DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.078e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	1.241e-10

Kruskal-Wallis test

Covariate	χ²	p-value	Significance

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2042 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	13885304	3R_13885304_SNP [dm3] 3R_18059582_SNP [dm6]	C	T	2.068e^-7	0.353	INTERGENIC
2L	15881902	2L_15881902_SNP [dm3] 2L_15881902_SNP [dm6]	A	G	8.009e^-7	0.353	DOWNSTREAM CG44475 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	15881899	2L_15881899_SNP [dm3] 2L_15881899_SNP [dm6]	T	A	9.348e^-7	0.353	DOWNSTREAM CG44475 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	8866515	3L_8866515_SNP [dm3] 3L_8873415_SNP [dm6]	A	G	9.361e^-7	0.353	INTRON dally	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8092915	2R_8092915_SNP [dm3] 2R_12205410_SNP [dm6]	C	G	9.417e^-7	0.353	UPSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	1.217e^-6	0.38	INTRON salm
2L	8563700	2L_8563700_SNP [dm3] 2L_8563700_SNP [dm6]	T	A	2.257e^-6	0.599	INTRON Sema-1a
3R	13871179	3R_13871179_SNP [dm3] 3R_18045457_SNP [dm6]	A	G	2.662e^-6	0.599	UTR_3_PRIME htl
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	2.948e^-6	0.599	INTRON salm
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	3.319e^-6	0.599	INTRON salm
2L	15881680	2L_15881680_SNP [dm3] 2L_15881680_SNP [dm6]	T	C	3.737e^-6	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	8092654	2R_8092654_SNP [dm3] 2R_12205149_SNP [dm6]	A	T	4.034e^-6	0.599	UPSTREAM CR45276 INTERGENIC
2R	8179522	2R_8179522_SNP [dm3] 2R_12292017_SNP [dm6]	G	C	4.511e^-6	0.599	INTRON CG42700
2L	11442910	2L_11442910_INS [dm3] 2L_11442910_INS [dm6]	A	ATGGCTT	4.692e^-6	0.599	INTRON salm
2R	8179555	2R_8179555_SNP [dm3] 2R_12292050_SNP [dm6]	T	G	5.400e^-6	0.599	INTRON CG42700
2R	8179587	2R_8179587_SNP [dm3] 2R_12292082_SNP [dm6]	A	G	5.785e^-6	0.599	INTRON CG42700
2L	11442875	2L_11442875_DEL [dm3] 2L_11442875_DEL [dm6]	CAC	T	5.842e^-6	0.599	INTRON salm
3R	14361056	3R_14361056_SNP [dm3] 3R_18535334_SNP [dm6]	G	A	6.603e^-6	0.599	INTRON fru
3R	16899333	3R_16899333_MNP [dm3] 3R_21073611_MNP [dm6]	GTC	ACT	6.732e^-6	0.599	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16899318	3R_16899318_INS [dm3] 3R_21073596_INS [dm6]	T	TAC	6.976e^-6	0.599	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2R	8089970	2R_8089970_SNP [dm3] 2R_12202465_SNP [dm6]	A	G	7.420e^-6	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17091721	3R_17091721_SNP [dm3] 3R_21265999_SNP [dm6]	T	G	7.583e^-6	0.599	DOWNSTREAM Rab1 & 1 other INTERGENIC
3R	16899327	3R_16899327_SNP [dm3] 3R_21073605_SNP [dm6]	T	C	7.995e^-6	0.599	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14361245	3R_14361245_SNP [dm3] 3R_18535523_SNP [dm6]	A	T	8.049e^-6	0.599	INTRON fru
3R	16899416	3R_16899416_SNP [dm3] 3R_21073694_SNP [dm6]	C	A	8.237e^-6	0.599	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16899329	3R_16899329_SNP [dm3] 3R_21073607_SNP [dm6]	A	G	8.348e^-6	0.599	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15826093	2L_15826093_SNP [dm3] 2L_15826093_SNP [dm6]	T	C	8.620e^-6	0.599	INTERGENIC
X	17620828	X_17620828_SNP [dm3] X_17726795_SNP [dm6]	A	G	1.057e^-5	0.684	INTRON CG42684
3L	15321430	3L_15321430_SNP [dm3] 3L_15328330_SNP [dm6]	T	C	1.072e^-5	0.684	INTERGENIC
2R	8157362	2R_8157362_SNP [dm3] 2R_12269857_SNP [dm6]	C	A	1.094e^-5	0.684	INTRON Cam
2R	8092581	2R_8092581_SNP [dm3] 2R_12205076_SNP [dm6]	C	T	1.195e^-5	0.692	INTERGENIC
2L	19378443	2L_19378443_SNP [dm3] 2L_19378443_SNP [dm6]	C	G	1.207e^-5	0.692	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	8173649	2R_8173649_SNP [dm3] 2R_12286144_SNP [dm6]	C	G	1.217e^-5	0.692	NON_SYNONYMOUS_CODING CG42700 INTRON CG42700
3R	12136326	3R_12136326_SNP [dm3] 3R_16310604_SNP [dm6]	C	T	1.394e^-5	0.712	UTR_3_PRIME Sulf1
3L	18211423	3L_18211423_SNP [dm3] 3L_18218323_SNP [dm6]	A	C	1.513e^-5	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16497795	2L_16497795_SNP [dm3] 2L_16497795_SNP [dm6]	A	G	1.550e^-5	0.712	INTRON Tpr2
2L	14428943	2L_14428943_SNP [dm3] 2L_14428943_SNP [dm6]	A	G	1.567e^-5	0.712	EXON CR44732	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	8171033	2R_8171033_SNP [dm3] 2R_12283528_SNP [dm6]	G	T	1.593e^-5	0.712	INTRON CG42700
2L	11442707	2L_11442707_SNP [dm3] 2L_11442707_SNP [dm6]	A	C	1.680e^-5	0.712	INTRON salm
2R	8172592	2R_8172592_SNP [dm3] 2R_12285087_SNP [dm6]	C	G	1.691e^-5	0.712	UPSTREAM CG42700 INTRON CG42700
2R	8172696	2R_8172696_SNP [dm3] 2R_12285191_SNP [dm6]	T	C	1.691e^-5	0.712	UPSTREAM CG42700 INTRON CG42700
2R	8178527	2R_8178527_SNP [dm3] 2R_12291022_SNP [dm6]	C	T	1.702e^-5	0.712	INTRON CG42700
2R	8157360	2R_8157360_SNP [dm3] 2R_12269855_SNP [dm6]	C	A	1.736e^-5	0.712	INTRON Cam
2R	8157692	2R_8157692_SNP [dm3] 2R_12270187_SNP [dm6]	G	A	1.747e^-5	0.712	INTRON Cam	TF binding site mE1_TFBS_zfh1
3L	12443040	3L_12443040_SNP [dm3] 3L_12449940_SNP [dm6]	C	T	1.767e^-5	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8174711	2R_8174711_SNP [dm3] 2R_12287206_SNP [dm6]	G	T	1.826e^-5	0.712	INTRON CG42700
3L	3927501	3L_3927501_SNP [dm3] 3L_3927501_SNP [dm6]	G	A	1.930e^-5	0.712	INTRON Eip63F-1
3R	16899281	3R_16899281_SNP [dm3] 3R_21073559_SNP [dm6]	A	T	1.979e^-5	0.712	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8697335	2L_8697335_SNP [dm3] 2L_8697335_SNP [dm6]	C	A	2.042e^-5	0.712	INTRON Hnf4
3L	8842100	3L_8842100_INS [dm3] 3L_8849000_INS [dm6]	C	CGC	2.136e^-5	0.712	INTRON dally
2L	11442751	2L_11442751_SNP [dm3] 2L_11442751_SNP [dm6]	T	C	2.369e^-5	0.712	INTRON salm
2L	8700154	2L_8700154_SNP [dm3] 2L_8700154_SNP [dm6]	C	G	2.395e^-5	0.712	UPSTREAM Hnf4 INTRON Hnf4
3L	18231717	3L_18231717_DEL [dm3] 3L_18238617_DEL [dm6]	AA	A	2.399e^-5	0.712	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	26568491	3R_26568491_SNP [dm3] 3R_30742769_SNP [dm6]	T	C	2.400e^-5	0.712	UPSTREAM CG15543 INTERGENIC
2L	11442850	2L_11442850_SNP [dm3] 2L_11442850_SNP [dm6]	G	C	2.413e^-5	0.712	INTRON salm
2R	8172504	2R_8172504_SNP [dm3] 2R_12284999_SNP [dm6]	T	A	2.437e^-5	0.712	INTRON CG42700
3R	18286355	3R_18286355_SNP [dm3] 3R_22460633_SNP [dm6]	T	G	2.513e^-5	0.712	UTR_3_PRIME CG34376 DOWNSTREAM Rpn7
3R	9721237	3R_9721237_SNP [dm3] 3R_13895515_SNP [dm6]	T	A	2.554e^-5	0.712	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8092572	2R_8092572_SNP [dm3] 2R_12205067_SNP [dm6]	C	T	2.568e^-5	0.712	INTERGENIC
3R	7734002	3R_7734002_SNP [dm3] 3R_11908280_SNP [dm6]	A	C	2.612e^-5	0.712	INTRON Cad87A
2R	8096002	2R_8096002_SNP [dm3] 2R_12208497_SNP [dm6]	C	A	2.645e^-5	0.712	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2R	8127730	2R_8127730_SNP [dm3] 2R_12240225_SNP [dm6]	T	C	2.647e^-5	0.712	UPSTREAM CG13170 & 1 other INTERGENIC
3R	18982520	3R_18982520_SNP [dm3] 3R_23156798_SNP [dm6]	A	G	2.666e^-5	0.712	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	13746070	2L_13746070_SNP [dm3] 2L_13746070_SNP [dm6]	C	A	2.808e^-5	0.712	UPSTREAM TM9SF4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11331870	3L_11331870_SNP [dm3] 3L_11338770_SNP [dm6]	T	G	2.979e^-5	0.712	INTERGENIC
2R	8096130	2R_8096130_SNP [dm3] 2R_12208625_SNP [dm6]	G	A	3.001e^-5	0.712	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8157082	2R_8157082_SNP [dm3] 2R_12269577_SNP [dm6]	A	T	3.105e^-5	0.712	INTRON Cam
3L	8842090	3L_8842090_SNP [dm3] 3L_8848990_SNP [dm6]	G	T	3.146e^-5	0.712	INTRON dally
3R	23184598	3R_23184598_SNP [dm3] 3R_27358876_SNP [dm6]	C	G	3.203e^-5	0.712	UPSTREAM CG42534 INTRON CG42534
3R	23184608	3R_23184608_SNP [dm3] 3R_27358886_SNP [dm6]	A	T	3.247e^-5	0.712	UPSTREAM CG42534 INTRON CG42534
2R	8176594	2R_8176594_SNP [dm3] 2R_12289089_SNP [dm6]	C	G	3.247e^-5	0.712	INTRON CG42700
2L	7532917	2L_7532917_SNP [dm3] 2L_7532917_SNP [dm6]	G	T	3.250e^-5	0.712	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12185848	3L_12185848_SNP [dm3] 3L_12192748_SNP [dm6]	T	C	3.280e^-5	0.712	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site mE1_TFBS_sens
3R	17091722	3R_17091722_DEL [dm3] 3R_21266000_DEL [dm6]	CCAA	C	3.329e^-5	0.712	DOWNSTREAM Rab1 & 1 other INTERGENIC
3R	23184612	3R_23184612_SNP [dm3] 3R_27358890_SNP [dm6]	G	A	3.556e^-5	0.712	UPSTREAM CG42534 INTRON CG42534
2R	12534007	2R_12534007_SNP [dm3] 2R_16646502_SNP [dm6]	A	G	3.611e^-5	0.712	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16899289	3R_16899289_SNP [dm3] 3R_21073567_SNP [dm6]	T	C	3.641e^-5	0.712	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	1503746	2L_1503746_SNP [dm3] 2L_1503746_SNP [dm6]	G	A	3.650e^-5	0.712	UPSTREAM CG7420 EXON CR44064	TF binding site BDTNP1_TFBS_dl
3R	20450455	3R_20450455_SNP [dm3] 3R_24624733_SNP [dm6]	G	C	3.675e^-5	0.712	NON_SYNONYMOUS_CODING Syx18 UPSTREAM atl DOWNSTREAM mld
3R	16899407	3R_16899407_SNP [dm3] 3R_21073685_SNP [dm6]	A	G	3.764e^-5	0.712	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8171228	2R_8171228_DEL [dm3] 2R_12283723_DEL [dm6]	AGAGTCCCATAAAGGAGTAT...	A	3.766e^-5	0.712	INTRON CG42700
2R	8171218	2R_8171218_SNP [dm3] 2R_12283713_SNP [dm6]	G	A	3.778e^-5	0.712	INTRON CG42700
3R	16899088	3R_16899088_SNP [dm3] 3R_21073366_SNP [dm6]	C	T	3.783e^-5	0.712	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	8178026	2R_8178026_SNP [dm3] 2R_12290521_SNP [dm6]	T	A	3.810e^-5	0.712	UPSTREAM CG42700 INTRON CG42700
2R	8175815	2R_8175815_SNP [dm3] 2R_12288310_SNP [dm6]	A	C	3.840e^-5	0.712	INTRON CG42700
2R	8172388	2R_8172388_SNP [dm3] 2R_12284883_SNP [dm6]	C	G	3.852e^-5	0.712	INTRON CG42700
2L	11442828	2L_11442828_INS [dm3] 2L_11442828_INS [dm6]	A	AATTGAAATTATGCAC...	3.890e^-5	0.712	INTRON salm
2R	8077706	2R_8077706_SNP [dm3] 2R_12190201_SNP [dm6]	G	T	3.918e^-5	0.712	SYNONYMOUS_CODING Cyp6g2 UPSTREAM Cyp6t3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8173240	2R_8173240_SNP [dm3] 2R_12285735_SNP [dm6]	T	A	3.961e^-5	0.712	UPSTREAM CG42700 INTRON CG42700
3R	11283491	3R_11283491_SNP [dm3] 3R_15457769_SNP [dm6]	T	C	3.967e^-5	0.712	INTRON AdamTS-A
3R	7870210	3R_7870210_SNP [dm3] 3R_12044488_SNP [dm6]	T	C	3.988e^-5	0.712	INTERGENIC
2R	8157444	2R_8157444_SNP [dm3] 2R_12269939_SNP [dm6]	C	T	3.989e^-5	0.712	INTRON Cam
2R	8178048	2R_8178048_SNP [dm3] 2R_12290543_SNP [dm6]	G	A	3.991e^-5	0.712	UPSTREAM CG42700 INTRON CG42700
3L	6614757	3L_6614757_SNP [dm3] 3L_6621657_SNP [dm6]	T	C	4.047e^-5	0.712	INTERGENIC
3L	11042828	3L_11042828_SNP [dm3] 3L_11049728_SNP [dm6]	C	T	4.048e^-5	0.712	UPSTREAM CG43693 & 1 other INTRON CG43693
2L	10013270	2L_10013270_SNP [dm3] 2L_10013270_SNP [dm6]	A	T	4.059e^-5	0.712	UTR_3_PRIME CG13131 DOWNSTREAM Trp1
X	6170015	X_6170015_SNP [dm3] X_6275982_SNP [dm6]	G	C	4.075e^-5	0.712	UTR_3_PRIME CG3566 DOWNSTREAM Spt6 & 1 other INTRON CG3566	TF binding site mE1_TFBS_HSA
2R	8170200	2R_8170200_SNP [dm3] 2R_12282695_SNP [dm6]	T	C	4.091e^-5	0.712	INTRON CG42700
3R	7359222	3R_7359222_SNP [dm3] 3R_11533500_SNP [dm6]	T	A	4.133e^-5	0.712	UTR_3_PRIME dpr4
3R	6542850	3R_6542850_SNP [dm3] 3R_10717128_SNP [dm6]	A	G	4.145e^-5	0.712	INTERGENIC
2R	8174356	2R_8174356_SNP [dm3] 2R_12286851_SNP [dm6]	T	C	4.159e^-5	0.712	INTRON CG42700
2L	18251468	2L_18251468_SNP [dm3] 2L_18251468_SNP [dm6]	A	G	4.181e^-5	0.712	NON_SYNONYMOUS_CODING CG43406 INTRON CG42750
2R	8170186	2R_8170186_SNP [dm3] 2R_12282681_SNP [dm6]	C	T	4.212e^-5	0.712	INTRON CG42700
2R	8167238	2R_8167238_SNP [dm3] 2R_12279733_SNP [dm6]	T	G	4.220e^-5	0.712	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	7633242	3R_7633242_SNP [dm3] 3R_11807520_SNP [dm6]	A	G	4.237e^-5	0.712	UPSTREAM ClC-a INTRON ClC-a
3L	9297660	3L_9297660_SNP [dm3] 3L_9304560_SNP [dm6]	C	T	4.258e^-5	0.712	INTERGENIC
3R	16897913	3R_16897913_SNP [dm3] 3R_21072191_SNP [dm6]	A	G	4.293e^-5	0.712	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12036192	3L_12036192_DEL [dm3] 3L_12043092_DEL [dm6]	AC	A	4.314e^-5	0.712	INTRON rols & 1 other	TF binding site mE1_TFBS_chinmo
3L	12185769	3L_12185769_SNP [dm3] 3L_12192669_SNP [dm6]	A	T	4.398e^-5	0.712	NON_SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P
3L	17458355	3L_17458355_SNP [dm3] 3L_17465255_SNP [dm6]	T	C	4.420e^-5	0.712	UPSTREAM CG7603 INTERGENIC
3L	17828513	3L_17828513_SNP [dm3] 3L_17835413_SNP [dm6]	A	T	4.512e^-5	0.712	UPSTREAM CG32189 INTRON Grd
2R	8096106	2R_8096106_SNP [dm3] 2R_12208601_SNP [dm6]	A	G	4.555e^-5	0.712	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10509501	2R_10509501_INS [dm3] 2R_14621996_INS [dm6]	G	GAG	4.605e^-5	0.712	UPSTREAM snoRNA:Me28S-C3227a & 4 others DOWNSTREAM snoRNA:Me18S-C1366 EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	893877	2L_893877_SNP [dm3] 2L_893877_SNP [dm6]	G	T	4.692e^-5	0.712	INTERGENIC
3R	27138249	3R_27138249_INS [dm3] 3R_31312527_INS [dm6]	A	ACCAGAGC	4.693e^-5	0.712	INTRON CG34347
2L	3311717	2L_3311717_INS [dm3] 2L_3311717_INS [dm6]	A	AGGGTA	4.805e^-5	0.712	DOWNSTREAM CG15406 INTRON CG3277	TF binding site mE1_TFBS_cad
3L	17830670	3L_17830670_SNP [dm3] 3L_17837570_SNP [dm6]	A	C	4.936e^-5	0.712	SYNONYMOUS_CODING Grd	TF binding site BDTNP1_TFBS_da
3L	17458393	3L_17458393_SNP [dm3] 3L_17465293_SNP [dm6]	C	T	4.941e^-5	0.712	UPSTREAM CG7603 INTERGENIC
2R	7926313	2R_7926313_SNP [dm3] 2R_12038808_SNP [dm6]	C	T	4.963e^-5	0.712	UTR_3_PRIME 128up UPSTREAM RpIII128	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	11442836	2L_11442836_SNP [dm3] 2L_11442836_SNP [dm6]	G	A	5.010e^-5	0.712	INTRON salm
2L	11442729	2L_11442729_SNP [dm3] 2L_11442729_SNP [dm6]	C	T	5.047e^-5	0.712	INTRON salm
2R	8169113	2R_8169113_DEL [dm3] 2R_12281608_DEL [dm6]	TACAATCAT	T	5.074e^-5	0.712	INTRON CG42700
2R	8095966	2R_8095966_SNP [dm3] 2R_12208461_SNP [dm6]	G	A	5.155e^-5	0.712	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3R	20405321	3R_20405321_SNP [dm3] 3R_24579599_SNP [dm6]	G	A	5.172e^-5	0.712	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4722391	2L_4722391_SNP [dm3] 2L_4722391_SNP [dm6]	C	G	5.215e^-5	0.712	UTR_3_PRIME CG34351
3R	19317734	3R_19317734_DEL [dm3] 3R_23492012_DEL [dm6]	AA	A	5.217e^-5	0.712	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17601977	2L_17601977_SNP [dm3] 2L_17601977_SNP [dm6]	T	C	5.253e^-5	0.712	SYNONYMOUS_CODING Sytalpha
3R	7633235	3R_7633235_SNP [dm3] 3R_11807513_SNP [dm6]	G	A	5.261e^-5	0.712	UPSTREAM ClC-a INTRON ClC-a
2R	8176900	2R_8176900_SNP [dm3] 2R_12289395_SNP [dm6]	C	A	5.346e^-5	0.712	INTRON CG42700
X	8286659	X_8286659_SNP [dm3] X_8392626_SNP [dm6]	G	A	5.368e^-5	0.712	INTERGENIC
3L	17458354	3L_17458354_SNP [dm3] 3L_17465254_SNP [dm6]	T	G	5.376e^-5	0.712	UPSTREAM CG7603 INTERGENIC
3L	9297662	3L_9297662_SNP [dm3] 3L_9304562_SNP [dm6]	C	G	5.482e^-5	0.712	INTERGENIC
2L	12403932	2L_12403932_SNP [dm3] 2L_12403932_SNP [dm6]	A	G	5.491e^-5	0.712	SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8176885	2R_8176885_SNP [dm3] 2R_12289380_SNP [dm6]	G	C	5.493e^-5	0.712	INTRON CG42700
3L	4545925	3L_4545925_SNP [dm3] 3L_4545925_SNP [dm6]	C	A	5.513e^-5	0.712	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12185838	3L_12185838_SNP [dm3] 3L_12192738_SNP [dm6]	G	A	5.615e^-5	0.712	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P
3L	3925410	3L_3925410_SNP [dm3] 3L_3925410_SNP [dm6]	C	T	5.638e^-5	0.712	INTRON Eip63F-1
3L	2357884	3L_2357884_SNP [dm3] 3L_2357884_SNP [dm6]	G	T	5.656e^-5	0.712	INTERGENIC
2L	15946852	2L_15946852_SNP [dm3] 2L_15946852_SNP [dm6]	G	T	5.657e^-5	0.712	INTRON beat-Ib
2L	15946860	2L_15946860_SNP [dm3] 2L_15946860_SNP [dm6]	T	C	5.657e^-5	0.712	INTRON beat-Ib
2L	15946863	2L_15946863_SNP [dm3] 2L_15946863_SNP [dm6]	G	A	5.657e^-5	0.712	INTRON beat-Ib
2L	15914467	2L_15914467_SNP [dm3] 2L_15914467_SNP [dm6]	T	A	5.705e^-5	0.712	INTRON beat-Ib
2L	17878646	2L_17878646_SNP [dm3] 2L_17878646_SNP [dm6]	G	A	5.740e^-5	0.712	INTERGENIC
3L	17458369	3L_17458369_SNP [dm3] 3L_17465269_SNP [dm6]	G	A	5.927e^-5	0.712	UPSTREAM CG7603 INTERGENIC
3R	7633251	3R_7633251_SNP [dm3] 3R_11807529_SNP [dm6]	T	A	6.042e^-5	0.712	UPSTREAM ClC-a INTRON ClC-a
2R	8113034	2R_8113034_DEL [dm3] 2R_12225529_DEL [dm6]	TGCGTAAA	T	6.085e^-5	0.712	INTRON CG8854
X	8896181	X_8896181_SNP [dm3] X_9002148_SNP [dm6]	A	T	6.130e^-5	0.712	INTRON rdgA & 1 other
2L	15946795	2L_15946795_DEL [dm3] 2L_15946795_DEL [dm6]	GACTTTGAGTGG...	G	6.133e^-5	0.712	INTRON beat-Ib
3L	12170060	3L_12170060_SNP [dm3] 3L_12176960_SNP [dm6]	G	A	6.147e^-5	0.712	UPSTREAM CAH2 INTERGENIC
2R	8127924	2R_8127924_SNP [dm3] 2R_12240419_SNP [dm6]	T	C	6.175e^-5	0.712	NON_SYNONYMOUS_CODING CG13170 UPSTREAM CG43315
2L	11442809	2L_11442809_SNP [dm3] 2L_11442809_SNP [dm6]	A	C	6.229e^-5	0.712	INTRON salm
2L	17601891	2L_17601891_SNP [dm3] 2L_17601891_SNP [dm6]	T	C	6.233e^-5	0.712	INTRON Sytalpha
3R	11807933	3R_11807933_SNP [dm3] 3R_15982211_SNP [dm6]	C	T	6.305e^-5	0.712	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad
2R	8174489	2R_8174489_SNP [dm3] 2R_12286984_SNP [dm6]	G	T	6.372e^-5	0.712	INTRON CG42700
3R	19609269	3R_19609269_SNP [dm3] 3R_23783547_SNP [dm6]	G	A	6.404e^-5	0.712	INTRON mbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8376369	2R_8376369_SNP [dm3] 2R_12488864_SNP [dm6]	C	A	6.404e^-5	0.712	SYNONYMOUS_CODING fdl DOWNSTREAM Dh44-R2
2R	8131121	2R_8131121_SNP [dm3] 2R_12243616_SNP [dm6]	T	C	6.406e^-5	0.712	DOWNSTREAM CG43244 & 1 other INTERGENIC
3L	6614651	3L_6614651_SNP [dm3] 3L_6621551_SNP [dm6]	T	C	6.413e^-5	0.712	INTERGENIC
2L	16336392	2L_16336392_SNP [dm3] 2L_16336392_SNP [dm6]	A	G	6.457e^-5	0.712	SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_sens
3L	6933428	3L_6933428_SNP [dm3] 3L_6940328_SNP [dm6]	A	T	6.467e^-5	0.712	UPSTREAM CR45412 INTERGENIC
2R	8172475	2R_8172475_SNP [dm3] 2R_12284970_SNP [dm6]	G	A	6.481e^-5	0.712	INTRON CG42700
3R	16898866	3R_16898866_SNP [dm3] 3R_21073144_SNP [dm6]	G	A	6.490e^-5	0.712	SYNONYMOUS_CODING r-l UPSTREAM dmrt93B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8174368	2R_8174368_SNP [dm3] 2R_12286863_SNP [dm6]	C	A	6.512e^-5	0.712	INTRON CG42700
3L	7064920	3L_7064920_SNP [dm3] 3L_7071820_SNP [dm6]	A	G	6.565e^-5	0.712	INTRON CG8641
2L	13239022	2L_13239022_SNP [dm3] 2L_13239022_SNP [dm6]	C	T	6.611e^-5	0.712	UPSTREAM CG5945 INTRON CG5867
3L	12184935	3L_12184935_SNP [dm3] 3L_12191835_SNP [dm6]	T	A	6.613e^-5	0.712	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
3R	14411841	3R_14411841_SNP [dm3] 3R_18586119_SNP [dm6]	A	C	6.683e^-5	0.712	INTRON fray & 1 other	TF binding site mE1_TFBS_Trl
2R	8092783	2R_8092783_SNP [dm3] 2R_12205278_SNP [dm6]	G	T	6.689e^-5	0.712	UPSTREAM CR45276 INTERGENIC
2R	8174256	2R_8174256_SNP [dm3] 2R_12286751_SNP [dm6]	A	C	6.771e^-5	0.712	INTRON CG42700
2R	8174583	2R_8174583_SNP [dm3] 2R_12287078_SNP [dm6]	T	C	6.823e^-5	0.712	INTRON CG42700
3L	15284361	3L_15284361_SNP [dm3] 3L_15291261_SNP [dm6]	C	T	6.845e^-5	0.712	INTERGENIC
2L	9970160	2L_9970160_SNP [dm3] 2L_9970160_SNP [dm6]	T	C	6.846e^-5	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9970156	2L_9970156_INS [dm3] 2L_9970156_INS [dm6]	T	TGGCTACTATAGTTGAGTG...	6.857e^-5	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8156978	2R_8156978_SNP [dm3] 2R_12269473_SNP [dm6]	A	G	6.868e^-5	0.712	INTRON Cam
3R	23184649	3R_23184649_SNP [dm3] 3R_27358927_SNP [dm6]	G	A	6.943e^-5	0.712	UPSTREAM CG42534 INTRON CG42534
2R	8165697	2R_8165697_DEL [dm3] 2R_12278192_DEL [dm6]	AA	A	6.952e^-5	0.712	UTR_3_PRIME Cam
3R	22704865	3R_22704865_SNP [dm3] 3R_26879143_SNP [dm6]	C	A	7.012e^-5	0.712	INTRON CG5500 & 1 other
2R	8109725	2R_8109725_SNP [dm3] 2R_12222220_SNP [dm6]	G	C	7.037e^-5	0.712	INTERGENIC
3R	19317666	3R_19317666_SNP [dm3] 3R_23491944_SNP [dm6]	A	G	7.066e^-5	0.712	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19317498	3R_19317498_SNP [dm3] 3R_23491776_SNP [dm6]	A	C	7.123e^-5	0.712	INTERGENIC
2R	8169905	2R_8169905_SNP [dm3] 2R_12282400_SNP [dm6]	C	G	7.132e^-5	0.712	INTRON CG42700
2L	9970148	2L_9970148_SNP [dm3] 2L_9970148_SNP [dm6]	T	G	7.163e^-5	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9408945	2L_9408945_SNP [dm3] 2L_9408945_SNP [dm6]	T	A	7.231e^-5	0.712	INTRON Shawl
3L	3715893	3L_3715893_SNP [dm3] 3L_3715893_SNP [dm6]	G	T	7.244e^-5	0.712	UTR_3_PRIME CG32264
2R	8170450	2R_8170450_SNP [dm3] 2R_12282945_SNP [dm6]	T	C	7.277e^-5	0.712	INTRON CG42700
2R	8084645	2R_8084645_SNP [dm3] 2R_12197140_SNP [dm6]	G	A	7.316e^-5	0.712	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
3R	25198696	3R_25198696_SNP [dm3] 3R_29372974_SNP [dm6]	C	T	7.336e^-5	0.712	INTERGENIC
2R	8119561	2R_8119561_SNP [dm3] 2R_12232056_SNP [dm6]	C	T	7.344e^-5	0.712	INTERGENIC
3L	6295124	3L_6295124_DEL [dm3] 3L_6302024_DEL [dm6]	ACCAG	A	7.346e^-5	0.712	DOWNSTREAM CR45420 INTERGENIC
3L	1608470	3L_1608470_SNP [dm3] 3L_1608470_SNP [dm6]	C	A	7.395e^-5	0.712	INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16899366	3R_16899366_SNP [dm3] 3R_21073644_SNP [dm6]	A	G	7.433e^-5	0.712	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8174378	2R_8174378_SNP [dm3] 2R_12286873_SNP [dm6]	C	G	7.468e^-5	0.712	INTRON CG42700
2R	8080226	2R_8080226_SNP [dm3] 2R_12192721_SNP [dm6]	C	G	7.477e^-5	0.712	NON_SYNONYMOUS_CODING CG8858 DOWNSTREAM Cyp6t3	TF binding site mE1_TFBS_cad
3L	15322683	3L_15322683_SNP [dm3] 3L_15329583_SNP [dm6]	A	G	7.587e^-5	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	9801859	X_9801859_SNP [dm3] X_9907826_SNP [dm6]	A	G	7.594e^-5	0.712	DOWNSTREAM CG1986 INTERGENIC
3R	13066194	3R_13066194_INS [dm3] 3R_17240472_INS [dm6]	T	TT	7.633e^-5	0.712	INTRON beat-IIb
3L	8621127	3L_8621127_SNP [dm3] 3L_8628027_SNP [dm6]	T	C	7.648e^-5	0.712	INTRON Zasp66	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8174472	2R_8174472_SNP [dm3] 2R_12286967_SNP [dm6]	T	A	7.752e^-5	0.712	INTRON CG42700
2R	8174473	2R_8174473_SNP [dm3] 2R_12286968_SNP [dm6]	A	G	7.752e^-5	0.712	INTRON CG42700
2L	9409420	2L_9409420_SNP [dm3] 2L_9409420_SNP [dm6]	T	C	7.775e^-5	0.712	INTRON Shawl
3L	12184966	3L_12184966_SNP [dm3] 3L_12191866_SNP [dm6]	G	T	7.789e^-5	0.712	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
3R	15205148	3R_15205148_SNP [dm3] 3R_19379426_SNP [dm6]	A	G	7.849e^-5	0.712	INTRON Ino80
2R	8096148	2R_8096148_SNP [dm3] 2R_12208643_SNP [dm6]	C	T	7.858e^-5	0.712	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8131999	2R_8131999_SNP [dm3] 2R_12244494_SNP [dm6]	T	C	7.901e^-5	0.712	NON_SYNONYMOUS_CODING CG43244
2R	8170796	2R_8170796_SNP [dm3] 2R_12283291_SNP [dm6]	A	T	8.049e^-5	0.712	INTRON CG42700
2R	10675442	2R_10675442_SNP [dm3] 2R_14787937_SNP [dm6]	C	A	8.075e^-5	0.712	INTRON kn	TF binding site BDTNP1_TFBS_da
3L	12464869	3L_12464869_SNP [dm3] 3L_12471769_SNP [dm6]	A	T	8.080e^-5	0.712	UTR_5_PRIME CG10616	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	5735347	3R_5735347_SNP [dm3] 3R_9909625_SNP [dm6]	T	C	8.090e^-5	0.712	INTRON Glut4EF	TF binding site mE1_TFBS_inv
2L	13768502	2L_13768502_SNP [dm3] 2L_13768502_SNP [dm6]	G	A	8.139e^-5	0.712	INTRON TM9SF4
3R	14030400	3R_14030400_SNP [dm3] 3R_18204678_SNP [dm6]	G	C	8.159e^-5	0.712	INTRON CG7985
2L	18956009	2L_18956009_SNP [dm3] 2L_18956009_SNP [dm6]	G	T	8.187e^-5	0.712	SYNONYMOUS_CODING CG10623
2R	8084634	2R_8084634_SNP [dm3] 2R_12197129_SNP [dm6]	A	C	8.200e^-5	0.712	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
3R	14677745	3R_14677745_SNP [dm3] 3R_18852023_SNP [dm6]	G	A	8.201e^-5	0.712	UPSTREAM CR45633 & 1 other INTERGENIC
3R	16899149	3R_16899149_SNP [dm3] 3R_21073427_SNP [dm6]	C	T	8.204e^-5	0.712	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	8114468	2R_8114468_SNP [dm3] 2R_12226963_SNP [dm6]	C	T	8.209e^-5	0.712	UPSTREAM CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
3R	18286724	3R_18286724_SNP [dm3] 3R_22461002_SNP [dm6]	C	T	8.237e^-5	0.712	SYNONYMOUS_CODING Rpn7 DOWNSTREAM CG34376	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25613985	3R_25613985_SNP [dm3] 3R_29788263_SNP [dm6]	C	T	8.269e^-5	0.712	UPSTREAM kay INTRON kay
3L	12185514	3L_12185514_SNP [dm3] 3L_12192414_SNP [dm6]	G	T	8.322e^-5	0.712	NON_SYNONYMOUS_CODING Est-P UTR_3_PRIME thoc6 DOWNSTREAM thoc6
2R	8176481	2R_8176481_SNP [dm3] 2R_12288976_SNP [dm6]	C	T	8.355e^-5	0.712	INTRON CG42700
2L	15946873	2L_15946873_MNP [dm3] 2L_15946873_MNP [dm6]	CTC	TAT	8.366e^-5	0.712	INTRON beat-Ib
2R	8078384	2R_8078384_SNP [dm3] 2R_12190879_SNP [dm6]	C	T	8.421e^-5	0.712	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3L	2796298	3L_2796298_SNP [dm3] 3L_2796298_SNP [dm6]	C	T	8.429e^-5	0.712	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	3778985	2R_3778985_SNP [dm3] 2R_7891480_SNP [dm6]	C	T	8.475e^-5	0.713	INTRON CG30377
3R	5933432	3R_5933432_SNP [dm3] 3R_10107710_SNP [dm6]	T	G	8.661e^-5	0.723	INTRON Fmr1	TF binding site BDTNP1_TFBS_da
X	15265189	X_15265189_SNP [dm3] X_15371156_SNP [dm6]	G	T	8.672e^-5	0.723	INTRON acj6
3R	7734023	3R_7734023_SNP [dm3] 3R_11908301_SNP [dm6]	C	G	8.800e^-5	0.727	INTRON Cad87A
3L	2541601	3L_2541601_DEL [dm3] 3L_2541601_DEL [dm6]	TTT	T	8.845e^-5	0.727	INTRON Spn
2L	4599184	2L_4599184_SNP [dm3] 2L_4599184_SNP [dm6]	G	A	8.862e^-5	0.727	INTRON dp	TF binding site mE1_TFBS_sbb
3R	6549152	3R_6549152_SNP [dm3] 3R_10723430_SNP [dm6]	A	T	8.923e^-5	0.727	INTERGENIC
X	17666590	X_17666590_DEL [dm3] X_17772557_DEL [dm6]	GTG	G	8.950e^-5	0.727	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
2R	8166578	2R_8166578_SNP [dm3] 2R_12279073_SNP [dm6]	A	T	8.956e^-5	0.727	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	8132014	2R_8132014_SNP [dm3] 2R_12244509_SNP [dm6]	C	T	8.989e^-5	0.727	NON_SYNONYMOUS_CODING CG43244
2R	8159156	2R_8159156_SNP [dm3] 2R_12271651_SNP [dm6]	C	G	9.040e^-5	0.728	INTRON Cam	TF binding site mE1_TFBS_Trl
3R	19776315	3R_19776315_SNP [dm3] 3R_23950593_SNP [dm6]	A	G	9.250e^-5	0.738	INTERGENIC
3R	14537710	3R_14537710_SNP [dm3] 3R_18711988_SNP [dm6]	T	G	9.269e^-5	0.738	INTRON VAChT & 1 other
3R	13880833	3R_13880833_SNP [dm3] 3R_18055111_SNP [dm6]	T	C	9.290e^-5	0.738	INTERGENIC
2R	8169033	2R_8169033_SNP [dm3] 2R_12281528_SNP [dm6]	A	G	9.404e^-5	0.74	INTRON CG42700
2R	8164790	2R_8164790_SNP [dm3] 2R_12277285_SNP [dm6]	G	C	9.464e^-5	0.74	UTR_3_PRIME Cam DOWNSTREAM Cam
3R	6539922	3R_6539922_SNP [dm3] 3R_10714200_SNP [dm6]	T	C	9.526e^-5	0.74	UPSTREAM CG4073 INTERGENIC
3R	25217525	3R_25217525_SNP [dm3] 3R_29391803_SNP [dm6]	T	C	9.544e^-5	0.74	INTRON Ptp99A
2R	8092696	2R_8092696_SNP [dm3] 2R_12205191_SNP [dm6]	C	A	9.551e^-5	0.74	UPSTREAM CR45276 INTERGENIC
3L	12185525	3L_12185525_SNP [dm3] 3L_12192425_SNP [dm6]	C	T	9.689e^-5	0.74	SPLICE_SITE_ACCEPTOR thoc6 SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6 INTRON thoc6
3L	7739652	3L_7739652_SNP [dm3] 3L_7746552_SNP [dm6]	A	G	9.731e^-5	0.74	UPSTREAM CG13685 INTRON CG32373
2R	10898589	2R_10898589_SNP [dm3] 2R_15011084_SNP [dm6]	A	T	9.789e^-5	0.74	UPSTREAM hbs INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3R	25161713	3R_25161713_SNP [dm3] 3R_29335991_SNP [dm6]	T	C	9.808e^-5	0.74	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8171005	2R_8171005_SNP [dm3] 2R_12283500_SNP [dm6]	G	T	9.815e^-5	0.74	INTRON CG42700
3R	22853766	3R_22853766_SNP [dm3] 3R_27028044_SNP [dm6]	T	G	9.815e^-5	0.74	NON_SYNONYMOUS_CODING RYa-R	TF binding site mE1_TFBS_cad
2R	9740743	2R_9740743_SNP [dm3] 2R_13853238_SNP [dm6]	G	C	9.888e^-5	0.74	SYNONYMOUS_CODING CG6543 DOWNSTREAM CG30485	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_inv
2R	14241405	2R_14241405_SNP [dm3] 2R_18353900_SNP [dm6]	C	T	9.903e^-5	0.74	INTRON sbb	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	7729799	3R_7729799_SNP [dm3] 3R_11904077_SNP [dm6]	C	T	9.968e^-5	0.74	INTRON Cad87A
2L	15884815	2L_15884815_SNP [dm3] 2L_15884815_SNP [dm6]	T	G	9.972e^-5	0.74	INTERGENIC
3R	16892859	3R_16892859_SNP [dm3] 3R_21067137_SNP [dm6]	G	T	1.001e^-4	0.74	INTRON AnxB9
2L	5717555	2L_5717555_SNP [dm3] 2L_5717555_SNP [dm6]	C	T	1.002e^-4	0.74	SYNONYMOUS_CODING CG34011 UPSTREAM CG14007 DOWNSTREAM CG11149
3L	3719416	3L_3719416_DEL [dm3] 3L_3719416_DEL [dm6]	TTT	T	1.005e^-4	0.74	INTRON CG32264	TF binding site mE1_TFBS_cad
2R	8168592	2R_8168592_SNP [dm3] 2R_12281087_SNP [dm6]	T	A	1.007e^-4	0.74	INTRON CG42700
3L	9226102	3L_9226102_SNP [dm3] 3L_9233002_SNP [dm6]	C	T	1.010e^-4	0.74	INTERGENIC
3L	7739649	3L_7739649_SNP [dm3] 3L_7746549_SNP [dm6]	T	C	1.018e^-4	0.743	UPSTREAM CG13685 INTRON CG32373
2R	8113408	2R_8113408_SNP [dm3] 2R_12225903_SNP [dm6]	G	T	1.022e^-4	0.743	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	8625713	2L_8625713_SNP [dm3] 2L_8625713_SNP [dm6]	C	T	1.034e^-4	0.748	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
3L	6295136	3L_6295136_DEL [dm3] 3L_6302036_DEL [dm6]	ACGTTTCCTA	A	1.037e^-4	0.748	DOWNSTREAM CR45420 INTERGENIC
3L	8859865	3L_8859865_SNP [dm3] 3L_8866765_SNP [dm6]	G	A	1.048e^-4	0.75	INTRON dally
X	11598745	X_11598745_SNP [dm3] X_11704712_SNP [dm6]	T	G	1.050e^-4	0.75	NON_SYNONYMOUS_CODING CG2444 DOWNSTREAM PhKgamma	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6228806	3R_6228806_DEL [dm3] 3R_10403084_DEL [dm6]	TGATTACATATGTATATTTT...	T	1.053e^-4	0.75	UTR_3_PRIME CG6325 DOWNSTREAM mthl11
3R	13866352	3R_13866352_SNP [dm3] 3R_18040630_SNP [dm6]	C	A	1.060e^-4	0.75	INTERGENIC
2L	9408911	2L_9408911_SNP [dm3] 2L_9408911_SNP [dm6]	G	C	1.063e^-4	0.75	INTRON Shawl
3R	16899434	3R_16899434_SNP [dm3] 3R_21073712_SNP [dm6]	T	C	1.063e^-4	0.75	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8169899	2R_8169899_INS [dm3] 2R_12282394_INS [dm6]	T	TTT	1.069e^-4	0.751	INTRON CG42700
2L	9970147	2L_9970147_SNP [dm3] 2L_9970147_SNP [dm6]	T	C	1.073e^-4	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7733789	3R_7733789_SNP [dm3] 3R_11908067_SNP [dm6]	G	A	1.080e^-4	0.753	INTRON Cad87A
3R	7878843	3R_7878843_SNP [dm3] 3R_12053121_SNP [dm6]	T	G	1.094e^-4	0.76	INTERGENIC
3L	19931818	3L_19931818_SNP [dm3] 3L_19938718_SNP [dm6]	C	A	1.102e^-4	0.763	UPSTREAM Ac76E INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6439693	X_6439693_SNP [dm3] X_6545660_SNP [dm6]	G	C	1.109e^-4	0.765	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8078325	2R_8078325_SNP [dm3] 2R_12190820_SNP [dm6]	G	T	1.115e^-4	0.766	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3R	6590332	3R_6590332_SNP [dm3] 3R_10764610_SNP [dm6]	C	A	1.120e^-4	0.766	INTRON Cap-H2
2L	10013254	2L_10013254_DEL [dm3] 2L_10013254_DEL [dm6]	ATAGA	A	1.124e^-4	0.766	UTR_3_PRIME CG13131 DOWNSTREAM Trp1
X	8896188	X_8896188_INS [dm3] X_9002155_INS [dm6]	C	CC	1.129e^-4	0.767	INTRON rdgA & 1 other
2R	8181364	2R_8181364_SNP [dm3] 2R_12293859_SNP [dm6]	T	G	1.145e^-4	0.775	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10954249	2R_10954249_SNP [dm3] 2R_15066744_SNP [dm6]	G	C	1.154e^-4	0.779	INTERGENIC	TF binding site mE1_TFBS_cad
3R	11000337	3R_11000337_SNP [dm3] 3R_15174615_SNP [dm6]	C	T	1.159e^-4	0.779	DOWNSTREAM Mf INTRON Mf & 1 other
2L	14404994	2L_14404994_SNP [dm3] 2L_14404994_SNP [dm6]	A	C	1.164e^-4	0.78	INTRON elB	TF binding site mE1_TFBS_cad
3R	16899430	3R_16899430_SNP [dm3] 3R_21073708_SNP [dm6]	A	T	1.175e^-4	0.781	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8176561	2R_8176561_SNP [dm3] 2R_12289056_SNP [dm6]	A	G	1.189e^-4	0.781	INTRON CG42700
2R	8090564	2R_8090564_SNP [dm3] 2R_12203059_SNP [dm6]	G	A	1.189e^-4	0.781	INTERGENIC
3L	1070548	3L_1070548_SNP [dm3] 3L_1070548_SNP [dm6]	C	T	1.193e^-4	0.781	INTRON bab1	TF binding site BDTNP1_TFBS_twi
X	9179925	X_9179925_SNP [dm3] X_9285892_SNP [dm6]	A	C	1.197e^-4	0.781	UTR_5_PRIME lz
2L	9970154	2L_9970154_INS [dm3] 2L_9970154_INS [dm6]	A	AGG	1.198e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3719405	3L_3719405_SNP [dm3] 3L_3719405_SNP [dm6]	G	A	1.202e^-4	0.781	INTRON CG32264	TF binding site mE1_TFBS_cad
2R	8117910	2R_8117910_SNP [dm3] 2R_12230405_SNP [dm6]	C	G	1.203e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8158204	2R_8158204_DEL [dm3] 2R_12270699_DEL [dm6]	AGGCGATAATGGCA...	A	1.212e^-4	0.781	INTRON Cam	TF binding site mE1_TFBS_zfh1
2R	8158201	2R_8158201_INS [dm3] 2R_12270696_INS [dm6]	A	ATCAG	1.216e^-4	0.781	INTRON Cam	TF binding site mE1_TFBS_zfh1
2R	8166938	2R_8166938_SNP [dm3] 2R_12279433_SNP [dm6]	C	G	1.220e^-4	0.781	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	8078974	2R_8078974_SNP [dm3] 2R_12191469_SNP [dm6]	G	C	1.221e^-4	0.781	NON_SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
2R	7474579	2R_7474579_SNP [dm3] 2R_11587074_SNP [dm6]	G	C	1.232e^-4	0.781	INTRON tou
3L	5909512	3L_5909512_DEL [dm3] 3L_5916412_DEL [dm6]	ACGTTATCAA	A	1.232e^-4	0.781	INTRON CG13288
2L	13981614	2L_13981614_SNP [dm3] 2L_13981614_SNP [dm6]	A	T	1.238e^-4	0.781	INTRON NimC2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8174478	2R_8174478_SNP [dm3] 2R_12286973_SNP [dm6]	A	T	1.238e^-4	0.781	INTRON CG42700
2R	8132004	2R_8132004_SNP [dm3] 2R_12244499_SNP [dm6]	T	C	1.239e^-4	0.781	NON_SYNONYMOUS_CODING CG43244
3L	6930694	3L_6930694_SNP [dm3] 3L_6937594_SNP [dm6]	C	T	1.246e^-4	0.781	DOWNSTREAM CR45414 INTERGENIC
2L	7080281	2L_7080281_SNP [dm3] 2L_7080281_SNP [dm6]	G	C	1.251e^-4	0.781	UPSTREAM CR44611 INTRON Pvf2
3R	13901400	3R_13901400_SNP [dm3] 3R_18075678_SNP [dm6]	A	G	1.253e^-4	0.781	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18968003	2R_18968003_SNP [dm3] 2R_23080480_SNP [dm6]	A	T	1.254e^-4	0.781	UPSTREAM Gr59a & 1 other INTERGENIC
3R	26568800	3R_26568800_SNP [dm3] 3R_30743078_SNP [dm6]	G	A	1.268e^-4	0.786	SYNONYMOUS_CODING CG15543
2R	8131204	2R_8131204_INS [dm3] 2R_12243699_INS [dm6]	G	GTC	1.271e^-4	0.786	DOWNSTREAM CG43244 & 1 other INTERGENIC
2R	8178856	2R_8178856_DEL [dm3] 2R_12291351_DEL [dm6]	TC	T	1.274e^-4	0.786	INTRON CG42700
2R	12547878	2R_12547878_SNP [dm3] 2R_16660373_SNP [dm6]	G	A	1.279e^-4	0.787	INTRON Picot
3R	19795673	3R_19795673_SNP [dm3] 3R_23969951_SNP [dm6]	G	T	1.289e^-4	0.789	INTRON CG31140
3L	9328509	3L_9328509_SNP [dm3] 3L_9335409_SNP [dm6]	A	G	1.295e^-4	0.789	UPSTREAM PGRP-LA INTRON PGRP-LA
3R	5928087	3R_5928087_SNP [dm3] 3R_10102365_SNP [dm6]	G	A	1.296e^-4	0.789	UTR_3_PRIME Fmr1 DOWNSTREAM Fmr1	TF binding site BDTNP1_TFBS_da
2R	8171058	2R_8171058_SNP [dm3] 2R_12283553_SNP [dm6]	T	A	1.304e^-4	0.789	INTRON CG42700
2L	9113978	2L_9113978_SNP [dm3] 2L_9113978_SNP [dm6]	T	G	1.312e^-4	0.789	DOWNSTREAM Or30a INTERGENIC
3R	13069770	3R_13069770_SNP [dm3] 3R_17244048_SNP [dm6]	A	C	1.312e^-4	0.789	INTRON beat-IIb
3R	13872197	3R_13872197_SNP [dm3] 3R_18046475_SNP [dm6]	T	C	1.312e^-4	0.789	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
2R	8170102	2R_8170102_SNP [dm3] 2R_12282597_SNP [dm6]	G	A	1.317e^-4	0.789	INTRON CG42700
3L	17458321	3L_17458321_DEL [dm3] 3L_17465221_DEL [dm6]	TAAACTGAAGATTTCGCCTT...	T	1.323e^-4	0.789	UPSTREAM CG7603 INTERGENIC
2R	8095506	2R_8095506_SNP [dm3] 2R_12208001_SNP [dm6]	T	A	1.325e^-4	0.789	DOWNSTREAM CR45276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14540537	3R_14540537_SNP [dm3] 3R_18714815_SNP [dm6]	A	G	1.338e^-4	0.792	UTR_3_PRIME VAChT INTRON Cha
2L	15946848	2L_15946848_SNP [dm3] 2L_15946848_SNP [dm6]	T	A	1.339e^-4	0.792	INTRON beat-Ib
3L	17478491	3L_17478491_SNP [dm3] 3L_17485391_SNP [dm6]	C	A	1.355e^-4	0.793	INTRON CG6333
3L	2541596	3L_2541596_SNP [dm3] 3L_2541596_SNP [dm6]	A	C	1.358e^-4	0.793	INTRON Spn
2R	8132007	2R_8132007_SNP [dm3] 2R_12244502_SNP [dm6]	C	T	1.358e^-4	0.793	NON_SYNONYMOUS_CODING CG43244
2L	16067006	2L_16067006_SNP [dm3] 2L_16067006_SNP [dm6]	C	T	1.359e^-4	0.793	INTRON beat-Ia
3R	25631242	3R_25631242_SNP [dm3] 3R_29805520_SNP [dm6]	T	A	1.362e^-4	0.793	NON_SYNONYMOUS_CODING ncd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	13477893	X_13477893_SNP [dm3] X_13583860_SNP [dm6]	C	A	1.382e^-4	0.8	INTRON Tango13
3L	5814194	3L_5814194_SNP [dm3] 3L_5821094_SNP [dm6]	C	A	1.393e^-4	0.8	INTRON vn
3L	6295133	3L_6295133_SNP [dm3] 3L_6302033_SNP [dm6]	A	T	1.398e^-4	0.8	DOWNSTREAM CR45420 INTERGENIC
X	6439707	X_6439707_MNP [dm3] X_6545674_MNP [dm6]	TTTA	ACCT	1.406e^-4	0.8	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16145990	2R_16145990_SNP [dm3] 2R_20258485_SNP [dm6]	A	G	1.410e^-4	0.8	NON_SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11743473	X_11743473_SNP [dm3] X_11849440_SNP [dm6]	T	G	1.410e^-4	0.8	DOWNSTREAM CR45619 INTERGENIC
2L	10559613	2L_10559613_SNP [dm3] 2L_10559613_SNP [dm6]	A	T	1.411e^-4	0.8	INTRON Trim9
3R	25154451	3R_25154451_INS [dm3] 3R_29328729_INS [dm6]	A	ACA	1.413e^-4	0.8	INTERGENIC
3L	10535688	3L_10535688_SNP [dm3] 3L_10542588_SNP [dm6]	G	A	1.419e^-4	0.8	INTRON A2bp1
3L	22147079	3L_22147079_SNP [dm3] 3L_22153979_SNP [dm6]	G	A	1.419e^-4	0.8	INTRON olf413
X	9890659	X_9890659_SNP [dm3] X_9996626_SNP [dm6]	G	A	1.430e^-4	0.8	INTRON CG32694
2R	8128010	2R_8128010_SNP [dm3] 2R_12240505_SNP [dm6]	T	A	1.432e^-4	0.8	NON_SYNONYMOUS_CODING CG13170 UPSTREAM CG43315
3L	15285098	3L_15285098_SNP [dm3] 3L_15291998_SNP [dm6]	A	C	1.443e^-4	0.8	INTERGENIC
3L	7739688	3L_7739688_SNP [dm3] 3L_7746588_SNP [dm6]	T	C	1.448e^-4	0.8	UPSTREAM CG13685 INTRON CG32373
2L	11468265	2L_11468265_SNP [dm3] 2L_11468265_SNP [dm6]	C	G	1.460e^-4	0.8	INTERGENIC
2L	9068139	2L_9068139_DEL [dm3] 2L_9068139_DEL [dm6]	GACTCGCTTATG...	G	1.463e^-4	0.8	INTRON CG31708
3L	8605800	3L_8605800_SNP [dm3] 3L_8612700_SNP [dm6]	C	A	1.466e^-4	0.8	INTRON CG6282
2L	19409391	2L_19409391_SNP [dm3] 2L_19409391_SNP [dm6]	G	C	1.467e^-4	0.8	INTRON Pax	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	2541606	3L_2541606_SNP [dm3] 3L_2541606_SNP [dm6]	A	T	1.467e^-4	0.8	INTRON Spn
2R	12704544	2R_12704544_SNP [dm3] 2R_16817039_SNP [dm6]	G	A	1.468e^-4	0.8	SYNONYMOUS_CODING CG5550 DOWNSTREAM CR43417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4916713	3L_4916713_SNP [dm3] 3L_4916713_SNP [dm6]	T	A	1.471e^-4	0.8	INTRON Rh50
2L	18759093	2L_18759093_SNP [dm3] 2L_18759093_SNP [dm6]	A	C	1.471e^-4	0.8	INTERGENIC
2R	8174465	2R_8174465_SNP [dm3] 2R_12286960_SNP [dm6]	G	T	1.472e^-4	0.8	INTRON CG42700
2R	14093831	2R_14093831_SNP [dm3] 2R_18206326_SNP [dm6]	A	T	1.477e^-4	0.8	INTERGENIC
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	1.483e^-4	0.8	INTERGENIC
3R	11140995	3R_11140995_SNP [dm3] 3R_15315273_SNP [dm6]	C	G	1.484e^-4	0.8	DOWNSTREAM Tm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5673273	3L_5673273_SNP [dm3] 3L_5680173_SNP [dm6]	G	T	1.495e^-4	0.8	INTRON sif
3R	17932818	3R_17932818_SNP [dm3] 3R_22107096_SNP [dm6]	A	T	1.499e^-4	0.8	INTRON CG5778
2R	8113333	2R_8113333_SNP [dm3] 2R_12225828_SNP [dm6]	C	T	1.501e^-4	0.8	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18781217	2L_18781217_SNP [dm3] 2L_18781217_SNP [dm6]	G	A	1.501e^-4	0.8	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	8174467	2R_8174467_SNP [dm3] 2R_12286962_SNP [dm6]	G	T	1.519e^-4	0.802	INTRON CG42700
2R	8172815	2R_8172815_SNP [dm3] 2R_12285310_SNP [dm6]	C	A	1.527e^-4	0.802	UPSTREAM CG42700 INTRON CG42700
3R	13417822	3R_13417822_SNP [dm3] 3R_17592100_SNP [dm6]	C	T	1.537e^-4	0.802	INTERGENIC
3R	14157155	3R_14157155_SNP [dm3] 3R_18331433_SNP [dm6]	C	G	1.549e^-4	0.802	UTR_3_PRIME CG15803	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	11442767	2L_11442767_SNP [dm3] 2L_11442767_SNP [dm6]	T	C	1.550e^-4	0.802	INTRON salm
3R	6542671	3R_6542671_SNP [dm3] 3R_10716949_SNP [dm6]	A	G	1.554e^-4	0.802	INTERGENIC
2R	4236354	2R_4236354_SNP [dm3] 2R_8348849_SNP [dm6]	A	G	1.555e^-4	0.802	INTRON pdm3
2R	8306402	2R_8306402_SNP [dm3] 2R_12418897_SNP [dm6]	A	G	1.558e^-4	0.802	DOWNSTREAM CG42782 & 2 others INTERGENIC
3L	15117472	3L_15117472_MNP [dm3] 3L_15124372_MNP [dm6]	GAGA	TGCT	1.565e^-4	0.802	INTRON Cep135 & 1 other
2R	8096236	2R_8096236_SNP [dm3] 2R_12208731_SNP [dm6]	A	C	1.574e^-4	0.802	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16427777	2L_16427777_SNP [dm3] 2L_16427777_SNP [dm6]	A	G	1.578e^-4	0.802	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	8157616	2R_8157616_SNP [dm3] 2R_12270111_SNP [dm6]	T	A	1.589e^-4	0.802	INTRON Cam
3L	17820440	3L_17820440_DEL [dm3] 3L_17827340_DEL [dm6]	GTTGAGTCATAAACATATTT...	G	1.595e^-4	0.802	INTRON Grd
2L	9408965	2L_9408965_SNP [dm3] 2L_9408965_SNP [dm6]	T	A	1.604e^-4	0.802	INTRON Shawl
2R	16317772	2R_16317772_INS [dm3] 2R_20430267_INS [dm6]	T	TT	1.610e^-4	0.802	INTRON CG12484
X	16775740	X_16775740_SNP [dm3] X_16881707_SNP [dm6]	G	A	1.612e^-4	0.802	NON_SYNONYMOUS_CODING CG4872 DOWNSTREAM CG9104	TF binding site mE1_TFBS_chinmo
X	8552458	X_8552458_SNP [dm3] X_8658425_SNP [dm6]	A	G	1.618e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12547820	2R_12547820_SNP [dm3] 2R_16660315_SNP [dm6]	G	A	1.618e^-4	0.802	INTRON Picot
2R	8157598	2R_8157598_SNP [dm3] 2R_12270093_SNP [dm6]	C	T	1.618e^-4	0.802	INTRON Cam
3L	16774566	3L_16774566_SNP [dm3] 3L_16781466_SNP [dm6]	C	T	1.634e^-4	0.802	SYNONYMOUS_CODING CG9705	TF binding site BDTNP1_TFBS_dl
2R	10711657	2R_10711657_SNP [dm3] 2R_14824152_SNP [dm6]	A	T	1.636e^-4	0.802	EXON CR45329
2R	2729466	2R_2729466_SNP [dm3] 2R_6841961_SNP [dm6]	G	A	1.640e^-4	0.802	EXON CR44166
3L	16309570	3L_16309570_SNP [dm3] 3L_16316470_SNP [dm6]	T	A	1.640e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17472686	3L_17472686_SNP [dm3] 3L_17479586_SNP [dm6]	T	C	1.640e^-4	0.802	SYNONYMOUS_CODING qjt UPSTREAM CG13733 DOWNSTREAM CG6333
3L	17183633	3L_17183633_SNP [dm3] 3L_17190533_SNP [dm6]	A	G	1.667e^-4	0.802	INTRON Rbp6
3L	7739746	3L_7739746_SNP [dm3] 3L_7746646_SNP [dm6]	A	G	1.672e^-4	0.802	UPSTREAM CG13685 INTRON CG32373
3L	18211422	3L_18211422_SNP [dm3] 3L_18218322_SNP [dm6]	A	G	1.674e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12889098	X_12889098_SNP [dm3] X_12995065_SNP [dm6]	G	A	1.677e^-4	0.802	INTRON rad	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9553695	2R_9553695_SNP [dm3] 2R_13666190_SNP [dm6]	A	C	1.680e^-4	0.802	SYNONYMOUS_CODING CG13337 INTRON fas
3R	26182554	3R_26182554_SNP [dm3] 3R_30356832_SNP [dm6]	C	T	1.681e^-4	0.802	INTRON hdc
2R	8092786	2R_8092786_SNP [dm3] 2R_12205281_SNP [dm6]	C	T	1.682e^-4	0.802	UPSTREAM CR45276 INTERGENIC
2L	9970180	2L_9970180_SNP [dm3] 2L_9970180_SNP [dm6]	A	G	1.691e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8166984	2R_8166984_SNP [dm3] 2R_12279479_SNP [dm6]	A	G	1.693e^-4	0.802	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	8114221	2R_8114221_SNP [dm3] 2R_12226716_SNP [dm6]	G	T	1.694e^-4	0.802	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
2L	19144122	2L_19144122_SNP [dm3] 2L_19144122_SNP [dm6]	A	G	1.717e^-4	0.802	INTRON brat
2L	19549003	2L_19549003_SNP [dm3] 2L_19549003_SNP [dm6]	T	G	1.728e^-4	0.802	UPSTREAM Tep4 INTRON Tep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	6439702	X_6439702_SNP [dm3] X_6545669_SNP [dm6]	C	T	1.729e^-4	0.802	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7996162	2L_7996162_SNP [dm3] 2L_7996162_SNP [dm6]	A	G	1.731e^-4	0.802	SYNONYMOUS_CODING CG7227 EXON CR44996	TF binding site mE1_TFBS_chinmo
3R	14630857	3R_14630857_SNP [dm3] 3R_18805135_SNP [dm6]	T	C	1.734e^-4	0.802	UTR_3_PRIME CG18208
2R	9740644	2R_9740644_SNP [dm3] 2R_13853139_SNP [dm6]	G	A	1.736e^-4	0.802	DOWNSTREAM CG30485 INTRON CG6543	TF binding site BDTNP1_TFBS_sna mE1_TFBS_inv
3R	13856926	3R_13856926_SNP [dm3] 3R_18031204_SNP [dm6]	C	T	1.744e^-4	0.802	INTERGENIC
3R	6549159	3R_6549159_SNP [dm3] 3R_10723437_SNP [dm6]	T	C	1.746e^-4	0.802	INTERGENIC
2R	8092306	2R_8092306_SNP [dm3] 2R_12204801_SNP [dm6]	C	T	1.752e^-4	0.802	INTERGENIC
3L	9226068	3L_9226068_SNP [dm3] 3L_9232968_SNP [dm6]	T	A	1.756e^-4	0.802	INTERGENIC
2L	16497833	2L_16497833_SNP [dm3] 2L_16497833_SNP [dm6]	T	C	1.762e^-4	0.802	INTRON Tpr2
X	16429685	X_16429685_SNP [dm3] X_16535652_SNP [dm6]	G	C	1.763e^-4	0.802	INTERGENIC
X	16640847	X_16640847_SNP [dm3] X_16746814_SNP [dm6]	T	G	1.765e^-4	0.802	UPSTREAM CG9634 INTRON CG9634
3L	3912877	3L_3912877_SNP [dm3] 3L_3912877_SNP [dm6]	C	A	1.770e^-4	0.802	INTRON Eip63F-1	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	15117467	3L_15117467_SNP [dm3] 3L_15124367_SNP [dm6]	T	A	1.779e^-4	0.802	INTRON Cep135 & 1 other
2R	8185461	2R_8185461_SNP [dm3] 2R_12297956_SNP [dm6]	C	T	1.779e^-4	0.802	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
3R	13882630	3R_13882630_SNP [dm3] 3R_18056908_SNP [dm6]	G	A	1.783e^-4	0.802	INTERGENIC
3R	16892963	3R_16892963_SNP [dm3] 3R_21067241_SNP [dm6]	C	T	1.785e^-4	0.802	INTRON AnxB9
2R	7474435	2R_7474435_SNP [dm3] 2R_11586930_SNP [dm6]	A	C	1.787e^-4	0.802	SYNONYMOUS_CODING tou
3L	4545923	3L_4545923_SNP [dm3] 3L_4545923_SNP [dm6]	T	A	1.788e^-4	0.802	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	4139904	2R_4139904_SNP [dm3] 2R_8252399_SNP [dm6]	A	C	1.789e^-4	0.802	INTERGENIC
3R	14538100	3R_14538100_SNP [dm3] 3R_18712378_SNP [dm6]	A	T	1.789e^-4	0.802	INTRON VAChT & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	6537262	3R_6537262_SNP [dm3] 3R_10711540_SNP [dm6]	T	C	1.792e^-4	0.802	UPSTREAM CG14689 INTERGENIC
3R	7633265	3R_7633265_INS [dm3] 3R_11807543_INS [dm6]	T	TA	1.796e^-4	0.802	UPSTREAM ClC-a INTRON ClC-a
3L	17803258	3L_17803258_SNP [dm3] 3L_17810158_SNP [dm6]	T	C	1.800e^-4	0.802	NON_SYNONYMOUS_CODING cln3
3L	12185047	3L_12185047_SNP [dm3] 3L_12191947_SNP [dm6]	G	A	1.801e^-4	0.802	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
2R	8117911	2R_8117911_SNP [dm3] 2R_12230406_SNP [dm6]	A	C	1.802e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	14403491	2L_14403491_SNP [dm3] 2L_14403491_SNP [dm6]	T	C	1.809e^-4	0.802	INTRON elB	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	8120586	2R_8120586_SNP [dm3] 2R_12233081_SNP [dm6]	G	A	1.815e^-4	0.802	DOWNSTREAM CR44313 INTERGENIC
2R	8131189	2R_8131189_SNP [dm3] 2R_12243684_SNP [dm6]	A	C	1.818e^-4	0.802	DOWNSTREAM CG43244 & 1 other INTERGENIC
3L	6612739	3L_6612739_DEL [dm3] 3L_6619639_DEL [dm6]	TGGACTGGACT...	T	1.827e^-4	0.802	DOWNSTREAM CG8398 INTERGENIC
3R	17633445	3R_17633445_INS [dm3] 3R_21807723_INS [dm6]	T	TT	1.829e^-4	0.802	UTR_5_PRIME CASK INTRON CASK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8103531	2R_8103531_SNP [dm3] 2R_12216026_SNP [dm6]	A	G	1.834e^-4	0.802	INTERGENIC
2R	8087309	2R_8087309_SNP [dm3] 2R_12199804_SNP [dm6]	T	C	1.835e^-4	0.802	UPSTREAM CG8858 & 2 others INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	21703221	3R_21703221_SNP [dm3] 3R_25877499_SNP [dm6]	T	G	1.840e^-4	0.802	INTRON Tsp96F	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	7735809	3R_7735809_SNP [dm3] 3R_11910087_SNP [dm6]	A	G	1.844e^-4	0.802	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6439685	X_6439685_SNP [dm3] X_6545652_SNP [dm6]	T	G	1.855e^-4	0.802	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6549161	3R_6549161_SNP [dm3] 3R_10723439_SNP [dm6]	T	C	1.858e^-4	0.802	INTERGENIC
3L	2574258	3L_2574258_INS [dm3] 3L_2574258_INS [dm6]	A	AGA	1.864e^-4	0.802	INTRON msn
2L	12006378	2L_12006378_SNP [dm3] 2L_12006378_SNP [dm6]	C	T	1.864e^-4	0.802	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	15852567	2L_15852567_DEL [dm3] 2L_15852567_DEL [dm6]	ATAA	A	1.872e^-4	0.802	UPSTREAM CG13243 INTERGENIC
3L	15117470	3L_15117470_SNP [dm3] 3L_15124370_SNP [dm6]	A	C	1.872e^-4	0.802	INTRON Cep135 & 1 other
3R	11591946	3R_11591946_DEL [dm3] 3R_15766224_DEL [dm6]	AA	A	1.875e^-4	0.802	DOWNSTREAM CG5623 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	8114650	2R_8114650_SNP [dm3] 2R_12227145_SNP [dm6]	T	A	1.884e^-4	0.802	UPSTREAM CG8854 INTRON CG8854
2R	8170966	2R_8170966_SNP [dm3] 2R_12283461_SNP [dm6]	A	G	1.891e^-4	0.802	INTRON CG42700
3R	11293188	3R_11293188_SNP [dm3] 3R_15467466_SNP [dm6]	C	T	1.897e^-4	0.802	INTRON AdamTS-A
3L	10025429	3L_10025429_SNP [dm3] 3L_10032329_SNP [dm6]	A	G	1.899e^-4	0.802	INTRON dpr6
3R	14630815	3R_14630815_SNP [dm3] 3R_18805093_SNP [dm6]	G	T	1.904e^-4	0.802	UTR_3_PRIME CG18208
3R	10515286	3R_10515286_DEL [dm3] 3R_14689564_DEL [dm6]	GAAA	G	1.905e^-4	0.802	INTRON Meltrin
2R	8092784	2R_8092784_INS [dm3] 2R_12205279_INS [dm6]	A	AT	1.907e^-4	0.802	UPSTREAM CR45276 INTERGENIC
2L	9068089	2L_9068089_SNP [dm3] 2L_9068089_SNP [dm6]	C	T	1.907e^-4	0.802	INTRON CG31708
3L	3074590	3L_3074590_SNP [dm3] 3L_3074590_SNP [dm6]	A	G	1.908e^-4	0.802	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	7883523	2R_7883523_SNP [dm3] 2R_11996018_SNP [dm6]	A	C	1.911e^-4	0.802	EXON CR45319 & 1 other
2R	5652586	2R_5652586_SNP [dm3] 2R_9765081_SNP [dm6]	G	A	1.911e^-4	0.802	NON_SYNONYMOUS_CODING trpl
3L	18229034	3L_18229034_SNP [dm3] 3L_18235934_SNP [dm6]	A	G	1.918e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19409389	2L_19409389_SNP [dm3] 2L_19409389_SNP [dm6]	A	G	1.919e^-4	0.802	INTRON Pax	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15632953	3R_15632953_SNP [dm3] 3R_19807231_SNP [dm6]	A	T	1.922e^-4	0.802	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	6391073	2L_6391073_SNP [dm3] 2L_6391073_SNP [dm6]	T	C	1.923e^-4	0.802	INTRON CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19387091	2R_19387091_SNP [dm3] 2R_23499568_SNP [dm6]	A	G	1.929e^-4	0.802	UPSTREAM CG13558 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	25625470	3R_25625470_SNP [dm3] 3R_29799748_SNP [dm6]	C	T	1.930e^-4	0.802	START_GAINED Ice UTR_5_PRIME Ice UPSTREAM CG7837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
3R	4245526	3R_4245526_SNP [dm3] 3R_8419804_SNP [dm6]	C	A	1.939e^-4	0.802	DOWNSTREAM Obp85a INTRON CG45263
3R	6537736	3R_6537736_SNP [dm3] 3R_10712014_SNP [dm6]	G	A	1.944e^-4	0.802	UPSTREAM CG14689 INTERGENIC
2R	8078685	2R_8078685_SNP [dm3] 2R_12191180_SNP [dm6]	G	A	1.946e^-4	0.802	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3R	14677740	3R_14677740_SNP [dm3] 3R_18852018_SNP [dm6]	T	C	1.946e^-4	0.802	UPSTREAM CR45633 & 1 other INTERGENIC
2R	8121576	2R_8121576_SNP [dm3] 2R_12234071_SNP [dm6]	A	G	1.949e^-4	0.802	EXON CR44313
2L	1451794	2L_1451794_DEL [dm3] 2L_1451794_DEL [dm6]	AA	A	1.950e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8120064	2R_8120064_SNP [dm3] 2R_12232559_SNP [dm6]	T	C	1.951e^-4	0.802	INTERGENIC
3R	23184597	3R_23184597_SNP [dm3] 3R_27358875_SNP [dm6]	C	T	1.951e^-4	0.802	UPSTREAM CG42534 INTRON CG42534
3R	14157147	3R_14157147_SNP [dm3] 3R_18331425_SNP [dm6]	A	T	1.954e^-4	0.802	UTR_3_PRIME CG15803	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	8159743	2R_8159743_SNP [dm3] 2R_12272238_SNP [dm6]	A	T	1.958e^-4	0.802	INTRON Cam
3R	26569067	3R_26569067_SNP [dm3] 3R_30743345_SNP [dm6]	G	C	1.961e^-4	0.802	SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8584952	3L_8584952_SNP [dm3] 3L_8591852_SNP [dm6]	C	T	1.962e^-4	0.802	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5653774	2R_5653774_SNP [dm3] 2R_9766269_SNP [dm6]	T	A	1.975e^-4	0.802	UPSTREAM CR44205 DOWNSTREAM CG1688 & 1 other INTERGENIC
X	6439694	X_6439694_SNP [dm3] X_6545661_SNP [dm6]	T	A	1.978e^-4	0.802	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7870304	3R_7870304_SNP [dm3] 3R_12044582_SNP [dm6]	G	A	1.981e^-4	0.802	INTERGENIC
2L	19548987	2L_19548987_SNP [dm3] 2L_19548987_SNP [dm6]	C	A	1.982e^-4	0.802	UPSTREAM Tep4 INTRON Tep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	17824346	3L_17824346_SNP [dm3] 3L_17831246_SNP [dm6]	C	T	1.989e^-4	0.802	INTRON Grd
3R	8123460	3R_8123460_SNP [dm3] 3R_12297738_SNP [dm6]	T	C	1.992e^-4	0.802	INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27138260	3R_27138260_SNP [dm3] 3R_31312538_SNP [dm6]	C	T	1.995e^-4	0.802	INTRON CG34347
3R	26569066	3R_26569066_SNP [dm3] 3R_30743344_SNP [dm6]	C	A	1.995e^-4	0.802	NON_SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7704825	3L_7704825_SNP [dm3] 3L_7711725_SNP [dm6]	A	C	2.000e^-4	0.802	INTRON CG32373 & 1 other
3R	11293184	3R_11293184_SNP [dm3] 3R_15467462_SNP [dm6]	T	C	2.000e^-4	0.802	INTRON AdamTS-A
2L	14396746	2L_14396746_SNP [dm3] 2L_14396746_SNP [dm6]	T	C	2.019e^-4	0.805	INTRON elB
2R	1415570	2R_1415570_DEL [dm3] 2R_5528065_DEL [dm6]	AT	A	2.019e^-4	0.805	INTRON CG30438	transposable element FlyBase
3L	17177621	3L_17177621_SNP [dm3] 3L_17184521_SNP [dm6]	A	C	2.029e^-4	0.805	INTRON Rbp6
3L	6619735	3L_6619735_SNP [dm3] 3L_6626635_SNP [dm6]	C	A	2.035e^-4	0.805	INTRON GluRIA
X	13479491	X_13479491_SNP [dm3] X_13585458_SNP [dm6]	T	C	2.038e^-4	0.805	INTRON Tango13
X	6439773	X_6439773_SNP [dm3] X_6545740_SNP [dm6]	G	A	2.046e^-4	0.805	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9487681	2L_9487681_SNP [dm3] 2L_9487681_SNP [dm6]	T	C	2.047e^-4	0.805	INTERGENIC
3L	4840726	3L_4840726_SNP [dm3] 3L_4840726_SNP [dm6]	C	T	2.048e^-4	0.805	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	7532721	2L_7532721_SNP [dm3] 2L_7532721_SNP [dm6]	C	G	2.049e^-4	0.805	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18752325	2R_18752325_SNP [dm3] 2R_22864802_SNP [dm6]	T	C	2.058e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
X	8286987	X_8286987_SNP [dm3] X_8392954_SNP [dm6]	A	C	2.063e^-4	0.805	INTERGENIC
2L	10969754	2L_10969754_SNP [dm3] 2L_10969754_SNP [dm6]	G	A	2.072e^-4	0.805	NON_SYNONYMOUS_CODING CG33129 UPSTREAM YL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	15854133	2L_15854133_SNP [dm3] 2L_15854133_SNP [dm6]	A	G	2.082e^-4	0.805	START_GAINED Tektin-A UTR_5_PRIME Tektin-A UPSTREAM Tektin-A DOWNSTREAM CG13243
2R	8159731	2R_8159731_SNP [dm3] 2R_12272226_SNP [dm6]	A	G	2.082e^-4	0.805	INTRON Cam
3R	6542668	3R_6542668_SNP [dm3] 3R_10716946_SNP [dm6]	T	C	2.090e^-4	0.805	INTERGENIC
2R	8169877	2R_8169877_SNP [dm3] 2R_12282372_SNP [dm6]	A	C	2.104e^-4	0.805	INTRON CG42700
3R	14203757	3R_14203757_SNP [dm3] 3R_18378035_SNP [dm6]	G	A	2.106e^-4	0.805	DOWNSTREAM CG7675 INTERGENIC
2R	8122462	2R_8122462_SNP [dm3] 2R_12234957_SNP [dm6]	T	G	2.110e^-4	0.805	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8181445	2R_8181445_SNP [dm3] 2R_12293940_SNP [dm6]	G	C	2.110e^-4	0.805	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25991350	3R_25991350_SNP [dm3] 3R_30165628_SNP [dm6]	C	G	2.114e^-4	0.805	NON_SYNONYMOUS_CODING CG31030	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	6439781	X_6439781_SNP [dm3] X_6545748_SNP [dm6]	G	C	2.115e^-4	0.805	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12458612	3L_12458612_SNP [dm3] 3L_12465512_SNP [dm6]	G	A	2.138e^-4	0.805	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	19317608	3R_19317608_SNP [dm3] 3R_23491886_SNP [dm6]	G	A	2.139e^-4	0.805	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12371136	2L_12371136_SNP [dm3] 2L_12371136_SNP [dm6]	T	G	2.144e^-4	0.805	INTRON bru-2
3R	13802228	3R_13802228_SNP [dm3] 3R_17976506_SNP [dm6]	G	C	2.146e^-4	0.805	INTRON cpo
2L	11051497	2L_11051497_SNP [dm3] 2L_11051497_SNP [dm6]	G	A	2.148e^-4	0.805	INTRON Samuel
2R	13505922	2R_13505922_SNP [dm3] 2R_17618417_SNP [dm6]	C	T	2.160e^-4	0.805	UPSTREAM CG44403 INTRON CG10936
3R	16899274	3R_16899274_SNP [dm3] 3R_21073552_SNP [dm6]	A	G	2.162e^-4	0.805	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13872191	3R_13872191_SNP [dm3] 3R_18046469_SNP [dm6]	A	T	2.165e^-4	0.805	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
2L	15947100	2L_15947100_SNP [dm3] 2L_15947100_SNP [dm6]	C	T	2.166e^-4	0.805	INTRON beat-Ib
3R	13416083	3R_13416083_SNP [dm3] 3R_17590361_SNP [dm6]	G	A	2.170e^-4	0.805	INTERGENIC
3L	3074505	3L_3074505_SNP [dm3] 3L_3074505_SNP [dm6]	T	C	2.179e^-4	0.805	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8154463	2R_8154463_SNP [dm3] 2R_12266958_SNP [dm6]	T	G	2.179e^-4	0.805	INTRON Cam
2R	8117907	2R_8117907_SNP [dm3] 2R_12230402_SNP [dm6]	T	G	2.182e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8164062	2R_8164062_SNP [dm3] 2R_12276557_SNP [dm6]	A	T	2.187e^-4	0.805	UTR_3_PRIME Cam
2L	14488453	2L_14488453_SNP [dm3] 2L_14488453_SNP [dm6]	C	G	2.195e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
2R	8068377	2R_8068377_SNP [dm3] 2R_12180872_SNP [dm6]	G	T	2.195e^-4	0.805	NON_SYNONYMOUS_CODING wash UPSTREAM CG8860	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13758476	2L_13758476_SNP [dm3] 2L_13758476_SNP [dm6]	C	T	2.197e^-4	0.805	INTRON TM9SF4
3R	14030411	3R_14030411_SNP [dm3] 3R_18204689_SNP [dm6]	G	A	2.200e^-4	0.805	INTRON CG7985
3R	16897952	3R_16897952_SNP [dm3] 3R_21072230_SNP [dm6]	T	C	2.200e^-4	0.805	INTRON r-l	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	16429690	X_16429690_SNP [dm3] X_16535657_SNP [dm6]	C	T	2.207e^-4	0.805	INTERGENIC
3R	16062752	3R_16062752_SNP [dm3] 3R_20237030_SNP [dm6]	T	A	2.209e^-4	0.805	INTRON Nlg4
2L	13754815	2L_13754815_SNP [dm3] 2L_13754815_SNP [dm6]	A	T	2.209e^-4	0.805	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
2R	6091749	2R_6091749_SNP [dm3] 2R_10204244_SNP [dm6]	T	G	2.214e^-4	0.805	UTR_3_PRIME Hr46
2R	8963019	2R_8963019_SNP [dm3] 2R_13075514_SNP [dm6]	C	T	2.215e^-4	0.805	INTRON Drl-2
2L	11468264	2L_11468264_SNP [dm3] 2L_11468264_SNP [dm6]	A	G	2.217e^-4	0.805	INTERGENIC
2R	1373634	2R_1373634_SNP [dm3] 2R_5486129_SNP [dm6]	C	T	2.219e^-4	0.805	INTRON CG30440
3L	18225305	3L_18225305_SNP [dm3] 3L_18232205_SNP [dm6]	A	G	2.220e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6511285	3L_6511285_SNP [dm3] 3L_6518185_SNP [dm6]	T	G	2.220e^-4	0.805	INTRON sfl	TF binding site mE1_TFBS_cad
2L	14399451	2L_14399451_SNP [dm3] 2L_14399451_SNP [dm6]	C	T	2.223e^-4	0.805	INTRON elB
3L	17458316	3L_17458316_SNP [dm3] 3L_17465216_SNP [dm6]	C	A	2.231e^-4	0.806	UPSTREAM CG7603 INTERGENIC
X	12210598	X_12210598_SNP [dm3] X_12316565_SNP [dm6]	C	G	2.239e^-4	0.806	INTRON Ten-a
3L	10812282	3L_10812282_SNP [dm3] 3L_10819182_SNP [dm6]	G	A	2.248e^-4	0.806	INTERGENIC
2R	8174383	2R_8174383_SNP [dm3] 2R_12286878_SNP [dm6]	A	G	2.249e^-4	0.806	INTRON CG42700
3R	10245209	3R_10245209_SNP [dm3] 3R_14419487_SNP [dm6]	G	T	2.250e^-4	0.806	INTRON cv-c & 1 other
2L	15946844	2L_15946844_SNP [dm3] 2L_15946844_SNP [dm6]	T	A	2.250e^-4	0.806	INTRON beat-Ib
2R	8096216	2R_8096216_SNP [dm3] 2R_12208711_SNP [dm6]	G	A	2.256e^-4	0.806	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8127584	2R_8127584_SNP [dm3] 2R_12240079_SNP [dm6]	T	G	2.269e^-4	0.809	UPSTREAM CG13170 INTERGENIC
2R	12411234	2R_12411234_SNP [dm3] 2R_16523729_SNP [dm6]	A	G	2.277e^-4	0.809	INTRON Sema-2a
2L	15946880	2L_15946880_SNP [dm3] 2L_15946880_SNP [dm6]	C	A	2.280e^-4	0.809	INTRON beat-Ib
2L	7515740	2L_7515740_SNP [dm3] 2L_7515740_SNP [dm6]	C	A	2.282e^-4	0.809	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_D
2L	9409270	2L_9409270_SNP [dm3] 2L_9409270_SNP [dm6]	G	A	2.291e^-4	0.809	INTRON Shawl
3L	19096461	3L_19096461_DEL [dm3] 3L_19103361_DEL [dm6]	ATGGCAAAACCGA...	A	2.293e^-4	0.809	INTERGENIC
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	2.295e^-4	0.809	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12663669	2R_12663669_SNP [dm3] 2R_16776164_SNP [dm6]	T	G	2.304e^-4	0.809	DOWNSTREAM Arp53D INTERGENIC
3R	26127018	3R_26127018_SNP [dm3] 3R_30301296_SNP [dm6]	C	A	2.305e^-4	0.809	INTRON hdc
3L	22203803	3L_22203803_SNP [dm3] 3L_22210703_SNP [dm6]	C	G	2.315e^-4	0.809	INTRON olf413	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	9956528	3L_9956528_SNP [dm3] 3L_9963428_SNP [dm6]	C	T	2.322e^-4	0.809	INTRON CG34356
2L	16371345	2L_16371345_SNP [dm3] 2L_16371345_SNP [dm6]	G	A	2.327e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2R	8127246	2R_8127246_SNP [dm3] 2R_12239741_SNP [dm6]	G	A	2.332e^-4	0.809	UPSTREAM CG13170 INTERGENIC
2R	8177570	2R_8177570_SNP [dm3] 2R_12290065_SNP [dm6]	A	G	2.338e^-4	0.809	UPSTREAM CG42700 INTRON CG42700
2R	13850315	2R_13850315_SNP [dm3] 2R_17962810_SNP [dm6]	G	A	2.340e^-4	0.809	INTERGENIC
2L	12397982	2L_12397982_SNP [dm3] 2L_12397982_SNP [dm6]	T	C	2.345e^-4	0.809	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
X	13322129	X_13322129_SNP [dm3] X_13428096_SNP [dm6]	A	T	2.347e^-4	0.809	INTERGENIC
2R	11295235	2R_11295235_SNP [dm3] 2R_15407730_SNP [dm6]	A	C	2.352e^-4	0.809	INTRON CG43729
2L	15868973	2L_15868973_SNP [dm3] 2L_15868973_SNP [dm6]	G	A	2.357e^-4	0.809	INTERGENIC
2L	20621551	2L_20621551_SNP [dm3] 2L_20621551_SNP [dm6]	A	G	2.362e^-4	0.809	INTRON CR44909
3L	12462225	3L_12462225_SNP [dm3] 3L_12469125_SNP [dm6]	C	A	2.368e^-4	0.809	UTR_3_PRIME CG32102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3L	17183550	3L_17183550_SNP [dm3] 3L_17190450_SNP [dm6]	G	A	2.371e^-4	0.809	INTRON Rbp6
3R	24009743	3R_24009743_SNP [dm3] 3R_28184021_SNP [dm6]	A	G	2.378e^-4	0.809	INTRON CG34354
3R	26569833	3R_26569833_SNP [dm3] 3R_30744111_SNP [dm6]	G	A	2.378e^-4	0.809	UTR_3_PRIME CG15543 DOWNSTREAM Npc2g & 1 other
3L	12172465	3L_12172465_SNP [dm3] 3L_12179365_SNP [dm6]	A	G	2.385e^-4	0.809	UPSTREAM CAH2 INTRON CAH2
3R	6594384	3R_6594384_SNP [dm3] 3R_10768662_SNP [dm6]	T	G	2.386e^-4	0.809	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta DOWNSTREAM CG45076	TF binding site mE1_TFBS_chinmo
2R	10679272	2R_10679272_SNP [dm3] 2R_14791767_SNP [dm6]	C	T	2.388e^-4	0.809	INTRON kn	TF binding site BDTNP1_TFBS_dl
3R	25160538	3R_25160538_INS [dm3] 3R_29334816_INS [dm6]	T	TT	2.390e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8114301	2R_8114301_SNP [dm3] 2R_12226796_SNP [dm6]	T	G	2.399e^-4	0.809	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
2L	13758481	2L_13758481_SNP [dm3] 2L_13758481_SNP [dm6]	G	A	2.402e^-4	0.809	INTRON TM9SF4
3L	10867767	3L_10867767_SNP [dm3] 3L_10874667_SNP [dm6]	A	T	2.405e^-4	0.809	UTR_3_PRIME tna DOWNSTREAM tna	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18151045	3L_18151045_SNP [dm3] 3L_18157945_SNP [dm6]	A	T	2.408e^-4	0.809	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12708098	2R_12708098_SNP [dm3] 2R_16820593_SNP [dm6]	T	C	2.410e^-4	0.809	INTERGENIC
2R	8094593	2R_8094593_SNP [dm3] 2R_12207088_SNP [dm6]	A	C	2.415e^-4	0.809	EXON CR45276	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16293581	2R_16293581_SNP [dm3] 2R_20406076_SNP [dm6]	G	A	2.416e^-4	0.809	INTERGENIC
3R	16899071	3R_16899071_SNP [dm3] 3R_21073349_SNP [dm6]	G	T	2.422e^-4	0.809	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	6981149	2R_6981149_SNP [dm3] 2R_11093644_SNP [dm6]	T	A	2.439e^-4	0.809	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11235986	X_11235986_SNP [dm3] X_11341953_SNP [dm6]	A	C	2.448e^-4	0.809	INTRON CG34348	TF binding site BDTNP1_TFBS_dl
2L	18773629	2L_18773629_SNP [dm3] 2L_18773629_SNP [dm6]	T	A	2.449e^-4	0.809	INTRON ham EXON CR43804
3L	8568403	3L_8568403_SNP [dm3] 3L_8575303_SNP [dm6]	G	T	2.454e^-4	0.809	NON_SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16100939	2L_16100939_SNP [dm3] 2L_16100939_SNP [dm6]	A	G	2.459e^-4	0.809	INTERGENIC
2R	8176555	2R_8176555_SNP [dm3] 2R_12289050_SNP [dm6]	A	C	2.463e^-4	0.809	INTRON CG42700
2R	8157497	2R_8157497_SNP [dm3] 2R_12269992_SNP [dm6]	A	T	2.466e^-4	0.809	INTRON Cam
3R	13866854	3R_13866854_SNP [dm3] 3R_18041132_SNP [dm6]	G	T	2.467e^-4	0.809	INTERGENIC
X	3422445	X_3422445_SNP [dm3] X_3528412_SNP [dm6]	G	A	2.469e^-4	0.809	INTRON CG32791
3R	21675754	3R_21675754_SNP [dm3] 3R_25850032_SNP [dm6]	A	C	2.479e^-4	0.809	DOWNSTREAM CG14545 INTERGENIC
2R	12024685	2R_12024685_SNP [dm3] 2R_16137180_SNP [dm6]	A	G	2.480e^-4	0.809	INTRON spin
3R	7727598	3R_7727598_SNP [dm3] 3R_11901876_SNP [dm6]	T	C	2.482e^-4	0.809	SYNONYMOUS_CODING Cad87A
3L	17824344	3L_17824344_SNP [dm3] 3L_17831244_SNP [dm6]	T	A	2.485e^-4	0.809	INTRON Grd
3L	6629039	3L_6629039_SNP [dm3] 3L_6635939_SNP [dm6]	A	G	2.487e^-4	0.809	DOWNSTREAM GluRIA INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16913209	3R_16913209_SNP [dm3] 3R_21087487_SNP [dm6]	A	G	2.489e^-4	0.809	SYNONYMOUS_CODING RhoGAP93B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	8114661	2R_8114661_SNP [dm3] 2R_12227156_SNP [dm6]	C	T	2.489e^-4	0.809	UPSTREAM CG8854 INTRON CG8854
3R	13907160	3R_13907160_SNP [dm3] 3R_18081438_SNP [dm6]	C	T	2.498e^-4	0.81	SYNONYMOUS_CODING CG14317	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24954614	3R_24954614_SNP [dm3] 3R_29128892_SNP [dm6]	A	T	2.501e^-4	0.81	DOWNSTREAM CG11880 INTRON dgt6	TF binding site mE1_TFBS_cad
2L	16330043	2L_16330043_SNP [dm3] 2L_16330043_SNP [dm6]	A	T	2.513e^-4	0.812	UPSTREAM mRpL4 DOWNSTREAM CG31817 INTRON CG4440	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8090624	2R_8090624_SNP [dm3] 2R_12203119_SNP [dm6]	G	A	2.515e^-4	0.812	INTERGENIC
3R	20402455	3R_20402455_SNP [dm3] 3R_24576733_SNP [dm6]	G	T	2.525e^-4	0.812	INTRON CG13624
2L	15435239	2L_15435239_SNP [dm3] 2L_15435239_SNP [dm6]	T	C	2.529e^-4	0.812	UTR_3_PRIME CG4161 UPSTREAM CR44861
X	16429691	X_16429691_SNP [dm3] X_16535658_SNP [dm6]	T	A	2.529e^-4	0.812	INTERGENIC
3R	7727619	3R_7727619_SNP [dm3] 3R_11901897_SNP [dm6]	G	A	2.549e^-4	0.817	SYNONYMOUS_CODING Cad87A
3R	16869629	3R_16869629_SNP [dm3] 3R_21043907_SNP [dm6]	T	C	2.562e^-4	0.817	UPSTREAM CG12278 DOWNSTREAM CG31189 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	23224335	3R_23224335_SNP [dm3] 3R_27398613_SNP [dm6]	A	G	2.566e^-4	0.817	INTRON side
2R	8159740	2R_8159740_DEL [dm3] 2R_12272235_DEL [dm6]	TT	T	2.568e^-4	0.817	INTRON Cam
3R	11708133	3R_11708133_SNP [dm3] 3R_15882411_SNP [dm6]	T	C	2.575e^-4	0.817	INTERGENIC
3R	25216302	3R_25216302_SNP [dm3] 3R_29390580_SNP [dm6]	A	T	2.576e^-4	0.817	INTRON Ptp99A
3R	16892965	3R_16892965_SNP [dm3] 3R_21067243_SNP [dm6]	C	T	2.576e^-4	0.817	INTRON AnxB9
2L	8629608	2L_8629608_SNP [dm3] 2L_8629608_SNP [dm6]	T	C	2.582e^-4	0.818	INTRON Sema-1a
3R	19922331	3R_19922331_SNP [dm3] 3R_24096609_SNP [dm6]	G	A	2.591e^-4	0.818	INTRON 4EHP
2R	11610013	2R_11610013_SNP [dm3] 2R_15722508_SNP [dm6]	T	C	2.594e^-4	0.818	INTERGENIC
3L	9298916	3L_9298916_SNP [dm3] 3L_9305816_SNP [dm6]	C	T	2.600e^-4	0.818	INTERGENIC
2L	9407824	2L_9407824_SNP [dm3] 2L_9407824_SNP [dm6]	G	A	2.603e^-4	0.818	INTRON Shawl
3R	14203834	3R_14203834_SNP [dm3] 3R_18378112_SNP [dm6]	C	T	2.604e^-4	0.818	DOWNSTREAM CG7675 INTERGENIC	TF binding site mE1_TFBS_cad
3R	6540033	3R_6540033_SNP [dm3] 3R_10714311_SNP [dm6]	C	G	2.630e^-4	0.82	UPSTREAM CG4073 INTERGENIC
2R	12411223	2R_12411223_SNP [dm3] 2R_16523718_SNP [dm6]	C	T	2.633e^-4	0.82	INTRON Sema-2a
3R	12140622	3R_12140622_SNP [dm3] 3R_16314900_SNP [dm6]	A	G	2.635e^-4	0.82	SYNONYMOUS_CODING Sulf1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	10590397	X_10590397_DEL [dm3] X_10696364_DEL [dm6]	ATGTTGCGCA	A	2.639e^-4	0.82	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	649678	3L_649678_SNP [dm3] 3L_649678_SNP [dm6]	C	T	2.639e^-4	0.82	INTRON Gale	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	27143473	3R_27143473_SNP [dm3] 3R_31317751_SNP [dm6]	T	C	2.643e^-4	0.82	INTRON CG34347
X	2697968	X_2697968_SNP [dm3] X_2803935_SNP [dm6]	A	G	2.645e^-4	0.82	INTRON kirre
3L	12443018	3L_12443018_SNP [dm3] 3L_12449918_SNP [dm6]	T	C	2.646e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	27138188	3R_27138188_SNP [dm3] 3R_31312466_SNP [dm6]	C	G	2.656e^-4	0.82	INTRON CG34347
3R	15222442	3R_15222442_SNP [dm3] 3R_19396720_SNP [dm6]	T	A	2.666e^-4	0.82	DOWNSTREAM CG31244 INTRON Ino80
3L	2541577	3L_2541577_SNP [dm3] 3L_2541577_SNP [dm6]	T	A	2.669e^-4	0.82	INTRON Spn
2R	8166706	2R_8166706_SNP [dm3] 2R_12279201_SNP [dm6]	G	A	2.675e^-4	0.82	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3L	12182730	3L_12182730_SNP [dm3] 3L_12189630_SNP [dm6]	A	G	2.675e^-4	0.82	NON_SYNONYMOUS_CODING Est-6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6517170	3R_6517170_SNP [dm3] 3R_10691448_SNP [dm6]	G	A	2.677e^-4	0.82	SPLICE_SITE_REGION Skeletor SYNONYMOUS_CODING Skeletor UTR_5_PRIME Skeletor DOWNSTREAM Skeletor
3R	7734348	3R_7734348_SNP [dm3] 3R_11908626_SNP [dm6]	T	C	2.686e^-4	0.82	INTRON Cad87A
3L	12950882	3L_12950882_SNP [dm3] 3L_12957782_SNP [dm6]	A	T	2.688e^-4	0.82	INTERGENIC
3R	19315719	3R_19315719_SNP [dm3] 3R_23489997_SNP [dm6]	C	G	2.689e^-4	0.82	DOWNSTREAM Ir94h INTERGENIC
X	6439746	X_6439746_SNP [dm3] X_6545713_SNP [dm6]	A	G	2.702e^-4	0.82	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6151265	2R_6151265_INS [dm3] 2R_10263760_INS [dm6]	A	ACAGCA	2.703e^-4	0.82	EXON CR30009
2L	5605509	2L_5605509_SNP [dm3] 2L_5605509_SNP [dm6]	C	T	2.711e^-4	0.82	INTRON CG14010
X	2615357	X_2615357_SNP [dm3] X_2721324_SNP [dm6]	T	A	2.711e^-4	0.82	NON_SYNONYMOUS_CODING fs_1_Yb UPSTREAM CG2701	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	14677663	3R_14677663_SNP [dm3] 3R_18851941_SNP [dm6]	T	A	2.722e^-4	0.82	UPSTREAM CR45633 & 1 other INTERGENIC
2R	12533923	2R_12533923_SNP [dm3] 2R_16646418_SNP [dm6]	A	T	2.733e^-4	0.82	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3419747	3L_3419747_SNP [dm3] 3L_3419747_SNP [dm6]	C	A	2.734e^-4	0.82	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25171037	3R_25171037_SNP [dm3] 3R_29345315_SNP [dm6]	C	G	2.744e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2R	8108447	2R_8108447_SNP [dm3] 2R_12220942_SNP [dm6]	C	T	2.746e^-4	0.82	INTERGENIC
X	17845068	X_17845068_SNP [dm3] X_17951035_SNP [dm6]	A	G	2.750e^-4	0.82	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8935604	2R_8935604_SNP [dm3] 2R_13048099_SNP [dm6]	A	G	2.757e^-4	0.82	UPSTREAM CG13323 INTERGENIC
3R	26185493	3R_26185493_SNP [dm3] 3R_30359771_SNP [dm6]	A	C	2.758e^-4	0.82	INTRON hdc
3L	4911847	3L_4911847_SNP [dm3] 3L_4911847_SNP [dm6]	T	A	2.765e^-4	0.82	INTRON Rh50
3L	10027079	3L_10027079_SNP [dm3] 3L_10033979_SNP [dm6]	G	C	2.765e^-4	0.82	INTRON dpr6
X	11578971	X_11578971_SNP [dm3] X_11684938_SNP [dm6]	A	T	2.769e^-4	0.82	INTRON bif
X	14927599	X_14927599_SNP [dm3] X_15033566_SNP [dm6]	G	C	2.770e^-4	0.82	INTRON hiw & 1 other
3L	1061298	3L_1061298_SNP [dm3] 3L_1061298_SNP [dm6]	T	G	2.771e^-4	0.82	INTRON bab1
3L	18231754	3L_18231754_SNP [dm3] 3L_18238654_SNP [dm6]	G	C	2.774e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	2.777e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19922284	3R_19922284_SNP [dm3] 3R_24096562_SNP [dm6]	A	G	2.789e^-4	0.82	INTRON 4EHP
3R	13415359	3R_13415359_SNP [dm3] 3R_17589637_SNP [dm6]	G	A	2.789e^-4	0.82	INTERGENIC
3L	18117510	3L_18117510_SNP [dm3] 3L_18124410_SNP [dm6]	G	A	2.798e^-4	0.82	INTERGENIC
2R	10898637	2R_10898637_SNP [dm3] 2R_15011132_SNP [dm6]	T	A	2.800e^-4	0.82	UPSTREAM hbs INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3R	11000246	3R_11000246_SNP [dm3] 3R_15174524_SNP [dm6]	C	T	2.800e^-4	0.82	DOWNSTREAM Mf INTRON Mf & 1 other
2L	13754788	2L_13754788_SNP [dm3] 2L_13754788_SNP [dm6]	A	C	2.801e^-4	0.82	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
3R	10296576	3R_10296576_SNP [dm3] 3R_14470854_SNP [dm6]	C	T	2.805e^-4	0.82	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8120262	2R_8120262_SNP [dm3] 2R_12232757_SNP [dm6]	T	G	2.806e^-4	0.82	INTERGENIC
3R	26569837	3R_26569837_SNP [dm3] 3R_30744115_SNP [dm6]	T	G	2.809e^-4	0.82	UTR_3_PRIME CG15543 DOWNSTREAM Npc2g & 1 other
2R	8933977	2R_8933977_SNP [dm3] 2R_13046472_SNP [dm6]	G	A	2.813e^-4	0.82	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
X	9781983	X_9781983_INS [dm3] X_9887950_INS [dm6]	A	AATATA	2.820e^-4	0.82	DOWNSTREAM CG15249 INTERGENIC
X	9801771	X_9801771_DEL [dm3] X_9907738_DEL [dm6]	CC	C	2.821e^-4	0.82	DOWNSTREAM CG1986 INTERGENIC
3L	17824358	3L_17824358_SNP [dm3] 3L_17831258_SNP [dm6]	C	T	2.825e^-4	0.82	INTRON Grd
2L	19412495	2L_19412495_SNP [dm3] 2L_19412495_SNP [dm6]	T	C	2.842e^-4	0.822	UPSTREAM Pax INTRON Pax
2R	8089676	2R_8089676_SNP [dm3] 2R_12202171_SNP [dm6]	A	T	2.852e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8175237	2R_8175237_SNP [dm3] 2R_12287732_SNP [dm6]	T	G	2.855e^-4	0.822	INTRON CG42700
2L	16377045	2L_16377045_SNP [dm3] 2L_16377045_SNP [dm6]	A	G	2.856e^-4	0.822	INTERGENIC
3L	649681	3L_649681_SNP [dm3] 3L_649681_SNP [dm6]	G	A	2.864e^-4	0.822	INTRON Gale	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8117941	2R_8117941_SNP [dm3] 2R_12230436_SNP [dm6]	A	C	2.865e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	11425576	X_11425576_SNP [dm3] X_11531543_SNP [dm6]	T	C	2.868e^-4	0.822	INTRON Drak
3L	17824347	3L_17824347_SNP [dm3] 3L_17831247_SNP [dm6]	T	A	2.873e^-4	0.822	INTRON Grd
3L	2541597	3L_2541597_SNP [dm3] 3L_2541597_SNP [dm6]	T	A	2.874e^-4	0.822	INTRON Spn
3L	649597	3L_649597_SNP [dm3] 3L_649597_SNP [dm6]	T	C	2.876e^-4	0.822	INTRON Gale	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
3R	14157177	3R_14157177_SNP [dm3] 3R_18331455_SNP [dm6]	A	G	2.887e^-4	0.823	UTR_3_PRIME CG15803	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	8097551	2R_8097551_SNP [dm3] 2R_12210046_SNP [dm6]	G	T	2.889e^-4	0.823	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6457491	3R_6457491_SNP [dm3] 3R_10631769_SNP [dm6]	A	G	2.899e^-4	0.823	INTRON hth	TF binding site mE1_TFBS_cad
2L	15914696	2L_15914696_SNP [dm3] 2L_15914696_SNP [dm6]	C	T	2.902e^-4	0.823	INTRON beat-Ib
X	9780055	X_9780055_DEL [dm3] X_9886022_DEL [dm6]	AA	A	2.907e^-4	0.823	DOWNSTREAM CG9691 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5543612	3L_5543612_SNP [dm3] 3L_5550512_SNP [dm6]	C	T	2.914e^-4	0.823	INTRON CG10625
3L	12620149	3L_12620149_SNP [dm3] 3L_12627049_SNP [dm6]	A	G	2.915e^-4	0.823	UPSTREAM CR32111 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7533299	2L_7533299_SNP [dm3] 2L_7533299_SNP [dm6]	G	A	2.915e^-4	0.823	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15882121	3L_15882121_SNP [dm3] 3L_15889021_SNP [dm6]	T	C	2.918e^-4	0.823	INTRON pHCl
3L	1617664	3L_1617664_SNP [dm3] 3L_1617664_SNP [dm6]	C	G	2.945e^-4	0.827	UPSTREAM ABCB7 & 1 other DOWNSTREAM CG33791 & 1 other INTRON CG13926	TF binding site mE1_TFBS_HSA
2L	5695604	2L_5695604_SNP [dm3] 2L_5695604_SNP [dm6]	T	A	2.946e^-4	0.827	INTERGENIC
2L	13665220	2L_13665220_SNP [dm3] 2L_13665220_SNP [dm6]	G	A	2.952e^-4	0.827	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9226164	3L_9226164_SNP [dm3] 3L_9233064_SNP [dm6]	C	T	2.952e^-4	0.827	INTERGENIC
3L	12458614	3L_12458614_SNP [dm3] 3L_12465514_SNP [dm6]	A	C	2.953e^-4	0.827	INTRON eyg	TF binding site mE1_TFBS_chinmo
3L	1141718	3L_1141718_SNP [dm3] 3L_1141718_SNP [dm6]	C	T	2.964e^-4	0.827	UTR_3_PRIME bab2
3L	6292613	3L_6292613_SNP [dm3] 3L_6299513_SNP [dm6]	T	A	2.965e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6629037	3L_6629037_SNP [dm3] 3L_6635937_SNP [dm6]	A	G	2.968e^-4	0.827	DOWNSTREAM GluRIA INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8743968	3L_8743968_DEL [dm3] 3L_8750868_DEL [dm6]	CA	C	2.973e^-4	0.827	DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12781780	2R_12781780_SNP [dm3] 2R_16894275_SNP [dm6]	T	A	2.979e^-4	0.827	START_GAINED CG8910 UTR_5_PRIME CG8910 DOWNSTREAM mir-990
2R	8174456	2R_8174456_SNP [dm3] 2R_12286951_SNP [dm6]	C	T	2.980e^-4	0.827	INTRON CG42700
3R	16860417	3R_16860417_SNP [dm3] 3R_21034695_SNP [dm6]	G	A	3.004e^-4	0.828	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
3L	15322627	3L_15322627_SNP [dm3] 3L_15329527_SNP [dm6]	T	G	3.004e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	13856908	3R_13856908_SNP [dm3] 3R_18031186_SNP [dm6]	T	C	3.005e^-4	0.828	INTERGENIC
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	3.009e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1327966	3L_1327966_SNP [dm3] 3L_1327966_SNP [dm6]	C	T	3.012e^-4	0.828	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_chinmo
3R	14537363	3R_14537363_SNP [dm3] 3R_18711641_SNP [dm6]	A	G	3.013e^-4	0.828	INTRON VAChT & 1 other
2R	14615414	2R_14615414_SNP [dm3] 2R_18727909_SNP [dm6]	C	T	3.015e^-4	0.828	UTR_3_PRIME List INTRON Hs3st-A
3L	3015298	3L_3015298_SNP [dm3] 3L_3015298_SNP [dm6]	A	T	3.023e^-4	0.828	DOWNSTREAM CG32487 INTRON CG32488
3L	17824349	3L_17824349_SNP [dm3] 3L_17831249_SNP [dm6]	A	T	3.026e^-4	0.828	INTRON Grd
3R	14583518	3R_14583518_SNP [dm3] 3R_18757796_SNP [dm6]	T	A	3.028e^-4	0.828	SYNONYMOUS_CODING CG14299	TF binding site mE1_TFBS_sens
3L	3421065	3L_3421065_SNP [dm3] 3L_3421065_SNP [dm6]	T	C	3.039e^-4	0.829	INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14552827	3R_14552827_INS [dm3] 3R_18727105_INS [dm6]	G	GGTTTATAC	3.042e^-4	0.829	UPSTREAM CG7714 DOWNSTREAM CG7715 INTRON Cha
2R	8176345	2R_8176345_SNP [dm3] 2R_12288840_SNP [dm6]	A	G	3.051e^-4	0.829	INTRON CG42700
2L	13978668	2L_13978668_SNP [dm3] 2L_13978668_SNP [dm6]	T	A	3.059e^-4	0.829	SYNONYMOUS_CODING Cyp28a5
3R	9950506	3R_9950506_SNP [dm3] 3R_14124784_SNP [dm6]	G	A	3.063e^-4	0.829	SYNONYMOUS_CODING 140up DOWNSTREAM twf
2L	16444548	2L_16444548_SNP [dm3] 2L_16444548_SNP [dm6]	C	A	3.065e^-4	0.829	UPSTREAM Idgf1 INTRON CG5888	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	17377853	X_17377853_SNP [dm3] X_17483820_SNP [dm6]	T	G	3.065e^-4	0.829	INTRON CG43658	TF binding site BDTNP1_TFBS_dl
2R	12411228	2R_12411228_SNP [dm3] 2R_16523723_SNP [dm6]	C	A	3.067e^-4	0.829	INTRON Sema-2a
2L	11459477	2L_11459477_SNP [dm3] 2L_11459477_SNP [dm6]	C	T	3.072e^-4	0.829	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	18496350	3L_18496350_SNP [dm3] 3L_18503250_SNP [dm6]	C	A	3.075e^-4	0.829	UPSTREAM AstC-R2 INTERGENIC
2L	11442474	2L_11442474_SNP [dm3] 2L_11442474_SNP [dm6]	C	A	3.109e^-4	0.834	INTRON salm
2L	6391094	2L_6391094_SNP [dm3] 2L_6391094_SNP [dm6]	C	A	3.113e^-4	0.834	INTRON CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14565104	X_14565104_SNP [dm3] X_14671071_SNP [dm6]	A	C	3.114e^-4	0.834	INTERGENIC
2L	5464421	2L_5464421_DEL [dm3] 2L_5464421_DEL [dm6]	ATTACC	A	3.115e^-4	0.834	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA
2L	5464431	2L_5464431_DEL [dm3] 2L_5464431_DEL [dm6]	CATAT	TGGC	3.115e^-4	0.834	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA
2L	5114909	2L_5114909_SNP [dm3] 2L_5114909_SNP [dm6]	G	A	3.125e^-4	0.834	INTRON Msp300
2R	8538174	2R_8538174_SNP [dm3] 2R_12650669_SNP [dm6]	G	T	3.126e^-4	0.834	DOWNSTREAM CG8778 INTERGENIC
3L	12940625	3L_12940625_SNP [dm3] 3L_12947525_SNP [dm6]	G	A	3.133e^-4	0.834	INTERGENIC	TF binding site mE1_TFBS_inv
2L	19590030	2L_19590030_DEL [dm3] 2L_19590030_DEL [dm6]	TC	T	3.141e^-4	0.834	INTRON Lar
X	6439783	X_6439783_SNP [dm3] X_6545750_SNP [dm6]	G	T	3.146e^-4	0.834	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15536705	X_15536705_SNP [dm3] X_15642672_SNP [dm6]	T	C	3.148e^-4	0.834	UPSTREAM CR44893 INTERGENIC
3L	18211456	3L_18211456_SNP [dm3] 3L_18218356_SNP [dm6]	A	G	3.148e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14537760	3R_14537760_SNP [dm3] 3R_18712038_SNP [dm6]	T	A	3.153e^-4	0.834	INTRON VAChT & 1 other	TF binding site mE1_TFBS_Trl
3L	12722162	3L_12722162_SNP [dm3] 3L_12729062_SNP [dm6]	T	C	3.159e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11442523	2L_11442523_SNP [dm3] 2L_11442523_SNP [dm6]	C	T	3.170e^-4	0.834	INTRON salm
3L	3719421	3L_3719421_SNP [dm3] 3L_3719421_SNP [dm6]	T	C	3.176e^-4	0.834	INTRON CG32264	TF binding site mE1_TFBS_cad
3R	12195441	3R_12195441_SNP [dm3] 3R_16369719_SNP [dm6]	A	G	3.177e^-4	0.834	INTRON CG10317	regulatory region REDfly_CRMs
3R	8226635	3R_8226635_SNP [dm3] 3R_12400913_SNP [dm6]	T	C	3.181e^-4	0.834	SYNONYMOUS_CODING lig3 INTRON CG34402	TF binding site mE1_TFBS_sens
2L	8168190	2L_8168190_SNP [dm3] 2L_8168190_SNP [dm6]	A	G	3.187e^-4	0.834	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8117922	2R_8117922_SNP [dm3] 2R_12230417_SNP [dm6]	A	C	3.192e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	5976584	2R_5976584_DEL [dm3] 2R_10089079_DEL [dm6]	CACA	C	3.194e^-4	0.834	INTRON CG2269
3R	9949522	3R_9949522_SNP [dm3] 3R_14123800_SNP [dm6]	G	T	3.195e^-4	0.834	DOWNSTREAM 140up INTRON twf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2581730	3L_2581730_SNP [dm3] 3L_2581730_SNP [dm6]	C	A	3.202e^-4	0.834	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16744674	2L_16744674_SNP [dm3] 2L_16744674_SNP [dm6]	C	G	3.203e^-4	0.834	INTRON CG17912	TF binding site BDTNP1_TFBS_dl
3L	1354785	3L_1354785_SNP [dm3] 3L_1354785_SNP [dm6]	A	G	3.209e^-4	0.835	INTRON Ptp61F
3L	7739666	3L_7739666_SNP [dm3] 3L_7746566_SNP [dm6]	A	T	3.220e^-4	0.835	UPSTREAM CG13685 INTRON CG32373
2L	14423135	2L_14423135_SNP [dm3] 2L_14423135_SNP [dm6]	G	A	3.223e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14928006	2R_14928006_DEL [dm3] 2R_19040501_DEL [dm6]	GG	G	3.226e^-4	0.835	INTERGENIC
2R	8154459	2R_8154459_SNP [dm3] 2R_12266954_SNP [dm6]	A	C	3.227e^-4	0.835	INTRON Cam
3L	6619755	3L_6619755_SNP [dm3] 3L_6626655_SNP [dm6]	C	T	3.239e^-4	0.836	INTRON GluRIA
2R	7883553	2R_7883553_SNP [dm3] 2R_11996048_SNP [dm6]	G	A	3.241e^-4	0.836	EXON CR45319 & 1 other
3L	3178837	3L_3178837_SNP [dm3] 3L_3178837_SNP [dm6]	C	T	3.262e^-4	0.838	UPSTREAM Girdin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	7110282	2R_7110282_SNP [dm3] 2R_11222777_SNP [dm6]	C	A	3.264e^-4	0.838	UPSTREAM CG7737 DOWNSTREAM Syx6 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10136199	X_10136199_SNP [dm3] X_10242166_SNP [dm6]	T	C	3.264e^-4	0.838	INTRON Hk
3L	12198303	3L_12198303_SNP [dm3] 3L_12205203_SNP [dm6]	A	G	3.283e^-4	0.838	SYNONYMOUS_CODING CG5626
3L	17805750	3L_17805750_SNP [dm3] 3L_17812650_SNP [dm6]	T	C	3.285e^-4	0.838	INTRON cln3
3R	25366007	3R_25366007_SNP [dm3] 3R_29540285_SNP [dm6]	A	T	3.287e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6618376	3L_6618376_SNP [dm3] 3L_6625276_SNP [dm6]	T	G	3.292e^-4	0.838	INTRON GluRIA
3L	3421063	3L_3421063_SNP [dm3] 3L_3421063_SNP [dm6]	A	C	3.293e^-4	0.838	INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3421068	3L_3421068_SNP [dm3] 3L_3421068_SNP [dm6]	A	T	3.293e^-4	0.838	INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	13804125	3R_13804125_SNP [dm3] 3R_17978403_SNP [dm6]	A	C	3.295e^-4	0.838	INTRON cpo
3L	3420983	3L_3420983_SNP [dm3] 3L_3420983_SNP [dm6]	A	T	3.303e^-4	0.838	INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	12036195	3L_12036195_SNP [dm3] 3L_12043095_SNP [dm6]	G	A	3.311e^-4	0.838	INTRON rols & 1 other	TF binding site mE1_TFBS_chinmo
3R	25249421	3R_25249421_SNP [dm3] 3R_29423699_SNP [dm6]	G	C	3.311e^-4	0.838	INTRON Ptp99A
3L	2797435	3L_2797435_SNP [dm3] 3L_2797435_SNP [dm6]	G	A	3.336e^-4	0.838	INTRON CG43444
2L	17444262	2L_17444262_SNP [dm3] 2L_17444262_SNP [dm6]	T	C	3.336e^-4	0.838	INTRON dl
2R	5579666	2R_5579666_SNP [dm3] 2R_9692161_SNP [dm6]	T	A	3.339e^-4	0.838	INTRON Uba1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	8169897	2R_8169897_SNP [dm3] 2R_12282392_SNP [dm6]	C	T	3.344e^-4	0.838	INTRON CG42700
2L	9114284	2L_9114284_SNP [dm3] 2L_9114284_SNP [dm6]	G	A	3.344e^-4	0.838	DOWNSTREAM Or30a INTERGENIC
2R	10910528	2R_10910528_SNP [dm3] 2R_15023023_SNP [dm6]	C	T	3.357e^-4	0.838	INTRON hbs
2R	7474638	2R_7474638_SNP [dm3] 2R_11587133_SNP [dm6]	T	A	3.360e^-4	0.838	SYNONYMOUS_CODING tou
3R	26647635	3R_26647635_SNP [dm3] 3R_30821913_SNP [dm6]	T	A	3.360e^-4	0.838	UPSTREAM cindr INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12748721	3R_12748721_SNP [dm3] 3R_16922999_SNP [dm6]	G	C	3.365e^-4	0.838	EXON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5490058	3R_5490058_SNP [dm3] 3R_9664336_SNP [dm6]	C	T	3.369e^-4	0.838	INTRON CG9492
X	2881392	X_2881392_SNP [dm3] X_2987359_SNP [dm6]	A	C	3.372e^-4	0.838	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3R	10996235	3R_10996235_SNP [dm3] 3R_15170513_SNP [dm6]	C	G	3.374e^-4	0.838	DOWNSTREAM Mf INTRON Gyc88E
3R	6087038	3R_6087038_SNP [dm3] 3R_10261316_SNP [dm6]	T	C	3.376e^-4	0.838	NON_SYNONYMOUS_CODING Sirt6 UPSTREAM pont	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14927593	X_14927593_SNP [dm3] X_15033560_SNP [dm6]	T	C	3.378e^-4	0.838	INTRON hiw & 1 other
2L	18794817	2L_18794817_SNP [dm3] 2L_18794817_SNP [dm6]	C	T	3.384e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	19411338	2L_19411338_SNP [dm3] 2L_19411338_SNP [dm6]	C	A	3.393e^-4	0.838	UPSTREAM Pax INTRON Pax	insulator Insulator_Class_I.mE01
2L	2016143	2L_2016143_SNP [dm3] 2L_2016143_SNP [dm6]	A	G	3.394e^-4	0.838	INTRON CG4238
2L	1846011	2L_1846011_SNP [dm3] 2L_1846011_SNP [dm6]	G	C	3.395e^-4	0.838	INTRON wry
3L	7297069	3L_7297069_SNP [dm3] 3L_7303969_SNP [dm6]	G	A	3.400e^-4	0.838	INTRON unc-13-4A	TF binding site mE1_TFBS_inv
2R	8175891	2R_8175891_SNP [dm3] 2R_12288386_SNP [dm6]	A	G	3.408e^-4	0.838	INTRON CG42700
2L	14402210	2L_14402210_SNP [dm3] 2L_14402210_SNP [dm6]	G	A	3.409e^-4	0.838	INTRON elB
3L	8869598	3L_8869598_SNP [dm3] 3L_8876498_SNP [dm6]	A	G	3.421e^-4	0.838	INTRON dally
2L	18202871	2L_18202871_SNP [dm3] 2L_18202871_SNP [dm6]	C	G	3.422e^-4	0.838	INTRON CG42750	TF binding site mE1_TFBS_cad
2L	11442495	2L_11442495_SNP [dm3] 2L_11442495_SNP [dm6]	T	C	3.422e^-4	0.838	INTRON salm
3L	10738928	3L_10738928_DEL [dm3] 3L_10745828_DEL [dm6]	TTATCCA	T	3.427e^-4	0.838	INTERGENIC
3R	17028466	3R_17028466_INS [dm3] 3R_21202744_INS [dm6]	A	AA	3.437e^-4	0.838	INTRON SNF4Agamma
3R	18982358	3R_18982358_SNP [dm3] 3R_23156636_SNP [dm6]	T	A	3.442e^-4	0.838	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4916717	3L_4916717_SNP [dm3] 3L_4916717_SNP [dm6]	C	G	3.446e^-4	0.838	INTRON Rh50
2L	18251432	2L_18251432_SNP [dm3] 2L_18251432_SNP [dm6]	G	A	3.453e^-4	0.838	NON_SYNONYMOUS_CODING CG43406 INTRON CG42750
2R	8165759	2R_8165759_SNP [dm3] 2R_12278254_SNP [dm6]	A	C	3.454e^-4	0.838	UTR_3_PRIME Cam
3L	9013818	3L_9013818_SNP [dm3] 3L_9020718_SNP [dm6]	C	T	3.456e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1111874	2L_1111874_SNP [dm3] 2L_1111874_SNP [dm6]	C	T	3.462e^-4	0.838	SYNONYMOUS_CODING CG14339	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15847459	2L_15847459_SNP [dm3] 2L_15847459_SNP [dm6]	A	G	3.464e^-4	0.838	DOWNSTREAM CR43763 INTERGENIC
3L	7356071	3L_7356071_SNP [dm3] 3L_7362971_SNP [dm6]	C	T	3.476e^-4	0.838	SYNONYMOUS_CODING Sec63	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18765220	2L_18765220_SNP [dm3] 2L_18765220_SNP [dm6]	A	G	3.476e^-4	0.838	SYNONYMOUS_CODING ham	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	14396102	2L_14396102_SNP [dm3] 2L_14396102_SNP [dm6]	C	T	3.477e^-4	0.838	INTRON elB
3R	13445318	3R_13445318_SNP [dm3] 3R_17619596_SNP [dm6]	T	C	3.477e^-4	0.838	SYNONYMOUS_CODING CG14326 UPSTREAM tRNA:CR31570 & 2 others DOWNSTREAM tRNA:A:90C
3L	3599898	3L_3599898_SNP [dm3] 3L_3599898_SNP [dm6]	C	T	3.479e^-4	0.838	INTRON Eip63E
3L	4079037	3L_4079037_SNP [dm3] 3L_4079037_SNP [dm6]	G	A	3.480e^-4	0.838	SYNONYMOUS_CODING Gad1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7705417	3L_7705417_SNP [dm3] 3L_7712317_SNP [dm6]	C	A	3.498e^-4	0.841	INTRON CG32373 & 1 other
X	9180000	X_9180000_SNP [dm3] X_9285967_SNP [dm6]	C	T	3.504e^-4	0.841	NON_SYNONYMOUS_CODING lz
3R	14203742	3R_14203742_SNP [dm3] 3R_18378020_SNP [dm6]	C	G	3.506e^-4	0.841	DOWNSTREAM CG7675 INTERGENIC
3L	649315	3L_649315_SNP [dm3] 3L_649315_SNP [dm6]	C	T	3.512e^-4	0.841	SYNONYMOUS_CODING Gale	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8158024	2R_8158024_SNP [dm3] 2R_12270519_SNP [dm6]	C	G	3.517e^-4	0.841	INTRON Cam	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9869398	3L_9869398_INS [dm3] 3L_9876298_INS [dm6]	G	GAAC	3.518e^-4	0.841	EXON CR45406
2R	9263155	2R_9263155_SNP [dm3] 2R_13375650_SNP [dm6]	T	A	3.522e^-4	0.841	DOWNSTREAM CG10814 INTERGENIC
2L	16614838	2L_16614838_SNP [dm3] 2L_16614838_SNP [dm6]	G	T	3.538e^-4	0.841	INTRON CG42389
3L	5707278	3L_5707278_SNP [dm3] 3L_5714178_SNP [dm6]	C	G	3.547e^-4	0.841	DOWNSTREAM CG44521 INTRON sif
3L	22351195	3L_22351195_DEL [dm3] 3L_22358095_DEL [dm6]	CAATCCTC	A	3.559e^-4	0.841	INTRON Ten-m	TF binding site mE1_TFBS_sens
X	10594107	X_10594107_INS [dm3] X_10700074_INS [dm6]	C	CAGC	3.562e^-4	0.841		TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5757713	3L_5757713_SNP [dm3] 3L_5764613_SNP [dm6]	T	C	3.580e^-4	0.841	UPSTREAM snoRNA:Psi28S-1837c & 2 others DOWNSTREAM unsRNA:CG10576-a INTRON CG10576	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8176776	2R_8176776_SNP [dm3] 2R_12289271_SNP [dm6]	T	C	3.582e^-4	0.841	INTRON CG42700
3L	1380375	3L_1380375_SNP [dm3] 3L_1380375_SNP [dm6]	T	C	3.597e^-4	0.841	UPSTREAM tRNA:CR32329 DOWNSTREAM tRNA:CR32330 & 1 other INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7317845	X_7317845_SNP [dm3] X_7423812_SNP [dm6]	T	A	3.600e^-4	0.841	DOWNSTREAM CG15036 INTERGENIC
2L	9872085	2L_9872085_SNP [dm3] 2L_9872085_SNP [dm6]	T	A	3.605e^-4	0.841	INTRON nAChRalpha6
3R	19524447	3R_19524447_SNP [dm3] 3R_23698725_SNP [dm6]	A	C	3.607e^-4	0.841	SYNONYMOUS_CODING prt DOWNSTREAM CG31468	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	4722389	2L_4722389_INS [dm3] 2L_4722389_INS [dm6]	A	ATACT	3.608e^-4	0.841	UTR_3_PRIME CG34351
2R	8095372	2R_8095372_INS [dm3] 2R_12207867_INS [dm6]	T	TT	3.614e^-4	0.841	DOWNSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	19778411	3R_19778411_SNP [dm3] 3R_23952689_SNP [dm6]	C	T	3.619e^-4	0.841	SYNONYMOUS_CODING Aats-glupro	TF binding site mE1_TFBS_cad
2R	11217566	2R_11217566_SNP [dm3] 2R_15330061_SNP [dm6]	T	C	3.621e^-4	0.841	DOWNSTREAM CR44371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11824006	3R_11824006_SNP [dm3] 3R_15998284_SNP [dm6]	A	G	3.622e^-4	0.841	INTRON srp
3L	233626	3L_233626_SNP [dm3] 3L_233626_SNP [dm6]	T	C	3.640e^-4	0.841	UPSTREAM CG34453 DOWNSTREAM E_bx_ INTERGENIC
3L	233632	3L_233632_SNP [dm3] 3L_233632_SNP [dm6]	A	G	3.640e^-4	0.841	UPSTREAM CG34453 DOWNSTREAM E_bx_ INTERGENIC
3R	4959307	3R_4959307_SNP [dm3] 3R_9133585_SNP [dm6]	G	A	3.640e^-4	0.841	INTRON pum
2R	8931216	2R_8931216_SNP [dm3] 2R_13043711_SNP [dm6]	A	C	3.641e^-4	0.841	DOWNSTREAM CG13323 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	12033450	2R_12033450_SNP [dm3] 2R_16145945_SNP [dm6]	G	C	3.645e^-4	0.841	UTR_3_PRIME Ext2 DOWNSTREAM Aats-cys
2L	4336266	2L_4336266_SNP [dm3] 2L_4336266_SNP [dm6]	G	A	3.651e^-4	0.841	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7633270	3R_7633270_SNP [dm3] 3R_11807548_SNP [dm6]	A	G	3.651e^-4	0.841	UPSTREAM ClC-a INTRON ClC-a
3R	13065682	3R_13065682_SNP [dm3] 3R_17239960_SNP [dm6]	G	T	3.653e^-4	0.841	INTRON beat-IIb
3R	18718296	3R_18718296_INS [dm3] 3R_22892574_INS [dm6]	G	GAG	3.653e^-4	0.841	INTERGENIC
2L	15651017	2L_15651017_SNP [dm3] 2L_15651017_SNP [dm6]	G	C	3.655e^-4	0.841	INTRON CG4587
3R	14035714	3R_14035714_SNP [dm3] 3R_18209992_SNP [dm6]	G	C	3.656e^-4	0.841	DOWNSTREAM CG44158 INTRON CG7985
3R	14203738	3R_14203738_SNP [dm3] 3R_18378016_SNP [dm6]	C	T	3.663e^-4	0.841	DOWNSTREAM CG7675 INTERGENIC
3R	13856909	3R_13856909_SNP [dm3] 3R_18031187_SNP [dm6]	G	A	3.671e^-4	0.841	INTERGENIC
3R	14298861	3R_14298861_SNP [dm3] 3R_18473139_SNP [dm6]	A	C	3.676e^-4	0.841	INTRON fru
3R	14938112	3R_14938112_SNP [dm3] 3R_19112390_SNP [dm6]	A	G	3.677e^-4	0.841	INTRON CG6040
2L	13842794	2L_13842794_SNP [dm3] 2L_13842794_SNP [dm6]	C	T	3.679e^-4	0.841	DOWNSTREAM CG33306 INTRON CenG1A
3R	27138251	3R_27138251_SNP [dm3] 3R_31312529_SNP [dm6]	G	C	3.681e^-4	0.841	INTRON CG34347
X	6169943	X_6169943_DEL [dm3] X_6275910_DEL [dm6]	TGAAACTTT	G	3.681e^-4	0.841	UTR_3_PRIME CG3566 DOWNSTREAM Spt6 & 1 other INTRON CG3566	TF binding site mE1_TFBS_HSA
2R	8130473	2R_8130473_SNP [dm3] 2R_12242968_SNP [dm6]	A	T	3.682e^-4	0.841	INTRON CG43316
2L	7131135	2L_7131135_SNP [dm3] 2L_7131135_SNP [dm6]	A	T	3.683e^-4	0.841	INTRON Pvf3
2L	4861610	2L_4861610_SNP [dm3] 2L_4861610_SNP [dm6]	C	T	3.690e^-4	0.841	INTRON pog
3R	17633623	3R_17633623_SNP [dm3] 3R_21807901_SNP [dm6]	A	G	3.693e^-4	0.841	UTR_5_PRIME CASK INTRON CASK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	8644523	3L_8644523_SNP [dm3] 3L_8651423_SNP [dm6]	C	G	3.693e^-4	0.841	DOWNSTREAM Pex7 INTERGENIC	TF binding site mE1_TFBS_cad
2R	8306386	2R_8306386_SNP [dm3] 2R_12418881_SNP [dm6]	G	T	3.697e^-4	0.841	DOWNSTREAM CG42782 & 2 others INTERGENIC
2R	8174296	2R_8174296_SNP [dm3] 2R_12286791_SNP [dm6]	C	G	3.703e^-4	0.841	INTRON CG42700
2R	8130269	2R_8130269_SNP [dm3] 2R_12242764_SNP [dm6]	A	C	3.708e^-4	0.841	SYNONYMOUS_CODING CG43316 DOWNSTREAM CG43315
2R	9413820	2R_9413820_SNP [dm3] 2R_13526315_SNP [dm6]	T	C	3.711e^-4	0.841	UTR_3_PRIME CG13332 INTRON Vmat
3L	11386775	3L_11386775_DEL [dm3] 3L_11393675_DEL [dm6]	CGTGTGG	C	3.718e^-4	0.841	INTERGENIC
3R	22798132	3R_22798132_SNP [dm3] 3R_26972410_SNP [dm6]	T	C	3.721e^-4	0.841	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_cad
2R	12547877	2R_12547877_SNP [dm3] 2R_16660372_SNP [dm6]	A	C	3.724e^-4	0.841	INTRON Picot
3R	7872075	3R_7872075_SNP [dm3] 3R_12046353_SNP [dm6]	T	C	3.739e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19317605	3R_19317605_SNP [dm3] 3R_23491883_SNP [dm6]	C	T	3.750e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	6889396	3R_6889396_SNP [dm3] 3R_11063674_SNP [dm6]	A	T	3.754e^-4	0.844	INTERGENIC
3R	16369807	3R_16369807_SNP [dm3] 3R_20544085_SNP [dm6]	T	A	3.756e^-4	0.844	INTRON Stat92E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8728635	2R_8728635_SNP [dm3] 2R_12841130_SNP [dm6]	G	A	3.778e^-4	0.845	SYNONYMOUS_CODING Cyp9h1
2R	17079923	2R_17079923_SNP [dm3] 2R_21192418_SNP [dm6]	C	G	3.792e^-4	0.845	UTR_3_PRIME tud	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11442585	2L_11442585_SNP [dm3] 2L_11442585_SNP [dm6]	A	G	3.795e^-4	0.845	INTRON salm
2R	15692831	2R_15692831_INS [dm3] 2R_19805326_INS [dm6]	A	AA	3.798e^-4	0.845	INTERGENIC
2R	8188143	2R_8188143_SNP [dm3] 2R_12300638_SNP [dm6]	C	T	3.800e^-4	0.845	UTR_3_PRIME CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13081408	3R_13081408_SNP [dm3] 3R_17255686_SNP [dm6]	C	G	3.803e^-4	0.845	INTRON beat-IIb
3L	19931810	3L_19931810_SNP [dm3] 3L_19938710_SNP [dm6]	G	A	3.804e^-4	0.845	UPSTREAM Ac76E INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1354828	3L_1354828_SNP [dm3] 3L_1354828_SNP [dm6]	A	G	3.806e^-4	0.845	INTRON Ptp61F
3L	2796874	3L_2796874_SNP [dm3] 3L_2796874_SNP [dm6]	G	C	3.813e^-4	0.845	INTRON CG43444	TF binding site mE1_TFBS_inv
2R	10924451	2R_10924451_SNP [dm3] 2R_15036946_SNP [dm6]	A	T	3.814e^-4	0.845	SYNONYMOUS_CODING hbs	TF binding site mE1_TFBS_chinmo
3R	23224272	3R_23224272_SNP [dm3] 3R_27398550_SNP [dm6]	G	C	3.815e^-4	0.845	INTRON side
3L	16043381	3L_16043381_SNP [dm3] 3L_16050281_SNP [dm6]	C	G	3.823e^-4	0.845	INTRON th EXON CR43951	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	14915287	2L_14915287_SNP [dm3] 2L_14915287_SNP [dm6]	G	T	3.824e^-4	0.845	INTRON CG42313
3R	9942991	3R_9942991_SNP [dm3] 3R_14117269_SNP [dm6]	T	G	3.826e^-4	0.845	INTRON Kif19A
3L	1380610	3L_1380610_SNP [dm3] 3L_1380610_SNP [dm6]	C	A	3.829e^-4	0.845	DOWNSTREAM tRNA:CR32330 & 2 others INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4560757	3L_4560757_SNP [dm3] 3L_4560757_SNP [dm6]	G	T	3.841e^-4	0.847	INTRON CG42540
2R	8162788	2R_8162788_DEL [dm3] 2R_12275283_DEL [dm6]	ATTA	A	3.865e^-4	0.851	UTR_3_PRIME Cam DOWNSTREAM Cam
3R	13075680	3R_13075680_SNP [dm3] 3R_17249958_SNP [dm6]	G	C	3.868e^-4	0.851	INTRON beat-IIb
2R	8120587	2R_8120587_SNP [dm3] 2R_12233082_SNP [dm6]	T	A	3.873e^-4	0.851	DOWNSTREAM CR44313 INTERGENIC
2L	7402952	2L_7402952_SNP [dm3] 2L_7402952_SNP [dm6]	G	A	3.882e^-4	0.851	UTR_5_PRIME CG5171 UPSTREAM CG5171 INTRON CG5171
2R	19705126	2R_19705126_SNP [dm3] 2R_23817603_SNP [dm6]	T	G	3.884e^-4	0.851	INTRON CG4797
2L	19382044	2L_19382044_SNP [dm3] 2L_19382044_SNP [dm6]	A	G	3.893e^-4	0.851	NON_SYNONYMOUS_CODING CG17350	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7356107	3L_7356107_SNP [dm3] 3L_7363007_SNP [dm6]	G	A	3.897e^-4	0.851	SYNONYMOUS_CODING Sec63	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8534526	2R_8534526_SNP [dm3] 2R_12647021_SNP [dm6]	G	T	3.901e^-4	0.851	INTRON CG8785
2L	12371813	2L_12371813_SNP [dm3] 2L_12371813_SNP [dm6]	A	G	3.903e^-4	0.851	INTRON bru-2
2R	12532668	2R_12532668_SNP [dm3] 2R_16645163_SNP [dm6]	G	T	3.907e^-4	0.851	SYNONYMOUS_CODING gprs	TF binding site mE1_TFBS_cad
2R	8092527	2R_8092527_SNP [dm3] 2R_12205022_SNP [dm6]	C	T	3.923e^-4	0.853	INTERGENIC
2R	8158259	2R_8158259_SNP [dm3] 2R_12270754_SNP [dm6]	G	A	3.926e^-4	0.853	INTRON Cam	TF binding site mE1_TFBS_zfh1
2R	8072295	2R_8072295_SNP [dm3] 2R_12184790_SNP [dm6]	A	G	3.940e^-4	0.855	NON_SYNONYMOUS_CODING CG33964 UTR_3_PRIME CG13175 UPSTREAM SmF & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2617922	X_2617922_SNP [dm3] X_2723889_SNP [dm6]	C	T	3.946e^-4	0.856	UTR_3_PRIME fs_1_Yb UPSTREAM fs_1_Ya	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8181352	2R_8181352_DEL [dm3] 2R_12293847_DEL [dm6]	AC	A	3.951e^-4	0.856	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21675748	3R_21675748_SNP [dm3] 3R_25850026_SNP [dm6]	A	C	3.958e^-4	0.856	DOWNSTREAM CG14545 INTERGENIC
2R	8084501	2R_8084501_SNP [dm3] 2R_12196996_SNP [dm6]	T	C	3.970e^-4	0.858	INTRON CG8858	TF binding site mE1_TFBS_cad
2L	15475131	2L_15475131_SNP [dm3] 2L_15475131_SNP [dm6]	C	A	3.976e^-4	0.858	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	19157074	3L_19157074_SNP [dm3] 3L_19163974_SNP [dm6]	C	T	3.977e^-4	0.858	INTRON fz2	TF binding site mE1_TFBS_cad
3L	2797427	3L_2797427_SNP [dm3] 3L_2797427_SNP [dm6]	A	T	3.993e^-4	0.858	INTRON CG43444
3L	6614933	3L_6614933_SNP [dm3] 3L_6621833_SNP [dm6]	A	G	3.994e^-4	0.858	INTERGENIC
2L	22003762	2L_22003762_SNP [dm3] 2L_22003762_SNP [dm6]	A	C	3.997e^-4	0.858	INTERGENIC
3R	19609902	3R_19609902_SNP [dm3] 3R_23784180_SNP [dm6]	C	G	4.000e^-4	0.858	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5717510	2L_5717510_SNP [dm3] 2L_5717510_SNP [dm6]	G	A	4.011e^-4	0.86	NON_SYNONYMOUS_CODING CG34011 UPSTREAM CG14007 DOWNSTREAM CG11149
2R	8618978	2R_8618978_SNP [dm3] 2R_12731473_SNP [dm6]	C	A	4.020e^-4	0.86	INTRON CG42663	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	15324032	2R_15324032_SNP [dm3] 2R_19436527_SNP [dm6]	G	T	4.032e^-4	0.86	UPSTREAM Spt5 INTRON Fak	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12547841	2R_12547841_SNP [dm3] 2R_16660336_SNP [dm6]	C	A	4.034e^-4	0.86	INTRON Picot
X	9181939	X_9181939_SNP [dm3] X_9287906_SNP [dm6]	G	T	4.037e^-4	0.86	INTRON lz
3L	8595397	3L_8595397_SNP [dm3] 3L_8602297_SNP [dm6]	G	A	4.045e^-4	0.86	SYNONYMOUS_CODING RpL14 DOWNSTREAM CG5989 & 2 others	TF binding site mE1_TFBS_sens
2R	8176570	2R_8176570_SNP [dm3] 2R_12289065_SNP [dm6]	A	C	4.048e^-4	0.86	INTRON CG42700
2R	8167127	2R_8167127_SNP [dm3] 2R_12279622_SNP [dm6]	C	A	4.051e^-4	0.86	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	8179010	2R_8179010_SNP [dm3] 2R_12291505_SNP [dm6]	C	A	4.055e^-4	0.86	INTRON CG42700
2R	8172994	2R_8172994_DEL [dm3] 2R_12285489_DEL [dm6]	AG	A	4.059e^-4	0.86	UPSTREAM CG42700 INTRON CG42700
3R	16899208	3R_16899208_SNP [dm3] 3R_21073486_SNP [dm6]	A	T	4.065e^-4	0.86	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	8163711	2R_8163711_INS [dm3] 2R_12276206_INS [dm6]	C	CC	4.077e^-4	0.86	UTR_3_PRIME Cam
2R	12034455	2R_12034455_SNP [dm3] 2R_16146950_SNP [dm6]	C	T	4.077e^-4	0.86	SYNONYMOUS_CODING Ext2
2R	8127103	2R_8127103_SNP [dm3] 2R_12239598_SNP [dm6]	T	G	4.083e^-4	0.86	UPSTREAM CG13170 INTERGENIC
2R	8096239	2R_8096239_SNP [dm3] 2R_12208734_SNP [dm6]	T	C	4.083e^-4	0.86	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14814123	3L_14814123_SNP [dm3] 3L_14821023_SNP [dm6]	G	T	4.084e^-4	0.86	INTRON CG17839
2R	8154457	2R_8154457_SNP [dm3] 2R_12266952_SNP [dm6]	T	A	4.099e^-4	0.86	INTRON Cam
3R	13418418	3R_13418418_SNP [dm3] 3R_17592696_SNP [dm6]	G	A	4.100e^-4	0.86	INTERGENIC
2L	7114851	2L_7114851_SNP [dm3] 2L_7114851_SNP [dm6]	T	C	4.108e^-4	0.86	INTRON Pvf3
2R	8122437	2R_8122437_SNP [dm3] 2R_12234932_SNP [dm6]	A	T	4.119e^-4	0.86	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	14395986	2L_14395986_SNP [dm3] 2L_14395986_SNP [dm6]	C	G	4.149e^-4	0.86	INTRON elB
3L	19217897	3L_19217897_SNP [dm3] 3L_19224797_SNP [dm6]	G	A	4.149e^-4	0.86	INTRON fz2
3R	19506298	3R_19506298_SNP [dm3] 3R_23680576_SNP [dm6]	A	G	4.156e^-4	0.86	SYNONYMOUS_CODING eIF-3p66 DOWNSTREAM CG10157	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2541580	3L_2541580_DEL [dm3] 3L_2541580_DEL [dm6]	TTTGATTA	G	4.160e^-4	0.86	INTRON Spn
2R	8174455	2R_8174455_SNP [dm3] 2R_12286950_SNP [dm6]	T	C	4.175e^-4	0.86	INTRON CG42700
3R	18718311	3R_18718311_SNP [dm3] 3R_22892589_SNP [dm6]	A	C	4.182e^-4	0.86	INTERGENIC
2R	8088154	2R_8088154_SNP [dm3] 2R_12200649_SNP [dm6]	T	C	4.184e^-4	0.86	UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	18229038	3L_18229038_SNP [dm3] 3L_18235938_SNP [dm6]	C	A	4.185e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1528313	2L_1528313_SNP [dm3] 2L_1528313_SNP [dm6]	G	T	4.200e^-4	0.86	INTERGENIC
3L	1457496	3L_1457496_SNP [dm3] 3L_1457496_SNP [dm6]	G	C	4.216e^-4	0.86	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	8123867	2R_8123867_SNP [dm3] 2R_12236362_SNP [dm6]	G	A	4.235e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8166383	2R_8166383_SNP [dm3] 2R_12278878_SNP [dm6]	T	A	4.236e^-4	0.86	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	8093965	2R_8093965_SNP [dm3] 2R_12206460_SNP [dm6]	G	C	4.240e^-4	0.86	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10898651	2R_10898651_SNP [dm3] 2R_15011146_SNP [dm6]	A	G	4.243e^-4	0.86	UPSTREAM hbs INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3L	18234186	3L_18234186_SNP [dm3] 3L_18241086_SNP [dm6]	C	A	4.244e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	8127251	2R_8127251_SNP [dm3] 2R_12239746_SNP [dm6]	A	C	4.244e^-4	0.86	UPSTREAM CG13170 INTERGENIC
3R	14501610	3R_14501610_SNP [dm3] 3R_18675888_SNP [dm6]	G	A	4.248e^-4	0.86	SYNONYMOUS_CODING CG7705 UTR_3_PRIME CG7705	TF binding site mE1_TFBS_cad
2L	19411331	2L_19411331_INS [dm3] 2L_19411331_INS [dm6]	G	GCTAT	4.250e^-4	0.86	UPSTREAM Pax INTRON Pax
2L	19411336	2L_19411336_INS [dm3] 2L_19411336_INS [dm6]	G	GGTA	4.250e^-4	0.86	UPSTREAM Pax INTRON Pax
3R	9791066	3R_9791066_SNP [dm3] 3R_13965344_SNP [dm6]	G	A	4.251e^-4	0.86	NON_SYNONYMOUS_CODING Orc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	18434597	X_18434597_DEL [dm3] X_18540564_DEL [dm6]	TT	T	4.256e^-4	0.86	INTRON Bx
2L	15914249	2L_15914249_SNP [dm3] 2L_15914249_SNP [dm6]	T	C	4.258e^-4	0.86	INTRON beat-Ib
3R	13886983	3R_13886983_SNP [dm3] 3R_18061261_SNP [dm6]	T	A	4.258e^-4	0.86	INTERGENIC
X	16775603	X_16775603_SNP [dm3] X_16881570_SNP [dm6]	C	G	4.262e^-4	0.86	NON_SYNONYMOUS_CODING CG4872 DOWNSTREAM CG9104	TF binding site mE1_TFBS_chinmo
2L	6322688	2L_6322688_SNP [dm3] 2L_6322688_SNP [dm6]	C	T	4.267e^-4	0.86	UTR_3_PRIME Ddr
3L	8089588	3L_8089588_INS [dm3] 3L_8096488_INS [dm6]	T	TT	4.271e^-4	0.86	UPSTREAM Ect4 INTRON Ect4
3R	14704153	3R_14704153_DEL [dm3] 3R_18878431_DEL [dm6]	AA	A	4.279e^-4	0.86	INTERGENIC
3R	15248748	3R_15248748_SNP [dm3] 3R_19423026_SNP [dm6]	A	G	4.284e^-4	0.86	DOWNSTREAM CG3517 INTRON CG31221
2L	11053098	2L_11053098_SNP [dm3] 2L_11053098_SNP [dm6]	A	T	4.286e^-4	0.86	INTRON Samuel
2R	19016870	2R_19016870_SNP [dm3] 2R_23129347_SNP [dm6]	C	T	4.291e^-4	0.86	DOWNSTREAM CR44456 INTRON CG3215
3R	7872084	3R_7872084_SNP [dm3] 3R_12046362_SNP [dm6]	G	A	4.291e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6013186	X_6013186_SNP [dm3] X_6119153_SNP [dm6]	A	T	4.295e^-4	0.86	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16427855	2L_16427855_SNP [dm3] 2L_16427855_SNP [dm6]	C	A	4.308e^-4	0.86	INTRON CG5888	TF binding site mE1_TFBS_Kr
2R	8108827	2R_8108827_SNP [dm3] 2R_12221322_SNP [dm6]	A	T	4.314e^-4	0.86	INTERGENIC
3L	15117306	3L_15117306_SNP [dm3] 3L_15124206_SNP [dm6]	G	A	4.318e^-4	0.86	UTR_5_PRIME CG16959 INTRON Cep135 & 1 other
3L	9956397	3L_9956397_SNP [dm3] 3L_9963297_SNP [dm6]	T	A	4.321e^-4	0.86	INTRON CG34356
2L	19411325	2L_19411325_SNP [dm3] 2L_19411325_SNP [dm6]	C	T	4.322e^-4	0.86	UPSTREAM Pax INTRON Pax
3L	7226500	3L_7226500_DEL [dm3] 3L_7233400_DEL [dm6]	AAATAGAAATCATTCAAATA...	A	4.323e^-4	0.86	INTERGENIC
2L	11463278	2L_11463278_SNP [dm3] 2L_11463278_SNP [dm6]	A	C	4.324e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_cad
3R	13445300	3R_13445300_SNP [dm3] 3R_17619578_SNP [dm6]	A	G	4.325e^-4	0.86	SYNONYMOUS_CODING CG14326 UPSTREAM tRNA:CR31570 & 2 others DOWNSTREAM tRNA:A:90C	TF binding site mE1_TFBS_inv
2R	8078006	2R_8078006_INS [dm3] 2R_12190501_INS [dm6]	G	GG	4.343e^-4	0.86	UPSTREAM Cyp6t3 & 1 other INTERGENIC
3R	5637646	3R_5637646_SNP [dm3] 3R_9811924_SNP [dm6]	G	A	4.347e^-4	0.86	UPSTREAM CG8534 INTRON CR44035	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	14536340	X_14536340_SNP [dm3] X_14642307_SNP [dm6]	A	T	4.356e^-4	0.86	INTRON NetA
2R	1417974	2R_1417974_SNP [dm3] 2R_5530469_SNP [dm6]	A	G	4.366e^-4	0.86	INTRON CG30438	transposable element FlyBase
3R	13802193	3R_13802193_SNP [dm3] 3R_17976471_SNP [dm6]	G	A	4.366e^-4	0.86	INTRON cpo
2R	8128249	2R_8128249_SNP [dm3] 2R_12240744_SNP [dm6]	A	T	4.374e^-4	0.86	SYNONYMOUS_CODING CG13170 UPSTREAM CG43315
2L	10011021	2L_10011021_SNP [dm3] 2L_10011021_SNP [dm6]	G	A	4.379e^-4	0.86	SYNONYMOUS_CODING Trp1
2L	6174242	2L_6174242_SNP [dm3] 2L_6174242_SNP [dm6]	T	C	4.393e^-4	0.86	INTERGENIC
2R	8164489	2R_8164489_SNP [dm3] 2R_12276984_SNP [dm6]	C	T	4.394e^-4	0.86	UTR_3_PRIME Cam DOWNSTREAM Cam
3L	801240	3L_801240_SNP [dm3] 3L_801240_SNP [dm6]	G	C	4.396e^-4	0.86	INTERGENIC
2L	15914497	2L_15914497_SNP [dm3] 2L_15914497_SNP [dm6]	A	C	4.396e^-4	0.86	INTRON beat-Ib
3R	8134416	3R_8134416_SNP [dm3] 3R_12308694_SNP [dm6]	C	G	4.398e^-4	0.86	INTERGENIC
3R	17313695	3R_17313695_SNP [dm3] 3R_21487973_SNP [dm6]	A	G	4.399e^-4	0.86	DOWNSTREAM CG7922 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19006991	2R_19006991_DEL [dm3] 2R_23119468_DEL [dm6]	GTAA	TG	4.400e^-4	0.86	INTERGENIC
2L	14722447	2L_14722447_INS [dm3] 2L_14722447_INS [dm6]	T	TT	4.401e^-4	0.86	INTERGENIC
2L	15888186	2L_15888186_SNP [dm3] 2L_15888186_SNP [dm6]	C	T	4.407e^-4	0.86	DOWNSTREAM Tep1 EXON CR31824
3L	8595364	3L_8595364_SNP [dm3] 3L_8602264_SNP [dm6]	G	A	4.411e^-4	0.86	SYNONYMOUS_CODING RpL14 DOWNSTREAM CG5989 & 2 others	TF binding site mE1_TFBS_sens
2R	8117934	2R_8117934_DEL [dm3] 2R_12230429_DEL [dm6]	TTA	T	4.416e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	9760063	X_9760063_SNP [dm3] X_9866030_SNP [dm6]	G	A	4.416e^-4	0.86	NON_SYNONYMOUS_CODING Ser7	TF binding site mE1_TFBS_chinmo
3L	15293228	3L_15293228_SNP [dm3] 3L_15300128_SNP [dm6]	C	T	4.423e^-4	0.86	SPLICE_SITE_REGION Best4 SYNONYMOUS_CODING Best4 DOWNSTREAM Best3
3R	27138156	3R_27138156_SNP [dm3] 3R_31312434_SNP [dm6]	C	G	4.425e^-4	0.86	INTRON CG34347
3R	25162333	3R_25162333_SNP [dm3] 3R_29336611_SNP [dm6]	T	C	4.427e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19920373	3L_19920373_SNP [dm3] 3L_19927273_SNP [dm6]	C	A	4.427e^-4	0.86	UTR_3_PRIME CG8004 DOWNSTREAM Grasp65
3L	6764146	3L_6764146_SNP [dm3] 3L_6771046_SNP [dm6]	G	A	4.434e^-4	0.86	INTERGENIC
3L	79747	3L_79747_SNP [dm3] 3L_79747_SNP [dm6]	T	A	4.435e^-4	0.86	INTERGENIC
2R	12163329	2R_12163329_SNP [dm3] 2R_16275824_SNP [dm6]	C	A	4.437e^-4	0.86	SYNONYMOUS_CODING CG33017
2R	16476471	2R_16476471_SNP [dm3] 2R_20588966_SNP [dm6]	T	A	4.443e^-4	0.86	INTRON bl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	12515452	2L_12515452_SNP [dm3] 2L_12515452_SNP [dm6]	A	C	4.444e^-4	0.86	INTRON bun
3R	15212735	3R_15212735_SNP [dm3] 3R_19387013_SNP [dm6]	T	G	4.445e^-4	0.86	UPSTREAM CG3734 INTRON Ino80 EXON CR34285
3R	15212738	3R_15212738_SNP [dm3] 3R_19387016_SNP [dm6]	C	T	4.445e^-4	0.86	UPSTREAM CG3734 INTRON Ino80 EXON CR34285
2R	6931468	2R_6931468_SNP [dm3] 2R_11043963_SNP [dm6]	T	C	4.446e^-4	0.86	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7871772	3R_7871772_DEL [dm3] 3R_12046050_DEL [dm6]	GTGGAACTCCT...	G	4.448e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8117984	2R_8117984_SNP [dm3] 2R_12230479_SNP [dm6]	A	C	4.456e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	104693	3L_104693_SNP [dm3] 3L_104693_SNP [dm6]	C	T	4.464e^-4	0.86	INTERGENIC
2L	17601892	2L_17601892_DEL [dm3] 2L_17601892_DEL [dm6]	TTATTTTT	T	4.466e^-4	0.86	INTRON Sytalpha
3R	11824225	3R_11824225_SNP [dm3] 3R_15998503_SNP [dm6]	C	A	4.471e^-4	0.86	INTRON srp
2R	11248676	2R_11248676_SNP [dm3] 2R_15361171_SNP [dm6]	C	T	4.473e^-4	0.86	INTRON unc-5
3R	21675839	3R_21675839_SNP [dm3] 3R_25850117_SNP [dm6]	T	A	4.481e^-4	0.86	DOWNSTREAM CG14545 INTERGENIC
2R	8116777	2R_8116777_SNP [dm3] 2R_12229272_SNP [dm6]	C	A	4.485e^-4	0.86	UTR_5_PRIME CG8854
3L	8744013	3L_8744013_SNP [dm3] 3L_8750913_SNP [dm6]	T	G	4.502e^-4	0.86	DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8166826	2R_8166826_SNP [dm3] 2R_12279321_SNP [dm6]	T	C	4.504e^-4	0.86	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2L	6606428	2L_6606428_SNP [dm3] 2L_6606428_SNP [dm6]	G	A	4.507e^-4	0.86	INTERGENIC
2R	8123868	2R_8123868_SNP [dm3] 2R_12236363_SNP [dm6]	A	T	4.511e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	16497806	2L_16497806_SNP [dm3] 2L_16497806_SNP [dm6]	G	A	4.518e^-4	0.86	INTRON Tpr2
2R	8134980	2R_8134980_SNP [dm3] 2R_12247475_SNP [dm6]	G	A	4.519e^-4	0.86	UPSTREAM CR44315 INTERGENIC
X	7741322	X_7741322_SNP [dm3] X_7847289_SNP [dm6]	T	C	4.538e^-4	0.86	INTERGENIC
2R	8139804	2R_8139804_SNP [dm3] 2R_12252299_SNP [dm6]	C	T	4.538e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2625727	X_2625727_SNP [dm3] X_2731694_SNP [dm6]	G	C	4.545e^-4	0.86	NON_SYNONYMOUS_CODING ttm50 UPSTREAM CG2712	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6817947	3L_6817947_SNP [dm3] 3L_6824847_SNP [dm6]	T	C	4.546e^-4	0.86	INTERGENIC	regulatory region REDfly_CRMs
3R	7878849	3R_7878849_DEL [dm3] 3R_12053127_DEL [dm6]	TTAATGCAACA...	T	4.546e^-4	0.86	INTERGENIC
3R	16860312	3R_16860312_SNP [dm3] 3R_21034590_SNP [dm6]	A	G	4.546e^-4	0.86	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
2L	13754802	2L_13754802_SNP [dm3] 2L_13754802_SNP [dm6]	A	C	4.547e^-4	0.86	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
3L	6285544	3L_6285544_SNP [dm3] 3L_6292444_SNP [dm6]	C	G	4.549e^-4	0.86	INTERGENIC
2R	12547865	2R_12547865_SNP [dm3] 2R_16660360_SNP [dm6]	A	C	4.555e^-4	0.86	INTRON Picot
2R	8090555	2R_8090555_DEL [dm3] 2R_12203050_DEL [dm6]	AAAA	A	4.556e^-4	0.86	INTERGENIC
2L	9113913	2L_9113913_SNP [dm3] 2L_9113913_SNP [dm6]	A	G	4.556e^-4	0.86	DOWNSTREAM Or30a INTERGENIC
X	13754479	X_13754479_SNP [dm3] X_13860446_SNP [dm6]	A	T	4.563e^-4	0.86	UTR_3_PRIME mamo INTRON mamo
X	8552686	X_8552686_SNP [dm3] X_8658653_SNP [dm6]	A	C	4.565e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8164603	2R_8164603_SNP [dm3] 2R_12277098_SNP [dm6]	A	T	4.569e^-4	0.86	UTR_3_PRIME Cam DOWNSTREAM Cam
2R	8087757	2R_8087757_SNP [dm3] 2R_12200252_SNP [dm6]	A	G	4.589e^-4	0.86	UPSTREAM snoRNA:Me28S-C3420b & 1 other INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	1469127	3L_1469127_SNP [dm3] 3L_1469127_SNP [dm6]	C	G	4.591e^-4	0.86	DOWNSTREAM rho INTRON Ptp61F
3R	13071812	3R_13071812_SNP [dm3] 3R_17246090_SNP [dm6]	C	A	4.592e^-4	0.86	INTRON beat-IIb
X	8553910	X_8553910_SNP [dm3] X_8659877_SNP [dm6]	A	G	4.596e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	15277466	3L_15277466_SNP [dm3] 3L_15284366_SNP [dm6]	C	G	4.597e^-4	0.86	INTERGENIC
3R	13328282	3R_13328282_DEL [dm3] 3R_17502560_DEL [dm6]	CC	C	4.603e^-4	0.86	UTR_5_PRIME Dscam3 INTRON Dscam3
3R	15110986	3R_15110986_SNP [dm3] 3R_19285264_SNP [dm6]	T	G	4.606e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_chinmo

Missing results

By genomic position
Variant impact
Gene name

Cuticul_3_Me_C27_C28 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results