DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.922e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.028149
In_3R_K	0.090770
In_3R_Mo	0.001833

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	6.8861	0.032
In_3R_K	6.9902	0.0303
In_3R_Mo	7.3985	0.0247

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1914 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	3422445	X_3422445_SNP [dm3] X_3528412_SNP [dm6]	G	A	1.040e^-6	0.871	INTRON CG32791
X	3422598	X_3422598_SNP [dm3] X_3528565_SNP [dm6]	T	A	1.341e^-6	0.871	INTRON CG32791
3R	10974548	3R_10974548_SNP [dm3] 3R_15148826_SNP [dm6]	T	A	3.235e^-6	0.871	INTERGENIC
2R	14643414	2R_14643414_SNP [dm3] 2R_18755909_SNP [dm6]	A	T	3.476e^-6	0.871	INTRON Cyp12b2
3R	10974560	3R_10974560_SNP [dm3] 3R_15148838_SNP [dm6]	T	C	4.460e^-6	0.871	INTERGENIC
3R	9025755	3R_9025755_SNP [dm3] 3R_13200033_SNP [dm6]	A	T	5.335e^-6	0.871	INTERGENIC
3L	11741814	3L_11741814_SNP [dm3] 3L_11748714_SNP [dm6]	C	T	5.360e^-6	0.871	INTRON CG6024
3R	5963331	3R_5963331_SNP [dm3] 3R_10137609_SNP [dm6]	A	C	6.278e^-6	0.871	INTRON tws	TF binding site mE1_TFBS_bab1
3R	8791257	3R_8791257_SNP [dm3] 3R_12965535_SNP [dm6]	C	T	7.687e^-6	0.871	SYNONYMOUS_CODING Cyp304a1 DOWNSTREAM CG14384 INTRON grsm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14805308	2R_14805308_SNP [dm3] 2R_18917803_SNP [dm6]	C	T	8.028e^-6	0.871	INTRON sano
3R	6099893	3R_6099893_SNP [dm3] 3R_10274171_SNP [dm6]	G	A	9.014e^-6	0.871	INTRON CG43143
3R	8482294	3R_8482294_INS [dm3] 3R_12656572_INS [dm6]	C	CC	9.018e^-6	0.871	INTRON CG6225
3R	11706259	3R_11706259_SNP [dm3] 3R_15880537_SNP [dm6]	A	T	9.283e^-6	0.871	INTERGENIC
X	918217	X_918217_SNP [dm3] X_1024184_SNP [dm6]	C	A	9.568e^-6	0.871	INTRON su_w[a]_ & 2 others
3R	8788977	3R_8788977_SNP [dm3] 3R_12963255_SNP [dm6]	T	A	1.031e^-5	0.871	UPSTREAM Cyp304a1 DOWNSTREAM Spc25 INTRON grsm
3R	8979781	3R_8979781_SNP [dm3] 3R_13154059_SNP [dm6]	G	A	1.076e^-5	0.871	INTRON timeout & 2 others
3R	25398371	3R_25398371_SNP [dm3] 3R_29572649_SNP [dm6]	A	T	1.156e^-5	0.871	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2467736	3L_2467736_SNP [dm3] 3L_2467736_SNP [dm6]	A	T	1.163e^-5	0.871	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	6078825	3R_6078825_SNP [dm3] 3R_10253103_SNP [dm6]	C	A	1.198e^-5	0.871	SYNONYMOUS_CODING CG3999
3R	8353992	3R_8353992_SNP [dm3] 3R_12528270_SNP [dm6]	G	T	1.528e^-5	0.871	INTRON Octbeta3R & 1 other
3R	11675976	3R_11675976_SNP [dm3] 3R_15850254_SNP [dm6]	T	A	1.708e^-5	0.871	INTRON cv-d	TF binding site mE1_TFBS_chinmo
3R	11675822	3R_11675822_SNP [dm3] 3R_15850100_SNP [dm6]	G	A	1.821e^-5	0.871	SYNONYMOUS_CODING cv-d	TF binding site mE1_TFBS_chinmo
3R	6087038	3R_6087038_SNP [dm3] 3R_10261316_SNP [dm6]	T	C	1.895e^-5	0.871	NON_SYNONYMOUS_CODING Sirt6 UPSTREAM pont	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6094882	3R_6094882_SNP [dm3] 3R_10269160_SNP [dm6]	C	T	1.911e^-5	0.871	INTRON CG43143
3R	2253207	3R_2253207_SNP [dm3] 3R_6427485_SNP [dm6]	A	C	1.970e^-5	0.871	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6407818	2R_6407818_SNP [dm3] 2R_10520313_SNP [dm6]	A	C	1.989e^-5	0.871	UTR_3_PRIME lola INTRON lola	TF binding site BDTNP1_TFBS_sna
3R	9133366	3R_9133366_SNP [dm3] 3R_13307644_SNP [dm6]	C	T	1.999e^-5	0.871	INTRON CG32473
3R	7711602	3R_7711602_SNP [dm3] 3R_11885880_SNP [dm6]	G	A	1.999e^-5	0.871	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	7290403	3L_7290403_SNP [dm3] 3L_7297303_SNP [dm6]	C	G	2.140e^-5	0.871	INTRON unc-13-4A
X	12207397	X_12207397_INS [dm3] X_12313364_INS [dm6]	C	CGCCAAGTC	2.178e^-5	0.871	INTRON Ten-a
X	920559	X_920559_SNP [dm3] X_1026526_SNP [dm6]	A	G	2.203e^-5	0.871	UTR_5_PRIME CG32814 & 1 other UPSTREAM CG3021 INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14130276	2R_14130276_SNP [dm3] 2R_18242771_SNP [dm6]	C	T	2.209e^-5	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	11706219	3R_11706219_SNP [dm3] 3R_15880497_SNP [dm6]	T	C	2.578e^-5	0.871	INTERGENIC
3L	12486923	3L_12486923_SNP [dm3] 3L_12493823_SNP [dm6]	C	T	2.626e^-5	0.871	DOWNSTREAM CR45682 INTRON CG10657
3R	9320109	3R_9320109_SNP [dm3] 3R_13494387_SNP [dm6]	A	T	2.659e^-5	0.871	INTERGENIC
3R	9320112	3R_9320112_SNP [dm3] 3R_13494390_SNP [dm6]	G	A	2.659e^-5	0.871	INTERGENIC
3R	8327209	3R_8327209_SNP [dm3] 3R_12501487_SNP [dm6]	G	A	2.721e^-5	0.871	INTERGENIC	transposable element FlyBase
3R	885487	3R_885487_SNP [dm3] 3R_5059765_SNP [dm6]	G	C	2.724e^-5	0.871	INTERGENIC	TF binding site mE1_TFBS_sens
3R	8791530	3R_8791530_SNP [dm3] 3R_12965808_SNP [dm6]	A	C	2.805e^-5	0.871	UTR_3_PRIME Cyp304a1 DOWNSTREAM CG14384 INTRON grsm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10698632	3L_10698632_SNP [dm3] 3L_10705532_SNP [dm6]	C	T	3.013e^-5	0.871	INTERGENIC
2R	10897126	2R_10897126_SNP [dm3] 2R_15009621_SNP [dm6]	A	G	3.088e^-5	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	919050	X_919050_SNP [dm3] X_1025017_SNP [dm6]	C	G	3.103e^-5	0.871	INTRON su_w[a]_ & 2 others	transposable element FlyBase
X	918124	X_918124_SNP [dm3] X_1024091_SNP [dm6]	C	A	3.239e^-5	0.871	INTRON su_w[a]_ & 2 others
3L	2469874	3L_2469874_SNP [dm3] 3L_2469874_SNP [dm6]	T	C	3.313e^-5	0.871	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11706260	3R_11706260_SNP [dm3] 3R_15880538_SNP [dm6]	C	T	3.335e^-5	0.871	INTERGENIC
2L	15194025	2L_15194025_SNP [dm3] 2L_15194025_SNP [dm6]	T	A	3.436e^-5	0.871	INTRON CG4168
3R	5644403	3R_5644403_SNP [dm3] 3R_9818681_SNP [dm6]	C	T	3.459e^-5	0.871	UPSTREAM CG9459 DOWNSTREAM CG9458 INTERGENIC
3R	8865764	3R_8865764_SNP [dm3] 3R_13040042_SNP [dm6]	A	C	3.477e^-5	0.871	NON_SYNONYMOUS_CODING CG11668 DOWNSTREAM snk
3R	6090694	3R_6090694_SNP [dm3] 3R_10264972_SNP [dm6]	C	T	3.488e^-5	0.871	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2467964	3L_2467964_SNP [dm3] 3L_2467964_SNP [dm6]	T	G	3.502e^-5	0.871	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3R	6073936	3R_6073936_SNP [dm3] 3R_10248214_SNP [dm6]	G	A	3.538e^-5	0.871	SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_inv
2L	12383045	2L_12383045_SNP [dm3] 2L_12383045_SNP [dm6]	C	T	3.636e^-5	0.871	INTRON bru-2
3R	8788982	3R_8788982_SNP [dm3] 3R_12963260_SNP [dm6]	T	A	3.646e^-5	0.871	UPSTREAM Cyp304a1 DOWNSTREAM Spc25 INTRON grsm
3R	25890815	3R_25890815_SNP [dm3] 3R_30065093_SNP [dm6]	C	T	3.666e^-5	0.871	INTRON sima
2R	14646077	2R_14646077_SNP [dm3] 2R_18758572_SNP [dm6]	C	T	3.709e^-5	0.871	SPLICE_SITE_REGION Jabba SYNONYMOUS_CODING Jabba	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14805328	2R_14805328_SNP [dm3] 2R_18917823_SNP [dm6]	G	T	3.722e^-5	0.871	INTRON sano
2R	1072336	2R_1072336_INS [dm3] 2R_5184831_INS [dm6]	C	CGCC	3.743e^-5	0.871	INTRON Nipped-A
3L	16215923	3L_16215923_SNP [dm3] 3L_16222823_SNP [dm6]	G	A	3.760e^-5	0.871	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11918730	3L_11918730_SNP [dm3] 3L_11925630_SNP [dm6]	G	C	3.885e^-5	0.871	UPSTREAM CG5718 INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	10162768	3R_10162768_DEL [dm3] 3R_14337046_DEL [dm6]	TAAA	T	3.907e^-5	0.871	INTRON NK7.1	TF binding site mE1_TFBS_kn
3L	18730812	3L_18730812_SNP [dm3] 3L_18737712_SNP [dm6]	T	G	3.975e^-5	0.871	INTERGENIC
3R	27401973	3R_27401973_DEL [dm3] 3R_31576251_DEL [dm6]	TCCT	T	4.043e^-5	0.871	UTR_3_PRIME pygo DOWNSTREAM gammaCOP
3L	2465644	3L_2465644_SNP [dm3] 3L_2465644_SNP [dm6]	G	T	4.062e^-5	0.871	UTR_3_PRIME CG45186 DOWNSTREAM CG45186 INTRON CG45186
3R	10187548	3R_10187548_SNP [dm3] 3R_14361826_SNP [dm6]	G	T	4.126e^-5	0.871	UPSTREAM CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12019622	3R_12019622_SNP [dm3] 3R_16193900_SNP [dm6]	C	T	4.207e^-5	0.871	UPSTREAM sra INTRON sra
2R	9631828	2R_9631828_SNP [dm3] 2R_13744323_SNP [dm6]	G	A	4.220e^-5	0.871	INTRON fas
3R	6097864	3R_6097864_SNP [dm3] 3R_10272142_SNP [dm6]	A	G	4.252e^-5	0.871	INTRON CG43143
3R	9320113	3R_9320113_INS [dm3] 3R_13494391_INS [dm6]	T	TATTATA	4.394e^-5	0.871	INTERGENIC
3L	2471144	3L_2471144_SNP [dm3] 3L_2471144_SNP [dm6]	C	T	4.406e^-5	0.871	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	9133338	3R_9133338_SNP [dm3] 3R_13307616_SNP [dm6]	A	G	4.412e^-5	0.871	INTRON CG32473
3R	25784282	3R_25784282_SNP [dm3] 3R_29958560_SNP [dm6]	T	G	4.424e^-5	0.871	INTRON TkR99D
2R	1072326	2R_1072326_INS [dm3] 2R_5184821_INS [dm6]	T	TT	4.460e^-5	0.871	INTRON Nipped-A
3R	26674736	3R_26674736_SNP [dm3] 3R_30849014_SNP [dm6]	A	C	4.527e^-5	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	9631837	2R_9631837_DEL [dm3] 2R_13744332_DEL [dm6]	CCGC	C	4.536e^-5	0.871	INTRON fas
2L	2823295	2L_2823295_DEL [dm3] 2L_2823295_DEL [dm6]	TCTCT	T	4.664e^-5	0.871	DOWNSTREAM CG3123 INTRON Duox
3L	6748691	3L_6748691_SNP [dm3] 3L_6755591_SNP [dm6]	T	A	4.820e^-5	0.871	SYNONYMOUS_CODING CG10103	TF binding site mE1_TFBS_cad
2R	13133893	2R_13133893_SNP [dm3] 2R_17246388_SNP [dm6]	T	G	4.855e^-5	0.871	UPSTREAM CG18469 DOWNSTREAM CG12699 INTRON mbl
X	921614	X_921614_DEL [dm3] X_1027581_DEL [dm6]	CTC	C	5.109e^-5	0.871	UPSTREAM CG32814 & 1 other DOWNSTREAM CDC45L INTRON su_w[a]_ & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14251897	2L_14251897_SNP [dm3] 2L_14251897_SNP [dm6]	G	A	5.165e^-5	0.871	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	10974645	3R_10974645_DEL [dm3] 3R_15148923_DEL [dm6]	GAAG	G	5.168e^-5	0.871	INTERGENIC
3L	1666702	3L_1666702_DEL [dm3] 3L_1666702_DEL [dm6]	AGGTAGCTCA	A	5.212e^-5	0.871	UPSTREAM snoRNA:Me28S-A2634c DOWNSTREAM snoRNA:Me28S-A2634a & 2 others INTRON Uhg7 EXON snoRNA:Me28S-A2634b	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
3R	8606136	3R_8606136_SNP [dm3] 3R_12780414_SNP [dm6]	T	G	5.260e^-5	0.871	INTRON beat-Vc
2L	6187063	2L_6187063_SNP [dm3] 2L_6187063_SNP [dm6]	T	C	5.294e^-5	0.871	INTRON CG34380	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19387091	2R_19387091_SNP [dm3] 2R_23499568_SNP [dm6]	A	G	5.368e^-5	0.871	UPSTREAM CG13558 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	14428846	2R_14428846_SNP [dm3] 2R_18541341_SNP [dm6]	G	A	5.424e^-5	0.871	INTRON Rgk2
2L	2823404	2L_2823404_DEL [dm3] 2L_2823404_DEL [dm6]	TGCTT	T	5.431e^-5	0.871	DOWNSTREAM CG3123 INTRON Duox
3R	25890739	3R_25890739_SNP [dm3] 3R_30065017_SNP [dm6]	C	A	5.486e^-5	0.871	INTRON sima	TF binding site BDTNP1_TFBS_twi
3R	9320110	3R_9320110_SNP [dm3] 3R_13494388_SNP [dm6]	G	A	5.502e^-5	0.871	INTERGENIC
3L	2471121	3L_2471121_SNP [dm3] 3L_2471121_SNP [dm6]	A	T	5.503e^-5	0.871	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	918937	X_918937_SNP [dm3] X_1024904_SNP [dm6]	C	T	5.503e^-5	0.871	INTRON su_w[a]_ & 2 others	transposable element FlyBase
3L	8850557	3L_8850557_SNP [dm3] 3L_8857457_SNP [dm6]	T	C	5.532e^-5	0.871	INTRON dally
3R	20921929	3R_20921929_SNP [dm3] 3R_25096207_SNP [dm6]	T	C	5.613e^-5	0.871	DOWNSTREAM fd96Cb INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18912293	2L_18912293_SNP [dm3] 2L_18912293_SNP [dm6]	C	T	5.632e^-5	0.871	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5920643	X_5920643_SNP [dm3] X_6026610_SNP [dm6]	T	C	5.648e^-5	0.871	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	6090343	3R_6090343_SNP [dm3] 3R_10264621_SNP [dm6]	C	G	5.686e^-5	0.871	UTR_5_PRIME CG43143 DOWNSTREAM pont	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10355035	2L_10355035_SNP [dm3] 2L_10355035_SNP [dm6]	A	G	5.695e^-5	0.871	INTRON CG5367
3L	14950276	3L_14950276_SNP [dm3] 3L_14957176_SNP [dm6]	G	A	5.716e^-5	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10947030	3L_10947030_SNP [dm3] 3L_10953930_SNP [dm6]	T	C	5.740e^-5	0.871	INTERGENIC
3L	4083717	3L_4083717_SNP [dm3] 3L_4083717_SNP [dm6]	C	T	5.757e^-5	0.871	INTRON Gad1
3R	6079522	3R_6079522_SNP [dm3] 3R_10253800_SNP [dm6]	T	C	5.808e^-5	0.871	SYNONYMOUS_CODING CG3999	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6293479	2R_6293479_SNP [dm3] 2R_10405974_SNP [dm6]	G	A	5.911e^-5	0.871	INTRON CG42732
3R	19551149	3R_19551149_SNP [dm3] 3R_23725427_SNP [dm6]	A	G	5.921e^-5	0.871	INTRON CG10365
2L	11406235	2L_11406235_SNP [dm3] 2L_11406235_SNP [dm6]	G	C	5.942e^-5	0.871	INTERGENIC	regulatory region REDfly_CRMs
2R	10897085	2R_10897085_SNP [dm3] 2R_15009580_SNP [dm6]	T	A	6.177e^-5	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6187090	2L_6187090_SNP [dm3] 2L_6187090_SNP [dm6]	A	G	6.192e^-5	0.871	INTRON CG34380	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6096247	3R_6096247_SNP [dm3] 3R_10270525_SNP [dm6]	C	T	6.219e^-5	0.871	INTRON CG43143
2R	18142679	2R_18142679_SNP [dm3] 2R_22255174_SNP [dm6]	G	T	6.266e^-5	0.871	INTRON dve
2R	18142691	2R_18142691_SNP [dm3] 2R_22255186_SNP [dm6]	C	G	6.266e^-5	0.871	INTRON dve	TF binding site mE1_TFBS_sens
3R	11675947	3R_11675947_SNP [dm3] 3R_15850225_SNP [dm6]	C	A	6.268e^-5	0.871	INTRON cv-d	TF binding site mE1_TFBS_chinmo
3R	11675969	3R_11675969_SNP [dm3] 3R_15850247_SNP [dm6]	A	G	6.268e^-5	0.871	INTRON cv-d	TF binding site mE1_TFBS_chinmo
3L	8198108	3L_8198108_SNP [dm3] 3L_8205008_SNP [dm6]	G	A	6.369e^-5	0.871	INTERGENIC
3R	6659878	3R_6659878_SNP [dm3] 3R_10834156_SNP [dm6]	G	C	6.455e^-5	0.871	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14805327	2R_14805327_SNP [dm3] 2R_18917822_SNP [dm6]	T	G	6.510e^-5	0.871	INTRON sano
3R	11675927	3R_11675927_SNP [dm3] 3R_15850205_SNP [dm6]	G	A	6.602e^-5	0.871	SYNONYMOUS_CODING cv-d	TF binding site mE1_TFBS_chinmo
3L	6171907	3L_6171907_SNP [dm3] 3L_6178807_SNP [dm6]	C	T	6.620e^-5	0.871	UTR_3_PRIME CG7376 & 1 other DOWNSTREAM CG7376
3L	18155916	3L_18155916_SNP [dm3] 3L_18162816_SNP [dm6]	G	A	6.678e^-5	0.871	UPSTREAM CG13699 INTERGENIC
3L	10560907	3L_10560907_DEL [dm3] 3L_10567807_DEL [dm6]	CTGC	C	6.720e^-5	0.871	INTRON A2bp1
2R	18142689	2R_18142689_SNP [dm3] 2R_22255184_SNP [dm6]	T	A	6.754e^-5	0.871	INTRON dve
3L	10940673	3L_10940673_SNP [dm3] 3L_10947573_SNP [dm6]	T	A	6.774e^-5	0.871	INTERGENIC
3R	26177575	3R_26177575_SNP [dm3] 3R_30351853_SNP [dm6]	C	A	6.781e^-5	0.871	INTRON hdc
3R	2105491	3R_2105491_SNP [dm3] 3R_6279769_SNP [dm6]	C	A	6.905e^-5	0.871	INTRON Osi12
X	21309303	X_21309303_SNP [dm3] X_21438276_SNP [dm6]	G	T	6.910e^-5	0.871	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
3R	10595399	3R_10595399_SNP [dm3] 3R_14769677_SNP [dm6]	T	G	6.939e^-5	0.871	INTRON jvl
3R	8988291	3R_8988291_INS [dm3] 3R_13162569_INS [dm6]	G	TGGA	7.072e^-5	0.871
3R	26127018	3R_26127018_SNP [dm3] 3R_30301296_SNP [dm6]	C	A	7.116e^-5	0.871	INTRON hdc
3L	13727250	3L_13727250_SNP [dm3] 3L_13734150_SNP [dm6]	T	C	7.118e^-5	0.871	INTRON bru-3
3L	8397351	3L_8397351_SNP [dm3] 3L_8404251_SNP [dm6]	G	A	7.124e^-5	0.871	SYNONYMOUS_CODING mkg-p UTR_3_PRIME CG33057	TF binding site mE1_TFBS_sens
3R	11658073	3R_11658073_SNP [dm3] 3R_15832351_SNP [dm6]	C	G	7.199e^-5	0.871	SYNONYMOUS_CODING rec DOWNSTREAM CG43318	TF binding site mE1_TFBS_chinmo
3L	8856155	3L_8856155_SNP [dm3] 3L_8863055_SNP [dm6]	A	G	7.205e^-5	0.871	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	8988335	3R_8988335_SNP [dm3] 3R_13162613_SNP [dm6]	C	G	7.213e^-5	0.871	NON_SYNONYMOUS_CODING timeout
X	5920627	X_5920627_SNP [dm3] X_6026594_SNP [dm6]	G	C	7.246e^-5	0.871	INTERGENIC
3R	23245195	3R_23245195_DEL [dm3] 3R_27419473_DEL [dm6]	CCC	C	7.288e^-5	0.871	INTRON side	TF binding site mE1_TFBS_HSA
2R	14805331	2R_14805331_SNP [dm3] 2R_18917826_SNP [dm6]	A	G	7.300e^-5	0.871	INTRON sano
X	21309306	X_21309306_SNP [dm3] X_21438279_SNP [dm6]	T	A	7.338e^-5	0.871	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
2R	14641630	2R_14641630_SNP [dm3] 2R_18754125_SNP [dm6]	G	T	7.402e^-5	0.871	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2
2L	9289503	2L_9289503_SNP [dm3] 2L_9289503_SNP [dm6]	A	T	7.431e^-5	0.871	INTRON Ggamma30A
X	10570185	X_10570185_SNP [dm3] X_10676152_SNP [dm6]	T	A	7.588e^-5	0.871	INTRON X11Lbeta
3R	12472952	3R_12472952_SNP [dm3] 3R_16647230_SNP [dm6]	T	C	7.628e^-5	0.871	UPSTREAM Cctgamma & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3R	11675979	3R_11675979_SNP [dm3] 3R_15850257_SNP [dm6]	G	C	7.692e^-5	0.871	INTRON cv-d	TF binding site mE1_TFBS_chinmo
3L	14851427	3L_14851427_SNP [dm3] 3L_14858327_SNP [dm6]	G	C	7.780e^-5	0.871	INTRON CG17839
3L	1460891	3L_1460891_SNP [dm3] 3L_1460891_SNP [dm6]	T	C	7.809e^-5	0.871	INTRON Ptp61F EXON CR44842	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16084348	2R_16084348_SNP [dm3] 2R_20196843_SNP [dm6]	A	G	7.877e^-5	0.871	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5644609	3R_5644609_SNP [dm3] 3R_9818887_SNP [dm6]	A	G	7.944e^-5	0.871	UPSTREAM CG9459 DOWNSTREAM CG9458 INTERGENIC
3R	11658064	3R_11658064_SNP [dm3] 3R_15832342_SNP [dm6]	A	G	8.029e^-5	0.871	SYNONYMOUS_CODING rec DOWNSTREAM CG43318	TF binding site mE1_TFBS_chinmo
X	917380	X_917380_SNP [dm3] X_1023347_SNP [dm6]	T	G	8.164e^-5	0.871	INTRON su_w[a]_ & 2 others
3L	17198920	3L_17198920_SNP [dm3] 3L_17205820_SNP [dm6]	C	T	8.317e^-5	0.871	INTRON Rbp6
3L	7227711	3L_7227711_SNP [dm3] 3L_7234611_SNP [dm6]	G	C	8.362e^-5	0.871	UTR_5_PRIME CG14826 UPSTREAM CG14826
2L	15625328	2L_15625328_SNP [dm3] 2L_15625328_SNP [dm6]	T	G	8.362e^-5	0.871	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	20489206	2L_20489206_SNP [dm3] 2L_20489206_SNP [dm6]	T	C	8.391e^-5	0.871	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8856015	3L_8856015_SNP [dm3] 3L_8862915_SNP [dm6]	G	A	8.447e^-5	0.871	INTRON dally	TF binding site BDTNP1_TFBS_prd
2R	16145479	2R_16145479_SNP [dm3] 2R_20257974_SNP [dm6]	A	T	8.485e^-5	0.871	UPSTREAM Hsl & 1 other INTRON Hsl	TF binding site mE1_TFBS_cad
3R	25287690	3R_25287690_SNP [dm3] 3R_29461968_SNP [dm6]	G	A	8.512e^-5	0.871	UTR_5_PRIME Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
3R	6080248	3R_6080248_SNP [dm3] 3R_10254526_SNP [dm6]	G	A	8.581e^-5	0.871	SYNONYMOUS_CODING CG3999 DOWNSTREAM Sirt6	TF binding site mE1_TFBS_sens
X	15096745	X_15096745_SNP [dm3] X_15202712_SNP [dm6]	C	A	8.607e^-5	0.871	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	11351159	X_11351159_SNP [dm3] X_11457126_SNP [dm6]	C	T	8.614e^-5	0.871	NON_SYNONYMOUS_CODING HP5 UTR_3_PRIME HP5 DOWNSTREAM HP5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	21309304	X_21309304_SNP [dm3] X_21438277_SNP [dm6]	A	T	8.620e^-5	0.871	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
3L	19359143	3L_19359143_SNP [dm3] 3L_19366043_SNP [dm6]	C	T	8.655e^-5	0.871	INTRON CG32206	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15401192	2L_15401192_SNP [dm3] 2L_15401192_SNP [dm6]	A	G	8.712e^-5	0.871	UPSTREAM CR45374 INTERGENIC
3L	11741851	3L_11741851_SNP [dm3] 3L_11748751_SNP [dm6]	A	T	8.722e^-5	0.871	INTRON CG6024
3R	8240175	3R_8240175_SNP [dm3] 3R_12414453_SNP [dm6]	T	C	8.806e^-5	0.871	NON_SYNONYMOUS_CODING pps UPSTREAM Dip-C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8790982	3R_8790982_SNP [dm3] 3R_12965260_SNP [dm6]	T	C	8.812e^-5	0.871	SYNONYMOUS_CODING Cyp304a1 DOWNSTREAM CG14384 INTRON grsm	TF binding site mE1_TFBS_cad
3L	1457496	3L_1457496_SNP [dm3] 3L_1457496_SNP [dm6]	G	C	8.889e^-5	0.871	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	7640399	3R_7640399_SNP [dm3] 3R_11814677_SNP [dm6]	A	T	8.971e^-5	0.871	DOWNSTREAM glo INTERGENIC
3R	8791727	3R_8791727_SNP [dm3] 3R_12966005_SNP [dm6]	T	A	8.974e^-5	0.871	UTR_3_PRIME CG14384 DOWNSTREAM Cyp304a1 INTRON grsm
2L	12383121	2L_12383121_SNP [dm3] 2L_12383121_SNP [dm6]	C	T	8.999e^-5	0.871	INTRON bru-2
3L	14221033	3L_14221033_SNP [dm3] 3L_14227933_SNP [dm6]	C	G	9.027e^-5	0.871	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	5963425	3R_5963425_SNP [dm3] 3R_10137703_SNP [dm6]	A	G	9.165e^-5	0.871	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2465898	3L_2465898_SNP [dm3] 3L_2465898_SNP [dm6]	C	T	9.226e^-5	0.871	UTR_3_PRIME CG45186 UPSTREAM CG45186 INTRON CG45186
3L	6568814	3L_6568814_SNP [dm3] 3L_6575714_SNP [dm6]	A	T	9.237e^-5	0.871	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_kn
3R	26608891	3R_26608891_SNP [dm3] 3R_30783169_SNP [dm6]	T	C	9.241e^-5	0.871	UPSTREAM zfh1 INTRON zfh1 EXON CR45189	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15402819	2L_15402819_SNP [dm3] 2L_15402819_SNP [dm6]	G	T	9.270e^-5	0.871	INTERGENIC
3R	9368865	3R_9368865_SNP [dm3] 3R_13543143_SNP [dm6]	G	A	9.284e^-5	0.871	DOWNSTREAM CG31337 INTERGENIC
2R	16146219	2R_16146219_SNP [dm3] 2R_20258714_SNP [dm6]	T	G	9.305e^-5	0.871	SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20704174	3L_20704174_SNP [dm3] 3L_20711074_SNP [dm6]	A	T	9.332e^-5	0.871	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18919280	2L_18919280_SNP [dm3] 2L_18919280_SNP [dm6]	C	T	9.432e^-5	0.871	INTRON ssp3
3L	13727579	3L_13727579_DEL [dm3] 3L_13734479_DEL [dm6]	CAC	C	9.458e^-5	0.871	INTRON bru-3
3R	10975070	3R_10975070_SNP [dm3] 3R_15149348_SNP [dm6]	G	A	9.467e^-5	0.871	INTERGENIC
2L	9409339	2L_9409339_SNP [dm3] 2L_9409339_SNP [dm6]	G	A	9.603e^-5	0.871	INTRON Shawl
3L	10940683	3L_10940683_SNP [dm3] 3L_10947583_SNP [dm6]	T	A	9.611e^-5	0.871	INTERGENIC
3R	2287353	3R_2287353_DEL [dm3] 3R_6461631_DEL [dm6]	ACTTAATGCCTAACAACAAC...	A	9.623e^-5	0.871	INTERGENIC
3R	6075497	3R_6075497_SNP [dm3] 3R_10249775_SNP [dm6]	T	C	9.693e^-5	0.871	NON_SYNONYMOUS_CODING CG42795 INTRON CG42795
3R	8789677	3R_8789677_SNP [dm3] 3R_12963955_SNP [dm6]	C	G	9.695e^-5	0.871	DOWNSTREAM Spc25 INTRON grsm & 1 other	TF binding site mE1_TFBS_cad
3R	6531700	3R_6531700_SNP [dm3] 3R_10705978_SNP [dm6]	G	A	9.776e^-5	0.871	NON_SYNONYMOUS_CODING CG31467 UPSTREAM CG31391 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9025716	3R_9025716_SNP [dm3] 3R_13199994_SNP [dm6]	A	G	9.785e^-5	0.871	INTERGENIC
3R	26446408	3R_26446408_SNP [dm3] 3R_30620686_SNP [dm6]	T	G	9.810e^-5	0.871	INTRON CG44954
3L	11918674	3L_11918674_SNP [dm3] 3L_11925574_SNP [dm6]	C	A	9.872e^-5	0.871	UPSTREAM CG5718 INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	20312765	2R_20312765_SNP [dm3] 2R_24425242_SNP [dm6]	A	C	9.943e^-5	0.871	UPSTREAM CG42383 INTRON prom	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10044268	2L_10044268_SNP [dm3] 2L_10044268_SNP [dm6]	G	T	9.946e^-5	0.871	INTERGENIC
3R	2275687	3R_2275687_SNP [dm3] 3R_6449965_SNP [dm6]	C	T	9.955e^-5	0.871	UTR_3_PRIME CG9727 DOWNSTREAM gpp
3R	9012221	3R_9012221_SNP [dm3] 3R_13186499_SNP [dm6]	A	T	9.979e^-5	0.871	UPSTREAM CG8508 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15402110	2L_15402110_SNP [dm3] 2L_15402110_SNP [dm6]	C	A	9.989e^-5	0.871	INTERGENIC
3R	8339244	3R_8339244_SNP [dm3] 3R_12513522_SNP [dm6]	A	C	1.000e^-4	0.871	INTRON Octbeta3R
X	12213474	X_12213474_DEL [dm3] X_12319441_DEL [dm6]	TCAAACTGTTTATAAGTT...	T	1.001e^-4	0.871	INTRON Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6103230	3R_6103230_SNP [dm3] 3R_10277508_SNP [dm6]	C	A	1.006e^-4	0.871	DOWNSTREAM tRNA:S2b:86A INTRON CG43143
2L	9409309	2L_9409309_INS [dm3] 2L_9409309_INS [dm6]	C	TG	1.007e^-4	0.871	INTRON Shawl
2L	2589914	2L_2589914_SNP [dm3] 2L_2589914_SNP [dm6]	C	G	1.008e^-4	0.871	INTERGENIC
3R	8327084	3R_8327084_SNP [dm3] 3R_12501362_SNP [dm6]	A	C	1.021e^-4	0.871	INTERGENIC	transposable element FlyBase
X	5014312	X_5014312_SNP [dm3] X_5120279_SNP [dm6]	G	A	1.021e^-4	0.871	INTRON rg & 1 other
2L	7046231	2L_7046231_INS [dm3] 2L_7046231_INS [dm6]	A	ACACA	1.021e^-4	0.871	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7042103	2L_7042103_SNP [dm3] 2L_7042103_SNP [dm6]	A	C	1.025e^-4	0.871	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18435857	3R_18435857_SNP [dm3] 3R_22610135_SNP [dm6]	G	A	1.038e^-4	0.871	INTRON CG31156 & 1 other	TF binding site mE1_TFBS_inv
3R	11675957	3R_11675957_SNP [dm3] 3R_15850235_SNP [dm6]	G	A	1.042e^-4	0.871	INTRON cv-d	TF binding site mE1_TFBS_chinmo
X	18919952	X_18919952_INS [dm3] X_19025919_INS [dm6]	A	AGGA	1.045e^-4	0.871	UTR_3_PRIME CG43759
2L	20489209	2L_20489209_SNP [dm3] 2L_20489209_SNP [dm6]	T	G	1.046e^-4	0.871	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9835051	3L_9835051_SNP [dm3] 3L_9841951_SNP [dm6]	G	C	1.050e^-4	0.871	INTRON RasGAP1
X	11320877	X_11320877_SNP [dm3] X_11426844_SNP [dm6]	C	A	1.060e^-4	0.871	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6699278	3R_6699278_SNP [dm3] 3R_10873556_SNP [dm6]	T	C	1.069e^-4	0.871	SYNONYMOUS_CODING CG4596	TF binding site mE1_TFBS_cad
3R	18746777	3R_18746777_SNP [dm3] 3R_22921055_SNP [dm6]	C	T	1.076e^-4	0.871	INTRON klg
3R	2258095	3R_2258095_SNP [dm3] 3R_6432373_SNP [dm6]	G	T	1.086e^-4	0.871	INTRON gpp
2L	17888905	2L_17888905_SNP [dm3] 2L_17888905_SNP [dm6]	T	C	1.092e^-4	0.871	INTERGENIC
2R	9475185	2R_9475185_SNP [dm3] 2R_13587680_SNP [dm6]	C	T	1.094e^-4	0.871	INTRON CG6191 & 1 other
2R	6496990	2R_6496990_SNP [dm3] 2R_10609485_SNP [dm6]	A	T	1.097e^-4	0.871	INTRON psq
3R	8986186	3R_8986186_SNP [dm3] 3R_13160464_SNP [dm6]	T	A	1.097e^-4	0.871	INTRON timeout
3R	21480574	3R_21480574_SNP [dm3] 3R_25654852_SNP [dm6]	A	T	1.098e^-4	0.871	INTRON Tnks	TF binding site mE1_TFBS_chinmo
X	3315386	X_3315386_SNP [dm3] X_3421353_SNP [dm6]	T	C	1.102e^-4	0.871	INTRON CR44999 & 1 other
3R	26908414	3R_26908414_SNP [dm3] 3R_31082692_SNP [dm6]	T	C	1.103e^-4	0.871	NON_SYNONYMOUS_CODING Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18155915	3L_18155915_SNP [dm3] 3L_18162815_SNP [dm6]	A	T	1.105e^-4	0.871	UPSTREAM CG13699 INTERGENIC
3R	19551148	3R_19551148_SNP [dm3] 3R_23725426_SNP [dm6]	G	A	1.107e^-4	0.871	INTRON CG10365
X	918783	X_918783_SNP [dm3] X_1024750_SNP [dm6]	C	A	1.115e^-4	0.871	INTRON su_w[a]_ & 2 others
3L	5120300	3L_5120300_DEL [dm3] 3L_5127200_DEL [dm6]	GCAA	G	1.125e^-4	0.871	INTERGENIC
3R	8900984	3R_8900984_SNP [dm3] 3R_13075262_SNP [dm6]	C	T	1.127e^-4	0.871	SYNONYMOUS_CODING sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	6384029	2R_6384029_SNP [dm3] 2R_10496524_SNP [dm6]	G	T	1.129e^-4	0.871	UTR_3_PRIME lola INTRON lola
3L	14267535	3L_14267535_SNP [dm3] 3L_14274435_SNP [dm6]	G	A	1.129e^-4	0.871	UTR_5_PRIME fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	11933551	2R_11933551_SNP [dm3] 2R_16046046_SNP [dm6]	T	G	1.132e^-4	0.871	UTR_3_PRIME SP2353
2L	9409426	2L_9409426_SNP [dm3] 2L_9409426_SNP [dm6]	A	G	1.132e^-4	0.871	INTRON Shawl
2L	8905033	2L_8905033_SNP [dm3] 2L_8905033_SNP [dm6]	A	T	1.133e^-4	0.871	INTRON CG34398
3L	16347368	3L_16347368_SNP [dm3] 3L_16354268_SNP [dm6]	C	G	1.142e^-4	0.871	NON_SYNONYMOUS_CODING Pdh UTR_5_PRIME Pdh DOWNSTREAM CG4933 & 1 other
2R	16084350	2R_16084350_SNP [dm3] 2R_20196845_SNP [dm6]	A	G	1.142e^-4	0.871	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14927445	3L_14927445_SNP [dm3] 3L_14934345_SNP [dm6]	A	T	1.147e^-4	0.871	INTRON DCX-EMAP
2L	13665220	2L_13665220_SNP [dm3] 2L_13665220_SNP [dm6]	G	A	1.155e^-4	0.871	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13897989	2L_13897989_SNP [dm3] 2L_13897989_SNP [dm6]	G	A	1.160e^-4	0.871	UTR_3_PRIME CenG1A DOWNSTREAM Smg5
2R	10897097	2R_10897097_DEL [dm3] 2R_15009592_DEL [dm6]	TCGCTATAATATACATAT...	T	1.162e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2466629	3L_2466629_DEL [dm3] 3L_2466629_DEL [dm6]	CA	C	1.167e^-4	0.871	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12796582	2R_12796582_SNP [dm3] 2R_16909077_SNP [dm6]	A	T	1.178e^-4	0.871	INTERGENIC
3L	18973684	3L_18973684_SNP [dm3] 3L_18980584_SNP [dm6]	T	C	1.189e^-4	0.871	DOWNSTREAM CR45689 INTERGENIC
2L	14129678	2L_14129678_SNP [dm3] 2L_14129678_SNP [dm6]	A	G	1.198e^-4	0.871	INTERGENIC
3R	8327829	3R_8327829_SNP [dm3] 3R_12502107_SNP [dm6]	C	G	1.199e^-4	0.871	UPSTREAM Hsp70Bbb INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_Trl
2L	14129675	2L_14129675_SNP [dm3] 2L_14129675_SNP [dm6]	C	T	1.204e^-4	0.871	INTERGENIC
3L	17388715	3L_17388715_DEL [dm3] 3L_17395615_DEL [dm6]	TTTCGAT	T	1.207e^-4	0.871	DOWNSTREAM blot INTERGENIC
2L	1404721	2L_1404721_SNP [dm3] 2L_1404721_SNP [dm6]	G	T	1.221e^-4	0.871	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3R	8986185	3R_8986185_SNP [dm3] 3R_13160463_SNP [dm6]	G	A	1.230e^-4	0.871	INTRON timeout
3L	2464985	3L_2464985_SNP [dm3] 3L_2464985_SNP [dm6]	A	G	1.230e^-4	0.871	DOWNSTREAM CG45186 INTRON CG45186
3R	5963833	3R_5963833_SNP [dm3] 3R_10138111_SNP [dm6]	A	T	1.233e^-4	0.871	INTRON tws	TF binding site mE1_TFBS_bab1
3R	22599737	3R_22599737_SNP [dm3] 3R_26774015_SNP [dm6]	G	A	1.235e^-4	0.871	INTERGENIC
3R	26909065	3R_26909065_SNP [dm3] 3R_31083343_SNP [dm6]	A	T	1.239e^-4	0.871	UTR_3_PRIME Sox100B
3L	2469114	3L_2469114_SNP [dm3] 3L_2469114_SNP [dm6]	A	T	1.239e^-4	0.871	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8986293	3R_8986293_SNP [dm3] 3R_13160571_SNP [dm6]	T	C	1.240e^-4	0.871	INTRON timeout
3R	8346724	3R_8346724_SNP [dm3] 3R_12521002_SNP [dm6]	C	T	1.245e^-4	0.871	INTRON Octbeta3R
3R	18435860	3R_18435860_SNP [dm3] 3R_22610138_SNP [dm6]	A	T	1.260e^-4	0.871	INTRON CG31156 & 1 other	TF binding site mE1_TFBS_inv
X	15695185	X_15695185_SNP [dm3] X_15801152_SNP [dm6]	T	A	1.273e^-4	0.871	DOWNSTREAM PGRP-LE & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6405184	2L_6405184_SNP [dm3] 2L_6405184_SNP [dm6]	C	A	1.276e^-4	0.871	INTRON CG42368
2L	14127387	2L_14127387_SNP [dm3] 2L_14127387_SNP [dm6]	G	A	1.283e^-4	0.871	INTERGENIC
3L	8866515	3L_8866515_SNP [dm3] 3L_8873415_SNP [dm6]	A	G	1.290e^-4	0.871	INTRON dally	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14129681	2L_14129681_DEL [dm3] 2L_14129681_DEL [dm6]	TAAAC	T	1.291e^-4	0.871	INTERGENIC
2L	16388013	2L_16388013_INS [dm3] 2L_16388013_INS [dm6]	G	GG	1.292e^-4	0.871	INTERGENIC
3R	8990896	3R_8990896_SNP [dm3] 3R_13165174_SNP [dm6]	G	A	1.302e^-4	0.871	INTERGENIC
X	917694	X_917694_SNP [dm3] X_1023661_SNP [dm6]	G	A	1.308e^-4	0.871	INTRON su_w[a]_ & 2 others
X	918810	X_918810_SNP [dm3] X_1024777_SNP [dm6]	C	A	1.311e^-4	0.871	INTRON su_w[a]_ & 2 others	transposable element FlyBase
2R	13789749	2R_13789749_SNP [dm3] 2R_17902244_SNP [dm6]	C	T	1.312e^-4	0.871	INTRON Elk
3R	6539726	3R_6539726_INS [dm3] 3R_10714004_INS [dm6]	T	TC	1.315e^-4	0.871	UPSTREAM CG4073 INTERGENIC
3R	8789893	3R_8789893_SNP [dm3] 3R_12964171_SNP [dm6]	C	T	1.321e^-4	0.871	SYNONYMOUS_CODING Cyp304a1 DOWNSTREAM Spc25 INTRON grsm	TF binding site mE1_TFBS_cad
3R	9119182	3R_9119182_SNP [dm3] 3R_13293460_SNP [dm6]	A	G	1.325e^-4	0.871	UPSTREAM wntD INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3L	18208348	3L_18208348_SNP [dm3] 3L_18215248_SNP [dm6]	T	C	1.332e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	25397149	3R_25397149_SNP [dm3] 3R_29571427_SNP [dm6]	T	C	1.335e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8844895	3L_8844895_SNP [dm3] 3L_8851795_SNP [dm6]	A	C	1.339e^-4	0.871	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	2285727	3R_2285727_SNP [dm3] 3R_6460005_SNP [dm6]	T	C	1.341e^-4	0.871	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18435874	3R_18435874_SNP [dm3] 3R_22610152_SNP [dm6]	T	C	1.342e^-4	0.871	INTRON CG31156 & 1 other	TF binding site mE1_TFBS_inv
3R	6539705	3R_6539705_INS [dm3] 3R_10713983_INS [dm6]	C	CGC	1.354e^-4	0.871	UPSTREAM CG4073 INTERGENIC
2L	14499278	2L_14499278_SNP [dm3] 2L_14499278_SNP [dm6]	C	A	1.361e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	10870046	2L_10870046_SNP [dm3] 2L_10870046_SNP [dm6]	G	C	1.361e^-4	0.871	UPSTREAM CG12517 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13717371	3R_13717371_SNP [dm3] 3R_17891649_SNP [dm6]	A	T	1.363e^-4	0.871	INTRON Rim
X	3876431	X_3876431_SNP [dm3] X_3982398_SNP [dm6]	G	A	1.366e^-4	0.871	INTERGENIC
3R	14275482	3R_14275482_SNP [dm3] 3R_18449760_SNP [dm6]	C	G	1.368e^-4	0.871	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11309725	2R_11309725_SNP [dm3] 2R_15422220_SNP [dm6]	G	A	1.368e^-4	0.871	DOWNSTREAM CG30472 INTRON CG43729	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8145327	3R_8145327_SNP [dm3] 3R_12319605_SNP [dm6]	C	A	1.373e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14129677	2L_14129677_SNP [dm3] 2L_14129677_SNP [dm6]	A	G	1.382e^-4	0.871	INTERGENIC
3R	8327192	3R_8327192_SNP [dm3] 3R_12501470_SNP [dm6]	T	C	1.383e^-4	0.871	INTERGENIC	transposable element FlyBase
X	16792941	X_16792941_SNP [dm3] X_16898908_SNP [dm6]	T	A	1.395e^-4	0.871	INTERGENIC
3L	11197730	3L_11197730_SNP [dm3] 3L_11204630_SNP [dm6]	G	A	1.410e^-4	0.871	INTRON Plod
3R	12471363	3R_12471363_SNP [dm3] 3R_16645641_SNP [dm6]	T	A	1.418e^-4	0.871	NON_SYNONYMOUS_CODING CG10324 DOWNSTREAM CG10326
2L	9678451	2L_9678451_SNP [dm3] 2L_9678451_SNP [dm6]	T	A	1.418e^-4	0.871	INTERGENIC
X	6424690	X_6424690_SNP [dm3] X_6530657_SNP [dm6]	A	C	1.425e^-4	0.871	SYNONYMOUS_CODING Spat DOWNSTREAM RpL7A & 1 other	TF binding site mE1_TFBS_cad
2L	14251891	2L_14251891_SNP [dm3] 2L_14251891_SNP [dm6]	G	A	1.429e^-4	0.871	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	8557776	3R_8557776_SNP [dm3] 3R_12732054_SNP [dm6]	A	G	1.429e^-4	0.871	INTERGENIC
X	17546722	X_17546722_SNP [dm3] X_17652689_SNP [dm6]	A	G	1.429e^-4	0.871	UPSTREAM RhoGAPp190 DOWNSTREAM IntS2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	15259964	3R_15259964_SNP [dm3] 3R_19434242_SNP [dm6]	A	T	1.438e^-4	0.871	INTRON CG31221
X	17546785	X_17546785_SNP [dm3] X_17652752_SNP [dm6]	T	A	1.438e^-4	0.871	UPSTREAM RhoGAPp190 DOWNSTREAM IntS2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_Trl
3R	12471466	3R_12471466_SNP [dm3] 3R_16645744_SNP [dm6]	T	C	1.439e^-4	0.871	SYNONYMOUS_CODING CG10324 DOWNSTREAM CG10326
3R	26908939	3R_26908939_SNP [dm3] 3R_31083217_SNP [dm6]	G	A	1.441e^-4	0.871	UTR_3_PRIME Sox100B	TF binding site mE1_TFBS_cad
2R	11933554	2R_11933554_SNP [dm3] 2R_16046049_SNP [dm6]	C	A	1.452e^-4	0.871	UTR_3_PRIME SP2353
3L	8856186	3L_8856186_SNP [dm3] 3L_8863086_SNP [dm6]	T	C	1.465e^-4	0.871	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	9409362	2L_9409362_SNP [dm3] 2L_9409362_SNP [dm6]	C	A	1.476e^-4	0.871	INTRON Shawl
3R	14014995	3R_14014995_SNP [dm3] 3R_18189273_SNP [dm6]	T	C	1.480e^-4	0.871	UPSTREAM CG12321 INTRON MED17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	17546492	X_17546492_SNP [dm3] X_17652459_SNP [dm6]	C	A	1.485e^-4	0.871	START_GAINED RhoGAPp190 UTR_5_PRIME RhoGAPp190 DOWNSTREAM IntS2 INTRON RhoGAPp190	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	11578971	X_11578971_SNP [dm3] X_11684938_SNP [dm6]	A	T	1.489e^-4	0.871	INTRON bif
3R	25394829	3R_25394829_SNP [dm3] 3R_29569107_SNP [dm6]	A	T	1.501e^-4	0.871	INTERGENIC
2L	15403510	2L_15403510_SNP [dm3] 2L_15403510_SNP [dm6]	G	A	1.502e^-4	0.871	INTERGENIC	TF binding site mE1_TFBS_cad
X	2454366	X_2454366_SNP [dm3] X_2560333_SNP [dm6]	T	A	1.504e^-4	0.871	INTRON Pdfr
3R	18435856	3R_18435856_SNP [dm3] 3R_22610134_SNP [dm6]	T	G	1.512e^-4	0.871	INTRON CG31156 & 1 other	TF binding site mE1_TFBS_inv
2R	18023678	2R_18023678_SNP [dm3] 2R_22136173_SNP [dm6]	A	G	1.518e^-4	0.871	UPSTREAM a INTERGENIC
3R	8353993	3R_8353993_SNP [dm3] 3R_12528271_SNP [dm6]	A	T	1.518e^-4	0.871	INTRON Octbeta3R & 1 other
3L	18155912	3L_18155912_SNP [dm3] 3L_18162812_SNP [dm6]	G	A	1.524e^-4	0.871	UPSTREAM CG13699 INTERGENIC
2L	15402084	2L_15402084_SNP [dm3] 2L_15402084_SNP [dm6]	T	C	1.526e^-4	0.871	INTERGENIC
3R	26675947	3R_26675947_SNP [dm3] 3R_30850225_SNP [dm6]	C	T	1.534e^-4	0.871	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	26675960	3R_26675960_DEL [dm3] 3R_30850238_DEL [dm6]	TG	T	1.534e^-4	0.871	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	26675975	3R_26675975_SNP [dm3] 3R_30850253_SNP [dm6]	T	C	1.534e^-4	0.871	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2R	7025706	2R_7025706_SNP [dm3] 2R_11138201_SNP [dm6]	C	A	1.536e^-4	0.871	INTRON BBS4
3L	5909797	3L_5909797_DEL [dm3] 3L_5916697_DEL [dm6]	AA	A	1.536e^-4	0.871	INTRON CG13288
3L	2471937	3L_2471937_SNP [dm3] 3L_2471937_SNP [dm6]	G	T	1.540e^-4	0.871	INTRON CG45186	TF binding site mE1_TFBS_HSA
3R	12473827	3R_12473827_SNP [dm3] 3R_16648105_SNP [dm6]	C	A	1.545e^-4	0.871	INTRON Cctgamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8811821	3L_8811821_SNP [dm3] 3L_8818721_SNP [dm6]	G	T	1.547e^-4	0.871	INTERGENIC
3R	13416083	3R_13416083_SNP [dm3] 3R_17590361_SNP [dm6]	G	A	1.549e^-4	0.871	INTERGENIC
3L	9955965	3L_9955965_SNP [dm3] 3L_9962865_SNP [dm6]	C	T	1.558e^-4	0.871	INTRON CG34356	TF binding site mE1_TFBS_kn
X	16792964	X_16792964_SNP [dm3] X_16898931_SNP [dm6]	G	A	1.560e^-4	0.871	INTERGENIC
X	16792977	X_16792977_SNP [dm3] X_16898944_SNP [dm6]	A	T	1.560e^-4	0.871	INTERGENIC
3R	3369323	3R_3369323_SNP [dm3] 3R_7543601_SNP [dm6]	G	A	1.561e^-4	0.871	INTRON alpha-Est2
3R	2324575	3R_2324575_SNP [dm3] 3R_6498853_SNP [dm6]	T	A	1.569e^-4	0.871	INTERGENIC
3L	11741805	3L_11741805_SNP [dm3] 3L_11748705_SNP [dm6]	G	T	1.569e^-4	0.871	INTRON CG6024
2L	15728926	2L_15728926_SNP [dm3] 2L_15728926_SNP [dm6]	G	A	1.573e^-4	0.871	SYNONYMOUS_CODING CycE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15401201	2L_15401201_SNP [dm3] 2L_15401201_SNP [dm6]	G	A	1.574e^-4	0.871	UPSTREAM CR45374 INTERGENIC
3R	9025923	3R_9025923_SNP [dm3] 3R_13200201_SNP [dm6]	C	G	1.575e^-4	0.871	INTERGENIC
3R	8986205	3R_8986205_SNP [dm3] 3R_13160483_SNP [dm6]	A	T	1.579e^-4	0.871	INTRON timeout
3R	25272837	3R_25272837_SNP [dm3] 3R_29447115_SNP [dm6]	C	T	1.581e^-4	0.871	INTRON Ptp99A
2R	11192672	2R_11192672_SNP [dm3] 2R_15305167_SNP [dm6]	G	A	1.586e^-4	0.871	INTRON Trpm
3R	20450482	3R_20450482_SNP [dm3] 3R_24624760_SNP [dm6]	G	T	1.587e^-4	0.871	SYNONYMOUS_CODING Syx18 UPSTREAM atl DOWNSTREAM mld
3L	17698840	3L_17698840_DEL [dm3] 3L_17705740_DEL [dm6]	TG	T	1.593e^-4	0.871	INTRON Ccn
3L	2467345	3L_2467345_SNP [dm3] 3L_2467345_SNP [dm6]	G	T	1.594e^-4	0.871	DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6739781	2R_6739781_SNP [dm3] 2R_10852276_SNP [dm6]	T	G	1.597e^-4	0.871	INTRON CG30015
X	19256558	X_19256558_SNP [dm3] X_19362525_SNP [dm6]	C	T	1.598e^-4	0.871	INTRON kek5	TF binding site BDTNP1_TFBS_dl
3R	20553405	3R_20553405_SNP [dm3] 3R_24727683_SNP [dm6]	T	A	1.600e^-4	0.871	INTRON tok	TF binding site BDTNP1_TFBS_dl
2L	15407790	2L_15407790_SNP [dm3] 2L_15407790_SNP [dm6]	C	T	1.603e^-4	0.871	INTERGENIC
3L	9017587	3L_9017587_SNP [dm3] 3L_9024487_SNP [dm6]	C	T	1.612e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8986215	3R_8986215_SNP [dm3] 3R_13160493_SNP [dm6]	T	A	1.614e^-4	0.871	INTRON timeout
2L	13821899	2L_13821899_SNP [dm3] 2L_13821899_SNP [dm6]	G	A	1.636e^-4	0.871	SYNONYMOUS_CODING b	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1454346	3L_1454346_SNP [dm3] 3L_1454346_SNP [dm6]	C	A	1.638e^-4	0.871	INTRON Ptp61F
X	2615702	X_2615702_SNP [dm3] X_2721669_SNP [dm6]	G	T	1.640e^-4	0.871	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	6151217	2R_6151217_SNP [dm3] 2R_10263712_SNP [dm6]	C	A	1.641e^-4	0.871	EXON CR30009
2L	15194085	2L_15194085_SNP [dm3] 2L_15194085_SNP [dm6]	T	A	1.641e^-4	0.871	INTRON CG4168
3L	18973760	3L_18973760_SNP [dm3] 3L_18980660_SNP [dm6]	A	T	1.643e^-4	0.871	INTERGENIC
3R	13691011	3R_13691011_SNP [dm3] 3R_17865289_SNP [dm6]	C	T	1.643e^-4	0.871	SYNONYMOUS_CODING tinc
3R	12474401	3R_12474401_SNP [dm3] 3R_16648679_SNP [dm6]	T	A	1.643e^-4	0.871	INTRON Cctgamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14000543	2L_14000543_SNP [dm3] 2L_14000543_SNP [dm6]	A	T	1.649e^-4	0.871	INTRON rk
3L	2468801	3L_2468801_SNP [dm3] 3L_2468801_SNP [dm6]	G	C	1.652e^-4	0.871	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3L	11002850	3L_11002850_SNP [dm3] 3L_11009750_SNP [dm6]	C	T	1.659e^-4	0.871	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	4759593	3L_4759593_SNP [dm3] 3L_4759593_SNP [dm6]	G	A	1.667e^-4	0.871	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8856179	3L_8856179_SNP [dm3] 3L_8863079_SNP [dm6]	C	T	1.668e^-4	0.871	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	12471727	3R_12471727_SNP [dm3] 3R_16646005_SNP [dm6]	C	T	1.668e^-4	0.871	DOWNSTREAM CG10326 INTRON CG10324
3L	9602219	3L_9602219_SNP [dm3] 3L_9609119_SNP [dm6]	A	G	1.675e^-4	0.871	SYNONYMOUS_CODING CG3280
2R	20131798	2R_20131798_SNP [dm3] 2R_24244275_SNP [dm6]	G	C	1.678e^-4	0.871	INTRON nord
3R	12472943	3R_12472943_SNP [dm3] 3R_16647221_SNP [dm6]	G	T	1.689e^-4	0.871	UPSTREAM Cctgamma & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3R	19793214	3R_19793214_SNP [dm3] 3R_23967492_SNP [dm6]	C	A	1.690e^-4	0.871	INTRON CG31140
3L	1825298	3L_1825298_SNP [dm3] 3L_1825298_SNP [dm6]	T	C	1.690e^-4	0.871	INTRON Cpr62Ba
2R	12144940	2R_12144940_SNP [dm3] 2R_16257435_SNP [dm6]	A	C	1.692e^-4	0.871	INTRON CngA
X	11566147	X_11566147_SNP [dm3] X_11672114_SNP [dm6]	C	T	1.693e^-4	0.871	INTRON Ptp10D
2L	13665279	2L_13665279_SNP [dm3] 2L_13665279_SNP [dm6]	G	T	1.696e^-4	0.871	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	6292480	2R_6292480_INS [dm3] 2R_10404975_INS [dm6]	G	GAG	1.698e^-4	0.871	INTRON CG42732
2L	9170017	2L_9170017_SNP [dm3] 2L_9170017_SNP [dm6]	A	T	1.700e^-4	0.871	INTRON tai
3R	26909061	3R_26909061_SNP [dm3] 3R_31083339_SNP [dm6]	G	C	1.703e^-4	0.871	UTR_3_PRIME Sox100B
3R	10186677	3R_10186677_SNP [dm3] 3R_14360955_SNP [dm6]	T	C	1.717e^-4	0.871	SYNONYMOUS_CODING CG31320 INTRON NK7.1
X	3876460	X_3876460_INS [dm3] X_3982427_INS [dm6]	C	TG	1.717e^-4	0.871	INTERGENIC
X	3876482	X_3876482_SNP [dm3] X_3982449_SNP [dm6]	G	A	1.717e^-4	0.871	INTERGENIC
3L	9958423	3L_9958423_SNP [dm3] 3L_9965323_SNP [dm6]	T	C	1.718e^-4	0.871	UTR_3_PRIME CG34356
2L	8905603	2L_8905603_SNP [dm3] 2L_8905603_SNP [dm6]	A	C	1.733e^-4	0.871	INTRON CG34398
3R	20503510	3R_20503510_SNP [dm3] 3R_24677788_SNP [dm6]	T	C	1.735e^-4	0.871	INTRON slo
2R	6684624	2R_6684624_SNP [dm3] 2R_10797119_SNP [dm6]	G	A	1.741e^-4	0.871	INTRON CG33144
2L	8891624	2L_8891624_SNP [dm3] 2L_8891624_SNP [dm6]	T	A	1.741e^-4	0.871	INTRON CG42713
X	12213531	X_12213531_SNP [dm3] X_12319498_SNP [dm6]	A	T	1.744e^-4	0.871	INTRON Ten-a	TF binding site mE1_TFBS_cad
3R	19793206	3R_19793206_SNP [dm3] 3R_23967484_SNP [dm6]	T	A	1.746e^-4	0.871	INTRON CG31140
2R	13394909	2R_13394909_SNP [dm3] 2R_17507404_SNP [dm6]	C	T	1.755e^-4	0.871	UTR_3_PRIME CG43164 INTRON CG43164	TF binding site mE1_TFBS_cad
3L	12828846	3L_12828846_SNP [dm3] 3L_12835746_SNP [dm6]	T	C	1.756e^-4	0.871	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	5915077	3R_5915077_SNP [dm3] 3R_10089355_SNP [dm6]	C	G	1.758e^-4	0.871	EXON CR45054	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9320507	3R_9320507_SNP [dm3] 3R_13494785_SNP [dm6]	A	G	1.770e^-4	0.871	INTERGENIC
3L	2474736	3L_2474736_SNP [dm3] 3L_2474736_SNP [dm6]	T	C	1.774e^-4	0.871	UTR_3_PRIME CG16762 INTRON CG45186
3R	26618121	3R_26618121_SNP [dm3] 3R_30792399_SNP [dm6]	T	C	1.780e^-4	0.871	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
2R	9968957	2R_9968957_SNP [dm3] 2R_14081452_SNP [dm6]	G	A	1.784e^-4	0.871	INTRON Prosap
3R	20322263	3R_20322263_SNP [dm3] 3R_24496541_SNP [dm6]	A	G	1.792e^-4	0.871	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14130521	2R_14130521_DEL [dm3] 2R_18243016_DEL [dm6]	CA	C	1.806e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7025707	2R_7025707_SNP [dm3] 2R_11138202_SNP [dm6]	T	C	1.807e^-4	0.871	INTRON BBS4
2L	20138004	2L_20138004_SNP [dm3] 2L_20138004_SNP [dm6]	T	C	1.814e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2474670	3L_2474670_SNP [dm3] 3L_2474670_SNP [dm6]	G	T	1.822e^-4	0.871	UTR_3_PRIME CG16762 INTRON CG45186
X	941105	X_941105_SNP [dm3] X_1047072_SNP [dm6]	C	G	1.840e^-4	0.871	UPSTREAM CR44779 DOWNSTREAM CG42259 INTERGENIC
3L	14844177	3L_14844177_SNP [dm3] 3L_14851077_SNP [dm6]	G	A	1.841e^-4	0.871	INTRON CG17839
3R	2269787	3R_2269787_SNP [dm3] 3R_6444065_SNP [dm6]	C	A	1.842e^-4	0.871	NON_SYNONYMOUS_CODING gpp
3R	8790874	3R_8790874_SNP [dm3] 3R_12965152_SNP [dm6]	C	A	1.844e^-4	0.871	NON_SYNONYMOUS_CODING Cyp304a1 DOWNSTREAM CG14384 INTRON grsm	TF binding site mE1_TFBS_cad
3L	5862887	3L_5862887_SNP [dm3] 3L_5869787_SNP [dm6]	T	C	1.848e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7043986	2L_7043986_SNP [dm3] 2L_7043986_SNP [dm6]	G	A	1.863e^-4	0.871	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	26183959	3R_26183959_SNP [dm3] 3R_30358237_SNP [dm6]	C	T	1.863e^-4	0.871	INTRON hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8741140	3R_8741140_SNP [dm3] 3R_12915418_SNP [dm6]	G	A	1.866e^-4	0.871	UPSTREAM beat-Vb INTERGENIC
2L	8323714	2L_8323714_SNP [dm3] 2L_8323714_SNP [dm6]	A	C	1.868e^-4	0.871	INTRON CG7781
3R	23177373	3R_23177373_SNP [dm3] 3R_27351651_SNP [dm6]	T	A	1.871e^-4	0.871	INTRON CG42534
3L	3046522	3L_3046522_SNP [dm3] 3L_3046522_SNP [dm6]	A	G	1.872e^-4	0.871	UPSTREAM Sk2 INTRON scramb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	8405870	3R_8405870_SNP [dm3] 3R_12580148_SNP [dm6]	G	T	1.887e^-4	0.871	INTRON Octbeta2R
3R	6669804	3R_6669804_SNP [dm3] 3R_10844082_SNP [dm6]	C	T	1.890e^-4	0.871	SYNONYMOUS_CODING Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	6669810	3R_6669810_SNP [dm3] 3R_10844088_SNP [dm6]	G	A	1.890e^-4	0.871	SYNONYMOUS_CODING Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	11351140	X_11351140_SNP [dm3] X_11457107_SNP [dm6]	T	C	1.896e^-4	0.871	SYNONYMOUS_CODING HP5 UTR_3_PRIME HP5 DOWNSTREAM HP5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1047458	2L_1047458_INS [dm3] 2L_1047458_INS [dm6]	G	GG	1.897e^-4	0.871	INTRON IA-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21894393	X_21894393_SNP [dm3] X_22492557_SNP [dm6]	A	G	1.897e^-4	0.871	INTRON l_1_G0196
3L	8415533	3L_8415533_SNP [dm3] 3L_8422433_SNP [dm6]	T	G	1.901e^-4	0.871	UPSTREAM CG32354 INTERGENIC
3R	8340383	3R_8340383_SNP [dm3] 3R_12514661_SNP [dm6]	C	G	1.901e^-4	0.871	INTRON Octbeta3R
X	15472368	X_15472368_SNP [dm3] X_15578335_SNP [dm6]	T	C	1.905e^-4	0.871	UTR_5_PRIME CG7872 UPSTREAM cerv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6293751	2R_6293751_SNP [dm3] 2R_10406246_SNP [dm6]	T	G	1.910e^-4	0.871	DOWNSTREAM CG12898 INTRON CG42732
2L	15734504	2L_15734504_SNP [dm3] 2L_15734504_SNP [dm6]	C	T	1.913e^-4	0.871	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	9025722	3R_9025722_SNP [dm3] 3R_13200000_SNP [dm6]	T	C	1.914e^-4	0.871	INTERGENIC
2L	17608579	2L_17608579_SNP [dm3] 2L_17608579_SNP [dm6]	G	A	1.916e^-4	0.871	INTERGENIC
2L	10428969	2L_10428969_SNP [dm3] 2L_10428969_SNP [dm6]	G	A	1.926e^-4	0.871	DOWNSTREAM KdelR & 1 other INTRON CG5188	TF binding site BDTNP1_TFBS_dl
3R	21986351	3R_21986351_SNP [dm3] 3R_26160629_SNP [dm6]	G	T	1.937e^-4	0.871	INTERGENIC
3R	6078375	3R_6078375_SNP [dm3] 3R_10252653_SNP [dm6]	G	A	1.942e^-4	0.871	NON_SYNONYMOUS_CODING CG3999
3R	8979770	3R_8979770_SNP [dm3] 3R_13154048_SNP [dm6]	A	G	1.951e^-4	0.871	INTRON timeout & 2 others
2L	7044668	2L_7044668_SNP [dm3] 2L_7044668_SNP [dm6]	C	G	1.958e^-4	0.871	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16674464	3L_16674464_SNP [dm3] 3L_16681364_SNP [dm6]	G	A	1.961e^-4	0.871	SYNONYMOUS_CODING Lasp UTR_5_PRIME CG43954	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16084306	2R_16084306_INS [dm3] 2R_20196801_INS [dm6]	A	AA	1.965e^-4	0.871	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25245740	3R_25245740_SNP [dm3] 3R_29420018_SNP [dm6]	G	T	1.977e^-4	0.871	INTRON Ptp99A
3R	10971237	3R_10971237_SNP [dm3] 3R_15145515_SNP [dm6]	T	C	1.984e^-4	0.871	UPSTREAM GlyS INTRON GlyS	TF binding site mE1_TFBS_cad
2L	20489210	2L_20489210_DEL [dm3] 2L_20489210_DEL [dm6]	TCGCAGACT	T	1.990e^-4	0.871	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14275502	3R_14275502_SNP [dm3] 3R_18449780_SNP [dm6]	C	T	1.998e^-4	0.871	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	15395305	2L_15395305_SNP [dm3] 2L_15395305_SNP [dm6]	A	T	2.002e^-4	0.871	INTERGENIC	TF binding site mE1_TFBS_cad
3R	11224129	3R_11224129_SNP [dm3] 3R_15398407_SNP [dm6]	G	A	2.006e^-4	0.871	INTRON Rbp
2R	11221113	2R_11221113_SNP [dm3] 2R_15333608_SNP [dm6]	T	A	2.006e^-4	0.871	SYNONYMOUS_CODING Hr51	TF binding site mE1_TFBS_chinmo
3L	7227693	3L_7227693_SNP [dm3] 3L_7234593_SNP [dm6]	G	A	2.006e^-4	0.871	UTR_5_PRIME CG14826 UPSTREAM CG14826
3L	843939	3L_843939_SNP [dm3] 3L_843939_SNP [dm6]	C	T	2.007e^-4	0.871	START_GAINED CG13889 UTR_5_PRIME CG13889 UPSTREAM CG13889 DOWNSTREAM Gr61a	TF binding site mE1_TFBS_chinmo
2R	3312823	2R_3312823_SNP [dm3] 2R_7425318_SNP [dm6]	C	T	2.011e^-4	0.871	INTRON so	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4637134	3R_4637134_SNP [dm3] 3R_8811412_SNP [dm6]	C	T	2.013e^-4	0.871	INTRON CG9837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11877292	3L_11877292_SNP [dm3] 3L_11884192_SNP [dm6]	A	T	2.020e^-4	0.871	DOWNSTREAM CCDC151 INTRON CG44837
3R	8790691	3R_8790691_SNP [dm3] 3R_12964969_SNP [dm6]	G	A	2.027e^-4	0.871	NON_SYNONYMOUS_CODING Cyp304a1 DOWNSTREAM CG14384 INTRON grsm	TF binding site mE1_TFBS_cad
X	6424905	X_6424905_INS [dm3] X_6530872_INS [dm6]	C	CAAC	2.028e^-4	0.871	DOWNSTREAM RpL7A & 2 others INTERGENIC
3L	14267329	3L_14267329_SNP [dm3] 3L_14274229_SNP [dm6]	A	T	2.033e^-4	0.871	UPSTREAM fz INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	7756243	3L_7756243_SNP [dm3] 3L_7763143_SNP [dm6]	A	C	2.035e^-4	0.871	UTR_3_PRIME Hn DOWNSTREAM Clk
3R	8245913	3R_8245913_INS [dm3] 3R_12420191_INS [dm6]	A	AAATCA	2.045e^-4	0.871	INTRON pps	TF binding site mE1_TFBS_cad
3L	7756224	3L_7756224_SNP [dm3] 3L_7763124_SNP [dm6]	A	T	2.055e^-4	0.871	UTR_3_PRIME Hn DOWNSTREAM Clk
2L	12401780	2L_12401780_SNP [dm3] 2L_12401780_SNP [dm6]	C	A	2.058e^-4	0.871	UTR_3_PRIME Pkd2
3R	25469121	3R_25469121_SNP [dm3] 3R_29643399_SNP [dm6]	G	A	2.066e^-4	0.871	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8337888	3R_8337888_SNP [dm3] 3R_12512166_SNP [dm6]	G	T	2.067e^-4	0.871	UTR_3_PRIME Octbeta3R DOWNSTREAM Hsp70Bc
X	917349	X_917349_SNP [dm3] X_1023316_SNP [dm6]	G	A	2.069e^-4	0.871	INTRON su_w[a]_ & 2 others
3R	11653311	3R_11653311_SNP [dm3] 3R_15827589_SNP [dm6]	A	G	2.070e^-4	0.871	INTRON rec & 1 other
X	11158856	X_11158856_SNP [dm3] X_11264823_SNP [dm6]	C	G	2.074e^-4	0.871	INTRON CG44422
2L	10797026	2L_10797026_SNP [dm3] 2L_10797026_SNP [dm6]	T	C	2.076e^-4	0.871	INTRON CG31869
3L	14951302	3L_14951302_SNP [dm3] 3L_14958202_SNP [dm6]	C	T	2.078e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	25738854	3R_25738854_SNP [dm3] 3R_29913132_SNP [dm6]	T	A	2.082e^-4	0.871	UTR_3_PRIME Capa DOWNSTREAM CG31036
2L	8506317	2L_8506317_SNP [dm3] 2L_8506317_SNP [dm6]	G	T	2.084e^-4	0.871	INTRON Dh31
2L	13950520	2L_13950520_SNP [dm3] 2L_13950520_SNP [dm6]	C	G	2.084e^-4	0.871	INTRON Ance-3
3L	13188650	3L_13188650_SNP [dm3] 3L_13195550_SNP [dm6]	T	A	2.087e^-4	0.871	INTERGENIC
2R	15018295	2R_15018295_SNP [dm3] 2R_19130790_SNP [dm6]	A	C	2.092e^-4	0.871	SYNONYMOUS_CODING botv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	2917695	2L_2917695_SNP [dm3] 2L_2917695_SNP [dm6]	T	C	2.095e^-4	0.871	INTRON lilli	TF binding site BDTNP1_TFBS_twi
2R	6151011	2R_6151011_SNP [dm3] 2R_10263506_SNP [dm6]	C	A	2.101e^-4	0.871	EXON CR30009	TF binding site mE1_TFBS_HSA
3L	1636065	3L_1636065_SNP [dm3] 3L_1636065_SNP [dm6]	C	T	2.105e^-4	0.871	INTRON nSyb	TF binding site mE1_TFBS_HSA
3R	21480422	3R_21480422_SNP [dm3] 3R_25654700_SNP [dm6]	G	A	2.110e^-4	0.871	SYNONYMOUS_CODING Tnks	TF binding site mE1_TFBS_chinmo
3R	6075519	3R_6075519_SNP [dm3] 3R_10249797_SNP [dm6]	T	A	2.115e^-4	0.871	SYNONYMOUS_CODING CG42795 INTRON CG42795
2L	18919544	2L_18919544_SNP [dm3] 2L_18919544_SNP [dm6]	G	T	2.116e^-4	0.871	INTRON ssp3	TF binding site mE1_TFBS_HSA
3R	8790774	3R_8790774_SNP [dm3] 3R_12965052_SNP [dm6]	C	A	2.117e^-4	0.871	SYNONYMOUS_CODING Cyp304a1 DOWNSTREAM CG14384 INTRON grsm	TF binding site mE1_TFBS_cad
3R	21059923	3R_21059923_SNP [dm3] 3R_25234201_SNP [dm6]	G	A	2.122e^-4	0.871	SYNONYMOUS_CODING CG10420
X	914964	X_914964_SNP [dm3] X_1020931_SNP [dm6]	T	C	2.123e^-4	0.871	SYNONYMOUS_CODING CG32814 INTRON su_w[a]_ & 1 other
3R	11653361	3R_11653361_SNP [dm3] 3R_15827639_SNP [dm6]	G	A	2.126e^-4	0.871	INTRON rec & 1 other
3L	11828932	3L_11828932_SNP [dm3] 3L_11835832_SNP [dm6]	G	A	2.127e^-4	0.871	SYNONYMOUS_CODING CG43064	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13915991	2R_13915991_SNP [dm3] 2R_18028486_SNP [dm6]	A	T	2.130e^-4	0.871	INTERGENIC
2L	15960006	2L_15960006_SNP [dm3] 2L_15960006_SNP [dm6]	T	C	2.135e^-4	0.871	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3L	2471002	3L_2471002_SNP [dm3] 3L_2471002_SNP [dm6]	T	A	2.143e^-4	0.871	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	8988994	3R_8988994_SNP [dm3] 3R_13163272_SNP [dm6]	G	C	2.143e^-4	0.871	NON_SYNONYMOUS_CODING timeout
3L	20943376	3L_20943376_INS [dm3] 3L_20950276_INS [dm6]	T	TTAAAATTAATTTTGTGATT...	2.144e^-4	0.871	UPSTREAM fng DOWNSTREAM CR45243 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19569801	3R_19569801_SNP [dm3] 3R_23744079_SNP [dm6]	G	A	2.151e^-4	0.871	INTRON Hmgcr
2L	3816763	2L_3816763_SNP [dm3] 2L_3816763_SNP [dm6]	A	T	2.159e^-4	0.871	UPSTREAM CR44077 DOWNSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	15511316	3L_15511316_SNP [dm3] 3L_15518216_SNP [dm6]	G	T	2.164e^-4	0.871	INTRON mex1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8506313	2L_8506313_SNP [dm3] 2L_8506313_SNP [dm6]	A	T	2.165e^-4	0.871	INTRON Dh31
2R	15018268	2R_15018268_SNP [dm3] 2R_19130763_SNP [dm6]	C	G	2.166e^-4	0.871	SYNONYMOUS_CODING botv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	12383133	2L_12383133_SNP [dm3] 2L_12383133_SNP [dm6]	G	A	2.177e^-4	0.871	INTRON bru-2
X	5815192	X_5815192_SNP [dm3] X_5921159_SNP [dm6]	T	C	2.180e^-4	0.871	INTRON CG3726
2L	9008576	2L_9008576_DEL [dm3] 2L_9008576_DEL [dm6]	AC	T	2.183e^-4	0.871	INTERGENIC
3R	10513134	3R_10513134_SNP [dm3] 3R_14687412_SNP [dm6]	G	T	2.187e^-4	0.871	INTRON Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9325078	3R_9325078_SNP [dm3] 3R_13499356_SNP [dm6]	T	C	2.188e^-4	0.871	INTERGENIC
2L	9409329	2L_9409329_SNP [dm3] 2L_9409329_SNP [dm6]	T	A	2.201e^-4	0.871	INTRON Shawl
2L	8905589	2L_8905589_SNP [dm3] 2L_8905589_SNP [dm6]	A	G	2.201e^-4	0.871	INTRON CG34398
2L	15400980	2L_15400980_SNP [dm3] 2L_15400980_SNP [dm6]	A	G	2.206e^-4	0.871	UPSTREAM CR45374 INTERGENIC
2R	10679494	2R_10679494_SNP [dm3] 2R_14791989_SNP [dm6]	A	G	2.207e^-4	0.871	INTRON kn	TF binding site BDTNP1_TFBS_twi
X	11351125	X_11351125_SNP [dm3] X_11457092_SNP [dm6]	A	G	2.210e^-4	0.871	NON_SYNONYMOUS_CODING HP5 UTR_3_PRIME HP5 DOWNSTREAM HP5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18156034	3L_18156034_SNP [dm3] 3L_18162934_SNP [dm6]	T	G	2.213e^-4	0.871	UPSTREAM CG13699 INTERGENIC
3R	14402048	3R_14402048_SNP [dm3] 3R_18576326_SNP [dm6]	T	A	2.221e^-4	0.871	INTRON CG7694 & 1 other
2L	10870041	2L_10870041_DEL [dm3] 2L_10870041_DEL [dm6]	GCT	C	2.221e^-4	0.871	UPSTREAM CG12517 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16497795	2L_16497795_SNP [dm3] 2L_16497795_SNP [dm6]	A	G	2.231e^-4	0.871	INTRON Tpr2
2L	13912888	2L_13912888_SNP [dm3] 2L_13912888_SNP [dm6]	G	A	2.248e^-4	0.871	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14641372	2R_14641372_SNP [dm3] 2R_18753867_SNP [dm6]	T	A	2.258e^-4	0.871	UTR_3_PRIME Hs3st-A
X	3876454	X_3876454_SNP [dm3] X_3982421_SNP [dm6]	G	A	2.261e^-4	0.871	INTERGENIC
3L	6569930	3L_6569930_INS [dm3] 3L_6576830_INS [dm6]	A	AATATATCTA	2.272e^-4	0.871	INTRON CG18769 & 1 other
3L	9579294	3L_9579294_SNP [dm3] 3L_9586194_SNP [dm6]	C	G	2.277e^-4	0.871	INTRON CG42673
2L	18919541	2L_18919541_SNP [dm3] 2L_18919541_SNP [dm6]	A	C	2.278e^-4	0.871	INTRON ssp3
X	6199316	X_6199316_SNP [dm3] X_6305283_SNP [dm6]	A	G	2.279e^-4	0.871	INTRON CG3823	TF binding site mE1_TFBS_HSA
3R	11634954	3R_11634954_SNP [dm3] 3R_15809232_SNP [dm6]	T	C	2.282e^-4	0.871	INTRON alpha-Man-IIb
2R	12144016	2R_12144016_SNP [dm3] 2R_16256511_SNP [dm6]	T	C	2.291e^-4	0.871	INTRON CngA
3R	26896366	3R_26896366_SNP [dm3] 3R_31070644_SNP [dm6]	C	T	2.292e^-4	0.871	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
3R	15286371	3R_15286371_SNP [dm3] 3R_19460649_SNP [dm6]	G	C	2.293e^-4	0.871	UPSTREAM Dys DOWNSTREAM CG31221 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25469242	3R_25469242_SNP [dm3] 3R_29643520_SNP [dm6]	T	A	2.296e^-4	0.871	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
3R	26615378	3R_26615378_SNP [dm3] 3R_30789656_SNP [dm6]	T	A	2.305e^-4	0.871	UTR_3_PRIME wts DOWNSTREAM zfh1
2L	1405627	2L_1405627_SNP [dm3] 2L_1405627_SNP [dm6]	A	T	2.306e^-4	0.871	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9561445	2L_9561445_SNP [dm3] 2L_9561445_SNP [dm6]	A	T	2.306e^-4	0.871	INTRON jp
2R	14125516	2R_14125516_SNP [dm3] 2R_18238011_SNP [dm6]	T	A	2.306e^-4	0.871	INTERGENIC
3L	13727694	3L_13727694_SNP [dm3] 3L_13734594_SNP [dm6]	C	G	2.310e^-4	0.871	INTRON bru-3
2L	15560151	2L_15560151_SNP [dm3] 2L_15560151_SNP [dm6]	T	C	2.319e^-4	0.871	INTRON kek3
2L	20489171	2L_20489171_SNP [dm3] 2L_20489171_SNP [dm6]	C	A	2.320e^-4	0.871	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10175375	X_10175375_SNP [dm3] X_10281342_SNP [dm6]	A	C	2.322e^-4	0.871	INTRON alpha-Man-I
2L	8893286	2L_8893286_SNP [dm3] 2L_8893286_SNP [dm6]	G	A	2.324e^-4	0.871	INTERGENIC
3R	11634825	3R_11634825_SNP [dm3] 3R_15809103_SNP [dm6]	C	G	2.327e^-4	0.871	INTRON alpha-Man-IIb
3R	9031423	3R_9031423_SNP [dm3] 3R_13205701_SNP [dm6]	G	T	2.331e^-4	0.871	INTERGENIC
3R	8791719	3R_8791719_SNP [dm3] 3R_12965997_SNP [dm6]	T	G	2.338e^-4	0.871	UTR_3_PRIME CG14384 DOWNSTREAM Cyp304a1 INTRON grsm
3R	8791724	3R_8791724_SNP [dm3] 3R_12966002_SNP [dm6]	A	G	2.338e^-4	0.871	UTR_3_PRIME CG14384 DOWNSTREAM Cyp304a1 INTRON grsm
3R	7708352	3R_7708352_SNP [dm3] 3R_11882630_SNP [dm6]	G	A	2.338e^-4	0.871	UPSTREAM CG31368 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	6349246	3L_6349246_SNP [dm3] 3L_6356146_SNP [dm6]	A	T	2.342e^-4	0.871	INTERGENIC
X	11566154	X_11566154_INS [dm3] X_11672121_INS [dm6]	A	ATGTT	2.344e^-4	0.871	INTRON Ptp10D
X	921543	X_921543_SNP [dm3] X_1027510_SNP [dm6]	C	T	2.359e^-4	0.872	SYNONYMOUS_CODING CG3021 UPSTREAM CG32814 & 1 other DOWNSTREAM CDC45L INTRON su_w[a]_	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	8113034	2R_8113034_DEL [dm3] 2R_12225529_DEL [dm6]	TGCGTAAA	T	2.362e^-4	0.872	INTRON CG8854
2R	14805250	2R_14805250_SNP [dm3] 2R_18917745_SNP [dm6]	T	A	2.369e^-4	0.872	INTRON sano
X	3876572	X_3876572_SNP [dm3] X_3982539_SNP [dm6]	G	A	2.371e^-4	0.872	INTERGENIC
2L	19456976	2L_19456976_SNP [dm3] 2L_19456976_SNP [dm6]	A	C	2.377e^-4	0.872	SYNONYMOUS_CODING CG10026
2R	13877321	2R_13877321_SNP [dm3] 2R_17989816_SNP [dm6]	G	A	2.383e^-4	0.872	SYNONYMOUS_CODING dpr13
2R	16084329	2R_16084329_SNP [dm3] 2R_20196824_SNP [dm6]	T	C	2.386e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12096376	2R_12096376_SNP [dm3] 2R_16208871_SNP [dm6]	G	A	2.388e^-4	0.872	INTRON mrj	TF binding site BDTNP1_TFBS_dl
2L	15403365	2L_15403365_SNP [dm3] 2L_15403365_SNP [dm6]	C	A	2.389e^-4	0.872	INTERGENIC
3R	24108538	3R_24108538_SNP [dm3] 3R_28282816_SNP [dm6]	G	A	2.396e^-4	0.872	UPSTREAM CG34437 INTRON CG34436
3R	13420276	3R_13420276_SNP [dm3] 3R_17594554_SNP [dm6]	T	C	2.404e^-4	0.872	SYNONYMOUS_CODING CG7587 UPSTREAM Sgs5
3L	13729228	3L_13729228_SNP [dm3] 3L_13736128_SNP [dm6]	T	C	2.411e^-4	0.872	INTRON bru-3
2R	14385988	2R_14385988_SNP [dm3] 2R_18498483_SNP [dm6]	C	A	2.417e^-4	0.872	UPSTREAM CG30116 INTERGENIC
2R	14385995	2R_14385995_SNP [dm3] 2R_18498490_SNP [dm6]	A	G	2.417e^-4	0.872	UPSTREAM CG30116 INTERGENIC
3R	1904325	3R_1904325_SNP [dm3] 3R_6078603_SNP [dm6]	C	A	2.426e^-4	0.872	UPSTREAM Or83c INTERGENIC
3L	7482035	3L_7482035_SNP [dm3] 3L_7488935_SNP [dm6]	G	A	2.426e^-4	0.872	INTERGENIC
3L	6568950	3L_6568950_SNP [dm3] 3L_6575850_SNP [dm6]	G	A	2.427e^-4	0.872	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_kn
3R	26615222	3R_26615222_SNP [dm3] 3R_30789500_SNP [dm6]	C	T	2.439e^-4	0.873	DOWNSTREAM wts & 1 other INTERGENIC
3R	3363574	3R_3363574_SNP [dm3] 3R_7537852_SNP [dm6]	C	T	2.458e^-4	0.873	NON_SYNONYMOUS_CODING alpha-Est4	TF binding site mE1_TFBS_sens
3R	26101587	3R_26101587_SNP [dm3] 3R_30275865_SNP [dm6]	T	C	2.458e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14275401	3R_14275401_SNP [dm3] 3R_18449679_SNP [dm6]	T	C	2.461e^-4	0.873	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	6090643	3R_6090643_SNP [dm3] 3R_10264921_SNP [dm6]	T	A	2.465e^-4	0.873	INTRON CG43143	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	14452468	2L_14452468_INS [dm3] 2L_14452468_INS [dm6]	C	CTC	2.471e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7227699	3L_7227699_SNP [dm3] 3L_7234599_SNP [dm6]	T	G	2.474e^-4	0.873	START_GAINED CG14826 UTR_5_PRIME CG14826 UPSTREAM CG14826
X	921495	X_921495_SNP [dm3] X_1027462_SNP [dm6]	T	A	2.478e^-4	0.873	SYNONYMOUS_CODING CG3021 UPSTREAM CG32814 & 1 other DOWNSTREAM CDC45L INTRON su_w[a]_	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	1500463	2L_1500463_SNP [dm3] 2L_1500463_SNP [dm6]	T	C	2.480e^-4	0.873	UTR_5_PRIME CG18131 UPSTREAM CR44064 & 1 other DOWNSTREAM CG7420
3L	1697267	3L_1697267_SNP [dm3] 3L_1697267_SNP [dm6]	C	A	2.481e^-4	0.873	DOWNSTREAM CG12011 INTRON CG7991
2L	5508613	2L_5508613_SNP [dm3] 2L_5508613_SNP [dm6]	T	A	2.481e^-4	0.873	INTERGENIC
3L	9313549	3L_9313549_DEL [dm3] 3L_9320449_DEL [dm6]	TTACACACACATATATACCC...	T	2.487e^-4	0.873	INTERGENIC
X	11351164	X_11351164_SNP [dm3] X_11457131_SNP [dm6]	G	A	2.489e^-4	0.873	NON_SYNONYMOUS_CODING HP5 UTR_3_PRIME HP5 DOWNSTREAM HP5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	17295129	2L_17295129_SNP [dm3] 2L_17295129_SNP [dm6]	C	A	2.499e^-4	0.874	INTERGENIC
2L	8329319	2L_8329319_SNP [dm3] 2L_8329319_SNP [dm6]	G	T	2.504e^-4	0.874	INTRON CG14275
2L	1405429	2L_1405429_SNP [dm3] 2L_1405429_SNP [dm6]	T	C	2.507e^-4	0.874	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
X	16939582	X_16939582_SNP [dm3] X_17045549_SNP [dm6]	A	C	2.515e^-4	0.874	INTRON CG45002
3R	8986217	3R_8986217_SNP [dm3] 3R_13160495_SNP [dm6]	G	T	2.517e^-4	0.874	INTRON timeout
3L	1635476	3L_1635476_SNP [dm3] 3L_1635476_SNP [dm6]	G	A	2.523e^-4	0.875	INTRON nSyb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18730822	3L_18730822_DEL [dm3] 3L_18737722_DEL [dm6]	TCAAT	T	2.561e^-4	0.884	INTERGENIC
2R	14385993	2R_14385993_SNP [dm3] 2R_18498488_SNP [dm6]	G	A	2.579e^-4	0.884	UPSTREAM CG30116 INTERGENIC
2R	3909099	2R_3909099_SNP [dm3] 2R_8021594_SNP [dm6]	A	C	2.579e^-4	0.884	EXON CR45267	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	5862907	3L_5862907_SNP [dm3] 3L_5869807_SNP [dm6]	C	T	2.582e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	18445645	3R_18445645_SNP [dm3] 3R_22619923_SNP [dm6]	T	C	2.587e^-4	0.884	DOWNSTREAM loco & 1 other INTERGENIC
3L	10535688	3L_10535688_SNP [dm3] 3L_10542588_SNP [dm6]	G	A	2.589e^-4	0.884	INTRON A2bp1
2L	15528356	2L_15528356_SNP [dm3] 2L_15528356_SNP [dm6]	A	T	2.597e^-4	0.884	INTERGENIC
3L	18563073	3L_18563073_SNP [dm3] 3L_18569973_SNP [dm6]	T	C	2.599e^-4	0.884	INTRON AstC-R1
3L	11096910	3L_11096910_SNP [dm3] 3L_11103810_SNP [dm6]	A	G	2.617e^-4	0.884	SYNONYMOUS_CODING CG32071 UPSTREAM Elo68alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16280386	3R_16280386_SNP [dm3] 3R_20454664_SNP [dm6]	A	T	2.617e^-4	0.884	INTRON Gfrl
2L	7041929	2L_7041929_SNP [dm3] 2L_7041929_SNP [dm6]	A	T	2.631e^-4	0.884	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20934714	2L_20934714_SNP [dm3] 2L_20934714_SNP [dm6]	T	G	2.635e^-4	0.884	UPSTREAM CG9270 INTERGENIC
3L	4980380	3L_4980380_SNP [dm3] 3L_4980380_SNP [dm6]	C	G	2.638e^-4	0.884	SYNONYMOUS_CODING CG17030 UPSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8997029	2L_8997029_SNP [dm3] 2L_8997029_SNP [dm6]	A	G	2.641e^-4	0.884	SYNONYMOUS_CODING alien UPSTREAM CG18661	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	4570064	X_4570064_SNP [dm3] X_4676031_SNP [dm6]	C	T	2.642e^-4	0.884	INTRON rap
3R	26609543	3R_26609543_SNP [dm3] 3R_30783821_SNP [dm6]	A	T	2.643e^-4	0.884	UPSTREAM CR45189 INTRON zfh1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11646290	2R_11646290_DEL [dm3] 2R_15758785_DEL [dm6]	GGAG	G	2.643e^-4	0.884	INTRON CG30089	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	16528000	X_16528000_SNP [dm3] X_16633967_SNP [dm6]	G	C	2.654e^-4	0.884	INTRON Rok
X	16994165	X_16994165_SNP [dm3] X_17100132_SNP [dm6]	C	G	2.654e^-4	0.884	INTRON CG4991
3R	11706245	3R_11706245_SNP [dm3] 3R_15880523_SNP [dm6]	G	T	2.662e^-4	0.884	INTERGENIC
3L	14267445	3L_14267445_SNP [dm3] 3L_14274345_SNP [dm6]	T	C	2.663e^-4	0.884	UTR_5_PRIME fz	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	7999063	2L_7999063_SNP [dm3] 2L_7999063_SNP [dm6]	G	A	2.676e^-4	0.884	UTR_5_PRIME Sirup UPSTREAM CG7227 DOWNSTREAM Wwox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	2695137	3L_2695137_SNP [dm3] 3L_2695137_SNP [dm6]	T	A	2.683e^-4	0.884	INTRON Fife
3L	4527306	3L_4527306_SNP [dm3] 3L_4527306_SNP [dm6]	C	A	2.685e^-4	0.884	INTRON Tie
2R	4944923	2R_4944923_SNP [dm3] 2R_9057418_SNP [dm6]	C	T	2.686e^-4	0.884	INTRON CG13743
2L	19218914	2L_19218914_SNP [dm3] 2L_19218914_SNP [dm6]	T	C	2.711e^-4	0.884	DOWNSTREAM CR44189 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16371345	2L_16371345_SNP [dm3] 2L_16371345_SNP [dm6]	G	A	2.718e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
X	12610202	X_12610202_SNP [dm3] X_12716169_SNP [dm6]	G	A	2.719e^-4	0.884	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12403932	2L_12403932_SNP [dm3] 2L_12403932_SNP [dm6]	A	G	2.720e^-4	0.884	SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7845106	3R_7845106_SNP [dm3] 3R_12019384_SNP [dm6]	C	G	2.720e^-4	0.884	DOWNSTREAM Spt3 INTERGENIC
2L	15528381	2L_15528381_SNP [dm3] 2L_15528381_SNP [dm6]	A	T	2.725e^-4	0.884	INTERGENIC
3L	7094690	3L_7094690_SNP [dm3] 3L_7101590_SNP [dm6]	T	C	2.726e^-4	0.884	INTRON form3
3L	9579297	3L_9579297_SNP [dm3] 3L_9586197_SNP [dm6]	A	G	2.728e^-4	0.884	INTRON CG42673
3R	24285082	3R_24285082_SNP [dm3] 3R_28459360_SNP [dm6]	T	C	2.729e^-4	0.884	INTRON beat-VI
3L	10964852	3L_10964852_SNP [dm3] 3L_10971752_SNP [dm6]	C	T	2.732e^-4	0.884	UPSTREAM CG14147 INTERGENIC
3L	14851439	3L_14851439_SNP [dm3] 3L_14858339_SNP [dm6]	A	C	2.734e^-4	0.884	INTRON CG17839
3L	10947478	3L_10947478_SNP [dm3] 3L_10954378_SNP [dm6]	C	T	2.736e^-4	0.884	INTERGENIC
3L	17410012	3L_17410012_SNP [dm3] 3L_17416912_SNP [dm6]	A	C	2.737e^-4	0.884	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14844403	3L_14844403_SNP [dm3] 3L_14851303_SNP [dm6]	T	G	2.740e^-4	0.884	INTRON CG17839
3L	7482033	3L_7482033_SNP [dm3] 3L_7488933_SNP [dm6]	A	G	2.745e^-4	0.884	INTERGENIC
3L	14155609	3L_14155609_SNP [dm3] 3L_14162509_SNP [dm6]	T	C	2.747e^-4	0.884	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13813899	2L_13813899_INS [dm3] 2L_13813899_INS [dm6]	T	TAT	2.754e^-4	0.884	UTR_5_PRIME Sos UPSTREAM CG16888 DOWNSTREAM CG16865	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10299859	3L_10299859_SNP [dm3] 3L_10306759_SNP [dm6]	C	T	2.756e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	19800911	2L_19800911_SNP [dm3] 2L_19800911_SNP [dm6]	G	A	2.765e^-4	0.884	INTRON sick	TF binding site mE1_TFBS_cad
2L	13814933	2L_13814933_SNP [dm3] 2L_13814933_SNP [dm6]	T	G	2.771e^-4	0.884	SYNONYMOUS_CODING Sos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2836781	2L_2836781_SNP [dm3] 2L_2836781_SNP [dm6]	A	T	2.771e^-4	0.884	INTRON CG3119
3R	10814664	3R_10814664_DEL [dm3] 3R_14988942_DEL [dm6]	CACGCACGC	C	2.778e^-4	0.884	INTERGENIC
3R	26609651	3R_26609651_SNP [dm3] 3R_30783929_SNP [dm6]	C	A	2.788e^-4	0.884	UPSTREAM CR45189 INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19953293	X_19953293_INS [dm3] X_20059260_INS [dm6]	A	ACAT	2.790e^-4	0.884	INTRON Dop2R
3L	843929	3L_843929_SNP [dm3] 3L_843929_SNP [dm6]	G	T	2.797e^-4	0.884	UTR_5_PRIME CG13889 UPSTREAM CG13889 DOWNSTREAM Gr61a
3R	8344140	3R_8344140_SNP [dm3] 3R_12518418_SNP [dm6]	C	T	2.798e^-4	0.884	INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	6073423	3R_6073423_SNP [dm3] 3R_10247701_SNP [dm6]	A	G	2.803e^-4	0.884	SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_inv
X	19054844	X_19054844_SNP [dm3] X_19160811_SNP [dm6]	T	A	2.809e^-4	0.884	INTRON RhoGAP18B	TF binding site mE1_TFBS_HSA
3R	6089785	3R_6089785_SNP [dm3] 3R_10264063_SNP [dm6]	T	C	2.813e^-4	0.884	UPSTREAM CG43143 DOWNSTREAM pont INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9679415	2R_9679415_SNP [dm3] 2R_13791910_SNP [dm6]	A	T	2.817e^-4	0.884	UPSTREAM CR43811 INTERGENIC
2L	15402208	2L_15402208_SNP [dm3] 2L_15402208_SNP [dm6]	G	A	2.817e^-4	0.884	INTERGENIC
3R	7116304	3R_7116304_SNP [dm3] 3R_11290582_SNP [dm6]	C	A	2.818e^-4	0.884	INTRON CR31386
3R	10280582	3R_10280582_SNP [dm3] 3R_14454860_SNP [dm6]	G	T	2.844e^-4	0.887	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	7041898	2L_7041898_SNP [dm3] 2L_7041898_SNP [dm6]	T	G	2.845e^-4	0.887	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25469128	3R_25469128_SNP [dm3] 3R_29643406_SNP [dm6]	G	T	2.856e^-4	0.887	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12459392	3R_12459392_INS [dm3] 3R_16633670_INS [dm6]	A	AA	2.859e^-4	0.887	INTRON Fas1
2L	4773118	2L_4773118_SNP [dm3] 2L_4773118_SNP [dm6]	C	T	2.863e^-4	0.887	INTRON CG15630
2R	1356244	2R_1356244_MNP [dm3] 2R_5468739_MNP [dm6]	GTCG	AGAC	2.863e^-4	0.887	INTRON CG30440
3L	8856059	3L_8856059_SNP [dm3] 3L_8862959_SNP [dm6]	G	A	2.869e^-4	0.887	INTRON dally	TF binding site BDTNP1_TFBS_prd
3R	26873273	3R_26873273_SNP [dm3] 3R_31047551_SNP [dm6]	T	A	2.888e^-4	0.887	DOWNSTREAM CanA1 INTERGENIC
X	10282117	X_10282117_INS [dm3] X_10388084_INS [dm6]	G	CA	2.890e^-4	0.887	INTRON flw	TF binding site BDTNP1_TFBS_twi
2L	15407385	2L_15407385_SNP [dm3] 2L_15407385_SNP [dm6]	G	A	2.893e^-4	0.887	INTERGENIC
X	4655363	X_4655363_SNP [dm3] X_4761330_SNP [dm6]	C	G	2.894e^-4	0.887	INTERGENIC
X	5737613	X_5737613_SNP [dm3] X_5843580_SNP [dm6]	T	A	2.896e^-4	0.887	INTERGENIC
3L	1460785	3L_1460785_SNP [dm3] 3L_1460785_SNP [dm6]	C	A	2.899e^-4	0.887	INTRON Ptp61F EXON CR44842	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7750184	2L_7750184_SNP [dm3] 2L_7750184_SNP [dm6]	G	A	2.905e^-4	0.887	INTERGENIC
2L	8681357	2L_8681357_SNP [dm3] 2L_8681357_SNP [dm6]	T	G	2.905e^-4	0.887	UTR_3_PRIME CG9289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	7864684	3L_7864684_SNP [dm3] 3L_7871584_SNP [dm6]	C	A	2.905e^-4	0.887	INTRON CG32365
2L	18404460	2L_18404460_SNP [dm3] 2L_18404460_SNP [dm6]	T	A	2.910e^-4	0.888	EXON CR44487
X	347601	X_347601_SNP [dm3] X_453568_SNP [dm6]	T	A	2.915e^-4	0.888	INTRON CG32816	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	16048449	3L_16048449_SNP [dm3] 3L_16055349_SNP [dm6]	C	T	2.924e^-4	0.889	INTRON Mbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	6424876	X_6424876_DEL [dm3] X_6530843_DEL [dm6]	AA	A	2.928e^-4	0.889	DOWNSTREAM RpL7A & 2 others INTERGENIC
X	6424873	X_6424873_MNP [dm3] X_6530840_MNP [dm6]	TTC	GAT	2.944e^-4	0.892	DOWNSTREAM RpL7A & 2 others INTERGENIC
3R	15003341	3R_15003341_SNP [dm3] 3R_19177619_SNP [dm6]	A	G	2.967e^-4	0.894	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20242137	2L_20242137_SNP [dm3] 2L_20242137_SNP [dm6]	C	A	2.971e^-4	0.894	INTERGENIC
3L	5442183	3L_5442183_SNP [dm3] 3L_5449083_SNP [dm6]	C	T	2.973e^-4	0.894	INTERGENIC
2L	15401074	2L_15401074_SNP [dm3] 2L_15401074_SNP [dm6]	T	A	2.978e^-4	0.894	UPSTREAM CR45374 INTERGENIC
3R	14787263	3R_14787263_SNP [dm3] 3R_18961541_SNP [dm6]	G	A	2.981e^-4	0.894	INTRON CG42613 & 1 other
2R	8981715	2R_8981715_DEL [dm3] 2R_13094210_DEL [dm6]	GG	A	2.983e^-4	0.894	INTERGENIC
2R	3812569	2R_3812569_SNP [dm3] 2R_7925064_SNP [dm6]	A	T	2.995e^-4	0.894	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	6569690	3L_6569690_SNP [dm3] 3L_6576590_SNP [dm6]	C	T	2.997e^-4	0.894	INTRON CG18769 & 1 other
2L	10431342	2L_10431342_SNP [dm3] 2L_10431342_SNP [dm6]	G	A	3.003e^-4	0.894	UTR_5_PRIME TfIIB UPSTREAM CG5343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14950275	3L_14950275_SNP [dm3] 3L_14957175_SNP [dm6]	A	T	3.014e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18273084	3L_18273084_SNP [dm3] 3L_18279984_SNP [dm6]	A	G	3.024e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_Ubx
3R	13871179	3R_13871179_SNP [dm3] 3R_18045457_SNP [dm6]	A	G	3.031e^-4	0.894	UTR_3_PRIME htl
2R	12482319	2R_12482319_SNP [dm3] 2R_16594814_SNP [dm6]	C	T	3.039e^-4	0.894	UPSTREAM CG8306 DOWNSTREAM CG8303 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	17888303	2L_17888303_SNP [dm3] 2L_17888303_SNP [dm6]	G	T	3.041e^-4	0.894	INTERGENIC
X	8796944	X_8796944_SNP [dm3] X_8902911_SNP [dm6]	T	A	3.045e^-4	0.894	INTRON Rbm13
3L	7482019	3L_7482019_SNP [dm3] 3L_7488919_SNP [dm6]	T	A	3.047e^-4	0.894	INTERGENIC
2L	5511302	2L_5511302_SNP [dm3] 2L_5511302_SNP [dm6]	T	A	3.048e^-4	0.894	INTERGENIC
2R	11612173	2R_11612173_SNP [dm3] 2R_15724668_SNP [dm6]	C	A	3.053e^-4	0.894	INTERGENIC
2L	3217460	2L_3217460_SNP [dm3] 2L_3217460_SNP [dm6]	G	C	3.054e^-4	0.894	INTERGENIC
3L	8677680	3L_8677680_SNP [dm3] 3L_8684580_SNP [dm6]	A	G	3.055e^-4	0.894	INTERGENIC
3R	25395622	3R_25395622_SNP [dm3] 3R_29569900_SNP [dm6]	G	A	3.057e^-4	0.894	INTERGENIC
3R	15041244	3R_15041244_SNP [dm3] 3R_19215522_SNP [dm6]	C	T	3.059e^-4	0.894	UTR_3_PRIME vib DOWNSTREAM cry
2L	6186996	2L_6186996_INS [dm3] 2L_6186996_INS [dm6]	T	TT	3.064e^-4	0.894	INTRON CG34380	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1405625	2L_1405625_SNP [dm3] 2L_1405625_SNP [dm6]	G	A	3.074e^-4	0.894	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7183274	3L_7183274_SNP [dm3] 3L_7190174_SNP [dm6]	T	C	3.079e^-4	0.894	UPSTREAM Dscam2 INTERGENIC
2L	9564341	2L_9564341_SNP [dm3] 2L_9564341_SNP [dm6]	G	C	3.080e^-4	0.894	INTRON jp
X	3270458	X_3270458_DEL [dm3] X_3376425_DEL [dm6]	AA	A	3.081e^-4	0.894	INTRON dm & 1 other
2L	7042113	2L_7042113_SNP [dm3] 2L_7042113_SNP [dm6]	A	T	3.092e^-4	0.894	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18919540	2L_18919540_SNP [dm3] 2L_18919540_SNP [dm6]	A	T	3.098e^-4	0.894	INTRON ssp3
2R	6303623	2R_6303623_SNP [dm3] 2R_10416118_SNP [dm6]	A	G	3.108e^-4	0.894	INTRON CG42732
3R	8496750	3R_8496750_SNP [dm3] 3R_12671028_SNP [dm6]	A	G	3.117e^-4	0.894	SYNONYMOUS_CODING CG14395	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10560842	3L_10560842_SNP [dm3] 3L_10567742_SNP [dm6]	T	A	3.120e^-4	0.894	INTRON A2bp1
3L	13725805	3L_13725805_SNP [dm3] 3L_13732705_SNP [dm6]	C	T	3.126e^-4	0.894	INTRON bru-3
X	11272541	X_11272541_SNP [dm3] X_11378508_SNP [dm6]	C	T	3.128e^-4	0.894	INTRON dlg1
3R	8857146	3R_8857146_SNP [dm3] 3R_13031424_SNP [dm6]	G	A	3.131e^-4	0.894	NON_SYNONYMOUS_CODING l_3_87Df UPSTREAM CG12360	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	17888319	2L_17888319_SNP [dm3] 2L_17888319_SNP [dm6]	A	T	3.136e^-4	0.894	INTERGENIC
3L	18796047	3L_18796047_SNP [dm3] 3L_18802947_SNP [dm6]	T	G	3.142e^-4	0.894	SYNONYMOUS_CODING CG14073
3R	6073887	3R_6073887_SNP [dm3] 3R_10248165_SNP [dm6]	T	A	3.142e^-4	0.894	NON_SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15528225	2L_15528225_SNP [dm3] 2L_15528225_SNP [dm6]	T	C	3.144e^-4	0.894	INTERGENIC
X	8201781	X_8201781_SNP [dm3] X_8307748_SNP [dm6]	G	A	3.145e^-4	0.894	INTRON nAChRalpha3
3R	8979771	3R_8979771_SNP [dm3] 3R_13154049_SNP [dm6]	G	T	3.146e^-4	0.894	INTRON timeout & 2 others
2R	11220114	2R_11220114_SNP [dm3] 2R_15332609_SNP [dm6]	G	A	3.153e^-4	0.895	INTRON Hr51
3L	14267428	3L_14267428_SNP [dm3] 3L_14274328_SNP [dm6]	C	A	3.163e^-4	0.895	UPSTREAM fz INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	18746700	3R_18746700_SNP [dm3] 3R_22920978_SNP [dm6]	G	A	3.165e^-4	0.895	INTRON klg
3R	18445689	3R_18445689_SNP [dm3] 3R_22619967_SNP [dm6]	C	T	3.170e^-4	0.895	DOWNSTREAM loco & 1 other INTERGENIC
3L	1640285	3L_1640285_SNP [dm3] 3L_1640285_SNP [dm6]	C	T	3.179e^-4	0.897	SYNONYMOUS_CODING Bgb DOWNSTREAM alphaCOP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26873270	3R_26873270_SNP [dm3] 3R_31047548_SNP [dm6]	G	T	3.186e^-4	0.897	DOWNSTREAM CanA1 INTERGENIC
3L	1555236	3L_1555236_SNP [dm3] 3L_1555236_SNP [dm6]	G	A	3.199e^-4	0.897	UTR_3_PRIME Cct2 DOWNSTREAM CG12099	TF binding site mE1_TFBS_cad
X	2607676	X_2607676_SNP [dm3] X_2713643_SNP [dm6]	A	G	3.202e^-4	0.897	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15975948	2L_15975948_SNP [dm3] 2L_15975948_SNP [dm6]	C	A	3.203e^-4	0.897	INTERGENIC
3R	10194614	3R_10194614_SNP [dm3] 3R_14368892_SNP [dm6]	T	A	3.209e^-4	0.897	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25032744	3R_25032744_SNP [dm3] 3R_29207022_SNP [dm6]	A	T	3.211e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6410296	2L_6410296_SNP [dm3] 2L_6410296_SNP [dm6]	T	G	3.222e^-4	0.898	INTRON CG42368
3R	8789014	3R_8789014_SNP [dm3] 3R_12963292_SNP [dm6]	T	C	3.225e^-4	0.898	UPSTREAM Cyp304a1 DOWNSTREAM Spc25 INTRON grsm
2L	13665284	2L_13665284_SNP [dm3] 2L_13665284_SNP [dm6]	C	T	3.229e^-4	0.898	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15400979	2L_15400979_SNP [dm3] 2L_15400979_SNP [dm6]	G	T	3.230e^-4	0.898	UPSTREAM CR45374 INTERGENIC
2L	14495973	2L_14495973_SNP [dm3] 2L_14495973_SNP [dm6]	A	C	3.240e^-4	0.898	DOWNSTREAM tRNA:P:35Bd INTERGENIC
X	19054932	X_19054932_SNP [dm3] X_19160899_SNP [dm6]	C	T	3.243e^-4	0.898	INTRON RhoGAP18B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9956306	3L_9956306_SNP [dm3] 3L_9963206_SNP [dm6]	C	A	3.250e^-4	0.899	INTRON CG34356
2R	6093128	2R_6093128_SNP [dm3] 2R_10205623_SNP [dm6]	G	T	3.282e^-4	0.906	UTR_3_PRIME Hr46 & 1 other
2L	16379723	2L_16379723_SNP [dm3] 2L_16379723_SNP [dm6]	G	C	3.289e^-4	0.906	INTERGENIC
3L	11002847	3L_11002847_SNP [dm3] 3L_11009747_SNP [dm6]	T	C	3.300e^-4	0.906	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	19054709	X_19054709_SNP [dm3] X_19160676_SNP [dm6]	A	T	3.307e^-4	0.906	INTRON RhoGAP18B	TF binding site mE1_TFBS_HSA
2L	20489175	2L_20489175_SNP [dm3] 2L_20489175_SNP [dm6]	T	G	3.308e^-4	0.906	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15888167	2L_15888167_SNP [dm3] 2L_15888167_SNP [dm6]	C	G	3.309e^-4	0.906	DOWNSTREAM Tep1 EXON CR31824
2R	13040181	2R_13040181_SNP [dm3] 2R_17152676_SNP [dm6]	A	T	3.323e^-4	0.906	INTERGENIC
2L	7042092	2L_7042092_INS [dm3] 2L_7042092_INS [dm6]	A	ACACTTTGTTTTGTAGTGTC...	3.328e^-4	0.906	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8790954	3R_8790954_SNP [dm3] 3R_12965232_SNP [dm6]	A	G	3.329e^-4	0.906	SYNONYMOUS_CODING Cyp304a1 DOWNSTREAM CG14384 INTRON grsm	TF binding site mE1_TFBS_cad
3R	25395323	3R_25395323_SNP [dm3] 3R_29569601_SNP [dm6]	C	T	3.330e^-4	0.906	INTERGENIC
3R	22914532	3R_22914532_SNP [dm3] 3R_27088810_SNP [dm6]	T	C	3.338e^-4	0.906	DOWNSTREAM Cpr97Eb INTERGENIC
2R	15018247	2R_15018247_SNP [dm3] 2R_19130742_SNP [dm6]	T	C	3.340e^-4	0.906	SYNONYMOUS_CODING botv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	7733789	3R_7733789_SNP [dm3] 3R_11908067_SNP [dm6]	G	A	3.343e^-4	0.906	INTRON Cad87A
3L	11828920	3L_11828920_SNP [dm3] 3L_11835820_SNP [dm6]	T	A	3.358e^-4	0.906	NON_SYNONYMOUS_CODING CG43064	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20561263	2L_20561263_SNP [dm3] 2L_20561263_SNP [dm6]	C	T	3.361e^-4	0.906	UPSTREAM CR45347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21024934	3R_21024934_SNP [dm3] 3R_25199212_SNP [dm6]	A	G	3.361e^-4	0.906	UPSTREAM CG13654 INTRON Cad96Ca
2L	7060783	2L_7060783_SNP [dm3] 2L_7060783_SNP [dm6]	A	C	3.361e^-4	0.906	INTRON Mnn1 & 1 other
3L	20740713	3L_20740713_SNP [dm3] 3L_20747613_SNP [dm6]	G	T	3.373e^-4	0.906	INTERGENIC
X	913899	X_913899_SNP [dm3] X_1019866_SNP [dm6]	C	A	3.376e^-4	0.906	UTR_3_PRIME CG32814 INTRON su_w[a]_ & 1 other
2R	14374799	2R_14374799_SNP [dm3] 2R_18487294_SNP [dm6]	T	G	3.384e^-4	0.906	INTRON CG30116
3L	5124281	3L_5124281_SNP [dm3] 3L_5131181_SNP [dm6]	C	G	3.390e^-4	0.906	UPSTREAM CG15212 DOWNSTREAM CG4597 INTERGENIC
3R	8979756	3R_8979756_SNP [dm3] 3R_13154034_SNP [dm6]	C	T	3.394e^-4	0.906	INTRON timeout & 2 others
3L	6109815	3L_6109815_SNP [dm3] 3L_6116715_SNP [dm6]	G	T	3.395e^-4	0.906	INTRON Ets65A	TF binding site mE1_TFBS_Kr
2L	2836273	2L_2836273_SNP [dm3] 2L_2836273_SNP [dm6]	G	T	3.398e^-4	0.906	INTRON CG3119
2R	12096370	2R_12096370_DEL [dm3] 2R_16208865_DEL [dm6]	GG	G	3.402e^-4	0.906	INTRON mrj	TF binding site BDTNP1_TFBS_dl
3R	13414109	3R_13414109_SNP [dm3] 3R_17588387_SNP [dm6]	G	C	3.409e^-4	0.906	INTERGENIC
3R	9028964	3R_9028964_SNP [dm3] 3R_13203242_SNP [dm6]	A	T	3.413e^-4	0.906	INTERGENIC
2L	12378597	2L_12378597_SNP [dm3] 2L_12378597_SNP [dm6]	A	G	3.416e^-4	0.906	INTRON bru-2
2L	16248095	2L_16248095_INS [dm3] 2L_16248095_INS [dm6]	A	ATTA	3.419e^-4	0.906	INTRON PRL-1
3L	7127885	3L_7127885_SNP [dm3] 3L_7134785_SNP [dm6]	G	A	3.419e^-4	0.906	UTR_5_PRIME melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7171157	3L_7171157_SNP [dm3] 3L_7178057_SNP [dm6]	C	T	3.428e^-4	0.907	INTRON Dscam2
2L	7500869	2L_7500869_SNP [dm3] 2L_7500869_SNP [dm6]	T	A	3.440e^-4	0.909	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13690687	3R_13690687_SNP [dm3] 3R_17864965_SNP [dm6]	G	A	3.451e^-4	0.91	SYNONYMOUS_CODING tinc
3L	11655805	3L_11655805_SNP [dm3] 3L_11662705_SNP [dm6]	G	A	3.456e^-4	0.91	INTRON CG32085
2L	19455828	2L_19455828_SNP [dm3] 2L_19455828_SNP [dm6]	T	C	3.465e^-4	0.911	UTR_5_PRIME CG10026 INTRON CG10026
3L	13728165	3L_13728165_SNP [dm3] 3L_13735065_SNP [dm6]	C	T	3.473e^-4	0.912	INTRON bru-3
2R	2732234	2R_2732234_DEL [dm3] 2R_6844729_DEL [dm6]	CC	C	3.489e^-4	0.914	INTERGENIC
X	5739057	X_5739057_DEL [dm3] X_5845024_DEL [dm6]	TGGACAT	T	3.491e^-4	0.914	UPSTREAM CG12729 INTERGENIC
2L	8905594	2L_8905594_INS [dm3] 2L_8905594_INS [dm6]	C	TG	3.493e^-4	0.914	INTRON CG34398
2L	8700154	2L_8700154_SNP [dm3] 2L_8700154_SNP [dm6]	C	G	3.503e^-4	0.914	UPSTREAM Hnf4 INTRON Hnf4
3L	4244389	3L_4244389_SNP [dm3] 3L_4244389_SNP [dm6]	C	T	3.504e^-4	0.914	SYNONYMOUS_CODING pav	TF binding site mE1_TFBS_sens
2L	6405206	2L_6405206_SNP [dm3] 2L_6405206_SNP [dm6]	G	C	3.521e^-4	0.914	INTRON CG42368
2L	15509307	2L_15509307_SNP [dm3] 2L_15509307_SNP [dm6]	A	C	3.522e^-4	0.914	INTERGENIC
2L	19118354	2L_19118354_SNP [dm3] 2L_19118354_SNP [dm6]	T	A	3.537e^-4	0.914	INTRON Ddc	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17685078	2L_17685078_DEL [dm3] 2L_17685078_DEL [dm6]	TAGTTTAAATTTATTT...	T	3.548e^-4	0.914	INTRON CadN
3L	2464159	3L_2464159_SNP [dm3] 3L_2464159_SNP [dm6]	C	T	3.556e^-4	0.914	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad
2R	13914243	2R_13914243_DEL [dm3] 2R_18026738_DEL [dm6]	GG	G	3.557e^-4	0.914	INTERGENIC
2L	10428967	2L_10428967_SNP [dm3] 2L_10428967_SNP [dm6]	C	T	3.558e^-4	0.914	DOWNSTREAM KdelR & 1 other INTRON CG5188	TF binding site BDTNP1_TFBS_dl
X	5894000	X_5894000_INS [dm3] X_5999967_INS [dm6]	T	TTAGATACT	3.559e^-4	0.914	INTRON CG4766	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	9889542	2R_9889542_SNP [dm3] 2R_14002037_SNP [dm6]	T	C	3.566e^-4	0.914	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	7594524	2R_7594524_SNP [dm3] 2R_11707019_SNP [dm6]	G	A	3.566e^-4	0.914	UPSTREAM CR45377 INTERGENIC
X	13210675	X_13210675_SNP [dm3] X_13316642_SNP [dm6]	G	A	3.570e^-4	0.914	INTRON IP3K2
3L	21159821	3L_21159821_DEL [dm3] 3L_21166721_DEL [dm6]	AG	A	3.574e^-4	0.914	INTRON Ac78C
2R	14428853	2R_14428853_SNP [dm3] 2R_18541348_SNP [dm6]	A	G	3.584e^-4	0.914	INTRON Rgk2
2L	18919528	2L_18919528_SNP [dm3] 2L_18919528_SNP [dm6]	G	A	3.587e^-4	0.914	INTRON ssp3
X	15097100	X_15097100_SNP [dm3] X_15203067_SNP [dm6]	C	T	3.588e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13842350	2L_13842350_DEL [dm3] 2L_13842350_DEL [dm6]	CAAAT	C	3.591e^-4	0.914	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	9290114	2L_9290114_INS [dm3] 2L_9290114_INS [dm6]	A	AA	3.592e^-4	0.914	INTRON Ggamma30A
2L	15403375	2L_15403375_SNP [dm3] 2L_15403375_SNP [dm6]	A	G	3.601e^-4	0.914	INTERGENIC
3L	14961171	3L_14961171_SNP [dm3] 3L_14968071_SNP [dm6]	A	T	3.602e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5785880	2L_5785880_INS [dm3] 2L_5785880_INS [dm6]	G	GTAGAGG	3.603e^-4	0.914	DOWNSTREAM CG31913 INTRON CG9171	TF binding site BDTNP1_TFBS_twi
X	927192	X_927192_DEL [dm3] X_1033159_DEL [dm6]	GTGTCTCAACTTG...	G	3.604e^-4	0.914	UTR_3_PRIME CG14630 UPSTREAM su_w[a]_ DOWNSTREAM CG14630 INTRON su_w[a]_ INTRAGENIC CG14630	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2R	6292101	2R_6292101_SNP [dm3] 2R_10404596_SNP [dm6]	G	A	3.614e^-4	0.914	INTRON CG42732
2R	6496995	2R_6496995_SNP [dm3] 2R_10609490_SNP [dm6]	G	C	3.617e^-4	0.914	INTRON psq
3R	8738490	3R_8738490_SNP [dm3] 3R_12912768_SNP [dm6]	G	A	3.621e^-4	0.914	INTERGENIC
3R	25012605	3R_25012605_SNP [dm3] 3R_29186883_SNP [dm6]	T	C	3.631e^-4	0.915	INTRON CG14509
3L	14851438	3L_14851438_SNP [dm3] 3L_14858338_SNP [dm6]	A	G	3.633e^-4	0.915	INTRON CG17839
2L	5108573	2L_5108573_SNP [dm3] 2L_5108573_SNP [dm6]	C	T	3.643e^-4	0.916	UTR_5_PRIME Msp300 UPSTREAM Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1714447	3L_1714447_SNP [dm3] 3L_1714447_SNP [dm6]	G	A	3.651e^-4	0.916	SYNONYMOUS_CODING CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14181528	2L_14181528_SNP [dm3] 2L_14181528_SNP [dm6]	A	C	3.657e^-4	0.916	UPSTREAM CG43333 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	12663554	2R_12663554_SNP [dm3] 2R_16776049_SNP [dm6]	C	T	3.660e^-4	0.916	DOWNSTREAM Arp53D INTERGENIC
3R	8790807	3R_8790807_SNP [dm3] 3R_12965085_SNP [dm6]	A	G	3.661e^-4	0.916	SYNONYMOUS_CODING Cyp304a1 DOWNSTREAM CG14384 INTRON grsm	TF binding site mE1_TFBS_cad
2R	501548	2R_501548_SNP [dm3] 2R_4614043_SNP [dm6]	C	G	3.667e^-4	0.916	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8976194	2L_8976194_SNP [dm3] 2L_8976194_SNP [dm6]	T	C	3.674e^-4	0.916	UPSTREAM CG9541 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11840608	X_11840608_SNP [dm3] X_11946575_SNP [dm6]	A	C	3.689e^-4	0.919	INTRON cac
2R	14645040	2R_14645040_SNP [dm3] 2R_18757535_SNP [dm6]	T	A	3.695e^-4	0.919	DOWNSTREAM Jabba & 1 other INTRON Jabba
2R	6369187	2R_6369187_SNP [dm3] 2R_10481682_SNP [dm6]	A	T	3.698e^-4	0.919	UTR_3_PRIME CG17765 DOWNSTREAM lola & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3L	10737829	3L_10737829_SNP [dm3] 3L_10744729_SNP [dm6]	A	G	3.712e^-4	0.92	INTERGENIC
3L	10039621	3L_10039621_SNP [dm3] 3L_10046521_SNP [dm6]	C	T	3.714e^-4	0.92	INTRON dpr6
2L	3217383	2L_3217383_SNP [dm3] 2L_3217383_SNP [dm6]	A	T	3.725e^-4	0.92	INTERGENIC
2L	13665126	2L_13665126_DEL [dm3] 2L_13665126_DEL [dm6]	GCTGGGGAAATG...	G	3.728e^-4	0.92	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2898876	3L_2898876_SNP [dm3] 3L_2898876_SNP [dm6]	T	C	3.730e^-4	0.92	INTRON Shab
X	14339517	X_14339517_INS [dm3] X_14445484_INS [dm6]	C	CGTTCTGGCCC...	3.732e^-4	0.92	INTRON dpr8
X	913801	X_913801_SNP [dm3] X_1019768_SNP [dm6]	A	C	3.745e^-4	0.922	DOWNSTREAM CG32814 INTRON su_w[a]_ & 1 other
X	13044242	X_13044242_SNP [dm3] X_13150209_SNP [dm6]	A	T	3.754e^-4	0.922	INTRON CG32645
2R	19373299	2R_19373299_SNP [dm3] 2R_23485776_SNP [dm6]	T	A	3.755e^-4	0.922	INTRON CG43795
3L	1466378	3L_1466378_SNP [dm3] 3L_1466378_SNP [dm6]	C	T	3.763e^-4	0.922	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_cad
3L	18808546	3L_18808546_SNP [dm3] 3L_18815446_SNP [dm6]	C	T	3.773e^-4	0.922	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8746341	3L_8746341_SNP [dm3] 3L_8753241_SNP [dm6]	T	A	3.780e^-4	0.922	UPSTREAM Fhos INTERGENIC
3L	12327350	3L_12327350_SNP [dm3] 3L_12334250_SNP [dm6]	G	A	3.785e^-4	0.922	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo
3R	9941769	3R_9941769_SNP [dm3] 3R_14116047_SNP [dm6]	C	A	3.787e^-4	0.922	INTRON Kif19A	TF binding site mE1_TFBS_inv
3R	2249075	3R_2249075_SNP [dm3] 3R_6423353_SNP [dm6]	A	C	3.788e^-4	0.922	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_Trl
3L	6568847	3L_6568847_SNP [dm3] 3L_6575747_SNP [dm6]	G	A	3.790e^-4	0.922	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_kn
X	347667	X_347667_SNP [dm3] X_453634_SNP [dm6]	T	G	3.808e^-4	0.922	INTRON CG32816	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17620828	X_17620828_SNP [dm3] X_17726795_SNP [dm6]	A	G	3.814e^-4	0.922	INTRON CG42684
3R	6075839	3R_6075839_SNP [dm3] 3R_10250117_SNP [dm6]	G	A	3.815e^-4	0.922	UTR_3_PRIME CG42795 INTRON CG42795
3R	25268104	3R_25268104_SNP [dm3] 3R_29442382_SNP [dm6]	A	G	3.822e^-4	0.922	INTRON Ptp99A
2R	12229819	2R_12229819_SNP [dm3] 2R_16342314_SNP [dm6]	T	C	3.826e^-4	0.922	SYNONYMOUS_CODING CG7997
2R	12229846	2R_12229846_SNP [dm3] 2R_16342341_SNP [dm6]	C	A	3.826e^-4	0.922	SYNONYMOUS_CODING CG7997
2R	10066569	2R_10066569_SNP [dm3] 2R_14179064_SNP [dm6]	A	G	3.830e^-4	0.922	INTRON cg	TF binding site mE1_TFBS_HSA
3R	26910750	3R_26910750_SNP [dm3] 3R_31085028_SNP [dm6]	T	G	3.831e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	12796551	2R_12796551_SNP [dm3] 2R_16909046_SNP [dm6]	C	T	3.837e^-4	0.923	INTERGENIC
3R	17000446	3R_17000446_SNP [dm3] 3R_21174724_SNP [dm6]	T	C	3.842e^-4	0.923	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13242217	3L_13242217_SNP [dm3] 3L_13249117_SNP [dm6]	T	C	3.853e^-4	0.923	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
3L	1643318	3L_1643318_SNP [dm3] 3L_1643318_SNP [dm6]	G	A	3.854e^-4	0.923	SYNONYMOUS_CODING alphaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10913663	3L_10913663_SNP [dm3] 3L_10920563_SNP [dm6]	C	T	3.860e^-4	0.923	INTERGENIC
3L	5461884	3L_5461884_SNP [dm3] 3L_5468784_SNP [dm6]	A	C	3.870e^-4	0.923	INTERGENIC
3R	4951140	3R_4951140_SNP [dm3] 3R_9125418_SNP [dm6]	T	G	3.874e^-4	0.923	INTRON pum
3R	5915331	3R_5915331_SNP [dm3] 3R_10089609_SNP [dm6]	G	A	3.877e^-4	0.923	EXON CR45054	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7020999	2R_7020999_SNP [dm3] 2R_11133494_SNP [dm6]	C	T	3.878e^-4	0.923	INTERGENIC
3R	8738141	3R_8738141_SNP [dm3] 3R_12912419_SNP [dm6]	C	A	3.883e^-4	0.923	INTERGENIC
3R	12474447	3R_12474447_SNP [dm3] 3R_16648725_SNP [dm6]	G	T	3.886e^-4	0.923	SYNONYMOUS_CODING Cctgamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14004547	2L_14004547_SNP [dm3] 2L_14004547_SNP [dm6]	T	A	3.902e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14978948	2R_14978948_SNP [dm3] 2R_19091443_SNP [dm6]	C	T	3.922e^-4	0.925	SYNONYMOUS_CODING 5-HT1A
X	913802	X_913802_SNP [dm3] X_1019769_SNP [dm6]	A	C	3.924e^-4	0.925	DOWNSTREAM CG32814 INTRON su_w[a]_ & 1 other
3R	8327874	3R_8327874_SNP [dm3] 3R_12502152_SNP [dm6]	C	T	3.935e^-4	0.925	UPSTREAM Hsp70Bbb INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_Trl
X	7209608	X_7209608_SNP [dm3] X_7315575_SNP [dm6]	T	A	3.943e^-4	0.925	INTRON CR44357 & 2 others
3R	22237128	3R_22237128_SNP [dm3] 3R_26411406_SNP [dm6]	C	A	3.952e^-4	0.925	INTERGENIC
3R	8133545	3R_8133545_SNP [dm3] 3R_12307823_SNP [dm6]	C	G	3.952e^-4	0.925	INTERGENIC
3L	13716694	3L_13716694_SNP [dm3] 3L_13723594_SNP [dm6]	T	C	3.954e^-4	0.925	INTRON bru-3
2L	20474441	2L_20474441_SNP [dm3] 2L_20474441_SNP [dm6]	G	C	3.970e^-4	0.925	INTRON CR44980
X	9179925	X_9179925_SNP [dm3] X_9285892_SNP [dm6]	A	C	3.971e^-4	0.925	UTR_5_PRIME lz
X	5330854	X_5330854_SNP [dm3] X_5436821_SNP [dm6]	C	T	3.975e^-4	0.925	INTERGENIC
3R	14042584	3R_14042584_SNP [dm3] 3R_18216862_SNP [dm6]	T	C	3.983e^-4	0.925	SYNONYMOUS_CODING CG14314	TF binding site mE1_TFBS_cad
3R	25268109	3R_25268109_SNP [dm3] 3R_29442387_SNP [dm6]	G	A	3.984e^-4	0.925	INTRON Ptp99A
3R	25469259	3R_25469259_SNP [dm3] 3R_29643537_SNP [dm6]	T	C	3.994e^-4	0.925	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
2L	1047449	2L_1047449_SNP [dm3] 2L_1047449_SNP [dm6]	A	T	3.994e^-4	0.925	INTRON IA-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13726342	3L_13726342_SNP [dm3] 3L_13733242_SNP [dm6]	G	A	3.996e^-4	0.925	INTRON bru-3
3L	13354972	3L_13354972_SNP [dm3] 3L_13361872_SNP [dm6]	G	A	3.996e^-4	0.925	INTERGENIC
2R	8092915	2R_8092915_SNP [dm3] 2R_12205410_SNP [dm6]	C	G	4.000e^-4	0.925	UPSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12586507	2L_12586507_SNP [dm3] 2L_12586507_SNP [dm6]	G	A	4.000e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	8790315	3R_8790315_SNP [dm3] 3R_12964593_SNP [dm6]	T	C	4.013e^-4	0.925	SYNONYMOUS_CODING Cyp304a1 INTRON grsm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9364889	2L_9364889_SNP [dm3] 2L_9364889_SNP [dm6]	C	A	4.018e^-4	0.925	EXON CR43404
X	15517187	X_15517187_SNP [dm3] X_15623154_SNP [dm6]	A	G	4.019e^-4	0.925	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26676081	3R_26676081_SNP [dm3] 3R_30850359_SNP [dm6]	T	A	4.028e^-4	0.925	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	18973682	3L_18973682_SNP [dm3] 3L_18980582_SNP [dm6]	T	G	4.029e^-4	0.925	DOWNSTREAM CR45689 INTERGENIC
X	3898720	X_3898720_SNP [dm3] X_4004687_SNP [dm6]	C	T	4.029e^-4	0.925	INTERGENIC
3L	12185544	3L_12185544_SNP [dm3] 3L_12192444_SNP [dm6]	A	G	4.029e^-4	0.925	UTR_3_PRIME Est-P DOWNSTREAM thoc6 INTRON thoc6
3R	10430472	3R_10430472_SNP [dm3] 3R_14604750_SNP [dm6]	T	C	4.038e^-4	0.925	SYNONYMOUS_CODING stumps	TF binding site mE1_TFBS_cad
3L	1097354	3L_1097354_SNP [dm3] 3L_1097354_SNP [dm6]	A	G	4.039e^-4	0.925	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	15472697	X_15472697_SNP [dm3] X_15578664_SNP [dm6]	G	A	4.052e^-4	0.925	SYNONYMOUS_CODING CG7872 UPSTREAM cerv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10261359	2R_10261359_SNP [dm3] 2R_14373854_SNP [dm6]	C	T	4.057e^-4	0.925	SYNONYMOUS_CODING CG34185 DOWNSTREAM Obp50b & 3 others
2L	8958740	2L_8958740_SNP [dm3] 2L_8958740_SNP [dm6]	G	A	4.061e^-4	0.925	UPSTREAM CG31886 DOWNSTREAM CG9525 INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8928607	3L_8928607_SNP [dm3] 3L_8935507_SNP [dm6]	T	G	4.062e^-4	0.925	SYNONYMOUS_CODING CG43783
X	21894925	X_21894925_DEL [dm3] X_22493089_DEL [dm6]	TATA	T	4.065e^-4	0.925	INTRON l_1_G0196
2R	9968967	2R_9968967_SNP [dm3] 2R_14081462_SNP [dm6]	G	A	4.069e^-4	0.925	INTRON Prosap
3L	9909234	3L_9909234_SNP [dm3] 3L_9916134_SNP [dm6]	T	G	4.077e^-4	0.925	INTRON CG34356	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	16371334	2L_16371334_SNP [dm3] 2L_16371334_SNP [dm6]	C	T	4.077e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	634348	3L_634348_SNP [dm3] 3L_634348_SNP [dm6]	C	A	4.083e^-4	0.925	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13854767	3R_13854767_SNP [dm3] 3R_18029045_SNP [dm6]	C	T	4.084e^-4	0.925	INTERGENIC
3R	8797253	3R_8797253_SNP [dm3] 3R_12971531_SNP [dm6]	G	T	4.092e^-4	0.925	INTRON CG7381
3R	21986296	3R_21986296_SNP [dm3] 3R_26160574_SNP [dm6]	C	T	4.097e^-4	0.925	INTERGENIC
2R	9139303	2R_9139303_DEL [dm3] 2R_13251798_DEL [dm6]	CT	C	4.101e^-4	0.925	UPSTREAM CG4712 DOWNSTREAM CG4714 INTERGENIC	TF binding site mE1_TFBS_cad
3L	14957580	3L_14957580_SNP [dm3] 3L_14964480_SNP [dm6]	G	A	4.104e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23487303	3R_23487303_SNP [dm3] 3R_27661581_SNP [dm6]	C	T	4.115e^-4	0.925	UPSTREAM unc80 INTERGENIC
3L	12773639	3L_12773639_SNP [dm3] 3L_12780539_SNP [dm6]	C	T	4.135e^-4	0.925	SYNONYMOUS_CODING CG10969 UPSTREAM CG17666
2L	7046224	2L_7046224_SNP [dm3] 2L_7046224_SNP [dm6]	T	C	4.137e^-4	0.925	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8344092	3R_8344092_SNP [dm3] 3R_12518370_SNP [dm6]	T	A	4.139e^-4	0.925	INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	2466591	3L_2466591_SNP [dm3] 3L_2466591_SNP [dm6]	C	G	4.139e^-4	0.925	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	21675754	3R_21675754_SNP [dm3] 3R_25850032_SNP [dm6]	A	C	4.143e^-4	0.925	DOWNSTREAM CG14545 INTERGENIC
3L	7868577	3L_7868577_SNP [dm3] 3L_7875477_SNP [dm6]	T	G	4.160e^-4	0.925	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	8704613	2L_8704613_SNP [dm3] 2L_8704613_SNP [dm6]	C	A	4.168e^-4	0.925	UPSTREAM CG9314 INTRON Hnf4 EXON CR44992
3L	7868511	3L_7868511_SNP [dm3] 3L_7875411_SNP [dm6]	A	G	4.170e^-4	0.925	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	8891623	2L_8891623_SNP [dm3] 2L_8891623_SNP [dm6]	A	G	4.177e^-4	0.925	INTRON CG42713
2R	12796549	2R_12796549_SNP [dm3] 2R_16909044_SNP [dm6]	G	T	4.177e^-4	0.925	INTERGENIC
2R	8978651	2R_8978651_DEL [dm3] 2R_13091146_DEL [dm6]	CACG	C	4.188e^-4	0.925	INTERGENIC
3R	9370004	3R_9370004_SNP [dm3] 3R_13544282_SNP [dm6]	G	A	4.189e^-4	0.925	UTR_3_PRIME CG31337
3R	9370014	3R_9370014_SNP [dm3] 3R_13544292_SNP [dm6]	A	T	4.189e^-4	0.925	UTR_3_PRIME CG31337
3R	14037324	3R_14037324_DEL [dm3] 3R_18211602_DEL [dm6]	TG	A	4.189e^-4	0.925	INTRON CG7985
2L	11857541	2L_11857541_SNP [dm3] 2L_11857541_SNP [dm6]	G	A	4.191e^-4	0.925	INTRON Pde1c
3L	17183043	3L_17183043_SNP [dm3] 3L_17189943_SNP [dm6]	A	T	4.197e^-4	0.925	INTRON Rbp6
3R	10182513	3R_10182513_SNP [dm3] 3R_14356791_SNP [dm6]	A	T	4.198e^-4	0.925	INTRON NK7.1
2R	5176729	2R_5176729_SNP [dm3] 2R_9289224_SNP [dm6]	T	C	4.198e^-4	0.925	SYNONYMOUS_CODING Mad1 DOWNSTREAM CG1968
2L	13427026	2L_13427026_SNP [dm3] 2L_13427026_SNP [dm6]	T	A	4.211e^-4	0.925	INTRON CG42784
3R	14203307	3R_14203307_SNP [dm3] 3R_18377585_SNP [dm6]	G	C	4.212e^-4	0.925	DOWNSTREAM CG7675 INTERGENIC
3L	1437840	3L_1437840_INS [dm3] 3L_1437840_INS [dm6]	A	AA	4.219e^-4	0.925	UTR_5_PRIME SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	1421297	3R_1421297_SNP [dm3] 3R_5595575_SNP [dm6]	T	G	4.230e^-4	0.925	UTR_3_PRIME kra DOWNSTREAM Vha26 & 4 others	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
3R	26675970	3R_26675970_SNP [dm3] 3R_30850248_SNP [dm6]	C	T	4.235e^-4	0.925	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	26446494	3R_26446494_SNP [dm3] 3R_30620772_SNP [dm6]	A	T	4.240e^-4	0.925	INTRON CG44954
3R	14755422	3R_14755422_SNP [dm3] 3R_18929700_SNP [dm6]	T	C	4.253e^-4	0.925	INTRON CG42613	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1465854	3L_1465854_SNP [dm3] 3L_1465854_SNP [dm6]	A	T	4.259e^-4	0.925	INTRON Ptp61F & 1 other
X	14702164	X_14702164_SNP [dm3] X_14808131_SNP [dm6]	T	C	4.261e^-4	0.925	INTRON rut
2L	18404418	2L_18404418_SNP [dm3] 2L_18404418_SNP [dm6]	G	A	4.263e^-4	0.925	EXON CR44487
2R	8087999	2R_8087999_SNP [dm3] 2R_12200494_SNP [dm6]	G	A	4.265e^-4	0.925	SYNONYMOUS_CODING RpS11 UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	15946795	2L_15946795_DEL [dm3] 2L_15946795_DEL [dm6]	GACTTTGAGTGG...	G	4.280e^-4	0.925	INTRON beat-Ib
X	11351116	X_11351116_SNP [dm3] X_11457083_SNP [dm6]	A	G	4.293e^-4	0.925	NON_SYNONYMOUS_CODING HP5 UTR_3_PRIME HP5 DOWNSTREAM HP5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	16034699	3L_16034699_SNP [dm3] 3L_16041599_SNP [dm6]	T	C	4.303e^-4	0.925	INTRON th	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11309804	2R_11309804_SNP [dm3] 2R_15422299_SNP [dm6]	G	A	4.315e^-4	0.925	DOWNSTREAM CG30472 INTRON CG43729	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2927155	3L_2927155_INS [dm3] 3L_2927155_INS [dm6]	A	AAATAAATA	4.320e^-4	0.925	INTRON Shab
3R	5637646	3R_5637646_SNP [dm3] 3R_9811924_SNP [dm6]	G	A	4.327e^-4	0.925	UPSTREAM CG8534 INTRON CR44035	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	13716339	3L_13716339_INS [dm3] 3L_13723239_INS [dm6]	T	TCTGCGCCT	4.334e^-4	0.925	INTRON bru-3
3R	13913040	3R_13913040_SNP [dm3] 3R_18087318_SNP [dm6]	T	G	4.335e^-4	0.925	INTERGENIC
3L	12224470	3L_12224470_INS [dm3] 3L_12231370_INS [dm6]	A	ACCAAGAAACAATTT...	4.338e^-4	0.925	INTRON app
2L	16240929	2L_16240929_SNP [dm3] 2L_16240929_SNP [dm6]	A	T	4.340e^-4	0.925	UTR_3_PRIME CG42817 DOWNSTREAM CG42817
2L	11414297	2L_11414297_SNP [dm3] 2L_11414297_SNP [dm6]	C	T	4.342e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	10526632	3R_10526632_SNP [dm3] 3R_14700910_SNP [dm6]	G	A	4.342e^-4	0.925	INTRON kibra	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25399024	3R_25399024_SNP [dm3] 3R_29573302_SNP [dm6]	A	T	4.346e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2469747	3L_2469747_SNP [dm3] 3L_2469747_SNP [dm6]	A	G	4.356e^-4	0.925	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1047383	2L_1047383_INS [dm3] 2L_1047383_INS [dm6]	G	GTTGATATTG	4.364e^-4	0.925	INTRON IA-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6701073	3R_6701073_SNP [dm3] 3R_10875351_SNP [dm6]	A	T	4.369e^-4	0.925	UTR_3_PRIME CG4596
2L	7042153	2L_7042153_SNP [dm3] 2L_7042153_SNP [dm6]	A	G	4.371e^-4	0.925	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13580292	3L_13580292_SNP [dm3] 3L_13587192_SNP [dm6]	A	C	4.373e^-4	0.925	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3L	7244851	3L_7244851_SNP [dm3] 3L_7251751_SNP [dm6]	A	G	4.379e^-4	0.925	SYNONYMOUS_CODING CG14830 EXON CR43470	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	14275392	3R_14275392_SNP [dm3] 3R_18449670_SNP [dm6]	A	C	4.379e^-4	0.925	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9226164	3L_9226164_SNP [dm3] 3L_9233064_SNP [dm6]	C	T	4.380e^-4	0.925	INTERGENIC
3R	8405880	3R_8405880_SNP [dm3] 3R_12580158_SNP [dm6]	T	G	4.384e^-4	0.925	INTRON Octbeta2R
2R	11795229	2R_11795229_SNP [dm3] 2R_15907724_SNP [dm6]	A	T	4.387e^-4	0.925	INTRON sli
3L	13726447	3L_13726447_SNP [dm3] 3L_13733347_SNP [dm6]	A	C	4.389e^-4	0.925	INTRON bru-3
2L	21941383	2L_21941383_SNP [dm3] 2L_21941383_SNP [dm6]	T	A	4.400e^-4	0.925	INTERGENIC
3R	23589966	3R_23589966_SNP [dm3] 3R_27764244_SNP [dm6]	G	T	4.412e^-4	0.925	INTERGENIC
2R	14645042	2R_14645042_SNP [dm3] 2R_18757537_SNP [dm6]	A	T	4.415e^-4	0.925	DOWNSTREAM Jabba & 1 other INTRON Jabba
3R	8738484	3R_8738484_SNP [dm3] 3R_12912762_SNP [dm6]	G	A	4.416e^-4	0.925	INTERGENIC
3L	7868546	3L_7868546_SNP [dm3] 3L_7875446_SNP [dm6]	G	T	4.418e^-4	0.925	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	8976174	2L_8976174_DEL [dm3] 2L_8976174_DEL [dm6]	TTT	T	4.418e^-4	0.925	UPSTREAM CG9541 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14467008	3L_14467008_SNP [dm3] 3L_14473908_SNP [dm6]	G	A	4.424e^-4	0.925	INTRON bbg
3R	18139109	3R_18139109_SNP [dm3] 3R_22313387_SNP [dm6]	C	G	4.427e^-4	0.925	INTRON CG34377
2L	12403784	2L_12403784_SNP [dm3] 2L_12403784_SNP [dm6]	A	T	4.431e^-4	0.925	NON_SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA
3L	13716665	3L_13716665_SNP [dm3] 3L_13723565_SNP [dm6]	G	C	4.432e^-4	0.925	INTRON bru-3
3R	8288284	3R_8288284_SNP [dm3] 3R_12462562_SNP [dm6]	A	T	4.436e^-4	0.925	UTR_3_PRIME CG5608 DOWNSTREAM CG12267
3R	26609603	3R_26609603_SNP [dm3] 3R_30783881_SNP [dm6]	T	G	4.437e^-4	0.925	UPSTREAM CR45189 INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12347621	3R_12347621_SNP [dm3] 3R_16521899_SNP [dm6]	C	T	4.440e^-4	0.925	INTRON CG42342
2R	14641706	2R_14641706_SNP [dm3] 2R_18754201_SNP [dm6]	A	T	4.443e^-4	0.925	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2
2R	14647343	2R_14647343_SNP [dm3] 2R_18759838_SNP [dm6]	A	T	4.455e^-4	0.925	INTRON Jabba
X	13216229	X_13216229_SNP [dm3] X_13322196_SNP [dm6]	A	C	4.464e^-4	0.925	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21026251	3R_21026251_SNP [dm3] 3R_25200529_SNP [dm6]	C	A	4.471e^-4	0.925	INTRON Cad96Ca & 1 other
2R	14585464	2R_14585464_SNP [dm3] 2R_18697959_SNP [dm6]	A	G	4.472e^-4	0.925	DOWNSTREAM CG15071 INTRON Sik3
2L	18657843	2L_18657843_SNP [dm3] 2L_18657843_SNP [dm6]	G	T	4.478e^-4	0.925	INTRON MESR3
3L	11388971	3L_11388971_INS [dm3] 3L_11395871_INS [dm6]	A	AT	4.479e^-4	0.925	DOWNSTREAM CG11726 INTERGENIC
3L	18231717	3L_18231717_DEL [dm3] 3L_18238617_DEL [dm6]	AA	A	4.507e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	11297658	3L_11297658_SNP [dm3] 3L_11304558_SNP [dm6]	C	A	4.514e^-4	0.925	INTERGENIC
2R	17128928	2R_17128928_SNP [dm3] 2R_21241423_SNP [dm6]	G	A	4.515e^-4	0.925	INTRON ASPP
3R	9025187	3R_9025187_DEL [dm3] 3R_13199465_DEL [dm6]	CACTCCC	C	4.524e^-4	0.925	INTERGENIC
3L	5870984	3L_5870984_SNP [dm3] 3L_5877884_SNP [dm6]	C	T	4.529e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14054077	3R_14054077_SNP [dm3] 3R_18228355_SNP [dm6]	C	T	4.537e^-4	0.925	SYNONYMOUS_CODING Mdh2
2L	9289484	2L_9289484_SNP [dm3] 2L_9289484_SNP [dm6]	A	G	4.538e^-4	0.925	INTRON Ggamma30A
3L	18730840	3L_18730840_SNP [dm3] 3L_18737740_SNP [dm6]	A	G	4.540e^-4	0.925	INTERGENIC
2L	2940137	2L_2940137_SNP [dm3] 2L_2940137_SNP [dm6]	T	C	4.543e^-4	0.925	INTRON lilli
3L	2311747	3L_2311747_SNP [dm3] 3L_2311747_SNP [dm6]	G	A	4.545e^-4	0.925	INTERGENIC
3R	9034291	3R_9034291_SNP [dm3] 3R_13208569_SNP [dm6]	C	T	4.554e^-4	0.925	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	3876568	X_3876568_SNP [dm3] X_3982535_SNP [dm6]	A	T	4.576e^-4	0.925	INTERGENIC
2R	13764949	2R_13764949_SNP [dm3] 2R_17877444_SNP [dm6]	G	T	4.581e^-4	0.925	DOWNSTREAM CG30325 INTRON Elk
2L	8681312	2L_8681312_SNP [dm3] 2L_8681312_SNP [dm6]	T	G	4.581e^-4	0.925	DOWNSTREAM CG9289 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	10227637	3R_10227637_SNP [dm3] 3R_14401915_SNP [dm6]	A	T	4.591e^-4	0.925	INTRON cv-c
2L	16089652	2L_16089652_SNP [dm3] 2L_16089652_SNP [dm6]	C	A	4.607e^-4	0.925	INTERGENIC
X	920540	X_920540_SNP [dm3] X_1026507_SNP [dm6]	G	A	4.608e^-4	0.925	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13725718	3L_13725718_SNP [dm3] 3L_13732618_SNP [dm6]	A	T	4.618e^-4	0.925	INTRON bru-3
3R	7659032	3R_7659032_SNP [dm3] 3R_11833310_SNP [dm6]	T	G	4.621e^-4	0.925	INTRON CG6959	TF binding site mE1_TFBS_cad
3R	13456912	3R_13456912_SNP [dm3] 3R_17631190_SNP [dm6]	T	A	4.626e^-4	0.925	UPSTREAM tRNA:CR31573 & 1 other INTRON CG43175	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	13456918	3R_13456918_SNP [dm3] 3R_17631196_SNP [dm6]	G	A	4.626e^-4	0.925	UPSTREAM tRNA:CR31573 & 1 other INTRON CG43175	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	2468938	3L_2468938_SNP [dm3] 3L_2468938_SNP [dm6]	T	C	4.626e^-4	0.925	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11411561	2L_11411561_SNP [dm3] 2L_11411561_SNP [dm6]	C	T	4.627e^-4	0.925	INTERGENIC	regulatory region REDfly_CRMs
3R	16442688	3R_16442688_SNP [dm3] 3R_20616966_SNP [dm6]	G	T	4.633e^-4	0.925	UPSTREAM CG5466 & 1 other INTERGENIC
3R	10227309	3R_10227309_SNP [dm3] 3R_14401587_SNP [dm6]	A	T	4.634e^-4	0.925	INTRON cv-c
3L	10062789	3L_10062789_SNP [dm3] 3L_10069689_SNP [dm6]	T	C	4.634e^-4	0.925	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8746349	3L_8746349_SNP [dm3] 3L_8753249_SNP [dm6]	C	A	4.650e^-4	0.925	UPSTREAM Fhos INTERGENIC
2R	9138987	2R_9138987_DEL [dm3] 2R_13251482_DEL [dm6]	GCTTCGT	G	4.655e^-4	0.925	DOWNSTREAM CG4714
3L	13727541	3L_13727541_SNP [dm3] 3L_13734441_SNP [dm6]	A	G	4.660e^-4	0.925	INTRON bru-3
2L	15528203	2L_15528203_INS [dm3] 2L_15528203_INS [dm6]	A	AGAAAAAAAGAAAAGAAAA...	4.663e^-4	0.925	INTERGENIC
2L	15959973	2L_15959973_SNP [dm3] 2L_15959973_SNP [dm6]	G	A	4.665e^-4	0.925	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3R	9799948	3R_9799948_SNP [dm3] 3R_13974226_SNP [dm6]	T	C	4.668e^-4	0.925	INTRON rdx EXON CR43460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3R	21535964	3R_21535964_SNP [dm3] 3R_25710242_SNP [dm6]	G	A	4.676e^-4	0.925	INTRON LpR2
2L	18896876	2L_18896876_SNP [dm3] 2L_18896876_SNP [dm6]	C	A	4.677e^-4	0.925	DOWNSTREAM CR44737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	12959243	3L_12959243_SNP [dm3] 3L_12966143_SNP [dm6]	T	A	4.704e^-4	0.925	UPSTREAM Or69a INTRON Or69a
3R	5120944	3R_5120944_SNP [dm3] 3R_9295222_SNP [dm6]	T	G	4.705e^-4	0.925	UTR_3_PRIME CG8861
2R	12547878	2R_12547878_SNP [dm3] 2R_16660373_SNP [dm6]	G	A	4.705e^-4	0.925	INTRON Picot
3R	26608321	3R_26608321_SNP [dm3] 3R_30782599_SNP [dm6]	A	T	4.708e^-4	0.925	UPSTREAM zfh1 INTRON zfh1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10584367	3R_10584367_SNP [dm3] 3R_14758645_SNP [dm6]	T	C	4.709e^-4	0.925	INTRON jvl
3L	13716866	3L_13716866_SNP [dm3] 3L_13723766_SNP [dm6]	T	C	4.709e^-4	0.925	INTRON bru-3
2L	8976164	2L_8976164_SNP [dm3] 2L_8976164_SNP [dm6]	T	A	4.714e^-4	0.925	UPSTREAM CG9541 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12796609	2R_12796609_SNP [dm3] 2R_16909104_SNP [dm6]	T	C	4.717e^-4	0.925	INTERGENIC
2L	13427008	2L_13427008_SNP [dm3] 2L_13427008_SNP [dm6]	G	T	4.742e^-4	0.925	INTRON CG42784
3L	1636049	3L_1636049_SNP [dm3] 3L_1636049_SNP [dm6]	A	G	4.745e^-4	0.925	INTRON nSyb	TF binding site mE1_TFBS_HSA
3L	18123144	3L_18123144_SNP [dm3] 3L_18130044_SNP [dm6]	G	T	4.754e^-4	0.925	UTR_3_PRIME Cyp312a1 DOWNSTREAM Cyp312a1
2L	20489142	2L_20489142_SNP [dm3] 2L_20489142_SNP [dm6]	T	C	4.755e^-4	0.925	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20473245	2L_20473245_SNP [dm3] 2L_20473245_SNP [dm6]	A	C	4.762e^-4	0.925	INTRON CR44980 & 1 other
X	13440548	X_13440548_SNP [dm3] X_13546515_SNP [dm6]	G	A	4.763e^-4	0.925	INTERGENIC
2R	15523354	2R_15523354_DEL [dm3] 2R_19635849_DEL [dm6]	AA	A	4.768e^-4	0.925	UTR_3_PRIME CG42753 UPSTREAM CG18367
3R	5973303	3R_5973303_SNP [dm3] 3R_10147581_SNP [dm6]	T	C	4.768e^-4	0.925	INTRON Invadolysin
3R	9374702	3R_9374702_SNP [dm3] 3R_13548980_SNP [dm6]	C	G	4.772e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13755436	2L_13755436_SNP [dm3] 2L_13755436_SNP [dm6]	A	C	4.777e^-4	0.925	INTRON CR44846 & 1 other
2R	8978655	2R_8978655_INS [dm3] 2R_13091150_INS [dm6]	C	CACTTGGACTCC...	4.780e^-4	0.925	INTERGENIC
2L	16497741	2L_16497741_SNP [dm3] 2L_16497741_SNP [dm6]	A	T	4.781e^-4	0.925	INTRON Tpr2
3L	7864503	3L_7864503_SNP [dm3] 3L_7871403_SNP [dm6]	C	G	4.782e^-4	0.925	INTRON CG32365
2R	14273384	2R_14273384_SNP [dm3] 2R_18385879_SNP [dm6]	C	T	4.785e^-4	0.925	UPSTREAM CG15067 & 1 other DOWNSTREAM CG18107 INTERGENIC
3L	1437784	3L_1437784_SNP [dm3] 3L_1437784_SNP [dm6]	A	T	4.794e^-4	0.925	UTR_5_PRIME SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12985535	3L_12985535_SNP [dm3] 3L_12992435_SNP [dm6]	G	A	4.804e^-4	0.925	INTERGENIC
2R	9804328	2R_9804328_SNP [dm3] 2R_13916823_SNP [dm6]	G	A	4.811e^-4	0.925	INTRON shot
3L	14851381	3L_14851381_SNP [dm3] 3L_14858281_SNP [dm6]	G	C	4.813e^-4	0.925	INTRON CG17839
2R	14386362	2R_14386362_SNP [dm3] 2R_18498857_SNP [dm6]	T	C	4.815e^-4	0.925	UPSTREAM CG30116 INTERGENIC
2R	6292989	2R_6292989_SNP [dm3] 2R_10405484_SNP [dm6]	C	T	4.820e^-4	0.925	INTRON CG42732
3R	9167221	3R_9167221_SNP [dm3] 3R_13341499_SNP [dm6]	G	C	4.829e^-4	0.925	INTRON PK2-R1
3L	18832985	3L_18832985_SNP [dm3] 3L_18839885_SNP [dm6]	T	G	4.838e^-4	0.925	INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	7708845	3R_7708845_SNP [dm3] 3R_11883123_SNP [dm6]	T	A	4.839e^-4	0.925	SYNONYMOUS_CODING CG31368 UPSTREAM CG6962 DOWNSTREAM mthl5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	14086154	2L_14086154_SNP [dm3] 2L_14086154_SNP [dm6]	A	C	4.840e^-4	0.925	INTRON nAChRalpha5
2R	12822916	2R_12822916_SNP [dm3] 2R_16935411_SNP [dm6]	G	A	4.841e^-4	0.925	INTRON Pkc53E
3L	13729600	3L_13729600_SNP [dm3] 3L_13736500_SNP [dm6]	A	G	4.847e^-4	0.925	INTRON bru-3	TF binding site mE1_TFBS_ftz_f1
3R	9970357	3R_9970357_SNP [dm3] 3R_14144635_SNP [dm6]	T	G	4.848e^-4	0.925	INTERGENIC
3L	10862368	3L_10862368_SNP [dm3] 3L_10869268_SNP [dm6]	T	C	4.855e^-4	0.925	UPSTREAM tna INTRON tna
3R	13415359	3R_13415359_SNP [dm3] 3R_17589637_SNP [dm6]	G	A	4.856e^-4	0.925	INTERGENIC
2L	18919121	2L_18919121_SNP [dm3] 2L_18919121_SNP [dm6]	G	A	4.863e^-4	0.925	INTRON ssp3
2L	9289490	2L_9289490_SNP [dm3] 2L_9289490_SNP [dm6]	C	T	4.866e^-4	0.925	INTRON Ggamma30A
2R	9139297	2R_9139297_INS [dm3] 2R_13251792_INS [dm6]	G	GAGTACAACAGTACAAAGG...	4.873e^-4	0.925	UPSTREAM CG4712 DOWNSTREAM CG4714 INTERGENIC	TF binding site mE1_TFBS_cad
3R	15195248	3R_15195248_SNP [dm3] 3R_19369526_SNP [dm6]	A	G	4.876e^-4	0.925	INTRON Ino80
3R	7765178	3R_7765178_SNP [dm3] 3R_11939456_SNP [dm6]	T	A	4.888e^-4	0.925	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi
3R	6075507	3R_6075507_SNP [dm3] 3R_10249785_SNP [dm6]	T	A	4.893e^-4	0.925	SYNONYMOUS_CODING CG42795 INTRON CG42795
2R	7735424	2R_7735424_SNP [dm3] 2R_11847919_SNP [dm6]	A	G	4.903e^-4	0.925	INTRON Sln
2L	7001121	2L_7001121_SNP [dm3] 2L_7001121_SNP [dm6]	A	G	4.903e^-4	0.925	INTRON uif
3R	19776315	3R_19776315_SNP [dm3] 3R_23950593_SNP [dm6]	A	G	4.920e^-4	0.925	INTERGENIC
X	13210651	X_13210651_SNP [dm3] X_13316618_SNP [dm6]	G	C	4.923e^-4	0.925	INTRON IP3K2
X	21894930	X_21894930_INS [dm3] X_22493094_INS [dm6]	T	TTTTGTCATCTGTTTACTTA...	4.927e^-4	0.925	INTRON l_1_G0196
3R	2306313	3R_2306313_SNP [dm3] 3R_6480591_SNP [dm6]	G	T	4.929e^-4	0.925	INTRON CG15186
3R	8912786	3R_8912786_SNP [dm3] 3R_13087064_SNP [dm6]	C	T	4.935e^-4	0.925	DOWNSTREAM CG43063 INTERGENIC
3R	13456876	3R_13456876_DEL [dm3] 3R_17631154_DEL [dm6]	CCTCT	AAC	4.939e^-4	0.925	UPSTREAM tRNA:CR31573 & 1 other INTRON CG43175	TF binding site mE1_TFBS_Kr
3R	13456885	3R_13456885_SNP [dm3] 3R_17631163_SNP [dm6]	C	G	4.939e^-4	0.925	UPSTREAM tRNA:CR31573 & 1 other INTRON CG43175	TF binding site mE1_TFBS_Kr
3R	19590383	3R_19590383_SNP [dm3] 3R_23764661_SNP [dm6]	C	T	4.939e^-4	0.925	SYNONYMOUS_CODING Lsd-1
2L	1130153	2L_1130153_SNP [dm3] 2L_1130153_SNP [dm6]	T	C	4.943e^-4	0.925	SYNONYMOUS_CODING CG4552	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5862930	3L_5862930_DEL [dm3] 3L_5869830_DEL [dm6]	AT	A	4.953e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	6099938	3R_6099938_SNP [dm3] 3R_10274216_SNP [dm6]	T	C	4.957e^-4	0.925	INTRON CG43143
3R	25732414	3R_25732414_SNP [dm3] 3R_29906692_SNP [dm6]	C	A	4.961e^-4	0.925	DOWNSTREAM CG15515 INTERGENIC
3R	9370002	3R_9370002_SNP [dm3] 3R_13544280_SNP [dm6]	T	A	4.967e^-4	0.925	UTR_3_PRIME CG31337
3R	21055457	3R_21055457_SNP [dm3] 3R_25229735_SNP [dm6]	G	C	4.970e^-4	0.925	INTRON Cad96Cb
2L	16427777	2L_16427777_SNP [dm3] 2L_16427777_SNP [dm6]	A	G	4.973e^-4	0.925	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.410e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	4.625e-07

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.9827	0.0828

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1805 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	1.068e^-7	0.2	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	23439912	3L_23439912_SNP [dm3] 3L_23446812_SNP [dm6]	T	A	5.971e^-7	0.494	INTERGENIC
2R	1081533	2R_1081533_DEL [dm3] 2R_5194028_DEL [dm6]	GT	G	7.901e^-7	0.494	INTRON Nipped-A	transposable element FlyBase
2L	13726505	2L_13726505_SNP [dm3] 2L_13726505_SNP [dm6]	G	T	1.574e^-6	0.542	INTERGENIC
2L	13726506	2L_13726506_SNP [dm3] 2L_13726506_SNP [dm6]	G	T	1.617e^-6	0.542	INTERGENIC
2L	5964672	2L_5964672_SNP [dm3] 2L_5964672_SNP [dm6]	G	A	1.733e^-6	0.542	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd
3R	12799800	3R_12799800_SNP [dm3] 3R_16974078_SNP [dm6]	G	T	2.216e^-6	0.594	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	2.959e^-6	0.668	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	5964676	2L_5964676_SNP [dm3] 2L_5964676_SNP [dm6]	A	G	3.628e^-6	0.668	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd
2L	10345596	2L_10345596_SNP [dm3] 2L_10345596_SNP [dm6]	T	C	4.039e^-6	0.668	INTRON CG5022
3R	12799780	3R_12799780_SNP [dm3] 3R_16974058_SNP [dm6]	T	C	5.275e^-6	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	12799894	3R_12799894_SNP [dm3] 3R_16974172_SNP [dm6]	T	A	5.547e^-6	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	15907840	3R_15907840_SNP [dm3] 3R_20082118_SNP [dm6]	G	A	5.707e^-6	0.668	SYNONYMOUS_CODING Rh3	TF binding site mE1_TFBS_cad
3R	12799763	3R_12799763_INS [dm3] 3R_16974041_INS [dm6]	C	TCTTAAACTATGAGTG...	5.713e^-6	0.668	INTERGENIC
3R	12799805	3R_12799805_SNP [dm3] 3R_16974083_SNP [dm6]	T	C	5.982e^-6	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	313440	2L_313440_SNP [dm3] 2L_313440_SNP [dm6]	A	G	6.085e^-6	0.668	INTRON Plc21C
2L	10530516	2L_10530516_SNP [dm3] 2L_10530516_SNP [dm6]	T	C	6.578e^-6	0.668	SYNONYMOUS_CODING Lip4
3L	5460183	3L_5460183_SNP [dm3] 3L_5467083_SNP [dm6]	G	A	6.649e^-6	0.668	INTERGENIC
2R	1081532	2R_1081532_SNP [dm3] 2R_5194027_SNP [dm6]	T	A	6.766e^-6	0.668	INTRON Nipped-A	transposable element FlyBase
X	10933155	X_10933155_SNP [dm3] X_11039122_SNP [dm6]	G	C	8.321e^-6	0.734	INTRON CG42339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	14846282	X_14846282_DEL [dm3] X_14952249_DEL [dm6]	ATATGTA	A	8.648e^-6	0.734	UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	2457129	3R_2457129_SNP [dm3] 3R_6631407_SNP [dm6]	A	C	8.653e^-6	0.734	DOWNSTREAM sunz INTERGENIC
3R	19261728	3R_19261728_SNP [dm3] 3R_23436006_SNP [dm6]	G	A	9.351e^-6	0.734	INTRON CG4374
2L	4422778	2L_4422778_SNP [dm3] 2L_4422778_SNP [dm6]	A	G	9.536e^-6	0.734	INTRON CG15431
3R	19261520	3R_19261520_SNP [dm3] 3R_23435798_SNP [dm6]	A	T	9.781e^-6	0.734	INTRON CG4374
3R	14140329	3R_14140329_SNP [dm3] 3R_18314607_SNP [dm6]	G	C	1.020e^-5	0.736	UPSTREAM PKD INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8512026	2L_8512026_SNP [dm3] 2L_8512026_SNP [dm6]	G	A	1.192e^-5	0.754	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	12799714	3R_12799714_SNP [dm3] 3R_16973992_SNP [dm6]	A	T	1.209e^-5	0.754	INTERGENIC
2L	4813253	2L_4813253_SNP [dm3] 2L_4813253_SNP [dm6]	A	C	1.248e^-5	0.754	UTR_5_PRIME CG15629
3R	2457128	3R_2457128_SNP [dm3] 3R_6631406_SNP [dm6]	C	G	1.254e^-5	0.754	DOWNSTREAM sunz INTERGENIC
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	1.262e^-5	0.754	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
3R	23884709	3R_23884709_SNP [dm3] 3R_28058987_SNP [dm6]	G	A	1.332e^-5	0.754	INTRON CG34362
2R	14571614	2R_14571614_SNP [dm3] 2R_18684109_SNP [dm6]	A	G	1.372e^-5	0.754	UTR_5_PRIME CG44435 & 1 other DOWNSTREAM CG44433
2L	9125501	2L_9125501_SNP [dm3] 2L_9125501_SNP [dm6]	T	C	1.411e^-5	0.754	UPSTREAM CG32982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Kr
3R	23886018	3R_23886018_SNP [dm3] 3R_28060296_SNP [dm6]	C	T	1.443e^-5	0.754	INTRON CG34362
3R	23886156	3R_23886156_INS [dm3] 3R_28060434_INS [dm6]	T	TAT	1.450e^-5	0.754	INTRON CG34362
2L	13722023	2L_13722023_SNP [dm3] 2L_13722023_SNP [dm6]	T	C	1.488e^-5	0.754	DOWNSTREAM CG9014 INTERGENIC
2R	12253096	2R_12253096_SNP [dm3] 2R_16365591_SNP [dm6]	T	A	1.559e^-5	0.766	UTR_5_PRIME CG15711	TF binding site BDTNP1_TFBS_twi
2R	16439653	2R_16439653_SNP [dm3] 2R_20552148_SNP [dm6]	C	G	1.592e^-5	0.766	UPSTREAM CG13430 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18689778	3L_18689778_SNP [dm3] 3L_18696678_SNP [dm6]	C	T	1.642e^-5	0.77	UTR_3_PRIME Dic4 DOWNSTREAM Dic4
3R	15909618	3R_15909618_SNP [dm3] 3R_20083896_SNP [dm6]	T	C	1.688e^-5	0.772	INTERGENIC
3R	23884594	3R_23884594_SNP [dm3] 3R_28058872_SNP [dm6]	G	A	1.775e^-5	0.775	INTRON CG34362
3L	9137472	3L_9137472_SNP [dm3] 3L_9144372_SNP [dm6]	A	G	1.809e^-5	0.775	UTR_3_PRIME nwk UPSTREAM mir-4940 INTRON nwk	TF binding site mE1_TFBS_cad
2L	4639880	2L_4639880_SNP [dm3] 2L_4639880_SNP [dm6]	G	T	1.817e^-5	0.775	INTERGENIC
3R	12799734	3R_12799734_SNP [dm3] 3R_16974012_SNP [dm6]	A	T	1.882e^-5	0.785	INTERGENIC
3R	12799715	3R_12799715_SNP [dm3] 3R_16973993_SNP [dm6]	C	G	1.989e^-5	0.804	INTERGENIC
2L	20134738	2L_20134738_SNP [dm3] 2L_20134738_SNP [dm6]	A	G	2.057e^-5	0.804	INTRON CG10651
2L	1531313	2L_1531313_SNP [dm3] 2L_1531313_SNP [dm6]	G	A	2.132e^-5	0.804	INTERGENIC
3L	14524363	3L_14524363_SNP [dm3] 3L_14531263_SNP [dm6]	T	A	2.183e^-5	0.804	INTRON bbg
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	2.241e^-5	0.804	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9512213	2R_9512213_SNP [dm3] 2R_13624708_SNP [dm6]	T	G	2.255e^-5	0.804	INTRON fas
2L	8504960	2L_8504960_SNP [dm3] 2L_8504960_SNP [dm6]	G	A	2.267e^-5	0.804	INTRON Dh31
2L	1531597	2L_1531597_SNP [dm3] 2L_1531597_SNP [dm6]	G	C	2.287e^-5	0.804	INTERGENIC
2L	313403	2L_313403_SNP [dm3] 2L_313403_SNP [dm6]	A	T	2.367e^-5	0.804	INTRON Plc21C
2L	10345624	2L_10345624_SNP [dm3] 2L_10345624_SNP [dm6]	G	T	2.462e^-5	0.804	INTRON CG5022
X	16051095	X_16051095_SNP [dm3] X_16157062_SNP [dm6]	C	G	2.481e^-5	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15957612	3L_15957612_SNP [dm3] 3L_15964512_SNP [dm6]	G	T	2.485e^-5	0.804	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13722385	2L_13722385_SNP [dm3] 2L_13722385_SNP [dm6]	T	G	2.515e^-5	0.804	UTR_3_PRIME CG9014
3R	11392803	3R_11392803_SNP [dm3] 3R_15567081_SNP [dm6]	G	C	2.528e^-5	0.804	INTERGENIC
2R	17111583	2R_17111583_SNP [dm3] 2R_21224078_SNP [dm6]	A	G	2.707e^-5	0.842	UPSTREAM ASPP INTRON ASPP
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	2.860e^-5	0.842	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	2.860e^-5	0.842	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1017410	2R_1017410_SNP [dm3] 2R_5129905_SNP [dm6]	C	T	2.906e^-5	0.842	DOWNSTREAM CR43256 INTERGENIC
2R	9174432	2R_9174432_SNP [dm3] 2R_13286927_SNP [dm6]	T	C	2.915e^-5	0.842	INTRON Dh31-R
2L	8504943	2L_8504943_SNP [dm3] 2L_8504943_SNP [dm6]	T	C	2.917e^-5	0.842	INTRON Dh31
3L	19024253	3L_19024253_SNP [dm3] 3L_19031153_SNP [dm6]	T	A	3.037e^-5	0.863	INTRON nkd	TF binding site BDTNP1_TFBS_dl
2L	13050703	2L_13050703_SNP [dm3] 2L_13050703_SNP [dm6]	A	G	3.200e^-5	0.896	INTRON CG9932
3R	1956520	3R_1956520_SNP [dm3] 3R_6130798_SNP [dm6]	T	C	3.268e^-5	0.896	INTERGENIC
2L	12443152	2L_12443152_SNP [dm3] 2L_12443152_SNP [dm6]	A	G	3.334e^-5	0.896	SYNONYMOUS_CODING Oatp33Ea
2R	18708363	2R_18708363_DEL [dm3] 2R_22820858_DEL [dm6]	TT	T	3.343e^-5	0.896	UPSTREAM CG42284 INTRON CG30271	TF binding site mE1_TFBS_chinmo
3R	6194218	3R_6194218_INS [dm3] 3R_10368496_INS [dm6]	C	CA	3.421e^-5	0.904	INTRON Rfx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23848442	3R_23848442_INS [dm3] 3R_28022720_INS [dm6]	A	AA	3.662e^-5	0.943	INTERGENIC
2R	16439648	2R_16439648_SNP [dm3] 2R_20552143_SNP [dm6]	T	G	3.708e^-5	0.943	UPSTREAM CG13430 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	20904406	3L_20904406_SNP [dm3] 3L_20911306_SNP [dm6]	G	T	3.729e^-5	0.943	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15309937	3R_15309937_SNP [dm3] 3R_19484215_SNP [dm6]	A	G	3.803e^-5	0.943	SYNONYMOUS_CODING Dys INTRON Dys
2L	8512075	2L_8512075_SNP [dm3] 2L_8512075_SNP [dm6]	A	T	3.861e^-5	0.943	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	15052450	2L_15052450_SNP [dm3] 2L_15052450_SNP [dm6]	T	C	3.888e^-5	0.943	INTRON ck	regulatory region REDfly_CRMs
3R	19463224	3R_19463224_SNP [dm3] 3R_23637502_SNP [dm6]	C	T	3.939e^-5	0.943	INTRON CG31145
3R	11416141	3R_11416141_SNP [dm3] 3R_15590419_SNP [dm6]	G	A	3.972e^-5	0.943	INTERGENIC
2L	12443179	2L_12443179_SNP [dm3] 2L_12443179_SNP [dm6]	G	A	4.066e^-5	0.953	SYNONYMOUS_CODING Oatp33Ea
3L	23338341	3L_23338341_SNP [dm3] 3L_23345241_SNP [dm6]	G	T	4.120e^-5	0.953	INTRON CG32230	transposable element FlyBase
2L	10452602	2L_10452602_INS [dm3] 2L_10452602_INS [dm6]	AG	CTA	4.255e^-5	0.953	UPSTREAM ppk10 DOWNSTREAM CG5322 INTERGENIC
2L	10452608	2L_10452608_INS [dm3] 2L_10452608_INS [dm6]	C	TGGA	4.255e^-5	0.953	UPSTREAM ppk10 DOWNSTREAM CG5322 INTERGENIC
2R	11545940	2R_11545940_SNP [dm3] 2R_15658435_SNP [dm6]	G	T	4.318e^-5	0.953	INTRON fus	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	15907897	3R_15907897_SNP [dm3] 3R_20082175_SNP [dm6]	G	C	4.402e^-5	0.953	SYNONYMOUS_CODING Rh3	TF binding site mE1_TFBS_cad
3L	9143795	3L_9143795_SNP [dm3] 3L_9150695_SNP [dm6]	A	T	4.406e^-5	0.953	UTR_3_PRIME Rdl
2R	2780137	2R_2780137_SNP [dm3] 2R_6892632_SNP [dm6]	G	C	4.420e^-5	0.953	INTRON CG30158
3R	12799709	3R_12799709_SNP [dm3] 3R_16973987_SNP [dm6]	T	G	4.479e^-5	0.955	INTERGENIC
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	4.531e^-5	0.955	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
X	14470614	X_14470614_SNP [dm3] X_14576581_SNP [dm6]	T	C	4.595e^-5	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	23476747	3L_23476747_SNP [dm3] 3L_23483647_SNP [dm6]	G	T	4.774e^-5	0.961	INTERGENIC	transposable element FlyBase
X	14855617	X_14855617_SNP [dm3] X_14961584_SNP [dm6]	A	G	4.787e^-5	0.961	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
3R	16814302	3R_16814302_SNP [dm3] 3R_20988580_SNP [dm6]	C	T	4.794e^-5	0.961	UPSTREAM CG43446 & 1 other INTRON Calx
2L	313446	2L_313446_SNP [dm3] 2L_313446_SNP [dm6]	A	G	4.817e^-5	0.961	INTRON Plc21C
2L	13429582	2L_13429582_SNP [dm3] 2L_13429582_SNP [dm6]	T	A	5.033e^-5	0.981	INTRON CG42784	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	18369048	2R_18369048_SNP [dm3] 2R_22481543_SNP [dm6]	G	A	5.153e^-5	0.981	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7378830	2R_7378830_INS [dm3] 2R_11491325_INS [dm6]	C	CGAC	5.224e^-5	0.981	INTRON inv
3L	23228187	3L_23228187_SNP [dm3] 3L_23235087_SNP [dm6]	A	T	5.235e^-5	0.981	INTRON nAChRalpha4
3R	11416152	3R_11416152_SNP [dm3] 3R_15590430_SNP [dm6]	T	A	5.368e^-5	0.981	INTERGENIC
3R	16649476	3R_16649476_SNP [dm3] 3R_20823754_SNP [dm6]	T	C	5.409e^-5	0.981	DOWNSTREAM snoRNA:Psi28S-2562 & 2 others INTRON CG17272	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
2L	8504536	2L_8504536_SNP [dm3] 2L_8504536_SNP [dm6]	A	G	5.471e^-5	0.981	INTRON Dh31
2L	4813252	2L_4813252_SNP [dm3] 2L_4813252_SNP [dm6]	T	A	5.550e^-5	0.981	UTR_5_PRIME CG15629
2L	7465335	2L_7465335_SNP [dm3] 2L_7465335_SNP [dm6]	C	T	5.631e^-5	0.981	INTERGENIC
2L	5578196	2L_5578196_SNP [dm3] 2L_5578196_SNP [dm6]	G	A	5.654e^-5	0.981	INTERGENIC
3L	5241588	3L_5241588_SNP [dm3] 3L_5248488_SNP [dm6]	A	G	5.666e^-5	0.981	UPSTREAM shep INTRON shep
2R	12865793	2R_12865793_SNP [dm3] 2R_16978288_SNP [dm6]	A	C	5.671e^-5	0.981	INTRON Cbp53E
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	5.739e^-5	0.981	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
3R	22765778	3R_22765778_SNP [dm3] 3R_26940056_SNP [dm6]	G	A	5.748e^-5	0.981	INTRON sda
2R	12346738	2R_12346738_SNP [dm3] 2R_16459233_SNP [dm6]	G	A	5.752e^-5	0.981	INTERGENIC
2R	12346742	2R_12346742_SNP [dm3] 2R_16459237_SNP [dm6]	C	T	5.756e^-5	0.981	INTERGENIC
2L	4135396	2L_4135396_SNP [dm3] 2L_4135396_SNP [dm6]	G	C	5.976e^-5	0.994	INTERGENIC
3L	3874087	3L_3874087_SNP [dm3] 3L_3874087_SNP [dm6]	C	A	6.264e^-5	0.994	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6511636	3R_6511636_SNP [dm3] 3R_10685914_SNP [dm6]	A	T	6.273e^-5	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6511659	3R_6511659_SNP [dm3] 3R_10685937_SNP [dm6]	G	T	6.273e^-5	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5792958	2R_5792958_SNP [dm3] 2R_9905453_SNP [dm6]	C	T	6.331e^-5	0.994	UPSTREAM FMRFa INTERGENIC	TF binding site mE1_TFBS_cnc
3R	21357214	3R_21357214_SNP [dm3] 3R_25531492_SNP [dm6]	T	C	6.340e^-5	0.994	INTRON msi
2R	14571736	2R_14571736_DEL [dm3] 2R_18684231_DEL [dm6]	AA	A	6.448e^-5	0.994	UTR_3_PRIME CG44433 UPSTREAM CG44434 & 1 other
2L	1531696	2L_1531696_SNP [dm3] 2L_1531696_SNP [dm6]	G	C	6.454e^-5	0.994	INTERGENIC
3R	14140519	3R_14140519_SNP [dm3] 3R_18314797_SNP [dm6]	T	G	6.455e^-5	0.994	UPSTREAM PKD INTERGENIC	TF binding site mE1_TFBS_Trl
X	16051099	X_16051099_SNP [dm3] X_16157066_SNP [dm6]	T	C	6.467e^-5	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5694646	3R_5694646_SNP [dm3] 3R_9868924_SNP [dm6]	A	G	6.565e^-5	0.994	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
X	8913562	X_8913562_SNP [dm3] X_9019529_SNP [dm6]	T	C	6.764e^-5	0.994	SYNONYMOUS_CODING rdgA INTRON CR43836
2L	7463093	2L_7463093_INS [dm3] 2L_7463093_INS [dm6]	A	AA	6.844e^-5	0.994	UPSTREAM Gr28b INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12292555	X_12292555_SNP [dm3] X_12398522_SNP [dm6]	T	A	6.931e^-5	0.994	INTERGENIC
3L	5876382	3L_5876382_SNP [dm3] 3L_5883282_SNP [dm6]	C	T	6.931e^-5	0.994	SYNONYMOUS_CODING CG13287	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10345655	2L_10345655_SNP [dm3] 2L_10345655_SNP [dm6]	C	G	7.121e^-5	0.994	SYNONYMOUS_CODING CG5022
2L	8504959	2L_8504959_SNP [dm3] 2L_8504959_SNP [dm6]	T	C	7.241e^-5	0.994	INTRON Dh31
3R	14140404	3R_14140404_SNP [dm3] 3R_18314682_SNP [dm6]	T	C	7.270e^-5	0.994	UPSTREAM PKD INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	13959259	X_13959259_SNP [dm3] X_14065226_SNP [dm6]	C	A	7.371e^-5	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9508560	2R_9508560_SNP [dm3] 2R_13621055_SNP [dm6]	T	G	7.621e^-5	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	14473309	X_14473309_SNP [dm3] X_14579276_SNP [dm6]	T	C	7.632e^-5	0.994	INTERGENIC
3R	16647621	3R_16647621_SNP [dm3] 3R_20821899_SNP [dm6]	C	A	7.641e^-5	0.994	UPSTREAM RpS20 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	20032312	2L_20032312_SNP [dm3] 2L_20032312_SNP [dm6]	C	T	7.697e^-5	0.994	INTRON sNPF
3L	15957664	3L_15957664_SNP [dm3] 3L_15964564_SNP [dm6]	A	G	7.718e^-5	0.994	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9284789	3L_9284789_SNP [dm3] 3L_9291689_SNP [dm6]	A	G	7.771e^-5	0.994	INTERGENIC
3R	2495069	3R_2495069_SNP [dm3] 3R_6669347_SNP [dm6]	A	T	7.857e^-5	0.994	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	22581319	3R_22581319_SNP [dm3] 3R_26755597_SNP [dm6]	T	C	7.867e^-5	0.994	INTERGENIC
3R	17610733	3R_17610733_SNP [dm3] 3R_21785011_SNP [dm6]	T	C	7.874e^-5	0.994	UTR_3_PRIME CASK DOWNSTREAM CASK EXON CRG	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	16369743	2R_16369743_SNP [dm3] 2R_20482238_SNP [dm6]	T	G	7.930e^-5	0.994	INTERGENIC
3L	9986141	3L_9986141_SNP [dm3] 3L_9993041_SNP [dm6]	G	C	7.939e^-5	0.994	INTRON dpr6
2R	9508562	2R_9508562_SNP [dm3] 2R_13621057_SNP [dm6]	T	C	8.020e^-5	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	7611528	3L_7611528_SNP [dm3] 3L_7618428_SNP [dm6]	T	C	8.087e^-5	0.994	INTRON CG33275
2L	1531674	2L_1531674_SNP [dm3] 2L_1531674_SNP [dm6]	A	T	8.100e^-5	0.994	INTERGENIC
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	8.118e^-5	0.994	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
X	19568846	X_19568846_SNP [dm3] X_19674813_SNP [dm6]	C	T	8.139e^-5	0.994	SYNONYMOUS_CODING et	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26060102	3R_26060102_SNP [dm3] 3R_30234380_SNP [dm6]	G	T	8.211e^-5	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12252908	2R_12252908_SNP [dm3] 2R_16365403_SNP [dm6]	A	G	8.215e^-5	0.994	UTR_5_PRIME CG15711	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5796413	2R_5796413_SNP [dm3] 2R_9908908_SNP [dm6]	T	G	8.316e^-5	0.994	INTRON FMRFa	TF binding site mE1_TFBS_chinmo
2L	8504615	2L_8504615_SNP [dm3] 2L_8504615_SNP [dm6]	C	T	8.376e^-5	0.994	INTRON Dh31
2R	13516036	2R_13516036_INS [dm3] 2R_17628531_INS [dm6]	A	AGTA	8.458e^-5	0.994	UTR_3_PRIME rhi INTRON CG10936
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	8.499e^-5	0.994	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2R	16793567	2R_16793567_SNP [dm3] 2R_20906062_SNP [dm6]	A	C	8.810e^-5	0.994	INTERGENIC
3R	17610728	3R_17610728_SNP [dm3] 3R_21785006_SNP [dm6]	C	A	8.820e^-5	0.994	UTR_3_PRIME CASK DOWNSTREAM CASK EXON CRG	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9142581	3L_9142581_SNP [dm3] 3L_9149481_SNP [dm6]	G	T	8.822e^-5	0.994	UTR_3_PRIME Rdl
2L	19113615	2L_19113615_SNP [dm3] 2L_19113615_SNP [dm6]	C	T	8.851e^-5	0.994	SYNONYMOUS_CODING amd UPSTREAM CG10561	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	1777379	3R_1777379_SNP [dm3] 3R_5951657_SNP [dm6]	G	C	8.904e^-5	0.994	INTRON CG34113
3L	18716266	3L_18716266_SNP [dm3] 3L_18723166_SNP [dm6]	C	T	8.955e^-5	0.994	UPSTREAM CR43985 INTRON CG12477	TF binding site mE1_TFBS_cad
X	2277475	X_2277475_SNP [dm3] X_2383442_SNP [dm6]	C	G	8.997e^-5	0.994	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14853283	X_14853283_SNP [dm3] X_14959250_SNP [dm6]	G	A	9.001e^-5	0.994	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	1038445	2R_1038445_SNP [dm3] 2R_5150940_SNP [dm6]	C	A	9.045e^-5	0.994	INTRON Atf6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15946266	3L_15946266_SNP [dm3] 3L_15953166_SNP [dm6]	G	C	9.054e^-5	0.994	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12799644	3R_12799644_SNP [dm3] 3R_16973922_SNP [dm6]	A	C	9.176e^-5	0.994	INTERGENIC
2L	7465360	2L_7465360_SNP [dm3] 2L_7465360_SNP [dm6]	A	G	9.326e^-5	0.994	INTERGENIC
3R	25775575	3R_25775575_SNP [dm3] 3R_29949853_SNP [dm6]	C	A	9.438e^-5	0.994	DOWNSTREAM TkR99D INTERGENIC
2L	8507887	2L_8507887_SNP [dm3] 2L_8507887_SNP [dm6]	G	T	9.461e^-5	0.994	INTERGENIC
2R	5778612	2R_5778612_SNP [dm3] 2R_9891107_SNP [dm6]	G	A	9.488e^-5	0.994	UTR_3_PRIME CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2L	6231313	2L_6231313_SNP [dm3] 2L_6231313_SNP [dm6]	G	A	9.606e^-5	0.994	UPSTREAM CR44823 INTERGENIC
3L	5799191	3L_5799191_SNP [dm3] 3L_5806091_SNP [dm6]	A	C	9.673e^-5	0.994	SYNONYMOUS_CODING S6k DOWNSTREAM CG42272	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	8523117	2L_8523117_SNP [dm3] 2L_8523117_SNP [dm6]	A	G	9.723e^-5	0.994	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	6496102	3L_6496102_SNP [dm3] 3L_6503002_SNP [dm6]	C	G	9.731e^-5	0.994	INTRON sfl
3L	10468975	3L_10468975_SNP [dm3] 3L_10475875_SNP [dm6]	A	G	9.741e^-5	0.994	INTERGENIC
2L	10627565	2L_10627565_SNP [dm3] 2L_10627565_SNP [dm6]	T	G	9.768e^-5	0.994	UTR_3_PRIME Trim9 DOWNSTREAM Trim9
3L	4952010	3L_4952010_SNP [dm3] 3L_4952010_SNP [dm6]	A	C	9.813e^-5	0.994	INTRON Con	TF binding site mE1_TFBS_chinmo
2L	13050887	2L_13050887_SNP [dm3] 2L_13050887_SNP [dm6]	C	G	9.862e^-5	0.994	INTRON CG9932
X	20978443	X_20978443_SNP [dm3] X_21107416_SNP [dm6]	A	T	9.964e^-5	0.994	INTRON stg1 & 1 other
3L	5248168	3L_5248168_SNP [dm3] 3L_5255068_SNP [dm6]	T	G	9.979e^-5	0.994	INTRON shep
2R	14885562	2R_14885562_SNP [dm3] 2R_18998057_SNP [dm6]	G	C	1.007e^-4	0.994	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20134715	2L_20134715_SNP [dm3] 2L_20134715_SNP [dm6]	T	G	1.014e^-4	0.994	NON_SYNONYMOUS_CODING CG10651
2L	4812994	2L_4812994_SNP [dm3] 2L_4812994_SNP [dm6]	A	G	1.019e^-4	0.994	UPSTREAM CG15629 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	10096559	3R_10096559_SNP [dm3] 3R_14270837_SNP [dm6]	A	G	1.022e^-4	0.994	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	14471701	X_14471701_SNP [dm3] X_14577668_SNP [dm6]	G	T	1.025e^-4	0.994	INTERGENIC
3R	17610750	3R_17610750_SNP [dm3] 3R_21785028_SNP [dm6]	A	C	1.026e^-4	0.994	UTR_3_PRIME CASK DOWNSTREAM CASK EXON CRG	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	16843933	2L_16843933_SNP [dm3] 2L_16843933_SNP [dm6]	G	A	1.032e^-4	0.994	SYNONYMOUS_CODING CG13284
3R	11416137	3R_11416137_SNP [dm3] 3R_15590415_SNP [dm6]	G	T	1.034e^-4	0.994	INTERGENIC
2L	20054676	2L_20054676_SNP [dm3] 2L_20054676_SNP [dm6]	A	G	1.036e^-4	0.994	SYNONYMOUS_CODING sNPF
3L	9142650	3L_9142650_SNP [dm3] 3L_9149550_SNP [dm6]	A	T	1.037e^-4	0.994	UTR_3_PRIME Rdl
3R	11416146	3R_11416146_SNP [dm3] 3R_15590424_SNP [dm6]	A	C	1.039e^-4	0.994	INTERGENIC
X	11904528	X_11904528_SNP [dm3] X_12010495_SNP [dm6]	G	C	1.048e^-4	0.994	NON_SYNONYMOUS_CODING CG1492 DOWNSTREAM CG1806
X	22232347	X_22232347_DEL [dm3] X_22830511_DEL [dm6]	GCTGCTG	G	1.052e^-4	0.994	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2R	20108261	2R_20108261_SNP [dm3] 2R_24220738_SNP [dm6]	G	A	1.065e^-4	0.994	INTRON CG30419
3L	4657337	3L_4657337_DEL [dm3] 3L_4657337_DEL [dm6]	GCAGAGGCACA...	G	1.066e^-4	0.994	INTRON axo	TF binding site mE1_TFBS_inv
X	4251555	X_4251555_SNP [dm3] X_4357522_SNP [dm6]	C	T	1.072e^-4	0.994	INTRON norpA
3L	3726561	3L_3726561_SNP [dm3] 3L_3726561_SNP [dm6]	A	T	1.088e^-4	0.994	INTRON CG32264
3R	25240360	3R_25240360_INS [dm3] 3R_29414638_INS [dm6]	C	CC	1.094e^-4	0.994	INTRON Ptp99A
3L	3732514	3L_3732514_DEL [dm3] 3L_3732514_DEL [dm6]	AAGTGA	A	1.095e^-4	0.994	INTRON CG32264
3L	3726580	3L_3726580_SNP [dm3] 3L_3726580_SNP [dm6]	C	T	1.095e^-4	0.994	INTRON CG32264
3L	3726583	3L_3726583_SNP [dm3] 3L_3726583_SNP [dm6]	C	G	1.095e^-4	0.994	INTRON CG32264
3L	8151198	3L_8151198_SNP [dm3] 3L_8158098_SNP [dm6]	G	A	1.097e^-4	0.994	INTRON CG42445
2L	20703813	2L_20703813_SNP [dm3] 2L_20703813_SNP [dm6]	C	T	1.104e^-4	0.994	INTRON Hr38
3R	11416143	3R_11416143_SNP [dm3] 3R_15590421_SNP [dm6]	G	A	1.109e^-4	0.994	INTERGENIC
2L	3269385	2L_3269385_SNP [dm3] 2L_3269385_SNP [dm6]	G	A	1.109e^-4	0.994	UPSTREAM CG3347 DOWNSTREAM CR44484 INTERGENIC
2L	734375	2L_734375_SNP [dm3] 2L_734375_SNP [dm6]	T	G	1.110e^-4	0.994	INTERGENIC
2L	10619215	2L_10619215_SNP [dm3] 2L_10619215_SNP [dm6]	G	A	1.115e^-4	0.994	INTRON Trim9
3L	5460143	3L_5460143_SNP [dm3] 3L_5467043_SNP [dm6]	T	A	1.116e^-4	0.994	INTERGENIC
3R	2453103	3R_2453103_INS [dm3] 3R_6627381_INS [dm6]	T	TCCTTA	1.118e^-4	0.994	DOWNSTREAM CG15177 INTRON sowi
2L	5964645	2L_5964645_SNP [dm3] 2L_5964645_SNP [dm6]	A	G	1.136e^-4	0.994	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd
3L	5992567	3L_5992567_SNP [dm3] 3L_5999467_SNP [dm6]	C	A	1.136e^-4	0.994	INTRON PVRAP
3R	3202451	3R_3202451_SNP [dm3] 3R_7376729_SNP [dm6]	G	A	1.139e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12799857	3R_12799857_SNP [dm3] 3R_16974135_SNP [dm6]	T	A	1.145e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	15435800	2R_15435800_SNP [dm3] 2R_19548295_SNP [dm6]	C	A	1.156e^-4	0.994	INTRON sm
X	6980828	X_6980828_SNP [dm3] X_7086795_SNP [dm6]	A	T	1.157e^-4	0.994	UPSTREAM mir-4956 INTRON Sxl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	4400596	2L_4400596_SNP [dm3] 2L_4400596_SNP [dm6]	T	G	1.158e^-4	0.994	UPSTREAM CG33003 DOWNSTREAM l_2_k05819 INTERGENIC
3R	19804234	3R_19804234_SNP [dm3] 3R_23978512_SNP [dm6]	A	T	1.159e^-4	0.994	INTRON CG31140
3R	11416170	3R_11416170_SNP [dm3] 3R_15590448_SNP [dm6]	G	A	1.162e^-4	0.994	INTERGENIC
2L	12443128	2L_12443128_SNP [dm3] 2L_12443128_SNP [dm6]	C	T	1.162e^-4	0.994	SYNONYMOUS_CODING Oatp33Ea
2L	13722022	2L_13722022_SNP [dm3] 2L_13722022_SNP [dm6]	T	G	1.179e^-4	0.994	DOWNSTREAM CG9014 INTERGENIC
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	1.182e^-4	0.994	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	6428159	3L_6428159_SNP [dm3] 3L_6435059_SNP [dm6]	C	T	1.193e^-4	0.994	INTRON CG42747
3L	6497592	3L_6497592_SNP [dm3] 3L_6504492_SNP [dm6]	T	C	1.202e^-4	0.994	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	23340618	3L_23340618_SNP [dm3] 3L_23347518_SNP [dm6]	T	G	1.213e^-4	0.994	INTERGENIC	transposable element FlyBase
2R	6879367	2R_6879367_SNP [dm3] 2R_10991862_SNP [dm6]	G	A	1.218e^-4	0.994	INTRON luna	TF binding site mE1_TFBS_chinmo
X	11907152	X_11907152_SNP [dm3] X_12013119_SNP [dm6]	C	A	1.226e^-4	0.994	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11910520	2R_11910520_SNP [dm3] 2R_16023015_SNP [dm6]	C	T	1.230e^-4	0.994	INTRON CG8399
2R	8486258	2R_8486258_SNP [dm3] 2R_12598753_SNP [dm6]	T	A	1.245e^-4	0.994	INTRON Amph
2L	8325962	2L_8325962_SNP [dm3] 2L_8325962_SNP [dm6]	T	C	1.253e^-4	0.994	UPSTREAM CG7781 INTERGENIC
3R	12799855	3R_12799855_SNP [dm3] 3R_16974133_SNP [dm6]	T	A	1.256e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	19804224	3R_19804224_SNP [dm3] 3R_23978502_SNP [dm6]	A	G	1.260e^-4	0.994	INTRON CG31140
3L	12722056	3L_12722056_SNP [dm3] 3L_12728956_SNP [dm6]	G	T	1.264e^-4	0.994	INTERGENIC
2L	9753430	2L_9753430_SNP [dm3] 2L_9753430_SNP [dm6]	G	A	1.266e^-4	0.994	INTERGENIC
2R	12346809	2R_12346809_SNP [dm3] 2R_16459304_SNP [dm6]	A	C	1.273e^-4	0.994	INTERGENIC
3L	5775101	3L_5775101_SNP [dm3] 3L_5782001_SNP [dm6]	T	C	1.276e^-4	0.994	SYNONYMOUS_CODING PGRP-LD UTR_3_PRIME Pmi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12722068	3L_12722068_SNP [dm3] 3L_12728968_SNP [dm6]	C	T	1.278e^-4	0.994	INTERGENIC
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	1.285e^-4	0.994	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	1.285e^-4	0.994	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19463212	3R_19463212_SNP [dm3] 3R_23637490_SNP [dm6]	T	A	1.286e^-4	0.994	INTRON CG31145
2R	12865792	2R_12865792_SNP [dm3] 2R_16978287_SNP [dm6]	G	A	1.296e^-4	0.994	INTRON Cbp53E
2L	13722062	2L_13722062_SNP [dm3] 2L_13722062_SNP [dm6]	C	T	1.298e^-4	0.994	DOWNSTREAM CG9014 INTERGENIC
3L	18098441	3L_18098441_SNP [dm3] 3L_18105341_SNP [dm6]	C	G	1.308e^-4	0.994	INTRON CG13698	TF binding site BDTNP1_TFBS_dl
2R	12253117	2R_12253117_SNP [dm3] 2R_16365612_SNP [dm6]	A	C	1.319e^-4	0.994	UTR_5_PRIME CG15711	TF binding site BDTNP1_TFBS_twi
3R	10270903	3R_10270903_SNP [dm3] 3R_14445181_SNP [dm6]	C	T	1.320e^-4	0.994	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10815127	3L_10815127_SNP [dm3] 3L_10822027_SNP [dm6]	A	T	1.324e^-4	0.994	INTERGENIC
2R	18792290	2R_18792290_SNP [dm3] 2R_22904767_SNP [dm6]	C	T	1.334e^-4	0.994	INTRON nahoda
2L	8511667	2L_8511667_SNP [dm3] 2L_8511667_SNP [dm6]	C	G	1.345e^-4	0.994	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14571704	2R_14571704_DEL [dm3] 2R_18684199_DEL [dm6]	GTG	G	1.347e^-4	0.994	UPSTREAM CG44434 & 1 other DOWNSTREAM CG44433 INTERGENIC
2R	9512482	2R_9512482_SNP [dm3] 2R_13624977_SNP [dm6]	G	C	1.354e^-4	0.994	INTRON fas	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	8512024	2L_8512024_SNP [dm3] 2L_8512024_SNP [dm6]	T	G	1.356e^-4	0.994	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	15779220	2L_15779220_SNP [dm3] 2L_15779220_SNP [dm6]	C	A	1.359e^-4	0.994	INTERGENIC
3R	11416098	3R_11416098_DEL [dm3] 3R_15590376_DEL [dm6]	AA	A	1.361e^-4	0.994	INTERGENIC
3R	13587671	3R_13587671_SNP [dm3] 3R_17761949_SNP [dm6]	T	G	1.361e^-4	0.994	INTRON TyrR
2R	18605375	2R_18605375_SNP [dm3] 2R_22717870_SNP [dm6]	T	C	1.366e^-4	0.994	SPLICE_SITE_REGION jbug DOWNSTREAM CG30268 INTRON jbug	TF binding site mE1_TFBS_chinmo
3L	15948242	3L_15948242_SNP [dm3] 3L_15955142_SNP [dm6]	G	A	1.368e^-4	0.994	UTR_5_PRIME GXIVsPLA2 UPSTREAM Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3726563	3L_3726563_SNP [dm3] 3L_3726563_SNP [dm6]	C	A	1.384e^-4	0.994	INTRON CG32264
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	1.385e^-4	0.994	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	4422757	2L_4422757_SNP [dm3] 2L_4422757_SNP [dm6]	T	C	1.390e^-4	0.994	INTRON CG15431
3R	14979279	3R_14979279_SNP [dm3] 3R_19153557_SNP [dm6]	C	T	1.394e^-4	0.994	UTR_5_PRIME CG5835 DOWNSTREAM CG11779	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	9249830	2R_9249830_SNP [dm3] 2R_13362325_SNP [dm6]	C	G	1.398e^-4	0.994	EXON CR45312
3L	8197807	3L_8197807_DEL [dm3] 3L_8204707_DEL [dm6]	CGCATTCCAATCCGAACCGC...	G	1.403e^-4	0.994	INTERGENIC
2L	13413440	2L_13413440_DEL [dm3] 2L_13413440_DEL [dm6]	AA	A	1.404e^-4	0.994	UTR_3_PRIME CG16848 DOWNSTREAM CG16956	TF binding site mE1_TFBS_cad
2R	5781559	2R_5781559_SNP [dm3] 2R_9894054_SNP [dm6]	C	T	1.404e^-4	0.994	NON_SYNONYMOUS_CODING CG30007
X	21475339	X_21475339_SNP [dm3] X_21604312_SNP [dm6]	C	A	1.428e^-4	0.994	INTRON CG14476	transposable element FlyBase
3R	16645966	3R_16645966_SNP [dm3] 3R_20820244_SNP [dm6]	T	C	1.430e^-4	0.994	SYNONYMOUS_CODING CG17271 INTRON CG17271
3L	4951998	3L_4951998_SNP [dm3] 3L_4951998_SNP [dm6]	G	A	1.431e^-4	0.994	INTRON Con	TF binding site mE1_TFBS_chinmo
X	6318238	X_6318238_SNP [dm3] X_6424205_SNP [dm6]	A	T	1.432e^-4	0.994	INTRON CG42340
X	14853584	X_14853584_SNP [dm3] X_14959551_SNP [dm6]	T	C	1.436e^-4	0.994	INTRON eag	TF binding site mE1_TFBS_bab1
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	1.438e^-4	0.994	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
3L	23461864	3L_23461864_SNP [dm3] 3L_23468764_SNP [dm6]	C	A	1.442e^-4	0.994	INTERGENIC	transposable element FlyBase
X	3737607	X_3737607_SNP [dm3] X_3843574_SNP [dm6]	T	C	1.449e^-4	0.994	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8875147	3L_8875147_SNP [dm3] 3L_8882047_SNP [dm6]	A	C	1.454e^-4	0.994	INTRON dally
2R	3856156	2R_3856156_SNP [dm3] 2R_7968651_SNP [dm6]	A	C	1.460e^-4	0.994	UTR_3_PRIME CG8726 UPSTREAM CG14763 INTRON nito
2L	12423704	2L_12423704_SNP [dm3] 2L_12423704_SNP [dm6]	G	T	1.462e^-4	0.994	UPSTREAM vir-1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5776084	3L_5776084_SNP [dm3] 3L_5782984_SNP [dm6]	A	G	1.474e^-4	0.994	NON_SYNONYMOUS_CODING PGRP-LD UTR_3_PRIME Pmi DOWNSTREAM Cralbp	TF binding site mE1_TFBS_cad
2L	16806185	2L_16806185_SNP [dm3] 2L_16806185_SNP [dm6]	G	C	1.485e^-4	0.994	INTRON CG13280 & 1 other
2L	5667938	2L_5667938_SNP [dm3] 2L_5667938_SNP [dm6]	C	T	1.487e^-4	0.994	INTRON Hsp60C
3R	3373372	3R_3373372_DEL [dm3] 3R_7547650_DEL [dm6]	AA	A	1.490e^-4	0.994	INTRON alpha-Est1
3R	19626169	3R_19626169_SNP [dm3] 3R_23800447_SNP [dm6]	A	T	1.493e^-4	0.994	INTRON mbc
X	2277460	X_2277460_DEL [dm3] X_2383427_DEL [dm6]	AA	A	1.494e^-4	0.994	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8513167	2L_8513167_SNP [dm3] 2L_8513167_SNP [dm6]	C	T	1.498e^-4	0.994	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	16439656	2R_16439656_SNP [dm3] 2R_20552151_SNP [dm6]	T	G	1.502e^-4	0.994	UPSTREAM CG13430 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16647376	3R_16647376_SNP [dm3] 3R_20821654_SNP [dm6]	T	C	1.504e^-4	0.994	NON_SYNONYMOUS_CODING CG17271 UPSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	15435892	2R_15435892_SNP [dm3] 2R_19548387_SNP [dm6]	T	C	1.506e^-4	0.994	INTRON sm
X	6318279	X_6318279_SNP [dm3] X_6424246_SNP [dm6]	T	G	1.508e^-4	0.994	INTRON CG42340
2L	6231334	2L_6231334_SNP [dm3] 2L_6231334_SNP [dm6]	A	T	1.512e^-4	0.994	UPSTREAM CR44823 INTERGENIC
3L	8875144	3L_8875144_SNP [dm3] 3L_8882044_SNP [dm6]	C	A	1.520e^-4	0.994	INTRON dally
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	1.535e^-4	0.994	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	313387	2L_313387_SNP [dm3] 2L_313387_SNP [dm6]	G	A	1.540e^-4	0.994	INTRON Plc21C
3R	3374215	3R_3374215_SNP [dm3] 3R_7548493_SNP [dm6]	G	T	1.557e^-4	0.994	INTRON alpha-Est1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10629963	2L_10629963_SNP [dm3] 2L_10629963_SNP [dm6]	A	T	1.562e^-4	0.994	NON_SYNONYMOUS_CODING CG7329
3R	20442967	3R_20442967_SNP [dm3] 3R_24617245_SNP [dm6]	A	C	1.575e^-4	0.994	NON_SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	14842821	X_14842821_SNP [dm3] X_14948788_SNP [dm6]	A	C	1.577e^-4	0.994	INTRON pdgy
2L	11203325	2L_11203325_SNP [dm3] 2L_11203325_SNP [dm6]	C	T	1.587e^-4	0.994	UTR_5_PRIME Ca-beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6511656	3R_6511656_SNP [dm3] 3R_10685934_SNP [dm6]	C	A	1.612e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14844195	X_14844195_SNP [dm3] X_14950162_SNP [dm6]	C	G	1.614e^-4	0.994	INTRON pdgy	TF binding site BDTNP1_TFBS_dl
2L	1378814	2L_1378814_SNP [dm3] 2L_1378814_SNP [dm6]	C	T	1.626e^-4	0.994	INTERGENIC
3L	15947003	3L_15947003_SNP [dm3] 3L_15953903_SNP [dm6]	T	G	1.627e^-4	0.994	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16370589	2R_16370589_SNP [dm3] 2R_20483084_SNP [dm6]	G	T	1.638e^-4	0.994	INTERGENIC
3R	19261984	3R_19261984_SNP [dm3] 3R_23436262_SNP [dm6]	C	T	1.639e^-4	0.994	INTRON CG4374
2R	5771199	2R_5771199_SNP [dm3] 2R_9883694_SNP [dm6]	C	T	1.641e^-4	0.994	UTR_3_PRIME CG1513
2L	313845	2L_313845_SNP [dm3] 2L_313845_SNP [dm6]	C	T	1.660e^-4	0.994	INTRON Plc21C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19892922	2R_19892922_SNP [dm3] 2R_24005399_SNP [dm6]	C	T	1.672e^-4	0.994	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19261972	3R_19261972_DEL [dm3] 3R_23436250_DEL [dm6]	TCGCCA	T	1.675e^-4	0.994	INTRON CG4374
2R	7379875	2R_7379875_SNP [dm3] 2R_11492370_SNP [dm6]	A	G	1.683e^-4	0.994	INTRON inv
2L	5412475	2L_5412475_INS [dm3] 2L_5412475_INS [dm6]	A	ATGTTGCACAATTAGCGTTC...	1.683e^-4	0.994	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	1.684e^-4	0.994	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7870381	3L_7870381_SNP [dm3] 3L_7877281_SNP [dm6]	A	G	1.685e^-4	0.994	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10932976	X_10932976_SNP [dm3] X_11038943_SNP [dm6]	A	G	1.707e^-4	0.994	INTRON CG42339	TF binding site BDTNP1_TFBS_twi
2L	20708762	2L_20708762_SNP [dm3] 2L_20708762_SNP [dm6]	C	G	1.711e^-4	0.994	INTRON Hr38
3R	23848890	3R_23848890_SNP [dm3] 3R_28023168_SNP [dm6]	G	A	1.716e^-4	0.994	INTERGENIC
2L	16183848	2L_16183848_SNP [dm3] 2L_16183848_SNP [dm6]	A	T	1.718e^-4	0.994	INTRON Ca-alpha1D
3R	2453095	3R_2453095_INS [dm3] 3R_6627373_INS [dm6]	C	CATCC	1.722e^-4	0.994	DOWNSTREAM CG15177 INTRON sowi
3L	15944366	3L_15944366_SNP [dm3] 3L_15951266_SNP [dm6]	A	G	1.728e^-4	0.994	INTRON Pka-C3
2L	10629964	2L_10629964_SNP [dm3] 2L_10629964_SNP [dm6]	T	A	1.742e^-4	0.994	NON_SYNONYMOUS_CODING CG7329
3L	7903130	3L_7903130_SNP [dm3] 3L_7910030_SNP [dm6]	C	A	1.748e^-4	0.994	UPSTREAM pbl INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22943712	3R_22943712_SNP [dm3] 3R_27117990_SNP [dm6]	T	G	1.759e^-4	0.994	SYNONYMOUS_CODING CG5880 UPSTREAM CG5882	TF binding site mE1_TFBS_cad
2L	13153556	2L_13153556_SNP [dm3] 2L_13153556_SNP [dm6]	T	G	1.777e^-4	0.994	INTERGENIC
3L	12155380	3L_12155380_SNP [dm3] 3L_12162280_SNP [dm6]	T	C	1.783e^-4	0.994	INTRON CG9760
2L	4814437	2L_4814437_SNP [dm3] 2L_4814437_SNP [dm6]	C	T	1.790e^-4	0.994	INTRON CG15629
3R	26468386	3R_26468386_SNP [dm3] 3R_30642664_SNP [dm6]	A	G	1.792e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15137382	3R_15137382_DEL [dm3] 3R_19311660_DEL [dm6]	AGTTAGTC	A	1.795e^-4	0.994	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	23275341	3L_23275341_SNP [dm3] 3L_23282241_SNP [dm6]	A	G	1.803e^-4	0.994	INTRON nAChRalpha4	transposable element FlyBase
2L	10793281	2L_10793281_SNP [dm3] 2L_10793281_SNP [dm6]	T	A	1.817e^-4	0.994	INTRON CG31869
3R	9675572	3R_9675572_SNP [dm3] 3R_13849850_SNP [dm6]	T	A	1.822e^-4	0.994	INTERGENIC
X	5020636	X_5020636_SNP [dm3] X_5126603_SNP [dm6]	A	T	1.823e^-4	0.994	INTRON rg & 1 other
2L	4896797	2L_4896797_SNP [dm3] 2L_4896797_SNP [dm6]	A	T	1.827e^-4	0.994	INTRON CG3036
3R	12799862	3R_12799862_SNP [dm3] 3R_16974140_SNP [dm6]	G	C	1.841e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	1087476	2L_1087476_SNP [dm3] 2L_1087476_SNP [dm6]	T	G	1.842e^-4	0.994	INTRON CG4629
2R	7369216	2R_7369216_SNP [dm3] 2R_11481711_SNP [dm6]	G	T	1.855e^-4	0.994	INTRON inv
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	1.857e^-4	0.994	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26616008	3R_26616008_SNP [dm3] 3R_30790286_SNP [dm6]	G	A	1.862e^-4	0.994	UTR_3_PRIME wts
3R	25463897	3R_25463897_SNP [dm3] 3R_29638175_SNP [dm6]	T	G	1.863e^-4	0.994	INTRON Dop1R2
3L	21901836	3L_21901836_SNP [dm3] 3L_21908736_SNP [dm6]	A	T	1.869e^-4	0.994	INTRON mub
3L	6396124	3L_6396124_SNP [dm3] 3L_6403024_SNP [dm6]	A	G	1.870e^-4	0.994	INTRON CG42747
2R	14637324	2R_14637324_SNP [dm3] 2R_18749819_SNP [dm6]	A	T	1.880e^-4	0.994	INTRON Hs3st-A
2L	734376	2L_734376_SNP [dm3] 2L_734376_SNP [dm6]	C	A	1.904e^-4	0.994	INTERGENIC
2L	9541221	2L_9541221_SNP [dm3] 2L_9541221_SNP [dm6]	G	A	1.908e^-4	0.994	SYNONYMOUS_CODING CG17855
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	1.914e^-4	0.994	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4896786	2L_4896786_SNP [dm3] 2L_4896786_SNP [dm6]	C	T	1.916e^-4	0.994	INTRON CG3036
2L	10793243	2L_10793243_SNP [dm3] 2L_10793243_SNP [dm6]	A	T	1.919e^-4	0.994	INTRON CG31869
3R	26298028	3R_26298028_SNP [dm3] 3R_30472306_SNP [dm6]	A	G	1.919e^-4	0.994	INTRON PH4alphaEFB
3L	14161749	3L_14161749_SNP [dm3] 3L_14168649_SNP [dm6]	G	C	1.919e^-4	0.994	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7191874	2L_7191874_SNP [dm3] 2L_7191874_SNP [dm6]	A	G	1.922e^-4	0.994	NON_SYNONYMOUS_CODING CG4497	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9626736	2L_9626736_SNP [dm3] 2L_9626736_SNP [dm6]	G	T	1.922e^-4	0.994	INTERGENIC
2L	8503747	2L_8503747_SNP [dm3] 2L_8503747_SNP [dm6]	C	A	1.928e^-4	0.994	INTRON Dh31
3R	25196977	3R_25196977_SNP [dm3] 3R_29371255_SNP [dm6]	C	T	1.928e^-4	0.994	INTERGENIC
3R	26062811	3R_26062811_SNP [dm3] 3R_30237089_SNP [dm6]	C	T	1.930e^-4	0.994	DOWNSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14908109	3R_14908109_SNP [dm3] 3R_19082387_SNP [dm6]	A	G	1.935e^-4	0.994	INTRON cdi
2L	9154814	2L_9154814_SNP [dm3] 2L_9154814_SNP [dm6]	C	G	1.936e^-4	0.994	INTRON CG32982
2L	9388853	2L_9388853_SNP [dm3] 2L_9388853_SNP [dm6]	A	C	1.938e^-4	0.994	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8485603	2R_8485603_INS [dm3] 2R_12598098_INS [dm6]	A	AAA	1.945e^-4	0.994	INTRON Amph
X	14852183	X_14852183_SNP [dm3] X_14958150_SNP [dm6]	C	A	1.950e^-4	0.994	INTRON eag
2L	8504057	2L_8504057_SNP [dm3] 2L_8504057_SNP [dm6]	G	A	1.951e^-4	0.994	INTRON Dh31
2L	12429066	2L_12429066_SNP [dm3] 2L_12429066_SNP [dm6]	C	T	1.951e^-4	0.994	SYNONYMOUS_CODING CG6388 DOWNSTREAM CG5435	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3149989	X_3149989_SNP [dm3] X_3255956_SNP [dm6]	C	T	1.955e^-4	0.994	UPSTREAM dnc INTRON dnc
2R	1099463	2R_1099463_SNP [dm3] 2R_5211958_SNP [dm6]	C	A	1.958e^-4	0.994	INTRON Nipped-A	transposable element FlyBase
3L	317562	3L_317562_SNP [dm3] 3L_317562_SNP [dm6]	G	A	1.968e^-4	0.994	NON_SYNONYMOUS_CODING CG34264 INTRON fwd
3R	26043754	3R_26043754_SNP [dm3] 3R_30218032_SNP [dm6]	A	C	1.971e^-4	0.994	INTERGENIC
X	9419217	X_9419217_SNP [dm3] X_9525184_SNP [dm6]	T	C	1.972e^-4	0.994	INTRON CG32700
3R	15906397	3R_15906397_SNP [dm3] 3R_20080675_SNP [dm6]	A	G	1.973e^-4	0.994	DOWNSTREAM Rh3 INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	8716476	X_8716476_SNP [dm3] X_8822443_SNP [dm6]	A	C	1.974e^-4	0.994	INTERGENIC
3R	17947455	3R_17947455_SNP [dm3] 3R_22121733_SNP [dm6]	C	A	1.975e^-4	0.994	INTRON CG42390
3R	19626223	3R_19626223_SNP [dm3] 3R_23800501_SNP [dm6]	T	G	1.978e^-4	0.994	SYNONYMOUS_CODING mbc
2R	8937312	2R_8937312_SNP [dm3] 2R_13049807_SNP [dm6]	G	A	1.980e^-4	0.994	UPSTREAM CG13324 INTERGENIC
3R	24897445	3R_24897445_SNP [dm3] 3R_29071723_SNP [dm6]	C	A	1.981e^-4	0.994	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3R	11498096	3R_11498096_SNP [dm3] 3R_15672374_SNP [dm6]	A	G	1.985e^-4	0.994	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	8514725	2L_8514725_SNP [dm3] 2L_8514725_SNP [dm6]	C	T	2.000e^-4	0.994	SYNONYMOUS_CODING CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4107654	3L_4107654_SNP [dm3] 3L_4107654_SNP [dm6]	C	A	2.000e^-4	0.994	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16223523	2L_16223523_SNP [dm3] 2L_16223523_SNP [dm6]	T	C	2.003e^-4	0.994	INTERGENIC
2R	14281103	2R_14281103_SNP [dm3] 2R_18393598_SNP [dm6]	C	T	2.019e^-4	0.994	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5667932	2L_5667932_SNP [dm3] 2L_5667932_SNP [dm6]	C	A	2.028e^-4	0.994	INTRON Hsp60C
3L	7903120	3L_7903120_SNP [dm3] 3L_7910020_SNP [dm6]	T	A	2.034e^-4	0.994	UPSTREAM pbl INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10933175	X_10933175_SNP [dm3] X_11039142_SNP [dm6]	T	A	2.037e^-4	0.994	INTRON CG42339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	15909692	3R_15909692_SNP [dm3] 3R_20083970_SNP [dm6]	A	T	2.047e^-4	0.994	INTERGENIC
3L	8810663	3L_8810663_SNP [dm3] 3L_8817563_SNP [dm6]	G	T	2.048e^-4	0.994	INTERGENIC
3L	4674742	3L_4674742_SNP [dm3] 3L_4674742_SNP [dm6]	A	C	2.060e^-4	0.994	INTRON axo	TF binding site mE1_TFBS_inv
3L	12066979	3L_12066979_SNP [dm3] 3L_12073879_SNP [dm6]	G	A	2.067e^-4	0.994	INTRON Sema-5c
3L	23232397	3L_23232397_SNP [dm3] 3L_23239297_SNP [dm6]	C	T	2.068e^-4	0.994	INTRON nAChRalpha4
3L	13165349	3L_13165349_SNP [dm3] 3L_13172249_SNP [dm6]	C	T	2.073e^-4	0.994	INTERGENIC
3L	6429390	3L_6429390_SNP [dm3] 3L_6436290_SNP [dm6]	T	C	2.074e^-4	0.994	INTRON CG42747	TF binding site mE1_TFBS_cad
3L	13165170	3L_13165170_SNP [dm3] 3L_13172070_SNP [dm6]	C	A	2.084e^-4	0.994	INTERGENIC
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	2.091e^-4	0.994	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2L	10345609	2L_10345609_SNP [dm3] 2L_10345609_SNP [dm6]	C	G	2.106e^-4	0.994	INTRON CG5022
2L	5678943	2L_5678943_SNP [dm3] 2L_5678943_SNP [dm6]	G	A	2.111e^-4	0.994	SYNONYMOUS_CODING CG12511
2R	12080336	2R_12080336_SNP [dm3] 2R_16192831_SNP [dm6]	C	T	2.113e^-4	0.994	INTRON clu	TF binding site mE1_TFBS_cad
3R	22889706	3R_22889706_SNP [dm3] 3R_27063984_SNP [dm6]	A	G	2.119e^-4	0.994	UTR_5_PRIME Nep5 UPSTREAM Nep5 DOWNSTREAM CG34292	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5047282	X_5047282_SNP [dm3] X_5153249_SNP [dm6]	G	A	2.122e^-4	0.994	INTRON rg & 1 other
X	8292927	X_8292927_SNP [dm3] X_8398894_SNP [dm6]	T	C	2.125e^-4	0.994	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7726928	3L_7726928_SNP [dm3] 3L_7733828_SNP [dm6]	A	T	2.127e^-4	0.994	INTRON CG32373 & 1 other
3L	10828879	3L_10828879_SNP [dm3] 3L_10835779_SNP [dm6]	A	T	2.130e^-4	0.994	INTERGENIC
2L	16222467	2L_16222467_SNP [dm3] 2L_16222467_SNP [dm6]	A	T	2.136e^-4	0.994	INTERGENIC
2R	9109903	2R_9109903_SNP [dm3] 2R_13222398_SNP [dm6]	T	C	2.137e^-4	0.994	UTR_5_PRIME Fsn UPSTREAM Dp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	10452433	2L_10452433_SNP [dm3] 2L_10452433_SNP [dm6]	C	A	2.139e^-4	0.994	UPSTREAM ppk10 DOWNSTREAM CG5322 INTERGENIC
3R	20538590	3R_20538590_SNP [dm3] 3R_24712868_SNP [dm6]	C	T	2.141e^-4	0.994	UTR_5_PRIME CG13627
3R	18911724	3R_18911724_SNP [dm3] 3R_23086002_SNP [dm6]	A	G	2.148e^-4	0.994	INTRON CG13830	TF binding site mE1_TFBS_sbb
X	4385538	X_4385538_SNP [dm3] X_4491505_SNP [dm6]	T	G	2.164e^-4	0.994	INTRON CR32773	TF binding site BDTNP1_TFBS_prd
3L	12482270	3L_12482270_SNP [dm3] 3L_12489170_SNP [dm6]	G	A	2.176e^-4	0.994	INTRON CG10660
2L	1377385	2L_1377385_SNP [dm3] 2L_1377385_SNP [dm6]	C	T	2.177e^-4	0.994	INTERGENIC
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	2.184e^-4	0.994	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2R	15430459	2R_15430459_SNP [dm3] 2R_19542954_SNP [dm6]	C	T	2.190e^-4	0.994	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4263909	3R_4263909_SNP [dm3] 3R_8438187_SNP [dm6]	T	A	2.194e^-4	0.994	INTRON CG45263
3R	3373354	3R_3373354_SNP [dm3] 3R_7547632_SNP [dm6]	A	T	2.196e^-4	0.994	INTRON alpha-Est1
2L	15216775	2L_15216775_SNP [dm3] 2L_15216775_SNP [dm6]	A	T	2.201e^-4	0.994	DOWNSTREAM CG43230 INTERGENIC
2L	17673649	2L_17673649_SNP [dm3] 2L_17673649_SNP [dm6]	C	T	2.204e^-4	0.994	INTRON CadN
X	11907158	X_11907158_SNP [dm3] X_12013125_SNP [dm6]	G	C	2.214e^-4	0.994	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26097680	3R_26097680_SNP [dm3] 3R_30271958_SNP [dm6]	G	A	2.219e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15714047	2R_15714047_SNP [dm3] 2R_19826542_SNP [dm6]	G	T	2.225e^-4	0.994	UPSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	13635373	X_13635373_SNP [dm3] X_13741340_SNP [dm6]	G	T	2.230e^-4	0.994	DOWNSTREAM CG11151 INTRON Grip91 & 1 other
3L	8875162	3L_8875162_SNP [dm3] 3L_8882062_SNP [dm6]	T	C	2.235e^-4	0.994	INTRON dally
2R	9888252	2R_9888252_SNP [dm3] 2R_14000747_SNP [dm6]	G	C	2.237e^-4	0.994	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16508678	3L_16508678_SNP [dm3] 3L_16515578_SNP [dm6]	G	A	2.239e^-4	0.994	INTRON CG43373	insulator Insulator_Class_II.mE01
2L	13719463	2L_13719463_SNP [dm3] 2L_13719463_SNP [dm6]	C	G	2.239e^-4	0.994	INTERGENIC
2R	7352831	2R_7352831_SNP [dm3] 2R_11465326_SNP [dm6]	T	C	2.241e^-4	0.994	DOWNSTREAM E_Pc_ INTERGENIC
3R	6577733	3R_6577733_DEL [dm3] 3R_10752011_DEL [dm6]	CC	C	2.242e^-4	0.994	UPSTREAM TkR86C INTERGENIC	regulatory region REDfly_CRMs
2L	9832098	2L_9832098_SNP [dm3] 2L_9832098_SNP [dm6]	G	A	2.244e^-4	0.994	INTRON nAChRalpha6
3R	25902764	3R_25902764_SNP [dm3] 3R_30077042_SNP [dm6]	A	G	2.249e^-4	0.994	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	16965651	2L_16965651_SNP [dm3] 2L_16965651_SNP [dm6]	A	G	2.251e^-4	0.994	EXON CR45285
3L	9843986	3L_9843986_SNP [dm3] 3L_9850886_SNP [dm6]	T	A	2.253e^-4	0.994	INTRON RasGAP1	TF binding site mE1_TFBS_cad
X	14858714	X_14858714_SNP [dm3] X_14964681_SNP [dm6]	A	T	2.260e^-4	0.994	INTRON eag
X	11536416	X_11536416_SNP [dm3] X_11642383_SNP [dm6]	A	G	2.265e^-4	0.994	INTRON Ptp10D
3R	18921094	3R_18921094_SNP [dm3] 3R_23095372_SNP [dm6]	C	G	2.266e^-4	0.994	UTR_3_PRIME CG17110 UPSTREAM CG17109 DOWNSTREAM CG17110 & 1 other INTRON CG13830	TF binding site mE1_TFBS_inv
3L	9136367	3L_9136367_SNP [dm3] 3L_9143267_SNP [dm6]	C	T	2.274e^-4	0.994	UTR_3_PRIME nwk INTRON nwk
2L	12716419	2L_12716419_SNP [dm3] 2L_12716419_SNP [dm6]	C	G	2.283e^-4	0.994	NON_SYNONYMOUS_CODING CG5792 INTRON CG5792	TF binding site mE1_TFBS_sens
2R	9514655	2R_9514655_SNP [dm3] 2R_13627150_SNP [dm6]	C	A	2.291e^-4	0.994	INTRON fas
3L	10365156	3L_10365156_SNP [dm3] 3L_10372056_SNP [dm6]	T	A	2.297e^-4	0.994	INTERGENIC
X	4251590	X_4251590_SNP [dm3] X_4357557_SNP [dm6]	A	G	2.297e^-4	0.994	INTRON norpA
X	11907091	X_11907091_SNP [dm3] X_12013058_SNP [dm6]	T	C	2.299e^-4	0.994	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3263189	2L_3263189_SNP [dm3] 2L_3263189_SNP [dm6]	T	C	2.306e^-4	0.994	DOWNSTREAM CR45706 INTERGENIC
3R	1789960	3R_1789960_SNP [dm3] 3R_5964238_SNP [dm6]	T	G	2.317e^-4	0.994	INTERGENIC
2L	3418251	2L_3418251_SNP [dm3] 2L_3418251_SNP [dm6]	A	G	2.326e^-4	0.994	DOWNSTREAM CG31952 INTRON pgant2
2L	1541783	2L_1541783_SNP [dm3] 2L_1541783_SNP [dm6]	G	T	2.330e^-4	0.994	INTERGENIC
X	14473314	X_14473314_SNP [dm3] X_14579281_SNP [dm6]	G	A	2.330e^-4	0.994	INTERGENIC
3L	11039540	3L_11039540_SNP [dm3] 3L_11046440_SNP [dm6]	T	C	2.334e^-4	0.994	UTR_5_PRIME CG43693 INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23313801	3R_23313801_SNP [dm3] 3R_27488079_SNP [dm6]	T	C	2.336e^-4	0.994	UTR_5_PRIME Gr98a
X	14473334	X_14473334_SNP [dm3] X_14579301_SNP [dm6]	T	A	2.343e^-4	0.994	INTERGENIC
2L	1507625	2L_1507625_SNP [dm3] 2L_1507625_SNP [dm6]	T	A	2.351e^-4	0.994	INTERGENIC
3L	9220360	3L_9220360_SNP [dm3] 3L_9227260_SNP [dm6]	C	G	2.358e^-4	0.994	INTERGENIC
X	22232373	X_22232373_SNP [dm3] X_22830537_SNP [dm6]	T	C	2.373e^-4	0.994	INTRON fog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
X	11904502	X_11904502_SNP [dm3] X_12010469_SNP [dm6]	G	A	2.380e^-4	0.994	SYNONYMOUS_CODING CG1492 DOWNSTREAM CG1806
2R	8897324	2R_8897324_SNP [dm3] 2R_13009819_SNP [dm6]	C	T	2.381e^-4	0.994	INTERGENIC
2R	10291896	2R_10291896_SNP [dm3] 2R_14404391_SNP [dm6]	A	T	2.389e^-4	0.994	INTERGENIC
2R	13016392	2R_13016392_SNP [dm3] 2R_17128887_SNP [dm6]	A	G	2.391e^-4	0.994	NON_SYNONYMOUS_CODING Cda9
2L	8510992	2L_8510992_SNP [dm3] 2L_8510992_SNP [dm6]	G	T	2.392e^-4	0.994	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16647645	3R_16647645_SNP [dm3] 3R_20821923_SNP [dm6]	C	A	2.402e^-4	0.994	UPSTREAM RpS20 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	23145668	3R_23145668_SNP [dm3] 3R_27319946_SNP [dm6]	C	T	2.404e^-4	0.994	SYNONYMOUS_CODING CG3339 DOWNSTREAM CR44287	TF binding site mE1_TFBS_chinmo
2R	1082266	2R_1082266_DEL [dm3] 2R_5194761_DEL [dm6]	TGGCCATATTGGCTCGGCTA...	T	2.408e^-4	0.994	INTRON Nipped-A	transposable element FlyBase
2L	3044732	2L_3044732_SNP [dm3] 2L_3044732_SNP [dm6]	G	A	2.408e^-4	0.994	INTRON v_2_k05816
3R	5950537	3R_5950537_SNP [dm3] 3R_10124815_SNP [dm6]	A	C	2.410e^-4	0.994	INTRON knk
3L	11041819	3L_11041819_SNP [dm3] 3L_11048719_SNP [dm6]	T	A	2.417e^-4	0.994	INTRON CG43693
3L	18321005	3L_18321005_SNP [dm3] 3L_18327905_SNP [dm6]	C	T	2.420e^-4	0.994	INTERGENIC
X	21901344	X_21901344_SNP [dm3] X_22499508_SNP [dm6]	C	A	2.435e^-4	0.994	DOWNSTREAM l_1_G0196 INTRON l_1_G0196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14852193	X_14852193_SNP [dm3] X_14958160_SNP [dm6]	T	G	2.437e^-4	0.994	INTRON eag
2L	12702007	2L_12702007_SNP [dm3] 2L_12702007_SNP [dm6]	T	C	2.446e^-4	0.994	SYNONYMOUS_CODING CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	8226635	3R_8226635_SNP [dm3] 3R_12400913_SNP [dm6]	T	C	2.449e^-4	0.994	SYNONYMOUS_CODING lig3 INTRON CG34402	TF binding site mE1_TFBS_sens
X	11320410	X_11320410_SNP [dm3] X_11426377_SNP [dm6]	A	C	2.456e^-4	0.994	INTRON Gs2
2L	12303645	2L_12303645_SNP [dm3] 2L_12303645_SNP [dm6]	T	A	2.461e^-4	0.994	INTRON aret
2L	8742962	2L_8742962_SNP [dm3] 2L_8742962_SNP [dm6]	T	C	2.468e^-4	0.994	INTERGENIC
2R	989751	2R_989751_SNP [dm3] 2R_5102246_SNP [dm6]	G	A	2.475e^-4	0.994	INTERGENIC	transposable element FlyBase
2R	16439505	2R_16439505_SNP [dm3] 2R_20552000_SNP [dm6]	A	T	2.482e^-4	0.994	UTR_5_PRIME CG13430 & 1 other UPSTREAM CG13430	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13719464	2L_13719464_SNP [dm3] 2L_13719464_SNP [dm6]	T	A	2.492e^-4	0.994	INTERGENIC
3L	9136363	3L_9136363_SNP [dm3] 3L_9143263_SNP [dm6]	A	C	2.502e^-4	0.994	UTR_3_PRIME nwk INTRON nwk
X	3430452	X_3430452_SNP [dm3] X_3536419_SNP [dm6]	G	A	2.510e^-4	0.994	INTRON CG32791
2R	19194274	2R_19194274_SNP [dm3] 2R_23306751_SNP [dm6]	A	C	2.516e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2455359	3R_2455359_SNP [dm3] 3R_6629637_SNP [dm6]	T	G	2.531e^-4	0.994	UPSTREAM sunz & 1 other INTERGENIC
3R	23851063	3R_23851063_SNP [dm3] 3R_28025341_SNP [dm6]	G	T	2.533e^-4	0.994	INTERGENIC
3L	5776083	3L_5776083_SNP [dm3] 3L_5782983_SNP [dm6]	C	G	2.550e^-4	0.994	NON_SYNONYMOUS_CODING PGRP-LD UTR_3_PRIME Pmi DOWNSTREAM Cralbp	TF binding site mE1_TFBS_cad
3R	12673220	3R_12673220_SNP [dm3] 3R_16847498_SNP [dm6]	A	C	2.550e^-4	0.994	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	17610556	3R_17610556_SNP [dm3] 3R_21784834_SNP [dm6]	G	T	2.550e^-4	0.994	UTR_3_PRIME CASK DOWNSTREAM CASK EXON CRG	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7339064	2L_7339064_INS [dm3] 2L_7339064_INS [dm6]	A	AT	2.551e^-4	0.994	INTRON Wnt6
2L	9439232	2L_9439232_SNP [dm3] 2L_9439232_SNP [dm6]	G	A	2.554e^-4	0.994	DOWNSTREAM CG33723 INTRON numb
X	14852821	X_14852821_SNP [dm3] X_14958788_SNP [dm6]	T	G	2.555e^-4	0.994	INTRON eag	TF binding site mE1_TFBS_bab1
3L	12066968	3L_12066968_SNP [dm3] 3L_12073868_SNP [dm6]	G	C	2.561e^-4	0.994	INTRON Sema-5c
2R	12755534	2R_12755534_SNP [dm3] 2R_16868029_SNP [dm6]	G	T	2.564e^-4	0.994	UPSTREAM Ef1beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6702213	2L_6702213_SNP [dm3] 2L_6702213_SNP [dm6]	C	T	2.576e^-4	0.994	INTRON Tsp
2L	16843924	2L_16843924_SNP [dm3] 2L_16843924_SNP [dm6]	A	G	2.581e^-4	0.994	SYNONYMOUS_CODING CG13284
X	21976492	X_21976492_SNP [dm3] X_22574656_SNP [dm6]	A	C	2.584e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
X	2277485	X_2277485_SNP [dm3] X_2383452_SNP [dm6]	G	A	2.584e^-4	0.994	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18586563	3R_18586563_SNP [dm3] 3R_22760841_SNP [dm6]	A	G	2.591e^-4	0.994	SYNONYMOUS_CODING CG4725 DOWNSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18692178	3L_18692178_SNP [dm3] 3L_18699078_SNP [dm6]	A	G	2.594e^-4	0.994	UPSTREAM Dic4 INTERGENIC
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	2.595e^-4	0.994	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23881991	3R_23881991_SNP [dm3] 3R_28056269_SNP [dm6]	C	T	2.596e^-4	0.994	INTRON CG34362
2L	20767789	2L_20767789_SNP [dm3] 2L_20767789_SNP [dm6]	G	T	2.601e^-4	0.994	UTR_3_PRIME dia DOWNSTREAM dia	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10365171	3L_10365171_SNP [dm3] 3L_10372071_SNP [dm6]	A	T	2.619e^-4	0.994	INTERGENIC
2R	4646477	2R_4646477_INS [dm3] 2R_8758972_INS [dm6]	C	CAC	2.620e^-4	0.994	INTRON CG8740	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	16792964	2R_16792964_SNP [dm3] 2R_20905459_SNP [dm6]	T	G	2.637e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7604878	3L_7604878_DEL [dm3] 3L_7611778_DEL [dm6]	ACGTTGA	A	2.639e^-4	0.994	INTRON CG33275
2L	18107021	2L_18107021_SNP [dm3] 2L_18107021_SNP [dm6]	T	C	2.641e^-4	0.994	INTERGENIC
3L	9788347	3L_9788347_SNP [dm3] 3L_9795247_SNP [dm6]	T	C	2.643e^-4	0.994	INTRON Zasp67
2R	11381827	2R_11381827_SNP [dm3] 2R_15494322_SNP [dm6]	A	T	2.649e^-4	0.994	INTRON CG12964
3L	1239806	3L_1239806_INS [dm3] 3L_1239806_INS [dm6]	T	TGTAT	2.649e^-4	0.994	INTRON CG9194	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	14332248	3L_14332248_SNP [dm3] 3L_14339148_SNP [dm6]	C	T	2.652e^-4	0.994	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7597793	3L_7597793_SNP [dm3] 3L_7604693_SNP [dm6]	T	G	2.658e^-4	0.994	UPSTREAM CG33275 INTRON CG33275
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	2.659e^-4	0.994	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14056983	2R_14056983_SNP [dm3] 2R_18169478_SNP [dm6]	T	A	2.659e^-4	0.994	SYNONYMOUS_CODING Dgp-1	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16376228	2R_16376228_SNP [dm3] 2R_20488723_SNP [dm6]	T	C	2.660e^-4	0.994	INTERGENIC
X	13444507	X_13444507_SNP [dm3] X_13550474_SNP [dm6]	A	G	2.664e^-4	0.994	INTERGENIC
2R	8690070	2R_8690070_SNP [dm3] 2R_12802565_SNP [dm6]	T	G	2.664e^-4	0.994	DOWNSTREAM sca INTERGENIC
3R	20288247	3R_20288247_SNP [dm3] 3R_24462525_SNP [dm6]	C	T	2.665e^-4	0.994	INTERGENIC
2R	1027532	2R_1027532_SNP [dm3] 2R_5140027_SNP [dm6]	T	C	2.694e^-4	0.994	INTERGENIC
2L	17243314	2L_17243314_SNP [dm3] 2L_17243314_SNP [dm6]	G	A	2.700e^-4	0.994	INTRON beat-IIIc
X	11907047	X_11907047_SNP [dm3] X_12013014_SNP [dm6]	G	T	2.704e^-4	0.994	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8574099	2R_8574099_SNP [dm3] 2R_12686594_SNP [dm6]	A	G	2.709e^-4	0.994	UPSTREAM CG13148 & 1 other INTRON CG13148	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5356960	X_5356960_SNP [dm3] X_5462927_SNP [dm6]	T	C	2.712e^-4	0.994	INTRON SPR
2L	946545	2L_946545_SNP [dm3] 2L_946545_SNP [dm6]	C	A	2.714e^-4	0.994	INTRON CG4341
3R	25802117	3R_25802117_SNP [dm3] 3R_29976395_SNP [dm6]	C	T	2.718e^-4	0.994	INTERGENIC
3L	23310255	3L_23310255_SNP [dm3] 3L_23317155_SNP [dm6]	A	G	2.723e^-4	0.994	INTERGENIC	transposable element FlyBase
2R	11386464	2R_11386464_SNP [dm3] 2R_15498959_SNP [dm6]	A	T	2.723e^-4	0.994	UPSTREAM Ir52a INTERGENIC
X	14854409	X_14854409_SNP [dm3] X_14960376_SNP [dm6]	A	C	2.725e^-4	0.994	INTRON eag	TF binding site mE1_TFBS_bab1
3L	18691141	3L_18691141_SNP [dm3] 3L_18698041_SNP [dm6]	A	T	2.727e^-4	0.994	INTRON Dic4
3L	6428366	3L_6428366_SNP [dm3] 3L_6435266_SNP [dm6]	A	G	2.729e^-4	0.994	INTRON CG42747	TF binding site mE1_TFBS_cad
2R	1031474	2R_1031474_SNP [dm3] 2R_5143969_SNP [dm6]	C	G	2.733e^-4	0.994	UPSTREAM Atf6 INTERGENIC	transposable element FlyBase
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	2.747e^-4	0.994	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25524800	3R_25524800_SNP [dm3] 3R_29699078_SNP [dm6]	C	T	2.747e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11512336	2R_11512336_SNP [dm3] 2R_15624831_SNP [dm6]	T	G	2.754e^-4	0.994	INTRON CG42524
2R	2798479	2R_2798479_SNP [dm3] 2R_6910974_SNP [dm6]	G	A	2.764e^-4	0.994	INTRON CG30158
X	4385494	X_4385494_SNP [dm3] X_4491461_SNP [dm6]	C	A	2.773e^-4	0.994	INTRON CR32773	TF binding site BDTNP1_TFBS_prd
2L	10014521	2L_10014521_SNP [dm3] 2L_10014521_SNP [dm6]	A	G	2.776e^-4	0.994	SYNONYMOUS_CODING CG13131
3R	2301528	3R_2301528_SNP [dm3] 3R_6475806_SNP [dm6]	A	G	2.790e^-4	0.994	INTERGENIC
2L	12492990	2L_12492990_SNP [dm3] 2L_12492990_SNP [dm6]	C	T	2.791e^-4	0.994	UPSTREAM bun INTRON bun
X	5020620	X_5020620_SNP [dm3] X_5126587_SNP [dm6]	G	T	2.793e^-4	0.994	INTRON rg & 1 other
2R	14571741	2R_14571741_SNP [dm3] 2R_18684236_SNP [dm6]	G	A	2.803e^-4	0.994	UTR_3_PRIME CG44433 UPSTREAM CG44434 & 1 other
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	2.808e^-4	0.994	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	3424535	2L_3424535_SNP [dm3] 2L_3424535_SNP [dm6]	T	C	2.814e^-4	0.994	INTRON pgant2
2L	15635012	2L_15635012_SNP [dm3] 2L_15635012_SNP [dm6]	G	A	2.821e^-4	0.994	DOWNSTREAM CG18480 INTERGENIC
X	4376053	X_4376053_INS [dm3] X_4482020_INS [dm6]	A	ATTGATAAAAATAAAAAAAG...	2.823e^-4	0.994	INTRON CR32773 & 1 other
2L	1387868	2L_1387868_SNP [dm3] 2L_1387868_SNP [dm6]	G	C	2.827e^-4	0.994	INTRON lea
3R	11424928	3R_11424928_SNP [dm3] 3R_15599206_SNP [dm6]	A	C	2.828e^-4	0.994	INTERGENIC
X	15495938	X_15495938_SNP [dm3] X_15601905_SNP [dm6]	T	C	2.835e^-4	0.994	INTERGENIC
3R	25204559	3R_25204559_SNP [dm3] 3R_29378837_SNP [dm6]	T	C	2.836e^-4	0.994	INTRON Ptp99A
2R	7438359	2R_7438359_SNP [dm3] 2R_11550854_SNP [dm6]	C	T	2.841e^-4	0.994	INTERGENIC
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	2.844e^-4	0.994	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	2.859e^-4	0.994	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	13720092	2L_13720092_SNP [dm3] 2L_13720092_SNP [dm6]	A	G	2.860e^-4	0.994	INTERGENIC
2L	18041126	2L_18041126_SNP [dm3] 2L_18041126_SNP [dm6]	A	C	2.864e^-4	0.994	INTRON rdo
3R	25524929	3R_25524929_SNP [dm3] 3R_29699207_SNP [dm6]	C	T	2.864e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7560879	3L_7560879_SNP [dm3] 3L_7567779_SNP [dm6]	T	G	2.864e^-4	0.994	INTRON frac
2L	20055178	2L_20055178_SNP [dm3] 2L_20055178_SNP [dm6]	T	C	2.866e^-4	0.994	SPLICE_SITE_REGION sNPF SYNONYMOUS_CODING sNPF
2L	12478968	2L_12478968_SNP [dm3] 2L_12478968_SNP [dm6]	C	T	2.868e^-4	0.994	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8515314	2L_8515314_SNP [dm3] 2L_8515314_SNP [dm6]	A	C	2.870e^-4	0.994	UPSTREAM CG13097 INTRON PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12163798	3L_12163798_SNP [dm3] 3L_12170698_SNP [dm6]	A	G	2.891e^-4	0.994	INTRON Rh7
2L	1528253	2L_1528253_SNP [dm3] 2L_1528253_SNP [dm6]	G	A	2.894e^-4	0.994	INTERGENIC
X	8716544	X_8716544_SNP [dm3] X_8822511_SNP [dm6]	G	A	2.896e^-4	0.994	INTERGENIC
X	14852151	X_14852151_SNP [dm3] X_14958118_SNP [dm6]	T	A	2.905e^-4	0.994	INTRON eag
2L	19807370	2L_19807370_SNP [dm3] 2L_19807370_SNP [dm6]	C	A	2.914e^-4	0.994	UTR_5_PRIME sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18708343	2R_18708343_SNP [dm3] 2R_22820838_SNP [dm6]	G	C	2.917e^-4	0.994	UPSTREAM CG42284 INTRON CG30271	TF binding site mE1_TFBS_chinmo
3R	22758941	3R_22758941_SNP [dm3] 3R_26933219_SNP [dm6]	G	A	2.917e^-4	0.994	INTRON sda
2L	18050584	2L_18050584_SNP [dm3] 2L_18050584_SNP [dm6]	G	T	2.918e^-4	0.994	INTRON rdo
2R	12253035	2R_12253035_SNP [dm3] 2R_16365530_SNP [dm6]	A	C	2.939e^-4	0.994	UTR_5_PRIME CG15711	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22917655	3R_22917655_SNP [dm3] 3R_27091933_SNP [dm6]	T	A	2.941e^-4	0.994	UPSTREAM Cpr97Eb INTERGENIC
3R	26097655	3R_26097655_SNP [dm3] 3R_30271933_SNP [dm6]	A	T	2.964e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16647366	3R_16647366_SNP [dm3] 3R_20821644_SNP [dm6]	G	A	2.964e^-4	0.994	NON_SYNONYMOUS_CODING CG17271 UPSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	1024243	2R_1024243_SNP [dm3] 2R_5136738_SNP [dm6]	C	A	2.972e^-4	0.994	INTERGENIC	transposable element FlyBase
2L	3210619	2L_3210619_SNP [dm3] 2L_3210619_SNP [dm6]	A	T	2.976e^-4	0.994	EXON CR45336
3R	1046605	3R_1046605_SNP [dm3] 3R_5220883_SNP [dm6]	G	A	2.977e^-4	0.994	NON_SYNONYMOUS_CODING CG1116 DOWNSTREAM CG2604	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15659499	2R_15659499_SNP [dm3] 2R_19771994_SNP [dm6]	G	A	2.988e^-4	0.994	UPSTREAM Or56a INTERGENIC
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	3.009e^-4	0.994	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14858726	X_14858726_SNP [dm3] X_14964693_SNP [dm6]	C	T	3.011e^-4	0.994	INTRON eag
X	14852158	X_14852158_SNP [dm3] X_14958125_SNP [dm6]	C	A	3.017e^-4	0.994	INTRON eag
3L	4674836	3L_4674836_SNP [dm3] 3L_4674836_SNP [dm6]	G	T	3.019e^-4	0.994	INTRON axo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1036711	2R_1036711_SNP [dm3] 2R_5149206_SNP [dm6]	T	C	3.032e^-4	0.994	INTRON Atf6
2R	5780076	2R_5780076_SNP [dm3] 2R_9892571_SNP [dm6]	A	G	3.032e^-4	0.994	UPSTREAM CG1513 INTRON CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	3.033e^-4	0.994	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1018870	2R_1018870_SNP [dm3] 2R_5131365_SNP [dm6]	C	T	3.041e^-4	0.994	INTERGENIC	transposable element FlyBase
3R	3374240	3R_3374240_SNP [dm3] 3R_7548518_SNP [dm6]	A	T	3.055e^-4	0.994	INTRON alpha-Est1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5366385	X_5366385_SNP [dm3] X_5472352_SNP [dm6]	G	A	3.056e^-4	0.994	INTRON SPR
3R	13467805	3R_13467805_SNP [dm3] 3R_17642083_SNP [dm6]	G	T	3.062e^-4	0.994	INTRON CG43175
2R	1024229	2R_1024229_SNP [dm3] 2R_5136724_SNP [dm6]	C	T	3.065e^-4	0.994	INTERGENIC	transposable element FlyBase
2L	12492989	2L_12492989_SNP [dm3] 2L_12492989_SNP [dm6]	C	A	3.081e^-4	0.994	UPSTREAM bun INTRON bun
2L	3528932	2L_3528932_SNP [dm3] 2L_3528932_SNP [dm6]	T	A	3.083e^-4	0.994	INTRON Spindly
2L	16506996	2L_16506996_SNP [dm3] 2L_16506996_SNP [dm6]	A	T	3.088e^-4	0.994	SYNONYMOUS_CODING Tpr2	TF binding site mE1_TFBS_cad
X	13657837	X_13657837_SNP [dm3] X_13763804_SNP [dm6]	T	C	3.099e^-4	0.994	INTRON rdgB	TF binding site BDTNP1_TFBS_dl
2R	5783798	2R_5783798_SNP [dm3] 2R_9896293_SNP [dm6]	G	T	3.103e^-4	0.994	NON_SYNONYMOUS_CODING CG30007
2R	9509425	2R_9509425_DEL [dm3] 2R_13621920_DEL [dm6]	ATATG	A	3.107e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14914361	3R_14914361_SNP [dm3] 3R_19088639_SNP [dm6]	G	A	3.107e^-4	0.994	INTRON cdi
3L	5461333	3L_5461333_SNP [dm3] 3L_5468233_SNP [dm6]	T	C	3.112e^-4	0.994	INTERGENIC
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	3.115e^-4	0.994	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1527433	2L_1527433_SNP [dm3] 2L_1527433_SNP [dm6]	T	C	3.125e^-4	0.994	INTERGENIC
3R	11496184	3R_11496184_SNP [dm3] 3R_15670462_SNP [dm6]	G	A	3.134e^-4	0.994	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5763531	2R_5763531_SNP [dm3] 2R_9876026_SNP [dm6]	C	T	3.135e^-4	0.994	SYNONYMOUS_CODING CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22720457	3R_22720457_SNP [dm3] 3R_26894735_SNP [dm6]	T	C	3.143e^-4	0.994	INTRON T48	regulatory region REDfly_CRMs
X	5047289	X_5047289_SNP [dm3] X_5153256_SNP [dm6]	T	C	3.153e^-4	0.994	INTRON rg & 1 other
X	11907049	X_11907049_SNP [dm3] X_12013016_SNP [dm6]	A	T	3.159e^-4	0.994	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	2785945	2R_2785945_SNP [dm3] 2R_6898440_SNP [dm6]	A	G	3.159e^-4	0.994	INTRON CG30158	TF binding site mE1_TFBS_chinmo
2L	12479053	2L_12479053_SNP [dm3] 2L_12479053_SNP [dm6]	G	A	3.161e^-4	0.994	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12479063	2L_12479063_SNP [dm3] 2L_12479063_SNP [dm6]	T	C	3.161e^-4	0.994	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4674580	3L_4674580_SNP [dm3] 3L_4674580_SNP [dm6]	G	A	3.167e^-4	0.994	INTRON axo	TF binding site mE1_TFBS_inv
3L	7604946	3L_7604946_INS [dm3] 3L_7611846_INS [dm6]	T	TT	3.175e^-4	0.994	INTRON CG33275
3L	18205542	3L_18205542_SNP [dm3] 3L_18212442_SNP [dm6]	C	T	3.176e^-4	0.994	INTERGENIC
2R	14281109	2R_14281109_SNP [dm3] 2R_18393604_SNP [dm6]	A	G	3.204e^-4	0.994	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20936787	3R_20936787_SNP [dm3] 3R_25111065_SNP [dm6]	C	A	3.208e^-4	0.994	SPLICE_SITE_REGION CG13650 INTRON CG13650
3L	1254840	3L_1254840_SNP [dm3] 3L_1254840_SNP [dm6]	C	A	3.214e^-4	0.994	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	14473318	X_14473318_SNP [dm3] X_14579285_SNP [dm6]	T	G	3.225e^-4	0.994	INTERGENIC
2R	1024810	2R_1024810_SNP [dm3] 2R_5137305_SNP [dm6]	A	T	3.228e^-4	0.994	INTERGENIC	transposable element FlyBase
3R	26164123	3R_26164123_SNP [dm3] 3R_30338401_SNP [dm6]	T	G	3.237e^-4	0.994	INTRON hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11381826	2R_11381826_SNP [dm3] 2R_15494321_SNP [dm6]	C	A	3.238e^-4	0.994	INTRON CG12964
3L	20278899	3L_20278899_SNP [dm3] 3L_20285799_SNP [dm6]	C	T	3.243e^-4	0.994	INTRON gogo
2L	9868904	2L_9868904_SNP [dm3] 2L_9868904_SNP [dm6]	A	G	3.244e^-4	0.994	INTRON nAChRalpha6
3L	19145936	3L_19145936_SNP [dm3] 3L_19152836_SNP [dm6]	C	A	3.251e^-4	0.994	INTRON fz2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	8409015	3R_8409015_SNP [dm3] 3R_12583293_SNP [dm6]	T	G	3.252e^-4	0.994	INTRON Octbeta2R
2L	10014407	2L_10014407_SNP [dm3] 2L_10014407_SNP [dm6]	A	C	3.252e^-4	0.994	NON_SYNONYMOUS_CODING CG13131
3R	2457466	3R_2457466_SNP [dm3] 3R_6631744_SNP [dm6]	C	T	3.253e^-4	0.994	DOWNSTREAM sunz INTERGENIC
X	5959751	X_5959751_SNP [dm3] X_6065718_SNP [dm6]	C	G	3.254e^-4	0.994	DOWNSTREAM CG43115 & 1 other INTERGENIC
3L	8656906	3L_8656906_SNP [dm3] 3L_8663806_SNP [dm6]	C	A	3.256e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8503788	2L_8503788_SNP [dm3] 2L_8503788_SNP [dm6]	A	G	3.256e^-4	0.994	INTRON Dh31
2L	8503798	2L_8503798_SNP [dm3] 2L_8503798_SNP [dm6]	A	G	3.256e^-4	0.994	INTRON Dh31
3L	9251831	3L_9251831_SNP [dm3] 3L_9258731_SNP [dm6]	C	T	3.261e^-4	0.994	INTRON GluRIB	TF binding site mE1_TFBS_HSA
X	14862118	X_14862118_SNP [dm3] X_14968085_SNP [dm6]	A	T	3.262e^-4	0.994	INTRON eag
2L	10014419	2L_10014419_SNP [dm3] 2L_10014419_SNP [dm6]	T	C	3.274e^-4	0.994	SYNONYMOUS_CODING CG13131
2R	9513697	2R_9513697_SNP [dm3] 2R_13626192_SNP [dm6]	G	A	3.280e^-4	0.994	INTRON fas
3L	12722162	3L_12722162_SNP [dm3] 3L_12729062_SNP [dm6]	T	C	3.282e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26097653	3R_26097653_SNP [dm3] 3R_30271931_SNP [dm6]	A	T	3.287e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	14852169	X_14852169_SNP [dm3] X_14958136_SNP [dm6]	C	T	3.294e^-4	0.994	INTRON eag
2R	15929710	2R_15929710_SNP [dm3] 2R_20042205_SNP [dm6]	G	T	3.309e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9122007	2R_9122007_SNP [dm3] 2R_13234502_SNP [dm6]	A	G	3.312e^-4	0.994	SYNONYMOUS_CODING CG4670	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4683781	2L_4683781_SNP [dm3] 2L_4683781_SNP [dm6]	T	C	3.314e^-4	0.994	NON_SYNONYMOUS_CODING Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20621001	3R_20621001_SNP [dm3] 3R_24795279_SNP [dm6]	T	A	3.314e^-4	0.994	INTRON Ets96B
3R	17610576	3R_17610576_SNP [dm3] 3R_21784854_SNP [dm6]	C	T	3.314e^-4	0.994	UTR_3_PRIME CASK DOWNSTREAM CASK EXON CRG	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	691646	X_691646_SNP [dm3] X_797613_SNP [dm6]	A	G	3.340e^-4	0.994	NON_SYNONYMOUS_CODING Rbf DOWNSTREAM CG16989	TF binding site BDTNP1_TFBS_dl
3L	1359945	3L_1359945_SNP [dm3] 3L_1359945_SNP [dm6]	C	G	3.364e^-4	0.994	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3813093	2L_3813093_SNP [dm3] 2L_3813093_SNP [dm6]	T	C	3.372e^-4	0.994	SYNONYMOUS_CODING CG3407	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13261468	2R_13261468_SNP [dm3] 2R_17373963_SNP [dm6]	C	T	3.376e^-4	0.994	SYNONYMOUS_CODING mbl UTR_3_PRIME mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	14418888	X_14418888_SNP [dm3] X_14524855_SNP [dm6]	T	G	3.377e^-4	0.994	INTERGENIC
3R	2637198	3R_2637198_SNP [dm3] 3R_6811476_SNP [dm6]	G	A	3.378e^-4	0.994	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	12946830	2R_12946830_SNP [dm3] 2R_17059325_SNP [dm6]	T	G	3.382e^-4	0.994	DOWNSTREAM CG8950 & 1 other INTERGENIC
2R	9878672	2R_9878672_SNP [dm3] 2R_13991167_SNP [dm6]	C	A	3.388e^-4	0.994	UPSTREAM mam & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Ubx
3R	3393136	3R_3393136_SNP [dm3] 3R_7567414_SNP [dm6]	G	A	3.388e^-4	0.994	INTERGENIC
3R	11416128	3R_11416128_SNP [dm3] 3R_15590406_SNP [dm6]	G	A	3.389e^-4	0.994	INTERGENIC
X	22150868	X_22150868_SNP [dm3] X_22749032_SNP [dm6]	C	G	3.389e^-4	0.994	INTRON CR44997
3L	8155638	3L_8155638_SNP [dm3] 3L_8162538_SNP [dm6]	A	G	3.390e^-4	0.994	INTRON CG13675
X	14473284	X_14473284_DEL [dm3] X_14579251_DEL [dm6]	TCAGTATAAAT...	T	3.390e^-4	0.994	INTERGENIC
3R	23882571	3R_23882571_SNP [dm3] 3R_28056849_SNP [dm6]	C	T	3.400e^-4	0.994	INTRON CG34362
X	14471724	X_14471724_SNP [dm3] X_14577691_SNP [dm6]	C	A	3.400e^-4	0.994	INTERGENIC
3L	8219554	3L_8219554_SNP [dm3] 3L_8226454_SNP [dm6]	C	T	3.401e^-4	0.994	INTERGENIC
2L	6770392	2L_6770392_SNP [dm3] 2L_6770392_SNP [dm6]	T	C	3.409e^-4	0.994	NON_SYNONYMOUS_CODING CG11321
2L	10636185	2L_10636185_SNP [dm3] 2L_10636185_SNP [dm6]	A	C	3.413e^-4	0.994	INTRON CG7329
3L	1254717	3L_1254717_SNP [dm3] 3L_1254717_SNP [dm6]	T	C	3.413e^-4	0.994	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	9788883	3L_9788883_SNP [dm3] 3L_9795783_SNP [dm6]	C	T	3.416e^-4	0.994	INTRON Zasp67
3L	5876379	3L_5876379_SNP [dm3] 3L_5883279_SNP [dm6]	T	C	3.416e^-4	0.994	SYNONYMOUS_CODING CG13287	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20325515	3R_20325515_SNP [dm3] 3R_24499793_SNP [dm6]	A	T	3.420e^-4	0.994	INTERGENIC
2R	6442423	2R_6442423_SNP [dm3] 2R_10554918_SNP [dm6]	A	C	3.421e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	15261480	2R_15261480_SNP [dm3] 2R_19373975_SNP [dm6]	A	T	3.421e^-4	0.994	UPSTREAM CG9416 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	3594164	3L_3594164_SNP [dm3] 3L_3594164_SNP [dm6]	T	C	3.430e^-4	0.994	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3163584	X_3163584_SNP [dm3] X_3269551_SNP [dm6]	G	C	3.434e^-4	0.994	INTRON dnc
2R	14885550	2R_14885550_SNP [dm3] 2R_18998045_SNP [dm6]	G	A	3.434e^-4	0.994	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13413151	2L_13413151_SNP [dm3] 2L_13413151_SNP [dm6]	A	T	3.438e^-4	0.994	NON_SYNONYMOUS_CODING CG16848 DOWNSTREAM CG16956	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25524535	3R_25524535_SNP [dm3] 3R_29698813_SNP [dm6]	C	T	3.439e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	9650512	X_9650512_SNP [dm3] X_9756479_SNP [dm6]	T	A	3.442e^-4	0.994	DOWNSTREAM Sp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	25204555	3R_25204555_INS [dm3] 3R_29378833_INS [dm6]	C	CCTC	3.442e^-4	0.994	INTRON Ptp99A
2R	6646998	2R_6646998_SNP [dm3] 2R_10759493_SNP [dm6]	T	G	3.445e^-4	0.994	INTRON CG33144
2L	8514798	2L_8514798_SNP [dm3] 2L_8514798_SNP [dm6]	C	T	3.451e^-4	0.994	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16278998	2R_16278998_SNP [dm3] 2R_20391493_SNP [dm6]	C	A	3.451e^-4	0.994	INTERGENIC
2R	18369046	2R_18369046_SNP [dm3] 2R_22481541_SNP [dm6]	G	C	3.472e^-4	0.994	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19012676	3R_19012676_SNP [dm3] 3R_23186954_SNP [dm6]	G	A	3.475e^-4	0.994	UTR_3_PRIME cnc
2L	9439249	2L_9439249_SNP [dm3] 2L_9439249_SNP [dm6]	C	A	3.483e^-4	0.994	DOWNSTREAM CG33723 INTRON numb
X	14859438	X_14859438_SNP [dm3] X_14965405_SNP [dm6]	G	T	3.487e^-4	0.994	INTRON eag
2R	1021839	2R_1021839_SNP [dm3] 2R_5134334_SNP [dm6]	C	G	3.519e^-4	0.994	INTERGENIC	transposable element FlyBase
2R	1021910	2R_1021910_SNP [dm3] 2R_5134405_SNP [dm6]	T	A	3.519e^-4	0.994	INTERGENIC	transposable element FlyBase
2L	10014453	2L_10014453_SNP [dm3] 2L_10014453_SNP [dm6]	G	A	3.523e^-4	0.994	NON_SYNONYMOUS_CODING CG13131
X	14473265	X_14473265_SNP [dm3] X_14579232_SNP [dm6]	T	C	3.543e^-4	0.994	INTERGENIC
2R	10937699	2R_10937699_INS [dm3] 2R_15050194_INS [dm6]	C	CGCTCCACC	3.547e^-4	0.994	EXON CR43622	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21746028	3R_21746028_SNP [dm3] 3R_25920306_SNP [dm6]	G	C	3.561e^-4	0.994	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG14546
3L	12066932	3L_12066932_SNP [dm3] 3L_12073832_SNP [dm6]	A	T	3.565e^-4	0.994	INTRON Sema-5c
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	3.574e^-4	0.994	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23848882	3R_23848882_SNP [dm3] 3R_28023160_SNP [dm6]	T	C	3.590e^-4	0.994	INTERGENIC
3L	4352895	3L_4352895_SNP [dm3] 3L_4352895_SNP [dm6]	A	C	3.604e^-4	0.994	INTRON Cip4
X	14471727	X_14471727_SNP [dm3] X_14577694_SNP [dm6]	C	T	3.607e^-4	0.994	INTERGENIC
3L	10357218	3L_10357218_SNP [dm3] 3L_10364118_SNP [dm6]	A	G	3.610e^-4	0.994	UPSTREAM CR44327 EXON CR44327	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11512267	2R_11512267_SNP [dm3] 2R_15624762_SNP [dm6]	A	T	3.614e^-4	0.994	INTRON CG42524
2R	1148705	2R_1148705_DEL [dm3] 2R_5261200_DEL [dm6]	GTGACGGCCAAAATTACTCT...	TG	3.622e^-4	0.994	INTRON d4	transposable element FlyBase
2R	9508664	2R_9508664_SNP [dm3] 2R_13621159_SNP [dm6]	G	A	3.627e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	15052340	2L_15052340_SNP [dm3] 2L_15052340_SNP [dm6]	C	T	3.634e^-4	0.994	INTRON ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20133827	2L_20133827_SNP [dm3] 2L_20133827_SNP [dm6]	T	A	3.652e^-4	0.994	UTR_3_PRIME CG10651
X	7483640	X_7483640_DEL [dm3] X_7589607_DEL [dm6]	GGGTTGAG	G	3.657e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs
2L	8515035	2L_8515035_SNP [dm3] 2L_8515035_SNP [dm6]	G	T	3.659e^-4	0.994	UPSTREAM PIG-U & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	3231333	X_3231333_SNP [dm3] X_3337300_SNP [dm6]	C	G	3.664e^-4	0.994	SYNONYMOUS_CODING dnc INTRON CR44886
3R	6574413	3R_6574413_SNP [dm3] 3R_10748691_SNP [dm6]	G	C	3.681e^-4	0.994	INTRON TkR86C
3L	8155332	3L_8155332_SNP [dm3] 3L_8162232_SNP [dm6]	C	T	3.683e^-4	0.994	INTRON CG13675	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13316422	3L_13316422_SNP [dm3] 3L_13323322_SNP [dm6]	T	G	3.693e^-4	0.994	DOWNSTREAM CR44558 INTERGENIC
2R	14383299	2R_14383299_SNP [dm3] 2R_18495794_SNP [dm6]	T	A	3.705e^-4	0.994	INTRON CG30116
2R	9532851	2R_9532851_SNP [dm3] 2R_13645346_SNP [dm6]	A	G	3.705e^-4	0.994	INTRON fas
3L	13034928	3L_13034928_SNP [dm3] 3L_13041828_SNP [dm6]	C	T	3.710e^-4	0.994	UTR_5_PRIME RpS4 UPSTREAM snoRNA:Psi28S-3327a DOWNSTREAM SRm160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	26294881	3R_26294881_SNP [dm3] 3R_30469159_SNP [dm6]	A	T	3.716e^-4	0.994	INTRON PH4alphaEFB
3R	2640066	3R_2640066_SNP [dm3] 3R_6814344_SNP [dm6]	G	T	3.717e^-4	0.994	INTRON CR42651	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15705697	X_15705697_SNP [dm3] X_15811664_SNP [dm6]	C	T	3.722e^-4	0.994	UPSTREAM sd DOWNSTREAM CG8509 INTRON sd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	16163691	X_16163691_SNP [dm3] X_16269658_SNP [dm6]	G	A	3.733e^-4	0.994	INTRON kat80
2L	12303665	2L_12303665_SNP [dm3] 2L_12303665_SNP [dm6]	T	C	3.736e^-4	0.994	INTRON aret
3R	19169703	3R_19169703_SNP [dm3] 3R_23343981_SNP [dm6]	A	C	3.756e^-4	0.994	INTRON pnt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15658328	2R_15658328_SNP [dm3] 2R_19770823_SNP [dm6]	C	A	3.758e^-4	0.994	SPLICE_SITE_REGION Or56a INTRON Or56a
X	11904400	X_11904400_SNP [dm3] X_12010367_SNP [dm6]	A	G	3.764e^-4	0.994	SYNONYMOUS_CODING CG1492 DOWNSTREAM CG1806
3L	10357482	3L_10357482_SNP [dm3] 3L_10364382_SNP [dm6]	G	A	3.769e^-4	0.994	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
3R	26296819	3R_26296819_SNP [dm3] 3R_30471097_SNP [dm6]	G	A	3.783e^-4	0.994	INTRON PH4alphaEFB
2L	12429081	2L_12429081_SNP [dm3] 2L_12429081_SNP [dm6]	C	T	3.788e^-4	0.994	SYNONYMOUS_CODING CG6388 DOWNSTREAM CG5435	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26164138	3R_26164138_SNP [dm3] 3R_30338416_SNP [dm6]	T	G	3.788e^-4	0.994	INTRON hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9880058	2R_9880058_SNP [dm3] 2R_13992553_SNP [dm6]	G	A	3.791e^-4	0.994	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7196276	3R_7196276_SNP [dm3] 3R_11370554_SNP [dm6]	A	G	3.796e^-4	0.994	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9626738	2L_9626738_SNP [dm3] 2L_9626738_SNP [dm6]	G	A	3.798e^-4	0.994	INTERGENIC
X	19395392	X_19395392_DEL [dm3] X_19501359_DEL [dm6]	TT	T	3.799e^-4	0.994	INTRON Pfrx & 1 other
2R	9082984	2R_9082984_SNP [dm3] 2R_13195479_SNP [dm6]	C	T	3.802e^-4	0.994	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22457730	3R_22457730_SNP [dm3] 3R_26632008_SNP [dm6]	C	A	3.805e^-4	0.994	SYNONYMOUS_CODING TwdlN	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19774105	3R_19774105_SNP [dm3] 3R_23948383_SNP [dm6]	A	G	3.805e^-4	0.994	UTR_5_PRIME CG12268
2L	15214968	2L_15214968_SNP [dm3] 2L_15214968_SNP [dm6]	T	C	3.814e^-4	0.994	UPSTREAM CG43230 INTERGENIC
2L	1445404	2L_1445404_SNP [dm3] 2L_1445404_SNP [dm6]	A	G	3.816e^-4	0.994	INTERGENIC
X	19435648	X_19435648_SNP [dm3] X_19541615_SNP [dm6]	C	A	3.817e^-4	0.994	INTRON CG32532
2R	824460	2R_824460_SNP [dm3] 2R_4936955_SNP [dm6]	T	A	3.837e^-4	0.994	INTRON Ir41a	transposable element FlyBase
2R	17762938	2R_17762938_SNP [dm3] 2R_21875433_SNP [dm6]	C	T	3.845e^-4	0.994	INTRON Fili	TF binding site mE1_TFBS_sens
X	5388492	X_5388492_SNP [dm3] X_5494459_SNP [dm6]	C	T	3.845e^-4	0.994	NON_SYNONYMOUS_CODING frma DOWNSTREAM SPR
X	5498037	X_5498037_SNP [dm3] X_5604004_SNP [dm6]	T	C	3.850e^-4	0.994	INTRON Vsx1
3R	26299661	3R_26299661_SNP [dm3] 3R_30473939_SNP [dm6]	G	C	3.850e^-4	0.994	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da
3L	23476463	3L_23476463_SNP [dm3] 3L_23483363_SNP [dm6]	C	T	3.854e^-4	0.994	INTERGENIC	transposable element FlyBase
X	10078498	X_10078498_SNP [dm3] X_10184465_SNP [dm6]	A	G	3.858e^-4	0.994	INTRON CG43902 & 1 other
2L	5417859	2L_5417859_SNP [dm3] 2L_5417859_SNP [dm6]	T	A	3.858e^-4	0.994	INTERGENIC
X	4424003	X_4424003_SNP [dm3] X_4529970_SNP [dm6]	C	G	3.860e^-4	0.994	UPSTREAM CG3556 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	14498801	3L_14498801_SNP [dm3] 3L_14505701_SNP [dm6]	A	C	3.861e^-4	0.994	INTRON bbg
2R	12543418	2R_12543418_SNP [dm3] 2R_16655913_SNP [dm6]	G	A	3.863e^-4	0.994	SYNONYMOUS_CODING Picot UPSTREAM Nach	TF binding site mE1_TFBS_cad
3L	1751105	3L_1751105_SNP [dm3] 3L_1751105_SNP [dm6]	T	C	3.870e^-4	0.994	SYNONYMOUS_CODING CG13921	TF binding site mE1_TFBS_chinmo
3R	20442939	3R_20442939_SNP [dm3] 3R_24617217_SNP [dm6]	A	G	3.881e^-4	0.994	SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7599835	3L_7599835_SNP [dm3] 3L_7606735_SNP [dm6]	G	T	3.883e^-4	0.994	INTRON CG33275
3L	23217578	3L_23217578_SNP [dm3] 3L_23224478_SNP [dm6]	G	A	3.885e^-4	0.994	INTRON nAChRalpha4
2R	14885190	2R_14885190_SNP [dm3] 2R_18997685_SNP [dm6]	C	T	3.889e^-4	0.994	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14941647	3R_14941647_INS [dm3] 3R_19115925_INS [dm6]	A	AA	3.891e^-4	0.994	INTRON CG6040
3R	26298512	3R_26298512_SNP [dm3] 3R_30472790_SNP [dm6]	G	A	3.894e^-4	0.994	INTRON PH4alphaEFB
X	14854489	X_14854489_SNP [dm3] X_14960456_SNP [dm6]	G	C	3.898e^-4	0.994	INTRON eag	TF binding site mE1_TFBS_bab1
X	14854490	X_14854490_SNP [dm3] X_14960457_SNP [dm6]	G	A	3.898e^-4	0.994	INTRON eag	TF binding site mE1_TFBS_bab1
2L	1907903	2L_1907903_SNP [dm3] 2L_1907903_SNP [dm6]	G	A	3.906e^-4	0.994	INTRON CG7337
2L	7465345	2L_7465345_SNP [dm3] 2L_7465345_SNP [dm6]	A	G	3.926e^-4	0.994	INTERGENIC
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	3.938e^-4	0.994	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	4406333	2R_4406333_DEL [dm3] 2R_8518828_DEL [dm6]	AC	A	3.938e^-4	0.994	INTRON mtt
2R	14637304	2R_14637304_SNP [dm3] 2R_18749799_SNP [dm6]	A	C	3.939e^-4	0.994	INTRON Hs3st-A
2R	19908080	2R_19908080_SNP [dm3] 2R_24020557_SNP [dm6]	T	C	3.943e^-4	0.994	DOWNSTREAM CG3121 INTRON CG3907
3L	15957541	3L_15957541_SNP [dm3] 3L_15964441_SNP [dm6]	T	C	3.943e^-4	0.994	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8055959	3L_8055959_SNP [dm3] 3L_8062859_SNP [dm6]	G	C	3.944e^-4	0.994	INTERGENIC
2L	9125348	2L_9125348_SNP [dm3] 2L_9125348_SNP [dm6]	A	T	3.944e^-4	0.994	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	17163755	2R_17163755_SNP [dm3] 2R_21276250_SNP [dm6]	T	G	3.961e^-4	0.994	SYNONYMOUS_CODING Rgk3
3L	10506570	3L_10506570_SNP [dm3] 3L_10513470_SNP [dm6]	G	A	3.965e^-4	0.994	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
X	14473015	X_14473015_SNP [dm3] X_14578982_SNP [dm6]	A	C	3.965e^-4	0.994	INTERGENIC
3L	20272873	3L_20272873_SNP [dm3] 3L_20279773_SNP [dm6]	G	T	3.981e^-4	0.994	SYNONYMOUS_CODING gogo
2R	8148159	2R_8148159_SNP [dm3] 2R_12260654_SNP [dm6]	G	A	3.990e^-4	0.994	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	14855165	X_14855165_SNP [dm3] X_14961132_SNP [dm6]	A	C	3.993e^-4	0.994	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	20705748	2L_20705748_SNP [dm3] 2L_20705748_SNP [dm6]	C	T	4.001e^-4	0.994	INTRON Hr38	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1242884	3L_1242884_SNP [dm3] 3L_1242884_SNP [dm6]	A	T	4.016e^-4	0.994	SYNONYMOUS_CODING Klp61F DOWNSTREAM CG9194	TF binding site mE1_TFBS_sens
3R	19189615	3R_19189615_SNP [dm3] 3R_23363893_SNP [dm6]	G	A	4.019e^-4	0.994	UPSTREAM CG4408 INTERGENIC
X	14854472	X_14854472_DEL [dm3] X_14960439_DEL [dm6]	TAGGAGTCTAT...	T	4.033e^-4	0.994	INTRON eag	TF binding site mE1_TFBS_bab1
X	11536421	X_11536421_SNP [dm3] X_11642388_SNP [dm6]	G	C	4.041e^-4	0.994	INTRON Ptp10D
3L	10829021	3L_10829021_SNP [dm3] 3L_10835921_SNP [dm6]	A	T	4.053e^-4	0.994	INTERGENIC
2L	12428580	2L_12428580_SNP [dm3] 2L_12428580_SNP [dm6]	C	G	4.060e^-4	0.994	SYNONYMOUS_CODING CG6388 UPSTREAM CG5446	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11980614	2R_11980614_SNP [dm3] 2R_16093109_SNP [dm6]	T	C	4.079e^-4	0.994	INTRON Dg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11412733	X_11412733_SNP [dm3] X_11518700_SNP [dm6]	C	T	4.087e^-4	0.994	INTRON Drak
2R	15433939	2R_15433939_SNP [dm3] 2R_19546434_SNP [dm6]	A	G	4.088e^-4	0.994	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	7599918	3L_7599918_SNP [dm3] 3L_7606818_SNP [dm6]	G	T	4.089e^-4	0.994	INTRON CG33275
X	14473415	X_14473415_SNP [dm3] X_14579382_SNP [dm6]	T	C	4.123e^-4	0.994	INTERGENIC
3L	5775619	3L_5775619_SNP [dm3] 3L_5782519_SNP [dm6]	T	G	4.126e^-4	0.994	DOWNSTREAM Cralbp INTRON Pmi & 1 other
3L	15943155	3L_15943155_DEL [dm3] 3L_15950055_DEL [dm6]	AGCCA	A	4.137e^-4	0.994	INTRON Pka-C3
3L	6395533	3L_6395533_SNP [dm3] 3L_6402433_SNP [dm6]	G	A	4.141e^-4	0.994	INTRON CG42747
2R	13117881	2R_13117881_SNP [dm3] 2R_17230376_SNP [dm6]	C	G	4.145e^-4	0.994	INTRON mbl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2749468	3R_2749468_SNP [dm3] 3R_6923746_SNP [dm6]	G	A	4.146e^-4	0.994	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18365035	3R_18365035_SNP [dm3] 3R_22539313_SNP [dm6]	T	A	4.147e^-4	0.994	UPSTREAM CR45646 INTRON CG5326
3R	26297803	3R_26297803_SNP [dm3] 3R_30472081_SNP [dm6]	A	G	4.152e^-4	0.994	INTRON PH4alphaEFB
3R	17561132	3R_17561132_SNP [dm3] 3R_21735410_SNP [dm6]	T	G	4.152e^-4	0.994	DOWNSTREAM Sfp93F INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18606286	2R_18606286_SNP [dm3] 2R_22718781_SNP [dm6]	C	T	4.158e^-4	0.994	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9785606	3L_9785606_SNP [dm3] 3L_9792506_SNP [dm6]	G	T	4.159e^-4	0.994	SYNONYMOUS_CODING Zasp67
3L	8147113	3L_8147113_SNP [dm3] 3L_8154013_SNP [dm6]	C	T	4.165e^-4	0.994	DOWNSTREAM CG42445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11060505	3L_11060505_SNP [dm3] 3L_11067405_SNP [dm6]	T	G	4.168e^-4	0.994	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
3L	11189189	3L_11189189_SNP [dm3] 3L_11196089_SNP [dm6]	T	C	4.169e^-4	0.994	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12004265	2R_12004265_DEL [dm3] 2R_16116760_DEL [dm6]	TGTT	T	4.174e^-4	0.994	UTR_3_PRIME Asph UPSTREAM Jhedup
2L	3774162	2L_3774162_SNP [dm3] 2L_3774162_SNP [dm6]	A	G	4.187e^-4	0.994	INTRON bowl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19001250	3R_19001250_SNP [dm3] 3R_23175528_SNP [dm6]	C	G	4.191e^-4	0.994	INTRON Irk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	23292057	3L_23292057_SNP [dm3] 3L_23298957_SNP [dm6]	G	A	4.205e^-4	0.994	INTERGENIC	transposable element FlyBase
3R	4874480	3R_4874480_INS [dm3] 3R_9048758_INS [dm6]	A	ACATA	4.227e^-4	0.994	UPSTREAM Rel & 1 other INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12345302	3L_12345302_SNP [dm3] 3L_12352202_SNP [dm6]	C	T	4.230e^-4	0.994	UPSTREAM CrzR INTERGENIC
2R	11999790	2R_11999790_SNP [dm3] 2R_16112285_SNP [dm6]	T	G	4.245e^-4	0.994	NON_SYNONYMOUS_CODING Asph
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	4.246e^-4	0.994	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8503971	2L_8503971_DEL [dm3] 2L_8503971_DEL [dm6]	AATTCATGCAGGGTTCGTT...	A	4.251e^-4	0.994	INTRON Dh31
3R	1052507	3R_1052507_SNP [dm3] 3R_5226785_SNP [dm6]	C	G	4.257e^-4	0.994	SYNONYMOUS_CODING Vps37B DOWNSTREAM Kat60	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13282884	2R_13282884_DEL [dm3] 2R_17395379_DEL [dm6]	ATCGGCCTTAA...	A	4.259e^-4	0.994	INTRON Sip1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
3L	6396334	3L_6396334_SNP [dm3] 3L_6403234_SNP [dm6]	G	C	4.268e^-4	0.994	INTRON CG42747
X	8716427	X_8716427_SNP [dm3] X_8822394_SNP [dm6]	G	A	4.270e^-4	0.994	INTERGENIC
2R	15930251	2R_15930251_SNP [dm3] 2R_20042746_SNP [dm6]	C	T	4.271e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	1072685	2R_1072685_SNP [dm3] 2R_5185180_SNP [dm6]	A	T	4.283e^-4	0.994	INTRON Nipped-A	transposable element FlyBase
3R	19069533	3R_19069533_SNP [dm3] 3R_23243811_SNP [dm6]	A	G	4.285e^-4	0.994	INTRON CG4467	TF binding site mE1_TFBS_inv
2R	2690841	2R_2690841_SNP [dm3] 2R_6803336_SNP [dm6]	C	A	4.286e^-4	0.994	INTERGENIC
2R	16790304	2R_16790304_SNP [dm3] 2R_20902799_SNP [dm6]	T	C	4.291e^-4	0.994	UTR_5_PRIME otp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	5071214	2L_5071214_SNP [dm3] 2L_5071214_SNP [dm6]	T	G	4.293e^-4	0.994	UPSTREAM CR45305 DOWNSTREAM qtc & 1 other INTRON RpL37A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	8292916	X_8292916_SNP [dm3] X_8398883_SNP [dm6]	C	G	4.295e^-4	0.994	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7483098	3R_7483098_SNP [dm3] 3R_11657376_SNP [dm6]	A	G	4.295e^-4	0.994	INTRON CG42327	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13165387	3L_13165387_SNP [dm3] 3L_13172287_SNP [dm6]	A	T	4.309e^-4	0.994	INTERGENIC
2L	4813912	2L_4813912_SNP [dm3] 2L_4813912_SNP [dm6]	T	C	4.319e^-4	0.994	INTRON CG15629
3R	22929981	3R_22929981_SNP [dm3] 3R_27104259_SNP [dm6]	A	C	4.326e^-4	0.994	INTRON CG6074
3R	5655544	3R_5655544_INS [dm3] 3R_9829822_INS [dm6]	T	TTGCTTT	4.328e^-4	0.994	INTRON Teh1
3R	25276336	3R_25276336_SNP [dm3] 3R_29450614_SNP [dm6]	T	G	4.331e^-4	0.994	INTRON Ptp99A
X	8837129	X_8837129_SNP [dm3] X_8943096_SNP [dm6]	C	A	4.342e^-4	0.994	INTRON rdgA
3R	15190705	3R_15190705_SNP [dm3] 3R_19364983_SNP [dm6]	C	T	4.346e^-4	0.994	INTERGENIC
2L	12423592	2L_12423592_SNP [dm3] 2L_12423592_SNP [dm6]	A	G	4.350e^-4	0.994	UPSTREAM vir-1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	11320385	X_11320385_SNP [dm3] X_11426352_SNP [dm6]	C	A	4.353e^-4	0.994	INTRON Gs2	TF binding site BDTNP1_TFBS_dl
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	4.354e^-4	0.994	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
X	10454981	X_10454981_SNP [dm3] X_10560948_SNP [dm6]	T	G	4.359e^-4	0.994	INTRON spri
X	14854484	X_14854484_SNP [dm3] X_14960451_SNP [dm6]	A	C	4.373e^-4	0.994	INTRON eag	TF binding site mE1_TFBS_bab1
3L	23390911	3L_23390911_SNP [dm3] 3L_23397811_SNP [dm6]	A	T	4.373e^-4	0.994	INTERGENIC	transposable element FlyBase
X	16263468	X_16263468_SNP [dm3] X_16369435_SNP [dm6]	A	G	4.376e^-4	0.994	UTR_3_PRIME nonA DOWNSTREAM nonA INTRON nonA
2R	13512037	2R_13512037_SNP [dm3] 2R_17624532_SNP [dm6]	C	T	4.410e^-4	0.994	INTRON CG10936
3R	10139076	3R_10139076_SNP [dm3] 3R_14313354_SNP [dm6]	G	A	4.411e^-4	0.994	SYNONYMOUS_CODING CG31321
2L	17855162	2L_17855162_SNP [dm3] 2L_17855162_SNP [dm6]	T	C	4.416e^-4	0.994	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18040947	2L_18040947_DEL [dm3] 2L_18040947_DEL [dm6]	TG	T	4.422e^-4	0.994	INTRON rdo
3R	3117993	3R_3117993_SNP [dm3] 3R_7292271_SNP [dm6]	T	A	4.423e^-4	0.994	INTRON rn
3L	15702866	3L_15702866_SNP [dm3] 3L_15709766_SNP [dm6]	C	A	4.434e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13724824	2L_13724824_SNP [dm3] 2L_13724824_SNP [dm6]	C	A	4.444e^-4	0.994	INTERGENIC
2L	20143771	2L_20143771_SNP [dm3] 2L_20143771_SNP [dm6]	T	C	4.450e^-4	0.994	INTERGENIC
2R	18792201	2R_18792201_SNP [dm3] 2R_22904678_SNP [dm6]	T	A	4.451e^-4	0.994	INTRON nahoda
2L	10636170	2L_10636170_INS [dm3] 2L_10636170_INS [dm6]	A	ATGA	4.457e^-4	0.994	INTRON CG7329
X	5485775	X_5485775_DEL [dm3] X_5591742_DEL [dm6]	ATA	A	4.460e^-4	0.994	INTERGENIC
2L	12853371	2L_12853371_SNP [dm3] 2L_12853371_SNP [dm6]	C	G	4.464e^-4	0.994	INTERGENIC
2L	1534304	2L_1534304_SNP [dm3] 2L_1534304_SNP [dm6]	T	C	4.470e^-4	0.994	INTERGENIC
2L	8512119	2L_8512119_INS [dm3] 2L_8512119_INS [dm6]	T	TATTAGTAGAGACAGAC...	4.479e^-4	0.994	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	9566611	3L_9566611_SNP [dm3] 3L_9573511_SNP [dm6]	A	C	4.480e^-4	0.994	INTRON CG42673
3R	26295786	3R_26295786_SNP [dm3] 3R_30470064_SNP [dm6]	G	T	4.485e^-4	0.994	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16642238	2R_16642238_SNP [dm3] 2R_20754733_SNP [dm6]	G	A	4.498e^-4	0.994	DOWNSTREAM CG34202 INTERGENIC
3L	8151508	3L_8151508_SNP [dm3] 3L_8158408_SNP [dm6]	A	T	4.514e^-4	0.994	DOWNSTREAM CG43886 INTRON CG42445
3L	5320686	3L_5320686_INS [dm3] 3L_5327586_INS [dm6]	C	CA	4.516e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8512136	2L_8512136_INS [dm3] 2L_8512136_INS [dm6]	A	AAAACATTAACATATTAACT...	4.526e^-4	0.994	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	10469558	3L_10469558_SNP [dm3] 3L_10476458_SNP [dm6]	G	T	4.535e^-4	0.994	INTERGENIC
3L	9785511	3L_9785511_SNP [dm3] 3L_9792411_SNP [dm6]	C	G	4.539e^-4	0.994	NON_SYNONYMOUS_CODING Zasp67
3L	8542845	3L_8542845_DEL [dm3] 3L_8549745_DEL [dm6]	CG	C	4.540e^-4	0.994	INTRON rhea	TF binding site BDTNP1_TFBS_twi
X	2904939	X_2904939_SNP [dm3] X_3010906_SNP [dm6]	T	C	4.544e^-4	0.994	INTRON kirre
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	4.547e^-4	0.994	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5498006	X_5498006_SNP [dm3] X_5603973_SNP [dm6]	A	C	4.547e^-4	0.994	INTRON Vsx1
3L	6653060	3L_6653060_SNP [dm3] 3L_6659960_SNP [dm6]	T	C	4.551e^-4	0.994	INTERGENIC
2L	10459712	2L_10459712_SNP [dm3] 2L_10459712_SNP [dm6]	G	T	4.563e^-4	0.994	SYNONYMOUS_CODING LM408 INTRON LM408
2R	9400877	2R_9400877_SNP [dm3] 2R_13513372_SNP [dm6]	T	C	4.571e^-4	0.994	UTR_3_PRIME Vmat DOWNSTREAM mip120
3L	12482248	3L_12482248_INS [dm3] 3L_12489148_INS [dm6]	T	TT	4.572e^-4	0.994	INTRON CG10660
3R	25322026	3R_25322026_SNP [dm3] 3R_29496304_SNP [dm6]	T	C	4.574e^-4	0.994	UPSTREAM CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16647464	3R_16647464_SNP [dm3] 3R_20821742_SNP [dm6]	C	A	4.575e^-4	0.994	UTR_5_PRIME CG17271 UPSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	19173582	3R_19173582_SNP [dm3] 3R_23347860_SNP [dm6]	G	A	4.594e^-4	0.994	UPSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19173663	3R_19173663_SNP [dm3] 3R_23347941_SNP [dm6]	A	G	4.594e^-4	0.994	UPSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10796412	3L_10796412_SNP [dm3] 3L_10803312_SNP [dm6]	C	T	4.596e^-4	0.994	DOWNSTREAM CG12523 & 1 other INTERGENIC
3L	9566619	3L_9566619_SNP [dm3] 3L_9573519_SNP [dm6]	G	T	4.599e^-4	0.994	INTRON CG42673
2L	182145	2L_182145_SNP [dm3] 2L_182145_SNP [dm6]	A	C	4.601e^-4	0.994	UPSTREAM spen INTRON spen
X	6481308	X_6481308_SNP [dm3] X_6587275_SNP [dm6]	A	G	4.622e^-4	0.994	INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7593255	3L_7593255_SNP [dm3] 3L_7600155_SNP [dm6]	T	A	4.628e^-4	0.994	INTRON CG33275
2L	2816748	2L_2816748_SNP [dm3] 2L_2816748_SNP [dm6]	A	G	4.629e^-4	0.994	SYNONYMOUS_CODING Duox UPSTREAM CG15400	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7193283	2L_7193283_SNP [dm3] 2L_7193283_SNP [dm6]	C	T	4.630e^-4	0.994	SYNONYMOUS_CODING CG4497
3L	8151524	3L_8151524_SNP [dm3] 3L_8158424_SNP [dm6]	C	T	4.634e^-4	0.994	DOWNSTREAM CG43886 INTRON CG42445
2L	8949262	2L_8949262_SNP [dm3] 2L_8949262_SNP [dm6]	A	G	4.639e^-4	0.994	INTRON C1GalTA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12284560	2L_12284560_SNP [dm3] 2L_12284560_SNP [dm6]	G	T	4.644e^-4	0.994	INTRON aret
2L	13181352	2L_13181352_SNP [dm3] 2L_13181352_SNP [dm6]	A	G	4.647e^-4	0.994	SYNONYMOUS_CODING CG31849 INTRON CG5287	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9068991	2R_9068991_SNP [dm3] 2R_13181486_SNP [dm6]	C	T	4.656e^-4	0.994	NON_SYNONYMOUS_CODING seq UTR_5_PRIME CG17724 INTRON CG17724 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4417675	2L_4417675_SNP [dm3] 2L_4417675_SNP [dm6]	T	C	4.665e^-4	0.994	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2R	15713512	2R_15713512_SNP [dm3] 2R_19826007_SNP [dm6]	A	G	4.666e^-4	0.994	UPSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	19012585	3R_19012585_SNP [dm3] 3R_23186863_SNP [dm6]	T	G	4.675e^-4	0.994	UTR_3_PRIME cnc
2L	2649343	2L_2649343_SNP [dm3] 2L_2649343_SNP [dm6]	T	C	4.681e^-4	0.994	SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125 DOWNSTREAM CG43851
3R	6404401	3R_6404401_SNP [dm3] 3R_10578679_SNP [dm6]	C	A	4.683e^-4	0.994	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	12904398	2L_12904398_SNP [dm3] 2L_12904398_SNP [dm6]	T	A	4.686e^-4	0.994	INTERGENIC
3R	27052080	3R_27052080_SNP [dm3] 3R_31226358_SNP [dm6]	C	T	4.697e^-4	0.994	SPLICE_SITE_REGION CG12054 INTRON CG12054	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20198159	2R_20198159_SNP [dm3] 2R_24310636_SNP [dm6]	T	G	4.698e^-4	0.994	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
3R	25550168	3R_25550168_SNP [dm3] 3R_29724446_SNP [dm6]	G	A	4.706e^-4	0.994	UPSTREAM CG18731 DOWNSTREAM Pcd INTRON CG7593	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	3213375	2R_3213375_SNP [dm3] 2R_7325870_SNP [dm6]	C	G	4.708e^-4	0.994	UPSTREAM CR45129 INTRON Dscam1	TF binding site BDTNP1_TFBS_dl
3R	16653684	3R_16653684_SNP [dm3] 3R_20827962_SNP [dm6]	A	T	4.709e^-4	0.994	DOWNSTREAM CR44047 INTRON AdSS EXON CR44047	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5114949	2R_5114949_SNP [dm3] 2R_9227444_SNP [dm6]	A	G	4.710e^-4	0.994	DOWNSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	18716213	3L_18716213_SNP [dm3] 3L_18723113_SNP [dm6]	T	A	4.718e^-4	0.994	SYNONYMOUS_CODING CG12477 UPSTREAM CR43985	TF binding site mE1_TFBS_cad
3L	9986118	3L_9986118_SNP [dm3] 3L_9993018_SNP [dm6]	T	A	4.719e^-4	0.994	INTRON dpr6
2L	18043274	2L_18043274_SNP [dm3] 2L_18043274_SNP [dm6]	A	T	4.740e^-4	0.994	INTRON rdo
X	12497156	X_12497156_SNP [dm3] X_12603123_SNP [dm6]	G	A	4.741e^-4	0.994	NON_SYNONYMOUS_CODING Sec16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18926742	3R_18926742_SNP [dm3] 3R_23101020_SNP [dm6]	G	A	4.746e^-4	0.994	DOWNSTREAM CG6738 INTRON CG13830
2L	4072363	2L_4072363_SNP [dm3] 2L_4072363_SNP [dm6]	T	G	4.752e^-4	0.994	INTRON ed
3L	6433847	3L_6433847_SNP [dm3] 3L_6440747_SNP [dm6]	A	C	4.762e^-4	0.994	INTRON CG42747
2L	12478606	2L_12478606_SNP [dm3] 2L_12478606_SNP [dm6]	C	G	4.764e^-4	0.994	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12898153	3L_12898153_SNP [dm3] 3L_12905053_SNP [dm6]	A	G	4.764e^-4	0.994	INTERGENIC
2R	12680261	2R_12680261_SNP [dm3] 2R_16792756_SNP [dm6]	G	T	4.767e^-4	0.994	NON_SYNONYMOUS_CODING CG15919 DOWNSTREAM CG15615 & 1 other
2R	14193734	2R_14193734_SNP [dm3] 2R_18306229_SNP [dm6]	G	A	4.768e^-4	0.994	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
3R	4357740	3R_4357740_SNP [dm3] 3R_8532018_SNP [dm6]	C	T	4.777e^-4	0.994	INTERGENIC
2R	9218037	2R_9218037_INS [dm3] 2R_13330532_INS [dm6]	A	ATGCCATGCCA...	4.782e^-4	0.994	EXON CR44206	TF binding site mE1_TFBS_cad
2L	4422753	2L_4422753_SNP [dm3] 2L_4422753_SNP [dm6]	A	T	4.786e^-4	0.994	INTRON CG15431
3R	26110521	3R_26110521_SNP [dm3] 3R_30284799_SNP [dm6]	C	T	4.803e^-4	0.994	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	19894416	2L_19894416_SNP [dm3] 2L_19894416_SNP [dm6]	T	A	4.813e^-4	0.994	INTRON sick	silencer mE1_HDAC_PRE
2R	12700736	2R_12700736_SNP [dm3] 2R_16813231_SNP [dm6]	G	T	4.818e^-4	0.994	DOWNSTREAM CR44379 INTERGENIC
X	14854788	X_14854788_SNP [dm3] X_14960755_SNP [dm6]	A	T	4.823e^-4	0.994	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10936977	2R_10936977_SNP [dm3] 2R_15049472_SNP [dm6]	A	T	4.825e^-4	0.994	DOWNSTREAM CR43622 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6723624	X_6723624_SNP [dm3] X_6829591_SNP [dm6]	T	C	4.835e^-4	0.994	NON_SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo
3L	5876508	3L_5876508_SNP [dm3] 3L_5883408_SNP [dm6]	C	T	4.836e^-4	0.994	SYNONYMOUS_CODING CG13287	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	3389645	3R_3389645_SNP [dm3] 3R_7563923_SNP [dm6]	A	T	4.838e^-4	0.994	INTERGENIC
3R	19626175	3R_19626175_SNP [dm3] 3R_23800453_SNP [dm6]	T	C	4.842e^-4	0.994	INTRON mbc
2L	11486817	2L_11486817_SNP [dm3] 2L_11486817_SNP [dm6]	A	T	4.842e^-4	0.994	UTR_3_PRIME CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	4.844e^-4	0.994	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7102505	2L_7102505_SNP [dm3] 2L_7102505_SNP [dm6]	G	C	4.851e^-4	0.994	INTRON Pvf3
X	3265573	X_3265573_SNP [dm3] X_3371540_SNP [dm6]	A	C	4.858e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15437170	2R_15437170_SNP [dm3] 2R_19549665_SNP [dm6]	C	T	4.859e^-4	0.994	INTRON sm
3L	7612131	3L_7612131_SNP [dm3] 3L_7619031_SNP [dm6]	G	T	4.865e^-4	0.994	INTRON CG33275
X	16163696	X_16163696_SNP [dm3] X_16269663_SNP [dm6]	T	C	4.886e^-4	0.994	INTRON kat80
3R	19498283	3R_19498283_SNP [dm3] 3R_23672561_SNP [dm6]	A	C	4.886e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12423684	2L_12423684_INS [dm3] 2L_12423684_INS [dm6]	T	TGTGGATAATTCCAT...	4.891e^-4	0.994	UPSTREAM vir-1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26066816	3R_26066816_SNP [dm3] 3R_30241094_SNP [dm6]	T	A	4.901e^-4	0.994	DOWNSTREAM CG9737 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14245046	2L_14245046_SNP [dm3] 2L_14245046_SNP [dm6]	T	C	4.906e^-4	0.994	INTERGENIC
2L	12880229	2L_12880229_SNP [dm3] 2L_12880229_SNP [dm6]	G	T	4.908e^-4	0.994	INTERGENIC
3R	23933100	3R_23933100_SNP [dm3] 3R_28107378_SNP [dm6]	T	A	4.910e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	18719546	3L_18719546_INS [dm3] 3L_18726446_INS [dm6]	T	TAAAAA	4.914e^-4	0.994	INTERGENIC
X	19565433	X_19565433_SNP [dm3] X_19671400_SNP [dm6]	G	T	4.919e^-4	0.994	SYNONYMOUS_CODING Zw DOWNSTREAM et	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	12698578	2R_12698578_SNP [dm3] 2R_16811073_SNP [dm6]	C	G	4.927e^-4	0.994	EXON CR44465	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7822246	3L_7822246_SNP [dm3] 3L_7829146_SNP [dm6]	C	T	4.933e^-4	0.994	INTRON Pdp1
2L	6554340	2L_6554340_SNP [dm3] 2L_6554340_SNP [dm6]	G	T	4.937e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10459715	2L_10459715_SNP [dm3] 2L_10459715_SNP [dm6]	C	A	4.956e^-4	0.994	SYNONYMOUS_CODING LM408 INTRON LM408
X	4873661	X_4873661_SNP [dm3] X_4979628_SNP [dm6]	A	C	4.972e^-4	0.994	INTRON CR44833
3L	6396416	3L_6396416_SNP [dm3] 3L_6403316_SNP [dm6]	G	A	4.977e^-4	0.994	INTRON CG42747
3L	7597033	3L_7597033_SNP [dm3] 3L_7603933_SNP [dm6]	A	G	4.977e^-4	0.994	NON_SYNONYMOUS_CODING CG33275
2L	13985812	2L_13985812_SNP [dm3] 2L_13985812_SNP [dm6]	T	C	4.990e^-4	0.994	SYNONYMOUS_CODING rk
X	11906910	X_11906910_SNP [dm3] X_12012877_SNP [dm6]	A	G	4.993e^-4	0.994	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15769198	2L_15769198_SNP [dm3] 2L_15769198_SNP [dm6]	C	T	4.994e^-4	0.994	SYNONYMOUS_CODING Ku80 UPSTREAM wek
X	8204861	X_8204861_SNP [dm3] X_8310828_SNP [dm6]	A	G	4.998e^-4	0.994	INTRON nAChRalpha3
3L	9137412	3L_9137412_SNP [dm3] 3L_9144312_SNP [dm6]	G	C	5.005e^-4	0.994	SYNONYMOUS_CODING nwk UTR_3_PRIME nwk UPSTREAM mir-4940 INTRON nwk	TF binding site mE1_TFBS_cad
2L	9510079	2L_9510079_SNP [dm3] 2L_9510079_SNP [dm6]	C	T	5.006e^-4	0.994	INTRON CG33298
X	5510646	X_5510646_DEL [dm3] X_5616613_DEL [dm6]	TT	T	5.025e^-4	0.994	UTR_3_PRIME RhoGAP5A UPSTREAM CG34434
3R	4791333	3R_4791333_SNP [dm3] 3R_8965611_SNP [dm6]	C	G	5.036e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14193698	3L_14193698_SNP [dm3] 3L_14200598_SNP [dm6]	A	C	5.048e^-4	0.994	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	13470976	X_13470976_SNP [dm3] X_13576943_SNP [dm6]	A	T	5.049e^-4	0.994	UTR_5_PRIME Tango13
2L	10636178	2L_10636178_DEL [dm3] 2L_10636178_DEL [dm6]	TG	T	5.066e^-4	0.994	INTRON CG7329
3R	11416891	3R_11416891_SNP [dm3] 3R_15591169_SNP [dm6]	C	T	5.067e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5320605	3L_5320605_SNP [dm3] 3L_5327505_SNP [dm6]	G	A	5.077e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14748955	2L_14748955_DEL [dm3] 2L_14748955_DEL [dm6]	TT	G	5.084e^-4	0.994	INTERGENIC
2L	19284551	2L_19284551_SNP [dm3] 2L_19284551_SNP [dm6]	A	G	5.092e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15082088	3L_15082088_SNP [dm3] 3L_15088988_SNP [dm6]	A	G	5.094e^-4	0.994	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	3084496	3R_3084496_SNP [dm3] 3R_7258774_SNP [dm6]	C	A	5.106e^-4	0.994	INTRON Gld
2R	13184324	2R_13184324_SNP [dm3] 2R_17296819_SNP [dm6]	A	G	5.110e^-4	0.994	INTRON mbl
2L	1532622	2L_1532622_SNP [dm3] 2L_1532622_SNP [dm6]	C	A	5.111e^-4	0.994	INTERGENIC
3L	18678453	3L_18678453_SNP [dm3] 3L_18685353_SNP [dm6]	T	A	5.122e^-4	0.994	NON_SYNONYMOUS_CODING Cyp12c1
X	14011509	X_14011509_SNP [dm3] X_14117476_SNP [dm6]	G	T	5.123e^-4	0.994	DOWNSTREAM tRNA:S7:12Eg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15210920	2L_15210920_SNP [dm3] 2L_15210920_SNP [dm6]	C	A	5.125e^-4	0.994	INTERGENIC
X	14418944	X_14418944_DEL [dm3] X_14524911_DEL [dm6]	AACTA	A	5.128e^-4	0.994	INTERGENIC
X	12550234	X_12550234_SNP [dm3] X_12656201_SNP [dm6]	C	T	5.130e^-4	0.994	INTRON CkIalpha
2R	5777267	2R_5777267_SNP [dm3] 2R_9889762_SNP [dm6]	G	A	5.136e^-4	0.994	UPSTREAM CG30008 DOWNSTREAM CG12923 INTRON CG1513
2R	1561669	2R_1561669_SNP [dm3] 2R_5674164_SNP [dm6]	A	G	5.140e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb
3R	17612528	3R_17612528_SNP [dm3] 3R_21786806_SNP [dm6]	G	A	5.144e^-4	0.994	SYNONYMOUS_CODING CASK UPSTREAM CRG
2L	12480496	2L_12480496_SNP [dm3] 2L_12480496_SNP [dm6]	A	G	5.156e^-4	0.994	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	10127657	2L_10127657_SNP [dm3] 2L_10127657_SNP [dm6]	T	C	5.159e^-4	0.994	INTRON CG44153
2R	1561666	2R_1561666_DEL [dm3] 2R_5674161_DEL [dm6]	GA	C	5.160e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb
2R	11411886	2R_11411886_SNP [dm3] 2R_15524381_SNP [dm6]	C	T	5.184e^-4	0.994	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26296500	3R_26296500_SNP [dm3] 3R_30470778_SNP [dm6]	A	G	5.189e^-4	0.994	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	10272976	2L_10272976_SNP [dm3] 2L_10272976_SNP [dm6]	A	T	5.203e^-4	0.994	UPSTREAM trk INTRON Utx
3L	12163807	3L_12163807_SNP [dm3] 3L_12170707_SNP [dm6]	T	C	5.208e^-4	0.994	INTRON Rh7
3R	12799691	3R_12799691_SNP [dm3] 3R_16973969_SNP [dm6]	C	T	5.221e^-4	0.994	INTERGENIC
X	4376049	X_4376049_SNP [dm3] X_4482016_SNP [dm6]	G	A	5.239e^-4	0.994	INTRON CR32773 & 1 other
3L	18844569	3L_18844569_SNP [dm3] 3L_18851469_SNP [dm6]	G	T	5.241e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6830801	X_6830801_DEL [dm3] X_6936768_DEL [dm6]	ACA	A	5.245e^-4	0.994	INTRON CG14431
2R	14415599	2R_14415599_SNP [dm3] 2R_18528094_SNP [dm6]	A	T	5.252e^-4	0.994	INTRON CG10924	TF binding site mE1_TFBS_Trl
2R	11510185	2R_11510185_SNP [dm3] 2R_15622680_SNP [dm6]	T	C	5.252e^-4	0.994	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26296487	3R_26296487_SNP [dm3] 3R_30470765_SNP [dm6]	T	C	5.265e^-4	0.994	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	14327974	3L_14327974_DEL [dm3] 3L_14334874_DEL [dm6]	ACCTTAGAAG	A	5.265e^-4	0.994	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1359753	3L_1359753_SNP [dm3] 3L_1359753_SNP [dm6]	C	T	5.267e^-4	0.994	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19048973	3R_19048973_SNP [dm3] 3R_23223251_SNP [dm6]	G	A	5.271e^-4	0.994	INTRON cnc
3L	9329636	3L_9329636_SNP [dm3] 3L_9336536_SNP [dm6]	T	C	5.281e^-4	0.994	INTRON PGRP-LA
3L	14366752	3L_14366752_SNP [dm3] 3L_14373652_SNP [dm6]	T	C	5.282e^-4	0.994	INTERGENIC
2R	9641354	2R_9641354_SNP [dm3] 2R_13753849_SNP [dm6]	A	C	5.284e^-4	0.994	UPSTREAM CG6280 INTERGENIC
3R	15869814	3R_15869814_SNP [dm3] 3R_20044092_SNP [dm6]	A	T	5.291e^-4	0.994	INTRON CG17193 & 2 others
2L	16966155	2L_16966155_SNP [dm3] 2L_16966155_SNP [dm6]	T	C	5.296e^-4	0.994	DOWNSTREAM CR45285 INTERGENIC
2R	13184179	2R_13184179_SNP [dm3] 2R_17296674_SNP [dm6]	T	C	5.309e^-4	0.994	INTRON mbl
2L	20704919	2L_20704919_SNP [dm3] 2L_20704919_SNP [dm6]	C	A	5.316e^-4	0.994	INTRON Hr38
X	14473270	X_14473270_SNP [dm3] X_14579237_SNP [dm6]	C	A	5.323e^-4	0.994	INTERGENIC
2L	12706775	2L_12706775_DEL [dm3] 2L_12706775_DEL [dm6]	TGGT	A	5.332e^-4	0.994	UPSTREAM CG6180 DOWNSTREAM CG15484 & 1 other INTERGENIC
3L	6428359	3L_6428359_SNP [dm3] 3L_6435259_SNP [dm6]	C	A	5.335e^-4	0.994	INTRON CG42747	TF binding site mE1_TFBS_cad
2L	4400530	2L_4400530_SNP [dm3] 2L_4400530_SNP [dm6]	T	A	5.338e^-4	0.994	UPSTREAM CG33003 DOWNSTREAM l_2_k05819 INTERGENIC
2L	17391530	2L_17391530_SNP [dm3] 2L_17391530_SNP [dm6]	G	A	5.340e^-4	0.994	INTRON CLIP-190
2L	7103049	2L_7103049_SNP [dm3] 2L_7103049_SNP [dm6]	C	G	5.352e^-4	0.994	INTRON Pvf3
2L	4101235	2L_4101235_SNP [dm3] 2L_4101235_SNP [dm6]	T	A	5.353e^-4	0.994	INTRON ed
3L	14476258	3L_14476258_SNP [dm3] 3L_14483158_SNP [dm6]	A	G	5.354e^-4	0.994	INTRON bbg
3R	11385968	3R_11385968_SNP [dm3] 3R_15560246_SNP [dm6]	T	C	5.359e^-4	0.994	INTERGENIC
2L	8515600	2L_8515600_SNP [dm3] 2L_8515600_SNP [dm6]	T	C	5.365e^-4	0.994	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18321003	3L_18321003_INS [dm3] 3L_18327903_INS [dm6]	C	CC	5.369e^-4	0.994	INTERGENIC
2L	14748887	2L_14748887_SNP [dm3] 2L_14748887_SNP [dm6]	A	C	5.371e^-4	0.994	INTERGENIC
3L	9120258	3L_9120258_SNP [dm3] 3L_9127158_SNP [dm6]	G	A	5.373e^-4	0.994	INTRON bol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15216135	2L_15216135_SNP [dm3] 2L_15216135_SNP [dm6]	A	T	5.374e^-4	0.994	UTR_3_PRIME CG43230
3R	20446684	3R_20446684_SNP [dm3] 3R_24620962_SNP [dm6]	C	T	5.381e^-4	0.994	SYNONYMOUS_CODING mld	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	5.382e^-4	0.994	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25812901	3R_25812901_SNP [dm3] 3R_29987179_SNP [dm6]	G	A	5.395e^-4	0.994	SPLICE_SITE_REGION CG7896 SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9443286	2R_9443286_SNP [dm3] 2R_13555781_SNP [dm6]	G	C	5.404e^-4	0.994	UPSTREAM link DOWNSTREAM Roe1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	2285882	3R_2285882_SNP [dm3] 3R_6460160_SNP [dm6]	T	G	5.412e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	16814693	3R_16814693_SNP [dm3] 3R_20988971_SNP [dm6]	G	A	5.413e^-4	0.994	UPSTREAM Calx INTRON Calx
X	14471726	X_14471726_SNP [dm3] X_14577693_SNP [dm6]	A	T	5.419e^-4	0.994	INTERGENIC
X	3214764	X_3214764_SNP [dm3] X_3320731_SNP [dm6]	T	G	5.419e^-4	0.994	INTRON dnc & 1 other
2R	3598968	2R_3598968_SNP [dm3] 2R_7711463_SNP [dm6]	G	T	5.420e^-4	0.994	INTRON CG1941 EXON mir-4909
3L	9143891	3L_9143891_DEL [dm3] 3L_9150791_DEL [dm6]	TG	T	5.420e^-4	0.994	UTR_3_PRIME Rdl
3L	14352552	3L_14352552_DEL [dm3] 3L_14359452_DEL [dm6]	CAAATATCTATC...	C	5.424e^-4	0.994	INTRON fz
3R	2495142	3R_2495142_SNP [dm3] 3R_6669420_SNP [dm6]	A	T	5.431e^-4	0.994	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	5.437e^-4	0.994	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	16476829	2L_16476829_SNP [dm3] 2L_16476829_SNP [dm6]	C	T	5.443e^-4	0.994	INTRON dac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7103068	2L_7103068_SNP [dm3] 2L_7103068_SNP [dm6]	A	G	5.448e^-4	0.994	INTRON Pvf3
3R	19169700	3R_19169700_SNP [dm3] 3R_23343978_SNP [dm6]	C	T	5.469e^-4	0.994	INTRON pnt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16966124	2L_16966124_SNP [dm3] 2L_16966124_SNP [dm6]	C	T	5.486e^-4	0.994	DOWNSTREAM CR45285 INTERGENIC
3R	15177009	3R_15177009_SNP [dm3] 3R_19351287_SNP [dm6]	T	A	5.488e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7214188	3R_7214188_SNP [dm3] 3R_11388466_SNP [dm6]	A	C	5.493e^-4	0.994	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2407433	2L_2407433_SNP [dm3] 2L_2407433_SNP [dm6]	C	T	5.497e^-4	0.994	INTRON VGlut
2R	9774108	2R_9774108_SNP [dm3] 2R_13886603_SNP [dm6]	T	A	5.501e^-4	0.994	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3L	15889567	3L_15889567_SNP [dm3] 3L_15896467_SNP [dm6]	A	G	5.505e^-4	0.994	INTRON pHCl
3R	26294813	3R_26294813_SNP [dm3] 3R_30469091_SNP [dm6]	T	C	5.516e^-4	0.994	INTRON PH4alphaEFB
3R	22958083	3R_22958083_SNP [dm3] 3R_27132361_SNP [dm6]	A	T	5.518e^-4	0.994	INTRON CG6051	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23247012	3R_23247012_SNP [dm3] 3R_27421290_SNP [dm6]	G	T	5.519e^-4	0.994	INTRON side
2R	16439659	2R_16439659_DEL [dm3] 2R_20552154_DEL [dm6]	CTAGAC	C	5.525e^-4	0.994	UPSTREAM CG13430 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10828843	3L_10828843_SNP [dm3] 3L_10835743_SNP [dm6]	G	A	5.526e^-4	0.994	INTERGENIC
2L	13111385	2L_13111385_SNP [dm3] 2L_13111385_SNP [dm6]	A	T	5.533e^-4	0.994	INTERGENIC
2R	13130681	2R_13130681_SNP [dm3] 2R_17243176_SNP [dm6]	A	G	5.536e^-4	0.994	INTRON mbl
2R	13130694	2R_13130694_SNP [dm3] 2R_17243189_SNP [dm6]	G	A	5.536e^-4	0.994	INTRON mbl
X	5509440	X_5509440_MNP [dm3] X_5615407_MNP [dm6]	TTCC	CAGT	5.555e^-4	0.994	NON_SYNONYMOUS_CODING CG34434 UPSTREAM CG34435
2R	13006279	2R_13006279_SNP [dm3] 2R_17118774_SNP [dm6]	T	C	5.573e^-4	0.994	UTR_3_PRIME Amy-p	TF binding site mE1_TFBS_chinmo
X	11536619	X_11536619_INS [dm3] X_11642586_INS [dm6]	G	GG	5.579e^-4	0.994	INTRON Ptp10D
3R	25477837	3R_25477837_SNP [dm3] 3R_29652115_SNP [dm6]	A	G	5.586e^-4	0.994	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11359686	3L_11359686_SNP [dm3] 3L_11366586_SNP [dm6]	T	G	5.588e^-4	0.994	DOWNSTREAM CR45036 INTERGENIC	TF binding site mE1_TFBS_inv
2R	12755511	2R_12755511_SNP [dm3] 2R_16868006_SNP [dm6]	T	A	5.593e^-4	0.994	UPSTREAM Ef1beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18545628	3L_18545628_SNP [dm3] 3L_18552528_SNP [dm6]	T	A	5.595e^-4	0.994	INTERGENIC

By genomic position
Variant impact
Gene name

Cuticul_2_Me_C27_C28 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results