3R_13237366_SNP [dm6]	A	T	3.105e^-4	1	INTRON Ace
3L	10935960	3L_10935960_SNP [dm3] 3L_10942860_SNP [dm6]	T	C	3.106e^-4	1	INTERGENIC
2L	15746092	2L_15746092_SNP [dm3] 2L_15746092_SNP [dm6]	A	C	3.110e^-4	1	UPSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	16868115	X_16868115_SNP [dm3] X_16974082_SNP [dm6]	G	C	3.125e^-4	1	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	26793555	3R_26793555_SNP [dm3] 3R_30967833_SNP [dm6]	A	C	3.137e^-4	1	DOWNSTREAM 5-HT7 INTERGENIC
X	15327844	X_15327844_SNP [dm3] X_15433811_SNP [dm6]	T	C	3.139e^-4	1	INTRON Cngl
3R	3162452	3R_3162452_SNP [dm3] 3R_7336730_SNP [dm6]	G	T	3.145e^-4	1	INTERGENIC
3L	960106	3L_960106_SNP [dm3] 3L_960106_SNP [dm6]	C	A	3.158e^-4	1	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
2R	17410057	2R_17410057_SNP [dm3] 2R_21522552_SNP [dm6]	T	A	3.170e^-4	1	UTR_5_PRIME Egfr UPSTREAM CG30289	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	12529962	2L_12529962_SNP [dm3] 2L_12529962_SNP [dm6]	A	G	3.172e^-4	1	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7513015	2R_7513015_SNP [dm3] 2R_11625510_SNP [dm6]	A	G	3.183e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	14092212	3L_14092212_SNP [dm3] 3L_14099112_SNP [dm6]	T	C	3.184e^-4	1	INTERGENIC
3L	4148325	3L_4148325_SNP [dm3] 3L_4148325_SNP [dm6]	A	G	3.187e^-4	1	UPSTREAM CG1299 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	15615672	2L_15615672_SNP [dm3] 2L_15615672_SNP [dm6]	G	A	3.187e^-4	1	SYNONYMOUS_CODING CG15253 UPSTREAM CG15254
3R	916814	3R_916814_DEL [dm3] 3R_5091092_DEL [dm6]	TAACG	A	3.189e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	9758609	X_9758609_SNP [dm3] X_9864576_SNP [dm6]	A	G	3.192e^-4	1	UPSTREAM Ser7 INTERGENIC
2R	4758377	2R_4758377_SNP [dm3] 2R_8870872_SNP [dm6]	T	A	3.194e^-4	1	INTRON RyR	TF binding site mE1_TFBS_cad
2R	5933959	2R_5933959_SNP [dm3] 2R_10046454_SNP [dm6]	A	G	3.199e^-4	1	INTRON oys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	4758574	2R_4758574_SNP [dm3] 2R_8871069_SNP [dm6]	T	A	3.208e^-4	1	INTRON RyR
2L	16147591	2L_16147591_SNP [dm3] 2L_16147591_SNP [dm6]	A	T	3.214e^-4	1	INTERGENIC
2L	13590969	2L_13590969_SNP [dm3] 2L_13590969_SNP [dm6]	A	C	3.228e^-4	1	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	16866379	2L_16866379_SNP [dm3] 2L_16866379_SNP [dm6]	G	C	3.232e^-4	1	INTERGENIC
2R	6342875	2R_6342875_SNP [dm3] 2R_10455370_SNP [dm6]	A	G	3.245e^-4	1	SYNONYMOUS_CODING Cyp49a1 INTRON Galphao
2L	2712044	2L_2712044_SNP [dm3] 2L_2712044_SNP [dm6]	G	T	3.250e^-4	1	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18807827	2L_18807827_SNP [dm3] 2L_18807827_SNP [dm6]	T	C	3.251e^-4	1	DOWNSTREAM CG42502 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2R	4523947	2R_4523947_SNP [dm3] 2R_8636442_SNP [dm6]	G	T	3.268e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	11440481	X_11440481_SNP [dm3] X_11546448_SNP [dm6]	T	A	3.282e^-4	1	UPSTREAM mir-2492 INTRON Drak
3R	2609294	3R_2609294_SNP [dm3] 3R_6783572_SNP [dm6]	C	T	3.291e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	8649339	2L_8649339_SNP [dm3] 2L_8649339_SNP [dm6]	A	G	3.298e^-4	1	INTRON Sema-1a
2L	15466127	2L_15466127_SNP [dm3] 2L_15466127_SNP [dm6]	A	T	3.306e^-4	1	INTERGENIC
3R	8938980	3R_8938980_SNP [dm3] 3R_13113258_SNP [dm6]	T	G	3.321e^-4	1	INTRON timeout
3L	10935879	3L_10935879_SNP [dm3] 3L_10942779_SNP [dm6]	G	A	3.322e^-4	1	INTERGENIC
3R	9081833	3R_9081833_SNP [dm3] 3R_13256111_SNP [dm6]	G	A	3.322e^-4	1	INTRON Ace
2L	13377622	2L_13377622_SNP [dm3] 2L_13377622_SNP [dm6]	G	A	3.323e^-4	1	SYNONYMOUS_CODING CG9302	TF binding site mE1_TFBS_HSA
3L	18889880	3L_18889880_SNP [dm3] 3L_18896780_SNP [dm6]	C	T	3.342e^-4	1	UPSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	7242304	3R_7242304_SNP [dm3] 3R_11416582_SNP [dm6]	T	C	3.343e^-4	1	SYNONYMOUS_CODING CG6723 DOWNSTREAM Ranbp9	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20787723	3R_20787723_SNP [dm3] 3R_24962001_SNP [dm6]	G	A	3.361e^-4	1	INTERGENIC
3L	10707669	3L_10707669_SNP [dm3] 3L_10714569_SNP [dm6]	A	T	3.363e^-4	1	INTERGENIC
3R	15442783	3R_15442783_SNP [dm3] 3R_19617061_SNP [dm6]	A	T	3.388e^-4	1	INTRON CG6231
3R	25347027	3R_25347027_SNP [dm3] 3R_29521305_SNP [dm6]	C	T	3.392e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	16520302	2L_16520302_SNP [dm3] 2L_16520302_SNP [dm6]	A	C	3.400e^-4	1	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
X	4954059	X_4954059_INS [dm3] X_5060026_INS [dm6]	G	GG	3.422e^-4	1	INTRON CR44833 & 1 other
2R	14141618	2R_14141618_DEL [dm3] 2R_18254113_DEL [dm6]	ATCGA	A	3.423e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14259604	3R_14259604_SNP [dm3] 3R_18433882_SNP [dm6]	G	A	3.423e^-4	1	INTRON fru
3L	11647140	3L_11647140_SNP [dm3] 3L_11654040_SNP [dm6]	C	T	3.431e^-4	1	SYNONYMOUS_CODING CG32085
3L	2652349	3L_2652349_SNP [dm3] 3L_2652349_SNP [dm6]	C	G	3.432e^-4	1	SYNONYMOUS_CODING Snup START_GAINED CG42304 UTR_5_PRIME CG42304 UPSTREAM Aats-pro & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18888371	3L_18888371_SNP [dm3] 3L_18895271_SNP [dm6]	T	C	3.432e^-4	1	DOWNSTREAM snoRNA:Psi28S-2566 INTRON CG3902
2R	12032783	2R_12032783_SNP [dm3] 2R_16145278_SNP [dm6]	T	C	3.435e^-4	1	SYNONYMOUS_CODING Aats-cys DOWNSTREAM Ext2
3L	18310793	3L_18310793_SNP [dm3] 3L_18317693_SNP [dm6]	C	G	3.441e^-4	1	INTERGENIC
3L	2056132	3L_2056132_SNP [dm3] 3L_2056132_SNP [dm6]	G	T	3.446e^-4	1	NON_SYNONYMOUS_CODING sls INTRON sls
2R	17377616	2R_17377616_SNP [dm3] 2R_21490111_SNP [dm6]	G	T	3.446e^-4	1	INTRON Fkbp14
2R	12339895	2R_12339895_SNP [dm3] 2R_16452390_SNP [dm6]	G	C	3.447e^-4	1	INTERGENIC
2R	14156232	2R_14156232_SNP [dm3] 2R_18268727_SNP [dm6]	A	G	3.447e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	4792295	2R_4792295_SNP [dm3] 2R_8904790_SNP [dm6]	C	T	3.451e^-4	1	UTR_3_PRIME Ggamma1 DOWNSTREAM CG8258	TF binding site mE1_TFBS_cad
3R	20885084	3R_20885084_SNP [dm3] 3R_25059362_SNP [dm6]	T	C	3.463e^-4	1	SYNONYMOUS_CODING Unc-13-4B INTRON Unc-13-4B
3L	10707776	3L_10707776_SNP [dm3] 3L_10714676_SNP [dm6]	G	A	3.465e^-4	1	INTERGENIC
3R	25264380	3R_25264380_SNP [dm3] 3R_29438658_SNP [dm6]	A	T	3.467e^-4	1	INTRON Ptp99A
3R	15317615	3R_15317615_DEL [dm3] 3R_19491893_DEL [dm6]	AGCGATAAACA...	A	3.472e^-4	1	UPSTREAM CG15025 INTRON Dys
3L	16480169	3L_16480169_SNP [dm3] 3L_16487069_SNP [dm6]	T	C	3.472e^-4	1	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	16480193	3L_16480193_SNP [dm3] 3L_16487093_SNP [dm6]	A	T	3.472e^-4	1	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	876673	3L_876673_SNP [dm3] 3L_876673_SNP [dm6]	C	T	3.474e^-4	1	DOWNSTREAM CG13907 INTRON CG32479	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6937382	3R_6937382_SNP [dm3] 3R_11111660_SNP [dm6]	T	G	3.475e^-4	1	INTERGENIC
2L	4397271	2L_4397271_SNP [dm3] 2L_4397271_SNP [dm6]	C	T	3.478e^-4	1	SYNONYMOUS_CODING l_2_k05819
X	16609357	X_16609357_DEL [dm3] X_16715324_DEL [dm6]	AA	A	3.478e^-4	1	DOWNSTREAM CG13008 INTRON CG34325
3L	15401085	3L_15401085_SNP [dm3] 3L_15407985_SNP [dm6]	C	T	3.480e^-4	1	NON_SYNONYMOUS_CODING CG33259
2L	6177066	2L_6177066_SNP [dm3] 2L_6177066_SNP [dm6]	C	A	3.481e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15817873	X_15817873_SNP [dm3] X_15923840_SNP [dm6]	A	G	3.487e^-4	1	SYNONYMOUS_CODING CG8916	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13640075	3L_13640075_SNP [dm3] 3L_13646975_SNP [dm6]	C	T	3.488e^-4	1	INTRON bru-3
3L	13640085	3L_13640085_SNP [dm3] 3L_13646985_SNP [dm6]	C	T	3.488e^-4	1	INTRON bru-3
2R	16988446	2R_16988446_SNP [dm3] 2R_21100941_SNP [dm6]	G	A	3.497e^-4	1	NON_SYNONYMOUS_CODING CG34396 UPSTREAM ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	7510120	2R_7510120_SNP [dm3] 2R_11622615_SNP [dm6]	A	G	3.511e^-4	1	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	21110055	3L_21110055_SNP [dm3] 3L_21116955_SNP [dm6]	G	A	3.531e^-4	1	INTRON ko
X	7783508	X_7783508_SNP [dm3] X_7889475_SNP [dm6]	T	C	3.548e^-4	1	SYNONYMOUS_CODING Nek2 UPSTREAM CG10932	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
X	7783727	X_7783727_SNP [dm3] X_7889694_SNP [dm6]	G	T	3.553e^-4	1	SYNONYMOUS_CODING Nek2 UPSTREAM CG10932	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
X	7781112	X_7781112_SNP [dm3] X_7887079_SNP [dm6]	A	T	3.563e^-4	1	DOWNSTREAM CG10932 & 1 other INTERGENIC
X	15501028	X_15501028_SNP [dm3] X_15606995_SNP [dm6]	G	T	3.582e^-4	1	SYNONYMOUS_CODING sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11683164	2R_11683164_SNP [dm3] 2R_15795659_SNP [dm6]	A	G	3.585e^-4	1	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	15477352	2L_15477352_SNP [dm3] 2L_15477352_SNP [dm6]	C	T	3.593e^-4	1	SYNONYMOUS_CODING sna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3R	8938941	3R_8938941_SNP [dm3] 3R_13113219_SNP [dm6]	G	A	3.613e^-4	1	INTRON timeout
X	7789590	X_7789590_SNP [dm3] X_7895557_SNP [dm6]	G	T	3.616e^-4	1	SYNONYMOUS_CODING p115	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	915726	2L_915726_SNP [dm3] 2L_915726_SNP [dm6]	T	C	3.620e^-4	1	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16609369	X_16609369_DEL [dm3] X_16715336_DEL [dm6]	ATAT	A	3.623e^-4	1	DOWNSTREAM CG13008 INTRON CG34325
2L	16912759	2L_16912759_SNP [dm3] 2L_16912759_SNP [dm6]	G	C	3.632e^-4	1	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_sens
2L	15428661	2L_15428661_SNP [dm3] 2L_15428661_SNP [dm6]	C	T	3.637e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4397283	2L_4397283_SNP [dm3] 2L_4397283_SNP [dm6]	T	A	3.644e^-4	1	SYNONYMOUS_CODING l_2_k05819
2R	19557699	2R_19557699_SNP [dm3] 2R_23670176_SNP [dm6]	A	C	3.655e^-4	1	NON_SYNONYMOUS_CODING Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	884298	X_884298_DEL [dm3] X_990265_DEL [dm6]	CAGAGACTGGCAGATTGTTA...	C	3.657e^-4	1	UPSTREAM CG18823 INTERGENIC
X	8291967	X_8291967_SNP [dm3] X_8397934_SNP [dm6]	T	G	3.662e^-4	1	UTR_5_PRIME CG15345
2R	16128387	2R_16128387_SNP [dm3] 2R_20240882_SNP [dm6]	C	T	3.669e^-4	1	SPLICE_SITE_REGION Efhc1.2 INTRON Efhc1.2
2L	12982317	2L_12982317_SNP [dm3] 2L_12982317_SNP [dm6]	A	T	3.673e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16297756	2L_16297756_SNP [dm3] 2L_16297756_SNP [dm6]	A	G	3.681e^-4	1	SYNONYMOUS_CODING heix DOWNSTREAM Cyp303a1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12221297	X_12221297_SNP [dm3] X_12327264_SNP [dm6]	A	T	3.681e^-4	1	INTRON Ten-a
2R	16002578	2R_16002578_SNP [dm3] 2R_20115073_SNP [dm6]	C	T	3.684e^-4	1	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16054789	3L_16054789_SNP [dm3] 3L_16061689_SNP [dm6]	A	T	3.684e^-4	1	INTRON Mbs
2L	6824224	2L_6824224_SNP [dm3] 2L_6824224_SNP [dm6]	A	C	3.702e^-4	1	INTRON sens-2
2L	915961	2L_915961_SNP [dm3] 2L_915961_SNP [dm6]	G	A	3.711e^-4	1	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	754706	3L_754706_SNP [dm3] 3L_754706_SNP [dm6]	A	T	3.713e^-4	1	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	4792435	3L_4792435_SNP [dm3] 3L_4792435_SNP [dm6]	C	T	3.729e^-4	1	SYNONYMOUS_CODING RhoGEF64C	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
2L	6824213	2L_6824213_SNP [dm3] 2L_6824213_SNP [dm6]	G	T	3.746e^-4	1	INTRON sens-2
3R	26580162	3R_26580162_SNP [dm3] 3R_30754440_SNP [dm6]	G	C	3.751e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	7512844	2R_7512844_SNP [dm3] 2R_11625339_SNP [dm6]	A	C	3.751e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	903705	3R_903705_SNP [dm3] 3R_5077983_SNP [dm6]	T	C	3.778e^-4	1	UTR_3_PRIME corto	TF binding site mE1_TFBS_cad
2R	3007692	2R_3007692_SNP [dm3] 2R_7120187_SNP [dm6]	A	C	3.783e^-4	1	INTRON esn
3L	18310812	3L_18310812_SNP [dm3] 3L_18317712_SNP [dm6]	C	T	3.790e^-4	1	INTERGENIC
3L	14281822	3L_14281822_SNP [dm3] 3L_14288722_SNP [dm6]	A	G	3.791e^-4	1	INTRON fz
3L	2481565	3L_2481565_SNP [dm3] 3L_2481565_SNP [dm6]	C	T	3.795e^-4	1	INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	19122709	X_19122709_SNP [dm3] X_19228676_SNP [dm6]	G	A	3.796e^-4	1	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10809303	3L_10809303_SNP [dm3] 3L_10816203_SNP [dm6]	T	C	3.797e^-4	1	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
2L	21755744	2L_21755744_SNP [dm3] 2L_21755744_SNP [dm6]	A	C	3.798e^-4	1	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25267334	3R_25267334_SNP [dm3] 3R_29441612_SNP [dm6]	A	C	3.819e^-4	1	INTRON Ptp99A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	890419	3R_890419_DEL [dm3] 3R_5064697_DEL [dm6]	TG	T	3.821e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7379626	2R_7379626_SNP [dm3] 2R_11492121_SNP [dm6]	G	A	3.839e^-4	1	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9833455	3R_9833455_SNP [dm3] 3R_14007733_SNP [dm6]	A	C	3.842e^-4	1	INTRON rdx
3L	6352241	3L_6352241_SNP [dm3] 3L_6359141_SNP [dm6]	G	A	3.847e^-4	1	INTERGENIC
3L	6352406	3L_6352406_SNP [dm3] 3L_6359306_SNP [dm6]	A	T	3.858e^-4	1	INTERGENIC
3R	908608	3R_908608_DEL [dm3] 3R_5082886_DEL [dm6]	TG	T	3.863e^-4	1	UTR_3_PRIME corto DOWNSTREAM corto	TF binding site mE1_TFBS_sens
2L	12725414	2L_12725414_SNP [dm3] 2L_12725414_SNP [dm6]	T	C	3.867e^-4	1	INTRON MRP
3L	12987682	3L_12987682_SNP [dm3] 3L_12994582_SNP [dm6]	A	G	3.869e^-4	1	UPSTREAM CG11262 INTERGENIC
3R	15442810	3R_15442810_SNP [dm3] 3R_19617088_SNP [dm6]	C	T	3.895e^-4	1	INTRON CG6231
2R	2800291	2R_2800291_SNP [dm3] 2R_6912786_SNP [dm6]	A	G	3.898e^-4	1	INTRON CG30158
2R	14156160	2R_14156160_SNP [dm3] 2R_18268655_SNP [dm6]	G	T	3.899e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	6675347	X_6675347_SNP [dm3] X_6781314_SNP [dm6]	C	G	3.906e^-4	1	UTR_3_PRIME C3G DOWNSTREAM C3G
2L	19124718	2L_19124718_SNP [dm3] 2L_19124718_SNP [dm6]	C	A	3.918e^-4	1	UPSTREAM l_2_37Cc INTRON l_2_37Cb	TF binding site mE1_TFBS_cad
3L	10935946	3L_10935946_SNP [dm3] 3L_10942846_SNP [dm6]	T	A	3.924e^-4	1	INTERGENIC
2R	16648700	2R_16648700_SNP [dm3] 2R_20761195_SNP [dm6]	A	T	3.934e^-4	1	INTERGENIC
2L	2072941	2L_2072941_SNP [dm3] 2L_2072941_SNP [dm6]	A	T	3.941e^-4	1	INTRON dpr3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5196564	2R_5196564_DEL [dm3] 2R_9309059_DEL [dm6]	CC	C	3.944e^-4	1	UPSTREAM Myd88 DOWNSTREAM CG13739 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2L	10904673	2L_10904673_INS [dm3] 2L_10904673_INS [dm6]	T	TT	3.953e^-4	1	UPSTREAM CR45724 INTERGENIC
2R	7512930	2R_7512930_SNP [dm3] 2R_11625425_SNP [dm6]	G	T	3.959e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14244622	2L_14244622_SNP [dm3] 2L_14244622_SNP [dm6]	G	A	3.970e^-4	1	INTERGENIC
3L	10707606	3L_10707606_SNP [dm3] 3L_10714506_SNP [dm6]	A	T	3.971e^-4	1	INTERGENIC
2L	21867435	2L_21867435_SNP [dm3] 2L_21867435_SNP [dm6]	C	T	3.978e^-4	1	INTRON CR44917 EXON CR44919 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19078623	2L_19078623_SNP [dm3] 2L_19078623_SNP [dm6]	A	T	3.979e^-4	1	NON_SYNONYMOUS_CODING CG10700 DOWNSTREAM Lim3	TF binding site mE1_TFBS_sens
3R	13103007	3R_13103007_INS [dm3] 3R_17277285_INS [dm6]	T	TTT	4.003e^-4	1	INTERGENIC
2R	17547451	2R_17547451_SNP [dm3] 2R_21659946_SNP [dm6]	T	A	4.005e^-4	1	UTR_5_PRIME Rae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	6756640	2L_6756640_SNP [dm3] 2L_6756640_SNP [dm6]	C	A	4.014e^-4	1	DOWNSTREAM CG11221 INTERGENIC
3L	3532203	3L_3532203_DEL [dm3] 3L_3532203_DEL [dm6]	TATGGCACATT...	T	4.020e^-4	1	INTRON Eip63E
2R	4758942	2R_4758942_SNP [dm3] 2R_8871437_SNP [dm6]	G	A	4.027e^-4	1	INTRON RyR
X	3719562	X_3719562_SNP [dm3] X_3825529_SNP [dm6]	T	G	4.029e^-4	1	INTRON ec
3L	10707668	3L_10707668_SNP [dm3] 3L_10714568_SNP [dm6]	T	G	4.030e^-4	1	INTERGENIC
3R	8852744	3R_8852744_SNP [dm3] 3R_13027022_SNP [dm6]	C	T	4.031e^-4	1	UTR_3_PRIME CG12360 DOWNSTREAM CG12360 & 1 other
3R	8852745	3R_8852745_SNP [dm3] 3R_13027023_SNP [dm6]	C	A	4.031e^-4	1	UTR_3_PRIME CG12360 DOWNSTREAM CG12360 & 1 other
2L	10189067	2L_10189067_SNP [dm3] 2L_10189067_SNP [dm6]	G	A	4.033e^-4	1	SYNONYMOUS_CODING Sur DOWNSTREAM CG31874
3L	10109168	3L_10109168_SNP [dm3] 3L_10116068_SNP [dm6]	C	T	4.036e^-4	1	INTRON dpr6
2R	6928999	2R_6928999_SNP [dm3] 2R_11041494_SNP [dm6]	T	C	4.040e^-4	1	INTRON luna
3L	11852018	3L_11852018_SNP [dm3] 3L_11858918_SNP [dm6]	A	G	4.048e^-4	1	INTRON CG44837
3R	18795171	3R_18795171_SNP [dm3] 3R_22969449_SNP [dm6]	G	A	4.054e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8938812	3R_8938812_SNP [dm3] 3R_13113090_SNP [dm6]	T	A	4.058e^-4	1	INTRON timeout
3R	9133463	3R_9133463_SNP [dm3] 3R_13307741_SNP [dm6]	A	G	4.061e^-4	1	INTRON CG32473
3R	5213459	3R_5213459_SNP [dm3] 3R_9387737_SNP [dm6]	T	C	4.078e^-4	1	INTRON FER	TF binding site mE1_TFBS_HSA
3L	8694996	3L_8694996_INS [dm3] 3L_8701896_INS [dm6]	A	AA	4.079e^-4	1	INTERGENIC
3L	18889771	3L_18889771_SNP [dm3] 3L_18896671_SNP [dm6]	C	A	4.079e^-4	1	UPSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2311569	3L_2311569_SNP [dm3] 3L_2311569_SNP [dm6]	C	T	4.083e^-4	1	INTERGENIC
X	13467744	X_13467744_SNP [dm3] X_13573711_SNP [dm6]	T	C	4.083e^-4	1	INTRON Tango13
2R	2477195	2R_2477195_SNP [dm3] 2R_6589690_SNP [dm6]	C	A	4.091e^-4	1	INTRON jing
2R	7512864	2R_7512864_SNP [dm3] 2R_11625359_SNP [dm6]	G	A	4.096e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15292026	3R_15292026_SNP [dm3] 3R_19466304_SNP [dm6]	C	T	4.109e^-4	1	INTRON Dys
X	21886990	X_21886990_DEL [dm3] X_22485154_DEL [dm6]	AA	A	4.120e^-4	1	INTRON Cp110
2R	7512881	2R_7512881_SNP [dm3] 2R_11625376_SNP [dm6]	T	A	4.121e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9064683	3R_9064683_SNP [dm3] 3R_13238961_SNP [dm6]	C	T	4.123e^-4	1	INTRON Ace
3L	16480161	3L_16480161_SNP [dm3] 3L_16487061_SNP [dm6]	T	C	4.129e^-4	1	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
2L	17603484	2L_17603484_SNP [dm3] 2L_17603484_SNP [dm6]	T	A	4.145e^-4	1	UTR_3_PRIME Sytalpha	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7512869	2R_7512869_DEL [dm3] 2R_11625364_DEL [dm6]	AAG	C	4.157e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3123931	2L_3123931_SNP [dm3] 2L_3123931_SNP [dm6]	A	C	4.158e^-4	1	INTRON toc
X	2828973	X_2828973_SNP [dm3] X_2934940_SNP [dm6]	A	G	4.172e^-4	1	UPSTREAM CG3592 INTRON kirre
2L	17036903	2L_17036903_SNP [dm3] 2L_17036903_SNP [dm6]	A	T	4.204e^-4	1	INTERGENIC
X	3289537	X_3289537_SNP [dm3] X_3395504_SNP [dm6]	T	C	4.212e^-4	1	INTRON CR44999 & 1 other
3R	819022	3R_819022_SNP [dm3] 3R_4993300_SNP [dm6]	G	C	4.219e^-4	1	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12982308	2L_12982308_SNP [dm3] 2L_12982308_SNP [dm6]	C	G	4.220e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4172279	X_4172279_SNP [dm3] X_4278246_SNP [dm6]	T	A	4.223e^-4	1	UPSTREAM CG15578 INTERGENIC
2L	10527805	2L_10527805_SNP [dm3] 2L_10527805_SNP [dm6]	A	T	4.228e^-4	1	STOP_GAINED Lip4	TF binding site BDTNP1_TFBS_dl
2R	7627394	2R_7627394_DEL [dm3] 2R_11739889_DEL [dm6]	AA	A	4.232e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6995991	2R_6995991_SNP [dm3] 2R_11108486_SNP [dm6]	A	T	4.244e^-4	1	INTRON luna
3R	17558784	3R_17558784_SNP [dm3] 3R_21733062_SNP [dm6]	A	C	4.244e^-4	1	INTERGENIC
2R	13496369	2R_13496369_SNP [dm3] 2R_17608864_SNP [dm6]	G	T	4.246e^-4	1	NON_SYNONYMOUS_CODING CG10936	TF binding site mE1_TFBS_sens
2L	1706089	2L_1706089_SNP [dm3] 2L_1706089_SNP [dm6]	C	A	4.246e^-4	1	SYNONYMOUS_CODING cpb	TF binding site mE1_TFBS_chinmo
2L	15273637	2L_15273637_SNP [dm3] 2L_15273637_SNP [dm6]	A	G	4.250e^-4	1	DOWNSTREAM UK114 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3300199	3R_3300199_SNP [dm3] 3R_7474477_SNP [dm6]	A	G	4.253e^-4	1	UPSTREAM CG1142 DOWNSTREAM snRNA:7SK INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13221353	X_13221353_DEL [dm3] X_13327320_DEL [dm6]	TT	T	4.259e^-4	1	INTRON IP3K2
2R	16219461	2R_16219461_DEL [dm3] 2R_20331956_DEL [dm6]	AA	A	4.259e^-4	1	INTERGENIC
3R	9891841	3R_9891841_SNP [dm3] 3R_14066119_SNP [dm6]	G	A	4.267e^-4	1	INTRON foxo
X	2690109	X_2690109_SNP [dm3] X_2796076_SNP [dm6]	A	C	4.273e^-4	1	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	5980840	2L_5980840_SNP [dm3] 2L_5980840_SNP [dm6]	A	T	4.273e^-4	1	UPSTREAM chic & 1 other INTRON chic	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
X	14923557	X_14923557_SNP [dm3] X_15029524_SNP [dm6]	T	A	4.276e^-4	1	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	2655752	2L_2655752_SNP [dm3] 2L_2655752_SNP [dm6]	A	G	4.279e^-4	1	SYNONYMOUS_CODING Prosbeta4R2 DOWNSTREAM Or23a
X	15538179	X_15538179_DEL [dm3] X_15644146_DEL [dm6]	GT	A	4.282e^-4	1	UPSTREAM CG8117 INTERGENIC
3R	26616561	3R_26616561_DEL [dm3] 3R_30790839_DEL [dm6]	GATAG	G	4.286e^-4	1	UTR_3_PRIME wts DOWNSTREAM mir-1013
X	2236924	X_2236924_SNP [dm3] X_2342891_SNP [dm6]	T	C	4.287e^-4	1	SYNONYMOUS_CODING phl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7322407	2R_7322407_SNP [dm3] 2R_11434902_SNP [dm6]	T	A	4.289e^-4	1	INTERGENIC
X	15501013	X_15501013_SNP [dm3] X_15606980_SNP [dm6]	G	A	4.293e^-4	1	SYNONYMOUS_CODING sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7889970	3L_7889970_SNP [dm3] 3L_7896870_SNP [dm6]	T	C	4.299e^-4	1	DOWNSTREAM eIF4E-5 INTRON pbl
3R	26029331	3R_26029331_INS [dm3] 3R_30203609_INS [dm6]	C	CGAACGG	4.305e^-4	1	UPSTREAM CG9743 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13640447	3L_13640447_SNP [dm3] 3L_13647347_SNP [dm6]	G	A	4.307e^-4	1	INTRON bru-3
3L	10707695	3L_10707695_SNP [dm3] 3L_10714595_SNP [dm6]	A	C	4.316e^-4	1	INTERGENIC
2R	14400996	2R_14400996_SNP [dm3] 2R_18513491_SNP [dm6]	A	G	4.318e^-4	1	INTERGENIC
3L	10707705	3L_10707705_INS [dm3] 3L_10714605_INS [dm6]	C	CCTTTTATC	4.334e^-4	1	INTERGENIC
3R	9114063	3R_9114063_SNP [dm3] 3R_13288341_SNP [dm6]	A	C	4.334e^-4	1	INTRON CG15887	TF binding site mE1_TFBS_inv
X	3289638	X_3289638_SNP [dm3] X_3395605_SNP [dm6]	T	C	4.345e^-4	1	INTRON CR44999 & 1 other
2R	9414724	2R_9414724_INS [dm3] 2R_13527219_INS [dm6]	T	TT	4.352e^-4	1	DOWNSTREAM CG13332 INTRON Vmat
2L	1140510	2L_1140510_SNP [dm3] 2L_1140510_SNP [dm6]	A	T	4.353e^-4	1	UTR_3_PRIME CG4577
3R	6922039	3R_6922039_SNP [dm3] 3R_11096317_SNP [dm6]	A	G	4.355e^-4	1	INTERGENIC
3R	15280107	3R_15280107_DEL [dm3] 3R_19454385_DEL [dm6]	TC	T	4.357e^-4	1	INTRON CG31221
2L	19497692	2L_19497692_INS [dm3] 2L_19497692_INS [dm6]	A	AA	4.371e^-4	1	UTR_3_PRIME swm UPSTREAM Top3alpha	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16520406	2L_16520406_SNP [dm3] 2L_16520406_SNP [dm6]	T	C	4.372e^-4	1	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	6894986	2R_6894986_SNP [dm3] 2R_11007481_SNP [dm6]	C	A	4.373e^-4	1	INTRON luna
3R	15442774	3R_15442774_SNP [dm3] 3R_19617052_SNP [dm6]	C	A	4.378e^-4	1	INTRON CG6231
3R	9133450	3R_9133450_SNP [dm3] 3R_13307728_SNP [dm6]	G	T	4.384e^-4	1	INTRON CG32473
3L	10707673	3L_10707673_INS [dm3] 3L_10714573_INS [dm6]	A	GC	4.388e^-4	1	INTERGENIC
2R	15561164	2R_15561164_SNP [dm3] 2R_19673659_SNP [dm6]	A	G	4.392e^-4	1	DOWNSTREAM isopeptidase-T-3 INTERGENIC	TF binding site mE1_TFBS_kn
3L	7475488	3L_7475488_SNP [dm3] 3L_7482388_SNP [dm6]	A	T	4.398e^-4	1	INTERGENIC
3R	20443452	3R_20443452_SNP [dm3] 3R_24617730_SNP [dm6]	T	A	4.398e^-4	1	NON_SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9719680	3R_9719680_SNP [dm3] 3R_13893958_SNP [dm6]	T	C	4.399e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	18190065	3L_18190065_SNP [dm3] 3L_18196965_SNP [dm6]	T	C	4.402e^-4	1	DOWNSTREAM CR45234 INTERGENIC
X	288118	X_288118_INS [dm3] X_394085_INS [dm6]	A	AA	4.404e^-4	1	UPSTREAM CR44753 INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	11669382	3L_11669382_SNP [dm3] 3L_11676282_SNP [dm6]	C	A	4.407e^-4	1	INTRON CG32085
2R	12224677	2R_12224677_SNP [dm3] 2R_16337172_SNP [dm6]	A	G	4.408e^-4	1	UPSTREAM Vha44 INTRON Hmgs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	19776764	X_19776764_SNP [dm3] X_19882731_SNP [dm6]	C	G	4.410e^-4	1	INTRON Hers	TF binding site BDTNP1_TFBS_da
X	7782239	X_7782239_SNP [dm3] X_7888206_SNP [dm6]	G	T	4.411e^-4	1	SYNONYMOUS_CODING CG10932 DOWNSTREAM Nek2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13621949	2L_13621949_SNP [dm3] 2L_13621949_SNP [dm6]	A	T	4.416e^-4	1	INTRON kuz
2L	2001655	2L_2001655_SNP [dm3] 2L_2001655_SNP [dm6]	G	A	4.433e^-4	1	INTRON CG33543 EXON CR43464
2L	3115776	2L_3115776_SNP [dm3] 2L_3115776_SNP [dm6]	A	T	4.433e^-4	1	INTRON toc
3R	23890630	3R_23890630_SNP [dm3] 3R_28064908_SNP [dm6]	G	C	4.443e^-4	1	INTRON CG34362
X	16611238	X_16611238_SNP [dm3] X_16717205_SNP [dm6]	C	A	4.444e^-4	1	INTRON CG34325
X	8128134	X_8128134_SNP [dm3] X_8234101_SNP [dm6]	T	G	4.451e^-4	1	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	25561996	3R_25561996_SNP [dm3] 3R_29736274_SNP [dm6]	C	G	4.456e^-4	1	UPSTREAM CG7598 DOWNSTREAM Kul INTRON CG7601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	10112398	2R_10112398_SNP [dm3] 2R_14224893_SNP [dm6]	A	G	4.464e^-4	1	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9012910	X_9012910_SNP [dm3] X_9118877_SNP [dm6]	G	C	4.465e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15918512	3L_15918512_SNP [dm3] 3L_15925412_SNP [dm6]	T	C	4.470e^-4	1	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11683281	2R_11683281_SNP [dm3] 2R_15795776_SNP [dm6]	T	C	4.475e^-4	1	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	6294430	3L_6294430_SNP [dm3] 3L_6301330_SNP [dm6]	T	G	4.482e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16712998	2L_16712998_SNP [dm3] 2L_16712998_SNP [dm6]	C	A	4.482e^-4	1	INTRON CG31808
3L	13452844	3L_13452844_SNP [dm3] 3L_13459744_SNP [dm6]	A	C	4.490e^-4	1	INTRON CG10738
2L	2914785	2L_2914785_SNP [dm3] 2L_2914785_SNP [dm6]	C	T	4.491e^-4	1	INTRON lilli
2R	3880680	2R_3880680_SNP [dm3] 2R_7993175_SNP [dm6]	C	A	4.509e^-4	1	UPSTREAM CR44272 DOWNSTREAM Dic3 INTERGENIC
2R	3253776	2R_3253776_SNP [dm3] 2R_7366271_SNP [dm6]	C	A	4.511e^-4	1	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7235416	3R_7235416_SNP [dm3] 3R_11409694_SNP [dm6]	C	T	4.517e^-4	1	SYNONYMOUS_CODING mgr UPSTREAM Irbp DOWNSTREAM mRpL40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	3990300	2R_3990300_DEL [dm3] 2R_8102795_DEL [dm6]	CAGA	C	4.519e^-4	1	UTR_3_PRIME Cul4 DOWNSTREAM CG11210
3R	7234695	3R_7234695_SNP [dm3] 3R_11408973_SNP [dm6]	T	C	4.523e^-4	1	UTR_3_PRIME mgr DOWNSTREAM mRpL40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25264381	3R_25264381_SNP [dm3] 3R_29438659_SNP [dm6]	T	C	4.523e^-4	1	INTRON Ptp99A
2L	15466133	2L_15466133_SNP [dm3] 2L_15466133_SNP [dm6]	C	A	4.527e^-4	1	INTERGENIC
3R	17359510	3R_17359510_SNP [dm3] 3R_21533788_SNP [dm6]	A	G	4.555e^-4	1	UPSTREAM CR43372 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	4539584	X_4539584_DEL [dm3] X_4645551_DEL [dm6]	ACAAAA	A	4.556e^-4	1	UTR_3_PRIME HLH4C UPSTREAM CG3062	TF binding site mE1_TFBS_chinmo
3R	26020151	3R_26020151_SNP [dm3] 3R_30194429_SNP [dm6]	C	G	4.558e^-4	1	DOWNSTREAM CG15531 INTERGENIC
3L	10268866	3L_10268866_SNP [dm3] 3L_10275766_SNP [dm6]	T	G	4.559e^-4	1	INTERGENIC
3R	8682574	3R_8682574_SNP [dm3] 3R_12856852_SNP [dm6]	C	G	4.560e^-4	1	INTRON CG10126
3R	25566162	3R_25566162_DEL [dm3] 3R_29740440_DEL [dm6]	TCAGTCC	T	4.562e^-4	1	INTRON CG1969	TF binding site BDTNP1_TFBS_dl
3L	8660124	3L_8660124_SNP [dm3] 3L_8667024_SNP [dm6]	G	T	4.574e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14119993	2R_14119993_SNP [dm3] 2R_18232488_SNP [dm6]	T	A	4.576e^-4	1	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	12751137	X_12751137_SNP [dm3] X_12857104_SNP [dm6]	A	G	4.591e^-4	1	SYNONYMOUS_CODING CG4661 INTRON Pde9
2R	19841382	2R_19841382_SNP [dm3] 2R_23953859_SNP [dm6]	G	T	4.594e^-4	1	SYNONYMOUS_CODING CG3803 UPSTREAM thoc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	7579234	X_7579234_SNP [dm3] X_7685201_SNP [dm6]	T	C	4.597e^-4	1	UTR_3_PRIME CHES-1-like
2L	17027745	2L_17027745_SNP [dm3] 2L_17027745_SNP [dm6]	C	A	4.602e^-4	1	INTERGENIC
3L	9593495	3L_9593495_SNP [dm3] 3L_9600395_SNP [dm6]	T	G	4.612e^-4	1	DOWNSTREAM CG3088 & 1 other INTERGENIC
2R	6997082	2R_6997082_SNP [dm3] 2R_11109577_SNP [dm6]	A	C	4.617e^-4	1	INTRON luna
2R	11682780	2R_11682780_SNP [dm3] 2R_15795275_SNP [dm6]	G	A	4.621e^-4	1	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1863691	X_1863691_INS [dm3] X_1969658_INS [dm6]	G	GGCGGACAG	4.622e^-4	1	INTRON Hr4
3R	813300	3R_813300_SNP [dm3] 3R_4987578_SNP [dm6]	G	T	4.623e^-4	1	INTRON CG2022	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
2L	6175237	2L_6175237_SNP [dm3] 2L_6175237_SNP [dm6]	C	A	4.623e^-4	1	INTERGENIC
2R	3905436	2R_3905436_SNP [dm3] 2R_8017931_SNP [dm6]	G	T	4.630e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8289212	X_8289212_SNP [dm3] X_8395179_SNP [dm6]	T	G	4.632e^-4	1	INTERGENIC
X	16611232	X_16611232_SNP [dm3] X_16717199_SNP [dm6]	T	C	4.635e^-4	1	INTRON CG34325
2L	2575177	2L_2575177_SNP [dm3] 2L_2575177_SNP [dm6]	G	A	4.646e^-4	1	UPSTREAM Rad1 & 1 other DOWNSTREAM insv INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5933811	2R_5933811_SNP [dm3] 2R_10046306_SNP [dm6]	T	A	4.651e^-4	1	INTRON oys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	10707679	3L_10707679_SNP [dm3] 3L_10714579_SNP [dm6]	C	T	4.654e^-4	1	INTERGENIC
2R	20893152	2R_20893152_DEL [dm3] 2R_25005629_DEL [dm6]	GCTTTGGAG	G	4.655e^-4	1	INTRON zip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13467800	X_13467800_SNP [dm3] X_13573767_SNP [dm6]	G	A	4.661e^-4	1	INTRON Tango13
X	8283896	X_8283896_SNP [dm3] X_8389863_SNP [dm6]	C	T	4.664e^-4	1	DOWNSTREAM CG1387 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	2986669	3R_2986669_SNP [dm3] 3R_7160947_SNP [dm6]	C	G	4.667e^-4	1	INTERGENIC
3R	26020159	3R_26020159_SNP [dm3] 3R_30194437_SNP [dm6]	A	G	4.675e^-4	1	DOWNSTREAM CG15531 INTERGENIC
2R	7512878	2R_7512878_SNP [dm3] 2R_11625373_SNP [dm6]	A	T	4.683e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11236031	2L_11236031_SNP [dm3] 2L_11236031_SNP [dm6]	C	T	4.690e^-4	1	SYNONYMOUS_CODING ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12232615	2L_12232615_SNP [dm3] 2L_12232615_SNP [dm6]	A	C	4.706e^-4	1	INTRON aret
3L	13326437	3L_13326437_SNP [dm3] 3L_13333337_SNP [dm6]	C	T	4.708e^-4	1	INTERGENIC
2R	6996031	2R_6996031_SNP [dm3] 2R_11108526_SNP [dm6]	T	A	4.711e^-4	1	INTRON luna
2L	2516706	2L_2516706_SNP [dm3] 2L_2516706_SNP [dm6]	G	C	4.715e^-4	1	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15093973	2L_15093973_INS [dm3] 2L_15093973_INS [dm6]	G	ACAA	4.716e^-4	1	INTRON CG15270
3R	7904600	3R_7904600_SNP [dm3] 3R_12078878_SNP [dm6]	A	T	4.717e^-4	1	INTRON CG14741	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	20787402	3R_20787402_SNP [dm3] 3R_24961680_SNP [dm6]	T	A	4.717e^-4	1	INTERGENIC
2L	2796290	2L_2796290_DEL [dm3] 2L_2796290_DEL [dm6]	CG	C	4.733e^-4	1	UPSTREAM Syt1 INTRON Syt1
3R	18575897	3R_18575897_SNP [dm3] 3R_22750175_SNP [dm6]	T	C	4.744e^-4	1	SYNONYMOUS_CODING rumi UPSTREAM Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	16622973	2L_16622973_SNP [dm3] 2L_16622973_SNP [dm6]	G	A	4.750e^-4	1	INTRON CG42389
2L	16173853	2L_16173853_SNP [dm3] 2L_16173853_SNP [dm6]	C	A	4.757e^-4	1	INTRON Ca-alpha1D
2R	2599522	2R_2599522_SNP [dm3] 2R_6712017_SNP [dm6]	T	C	4.760e^-4	1	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13467712	X_13467712_SNP [dm3] X_13573679_SNP [dm6]	A	G	4.770e^-4	1	INTRON Tango13
2L	14544247	2L_14544247_INS [dm3] 2L_14544247_INS [dm6]	C	CTGAAGCC	4.787e^-4	1	INTERGENIC
2L	9311789	2L_9311789_SNP [dm3] 2L_9311789_SNP [dm6]	G	A	4.788e^-4	1	INTERGENIC
X	6780816	X_6780816_INS [dm3] X_6886783_INS [dm6]	C	CCATCCAC	4.796e^-4	1	INTERGENIC
X	16750660	X_16750660_DEL [dm3] X_16856627_DEL [dm6]	CACATTTAGTTAGCATAATT...	C	4.808e^-4	1	INTRON CG13003	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12082373	3R_12082373_SNP [dm3] 3R_16256651_SNP [dm6]	A	T	4.808e^-4	1	INTRON tara	TF binding site mE1_TFBS_cad mE1_TFBS_eve
3R	9068911	3R_9068911_DEL [dm3] 3R_13243189_DEL [dm6]	TGCACC	G	4.809e^-4	1	INTRON Ace
2L	16197146	2L_16197146_SNP [dm3] 2L_16197146_SNP [dm6]	G	A	4.827e^-4	1	UPSTREAM CR44735 INTERGENIC
2L	1963450	2L_1963450_SNP [dm3] 2L_1963450_SNP [dm6]	G	A	4.827e^-4	1	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	13467727	X_13467727_SNP [dm3] X_13573694_SNP [dm6]	A	G	4.839e^-4	1	INTRON Tango13
3L	7767350	3L_7767350_INS [dm3] 3L_7774250_INS [dm6]	A	AA	4.843e^-4	1	INTRON Clk	regulatory region REDfly_CRMs
X	665917	X_665917_SNP [dm3] X_771884_SNP [dm6]	A	G	4.843e^-4	1	INTRON fz3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9775237	2L_9775237_SNP [dm3] 2L_9775237_SNP [dm6]	G	A	4.852e^-4	1	UPSTREAM ppk11 INTERGENIC
3R	14879346	3R_14879346_SNP [dm3] 3R_19053624_SNP [dm6]	T	C	4.858e^-4	1	INTRON cdi
X	13467739	X_13467739_SNP [dm3] X_13573706_SNP [dm6]	A	T	4.867e^-4	1	INTRON Tango13
3L	3094818	3L_3094818_SNP [dm3] 3L_3094818_SNP [dm6]	A	T	4.881e^-4	1	NON_SYNONYMOUS_CODING Cht7 UPSTREAM tRNA:CR32288	TF binding site mE1_TFBS_cad
3R	3280831	3R_3280831_SNP [dm3] 3R_7455109_SNP [dm6]	A	G	4.895e^-4	1	INTERGENIC
3R	17629448	3R_17629448_SNP [dm3] 3R_21803726_SNP [dm6]	A	G	4.897e^-4	1	SYNONYMOUS_CODING CASK INTRON CASK	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5713189	2L_5713189_SNP [dm3] 2L_5713189_SNP [dm6]	C	T	4.898e^-4	1	SYNONYMOUS_CODING CG7236	TF binding site mE1_TFBS_chinmo
2L	3115768	2L_3115768_SNP [dm3] 2L_3115768_SNP [dm6]	A	T	4.904e^-4	1	INTRON toc
X	3431013	X_3431013_DEL [dm3] X_3536980_DEL [dm6]	CCACCAACCC	C	4.909e^-4	1	INTRON CG32791
2R	3060456	2R_3060456_SNP [dm3] 2R_7172951_SNP [dm6]	C	T	4.912e^-4	1	INTRON pk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25562656	3R_25562656_SNP [dm3] 3R_29736934_SNP [dm6]	A	T	4.919e^-4	1	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	15194818	3R_15194818_SNP [dm3] 3R_19369096_SNP [dm6]	T	A	4.920e^-4	1	UTR_3_PRIME Ino80
X	15326601	X_15326601_SNP [dm3] X_15432568_SNP [dm6]	C	T	4.926e^-4	1	INTRON Cngl
3L	10591593	3L_10591593_INS [dm3] 3L_10598493_INS [dm6]	T	TCCGACT	4.927e^-4	1	INTERGENIC
3L	10707686	3L_10707686_SNP [dm3] 3L_10714586_SNP [dm6]	G	T	4.931e^-4	1	INTERGENIC
3L	10707692	3L_10707692_SNP [dm3] 3L_10714592_SNP [dm6]	G	A	4.931e^-4	1	INTERGENIC
X	7782587	X_7782587_SNP [dm3] X_7888554_SNP [dm6]	T	C	4.933e^-4	1	SYNONYMOUS_CODING CG10932 DOWNSTREAM Nek2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9718801	3R_9718801_SNP [dm3] 3R_13893079_SNP [dm6]	T	C	4.952e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	20443437	3R_20443437_SNP [dm3] 3R_24617715_SNP [dm6]	G	C	4.955e^-4	1	SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15363241	2L_15363241_SNP [dm3] 2L_15363241_SNP [dm6]	C	G	4.962e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16275625	2L_16275625_SNP [dm3] 2L_16275625_SNP [dm6]	C	T	4.970e^-4	1	INTRON crp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	812399	3L_812399_SNP [dm3] 3L_812399_SNP [dm6]	C	T	4.975e^-4	1	UPSTREAM CR44537 INTERGENIC
3R	25609224	3R_25609224_SNP [dm3] 3R_29783502_SNP [dm6]	T	C	4.977e^-4	1	INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	15632816	3R_15632816_SNP [dm3] 3R_19807094_SNP [dm6]	A	C	4.987e^-4	1	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	3266261	3R_3266261_DEL [dm3] 3R_7440539_DEL [dm6]	ACAATAGAGCCATAACTTTA...	A	4.990e^-4	1	INTRON CG14598
3L	1669516	3L_1669516_INS [dm3] 3L_1669516_INS [dm6]	A	AA	4.996e^-4	1	UPSTREAM RpL23A DOWNSTREAM CG13930 INTRON RabX5	TF binding site mE1_TFBS_chinmo
2L	9274751	2L_9274751_SNP [dm3] 2L_9274751_SNP [dm6]	C	T	5.001e^-4	1	INTRON Ggamma30A
X	10787820	X_10787820_SNP [dm3] X_10893787_SNP [dm6]	G	A	5.003e^-4	1	DOWNSTREAM CR44524 & 1 other INTERGENIC
3R	938565	3R_938565_SNP [dm3] 3R_5112843_SNP [dm6]	C	G	5.007e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	17489351	3R_17489351_SNP [dm3] 3R_21663629_SNP [dm6]	T	C	5.017e^-4	1	UPSTREAM CG6353 & 1 other INTERGENIC
2L	7371635	2L_7371635_SNP [dm3] 2L_7371635_SNP [dm6]	C	A	5.027e^-4	1	INTRON Wnt10
3L	7475491	3L_7475491_INS [dm3] 3L_7482391_INS [dm6]	A	AA	5.035e^-4	1	INTERGENIC
X	6882593	X_6882593_SNP [dm3] X_6988560_SNP [dm6]	T	C	5.064e^-4	1	INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	1165493	X_1165493_SNP [dm3] X_1271460_SNP [dm6]	T	A	5.066e^-4	1	INTRON Atf3	TF binding site BDTNP1_TFBS_dl
2R	12763910	2R_12763910_SNP [dm3] 2R_16876405_SNP [dm6]	T	C	5.066e^-4	1	SYNONYMOUS_CODING CG8910
3R	3300210	3R_3300210_SNP [dm3] 3R_7474488_SNP [dm6]	T	A	5.067e^-4	1	UPSTREAM CG1142 DOWNSTREAM snRNA:7SK INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4767097	2L_4767097_SNP [dm3] 2L_4767097_SNP [dm6]	C	T	5.072e^-4	1	INTRON CG15630
X	21174399	X_21174399_SNP [dm3] X_21303372_SNP [dm6]	C	T	5.077e^-4	1	UPSTREAM CG1718 INTRON CG1718
3R	9902700	3R_9902700_SNP [dm3] 3R_14076978_SNP [dm6]	A	C	5.078e^-4	1	INTRON foxo
X	8292177	X_8292177_SNP [dm3] X_8398144_SNP [dm6]	A	G	5.080e^-4	1	UTR_5_PRIME CG15345 UPSTREAM CG10555	TF binding site BDTNP1_TFBS_dl
3R	8679849	3R_8679849_SNP [dm3] 3R_12854127_SNP [dm6]	G	A	5.101e^-4	1	INTERGENIC
3L	12309059	3L_12309059_SNP [dm3] 3L_12315959_SNP [dm6]	A	C	5.108e^-4	1	INTERGENIC
3R	25396591	3R_25396591_SNP [dm3] 3R_29570869_SNP [dm6]	G	A	5.137e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8472321	X_8472321_SNP [dm3] X_8578288_SNP [dm6]	A	G	5.137e^-4	1	INTRON CG12065
2L	9438762	2L_9438762_SNP [dm3] 2L_9438762_SNP [dm6]	G	C	5.147e^-4	1	INTRON numb
2L	13139003	2L_13139003_SNP [dm3] 2L_13139003_SNP [dm6]	C	A	5.149e^-4	1	INTERGENIC
3L	18480667	3L_18480667_SNP [dm3] 3L_18487567_SNP [dm6]	C	A	5.153e^-4	1	INTRON AstC-R2
3R	26029325	3R_26029325_SNP [dm3] 3R_30203603_SNP [dm6]	A	G	5.155e^-4	1	UPSTREAM CG9743 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7086518	2L_7086518_SNP [dm3] 2L_7086518_SNP [dm6]	C	G	5.164e^-4	1	INTERGENIC
3R	20343794	3R_20343794_SNP [dm3] 3R_24518072_SNP [dm6]	A	T	5.166e^-4	1	UTR_3_PRIME CG13617 UPSTREAM Pp1alpha-96A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20343803	3R_20343803_SNP [dm3] 3R_24518081_SNP [dm6]	C	T	5.166e^-4	1	UTR_3_PRIME CG13617 UPSTREAM Pp1alpha-96A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4426746	X_4426746_SNP [dm3] X_4532713_SNP [dm6]	A	G	5.173e^-4	1	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_chinmo
3L	7712646	3L_7712646_SNP [dm3] 3L_7719546_SNP [dm6]	G	A	5.189e^-4	1	INTRON CG32373 & 1 other
2L	6243935	2L_6243935_SNP [dm3] 2L_6243935_SNP [dm6]	A	T	5.191e^-4	1	INTERGENIC
3R	26541185	3R_26541185_SNP [dm3] 3R_30715463_SNP [dm6]	T	C	5.197e^-4	1	INTERGENIC
2R	10507371	2R_10507371_SNP [dm3] 2R_14619866_SNP [dm6]	A	G	5.202e^-4	1	SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3250686	3R_3250686_SNP [dm3] 3R_7424964_SNP [dm6]	T	C	5.211e^-4	1	INTERGENIC
2L	5572842	2L_5572842_SNP [dm3] 2L_5572842_SNP [dm6]	C	T	5.227e^-4	1	INTERGENIC
3R	18455103	3R_18455103_SNP [dm3] 3R_22629381_SNP [dm6]	T	G	5.227e^-4	1	UPSTREAM CR43474 DOWNSTREAM CR43475 INTRON loco	regulatory region REDfly_CRMs
2R	6996017	2R_6996017_SNP [dm3] 2R_11108512_SNP [dm6]	A	T	5.244e^-4	1	INTRON luna
2R	16748251	2R_16748251_SNP [dm3] 2R_20860746_SNP [dm6]	C	A	5.257e^-4	1	INTERGENIC
2R	6995715	2R_6995715_SNP [dm3] 2R_11108210_SNP [dm6]	G	C	5.265e^-4	1	INTRON luna	TF binding site mE1_TFBS_Trl
2R	3986327	2R_3986327_SNP [dm3] 2R_8098822_SNP [dm6]	T	G	5.270e^-4	1	UTR_5_PRIME CG11210 UPSTREAM CG8712	TF binding site BDTNP1_TFBS_dl
2R	10268483	2R_10268483_SNP [dm3] 2R_14380978_SNP [dm6]	T	C	5.275e^-4	1	INTRON Dh44-R1
2L	12982236	2L_12982236_INS [dm3] 2L_12982236_INS [dm6]	A	AA	5.278e^-4	1	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9099986	3R_9099986_DEL [dm3] 3R_13274264_DEL [dm6]	TGGTTAGGTACTTTAAGAGT...	T	5.286e^-4	1	INTERGENIC
X	4539562	X_4539562_SNP [dm3] X_4645529_SNP [dm6]	C	A	5.292e^-4	1	UTR_3_PRIME HLH4C UPSTREAM CG3062	TF binding site mE1_TFBS_chinmo
2R	6062748	2R_6062748_SNP [dm3] 2R_10175243_SNP [dm6]	T	C	5.293e^-4	1	INTRON KCNQ
X	4297619	X_4297619_SNP [dm3] X_4403586_SNP [dm6]	G	A	5.301e^-4	1	INTRON CR32773
X	7782512	X_7782512_SNP [dm3] X_7888479_SNP [dm6]	A	G	5.323e^-4	1	SYNONYMOUS_CODING CG10932 DOWNSTREAM Nek2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11187354	3L_11187354_SNP [dm3] 3L_11194254_SNP [dm6]	G	C	5.338e^-4	1	INTRON GlcAT-P
2R	8856210	2R_8856210_SNP [dm3] 2R_12968705_SNP [dm6]	G	T	5.340e^-4	1	SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1563289	2L_1563289_INS [dm3] 2L_1563289_INS [dm6]	T	TACAT	5.351e^-4	1	INTRON haf	TF binding site mE1_TFBS_inv
3L	21402421	3L_21402421_SNP [dm3] 3L_21409321_SNP [dm6]	T	C	5.355e^-4	1	INTRON rgn
3L	14603658	3L_14603658_SNP [dm3] 3L_14610558_SNP [dm6]	C	T	5.357e^-4	1	INTERGENIC
3R	25262103	3R_25262103_SNP [dm3] 3R_29436381_SNP [dm6]	C	A	5.358e^-4	1	INTRON Ptp99A
3R	9145138	3R_9145138_SNP [dm3] 3R_13319416_SNP [dm6]	T	G	5.362e^-4	1	UPSTREAM CG45080 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	21277876	3R_21277876_INS [dm3] 3R_25452154_INS [dm6]	T	TT	5.373e^-4	1	INTRON Fur1
X	7645234	X_7645234_SNP [dm3] X_7751201_SNP [dm6]	A	C	5.376e^-4	1	INTERGENIC
3L	18138635	3L_18138635_SNP [dm3] 3L_18145535_SNP [dm6]	C	T	5.388e^-4	1	DOWNSTREAM gk INTERGENIC
X	15138162	X_15138162_SNP [dm3] X_15244129_SNP [dm6]	A	T	5.389e^-4	1	NON_SYNONYMOUS_CODING PPYR1	TF binding site mE1_TFBS_HSA
2L	2831223	2L_2831223_INS [dm3] 2L_2831223_INS [dm6]	T	TG	5.419e^-4	1	UPSTREAM Duox INTERGENIC	TF binding site mE1_TFBS_Trl
2R	14400975	2R_14400975_SNP [dm3] 2R_18513470_SNP [dm6]	G	A	5.423e^-4	1	INTERGENIC
2R	8838010	2R_8838010_SNP [dm3] 2R_12950505_SNP [dm6]	G	A	5.426e^-4	1	SYNONYMOUS_CODING CG44250 UPSTREAM CG44251 INTRON CG44251	TF binding site mE1_TFBS_cad
X	4498102	X_4498102_INS [dm3] X_4604069_INS [dm6]	T	TT	5.433e^-4	1	INTRON CR32773
2R	7512854	2R_7512854_DEL [dm3] 2R_11625349_DEL [dm6]	AGT	A	5.433e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12982232	2L_12982232_SNP [dm3] 2L_12982232_SNP [dm6]	G	A	5.434e^-4	1	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4170950	2L_4170950_SNP [dm3] 2L_4170950_SNP [dm6]	G	A	5.438e^-4	1	INTERGENIC
2L	9877431	2L_9877431_SNP [dm3] 2L_9877431_SNP [dm6]	C	A	5.440e^-4	1	UTR_5_PRIME nAChRalpha6 INTRON nAChRalpha6
3L	10707751	3L_10707751_SNP [dm3] 3L_10714651_SNP [dm6]	C	G	5.452e^-4	1	INTERGENIC
2L	16520563	2L_16520563_SNP [dm3] 2L_16520563_SNP [dm6]	G	T	5.455e^-4	1	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	18455557	3R_18455557_SNP [dm3] 3R_22629835_SNP [dm6]	G	A	5.461e^-4	1	SYNONYMOUS_CODING loco DOWNSTREAM CR43475 INTRON loco EXON CR43474	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25561984	3R_25561984_SNP [dm3] 3R_29736262_SNP [dm6]	C	A	5.481e^-4	1	UPSTREAM CG7598 DOWNSTREAM Kul INTRON CG7601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	1596018	3R_1596018_SNP [dm3] 3R_5770296_SNP [dm6]	T	A	5.486e^-4	1	INTRON CG2082
3L	22122017	3L_22122017_SNP [dm3] 3L_22128917_SNP [dm6]	C	T	5.492e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25361935	3R_25361935_SNP [dm3] 3R_29536213_SNP [dm6]	C	T	5.504e^-4	1	DOWNSTREAM CR43613 INTERGENIC
X	13432190	X_13432190_SNP [dm3] X_13538157_SNP [dm6]	C	T	5.516e^-4	1	INTERGENIC
2R	7512774	2R_7512774_SNP [dm3] 2R_11625269_SNP [dm6]	G	A	5.522e^-4	1	UTR_5_PRIME CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1193293	2L_1193293_SNP [dm3] 2L_1193293_SNP [dm6]	C	T	5.522e^-4	1	INTRON CG5001
2R	6995724	2R_6995724_SNP [dm3] 2R_11108219_SNP [dm6]	T	C	5.523e^-4	1	INTRON luna	TF binding site mE1_TFBS_Trl
2L	1325755	2L_1325755_SNP [dm3] 2L_1325755_SNP [dm6]	T	C	5.524e^-4	1	INTERGENIC
3R	5356875	3R_5356875_SNP [dm3] 3R_9531153_SNP [dm6]	T	C	5.543e^-4	1	NON_SYNONYMOUS_CODING by	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14279577	2L_14279577_SNP [dm3] 2L_14279577_SNP [dm6]	C	G	5.546e^-4	1	INTRON wb
2R	18942409	2R_18942409_SNP [dm3] 2R_23054886_SNP [dm6]	G	T	5.551e^-4	1	UPSTREAM CG44252 INTERGENIC
3R	25551510	3R_25551510_SNP [dm3] 3R_29725788_SNP [dm6]	G	A	5.553e^-4	1	UPSTREAM Kul & 1 other DOWNSTREAM CG18731 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10571834	3L_10571834_SNP [dm3] 3L_10578734_SNP [dm6]	A	G	5.559e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7440875	3L_7440875_SNP [dm3] 3L_7447775_SNP [dm6]	G	A	5.565e^-4	1	INTRON CG42458	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26080629	3R_26080629_SNP [dm3] 3R_30254907_SNP [dm6]	C	A	5.568e^-4	1	DOWNSTREAM CG18404 INTERGENIC
X	2690538	X_2690538_SNP [dm3] X_2796505_SNP [dm6]	C	G	5.571e^-4	1	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12982221	2L_12982221_SNP [dm3] 2L_12982221_SNP [dm6]	G	T	5.571e^-4	1	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3830862	2R_3830862_SNP [dm3] 2R_7943357_SNP [dm6]	G	A	5.598e^-4	1	UPSTREAM CG34430 INTRON CG14764
3R	2786205	3R_2786205_SNP [dm3] 3R_6960483_SNP [dm6]	T	G	5.606e^-4	1	INTRON Antp	TF binding site BDTNP1_TFBS_dl
X	12585650	X_12585650_SNP [dm3] X_12691617_SNP [dm6]	T	G	5.609e^-4	1	NON_SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13640182	2R_13640182_SNP [dm3] 2R_17752677_SNP [dm6]	T	C	5.610e^-4	1	DOWNSTREAM CG6385 INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18190066	3L_18190066_SNP [dm3] 3L_18196966_SNP [dm6]	G	T	5.650e^-4	1	DOWNSTREAM CR45234 INTERGENIC
3R	9114705	3R_9114705_SNP [dm3] 3R_13288983_SNP [dm6]	C	T	5.651e^-4	1	UPSTREAM CG15887 INTERGENIC
2L	15886344	2L_15886344_SNP [dm3] 2L_15886344_SNP [dm6]	A	G	5.652e^-4	1	INTERGENIC
X	2690154	X_2690154_SNP [dm3] X_2796121_SNP [dm6]	A	G	5.655e^-4	1	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	6177000	2L_6177000_SNP [dm3] 2L_6177000_SNP [dm6]	A	G	5.658e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26080662	3R_26080662_SNP [dm3] 3R_30254940_SNP [dm6]	C	G	5.659e^-4	1	DOWNSTREAM CG18404 INTERGENIC
2L	1886023	2L_1886023_SNP [dm3] 2L_1886023_SNP [dm6]	A	G	5.660e^-4	1	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11493758	2L_11493758_DEL [dm3] 2L_11493758_DEL [dm6]	GG	G	5.663e^-4	1	INTERGENIC
2L	2266067	2L_2266067_SNP [dm3] 2L_2266067_SNP [dm6]	G	A	5.668e^-4	1	UPSTREAM CG34049 INTERGENIC
3L	4147173	3L_4147173_SNP [dm3] 3L_4147173_SNP [dm6]	A	C	5.682e^-4	1	INTERGENIC
2R	17308253	2R_17308253_SNP [dm3] 2R_21420748_SNP [dm6]	A	C	5.705e^-4	1	INTRON Sdc
3R	26028088	3R_26028088_SNP [dm3] 3R_30202366_SNP [dm6]	G	T	5.710e^-4	1	INTRON CG9743	TF binding site mE1_TFBS_inv
3L	13589597	3L_13589597_SNP [dm3] 3L_13596497_SNP [dm6]	C	A	5.733e^-4	1	INTRON bru-3
3L	3362268	3L_3362268_SNP [dm3] 3L_3362268_SNP [dm6]	T	G	5.734e^-4	1	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3R	12793213	3R_12793213_SNP [dm3] 3R_16967491_SNP [dm6]	T	C	5.735e^-4	1	INTRON Abd-B	TF binding site mE1_TFBS_cad
2R	14156207	2R_14156207_INS [dm3] 2R_18268702_INS [dm6]	T	GTTCA	5.740e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1296871	2L_1296871_DEL [dm3] 2L_1296871_DEL [dm6]	GAC	G	5.748e^-4	1	DOWNSTREAM robo3 INTERGENIC
3L	13515462	3L_13515462_DEL [dm3] 3L_13522362_DEL [dm6]	TTGTG	T	5.749e^-4	1	UTR_3_PRIME bru-3
2L	11182562	2L_11182562_SNP [dm3] 2L_11182562_SNP [dm6]	C	T	5.754e^-4	1	INTRON Ca-beta
2L	16857288	2L_16857288_SNP [dm3] 2L_16857288_SNP [dm6]	G	T	5.761e^-4	1	INTRON CG31809	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1062182	2L_1062182_SNP [dm3] 2L_1062182_SNP [dm6]	C	A	5.761e^-4	1	UTR_5_PRIME S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15216036	3L_15216036_SNP [dm3] 3L_15222936_SNP [dm6]	A	C	5.779e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8716682	2R_8716682_SNP [dm3] 2R_12829177_SNP [dm6]	G	T	5.783e^-4	1	INTERGENIC
X	7783675	X_7783675_SNP [dm3] X_7889642_SNP [dm6]	A	C	5.789e^-4	1	NON_SYNONYMOUS_CODING Nek2 UPSTREAM CG10932	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	18068157	3L_18068157_SNP [dm3] 3L_18075057_SNP [dm6]	C	T	5.810e^-4	1	EXON CR45391
3L	19143529	3L_19143529_SNP [dm3] 3L_19150429_SNP [dm6]	A	T	5.816e^-4	1	INTRON fz2
3L	10707663	3L_10707663_MNP [dm3] 3L_10714563_MNP [dm6]	ATG	GCT	5.818e^-4	1	INTERGENIC
2L	16450200	2L_16450200_SNP [dm3] 2L_16450200_SNP [dm6]	C	T	5.830e^-4	1	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
X	7782659	X_7782659_SNP [dm3] X_7888626_SNP [dm6]	A	C	5.844e^-4	1	NON_SYNONYMOUS_CODING CG10932 DOWNSTREAM Nek2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9514921	3L_9514921_SNP [dm3] 3L_9521821_SNP [dm6]	A	G	5.851e^-4	1	INTRON CG33700
X	3945774	X_3945774_SNP [dm3] X_4051741_SNP [dm6]	C	T	5.861e^-4	1	INTERGENIC
3L	9223256	3L_9223256_SNP [dm3] 3L_9230156_SNP [dm6]	C	A	5.878e^-4	1	INTERGENIC
3R	18795449	3R_18795449_SNP [dm3] 3R_22969727_SNP [dm6]	C	G	5.881e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2575056	2L_2575056_SNP [dm3] 2L_2575056_SNP [dm6]	C	A	5.882e^-4	1	UPSTREAM Rad1 & 1 other DOWNSTREAM insv INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17405209	2R_17405209_SNP [dm3] 2R_21517704_SNP [dm6]	C	T	5.883e^-4	1	SYNONYMOUS_CODING CG10494 DOWNSTREAM MESK2	TF binding site mE1_TFBS_HSA
2L	4633266	2L_4633266_SNP [dm3] 2L_4633266_SNP [dm6]	C	T	5.887e^-4	1	DOWNSTREAM CR45452 INTERGENIC	TF binding site mE1_TFBS_inv
X	14569118	X_14569118_SNP [dm3] X_14675085_SNP [dm6]	A	C	5.889e^-4	1	INTERGENIC
3R	5214319	3R_5214319_DEL [dm3] 3R_9388597_DEL [dm6]	TT	T	5.896e^-4	1	INTRON FER
2R	10141670	2R_10141670_SNP [dm3] 2R_14254165_SNP [dm6]	A	G	5.902e^-4	1	SYNONYMOUS_CODING Hsc70-5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15231858	2R_15231858_SNP [dm3] 2R_19344353_SNP [dm6]	T	C	5.903e^-4	1	UTR_3_PRIME CG9975 INTRON Rgk1
2L	916240	2L_916240_SNP [dm3] 2L_916240_SNP [dm6]	T	C	5.904e^-4	1	INTRON GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	16515861	X_16515861_SNP [dm3] X_16621828_SNP [dm6]	G	A	5.922e^-4	1	UPSTREAM CG9782 INTERGENIC
3R	26616439	3R_26616439_SNP [dm3] 3R_30790717_SNP [dm6]	T	G	5.926e^-4	1	UTR_3_PRIME wts DOWNSTREAM mir-1013
X	21883060	X_21883060_SNP [dm3] X_22481224_SNP [dm6]	G	A	5.929e^-4	1	UPSTREAM Cp110 INTRON CG12576	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	4514753	2R_4514753_SNP [dm3] 2R_8627248_SNP [dm6]	G	A	5.934e^-4	1	SYNONYMOUS_CODING beta3GalTII UPSTREAM CG14749	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	545221	3L_545221_SNP [dm3] 3L_545221_SNP [dm6]	T	C	5.934e^-4	1	UPSTREAM hipk INTRON hipk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12383510	3L_12383510_SNP [dm3] 3L_12390410_SNP [dm6]	A	G	5.953e^-4	1	INTRON Ncc69
3L	15860914	3L_15860914_SNP [dm3] 3L_15867814_SNP [dm6]	G	A	5.960e^-4	1	INTRON pHCl
X	17202035	X_17202035_SNP [dm3] X_17308002_SNP [dm6]	A	C	5.962e^-4	1	INTERGENIC
2R	14156202	2R_14156202_SNP [dm3] 2R_18268697_SNP [dm6]	A	T	5.969e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4633254	2L_4633254_SNP [dm3] 2L_4633254_SNP [dm6]	T	C	5.970e^-4	1	DOWNSTREAM CR45452 INTERGENIC	TF binding site mE1_TFBS_inv
X	8302697	X_8302697_SNP [dm3] X_8408664_SNP [dm6]	C	G	5.981e^-4	1	UTR_3_PRIME lawc UPSTREAM Trf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17020971	2L_17020971_SNP [dm3] 2L_17020971_SNP [dm6]	C	A	5.982e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14399740	2R_14399740_SNP [dm3] 2R_18512235_SNP [dm6]	A	C	5.985e^-4	1	INTERGENIC
3R	12309579	3R_12309579_SNP [dm3] 3R_16483857_SNP [dm6]	G	A	5.986e^-4	1	DOWNSTREAM Cad89D INTRON Der-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12054190	3L_12054190_SNP [dm3] 3L_12061090_SNP [dm6]	C	G	5.989e^-4	1	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2164898	2L_2164898_SNP [dm3] 2L_2164898_SNP [dm6]	C	T	5.997e^-4	1	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	3236904	3R_3236904_SNP [dm3] 3R_7411182_SNP [dm6]	G	A	6.001e^-4	1	INTERGENIC
2R	2856649	2R_2856649_SNP [dm3] 2R_6969144_SNP [dm6]	G	C	6.014e^-4	1	INTRON mim & 1 other
3R	6659518	3R_6659518_SNP [dm3] 3R_10833796_SNP [dm6]	A	C	6.021e^-4	1	INTRON Cad86C
2R	1927406	2R_1927406_SNP [dm3] 2R_6039901_SNP [dm6]	C	T	6.024e^-4	1	INTRON CG14591	TF binding site BDTNP1_TFBS_dl
3L	18290665	3L_18290665_SNP [dm3] 3L_18297565_SNP [dm6]	G	A	6.025e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	8154068	2L_8154068_DEL [dm3] 2L_8154068_DEL [dm6]	AGAAGCTCTAATCAAGCTC...	G	6.025e^-4	1	INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20107408	X_20107408_SNP [dm3] X_20236334_SNP [dm6]	T	A	6.029e^-4	1	UTR_5_PRIME sw UPSTREAM sw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	27415780	3R_27415780_SNP [dm3] 3R_31590058_SNP [dm6]	C	G	6.036e^-4	1	SYNONYMOUS_CODING CG1635 UPSTREAM CG1638 EXON CR45190
2L	4397277	2L_4397277_SNP [dm3] 2L_4397277_SNP [dm6]	A	C	6.052e^-4	1	SYNONYMOUS_CODING l_2_k05819
X	21162186	X_21162186_SNP [dm3] X_21291159_SNP [dm6]	A	G	6.054e^-4	1	SYNONYMOUS_CODING CG1494
X	16868184	X_16868184_SNP [dm3] X_16974151_SNP [dm6]	T	C	6.064e^-4	1	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	2609085	3R_2609085_SNP [dm3] 3R_6783363_SNP [dm6]	A	T	6.079e^-4	1	INTERGENIC
3R	25171826	3R_25171826_SNP [dm3] 3R_29346104_SNP [dm6]	G	T	6.087e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12982242	2L_12982242_SNP [dm3] 2L_12982242_SNP [dm6]	T	G	6.088e^-4	1	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1150589	X_1150589_SNP [dm3] X_1256556_SNP [dm6]	G	T	6.091e^-4	1	INTRON Atf3
3R	10692703	3R_10692703_SNP [dm3] 3R_14866981_SNP [dm6]	C	A	6.104e^-4	1	INTRON btsz
2L	12555612	2L_12555612_SNP [dm3] 2L_12555612_SNP [dm6]	C	A	6.118e^-4	1	INTERGENIC
X	19754126	X_19754126_SNP [dm3] X_19860093_SNP [dm6]	C	A	6.122e^-4	1	NON_SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618 DOWNSTREAM Nup205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15024827	2L_15024827_SNP [dm3] 2L_15024827_SNP [dm6]	C	A	6.130e^-4	1	INTRON GABA-B-R1
2L	18251791	2L_18251791_SNP [dm3] 2L_18251791_SNP [dm6]	T	C	6.142e^-4	1	UTR_3_PRIME CG43406 INTRON CG42750 & 1 other
3R	2350909	3R_2350909_SNP [dm3] 3R_6525187_SNP [dm6]	A	T	6.144e^-4	1	INTERGENIC
2L	1563299	2L_1563299_SNP [dm3] 2L_1563299_SNP [dm6]	G	A	6.153e^-4	1	INTRON haf	TF binding site mE1_TFBS_inv
3L	8287755	3L_8287755_SNP [dm3] 3L_8294655_SNP [dm6]	A	C	6.154e^-4	1	INTRON CG7201
2L	10904639	2L_10904639_SNP [dm3] 2L_10904639_SNP [dm6]	G	T	6.169e^-4	1	UPSTREAM CR45724 INTERGENIC
2L	6243510	2L_6243510_SNP [dm3] 2L_6243510_SNP [dm6]	G	T	6.176e^-4	1	INTERGENIC
X	12751230	X_12751230_SNP [dm3] X_12857197_SNP [dm6]	G	A	6.200e^-4	1	SYNONYMOUS_CODING CG4661 INTRON Pde9
2R	17547192	2R_17547192_SNP [dm3] 2R_21659687_SNP [dm6]	T	C	6.205e^-4	1	SYNONYMOUS_CODING Rae1 DOWNSTREAM CG10320	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_ttk
2L	12529090	2L_12529090_SNP [dm3] 2L_12529090_SNP [dm6]	A	G	6.212e^-4	1	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

Cuticul_NI_54 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results