DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.844e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.000425

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	17.1894	0.0002

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2880 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	19190980	3L_19190980_SNP [dm3] 3L_19197880_SNP [dm6]	C	T	2.385e^-8	0.025	INTRON fz2
3L	19190825	3L_19190825_SNP [dm3] 3L_19197725_SNP [dm6]	G	A	2.684e^-8	0.025	INTRON fz2	TF binding site mE1_TFBS_inv
3L	19190975	3L_19190975_SNP [dm3] 3L_19197875_SNP [dm6]	A	C	4.295e^-8	0.027	INTRON fz2
2L	1978904	2L_1978904_SNP [dm3] 2L_1978904_SNP [dm6]	C	T	6.397e^-7	0.227	NON_SYNONYMOUS_CODING CG15356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19199124	3L_19199124_SNP [dm3] 3L_19206024_SNP [dm6]	C	A	7.043e^-7	0.227	INTRON fz2
3L	19192537	3L_19192537_SNP [dm3] 3L_19199437_SNP [dm6]	C	T	7.266e^-7	0.227	INTRON fz2
3R	9973753	3R_9973753_SNP [dm3] 3R_14148031_SNP [dm6]	C	G	1.221e^-6	0.244	DOWNSTREAM CG14355 INTERGENIC
3L	19170261	3L_19170261_SNP [dm3] 3L_19177161_SNP [dm6]	C	T	1.238e^-6	0.244	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	19163884	3L_19163884_SNP [dm3] 3L_19170784_SNP [dm6]	A	C	1.257e^-6	0.244	UPSTREAM fz2 INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	10051720	3R_10051720_SNP [dm3] 3R_14225998_SNP [dm6]	T	C	1.302e^-6	0.244	NON_SYNONYMOUS_CODING CG9631	TF binding site mE1_TFBS_cad
3R	9999471	3R_9999471_SNP [dm3] 3R_14173749_SNP [dm6]	G	T	1.441e^-6	0.246	UTR_3_PRIME Dop1R1
2L	13699908	2L_13699908_SNP [dm3] 2L_13699908_SNP [dm6]	T	G	1.579e^-6	0.247	INTRON CG31814
2L	13097656	2L_13097656_SNP [dm3] 2L_13097656_SNP [dm6]	C	T	1.749e^-6	0.252	DOWNSTREAM CR45447 INTERGENIC
3R	9999606	3R_9999606_SNP [dm3] 3R_14173884_SNP [dm6]	G	A	2.056e^-6	0.275	UTR_3_PRIME Dop1R1
3R	6094480	3R_6094480_SNP [dm3] 3R_10268758_SNP [dm6]	G	C	2.260e^-6	0.275	INTRON CG43143	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	18602752	3R_18602752_SNP [dm3] 3R_22777030_SNP [dm6]	A	T	2.349e^-6	0.275	DOWNSTREAM Usp12-46 & 1 other INTRON CG7029
3R	9973767	3R_9973767_SNP [dm3] 3R_14148045_SNP [dm6]	T	C	2.819e^-6	0.311	DOWNSTREAM CG14355 INTERGENIC
3L	19190762	3L_19190762_SNP [dm3] 3L_19197662_SNP [dm6]	C	G	3.481e^-6	0.33	INTRON fz2	TF binding site mE1_TFBS_inv
3L	11017597	3L_11017597_SNP [dm3] 3L_11024497_SNP [dm6]	T	C	3.712e^-6	0.33	NON_SYNONYMOUS_CODING Fad2
3L	19378241	3L_19378241_INS [dm3] 3L_19385141_INS [dm6]	C	CATTTCCTAAAAAGTTA...	3.737e^-6	0.33	INTRON CG32206
3R	9986845	3R_9986845_DEL [dm3] 3R_14161123_DEL [dm6]	TTCTGGCCCT	T	3.767e^-6	0.33	UPSTREAM CG31327 INTERGENIC
3L	19192232	3L_19192232_SNP [dm3] 3L_19199132_SNP [dm6]	A	T	3.891e^-6	0.33	INTRON fz2
3R	13673639	3R_13673639_SNP [dm3] 3R_17847917_SNP [dm6]	G	A	4.200e^-6	0.33	INTRON tinc
3L	19200783	3L_19200783_SNP [dm3] 3L_19207683_SNP [dm6]	G	C	4.228e^-6	0.33	INTRON fz2	TF binding site mE1_TFBS_cad
3L	19197816	3L_19197816_SNP [dm3] 3L_19204716_SNP [dm6]	A	T	4.622e^-6	0.347	INTRON fz2
3L	19186522	3L_19186522_SNP [dm3] 3L_19193422_SNP [dm6]	C	A	5.154e^-6	0.356	INTRON fz2
2L	13712254	2L_13712254_SNP [dm3] 2L_13712254_SNP [dm6]	A	T	5.394e^-6	0.356	INTRON CG31814
3L	19546419	3L_19546419_SNP [dm3] 3L_19553319_SNP [dm6]	A	T	5.646e^-6	0.356	INTRON CG9300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3L	19197381	3L_19197381_SNP [dm3] 3L_19204281_SNP [dm6]	G	C	5.841e^-6	0.356	INTRON fz2
3L	19199391	3L_19199391_SNP [dm3] 3L_19206291_SNP [dm6]	G	A	6.489e^-6	0.356	INTRON fz2
2L	6153986	2L_6153986_SNP [dm3] 2L_6153986_SNP [dm6]	A	T	6.670e^-6	0.356	UTR_3_PRIME CG31639 DOWNSTREAM Muc26B	TF binding site mE1_TFBS_HSA
3R	5276560	3R_5276560_SNP [dm3] 3R_9450838_SNP [dm6]	C	G	6.747e^-6	0.356	UTR_3_PRIME ps
2L	6153982	2L_6153982_SNP [dm3] 2L_6153982_SNP [dm6]	G	A	6.857e^-6	0.356	UTR_3_PRIME CG31639 DOWNSTREAM Muc26B	TF binding site mE1_TFBS_HSA
2L	6154000	2L_6154000_SNP [dm3] 2L_6154000_SNP [dm6]	C	T	6.857e^-6	0.356	UTR_3_PRIME CG31639 DOWNSTREAM Muc26B	TF binding site mE1_TFBS_HSA
3R	5278030	3R_5278030_DEL [dm3] 3R_9452308_DEL [dm6]	AAAAA	A	6.932e^-6	0.356	UTR_3_PRIME ps
2R	11239579	2R_11239579_INS [dm3] 2R_15352074_INS [dm6]	A	AACCA	6.959e^-6	0.356	INTRON unc-5	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	13900225	3L_13900225_SNP [dm3] 3L_13907125_SNP [dm6]	T	A	7.090e^-6	0.356	UTR_3_PRIME Rgl
3R	5276343	3R_5276343_SNP [dm3] 3R_9450621_SNP [dm6]	G	A	7.324e^-6	0.356	UTR_3_PRIME ps
2R	10631551	2R_10631551_SNP [dm3] 2R_14744046_SNP [dm6]	G	T	7.411e^-6	0.356	UTR_5_PRIME CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2544334	X_2544334_SNP [dm3] X_2650301_SNP [dm6]	T	G	8.066e^-6	0.372	INTRON sgg
2L	10355033	2L_10355033_SNP [dm3] 2L_10355033_SNP [dm6]	A	C	8.140e^-6	0.372	INTRON CG5367
3L	19543144	3L_19543144_SNP [dm3] 3L_19550044_SNP [dm6]	T	G	8.507e^-6	0.373	NON_SYNONYMOUS_CODING l_3_76BDr
3L	19185491	3L_19185491_SNP [dm3] 3L_19192391_SNP [dm6]	T	C	9.023e^-6	0.373	INTRON fz2
3R	10051685	3R_10051685_SNP [dm3] 3R_14225963_SNP [dm6]	T	G	9.231e^-6	0.373	SYNONYMOUS_CODING CG9631	TF binding site mE1_TFBS_cad
3R	5275968	3R_5275968_SNP [dm3] 3R_9450246_SNP [dm6]	G	A	9.481e^-6	0.373	UTR_3_PRIME ps DOWNSTREAM ps
3L	19489863	3L_19489863_SNP [dm3] 3L_19496763_SNP [dm6]	G	A	9.746e^-6	0.373	START_GAINED CG9449 UTR_5_PRIME CG9449 UPSTREAM CG9449
3R	10187548	3R_10187548_SNP [dm3] 3R_14361826_SNP [dm6]	G	T	9.799e^-6	0.373	UPSTREAM CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13490649	2L_13490649_SNP [dm3] 2L_13490649_SNP [dm6]	A	G	1.010e^-5	0.373	INTRON CG42784
3R	5276361	3R_5276361_SNP [dm3] 3R_9450639_SNP [dm6]	G	T	1.041e^-5	0.373	UTR_3_PRIME ps
3L	19194617	3L_19194617_SNP [dm3] 3L_19201517_SNP [dm6]	C	T	1.062e^-5	0.373	INTRON fz2
3L	19368784	3L_19368784_SNP [dm3] 3L_19375684_SNP [dm6]	A	G	1.064e^-5	0.373	INTRON CG32206
2L	6775324	2L_6775324_DEL [dm3] 2L_6775324_DEL [dm6]	CG	C	1.075e^-5	0.373	UPSTREAM CG17378 INTRON CG17378
3L	19192304	3L_19192304_SNP [dm3] 3L_19199204_SNP [dm6]	C	G	1.124e^-5	0.373	INTRON fz2
3R	26258254	3R_26258254_SNP [dm3] 3R_30432532_SNP [dm6]	C	T	1.171e^-5	0.373	SYNONYMOUS_CODING CG15534	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19177520	3L_19177520_SNP [dm3] 3L_19184420_SNP [dm6]	G	A	1.173e^-5	0.373	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	5432884	2L_5432884_SNP [dm3] 2L_5432884_SNP [dm6]	C	A	1.182e^-5	0.373	DOWNSTREAM CR43713 & 1 other EXON CR43714
3L	19189176	3L_19189176_DEL [dm3] 3L_19196076_DEL [dm6]	GA	C	1.211e^-5	0.373	INTRON fz2
3L	19172420	3L_19172420_SNP [dm3] 3L_19179320_SNP [dm6]	G	T	1.235e^-5	0.373	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19179006	3L_19179006_SNP [dm3] 3L_19185906_SNP [dm6]	T	C	1.237e^-5	0.373	INTRON fz2
3R	2399129	3R_2399129_SNP [dm3] 3R_6573407_SNP [dm6]	G	T	1.246e^-5	0.373	INTRON dpr11
2L	280607	2L_280607_SNP [dm3] 2L_280607_SNP [dm6]	G	A	1.267e^-5	0.373	NON_SYNONYMOUS_CODING smo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	22916337	3R_22916337_SNP [dm3] 3R_27090615_SNP [dm6]	T	G	1.276e^-5	0.373	INTRON Cpr97Eb
3L	19547973	3L_19547973_DEL [dm3] 3L_19554873_DEL [dm6]	ATGGAATCCATATACGGCGA...	A	1.298e^-5	0.373	DOWNSTREAM CR44677 & 1 other INTERGENIC
3R	13673426	3R_13673426_INS [dm3] 3R_17847704_INS [dm6]	A	AT	1.313e^-5	0.373	INTRON tinc
3R	10608804	3R_10608804_SNP [dm3] 3R_14783082_SNP [dm6]	C	T	1.314e^-5	0.373	INTRON jvl
3R	4949587	3R_4949587_SNP [dm3] 3R_9123865_SNP [dm6]	C	T	1.334e^-5	0.373	INTRON pum
3L	21421813	3L_21421813_SNP [dm3] 3L_21428713_SNP [dm6]	T	A	1.342e^-5	0.373	INTRON barc & 1 other
3L	15225115	3L_15225115_SNP [dm3] 3L_15232015_SNP [dm6]	C	T	1.352e^-5	0.373	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19185476	3L_19185476_SNP [dm3] 3L_19192376_SNP [dm6]	G	A	1.424e^-5	0.387	INTRON fz2
3R	10071085	3R_10071085_INS [dm3] 3R_14245363_INS [dm6]	T	TTC	1.502e^-5	0.402	UPSTREAM CG43291
3L	19163440	3L_19163440_SNP [dm3] 3L_19170340_SNP [dm6]	A	G	1.577e^-5	0.413	UTR_5_PRIME fz2 INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6812410	2R_6812410_SNP [dm3] 2R_10924905_SNP [dm6]	C	T	1.613e^-5	0.413	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19169460	3L_19169460_SNP [dm3] 3L_19176360_SNP [dm6]	G	T	1.636e^-5	0.413	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	9721734	3R_9721734_SNP [dm3] 3R_13896012_SNP [dm6]	A	C	1.645e^-5	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	17082320	2R_17082320_DEL [dm3] 2R_21194815_DEL [dm6]	GGGTGGTAATG...	G	1.660e^-5	0.413	INTRON Lapsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	19544740	3L_19544740_SNP [dm3] 3L_19551640_SNP [dm6]	T	A	1.757e^-5	0.413	NON_SYNONYMOUS_CODING l_3_76BDr UPSTREAM CG9300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	3370557	3R_3370557_SNP [dm3] 3R_7544835_SNP [dm6]	G	A	1.771e^-5	0.413	SYNONYMOUS_CODING alpha-Est2 DOWNSTREAM alpha-Est1
3L	19167213	3L_19167213_SNP [dm3] 3L_19174113_SNP [dm6]	A	C	1.812e^-5	0.413	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9973416	3R_9973416_SNP [dm3] 3R_14147694_SNP [dm6]	A	T	1.822e^-5	0.413	DOWNSTREAM CG14355 INTERGENIC
2L	16379723	2L_16379723_SNP [dm3] 2L_16379723_SNP [dm6]	G	C	1.825e^-5	0.413	INTERGENIC
3L	19179367	3L_19179367_SNP [dm3] 3L_19186267_SNP [dm6]	T	A	1.838e^-5	0.413	INTRON fz2
3R	18974847	3R_18974847_SNP [dm3] 3R_23149125_SNP [dm6]	T	C	1.849e^-5	0.413	DOWNSTREAM unk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19377491	3L_19377491_SNP [dm3] 3L_19384391_SNP [dm6]	C	T	1.866e^-5	0.413	INTRON CG32206
3R	10035790	3R_10035790_SNP [dm3] 3R_14210068_SNP [dm6]	A	C	1.882e^-5	0.413	INTRON Dop1R1
3L	14481725	3L_14481725_SNP [dm3] 3L_14488625_SNP [dm6]	A	T	1.903e^-5	0.413	INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9975155	3R_9975155_SNP [dm3] 3R_14149433_SNP [dm6]	A	T	1.915e^-5	0.413	SYNONYMOUS_CODING CG14355
3R	9974141	3R_9974141_SNP [dm3] 3R_14148419_SNP [dm6]	A	G	1.916e^-5	0.413	DOWNSTREAM CG14355 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4957594	3R_4957594_SNP [dm3] 3R_9131872_SNP [dm6]	A	G	2.005e^-5	0.422	INTRON pum	TF binding site mE1_TFBS_cad
2R	5715478	2R_5715478_SNP [dm3] 2R_9827973_SNP [dm6]	A	G	2.034e^-5	0.422	UPSTREAM dila DOWNSTREAM hebe INTERGENIC
3R	4958915	3R_4958915_SNP [dm3] 3R_9133193_SNP [dm6]	A	T	2.068e^-5	0.422	INTRON pum
3R	13429439	3R_13429439_SNP [dm3] 3R_17603717_SNP [dm6]	T	A	2.073e^-5	0.422	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8131537	3R_8131537_SNP [dm3] 3R_12305815_SNP [dm6]	T	C	2.091e^-5	0.422	INTERGENIC
2L	3006337	2L_3006337_SNP [dm3] 2L_3006337_SNP [dm6]	G	A	2.113e^-5	0.422	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9975641	3R_9975641_SNP [dm3] 3R_14149919_SNP [dm6]	G	C	2.134e^-5	0.422	SYNONYMOUS_CODING CG14355
2L	2929884	2L_2929884_SNP [dm3] 2L_2929884_SNP [dm6]	T	C	2.135e^-5	0.422	INTRON lilli
3L	19155897	3L_19155897_SNP [dm3] 3L_19162797_SNP [dm6]	A	T	2.220e^-5	0.434	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	10035925	3R_10035925_SNP [dm3] 3R_14210203_SNP [dm6]	C	T	2.299e^-5	0.435	INTRON Dop1R1
2L	2928746	2L_2928746_SNP [dm3] 2L_2928746_SNP [dm6]	A	T	2.309e^-5	0.435	INTRON lilli
3L	19543679	3L_19543679_SNP [dm3] 3L_19550579_SNP [dm6]	C	T	2.313e^-5	0.435	SYNONYMOUS_CODING l_3_76BDr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12596387	2L_12596387_SNP [dm3] 2L_12596387_SNP [dm6]	T	A	2.317e^-5	0.435	INTRON nub
2L	14341027	2L_14341027_SNP [dm3] 2L_14341027_SNP [dm6]	G	A	2.376e^-5	0.44	UPSTREAM CG33090 DOWNSTREAM CG15286 INTRON CG33090
3L	19171790	3L_19171790_SNP [dm3] 3L_19178690_SNP [dm6]	T	C	2.420e^-5	0.44	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	9970073	3R_9970073_SNP [dm3] 3R_14144351_SNP [dm6]	T	G	2.448e^-5	0.44	INTERGENIC
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	2.503e^-5	0.44	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19541198	3L_19541198_SNP [dm3] 3L_19548098_SNP [dm6]	T	C	2.515e^-5	0.44	DOWNSTREAM Rcd7 INTRON l_3_76BDr
3R	9966511	3R_9966511_SNP [dm3] 3R_14140789_SNP [dm6]	G	T	2.536e^-5	0.44	INTERGENIC
2L	13711378	2L_13711378_SNP [dm3] 2L_13711378_SNP [dm6]	A	T	2.537e^-5	0.44	DOWNSTREAM CG7311 INTRON CG31814
2R	10537639	2R_10537639_SNP [dm3] 2R_14650134_SNP [dm6]	G	A	2.541e^-5	0.44	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1255403	3L_1255403_DEL [dm3] 3L_1255403_DEL [dm6]	AA	G	2.557e^-5	0.44	INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
3L	20960321	3L_20960321_SNP [dm3] 3L_20967221_SNP [dm6]	A	G	2.655e^-5	0.453	SYNONYMOUS_CODING CG33287 UPSTREAM CG12983
X	15167608	X_15167608_SNP [dm3] X_15273575_SNP [dm6]	G	A	2.707e^-5	0.457	INTERGENIC
3L	9870558	3L_9870558_SNP [dm3] 3L_9877458_SNP [dm6]	C	G	2.740e^-5	0.459	INTERGENIC
3L	19200747	3L_19200747_SNP [dm3] 3L_19207647_SNP [dm6]	A	G	2.826e^-5	0.469	INTRON fz2	TF binding site mE1_TFBS_cad
3R	26700011	3R_26700011_SNP [dm3] 3R_30874289_SNP [dm6]	T	C	2.926e^-5	0.481	DOWNSTREAM CG15546 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13429339	3R_13429339_DEL [dm3] 3R_17603617_DEL [dm6]	AG	C	2.987e^-5	0.484	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9970364	3R_9970364_SNP [dm3] 3R_14144642_SNP [dm6]	A	T	2.993e^-5	0.484	INTERGENIC
3R	5234042	3R_5234042_DEL [dm3] 3R_9408320_DEL [dm6]	GTTTAGGTTTATG...	G	3.026e^-5	0.485	UPSTREAM CG44261 DOWNSTREAM betaTub85D & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
3L	19203015	3L_19203015_SNP [dm3] 3L_19209915_SNP [dm6]	T	A	3.077e^-5	0.488	INTRON fz2
3L	19171291	3L_19171291_SNP [dm3] 3L_19178191_SNP [dm6]	C	T	3.112e^-5	0.488	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19377499	3L_19377499_SNP [dm3] 3L_19384399_SNP [dm6]	A	G	3.201e^-5	0.488	INTRON CG32206
3R	10056044	3R_10056044_SNP [dm3] 3R_14230322_SNP [dm6]	T	G	3.206e^-5	0.488	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8133825	3R_8133825_SNP [dm3] 3R_12308103_SNP [dm6]	A	T	3.216e^-5	0.488	INTERGENIC
2L	5428277	2L_5428277_SNP [dm3] 2L_5428277_SNP [dm6]	C	T	3.234e^-5	0.488	INTERGENIC
X	8530718	X_8530718_SNP [dm3] X_8636685_SNP [dm6]	C	A	3.266e^-5	0.488	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	4978938	3R_4978938_SNP [dm3] 3R_9153216_SNP [dm6]	C	T	3.271e^-5	0.488	INTRON pum
X	15995070	X_15995070_SNP [dm3] X_16101037_SNP [dm6]	T	G	3.296e^-5	0.488	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8354714	2L_8354714_SNP [dm3] 2L_8354714_SNP [dm6]	T	C	3.335e^-5	0.488	NON_SYNONYMOUS_CODING Mur29B DOWNSTREAM CG7627
3R	5212172	3R_5212172_SNP [dm3] 3R_9386450_SNP [dm6]	C	T	3.339e^-5	0.488	INTRON FER	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1091889	2L_1091889_SNP [dm3] 2L_1091889_SNP [dm6]	T	C	3.367e^-5	0.488	INTRON CG4629
X	15995067	X_15995067_SNP [dm3] X_16101034_SNP [dm6]	A	G	3.409e^-5	0.488	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12964901	3L_12964901_SNP [dm3] 3L_12971801_SNP [dm6]	C	T	3.412e^-5	0.488	SYNONYMOUS_CODING CG10748 UPSTREAM CG10749	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14359678	3R_14359678_SNP [dm3] 3R_18533956_SNP [dm6]	C	A	3.527e^-5	0.499	INTRON fru
3L	12218345	3L_12218345_SNP [dm3] 3L_12225245_SNP [dm6]	G	A	3.558e^-5	0.499	UPSTREAM app INTRON app
3R	26256786	3R_26256786_SNP [dm3] 3R_30431064_SNP [dm6]	A	G	3.584e^-5	0.499	UPSTREAM CG15534 INTRON CG15533	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad
3L	19200170	3L_19200170_SNP [dm3] 3L_19207070_SNP [dm6]	G	A	3.596e^-5	0.499	INTRON fz2	TF binding site mE1_TFBS_cad
3L	6340240	3L_6340240_SNP [dm3] 3L_6347140_SNP [dm6]	G	C	3.660e^-5	0.499	INTRON CG13300
3R	10226284	3R_10226284_SNP [dm3] 3R_14400562_SNP [dm6]	G	A	3.670e^-5	0.499	INTRON cv-c
3R	4975092	3R_4975092_SNP [dm3] 3R_9149370_SNP [dm6]	T	C	3.674e^-5	0.499	INTRON pum
3R	9981940	3R_9981940_SNP [dm3] 3R_14156218_SNP [dm6]	C	T	3.759e^-5	0.507	SYNONYMOUS_CODING CG31533
3R	9785485	3R_9785485_SNP [dm3] 3R_13959763_SNP [dm6]	T	C	3.807e^-5	0.507	SYNONYMOUS_CODING Ipp DOWNSTREAM CG9925
2L	9672350	2L_9672350_SNP [dm3] 2L_9672350_SNP [dm6]	T	G	3.865e^-5	0.507	INTERGENIC
2L	13982651	2L_13982651_SNP [dm3] 2L_13982651_SNP [dm6]	T	C	3.889e^-5	0.507	UTR_3_PRIME NimC2 DOWNSTREAM rk	TF binding site mE1_TFBS_cad
2L	14784018	2L_14784018_SNP [dm3] 2L_14784018_SNP [dm6]	C	T	3.916e^-5	0.507	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18216250	3L_18216250_SNP [dm3] 3L_18223150_SNP [dm6]	T	C	3.933e^-5	0.507	INTERGENIC
3L	12880974	3L_12880974_SNP [dm3] 3L_12887874_SNP [dm6]	A	G	3.940e^-5	0.507	SYNONYMOUS_CODING CG14120
3L	17411273	3L_17411273_SNP [dm3] 3L_17418173_SNP [dm6]	T	C	3.946e^-5	0.507	INTRON blot
3R	21480422	3R_21480422_SNP [dm3] 3R_25654700_SNP [dm6]	G	A	3.976e^-5	0.507	SYNONYMOUS_CODING Tnks	TF binding site mE1_TFBS_chinmo
2R	14805308	2R_14805308_SNP [dm3] 2R_18917803_SNP [dm6]	C	T	4.038e^-5	0.507	INTRON sano
3R	9810751	3R_9810751_SNP [dm3] 3R_13985029_SNP [dm6]	C	G	4.058e^-5	0.507	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	10238306	X_10238306_SNP [dm3] X_10344273_SNP [dm6]	T	C	4.081e^-5	0.507	INTRON CG43740	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	7520590	2L_7520590_SNP [dm3] 2L_7520590_SNP [dm6]	T	C	4.200e^-5	0.507	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4994364	3R_4994364_INS [dm3] 3R_9168642_INS [dm6]	A	ATGA	4.227e^-5	0.507	INTRON pum
3R	10226219	3R_10226219_SNP [dm3] 3R_14400497_SNP [dm6]	C	T	4.287e^-5	0.507	INTRON cv-c
3L	21396462	3L_21396462_DEL [dm3] 3L_21403362_DEL [dm6]	GA	G	4.308e^-5	0.507	INTRON rgn
3R	7481526	3R_7481526_SNP [dm3] 3R_11655804_SNP [dm6]	C	T	4.317e^-5	0.507	UPSTREAM CG42327 DOWNSTREAM Elp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	19159311	3L_19159311_SNP [dm3] 3L_19166211_SNP [dm6]	G	T	4.317e^-5	0.507	INTRON fz2	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	10036498	3R_10036498_SNP [dm3] 3R_14210776_SNP [dm6]	C	T	4.318e^-5	0.507	INTRON Dop1R1
3L	5949474	3L_5949474_INS [dm3] 3L_5956374_INS [dm6]	T	TTT	4.352e^-5	0.507	INTERGENIC
2R	17875530	2R_17875530_SNP [dm3] 2R_21988025_SNP [dm6]	G	A	4.404e^-5	0.507	UTR_3_PRIME CG34370
3L	16816371	3L_16816371_SNP [dm3] 3L_16823271_SNP [dm6]	G	A	4.420e^-5	0.507	INTRON CG13024	TF binding site mE1_TFBS_inv
3R	2360122	3R_2360122_DEL [dm3] 3R_6534400_DEL [dm6]	AT	C	4.421e^-5	0.507	INTRON dpr11	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	19174574	3L_19174574_SNP [dm3] 3L_19181474_SNP [dm6]	C	T	4.434e^-5	0.507	INTRON fz2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19171029	3L_19171029_SNP [dm3] 3L_19177929_SNP [dm6]	A	T	4.489e^-5	0.507	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13239982	3L_13239982_SNP [dm3] 3L_13246882_SNP [dm6]	C	T	4.517e^-5	0.507	UTR_3_PRIME CG32119 INTRON caps
3L	19450560	3L_19450560_INS [dm3] 3L_19457460_INS [dm6]	T	TA	4.548e^-5	0.507	INTERGENIC	transposable element FlyBase
3R	4984607	3R_4984607_SNP [dm3] 3R_9158885_SNP [dm6]	A	G	4.556e^-5	0.507	UPSTREAM pum INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19548350	3L_19548350_SNP [dm3] 3L_19555250_SNP [dm6]	C	G	4.565e^-5	0.507	DOWNSTREAM CR44677 & 1 other INTERGENIC
3L	10823998	3L_10823998_SNP [dm3] 3L_10830898_SNP [dm6]	G	A	4.660e^-5	0.507	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	7481199	3R_7481199_SNP [dm3] 3R_11655477_SNP [dm6]	A	C	4.695e^-5	0.507	UTR_3_PRIME Elp1 UPSTREAM CG42327 DOWNSTREAM Elp1
2L	11415231	2L_11415231_SNP [dm3] 2L_11415231_SNP [dm6]	A	T	4.735e^-5	0.507	INTERGENIC
3L	2399288	3L_2399288_SNP [dm3] 3L_2399288_SNP [dm6]	C	T	4.738e^-5	0.507	INTRON CG45186
3R	4959503	3R_4959503_SNP [dm3] 3R_9133781_SNP [dm6]	C	A	4.800e^-5	0.507	INTRON pum
2L	5749088	2L_5749088_SNP [dm3] 2L_5749088_SNP [dm6]	C	G	4.801e^-5	0.507	INTRON CG11030	TF binding site BDTNP1_TFBS_twi
3R	8379725	3R_8379725_SNP [dm3] 3R_12554003_SNP [dm6]	T	A	4.811e^-5	0.507	INTRON Octbeta2R
2L	6964492	2L_6964492_SNP [dm3] 2L_6964492_SNP [dm6]	A	C	4.814e^-5	0.507	UTR_5_PRIME Coprox UPSTREAM sip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	19171911	3L_19171911_SNP [dm3] 3L_19178811_SNP [dm6]	A	G	4.833e^-5	0.507	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2628470	3R_2628470_SNP [dm3] 3R_6802748_SNP [dm6]	C	T	4.848e^-5	0.507	DOWNSTREAM Dfd INTERGENIC
3R	5312585	3R_5312585_SNP [dm3] 3R_9486863_SNP [dm6]	T	C	4.849e^-5	0.507	UTR_5_PRIME CG16779
2R	11239748	2R_11239748_SNP [dm3] 2R_15352243_SNP [dm6]	C	A	4.985e^-5	0.507	INTRON unc-5	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	4649466	2L_4649466_SNP [dm3] 2L_4649466_SNP [dm6]	C	T	4.994e^-5	0.507	INTERGENIC
X	2171593	X_2171593_SNP [dm3] X_2277560_SNP [dm6]	G	T	5.005e^-5	0.507	NON_SYNONYMOUS_CODING Vml DOWNSTREAM CG2865	TF binding site mE1_TFBS_sens
3L	10290946	3L_10290946_SNP [dm3] 3L_10297846_SNP [dm6]	G	C	5.018e^-5	0.507	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	19180493	3L_19180493_SNP [dm3] 3L_19187393_SNP [dm6]	A	C	5.033e^-5	0.507	INTRON fz2
3R	10165125	3R_10165125_SNP [dm3] 3R_14339403_SNP [dm6]	A	C	5.050e^-5	0.507	INTRON NK7.1
X	11566147	X_11566147_SNP [dm3] X_11672114_SNP [dm6]	C	T	5.050e^-5	0.507	INTRON Ptp10D
3R	20053017	3R_20053017_SNP [dm3] 3R_24227295_SNP [dm6]	A	T	5.061e^-5	0.507	NON_SYNONYMOUS_CODING CG13609 UPSTREAM Spps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	10071082	3R_10071082_SNP [dm3] 3R_14245360_SNP [dm6]	G	C	5.150e^-5	0.507	NON_SYNONYMOUS_CODING CG9616 UPSTREAM CG43291
3R	10071084	3R_10071084_SNP [dm3] 3R_14245362_SNP [dm6]	A	C	5.150e^-5	0.507	STOP_GAINED CG9616 UPSTREAM CG43291
2L	278178	2L_278178_SNP [dm3] 2L_278178_SNP [dm6]	C	G	5.205e^-5	0.507	NON_SYNONYMOUS_CODING smo UTR_5_PRIME CG17078 UPSTREAM CG17078	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15901643	X_15901643_SNP [dm3] X_16007610_SNP [dm6]	T	C	5.215e^-5	0.507	SYNONYMOUS_CODING CG12698
3R	26256760	3R_26256760_SNP [dm3] 3R_30431038_SNP [dm6]	T	A	5.231e^-5	0.507	INTRON CG15533	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad
X	5386818	X_5386818_SNP [dm3] X_5492785_SNP [dm6]	T	C	5.232e^-5	0.507	UTR_3_PRIME SPR DOWNSTREAM frma
2R	19018931	2R_19018931_SNP [dm3] 2R_23131408_SNP [dm6]	C	T	5.238e^-5	0.507	INTERGENIC
3R	10071513	3R_10071513_SNP [dm3] 3R_14245791_SNP [dm6]	C	A	5.257e^-5	0.507	UPSTREAM CG9616 INTERGENIC
3R	9727781	3R_9727781_SNP [dm3] 3R_13902059_SNP [dm6]	A	G	5.288e^-5	0.507	UTR_5_PRIME ems	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4953240	3R_4953240_SNP [dm3] 3R_9127518_SNP [dm6]	G	A	5.295e^-5	0.507	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19548291	3L_19548291_SNP [dm3] 3L_19555191_SNP [dm6]	A	C	5.341e^-5	0.507	DOWNSTREAM CR44677 & 1 other INTERGENIC
2R	6492506	2R_6492506_SNP [dm3] 2R_10605001_SNP [dm6]	C	G	5.354e^-5	0.507	INTRON psq	TF binding site mE1_TFBS_HSA
2L	9672196	2L_9672196_INS [dm3] 2L_9672196_INS [dm6]	A	ACATAAATAGTA...	5.402e^-5	0.508	INTERGENIC
3L	18229034	3L_18229034_SNP [dm3] 3L_18235934_SNP [dm6]	A	G	5.425e^-5	0.508	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19200092	3L_19200092_SNP [dm3] 3L_19206992_SNP [dm6]	A	C	5.477e^-5	0.508	INTRON fz2	TF binding site mE1_TFBS_cad
2L	10703024	2L_10703024_SNP [dm3] 2L_10703024_SNP [dm6]	T	A	5.484e^-5	0.508	UPSTREAM CG6415 INTRON Lip2
3L	3649105	3L_3649105_SNP [dm3] 3L_3649105_SNP [dm6]	A	T	5.507e^-5	0.508	INTRON dar1
2R	10631550	2R_10631550_SNP [dm3] 2R_14744045_SNP [dm6]	G	T	5.531e^-5	0.508	UTR_5_PRIME CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10548749	2R_10548749_SNP [dm3] 2R_14661244_SNP [dm6]	T	C	5.556e^-5	0.508	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17165589	X_17165589_SNP [dm3] X_17271556_SNP [dm6]	C	T	5.660e^-5	0.512	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7267921	2L_7267921_SNP [dm3] 2L_7267921_SNP [dm6]	T	C	5.660e^-5	0.512	INTRON Wnt4	TF binding site mE1_TFBS_cad
3L	19541459	3L_19541459_SNP [dm3] 3L_19548359_SNP [dm6]	A	G	5.682e^-5	0.512	INTRON l_3_76BDr
3R	18974950	3R_18974950_SNP [dm3] 3R_23149228_SNP [dm6]	T	G	5.742e^-5	0.515	DOWNSTREAM unk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18321581	3R_18321581_SNP [dm3] 3R_22495859_SNP [dm6]	C	T	5.839e^-5	0.522	INTERGENIC
2L	7041011	2L_7041011_SNP [dm3] 2L_7041011_SNP [dm6]	A	T	5.907e^-5	0.525	SYNONYMOUS_CODING milt
2R	10637869	2R_10637869_SNP [dm3] 2R_14750364_SNP [dm6]	A	T	5.966e^-5	0.528	UTR_3_PRIME Rpn6 DOWNSTREAM AttB
X	17166907	X_17166907_SNP [dm3] X_17272874_SNP [dm6]	T	G	6.056e^-5	0.533	INTRON f	TF binding site mE1_TFBS_cad
X	10853228	X_10853228_SNP [dm3] X_10959195_SNP [dm6]	T	C	6.118e^-5	0.536	INTRON Myo10A
3R	4949582	3R_4949582_SNP [dm3] 3R_9123860_SNP [dm6]	T	C	6.164e^-5	0.537	INTRON pum
2L	1071837	2L_1071837_SNP [dm3] 2L_1071837_SNP [dm6]	C	G	6.205e^-5	0.537	INTRON S
3R	8384256	3R_8384256_SNP [dm3] 3R_12558534_SNP [dm6]	T	C	6.238e^-5	0.537	INTRON Octbeta2R
3L	16902613	3L_16902613_SNP [dm3] 3L_16909513_SNP [dm6]	A	G	6.282e^-5	0.537	INTRON Lmpt
X	20796671	X_20796671_INS [dm3] X_20925644_INS [dm6]	T	TT	6.290e^-5	0.537	UPSTREAM shakB INTRON shakB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14553468	3L_14553468_SNP [dm3] 3L_14560368_SNP [dm6]	G	T	6.302e^-5	0.537	SYNONYMOUS_CODING Lk INTRON CG34039 EXON CR44843	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	17166384	X_17166384_SNP [dm3] X_17272351_SNP [dm6]	T	C	6.352e^-5	0.539	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1079041	2L_1079041_SNP [dm3] 2L_1079041_SNP [dm6]	T	G	6.390e^-5	0.54	SYNONYMOUS_CODING ast	TF binding site mE1_TFBS_sens
3L	11017325	3L_11017325_SNP [dm3] 3L_11024225_SNP [dm6]	C	G	6.463e^-5	0.543	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	4438165	3R_4438165_SNP [dm3] 3R_8612443_SNP [dm6]	A	G	6.482e^-5	0.543	INTRON 5-HT2B
3R	2400448	3R_2400448_SNP [dm3] 3R_6574726_SNP [dm6]	C	A	6.582e^-5	0.549	INTRON dpr11
2R	10289956	2R_10289956_SNP [dm3] 2R_14402451_SNP [dm6]	T	G	6.616e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_inv
2L	19145313	2L_19145313_SNP [dm3] 2L_19145313_SNP [dm6]	G	C	6.769e^-5	0.558	INTRON brat
3R	23633048	3R_23633048_SNP [dm3] 3R_27807326_SNP [dm6]	G	A	6.790e^-5	0.558	INTRON CG34353
3L	4316537	3L_4316537_SNP [dm3] 3L_4316537_SNP [dm6]	A	T	6.810e^-5	0.558	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_HSA
3R	19831783	3R_19831783_SNP [dm3] 3R_24006061_SNP [dm6]	A	G	6.845e^-5	0.558	INTRON KrT95D	TF binding site BDTNP1_TFBS_dl
3R	10226039	3R_10226039_SNP [dm3] 3R_14400317_SNP [dm6]	A	G	6.913e^-5	0.56	INTRON cv-c	TF binding site mE1_TFBS_Trl
2L	8384629	2L_8384629_SNP [dm3] 2L_8384629_SNP [dm6]	C	T	6.943e^-5	0.56	UTR_5_PRIME CG13384 UPSTREAM l_2_k12914 DOWNSTREAM Rcd4 INTRON CG13384	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	7075402	2L_7075402_SNP [dm3] 2L_7075402_SNP [dm6]	A	C	6.975e^-5	0.56	INTRON Pvf2	TF binding site mE1_TFBS_cad
3R	2348384	3R_2348384_SNP [dm3] 3R_6522662_SNP [dm6]	T	A	7.110e^-5	0.56	INTERGENIC
3R	10248243	3R_10248243_SNP [dm3] 3R_14422521_SNP [dm6]	C	T	7.115e^-5	0.56	DOWNSTREAM natalisin INTRON cv-c EXON CR44176
3L	19378463	3L_19378463_INS [dm3] 3L_19385363_INS [dm6]	C	CACA	7.159e^-5	0.56	INTRON CG32206
3R	13429298	3R_13429298_DEL [dm3] 3R_17603576_DEL [dm6]	TA	T	7.160e^-5	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9990981	3R_9990981_SNP [dm3] 3R_14165259_SNP [dm6]	C	T	7.176e^-5	0.56	DOWNSTREAM Dop1R1 INTERGENIC
X	15995072	X_15995072_SNP [dm3] X_16101039_SNP [dm6]	A	G	7.182e^-5	0.56	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3005541	2L_3005541_SNP [dm3] 2L_3005541_SNP [dm6]	A	G	7.246e^-5	0.56	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5414347	3R_5414347_SNP [dm3] 3R_9588625_SNP [dm6]	A	G	7.278e^-5	0.56	SYNONYMOUS_CODING P58IPK DOWNSTREAM bocksbeutel	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5273881	3R_5273881_SNP [dm3] 3R_9448159_SNP [dm6]	T	C	7.300e^-5	0.56	UTR_3_PRIME ps
3R	16618705	3R_16618705_SNP [dm3] 3R_20792983_SNP [dm6]	T	A	7.376e^-5	0.56	INTRON Syp	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	15005216	2L_15005216_INS [dm3] 2L_15005216_INS [dm6]	C	CCCCGCC	7.377e^-5	0.56	UPSTREAM dyn-p25 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7527155	2R_7527155_DEL [dm3] 2R_11639650_DEL [dm6]	CACACAC	C	7.443e^-5	0.56	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	10853236	X_10853236_SNP [dm3] X_10959203_SNP [dm6]	A	T	7.488e^-5	0.56	INTRON Myo10A
3R	3742507	3R_3742507_SNP [dm3] 3R_7916785_SNP [dm6]	G	A	7.512e^-5	0.56	UTR_3_PRIME CG10445 DOWNSTREAM CG10445 & 1 other
3R	13584279	3R_13584279_SNP [dm3] 3R_17758557_SNP [dm6]	T	A	7.520e^-5	0.56	INTRON TyrR
3R	10158727	3R_10158727_SNP [dm3] 3R_14333005_SNP [dm6]	A	C	7.638e^-5	0.56	INTRON NK7.1
3R	13363371	3R_13363371_SNP [dm3] 3R_17537649_SNP [dm6]	G	A	7.695e^-5	0.56	SYNONYMOUS_CODING l_3_07882 DOWNSTREAM P5cr-2	TF binding site mE1_TFBS_sens
2L	7416938	2L_7416938_SNP [dm3] 2L_7416938_SNP [dm6]	C	T	7.828e^-5	0.56	INTRON chm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4840235	3R_4840235_DEL [dm3] 3R_9014513_DEL [dm6]	CTATGTGTCTATGTGC...	C	7.856e^-5	0.56	UPSTREAM CG11984 & 1 other DOWNSTREAM CG11985 INTRON CG11984	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_sens
3R	4968426	3R_4968426_SNP [dm3] 3R_9142704_SNP [dm6]	T	C	7.862e^-5	0.56	INTRON pum
3R	13429440	3R_13429440_SNP [dm3] 3R_17603718_SNP [dm6]	T	A	7.871e^-5	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19377610	3L_19377610_SNP [dm3] 3L_19384510_SNP [dm6]	T	A	7.903e^-5	0.56	INTRON CG32206
2L	12443128	2L_12443128_SNP [dm3] 2L_12443128_SNP [dm6]	C	T	7.921e^-5	0.56	SYNONYMOUS_CODING Oatp33Ea
3R	13673635	3R_13673635_SNP [dm3] 3R_17847913_SNP [dm6]	A	T	7.983e^-5	0.56	INTRON tinc
3R	4959425	3R_4959425_SNP [dm3] 3R_9133703_SNP [dm6]	C	A	7.988e^-5	0.56	INTRON pum
2L	7416937	2L_7416937_SNP [dm3] 2L_7416937_SNP [dm6]	C	T	8.011e^-5	0.56	INTRON chm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2040859	2L_2040859_SNP [dm3] 2L_2040859_SNP [dm6]	T	G	8.067e^-5	0.56	NON_SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2627816	3R_2627816_SNP [dm3] 3R_6802094_SNP [dm6]	A	G	8.070e^-5	0.56	UTR_3_PRIME Dfd	TF binding site BDTNP1_TFBS_dl
3L	9708501	3L_9708501_SNP [dm3] 3L_9715401_SNP [dm6]	C	T	8.113e^-5	0.56	INTRON vsg	TF binding site BDTNP1_TFBS_dl
X	17575893	X_17575893_SNP [dm3] X_17681860_SNP [dm6]	G	A	8.140e^-5	0.56	INTRON chas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8364375	3R_8364375_SNP [dm3] 3R_12538653_SNP [dm6]	G	A	8.150e^-5	0.56	INTRON Octbeta3R
3R	9526538	3R_9526538_SNP [dm3] 3R_13700816_SNP [dm6]	A	G	8.160e^-5	0.56	UTR_5_PRIME f-cup INTRON ninaB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad mE1_TFBS_HSA
3L	21585588	3L_21585588_INS [dm3] 3L_21592488_INS [dm6]	A	AACCACCTAGCCACCTA...	8.178e^-5	0.56	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8569297	3R_8569297_SNP [dm3] 3R_12743575_SNP [dm6]	C	T	8.208e^-5	0.56	SYNONYMOUS_CODING CG5999
3R	5309974	3R_5309974_SNP [dm3] 3R_9484252_SNP [dm6]	T	C	8.249e^-5	0.56	UPSTREAM CR45203 INTRON CG16779
3R	9815435	3R_9815435_SNP [dm3] 3R_13989713_SNP [dm6]	A	T	8.281e^-5	0.56	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14315458	2R_14315458_SNP [dm3] 2R_18427953_SNP [dm6]	G	A	8.329e^-5	0.56	SYNONYMOUS_CODING CG12263	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4958864	3R_4958864_SNP [dm3] 3R_9133142_SNP [dm6]	T	A	8.351e^-5	0.56	INTRON pum
3L	19199729	3L_19199729_SNP [dm3] 3L_19206629_SNP [dm6]	G	A	8.356e^-5	0.56	INTRON fz2
3R	19831961	3R_19831961_SNP [dm3] 3R_24006239_SNP [dm6]	G	A	8.394e^-5	0.56	INTRON KrT95D	TF binding site BDTNP1_TFBS_dl
X	17166513	X_17166513_SNP [dm3] X_17272480_SNP [dm6]	G	A	8.447e^-5	0.56	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12045760	3L_12045760_SNP [dm3] 3L_12052660_SNP [dm6]	C	G	8.466e^-5	0.56	INTRON rols	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	19179249	3L_19179249_SNP [dm3] 3L_19186149_SNP [dm6]	A	G	8.473e^-5	0.56	INTRON fz2
2R	10053236	2R_10053236_SNP [dm3] 2R_14165731_SNP [dm6]	C	T	8.480e^-5	0.56	SPLICE_SITE_REGION CG8323 UPSTREAM Tango7 INTRON CG8323
2R	11052368	2R_11052368_SNP [dm3] 2R_15164863_SNP [dm6]	T	C	8.551e^-5	0.56	UPSTREAM igl INTRON igl
X	10853604	X_10853604_SNP [dm3] X_10959571_SNP [dm6]	G	A	8.566e^-5	0.56	INTRON Myo10A
3R	18602801	3R_18602801_SNP [dm3] 3R_22777079_SNP [dm6]	T	G	8.573e^-5	0.56	DOWNSTREAM Usp12-46 & 1 other INTRON CG7029
3R	10158747	3R_10158747_SNP [dm3] 3R_14333025_SNP [dm6]	T	C	8.606e^-5	0.56	INTRON NK7.1
2L	1141134	2L_1141134_SNP [dm3] 2L_1141134_SNP [dm6]	T	C	8.629e^-5	0.56	UTR_3_PRIME CG4577 DOWNSTREAM CG4577
3L	19183613	3L_19183613_SNP [dm3] 3L_19190513_SNP [dm6]	G	C	8.634e^-5	0.56	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1445708	X_1445708_SNP [dm3] X_1551675_SNP [dm6]	A	C	8.663e^-5	0.56	DOWNSTREAM Mur2B INTRON Mur2B	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
X	11566154	X_11566154_INS [dm3] X_11672121_INS [dm6]	A	ATGTT	8.689e^-5	0.56	INTRON Ptp10D
3L	8745980	3L_8745980_SNP [dm3] 3L_8752880_SNP [dm6]	G	A	8.689e^-5	0.56	UPSTREAM Fhos INTERGENIC
3R	4960046	3R_4960046_INS [dm3] 3R_9134324_INS [dm6]	T	TAAT	8.727e^-5	0.56	INTRON pum
3L	19170589	3L_19170589_SNP [dm3] 3L_19177489_SNP [dm6]	A	G	8.834e^-5	0.56	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15403367	2L_15403367_SNP [dm3] 2L_15403367_SNP [dm6]	A	G	8.836e^-5	0.56	INTERGENIC
3L	19198773	3L_19198773_SNP [dm3] 3L_19205673_SNP [dm6]	G	A	8.859e^-5	0.56	INTRON fz2
2L	2930834	2L_2930834_SNP [dm3] 2L_2930834_SNP [dm6]	T	C	8.886e^-5	0.56	INTRON lilli
3R	4968045	3R_4968045_SNP [dm3] 3R_9142323_SNP [dm6]	G	C	8.960e^-5	0.56	INTRON pum
2L	4132839	2L_4132839_SNP [dm3] 2L_4132839_SNP [dm6]	A	T	8.984e^-5	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	15403373	2L_15403373_SNP [dm3] 2L_15403373_SNP [dm6]	T	G	9.024e^-5	0.56	INTERGENIC
3L	19167220	3L_19167220_SNP [dm3] 3L_19174120_SNP [dm6]	G	C	9.046e^-5	0.56	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3421686	3L_3421686_SNP [dm3] 3L_3421686_SNP [dm6]	T	G	9.050e^-5	0.56	INTRON sty
3L	7035604	3L_7035604_SNP [dm3] 3L_7042504_SNP [dm6]	T	C	9.092e^-5	0.56	INTRON Mp
2L	2040763	2L_2040763_SNP [dm3] 2L_2040763_SNP [dm6]	T	C	9.129e^-5	0.56	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4958861	3R_4958861_SNP [dm3] 3R_9133139_SNP [dm6]	T	A	9.134e^-5	0.56	INTRON pum
3R	4801478	3R_4801478_SNP [dm3] 3R_8975756_SNP [dm6]	G	A	9.146e^-5	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	5324292	3R_5324292_SNP [dm3] 3R_9498570_SNP [dm6]	T	C	9.177e^-5	0.56	UPSTREAM RhoL INTRON RhoL	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	15218637	3R_15218637_SNP [dm3] 3R_19392915_SNP [dm6]	G	A	9.181e^-5	0.56	UPSTREAM CG3739 DOWNSTREAM CG18493 INTRON Ino80	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21320033	3L_21320033_SNP [dm3] 3L_21326933_SNP [dm6]	C	G	9.186e^-5	0.56	INTRON Rab26
X	16079527	X_16079527_SNP [dm3] X_16185494_SNP [dm6]	A	C	9.188e^-5	0.56	INTERGENIC
2R	19134909	2R_19134909_SNP [dm3] 2R_23247386_SNP [dm6]	G	A	9.316e^-5	0.56	NON_SYNONYMOUS_CODING RpL22-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13086211	2L_13086211_SNP [dm3] 2L_13086211_SNP [dm6]	G	C	9.342e^-5	0.56	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	19186321	3L_19186321_SNP [dm3] 3L_19193221_SNP [dm6]	T	C	9.346e^-5	0.56	INTRON fz2
2L	10611000	2L_10611000_SNP [dm3] 2L_10611000_SNP [dm6]	G	A	9.364e^-5	0.56	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13856945	3R_13856945_SNP [dm3] 3R_18031223_SNP [dm6]	A	G	9.407e^-5	0.56	INTERGENIC
3R	5418740	3R_5418740_SNP [dm3] 3R_9593018_SNP [dm6]	C	T	9.433e^-5	0.56	INTRON CG8312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12451347	3L_12451347_SNP [dm3] 3L_12458247_SNP [dm6]	T	G	9.439e^-5	0.56	INTERGENIC
3R	4960039	3R_4960039_SNP [dm3] 3R_9134317_SNP [dm6]	G	A	9.491e^-5	0.56	INTRON pum
3R	10230657	3R_10230657_SNP [dm3] 3R_14404935_SNP [dm6]	C	T	9.508e^-5	0.56	INTRON cv-c	TF binding site mE1_TFBS_inv
X	15901640	X_15901640_SNP [dm3] X_16007607_SNP [dm6]	C	T	9.611e^-5	0.56	SYNONYMOUS_CODING CG12698
3R	8364355	3R_8364355_SNP [dm3] 3R_12538633_SNP [dm6]	A	T	9.612e^-5	0.56	INTRON Octbeta3R
2R	10638546	2R_10638546_SNP [dm3] 2R_14751041_SNP [dm6]	A	C	9.642e^-5	0.56	DOWNSTREAM AttB INTRON Rpn6
3R	10231744	3R_10231744_SNP [dm3] 3R_14406022_SNP [dm6]	G	T	9.648e^-5	0.56	UPSTREAM cv-c INTRON cv-c
3L	17271947	3L_17271947_SNP [dm3] 3L_17278847_SNP [dm6]	C	A	9.667e^-5	0.56	INTERGENIC
2L	5414276	2L_5414276_SNP [dm3] 2L_5414276_SNP [dm6]	G	C	9.736e^-5	0.56	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13102424	3L_13102424_SNP [dm3] 3L_13109324_SNP [dm6]	A	G	9.754e^-5	0.56	INTERGENIC
3R	25698857	3R_25698857_SNP [dm3] 3R_29873135_SNP [dm6]	T	C	9.794e^-5	0.56	SYNONYMOUS_CODING CG34133	TF binding site mE1_TFBS_cad
2L	11023177	2L_11023177_SNP [dm3] 2L_11023177_SNP [dm6]	G	A	9.808e^-5	0.56	INTRON Samuel	TF binding site mE1_TFBS_cad
3R	6267539	3R_6267539_SNP [dm3] 3R_10441817_SNP [dm6]	T	A	9.837e^-5	0.56	INTERGENIC
2R	19134938	2R_19134938_SNP [dm3] 2R_23247415_SNP [dm6]	C	T	9.866e^-5	0.56	SYNONYMOUS_CODING RpL22-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3052892	2L_3052892_SNP [dm3] 2L_3052892_SNP [dm6]	T	G	9.877e^-5	0.56	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	12045743	3L_12045743_SNP [dm3] 3L_12052643_SNP [dm6]	A	G	9.994e^-5	0.56	INTRON rols	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	12045754	3L_12045754_SNP [dm3] 3L_12052654_SNP [dm6]	C	T	9.994e^-5	0.56	INTRON rols	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	12257260	3L_12257260_SNP [dm3] 3L_12264160_SNP [dm6]	A	G	1.000e^-4	0.56	INTRON app
2R	10514827	2R_10514827_SNP [dm3] 2R_14627322_SNP [dm6]	T	C	1.001e^-4	0.56	INTERGENIC
2L	14784020	2L_14784020_SNP [dm3] 2L_14784020_SNP [dm6]	A	G	1.004e^-4	0.56	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5719369	2R_5719369_SNP [dm3] 2R_9831864_SNP [dm6]	A	C	1.011e^-4	0.56	UPSTREAM hebe INTRON hebe
3L	19541361	3L_19541361_SNP [dm3] 3L_19548261_SNP [dm6]	C	T	1.011e^-4	0.56	SYNONYMOUS_CODING l_3_76BDr DOWNSTREAM Rcd7
2L	10703033	2L_10703033_SNP [dm3] 2L_10703033_SNP [dm6]	A	G	1.012e^-4	0.56	UPSTREAM CG6415 INTRON Lip2
2R	20972156	2R_20972156_SNP [dm3] 2R_25084633_SNP [dm6]	C	A	1.015e^-4	0.56	UPSTREAM gol INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	6845499	2L_6845499_SNP [dm3] 2L_6845499_SNP [dm6]	A	C	1.019e^-4	0.56	INTERGENIC
3R	8555061	3R_8555061_INS [dm3] 3R_12729339_INS [dm6]	T	TT	1.025e^-4	0.56	DOWNSTREAM CR44231 INTERGENIC
X	8423903	X_8423903_SNP [dm3] X_8529870_SNP [dm6]	A	T	1.031e^-4	0.56	UPSTREAM PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_dl
3L	10204861	3L_10204861_SNP [dm3] 3L_10211761_SNP [dm6]	C	T	1.032e^-4	0.56	INTERGENIC
2L	10703063	2L_10703063_SNP [dm3] 2L_10703063_SNP [dm6]	A	T	1.044e^-4	0.56	UPSTREAM CG6415 INTRON Lip2
3L	18229038	3L_18229038_SNP [dm3] 3L_18235938_SNP [dm6]	C	A	1.046e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19832042	3R_19832042_DEL [dm3] 3R_24006320_DEL [dm6]	TT	T	1.052e^-4	0.56	INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10052736	3R_10052736_SNP [dm3] 3R_14227014_SNP [dm6]	T	A	1.053e^-4	0.56	UPSTREAM CG9631 INTERGENIC
3R	10075317	3R_10075317_SNP [dm3] 3R_14249595_SNP [dm6]	A	G	1.053e^-4	0.56	INTERGENIC
3R	10079589	3R_10079589_SNP [dm3] 3R_14253867_SNP [dm6]	T	A	1.053e^-4	0.56	INTRON Aats-met
X	1445706	X_1445706_SNP [dm3] X_1551673_SNP [dm6]	A	G	1.054e^-4	0.56	DOWNSTREAM Mur2B INTRON Mur2B	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	16810118	3L_16810118_SNP [dm3] 3L_16817018_SNP [dm6]	T	A	1.057e^-4	0.56	INTRON nudC & 1 other
3L	12681450	3L_12681450_SNP [dm3] 3L_12688350_SNP [dm6]	G	A	1.058e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9854462	3R_9854462_DEL [dm3] 3R_14028740_DEL [dm6]	GAGTTATG	G	1.066e^-4	0.56	UPSTREAM Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	6812443	2R_6812443_SNP [dm3] 2R_10924938_SNP [dm6]	G	A	1.066e^-4	0.56	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13363053	3R_13363053_SNP [dm3] 3R_17537331_SNP [dm6]	G	A	1.066e^-4	0.56	DOWNSTREAM P5cr-2 INTRON l_3_07882
3R	4974735	3R_4974735_SNP [dm3] 3R_9149013_SNP [dm6]	A	T	1.067e^-4	0.56	INTRON pum
2L	2007807	2L_2007807_SNP [dm3] 2L_2007807_SNP [dm6]	G	T	1.068e^-4	0.56	UPSTREAM CG15353 & 1 other DOWNSTREAM CR45712 INTERGENIC
2L	9174570	2L_9174570_SNP [dm3] 2L_9174570_SNP [dm6]	C	G	1.073e^-4	0.56	INTRON tai
2L	13185963	2L_13185963_SNP [dm3] 2L_13185963_SNP [dm6]	G	A	1.074e^-4	0.56	SYNONYMOUS_CODING CG16974
3L	13460349	3L_13460349_SNP [dm3] 3L_13467249_SNP [dm6]	C	T	1.076e^-4	0.56	DOWNSTREAM CG10089 INTRON CG10089	TF binding site mE1_TFBS_chinmo
3L	3253248	3L_3253248_SNP [dm3] 3L_3253248_SNP [dm6]	A	T	1.076e^-4	0.56	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi
2L	15516868	2L_15516868_SNP [dm3] 2L_15516868_SNP [dm6]	T	A	1.079e^-4	0.56	UPSTREAM CR44864 INTERGENIC
3R	20294933	3R_20294933_SNP [dm3] 3R_24469211_SNP [dm6]	T	G	1.090e^-4	0.56	UPSTREAM CG31128 INTERGENIC
3L	19199805	3L_19199805_DEL [dm3] 3L_19206705_DEL [dm6]	TCGAGAAT	T	1.092e^-4	0.56	INTRON fz2
3R	10050858	3R_10050858_INS [dm3] 3R_14225136_INS [dm6]	T	TGTTGTAATTTATAATTTAT...	1.094e^-4	0.56	UTR_3_PRIME CG9631 UPSTREAM Sp212	TF binding site mE1_TFBS_cad
3R	7733206	3R_7733206_SNP [dm3] 3R_11907484_SNP [dm6]	A	G	1.100e^-4	0.56	INTRON Cad87A
3L	13465606	3L_13465606_SNP [dm3] 3L_13472506_SNP [dm6]	A	G	1.102e^-4	0.56	INTRON CG10089
3R	4957854	3R_4957854_SNP [dm3] 3R_9132132_SNP [dm6]	C	T	1.103e^-4	0.56	INTRON pum	TF binding site mE1_TFBS_cad
3R	8415499	3R_8415499_SNP [dm3] 3R_12589777_SNP [dm6]	T	A	1.104e^-4	0.56	INTRON Octbeta2R
2L	9403194	2L_9403194_SNP [dm3] 2L_9403194_SNP [dm6]	C	A	1.108e^-4	0.56	INTRON Shawl
2L	12443179	2L_12443179_SNP [dm3] 2L_12443179_SNP [dm6]	G	A	1.109e^-4	0.56	SYNONYMOUS_CODING Oatp33Ea
2L	10469138	2L_10469138_SNP [dm3] 2L_10469138_SNP [dm6]	T	C	1.110e^-4	0.56	INTRON RluA-1
2L	13100868	2L_13100868_SNP [dm3] 2L_13100868_SNP [dm6]	G	A	1.111e^-4	0.56	INTERGENIC
3L	6838336	3L_6838336_SNP [dm3] 3L_6845236_SNP [dm6]	C	G	1.119e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6878901	3L_6878901_SNP [dm3] 3L_6885801_SNP [dm6]	A	G	1.120e^-4	0.56	INTERGENIC
3R	15011093	3R_15011093_SNP [dm3] 3R_19185371_SNP [dm6]	C	G	1.120e^-4	0.56	INTRON CG31475
3L	13326257	3L_13326257_SNP [dm3] 3L_13333157_SNP [dm6]	G	C	1.121e^-4	0.56	INTERGENIC
3R	14306910	3R_14306910_DEL [dm3] 3R_18481188_DEL [dm6]	AGCTTA	A	1.124e^-4	0.56	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14306917	3R_14306917_SNP [dm3] 3R_18481195_SNP [dm6]	T	C	1.124e^-4	0.56	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7040884	2L_7040884_SNP [dm3] 2L_7040884_SNP [dm6]	T	C	1.125e^-4	0.56	INTRON milt
3L	18231717	3L_18231717_DEL [dm3] 3L_18238617_DEL [dm6]	AA	A	1.125e^-4	0.56	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	2392593	3R_2392593_SNP [dm3] 3R_6566871_SNP [dm6]	C	A	1.125e^-4	0.56	UTR_5_PRIME dpr11
3R	18602722	3R_18602722_SNP [dm3] 3R_22777000_SNP [dm6]	G	A	1.138e^-4	0.562	DOWNSTREAM Usp12-46 & 1 other INTRON CG7029	TF binding site mE1_TFBS_cad
3R	10076755	3R_10076755_SNP [dm3] 3R_14251033_SNP [dm6]	G	T	1.140e^-4	0.562	DOWNSTREAM Aats-met INTERGENIC
3R	16227273	3R_16227273_SNP [dm3] 3R_20401551_SNP [dm6]	G	T	1.143e^-4	0.562	INTRON Gfrl
3R	9795071	3R_9795071_SNP [dm3] 3R_13969349_SNP [dm6]	C	G	1.149e^-4	0.562	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	10233117	3R_10233117_SNP [dm3] 3R_14407395_SNP [dm6]	C	A	1.151e^-4	0.562	INTRON cv-c
3R	10030366	3R_10030366_SNP [dm3] 3R_14204644_SNP [dm6]	T	A	1.151e^-4	0.562	INTRON Dop1R1
3R	10053361	3R_10053361_SNP [dm3] 3R_14227639_SNP [dm6]	G	C	1.151e^-4	0.562	UPSTREAM CG9631 DOWNSTREAM CG9624 INTERGENIC
3R	4952717	3R_4952717_SNP [dm3] 3R_9126995_SNP [dm6]	C	T	1.160e^-4	0.565	INTRON pum
3R	14306954	3R_14306954_SNP [dm3] 3R_18481232_SNP [dm6]	G	C	1.164e^-4	0.566	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	19172690	3L_19172690_SNP [dm3] 3L_19179590_SNP [dm6]	A	G	1.168e^-4	0.566	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14695336	3R_14695336_SNP [dm3] 3R_18869614_SNP [dm6]	C	A	1.173e^-4	0.566	INTERGENIC
3R	14306949	3R_14306949_SNP [dm3] 3R_18481227_SNP [dm6]	A	G	1.180e^-4	0.566	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8125691	2R_8125691_SNP [dm3] 2R_12238186_SNP [dm6]	T	G	1.191e^-4	0.566	INTERGENIC
3R	13429284	3R_13429284_SNP [dm3] 3R_17603562_SNP [dm6]	A	T	1.191e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15995063	X_15995063_SNP [dm3] X_16101030_SNP [dm6]	G	A	1.191e^-4	0.566	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19134966	2R_19134966_SNP [dm3] 2R_23247443_SNP [dm6]	A	T	1.195e^-4	0.566	NON_SYNONYMOUS_CODING RpL22-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4032396	3L_4032396_SNP [dm3] 3L_4032396_SNP [dm6]	G	A	1.198e^-4	0.566	SPLICE_SITE_REGION Gr64d DOWNSTREAM Gr64b & 1 other INTRON Gr64d & 1 other
3L	10940683	3L_10940683_SNP [dm3] 3L_10947583_SNP [dm6]	T	A	1.204e^-4	0.566	INTERGENIC
2R	20401910	2R_20401910_SNP [dm3] 2R_24514387_SNP [dm6]	A	T	1.206e^-4	0.566	INTRON Letm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3897679	X_3897679_SNP [dm3] X_4003646_SNP [dm6]	G	A	1.206e^-4	0.566	INTERGENIC
2L	15509307	2L_15509307_SNP [dm3] 2L_15509307_SNP [dm6]	A	C	1.212e^-4	0.566	INTERGENIC
3R	13429335	3R_13429335_SNP [dm3] 3R_17603613_SNP [dm6]	T	A	1.220e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13066221	2L_13066221_SNP [dm3] 2L_13066221_SNP [dm6]	C	T	1.224e^-4	0.566	INTERGENIC
3L	10204845	3L_10204845_SNP [dm3] 3L_10211745_SNP [dm6]	C	G	1.232e^-4	0.566	INTERGENIC
3L	19160187	3L_19160187_SNP [dm3] 3L_19167087_SNP [dm6]	A	T	1.235e^-4	0.566	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19161612	3L_19161612_SNP [dm3] 3L_19168512_SNP [dm6]	T	G	1.235e^-4	0.566	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18221410	3L_18221410_INS [dm3] 3L_18228310_INS [dm6]	A	ATACA	1.237e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6014104	2L_6014104_SNP [dm3] 2L_6014104_SNP [dm6]	G	T	1.241e^-4	0.566	SPLICE_SITE_REGION H2.0 INTRON H2.0
X	7073384	X_7073384_SNP [dm3] X_7179351_SNP [dm6]	A	T	1.242e^-4	0.566	INTRON CG9650 & 1 other
3R	4987060	3R_4987060_DEL [dm3] 3R_9161338_DEL [dm6]	GG	G	1.245e^-4	0.566	INTRON pum
2L	15403377	2L_15403377_SNP [dm3] 2L_15403377_SNP [dm6]	T	G	1.247e^-4	0.566	INTERGENIC
3L	19160040	3L_19160040_SNP [dm3] 3L_19166940_SNP [dm6]	C	T	1.248e^-4	0.566	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10232853	3R_10232853_SNP [dm3] 3R_14407131_SNP [dm6]	T	A	1.248e^-4	0.566	INTRON cv-c
2L	16688818	2L_16688818_SNP [dm3] 2L_16688818_SNP [dm6]	A	C	1.250e^-4	0.566	INTRON grp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9985253	3R_9985253_SNP [dm3] 3R_14159531_SNP [dm6]	C	T	1.252e^-4	0.566	NON_SYNONYMOUS_CODING CG31327
2L	17165167	2L_17165167_SNP [dm3] 2L_17165167_SNP [dm6]	A	C	1.256e^-4	0.566	INTRON beat-IIIa & 1 other
3L	13239992	3L_13239992_SNP [dm3] 3L_13246892_SNP [dm6]	G	A	1.258e^-4	0.566	UTR_3_PRIME CG32119 INTRON caps
3L	19323774	3L_19323774_SNP [dm3] 3L_19330674_SNP [dm6]	A	G	1.259e^-4	0.566	INTRON pip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	19363917	X_19363917_SNP [dm3] X_19469884_SNP [dm6]	G	A	1.263e^-4	0.566	UTR_3_PRIME kek5	TF binding site mE1_TFBS_cad
2L	14595493	2L_14595493_SNP [dm3] 2L_14595493_SNP [dm6]	T	G	1.268e^-4	0.566	INTERGENIC
2R	17007001	2R_17007001_SNP [dm3] 2R_21119496_SNP [dm6]	T	A	1.269e^-4	0.566	NON_SYNONYMOUS_CODING CG9394 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21785103	3L_21785103_SNP [dm3] 3L_21792003_SNP [dm6]	A	G	1.269e^-4	0.566	INTERGENIC
3L	12257287	3L_12257287_SNP [dm3] 3L_12264187_SNP [dm6]	A	C	1.272e^-4	0.566	INTRON app
2L	3048640	2L_3048640_SNP [dm3] 2L_3048640_SNP [dm6]	G	A	1.273e^-4	0.566	UPSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	1937271	2R_1937271_SNP [dm3] 2R_6049766_SNP [dm6]	T	G	1.277e^-4	0.566	DOWNSTREAM CG34212 INTERGENIC
3R	8384252	3R_8384252_SNP [dm3] 3R_12558530_SNP [dm6]	T	A	1.281e^-4	0.566	INTRON Octbeta2R
2L	7639550	2L_7639550_SNP [dm3] 2L_7639550_SNP [dm6]	A	T	1.285e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9979413	3R_9979413_SNP [dm3] 3R_14153691_SNP [dm6]	C	G	1.288e^-4	0.566	SYNONYMOUS_CODING CG9722 DOWNSTREAM CR44215
3L	15355273	3L_15355273_SNP [dm3] 3L_15362173_SNP [dm6]	T	A	1.288e^-4	0.566	INTERGENIC
2L	13712255	2L_13712255_SNP [dm3] 2L_13712255_SNP [dm6]	G	A	1.292e^-4	0.566	INTRON CG31814
3R	26256332	3R_26256332_SNP [dm3] 3R_30430610_SNP [dm6]	A	G	1.293e^-4	0.566	NON_SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
2L	5749311	2L_5749311_SNP [dm3] 2L_5749311_SNP [dm6]	C	G	1.295e^-4	0.566	INTRON CG11030	TF binding site BDTNP1_TFBS_twi
2R	8492642	2R_8492642_SNP [dm3] 2R_12605137_SNP [dm6]	A	T	1.301e^-4	0.567	INTRON Amph
2L	10047498	2L_10047498_SNP [dm3] 2L_10047498_SNP [dm6]	C	T	1.302e^-4	0.567	INTERGENIC
3R	4240227	3R_4240227_SNP [dm3] 3R_8414505_SNP [dm6]	A	T	1.316e^-4	0.571	INTRON CG45263
3L	19187606	3L_19187606_SNP [dm3] 3L_19194506_SNP [dm6]	C	A	1.320e^-4	0.571	INTRON fz2
3L	13465220	3L_13465220_SNP [dm3] 3L_13472120_SNP [dm6]	C	G	1.324e^-4	0.571	INTRON CG10089
3L	4518822	3L_4518822_SNP [dm3] 3L_4518822_SNP [dm6]	A	G	1.332e^-4	0.571	INTRON Tie
2L	18566288	2L_18566288_SNP [dm3] 2L_18566288_SNP [dm6]	A	G	1.346e^-4	0.571	INTRON Pde11
3L	18229637	3L_18229637_SNP [dm3] 3L_18236537_SNP [dm6]	C	T	1.347e^-4	0.571	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19166865	3L_19166865_DEL [dm3] 3L_19173765_DEL [dm6]	TTAAAGACATCCCATAACAG...	CAATGG	1.348e^-4	0.571	INTRON fz2
3L	413373	3L_413373_SNP [dm3] 3L_413373_SNP [dm6]	G	A	1.353e^-4	0.571	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	10230673	3R_10230673_SNP [dm3] 3R_14404951_SNP [dm6]	G	A	1.353e^-4	0.571	INTRON cv-c	TF binding site mE1_TFBS_inv
3R	2839243	3R_2839243_SNP [dm3] 3R_7013521_SNP [dm6]	G	A	1.354e^-4	0.571	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19185382	3L_19185382_SNP [dm3] 3L_19192282_SNP [dm6]	A	T	1.354e^-4	0.571	INTRON fz2
3R	2667668	3R_2667668_SNP [dm3] 3R_6841946_SNP [dm6]	C	T	1.356e^-4	0.571	NON_SYNONYMOUS_CODING Scr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25701702	3R_25701702_SNP [dm3] 3R_29875980_SNP [dm6]	A	G	1.362e^-4	0.571	DOWNSTREAM CG34133 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19134875	2R_19134875_SNP [dm3] 2R_23247352_SNP [dm6]	G	T	1.363e^-4	0.571	SYNONYMOUS_CODING RpL22-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13866294	3R_13866294_SNP [dm3] 3R_18040572_SNP [dm6]	T	G	1.365e^-4	0.571	INTERGENIC
2R	6812415	2R_6812415_SNP [dm3] 2R_10924910_SNP [dm6]	C	T	1.369e^-4	0.571	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4013181	3L_4013181_SNP [dm3] 3L_4013181_SNP [dm6]	G	C	1.370e^-4	0.571	INTERGENIC
3L	19167523	3L_19167523_SNP [dm3] 3L_19174423_SNP [dm6]	A	G	1.370e^-4	0.571	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15403365	2L_15403365_SNP [dm3] 2L_15403365_SNP [dm6]	C	A	1.374e^-4	0.571	INTERGENIC
3L	19173881	3L_19173881_SNP [dm3] 3L_19180781_SNP [dm6]	C	T	1.375e^-4	0.571	INTRON fz2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
2L	12443152	2L_12443152_SNP [dm3] 2L_12443152_SNP [dm6]	A	G	1.380e^-4	0.571	SYNONYMOUS_CODING Oatp33Ea
3L	7245697	3L_7245697_SNP [dm3] 3L_7252597_SNP [dm6]	C	T	1.382e^-4	0.571	INTRON CG14830 EXON CR43470
2L	3045266	2L_3045266_SNP [dm3] 2L_3045266_SNP [dm6]	T	C	1.384e^-4	0.571	INTRON v_2_k05816
3R	13871179	3R_13871179_SNP [dm3] 3R_18045457_SNP [dm6]	A	G	1.386e^-4	0.571	UTR_3_PRIME htl
2R	20583451	2R_20583451_DEL [dm3] 2R_24695928_DEL [dm6]	TAT	T	1.387e^-4	0.571	UTR_3_PRIME Mid1
2R	14805250	2R_14805250_SNP [dm3] 2R_18917745_SNP [dm6]	T	A	1.391e^-4	0.571	INTRON sano
3L	13859320	3L_13859320_SNP [dm3] 3L_13866220_SNP [dm6]	A	G	1.410e^-4	0.573	INTRON CG8745	TF binding site BDTNP1_TFBS_dl
3R	10843097	3R_10843097_SNP [dm3] 3R_15017375_SNP [dm6]	G	A	1.410e^-4	0.573	INTERGENIC
3L	10671425	3L_10671425_SNP [dm3] 3L_10678325_SNP [dm6]	T	G	1.411e^-4	0.573	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9403184	2L_9403184_SNP [dm3] 2L_9403184_SNP [dm6]	C	A	1.412e^-4	0.573	INTRON Shawl
3L	12686272	3L_12686272_SNP [dm3] 3L_12693172_SNP [dm6]	T	A	1.412e^-4	0.573	UPSTREAM mirr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	10162987	3R_10162987_SNP [dm3] 3R_14337265_SNP [dm6]	C	A	1.415e^-4	0.573	INTRON NK7.1	TF binding site mE1_TFBS_kn
2L	12945701	2L_12945701_DEL [dm3] 2L_12945701_DEL [dm6]	ATTTA	A	1.419e^-4	0.573	INTERGENIC
3R	2730208	3R_2730208_SNP [dm3] 3R_6904486_SNP [dm6]	C	G	1.422e^-4	0.573	INTRON Antp EXON CR43252	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11674804	3L_11674804_SNP [dm3] 3L_11681704_SNP [dm6]	T	C	1.424e^-4	0.573	UPSTREAM TfIIEalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9719825	3R_9719825_SNP [dm3] 3R_13894103_SNP [dm6]	A	T	1.438e^-4	0.576	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	9880126	3R_9880126_SNP [dm3] 3R_14054404_SNP [dm6]	T	A	1.439e^-4	0.576	INTERGENIC
3R	13429415	3R_13429415_SNP [dm3] 3R_17603693_SNP [dm6]	T	A	1.440e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14512846	2L_14512846_SNP [dm3] 2L_14512846_SNP [dm6]	C	T	1.448e^-4	0.578	UPSTREAM CR45693 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	16808686	3L_16808686_SNP [dm3] 3L_16815586_SNP [dm6]	C	T	1.451e^-4	0.578	INTRON nudC & 1 other
3R	12525855	3R_12525855_DEL [dm3] 3R_16700133_DEL [dm6]	CC	C	1.459e^-4	0.578	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14306929	3R_14306929_SNP [dm3] 3R_18481207_SNP [dm6]	T	C	1.463e^-4	0.578	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14306969	3R_14306969_DEL [dm3] 3R_18481247_DEL [dm6]	CATTAAGAAATT...	C	1.463e^-4	0.578	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18221419	3L_18221419_SNP [dm3] 3L_18228319_SNP [dm6]	A	T	1.468e^-4	0.578	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5207445	3R_5207445_SNP [dm3] 3R_9381723_SNP [dm6]	A	G	1.472e^-4	0.578	INTRON FER
3R	2297435	3R_2297435_SNP [dm3] 3R_6471713_SNP [dm6]	A	G	1.472e^-4	0.578	DOWNSTREAM Neurochondrin INTERGENIC
2L	5314620	2L_5314620_SNP [dm3] 2L_5314620_SNP [dm6]	C	A	1.475e^-4	0.578	DOWNSTREAM Ncoa6 INTRON CG14024	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	11590454	3L_11590454_SNP [dm3] 3L_11597354_SNP [dm6]	C	A	1.476e^-4	0.578	UTR_5_PRIME CG7368
3R	11452304	3R_11452304_SNP [dm3] 3R_15626582_SNP [dm6]	G	A	1.489e^-4	0.582	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8074617	3L_8074617_DEL [dm3] 3L_8081517_DEL [dm6]	GATGTTTACC	T	1.497e^-4	0.583	DOWNSTREAM CR43974 INTRON Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13570432	2L_13570432_SNP [dm3] 2L_13570432_SNP [dm6]	T	G	1.499e^-4	0.583	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5697212	3L_5697212_SNP [dm3] 3L_5704112_SNP [dm6]	G	C	1.502e^-4	0.583	INTRON sif
X	6496913	X_6496913_INS [dm3] X_6602880_INS [dm6]	A	AA	1.508e^-4	0.583	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2929725	2L_2929725_SNP [dm3] 2L_2929725_SNP [dm6]	C	T	1.520e^-4	0.583	INTRON lilli
3R	4247244	3R_4247244_SNP [dm3] 3R_8421522_SNP [dm6]	C	T	1.524e^-4	0.583	UPSTREAM Obp85a INTRON CG45263
3L	14710177	3L_14710177_SNP [dm3] 3L_14717077_SNP [dm6]	T	A	1.531e^-4	0.583	INTRON ome	regulatory region REDfly_CRMs
X	17164735	X_17164735_SNP [dm3] X_17270702_SNP [dm6]	A	T	1.534e^-4	0.583	INTRON f
2L	11023164	2L_11023164_DEL [dm3] 2L_11023164_DEL [dm6]	TTGGAGAATTCA...	T	1.537e^-4	0.583	INTRON Samuel	TF binding site mE1_TFBS_cad
3L	16903274	3L_16903274_SNP [dm3] 3L_16910174_SNP [dm6]	C	A	1.539e^-4	0.583	INTRON Lmpt
2L	15015162	2L_15015162_SNP [dm3] 2L_15015162_SNP [dm6]	A	G	1.539e^-4	0.583	INTERGENIC
X	10849784	X_10849784_SNP [dm3] X_10955751_SNP [dm6]	A	G	1.541e^-4	0.583	SYNONYMOUS_CODING Myo10A INTRON Myo10A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2729237	3R_2729237_SNP [dm3] 3R_6903515_SNP [dm6]	A	T	1.542e^-4	0.583	INTRON Antp EXON CR43252	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	4952780	3R_4952780_SNP [dm3] 3R_9127058_SNP [dm6]	C	T	1.546e^-4	0.583	INTRON pum
3R	21997875	3R_21997875_SNP [dm3] 3R_26172153_SNP [dm6]	A	G	1.548e^-4	0.583	INTRON CG31323
3L	18829398	3L_18829398_SNP [dm3] 3L_18836298_SNP [dm6]	G	T	1.549e^-4	0.583	INTRON Indy
3L	13864687	3L_13864687_SNP [dm3] 3L_13871587_SNP [dm6]	C	T	1.549e^-4	0.583	UTR_3_PRIME dysc
3R	8555012	3R_8555012_SNP [dm3] 3R_12729290_SNP [dm6]	A	T	1.552e^-4	0.583	DOWNSTREAM CR44231 INTERGENIC
3L	18216165	3L_18216165_SNP [dm3] 3L_18223065_SNP [dm6]	A	C	1.557e^-4	0.583	INTERGENIC
3L	19451044	3L_19451044_SNP [dm3] 3L_19457944_SNP [dm6]	C	T	1.558e^-4	0.583	INTERGENIC
2L	2930365	2L_2930365_SNP [dm3] 2L_2930365_SNP [dm6]	A	G	1.564e^-4	0.583	INTRON lilli
3L	11674778	3L_11674778_SNP [dm3] 3L_11681678_SNP [dm6]	G	A	1.568e^-4	0.583	UPSTREAM TfIIEalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20076184	2L_20076184_SNP [dm3] 2L_20076184_SNP [dm6]	G	A	1.570e^-4	0.583	NON_SYNONYMOUS_CODING neb UPSTREAM pr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19195516	3L_19195516_SNP [dm3] 3L_19202416_SNP [dm6]	G	A	1.572e^-4	0.583	INTRON fz2
2R	17132082	2R_17132082_SNP [dm3] 2R_21244577_SNP [dm6]	C	T	1.577e^-4	0.583	INTRON ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8092269	2R_8092269_SNP [dm3] 2R_12204764_SNP [dm6]	T	A	1.578e^-4	0.583	INTERGENIC
2R	5711955	2R_5711955_INS [dm3] 2R_9824450_INS [dm6]	A	AAATAATATAACATATAAAG...	1.579e^-4	0.583	INTRON dila	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4951085	3R_4951085_DEL [dm3] 3R_9125363_DEL [dm6]	AAAGTAATTAAAA...	A	1.584e^-4	0.583	INTRON pum
2L	10729695	2L_10729695_SNP [dm3] 2L_10729695_SNP [dm6]	T	C	1.586e^-4	0.583	SYNONYMOUS_CODING CG6443 UPSTREAM CG17118 DOWNSTREAM CG6431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18216228	3L_18216228_DEL [dm3] 3L_18223128_DEL [dm6]	AGGCA	TT	1.587e^-4	0.583	INTERGENIC
3L	10101071	3L_10101071_SNP [dm3] 3L_10107971_SNP [dm6]	G	A	1.597e^-4	0.583	INTRON dpr6
3L	9069513	3L_9069513_SNP [dm3] 3L_9076413_SNP [dm6]	A	G	1.598e^-4	0.583	SYNONYMOUS_CODING Tequila INTRON Tequila
3L	12048117	3L_12048117_SNP [dm3] 3L_12055017_SNP [dm6]	G	A	1.603e^-4	0.583	INTRON rols
3R	10034888	3R_10034888_SNP [dm3] 3R_14209166_SNP [dm6]	C	T	1.610e^-4	0.583	INTRON Dop1R1
3R	13430825	3R_13430825_SNP [dm3] 3R_17605103_SNP [dm6]	G	A	1.615e^-4	0.583	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	5828599	X_5828599_INS [dm3] X_5934566_INS [dm6]	A	AA	1.620e^-4	0.583	INTRON CG3726
3L	1862441	3L_1862441_SNP [dm3] 3L_1862441_SNP [dm6]	T	A	1.625e^-4	0.583	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26260744	3R_26260744_SNP [dm3] 3R_30435022_SNP [dm6]	T	G	1.627e^-4	0.583	UTR_3_PRIME CG15534 DOWNSTREAM CG15537
3L	20855544	3L_20855544_SNP [dm3] 3L_20862444_SNP [dm6]	T	A	1.628e^-4	0.583	INTRON CG32432
3L	12881409	3L_12881409_SNP [dm3] 3L_12888309_SNP [dm6]	C	T	1.628e^-4	0.583	SYNONYMOUS_CODING CG14120
3R	10112457	3R_10112457_SNP [dm3] 3R_14286735_SNP [dm6]	G	T	1.630e^-4	0.583	UTR_5_PRIME trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12766146	2L_12766146_SNP [dm3] 2L_12766146_SNP [dm6]	A	T	1.636e^-4	0.583	INTERGENIC
3R	10158712	3R_10158712_SNP [dm3] 3R_14332990_SNP [dm6]	C	T	1.639e^-4	0.583	INTRON NK7.1
3L	13898688	3L_13898688_SNP [dm3] 3L_13905588_SNP [dm6]	C	A	1.641e^-4	0.583	INTERGENIC
3R	4676531	3R_4676531_SNP [dm3] 3R_8850809_SNP [dm6]	T	G	1.641e^-4	0.583	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8746349	3L_8746349_SNP [dm3] 3L_8753249_SNP [dm6]	C	A	1.642e^-4	0.583	UPSTREAM Fhos INTERGENIC
3L	22930024	3L_22930024_SNP [dm3] 3L_22936924_SNP [dm6]	C	T	1.643e^-4	0.583	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25723535	3R_25723535_SNP [dm3] 3R_29897813_SNP [dm6]	T	A	1.645e^-4	0.583	UTR_3_PRIME CG31038 INTRON CG31038
3R	11319407	3R_11319407_SNP [dm3] 3R_15493685_SNP [dm6]	T	A	1.645e^-4	0.583	UPSTREAM CG5213 DOWNSTREAM CG5205 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	15767046	3R_15767046_SNP [dm3] 3R_19941324_SNP [dm6]	C	A	1.654e^-4	0.585	INTRON Hs6st
3L	10115470	3L_10115470_SNP [dm3] 3L_10122370_SNP [dm6]	C	A	1.655e^-4	0.585	INTRON dpr6
3L	22101841	3L_22101841_SNP [dm3] 3L_22108741_SNP [dm6]	G	A	1.659e^-4	0.585	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25440367	3R_25440367_DEL [dm3] 3R_29614645_DEL [dm6]	CG	C	1.664e^-4	0.585	INTRON alph
3R	4676650	3R_4676650_SNP [dm3] 3R_8850928_SNP [dm6]	C	T	1.667e^-4	0.586	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5277475	3R_5277475_SNP [dm3] 3R_9451753_SNP [dm6]	T	C	1.672e^-4	0.586	UTR_3_PRIME ps
3L	7315041	3L_7315041_SNP [dm3] 3L_7321941_SNP [dm6]	T	C	1.683e^-4	0.589	SPLICE_SITE_REGION RhoGEF4 DOWNSTREAM CG8607 INTRON RhoGEF4
3L	19162402	3L_19162402_SNP [dm3] 3L_19169302_SNP [dm6]	G	A	1.686e^-4	0.589	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	9870566	3L_9870566_SNP [dm3] 3L_9877466_SNP [dm6]	C	T	1.689e^-4	0.589	INTERGENIC
3L	16816732	3L_16816732_SNP [dm3] 3L_16823632_SNP [dm6]	G	A	1.693e^-4	0.589	INTRON CG13024
3R	10365243	3R_10365243_SNP [dm3] 3R_14539521_SNP [dm6]	T	C	1.696e^-4	0.589	INTRON Pde6
2L	10048267	2L_10048267_SNP [dm3] 2L_10048267_SNP [dm6]	T	C	1.698e^-4	0.589	INTERGENIC
3R	5243792	3R_5243792_SNP [dm3] 3R_9418070_SNP [dm6]	T	C	1.702e^-4	0.589	DOWNSTREAM alpha-Man-II INTRON ps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6283665	2L_6283665_SNP [dm3] 2L_6283665_SNP [dm6]	C	A	1.721e^-4	0.591	INTRON Ddr
2L	17548110	2L_17548110_SNP [dm3] 2L_17548110_SNP [dm6]	C	T	1.729e^-4	0.591	DOWNSTREAM CR45697 INTERGENIC
3L	11878942	3L_11878942_SNP [dm3] 3L_11885842_SNP [dm6]	C	T	1.730e^-4	0.591	INTRON CG44837
2L	1239327	2L_1239327_SNP [dm3] 2L_1239327_SNP [dm6]	A	G	1.736e^-4	0.591	UPSTREAM CG5397 INTERGENIC
3R	4974769	3R_4974769_SNP [dm3] 3R_9149047_SNP [dm6]	A	T	1.741e^-4	0.591	INTRON pum
2L	5705136	2L_5705136_SNP [dm3] 2L_5705136_SNP [dm6]	T	C	1.745e^-4	0.591	INTERGENIC
3R	10232856	3R_10232856_SNP [dm3] 3R_14407134_SNP [dm6]	T	A	1.750e^-4	0.591	INTRON cv-c
3L	2313474	3L_2313474_SNP [dm3] 3L_2313474_SNP [dm6]	C	A	1.755e^-4	0.591	INTERGENIC
2L	9672275	2L_9672275_SNP [dm3] 2L_9672275_SNP [dm6]	A	G	1.756e^-4	0.591	INTERGENIC
3L	12958942	3L_12958942_SNP [dm3] 3L_12965842_SNP [dm6]	T	G	1.758e^-4	0.591	UPSTREAM Or69a INTRON Or69a
3R	3669272	3R_3669272_SNP [dm3] 3R_7843550_SNP [dm6]	A	T	1.761e^-4	0.591	INTRON CG34384
3R	4952771	3R_4952771_SNP [dm3] 3R_9127049_SNP [dm6]	A	G	1.762e^-4	0.591	INTRON pum
3R	14306960	3R_14306960_SNP [dm3] 3R_18481238_SNP [dm6]	A	G	1.767e^-4	0.591	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7081614	2L_7081614_SNP [dm3] 2L_7081614_SNP [dm6]	A	C	1.776e^-4	0.591	INTRON Pvf2
3L	9870561	3L_9870561_SNP [dm3] 3L_9877461_SNP [dm6]	G	T	1.778e^-4	0.591	INTERGENIC
3R	14351124	3R_14351124_INS [dm3] 3R_18525402_INS [dm6]	T	TG	1.778e^-4	0.591	INTRON fru	TF binding site mE1_TFBS_inv
3R	25723524	3R_25723524_SNP [dm3] 3R_29897802_SNP [dm6]	C	T	1.780e^-4	0.591	UTR_3_PRIME CG31038 INTRON CG31038
3R	13584283	3R_13584283_SNP [dm3] 3R_17758561_SNP [dm6]	T	G	1.784e^-4	0.591	INTRON TyrR
2L	269338	2L_269338_SNP [dm3] 2L_269338_SNP [dm6]	C	A	1.787e^-4	0.591	SYNONYMOUS_CODING CG3345 INTRON CG3645
3R	16233495	3R_16233495_SNP [dm3] 3R_20407773_SNP [dm6]	C	T	1.790e^-4	0.591	SYNONYMOUS_CODING CG4335 UPSTREAM CG10881 INTRON Gfrl
3R	5650568	3R_5650568_SNP [dm3] 3R_9824846_SNP [dm6]	G	T	1.793e^-4	0.591	EXON CR42858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10233113	3R_10233113_DEL [dm3] 3R_14407391_DEL [dm6]	AG	A	1.796e^-4	0.591	INTRON cv-c
3R	10233116	3R_10233116_SNP [dm3] 3R_14407394_SNP [dm6]	T	A	1.796e^-4	0.591	INTRON cv-c
3R	15255490	3R_15255490_SNP [dm3] 3R_19429768_SNP [dm6]	G	C	1.797e^-4	0.591	INTRON CG31221
3R	9691661	3R_9691661_SNP [dm3] 3R_13865939_SNP [dm6]	T	A	1.798e^-4	0.591	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	10345968	3R_10345968_SNP [dm3] 3R_14520246_SNP [dm6]	G	C	1.799e^-4	0.591	UPSTREAM Cyp313a1 INTRON Pde6
X	18071942	X_18071942_SNP [dm3] X_18177909_SNP [dm6]	A	T	1.802e^-4	0.591	UTR_5_PRIME Frq2 DOWNSTREAM Andorra
3L	21194659	3L_21194659_SNP [dm3] 3L_21201559_SNP [dm6]	T	G	1.804e^-4	0.591	UPSTREAM CG33056 INTRON CG33054 & 1 other
3L	20570030	3L_20570030_SNP [dm3] 3L_20576930_SNP [dm6]	A	C	1.808e^-4	0.591	INTERGENIC
2L	5705197	2L_5705197_SNP [dm3] 2L_5705197_SNP [dm6]	A	G	1.808e^-4	0.591	INTERGENIC
X	6165508	X_6165508_SNP [dm3] X_6271475_SNP [dm6]	A	C	1.809e^-4	0.591	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4958329	3R_4958329_SNP [dm3] 3R_9132607_SNP [dm6]	C	T	1.821e^-4	0.591	INTRON pum
3L	16901804	3L_16901804_SNP [dm3] 3L_16908704_SNP [dm6]	C	T	1.822e^-4	0.591	INTRON Lmpt
2L	8375267	2L_8375267_SNP [dm3] 2L_8375267_SNP [dm6]	A	G	1.822e^-4	0.591	SYNONYMOUS_CODING Wdr82 DOWNSTREAM CG13390	TF binding site mE1_TFBS_sens
3R	2618010	3R_2618010_SNP [dm3] 3R_6792288_SNP [dm6]	C	G	1.824e^-4	0.591	UTR_5_PRIME Dfd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19352133	3L_19352133_SNP [dm3] 3L_19359033_SNP [dm6]	T	C	1.829e^-4	0.591	INTRON CG32206
3R	10346325	3R_10346325_SNP [dm3] 3R_14520603_SNP [dm6]	G	A	1.831e^-4	0.591	UPSTREAM Cyp313a1 INTRON Pde6
3R	14695171	3R_14695171_SNP [dm3] 3R_18869449_SNP [dm6]	G	A	1.832e^-4	0.591	INTERGENIC
3R	5160363	3R_5160363_SNP [dm3] 3R_9334641_SNP [dm6]	T	A	1.838e^-4	0.591	UTR_5_PRIME CG8866 UPSTREAM CG8121	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9428956	3R_9428956_SNP [dm3] 3R_13603234_SNP [dm6]	G	A	1.838e^-4	0.591	INTERGENIC
3L	13857595	3L_13857595_SNP [dm3] 3L_13864495_SNP [dm6]	A	G	1.838e^-4	0.591	INTRON CG8745	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	9513229	3R_9513229_SNP [dm3] 3R_13687507_SNP [dm6]	T	C	1.850e^-4	0.592	UPSTREAM omd INTRON flfl
3R	15192101	3R_15192101_SNP [dm3] 3R_19366379_SNP [dm6]	A	T	1.852e^-4	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6902212	3L_6902212_SNP [dm3] 3L_6909112_SNP [dm6]	G	T	1.860e^-4	0.592	INTERGENIC
3R	2627831	3R_2627831_SNP [dm3] 3R_6802109_SNP [dm6]	G	A	1.868e^-4	0.592	UTR_3_PRIME Dfd	TF binding site BDTNP1_TFBS_dl
3L	6109815	3L_6109815_SNP [dm3] 3L_6116715_SNP [dm6]	G	T	1.869e^-4	0.592	INTRON Ets65A	TF binding site mE1_TFBS_Kr
3L	8746341	3L_8746341_SNP [dm3] 3L_8753241_SNP [dm6]	T	A	1.873e^-4	0.592	UPSTREAM Fhos INTERGENIC
2L	5747012	2L_5747012_SNP [dm3] 2L_5747012_SNP [dm6]	T	C	1.874e^-4	0.592	SYNONYMOUS_CODING CG11029 INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8125668	2R_8125668_SNP [dm3] 2R_12238163_SNP [dm6]	A	T	1.880e^-4	0.592	INTERGENIC
3L	13856703	3L_13856703_SNP [dm3] 3L_13863603_SNP [dm6]	C	G	1.882e^-4	0.592	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4974727	3R_4974727_DEL [dm3] 3R_9149005_DEL [dm6]	TAGACA	T	1.886e^-4	0.592	INTRON pum
3R	9795074	3R_9795074_SNP [dm3] 3R_13969352_SNP [dm6]	C	A	1.888e^-4	0.592	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	12768084	2L_12768084_SNP [dm3] 2L_12768084_SNP [dm6]	A	G	1.890e^-4	0.592	INTERGENIC
2L	9672195	2L_9672195_SNP [dm3] 2L_9672195_SNP [dm6]	G	A	1.897e^-4	0.592	INTERGENIC
3R	13871903	3R_13871903_SNP [dm3] 3R_18046181_SNP [dm6]	G	A	1.899e^-4	0.592	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
3L	2420240	3L_2420240_SNP [dm3] 3L_2420240_SNP [dm6]	A	C	1.900e^-4	0.592	INTRON CG45186
3R	14593837	3R_14593837_SNP [dm3] 3R_18768115_SNP [dm6]	A	G	1.900e^-4	0.592	INTRON CG7720
X	8423895	X_8423895_SNP [dm3] X_8529862_SNP [dm6]	A	C	1.903e^-4	0.592	UPSTREAM PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_dl
2R	5815179	2R_5815179_SNP [dm3] 2R_9927674_SNP [dm6]	G	A	1.907e^-4	0.592	INTRON Mef2
3R	10230883	3R_10230883_SNP [dm3] 3R_14405161_SNP [dm6]	A	G	1.910e^-4	0.592	UTR_5_PRIME cv-c INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13673322	3R_13673322_SNP [dm3] 3R_17847600_SNP [dm6]	G	A	1.918e^-4	0.592	INTRON tinc
3R	10575913	3R_10575913_SNP [dm3] 3R_14750191_SNP [dm6]	C	A	1.926e^-4	0.592	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3R	4965273	3R_4965273_SNP [dm3] 3R_9139551_SNP [dm6]	T	G	1.929e^-4	0.592	INTRON pum
2R	11610819	2R_11610819_SNP [dm3] 2R_15723314_SNP [dm6]	T	C	1.930e^-4	0.592	INTERGENIC
3L	19167235	3L_19167235_DEL [dm3] 3L_19174135_DEL [dm6]	GATTATAG	G	1.931e^-4	0.592	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	19219242	3L_19219242_SNP [dm3] 3L_19226142_SNP [dm6]	A	G	1.935e^-4	0.592	INTRON fz2	TF binding site mE1_TFBS_inv
2R	5907309	2R_5907309_SNP [dm3] 2R_10019804_SNP [dm6]	A	T	1.941e^-4	0.592	INTRON Pka-R2
3R	13471833	3R_13471833_DEL [dm3] 3R_17646111_DEL [dm6]	GTTTCAAAGCATCACGCCG...	G	1.944e^-4	0.592	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16815060	3L_16815060_SNP [dm3] 3L_16821960_SNP [dm6]	A	G	1.944e^-4	0.592	INTRON CG13024
3L	11674800	3L_11674800_SNP [dm3] 3L_11681700_SNP [dm6]	A	G	1.949e^-4	0.592	UPSTREAM TfIIEalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14144425	3L_14144425_SNP [dm3] 3L_14151325_SNP [dm6]	T	C	1.954e^-4	0.592	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	5444495	2R_5444495_SNP [dm3] 2R_9556990_SNP [dm6]	C	A	1.960e^-4	0.592	INTERGENIC
3R	5112716	3R_5112716_SNP [dm3] 3R_9286994_SNP [dm6]	T	G	1.962e^-4	0.592	INTERGENIC
3L	6838369	3L_6838369_SNP [dm3] 3L_6845269_SNP [dm6]	C	T	1.962e^-4	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8569347	3R_8569347_SNP [dm3] 3R_12743625_SNP [dm6]	C	A	1.978e^-4	0.592	NON_SYNONYMOUS_CODING CG5999
3L	13859757	3L_13859757_SNP [dm3] 3L_13866657_SNP [dm6]	G	T	1.986e^-4	0.592	NON_SYNONYMOUS_CODING CG8745 DOWNSTREAM dysc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12977084	3L_12977084_SNP [dm3] 3L_12983984_SNP [dm6]	G	A	1.992e^-4	0.592	INTERGENIC
2L	10048281	2L_10048281_SNP [dm3] 2L_10048281_SNP [dm6]	T	A	1.996e^-4	0.592	INTERGENIC
2L	3985286	2L_3985286_SNP [dm3] 2L_3985286_SNP [dm6]	A	T	2.001e^-4	0.592	INTRON fred
3R	10232206	3R_10232206_SNP [dm3] 3R_14406484_SNP [dm6]	G	A	2.003e^-4	0.592	INTRON cv-c
3L	13857510	3L_13857510_SNP [dm3] 3L_13864410_SNP [dm6]	G	A	2.005e^-4	0.592	INTRON CG8745	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	2162995	3R_2162995_SNP [dm3] 3R_6337273_SNP [dm6]	C	A	2.007e^-4	0.592	DOWNSTREAM Osi19 INTERGENIC
3R	13871900	3R_13871900_SNP [dm3] 3R_18046178_SNP [dm6]	A	G	2.012e^-4	0.592	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
3R	4941220	3R_4941220_SNP [dm3] 3R_9115498_SNP [dm6]	T	C	2.015e^-4	0.592	INTRON pum
3L	5949417	3L_5949417_SNP [dm3] 3L_5956317_SNP [dm6]	G	C	2.018e^-4	0.592	INTERGENIC
3L	7314976	3L_7314976_SNP [dm3] 3L_7321876_SNP [dm6]	A	C	2.018e^-4	0.592	NON_SYNONYMOUS_CODING RhoGEF4 DOWNSTREAM CG8607
X	14693864	X_14693864_SNP [dm3] X_14799831_SNP [dm6]	G	T	2.025e^-4	0.592	INTRON rut
2R	16168236	2R_16168236_SNP [dm3] 2R_20280731_SNP [dm6]	T	C	2.029e^-4	0.592	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
3R	15255472	3R_15255472_SNP [dm3] 3R_19429750_SNP [dm6]	C	T	2.029e^-4	0.592	INTRON CG31221
X	2333165	X_2333165_SNP [dm3] X_2439132_SNP [dm6]	C	T	2.036e^-4	0.592	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8384634	3R_8384634_SNP [dm3] 3R_12558912_SNP [dm6]	A	G	2.036e^-4	0.592	INTRON Octbeta2R
3R	14690434	3R_14690434_SNP [dm3] 3R_18864712_SNP [dm6]	G	T	2.037e^-4	0.592	INTERGENIC
3R	5444898	3R_5444898_SNP [dm3] 3R_9619176_SNP [dm6]	G	A	2.039e^-4	0.592	INTRON CG8312
3L	18216310	3L_18216310_SNP [dm3] 3L_18223210_SNP [dm6]	G	T	2.043e^-4	0.592	INTERGENIC
3L	18216311	3L_18216311_SNP [dm3] 3L_18223211_SNP [dm6]	T	C	2.046e^-4	0.592	INTERGENIC
3L	8737864	3L_8737864_SNP [dm3] 3L_8744764_SNP [dm6]	C	G	2.057e^-4	0.592	INTRON Prm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13983446	2L_13983446_SNP [dm3] 2L_13983446_SNP [dm6]	G	A	2.061e^-4	0.592	SYNONYMOUS_CODING rk DOWNSTREAM NimC2
X	17305591	X_17305591_DEL [dm3] X_17411558_DEL [dm6]	GCAAACAG	G	2.067e^-4	0.592	INTERGENIC
2L	10355738	2L_10355738_SNP [dm3] 2L_10355738_SNP [dm6]	C	T	2.074e^-4	0.592	NON_SYNONYMOUS_CODING CG5367
X	5828165	X_5828165_SNP [dm3] X_5934132_SNP [dm6]	G	A	2.076e^-4	0.592	INTRON CG3726
3R	5267284	3R_5267284_SNP [dm3] 3R_9441562_SNP [dm6]	C	G	2.076e^-4	0.592	SYNONYMOUS_CODING ps INTRON ps	TF binding site mE1_TFBS_HSA
2L	10705646	2L_10705646_SNP [dm3] 2L_10705646_SNP [dm6]	C	A	2.081e^-4	0.592	DOWNSTREAM CG6415 INTRON Lip2
3R	13673424	3R_13673424_SNP [dm3] 3R_17847702_SNP [dm6]	G	A	2.085e^-4	0.592	INTRON tinc
3R	7732836	3R_7732836_SNP [dm3] 3R_11907114_SNP [dm6]	A	T	2.089e^-4	0.592	INTRON Cad87A
3R	26256285	3R_26256285_SNP [dm3] 3R_30430563_SNP [dm6]	T	C	2.090e^-4	0.592	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
3R	13471671	3R_13471671_DEL [dm3] 3R_17645949_DEL [dm6]	AT	A	2.092e^-4	0.592	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
X	13006752	X_13006752_SNP [dm3] X_13112719_SNP [dm6]	G	A	2.096e^-4	0.592	UPSTREAM CG43313 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	1862156	3L_1862156_SNP [dm3] 3L_1862156_SNP [dm6]	G	C	2.100e^-4	0.592	UTR_5_PRIME R UPSTREAM R DOWNSTREAM HBS1	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	20839936	3L_20839936_SNP [dm3] 3L_20846836_SNP [dm6]	G	T	2.103e^-4	0.592	INTRON CG32432	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	4973272	3R_4973272_SNP [dm3] 3R_9147550_SNP [dm6]	G	C	2.106e^-4	0.592	INTRON pum	TF binding site BDTNP1_TFBS_twi
3L	13857475	3L_13857475_SNP [dm3] 3L_13864375_SNP [dm6]	A	G	2.107e^-4	0.592	INTRON CG8745	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	5827042	X_5827042_INS [dm3] X_5933009_INS [dm6]	A	AA	2.108e^-4	0.592	INTRON CG3726
3R	10232852	3R_10232852_SNP [dm3] 3R_14407130_SNP [dm6]	A	G	2.109e^-4	0.592	INTRON cv-c
X	11566228	X_11566228_INS [dm3] X_11672195_INS [dm6]	AC	CTT	2.109e^-4	0.592	INTRON Ptp10D	TF binding site mE1_TFBS_cad
3R	15218750	3R_15218750_SNP [dm3] 3R_19393028_SNP [dm6]	A	G	2.114e^-4	0.592	UPSTREAM CG3739 DOWNSTREAM CG18493 INTRON Ino80	TF binding site mE1_TFBS_inv
X	17308848	X_17308848_SNP [dm3] X_17414815_SNP [dm6]	A	C	2.119e^-4	0.592	INTRON CG8611
3R	4974734	3R_4974734_SNP [dm3] 3R_9149012_SNP [dm6]	A	T	2.120e^-4	0.592	INTRON pum
2L	10219579	2L_10219579_SNP [dm3] 2L_10219579_SNP [dm6]	T	C	2.122e^-4	0.592	INTRON Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	4960462	3R_4960462_SNP [dm3] 3R_9134740_SNP [dm6]	T	C	2.123e^-4	0.592	INTRON pum
3R	4961535	3R_4961535_SNP [dm3] 3R_9135813_SNP [dm6]	C	T	2.124e^-4	0.592	INTRON pum
2R	7113630	2R_7113630_SNP [dm3] 2R_11226125_SNP [dm6]	T	A	2.125e^-4	0.592	UTR_3_PRIME CG7737 DOWNSTREAM metro	TF binding site mE1_TFBS_cad
3R	9862721	3R_9862721_SNP [dm3] 3R_14036999_SNP [dm6]	A	G	2.130e^-4	0.592	UPSTREAM CG9922 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13471648	3R_13471648_SNP [dm3] 3R_17645926_SNP [dm6]	T	G	2.135e^-4	0.592	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3R	2750510	3R_2750510_SNP [dm3] 3R_6924788_SNP [dm6]	A	G	2.136e^-4	0.592	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19183610	3L_19183610_SNP [dm3] 3L_19190510_SNP [dm6]	G	T	2.141e^-4	0.592	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14306983	3R_14306983_DEL [dm3] 3R_18481261_DEL [dm6]	TGGCAAAGAATATCTTTTGT...	T	2.142e^-4	0.592	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	274269	2L_274269_SNP [dm3] 2L_274269_SNP [dm6]	A	C	2.144e^-4	0.592	NON_SYNONYMOUS_CODING CG11555 UPSTREAM mbm DOWNSTREAM CG17078	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	11319451	3R_11319451_SNP [dm3] 3R_15493729_SNP [dm6]	A	G	2.145e^-4	0.592	UPSTREAM CG5213 DOWNSTREAM CG5205 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	10226309	3R_10226309_SNP [dm3] 3R_14400587_SNP [dm6]	G	A	2.146e^-4	0.592	INTRON cv-c
3R	5030354	3R_5030354_SNP [dm3] 3R_9204632_SNP [dm6]	G	A	2.146e^-4	0.592	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9729075	3R_9729075_SNP [dm3] 3R_13903353_SNP [dm6]	A	T	2.149e^-4	0.592	INTRON ems	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14926292	3R_14926292_SNP [dm3] 3R_19100570_SNP [dm6]	T	G	2.151e^-4	0.592	INTRON CG6040
3L	10812679	3L_10812679_SNP [dm3] 3L_10819579_SNP [dm6]	C	T	2.151e^-4	0.592	INTERGENIC
2L	3045277	2L_3045277_SNP [dm3] 2L_3045277_SNP [dm6]	G	C	2.151e^-4	0.592	INTRON v_2_k05816
3R	5146791	3R_5146791_SNP [dm3] 3R_9321069_SNP [dm6]	T	C	2.152e^-4	0.592	UPSTREAM HP1e INTRON CG8861
3L	15334111	3L_15334111_SNP [dm3] 3L_15341011_SNP [dm6]	T	A	2.152e^-4	0.592	NON_SYNONYMOUS_CODING Toll-6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2022454	3R_2022454_INS [dm3] 3R_6196732_INS [dm6]	C	CTGGCAATTAGC...	2.161e^-4	0.592	INTERGENIC
2R	5711949	2R_5711949_DEL [dm3] 2R_9824444_DEL [dm6]	TTCTTT	T	2.163e^-4	0.592	INTRON dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19157743	3L_19157743_SNP [dm3] 3L_19164643_SNP [dm6]	T	G	2.165e^-4	0.592	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2881565	3R_2881565_SNP [dm3] 3R_7055843_SNP [dm6]	A	T	2.166e^-4	0.592	SYNONYMOUS_CODING CG1979
3L	13857522	3L_13857522_SNP [dm3] 3L_13864422_SNP [dm6]	A	T	2.172e^-4	0.592	INTRON CG8745	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	9975653	3R_9975653_SNP [dm3] 3R_14149931_SNP [dm6]	G	A	2.173e^-4	0.592	SYNONYMOUS_CODING CG14355
3L	3304944	3L_3304944_SNP [dm3] 3L_3304944_SNP [dm6]	G	A	2.176e^-4	0.592	INTRON ZnT63C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	3708442	3R_3708442_SNP [dm3] 3R_7882720_SNP [dm6]	G	A	2.178e^-4	0.592	INTRON CG17816
2L	989487	2L_989487_SNP [dm3] 2L_989487_SNP [dm6]	T	G	2.179e^-4	0.592	EXON CR44801	TF binding site mE1_TFBS_chinmo
3L	13857588	3L_13857588_SNP [dm3] 3L_13864488_SNP [dm6]	C	A	2.190e^-4	0.592	INTRON CG8745	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	5132005	3L_5132005_SNP [dm3] 3L_5138905_SNP [dm6]	A	G	2.195e^-4	0.592	SYNONYMOUS_CODING Prpk UPSTREAM CHMP2B DOWNSTREAM CG4611	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5949334	3L_5949334_SNP [dm3] 3L_5956234_SNP [dm6]	G	A	2.196e^-4	0.592	INTERGENIC
3L	5949343	3L_5949343_SNP [dm3] 3L_5956243_SNP [dm6]	C	T	2.196e^-4	0.592	INTERGENIC
3L	16043957	3L_16043957_DEL [dm3] 3L_16050857_DEL [dm6]	TT	T	2.202e^-4	0.592	UTR_5_PRIME th UPSTREAM th DOWNSTREAM CR43951	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	846363	2L_846363_SNP [dm3] 2L_846363_SNP [dm6]	C	G	2.207e^-4	0.592	INTRON drongo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7478327	3L_7478327_SNP [dm3] 3L_7485227_SNP [dm6]	C	G	2.208e^-4	0.592	UPSTREAM mthl6 INTERGENIC
X	4097967	X_4097967_SNP [dm3] X_4203934_SNP [dm6]	A	G	2.211e^-4	0.592	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5442559	3L_5442559_SNP [dm3] 3L_5449459_SNP [dm6]	G	T	2.212e^-4	0.592	INTERGENIC
2L	3054611	2L_3054611_SNP [dm3] 2L_3054611_SNP [dm6]	T	C	2.218e^-4	0.592	SYNONYMOUS_CODING v_2_k05816	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4953008	3R_4953008_SNP [dm3] 3R_9127286_SNP [dm6]	T	C	2.221e^-4	0.592	INTRON pum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1862154	3L_1862154_SNP [dm3] 3L_1862154_SNP [dm6]	T	G	2.225e^-4	0.592	UTR_5_PRIME R UPSTREAM R DOWNSTREAM HBS1	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5124281	3L_5124281_SNP [dm3] 3L_5131181_SNP [dm6]	C	G	2.235e^-4	0.592	UPSTREAM CG15212 DOWNSTREAM CG4597 INTERGENIC
3R	4247293	3R_4247293_SNP [dm3] 3R_8421571_SNP [dm6]	T	C	2.236e^-4	0.592	UPSTREAM Obp85a INTRON CG45263
3R	10059186	3R_10059186_SNP [dm3] 3R_14233464_SNP [dm6]	A	G	2.237e^-4	0.592	INTERGENIC
3R	10576008	3R_10576008_DEL [dm3] 3R_14750286_DEL [dm6]	AT	A	2.243e^-4	0.592	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3L	3146826	3L_3146826_SNP [dm3] 3L_3146826_SNP [dm6]	G	A	2.246e^-4	0.592	SYNONYMOUS_CODING CG12082	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	10441380	2R_10441380_SNP [dm3] 2R_14553875_SNP [dm6]	G	A	2.254e^-4	0.592	NON_SYNONYMOUS_CODING CG43919 INTRON ttv
3R	9725180	3R_9725180_SNP [dm3] 3R_13899458_SNP [dm6]	A	T	2.259e^-4	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	989575	2L_989575_SNP [dm3] 2L_989575_SNP [dm6]	T	C	2.259e^-4	0.592	EXON CR44801	TF binding site mE1_TFBS_chinmo
3L	19474935	3L_19474935_SNP [dm3] 3L_19481835_SNP [dm6]	C	A	2.260e^-4	0.592	INTERGENIC
2L	9083384	2L_9083384_MNP [dm3] 2L_9083384_MNP [dm6]	CTT	TAA	2.263e^-4	0.592	UPSTREAM Toll-4 INTERGENIC
3R	5414296	3R_5414296_SNP [dm3] 3R_9588574_SNP [dm6]	C	A	2.267e^-4	0.592	SYNONYMOUS_CODING P58IPK DOWNSTREAM bocksbeutel	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10183629	3R_10183629_SNP [dm3] 3R_14357907_SNP [dm6]	G	A	2.271e^-4	0.592	DOWNSTREAM CG31320 INTRON NK7.1
3L	9965595	3L_9965595_SNP [dm3] 3L_9972495_SNP [dm6]	T	A	2.271e^-4	0.592	UPSTREAM vnc & 2 others INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	2360111	3R_2360111_SNP [dm3] 3R_6534389_SNP [dm6]	T	C	2.274e^-4	0.592	INTRON dpr11	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	21484084	3R_21484084_SNP [dm3] 3R_25658362_SNP [dm6]	G	A	2.281e^-4	0.592	INTRON Tnks
X	10045997	X_10045997_SNP [dm3] X_10151964_SNP [dm6]	G	A	2.282e^-4	0.592	INTRON CR44894
3R	4958573	3R_4958573_SNP [dm3] 3R_9132851_SNP [dm6]	G	T	2.283e^-4	0.592	INTRON pum
2L	1979029	2L_1979029_SNP [dm3] 2L_1979029_SNP [dm6]	C	T	2.283e^-4	0.592	SYNONYMOUS_CODING CG15356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10188520	3R_10188520_SNP [dm3] 3R_14362798_SNP [dm6]	T	G	2.284e^-4	0.592	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13898839	3L_13898839_SNP [dm3] 3L_13905739_SNP [dm6]	G	T	2.291e^-4	0.592	INTERGENIC
3L	10273997	3L_10273997_DEL [dm3] 3L_10280897_DEL [dm6]	ACCATTTGTTTGCCCC...	A	2.291e^-4	0.592	INTERGENIC
2L	4132781	2L_4132781_SNP [dm3] 2L_4132781_SNP [dm6]	C	T	2.291e^-4	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	5583484	X_5583484_SNP [dm3] X_5689451_SNP [dm6]	C	T	2.294e^-4	0.592	UTR_5_PRIME CG3160 UPSTREAM cv DOWNSTREAM CR45525	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18216241	3L_18216241_SNP [dm3] 3L_18223141_SNP [dm6]	T	G	2.297e^-4	0.592	INTERGENIC
3R	8131489	3R_8131489_SNP [dm3] 3R_12305767_SNP [dm6]	C	G	2.299e^-4	0.592	INTERGENIC
2L	9962192	2L_9962192_SNP [dm3] 2L_9962192_SNP [dm6]	T	A	2.310e^-4	0.592	DOWNSTREAM CR43683 INTRON CG5850	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	13471319	3R_13471319_SNP [dm3] 3R_17645597_SNP [dm6]	C	G	2.310e^-4	0.592	UPSTREAM tRNA:CR31578 & 2 others DOWNSTREAM CG43175 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	16040809	3L_16040809_SNP [dm3] 3L_16047709_SNP [dm6]	A	T	2.311e^-4	0.592	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3L	8746356	3L_8746356_SNP [dm3] 3L_8753256_SNP [dm6]	G	T	2.317e^-4	0.592	UPSTREAM Fhos INTERGENIC
2R	5722389	2R_5722389_SNP [dm3] 2R_9834884_SNP [dm6]	G	A	2.319e^-4	0.592	INTRON hebe
X	6964458	X_6964458_SNP [dm3] X_7070425_SNP [dm6]	T	C	2.320e^-4	0.592	SPLICE_SITE_REGION CG4607 INTRON CG4607
2L	8151805	2L_8151805_SNP [dm3] 2L_8151805_SNP [dm6]	A	T	2.329e^-4	0.592	INTRON CG8552 & 1 other
X	13006640	X_13006640_SNP [dm3] X_13112607_SNP [dm6]	C	A	2.338e^-4	0.592	UPSTREAM CG43313 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7042083	2L_7042083_SNP [dm3] 2L_7042083_SNP [dm6]	T	G	2.344e^-4	0.592	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9333427	2R_9333427_SNP [dm3] 2R_13445922_SNP [dm6]	A	G	2.345e^-4	0.592	SYNONYMOUS_CODING CG30062 UPSTREAM cnn INTRON cnn	TF binding site mE1_TFBS_HSA
3L	19384513	3L_19384513_SNP [dm3] 3L_19391413_SNP [dm6]	A	G	2.349e^-4	0.592	INTRON CG32206
3L	21454359	3L_21454359_SNP [dm3] 3L_21461259_SNP [dm6]	T	A	2.352e^-4	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	12209419	3R_12209419_SNP [dm3] 3R_16383697_SNP [dm6]	C	T	2.352e^-4	0.592	INTRON ss	regulatory region REDfly_CRMs
X	17576183	X_17576183_SNP [dm3] X_17682150_SNP [dm6]	G	C	2.353e^-4	0.592	INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13471983	3R_13471983_SNP [dm3] 3R_17646261_SNP [dm6]	T	C	2.354e^-4	0.592	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10225962	3R_10225962_SNP [dm3] 3R_14400240_SNP [dm6]	C	T	2.355e^-4	0.592	INTRON cv-c	TF binding site mE1_TFBS_Trl
3R	10628531	3R_10628531_SNP [dm3] 3R_14802809_SNP [dm6]	C	A	2.358e^-4	0.592	SYNONYMOUS_CODING CG14857
3R	4949659	3R_4949659_SNP [dm3] 3R_9123937_SNP [dm6]	G	T	2.360e^-4	0.592	INTRON pum
X	16004268	X_16004268_SNP [dm3] X_16110235_SNP [dm6]	T	C	2.362e^-4	0.592	INTERGENIC
2L	10797026	2L_10797026_SNP [dm3] 2L_10797026_SNP [dm6]	T	C	2.365e^-4	0.592	INTRON CG31869
3R	14130032	3R_14130032_SNP [dm3] 3R_18304310_SNP [dm6]	C	T	2.365e^-4	0.592	SYNONYMOUS_CODING PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4960073	3R_4960073_SNP [dm3] 3R_9134351_SNP [dm6]	C	T	2.366e^-4	0.592	INTRON pum
3R	5311108	3R_5311108_SNP [dm3] 3R_9485386_SNP [dm6]	A	T	2.367e^-4	0.592	INTRON CG16779
3R	5140438	3R_5140438_SNP [dm3] 3R_9314716_SNP [dm6]	A	T	2.368e^-4	0.592	INTRON CG8861
3L	8856142	3L_8856142_DEL [dm3] 3L_8863042_DEL [dm6]	TT	T	2.371e^-4	0.592	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	9965758	3L_9965758_SNP [dm3] 3L_9972658_SNP [dm6]	T	C	2.377e^-4	0.592	UPSTREAM vnc & 2 others INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19396282	2R_19396282_SNP [dm3] 2R_23508759_SNP [dm6]	G	A	2.378e^-4	0.592	UPSTREAM CR43794 INTERGENIC
2L	12323840	2L_12323840_SNP [dm3] 2L_12323840_SNP [dm6]	G	A	2.389e^-4	0.592	INTERGENIC
3R	4973422	3R_4973422_SNP [dm3] 3R_9147700_SNP [dm6]	A	G	2.389e^-4	0.592	INTRON pum
3L	9965004	3L_9965004_SNP [dm3] 3L_9971904_SNP [dm6]	C	T	2.390e^-4	0.592	SYNONYMOUS_CODING CG6674 UPSTREAM vnc & 1 other DOWNSTREAM Nc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1073164	2L_1073164_SNP [dm3] 2L_1073164_SNP [dm6]	G	A	2.394e^-4	0.592	INTRON S	TF binding site BDTNP1_TFBS_dl
2L	14959399	2L_14959399_SNP [dm3] 2L_14959399_SNP [dm6]	T	G	2.395e^-4	0.592	INTRON CG42313
X	3898939	X_3898939_SNP [dm3] X_4004906_SNP [dm6]	A	G	2.397e^-4	0.592	INTERGENIC
3R	8379714	3R_8379714_SNP [dm3] 3R_12553992_SNP [dm6]	A	T	2.398e^-4	0.592	INTRON Octbeta2R
3R	4974743	3R_4974743_DEL [dm3] 3R_9149021_DEL [dm6]	CATCGAGCATAAATAAATAA...	C	2.399e^-4	0.592	INTRON pum
2L	6407180	2L_6407180_SNP [dm3] 2L_6407180_SNP [dm6]	T	C	2.402e^-4	0.592	INTRON CG42368
3R	5138623	3R_5138623_SNP [dm3] 3R_9312901_SNP [dm6]	G	A	2.404e^-4	0.592	INTRON CG8861	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2479945	3R_2479945_SNP [dm3] 3R_6654223_SNP [dm6]	C	A	2.415e^-4	0.593	INTRON Taf1
3L	10066572	3L_10066572_SNP [dm3] 3L_10073472_SNP [dm6]	C	T	2.415e^-4	0.593	INTRON dpr6
3L	19543894	3L_19543894_SNP [dm3] 3L_19550794_SNP [dm6]	T	A	2.427e^-4	0.593	NON_SYNONYMOUS_CODING l_3_76BDr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19430270	3L_19430270_SNP [dm3] 3L_19437170_SNP [dm6]	C	T	2.428e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	17411541	3L_17411541_SNP [dm3] 3L_17418441_SNP [dm6]	C	T	2.432e^-4	0.593	INTRON blot
2L	3443194	2L_3443194_SNP [dm3] 2L_3443194_SNP [dm6]	T	A	2.433e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	19178774	3L_19178774_SNP [dm3] 3L_19185674_SNP [dm6]	C	T	2.435e^-4	0.593	UTR_5_PRIME fz2
2L	3003551	2L_3003551_SNP [dm3] 2L_3003551_SNP [dm6]	T	G	2.436e^-4	0.593	INTRON CG17265	TF binding site mE1_TFBS_cad
2R	5834955	2R_5834955_SNP [dm3] 2R_9947450_SNP [dm6]	G	T	2.440e^-4	0.593	INTRON Mef2	TF binding site mE1_TFBS_sens
2R	14805204	2R_14805204_SNP [dm3] 2R_18917699_SNP [dm6]	T	G	2.454e^-4	0.593	INTRON sano
X	17308844	X_17308844_SNP [dm3] X_17414811_SNP [dm6]	A	G	2.455e^-4	0.593	INTRON CG8611
2L	6986346	2L_6986346_SNP [dm3] 2L_6986346_SNP [dm6]	A	T	2.456e^-4	0.593	INTRON uif EXON CR44326
2L	717230	2L_717230_SNP [dm3] 2L_717230_SNP [dm6]	G	T	2.460e^-4	0.593	INTERGENIC
3L	20833140	3L_20833140_SNP [dm3] 3L_20840040_SNP [dm6]	T	A	2.462e^-4	0.593	INTRON CSN3
2L	260081	2L_260081_SNP [dm3] 2L_260081_SNP [dm6]	G	T	2.463e^-4	0.593	UTR_3_PRIME CG17075 INTRON CG3645
3L	7397109	3L_7397109_SNP [dm3] 3L_7404009_SNP [dm6]	C	T	2.464e^-4	0.593	UTR_5_PRIME CG8560 UPSTREAM CG8560
3L	18216243	3L_18216243_SNP [dm3] 3L_18223143_SNP [dm6]	C	A	2.468e^-4	0.593	INTERGENIC
2L	19132359	2L_19132359_SNP [dm3] 2L_19132359_SNP [dm6]	C	T	2.472e^-4	0.593	UTR_5_PRIME l_2_37Ce UPSTREAM Aats-asn DOWNSTREAM l_2_37Cg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	13859224	3L_13859224_SNP [dm3] 3L_13866124_SNP [dm6]	A	C	2.482e^-4	0.593	INTRON CG8745	TF binding site BDTNP1_TFBS_dl
3L	2145864	3L_2145864_SNP [dm3] 3L_2145864_SNP [dm6]	G	T	2.483e^-4	0.593	INTRON zormin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9968765	2L_9968765_SNP [dm3] 2L_9968765_SNP [dm6]	A	G	2.485e^-4	0.593	DOWNSTREAM RpL13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4150606	X_4150606_SNP [dm3] X_4256573_SNP [dm6]	G	T	2.494e^-4	0.593	INTERGENIC
3R	18460799	3R_18460799_SNP [dm3] 3R_22635077_SNP [dm6]	G	A	2.495e^-4	0.593	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	16227308	3R_16227308_SNP [dm3] 3R_20401586_SNP [dm6]	T	C	2.499e^-4	0.593	INTRON Gfrl
2R	11160562	2R_11160562_SNP [dm3] 2R_15273057_SNP [dm6]	T	G	2.501e^-4	0.593	INTRON Trpm
3R	7481589	3R_7481589_SNP [dm3] 3R_11655867_SNP [dm6]	A	G	2.508e^-4	0.593	UPSTREAM CG42327 DOWNSTREAM Elp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	19208419	3L_19208419_SNP [dm3] 3L_19215319_SNP [dm6]	C	T	2.520e^-4	0.593	INTRON fz2
2R	17787837	2R_17787837_SNP [dm3] 2R_21900332_SNP [dm6]	G	C	2.522e^-4	0.593	INTRON Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4948176	3R_4948176_SNP [dm3] 3R_9122454_SNP [dm6]	G	A	2.522e^-4	0.593	INTRON pum
3L	13864134	3L_13864134_SNP [dm3] 3L_13871034_SNP [dm6]	A	T	2.523e^-4	0.593	UTR_3_PRIME dysc
3L	18216246	3L_18216246_DEL [dm3] 3L_18223146_DEL [dm6]	AG	A	2.534e^-4	0.593	INTERGENIC
3L	13859083	3L_13859083_SNP [dm3] 3L_13865983_SNP [dm6]	C	T	2.536e^-4	0.593	INTRON CG8745	TF binding site BDTNP1_TFBS_dl
3L	9790543	3L_9790543_SNP [dm3] 3L_9797443_SNP [dm6]	C	G	2.542e^-4	0.593	SYNONYMOUS_CODING Zasp67 UPSTREAM Ilp1
3L	18216238	3L_18216238_DEL [dm3] 3L_18223138_DEL [dm6]	TA	T	2.543e^-4	0.593	INTERGENIC
X	14528297	X_14528297_SNP [dm3] X_14634264_SNP [dm6]	T	A	2.556e^-4	0.593	INTRON NetA
X	5557869	X_5557869_SNP [dm3] X_5663836_SNP [dm6]	T	A	2.565e^-4	0.593	UPSTREAM CG42265 DOWNSTREAM Sirt4 EXON CR45520
2L	1053529	2L_1053529_SNP [dm3] 2L_1053529_SNP [dm6]	C	T	2.565e^-4	0.593	INTRON S	TF binding site mE1_TFBS_cad
2L	5933827	2L_5933827_SNP [dm3] 2L_5933827_SNP [dm6]	G	A	2.566e^-4	0.593	INTRON dsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11844785	3R_11844785_SNP [dm3] 3R_16019063_SNP [dm6]	C	A	2.570e^-4	0.593	UTR_3_PRIME GATAe
3L	10940673	3L_10940673_SNP [dm3] 3L_10947573_SNP [dm6]	T	A	2.572e^-4	0.593	INTERGENIC
3L	13856140	3L_13856140_SNP [dm3] 3L_13863040_SNP [dm6]	A	G	2.576e^-4	0.593	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	15741847	X_15741847_SNP [dm3] X_15847814_SNP [dm6]	A	C	2.579e^-4	0.593	UTR_3_PRIME CG8578 DOWNSTREAM sun & 1 other
2R	10053060	2R_10053060_SNP [dm3] 2R_14165555_SNP [dm6]	T	C	2.580e^-4	0.593	UPSTREAM Tango7 INTRON CG8323	TF binding site mE1_TFBS_HSA
3L	19486465	3L_19486465_SNP [dm3] 3L_19493365_SNP [dm6]	A	T	2.581e^-4	0.593	UTR_3_PRIME CG9449 INTRON CG9449
X	6964410	X_6964410_SNP [dm3] X_7070377_SNP [dm6]	C	T	2.581e^-4	0.593	INTRON CG4607
X	5184912	X_5184912_SNP [dm3] X_5290879_SNP [dm6]	A	T	2.582e^-4	0.593	INTERGENIC
3R	10743515	3R_10743515_INS [dm3] 3R_14917793_INS [dm6]	G	GG	2.591e^-4	0.593	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9962189	2L_9962189_SNP [dm3] 2L_9962189_SNP [dm6]	A	C	2.593e^-4	0.593	DOWNSTREAM CR43683 INTRON CG5850	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	19158499	3L_19158499_DEL [dm3] 3L_19165399_DEL [dm6]	CATTTCTC	C	2.593e^-4	0.593	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21480574	3R_21480574_SNP [dm3] 3R_25654852_SNP [dm6]	A	T	2.594e^-4	0.593	INTRON Tnks	TF binding site mE1_TFBS_chinmo
3L	9693585	3L_9693585_SNP [dm3] 3L_9700485_SNP [dm6]	A	G	2.596e^-4	0.593	DOWNSTREAM CG6761 & 1 other INTERGENIC
3L	14324616	3L_14324616_SNP [dm3] 3L_14331516_SNP [dm6]	G	A	2.596e^-4	0.593	INTRON fz
3R	5193787	3R_5193787_SNP [dm3] 3R_9368065_SNP [dm6]	C	A	2.596e^-4	0.593	UTR_3_PRIME FER DOWNSTREAM CG8129
3L	5949498	3L_5949498_SNP [dm3] 3L_5956398_SNP [dm6]	C	T	2.596e^-4	0.593	INTERGENIC
3R	11436229	3R_11436229_SNP [dm3] 3R_15610507_SNP [dm6]	A	T	2.600e^-4	0.593	INTERGENIC
3L	13455023	3L_13455023_SNP [dm3] 3L_13461923_SNP [dm6]	C	A	2.601e^-4	0.593	SYNONYMOUS_CODING CG10738	TF binding site mE1_TFBS_cad
2L	13172342	2L_13172342_SNP [dm3] 2L_13172342_SNP [dm6]	G	A	2.602e^-4	0.593	SYNONYMOUS_CODING Sfmbt
3L	4301851	3L_4301851_SNP [dm3] 3L_4301851_SNP [dm6]	C	A	2.603e^-4	0.593	INTRON dyl
3L	12256954	3L_12256954_SNP [dm3] 3L_12263854_SNP [dm6]	A	G	2.605e^-4	0.593	INTRON app
2L	15288432	2L_15288432_SNP [dm3] 2L_15288432_SNP [dm6]	G	T	2.607e^-4	0.593	INTERGENIC
2L	5705196	2L_5705196_SNP [dm3] 2L_5705196_SNP [dm6]	G	A	2.614e^-4	0.593	INTERGENIC
3L	5101000	3L_5101000_SNP [dm3] 3L_5101000_SNP [dm6]	T	C	2.614e^-4	0.593	INTERGENIC
3L	14256153	3L_14256153_INS [dm3] 3L_14263053_INS [dm6]	C	CAGCCGGG	2.627e^-4	0.593	INTERGENIC
3L	12991393	3L_12991393_SNP [dm3] 3L_12998293_SNP [dm6]	A	G	2.634e^-4	0.593	DOWNSTREAM CG11262 INTERGENIC
2L	11822961	2L_11822961_SNP [dm3] 2L_11822961_SNP [dm6]	C	T	2.636e^-4	0.593	INTRON Pde1c
3R	9999114	3R_9999114_SNP [dm3] 3R_14173392_SNP [dm6]	A	G	2.639e^-4	0.593	UTR_3_PRIME Dop1R1
3L	14099728	3L_14099728_SNP [dm3] 3L_14106628_SNP [dm6]	A	G	2.642e^-4	0.593	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10053377	2L_10053377_INS [dm3] 2L_10053377_INS [dm6]	T	TTT	2.643e^-4	0.593	UPSTREAM CR44875 & 1 other INTERGENIC
3L	9965169	3L_9965169_SNP [dm3] 3L_9972069_SNP [dm6]	C	G	2.645e^-4	0.593	UPSTREAM vnc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	9965359	3L_9965359_SNP [dm3] 3L_9972259_SNP [dm6]	A	C	2.645e^-4	0.593	UPSTREAM vnc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	19477959	2R_19477959_SNP [dm3] 2R_23590436_SNP [dm6]	G	C	2.646e^-4	0.593	INTRON apt
2R	8093874	2R_8093874_SNP [dm3] 2R_12206369_SNP [dm6]	G	A	2.646e^-4	0.593	EXON CR45276	TF binding site mE1_TFBS_cad
3L	19158424	3L_19158424_DEL [dm3] 3L_19165324_DEL [dm6]	GACG	TT	2.647e^-4	0.593	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3L	3522305	3L_3522305_SNP [dm3] 3L_3522305_SNP [dm6]	G	A	2.647e^-4	0.593	DOWNSTREAM CR45043 INTRON Eip63E
2L	3048945	2L_3048945_DEL [dm3] 2L_3048945_DEL [dm6]	TT	T	2.648e^-4	0.593	DOWNSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13859269	3L_13859269_SNP [dm3] 3L_13866169_SNP [dm6]	T	A	2.652e^-4	0.593	INTRON CG8745	TF binding site BDTNP1_TFBS_dl
2R	8127607	2R_8127607_DEL [dm3] 2R_12240102_DEL [dm6]	GCC	T	2.654e^-4	0.593	UPSTREAM CG13170 INTERGENIC
3L	12685551	3L_12685551_DEL [dm3] 3L_12692451_DEL [dm6]	ATAAAA	A	2.662e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	12842109	2L_12842109_SNP [dm3] 2L_12842109_SNP [dm6]	T	G	2.669e^-4	0.593	DOWNSTREAM CR44970 & 1 other INTERGENIC
2R	10557872	2R_10557872_SNP [dm3] 2R_14670367_SNP [dm6]	G	A	2.671e^-4	0.593	NON_SYNONYMOUS_CODING CG12866 UTR_3_PRIME CG12866
3L	722301	3L_722301_SNP [dm3] 3L_722301_SNP [dm6]	T	C	2.674e^-4	0.593	INTERGENIC
3R	3722573	3R_3722573_INS [dm3] 3R_7896851_INS [dm6]	A	AGACTCGCAA	2.679e^-4	0.593	INTRON mRpS9 & 1 other
X	2630569	X_2630569_SNP [dm3] X_2736536_SNP [dm6]	A	T	2.681e^-4	0.593	SYNONYMOUS_CODING crm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19167274	3L_19167274_SNP [dm3] 3L_19174174_SNP [dm6]	G	A	2.686e^-4	0.593	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13856273	3L_13856273_SNP [dm3] 3L_13863173_SNP [dm6]	A	G	2.689e^-4	0.593	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6154126	2L_6154126_SNP [dm3] 2L_6154126_SNP [dm6]	T	A	2.694e^-4	0.593	DOWNSTREAM Muc26B INTRON CG31639	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9562668	3L_9562668_SNP [dm3] 3L_9569568_SNP [dm6]	C	T	2.694e^-4	0.593	INTRON CG42673
3L	11101787	3L_11101787_INS [dm3] 3L_11108687_INS [dm6]	C	CACTAC	2.696e^-4	0.593	UTR_3_PRIME CG12522 DOWNSTREAM CG34012
3L	11101795	3L_11101795_DEL [dm3] 3L_11108695_DEL [dm6]	ATA	T	2.696e^-4	0.593	UTR_3_PRIME CG12522 UPSTREAM CG7638 DOWNSTREAM CG34012
3R	10230874	3R_10230874_SNP [dm3] 3R_14405152_SNP [dm6]	T	C	2.697e^-4	0.593	UTR_5_PRIME cv-c INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8092581	2R_8092581_SNP [dm3] 2R_12205076_SNP [dm6]	C	T	2.699e^-4	0.593	INTERGENIC
3R	10166268	3R_10166268_SNP [dm3] 3R_14340546_SNP [dm6]	C	A	2.700e^-4	0.593	INTRON NK7.1
3R	1323381	3R_1323381_SNP [dm3] 3R_5497659_SNP [dm6]	C	G	2.700e^-4	0.593	INTRON CG31547	TF binding site mE1_TFBS_cad
2L	1264772	2L_1264772_SNP [dm3] 2L_1264772_SNP [dm6]	G	A	2.705e^-4	0.593	INTRON robo3
2R	16168235	2R_16168235_SNP [dm3] 2R_20280730_SNP [dm6]	A	G	2.708e^-4	0.593	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2L	9083398	2L_9083398_SNP [dm3] 2L_9083398_SNP [dm6]	A	G	2.714e^-4	0.594	UPSTREAM Toll-4 INTERGENIC
3L	9965403	3L_9965403_SNP [dm3] 3L_9972303_SNP [dm6]	G	A	2.717e^-4	0.594	UPSTREAM vnc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16044000	3L_16044000_SNP [dm3] 3L_16050900_SNP [dm6]	G	C	2.720e^-4	0.594	UTR_5_PRIME th UPSTREAM th DOWNSTREAM CR43951	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	12451359	3L_12451359_SNP [dm3] 3L_12458259_SNP [dm6]	G	C	2.723e^-4	0.594	INTERGENIC
3R	4985097	3R_4985097_SNP [dm3] 3R_9159375_SNP [dm6]	A	C	2.727e^-4	0.594	INTRON pum
3R	14776585	3R_14776585_SNP [dm3] 3R_18950863_SNP [dm6]	C	T	2.732e^-4	0.594	INTRON CG42613 & 1 other
3R	25519201	3R_25519201_SNP [dm3] 3R_29693479_SNP [dm6]	C	T	2.734e^-4	0.594	SYNONYMOUS_CODING dmrt99B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6078825	3R_6078825_SNP [dm3] 3R_10253103_SNP [dm6]	C	A	2.736e^-4	0.594	SYNONYMOUS_CODING CG3999
3L	18231157	3L_18231157_SNP [dm3] 3L_18238057_SNP [dm6]	A	G	2.737e^-4	0.594	INTERGENIC
3L	13298757	3L_13298757_SNP [dm3] 3L_13305657_SNP [dm6]	C	T	2.744e^-4	0.594	INTERGENIC
2L	15163219	2L_15163219_SNP [dm3] 2L_15163219_SNP [dm6]	A	G	2.747e^-4	0.594	UTR_3_PRIME CG4168
3R	1323212	3R_1323212_SNP [dm3] 3R_5497490_SNP [dm6]	T	A	2.750e^-4	0.594	INTRON CG31547	TF binding site mE1_TFBS_cad
2L	20944416	2L_20944416_DEL [dm3] 2L_20944416_DEL [dm6]	CC	C	2.756e^-4	0.594	INTERGENIC
2L	13374311	2L_13374311_SNP [dm3] 2L_13374311_SNP [dm6]	C	T	2.764e^-4	0.594	START_GAINED CG6565 UTR_5_PRIME CG6565 UPSTREAM CG9305	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	14050806	3L_14050806_SNP [dm3] 3L_14057706_SNP [dm6]	C	T	2.765e^-4	0.594	INTRON CG32138
2L	1069101	2L_1069101_SNP [dm3] 2L_1069101_SNP [dm6]	T	A	2.765e^-4	0.594	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	12844907	3L_12844907_SNP [dm3] 3L_12851807_SNP [dm6]	A	G	2.766e^-4	0.594	SPLICE_SITE_REGION Wbp2 SYNONYMOUS_CODING Wbp2 INTRON Wbp2
2R	7721450	2R_7721450_SNP [dm3] 2R_11833945_SNP [dm6]	A	C	2.770e^-4	0.594	INTRON Sobp
2R	8122215	2R_8122215_SNP [dm3] 2R_12234710_SNP [dm6]	C	T	2.774e^-4	0.594	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	12941205	3L_12941205_SNP [dm3] 3L_12948105_SNP [dm6]	C	A	2.777e^-4	0.594	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9708712	3L_9708712_SNP [dm3] 3L_9715612_SNP [dm6]	A	G	2.780e^-4	0.594	INTRON vsg
3R	769083	3R_769083_DEL [dm3] 3R_4943361_DEL [dm6]	AT	A	2.793e^-4	0.596	INTRON Cdep	transposable element FlyBase
2L	9083392	2L_9083392_INS [dm3] 2L_9083392_INS [dm6]	T	TATTTATTAGATTTTTA...	2.795e^-4	0.596	UPSTREAM Toll-4 INTERGENIC
2L	21936726	2L_21936726_SNP [dm3] 2L_21936726_SNP [dm6]	G	A	2.795e^-4	0.596	INTERGENIC	transposable element FlyBase
2L	11497763	2L_11497763_SNP [dm3] 2L_11497763_SNP [dm6]	A	T	2.804e^-4	0.597	SYNONYMOUS_CODING CG6488	TF binding site mE1_TFBS_cad
3L	9977057	3L_9977057_SNP [dm3] 3L_9983957_SNP [dm6]	T	C	2.810e^-4	0.597	INTRON dpr6
3L	486221	3L_486221_SNP [dm3] 3L_486221_SNP [dm6]	T	C	2.813e^-4	0.597	INTRON klar	TF binding site BDTNP1_TFBS_dl
3R	15738659	3R_15738659_SNP [dm3] 3R_19912937_SNP [dm6]	T	C	2.817e^-4	0.598	SYNONYMOUS_CODING RhoGAP92B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5828644	X_5828644_SNP [dm3] X_5934611_SNP [dm6]	G	A	2.824e^-4	0.599	INTRON CG3726
2L	9083309	2L_9083309_SNP [dm3] 2L_9083309_SNP [dm6]	C	G	2.834e^-4	0.6	UPSTREAM Toll-4 INTERGENIC
3R	3804388	3R_3804388_INS [dm3] 3R_7978666_INS [dm6]	C	CC	2.838e^-4	0.6	UPSTREAM CD98hc & 1 other DOWNSTREAM Sfp84E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	1073165	2L_1073165_SNP [dm3] 2L_1073165_SNP [dm6]	A	C	2.842e^-4	0.6	INTRON S	TF binding site BDTNP1_TFBS_dl
2L	16219131	2L_16219131_SNP [dm3] 2L_16219131_SNP [dm6]	A	G	2.873e^-4	0.605	INTERGENIC
3R	9995513	3R_9995513_DEL [dm3] 3R_14169791_DEL [dm6]	ATTTCATAGATGTTGTGCAT...	A	2.875e^-4	0.605	UTR_3_PRIME Dop1R1
3L	4032405	3L_4032405_SNP [dm3] 3L_4032405_SNP [dm6]	T	G	2.884e^-4	0.605	DOWNSTREAM Gr64b & 1 other INTRON Gr64d & 1 other
3R	4974742	3R_4974742_SNP [dm3] 3R_9149020_SNP [dm6]	G	T	2.886e^-4	0.605	INTRON pum
3L	18216345	3L_18216345_SNP [dm3] 3L_18223245_SNP [dm6]	G	C	2.886e^-4	0.605	INTERGENIC
2L	4823493	2L_4823493_SNP [dm3] 2L_4823493_SNP [dm6]	G	C	2.886e^-4	0.605	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	14324932	3R_14324932_SNP [dm3] 3R_18499210_SNP [dm6]	G	A	2.888e^-4	0.605	INTRON fru
3L	9965658	3L_9965658_SNP [dm3] 3L_9972558_SNP [dm6]	C	T	2.893e^-4	0.606	UPSTREAM vnc & 2 others INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16168258	2R_16168258_SNP [dm3] 2R_20280753_SNP [dm6]	C	T	2.898e^-4	0.606	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
X	4764018	X_4764018_SNP [dm3] X_4869985_SNP [dm6]	G	A	2.911e^-4	0.608	INTRON CG42594
3R	12988423	3R_12988423_INS [dm3] 3R_17162701_INS [dm6]	A	AAACA	2.921e^-4	0.608	INTRON Mur89F
3R	10743536	3R_10743536_SNP [dm3] 3R_14917814_SNP [dm6]	G	T	2.922e^-4	0.608	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11265951	3R_11265951_SNP [dm3] 3R_15440229_SNP [dm6]	A	T	2.923e^-4	0.608	INTRON Act88F	regulatory region REDfly_CRMs
2R	14315461	2R_14315461_SNP [dm3] 2R_18427956_SNP [dm6]	C	T	2.924e^-4	0.608	SYNONYMOUS_CODING CG12263	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5602348	3R_5602348_SNP [dm3] 3R_9776626_SNP [dm6]	C	T	2.927e^-4	0.608	SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9602125	X_9602125_SNP [dm3] X_9708092_SNP [dm6]	C	T	2.940e^-4	0.609	INTERGENIC
X	8310401	X_8310401_SNP [dm3] X_8416368_SNP [dm6]	C	T	2.945e^-4	0.609	INTRON Trf2	TF binding site BDTNP1_TFBS_dl
3L	13853091	3L_13853091_INS [dm3] 3L_13859991_INS [dm6]	A	AA	2.949e^-4	0.609	UTR_3_PRIME Hml DOWNSTREAM CG8745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13898935	3L_13898935_SNP [dm3] 3L_13905835_SNP [dm6]	T	A	2.949e^-4	0.609	INTERGENIC
3R	4997466	3R_4997466_SNP [dm3] 3R_9171744_SNP [dm6]	A	T	2.952e^-4	0.609	INTRON pum
3L	14235537	3L_14235537_SNP [dm3] 3L_14242437_SNP [dm6]	C	G	2.954e^-4	0.609	INTERGENIC
3R	4976599	3R_4976599_SNP [dm3] 3R_9150877_SNP [dm6]	A	C	2.956e^-4	0.609	INTRON pum
2R	8122220	2R_8122220_SNP [dm3] 2R_12234715_SNP [dm6]	C	T	2.957e^-4	0.609	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	7625663	3L_7625663_SNP [dm3] 3L_7632563_SNP [dm6]	A	G	2.959e^-4	0.609	UPSTREAM CG33275 INTRON CG33275
2L	5092424	2L_5092424_INS [dm3] 2L_5092424_INS [dm6]	C	AA	2.964e^-4	0.609	INTRON pgant5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	14528451	X_14528451_SNP [dm3] X_14634418_SNP [dm6]	G	C	2.967e^-4	0.609	INTRON NetA
2L	1078711	2L_1078711_SNP [dm3] 2L_1078711_SNP [dm6]	G	A	2.982e^-4	0.609	SYNONYMOUS_CODING ast UPSTREAM S	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	2925603	3L_2925603_SNP [dm3] 3L_2925603_SNP [dm6]	G	A	2.982e^-4	0.609	INTRON Shab
3L	21397373	3L_21397373_SNP [dm3] 3L_21404273_SNP [dm6]	A	C	2.984e^-4	0.609	INTRON rgn
2R	12482319	2R_12482319_SNP [dm3] 2R_16594814_SNP [dm6]	C	T	2.992e^-4	0.609	UPSTREAM CG8306 DOWNSTREAM CG8303 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	9983338	3R_9983338_SNP [dm3] 3R_14157616_SNP [dm6]	T	C	2.992e^-4	0.609	NON_SYNONYMOUS_CODING CG31327 UPSTREAM CG31533	TF binding site mE1_TFBS_chinmo
2R	15841969	2R_15841969_SNP [dm3] 2R_19954464_SNP [dm6]	G	A	2.992e^-4	0.609	UTR_3_PRIME CG44622
2L	3044620	2L_3044620_SNP [dm3] 2L_3044620_SNP [dm6]	A	C	2.994e^-4	0.609	INTRON v_2_k05816
3R	13673469	3R_13673469_SNP [dm3] 3R_17847747_SNP [dm6]	T	G	2.995e^-4	0.609	INTRON tinc
3R	10005767	3R_10005767_SNP [dm3] 3R_14180045_SNP [dm6]	C	A	3.005e^-4	0.61	INTRON Dop1R1	TF binding site mE1_TFBS_cad
3R	4952739	3R_4952739_SNP [dm3] 3R_9127017_SNP [dm6]	G	C	3.009e^-4	0.61	INTRON pum
3L	4274582	3L_4274582_SNP [dm3] 3L_4274582_SNP [dm6]	A	G	3.018e^-4	0.61	SYNONYMOUS_CODING CG1273
3R	8026722	3R_8026722_SNP [dm3] 3R_12201000_SNP [dm6]	G	A	3.026e^-4	0.61	INTERGENIC
2L	15255467	2L_15255467_SNP [dm3] 2L_15255467_SNP [dm6]	T	C	3.036e^-4	0.61	NON_SYNONYMOUS_CODING Pol32 DOWNSTREAM dao	TF binding site mE1_TFBS_HSA
2L	8384672	2L_8384672_SNP [dm3] 2L_8384672_SNP [dm6]	G	A	3.038e^-4	0.61	UTR_5_PRIME CG13384 UPSTREAM l_2_k12914 INTRON CG13384	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	7029661	3L_7029661_SNP [dm3] 3L_7036561_SNP [dm6]	A	G	3.039e^-4	0.61	INTRON Mp
2R	6813541	2R_6813541_SNP [dm3] 2R_10926036_SNP [dm6]	G	T	3.040e^-4	0.61	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8352742	2L_8352742_SNP [dm3] 2L_8352742_SNP [dm6]	G	A	3.042e^-4	0.61	INTRON Mur29B
3L	10717464	3L_10717464_SNP [dm3] 3L_10724364_SNP [dm6]	C	T	3.043e^-4	0.61	INTERGENIC
3L	8747437	3L_8747437_SNP [dm3] 3L_8754337_SNP [dm6]	G	T	3.052e^-4	0.61	START_GAINED Fhos UTR_5_PRIME Fhos
2R	5747039	2R_5747039_MNP [dm3] 2R_9859534_MNP [dm6]	CCA	AGT	3.055e^-4	0.61	INTRON CG1516	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19479586	3R_19479586_SNP [dm3] 3R_23653864_SNP [dm6]	G	A	3.057e^-4	0.61	INTRON CG31145
3R	10156944	3R_10156944_SNP [dm3] 3R_14331222_SNP [dm6]	G	C	3.065e^-4	0.61	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3054625	2L_3054625_DEL [dm3] 2L_3054625_DEL [dm6]	TTCCAT	A	3.066e^-4	0.61	SPLICE_SITE_DONOR v_2_k05816 SPLICE_SITE_REGION v_2_k05816 INTRON v_2_k05816	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11674806	3L_11674806_SNP [dm3] 3L_11681706_SNP [dm6]	T	C	3.072e^-4	0.61	UPSTREAM TfIIEalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	14769302	2L_14769302_SNP [dm3] 2L_14769302_SNP [dm6]	G	C	3.085e^-4	0.61	INTERGENIC
2L	14769345	2L_14769345_SNP [dm3] 2L_14769345_SNP [dm6]	C	G	3.085e^-4	0.61	INTERGENIC
3R	9880393	3R_9880393_SNP [dm3] 3R_14054671_SNP [dm6]	T	C	3.098e^-4	0.61	INTERGENIC
3R	10119599	3R_10119599_INS [dm3] 3R_14293877_INS [dm6]	C	CTGTTACTCTCTAC...	3.100e^-4	0.61	INTRON CG12207
3R	10119602	3R_10119602_SNP [dm3] 3R_14293880_SNP [dm6]	T	A	3.100e^-4	0.61	INTRON CG12207
X	15771898	X_15771898_SNP [dm3] X_15877865_SNP [dm6]	A	G	3.107e^-4	0.61	SYNONYMOUS_CODING tay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4074853	2L_4074853_SNP [dm3] 2L_4074853_SNP [dm6]	T	C	3.108e^-4	0.61	INTRON ed & 1 other
X	18071426	X_18071426_SNP [dm3] X_18177393_SNP [dm6]	A	G	3.111e^-4	0.61	UPSTREAM Frq2 INTERGENIC
X	9529533	X_9529533_SNP [dm3] X_9635500_SNP [dm6]	A	G	3.113e^-4	0.61	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
3L	3564725	3L_3564725_SNP [dm3] 3L_3564725_SNP [dm6]	T	G	3.116e^-4	0.61	INTRON Eip63E
3R	9690445	3R_9690445_SNP [dm3] 3R_13864723_SNP [dm6]	G	A	3.122e^-4	0.61	INTERGENIC
3R	5178162	3R_5178162_SNP [dm3] 3R_9352440_SNP [dm6]	G	A	3.123e^-4	0.61	INTRON CG45050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2L	5727398	2L_5727398_SNP [dm3] 2L_5727398_SNP [dm6]	T	G	3.126e^-4	0.61	UTR_3_PRIME CG14006 INTRON CG11030	TF binding site mE1_TFBS_cad
3L	9600729	3L_9600729_SNP [dm3] 3L_9607629_SNP [dm6]	T	A	3.136e^-4	0.61	INTRON CG3280
X	15538819	X_15538819_SNP [dm3] X_15644786_SNP [dm6]	G	C	3.142e^-4	0.61	UTR_3_PRIME CG8117	TF binding site BDTNP1_TFBS_da
2L	12490383	2L_12490383_SNP [dm3] 2L_12490383_SNP [dm6]	G	C	3.146e^-4	0.61	INTRON bun
3L	6879044	3L_6879044_SNP [dm3] 3L_6885944_SNP [dm6]	G	A	3.148e^-4	0.61	INTERGENIC
3R	7355843	3R_7355843_SNP [dm3] 3R_11530121_SNP [dm6]	G	A	3.150e^-4	0.61	INTERGENIC
3R	13874280	3R_13874280_INS [dm3] 3R_18048558_INS [dm6]	A	ATCG	3.155e^-4	0.61	UTR_5_PRIME htl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	380540	2L_380540_SNP [dm3] 2L_380540_SNP [dm6]	T	A	3.159e^-4	0.61	INTRON al	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	9729061	3R_9729061_SNP [dm3] 3R_13903339_SNP [dm6]	T	A	3.163e^-4	0.61	INTRON ems	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	16817628	3L_16817628_SNP [dm3] 3L_16824528_SNP [dm6]	T	A	3.168e^-4	0.61	INTRON CG13024
3L	6893984	3L_6893984_SNP [dm3] 3L_6900884_SNP [dm6]	C	A	3.176e^-4	0.61	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	10348186	2R_10348186_SNP [dm3] 2R_14460681_SNP [dm6]	G	T	3.176e^-4	0.61	INTRON Oaz	TF binding site mE1_TFBS_cad
2R	1135582	2R_1135582_SNP [dm3] 2R_5248077_SNP [dm6]	C	T	3.181e^-4	0.61	INTRON Nipped-A	transposable element FlyBase
X	6535226	X_6535226_SNP [dm3] X_6641193_SNP [dm6]	G	A	3.184e^-4	0.61	INTRON pigs
3L	4301853	3L_4301853_SNP [dm3] 3L_4301853_SNP [dm6]	G	A	3.188e^-4	0.61	INTRON dyl
3R	8364449	3R_8364449_SNP [dm3] 3R_12538727_SNP [dm6]	C	T	3.190e^-4	0.61	INTRON Octbeta3R
3R	4954263	3R_4954263_SNP [dm3] 3R_9128541_SNP [dm6]	A	T	3.191e^-4	0.61	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14777463	3R_14777463_SNP [dm3] 3R_18951741_SNP [dm6]	A	C	3.191e^-4	0.61	INTRON CG42613 & 1 other
3L	18216201	3L_18216201_SNP [dm3] 3L_18223101_SNP [dm6]	G	A	3.192e^-4	0.61	INTERGENIC
3L	9720156	3L_9720156_SNP [dm3] 3L_9727056_SNP [dm6]	T	C	3.194e^-4	0.61	UTR_5_PRIME Naa60 DOWNSTREAM defl	TF binding site mE1_TFBS_HSA
2R	10831201	2R_10831201_SNP [dm3] 2R_14943696_SNP [dm6]	C	T	3.195e^-4	0.61	DOWNSTREAM aPKC INTRON CG10257
2R	11612173	2R_11612173_SNP [dm3] 2R_15724668_SNP [dm6]	C	A	3.196e^-4	0.61	INTERGENIC
3R	13429289	3R_13429289_SNP [dm3] 3R_17603567_SNP [dm6]	T	A	3.198e^-4	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15403375	2L_15403375_SNP [dm3] 2L_15403375_SNP [dm6]	A	G	3.198e^-4	0.61	INTERGENIC
2R	5343046	2R_5343046_SNP [dm3] 2R_9455541_SNP [dm6]	T	A	3.200e^-4	0.61	UPSTREAM CG33757 INTRON Camta
X	8294200	X_8294200_SNP [dm3] X_8400167_SNP [dm6]	G	A	3.204e^-4	0.61	SYNONYMOUS_CODING CG10555	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6729594	X_6729594_SNP [dm3] X_6835561_SNP [dm6]	A	G	3.205e^-4	0.61	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7901800	3L_7901800_DEL [dm3] 3L_7908700_DEL [dm6]	GTC	G	3.208e^-4	0.61	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13429141	3R_13429141_DEL [dm3] 3R_17603419_DEL [dm6]	ATCGAAAA	A	3.209e^-4	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26255118	3R_26255118_SNP [dm3] 3R_30429396_SNP [dm6]	C	T	3.212e^-4	0.61	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4070736	X_4070736_SNP [dm3] X_4176703_SNP [dm6]	G	C	3.213e^-4	0.61	INTRON Fas2
X	11566231	X_11566231_SNP [dm3] X_11672198_SNP [dm6]	G	C	3.215e^-4	0.61	INTRON Ptp10D	TF binding site mE1_TFBS_cad
3L	10845389	3L_10845389_SNP [dm3] 3L_10852289_SNP [dm6]	A	T	3.216e^-4	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9932875	3L_9932875_SNP [dm3] 3L_9939775_SNP [dm6]	C	G	3.219e^-4	0.61	INTRON CG34356
2L	13079472	2L_13079472_SNP [dm3] 2L_13079472_SNP [dm6]	T	C	3.220e^-4	0.61	INTERGENIC
3L	7459671	3L_7459671_SNP [dm3] 3L_7466571_SNP [dm6]	T	G	3.221e^-4	0.61	SPLICE_SITE_REGION Tsp66A & 2 others UPSTREAM Tsp66A INTRON Tsp66A & 2 others
2R	5803394	2R_5803394_SNP [dm3] 2R_9915889_SNP [dm6]	T	A	3.222e^-4	0.61	UTR_3_PRIME Mef2 DOWNSTREAM Mef2
3R	11436224	3R_11436224_SNP [dm3] 3R_15610502_SNP [dm6]	A	C	3.225e^-4	0.61	INTERGENIC
2L	492977	2L_492977_SNP [dm3] 2L_492977_SNP [dm6]	T	A	3.227e^-4	0.61	INTRON ush
3L	18230238	3L_18230238_SNP [dm3] 3L_18237138_SNP [dm6]	A	T	3.236e^-4	0.61	INTERGENIC
2L	8285916	2L_8285916_SNP [dm3] 2L_8285916_SNP [dm6]	C	T	3.241e^-4	0.61	INTRON Btk29A
2R	18856184	2R_18856184_SNP [dm3] 2R_22968661_SNP [dm6]	A	G	3.245e^-4	0.61	INTERGENIC
3L	6880634	3L_6880634_SNP [dm3] 3L_6887534_SNP [dm6]	T	C	3.247e^-4	0.61	INTERGENIC
3R	13431542	3R_13431542_SNP [dm3] 3R_17605820_SNP [dm6]	G	A	3.254e^-4	0.61	UPSTREAM sll INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	19134917	2R_19134917_SNP [dm3] 2R_23247394_SNP [dm6]	A	T	3.259e^-4	0.61	SYNONYMOUS_CODING RpL22-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21197497	X_21197497_SNP [dm3] X_21326470_SNP [dm6]	T	C	3.266e^-4	0.61	SYNONYMOUS_CODING CG1486
3L	13915470	3L_13915470_SNP [dm3] 3L_13922370_SNP [dm6]	C	G	3.266e^-4	0.61	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	8353659	3R_8353659_SNP [dm3] 3R_12527937_SNP [dm6]	C	A	3.267e^-4	0.61	NON_SYNONYMOUS_CODING Hug INTRON Octbeta3R
2R	5750236	2R_5750236_SNP [dm3] 2R_9862731_SNP [dm6]	C	A	3.272e^-4	0.61	UPSTREAM CG30010 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5705236	2L_5705236_SNP [dm3] 2L_5705236_SNP [dm6]	T	A	3.275e^-4	0.61	INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

Cuticul_8_12_C28_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results