DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.998e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02042

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.7447	0.0343
In_3R_K	4.6426	0.0981

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1972 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	4.419e^-8	0.083	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
2R	12788320	2R_12788320_SNP [dm3] 2R_16900815_SNP [dm6]	A	C	3.078e^-7	0.206	INTRON inaC
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	3.301e^-7	0.206	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8216558	3R_8216558_SNP [dm3] 3R_12390836_SNP [dm6]	C	T	6.752e^-7	0.242	UTR_3_PRIME CG10096 & 1 other INTRON CG34402
3R	8286537	3R_8286537_SNP [dm3] 3R_12460815_SNP [dm6]	C	T	7.411e^-7	0.242	UPSTREAM CG5961 INTRON CG12267	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	7.733e^-7	0.242	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	8235993	3R_8235993_SNP [dm3] 3R_12410271_SNP [dm6]	T	G	2.204e^-6	0.59	SPLICE_SITE_REGION CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	24599566	3R_24599566_INS [dm3] 3R_28773844_INS [dm6]	T	TT	2.893e^-6	0.614	INTERGENIC
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	2.948e^-6	0.614	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	8164413	3R_8164413_SNP [dm3] 3R_12338691_SNP [dm6]	A	C	4.300e^-6	0.683	INTRON CR44941
3R	14335563	3R_14335563_SNP [dm3] 3R_18509841_SNP [dm6]	T	C	4.483e^-6	0.683	INTRON fru
2R	10711850	2R_10711850_DEL [dm3] 2R_14824345_DEL [dm6]	AA	A	4.729e^-6	0.683	EXON CR45329
2L	12226657	2L_12226657_SNP [dm3] 2L_12226657_SNP [dm6]	G	A	5.480e^-6	0.683	INTRON aret
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	5.812e^-6	0.683	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
2R	10620774	2R_10620774_SNP [dm3] 2R_14733269_SNP [dm6]	C	T	5.904e^-6	0.683	INTERGENIC
X	4300225	X_4300225_SNP [dm3] X_4406192_SNP [dm6]	T	C	6.393e^-6	0.683	INTRON CR32773	TF binding site mE1_TFBS_chinmo
3R	8234936	3R_8234936_SNP [dm3] 3R_12409214_SNP [dm6]	A	G	6.688e^-6	0.683	UTR_5_PRIME CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8286850	3R_8286850_SNP [dm3] 3R_12461128_SNP [dm6]	G	A	6.851e^-6	0.683	SYNONYMOUS_CODING CG12267 UPSTREAM CG5961	TF binding site mE1_TFBS_inv
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	6.914e^-6	0.683	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
X	19003743	X_19003743_SNP [dm3] X_19109710_SNP [dm6]	G	T	7.352e^-6	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12518599	X_12518599_DEL [dm3] X_12624566_DEL [dm6]	TG	T	8.707e^-6	0.778	INTRON CG15728
3R	21009368	3R_21009368_SNP [dm3] 3R_25183646_SNP [dm6]	T	A	1.135e^-5	0.811	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	12023626	3L_12023626_SNP [dm3] 3L_12030526_SNP [dm6]	T	C	1.136e^-5	0.811	INTRON rols	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23000704	3R_23000704_DEL [dm3] 3R_27174982_DEL [dm6]	ATGAACCCCAGTTCA...	A	1.149e^-5	0.811	INTRON Ser	TF binding site mE1_TFBS_cad
2R	13005186	2R_13005186_SNP [dm3] 2R_17117681_SNP [dm6]	T	C	1.177e^-5	0.811	DOWNSTREAM Amy-p INTERGENIC
2L	12226662	2L_12226662_INS [dm3] 2L_12226662_INS [dm6]	G	AA	1.252e^-5	0.811	INTRON aret
3R	8234140	3R_8234140_SNP [dm3] 3R_12408418_SNP [dm6]	C	G	1.318e^-5	0.811	NON_SYNONYMOUS_CODING CG5196 UPSTREAM CG5196 DOWNSTREAM CG5167	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	8341839	3R_8341839_DEL [dm3] 3R_12516117_DEL [dm6]	AGGAACTTAAATACACAATT...	A	1.343e^-5	0.811	INTRON Octbeta3R
3R	14647605	3R_14647605_SNP [dm3] 3R_18821883_SNP [dm6]	G	C	1.421e^-5	0.811	INTRON CG18208
2L	15051741	2L_15051741_SNP [dm3] 2L_15051741_SNP [dm6]	C	A	1.436e^-5	0.811	INTRON ck	regulatory region REDfly_CRMs
3L	2273734	3L_2273734_SNP [dm3] 3L_2273734_SNP [dm6]	T	C	1.488e^-5	0.811	UPSTREAM tRNA:CR32303 & 1 other INTERGENIC
2L	9844088	2L_9844088_SNP [dm3] 2L_9844088_SNP [dm6]	C	G	1.511e^-5	0.811	INTRON nAChRalpha6
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	1.525e^-5	0.811	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	19122571	2R_19122571_SNP [dm3] 2R_23235048_SNP [dm6]	T	C	1.551e^-5	0.811	INTERGENIC
3R	8224915	3R_8224915_SNP [dm3] 3R_12399193_SNP [dm6]	A	T	1.584e^-5	0.811	SYNONYMOUS_CODING lig3 UPSTREAM Cyp9f3Psi INTRON CG34402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2219719	3R_2219719_SNP [dm3] 3R_6393997_SNP [dm6]	G	C	1.586e^-5	0.811	INTRON Dmtn
3L	12893217	3L_12893217_SNP [dm3] 3L_12900117_SNP [dm6]	A	T	1.640e^-5	0.811	INTERGENIC
3L	6064536	3L_6064536_SNP [dm3] 3L_6071436_SNP [dm6]	T	G	1.687e^-5	0.811	UTR_3_PRIME CG42269 UPSTREAM CG6602	TF binding site mE1_TFBS_bab1
3R	16863695	3R_16863695_SNP [dm3] 3R_21037973_SNP [dm6]	G	A	1.711e^-5	0.811	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6986972	2R_6986972_SNP [dm3] 2R_11099467_SNP [dm6]	A	G	1.764e^-5	0.811	INTRON luna
3R	15636850	3R_15636850_SNP [dm3] 3R_19811128_SNP [dm6]	A	G	1.809e^-5	0.811	INTRON bnl
3L	16551859	3L_16551859_SNP [dm3] 3L_16558759_SNP [dm6]	C	T	1.839e^-5	0.811	DOWNSTREAM CG4229 INTERGENIC
3L	4104457	3L_4104457_SNP [dm3] 3L_4104457_SNP [dm6]	G	A	1.914e^-5	0.811	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	10625290	X_10625290_DEL [dm3] X_10731257_DEL [dm6]	AAA	G	1.946e^-5	0.811	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1444499	3L_1444499_SNP [dm3] 3L_1444499_SNP [dm6]	T	G	2.005e^-5	0.811	INTRON Ptp61F
2R	9664326	2R_9664326_SNP [dm3] 2R_13776821_SNP [dm6]	C	T	2.069e^-5	0.811	INTRON Cpr50Ca
3R	19214550	3R_19214550_SNP [dm3] 3R_23388828_SNP [dm6]	A	G	2.086e^-5	0.811	NON_SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	2139791	3R_2139791_SNP [dm3] 3R_6314069_SNP [dm6]	C	T	2.113e^-5	0.811	INTRON Osi17
X	10809680	X_10809680_SNP [dm3] X_10915647_SNP [dm6]	C	T	2.260e^-5	0.811	NON_SYNONYMOUS_CODING CG43901 INTRON CG43901	TF binding site mE1_TFBS_chinmo
2R	12777826	2R_12777826_SNP [dm3] 2R_16890321_SNP [dm6]	G	C	2.317e^-5	0.811	INTRON CG8910
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	2.320e^-5	0.811	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8280116	3R_8280116_SNP [dm3] 3R_12454394_SNP [dm6]	A	C	2.339e^-5	0.811	INTRON CG18549	TF binding site BDTNP1_TFBS_prd
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	2.342e^-5	0.811	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18132685	3R_18132685_SNP [dm3] 3R_22306963_SNP [dm6]	G	A	2.363e^-5	0.811	INTERGENIC
3R	25607206	3R_25607206_SNP [dm3] 3R_29781484_SNP [dm6]	G	C	2.381e^-5	0.811	INTRON kay
3L	6395533	3L_6395533_SNP [dm3] 3L_6402433_SNP [dm6]	G	A	2.420e^-5	0.811	INTRON CG42747
2R	4672313	2R_4672313_SNP [dm3] 2R_8784808_SNP [dm6]	C	A	2.568e^-5	0.832	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8936200	2R_8936200_SNP [dm3] 2R_13048695_SNP [dm6]	C	T	2.574e^-5	0.832	DOWNSTREAM CG13324 INTERGENIC
2L	10102955	2L_10102955_SNP [dm3] 2L_10102955_SNP [dm6]	C	T	2.662e^-5	0.843	INTRON CG44153 & 1 other
3R	2140173	3R_2140173_SNP [dm3] 3R_6314451_SNP [dm6]	A	G	2.695e^-5	0.843	UPSTREAM Osi17 INTRON Osi17
3R	8253437	3R_8253437_SNP [dm3] 3R_12427715_SNP [dm6]	C	T	2.924e^-5	0.852	NON_SYNONYMOUS_CODING Sas DOWNSTREAM CG5641	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6107318	3L_6107318_SNP [dm3] 3L_6114218_SNP [dm6]	C	G	2.967e^-5	0.852	INTRON Ets65A
2R	13713600	2R_13713600_SNP [dm3] 2R_17826095_SNP [dm6]	A	G	3.012e^-5	0.852	INTRON grh	transposable element FlyBase
3R	8234276	3R_8234276_SNP [dm3] 3R_12408554_SNP [dm6]	C	G	3.034e^-5	0.852	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	735620	3L_735620_SNP [dm3] 3L_735620_SNP [dm6]	G	T	3.065e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	4858700	3R_4858700_SNP [dm3] 3R_9032978_SNP [dm6]	C	T	3.137e^-5	0.852	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8239628	3R_8239628_SNP [dm3] 3R_12413906_SNP [dm6]	A	C	3.172e^-5	0.852	UTR_5_PRIME pps UPSTREAM snmRNA:649 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk
X	7619008	X_7619008_SNP [dm3] X_7724975_SNP [dm6]	T	C	3.177e^-5	0.852	SYNONYMOUS_CODING Hira
2L	6538674	2L_6538674_SNP [dm3] 2L_6538674_SNP [dm6]	T	G	3.201e^-5	0.852	INTRON eya
3R	25607204	3R_25607204_SNP [dm3] 3R_29781482_SNP [dm6]	T	A	3.233e^-5	0.852	INTRON kay
3R	17912729	3R_17912729_SNP [dm3] 3R_22087007_SNP [dm6]	G	A	3.313e^-5	0.852	UPSTREAM CG5791 & 1 other INTRON CG5778
3R	8338130	3R_8338130_SNP [dm3] 3R_12512408_SNP [dm6]	G	C	3.324e^-5	0.852	UTR_3_PRIME Octbeta3R DOWNSTREAM Hsp70Bc	TF binding site mE1_TFBS_cad
3R	2776414	3R_2776414_SNP [dm3] 3R_6950692_SNP [dm6]	G	A	3.377e^-5	0.852	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9666689	2R_9666689_SNP [dm3] 2R_13779184_SNP [dm6]	A	G	3.421e^-5	0.852	SYNONYMOUS_CODING S-Lap7 INTRON Cpr50Ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25818024	3R_25818024_SNP [dm3] 3R_29992302_SNP [dm6]	A	G	3.485e^-5	0.852	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16163701	2L_16163701_DEL [dm3] 2L_16163701_DEL [dm6]	TGTCTGCGCGGTCA...	G	3.519e^-5	0.852	INTERGENIC
2R	6987986	2R_6987986_SNP [dm3] 2R_11100481_SNP [dm6]	T	A	3.594e^-5	0.852	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4463463	3R_4463463_SNP [dm3] 3R_8637741_SNP [dm6]	G	A	3.676e^-5	0.852	INTERGENIC
3R	8280154	3R_8280154_SNP [dm3] 3R_12454432_SNP [dm6]	G	A	3.772e^-5	0.852	INTRON CG18549	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
X	11816530	X_11816530_DEL [dm3] X_11922497_DEL [dm6]	AATC	A	3.923e^-5	0.852	INTRON Sclp
X	19106663	X_19106663_SNP [dm3] X_19212630_SNP [dm6]	C	A	4.004e^-5	0.852	UPSTREAM CG14195 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	26087341	3R_26087341_SNP [dm3] 3R_30261619_SNP [dm6]	A	T	4.049e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	8264461	3R_8264461_SNP [dm3] 3R_12438739_SNP [dm6]	G	A	4.102e^-5	0.852	NON_SYNONYMOUS_CODING CG17207 UPSTREAM Desat1 DOWNSTREAM Desat2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	18120031	3L_18120031_SNP [dm3] 3L_18126931_SNP [dm6]	G	A	4.102e^-5	0.852	INTERGENIC
3L	14514049	3L_14514049_SNP [dm3] 3L_14520949_SNP [dm6]	T	C	4.128e^-5	0.852	INTRON bbg & 1 other
X	14453863	X_14453863_SNP [dm3] X_14559830_SNP [dm6]	G	A	4.161e^-5	0.852	INTERGENIC
3L	8078005	3L_8078005_SNP [dm3] 3L_8084905_SNP [dm6]	T	C	4.174e^-5	0.852	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
X	9806539	X_9806539_SNP [dm3] X_9912506_SNP [dm6]	C	A	4.216e^-5	0.852	INTERGENIC
3L	5510321	3L_5510321_INS [dm3] 3L_5517221_INS [dm6]	T	TT	4.305e^-5	0.852	INTRON Lkr
3R	8350023	3R_8350023_SNP [dm3] 3R_12524301_SNP [dm6]	C	A	4.327e^-5	0.852	INTRON Octbeta3R
2R	6988000	2R_6988000_SNP [dm3] 2R_11100495_SNP [dm6]	G	A	4.398e^-5	0.852	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10002930	3L_10002930_SNP [dm3] 3L_10009830_SNP [dm6]	T	C	4.416e^-5	0.852	INTRON dpr6	TF binding site BDTNP1_TFBS_twi
2R	18260119	2R_18260119_SNP [dm3] 2R_22372614_SNP [dm6]	T	C	4.459e^-5	0.852	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	19107554	2R_19107554_SNP [dm3] 2R_23220031_SNP [dm6]	G	A	4.495e^-5	0.852	INTERGENIC
3R	24514206	3R_24514206_SNP [dm3] 3R_28688484_SNP [dm6]	G	T	4.501e^-5	0.852	INTRON CG9990
X	11816240	X_11816240_DEL [dm3] X_11922207_DEL [dm6]	TGTAT	T	4.588e^-5	0.852	INTRON Sclp
2R	18260478	2R_18260478_SNP [dm3] 2R_22372973_SNP [dm6]	C	T	4.652e^-5	0.852	UTR_5_PRIME Liprin-gamma DOWNSTREAM CR44759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	8164613	3R_8164613_SNP [dm3] 3R_12338891_SNP [dm6]	T	A	4.668e^-5	0.852	EXON CR44941
3L	19966820	3L_19966820_SNP [dm3] 3L_19973720_SNP [dm6]	C	T	4.913e^-5	0.852	SYNONYMOUS_CODING Ac76E
2R	10098532	2R_10098532_DEL [dm3] 2R_14211027_DEL [dm6]	TTTGTATCT	T	4.932e^-5	0.852	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9664253	2R_9664253_SNP [dm3] 2R_13776748_SNP [dm6]	T	A	4.946e^-5	0.852	INTRON Cpr50Ca
3R	25821908	3R_25821908_SNP [dm3] 3R_29996186_SNP [dm6]	T	A	4.994e^-5	0.852	NON_SYNONYMOUS_CODING Sas-6 UPSTREAM CG7903 DOWNSTREAM CG15525	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19109378	3R_19109378_SNP [dm3] 3R_23283656_SNP [dm6]	C	T	5.008e^-5	0.852	SYNONYMOUS_CODING Cdc16 UPSTREAM CG6763
X	7883552	X_7883552_SNP [dm3] X_7989519_SNP [dm6]	T	C	5.025e^-5	0.852	INTERGENIC
3R	14960664	3R_14960664_SNP [dm3] 3R_19134942_SNP [dm6]	C	T	5.108e^-5	0.852	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3R	8236387	3R_8236387_SNP [dm3] 3R_12410665_SNP [dm6]	G	A	5.124e^-5	0.852	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8231349	3R_8231349_SNP [dm3] 3R_12405627_SNP [dm6]	T	C	5.149e^-5	0.852	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8151848	3R_8151848_SNP [dm3] 3R_12326126_SNP [dm6]	T	G	5.245e^-5	0.852	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	12893221	3L_12893221_SNP [dm3] 3L_12900121_SNP [dm6]	T	C	5.367e^-5	0.852	INTERGENIC
2L	3395883	2L_3395883_SNP [dm3] 2L_3395883_SNP [dm6]	T	C	5.395e^-5	0.852	INTERGENIC
3R	8151852	3R_8151852_SNP [dm3] 3R_12326130_SNP [dm6]	C	G	5.417e^-5	0.852	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	2278086	3L_2278086_SNP [dm3] 3L_2278086_SNP [dm6]	T	G	5.429e^-5	0.852	DOWNSTREAM yellow-g2 INTERGENIC
X	15430863	X_15430863_SNP [dm3] X_15536830_SNP [dm6]	C	T	5.436e^-5	0.852	INTRON Ac13E
3R	3550136	3R_3550136_SNP [dm3] 3R_7724414_SNP [dm6]	T	A	5.495e^-5	0.852	UTR_3_PRIME CG2616	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6490417	3L_6490417_SNP [dm3] 3L_6497317_SNP [dm6]	T	C	5.523e^-5	0.852	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
X	8679939	X_8679939_SNP [dm3] X_8785906_SNP [dm6]	C	A	5.635e^-5	0.852	UPSTREAM Lim1 INTRON Lim1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	4040573	3R_4040573_SNP [dm3] 3R_8214851_SNP [dm6]	A	T	5.637e^-5	0.852	INTERGENIC
X	19091984	X_19091984_SNP [dm3] X_19197951_SNP [dm6]	G	T	5.677e^-5	0.852	UTR_3_PRIME CG7990
3R	5042790	3R_5042790_SNP [dm3] 3R_9217068_SNP [dm6]	A	G	5.678e^-5	0.852	INTRON pum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16861822	3R_16861822_SNP [dm3] 3R_21036100_SNP [dm6]	C	G	5.692e^-5	0.852	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12561460	3L_12561460_SNP [dm3] 3L_12568360_SNP [dm6]	C	A	5.706e^-5	0.852	INTRON sowah
X	11816548	X_11816548_SNP [dm3] X_11922515_SNP [dm6]	T	A	5.742e^-5	0.852	INTRON Sclp
2L	3402841	2L_3402841_DEL [dm3] 2L_3402841_DEL [dm6]	TGGGTAAAACGGT...	T	5.824e^-5	0.852	INTERGENIC
2R	18261619	2R_18261619_SNP [dm3] 2R_22374114_SNP [dm6]	T	A	5.889e^-5	0.852	UPSTREAM Rtf1 INTRON CR44759	TF binding site BDTNP1_TFBS_dl
3R	1795589	3R_1795589_SNP [dm3] 3R_5969867_SNP [dm6]	G	A	5.929e^-5	0.852	UPSTREAM CR44926 INTERGENIC
X	19106692	X_19106692_SNP [dm3] X_19212659_SNP [dm6]	T	G	5.933e^-5	0.852	UPSTREAM CG14195 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	15190922	3L_15190922_SNP [dm3] 3L_15197822_SNP [dm6]	G	A	5.957e^-5	0.852	INTERGENIC
X	15431207	X_15431207_SNP [dm3] X_15537174_SNP [dm6]	G	T	6.062e^-5	0.852	INTRON Ac13E
3R	8349986	3R_8349986_SNP [dm3] 3R_12524264_SNP [dm6]	T	C	6.067e^-5	0.852	INTRON Octbeta3R
2R	13001518	2R_13001518_SNP [dm3] 2R_17114013_SNP [dm6]	A	G	6.134e^-5	0.852	SYNONYMOUS_CODING CG15611	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8289146	3R_8289146_SNP [dm3] 3R_12463424_SNP [dm6]	C	A	6.138e^-5	0.852	NON_SYNONYMOUS_CODING CG5608	TF binding site mE1_TFBS_inv
3R	2182521	3R_2182521_SNP [dm3] 3R_6356799_SNP [dm6]	A	G	6.161e^-5	0.852	SYNONYMOUS_CODING Pak
3L	6012222	3L_6012222_SNP [dm3] 3L_6019122_SNP [dm6]	T	G	6.181e^-5	0.852	START_GAINED PVRAP UTR_5_PRIME PVRAP
3R	15636904	3R_15636904_SNP [dm3] 3R_19811182_SNP [dm6]	G	A	6.233e^-5	0.852	INTRON bnl
3L	2278080	3L_2278080_SNP [dm3] 3L_2278080_SNP [dm6]	G	C	6.460e^-5	0.852	DOWNSTREAM yellow-g2 INTERGENIC
X	2757730	X_2757730_SNP [dm3] X_2863697_SNP [dm6]	T	A	6.460e^-5	0.852	INTRON kirre
3R	21990038	3R_21990038_SNP [dm3] 3R_26164316_SNP [dm6]	T	C	6.470e^-5	0.852	INTERGENIC
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	6.515e^-5	0.852	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
X	14455777	X_14455777_SNP [dm3] X_14561744_SNP [dm6]	A	G	6.550e^-5	0.852	INTERGENIC
2L	18815170	2L_18815170_SNP [dm3] 2L_18815170_SNP [dm6]	C	G	6.592e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3395959	2L_3395959_SNP [dm3] 2L_3395959_SNP [dm6]	G	A	6.660e^-5	0.852	INTERGENIC
2R	19122570	2R_19122570_SNP [dm3] 2R_23235047_SNP [dm6]	T	C	6.687e^-5	0.852	INTERGENIC
3R	9914330	3R_9914330_SNP [dm3] 3R_14088608_SNP [dm6]	A	G	6.735e^-5	0.852	UPSTREAM Npc2b DOWNSTREAM foxo INTERGENIC	TF binding site mE1_TFBS_bab1
3R	23493101	3R_23493101_SNP [dm3] 3R_27667379_SNP [dm6]	C	G	6.795e^-5	0.852	SYNONYMOUS_CODING unc80
3R	17682853	3R_17682853_SNP [dm3] 3R_21857131_SNP [dm6]	A	G	6.840e^-5	0.852	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	18132668	3R_18132668_SNP [dm3] 3R_22306946_SNP [dm6]	G	A	6.983e^-5	0.852	INTERGENIC
2R	12701309	2R_12701309_SNP [dm3] 2R_16813804_SNP [dm6]	G	A	7.036e^-5	0.852	DOWNSTREAM CR44380 INTERGENIC
2R	2594268	2R_2594268_INS [dm3] 2R_6706763_INS [dm6]	A	AGTATTA	7.039e^-5	0.852	UPSTREAM CR43611 DOWNSTREAM mir-4975 INTRON CG3409 & 1 other
3L	5510032	3L_5510032_SNP [dm3] 3L_5516932_SNP [dm6]	T	G	7.072e^-5	0.852	INTRON Lkr
3R	8219408	3R_8219408_SNP [dm3] 3R_12393686_SNP [dm6]	G	A	7.164e^-5	0.852	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402
3L	12023795	3L_12023795_SNP [dm3] 3L_12030695_SNP [dm6]	A	T	7.172e^-5	0.852	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8234000	3R_8234000_SNP [dm3] 3R_12408278_SNP [dm6]	A	G	7.277e^-5	0.852	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
X	11150989	X_11150989_SNP [dm3] X_11256956_SNP [dm6]	T	C	7.360e^-5	0.852	INTRON CG44422
3L	2278285	3L_2278285_SNP [dm3] 3L_2278285_SNP [dm6]	C	A	7.383e^-5	0.852	DOWNSTREAM yellow-g2 INTERGENIC	TF binding site mE1_TFBS_inv
3L	12870751	3L_12870751_SNP [dm3] 3L_12877651_SNP [dm6]	C	T	7.394e^-5	0.852	INTERGENIC
3R	10375300	3R_10375300_SNP [dm3] 3R_14549578_SNP [dm6]	T	A	7.400e^-5	0.852	INTRON Pde6
3R	8349787	3R_8349787_SNP [dm3] 3R_12524065_SNP [dm6]	C	A	7.420e^-5	0.852	INTRON Octbeta3R
3L	21032478	3L_21032478_SNP [dm3] 3L_21039378_SNP [dm6]	C	T	7.433e^-5	0.852	INTRON siz
3R	8151847	3R_8151847_SNP [dm3] 3R_12326125_SNP [dm6]	C	T	7.462e^-5	0.852	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	11555039	X_11555039_SNP [dm3] X_11661006_SNP [dm6]	C	G	7.476e^-5	0.852	INTRON Ptp10D
X	9476418	X_9476418_SNP [dm3] X_9582385_SNP [dm6]	C	G	7.504e^-5	0.852	UPSTREAM CR45540 INTERGENIC
3R	24824142	3R_24824142_SNP [dm3] 3R_28998420_SNP [dm6]	A	G	7.583e^-5	0.852	INTRON wat
3R	8215726	3R_8215726_SNP [dm3] 3R_12390004_SNP [dm6]	T	C	7.590e^-5	0.852	SYNONYMOUS_CODING CG34402 DOWNSTREAM CG10096 & 1 other
2R	14434238	2R_14434238_INS [dm3] 2R_18546733_INS [dm6]	A	ACTTTTAT	7.613e^-5	0.852	INTRON Rgk2
2L	5494847	2L_5494847_SNP [dm3] 2L_5494847_SNP [dm6]	C	A	7.653e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13344924	2R_13344924_SNP [dm3] 2R_17457419_SNP [dm6]	G	C	7.725e^-5	0.852	UPSTREAM robls54B & 1 other DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
3R	13916724	3R_13916724_SNP [dm3] 3R_18091002_SNP [dm6]	C	A	7.832e^-5	0.852	UTR_5_PRIME sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13252060	3L_13252060_SNP [dm3] 3L_13258960_SNP [dm6]	G	A	7.858e^-5	0.852	INTRON caps
3R	27405881	3R_27405881_INS [dm3] 3R_31580159_INS [dm6]	T	TGATCCTTGA	7.868e^-5	0.852	UTR_5_PRIME pygo UPSTREAM rod	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	7.873e^-5	0.852	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	27414636	3R_27414636_SNP [dm3] 3R_31588914_SNP [dm6]	T	G	7.908e^-5	0.852	SPLICE_SITE_REGION CG1635 DOWNSTREAM rod INTRON CR45190 & 1 other
2R	19167173	2R_19167173_SNP [dm3] 2R_23279650_SNP [dm6]	T	C	7.908e^-5	0.852	INTERGENIC
3R	25818009	3R_25818009_SNP [dm3] 3R_29992287_SNP [dm6]	G	T	7.956e^-5	0.852	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10732187	2R_10732187_SNP [dm3] 2R_14844682_SNP [dm6]	T	A	7.966e^-5	0.852	INTRON NaPi-T	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23620849	3R_23620849_SNP [dm3] 3R_27795127_SNP [dm6]	G	A	7.993e^-5	0.852	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13873045	X_13873045_SNP [dm3] X_13979012_SNP [dm6]	T	C	8.006e^-5	0.852	INTRON mamo
2R	13350610	2R_13350610_SNP [dm3] 2R_17463105_SNP [dm6]	A	G	8.087e^-5	0.852	SYNONYMOUS_CODING CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	13855690	X_13855690_SNP [dm3] X_13961657_SNP [dm6]	T	A	8.131e^-5	0.852	INTRON mamo
X	2798728	X_2798728_SNP [dm3] X_2904695_SNP [dm6]	T	G	8.131e^-5	0.852	INTRON kirre
X	9476185	X_9476185_SNP [dm3] X_9582152_SNP [dm6]	G	A	8.228e^-5	0.857	UPSTREAM CR45540 INTERGENIC
3R	12566371	3R_12566371_SNP [dm3] 3R_16740649_SNP [dm6]	A	G	8.314e^-5	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
2R	18932255	2R_18932255_SNP [dm3] 2R_23044732_SNP [dm6]	C	A	8.336e^-5	0.857	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	10183644	3R_10183644_SNP [dm3] 3R_14357922_SNP [dm6]	C	T	8.411e^-5	0.857	DOWNSTREAM CG31320 INTRON NK7.1
3R	8342670	3R_8342670_DEL [dm3] 3R_12516948_DEL [dm6]	CCGACTGCGC	C	8.486e^-5	0.857	CODON_DELETION Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8234219	3R_8234219_SNP [dm3] 3R_12408497_SNP [dm6]	A	T	8.500e^-5	0.857	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	7267790	2R_7267790_SNP [dm3] 2R_11380285_SNP [dm6]	T	C	8.545e^-5	0.857	DOWNSTREAM Sod3 INTERGENIC
3R	24824152	3R_24824152_SNP [dm3] 3R_28998430_SNP [dm6]	G	C	8.545e^-5	0.857	INTRON wat
3L	19967126	3L_19967126_DEL [dm3] 3L_19974026_DEL [dm6]	TATCTAATGTTGAA...	T	8.778e^-5	0.876	INTRON Ac76E
3L	14514091	3L_14514091_SNP [dm3] 3L_14520991_SNP [dm6]	T	C	8.826e^-5	0.876	INTRON bbg & 1 other
2L	12034576	2L_12034576_SNP [dm3] 2L_12034576_SNP [dm6]	C	T	8.901e^-5	0.878	SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut	TF binding site mE1_TFBS_chinmo
2R	13344923	2R_13344923_SNP [dm3] 2R_17457418_SNP [dm6]	A	C	8.992e^-5	0.878	UPSTREAM robls54B & 1 other DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
3R	23000258	3R_23000258_DEL [dm3] 3R_27174536_DEL [dm6]	AT	A	9.071e^-5	0.878	INTRON Ser	TF binding site mE1_TFBS_cad
3L	6396124	3L_6396124_SNP [dm3] 3L_6403024_SNP [dm6]	A	G	9.100e^-5	0.878	INTRON CG42747
X	3006822	X_3006822_SNP [dm3] X_3112789_SNP [dm6]	C	T	9.267e^-5	0.878	INTRON kirre
3R	20068459	3R_20068459_SNP [dm3] 3R_24242737_SNP [dm6]	C	T	9.272e^-5	0.878	SYNONYMOUS_CODING mask	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4878527	X_4878527_SNP [dm3] X_4984494_SNP [dm6]	G	A	9.295e^-5	0.878	INTRON CR44833	regulatory region REDfly_CRMs
X	12451652	X_12451652_SNP [dm3] X_12557619_SNP [dm6]	A	T	9.321e^-5	0.878	INTRON CG43921
3R	10180989	3R_10180989_DEL [dm3] 3R_14355267_DEL [dm6]	GTGGGGGAG	G	9.337e^-5	0.878	INTRON NK7.1
3R	10122461	3R_10122461_SNP [dm3] 3R_14296739_SNP [dm6]	A	G	9.340e^-5	0.878	INTRON CG12207
3L	13500684	3L_13500684_SNP [dm3] 3L_13507584_SNP [dm6]	T	A	9.451e^-5	0.878	SYNONYMOUS_CODING Spt20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9795991	3R_9795991_SNP [dm3] 3R_13970269_SNP [dm6]	C	A	9.468e^-5	0.878	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3R	25635394	3R_25635394_SNP [dm3] 3R_29809672_SNP [dm6]	T	G	9.475e^-5	0.878	NON_SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19214557	3R_19214557_SNP [dm3] 3R_23388835_SNP [dm6]	C	A	9.504e^-5	0.878	NON_SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5658131	3R_5658131_SNP [dm3] 3R_9832409_SNP [dm6]	G	T	9.664e^-5	0.884	INTRON Teh1	TF binding site BDTNP1_TFBS_twi
2L	2935910	2L_2935910_SNP [dm3] 2L_2935910_SNP [dm6]	C	G	9.705e^-5	0.884	INTRON lilli
3R	5655544	3R_5655544_INS [dm3] 3R_9829822_INS [dm6]	T	TTGCTTT	9.713e^-5	0.884	INTRON Teh1
3L	16895371	3L_16895371_SNP [dm3] 3L_16902271_SNP [dm6]	C	T	9.894e^-5	0.885	INTRON Lmpt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	16413303	3L_16413303_SNP [dm3] 3L_16420203_SNP [dm6]	G	A	9.915e^-5	0.885	NON_SYNONYMOUS_CODING CG33158 UPSTREAM Aats-tyr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	9668831	2R_9668831_SNP [dm3] 2R_13781326_SNP [dm6]	G	T	9.980e^-5	0.885	INTRON Cpr50Ca
2R	9668832	2R_9668832_SNP [dm3] 2R_13781327_SNP [dm6]	T	G	9.980e^-5	0.885	INTRON Cpr50Ca
2L	12226645	2L_12226645_SNP [dm3] 2L_12226645_SNP [dm6]	G	A	1.001e^-4	0.885	INTRON aret
2R	6508079	2R_6508079_INS [dm3] 2R_10620574_INS [dm6]	G	GGCGGAATTCTGCTCACTTC...	1.004e^-4	0.885	INTRON CG11883
3L	15248274	3L_15248274_SNP [dm3] 3L_15255174_SNP [dm6]	A	T	1.005e^-4	0.885	INTERGENIC
3L	15248196	3L_15248196_SNP [dm3] 3L_15255096_SNP [dm6]	T	A	1.016e^-4	0.89	INTERGENIC
3L	13500747	3L_13500747_SNP [dm3] 3L_13507647_SNP [dm6]	C	G	1.023e^-4	0.89	SYNONYMOUS_CODING Spt20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13349916	2R_13349916_SNP [dm3] 2R_17462411_SNP [dm6]	C	G	1.025e^-4	0.89	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1200721	2L_1200721_SNP [dm3] 2L_1200721_SNP [dm6]	G	A	1.030e^-4	0.89	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2R	6850138	2R_6850138_INS [dm3] 2R_10962633_INS [dm6]	G	GG	1.046e^-4	0.895	INTERGENIC
2R	11471261	2R_11471261_SNP [dm3] 2R_15583756_SNP [dm6]	G	A	1.050e^-4	0.895	INTERGENIC
2R	12772428	2R_12772428_SNP [dm3] 2R_16884923_SNP [dm6]	A	C	1.050e^-4	0.895	DOWNSTREAM CG6472 INTRON CG8910
3R	12660679	3R_12660679_SNP [dm3] 3R_16834957_SNP [dm6]	T	A	1.065e^-4	0.899	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	8235840	3R_8235840_SNP [dm3] 3R_12410118_SNP [dm6]	T	C	1.078e^-4	0.899	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	10181000	3R_10181000_DEL [dm3] 3R_14355278_DEL [dm6]	TAGGGAA	T	1.092e^-4	0.899	INTRON NK7.1
3R	17747302	3R_17747302_SNP [dm3] 3R_21921580_SNP [dm6]	T	C	1.096e^-4	0.899	INTERGENIC
3L	17316868	3L_17316868_SNP [dm3] 3L_17323768_SNP [dm6]	C	A	1.098e^-4	0.899	NON_SYNONYMOUS_CODING CG13724 DOWNSTREAM CG13725
2L	7306148	2L_7306148_SNP [dm3] 2L_7306148_SNP [dm6]	G	A	1.108e^-4	0.899	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27410925	3R_27410925_SNP [dm3] 3R_31585203_SNP [dm6]	C	G	1.109e^-4	0.899	NON_SYNONYMOUS_CODING rod
3L	13042339	3L_13042339_SNP [dm3] 3L_13049239_SNP [dm6]	T	C	1.116e^-4	0.899	DOWNSTREAM CG11279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18330106	2R_18330106_SNP [dm3] 2R_22442601_SNP [dm6]	C	T	1.119e^-4	0.899	INTERGENIC
X	8968360	X_8968360_SNP [dm3] X_9074327_SNP [dm6]	T	G	1.121e^-4	0.899	INTRON CG44325
3R	8164617	3R_8164617_SNP [dm3] 3R_12338895_SNP [dm6]	T	C	1.124e^-4	0.899	EXON CR44941
2L	17101704	2L_17101704_DEL [dm3] 2L_17101704_DEL [dm6]	GA	G	1.130e^-4	0.899	INTERGENIC
2R	13016392	2R_13016392_SNP [dm3] 2R_17128887_SNP [dm6]	A	G	1.137e^-4	0.899	NON_SYNONYMOUS_CODING Cda9
3R	8372946	3R_8372946_SNP [dm3] 3R_12547224_SNP [dm6]	G	C	1.152e^-4	0.899	INTRON Octbeta3R
2R	7264227	2R_7264227_SNP [dm3] 2R_11376722_SNP [dm6]	T	A	1.154e^-4	0.899	SYNONYMOUS_CODING CG13203 DOWNSTREAM Tsp47F	TF binding site mE1_TFBS_chinmo
3L	10642157	3L_10642157_SNP [dm3] 3L_10649057_SNP [dm6]	G	A	1.161e^-4	0.899	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
3R	12566375	3R_12566375_SNP [dm3] 3R_16740653_SNP [dm6]	G	C	1.166e^-4	0.899	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
3L	10144428	3L_10144428_SNP [dm3] 3L_10151328_SNP [dm6]	G	A	1.168e^-4	0.899	UPSTREAM CG8072 DOWNSTREAM snoRNA:MeU2-A31 INTRON dpr10
X	14453868	X_14453868_SNP [dm3] X_14559835_SNP [dm6]	G	A	1.175e^-4	0.899	INTERGENIC
3L	6490804	3L_6490804_SNP [dm3] 3L_6497704_SNP [dm6]	C	T	1.181e^-4	0.899	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3070963	X_3070963_DEL [dm3] X_3176930_DEL [dm6]	AA	A	1.182e^-4	0.899	DOWNSTREAM CG3939 INTRON dnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	16408692	2L_16408692_SNP [dm3] 2L_16408692_SNP [dm6]	G	T	1.183e^-4	0.899	INTRON CG5888
3R	27410312	3R_27410312_SNP [dm3] 3R_31584590_SNP [dm6]	A	T	1.183e^-4	0.899	INTRON rod	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9668794	2R_9668794_SNP [dm3] 2R_13781289_SNP [dm6]	T	A	1.183e^-4	0.899	INTRON Cpr50Ca
3L	12740687	3L_12740687_SNP [dm3] 3L_12747587_SNP [dm6]	C	T	1.190e^-4	0.899	SYNONYMOUS_CODING Klc DOWNSTREAM CG32109
3R	20006816	3R_20006816_SNP [dm3] 3R_24181094_SNP [dm6]	A	C	1.193e^-4	0.899	UTR_3_PRIME CG13606 INTRON CG13606
2R	13344452	2R_13344452_SNP [dm3] 2R_17456947_SNP [dm6]	A	G	1.195e^-4	0.899	SYNONYMOUS_CODING robl UPSTREAM robls54B & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13343267	2R_13343267_SNP [dm3] 2R_17455762_SNP [dm6]	A	C	1.198e^-4	0.899	UTR_3_PRIME robls54B UPSTREAM robl DOWNSTREAM CG10764
3L	12641265	3L_12641265_SNP [dm3] 3L_12648165_SNP [dm6]	G	A	1.206e^-4	0.899	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	2712208	3R_2712208_SNP [dm3] 3R_6886486_SNP [dm6]	C	G	1.206e^-4	0.899	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8926920	2R_8926920_SNP [dm3] 2R_13039415_SNP [dm6]	T	C	1.212e^-4	0.899	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	12566386	2L_12566386_SNP [dm3] 2L_12566386_SNP [dm6]	T	G	1.217e^-4	0.899	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14222237	2R_14222237_SNP [dm3] 2R_18334732_SNP [dm6]	G	A	1.219e^-4	0.899	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	27407293	3R_27407293_SNP [dm3] 3R_31581571_SNP [dm6]	T	C	1.220e^-4	0.899	UPSTREAM pygo INTRON rod	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	6596885	3L_6596885_SNP [dm3] 3L_6603785_SNP [dm6]	A	C	1.223e^-4	0.899	UTR_5_PRIME CG8368 UPSTREAM ndl DOWNSTREAM zpg
3L	2200836	3L_2200836_SNP [dm3] 3L_2200836_SNP [dm6]	T	A	1.231e^-4	0.899	INTERGENIC
2R	11690078	2R_11690078_SNP [dm3] 2R_15802573_SNP [dm6]	A	C	1.232e^-4	0.899	INTRON Zasp52 & 1 other
3R	20848791	3R_20848791_INS [dm3] 3R_25023069_INS [dm6]	T	TC	1.238e^-4	0.899	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	24514248	3R_24514248_SNP [dm3] 3R_28688526_SNP [dm6]	T	G	1.242e^-4	0.899	INTRON CG9990
3R	3497440	3R_3497440_SNP [dm3] 3R_7671718_SNP [dm6]	C	T	1.249e^-4	0.901	INTRON Nlg1
3L	6452963	3L_6452963_SNP [dm3] 3L_6459863_SNP [dm6]	C	G	1.262e^-4	0.902	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
3R	10184289	3R_10184289_SNP [dm3] 3R_14358567_SNP [dm6]	T	A	1.267e^-4	0.902	UTR_3_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4117063	X_4117063_SNP [dm3] X_4223030_SNP [dm6]	T	C	1.270e^-4	0.902	SYNONYMOUS_CODING CG15570
2L	9844071	2L_9844071_SNP [dm3] 2L_9844071_SNP [dm6]	T	C	1.271e^-4	0.902	INTRON nAChRalpha6
X	14236500	X_14236500_SNP [dm3] X_14342467_SNP [dm6]	A	T	1.283e^-4	0.902	INTRON dpr8
3R	4243195	3R_4243195_SNP [dm3] 3R_8417473_SNP [dm6]	G	T	1.291e^-4	0.902	INTRON CG45263
3R	17908273	3R_17908273_SNP [dm3] 3R_22082551_SNP [dm6]	C	T	1.293e^-4	0.902	INTRON CG13408
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	1.297e^-4	0.902	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
3R	10181008	3R_10181008_SNP [dm3] 3R_14355286_SNP [dm6]	G	T	1.308e^-4	0.902	INTRON NK7.1
2L	9083721	2L_9083721_SNP [dm3] 2L_9083721_SNP [dm6]	C	A	1.313e^-4	0.902	UPSTREAM Toll-4 INTERGENIC
X	9476371	X_9476371_SNP [dm3] X_9582338_SNP [dm6]	T	C	1.316e^-4	0.902	UPSTREAM CR45540 INTERGENIC
3R	5654692	3R_5654692_SNP [dm3] 3R_9828970_SNP [dm6]	T	C	1.323e^-4	0.902	INTRON Teh1
3L	14975552	3L_14975552_SNP [dm3] 3L_14982452_SNP [dm6]	T	C	1.324e^-4	0.902	UPSTREAM CG5114 DOWNSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14516149	3L_14516149_SNP [dm3] 3L_14523049_SNP [dm6]	G	A	1.331e^-4	0.902	INTRON bbg	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	3210619	2L_3210619_SNP [dm3] 2L_3210619_SNP [dm6]	A	T	1.333e^-4	0.902	EXON CR45336
3R	3553155	3R_3553155_SNP [dm3] 3R_7727433_SNP [dm6]	A	T	1.343e^-4	0.902	INTERGENIC
3R	8233837	3R_8233837_INS [dm3] 3R_12408115_INS [dm6]	T	TGT	1.351e^-4	0.902	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	16916553	3L_16916553_SNP [dm3] 3L_16923453_SNP [dm6]	G	C	1.357e^-4	0.902	SYNONYMOUS_CODING CG13028 DOWNSTREAM Lmpt & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15244090	3L_15244090_DEL [dm3] 3L_15250990_DEL [dm6]	GTTTATGTTG	G	1.357e^-4	0.902	INTERGENIC
3L	12740576	3L_12740576_SNP [dm3] 3L_12747476_SNP [dm6]	G	A	1.361e^-4	0.902	SYNONYMOUS_CODING Klc DOWNSTREAM CG32109
3L	9161604	3L_9161604_SNP [dm3] 3L_9168504_SNP [dm6]	T	G	1.369e^-4	0.902	INTRON Rdl
2L	1200718	2L_1200718_SNP [dm3] 2L_1200718_SNP [dm6]	G	C	1.370e^-4	0.902	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2L	10103313	2L_10103313_SNP [dm3] 2L_10103313_SNP [dm6]	C	G	1.371e^-4	0.902	INTRON CG44153 & 1 other
3R	17908271	3R_17908271_SNP [dm3] 3R_22082549_SNP [dm6]	T	A	1.373e^-4	0.902	INTRON CG13408
3L	8077974	3L_8077974_SNP [dm3] 3L_8084874_SNP [dm6]	C	T	1.374e^-4	0.902	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
3R	6286293	3R_6286293_SNP [dm3] 3R_10460571_SNP [dm6]	G	T	1.378e^-4	0.902	UPSTREAM CR44939 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11353744	2R_11353744_SNP [dm3] 2R_15466239_SNP [dm6]	C	G	1.380e^-4	0.902	INTRON CG43729
3L	13500729	3L_13500729_SNP [dm3] 3L_13507629_SNP [dm6]	A	C	1.390e^-4	0.903	SYNONYMOUS_CODING Spt20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3456378	3R_3456378_SNP [dm3] 3R_7630656_SNP [dm6]	C	T	1.399e^-4	0.903	INTRON CG34127
X	14418888	X_14418888_SNP [dm3] X_14524855_SNP [dm6]	T	G	1.403e^-4	0.903	INTERGENIC
2R	7267791	2R_7267791_SNP [dm3] 2R_11380286_SNP [dm6]	C	T	1.406e^-4	0.903	DOWNSTREAM Sod3 INTERGENIC
3R	9654654	3R_9654654_SNP [dm3] 3R_13828932_SNP [dm6]	T	A	1.411e^-4	0.903	UPSTREAM Mst87F DOWNSTREAM CR43300 INTERGENIC
3R	19108359	3R_19108359_SNP [dm3] 3R_23282637_SNP [dm6]	G	A	1.413e^-4	0.903	INTRON Cdc16	TF binding site mE1_TFBS_sens
2R	16064233	2R_16064233_SNP [dm3] 2R_20176728_SNP [dm6]	G	A	1.420e^-4	0.903	INTERGENIC
3R	13817070	3R_13817070_SNP [dm3] 3R_17991348_SNP [dm6]	A	G	1.424e^-4	0.903	INTRON cpo
3L	12641267	3L_12641267_SNP [dm3] 3L_12648167_SNP [dm6]	T	G	1.428e^-4	0.903	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7306144	2L_7306144_SNP [dm3] 2L_7306144_SNP [dm6]	C	A	1.430e^-4	0.903	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	14453773	X_14453773_SNP [dm3] X_14559740_SNP [dm6]	A	G	1.441e^-4	0.906	INTERGENIC
X	9476270	X_9476270_SNP [dm3] X_9582237_SNP [dm6]	A	G	1.447e^-4	0.906	UPSTREAM CR45540 INTERGENIC
3R	1928809	3R_1928809_SNP [dm3] 3R_6103087_SNP [dm6]	T	G	1.448e^-4	0.906	DOWNSTREAM CR44929 INTRON CR44929	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
3R	26050488	3R_26050488_SNP [dm3] 3R_30224766_SNP [dm6]	G	A	1.468e^-4	0.914	INTERGENIC
3R	14156645	3R_14156645_SNP [dm3] 3R_18330923_SNP [dm6]	A	G	1.473e^-4	0.914	DOWNSTREAM CG15803 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
X	7883576	X_7883576_SNP [dm3] X_7989543_SNP [dm6]	G	T	1.481e^-4	0.914	INTERGENIC
X	14453770	X_14453770_SNP [dm3] X_14559737_SNP [dm6]	A	G	1.488e^-4	0.914	INTERGENIC
3R	17903195	3R_17903195_SNP [dm3] 3R_22077473_SNP [dm6]	T	C	1.490e^-4	0.914	UTR_3_PRIME how
2L	10102995	2L_10102995_SNP [dm3] 2L_10102995_SNP [dm6]	T	C	1.508e^-4	0.914	INTRON CG44153 & 1 other
3L	12641259	3L_12641259_INS [dm3] 3L_12648159_INS [dm6]	T	TGTT	1.508e^-4	0.914	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	1200724	2L_1200724_INS [dm3] 2L_1200724_INS [dm6]	A	ATATATATGT	1.510e^-4	0.914	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2L	8068653	2L_8068653_SNP [dm3] 2L_8068653_SNP [dm6]	C	T	1.510e^-4	0.914	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19264018	2R_19264018_SNP [dm3] 2R_23376495_SNP [dm6]	G	A	1.520e^-4	0.914	INTRON Golgin245	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18328361	2R_18328361_SNP [dm3] 2R_22440856_SNP [dm6]	A	G	1.541e^-4	0.914	INTERGENIC
3L	13325325	3L_13325325_SNP [dm3] 3L_13332225_SNP [dm6]	A	T	1.545e^-4	0.914	INTERGENIC
X	13352009	X_13352009_SNP [dm3] X_13457976_SNP [dm6]	C	A	1.550e^-4	0.914	UPSTREAM CG34324 INTRON Neto
2L	15775545	2L_15775545_DEL [dm3] 2L_15775545_DEL [dm6]	ATATGT	A	1.553e^-4	0.914	DOWNSTREAM CG43760 INTERGENIC
3L	6396814	3L_6396814_SNP [dm3] 3L_6403714_SNP [dm6]	T	A	1.562e^-4	0.914	INTRON CG42747
3L	12740738	3L_12740738_SNP [dm3] 3L_12747638_SNP [dm6]	A	G	1.567e^-4	0.914	SYNONYMOUS_CODING Klc DOWNSTREAM CG32109
2R	17155500	2R_17155500_SNP [dm3] 2R_21267995_SNP [dm6]	T	G	1.572e^-4	0.914	UPSTREAM CG30393 INTRON Rgk3
3R	9676783	3R_9676783_DEL [dm3] 3R_13851061_DEL [dm6]	GGAAAATTAAGCTATGCGAA...	CCC	1.574e^-4	0.914	INTERGENIC
3R	17727459	3R_17727459_SNP [dm3] 3R_21901737_SNP [dm6]	A	T	1.585e^-4	0.914	INTRON CG6678
3R	810934	3R_810934_SNP [dm3] 3R_4985212_SNP [dm6]	T	C	1.593e^-4	0.914	UPSTREAM CG14662 INTRON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16766136	2L_16766136_SNP [dm3] 2L_16766136_SNP [dm6]	A	G	1.596e^-4	0.914	UPSTREAM Mhc INTERGENIC
3L	15393564	3L_15393564_SNP [dm3] 3L_15400464_SNP [dm6]	T	A	1.605e^-4	0.914	INTERGENIC
2R	18854103	2R_18854103_INS [dm3] 2R_22966580_INS [dm6]	A	ATTGACAAGGAATA...	1.627e^-4	0.914	INTERGENIC
2R	7263459	2R_7263459_SNP [dm3] 2R_11375954_SNP [dm6]	T	A	1.629e^-4	0.914	INTRON CG13203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4883156	2L_4883156_SNP [dm3] 2L_4883156_SNP [dm6]	T	G	1.630e^-4	0.914	UPSTREAM CG3008 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
3R	13760305	3R_13760305_INS [dm3] 3R_17934583_INS [dm6]	C	CT	1.635e^-4	0.914	INTRON cpo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9806594	X_9806594_SNP [dm3] X_9912561_SNP [dm6]	A	G	1.643e^-4	0.914	INTERGENIC
X	3006827	X_3006827_SNP [dm3] X_3112794_SNP [dm6]	A	T	1.647e^-4	0.914	INTRON kirre
X	7484159	X_7484159_SNP [dm3] X_7590126_SNP [dm6]	G	T	1.655e^-4	0.914	INTERGENIC	regulatory region REDfly_CRMs
3R	13655792	3R_13655792_SNP [dm3] 3R_17830070_SNP [dm6]	C	G	1.662e^-4	0.914	INTRON tinc
2L	3395900	2L_3395900_SNP [dm3] 2L_3395900_SNP [dm6]	G	A	1.662e^-4	0.914	INTERGENIC
3R	14960689	3R_14960689_SNP [dm3] 3R_19134967_SNP [dm6]	G	A	1.664e^-4	0.914	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
X	9476378	X_9476378_SNP [dm3] X_9582345_SNP [dm6]	G	A	1.668e^-4	0.914	UPSTREAM CR45540 INTERGENIC
2L	15046425	2L_15046425_SNP [dm3] 2L_15046425_SNP [dm6]	G	A	1.675e^-4	0.914	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
3R	8286174	3R_8286174_SNP [dm3] 3R_12460452_SNP [dm6]	T	C	1.681e^-4	0.914	UTR_5_PRIME CG12267 UPSTREAM CG12267 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9576805	2L_9576805_SNP [dm3] 2L_9576805_SNP [dm6]	A	T	1.686e^-4	0.914	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14281057	2R_14281057_SNP [dm3] 2R_18393552_SNP [dm6]	G	T	1.701e^-4	0.914	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_inv
2R	9582154	2R_9582154_SNP [dm3] 2R_13694649_SNP [dm6]	A	G	1.713e^-4	0.914	INTRON fas
2R	8928540	2R_8928540_SNP [dm3] 2R_13041035_SNP [dm6]	C	A	1.719e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7222952	3L_7222952_SNP [dm3] 3L_7229852_SNP [dm6]	T	C	1.720e^-4	0.914	INTERGENIC
3L	7222953	3L_7222953_SNP [dm3] 3L_7229853_SNP [dm6]	G	T	1.720e^-4	0.914	INTERGENIC
3R	10892546	3R_10892546_SNP [dm3] 3R_15066824_SNP [dm6]	T	C	1.721e^-4	0.914	SYNONYMOUS_CODING dpr9
2R	12772399	2R_12772399_SNP [dm3] 2R_16884894_SNP [dm6]	T	A	1.721e^-4	0.914	DOWNSTREAM CG6472 INTRON CG8910
3R	12037781	3R_12037781_SNP [dm3] 3R_16212059_SNP [dm6]	G	C	1.723e^-4	0.914	INTERGENIC
2R	17262606	2R_17262606_SNP [dm3] 2R_21375101_SNP [dm6]	G	A	1.736e^-4	0.914	INTRON cv-2
3L	6396334	3L_6396334_SNP [dm3] 3L_6403234_SNP [dm6]	G	C	1.745e^-4	0.914	INTRON CG42747
3R	3554261	3R_3554261_SNP [dm3] 3R_7728539_SNP [dm6]	G	A	1.746e^-4	0.914	INTERGENIC
3R	8083342	3R_8083342_SNP [dm3] 3R_12257620_SNP [dm6]	G	C	1.755e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	5328786	X_5328786_SNP [dm3] X_5434753_SNP [dm6]	C	T	1.767e^-4	0.914	INTRON CR44471
X	9806551	X_9806551_SNP [dm3] X_9912518_SNP [dm6]	G	A	1.768e^-4	0.914	INTERGENIC
2R	9668822	2R_9668822_SNP [dm3] 2R_13781317_SNP [dm6]	A	G	1.770e^-4	0.914	INTRON Cpr50Ca
2R	17429249	2R_17429249_INS [dm3] 2R_21541744_INS [dm6]	A	AA	1.772e^-4	0.914	INTRON Egfr	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17429280	2R_17429280_DEL [dm3] 2R_21541775_DEL [dm6]	TTTC	T	1.772e^-4	0.914	INTRON Egfr	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	23011864	3R_23011864_SNP [dm3] 3R_27186142_SNP [dm6]	C	T	1.777e^-4	0.914	INTRON Ser	regulatory region REDfly_CRMs
2R	18327046	2R_18327046_SNP [dm3] 2R_22439541_SNP [dm6]	C	T	1.781e^-4	0.914	INTERGENIC
2R	13441356	2R_13441356_SNP [dm3] 2R_17553851_SNP [dm6]	G	T	1.789e^-4	0.914	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_sens
3L	18119876	3L_18119876_SNP [dm3] 3L_18126776_SNP [dm6]	A	G	1.795e^-4	0.914	INTERGENIC
3R	4582064	3R_4582064_DEL [dm3] 3R_8756342_DEL [dm6]	AGTAATACAAGTATCTAAAG...	A	1.796e^-4	0.914	DOWNSTREAM CR44228 INTRON CG11768 & 1 other
3R	9815037	3R_9815037_SNP [dm3] 3R_13989315_SNP [dm6]	G	T	1.802e^-4	0.914	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	16556338	3L_16556338_SNP [dm3] 3L_16563238_SNP [dm6]	T	A	1.803e^-4	0.914	DOWNSTREAM Mipp1 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	14122277	3L_14122277_SNP [dm3] 3L_14129177_SNP [dm6]	C	A	1.805e^-4	0.914	INTRON Sox21b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2186353	3L_2186353_SNP [dm3] 3L_2186353_SNP [dm6]	C	T	1.808e^-4	0.914	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16062788	2R_16062788_SNP [dm3] 2R_20175283_SNP [dm6]	T	A	1.818e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23953662	3R_23953662_SNP [dm3] 3R_28127940_SNP [dm6]	C	G	1.818e^-4	0.914	INTERGENIC
3R	8083034	3R_8083034_SNP [dm3] 3R_12257312_SNP [dm6]	A	T	1.822e^-4	0.914	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	7883640	X_7883640_SNP [dm3] X_7989607_SNP [dm6]	T	A	1.826e^-4	0.914	INTERGENIC
3R	1756602	3R_1756602_SNP [dm3] 3R_5930880_SNP [dm6]	A	G	1.828e^-4	0.914	INTRON CG34113
3R	8237029	3R_8237029_SNP [dm3] 3R_12411307_SNP [dm6]	T	C	1.834e^-4	0.914	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9669205	2R_9669205_SNP [dm3] 2R_13781700_SNP [dm6]	T	C	1.839e^-4	0.914	INTRON Cpr50Ca
2R	16140461	2R_16140461_SNP [dm3] 2R_20252956_SNP [dm6]	C	A	1.844e^-4	0.914	INTRON CG9864
3R	27400255	3R_27400255_SNP [dm3] 3R_31574533_SNP [dm6]	A	T	1.849e^-4	0.914	NON_SYNONYMOUS_CODING gammaCOP	TF binding site mE1_TFBS_cad
X	3517989	X_3517989_SNP [dm3] X_3623956_SNP [dm6]	T	A	1.852e^-4	0.914	INTRON AstA-R1
2R	13016545	2R_13016545_SNP [dm3] 2R_17129040_SNP [dm6]	C	G	1.859e^-4	0.914	NON_SYNONYMOUS_CODING Cda9
3L	6979417	3L_6979417_SNP [dm3] 3L_6986317_SNP [dm6]	A	G	1.861e^-4	0.914	INTERGENIC
X	9446772	X_9446772_SNP [dm3] X_9552739_SNP [dm6]	G	A	1.862e^-4	0.914	SYNONYMOUS_CODING l_1_G0320	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	8928543	2R_8928543_SNP [dm3] 2R_13041038_SNP [dm6]	T	C	1.867e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9302746	3L_9302746_SNP [dm3] 3L_9309646_SNP [dm6]	T	C	1.871e^-4	0.914	INTERGENIC
2R	17429247	2R_17429247_SNP [dm3] 2R_21541742_SNP [dm6]	A	T	1.871e^-4	0.914	INTRON Egfr	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10181011	3R_10181011_SNP [dm3] 3R_14355289_SNP [dm6]	G	A	1.878e^-4	0.914	INTRON NK7.1
2L	3403110	2L_3403110_SNP [dm3] 2L_3403110_SNP [dm6]	G	A	1.881e^-4	0.914	INTERGENIC
3L	12247082	3L_12247082_SNP [dm3] 3L_12253982_SNP [dm6]	C	A	1.881e^-4	0.914	INTRON app
3R	15636807	3R_15636807_SNP [dm3] 3R_19811085_SNP [dm6]	A	T	1.893e^-4	0.914	INTRON bnl
3R	13970328	3R_13970328_SNP [dm3] 3R_18144606_SNP [dm6]	T	C	1.897e^-4	0.914	INTERGENIC
2R	13349884	2R_13349884_DEL [dm3] 2R_17462379_DEL [dm6]	GAG	G	1.898e^-4	0.914	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8078158	2L_8078158_SNP [dm3] 2L_8078158_SNP [dm6]	G	T	1.919e^-4	0.914	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
3R	6364166	3R_6364166_SNP [dm3] 3R_10538444_SNP [dm6]	A	T	1.926e^-4	0.914	INTRON hth
2L	9576778	2L_9576778_SNP [dm3] 2L_9576778_SNP [dm6]	T	C	1.926e^-4	0.914	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10103123	2L_10103123_SNP [dm3] 2L_10103123_SNP [dm6]	A	G	1.928e^-4	0.914	INTRON CG44153 & 1 other
2R	14219961	2R_14219961_SNP [dm3] 2R_18332456_SNP [dm6]	T	C	1.931e^-4	0.914	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	19969059	3L_19969059_SNP [dm3] 3L_19975959_SNP [dm6]	G	T	1.933e^-4	0.914	INTRON Ac76E
3L	2062014	3L_2062014_SNP [dm3] 3L_2062014_SNP [dm6]	C	T	1.936e^-4	0.914	INTRON sls
3R	11128835	3R_11128835_SNP [dm3] 3R_15303113_SNP [dm6]	A	C	1.939e^-4	0.914	INTRON Tm1
3R	24518302	3R_24518302_SNP [dm3] 3R_28692580_SNP [dm6]	G	T	1.941e^-4	0.914	SYNONYMOUS_CODING CG9990	TF binding site mE1_TFBS_cad
3R	2865935	3R_2865935_SNP [dm3] 3R_7040213_SNP [dm6]	T	C	1.944e^-4	0.914	DOWNSTREAM CR44933 INTERGENIC	transposable element FlyBase
3R	10659273	3R_10659273_SNP [dm3] 3R_14833551_SNP [dm6]	G	A	1.945e^-4	0.914	INTRON btsz
2R	19167252	2R_19167252_SNP [dm3] 2R_23279729_SNP [dm6]	T	A	1.949e^-4	0.914	INTERGENIC
3L	2061952	3L_2061952_SNP [dm3] 3L_2061952_SNP [dm6]	A	T	1.957e^-4	0.914	INTRON sls
2R	20367863	2R_20367863_SNP [dm3] 2R_24480340_SNP [dm6]	A	G	1.957e^-4	0.914	INTRON CG13579
3L	12641247	3L_12641247_SNP [dm3] 3L_12648147_SNP [dm6]	A	C	1.960e^-4	0.914	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18260132	2R_18260132_SNP [dm3] 2R_22372627_SNP [dm6]	A	C	1.962e^-4	0.914	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2L	4896797	2L_4896797_SNP [dm3] 2L_4896797_SNP [dm6]	A	T	1.970e^-4	0.914	INTRON CG3036
3L	19961534	3L_19961534_SNP [dm3] 3L_19968434_SNP [dm6]	T	A	1.983e^-4	0.914	INTRON Ac76E
3R	2169004	3R_2169004_SNP [dm3] 3R_6343282_SNP [dm6]	A	G	1.984e^-4	0.914	NON_SYNONYMOUS_CODING CG10298 UPSTREAM CG17919 DOWNSTREAM CG17917
3R	13817481	3R_13817481_SNP [dm3] 3R_17991759_SNP [dm6]	T	A	1.985e^-4	0.914	INTRON cpo
X	7322810	X_7322810_SNP [dm3] X_7428777_SNP [dm6]	T	G	2.002e^-4	0.914	INTERGENIC
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	2.005e^-4	0.914	INTRON Octbeta3R
3L	6316959	3L_6316959_SNP [dm3] 3L_6323859_SNP [dm6]	C	T	2.012e^-4	0.914	INTERGENIC
3L	4216821	3L_4216821_SNP [dm3] 3L_4216821_SNP [dm6]	G	A	2.024e^-4	0.914	SYNONYMOUS_CODING CG43367 DOWNSTREAM Cpr64Ad
3R	12659741	3R_12659741_SNP [dm3] 3R_16834019_SNP [dm6]	T	C	2.035e^-4	0.914	DOWNSTREAM iab-8 INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	15531869	X_15531869_SNP [dm3] X_15637836_SNP [dm6]	C	G	2.041e^-4	0.914	DOWNSTREAM CR44423 INTERGENIC
3L	2549481	3L_2549481_SNP [dm3] 3L_2549481_SNP [dm6]	G	A	2.046e^-4	0.914	INTRON Spn
3R	7776051	3R_7776051_SNP [dm3] 3R_11950329_SNP [dm6]	G	C	2.047e^-4	0.914	NON_SYNONYMOUS_CODING CG31211	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21745800	3R_21745800_SNP [dm3] 3R_25920078_SNP [dm6]	T	C	2.049e^-4	0.914	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG14546
3R	17682926	3R_17682926_SNP [dm3] 3R_21857204_SNP [dm6]	C	T	2.053e^-4	0.914	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	16647464	3R_16647464_SNP [dm3] 3R_20821742_SNP [dm6]	C	A	2.054e^-4	0.914	UTR_5_PRIME CG17271 UPSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
X	14455790	X_14455790_SNP [dm3] X_14561757_SNP [dm6]	T	A	2.057e^-4	0.914	INTERGENIC
2L	2629915	2L_2629915_SNP [dm3] 2L_2629915_SNP [dm6]	G	A	2.059e^-4	0.914	INTERGENIC
3R	26898189	3R_26898189_SNP [dm3] 3R_31072467_SNP [dm6]	T	C	2.076e^-4	0.914	INTRON Sox100B
2R	9972110	2R_9972110_SNP [dm3] 2R_14084605_SNP [dm6]	T	C	2.080e^-4	0.914	INTRON Prosap	TF binding site mE1_TFBS_bab1
3L	19962531	3L_19962531_SNP [dm3] 3L_19969431_SNP [dm6]	G	A	2.082e^-4	0.914	INTRON Ac76E
3L	4110785	3L_4110785_SNP [dm3] 3L_4110785_SNP [dm6]	G	A	2.084e^-4	0.914	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	3396440	2L_3396440_SNP [dm3] 2L_3396440_SNP [dm6]	G	A	2.091e^-4	0.914	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14227634	2R_14227634_INS [dm3] 2R_18340129_INS [dm6]	C	CC	2.094e^-4	0.914	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16504319	2L_16504319_MNP [dm3] 2L_16504319_MNP [dm6]	ATA	CCC	2.094e^-4	0.914	INTRON Tpr2
2L	2629944	2L_2629944_SNP [dm3] 2L_2629944_SNP [dm6]	C	T	2.095e^-4	0.914	INTERGENIC
2R	18260231	2R_18260231_SNP [dm3] 2R_22372726_SNP [dm6]	A	G	2.097e^-4	0.914	DOWNSTREAM CR44759 INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10892706	2R_10892706_SNP [dm3] 2R_15005201_SNP [dm6]	C	T	2.097e^-4	0.914	INTERGENIC
2R	18932280	2R_18932280_SNP [dm3] 2R_23044757_SNP [dm6]	T	G	2.106e^-4	0.914	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	15480055	3R_15480055_SNP [dm3] 3R_19654333_SNP [dm6]	A	G	2.114e^-4	0.914	SYNONYMOUS_CODING CG6184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15678690	3L_15678690_SNP [dm3] 3L_15685590_SNP [dm6]	A	T	2.114e^-4	0.914	DOWNSTREAM CG34452 INTRON pgant8	TF binding site mE1_TFBS_inv
X	6330521	X_6330521_SNP [dm3] X_6436488_SNP [dm6]	A	G	2.116e^-4	0.914	INTRON CG42340
2L	19402576	2L_19402576_SNP [dm3] 2L_19402576_SNP [dm6]	T	A	2.118e^-4	0.914	DOWNSTREAM Pax & 1 other INTRON Pax
2R	20091862	2R_20091862_SNP [dm3] 2R_24204339_SNP [dm6]	G	C	2.119e^-4	0.914	UTR_3_PRIME CG11406 INTRON CG11406
3R	6912069	3R_6912069_SNP [dm3] 3R_11086347_SNP [dm6]	T	C	2.127e^-4	0.914	UPSTREAM CR44940 INTERGENIC
3L	16750724	3L_16750724_SNP [dm3] 3L_16757624_SNP [dm6]	G	A	2.132e^-4	0.914	INTERGENIC
2L	2629729	2L_2629729_SNP [dm3] 2L_2629729_SNP [dm6]	T	G	2.138e^-4	0.914	INTERGENIC
3R	7768218	3R_7768218_SNP [dm3] 3R_11942496_SNP [dm6]	A	C	2.147e^-4	0.914	INTRON Cad87A
2R	12778172	2R_12778172_SNP [dm3] 2R_16890667_SNP [dm6]	T	C	2.152e^-4	0.914	INTRON CG8910
2R	19912168	2R_19912168_SNP [dm3] 2R_24024645_SNP [dm6]	C	T	2.152e^-4	0.914	DOWNSTREAM CG11388 INTRON Adk2 EXON CR45350	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3782663	2L_3782663_SNP [dm3] 2L_3782663_SNP [dm6]	C	A	2.154e^-4	0.914	SYNONYMOUS_CODING bowl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2731489	3R_2731489_SNP [dm3] 3R_6905767_SNP [dm6]	A	T	2.158e^-4	0.914	INTRON Antp
X	6195576	X_6195576_SNP [dm3] X_6301543_SNP [dm6]	G	A	2.164e^-4	0.914	UPSTREAM CG12219 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3R	10892557	3R_10892557_SNP [dm3] 3R_15066835_SNP [dm6]	C	T	2.167e^-4	0.914	NON_SYNONYMOUS_CODING dpr9
2R	18932393	2R_18932393_SNP [dm3] 2R_23044870_SNP [dm6]	A	T	2.172e^-4	0.914	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3763244	2R_3763244_SNP [dm3] 2R_7875739_SNP [dm6]	A	G	2.188e^-4	0.914	INTRON Dgk
3R	8233903	3R_8233903_SNP [dm3] 3R_12408181_SNP [dm6]	C	T	2.189e^-4	0.914	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	12561413	3L_12561413_SNP [dm3] 3L_12568313_SNP [dm6]	A	T	2.194e^-4	0.914	INTRON sowah
3R	25834120	3R_25834120_SNP [dm3] 3R_30008398_SNP [dm6]	T	A	2.196e^-4	0.914	INTRON Nlp & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	10918645	3L_10918645_SNP [dm3] 3L_10925545_SNP [dm6]	C	A	2.197e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3098982	2L_3098982_SNP [dm3] 2L_3098982_SNP [dm6]	G	C	2.204e^-4	0.914	INTRON toc
3R	20006700	3R_20006700_SNP [dm3] 3R_24180978_SNP [dm6]	C	T	2.208e^-4	0.914	UTR_3_PRIME CG13606 INTRON CG13606
X	19091980	X_19091980_SNP [dm3] X_19197947_SNP [dm6]	G	A	2.225e^-4	0.914	UTR_3_PRIME CG7990
2R	6305228	2R_6305228_SNP [dm3] 2R_10417723_SNP [dm6]	T	C	2.225e^-4	0.914	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	8745771	3L_8745771_SNP [dm3] 3L_8752671_SNP [dm6]	G	A	2.228e^-4	0.914	UPSTREAM Fhos INTERGENIC
3R	15480100	3R_15480100_SNP [dm3] 3R_19654378_SNP [dm6]	G	A	2.231e^-4	0.914	SYNONYMOUS_CODING CG6184	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18034617	3L_18034617_SNP [dm3] 3L_18041517_SNP [dm6]	C	T	2.234e^-4	0.914	INTRON Eip75B & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4715162	3L_4715162_SNP [dm3] 3L_4715162_SNP [dm6]	C	T	2.235e^-4	0.914	INTRON RhoGEF64C
2R	14664331	2R_14664331_SNP [dm3] 2R_18776826_SNP [dm6]	T	G	2.241e^-4	0.914	SPLICE_SITE_REGION CG15093 UTR_5_PRIME CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	18442736	X_18442736_SNP [dm3] X_18548703_SNP [dm6]	G	T	2.243e^-4	0.914	INTRON Bx	TF binding site mE1_TFBS_HSA
3L	15674881	3L_15674881_DEL [dm3] 3L_15681781_DEL [dm6]	AGTCCAA	A	2.245e^-4	0.914	DOWNSTREAM CG7304
3R	2312098	3R_2312098_SNP [dm3] 3R_6486376_SNP [dm6]	C	T	2.247e^-4	0.914	UPSTREAM CG15186 INTRON CG15186
X	4123081	X_4123081_DEL [dm3] X_4229048_DEL [dm6]	ACCTATGAAACAAATTTAAA...	A	2.263e^-4	0.918	INTERGENIC
3L	2274178	3L_2274178_SNP [dm3] 3L_2274178_SNP [dm6]	C	T	2.272e^-4	0.918	DOWNSTREAM tRNA:CR32303 INTERGENIC
3R	10226008	3R_10226008_SNP [dm3] 3R_14400286_SNP [dm6]	A	G	2.276e^-4	0.918	INTRON cv-c	TF binding site mE1_TFBS_Trl
3R	17682885	3R_17682885_SNP [dm3] 3R_21857163_SNP [dm6]	A	T	2.281e^-4	0.918	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	2143647	3R_2143647_SNP [dm3] 3R_6317925_SNP [dm6]	T	C	2.283e^-4	0.918	SYNONYMOUS_CODING Osi17
3R	23000281	3R_23000281_SNP [dm3] 3R_27174559_SNP [dm6]	A	T	2.286e^-4	0.918	SPLICE_SITE_REGION Ser INTRON Ser	TF binding site mE1_TFBS_cad
2R	17429287	2R_17429287_INS [dm3] 2R_21541782_INS [dm6]	A	AAATAT	2.298e^-4	0.919	INTRON Egfr	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	13345680	2R_13345680_SNP [dm3] 2R_17458175_SNP [dm6]	G	C	2.303e^-4	0.919	UPSTREAM CG14478 INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11232674	3L_11232674_SNP [dm3] 3L_11239574_SNP [dm6]	G	A	2.304e^-4	0.919	INTERGENIC
3L	3801186	3L_3801186_SNP [dm3] 3L_3801186_SNP [dm6]	C	T	2.313e^-4	0.92	UTR_5_PRIME CG32264 INTRON CG32264
3R	11980368	3R_11980368_SNP [dm3] 3R_16154646_SNP [dm6]	C	G	2.320e^-4	0.92	UPSTREAM CG6006 INTERGENIC
3R	20886391	3R_20886391_SNP [dm3] 3R_25060669_SNP [dm6]	G	T	2.320e^-4	0.92	INTRON Unc-13-4B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22871041	3R_22871041_SNP [dm3] 3R_27045319_SNP [dm6]	T	G	2.336e^-4	0.923	INTRON RYa-R
2R	13349374	2R_13349374_SNP [dm3] 2R_17461869_SNP [dm6]	T	C	2.352e^-4	0.923	INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12641249	3L_12641249_SNP [dm3] 3L_12648149_SNP [dm6]	A	G	2.355e^-4	0.923	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	7483502	X_7483502_SNP [dm3] X_7589469_SNP [dm6]	G	A	2.356e^-4	0.923	INTERGENIC	regulatory region REDfly_CRMs
3L	19963863	3L_19963863_SNP [dm3] 3L_19970763_SNP [dm6]	T	G	2.357e^-4	0.923	INTRON Ac76E	TF binding site mE1_TFBS_chinmo
2L	19583524	2L_19583524_SNP [dm3] 2L_19583524_SNP [dm6]	A	T	2.364e^-4	0.923	SYNONYMOUS_CODING CG10262 UPSTREAM CG10366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	15126170	2R_15126170_SNP [dm3] 2R_19238665_SNP [dm6]	C	T	2.372e^-4	0.923	INTRON cora
2R	19179258	2R_19179258_SNP [dm3] 2R_23291735_SNP [dm6]	T	A	2.385e^-4	0.923	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15051967	2L_15051967_SNP [dm3] 2L_15051967_SNP [dm6]	G	A	2.389e^-4	0.923	SYNONYMOUS_CODING ck	regulatory region REDfly_CRMs
2R	9669198	2R_9669198_SNP [dm3] 2R_13781693_SNP [dm6]	A	C	2.389e^-4	0.923	INTRON Cpr50Ca
3L	1376291	3L_1376291_SNP [dm3] 3L_1376291_SNP [dm6]	C	T	2.398e^-4	0.923	INTRON Ptp61F & 1 other
X	20504782	X_20504782_SNP [dm3] X_20633755_SNP [dm6]	C	T	2.404e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	19756818	2L_19756818_SNP [dm3] 2L_19756818_SNP [dm6]	A	T	2.415e^-4	0.923	UTR_5_PRIME CG10631 DOWNSTREAM CG10628
2L	4074467	2L_4074467_SNP [dm3] 2L_4074467_SNP [dm6]	T	C	2.418e^-4	0.923	INTRON ed EXON CR44984
3R	2240173	3R_2240173_SNP [dm3] 3R_6414451_SNP [dm6]	T	G	2.419e^-4	0.923	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	19091953	X_19091953_SNP [dm3] X_19197920_SNP [dm6]	G	A	2.420e^-4	0.923	UTR_3_PRIME CG7990
3L	13042287	3L_13042287_SNP [dm3] 3L_13049187_SNP [dm6]	A	T	2.441e^-4	0.923	DOWNSTREAM CG11279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8151838	3R_8151838_SNP [dm3] 3R_12326116_SNP [dm6]	C	T	2.445e^-4	0.923	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	17874708	3R_17874708_INS [dm3] 3R_22048986_INS [dm6]	C	CAGGC	2.453e^-4	0.923	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	8161603	3R_8161603_SNP [dm3] 3R_12335881_SNP [dm6]	C	G	2.454e^-4	0.923	UPSTREAM CR44941 INTERGENIC
3R	14650959	3R_14650959_SNP [dm3] 3R_18825237_SNP [dm6]	A	G	2.454e^-4	0.923	INTRON CG18208
2R	18011206	2R_18011206_SNP [dm3] 2R_22123701_SNP [dm6]	T	C	2.458e^-4	0.923	NON_SYNONYMOUS_CODING mei-S332 DOWNSTREAM GM130	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2877248	2L_2877248_SNP [dm3] 2L_2877248_SNP [dm6]	A	G	2.459e^-4	0.923	SYNONYMOUS_CODING Prx6005 DOWNSTREAM CG8814
3L	7222938	3L_7222938_SNP [dm3] 3L_7229838_SNP [dm6]	T	A	2.462e^-4	0.923	INTERGENIC
3R	8349830	3R_8349830_SNP [dm3] 3R_12524108_SNP [dm6]	G	T	2.468e^-4	0.923	INTRON Octbeta3R
3L	9395702	3L_9395702_SNP [dm3] 3L_9402602_SNP [dm6]	C	T	2.469e^-4	0.923	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12037784	3R_12037784_SNP [dm3] 3R_16212062_SNP [dm6]	T	C	2.470e^-4	0.923	INTERGENIC
3R	14654796	3R_14654796_SNP [dm3] 3R_18829074_SNP [dm6]	A	G	2.476e^-4	0.923	INTRON CG18208
2R	14514526	2R_14514526_SNP [dm3] 2R_18627021_SNP [dm6]	A	C	2.478e^-4	0.923	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site mE1_TFBS_sens
3R	13139717	3R_13139717_SNP [dm3] 3R_17313995_SNP [dm6]	T	C	2.482e^-4	0.923	INTERGENIC
3L	2200835	3L_2200835_SNP [dm3] 3L_2200835_SNP [dm6]	A	T	2.485e^-4	0.923	INTERGENIC
3R	7777712	3R_7777712_SNP [dm3] 3R_11951990_SNP [dm6]	G	T	2.487e^-4	0.923	INTRON CG31211	TF binding site mE1_TFBS_cad
2R	7267624	2R_7267624_DEL [dm3] 2R_11380119_DEL [dm6]	CC	G	2.489e^-4	0.923	UPSTREAM Tsp47F DOWNSTREAM Sod3 INTERGENIC
2R	18013795	2R_18013795_SNP [dm3] 2R_22126290_SNP [dm6]	A	G	2.504e^-4	0.926	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad
3R	9552840	3R_9552840_SNP [dm3] 3R_13727118_SNP [dm6]	T	C	2.511e^-4	0.926	INTRON CG34383
2L	21725821	2L_21725821_SNP [dm3] 2L_21725821_SNP [dm6]	A	C	2.515e^-4	0.926	INTRON CG31619	transposable element FlyBase
2R	6988679	2R_6988679_INS [dm3] 2R_11101174_INS [dm6]	T	TTTTCCGTGAT...	2.532e^-4	0.926	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10701813	2R_10701813_SNP [dm3] 2R_14814308_SNP [dm6]	T	C	2.533e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9135499	3L_9135499_SNP [dm3] 3L_9142399_SNP [dm6]	T	A	2.542e^-4	0.926	DOWNSTREAM nwk INTRON nwk
3R	19762489	3R_19762489_SNP [dm3] 3R_23936767_SNP [dm6]	C	T	2.544e^-4	0.926	DOWNSTREAM CG5854 INTRON Gdh
3R	8234973	3R_8234973_SNP [dm3] 3R_12409251_SNP [dm6]	T	A	2.547e^-4	0.926	SPLICE_SITE_REGION CG5196 UTR_5_PRIME CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9732275	X_9732275_SNP [dm3] X_9838242_SNP [dm6]	G	A	2.562e^-4	0.926	INTRON CG32698
2R	3890508	2R_3890508_SNP [dm3] 2R_8003003_SNP [dm6]	C	G	2.564e^-4	0.926	UPSTREAM CG11191 INTERGENIC
3R	18705710	3R_18705710_SNP [dm3] 3R_22879988_SNP [dm6]	T	A	2.566e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9677291	3R_9677291_SNP [dm3] 3R_13851569_SNP [dm6]	C	T	2.567e^-4	0.926	INTERGENIC
3R	9239973	3R_9239973_SNP [dm3] 3R_13414251_SNP [dm6]	T	C	2.568e^-4	0.926	INTRON yellow-e
2L	14167741	2L_14167741_SNP [dm3] 2L_14167741_SNP [dm6]	A	T	2.568e^-4	0.926	INTRON CG43333
X	10568445	X_10568445_SNP [dm3] X_10674412_SNP [dm6]	A	C	2.576e^-4	0.927	UPSTREAM CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25193260	3R_25193260_SNP [dm3] 3R_29367538_SNP [dm6]	A	T	2.582e^-4	0.927	INTERGENIC
X	10567261	X_10567261_SNP [dm3] X_10673228_SNP [dm6]	G	C	2.593e^-4	0.927	SYNONYMOUS_CODING CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
2L	8078470	2L_8078470_SNP [dm3] 2L_8078470_SNP [dm6]	G	A	2.594e^-4	0.927	SYNONYMOUS_CODING Mcr
2R	14082525	2R_14082525_SNP [dm3] 2R_18195020_SNP [dm6]	A	G	2.596e^-4	0.927	INTERGENIC
3L	12641238	3L_12641238_SNP [dm3] 3L_12648138_SNP [dm6]	T	G	2.599e^-4	0.927	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10978811	X_10978811_SNP [dm3] X_11084778_SNP [dm6]	A	G	2.620e^-4	0.931	INTRON sev
X	20334942	X_20334942_SNP [dm3] X_20463915_SNP [dm6]	G	A	2.633e^-4	0.931	NON_SYNONYMOUS_CODING CG32506	TF binding site mE1_TFBS_chinmo
X	9732289	X_9732289_SNP [dm3] X_9838256_SNP [dm6]	A	T	2.635e^-4	0.931	INTRON CG32698
2R	17429357	2R_17429357_SNP [dm3] 2R_21541852_SNP [dm6]	A	T	2.644e^-4	0.931	INTRON Egfr	TF binding site mE1_TFBS_Trl
3R	8028018	3R_8028018_SNP [dm3] 3R_12202296_SNP [dm6]	G	A	2.647e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10456649	3L_10456649_SNP [dm3] 3L_10463549_SNP [dm6]	T	C	2.663e^-4	0.931	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	10579742	3R_10579742_SNP [dm3] 3R_14754020_SNP [dm6]	C	A	2.663e^-4	0.931	NON_SYNONYMOUS_CODING CG7362 INTRON jvl	TF binding site mE1_TFBS_cad
3R	12630657	3R_12630657_SNP [dm3] 3R_16804935_SNP [dm6]	C	T	2.664e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2630019	2L_2630019_SNP [dm3] 2L_2630019_SNP [dm6]	C	G	2.664e^-4	0.931	INTERGENIC
3L	5074563	3L_5074563_SNP [dm3] 3L_5074563_SNP [dm6]	T	A	2.670e^-4	0.931	INTRON Con
3R	4511174	3R_4511174_SNP [dm3] 3R_8685452_SNP [dm6]	G	A	2.672e^-4	0.931	UPSTREAM CG44227 INTRON CR44937	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
3L	9395676	3L_9395676_SNP [dm3] 3L_9402576_SNP [dm6]	T	C	2.676e^-4	0.931	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	10104398	2L_10104398_SNP [dm3] 2L_10104398_SNP [dm6]	C	T	2.687e^-4	0.931	INTRON CG44153 & 1 other
3R	27417348	3R_27417348_SNP [dm3] 3R_31591626_SNP [dm6]	A	T	2.692e^-4	0.931	NON_SYNONYMOUS_CODING CG1638	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2414399	2L_2414399_SNP [dm3] 2L_2414399_SNP [dm6]	T	C	2.694e^-4	0.931	DOWNSTREAM CG31948 INTRON CG18641
3L	15248176	3L_15248176_SNP [dm3] 3L_15255076_SNP [dm6]	T	A	2.719e^-4	0.931	INTERGENIC
3L	14705579	3L_14705579_SNP [dm3] 3L_14712479_SNP [dm6]	G	A	2.722e^-4	0.931	INTRON ome
2R	18853962	2R_18853962_SNP [dm3] 2R_22966439_SNP [dm6]	A	G	2.749e^-4	0.931	INTERGENIC
2R	17489880	2R_17489880_SNP [dm3] 2R_21602375_SNP [dm6]	A	G	2.758e^-4	0.931	INTERGENIC
3R	22322015	3R_22322015_SNP [dm3] 3R_26496293_SNP [dm6]	A	G	2.758e^-4	0.931	INTRON plum
3L	12742170	3L_12742170_SNP [dm3] 3L_12749070_SNP [dm6]	A	G	2.760e^-4	0.931	UPSTREAM Klc INTRON Klc
X	11534543	X_11534543_SNP [dm3] X_11640510_SNP [dm6]	C	A	2.765e^-4	0.931	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl
3R	10181555	3R_10181555_SNP [dm3] 3R_14355833_SNP [dm6]	A	T	2.775e^-4	0.931	INTRON NK7.1
3L	15754559	3L_15754559_SNP [dm3] 3L_15761459_SNP [dm6]	A	G	2.776e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14323316	2L_14323316_SNP [dm3] 2L_14323316_SNP [dm6]	C	G	2.777e^-4	0.931	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4110752	3L_4110752_SNP [dm3] 3L_4110752_SNP [dm6]	G	T	2.785e^-4	0.931	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	13649417	2R_13649417_SNP [dm3] 2R_17761912_SNP [dm6]	A	G	2.787e^-4	0.931	INTRON CG5009
3R	8352983	3R_8352983_SNP [dm3] 3R_12527261_SNP [dm6]	T	A	2.787e^-4	0.931	INTRON Octbeta3R & 1 other
3L	16916605	3L_16916605_SNP [dm3] 3L_16923505_SNP [dm6]	C	A	2.788e^-4	0.931	NON_SYNONYMOUS_CODING CG13028 DOWNSTREAM CG13023	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10642204	3L_10642204_SNP [dm3] 3L_10649104_SNP [dm6]	G	C	2.792e^-4	0.931	INTRON CG32066
3R	9325681	3R_9325681_SNP [dm3] 3R_13499959_SNP [dm6]	T	A	2.802e^-4	0.931	INTERGENIC
3R	16864911	3R_16864911_SNP [dm3] 3R_21039189_SNP [dm6]	G	A	2.807e^-4	0.931	INTRON Dhc93AB
2L	14167729	2L_14167729_SNP [dm3] 2L_14167729_SNP [dm6]	A	T	2.820e^-4	0.931	INTRON CG43333
2L	13317891	2L_13317891_SNP [dm3] 2L_13317891_SNP [dm6]	G	A	2.828e^-4	0.931	INTRON CG43778
2R	18011271	2R_18011271_SNP [dm3] 2R_22123766_SNP [dm6]	A	T	2.829e^-4	0.931	SYNONYMOUS_CODING mei-S332 DOWNSTREAM GM130	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	18259337	2R_18259337_SNP [dm3] 2R_22371832_SNP [dm6]	C	T	2.830e^-4	0.931	INTRON Liprin-gamma
3R	3243856	3R_3243856_SNP [dm3] 3R_7418134_SNP [dm6]	C	T	2.836e^-4	0.931	UPSTREAM CG31544 INTERGENIC
2L	4589702	2L_4589702_SNP [dm3] 2L_4589702_SNP [dm6]	G	A	2.840e^-4	0.931	INTRON dp
2R	17143620	2R_17143620_SNP [dm3] 2R_21256115_SNP [dm6]	A	G	2.844e^-4	0.931	UTR_5_PRIME Rgk3
X	11098629	X_11098629_SNP [dm3] X_11204596_SNP [dm6]	C	A	2.845e^-4	0.931	INTERGENIC
3R	22559561	3R_22559561_SNP [dm3] 3R_26733839_SNP [dm6]	G	A	2.850e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9576761	2L_9576761_SNP [dm3] 2L_9576761_SNP [dm6]	G	A	2.860e^-4	0.931	START_GAINED Mtpalpha UTR_5_PRIME Mtpalpha	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7112723	2L_7112723_SNP [dm3] 2L_7112723_SNP [dm6]	A	T	2.862e^-4	0.931	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	18328716	2R_18328716_SNP [dm3] 2R_22441211_SNP [dm6]	T	A	2.864e^-4	0.931	INTERGENIC
X	20243053	X_20243053_SNP [dm3] X_20372026_SNP [dm6]	G	A	2.865e^-4	0.931	INTERGENIC
3L	13325132	3L_13325132_SNP [dm3] 3L_13332032_SNP [dm6]	A	G	2.866e^-4	0.931	INTERGENIC
3R	18867947	3R_18867947_SNP [dm3] 3R_23042225_SNP [dm6]	C	T	2.867e^-4	0.931	UPSTREAM CG13838 DOWNSTREAM CR44226 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15248172	3L_15248172_SNP [dm3] 3L_15255072_SNP [dm6]	C	T	2.877e^-4	0.931	INTERGENIC
3R	751844	3R_751844_SNP [dm3] 3R_4926122_SNP [dm6]	C	T	2.878e^-4	0.931	NON_SYNONYMOUS_CODING Cdep	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1200728	2L_1200728_SNP [dm3] 2L_1200728_SNP [dm6]	A	G	2.902e^-4	0.931	START_GAINED CG5011 UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2R	6305220	2R_6305220_SNP [dm3] 2R_10417715_SNP [dm6]	G	T	2.913e^-4	0.931	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7295073	2R_7295073_SNP [dm3] 2R_11407568_SNP [dm6]	A	G	2.913e^-4	0.931	NON_SYNONYMOUS_CODING CG7759
3R	2148209	3R_2148209_SNP [dm3] 3R_6322487_SNP [dm6]	G	A	2.921e^-4	0.931	INTRON Osi17
X	19257004	X_19257004_SNP [dm3] X_19362971_SNP [dm6]	T	C	2.925e^-4	0.931	UTR_5_PRIME kek5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22321998	3R_22321998_SNP [dm3] 3R_26496276_SNP [dm6]	C	T	2.926e^-4	0.931	INTRON plum
X	20504763	X_20504763_SNP [dm3] X_20633736_SNP [dm6]	A	C	2.929e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	19651325	3R_19651325_SNP [dm3] 3R_23825603_SNP [dm6]	A	T	2.942e^-4	0.931	UPSTREAM snRNA:U1:95Cc INTRON CG34355 EXON CR43285	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1200707	2L_1200707_SNP [dm3] 2L_1200707_SNP [dm6]	C	G	2.949e^-4	0.931	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2R	12778303	2R_12778303_SNP [dm3] 2R_16890798_SNP [dm6]	A	G	2.955e^-4	0.931	INTRON CG8910	TF binding site BDTNP1_TFBS_dl
2L	19756819	2L_19756819_SNP [dm3] 2L_19756819_SNP [dm6]	A	T	2.955e^-4	0.931	UTR_5_PRIME CG10631 DOWNSTREAM CG10628
3R	8265543	3R_8265543_SNP [dm3] 3R_12439821_SNP [dm6]	A	C	2.964e^-4	0.931	UPSTREAM CG17207 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	13101374	2L_13101374_SNP [dm3] 2L_13101374_SNP [dm6]	C	T	2.969e^-4	0.931	INTERGENIC
X	10567432	X_10567432_SNP [dm3] X_10673399_SNP [dm6]	C	A	2.972e^-4	0.931	UTR_5_PRIME CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
3R	8243520	3R_8243520_SNP [dm3] 3R_12417798_SNP [dm6]	C	T	2.978e^-4	0.931	SYNONYMOUS_CODING pps
3R	6364165	3R_6364165_SNP [dm3] 3R_10538443_SNP [dm6]	G	T	2.980e^-4	0.931	INTRON hth
3L	15249616	3L_15249616_MNP [dm3] 3L_15256516_MNP [dm6]	CAT	TTG	2.984e^-4	0.931	INTERGENIC
3L	12252021	3L_12252021_SNP [dm3] 3L_12258921_SNP [dm6]	C	T	2.984e^-4	0.931	INTRON app
2L	13100499	2L_13100499_SNP [dm3] 2L_13100499_SNP [dm6]	G	A	3.013e^-4	0.931	INTERGENIC
3L	4715234	3L_4715234_SNP [dm3] 3L_4715234_SNP [dm6]	T	C	3.019e^-4	0.931	INTRON RhoGEF64C
3R	15480370	3R_15480370_SNP [dm3] 3R_19654648_SNP [dm6]	C	T	3.024e^-4	0.931	SYNONYMOUS_CODING CG6184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18015004	2R_18015004_SNP [dm3] 2R_22127499_SNP [dm6]	A	G	3.032e^-4	0.931	UTR_5_PRIME GM130 UPSTREAM NtR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	1972359	3L_1972359_SNP [dm3] 3L_1972359_SNP [dm6]	C	T	3.043e^-4	0.931	SYNONYMOUS_CODING CG1139
3R	9621145	3R_9621145_SNP [dm3] 3R_13795423_SNP [dm6]	T	C	3.048e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10269664	2R_10269664_SNP [dm3] 2R_14382159_SNP [dm6]	C	T	3.050e^-4	0.931	INTRON Dh44-R1
3L	13251989	3L_13251989_SNP [dm3] 3L_13258889_SNP [dm6]	A	G	3.056e^-4	0.931	INTRON caps
2R	16014278	2R_16014278_SNP [dm3] 2R_20126773_SNP [dm6]	A	T	3.058e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19937617	3L_19937617_SNP [dm3] 3L_19944517_SNP [dm6]	C	T	3.060e^-4	0.931	INTRON Ac76E
2R	13578773	2R_13578773_SNP [dm3] 2R_17691268_SNP [dm6]	G	A	3.069e^-4	0.931	SYNONYMOUS_CODING swi2 DOWNSTREAM HPS4	TF binding site mE1_TFBS_cad
2R	8954760	2R_8954760_SNP [dm3] 2R_13067255_SNP [dm6]	G	A	3.076e^-4	0.931	SYNONYMOUS_CODING Drl-2	TF binding site mE1_TFBS_chinmo
3R	8214415	3R_8214415_SNP [dm3] 3R_12388693_SNP [dm6]	T	A	3.076e^-4	0.931	UTR_3_PRIME CG33098 UPSTREAM CG34402 DOWNSTREAM CG33098 INTRON CG34402
3L	15754570	3L_15754570_DEL [dm3] 3L_15761470_DEL [dm6]	ACA	A	3.078e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_cad
3R	3447933	3R_3447933_SNP [dm3] 3R_7622211_SNP [dm6]	G	C	3.094e^-4	0.931	INTRON CG34127
3R	20181094	3R_20181094_SNP [dm3] 3R_24355372_SNP [dm6]	C	T	3.103e^-4	0.931	DOWNSTREAM Golgin84 INTRON CG6454
2L	7298130	2L_7298130_SNP [dm3] 2L_7298130_SNP [dm6]	G	T	3.118e^-4	0.931	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	19460426	2R_19460426_SNP [dm3] 2R_23572903_SNP [dm6]	A	G	3.119e^-4	0.931	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Kr mE1_TFBS_Trl
2L	12568598	2L_12568598_SNP [dm3] 2L_12568598_SNP [dm6]	C	A	3.136e^-4	0.931	INTERGENIC
2L	13154214	2L_13154214_SNP [dm3] 2L_13154214_SNP [dm6]	G	T	3.141e^-4	0.931	INTERGENIC
3L	15248187	3L_15248187_SNP [dm3] 3L_15255087_SNP [dm6]	T	C	3.159e^-4	0.931	INTERGENIC
3R	7778289	3R_7778289_SNP [dm3] 3R_11952567_SNP [dm6]	T	C	3.162e^-4	0.931	INTRON CG31211	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	3984938	3R_3984938_SNP [dm3] 3R_8159216_SNP [dm6]	G	A	3.170e^-4	0.931	INTRON grn
2L	9576780	2L_9576780_SNP [dm3] 2L_9576780_SNP [dm6]	C	T	3.176e^-4	0.931	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16014300	2R_16014300_SNP [dm3] 2R_20126795_SNP [dm6]	T	A	3.176e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12938660	3R_12938660_SNP [dm3] 3R_17112938_SNP [dm6]	T	C	3.181e^-4	0.931	INTRON cher	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	15249583	3L_15249583_DEL [dm3] 3L_15256483_DEL [dm6]	TAGTA	AT	3.182e^-4	0.931	INTERGENIC
3R	8275376	3R_8275376_SNP [dm3] 3R_12449654_SNP [dm6]	C	T	3.185e^-4	0.931	SYNONYMOUS_CODING CG18549 DOWNSTREAM CG5538	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9659924	3L_9659924_SNP [dm3] 3L_9666824_SNP [dm6]	T	A	3.187e^-4	0.931	INTRON fry
2L	12226755	2L_12226755_SNP [dm3] 2L_12226755_SNP [dm6]	A	G	3.187e^-4	0.931	INTRON aret
2L	3814694	2L_3814694_SNP [dm3] 2L_3814694_SNP [dm6]	A	T	3.188e^-4	0.931	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	15249557	3L_15249557_SNP [dm3] 3L_15256457_SNP [dm6]	C	A	3.188e^-4	0.931	INTERGENIC
X	12627429	X_12627429_INS [dm3] X_12733396_INS [dm6]	A	AAA	3.199e^-4	0.931	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9477003	X_9477003_INS [dm3] X_9582970_INS [dm6]	A	ATGTA	3.208e^-4	0.931	INTERGENIC
X	11848942	X_11848942_SNP [dm3] X_11954909_SNP [dm6]	A	T	3.212e^-4	0.931	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19215740	3R_19215740_SNP [dm3] 3R_23390018_SNP [dm6]	T	C	3.222e^-4	0.931	UPSTREAM CR43387 INTERGENIC
2L	14233122	2L_14233122_SNP [dm3] 2L_14233122_SNP [dm6]	T	A	3.249e^-4	0.931	INTRON Dyrk2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1957864	3R_1957864_SNP [dm3] 3R_6132142_SNP [dm6]	T	C	3.261e^-4	0.931	INTERGENIC
X	12822391	X_12822391_SNP [dm3] X_12928358_SNP [dm6]	T	C	3.268e^-4	0.931	INTRON fne
2L	2876710	2L_2876710_SNP [dm3] 2L_2876710_SNP [dm6]	A	T	3.270e^-4	0.931	DOWNSTREAM Prx6005 INTRON CG8814
3R	10226018	3R_10226018_SNP [dm3] 3R_14400296_SNP [dm6]	T	C	3.271e^-4	0.931	INTRON cv-c	TF binding site mE1_TFBS_Trl
3R	8265539	3R_8265539_SNP [dm3] 3R_12439817_SNP [dm6]	G	T	3.274e^-4	0.931	UPSTREAM CG17207 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	25796966	3R_25796966_SNP [dm3] 3R_29971244_SNP [dm6]	A	T	3.289e^-4	0.931	INTERGENIC
3L	6490554	3L_6490554_SNP [dm3] 3L_6497454_SNP [dm6]	T	C	3.290e^-4	0.931	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1691305	2L_1691305_SNP [dm3] 2L_1691305_SNP [dm6]	A	T	3.293e^-4	0.931	INTRON chinmo
2R	13390880	2R_13390880_SNP [dm3] 2R_17503375_SNP [dm6]	G	T	3.303e^-4	0.931	INTRON CG43164	TF binding site BDTNP1_TFBS_dl
3L	17257650	3L_17257650_SNP [dm3] 3L_17264550_SNP [dm6]	C	T	3.315e^-4	0.931	SYNONYMOUS_CODING CG13723 DOWNSTREAM CR43870
3L	2171033	3L_2171033_MNP [dm3] 3L_2171033_MNP [dm6]	TAATT	ATTGA	3.318e^-4	0.931	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
3L	12705358	3L_12705358_INS [dm3] 3L_12712258_INS [dm6]	C	CACT	3.324e^-4	0.931	INTERGENIC
3R	15466104	3R_15466104_SNP [dm3] 3R_19640382_SNP [dm6]	T	G	3.336e^-4	0.931	INTRON subdued
2L	9576758	2L_9576758_SNP [dm3] 2L_9576758_SNP [dm6]	T	C	3.352e^-4	0.931	UTR_5_PRIME Mtpalpha	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3L	11039205	3L_11039205_SNP [dm3] 3L_11046105_SNP [dm6]	C	A	3.353e^-4	0.931	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23621184	3R_23621184_SNP [dm3] 3R_27795462_SNP [dm6]	A	T	3.362e^-4	0.931	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3R	8212109	3R_8212109_SNP [dm3] 3R_12386387_SNP [dm6]	T	C	3.362e^-4	0.931	NON_SYNONYMOUS_CODING CG34402 UPSTREAM CG33098 DOWNSTREAM GstD11	TF binding site mE1_TFBS_chinmo
3R	1755865	3R_1755865_SNP [dm3] 3R_5930143_SNP [dm6]	C	T	3.365e^-4	0.931	INTRON CG34113
3L	1272479	3L_1272479_INS [dm3] 3L_1272479_INS [dm6]	T	TT	3.365e^-4	0.931	INTRON CG9134	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9659933	3L_9659933_SNP [dm3] 3L_9666833_SNP [dm6]	C	A	3.368e^-4	0.931	INTRON fry
3R	25809430	3R_25809430_SNP [dm3] 3R_29983708_SNP [dm6]	A	G	3.372e^-4	0.931	UTR_5_PRIME CG7896	TF binding site mE1_TFBS_Trl
X	8435407	X_8435407_SNP [dm3] X_8541374_SNP [dm6]	T	A	3.390e^-4	0.931	INTRON Nrg
3R	25044700	3R_25044700_SNP [dm3] 3R_29218978_SNP [dm6]	C	A	3.390e^-4	0.931	EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9598193	3L_9598193_SNP [dm3] 3L_9605093_SNP [dm6]	T	G	3.395e^-4	0.931	INTRON CG3280
2R	18614986	2R_18614986_SNP [dm3] 2R_22727481_SNP [dm6]	A	C	3.395e^-4	0.931	INTRON jbug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	18003052	3L_18003052_SNP [dm3] 3L_18009952_SNP [dm6]	G	T	3.397e^-4	0.931	INTRON Eip75B
2R	18349556	2R_18349556_SNP [dm3] 2R_22462051_SNP [dm6]	C	T	3.398e^-4	0.931	INTRON CG10384
2R	12458947	2R_12458947_INS [dm3] 2R_16571442_INS [dm6]	C	TTTGTG	3.400e^-4	0.931	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	13132490	X_13132490_DEL [dm3] X_13238457_DEL [dm6]	CACCC	C	3.405e^-4	0.931	INTRON mew	TF binding site BDTNP1_TFBS_dl
2L	3677671	2L_3677671_SNP [dm3] 2L_3677671_SNP [dm6]	G	T	3.407e^-4	0.931	INTRON CG34340
3R	8179482	3R_8179482_DEL [dm3] 3R_12353760_DEL [dm6]	TGGCCGT	T	3.408e^-4	0.931	CODON_DELETION MBD-R2
3L	19769758	3L_19769758_INS [dm3] 3L_19776658_INS [dm6]	T	TC	3.412e^-4	0.931	INTRON CG42637 & 1 other
2R	19123769	2R_19123769_SNP [dm3] 2R_23236246_SNP [dm6]	A	G	3.420e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16996221	2R_16996221_SNP [dm3] 2R_21108716_SNP [dm6]	C	T	3.420e^-4	0.931	INTRON ktub
3L	571997	3L_571997_SNP [dm3] 3L_571997_SNP [dm6]	G	A	3.423e^-4	0.931	INTRON hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18614987	2R_18614987_SNP [dm3] 2R_22727482_SNP [dm6]	G	A	3.423e^-4	0.931	INTRON jbug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14662687	2R_14662687_SNP [dm3] 2R_18775182_SNP [dm6]	T	C	3.424e^-4	0.931	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11045440	3L_11045440_SNP [dm3] 3L_11052340_SNP [dm6]	C	A	3.435e^-4	0.931	UPSTREAM CG43693 INTERGENIC
2R	10321097	2R_10321097_SNP [dm3] 2R_14433592_SNP [dm6]	T	C	3.439e^-4	0.931	EXON CR45277	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14514811	2R_14514811_SNP [dm3] 2R_18627306_SNP [dm6]	G	A	3.444e^-4	0.931	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	15684926	3L_15684926_SNP [dm3] 3L_15691826_SNP [dm6]	G	A	3.451e^-4	0.931	SYNONYMOUS_CODING CG34451 UTR_5_PRIME CG34451	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3943565	3L_3943565_SNP [dm3] 3L_3943565_SNP [dm6]	A	G	3.452e^-4	0.931	UTR_5_PRIME CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	20848788	3R_20848788_SNP [dm3] 3R_25023066_SNP [dm6]	G	T	3.452e^-4	0.931	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	15482172	3R_15482172_SNP [dm3] 3R_19656450_SNP [dm6]	T	C	3.453e^-4	0.931	UTR_5_PRIME CG6184 INTRON CG6184	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	20552182	3R_20552182_SNP [dm3] 3R_24726460_SNP [dm6]	G	A	3.462e^-4	0.931	INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16140581	2R_16140581_INS [dm3] 2R_20253076_INS [dm6]	A	AA	3.470e^-4	0.931	INTRON CG9864
X	4878193	X_4878193_SNP [dm3] X_4984160_SNP [dm6]	T	C	3.474e^-4	0.931	INTRON CR44833	regulatory region REDfly_CRMs
2L	7428241	2L_7428241_SNP [dm3] 2L_7428241_SNP [dm6]	T	C	3.476e^-4	0.931	INTRON CG5261
3R	2142037	3R_2142037_SNP [dm3] 3R_6316315_SNP [dm6]	T	C	3.482e^-4	0.931	SYNONYMOUS_CODING Osi17
3R	2154002	3R_2154002_SNP [dm3] 3R_6328280_SNP [dm6]	T	C	3.482e^-4	0.931	DOWNSTREAM Osi17 INTERGENIC
3R	11980357	3R_11980357_SNP [dm3] 3R_16154635_SNP [dm6]	A	T	3.486e^-4	0.931	UPSTREAM CG6006 INTERGENIC
X	11573356	X_11573356_SNP [dm3] X_11679323_SNP [dm6]	C	G	3.492e^-4	0.931	UPSTREAM CG2371 INTRON bif	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	22327841	3R_22327841_INS [dm3] 3R_26502119_INS [dm6]	C	CAAC	3.518e^-4	0.931	INTRON plum
2R	13345018	2R_13345018_SNP [dm3] 2R_17457513_SNP [dm6]	C	T	3.518e^-4	0.931	UPSTREAM CG14478 DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
3R	27407992	3R_27407992_SNP [dm3] 3R_31582270_SNP [dm6]	G	A	3.519e^-4	0.931	INTRON rod	TF binding site mE1_TFBS_sens
2L	15077112	2L_15077112_SNP [dm3] 2L_15077112_SNP [dm6]	G	T	3.529e^-4	0.931	INTRON CG15270
2L	1647694	2L_1647694_SNP [dm3] 2L_1647694_SNP [dm6]	C	T	3.532e^-4	0.931	UPSTREAM CR45695 INTERGENIC
3R	1811794	3R_1811794_SNP [dm3] 3R_5986072_SNP [dm6]	T	G	3.532e^-4	0.931	INTERGENIC
X	9753967	X_9753967_SNP [dm3] X_9859934_SNP [dm6]	G	C	3.535e^-4	0.931	INTERGENIC
X	10772035	X_10772035_SNP [dm3] X_10878002_SNP [dm6]	T	C	3.536e^-4	0.931	UPSTREAM CG1637 DOWNSTREAM Ork1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	10361335	3L_10361335_SNP [dm3] 3L_10368235_SNP [dm6]	T	C	3.545e^-4	0.931	DOWNSTREAM CR44327 INTERGENIC
2R	13390935	2R_13390935_DEL [dm3] 2R_17503430_DEL [dm6]	ACGGAA	C	3.546e^-4	0.931	INTRON CG43164	TF binding site BDTNP1_TFBS_dl
3L	3444082	3L_3444082_SNP [dm3] 3L_3444082_SNP [dm6]	A	G	3.548e^-4	0.931	INTRON eIF5B
3L	10812279	3L_10812279_SNP [dm3] 3L_10819179_SNP [dm6]	G	A	3.549e^-4	0.931	INTERGENIC
3R	2799335	3R_2799335_SNP [dm3] 3R_6973613_SNP [dm6]	G	A	3.557e^-4	0.931	INTRON Antp	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	13038947	3R_13038947_DEL [dm3] 3R_17213225_DEL [dm6]	TGTT	T	3.561e^-4	0.931	INTERGENIC
3R	9499398	3R_9499398_SNP [dm3] 3R_13673676_SNP [dm6]	A	G	3.561e^-4	0.931	UTR_5_PRIME Task6 INTRON Task6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	12659725	3R_12659725_SNP [dm3] 3R_16834003_SNP [dm6]	C	A	3.564e^-4	0.931	DOWNSTREAM iab-8 INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	12452435	X_12452435_SNP [dm3] X_12558402_SNP [dm6]	G	T	3.566e^-4	0.931	INTRON CG43921
3R	25675208	3R_25675208_SNP [dm3] 3R_29849486_SNP [dm6]	T	A	3.568e^-4	0.931	INTRON Cad99C	TF binding site mE1_TFBS_cad
X	12372217	X_12372217_SNP [dm3] X_12478184_SNP [dm6]	C	T	3.581e^-4	0.931	UTR_3_PRIME CG42258 DOWNSTREAM CG42258
X	10568569	X_10568569_SNP [dm3] X_10674536_SNP [dm6]	G	C	3.589e^-4	0.931	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
3R	7731455	3R_7731455_SNP [dm3] 3R_11905733_SNP [dm6]	A	G	3.593e^-4	0.931	INTRON Cad87A
3L	7222963	3L_7222963_SNP [dm3] 3L_7229863_SNP [dm6]	T	C	3.600e^-4	0.931	INTERGENIC
3R	20428345	3R_20428345_SNP [dm3] 3R_24602623_SNP [dm6]	G	A	3.607e^-4	0.931	INTRON mld
2R	13340579	2R_13340579_DEL [dm3] 2R_17453074_DEL [dm6]	TATCACATA	G	3.611e^-4	0.931	UPSTREAM CG10764 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18011254	2R_18011254_SNP [dm3] 2R_22123749_SNP [dm6]	T	G	3.618e^-4	0.931	NON_SYNONYMOUS_CODING mei-S332 DOWNSTREAM GM130	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	9476412	X_9476412_SNP [dm3] X_9582379_SNP [dm6]	T	A	3.620e^-4	0.931	UPSTREAM CR45540 INTERGENIC
3R	15480037	3R_15480037_SNP [dm3] 3R_19654315_SNP [dm6]	C	T	3.627e^-4	0.931	SYNONYMOUS_CODING CG6184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18645916	3L_18645916_SNP [dm3] 3L_18652816_SNP [dm6]	T	A	3.639e^-4	0.931	INTRON MYPT-75D
3R	13923086	3R_13923086_SNP [dm3] 3R_18097364_SNP [dm6]	C	T	3.641e^-4	0.931	INTRON sr
3R	5082413	3R_5082413_SNP [dm3] 3R_9256691_SNP [dm6]	G	A	3.642e^-4	0.931	SYNONYMOUS_CODING CG16734 UTR_3_PRIME CG16736	TF binding site mE1_TFBS_sens
2L	6361807	2L_6361807_SNP [dm3] 2L_6361807_SNP [dm6]	T	A	3.648e^-4	0.931	DOWNSTREAM CR44778 INTERGENIC
3L	18831267	3L_18831267_SNP [dm3] 3L_18838167_SNP [dm6]	G	C	3.650e^-4	0.931	INTRON Indy	TF binding site mE1_TFBS_zfh1
X	12452583	X_12452583_SNP [dm3] X_12558550_SNP [dm6]	A	C	3.659e^-4	0.931	INTRON CG43921
3L	16822793	3L_16822793_DEL [dm3] 3L_16829693_DEL [dm6]	AA	A	3.662e^-4	0.931	UPSTREAM CG13024 INTERGENIC
3L	18603532	3L_18603532_SNP [dm3] 3L_18610432_SNP [dm6]	G	T	3.680e^-4	0.931	DOWNSTREAM CG18231 INTRON CG4174 & 2 others
3L	3709625	3L_3709625_SNP [dm3] 3L_3709625_SNP [dm6]	T	C	3.680e^-4	0.931	DOWNSTREAM CR45675 INTERGENIC
3L	17181050	3L_17181050_SNP [dm3] 3L_17187950_SNP [dm6]	G	A	3.684e^-4	0.931	INTRON Rbp6
X	19777515	X_19777515_DEL [dm3] X_19883482_DEL [dm6]	GGGATATACCATACCAGTGG...	G	3.688e^-4	0.931	INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17842095	X_17842095_SNP [dm3] X_17948062_SNP [dm6]	G	A	3.688e^-4	0.931	UTR_3_PRIME Sh INTRON Sh
X	12161470	X_12161470_SNP [dm3] X_12267437_SNP [dm6]	G	A	3.692e^-4	0.931	INTRON Ten-a
3L	18604808	3L_18604808_SNP [dm3] 3L_18611708_SNP [dm6]	A	G	3.693e^-4	0.931	UTR_3_PRIME CG32201 UPSTREAM CG32199 INTRON CG4174 & 1 other
3R	15982085	3R_15982085_SNP [dm3] 3R_20156363_SNP [dm6]	T	C	3.695e^-4	0.931	INTERGENIC
2L	4194436	2L_4194436_SNP [dm3] 2L_4194436_SNP [dm6]	T	G	3.696e^-4	0.931	INTRON CG3714
3R	25531107	3R_25531107_SNP [dm3] 3R_29705385_SNP [dm6]	T	C	3.698e^-4	0.931	INTERGENIC
2R	18013446	2R_18013446_SNP [dm3] 2R_22125941_SNP [dm6]	C	T	3.717e^-4	0.931	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8358365	3R_8358365_SNP [dm3] 3R_12532643_SNP [dm6]	G	C	3.719e^-4	0.931	INTRON Octbeta3R
X	17542673	X_17542673_SNP [dm3] X_17648640_SNP [dm6]	T	C	3.719e^-4	0.931	SYNONYMOUS_CODING RhoGAPp190	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9497218	3L_9497218_SNP [dm3] 3L_9504118_SNP [dm6]	A	G	3.722e^-4	0.931	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11039144	3L_11039144_SNP [dm3] 3L_11046044_SNP [dm6]	T	C	3.727e^-4	0.931	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	17106045	2L_17106045_SNP [dm3] 2L_17106045_SNP [dm6]	A	G	3.741e^-4	0.931	DOWNSTREAM CR45448 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10119268	3R_10119268_SNP [dm3] 3R_14293546_SNP [dm6]	G	C	3.741e^-4	0.931	INTRON CG12207
2R	13004415	2R_13004415_SNP [dm3] 2R_17116910_SNP [dm6]	C	T	3.743e^-4	0.931	INTERGENIC
3R	4885793	3R_4885793_SNP [dm3] 3R_9060071_SNP [dm6]	C	T	3.743e^-4	0.931	SYNONYMOUS_CODING Kdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9986173	3R_9986173_SNP [dm3] 3R_14160451_SNP [dm6]	A	G	3.750e^-4	0.931	UPSTREAM CG31327 INTERGENIC
X	14419019	X_14419019_SNP [dm3] X_14524986_SNP [dm6]	A	T	3.752e^-4	0.931	INTERGENIC
X	3631503	X_3631503_SNP [dm3] X_3737470_SNP [dm6]	G	C	3.761e^-4	0.931	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14363647	2L_14363647_SNP [dm3] 2L_14363647_SNP [dm6]	A	G	3.764e^-4	0.931	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12751154	3L_12751154_SNP [dm3] 3L_12758054_SNP [dm6]	A	C	3.764e^-4	0.931	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8279286	3R_8279286_SNP [dm3] 3R_12453564_SNP [dm6]	T	C	3.771e^-4	0.931	DOWNSTREAM CG5509 INTRON CG18549	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	14419018	X_14419018_SNP [dm3] X_14524985_SNP [dm6]	C	T	3.775e^-4	0.931	INTERGENIC
2L	12226786	2L_12226786_SNP [dm3] 2L_12226786_SNP [dm6]	T	C	3.784e^-4	0.931	INTRON aret
3R	8237112	3R_8237112_SNP [dm3] 3R_12411390_SNP [dm6]	C	A	3.789e^-4	0.931	NON_SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10513270	2L_10513270_SNP [dm3] 2L_10513270_SNP [dm6]	C	T	3.790e^-4	0.931	SYNONYMOUS_CODING Fatp UTR_3_PRIME CG45083	TF binding site mE1_TFBS_cad
3R	24350137	3R_24350137_SNP [dm3] 3R_28524415_SNP [dm6]	C	T	3.799e^-4	0.931	SYNONYMOUS_CODING Ppn INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22580970	3L_22580970_SNP [dm3] 3L_22587870_SNP [dm6]	A	C	3.804e^-4	0.931	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	14228146	2R_14228146_SNP [dm3] 2R_18340641_SNP [dm6]	G	A	3.805e^-4	0.931	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6944180	3L_6944180_SNP [dm3] 3L_6951080_SNP [dm6]	A	G	3.811e^-4	0.931	SYNONYMOUS_CODING CG10077 DOWNSTREAM CG10077	TF binding site mE1_TFBS_inv
3R	17908276	3R_17908276_SNP [dm3] 3R_22082554_SNP [dm6]	C	T	3.830e^-4	0.931	INTRON CG13408
2R	10892704	2R_10892704_INS [dm3] 2R_15005199_INS [dm6]	A	ACT	3.850e^-4	0.931	INTERGENIC
2L	2707543	2L_2707543_SNP [dm3] 2L_2707543_SNP [dm6]	C	A	3.853e^-4	0.931	INTRON CG31690
3L	13117506	3L_13117506_SNP [dm3] 3L_13124406_SNP [dm6]	C	T	3.855e^-4	0.931	INTERGENIC
3R	18839518	3R_18839518_INS [dm3] 3R_23013796_INS [dm6]	C	TCAAATG	3.879e^-4	0.931	INTRON CG6688	TF binding site mE1_TFBS_zfh1
3R	18839521	3R_18839521_SNP [dm3] 3R_23013799_SNP [dm6]	G	A	3.879e^-4	0.931	INTRON CG6688	TF binding site mE1_TFBS_zfh1
3R	18839527	3R_18839527_SNP [dm3] 3R_23013805_SNP [dm6]	C	T	3.879e^-4	0.931	INTRON CG6688	TF binding site mE1_TFBS_zfh1
3R	18839540	3R_18839540_SNP [dm3] 3R_23013818_SNP [dm6]	T	G	3.879e^-4	0.931	INTRON CG6688	TF binding site mE1_TFBS_zfh1
2R	12687493	2R_12687493_MNP [dm3] 2R_16799988_MNP [dm6]	CGC	TTA	3.879e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	5568953	3L_5568953_DEL [dm3] 3L_5575853_DEL [dm6]	CGC	C	3.888e^-4	0.931	UPSTREAM Msr-110 INTRON Msr-110
3R	25797509	3R_25797509_SNP [dm3] 3R_29971787_SNP [dm6]	T	C	3.900e^-4	0.931	INTERGENIC
3L	5935149	3L_5935149_SNP [dm3] 3L_5942049_SNP [dm6]	T	A	3.901e^-4	0.931	INTRON CG33993
3R	17882913	3R_17882913_SNP [dm3] 3R_22057191_SNP [dm6]	A	G	3.903e^-4	0.931	INTRON how
2R	13449183	2R_13449183_SNP [dm3] 2R_17561678_SNP [dm6]	C	A	3.904e^-4	0.931	INTRON Klp54D
3R	1944093	3R_1944093_SNP [dm3] 3R_6118371_SNP [dm6]	T	C	3.905e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9395745	3L_9395745_SNP [dm3] 3L_9402645_SNP [dm6]	G	T	3.914e^-4	0.931	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	18609529	2L_18609529_SNP [dm3] 2L_18609529_SNP [dm6]	A	G	3.922e^-4	0.931	UTR_3_PRIME CG10333 DOWNSTREAM Atac2
2L	10103125	2L_10103125_SNP [dm3] 2L_10103125_SNP [dm6]	C	T	3.923e^-4	0.931	INTRON CG44153 & 1 other
X	21099460	X_21099460_DEL [dm3] X_21228433_DEL [dm6]	GCGATGG	G	3.926e^-4	0.931	INTRON CG32521
2L	10701038	2L_10701038_SNP [dm3] 2L_10701038_SNP [dm6]	T	G	3.928e^-4	0.931	DOWNSTREAM Lip2 INTRON Lip1	TF binding site mE1_TFBS_cad
2L	14367893	2L_14367893_SNP [dm3] 2L_14367893_SNP [dm6]	T	A	3.931e^-4	0.931	INTERGENIC
2R	14514328	2R_14514328_SNP [dm3] 2R_18626823_SNP [dm6]	G	A	3.940e^-4	0.931	SYNONYMOUS_CODING Sec6	TF binding site mE1_TFBS_sens
2R	14514457	2R_14514457_SNP [dm3] 2R_18626952_SNP [dm6]	A	G	3.940e^-4	0.931	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site mE1_TFBS_sens
2R	14514469	2R_14514469_SNP [dm3] 2R_18626964_SNP [dm6]	T	C	3.940e^-4	0.931	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site mE1_TFBS_sens
3L	973451	3L_973451_SNP [dm3] 3L_973451_SNP [dm6]	C	T	3.942e^-4	0.931	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10659326	3R_10659326_SNP [dm3] 3R_14833604_SNP [dm6]	C	A	3.943e^-4	0.931	INTRON btsz
2R	8954212	2R_8954212_SNP [dm3] 2R_13066707_SNP [dm6]	T	C	3.946e^-4	0.931	INTRON Drl-2
3R	810769	3R_810769_SNP [dm3] 3R_4985047_SNP [dm6]	C	T	3.957e^-4	0.931	UPSTREAM CG14662 EXON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	9510692	X_9510692_SNP [dm3] X_9616659_SNP [dm6]	C	A	3.959e^-4	0.931	INTRON CG42797
3R	1329415	3R_1329415_SNP [dm3] 3R_5503693_SNP [dm6]	G	C	3.971e^-4	0.931	UPSTREAM CG31547 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10740560	2R_10740560_SNP [dm3] 2R_14853055_SNP [dm6]	G	T	3.977e^-4	0.931	NON_SYNONYMOUS_CODING Ercc1 UPSTREAM SMC2 DOWNSTREAM Ciao1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	13028154	2R_13028154_DEL [dm3] 2R_17140649_DEL [dm6]	GCTCGCAATTGTT...	G	3.980e^-4	0.931	UPSTREAM CG43103 EXON CR44386
3R	8242525	3R_8242525_SNP [dm3] 3R_12416803_SNP [dm6]	C	T	3.981e^-4	0.931	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12034680	2L_12034680_SNP [dm3] 2L_12034680_SNP [dm6]	A	C	3.983e^-4	0.931	NON_SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut	TF binding site mE1_TFBS_chinmo
3L	6285606	3L_6285606_SNP [dm3] 3L_6292506_SNP [dm6]	A	T	3.997e^-4	0.931	INTERGENIC
2R	9968568	2R_9968568_SNP [dm3] 2R_14081063_SNP [dm6]	C	G	3.998e^-4	0.931	INTRON Prosap
2R	19343780	2R_19343780_INS [dm3] 2R_23456257_INS [dm6]	C	CATC	4.000e^-4	0.931	UTR_5_PRIME CG43795	TF binding site mE1_TFBS_chinmo
2R	12687497	2R_12687497_SNP [dm3] 2R_16799992_SNP [dm6]	T	A	4.001e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	7557893	2R_7557893_SNP [dm3] 2R_11670388_SNP [dm6]	G	T	4.004e^-4	0.931	INTRON Roc2 & 1 other
3R	17062951	3R_17062951_SNP [dm3] 3R_21237229_SNP [dm6]	G	T	4.008e^-4	0.931	UPSTREAM e INTERGENIC
2R	16014346	2R_16014346_SNP [dm3] 2R_20126841_SNP [dm6]	C	T	4.012e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1258824	3L_1258824_SNP [dm3] 3L_1258824_SNP [dm6]	G	A	4.015e^-4	0.931	INTRON CG9134
X	17033887	X_17033887_SNP [dm3] X_17139854_SNP [dm6]	T	C	4.022e^-4	0.931	NON_SYNONYMOUS_CODING mei-218 UTR_3_PRIME mei-217
2L	3396448	2L_3396448_SNP [dm3] 2L_3396448_SNP [dm6]	A	G	4.025e^-4	0.931	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6079982	3L_6079982_SNP [dm3] 3L_6086882_SNP [dm6]	C	A	4.032e^-4	0.931	INTRON CG13293
3R	7405080	3R_7405080_SNP [dm3] 3R_11579358_SNP [dm6]	A	T	4.033e^-4	0.931	NON_SYNONYMOUS_CODING CG5342 UPSTREAM CG6790
3R	12630642	3R_12630642_SNP [dm3] 3R_16804920_SNP [dm6]	T	C	4.049e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5344386	3L_5344386_SNP [dm3] 3L_5351286_SNP [dm6]	A	T	4.055e^-4	0.931	INTRON lama
2L	5034651	2L_5034651_SNP [dm3] 2L_5034651_SNP [dm6]	G	A	4.059e^-4	0.931	NON_SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18367064	2R_18367064_SNP [dm3] 2R_22479559_SNP [dm6]	G	T	4.060e^-4	0.931	INTRON CG4752
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	4.062e^-4	0.931	INTRON CR44941
3R	8067720	3R_8067720_SNP [dm3] 3R_12241998_SNP [dm6]	C	A	4.086e^-4	0.931	INTERGENIC
3L	6659999	3L_6659999_SNP [dm3] 3L_6666899_SNP [dm6]	C	T	4.089e^-4	0.931	SYNONYMOUS_CODING CG32395 UPSTREAM CR45173
2R	6083877	2R_6083877_SNP [dm3] 2R_10196372_SNP [dm6]	A	G	4.091e^-4	0.931	DOWNSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	13255579	3L_13255579_SNP [dm3] 3L_13262479_SNP [dm6]	A	T	4.094e^-4	0.931	INTRON caps
2L	8362750	2L_8362750_SNP [dm3] 2L_8362750_SNP [dm6]	T	C	4.103e^-4	0.931	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	6570959	3L_6570959_SNP [dm3] 3L_6577859_SNP [dm6]	G	C	4.112e^-4	0.931	INTRON CG18769 & 1 other
3R	7768481	3R_7768481_SNP [dm3] 3R_11942759_SNP [dm6]	G	A	4.113e^-4	0.931	INTRON Cad87A
2L	5483007	2L_5483007_SNP [dm3] 2L_5483007_SNP [dm6]	A	G	4.113e^-4	0.931	INTERGENIC
2L	2877242	2L_2877242_SNP [dm3] 2L_2877242_SNP [dm6]	T	C	4.113e^-4	0.931	SYNONYMOUS_CODING Prx6005 DOWNSTREAM CG8814
X	4119446	X_4119446_SNP [dm3] X_4225413_SNP [dm6]	A	C	4.113e^-4	0.931	INTERGENIC
3L	2186446	3L_2186446_INS [dm3] 3L_2186446_INS [dm6]	A	AA	4.120e^-4	0.931	INTRON CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17908167	3R_17908167_SNP [dm3] 3R_22082445_SNP [dm6]	G	C	4.122e^-4	0.931	INTRON CG13408
2L	4896786	2L_4896786_SNP [dm3] 2L_4896786_SNP [dm6]	C	T	4.133e^-4	0.931	INTRON CG3036
2L	15104877	2L_15104877_SNP [dm3] 2L_15104877_SNP [dm6]	C	T	4.146e^-4	0.931	INTERGENIC
2L	739068	2L_739068_SNP [dm3] 2L_739068_SNP [dm6]	A	T	4.164e^-4	0.931	INTRON Eaat2
2R	503811	2R_503811_SNP [dm3] 2R_4616306_SNP [dm6]	C	G	4.168e^-4	0.931	INTERGENIC	transposable element FlyBase
2R	12772594	2R_12772594_SNP [dm3] 2R_16885089_SNP [dm6]	G	A	4.169e^-4	0.931	DOWNSTREAM CG6472 INTRON CG8910
3L	2274149	3L_2274149_SNP [dm3] 3L_2274149_SNP [dm6]	G	A	4.172e^-4	0.931	DOWNSTREAM tRNA:CR32303 INTERGENIC
3L	5332968	3L_5332968_SNP [dm3] 3L_5339868_SNP [dm6]	A	T	4.172e^-4	0.931	INTERGENIC
2R	11616233	2R_11616233_SNP [dm3] 2R_15728728_SNP [dm6]	C	A	4.179e^-4	0.931	INTRON CG30089
2L	1200706	2L_1200706_SNP [dm3] 2L_1200706_SNP [dm6]	C	G	4.185e^-4	0.931	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
3L	9545449	3L_9545449_INS [dm3] 3L_9552349_INS [dm6]	T	TATTCA	4.191e^-4	0.931	INTRON CG42673
3R	7049882	3R_7049882_SNP [dm3] 3R_11224160_SNP [dm6]	T	G	4.194e^-4	0.931	SYNONYMOUS_CODING RpL3 UTR_3_PRIME RpL3 UPSTREAM snoRNA:Me28S-G2017 DOWNSTREAM snoRNA:Psi28S-291	TF binding site mE1_TFBS_sens
3L	13828082	3L_13828082_SNP [dm3] 3L_13834982_SNP [dm6]	T	C	4.216e^-4	0.931	INTERGENIC
2L	8362644	2L_8362644_SNP [dm3] 2L_8362644_SNP [dm6]	T	C	4.222e^-4	0.931	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	27417483	3R_27417483_SNP [dm3] 3R_31591761_SNP [dm6]	T	G	4.224e^-4	0.931	SYNONYMOUS_CODING CG1638	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3504863	3R_3504863_SNP [dm3] 3R_7679141_SNP [dm6]	T	G	4.225e^-4	0.931	INTRON Nlg1
X	6195847	X_6195847_SNP [dm3] X_6301814_SNP [dm6]	C	T	4.225e^-4	0.931	UPSTREAM CG12219 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3L	14968091	3L_14968091_SNP [dm3] 3L_14974991_SNP [dm6]	G	A	4.232e^-4	0.931	UTR_5_PRIME Ocho UPSTREAM Ocho	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17908266	3R_17908266_SNP [dm3] 3R_22082544_SNP [dm6]	A	T	4.234e^-4	0.931	INTRON CG13408
2R	16043604	2R_16043604_SNP [dm3] 2R_20156099_SNP [dm6]	A	T	4.241e^-4	0.931	INTERGENIC
2R	14662621	2R_14662621_SNP [dm3] 2R_18775116_SNP [dm6]	G	A	4.242e^-4	0.931	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2R	12475964	2R_12475964_SNP [dm3] 2R_16588459_SNP [dm6]	C	T	4.247e^-4	0.931	SYNONYMOUS_CODING CG8311	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5510037	3L_5510037_SNP [dm3] 3L_5516937_SNP [dm6]	C	T	4.252e^-4	0.931	INTRON Lkr
2R	3475863	2R_3475863_SNP [dm3] 2R_7588358_SNP [dm6]	G	A	4.252e^-4	0.931	UTR_3_PRIME CG1360	TF binding site mE1_TFBS_cad
3R	8083447	3R_8083447_SNP [dm3] 3R_12257725_SNP [dm6]	T	C	4.253e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	2876713	2L_2876713_SNP [dm3] 2L_2876713_SNP [dm6]	G	T	4.254e^-4	0.931	DOWNSTREAM Prx6005 INTRON CG8814
2L	10008502	2L_10008502_SNP [dm3] 2L_10008502_SNP [dm6]	A	C	4.262e^-4	0.931	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
3R	1898927	3R_1898927_SNP [dm3] 3R_6073205_SNP [dm6]	T	G	4.270e^-4	0.931	INTERGENIC
3L	909349	3L_909349_SNP [dm3] 3L_909349_SNP [dm6]	G	A	4.271e^-4	0.931	NON_SYNONYMOUS_CODING nerfin-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20848783	3R_20848783_SNP [dm3] 3R_25023061_SNP [dm6]	A	T	4.282e^-4	0.931	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3L	9395698	3L_9395698_SNP [dm3] 3L_9402598_SNP [dm6]	T	G	4.288e^-4	0.931	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4045845	2L_4045845_SNP [dm3] 2L_4045845_SNP [dm6]	T	A	4.289e^-4	0.931	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14664147	2R_14664147_SNP [dm3] 2R_18776642_SNP [dm6]	C	T	4.294e^-4	0.931	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1200697	2L_1200697_INS [dm3] 2L_1200697_INS [dm6]	A	AGCGTCCATTA...	4.299e^-4	0.931	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2R	18260070	2R_18260070_SNP [dm3] 2R_22372565_SNP [dm6]	T	C	4.300e^-4	0.931	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
3R	14156422	3R_14156422_SNP [dm3] 3R_18330700_SNP [dm6]	G	C	4.300e^-4	0.931	DOWNSTREAM CG15803 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	19757254	2L_19757254_SNP [dm3] 2L_19757254_SNP [dm6]	C	T	4.301e^-4	0.931	UTR_3_PRIME CG10628 UPSTREAM CG10631
2R	9128370	2R_9128370_SNP [dm3] 2R_13240865_SNP [dm6]	T	C	4.313e^-4	0.931	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12465660	2R_12465660_SNP [dm3] 2R_16578155_SNP [dm6]	G	A	4.314e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	13121792	3L_13121792_SNP [dm3] 3L_13128692_SNP [dm6]	A	G	4.318e^-4	0.931	INTERGENIC
2L	19129957	2L_19129957_SNP [dm3] 2L_19129957_SNP [dm6]	T	C	4.325e^-4	0.931	UTR_3_PRIME Aats-asn DOWNSTREAM l_2_37Cd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2226649	3R_2226649_SNP [dm3] 3R_6400927_SNP [dm6]	T	C	4.335e^-4	0.931	INTRON Dmtn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14865403	2L_14865403_SNP [dm3] 2L_14865403_SNP [dm6]	C	A	4.344e^-4	0.931	INTERGENIC
3R	14156460	3R_14156460_SNP [dm3] 3R_18330738_SNP [dm6]	A	C	4.354e^-4	0.931	DOWNSTREAM CG15803 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	7557879	2R_7557879_SNP [dm3] 2R_11670374_SNP [dm6]	C	T	4.358e^-4	0.931	INTRON Roc2 & 1 other
3R	18705662	3R_18705662_SNP [dm3] 3R_22879940_SNP [dm6]	A	G	4.365e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1548850	3L_1548850_SNP [dm3] 3L_1548850_SNP [dm6]	A	G	4.367e^-4	0.931	INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8233374	3R_8233374_SNP [dm3] 3R_12407652_SNP [dm6]	C	G	4.368e^-4	0.931	NON_SYNONYMOUS_CODING CG5167 UPSTREAM CG5196	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16750762	3L_16750762_DEL [dm3] 3L_16757662_DEL [dm6]	GATT	G	4.373e^-4	0.931	INTERGENIC
3R	17908275	3R_17908275_SNP [dm3] 3R_22082553_SNP [dm6]	C	T	4.374e^-4	0.931	INTRON CG13408
2R	11707578	2R_11707578_SNP [dm3] 2R_15820073_SNP [dm6]	G	A	4.375e^-4	0.931	SYNONYMOUS_CODING CG33465 INTRON tun
3R	15466208	3R_15466208_SNP [dm3] 3R_19640486_SNP [dm6]	A	T	4.384e^-4	0.931	INTRON subdued
3R	13164245	3R_13164245_SNP [dm3] 3R_17338523_SNP [dm6]	G	T	4.389e^-4	0.931	INTRON beat-IIa
3R	3473014	3R_3473014_SNP [dm3] 3R_7647292_SNP [dm6]	C	T	4.393e^-4	0.931	INTERGENIC
2L	16603897	2L_16603897_SNP [dm3] 2L_16603897_SNP [dm6]	C	T	4.407e^-4	0.931	UTR_5_PRIME CG42389 INTRON CG42389
3R	24632698	3R_24632698_SNP [dm3] 3R_28806976_SNP [dm6]	T	C	4.411e^-4	0.931	INTRON CheB98a
3R	9621282	3R_9621282_SNP [dm3] 3R_13795560_SNP [dm6]	T	G	4.416e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	1405717	3R_1405717_SNP [dm3] 3R_5579995_SNP [dm6]	G	T	4.416e^-4	0.931	UTR_3_PRIME CG2926 DOWNSTREAM CRMP	TF binding site mE1_TFBS_kn
2R	15070575	2R_15070575_SNP [dm3] 2R_19183070_SNP [dm6]	A	T	4.417e^-4	0.931	INTRON hppy
3R	4859257	3R_4859257_DEL [dm3] 3R_9033535_DEL [dm6]	CTGCT	C	4.420e^-4	0.931	UTR_5_PRIME neur INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	1352568	3R_1352568_SNP [dm3] 3R_5526846_SNP [dm6]	T	G	4.421e^-4	0.931	INTRON Itp-r83A
X	2608246	X_2608246_SNP [dm3] X_2714213_SNP [dm6]	A	C	4.426e^-4	0.931	SYNONYMOUS_CODING CG2694 UTR_5_PRIME CG2694 UPSTREAM CG2685 INTRON CG2694	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	3455865	3R_3455865_SNP [dm3] 3R_7630143_SNP [dm6]	G	A	4.426e^-4	0.931	INTRON CG34127	TF binding site mE1_TFBS_inv
3R	13040167	3R_13040167_SNP [dm3] 3R_17214445_SNP [dm6]	A	G	4.427e^-4	0.931	INTERGENIC
3R	13139415	3R_13139415_SNP [dm3] 3R_17313693_SNP [dm6]	C	T	4.431e^-4	0.931	INTERGENIC
2L	12280905	2L_12280905_SNP [dm3] 2L_12280905_SNP [dm6]	A	C	4.433e^-4	0.931	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10794161	X_10794161_SNP [dm3] X_10900128_SNP [dm6]	A	C	4.435e^-4	0.931	SPLICE_SITE_ACCEPTOR CG15208 UPSTREAM CG1582 & 1 other INTRON CG15208	TF binding site BDTNP1_TFBS_dl
2R	16195325	2R_16195325_SNP [dm3] 2R_20307820_SNP [dm6]	G	T	4.436e^-4	0.931	DOWNSTREAM CG13868 INTRON CG11200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	7770341	3R_7770341_SNP [dm3] 3R_11944619_SNP [dm6]	C	G	4.438e^-4	0.931	INTRON Cad87A
3R	25290291	3R_25290291_SNP [dm3] 3R_29464569_SNP [dm6]	A	T	4.439e^-4	0.931	INTRON Ptp99A
2L	14240044	2L_14240044_SNP [dm3] 2L_14240044_SNP [dm6]	A	G	4.440e^-4	0.931	INTERGENIC
3L	12641244	3L_12641244_SNP [dm3] 3L_12648144_SNP [dm6]	G	A	4.440e^-4	0.931	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9685724	2R_9685724_SNP [dm3] 2R_13798219_SNP [dm6]	C	T	4.442e^-4	0.931	INTRON Cpr50Cb
2R	13016478	2R_13016478_SNP [dm3] 2R_17128973_SNP [dm6]	C	T	4.442e^-4	0.931	SYNONYMOUS_CODING Cda9
3R	13187998	3R_13187998_SNP [dm3] 3R_17362276_SNP [dm6]	A	C	4.458e^-4	0.931	INTRON beat-IIa
X	10772618	X_10772618_SNP [dm3] X_10878585_SNP [dm6]	T	C	4.458e^-4	0.931	SYNONYMOUS_CODING Ork1 UPSTREAM CG1637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11120988	3R_11120988_SNP [dm3] 3R_15295266_SNP [dm6]	C	A	4.459e^-4	0.931	NON_SYNONYMOUS_CODING Tm1 INTRON Tm1
3R	11120990	3R_11120990_SNP [dm3] 3R_15295268_SNP [dm6]	A	T	4.459e^-4	0.931	SYNONYMOUS_CODING Tm1 INTRON Tm1
3R	16853866	3R_16853866_SNP [dm3] 3R_21028144_SNP [dm6]	G	C	4.461e^-4	0.931	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
3R	18422929	3R_18422929_DEL [dm3] 3R_22597207_DEL [dm6]	TGGT	T	4.475e^-4	0.931	INTRON Efa6	TF binding site mE1_TFBS_HSA
3L	2268641	3L_2268641_SNP [dm3] 3L_2268641_SNP [dm6]	C	A	4.475e^-4	0.931	UPSTREAM CG32302 DOWNSTREAM obst-I INTERGENIC
2R	2743201	2R_2743201_SNP [dm3] 2R_6855696_SNP [dm6]	A	C	4.476e^-4	0.931	INTERGENIC
2R	14662742	2R_14662742_SNP [dm3] 2R_18775237_SNP [dm6]	A	C	4.476e^-4	0.931	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7171894	2L_7171894_SNP [dm3] 2L_7171894_SNP [dm6]	C	A	4.477e^-4	0.931	INTERGENIC
3R	8215997	3R_8215997_SNP [dm3] 3R_12390275_SNP [dm6]	C	T	4.491e^-4	0.931	DOWNSTREAM CG10096 & 1 other INTRON CG34402
2L	12226651	2L_12226651_SNP [dm3] 2L_12226651_SNP [dm6]	G	A	4.493e^-4	0.931	INTRON aret
3R	20848802	3R_20848802_SNP [dm3] 3R_25023080_SNP [dm6]	T	A	4.494e^-4	0.931	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	19108350	3R_19108350_SNP [dm3] 3R_23282628_SNP [dm6]	G	C	4.505e^-4	0.931	INTRON Cdc16	TF binding site mE1_TFBS_sens
2L	3395891	2L_3395891_SNP [dm3] 2L_3395891_SNP [dm6]	C	T	4.508e^-4	0.931	INTERGENIC
3R	1412288	3R_1412288_SNP [dm3] 3R_5586566_SNP [dm6]	G	A	4.510e^-4	0.931	NON_SYNONYMOUS_CODING CG2926	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3828318	2L_3828318_DEL [dm3] 2L_3828318_DEL [dm6]	CC	C	4.517e^-4	0.931	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3447691	3R_3447691_SNP [dm3] 3R_7621969_SNP [dm6]	T	A	4.523e^-4	0.931	INTRON CG34127
3L	18901731	3L_18901731_SNP [dm3] 3L_18908631_SNP [dm6]	A	G	4.527e^-4	0.931	SYNONYMOUS_CODING Ir75d UTR_3_PRIME CG14077 & 1 other	TF binding site mE1_TFBS_cad
2R	18260039	2R_18260039_SNP [dm3] 2R_22372534_SNP [dm6]	G	A	4.528e^-4	0.931	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	6084953	2R_6084953_SNP [dm3] 2R_10197448_SNP [dm6]	A	G	4.529e^-4	0.931	UTR_3_PRIME CG34221 DOWNSTREAM CG34221	TF binding site BDTNP1_TFBS_twi
3R	23558732	3R_23558732_SNP [dm3] 3R_27733010_SNP [dm6]	C	A	4.533e^-4	0.931	INTERGENIC
3L	9134466	3L_9134466_SNP [dm3] 3L_9141366_SNP [dm6]	T	C	4.535e^-4	0.931	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15074805	2R_15074805_SNP [dm3] 2R_19187300_SNP [dm6]	G	C	4.536e^-4	0.931	INTRON hppy
3R	15814105	3R_15814105_SNP [dm3] 3R_19988383_SNP [dm6]	A	G	4.538e^-4	0.931	INTRON Hs6st	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18129987	3R_18129987_SNP [dm3] 3R_22304265_SNP [dm6]	C	T	4.539e^-4	0.931	UTR_3_PRIME CG7084 DOWNSTREAM CG7084
3R	11127953	3R_11127953_SNP [dm3] 3R_15302231_SNP [dm6]	A	C	4.542e^-4	0.931	INTRON Tm1	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11118603	3R_11118603_SNP [dm3] 3R_15292881_SNP [dm6]	T	C	4.553e^-4	0.931	INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	9510691	X_9510691_SNP [dm3] X_9616658_SNP [dm6]	C	T	4.554e^-4	0.931	INTRON CG42797
3R	12712308	3R_12712308_SNP [dm3] 3R_16886586_SNP [dm6]	T	G	4.566e^-4	0.931	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	14237975	X_14237975_SNP [dm3] X_14343942_SNP [dm6]	T	C	4.569e^-4	0.931	INTRON dpr8
2R	10892711	2R_10892711_SNP [dm3] 2R_15005206_SNP [dm6]	A	G	4.570e^-4	0.931	INTERGENIC
2R	19415074	2R_19415074_SNP [dm3] 2R_23527551_SNP [dm6]	C	T	4.574e^-4	0.931	SYNONYMOUS_CODING mi DOWNSTREAM bw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15327350	3R_15327350_SNP [dm3] 3R_19501628_SNP [dm6]	G	T	4.581e^-4	0.931	INTRON Dys	TF binding site mE1_TFBS_HSA
X	20396997	X_20396997_DEL [dm3] X_20525970_DEL [dm6]	TA	T	4.586e^-4	0.931	INTERGENIC	transposable element FlyBase
2R	18854086	2R_18854086_SNP [dm3] 2R_22966563_SNP [dm6]	C	T	4.589e^-4	0.931	INTERGENIC
2R	18260101	2R_18260101_SNP [dm3] 2R_22372596_SNP [dm6]	T	C	4.607e^-4	0.931	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
X	10978735	X_10978735_DEL [dm3] X_11084702_DEL [dm6]	AGTTTTGT	A	4.615e^-4	0.931	INTRON sev
2R	8928517	2R_8928517_SNP [dm3] 2R_13041012_SNP [dm6]	C	T	4.624e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7267657	2R_7267657_SNP [dm3] 2R_11380152_SNP [dm6]	G	A	4.624e^-4	0.931	UPSTREAM Tsp47F DOWNSTREAM Sod3 INTERGENIC
2R	18326961	2R_18326961_SNP [dm3] 2R_22439456_SNP [dm6]	C	A	4.625e^-4	0.931	INTERGENIC
3R	13139413	3R_13139413_INS [dm3] 3R_17313691_INS [dm6]	T	GAGATGCA	4.625e^-4	0.931	INTERGENIC
3R	7796185	3R_7796185_SNP [dm3] 3R_11970463_SNP [dm6]	G	T	4.628e^-4	0.931	NON_SYNONYMOUS_CODING GC1
3R	25797603	3R_25797603_SNP [dm3] 3R_29971881_SNP [dm6]	G	C	4.628e^-4	0.931	INTERGENIC
3R	8615043	3R_8615043_SNP [dm3] 3R_12789321_SNP [dm6]	T	C	4.650e^-4	0.931	INTERGENIC
2R	21086884	2R_21086884_DEL [dm3] 2R_25199361_DEL [dm6]	TT	C	4.660e^-4	0.931	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1329419	3R_1329419_SNP [dm3] 3R_5503697_SNP [dm6]	A	G	4.662e^-4	0.931	UPSTREAM CG31547 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20326566	3R_20326566_SNP [dm3] 3R_24500844_SNP [dm6]	T	C	4.663e^-4	0.931	INTERGENIC
3R	18743119	3R_18743119_SNP [dm3] 3R_22917397_SNP [dm6]	C	A	4.668e^-4	0.931	INTRON klg
3R	4506059	3R_4506059_SNP [dm3] 3R_8680337_SNP [dm6]	C	A	4.669e^-4	0.931	UPSTREAM CG33325 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
3R	3564120	3R_3564120_SNP [dm3] 3R_7738398_SNP [dm6]	G	C	4.670e^-4	0.931	DOWNSTREAM CG43254 INTERGENIC
3R	10131669	3R_10131669_SNP [dm3] 3R_14305947_SNP [dm6]	G	A	4.679e^-4	0.931	INTRON su_Hw_
3R	16647645	3R_16647645_SNP [dm3] 3R_20821923_SNP [dm6]	C	A	4.683e^-4	0.931	UPSTREAM RpS20 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	14837477	3R_14837477_SNP [dm3] 3R_19011755_SNP [dm6]	G	A	4.685e^-4	0.931	SYNONYMOUS_CODING gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	13489449	3R_13489449_SNP [dm3] 3R_17663727_SNP [dm6]	G	T	4.686e^-4	0.931	SYNONYMOUS_CODING CG14322
X	5118532	X_5118532_SNP [dm3] X_5224499_SNP [dm6]	T	A	4.692e^-4	0.931	INTRON CG15465 & 1 other
3L	1381787	3L_1381787_SNP [dm3] 3L_1381787_SNP [dm6]	C	G	4.695e^-4	0.931	INTRON Ptp61F & 1 other
3R	3219936	3R_3219936_SNP [dm3] 3R_7394214_SNP [dm6]	G	A	4.700e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15775449	2L_15775449_SNP [dm3] 2L_15775449_SNP [dm6]	C	T	4.708e^-4	0.931	DOWNSTREAM CG43760 INTERGENIC
3R	8353044	3R_8353044_SNP [dm3] 3R_12527322_SNP [dm6]	C	T	4.713e^-4	0.931	INTRON Octbeta3R & 1 other
2R	19284235	2R_19284235_SNP [dm3] 2R_23396712_SNP [dm6]	G	T	4.722e^-4	0.931	UPSTREAM CG3530 DOWNSTREAM CG3520 INTERGENIC
X	3006715	X_3006715_SNP [dm3] X_3112682_SNP [dm6]	A	G	4.723e^-4	0.931	INTRON kirre
2R	18583748	2R_18583748_SNP [dm3] 2R_22696243_SNP [dm6]	G	A	4.724e^-4	0.931	NON_SYNONYMOUS_CODING robo	TF binding site mE1_TFBS_HSA
3L	3486344	3L_3486344_SNP [dm3] 3L_3486344_SNP [dm6]	T	C	4.727e^-4	0.931	INTRON CG42324
3R	12659813	3R_12659813_SNP [dm3] 3R_16834091_SNP [dm6]	G	C	4.727e^-4	0.931	DOWNSTREAM iab-8 INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	9875953	2L_9875953_SNP [dm3] 2L_9875953_SNP [dm6]	C	G	4.744e^-4	0.931	INTRON nAChRalpha6
2L	3396588	2L_3396588_SNP [dm3] 2L_3396588_SNP [dm6]	G	A	4.758e^-4	0.931	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14967607	3L_14967607_DEL [dm3] 3L_14974507_DEL [dm6]	CTGTAAATATAAATGTAAGG...	C	4.760e^-4	0.931	UPSTREAM Ocho INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	2503646	X_2503646_SNP [dm3] X_2609613_SNP [dm6]	A	G	4.765e^-4	0.931	SYNONYMOUS_CODING CG8636 UPSTREAM Bzd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	382166	3L_382166_SNP [dm3] 3L_382166_SNP [dm6]	T	A	4.774e^-4	0.931	INTRON trh
3R	3517392	3R_3517392_SNP [dm3] 3R_7691670_SNP [dm6]	C	A	4.790e^-4	0.931	INTRON Nlg1	TF binding site mE1_TFBS_cad
3L	2273964	3L_2273964_SNP [dm3] 3L_2273964_SNP [dm6]	C	T	4.794e^-4	0.931	DOWNSTREAM tRNA:CR32303 INTERGENIC
3L	13252220	3L_13252220_SNP [dm3] 3L_13259120_SNP [dm6]	A	G	4.804e^-4	0.931	INTRON caps
2R	20202225	2R_20202225_SNP [dm3] 2R_24314702_SNP [dm6]	G	T	4.809e^-4	0.931	INTERGENIC
2L	15308167	2L_15308167_SNP [dm3] 2L_15308167_SNP [dm6]	T	C	4.810e^-4	0.931	INTERGENIC
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	4.811e^-4	0.931	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
2L	2819594	2L_2819594_SNP [dm3] 2L_2819594_SNP [dm6]	A	T	4.811e^-4	0.931	INTRON Duox	TF binding site mE1_TFBS_cad
2L	3028667	2L_3028667_SNP [dm3] 2L_3028667_SNP [dm6]	T	G	4.814e^-4	0.931	NON_SYNONYMOUS_CODING CG3605 UPSTREAM CG17219	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	21099486	X_21099486_SNP [dm3] X_21228459_SNP [dm6]	G	A	4.820e^-4	0.931	INTRON CG32521
2R	13390926	2R_13390926_DEL [dm3] 2R_17503421_DEL [dm6]	GGAATTA	G	4.821e^-4	0.931	INTRON CG43164	TF binding site BDTNP1_TFBS_dl
3R	7770487	3R_7770487_SNP [dm3] 3R_11944765_SNP [dm6]	A	G	4.821e^-4	0.931	INTRON Cad87A
X	4120367	X_4120367_SNP [dm3] X_4226334_SNP [dm6]	C	T	4.825e^-4	0.931	INTERGENIC
3R	3397472	3R_3397472_SNP [dm3] 3R_7571750_SNP [dm6]	T	A	4.834e^-4	0.931	UTR_3_PRIME CG34127
2L	2876721	2L_2876721_SNP [dm3] 2L_2876721_SNP [dm6]	T	C	4.835e^-4	0.931	DOWNSTREAM Prx6005 INTRON CG8814
2R	16772511	2R_16772511_SNP [dm3] 2R_20885006_SNP [dm6]	T	G	4.838e^-4	0.931	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	18329498	2R_18329498_SNP [dm3] 2R_22441993_SNP [dm6]	G	A	4.855e^-4	0.931	INTERGENIC
X	10771611	X_10771611_SNP [dm3] X_10877578_SNP [dm6]	G	T	4.861e^-4	0.931	UTR_5_PRIME CG1637 DOWNSTREAM Ork1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
3L	4110102	3L_4110102_SNP [dm3] 3L_4110102_SNP [dm6]	T	C	4.865e^-4	0.931	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	4265831	3R_4265831_SNP [dm3] 3R_8440109_SNP [dm6]	T	C	4.867e^-4	0.931	INTRON CG45263
2R	16140572	2R_16140572_SNP [dm3] 2R_20253067_SNP [dm6]	G	A	4.869e^-4	0.931	INTRON CG9864
3R	19108331	3R_19108331_SNP [dm3] 3R_23282609_SNP [dm6]	C	T	4.873e^-4	0.931	SYNONYMOUS_CODING Cdc16	TF binding site mE1_TFBS_sens
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	4.896e^-4	0.931	INTERGENIC
3R	9621144	3R_9621144_SNP [dm3] 3R_13795422_SNP [dm6]	G	T	4.899e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9654605	3R_9654605_SNP [dm3] 3R_13828883_SNP [dm6]	G	A	4.903e^-4	0.931	UPSTREAM Mst87F DOWNSTREAM CR43300 INTERGENIC
3L	4715229	3L_4715229_SNP [dm3] 3L_4715229_SNP [dm6]	A	T	4.920e^-4	0.931	INTRON RhoGEF64C
2L	15775464	2L_15775464_SNP [dm3] 2L_15775464_SNP [dm6]	G	A	4.925e^-4	0.931	DOWNSTREAM CG43760 INTERGENIC
2L	13643649	2L_13643649_SNP [dm3] 2L_13643649_SNP [dm6]	C	T	4.933e^-4	0.931	DOWNSTREAM CR44726 INTERGENIC
3L	2187679	3L_2187679_SNP [dm3] 3L_2187679_SNP [dm6]	G	T	4.937e^-4	0.931	DOWNSTREAM CG13810 INTERGENIC	TF binding site mE1_TFBS_cad
2R	19504095	2R_19504095_SNP [dm3] 2R_23616572_SNP [dm6]	T	C	4.938e^-4	0.931	NON_SYNONYMOUS_CODING CG17664
3R	9542639	3R_9542639_SNP [dm3] 3R_13716917_SNP [dm6]	C	G	4.943e^-4	0.931	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2L	3782681	2L_3782681_SNP [dm3] 2L_3782681_SNP [dm6]	C	A	4.943e^-4	0.931	SYNONYMOUS_CODING bowl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12870762	3L_12870762_SNP [dm3] 3L_12877662_SNP [dm6]	G	T	4.943e^-4	0.931	INTERGENIC
2L	2513835	2L_2513835_SNP [dm3] 2L_2513835_SNP [dm6]	A	T	4.944e^-4	0.931	INTERGENIC
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	4.949e^-4	0.931	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16051913	2R_16051913_SNP [dm3] 2R_20164408_SNP [dm6]	G	A	4.955e^-4	0.931	INTERGENIC
2L	12280690	2L_12280690_SNP [dm3] 2L_12280690_SNP [dm6]	A	C	4.970e^-4	0.931	INTRON aret	TF binding site mE1_TFBS_sbb
3L	4104646	3L_4104646_SNP [dm3] 3L_4104646_SNP [dm6]	T	G	4.978e^-4	0.931	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	10567464	X_10567464_SNP [dm3] X_10673431_SNP [dm6]	T	A	4.983e^-4	0.931	UTR_5_PRIME CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
3R	13139468	3R_13139468_SNP [dm3] 3R_17313746_SNP [dm6]	A	T	4.985e^-4	0.931	INTERGENIC
2R	10965382	2R_10965382_INS [dm3] 2R_15077877_INS [dm6]	T	TAAT	4.996e^-4	0.931	INTERGENIC
2R	10965384	2R_10965384_SNP [dm3] 2R_15077879_SNP [dm6]	T	G	4.996e^-4	0.931	INTERGENIC
3L	15688015	3L_15688015_SNP [dm3] 3L_15694915_SNP [dm6]	A	T	5.031e^-4	0.931	INTERGENIC
3R	4918874	3R_4918874_SNP [dm3] 3R_9093152_SNP [dm6]	G	C	5.039e^-4	0.931	INTRON pum
3L	2280263	3L_2280263_SNP [dm3] 3L_2280263_SNP [dm6]	C	T	5.040e^-4	0.931	INTERGENIC
3L	14205929	3L_14205929_SNP [dm3] 3L_14212829_SNP [dm6]	G	C	5.041e^-4	0.931	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.254e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.002716

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	15.9868	0.0003

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1871 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	19137292	2R_19137292_SNP [dm3] 2R_23249769_SNP [dm6]	A	G	1.176e^-8	0.022	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9619209	3R_9619209_SNP [dm3] 3R_13793487_SNP [dm6]	A	T	1.330e^-7	0.125	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14832720	3R_14832720_SNP [dm3] 3R_19006998_SNP [dm6]	A	G	7.475e^-7	0.467	INTRON gukh
X	9093714	X_9093714_SNP [dm3] X_9199681_SNP [dm6]	G	A	1.128e^-6	0.468	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14967607	3L_14967607_DEL [dm3] 3L_14974507_DEL [dm6]	CTGTAAATATAAATGTAAGG...	C	1.247e^-6	0.468	UPSTREAM Ocho INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	9619267	3R_9619267_SNP [dm3] 3R_13793545_SNP [dm6]	C	T	3.294e^-6	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9093545	X_9093545_SNP [dm3] X_9199512_SNP [dm6]	G	A	4.732e^-6	0.921	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14434238	2R_14434238_INS [dm3] 2R_18546733_INS [dm6]	A	ACTTTTAT	4.783e^-6	0.921	INTRON Rgk2
3L	4080538	3L_4080538_SNP [dm3] 3L_4080538_SNP [dm6]	C	A	5.778e^-6	0.921	INTRON Gad1
3R	14380877	3R_14380877_SNP [dm3] 3R_18555155_SNP [dm6]	G	T	6.168e^-6	0.921	INTERGENIC
2R	18698293	2R_18698293_SNP [dm3] 2R_22810788_SNP [dm6]	G	T	6.953e^-6	0.921	INTRON stl
2R	19137301	2R_19137301_DEL [dm3] 2R_23249778_DEL [dm6]	GATAC	G	7.045e^-6	0.921	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	9093722	X_9093722_SNP [dm3] X_9199689_SNP [dm6]	G	A	7.592e^-6	0.921	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	6167713	X_6167713_SNP [dm3] X_6273680_SNP [dm6]	C	T	7.767e^-6	0.921	SYNONYMOUS_CODING Spt6	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2707543	2L_2707543_SNP [dm3] 2L_2707543_SNP [dm6]	C	A	8.125e^-6	0.921	INTRON CG31690
3R	13923480	3R_13923480_SNP [dm3] 3R_18097758_SNP [dm6]	T	G	9.653e^-6	0.921	INTRON sr
X	2373140	X_2373140_SNP [dm3] X_2479107_SNP [dm6]	G	A	1.049e^-5	0.921	UTR_3_PRIME trol DOWNSTREAM trol INTRON trol
2L	10940487	2L_10940487_SNP [dm3] 2L_10940487_SNP [dm6]	G	A	1.080e^-5	0.921	INTRON dpr2
3R	25427708	3R_25427708_SNP [dm3] 3R_29601986_SNP [dm6]	G	T	1.104e^-5	0.921	INTRON alph
3L	11348894	3L_11348894_SNP [dm3] 3L_11355794_SNP [dm6]	C	G	1.221e^-5	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21025422	3R_21025422_SNP [dm3] 3R_25199700_SNP [dm6]	T	C	1.334e^-5	0.921	UPSTREAM CG13654 INTRON Cad96Ca	TF binding site BDTNP1_TFBS_slp1
3R	14380884	3R_14380884_SNP [dm3] 3R_18555162_SNP [dm6]	T	C	1.352e^-5	0.921	INTERGENIC
2L	12830359	2L_12830359_SNP [dm3] 2L_12830359_SNP [dm6]	G	T	1.372e^-5	0.921	INTERGENIC
3L	8100732	3L_8100732_SNP [dm3] 3L_8107632_SNP [dm6]	C	T	1.590e^-5	0.921	INTRON Ect4	TF binding site BDTNP1_TFBS_twi
2L	18604347	2L_18604347_SNP [dm3] 2L_18604347_SNP [dm6]	T	G	1.611e^-5	0.921	INTRON CG10413	TF binding site BDTNP1_TFBS_da
2R	8801619	2R_8801619_SNP [dm3] 2R_12914114_SNP [dm6]	C	T	1.616e^-5	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	20883901	3R_20883901_SNP [dm3] 3R_25058179_SNP [dm6]	G	A	1.656e^-5	0.921	UPSTREAM Unc-13-4B INTRON Unc-13-4B
X	8902108	X_8902108_SNP [dm3] X_9008075_SNP [dm6]	A	G	1.722e^-5	0.921	INTRON rdgA & 1 other
3R	7768547	3R_7768547_SNP [dm3] 3R_11942825_SNP [dm6]	A	T	1.763e^-5	0.921	INTRON Cad87A
3R	21296904	3R_21296904_SNP [dm3] 3R_25471182_SNP [dm6]	T	C	1.786e^-5	0.921	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19439144	3R_19439144_SNP [dm3] 3R_23613422_SNP [dm6]	C	G	1.825e^-5	0.921	INTRON CG31145
3R	14380814	3R_14380814_SNP [dm3] 3R_18555092_SNP [dm6]	T	A	1.827e^-5	0.921	INTERGENIC
3R	14832816	3R_14832816_SNP [dm3] 3R_19007094_SNP [dm6]	C	A	1.844e^-5	0.921	INTRON gukh
3R	20883899	3R_20883899_SNP [dm3] 3R_25058177_SNP [dm6]	A	G	1.867e^-5	0.921	UPSTREAM Unc-13-4B INTRON Unc-13-4B
3L	4521888	3L_4521888_SNP [dm3] 3L_4521888_SNP [dm6]	G	A	1.907e^-5	0.921	INTRON Tie
3L	454517	3L_454517_SNP [dm3] 3L_454517_SNP [dm6]	G	A	1.928e^-5	0.921	INTRON klar
3L	14825977	3L_14825977_SNP [dm3] 3L_14832877_SNP [dm6]	C	A	1.930e^-5	0.921	INTRON CG17839
3R	2295732	3R_2295732_SNP [dm3] 3R_6470010_SNP [dm6]	T	C	1.933e^-5	0.921	SYNONYMOUS_CODING Neurochondrin	TF binding site mE1_TFBS_cad
3R	15769337	3R_15769337_SNP [dm3] 3R_19943615_SNP [dm6]	A	C	2.099e^-5	0.921	INTRON Hs6st
3L	14816511	3L_14816511_SNP [dm3] 3L_14823411_SNP [dm6]	A	G	2.104e^-5	0.921	INTRON CG17839
2L	6445512	2L_6445512_SNP [dm3] 2L_6445512_SNP [dm6]	T	C	2.112e^-5	0.921	SYNONYMOUS_CODING CG9527
2L	6093141	2L_6093141_SNP [dm3] 2L_6093141_SNP [dm6]	G	A	2.120e^-5	0.921	NON_SYNONYMOUS_CODING Kr-h1 UTR_3_PRIME CG45075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9457443	2R_9457443_INS [dm3] 2R_13569938_INS [dm6]	T	TGCAC	2.145e^-5	0.921	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	18704110	2R_18704110_SNP [dm3] 2R_22816605_SNP [dm6]	A	G	2.241e^-5	0.921	UPSTREAM CG30271 DOWNSTREAM stl INTRON CG30271
2L	18604349	2L_18604349_SNP [dm3] 2L_18604349_SNP [dm6]	G	A	2.250e^-5	0.921	INTRON CG10413	TF binding site BDTNP1_TFBS_da
3R	20006816	3R_20006816_SNP [dm3] 3R_24181094_SNP [dm6]	A	C	2.282e^-5	0.921	UTR_3_PRIME CG13606 INTRON CG13606
3R	20883893	3R_20883893_SNP [dm3] 3R_25058171_SNP [dm6]	C	A	2.443e^-5	0.921	UPSTREAM Unc-13-4B INTRON Unc-13-4B
3L	7993221	3L_7993221_SNP [dm3] 3L_8000121_SNP [dm6]	T	C	2.463e^-5	0.921	INTRON nmo
2R	16869540	2R_16869540_SNP [dm3] 2R_20982035_SNP [dm6]	G	A	2.470e^-5	0.921	SPLICE_SITE_REGION CG9313 SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4521889	3L_4521889_SNP [dm3] 3L_4521889_SNP [dm6]	T	A	2.574e^-5	0.921	INTRON Tie
2R	18662007	2R_18662007_SNP [dm3] 2R_22774502_SNP [dm6]	T	A	2.603e^-5	0.921	INTRON CG42260
2L	617998	2L_617998_SNP [dm3] 2L_617998_SNP [dm6]	C	T	2.622e^-5	0.921	INTERGENIC
3R	13756070	3R_13756070_SNP [dm3] 3R_17930348_SNP [dm6]	G	C	2.658e^-5	0.921	INTRON cpo
3L	19961534	3L_19961534_SNP [dm3] 3L_19968434_SNP [dm6]	T	A	2.793e^-5	0.921	INTRON Ac76E
2R	14362981	2R_14362981_SNP [dm3] 2R_18475476_SNP [dm6]	A	G	2.806e^-5	0.921	INTRON CG30116
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	2.856e^-5	0.921	INTRON Octbeta3R
3L	14615634	3L_14615634_SNP [dm3] 3L_14622534_SNP [dm6]	T	C	3.052e^-5	0.921	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2L	12555208	2L_12555208_SNP [dm3] 2L_12555208_SNP [dm6]	G	A	3.107e^-5	0.921	INTERGENIC
2R	19345973	2R_19345973_SNP [dm3] 2R_23458450_SNP [dm6]	G	A	3.198e^-5	0.921	SYNONYMOUS_CODING skpF INTRON CG43795	TF binding site mE1_TFBS_chinmo
3R	2295735	3R_2295735_SNP [dm3] 3R_6470013_SNP [dm6]	C	T	3.238e^-5	0.921	SYNONYMOUS_CODING Neurochondrin	TF binding site mE1_TFBS_cad
X	3935450	X_3935450_DEL [dm3] X_4041417_DEL [dm6]	GTGG	G	3.240e^-5	0.921	INTERGENIC
X	3935676	X_3935676_SNP [dm3] X_4041643_SNP [dm6]	G	A	3.240e^-5	0.921	INTERGENIC
3L	12539066	3L_12539066_SNP [dm3] 3L_12545966_SNP [dm6]	G	C	3.300e^-5	0.921	INTRON sowah
3R	11007534	3R_11007534_SNP [dm3] 3R_15181812_SNP [dm6]	C	T	3.311e^-5	0.921	UPSTREAM Mf INTRON Gyc88E
2L	10940553	2L_10940553_SNP [dm3] 2L_10940553_SNP [dm6]	C	T	3.333e^-5	0.921	INTRON dpr2
X	13609326	X_13609326_SNP [dm3] X_13715293_SNP [dm6]	G	T	3.342e^-5	0.921	SYNONYMOUS_CODING NnaD DOWNSTREAM NnaD INTRON CG9940 & 1 other	TF binding site mE1_TFBS_chinmo
3R	21030829	3R_21030829_SNP [dm3] 3R_25205107_SNP [dm6]	T	A	3.427e^-5	0.921	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
X	13797362	X_13797362_SNP [dm3] X_13903329_SNP [dm6]	T	G	3.492e^-5	0.921	INTRON mamo
X	3935456	X_3935456_SNP [dm3] X_4041423_SNP [dm6]	T	C	3.515e^-5	0.921	INTERGENIC
2L	3126784	2L_3126784_SNP [dm3] 2L_3126784_SNP [dm6]	A	C	3.521e^-5	0.921	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad
3R	22115690	3R_22115690_SNP [dm3] 3R_26289968_SNP [dm6]	T	A	3.529e^-5	0.921	INTERGENIC
X	8177152	X_8177152_SNP [dm3] X_8283119_SNP [dm6]	A	G	3.533e^-5	0.921	SYNONYMOUS_CODING nAChRalpha3
2L	3885408	2L_3885408_SNP [dm3] 2L_3885408_SNP [dm6]	A	C	3.588e^-5	0.922	INTRON capu	TF binding site mE1_TFBS_bab1
3R	22115699	3R_22115699_SNP [dm3] 3R_26289977_SNP [dm6]	A	G	3.722e^-5	0.931	INTERGENIC
3L	1725709	3L_1725709_SNP [dm3] 3L_1725709_SNP [dm6]	A	C	3.759e^-5	0.931	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi
2R	19132299	2R_19132299_SNP [dm3] 2R_23244776_SNP [dm6]	C	T	3.839e^-5	0.931	INTRON yip3
2R	13788985	2R_13788985_SNP [dm3] 2R_17901480_SNP [dm6]	G	A	3.857e^-5	0.931	INTRON Elk
3L	8034940	3L_8034940_SNP [dm3] 3L_8041840_SNP [dm6]	A	G	3.919e^-5	0.931	INTRON nmo
3L	11248639	3L_11248639_INS [dm3] 3L_11255539_INS [dm6]	A	AC	4.071e^-5	0.931	UTR_3_PRIME scyl DOWNSTREAM scyl	TF binding site BDTNP1_TFBS_dl
3R	7768481	3R_7768481_SNP [dm3] 3R_11942759_SNP [dm6]	G	A	4.111e^-5	0.931	INTRON Cad87A
2L	6093149	2L_6093149_SNP [dm3] 2L_6093149_SNP [dm6]	A	G	4.131e^-5	0.931	SYNONYMOUS_CODING Kr-h1 UTR_3_PRIME CG45075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	465721	3L_465721_SNP [dm3] 3L_465721_SNP [dm6]	A	G	4.207e^-5	0.931	INTRON klar
3L	16207068	3L_16207068_SNP [dm3] 3L_16213968_SNP [dm6]	C	A	4.217e^-5	0.931	NON_SYNONYMOUS_CODING CG13073 EXON CR43891	TF binding site mE1_TFBS_HSA
2R	13888271	2R_13888271_SNP [dm3] 2R_18000766_SNP [dm6]	A	T	4.222e^-5	0.931	INTRON dpr13
3L	9964373	3L_9964373_SNP [dm3] 3L_9971273_SNP [dm6]	C	T	4.261e^-5	0.931	SYNONYMOUS_CODING CG6674 DOWNSTREAM Nc	TF binding site BDTNP1_TFBS_dl
3R	2807832	3R_2807832_INS [dm3] 3R_6982110_INS [dm6]	G	GCGG	4.270e^-5	0.931	INTRON Antp
3R	7757573	3R_7757573_SNP [dm3] 3R_11931851_SNP [dm6]	C	G	4.422e^-5	0.953	NON_SYNONYMOUS_CODING CG14731 INTRON Cad87A
3L	8034933	3L_8034933_INS [dm3] 3L_8041833_INS [dm6]	A	AGAA	4.515e^-5	0.954	INTRON nmo
3R	21498215	3R_21498215_SNP [dm3] 3R_25672493_SNP [dm6]	A	T	4.538e^-5	0.954	INTRON Lgr3
3R	13085617	3R_13085617_SNP [dm3] 3R_17259895_SNP [dm6]	T	C	4.810e^-5	0.954	INTRON beat-IIb
2R	8801626	2R_8801626_SNP [dm3] 2R_12914121_SNP [dm6]	A	G	4.816e^-5	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	21203421	3R_21203421_SNP [dm3] 3R_25377699_SNP [dm6]	A	C	4.835e^-5	0.954	INTRON Fur1
3R	10816846	3R_10816846_SNP [dm3] 3R_14991124_SNP [dm6]	A	G	4.873e^-5	0.954	INTERGENIC
3R	9676783	3R_9676783_DEL [dm3] 3R_13851061_DEL [dm6]	GGAAAATTAAGCTATGCGAA...	CCC	4.980e^-5	0.954	INTERGENIC
3L	7418389	3L_7418389_SNP [dm3] 3L_7425289_SNP [dm6]	A	G	5.079e^-5	0.954	INTRON CG42458
3L	4387745	3L_4387745_SNP [dm3] 3L_4387745_SNP [dm6]	C	T	5.111e^-5	0.954	INTRON slow
3R	14380904	3R_14380904_SNP [dm3] 3R_18555182_SNP [dm6]	A	G	5.220e^-5	0.954	INTERGENIC
3R	18383853	3R_18383853_SNP [dm3] 3R_22558131_SNP [dm6]	A	G	5.309e^-5	0.954	DOWNSTREAM CG5278 INTERGENIC
2L	6093032	2L_6093032_SNP [dm3] 2L_6093032_SNP [dm6]	C	T	5.320e^-5	0.954	SYNONYMOUS_CODING Kr-h1 UTR_3_PRIME CG45075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	3443272	X_3443272_SNP [dm3] X_3549239_SNP [dm6]	A	G	5.331e^-5	0.954	INTRON CG32791
2R	11736495	2R_11736495_SNP [dm3] 2R_15848990_SNP [dm6]	C	T	5.400e^-5	0.954	UTR_5_PRIME tun
3R	3270516	3R_3270516_SNP [dm3] 3R_7444794_SNP [dm6]	A	T	5.507e^-5	0.954	INTERGENIC
3R	14381739	3R_14381739_SNP [dm3] 3R_18556017_SNP [dm6]	A	G	5.539e^-5	0.954	INTERGENIC
3L	8837215	3L_8837215_SNP [dm3] 3L_8844115_SNP [dm6]	A	C	5.568e^-5	0.954	INTRON dally
X	7882907	X_7882907_SNP [dm3] X_7988874_SNP [dm6]	G	A	5.570e^-5	0.954	INTERGENIC
3R	7405080	3R_7405080_SNP [dm3] 3R_11579358_SNP [dm6]	A	T	5.594e^-5	0.954	NON_SYNONYMOUS_CODING CG5342 UPSTREAM CG6790
3R	7768218	3R_7768218_SNP [dm3] 3R_11942496_SNP [dm6]	A	C	5.599e^-5	0.954	INTRON Cad87A
3L	19967126	3L_19967126_DEL [dm3] 3L_19974026_DEL [dm6]	TATCTAATGTTGAA...	T	5.633e^-5	0.954	INTRON Ac76E
3L	6899066	3L_6899066_SNP [dm3] 3L_6905966_SNP [dm6]	T	C	5.684e^-5	0.954	INTERGENIC
3R	2369436	3R_2369436_SNP [dm3] 3R_6543714_SNP [dm6]	A	T	5.801e^-5	0.954	INTRON dpr11	TF binding site mE1_TFBS_cad
3R	22115635	3R_22115635_SNP [dm3] 3R_26289913_SNP [dm6]	C	A	5.821e^-5	0.954	INTERGENIC
2L	7791880	2L_7791880_SNP [dm3] 2L_7791880_SNP [dm6]	A	G	5.856e^-5	0.954	INTRON LKR
3R	13886503	3R_13886503_SNP [dm3] 3R_18060781_SNP [dm6]	G	T	5.912e^-5	0.954	INTERGENIC
3R	22115678	3R_22115678_SNP [dm3] 3R_26289956_SNP [dm6]	A	T	5.924e^-5	0.954	INTERGENIC
3R	12938497	3R_12938497_SNP [dm3] 3R_17112775_SNP [dm6]	T	C	5.930e^-5	0.954	INTRON cher	TF binding site mE1_TFBS_cnc
3R	19575970	3R_19575970_SNP [dm3] 3R_23750248_SNP [dm6]	C	T	6.017e^-5	0.954	SYNONYMOUS_CODING Hmgcr DOWNSTREAM RanBP3	TF binding site mE1_TFBS_cad
3R	25170623	3R_25170623_SNP [dm3] 3R_29344901_SNP [dm6]	G	A	6.106e^-5	0.954	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	454516	3L_454516_SNP [dm3] 3L_454516_SNP [dm6]	T	C	6.201e^-5	0.954	INTRON klar
2R	17416187	2R_17416187_SNP [dm3] 2R_21528682_SNP [dm6]	G	A	6.249e^-5	0.954	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14826004	3L_14826004_SNP [dm3] 3L_14832904_SNP [dm6]	G	C	6.262e^-5	0.954	INTRON CG17839
2L	3882051	2L_3882051_SNP [dm3] 2L_3882051_SNP [dm6]	G	T	6.292e^-5	0.954	INTRON capu
2L	12997176	2L_12997176_SNP [dm3] 2L_12997176_SNP [dm6]	G	A	6.328e^-5	0.954	INTRON CG12404
2R	18769681	2R_18769681_SNP [dm3] 2R_22882158_SNP [dm6]	A	G	6.515e^-5	0.954	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7239079	2L_7239079_SNP [dm3] 2L_7239079_SNP [dm6]	G	A	6.556e^-5	0.954	INTRON Ndae1
3R	23031305	3R_23031305_SNP [dm3] 3R_27205583_SNP [dm6]	G	A	6.678e^-5	0.954	INTERGENIC	regulatory region REDfly_CRMs
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	6.928e^-5	0.954	INTRON Octbeta3R
3R	14380849	3R_14380849_SNP [dm3] 3R_18555127_SNP [dm6]	T	A	7.083e^-5	0.954	INTERGENIC
3R	25077001	3R_25077001_SNP [dm3] 3R_29251279_SNP [dm6]	C	T	7.175e^-5	0.954	UPSTREAM SP1029 DOWNSTREAM stg INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	15270616	2R_15270616_SNP [dm3] 2R_19383111_SNP [dm6]	G	A	7.337e^-5	0.954	SYNONYMOUS_CODING CG10073
2R	10993286	2R_10993286_SNP [dm3] 2R_15105781_SNP [dm6]	A	C	7.409e^-5	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2343205	3R_2343205_SNP [dm3] 3R_6517483_SNP [dm6]	A	G	7.430e^-5	0.954	INTERGENIC
2L	8033585	2L_8033585_SNP [dm3] 2L_8033585_SNP [dm6]	C	G	7.440e^-5	0.954	INTRON CG7367 & 1 other
2L	14012555	2L_14012555_SNP [dm3] 2L_14012555_SNP [dm6]	T	C	7.462e^-5	0.954	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8816309	3L_8816309_SNP [dm3] 3L_8823209_SNP [dm6]	C	T	7.493e^-5	0.954	INTERGENIC
3R	2350038	3R_2350038_SNP [dm3] 3R_6524316_SNP [dm6]	T	C	7.518e^-5	0.954	INTERGENIC
3R	25810994	3R_25810994_SNP [dm3] 3R_29985272_SNP [dm6]	C	A	7.554e^-5	0.954	INTRON CG7896	TF binding site mE1_TFBS_cad
3L	5853333	3L_5853333_SNP [dm3] 3L_5860233_SNP [dm6]	C	T	7.871e^-5	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	2361025	3L_2361025_SNP [dm3] 3L_2361025_SNP [dm6]	A	T	7.890e^-5	0.954	NON_SYNONYMOUS_CODING CG13801
2R	14224968	2R_14224968_SNP [dm3] 2R_18337463_SNP [dm6]	T	C	7.944e^-5	0.954	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13631696	2L_13631696_DEL [dm3] 2L_13631696_DEL [dm6]	TCGTTCATTCGTGTT...	T	7.995e^-5	0.954	DOWNSTREAM CR43410 INTRON kuz
3R	7762307	3R_7762307_SNP [dm3] 3R_11936585_SNP [dm6]	T	A	8.077e^-5	0.954	INTRON Cad87A
3R	8253437	3R_8253437_SNP [dm3] 3R_12427715_SNP [dm6]	C	T	8.094e^-5	0.954	NON_SYNONYMOUS_CODING Sas DOWNSTREAM CG5641	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	8.129e^-5	0.954	INTRON CR44941
3R	8346633	3R_8346633_SNP [dm3] 3R_12520911_SNP [dm6]	G	A	8.232e^-5	0.954	INTRON Octbeta3R
2R	19384679	2R_19384679_SNP [dm3] 2R_23497156_SNP [dm6]	T	C	8.238e^-5	0.954	INTERGENIC
3L	10860530	3L_10860530_SNP [dm3] 3L_10867430_SNP [dm6]	T	G	8.280e^-5	0.954	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	19321026	3R_19321026_SNP [dm3] 3R_23495304_SNP [dm6]	G	T	8.297e^-5	0.954	INTERGENIC
3R	21030929	3R_21030929_SNP [dm3] 3R_25205207_SNP [dm6]	T	G	8.316e^-5	0.954	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
3L	8035013	3L_8035013_SNP [dm3] 3L_8041913_SNP [dm6]	T	A	8.320e^-5	0.954	INTRON nmo
2R	19145977	2R_19145977_SNP [dm3] 2R_23258454_SNP [dm6]	C	T	8.335e^-5	0.954	INTERGENIC
2L	14054019	2L_14054019_SNP [dm3] 2L_14054019_SNP [dm6]	T	C	8.422e^-5	0.954	INTRON nAChRalpha5	TF binding site mE1_TFBS_Trl
X	22155214	X_22155214_SNP [dm3] X_22753378_SNP [dm6]	T	A	8.506e^-5	0.954	INTRON CR44997
3R	9613891	3R_9613891_SNP [dm3] 3R_13788169_SNP [dm6]	T	A	8.527e^-5	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8288562	3R_8288562_SNP [dm3] 3R_12462840_SNP [dm6]	C	T	8.532e^-5	0.954	DOWNSTREAM CG12267 INTRON CG5608	TF binding site mE1_TFBS_inv
X	18446528	X_18446528_SNP [dm3] X_18552495_SNP [dm6]	C	G	8.558e^-5	0.954	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23367216	3R_23367216_SNP [dm3] 3R_27541494_SNP [dm6]	G	A	8.599e^-5	0.954	INTERGENIC
2L	5785057	2L_5785057_SNP [dm3] 2L_5785057_SNP [dm6]	G	T	8.748e^-5	0.954	DOWNSTREAM CG31913 INTRON CG9171
3L	6548474	3L_6548474_SNP [dm3] 3L_6555374_SNP [dm6]	C	T	8.774e^-5	0.954	INTRON CG18769	TF binding site mE1_TFBS_inv
2L	11471977	2L_11471977_SNP [dm3] 2L_11471977_SNP [dm6]	G	T	8.834e^-5	0.954	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16806332	2R_16806332_SNP [dm3] 2R_20918827_SNP [dm6]	G	A	8.951e^-5	0.954	INTRON Rx	TF binding site mE1_TFBS_chinmo
3L	7544208	3L_7544208_SNP [dm3] 3L_7551108_SNP [dm6]	T	C	8.985e^-5	0.954	INTERGENIC
3R	21037558	3R_21037558_SNP [dm3] 3R_25211836_SNP [dm6]	A	T	9.011e^-5	0.954	NON_SYNONYMOUS_CODING CG13654	TF binding site mE1_TFBS_cad
2L	8030608	2L_8030608_SNP [dm3] 2L_8030608_SNP [dm6]	A	C	9.085e^-5	0.954	UPSTREAM Cka DOWNSTREAM baf INTRON CG7367	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25427702	3R_25427702_SNP [dm3] 3R_29601980_SNP [dm6]	T	A	9.088e^-5	0.954	INTRON alph
X	7743962	X_7743962_SNP [dm3] X_7849929_SNP [dm6]	T	C	9.106e^-5	0.954	INTERGENIC
2R	16812405	2R_16812405_DEL [dm3] 2R_20924900_DEL [dm6]	AAACA	A	9.132e^-5	0.954	INTRON Rx
3R	22869896	3R_22869896_SNP [dm3] 3R_27044174_SNP [dm6]	G	A	9.149e^-5	0.954	INTRON RYa-R
2R	18774612	2R_18774612_SNP [dm3] 2R_22887089_SNP [dm6]	C	T	9.175e^-5	0.954	SYNONYMOUS_CODING asrij UPSTREAM CG3499 DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	2506414	2L_2506414_SNP [dm3] 2L_2506414_SNP [dm6]	A	T	9.185e^-5	0.954	DOWNSTREAM CR44607 INTERGENIC
3R	23843907	3R_23843907_SNP [dm3] 3R_28018185_SNP [dm6]	C	A	9.193e^-5	0.954	INTERGENIC
3L	19969059	3L_19969059_SNP [dm3] 3L_19975959_SNP [dm6]	G	T	9.222e^-5	0.954	INTRON Ac76E
3R	9677552	3R_9677552_SNP [dm3] 3R_13851830_SNP [dm6]	G	A	9.238e^-5	0.954	INTERGENIC
2R	18436241	2R_18436241_SNP [dm3] 2R_22548736_SNP [dm6]	G	A	9.329e^-5	0.954	INTRON px
3L	1930885	3L_1930885_SNP [dm3] 3L_1930885_SNP [dm6]	C	T	9.550e^-5	0.954	INTRON Dbx
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	9.583e^-5	0.954	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
2R	12488483	2R_12488483_SNP [dm3] 2R_16600978_SNP [dm6]	A	C	9.856e^-5	0.954	DOWNSTREAM CG5089 INTRON CG8303
2R	9972110	2R_9972110_SNP [dm3] 2R_14084605_SNP [dm6]	T	C	9.995e^-5	0.954	INTRON Prosap	TF binding site mE1_TFBS_bab1
3R	2807535	3R_2807535_SNP [dm3] 3R_6981813_SNP [dm6]	T	C	1.003e^-4	0.954	INTRON Antp	TF binding site BDTNP1_TFBS_da
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	1.006e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9591534	2R_9591534_SNP [dm3] 2R_13704029_SNP [dm6]	T	C	1.011e^-4	0.954	INTRON fas
3R	12938488	3R_12938488_SNP [dm3] 3R_17112766_SNP [dm6]	G	C	1.012e^-4	0.954	INTRON cher	TF binding site mE1_TFBS_cnc
3R	2633880	3R_2633880_SNP [dm3] 3R_6808158_SNP [dm6]	A	G	1.014e^-4	0.954	DOWNSTREAM CR42651 INTERGENIC
2L	8030580	2L_8030580_SNP [dm3] 2L_8030580_SNP [dm6]	T	A	1.023e^-4	0.954	UPSTREAM Cka DOWNSTREAM baf INTRON CG7367	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23952140	3R_23952140_SNP [dm3] 3R_28126418_SNP [dm6]	C	A	1.025e^-4	0.954	INTERGENIC
3R	23952147	3R_23952147_SNP [dm3] 3R_28126425_SNP [dm6]	T	A	1.025e^-4	0.954	INTERGENIC
3L	1132242	3L_1132242_SNP [dm3] 3L_1132242_SNP [dm6]	A	G	1.031e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs
2R	18204852	2R_18204852_DEL [dm3] 2R_22317347_DEL [dm6]	TT	T	1.033e^-4	0.954	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	20148996	X_20148996_SNP [dm3] X_20277970_SNP [dm6]	C	G	1.039e^-4	0.954	INTERGENIC
3R	14332999	3R_14332999_SNP [dm3] 3R_18507277_SNP [dm6]	C	T	1.050e^-4	0.954	UPSTREAM fru INTRON fru	TF binding site mE1_TFBS_HSA
3L	13333905	3L_13333905_SNP [dm3] 3L_13340805_SNP [dm6]	C	T	1.054e^-4	0.954	INTERGENIC
2R	8801630	2R_8801630_SNP [dm3] 2R_12914125_SNP [dm6]	G	T	1.072e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	11002203	3R_11002203_DEL [dm3] 3R_15176481_DEL [dm6]	AA	A	1.084e^-4	0.954	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3R	20883837	3R_20883837_SNP [dm3] 3R_25058115_SNP [dm6]	A	C	1.098e^-4	0.954	UPSTREAM Unc-13-4B INTRON Unc-13-4B
2R	14222237	2R_14222237_SNP [dm3] 2R_18334732_SNP [dm6]	G	A	1.099e^-4	0.954	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19132313	2R_19132313_SNP [dm3] 2R_23244790_SNP [dm6]	T	A	1.105e^-4	0.954	INTRON yip3
3L	4521872	3L_4521872_SNP [dm3] 3L_4521872_SNP [dm6]	T	A	1.110e^-4	0.954	INTRON Tie
2L	556857	2L_556857_SNP [dm3] 2L_556857_SNP [dm6]	A	C	1.110e^-4	0.954	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	11017890	3R_11017890_SNP [dm3] 3R_15192168_SNP [dm6]	A	C	1.115e^-4	0.954	SYNONYMOUS_CODING CG6752 DOWNSTREAM Gyc88E & 1 other
2L	12580599	2L_12580599_SNP [dm3] 2L_12580599_SNP [dm6]	C	T	1.117e^-4	0.954	UPSTREAM CR44596 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	12307777	2L_12307777_SNP [dm3] 2L_12307777_SNP [dm6]	C	T	1.122e^-4	0.954	INTRON aret
3R	23121374	3R_23121374_SNP [dm3] 3R_27295652_SNP [dm6]	C	A	1.148e^-4	0.954	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25814707	3R_25814707_SNP [dm3] 3R_29988985_SNP [dm6]	C	T	1.170e^-4	0.954	SYNONYMOUS_CODING CG7896	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	20121225	3R_20121225_SNP [dm3] 3R_24295503_SNP [dm6]	G	A	1.171e^-4	0.954	UTR_5_PRIME crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19222154	2R_19222154_SNP [dm3] 2R_23334631_SNP [dm6]	C	G	1.179e^-4	0.954	INTERGENIC
X	3456478	X_3456478_SNP [dm3] X_3562445_SNP [dm6]	G	A	1.184e^-4	0.954	INTRON CG32791 & 1 other
3L	17151290	3L_17151290_SNP [dm3] 3L_17158190_SNP [dm6]	C	G	1.195e^-4	0.954	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2781599	3R_2781599_SNP [dm3] 3R_6955877_SNP [dm6]	T	G	1.200e^-4	0.954	INTRON Antp
3L	694711	3L_694711_SNP [dm3] 3L_694711_SNP [dm6]	T	C	1.206e^-4	0.954	SYNONYMOUS_CODING CG13894	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	18603654	2L_18603654_DEL [dm3] 2L_18603654_DEL [dm6]	ATCAA	A	1.206e^-4	0.954	INTRON CG10413
3R	19320799	3R_19320799_SNP [dm3] 3R_23495077_SNP [dm6]	A	C	1.212e^-4	0.954	INTERGENIC
2L	15095483	2L_15095483_SNP [dm3] 2L_15095483_SNP [dm6]	T	G	1.216e^-4	0.954	INTRON CG15270
2L	12607291	2L_12607291_SNP [dm3] 2L_12607291_SNP [dm6]	A	T	1.227e^-4	0.954	INTRON nub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12760060	2L_12760060_SNP [dm3] 2L_12760060_SNP [dm6]	T	A	1.239e^-4	0.954	DOWNSTREAM CG15483 INTERGENIC
2R	9152355	2R_9152355_SNP [dm3] 2R_13264850_SNP [dm6]	A	C	1.243e^-4	0.954	NON_SYNONYMOUS_CODING CG42319 DOWNSTREAM CG42319
2L	11471989	2L_11471989_SNP [dm3] 2L_11471989_SNP [dm6]	T	C	1.251e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7307505	3L_7307505_SNP [dm3] 3L_7314405_SNP [dm6]	C	T	1.260e^-4	0.954	INTERGENIC
3L	4029931	3L_4029931_SNP [dm3] 3L_4029931_SNP [dm6]	C	T	1.275e^-4	0.954	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c
3R	7763496	3R_7763496_SNP [dm3] 3R_11937774_SNP [dm6]	G	A	1.276e^-4	0.954	INTRON Cad87A
3R	24938557	3R_24938557_INS [dm3] 3R_29112835_INS [dm6]	C	CTCTC	1.286e^-4	0.954	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11180021	3L_11180021_SNP [dm3] 3L_11186921_SNP [dm6]	G	C	1.290e^-4	0.954	INTRON GlcAT-P
2R	9149256	2R_9149256_SNP [dm3] 2R_13261751_SNP [dm6]	C	T	1.307e^-4	0.954	UPSTREAM CG42319 INTRON CG42319
2L	5021823	2L_5021823_SNP [dm3] 2L_5021823_SNP [dm6]	G	A	1.316e^-4	0.954	INTRON vkg
3R	7768516	3R_7768516_SNP [dm3] 3R_11942794_SNP [dm6]	T	C	1.321e^-4	0.954	INTRON Cad87A
3L	6622065	3L_6622065_SNP [dm3] 3L_6628965_SNP [dm6]	C	T	1.330e^-4	0.954	SYNONYMOUS_CODING GluRIA
X	13222756	X_13222756_SNP [dm3] X_13328723_SNP [dm6]	A	C	1.331e^-4	0.954	SYNONYMOUS_CODING IP3K2
3R	9609698	3R_9609698_SNP [dm3] 3R_13783976_SNP [dm6]	T	C	1.340e^-4	0.954	SYNONYMOUS_CODING Dip-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8109410	3L_8109410_SNP [dm3] 3L_8116310_SNP [dm6]	T	G	1.348e^-4	0.954	UTR_5_PRIME msk UPSTREAM Arp3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	18741729	2R_18741729_SNP [dm3] 2R_22854206_SNP [dm6]	T	C	1.348e^-4	0.954	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	7762299	3R_7762299_SNP [dm3] 3R_11936577_SNP [dm6]	C	T	1.350e^-4	0.954	INTRON Cad87A
3L	14615637	3L_14615637_SNP [dm3] 3L_14622537_SNP [dm6]	T	C	1.353e^-4	0.954	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2R	11806050	2R_11806050_SNP [dm3] 2R_15918545_SNP [dm6]	T	C	1.355e^-4	0.954	INTRON sli	TF binding site mE1_TFBS_cad
3R	24938589	3R_24938589_SNP [dm3] 3R_29112867_SNP [dm6]	A	C	1.358e^-4	0.954	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3260896	3L_3260896_SNP [dm3] 3L_3260896_SNP [dm6]	C	G	1.364e^-4	0.954	INTRON ckd
X	12140963	X_12140963_SNP [dm3] X_12246930_SNP [dm6]	G	C	1.378e^-4	0.954	INTRON Ten-a
2L	7408761	2L_7408761_SNP [dm3] 2L_7408761_SNP [dm6]	T	A	1.380e^-4	0.954	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
3R	23030895	3R_23030895_DEL [dm3] 3R_27205173_DEL [dm6]	TGTAATTACTT...	T	1.387e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs
3L	8109390	3L_8109390_SNP [dm3] 3L_8116290_SNP [dm6]	C	G	1.387e^-4	0.954	UTR_5_PRIME msk UPSTREAM Arp3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1647632	2L_1647632_SNP [dm3] 2L_1647632_SNP [dm6]	A	T	1.388e^-4	0.954	UPSTREAM CR45695 INTERGENIC
2R	18575384	2R_18575384_SNP [dm3] 2R_22687879_SNP [dm6]	G	C	1.396e^-4	0.954	SYNONYMOUS_CODING ppa	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23952135	3R_23952135_SNP [dm3] 3R_28126413_SNP [dm6]	A	T	1.417e^-4	0.954	INTERGENIC
3L	11182758	3L_11182758_SNP [dm3] 3L_11189658_SNP [dm6]	C	T	1.418e^-4	0.954	INTRON GlcAT-P
3R	14899338	3R_14899338_SNP [dm3] 3R_19073616_SNP [dm6]	G	T	1.424e^-4	0.954	INTRON cdi	TF binding site mE1_TFBS_chinmo
3R	7756961	3R_7756961_SNP [dm3] 3R_11931239_SNP [dm6]	A	T	1.431e^-4	0.954	UPSTREAM CG14731 INTRON Cad87A
3R	21990038	3R_21990038_SNP [dm3] 3R_26164316_SNP [dm6]	T	C	1.444e^-4	0.954	INTERGENIC
2L	10174660	2L_10174660_SNP [dm3] 2L_10174660_SNP [dm6]	A	G	1.453e^-4	0.954	DOWNSTREAM CG13137 INTRON CG44153
3L	7308597	3L_7308597_SNP [dm3] 3L_7315497_SNP [dm6]	T	A	1.464e^-4	0.954	INTERGENIC
2L	1069742	2L_1069742_SNP [dm3] 2L_1069742_SNP [dm6]	A	G	1.469e^-4	0.954	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9152751	2R_9152751_INS [dm3] 2R_13265246_INS [dm6]	A	AA	1.470e^-4	0.954	DOWNSTREAM CG42319 INTRON CG42319
2R	18436938	2R_18436938_SNP [dm3] 2R_22549433_SNP [dm6]	A	T	1.475e^-4	0.954	UPSTREAM CG6018 INTRON px
2L	5795312	2L_5795312_SNP [dm3] 2L_5795312_SNP [dm6]	G	A	1.478e^-4	0.954	INTRON CG9171
3L	5853130	3L_5853130_SNP [dm3] 3L_5860030_SNP [dm6]	A	G	1.479e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	18557843	2R_18557843_SNP [dm3] 2R_22670338_SNP [dm6]	C	A	1.490e^-4	0.954	UTR_3_PRIME CG13516 UPSTREAM RYBP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_HSA
3R	23843408	3R_23843408_SNP [dm3] 3R_28017686_SNP [dm6]	A	G	1.490e^-4	0.954	INTERGENIC
2L	9529991	2L_9529991_SNP [dm3] 2L_9529991_SNP [dm6]	A	T	1.524e^-4	0.954	DOWNSTREAM CG31883 INTRON Oatp30B
2R	18698183	2R_18698183_SNP [dm3] 2R_22810678_SNP [dm6]	A	T	1.530e^-4	0.954	INTRON stl	TF binding site BDTNP1_TFBS_twi
2R	16013443	2R_16013443_SNP [dm3] 2R_20125938_SNP [dm6]	G	A	1.532e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10158292	3R_10158292_SNP [dm3] 3R_14332570_SNP [dm6]	A	C	1.535e^-4	0.954	INTRON NK7.1
3R	18005605	3R_18005605_SNP [dm3] 3R_22179883_SNP [dm6]	T	C	1.538e^-4	0.954	INTRON SKIP
3R	19439124	3R_19439124_SNP [dm3] 3R_23613402_SNP [dm6]	A	T	1.544e^-4	0.954	INTRON CG31145
3R	8344006	3R_8344006_SNP [dm3] 3R_12518284_SNP [dm6]	A	G	1.550e^-4	0.954	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	23030845	3R_23030845_SNP [dm3] 3R_27205123_SNP [dm6]	T	A	1.551e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs
3R	23002423	3R_23002423_SNP [dm3] 3R_27176701_SNP [dm6]	G	A	1.561e^-4	0.954	INTRON Ser	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16212921	3L_16212921_SNP [dm3] 3L_16219821_SNP [dm6]	C	G	1.567e^-4	0.954	INTERGENIC
3L	11230741	3L_11230741_SNP [dm3] 3L_11237641_SNP [dm6]	A	C	1.571e^-4	0.954	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10891286	3L_10891286_SNP [dm3] 3L_10898186_SNP [dm6]	C	T	1.577e^-4	0.954	UTR_5_PRIME Aps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_zfh1
3L	2282411	3L_2282411_SNP [dm3] 3L_2282411_SNP [dm6]	A	G	1.585e^-4	0.954	UPSTREAM MsR2 INTERGENIC	TF binding site mE1_TFBS_Kr
2L	7235646	2L_7235646_SNP [dm3] 2L_7235646_SNP [dm6]	A	G	1.587e^-4	0.954	INTRON Ndae1
3R	19438962	3R_19438962_SNP [dm3] 3R_23613240_SNP [dm6]	G	T	1.589e^-4	0.954	INTRON CG31145
2R	18769753	2R_18769753_SNP [dm3] 2R_22882230_SNP [dm6]	G	A	1.590e^-4	0.954	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6896676	3L_6896676_SNP [dm3] 3L_6903576_SNP [dm6]	A	G	1.605e^-4	0.954	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2724922	3R_2724922_SNP [dm3] 3R_6899200_SNP [dm6]	G	T	1.609e^-4	0.954	INTRON Antp
3L	13973698	3L_13973698_SNP [dm3] 3L_13980598_SNP [dm6]	C	A	1.609e^-4	0.954	DOWNSTREAM CG17364 INTRON CG17364	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7278737	2R_7278737_SNP [dm3] 2R_11391232_SNP [dm6]	T	G	1.611e^-4	0.954	INTRON sprt
2R	19107554	2R_19107554_SNP [dm3] 2R_23220031_SNP [dm6]	G	A	1.611e^-4	0.954	INTERGENIC
3L	9486776	3L_9486776_SNP [dm3] 3L_9493676_SNP [dm6]	T	G	1.614e^-4	0.954	DOWNSTREAM path INTERGENIC
3L	18093340	3L_18093340_SNP [dm3] 3L_18100240_SNP [dm6]	C	A	1.614e^-4	0.954	INTRON CG13698
3L	11181566	3L_11181566_SNP [dm3] 3L_11188466_SNP [dm6]	C	T	1.616e^-4	0.954	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	13631604	3L_13631604_SNP [dm3] 3L_13638504_SNP [dm6]	T	G	1.617e^-4	0.954	INTRON bru-3
3L	13639794	3L_13639794_SNP [dm3] 3L_13646694_SNP [dm6]	C	T	1.618e^-4	0.954	INTRON bru-3
2L	18603697	2L_18603697_SNP [dm3] 2L_18603697_SNP [dm6]	G	A	1.635e^-4	0.954	INTRON CG10413
X	20149025	X_20149025_SNP [dm3] X_20277999_SNP [dm6]	G	A	1.642e^-4	0.954	INTERGENIC	insulator Insulator_Class_II.mE01
3R	25429917	3R_25429917_SNP [dm3] 3R_29604195_SNP [dm6]	T	G	1.649e^-4	0.954	INTRON alph
2R	14883273	2R_14883273_SNP [dm3] 2R_18995768_SNP [dm6]	G	A	1.657e^-4	0.954	DOWNSTREAM snoRNA:abba-a INTRON tn
3L	1132262	3L_1132262_SNP [dm3] 3L_1132262_SNP [dm6]	G	A	1.675e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs
2L	7408621	2L_7408621_SNP [dm3] 2L_7408621_SNP [dm6]	T	A	1.679e^-4	0.954	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
3R	11244705	3R_11244705_SNP [dm3] 3R_15418983_SNP [dm6]	G	T	1.706e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	9093546	X_9093546_SNP [dm3] X_9199513_SNP [dm6]	G	A	1.713e^-4	0.954	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17758184	2R_17758184_SNP [dm3] 2R_21870679_SNP [dm6]	C	A	1.722e^-4	0.954	INTERGENIC
2L	7235478	2L_7235478_SNP [dm3] 2L_7235478_SNP [dm6]	A	G	1.728e^-4	0.954	INTRON Ndae1
3R	20815625	3R_20815625_SNP [dm3] 3R_24989903_SNP [dm6]	G	T	1.730e^-4	0.954	INTRON tnc
3L	6079953	3L_6079953_SNP [dm3] 3L_6086853_SNP [dm6]	T	C	1.750e^-4	0.954	INTRON CG13293
3L	16929536	3L_16929536_SNP [dm3] 3L_16936436_SNP [dm6]	A	G	1.751e^-4	0.954	UPSTREAM CG11905 INTERGENIC
3L	11181466	3L_11181466_SNP [dm3] 3L_11188366_SNP [dm6]	A	G	1.751e^-4	0.954	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	5130915	2L_5130915_SNP [dm3] 2L_5130915_SNP [dm6]	G	A	1.772e^-4	0.954	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9538823	3R_9538823_SNP [dm3] 3R_13713101_SNP [dm6]	C	A	1.782e^-4	0.954	EXON CR34044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20861859	3R_20861859_SNP [dm3] 3R_25036137_SNP [dm6]	G	A	1.788e^-4	0.954	SYNONYMOUS_CODING CG6422 UPSTREAM CG31115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20601250	3R_20601250_SNP [dm3] 3R_24775528_SNP [dm6]	G	A	1.793e^-4	0.954	INTRON CG42331	TF binding site mE1_TFBS_cad
3L	19962531	3L_19962531_SNP [dm3] 3L_19969431_SNP [dm6]	G	A	1.811e^-4	0.954	INTRON Ac76E
3R	11004613	3R_11004613_SNP [dm3] 3R_15178891_SNP [dm6]	G	A	1.824e^-4	0.954	INTRON Gyc88E & 1 other
2L	2495800	2L_2495800_SNP [dm3] 2L_2495800_SNP [dm6]	C	A	1.834e^-4	0.954	SYNONYMOUS_CODING oaf
3L	2781234	3L_2781234_SNP [dm3] 3L_2781234_SNP [dm6]	G	C	1.834e^-4	0.954	NON_SYNONYMOUS_CODING mRpS35 DOWNSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_ttk
2L	15084985	2L_15084985_SNP [dm3] 2L_15084985_SNP [dm6]	A	T	1.837e^-4	0.954	INTRON CG15270
X	11072035	X_11072035_SNP [dm3] X_11178002_SNP [dm6]	T	G	1.845e^-4	0.954	INTERGENIC
2L	1731261	2L_1731261_SNP [dm3] 2L_1731261_SNP [dm6]	A	C	1.847e^-4	0.954	UTR_3_PRIME CG17652 DOWNSTREAM CG17652 & 1 other
2L	7432952	2L_7432952_SNP [dm3] 2L_7432952_SNP [dm6]	T	C	1.847e^-4	0.954	SYNONYMOUS_CODING CG5958
3R	12136326	3R_12136326_SNP [dm3] 3R_16310604_SNP [dm6]	C	T	1.851e^-4	0.954	UTR_3_PRIME Sulf1
2R	18698276	2R_18698276_SNP [dm3] 2R_22810771_SNP [dm6]	C	T	1.852e^-4	0.954	INTRON stl
X	20928257	X_20928257_SNP [dm3] X_21057230_SNP [dm6]	C	A	1.853e^-4	0.954	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	18833743	2L_18833743_DEL [dm3] 2L_18833743_DEL [dm6]	TAA	T	1.860e^-4	0.954	UTR_3_PRIME CG10600 DOWNSTREAM ScpX
3L	15801249	3L_15801249_SNP [dm3] 3L_15808149_SNP [dm6]	A	T	1.867e^-4	0.954	UPSTREAM CG6244 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19957640	3L_19957640_SNP [dm3] 3L_19964540_SNP [dm6]	G	A	1.872e^-4	0.954	INTRON Ac76E
X	5868224	X_5868224_DEL [dm3] X_5974191_DEL [dm6]	TCCCTGAT	T	1.874e^-4	0.954	INTRON Grip	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	7680076	2R_7680076_SNP [dm3] 2R_11792571_SNP [dm6]	C	T	1.875e^-4	0.954	INTRON ths	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20928133	X_20928133_DEL [dm3] X_21057106_DEL [dm6]	ATCGGAAGTCCAA...	A	1.881e^-4	0.954	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	20928177	X_20928177_SNP [dm3] X_21057150_SNP [dm6]	G	T	1.885e^-4	0.954	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	14615632	3L_14615632_SNP [dm3] 3L_14622532_SNP [dm6]	T	C	1.891e^-4	0.954	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
X	13227458	X_13227458_SNP [dm3] X_13333425_SNP [dm6]	A	C	1.896e^-4	0.954	INTERGENIC
3L	6895881	3L_6895881_SNP [dm3] 3L_6902781_SNP [dm6]	G	A	1.898e^-4	0.954	INTERGENIC
2R	7642972	2R_7642972_SNP [dm3] 2R_11755467_SNP [dm6]	C	G	1.913e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	12938684	3R_12938684_SNP [dm3] 3R_17112962_SNP [dm6]	T	A	1.917e^-4	0.954	INTRON cher	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	7635133	3L_7635133_SNP [dm3] 3L_7642033_SNP [dm6]	G	A	1.919e^-4	0.954	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18741753	2R_18741753_SNP [dm3] 2R_22854230_SNP [dm6]	T	C	1.919e^-4	0.954	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	16553130	2L_16553130_SNP [dm3] 2L_16553130_SNP [dm6]	G	T	1.921e^-4	0.954	INTRON CG42389
2R	3264542	2R_3264542_SNP [dm3] 2R_7377037_SNP [dm6]	A	G	1.922e^-4	0.954	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18572163	2R_18572163_SNP [dm3] 2R_22684658_SNP [dm6]	T	G	1.924e^-4	0.954	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9507246	3L_9507246_SNP [dm3] 3L_9514146_SNP [dm6]	C	A	1.929e^-4	0.954	UTR_3_PRIME CG33700 UPSTREAM CG33702 & 1 other
3L	7272584	3L_7272584_SNP [dm3] 3L_7279484_SNP [dm6]	A	G	1.939e^-4	0.954	INTRON unc-13-4A
2L	12726380	2L_12726380_SNP [dm3] 2L_12726380_SNP [dm6]	T	C	1.940e^-4	0.954	SYNONYMOUS_CODING MRP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3803010	3L_3803010_SNP [dm3] 3L_3803010_SNP [dm6]	G	A	1.948e^-4	0.954	DOWNSTREAM ntc INTRON CG32264
3L	7635112	3L_7635112_SNP [dm3] 3L_7642012_SNP [dm6]	C	T	1.949e^-4	0.954	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10167431	3L_10167431_SNP [dm3] 3L_10174331_SNP [dm6]	T	A	1.974e^-4	0.954	INTRON dpr10
2R	18698177	2R_18698177_SNP [dm3] 2R_22810672_SNP [dm6]	A	C	1.983e^-4	0.954	INTRON stl	TF binding site BDTNP1_TFBS_twi
3L	5853126	3L_5853126_SNP [dm3] 3L_5860026_SNP [dm6]	A	T	1.986e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	1264568	3L_1264568_SNP [dm3] 3L_1264568_SNP [dm6]	A	G	1.997e^-4	0.954	INTRON CG9134
2L	556998	2L_556998_SNP [dm3] 2L_556998_SNP [dm6]	G	A	2.001e^-4	0.954	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	9639453	3R_9639453_SNP [dm3] 3R_13813731_SNP [dm6]	T	G	2.004e^-4	0.954	START_GAINED tal-3A & 1 other UTR_5_PRIME tal-3A & 1 other UTR_3_PRIME tal-1A & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	14603151	3L_14603151_SNP [dm3] 3L_14610051_SNP [dm6]	T	A	2.010e^-4	0.954	INTERGENIC
3L	14603152	3L_14603152_SNP [dm3] 3L_14610052_SNP [dm6]	A	C	2.010e^-4	0.954	INTERGENIC
3R	19320787	3R_19320787_SNP [dm3] 3R_23495065_SNP [dm6]	C	T	2.024e^-4	0.954	INTERGENIC
3R	8346482	3R_8346482_SNP [dm3] 3R_12520760_SNP [dm6]	C	T	2.025e^-4	0.954	INTRON Octbeta3R
2R	19550990	2R_19550990_SNP [dm3] 2R_23663467_SNP [dm6]	G	A	2.035e^-4	0.954	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22829028	3R_22829028_SNP [dm3] 3R_27003306_SNP [dm6]	G	A	2.036e^-4	0.954	UTR_3_PRIME CG6296 DOWNSTREAM CG31077 INTRON RYa-R
2L	12726382	2L_12726382_SNP [dm3] 2L_12726382_SNP [dm6]	G	C	2.047e^-4	0.954	NON_SYNONYMOUS_CODING MRP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8576597	3L_8576597_SNP [dm3] 3L_8583497_SNP [dm6]	C	T	2.052e^-4	0.954	UPSTREAM CG43078 INTRON CG43078
3R	11304005	3R_11304005_SNP [dm3] 3R_15478283_SNP [dm6]	T	C	2.054e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2400853	3L_2400853_SNP [dm3] 3L_2400853_SNP [dm6]	G	T	2.054e^-4	0.954	INTRON CG45186
2R	11249654	2R_11249654_SNP [dm3] 2R_15362149_SNP [dm6]	C	T	2.056e^-4	0.954	SYNONYMOUS_CODING unc-5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14477720	3L_14477720_SNP [dm3] 3L_14484620_SNP [dm6]	G	A	2.057e^-4	0.954	INTRON bbg
X	3159566	X_3159566_SNP [dm3] X_3265533_SNP [dm6]	C	A	2.058e^-4	0.954	INTRON dnc
3R	17754736	3R_17754736_SNP [dm3] 3R_21929014_SNP [dm6]	T	A	2.065e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	11002221	3R_11002221_SNP [dm3] 3R_15176499_SNP [dm6]	A	G	2.072e^-4	0.954	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3L	12475274	3L_12475274_SNP [dm3] 3L_12482174_SNP [dm6]	G	A	2.072e^-4	0.954	UPSTREAM CG33725 INTRON CG10663
3R	2374296	3R_2374296_SNP [dm3] 3R_6548574_SNP [dm6]	A	G	2.072e^-4	0.954	UPSTREAM Pif2 INTRON dpr11
3R	14832728	3R_14832728_SNP [dm3] 3R_19007006_SNP [dm6]	C	A	2.080e^-4	0.954	INTRON gukh
3R	25837369	3R_25837369_SNP [dm3] 3R_30011647_SNP [dm6]	A	T	2.081e^-4	0.954	INTRON CG7920	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18698175	2R_18698175_SNP [dm3] 2R_22810670_SNP [dm6]	A	T	2.086e^-4	0.954	INTRON stl	TF binding site BDTNP1_TFBS_twi
2R	18651030	2R_18651030_SNP [dm3] 2R_22763525_SNP [dm6]	T	G	2.088e^-4	0.954	UPSTREAM CG13527 INTRON CG42260
2R	8801640	2R_8801640_SNP [dm3] 2R_12914135_SNP [dm6]	C	G	2.096e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	14899269	3R_14899269_SNP [dm3] 3R_19073547_SNP [dm6]	G	A	2.104e^-4	0.954	INTRON cdi	TF binding site mE1_TFBS_chinmo
3R	20125779	3R_20125779_SNP [dm3] 3R_24300057_SNP [dm6]	C	T	2.106e^-4	0.954	INTRON crb	TF binding site BDTNP1_TFBS_dl
2R	14883606	2R_14883606_SNP [dm3] 2R_18996101_SNP [dm6]	A	T	2.118e^-4	0.954	INTRON tn
2L	13631719	2L_13631719_SNP [dm3] 2L_13631719_SNP [dm6]	G	C	2.118e^-4	0.954	DOWNSTREAM CR43410 INTRON kuz
3R	15627022	3R_15627022_SNP [dm3] 3R_19801300_SNP [dm6]	C	G	2.135e^-4	0.954	INTRON bnl	TF binding site mE1_TFBS_inv
3L	1125720	3L_1125720_SNP [dm3] 3L_1125720_SNP [dm6]	G	A	2.151e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs
X	22155049	X_22155049_SNP [dm3] X_22753213_SNP [dm6]	G	A	2.158e^-4	0.954	INTRON CR44997
3R	23035426	3R_23035426_SNP [dm3] 3R_27209704_SNP [dm6]	C	T	2.161e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	5717234	2L_5717234_SNP [dm3] 2L_5717234_SNP [dm6]	A	G	2.163e^-4	0.954	UPSTREAM CG14007 DOWNSTREAM CR44818 & 1 other INTRON CG34011
3R	10037642	3R_10037642_SNP [dm3] 3R_14211920_SNP [dm6]	G	A	2.170e^-4	0.954	INTRON Dop1R1
3R	21030323	3R_21030323_SNP [dm3] 3R_25204601_SNP [dm6]	A	G	2.190e^-4	0.954	SYNONYMOUS_CODING Cad96Ca INTRON CG13654	TF binding site mE1_TFBS_cad
2R	18197000	2R_18197000_DEL [dm3] 2R_22309495_DEL [dm6]	CC	C	2.196e^-4	0.954	INTRON wdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14493160	2L_14493160_SNP [dm3] 2L_14493160_SNP [dm6]	A	G	2.198e^-4	0.954	SYNONYMOUS_STOP noc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13928058	3R_13928058_SNP [dm3] 3R_18102336_SNP [dm6]	G	A	2.199e^-4	0.954	INTRON sr
3L	17394270	3L_17394270_INS [dm3] 3L_17401170_INS [dm6]	G	GTG	2.200e^-4	0.954	FRAME_SHIFT noe INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	18206395	2R_18206395_SNP [dm3] 2R_22318890_SNP [dm6]	C	T	2.203e^-4	0.954	DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl mE1_TFBS_zfh1
3R	20122425	3R_20122425_SNP [dm3] 3R_24296703_SNP [dm6]	T	G	2.204e^-4	0.954	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_Trl
3L	14602995	3L_14602995_SNP [dm3] 3L_14609895_SNP [dm6]	G	A	2.209e^-4	0.954	INTERGENIC
3R	13943755	3R_13943755_SNP [dm3] 3R_18118033_SNP [dm6]	T	C	2.233e^-4	0.954	INTRON sr	TF binding site BDTNP1_TFBS_twi
2L	6302987	2L_6302987_SNP [dm3] 2L_6302987_SNP [dm6]	A	G	2.237e^-4	0.954	INTRON Ddr
X	8650730	X_8650730_SNP [dm3] X_8756697_SNP [dm6]	G	A	2.241e^-4	0.954	UTR_3_PRIME Lim1 DOWNSTREAM Lim1
2L	8401693	2L_8401693_SNP [dm3] 2L_8401693_SNP [dm6]	G	T	2.243e^-4	0.954	UTR_3_PRIME fy DOWNSTREAM CG31898
3R	14380812	3R_14380812_SNP [dm3] 3R_18555090_SNP [dm6]	T	C	2.250e^-4	0.954	INTERGENIC
2R	13719764	2R_13719764_INS [dm3] 2R_17832259_INS [dm6]	A	AAA	2.254e^-4	0.954	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21037388	3R_21037388_SNP [dm3] 3R_25211666_SNP [dm6]	A	G	2.256e^-4	0.954	SYNONYMOUS_CODING CG13654	TF binding site mE1_TFBS_cad
3R	23625839	3R_23625839_SNP [dm3] 3R_27800117_SNP [dm6]	G	T	2.271e^-4	0.954	INTRON CG34353
3L	18099093	3L_18099093_SNP [dm3] 3L_18105993_SNP [dm6]	A	T	2.278e^-4	0.954	UTR_5_PRIME CG13698 UPSTREAM mRpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9326312	X_9326312_DEL [dm3] X_9432279_DEL [dm6]	TGT	T	2.282e^-4	0.954	INTRON mgl
2R	7711962	2R_7711962_SNP [dm3] 2R_11824457_SNP [dm6]	T	A	2.282e^-4	0.954	UPSTREAM CG13192 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	24520951	3R_24520951_SNP [dm3] 3R_28695229_SNP [dm6]	A	C	2.284e^-4	0.954	UTR_3_PRIME CG9990	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2373021	X_2373021_INS [dm3] X_2478988_INS [dm6]	T	ATGAA	2.284e^-4	0.954	UTR_3_PRIME trol DOWNSTREAM trol INTRON trol
X	13797483	X_13797483_INS [dm3] X_13903450_INS [dm6]	C	CGGTTC	2.287e^-4	0.954	INTRON mamo
3R	19214545	3R_19214545_SNP [dm3] 3R_23388823_SNP [dm6]	A	T	2.297e^-4	0.954	NON_SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13035435	2L_13035435_SNP [dm3] 2L_13035435_SNP [dm6]	G	A	2.299e^-4	0.954	INTRON CG9932
2L	10534488	2L_10534488_SNP [dm3] 2L_10534488_SNP [dm6]	A	T	2.302e^-4	0.954	UTR_5_PRIME CG18302 DOWNSTREAM CG18301
2R	18737622	2R_18737622_SNP [dm3] 2R_22850099_SNP [dm6]	C	T	2.304e^-4	0.954	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad
3L	17949192	3L_17949192_SNP [dm3] 3L_17956092_SNP [dm6]	A	G	2.304e^-4	0.954	SYNONYMOUS_CODING Eip75B	TF binding site mE1_TFBS_cad
3R	20125579	3R_20125579_SNP [dm3] 3R_24299857_SNP [dm6]	T	G	2.308e^-4	0.954	INTRON crb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4912970	2L_4912970_SNP [dm3] 2L_4912970_SNP [dm6]	C	G	2.314e^-4	0.954	INTRON hoe1	TF binding site mE1_TFBS_sbb
3L	2359671	3L_2359671_SNP [dm3] 3L_2359671_SNP [dm6]	C	A	2.315e^-4	0.954	UPSTREAM CG13801 INTERGENIC
3R	17029158	3R_17029158_SNP [dm3] 3R_21203436_SNP [dm6]	A	T	2.316e^-4	0.954	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	2771405	3R_2771405_SNP [dm3] 3R_6945683_SNP [dm6]	G	T	2.330e^-4	0.954	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	20617604	3R_20617604_SNP [dm3] 3R_24791882_SNP [dm6]	C	T	2.331e^-4	0.954	UPSTREAM Ets96B INTRON Ets96B	TF binding site mE1_TFBS_chinmo
2L	7408752	2L_7408752_SNP [dm3] 2L_7408752_SNP [dm6]	T	A	2.338e^-4	0.954	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
3R	9674049	3R_9674049_SNP [dm3] 3R_13848327_SNP [dm6]	G	A	2.346e^-4	0.954	INTERGENIC
3R	18383813	3R_18383813_SNP [dm3] 3R_22558091_SNP [dm6]	A	T	2.349e^-4	0.954	DOWNSTREAM CG5278 INTERGENIC
3L	7307472	3L_7307472_SNP [dm3] 3L_7314372_SNP [dm6]	C	G	2.356e^-4	0.954	INTERGENIC
3R	12860063	3R_12860063_SNP [dm3] 3R_17034341_SNP [dm6]	A	G	2.362e^-4	0.954	DOWNSTREAM CG31268 INTRON CG4009	TF binding site mE1_TFBS_HSA
2R	18698179	2R_18698179_SNP [dm3] 2R_22810674_SNP [dm6]	T	A	2.366e^-4	0.954	INTRON stl	TF binding site BDTNP1_TFBS_twi
X	8735226	X_8735226_SNP [dm3] X_8841193_SNP [dm6]	T	C	2.367e^-4	0.954	INTRON CG12075
X	9834110	X_9834110_SNP [dm3] X_9940077_SNP [dm6]	T	C	2.378e^-4	0.954	INTERGENIC
3R	9676514	3R_9676514_SNP [dm3] 3R_13850792_SNP [dm6]	G	A	2.394e^-4	0.954	INTERGENIC
2R	8419868	2R_8419868_SNP [dm3] 2R_12532363_SNP [dm6]	T	G	2.396e^-4	0.954	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4403493	2L_4403493_SNP [dm3] 2L_4403493_SNP [dm6]	T	C	2.397e^-4	0.954	DOWNSTREAM CG15431 & 1 other INTRON Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7060903	2L_7060903_SNP [dm3] 2L_7060903_SNP [dm6]	A	C	2.403e^-4	0.954	UPSTREAM CG31907 INTRON Mnn1
X	22176897	X_22176897_SNP [dm3] X_22775061_SNP [dm6]	T	C	2.405e^-4	0.954	INTRON CR44997
3L	6979417	3L_6979417_SNP [dm3] 3L_6986317_SNP [dm6]	A	G	2.411e^-4	0.954	INTERGENIC
3R	14031205	3R_14031205_SNP [dm3] 3R_18205483_SNP [dm6]	A	T	2.412e^-4	0.954	INTRON CG7985
2R	19452151	2R_19452151_SNP [dm3] 2R_23564628_SNP [dm6]	C	T	2.416e^-4	0.954	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10138151	3L_10138151_SNP [dm3] 3L_10145051_SNP [dm6]	T	C	2.416e^-4	0.954	INTERGENIC
3R	11006915	3R_11006915_SNP [dm3] 3R_15181193_SNP [dm6]	G	T	2.416e^-4	0.954	UPSTREAM Mf INTRON Gyc88E & 1 other
3L	18731762	3L_18731762_SNP [dm3] 3L_18738662_SNP [dm6]	G	A	2.430e^-4	0.954	INTERGENIC
3R	21009927	3R_21009927_SNP [dm3] 3R_25184205_SNP [dm6]	G	A	2.436e^-4	0.954	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	20121922	3R_20121922_SNP [dm3] 3R_24296200_SNP [dm6]	A	G	2.437e^-4	0.954	INTRON crb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12344688	3L_12344688_SNP [dm3] 3L_12351588_SNP [dm6]	T	G	2.445e^-4	0.954	UPSTREAM CrzR INTERGENIC
3R	13148362	3R_13148362_SNP [dm3] 3R_17322640_SNP [dm6]	A	G	2.448e^-4	0.954	INTRON beat-IIa
3R	11005430	3R_11005430_SNP [dm3] 3R_15179708_SNP [dm6]	T	G	2.451e^-4	0.954	UPSTREAM Mf INTRON Gyc88E & 1 other
3R	9617860	3R_9617860_SNP [dm3] 3R_13792138_SNP [dm6]	A	C	2.453e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3264528	2R_3264528_SNP [dm3] 2R_7377023_SNP [dm6]	C	T	2.454e^-4	0.954	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9375466	2R_9375466_SNP [dm3] 2R_13487961_SNP [dm6]	T	A	2.462e^-4	0.954	INTRON bbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6650621	2L_6650621_SNP [dm3] 2L_6650621_SNP [dm6]	C	A	2.464e^-4	0.954	NON_SYNONYMOUS_CODING Tango1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	18024310	2R_18024310_SNP [dm3] 2R_22136805_SNP [dm6]	G	A	2.478e^-4	0.954	UPSTREAM a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	7762323	3R_7762323_SNP [dm3] 3R_11936601_SNP [dm6]	A	C	2.483e^-4	0.954	INTRON Cad87A
2R	11137578	2R_11137578_SNP [dm3] 2R_15250073_SNP [dm6]	A	T	2.488e^-4	0.954	INTRON scb	TF binding site mE1_TFBS_cad
3L	3590835	3L_3590835_SNP [dm3] 3L_3590835_SNP [dm6]	T	G	2.502e^-4	0.954	INTRON Eip63E
3L	14603035	3L_14603035_SNP [dm3] 3L_14609935_SNP [dm6]	A	C	2.504e^-4	0.954	INTERGENIC
2L	7790701	2L_7790701_SNP [dm3] 2L_7790701_SNP [dm6]	C	T	2.505e^-4	0.954	UPSTREAM CG7149 DOWNSTREAM LKR INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2361657	3L_2361657_SNP [dm3] 3L_2361657_SNP [dm6]	C	A	2.519e^-4	0.954	SYNONYMOUS_CODING CG13801	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1023724	2L_1023724_SNP [dm3] 2L_1023724_SNP [dm6]	C	T	2.519e^-4	0.954	INTRON IA-2
3R	8249773	3R_8249773_SNP [dm3] 3R_12424051_SNP [dm6]	C	G	2.523e^-4	0.954	UTR_3_PRIME Pp1-87B DOWNSTREAM CG17202	TF binding site mE1_TFBS_cad
2R	16868727	2R_16868727_SNP [dm3] 2R_20981222_SNP [dm6]	T	C	2.527e^-4	0.954	INTRON CG9313	TF binding site mE1_TFBS_cad
3R	7768136	3R_7768136_SNP [dm3] 3R_11942414_SNP [dm6]	A	G	2.528e^-4	0.954	INTRON Cad87A
3R	24501852	3R_24501852_SNP [dm3] 3R_28676130_SNP [dm6]	G	T	2.531e^-4	0.954	INTRON CG9990
2R	20419380	2R_20419380_DEL [dm3] 2R_24531857_DEL [dm6]	GTTTTGGTTCAATCGG...	G	2.534e^-4	0.954	UPSTREAM CG13585 & 1 other INTRON CG13585	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7784956	3L_7784956_SNP [dm3] 3L_7791856_SNP [dm6]	A	T	2.535e^-4	0.954	INTRON CG32369
2L	18603464	2L_18603464_SNP [dm3] 2L_18603464_SNP [dm6]	C	A	2.536e^-4	0.954	INTRON CG10413
X	7871248	X_7871248_SNP [dm3] X_7977215_SNP [dm6]	A	T	2.537e^-4	0.954	INTRON sn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2429710	3R_2429710_SNP [dm3] 3R_6603988_SNP [dm6]	C	T	2.538e^-4	0.954	INTERGENIC
3R	11852780	3R_11852780_SNP [dm3] 3R_16027058_SNP [dm6]	T	G	2.544e^-4	0.954	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	11404641	3L_11404641_SNP [dm3] 3L_11411541_SNP [dm6]	C	A	2.553e^-4	0.954	INTERGENIC
2L	12726247	2L_12726247_SNP [dm3] 2L_12726247_SNP [dm6]	A	G	2.555e^-4	0.954	SYNONYMOUS_CODING MRP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26937590	3R_26937590_SNP [dm3] 3R_31111868_SNP [dm6]	T	C	2.560e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_inv
2L	16541496	2L_16541496_SNP [dm3] 2L_16541496_SNP [dm6]	A	G	2.563e^-4	0.954	INTERGENIC
X	4435880	X_4435880_SNP [dm3] X_4541847_SNP [dm6]	G	T	2.579e^-4	0.954	UPSTREAM CG3568 INTRON CR32773 & 1 other	TF binding site mE1_TFBS_HSA
2L	8649258	2L_8649258_SNP [dm3] 2L_8649258_SNP [dm6]	C	T	2.580e^-4	0.954	INTRON Sema-1a
3L	459803	3L_459803_SNP [dm3] 3L_459803_SNP [dm6]	G	C	2.606e^-4	0.954	INTRON klar
3R	13148379	3R_13148379_SNP [dm3] 3R_17322657_SNP [dm6]	A	G	2.610e^-4	0.954	INTRON beat-IIa
3L	12675678	3L_12675678_INS [dm3] 3L_12682578_INS [dm6]	G	GCG	2.611e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3719191	2L_3719191_SNP [dm3] 2L_3719191_SNP [dm6]	A	T	2.614e^-4	0.954	INTRON Shaw
3R	23035381	3R_23035381_SNP [dm3] 3R_27209659_SNP [dm6]	C	A	2.615e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21030252	3R_21030252_SNP [dm3] 3R_25204530_SNP [dm6]	A	C	2.618e^-4	0.954	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
X	7739255	X_7739255_SNP [dm3] X_7845222_SNP [dm6]	G	T	2.631e^-4	0.954	INTERGENIC
3L	7307498	3L_7307498_SNP [dm3] 3L_7314398_SNP [dm6]	A	G	2.636e^-4	0.954	INTERGENIC
2R	11110024	2R_11110024_SNP [dm3] 2R_15222519_SNP [dm6]	C	G	2.645e^-4	0.954	SYNONYMOUS_CODING CG8079 UTR_3_PRIME CG8079	TF binding site mE1_TFBS_HSA
3R	10837093	3R_10837093_SNP [dm3] 3R_15011371_SNP [dm6]	C	T	2.646e^-4	0.954	INTERGENIC
2R	18699510	2R_18699510_SNP [dm3] 2R_22812005_SNP [dm6]	G	T	2.646e^-4	0.954	INTRON stl	TF binding site mE1_TFBS_chinmo
2L	7408619	2L_7408619_SNP [dm3] 2L_7408619_SNP [dm6]	G	A	2.657e^-4	0.954	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
3R	13148567	3R_13148567_SNP [dm3] 3R_17322845_SNP [dm6]	T	C	2.658e^-4	0.954	INTRON beat-IIa
3L	12475285	3L_12475285_SNP [dm3] 3L_12482185_SNP [dm6]	C	G	2.676e^-4	0.954	UPSTREAM CG33725 INTRON CG10663
2L	7802611	2L_7802611_SNP [dm3] 2L_7802611_SNP [dm6]	A	G	2.684e^-4	0.954	NON_SYNONYMOUS_CODING cdc14 UTR_3_PRIME cdc14 DOWNSTREAM r2d2	TF binding site mE1_TFBS_cad
3L	14841384	3L_14841384_SNP [dm3] 3L_14848284_SNP [dm6]	T	C	2.684e^-4	0.954	INTRON CG17839
2L	11458720	2L_11458720_SNP [dm3] 2L_11458720_SNP [dm6]	G	C	2.689e^-4	0.954	INTERGENIC
2L	12266819	2L_12266819_SNP [dm3] 2L_12266819_SNP [dm6]	A	C	2.691e^-4	0.954	INTRON aret
X	13608849	X_13608849_SNP [dm3] X_13714816_SNP [dm6]	A	G	2.701e^-4	0.954	SPLICE_SITE_REGION NnaD DOWNSTREAM NnaD INTRON CG9940 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	14225031	2R_14225031_SNP [dm3] 2R_18337526_SNP [dm6]	A	G	2.701e^-4	0.954	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19488682	X_19488682_SNP [dm3] X_19594649_SNP [dm6]	T	C	2.701e^-4	0.954	NON_SYNONYMOUS_CODING CG14205
3R	6551989	3R_6551989_SNP [dm3] 3R_10726267_SNP [dm6]	T	C	2.705e^-4	0.954	INTERGENIC
2R	20052058	2R_20052058_SNP [dm3] 2R_24164535_SNP [dm6]	G	A	2.706e^-4	0.954	INTRON CG3328	TF binding site mE1_TFBS_chinmo
3L	13639793	3L_13639793_SNP [dm3] 3L_13646693_SNP [dm6]	C	T	2.708e^-4	0.954	INTRON bru-3
3L	15801289	3L_15801289_SNP [dm3] 3L_15808189_SNP [dm6]	G	A	2.713e^-4	0.954	UPSTREAM CG6244 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14380897	3R_14380897_SNP [dm3] 3R_18555175_SNP [dm6]	T	A	2.717e^-4	0.954	INTERGENIC
X	5971713	X_5971713_SNP [dm3] X_6077680_SNP [dm6]	T	G	2.718e^-4	0.954	UTR_5_PRIME CG4666 UPSTREAM CG4666
2L	12536192	2L_12536192_DEL [dm3] 2L_12536192_DEL [dm6]	TAGCATTTCAAATCC...	G	2.722e^-4	0.954	INTRON bun
2R	8480610	2R_8480610_SNP [dm3] 2R_12593105_SNP [dm6]	A	G	2.729e^-4	0.954	UPSTREAM Amph & 1 other DOWNSTREAM CR45279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22397749	3R_22397749_SNP [dm3] 3R_26572027_SNP [dm6]	C	A	2.731e^-4	0.954	INTRON scrib
2L	6542407	2L_6542407_SNP [dm3] 2L_6542407_SNP [dm6]	C	T	2.735e^-4	0.954	INTRON eya	TF binding site mE1_TFBS_Kr
2L	12726475	2L_12726475_SNP [dm3] 2L_12726475_SNP [dm6]	G	A	2.746e^-4	0.954	SYNONYMOUS_CODING MRP	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	2515731	3R_2515731_SNP [dm3] 3R_6690009_SNP [dm6]	G	A	2.751e^-4	0.954	SYNONYMOUS_CODING Ccp84Af DOWNSTREAM Ccp84Ae
X	14065943	X_14065943_SNP [dm3] X_14171910_SNP [dm6]	G	A	2.757e^-4	0.954	SYNONYMOUS_CODING betaNACtes1 DOWNSTREAM CG12480
3L	5853139	3L_5853139_SNP [dm3] 3L_5860039_SNP [dm6]	C	A	2.758e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	18200328	2R_18200328_DEL [dm3] 2R_22312823_DEL [dm6]	TCGCACTCGCCTTGTTTGTT...	T	2.773e^-4	0.954	UPSTREAM CR44758 & 1 other INTERGENIC
3R	2771501	3R_2771501_SNP [dm3] 3R_6945779_SNP [dm6]	C	T	2.785e^-4	0.954	INTRON Antp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18699204	2R_18699204_SNP [dm3] 2R_22811699_SNP [dm6]	A	T	2.785e^-4	0.954	INTRON stl
3L	18145695	3L_18145695_SNP [dm3] 3L_18152595_SNP [dm6]	G	C	2.789e^-4	0.954	INTRON CG7330
3R	7783385	3R_7783385_SNP [dm3] 3R_11957663_SNP [dm6]	A	T	2.814e^-4	0.954	UPSTREAM Hsp70Ab INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	13019301	3R_13019301_SNP [dm3] 3R_17193579_SNP [dm6]	G	C	2.826e^-4	0.954	INTRON Mur89F
3L	21475879	3L_21475879_SNP [dm3] 3L_21482779_SNP [dm6]	G	T	2.828e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	7795815	2L_7795815_SNP [dm3] 2L_7795815_SNP [dm6]	A	T	2.828e^-4	0.954	NON_SYNONYMOUS_CODING LKR UPSTREAM CR44825 DOWNSTREAM Herp
3R	18384118	3R_18384118_DEL [dm3] 3R_22558396_DEL [dm6]	TT	T	2.832e^-4	0.954	UTR_3_PRIME CG5278
2R	11786988	2R_11786988_SNP [dm3] 2R_15899483_SNP [dm6]	T	C	2.850e^-4	0.954	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12247700	3L_12247700_SNP [dm3] 3L_12254600_SNP [dm6]	G	A	2.857e^-4	0.954	INTRON app
2R	3179896	2R_3179896_SNP [dm3] 2R_7292391_SNP [dm6]	C	T	2.860e^-4	0.954	INTRON pwn	TF binding site mE1_TFBS_cad
3L	18113870	3L_18113870_SNP [dm3] 3L_18120770_SNP [dm6]	C	G	2.862e^-4	0.954	SYNONYMOUS_CODING CG7341 DOWNSTREAM CG42853	TF binding site mE1_TFBS_cad
3L	694705	3L_694705_SNP [dm3] 3L_694705_SNP [dm6]	T	C	2.863e^-4	0.954	SYNONYMOUS_CODING CG13894	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	19565128	X_19565128_SNP [dm3] X_19671095_SNP [dm6]	C	G	2.864e^-4	0.954	INTRON Zw	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	6792470	2R_6792470_SNP [dm3] 2R_10904965_SNP [dm6]	T	C	2.867e^-4	0.954	INTRON CG12943
3R	2795140	3R_2795140_SNP [dm3] 3R_6969418_SNP [dm6]	T	C	2.868e^-4	0.954	INTRON Antp	TF binding site mE1_TFBS_inv
X	5060404	X_5060404_SNP [dm3] X_5166371_SNP [dm6]	C	G	2.873e^-4	0.954	INTRON rg & 1 other
2R	14883286	2R_14883286_DEL [dm3] 2R_18995781_DEL [dm6]	ATAGGCTTGA	A	2.880e^-4	0.954	DOWNSTREAM snoRNA:abba-a INTRON tn
X	8622911	X_8622911_SNP [dm3] X_8728878_SNP [dm6]	A	G	2.884e^-4	0.954	INTERGENIC
2R	17236553	2R_17236553_SNP [dm3] 2R_21349048_SNP [dm6]	C	T	2.885e^-4	0.954	UTR_3_PRIME CG17974
3R	15761994	3R_15761994_SNP [dm3] 3R_19936272_SNP [dm6]	A	G	2.890e^-4	0.954	INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17029872	3R_17029872_SNP [dm3] 3R_21204150_SNP [dm6]	G	A	2.893e^-4	0.954	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23482010	3R_23482010_SNP [dm3] 3R_27656288_SNP [dm6]	G	C	2.894e^-4	0.954	SYNONYMOUS_CODING tau DOWNSTREAM Mlc1
2L	3721167	2L_3721167_SNP [dm3] 2L_3721167_SNP [dm6]	G	C	2.900e^-4	0.954	UPSTREAM Shaw INTRON Shaw
2L	7796927	2L_7796927_SNP [dm3] 2L_7796927_SNP [dm6]	C	T	2.900e^-4	0.954	UTR_3_PRIME Herp UPSTREAM LKR DOWNSTREAM CR44825	TF binding site mE1_TFBS_cad
3R	25810441	3R_25810441_SNP [dm3] 3R_29984719_SNP [dm6]	T	C	2.918e^-4	0.954	INTRON CG7896
3R	10037587	3R_10037587_SNP [dm3] 3R_14211865_SNP [dm6]	C	A	2.918e^-4	0.954	INTRON Dop1R1
X	11353885	X_11353885_DEL [dm3] X_11459852_DEL [dm6]	CGGCC	C	2.922e^-4	0.954	UTR_5_PRIME CG43155 DOWNSTREAM HP5
2R	3264527	2R_3264527_SNP [dm3] 2R_7377022_SNP [dm6]	C	T	2.923e^-4	0.954	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10910030	3R_10910030_SNP [dm3] 3R_15084308_SNP [dm6]	C	A	2.924e^-4	0.954	INTRON CG6966
2R	8419897	2R_8419897_SNP [dm3] 2R_12532392_SNP [dm6]	G	T	2.928e^-4	0.954	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5581329	X_5581329_SNP [dm3] X_5687296_SNP [dm6]	C	A	2.932e^-4	0.954	NON_SYNONYMOUS_CODING CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1724710	3L_1724710_SNP [dm3] 3L_1724710_SNP [dm6]	G	C	2.935e^-4	0.954	SYNONYMOUS_CODING CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	2756520	3R_2756520_SNP [dm3] 3R_6930798_SNP [dm6]	A	C	2.936e^-4	0.954	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2580215	3L_2580215_SNP [dm3] 3L_2580215_SNP [dm6]	C	T	2.957e^-4	0.954	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13193481	3L_13193481_SNP [dm3] 3L_13200381_SNP [dm6]	G	A	2.958e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	6897377	3L_6897377_SNP [dm3] 3L_6904277_SNP [dm6]	A	G	2.958e^-4	0.954	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11403953	X_11403953_SNP [dm3] X_11509920_SNP [dm6]	G	T	2.964e^-4	0.954	INTRON Drak
3R	26084874	3R_26084874_SNP [dm3] 3R_30259152_SNP [dm6]	G	C	2.972e^-4	0.954	INTERGENIC
X	3443400	X_3443400_SNP [dm3] X_3549367_SNP [dm6]	A	T	2.987e^-4	0.954	INTRON CG32791
2L	8654661	2L_8654661_DEL [dm3] 2L_8654661_DEL [dm6]	AGGACACTA	A	2.989e^-4	0.954	INTRON Sema-1a
3R	21030991	3R_21030991_SNP [dm3] 3R_25205269_SNP [dm6]	G	C	2.996e^-4	0.954	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
3R	20125588	3R_20125588_SNP [dm3] 3R_24299866_SNP [dm6]	G	T	2.997e^-4	0.954	INTRON crb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10073944	2R_10073944_SNP [dm3] 2R_14186439_SNP [dm6]	T	C	2.997e^-4	0.954	SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	22171447	X_22171447_SNP [dm3] X_22769611_SNP [dm6]	G	A	3.005e^-4	0.954	INTRON CR44997
3R	23952125	3R_23952125_SNP [dm3] 3R_28126403_SNP [dm6]	G	T	3.006e^-4	0.954	INTERGENIC
3R	23952128	3R_23952128_DEL [dm3] 3R_28126406_DEL [dm6]	TT	T	3.006e^-4	0.954	INTERGENIC
3R	23952136	3R_23952136_SNP [dm3] 3R_28126414_SNP [dm6]	A	G	3.006e^-4	0.954	INTERGENIC
3R	23952137	3R_23952137_INS [dm3] 3R_28126415_INS [dm6]	T	TA	3.006e^-4	0.954	INTERGENIC
3R	23952153	3R_23952153_SNP [dm3] 3R_28126431_SNP [dm6]	A	T	3.006e^-4	0.954	INTERGENIC
2R	19222177	2R_19222177_SNP [dm3] 2R_23334654_SNP [dm6]	T	C	3.007e^-4	0.954	INTERGENIC
X	9318056	X_9318056_SNP [dm3] X_9424023_SNP [dm6]	C	G	3.013e^-4	0.954	INTRON mgl
2L	6092880	2L_6092880_SNP [dm3] 2L_6092880_SNP [dm6]	A	G	3.022e^-4	0.954	INTRON Kr-h1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18205971	2R_18205971_SNP [dm3] 2R_22318466_SNP [dm6]	C	A	3.053e^-4	0.954	UTR_5_PRIME Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	15493721	3L_15493721_SNP [dm3] 3L_15500621_SNP [dm6]	A	C	3.054e^-4	0.954	UPSTREAM CG7272 DOWNSTREAM CG7275 INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	14380802	3R_14380802_SNP [dm3] 3R_18555080_SNP [dm6]	A	T	3.070e^-4	0.954	INTERGENIC
2R	13814923	2R_13814923_SNP [dm3] 2R_17927418_SNP [dm6]	G	A	3.085e^-4	0.954	DOWNSTREAM Elk INTERGENIC
2R	18558818	2R_18558818_SNP [dm3] 2R_22671313_SNP [dm6]	T	A	3.085e^-4	0.954	DOWNSTREAM CG13516 INTRON RYBP	TF binding site BDTNP1_TFBS_dl
X	7537029	X_7537029_SNP [dm3] X_7642996_SNP [dm6]	T	C	3.101e^-4	0.954	INTRON ct
3R	22962190	3R_22962190_SNP [dm3] 3R_27136468_SNP [dm6]	C	T	3.115e^-4	0.954	INTRON CG6051
3R	9673216	3R_9673216_SNP [dm3] 3R_13847494_SNP [dm6]	T	C	3.117e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19684219	2R_19684219_SNP [dm3] 2R_23796696_SNP [dm6]	A	G	3.118e^-4	0.954	INTRON CG9850	TF binding site mE1_TFBS_HSA
2R	10867616	2R_10867616_SNP [dm3] 2R_14980111_SNP [dm6]	C	A	3.126e^-4	0.954	UTR_3_PRIME ckn
2R	7453569	2R_7453569_SNP [dm3] 2R_11566064_SNP [dm6]	A	G	3.128e^-4	0.954	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2R	7711971	2R_7711971_SNP [dm3] 2R_11824466_SNP [dm6]	T	C	3.133e^-4	0.954	UPSTREAM CG13192 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23121638	3R_23121638_SNP [dm3] 3R_27295916_SNP [dm6]	G	A	3.133e^-4	0.954	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19214552	3R_19214552_SNP [dm3] 3R_23388830_SNP [dm6]	G	A	3.143e^-4	0.954	SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12089190	2L_12089190_SNP [dm3] 2L_12089190_SNP [dm6]	A	G	3.144e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18634096	2R_18634096_SNP [dm3] 2R_22746591_SNP [dm6]	G	T	3.145e^-4	0.954	INTRON CG42260
3L	16197151	3L_16197151_SNP [dm3] 3L_16204051_SNP [dm6]	T	C	3.154e^-4	0.954	INTERGENIC
3L	9104387	3L_9104387_SNP [dm3] 3L_9111287_SNP [dm6]	G	A	3.155e^-4	0.954	INTRON bol
3R	11002250	3R_11002250_SNP [dm3] 3R_15176528_SNP [dm6]	T	A	3.156e^-4	0.954	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3R	23798969	3R_23798969_DEL [dm3] 3R_27973247_DEL [dm6]	CTCA	C	3.169e^-4	0.954	INTRON betaTub97EF
3R	9614795	3R_9614795_SNP [dm3] 3R_13789073_SNP [dm6]	G	A	3.170e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16869546	2R_16869546_SNP [dm3] 2R_20982041_SNP [dm6]	T	C	3.178e^-4	0.954	SPLICE_SITE_REGION CG9313 INTRON CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9674086	3R_9674086_INS [dm3] 3R_13848364_INS [dm6]	T	TT	3.178e^-4	0.954	INTERGENIC
2R	18698165	2R_18698165_SNP [dm3] 2R_22810660_SNP [dm6]	C	A	3.179e^-4	0.954	INTRON stl	TF binding site BDTNP1_TFBS_twi
3R	20949243	3R_20949243_SNP [dm3] 3R_25123521_SNP [dm6]	T	G	3.186e^-4	0.954	UTR_5_PRIME vig2 UPSTREAM CG31510 & 1 other INTRON vig2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22243849	3R_22243849_SNP [dm3] 3R_26418127_SNP [dm6]	T	C	3.189e^-4	0.954	INTERGENIC
3L	11230711	3L_11230711_SNP [dm3] 3L_11237611_SNP [dm6]	G	A	3.210e^-4	0.954	EXON CR44718 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10675434	3R_10675434_SNP [dm3] 3R_14849712_SNP [dm6]	C	A	3.230e^-4	0.954	INTRON btsz
3L	12523866	3L_12523866_SNP [dm3] 3L_12530766_SNP [dm6]	C	G	3.231e^-4	0.954	SYNONYMOUS_CODING Tsf2 UPSTREAM nst	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7307488	3L_7307488_SNP [dm3] 3L_7314388_SNP [dm6]	G	A	3.232e^-4	0.954	INTERGENIC
2L	11012152	2L_11012152_DEL [dm3] 2L_11012152_DEL [dm6]	GTCATTAGAT	A	3.241e^-4	0.954	DOWNSTREAM dUTPase INTERGENIC
2R	4062538	2R_4062538_SNP [dm3] 2R_8175033_SNP [dm6]	C	G	3.242e^-4	0.954	INTRON LRP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	9149182	2R_9149182_SNP [dm3] 2R_13261677_SNP [dm6]	G	T	3.253e^-4	0.954	UPSTREAM CG42319 INTRON CG42319
3R	12132915	3R_12132915_SNP [dm3] 3R_16307193_SNP [dm6]	T	G	3.255e^-4	0.954	SYNONYMOUS_CODING Zip89B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15142226	2R_15142226_SNP [dm3] 2R_19254721_SNP [dm6]	A	T	3.263e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2284035	3L_2284035_SNP [dm3] 3L_2284035_SNP [dm6]	G	C	3.264e^-4	0.954	INTRON MsR2
3R	23952118	3R_23952118_SNP [dm3] 3R_28126396_SNP [dm6]	G	C	3.287e^-4	0.954	INTERGENIC
2R	16058892	2R_16058892_SNP [dm3] 2R_20171387_SNP [dm6]	T	A	3.293e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	13182157	3R_13182157_SNP [dm3] 3R_17356435_SNP [dm6]	G	C	3.305e^-4	0.954	INTRON beat-IIa
3R	2705887	3R_2705887_SNP [dm3] 3R_6880165_SNP [dm6]	A	T	3.309e^-4	0.954	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
2R	19455958	2R_19455958_SNP [dm3] 2R_23568435_SNP [dm6]	T	G	3.327e^-4	0.954	INTRON apt
3L	1381090	3L_1381090_SNP [dm3] 3L_1381090_SNP [dm6]	C	G	3.342e^-4	0.954	DOWNSTREAM tRNA:CR32328 & 1 other INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl
3L	12424956	3L_12424956_SNP [dm3] 3L_12431856_SNP [dm6]	C	A	3.342e^-4	0.954	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13814943	2R_13814943_SNP [dm3] 2R_17927438_SNP [dm6]	G	A	3.351e^-4	0.954	DOWNSTREAM Elk INTERGENIC
2L	1069057	2L_1069057_SNP [dm3] 2L_1069057_SNP [dm6]	G	T	3.352e^-4	0.954	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	18446556	X_18446556_SNP [dm3] X_18552523_SNP [dm6]	G	C	3.354e^-4	0.954	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2355518	3R_2355518_SNP [dm3] 3R_6529796_SNP [dm6]	G	C	3.357e^-4	0.954	UTR_3_PRIME dpr11 DOWNSTREAM dpr11
3R	11424539	3R_11424539_SNP [dm3] 3R_15598817_SNP [dm6]	T	C	3.361e^-4	0.954	INTERGENIC
2L	18603539	2L_18603539_SNP [dm3] 2L_18603539_SNP [dm6]	T	A	3.363e^-4	0.954	INTRON CG10413
3R	11003373	3R_11003373_SNP [dm3] 3R_15177651_SNP [dm6]	C	A	3.371e^-4	0.954	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
X	13836658	X_13836658_SNP [dm3] X_13942625_SNP [dm6]	G	C	3.389e^-4	0.954	INTRON mamo
2L	13290621	2L_13290621_SNP [dm3] 2L_13290621_SNP [dm6]	T	C	3.390e^-4	0.954	UTR_5_PRIME CG31729 UPSTREAM CG31729	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12316489	3L_12316489_SNP [dm3] 3L_12323389_SNP [dm6]	T	A	3.394e^-4	0.954	INTERGENIC
3L	12710967	3L_12710967_DEL [dm3] 3L_12717867_DEL [dm6]	ATTA	A	3.395e^-4	0.954	INTERGENIC
3L	6079982	3L_6079982_SNP [dm3] 3L_6086882_SNP [dm6]	C	A	3.397e^-4	0.954	INTRON CG13293
X	5113223	X_5113223_INS [dm3] X_5219190_INS [dm6]	A	ATA	3.400e^-4	0.954	INTRON CG15465 & 1 other
3L	15786554	3L_15786554_SNP [dm3] 3L_15793454_SNP [dm6]	A	G	3.403e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	4912996	2L_4912996_SNP [dm3] 2L_4912996_SNP [dm6]	A	G	3.422e^-4	0.954	INTRON hoe1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7111759	2L_7111759_SNP [dm3] 2L_7111759_SNP [dm6]	A	T	3.423e^-4	0.954	INTRON Pvf3
3L	10860626	3L_10860626_SNP [dm3] 3L_10867526_SNP [dm6]	G	T	3.425e^-4	0.954	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	23029257	3R_23029257_SNP [dm3] 3R_27203535_SNP [dm6]	G	C	3.435e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs
2R	14855377	2R_14855377_SNP [dm3] 2R_18967872_SNP [dm6]	A	G	3.436e^-4	0.954	INTERGENIC
2L	6167363	2L_6167363_SNP [dm3] 2L_6167363_SNP [dm6]	A	G	3.437e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22155099	X_22155099_SNP [dm3] X_22753263_SNP [dm6]	C	T	3.439e^-4	0.954	INTRON CR44997
2R	10680858	2R_10680858_SNP [dm3] 2R_14793353_SNP [dm6]	A	T	3.443e^-4	0.954	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	11199026	X_11199026_SNP [dm3] X_11304993_SNP [dm6]	T	C	3.443e^-4	0.954	INTERGENIC
3R	12777591	3R_12777591_SNP [dm3] 3R_16951869_SNP [dm6]	T	C	3.445e^-4	0.954	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9639048	2L_9639048_SNP [dm3] 2L_9639048_SNP [dm6]	G	T	3.472e^-4	0.954	INTRON Apoltp
2L	810633	2L_810633_SNP [dm3] 2L_810633_SNP [dm6]	T	C	3.474e^-4	0.954	START_GAINED Nnf1b UTR_5_PRIME Nnf1b UPSTREAM Dbp21E2
3R	6294504	3R_6294504_SNP [dm3] 3R_10468782_SNP [dm6]	T	A	3.484e^-4	0.954	INTERGENIC
X	13241097	X_13241097_SNP [dm3] X_13347064_SNP [dm6]	A	T	3.485e^-4	0.954	UPSTREAM CR45709 INTERGENIC
2R	9735843	2R_9735843_SNP [dm3] 2R_13848338_SNP [dm6]	G	T	3.487e^-4	0.954	NON_SYNONYMOUS_CODING CG30484
3L	7308642	3L_7308642_SNP [dm3] 3L_7315542_SNP [dm6]	G	A	3.489e^-4	0.954	INTERGENIC
3L	12327197	3L_12327197_SNP [dm3] 3L_12334097_SNP [dm6]	G	A	3.492e^-4	0.954	INTRON CG32105
2L	4518287	2L_4518287_SNP [dm3] 2L_4518287_SNP [dm6]	A	T	3.524e^-4	0.954	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9832123	2L_9832123_SNP [dm3] 2L_9832123_SNP [dm6]	G	T	3.532e^-4	0.954	INTRON nAChRalpha6
3R	11129081	3R_11129081_INS [dm3] 3R_15303359_INS [dm6]	G	GG	3.534e^-4	0.954	INTRON Tm1
2L	7111763	2L_7111763_SNP [dm3] 2L_7111763_SNP [dm6]	A	G	3.537e^-4	0.954	INTRON Pvf3
3R	7762214	3R_7762214_SNP [dm3] 3R_11936492_SNP [dm6]	T	A	3.541e^-4	0.954	INTRON Cad87A
2R	9453404	2R_9453404_SNP [dm3] 2R_13565899_SNP [dm6]	G	A	3.545e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	2712346	2L_2712346_SNP [dm3] 2L_2712346_SNP [dm6]	A	G	3.547e^-4	0.954	INTRON CG31690	TF binding site mE1_TFBS_chinmo
3R	19211205	3R_19211205_SNP [dm3] 3R_23385483_SNP [dm6]	A	G	3.549e^-4	0.954	UPSTREAM CG4393 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	21858614	3R_21858614_SNP [dm3] 3R_26032892_SNP [dm6]	C	G	3.561e^-4	0.954	UPSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14333003	3R_14333003_SNP [dm3] 3R_18507281_SNP [dm6]	G	T	3.561e^-4	0.954	UPSTREAM fru INTRON fru	TF binding site mE1_TFBS_HSA
2L	7235828	2L_7235828_DEL [dm3] 2L_7235828_DEL [dm6]	TATTCGATT	T	3.561e^-4	0.954	INTRON Ndae1	TF binding site mE1_TFBS_cad
3R	9626342	3R_9626342_DEL [dm3] 3R_13800620_DEL [dm6]	ATAAAA	A	3.577e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15061184	2R_15061184_SNP [dm3] 2R_19173679_SNP [dm6]	G	T	3.588e^-4	0.954	INTRON CG10737
2L	7408755	2L_7408755_SNP [dm3] 2L_7408755_SNP [dm6]	C	T	3.608e^-4	0.954	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
X	15172935	X_15172935_SNP [dm3] X_15278902_SNP [dm6]	A	G	3.608e^-4	0.954	INTERGENIC
2R	18572580	2R_18572580_SNP [dm3] 2R_22685075_SNP [dm6]	G	A	3.612e^-4	0.954	UTR_3_PRIME ppa DOWNSTREAM ppa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14832586	3R_14832586_INS [dm3] 3R_19006864_INS [dm6]	T	TT	3.627e^-4	0.954	INTRON gukh
2L	7800722	2L_7800722_SNP [dm3] 2L_7800722_SNP [dm6]	G	A	3.629e^-4	0.954	SPLICE_SITE_REGION r2d2 SYNONYMOUS_CODING r2d2 UPSTREAM Herp DOWNSTREAM cdc14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7555667	2L_7555667_SNP [dm3] 2L_7555667_SNP [dm6]	G	A	3.636e^-4	0.954	INTRON RapGAP1
2L	6092967	2L_6092967_SNP [dm3] 2L_6092967_SNP [dm6]	C	T	3.650e^-4	0.954	INTRON Kr-h1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9305435	2L_9305435_SNP [dm3] 2L_9305435_SNP [dm6]	C	T	3.655e^-4	0.954	UPSTREAM CR42844 INTERGENIC
2L	10066965	2L_10066965_SNP [dm3] 2L_10066965_SNP [dm6]	A	G	3.656e^-4	0.954	INTRON CG44153
3R	2808134	3R_2808134_SNP [dm3] 3R_6982412_SNP [dm6]	G	A	3.657e^-4	0.954	INTRON Antp
3R	26215159	3R_26215159_SNP [dm3] 3R_30389437_SNP [dm6]	G	A	3.686e^-4	0.954	NON_SYNONYMOUS_CODING Fer2LCH INTRON Fer2LCH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
2R	18635285	2R_18635285_SNP [dm3] 2R_22747780_SNP [dm6]	T	G	3.700e^-4	0.954	INTRON CG42260	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15226131	2L_15226131_SNP [dm3] 2L_15226131_SNP [dm6]	T	C	3.734e^-4	0.954	INTERGENIC
2L	1990969	2L_1990969_INS [dm3] 2L_1990969_INS [dm6]	T	TTTGTTT	3.747e^-4	0.954	DOWNSTREAM Obp22a & 1 other INTERGENIC
3L	8083694	3L_8083694_SNP [dm3] 3L_8090594_SNP [dm6]	C	T	3.748e^-4	0.954	SYNONYMOUS_CODING CG7565 INTRON Ect4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	19127013	2R_19127013_SNP [dm3] 2R_23239490_SNP [dm6]	T	C	3.753e^-4	0.954	INTERGENIC
X	13609200	X_13609200_SNP [dm3] X_13715167_SNP [dm6]	A	T	3.756e^-4	0.954	SYNONYMOUS_CODING NnaD DOWNSTREAM NnaD INTRON CG9940 & 1 other	TF binding site mE1_TFBS_chinmo
3L	6899165	3L_6899165_SNP [dm3] 3L_6906065_SNP [dm6]	C	T	3.767e^-4	0.954	INTERGENIC
2R	5657509	2R_5657509_SNP [dm3] 2R_9770004_SNP [dm6]	C	G	3.774e^-4	0.954	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13505435	2R_13505435_INS [dm3] 2R_17617930_INS [dm6]	C	CAC	3.775e^-4	0.954	UPSTREAM CG44403 INTRON CG10936
2R	9152755	2R_9152755_SNP [dm3] 2R_13265250_SNP [dm6]	A	T	3.778e^-4	0.954	DOWNSTREAM CG42319 INTRON CG42319
3R	9655187	3R_9655187_SNP [dm3] 3R_13829465_SNP [dm6]	A	C	3.792e^-4	0.954	INTERGENIC
3R	9637273	3R_9637273_SNP [dm3] 3R_13811551_SNP [dm6]	T	C	3.792e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15687328	3L_15687328_SNP [dm3] 3L_15694228_SNP [dm6]	T	A	3.793e^-4	0.954	INTERGENIC
3L	15678690	3L_15678690_SNP [dm3] 3L_15685590_SNP [dm6]	A	T	3.815e^-4	0.954	DOWNSTREAM CG34452 INTRON pgant8	TF binding site mE1_TFBS_inv
X	6125031	X_6125031_SNP [dm3] X_6230998_SNP [dm6]	T	C	3.825e^-4	0.954	INTRON CG14446	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	2704377	3R_2704377_SNP [dm3] 3R_6878655_SNP [dm6]	C	A	3.836e^-4	0.954	INTRON CR44931	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	2706525	2L_2706525_SNP [dm3] 2L_2706525_SNP [dm6]	C	A	3.853e^-4	0.954	INTRON CG31690
3R	14031030	3R_14031030_SNP [dm3] 3R_18205308_SNP [dm6]	A	G	3.853e^-4	0.954	INTRON CG7985
2R	4216491	2R_4216491_SNP [dm3] 2R_8328986_SNP [dm6]	T	C	3.856e^-4	0.954	INTRON pdm3
3L	15688754	3L_15688754_SNP [dm3] 3L_15695654_SNP [dm6]	A	G	3.896e^-4	0.954	INTERGENIC
3R	14945561	3R_14945561_SNP [dm3] 3R_19119839_SNP [dm6]	G	T	3.900e^-4	0.954	INTRON CG6040
3L	6893984	3L_6893984_SNP [dm3] 3L_6900884_SNP [dm6]	C	A	3.905e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	17373269	3L_17373269_SNP [dm3] 3L_17380169_SNP [dm6]	G	A	3.907e^-4	0.954	UTR_3_PRIME CG13728 UPSTREAM Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	2363676	3R_2363676_SNP [dm3] 3R_6537954_SNP [dm6]	C	T	3.909e^-4	0.954	INTRON dpr11
3L	14814123	3L_14814123_SNP [dm3] 3L_14821023_SNP [dm6]	G	T	3.910e^-4	0.954	INTRON CG17839
2L	15429802	2L_15429802_SNP [dm3] 2L_15429802_SNP [dm6]	G	C	3.917e^-4	0.954	INTERGENIC
3L	19960155	3L_19960155_SNP [dm3] 3L_19967055_SNP [dm6]	G	A	3.917e^-4	0.954	INTRON Ac76E
3R	18562437	3R_18562437_SNP [dm3] 3R_22736715_SNP [dm6]	C	T	3.928e^-4	0.954	INTRON Dcr-1
2R	18741455	2R_18741455_SNP [dm3] 2R_22853932_SNP [dm6]	G	T	3.930e^-4	0.954	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19455945	2R_19455945_SNP [dm3] 2R_23568422_SNP [dm6]	A	G	3.937e^-4	0.954	INTRON apt
2R	17319333	2R_17319333_SNP [dm3] 2R_21431828_SNP [dm6]	A	T	3.943e^-4	0.954	INTRON Sdc
3L	17370625	3L_17370625_SNP [dm3] 3L_17377525_SNP [dm6]	T	A	3.944e^-4	0.954	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	8470913	X_8470913_SNP [dm3] X_8576880_SNP [dm6]	T	A	3.944e^-4	0.954	INTRON CG12065
3R	2661718	3R_2661718_SNP [dm3] 3R_6835996_SNP [dm6]	C	T	3.946e^-4	0.954	INTRON Scr	regulatory region REDfly_CRMs
2R	11704774	2R_11704774_SNP [dm3] 2R_15817269_SNP [dm6]	A	C	3.947e^-4	0.954	UPSTREAM Zasp52 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	4522090	3L_4522090_SNP [dm3] 3L_4522090_SNP [dm6]	G	A	3.963e^-4	0.954	INTRON Tie
2R	16812438	2R_16812438_SNP [dm3] 2R_20924933_SNP [dm6]	A	T	3.965e^-4	0.954	INTRON Rx
3L	4387788	3L_4387788_SNP [dm3] 3L_4387788_SNP [dm6]	A	G	3.966e^-4	0.954	INTRON slow
2L	1731154	2L_1731154_SNP [dm3] 2L_1731154_SNP [dm6]	A	C	3.968e^-4	0.954	UTR_3_PRIME CG17652 DOWNSTREAM CG17652 & 1 other
3L	10860636	3L_10860636_SNP [dm3] 3L_10867536_SNP [dm6]	A	C	3.988e^-4	0.954	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8801627	2R_8801627_SNP [dm3] 2R_12914122_SNP [dm6]	A	C	3.989e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	6589159	3L_6589159_SNP [dm3] 3L_6596059_SNP [dm6]	C	G	4.001e^-4	0.954	SYNONYMOUS_CODING ndl
3L	11178271	3L_11178271_SNP [dm3] 3L_11185171_SNP [dm6]	A	T	4.004e^-4	0.954	INTRON GlcAT-P
2L	9681784	2L_9681784_SNP [dm3] 2L_9681784_SNP [dm6]	A	T	4.022e^-4	0.954	DOWNSTREAM Pka-C1 INTERGENIC
3R	20006836	3R_20006836_SNP [dm3] 3R_24181114_SNP [dm6]	A	C	4.030e^-4	0.954	UTR_3_PRIME CG13606 INTRON CG13606
2L	7788749	2L_7788749_SNP [dm3] 2L_7788749_SNP [dm6]	A	G	4.031e^-4	0.954	INTRON CG7149
3R	27407992	3R_27407992_SNP [dm3] 3R_31582270_SNP [dm6]	G	A	4.035e^-4	0.954	INTRON rod	TF binding site mE1_TFBS_sens
3L	22050094	3L_22050094_INS [dm3] 3L_22056994_INS [dm6]	A	AA	4.038e^-4	0.954	INTRON Oct-TyrR	TF binding site BDTNP1_TFBS_twi
2R	8801646	2R_8801646_SNP [dm3] 2R_12914141_SNP [dm6]	T	A	4.047e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	18698286	2R_18698286_SNP [dm3] 2R_22810781_SNP [dm6]	T	A	4.052e^-4	0.954	INTRON stl
3R	20617651	3R_20617651_SNP [dm3] 3R_24791929_SNP [dm6]	C	T	4.055e^-4	0.954	UPSTREAM Ets96B INTRON Ets96B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	885411	3L_885411_SNP [dm3] 3L_885411_SNP [dm6]	C	G	4.060e^-4	0.954	INTRON CG32479
2R	16131433	2R_16131433_SNP [dm3] 2R_20243928_SNP [dm6]	T	C	4.077e^-4	0.954	SYNONYMOUS_CODING CG11208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	15687285	3L_15687285_SNP [dm3] 3L_15694185_SNP [dm6]	G	C	4.079e^-4	0.954	INTERGENIC
2R	13814937	2R_13814937_SNP [dm3] 2R_17927432_SNP [dm6]	T	A	4.086e^-4	0.954	DOWNSTREAM Elk INTERGENIC
2R	11109994	2R_11109994_SNP [dm3] 2R_15222489_SNP [dm6]	T	C	4.094e^-4	0.954	SPLICE_SITE_REGION CG8079 INTRON CG8079	TF binding site mE1_TFBS_HSA
3R	14031038	3R_14031038_SNP [dm3] 3R_18205316_SNP [dm6]	G	A	4.106e^-4	0.954	INTRON CG7985
2R	7438838	2R_7438838_SNP [dm3] 2R_11551333_SNP [dm6]	T	G	4.108e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17737594	3R_17737594_SNP [dm3] 3R_21911872_SNP [dm6]	A	G	4.109e^-4	0.954	SYNONYMOUS_CODING CG6690
3R	10630735	3R_10630735_SNP [dm3] 3R_14805013_SNP [dm6]	A	T	4.110e^-4	0.954	UTR_3_PRIME btsz DOWNSTREAM CG14857
3R	4513790	3R_4513790_SNP [dm3] 3R_8688068_SNP [dm6]	T	G	4.126e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14811843	3L_14811843_SNP [dm3] 3L_14818743_SNP [dm6]	A	C	4.126e^-4	0.954	INTRON CG17839
3L	8756935	3L_8756935_SNP [dm3] 3L_8763835_SNP [dm6]	C	G	4.130e^-4	0.954	INTRON Fhos
X	11403955	X_11403955_SNP [dm3] X_11509922_SNP [dm6]	A	C	4.131e^-4	0.954	INTRON Drak
2L	18603579	2L_18603579_SNP [dm3] 2L_18603579_SNP [dm6]	C	T	4.136e^-4	0.954	INTRON CG10413
X	8327919	X_8327919_SNP [dm3] X_8433886_SNP [dm6]	C	A	4.138e^-4	0.954	UPSTREAM CG32712 DOWNSTREAM CG12125 & 1 other INTERGENIC
2L	7075869	2L_7075869_SNP [dm3] 2L_7075869_SNP [dm6]	T	A	4.140e^-4	0.954	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5221280	3R_5221280_SNP [dm3] 3R_9395558_SNP [dm6]	C	T	4.149e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	10736565	3L_10736565_SNP [dm3] 3L_10743465_SNP [dm6]	G	A	4.150e^-4	0.954	INTERGENIC
X	3979029	X_3979029_SNP [dm3] X_4084996_SNP [dm6]	G	A	4.153e^-4	0.954	SYNONYMOUS_CODING CG43689
3R	8047299	3R_8047299_SNP [dm3] 3R_12221577_SNP [dm6]	A	G	4.176e^-4	0.954	UPSTREAM CG10014 & 1 other INTERGENIC
3R	14031397	3R_14031397_SNP [dm3] 3R_18205675_SNP [dm6]	A	G	4.183e^-4	0.954	INTRON CG7985
2L	4570471	2L_4570471_SNP [dm3] 2L_4570471_SNP [dm6]	T	C	4.185e^-4	0.954	SPLICE_SITE_REGION dp INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10666702	2R_10666702_SNP [dm3] 2R_14779197_SNP [dm6]	C	G	4.190e^-4	0.954	INTRON kn
4	305857	4_305857_SNP [dm3] 4_285231_SNP [dm6]	C	T	4.190e^-4	0.954	INTRON Syt7	transposable element FlyBase
2L	17711537	2L_17711537_SNP [dm3] 2L_17711537_SNP [dm6]	G	T	4.200e^-4	0.954	INTRON CadN
X	8208722	X_8208722_SNP [dm3] X_8314689_SNP [dm6]	A	C	4.202e^-4	0.954	INTRON nAChRalpha3
3R	9623169	3R_9623169_SNP [dm3] 3R_13797447_SNP [dm6]	T	G	4.225e^-4	0.954	UPSTREAM tRNA:CR31588 DOWNSTREAM tRNA:CR31331 INTERGENIC	silencer mE1_HDAC_PRE
3R	9623213	3R_9623213_SNP [dm3] 3R_13797491_SNP [dm6]	G	C	4.225e^-4	0.954	UPSTREAM tRNA:CR31588 DOWNSTREAM tRNA:CR31331 INTERGENIC	silencer mE1_HDAC_PRE
2R	14439953	2R_14439953_SNP [dm3] 2R_18552448_SNP [dm6]	A	G	4.227e^-4	0.954	INTERGENIC
3L	9135309	3L_9135309_SNP [dm3] 3L_9142209_SNP [dm6]	T	A	4.232e^-4	0.954	DOWNSTREAM nwk INTRON nwk
3L	5853455	3L_5853455_SNP [dm3] 3L_5860355_SNP [dm6]	C	T	4.236e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	12114803	2R_12114803_SNP [dm3] 2R_16227298_SNP [dm6]	C	T	4.236e^-4	0.954	INTRON CG15706 & 1 other
3L	10860631	3L_10860631_SNP [dm3] 3L_10867531_SNP [dm6]	G	C	4.236e^-4	0.954	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	9674047	3R_9674047_SNP [dm3] 3R_13848325_SNP [dm6]	A	G	4.242e^-4	0.954	INTERGENIC
3R	13728576	3R_13728576_SNP [dm3] 3R_17902854_SNP [dm6]	T	C	4.244e^-4	0.954	INTRON Rim	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18199358	2R_18199358_SNP [dm3] 2R_22311853_SNP [dm6]	C	G	4.257e^-4	0.954	UTR_5_PRIME wdp UPSTREAM wdp	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7408749	2L_7408749_INS [dm3] 2L_7408749_INS [dm6]	C	CTT	4.261e^-4	0.954	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
2R	10861433	2R_10861433_SNP [dm3] 2R_14973928_SNP [dm6]	A	G	4.265e^-4	0.954	INTRON ckn
3R	23120747	3R_23120747_SNP [dm3] 3R_27295025_SNP [dm6]	A	T	4.266e^-4	0.954	INTRON CG3339	TF binding site mE1_TFBS_HSA
3R	10675489	3R_10675489_SNP [dm3] 3R_14849767_SNP [dm6]	C	T	4.267e^-4	0.954	INTRON btsz
3R	14031259	3R_14031259_SNP [dm3] 3R_18205537_SNP [dm6]	T	A	4.267e^-4	0.954	INTRON CG7985
3R	16150407	3R_16150407_SNP [dm3] 3R_20324685_SNP [dm6]	G	T	4.279e^-4	0.954	UTR_3_PRIME CG4360 DOWNSTREAM CG42668
3R	16151016	3R_16151016_SNP [dm3] 3R_20325294_SNP [dm6]	T	A	4.279e^-4	0.954	UTR_3_PRIME CG4360
X	7315253	X_7315253_INS [dm3] X_7421220_INS [dm6]	T	TTA	4.284e^-4	0.954	INTRON CG9657
2R	14224944	2R_14224944_SNP [dm3] 2R_18337439_SNP [dm6]	G	A	4.286e^-4	0.954	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7760070	3R_7760070_SNP [dm3] 3R_11934348_SNP [dm6]	A	G	4.292e^-4	0.954	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14603048	3L_14603048_INS [dm3] 3L_14609948_INS [dm6]	T	TAT	4.299e^-4	0.954	INTERGENIC
3L	19966820	3L_19966820_SNP [dm3] 3L_19973720_SNP [dm6]	C	T	4.300e^-4	0.954	SYNONYMOUS_CODING Ac76E
3L	12133483	3L_12133483_SNP [dm3] 3L_12140383_SNP [dm6]	A	G	4.303e^-4	0.954	INTRON RhoGAP68F
X	22171442	X_22171442_SNP [dm3] X_22769606_SNP [dm6]	T	C	4.308e^-4	0.954	INTRON CR44997
3L	11182045	3L_11182045_INS [dm3] 3L_11188945_INS [dm6]	G	GAACGGCGGAG...	4.308e^-4	0.954	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11157444	2R_11157444_SNP [dm3] 2R_15269939_SNP [dm6]	C	T	4.316e^-4	0.954	INTRON Trpm
3L	11230752	3L_11230752_SNP [dm3] 3L_11237652_SNP [dm6]	A	T	4.324e^-4	0.954	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7604545	3R_7604545_SNP [dm3] 3R_11778823_SNP [dm6]	T	C	4.326e^-4	0.954	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3R	14031105	3R_14031105_SNP [dm3] 3R_18205383_SNP [dm6]	G	T	4.328e^-4	0.954	INTRON CG7985
3L	920537	3L_920537_SNP [dm3] 3L_920537_SNP [dm6]	T	G	4.338e^-4	0.954	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7882820	X_7882820_SNP [dm3] X_7988787_SNP [dm6]	A	T	4.343e^-4	0.954	INTERGENIC
3L	1105172	3L_1105172_SNP [dm3] 3L_1105172_SNP [dm6]	T	C	4.355e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1023698	2L_1023698_DEL [dm3] 2L_1023698_DEL [dm6]	TTTCTCCTCCAACATGTTGC...	T	4.357e^-4	0.954	INTRON IA-2
2L	12830694	2L_12830694_SNP [dm3] 2L_12830694_SNP [dm6]	C	T	4.362e^-4	0.954	INTERGENIC
3R	20861898	3R_20861898_SNP [dm3] 3R_25036176_SNP [dm6]	G	A	4.369e^-4	0.954	SYNONYMOUS_CODING CG6422 UPSTREAM CG31115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8324558	2L_8324558_INS [dm3] 2L_8324558_INS [dm6]	C	CTCCTGCT	4.370e^-4	0.954	INTRON CG7781
3L	11432280	3L_11432280_DEL [dm3] 3L_11439180_DEL [dm6]	GGGGCGAAGTA...	G	4.376e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15075628	X_15075628_SNP [dm3] X_15181595_SNP [dm6]	C	T	4.385e^-4	0.954	INTRON CG43737
3R	2268385	3R_2268385_SNP [dm3] 3R_6442663_SNP [dm6]	C	T	4.394e^-4	0.954	SYNONYMOUS_CODING gpp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12643657	3R_12643657_SNP [dm3] 3R_16817935_SNP [dm6]	G	C	4.395e^-4	0.954	INTRON abd-A	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13682248	3R_13682248_SNP [dm3] 3R_17856526_SNP [dm6]	G	C	4.397e^-4	0.954	INTRON tinc
2L	7354222	2L_7354222_SNP [dm3] 2L_7354222_SNP [dm6]	C	T	4.398e^-4	0.954	INTERGENIC
2L	4911563	2L_4911563_SNP [dm3] 2L_4911563_SNP [dm6]	A	T	4.399e^-4	0.954	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10583997	3R_10583997_SNP [dm3] 3R_14758275_SNP [dm6]	A	G	4.411e^-4	0.954	INTRON jvl
3R	14031106	3R_14031106_SNP [dm3] 3R_18205384_SNP [dm6]	T	A	4.411e^-4	0.954	INTRON CG7985
2R	14222429	2R_14222429_SNP [dm3] 2R_18334924_SNP [dm6]	T	G	4.412e^-4	0.954	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2361039	3L_2361039_SNP [dm3] 3L_2361039_SNP [dm6]	G	A	4.421e^-4	0.954	SYNONYMOUS_CODING CG13801
2R	17319332	2R_17319332_SNP [dm3] 2R_21431827_SNP [dm6]	C	A	4.421e^-4	0.954	INTRON Sdc
2L	11405538	2L_11405538_SNP [dm3] 2L_11405538_SNP [dm6]	G	A	4.427e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs
X	14745265	X_14745265_SNP [dm3] X_14851232_SNP [dm6]	T	G	4.437e^-4	0.954	UTR_3_PRIME CG9521 INTRON Flo2
3R	17754733	3R_17754733_SNP [dm3] 3R_21929011_SNP [dm6]	G	C	4.446e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	7408756	2L_7408756_SNP [dm3] 2L_7408756_SNP [dm6]	T	C	4.447e^-4	0.954	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
3R	11244382	3R_11244382_SNP [dm3] 3R_15418660_SNP [dm6]	G	A	4.468e^-4	0.954	UPSTREAM mir-2c INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	12726517	2L_12726517_SNP [dm3] 2L_12726517_SNP [dm6]	T	C	4.488e^-4	0.954	SYNONYMOUS_CODING MRP	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	19339424	2R_19339424_SNP [dm3] 2R_23451901_SNP [dm6]	T	C	4.493e^-4	0.954	INTRON CG43795
2R	14223000	2R_14223000_SNP [dm3] 2R_18335495_SNP [dm6]	G	A	4.496e^-4	0.954	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9389916	X_9389916_SNP [dm3] X_9495883_SNP [dm6]	A	G	4.499e^-4	0.954	UTR_5_PRIME mgl INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	14478148	3L_14478148_SNP [dm3] 3L_14485048_SNP [dm6]	T	C	4.499e^-4	0.954	INTRON bbg
2L	7235544	2L_7235544_SNP [dm3] 2L_7235544_SNP [dm6]	A	T	4.500e^-4	0.954	INTRON Ndae1
2L	7235553	2L_7235553_SNP [dm3] 2L_7235553_SNP [dm6]	T	A	4.500e^-4	0.954	INTRON Ndae1
3R	23338145	3R_23338145_SNP [dm3] 3R_27512423_SNP [dm6]	G	A	4.515e^-4	0.954	INTERGENIC
3R	14031254	3R_14031254_SNP [dm3] 3R_18205532_SNP [dm6]	A	G	4.519e^-4	0.954	INTRON CG7985
2L	10155132	2L_10155132_SNP [dm3] 2L_10155132_SNP [dm6]	C	T	4.534e^-4	0.954	SYNONYMOUS_CODING CG4839 INTRON CG44153
2R	17686907	2R_17686907_SNP [dm3] 2R_21799402_SNP [dm6]	C	T	4.535e^-4	0.954	UTR_3_PRIME CG4386 UPSTREAM CG18735
3R	9623163	3R_9623163_SNP [dm3] 3R_13797441_SNP [dm6]	C	G	4.536e^-4	0.954	UPSTREAM tRNA:CR31588 DOWNSTREAM tRNA:CR31331 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	12475243	3L_12475243_SNP [dm3] 3L_12482143_SNP [dm6]	C	G	4.536e^-4	0.954	UPSTREAM CG33725 INTRON CG10663
3R	21009921	3R_21009921_SNP [dm3] 3R_25184199_SNP [dm6]	C	A	4.542e^-4	0.954	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4912397	2L_4912397_SNP [dm3] 2L_4912397_SNP [dm6]	C	A	4.547e^-4	0.954	INTRON hoe1
2R	6873441	2R_6873441_SNP [dm3] 2R_10985936_SNP [dm6]	A	T	4.555e^-4	0.954	INTRON luna
3R	10982337	3R_10982337_SNP [dm3] 3R_15156615_SNP [dm6]	T	C	4.561e^-4	0.954	INTRON Gyc88E
3L	2281219	3L_2281219_SNP [dm3] 3L_2281219_SNP [dm6]	C	T	4.565e^-4	0.954	INTERGENIC
3R	21300058	3R_21300058_SNP [dm3] 3R_25474336_SNP [dm6]	G	A	4.567e^-4	0.954	SYNONYMOUS_CODING Vps33B
2R	18175209	2R_18175209_SNP [dm3] 2R_22287704_SNP [dm6]	A	G	4.570e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7800828	2L_7800828_SNP [dm3] 2L_7800828_SNP [dm6]	C	G	4.572e^-4	0.954	NON_SYNONYMOUS_CODING r2d2 UPSTREAM Herp DOWNSTREAM cdc14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1725247	3L_1725247_SNP [dm3] 3L_1725247_SNP [dm6]	A	G	4.574e^-4	0.954	SYNONYMOUS_CODING CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20906851	3R_20906851_SNP [dm3] 3R_25081129_SNP [dm6]	T	C	4.584e^-4	0.954	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13851637	3R_13851637_SNP [dm3] 3R_18025915_SNP [dm6]	T	A	4.593e^-4	0.954	DOWNSTREAM CG7794 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9685724	2R_9685724_SNP [dm3] 2R_13798219_SNP [dm6]	C	T	4.595e^-4	0.954	INTRON Cpr50Cb
3R	13676836	3R_13676836_SNP [dm3] 3R_17851114_SNP [dm6]	G	A	4.602e^-4	0.954	INTRON tinc
2L	12265113	2L_12265113_SNP [dm3] 2L_12265113_SNP [dm6]	G	A	4.609e^-4	0.954	INTRON aret
2L	7432698	2L_7432698_SNP [dm3] 2L_7432698_SNP [dm6]	G	C	4.612e^-4	0.954	INTRON CG5958
2R	9592058	2R_9592058_INS [dm3] 2R_13704553_INS [dm6]	T	TGGAGC	4.618e^-4	0.954	INTRON fas
3R	9599078	3R_9599078_SNP [dm3] 3R_13773356_SNP [dm6]	A	T	4.621e^-4	0.954	INTRON CG9297
3R	22904049	3R_22904049_DEL [dm3] 3R_27078327_DEL [dm6]	TT	T	4.624e^-4	0.954	INTRON CG14257
3R	17754726	3R_17754726_SNP [dm3] 3R_21929004_SNP [dm6]	A	G	4.625e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_z
X	13241095	X_13241095_SNP [dm3] X_13347062_SNP [dm6]	A	G	4.626e^-4	0.954	UPSTREAM CR45709 INTERGENIC
3L	613331	3L_613331_SNP [dm3] 3L_613331_SNP [dm6]	A	C	4.637e^-4	0.954	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2R	19236326	2R_19236326_SNP [dm3] 2R_23348803_SNP [dm6]	C	A	4.641e^-4	0.954	INTERGENIC
3L	19963863	3L_19963863_SNP [dm3] 3L_19970763_SNP [dm6]	T	G	4.645e^-4	0.954	INTRON Ac76E	TF binding site mE1_TFBS_chinmo
2L	3398070	2L_3398070_SNP [dm3] 2L_3398070_SNP [dm6]	T	C	4.647e^-4	0.954	UTR_5_PRIME CG34175 UPSTREAM CR44792
2L	7172374	2L_7172374_SNP [dm3] 2L_7172374_SNP [dm6]	A	C	4.656e^-4	0.954	INTERGENIC
3L	16388787	3L_16388787_SNP [dm3] 3L_16395687_SNP [dm6]	C	G	4.657e^-4	0.954	SYNONYMOUS_CODING Grp INTRON CG44836
X	18173928	X_18173928_SNP [dm3] X_18279895_SNP [dm6]	G	T	4.658e^-4	0.954	INTRON upd3	TF binding site mE1_TFBS_chinmo
3R	20121989	3R_20121989_DEL [dm3] 3R_24296267_DEL [dm6]	GTG	G	4.662e^-4	0.954	INTRON crb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14380985	3R_14380985_INS [dm3] 3R_18555263_INS [dm6]	T	TTT	4.666e^-4	0.954	INTERGENIC
3L	12716666	3L_12716666_SNP [dm3] 3L_12723566_SNP [dm6]	A	C	4.670e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14425021	2R_14425021_SNP [dm3] 2R_18537516_SNP [dm6]	C	G	4.675e^-4	0.954	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9424063	X_9424063_SNP [dm3] X_9530030_SNP [dm6]	G	A	4.684e^-4	0.954	INTRON CG32700
3R	10374005	3R_10374005_SNP [dm3] 3R_14548283_SNP [dm6]	T	G	4.696e^-4	0.954	INTRON Pde6
2L	6092884	2L_6092884_DEL [dm3] 2L_6092884_DEL [dm6]	TCT	T	4.701e^-4	0.954	INTRON Kr-h1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6092897	2L_6092897_SNP [dm3] 2L_6092897_SNP [dm6]	C	T	4.701e^-4	0.954	INTRON Kr-h1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2253682	3L_2253682_SNP [dm3] 3L_2253682_SNP [dm6]	G	A	4.702e^-4	0.954	SYNONYMOUS_CODING CG1275 DOWNSTREAM CG32305	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10941978	2L_10941978_SNP [dm3] 2L_10941978_SNP [dm6]	G	C	4.704e^-4	0.954	DOWNSTREAM CR44492 INTRON dpr2
2L	17867650	2L_17867650_SNP [dm3] 2L_17867650_SNP [dm6]	T	G	4.713e^-4	0.954	INTRON CadN2
3R	10230879	3R_10230879_SNP [dm3] 3R_14405157_SNP [dm6]	G	A	4.716e^-4	0.954	START_GAINED cv-c UTR_5_PRIME cv-c INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2780900	3L_2780900_SNP [dm3] 3L_2780900_SNP [dm6]	G	T	4.723e^-4	0.954	UTR_5_PRIME mRpS35 DOWNSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
3L	14478159	3L_14478159_SNP [dm3] 3L_14485059_SNP [dm6]	T	C	4.724e^-4	0.954	INTRON bbg
3L	16212760	3L_16212760_SNP [dm3] 3L_16219660_SNP [dm6]	A	G	4.732e^-4	0.954	INTERGENIC
3R	27407950	3R_27407950_SNP [dm3] 3R_31582228_SNP [dm6]	C	A	4.735e^-4	0.954	INTRON rod	TF binding site mE1_TFBS_sens
3R	7340979	3R_7340979_SNP [dm3] 3R_11515257_SNP [dm6]	G	C	4.743e^-4	0.954	INTERGENIC
3R	9674036	3R_9674036_SNP [dm3] 3R_13848314_SNP [dm6]	T	A	4.748e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9152767	2R_9152767_SNP [dm3] 2R_13265262_SNP [dm6]	A	G	4.763e^-4	0.954	DOWNSTREAM CG42319 INTRON CG42319
2R	8475829	2R_8475829_SNP [dm3] 2R_12588324_SNP [dm6]	C	G	4.771e^-4	0.954	UPSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15757136	2R_15757136_SNP [dm3] 2R_19869631_SNP [dm6]	T	C	4.774e^-4	0.954	DOWNSTREAM Obp56i & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3L	16212751	3L_16212751_SNP [dm3] 3L_16219651_SNP [dm6]	C	T	4.783e^-4	0.954	INTERGENIC
2L	7136394	2L_7136394_SNP [dm3] 2L_7136394_SNP [dm6]	G	A	4.784e^-4	0.954	INTRON Pvf3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	519416	3L_519416_SNP [dm3] 3L_519416_SNP [dm6]	C	T	4.785e^-4	0.954	INTRON klar
3R	10293411	3R_10293411_SNP [dm3] 3R_14467689_SNP [dm6]	T	A	4.785e^-4	0.954	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23604446	3R_23604446_SNP [dm3] 3R_27778724_SNP [dm6]	C	T	4.786e^-4	0.954	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3R	18190085	3R_18190085_SNP [dm3] 3R_22364363_SNP [dm6]	G	A	4.787e^-4	0.954	SYNONYMOUS_CODING CG7071 UTR_3_PRIME Muted DOWNSTREAM CG5382
3L	18068066	3L_18068066_SNP [dm3] 3L_18074966_SNP [dm6]	T	A	4.796e^-4	0.954	EXON CR45391
2R	19354336	2R_19354336_SNP [dm3] 2R_23466813_SNP [dm6]	A	T	4.796e^-4	0.954	INTRON CG43795
3R	21498131	3R_21498131_SNP [dm3] 3R_25672409_SNP [dm6]	T	A	4.815e^-4	0.954	INTRON Lgr3
3L	13680340	3L_13680340_SNP [dm3] 3L_13687240_SNP [dm6]	A	G	4.820e^-4	0.954	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10860571	3L_10860571_SNP [dm3] 3L_10867471_SNP [dm6]	T	C	4.822e^-4	0.954	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14043478	3L_14043478_SNP [dm3] 3L_14050378_SNP [dm6]	A	C	4.831e^-4	0.954	UPSTREAM blue & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	4198842	3R_4198842_SNP [dm3] 3R_8373120_SNP [dm6]	T	C	4.835e^-4	0.954	INTRON CG45263	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13366039	X_13366039_SNP [dm3] X_13472006_SNP [dm6]	C	T	4.835e^-4	0.954	INTRON Neto
2L	3881864	2L_3881864_DEL [dm3] 2L_3881864_DEL [dm6]	AA	A	4.836e^-4	0.954	INTRON capu
3L	16012450	3L_16012450_SNP [dm3] 3L_16019350_SNP [dm6]	G	T	4.850e^-4	0.954	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15786578	3L_15786578_SNP [dm3] 3L_15793478_SNP [dm6]	T	C	4.859e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	19415959	2R_19415959_SNP [dm3] 2R_23528436_SNP [dm6]	G	A	4.862e^-4	0.954	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
3L	17095184	3L_17095184_SNP [dm3] 3L_17102084_SNP [dm6]	C	T	4.869e^-4	0.954	INTRON Rbp6
3L	12716676	3L_12716676_SNP [dm3] 3L_12723576_SNP [dm6]	G	A	4.873e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7751802	3R_7751802_SNP [dm3] 3R_11926080_SNP [dm6]	A	T	4.893e^-4	0.954	INTRON Cad87A
X	14744129	X_14744129_SNP [dm3] X_14850096_SNP [dm6]	G	A	4.898e^-4	0.954	DOWNSTREAM CG9521 INTRON Flo2
X	3276912	X_3276912_SNP [dm3] X_3382879_SNP [dm6]	T	A	4.916e^-4	0.954	INTRON dm & 1 other
2R	13116900	2R_13116900_SNP [dm3] 2R_17229395_SNP [dm6]	A	C	4.916e^-4	0.954	INTRON mbl
2R	9232254	2R_9232254_INS [dm3] 2R_13344749_INS [dm6]	C	CTAGC	4.920e^-4	0.954	INTRON CR44206
3L	13015880	3L_13015880_SNP [dm3] 3L_13022780_SNP [dm6]	C	T	4.920e^-4	0.954	UPSTREAM RpS12 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	5716933	X_5716933_SNP [dm3] X_5822900_SNP [dm6]	G	A	4.926e^-4	0.954	INTRON CG15765
3R	10557916	3R_10557916_DEL [dm3] 3R_14732194_DEL [dm6]	ACCGA	TTT	4.928e^-4	0.954	UPSTREAM CG7530 DOWNSTREAM eff INTERGENIC
3R	9617259	3R_9617259_SNP [dm3] 3R_13791537_SNP [dm6]	G	T	4.930e^-4	0.954	INTERGENIC
2L	556884	2L_556884_SNP [dm3] 2L_556884_SNP [dm6]	C	T	4.931e^-4	0.954	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	12717223	3L_12717223_SNP [dm3] 3L_12724123_SNP [dm6]	T	G	4.932e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11724878	3R_11724878_DEL [dm3] 3R_15899156_DEL [dm6]	GTCAAGC	G	4.934e^-4	0.954	INTRON glob1
2L	3881919	2L_3881919_SNP [dm3] 2L_3881919_SNP [dm6]	T	C	4.937e^-4	0.954	INTRON capu
3R	15462740	3R_15462740_SNP [dm3] 3R_19637018_SNP [dm6]	G	T	4.941e^-4	0.954	INTRON subdued
2R	18667330	2R_18667330_SNP [dm3] 2R_22779825_SNP [dm6]	T	C	4.942e^-4	0.954	INTRON CG42260
2L	11404797	2L_11404797_SNP [dm3] 2L_11404797_SNP [dm6]	A	G	4.943e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs
3L	7307474	3L_7307474_SNP [dm3] 3L_7314374_SNP [dm6]	T	A	4.948e^-4	0.954	INTERGENIC
3L	3270208	3L_3270208_SNP [dm3] 3L_3270208_SNP [dm6]	A	G	4.955e^-4	0.954	UPSTREAM CG14960 INTERGENIC
X	8504524	X_8504524_SNP [dm3] X_8610491_SNP [dm6]	A	G	4.957e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	13990069	2L_13990069_SNP [dm3] 2L_13990069_SNP [dm6]	A	G	4.968e^-4	0.954	INTRON rk
3L	9985216	3L_9985216_SNP [dm3] 3L_9992116_SNP [dm6]	C	A	4.973e^-4	0.954	INTRON dpr6
2L	12089057	2L_12089057_SNP [dm3] 2L_12089057_SNP [dm6]	C	T	4.974e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12336230	3L_12336230_SNP [dm3] 3L_12343130_SNP [dm6]	T	C	4.975e^-4	0.954	INTRON CrzR
3R	22112049	3R_22112049_SNP [dm3] 3R_26286327_SNP [dm6]	G	A	4.977e^-4	0.954	INTERGENIC
3R	23957821	3R_23957821_SNP [dm3] 3R_28132099_SNP [dm6]	A	T	4.997e^-4	0.954	INTERGENIC
2L	2482390	2L_2482390_SNP [dm3] 2L_2482390_SNP [dm6]	C	G	5.011e^-4	0.954	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3R	17030282	3R_17030282_SNP [dm3] 3R_21204560_SNP [dm6]	T	A	5.011e^-4	0.954	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	22613955	3R_22613955_DEL [dm3] 3R_26788233_DEL [dm6]	GG	G	5.012e^-4	0.954	INTERGENIC
3R	8179980	3R_8179980_SNP [dm3] 3R_12354258_SNP [dm6]	C	T	5.020e^-4	0.954	NON_SYNONYMOUS_CODING MBD-R2	TF binding site mE1_TFBS_cad
2R	8463699	2R_8463699_SNP [dm3] 2R_12576194_SNP [dm6]	A	G	5.026e^-4	0.954	SYNONYMOUS_CODING Sin3A UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
2L	7602735	2L_7602735_SNP [dm3] 2L_7602735_SNP [dm6]	T	A	5.045e^-4	0.954	INTERGENIC
3L	14208723	3L_14208723_SNP [dm3] 3L_14215623_SNP [dm6]	A	C	5.051e^-4	0.954	INTRON nuf
2R	18262285	2R_18262285_SNP [dm3] 2R_22374780_SNP [dm6]	C	A	5.064e^-4	0.954	UPSTREAM Rtf1 EXON CR44759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8874370	2R_8874370_SNP [dm3] 2R_12986865_SNP [dm6]	C	A	5.066e^-4	0.954	DOWNSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	8423861	2R_8423861_SNP [dm3] 2R_12536356_SNP [dm6]	G	T	5.066e^-4	0.954	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20432070	2R_20432070_SNP [dm3] 2R_24544547_SNP [dm6]	C	T	5.067e^-4	0.954	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16270338	3L_16270338_SNP [dm3] 3L_16277238_SNP [dm6]	T	C	5.085e^-4	0.954	UPSTREAM CG13065 INTERGENIC	TF binding site mE1_TFBS_cad
3R	11265244	3R_11265244_SNP [dm3] 3R_15439522_SNP [dm6]	T	G	5.091e^-4	0.954	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
2L	20027527	2L_20027527_DEL [dm3] 2L_20027527_DEL [dm6]	AA	A	5.091e^-4	0.954	UPSTREAM sNPF INTERGENIC	TF binding site mE1_TFBS_cnc
3L	15252735	3L_15252735_SNP [dm3] 3L_15259635_SNP [dm6]	C	T	5.103e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_inv
X	2552245	X_2552245_SNP [dm3] X_2658212_SNP [dm6]	G	A	5.115e^-4	0.954	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19107562	2R_19107562_SNP [dm3] 2R_23220039_SNP [dm6]	A	T	5.126e^-4	0.954	INTERGENIC
3R	2779548	3R_2779548_SNP [dm3] 3R_6953826_SNP [dm6]	A	C	5.136e^-4	0.954	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	13920124	3R_13920124_SNP [dm3] 3R_18094402_SNP [dm6]	C	T	5.138e^-4	0.954	INTRON sr
3R	15677888	3R_15677888_SNP [dm3] 3R_19852166_SNP [dm6]	G	A	5.142e^-4	0.954	SYNONYMOUS_CODING CG4662	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7723976	2R_7723976_SNP [dm3] 2R_11836471_SNP [dm6]	A	G	5.143e^-4	0.954	INTRON Sobp
2R	18700629	2R_18700629_SNP [dm3] 2R_22813124_SNP [dm6]	C	T	5.149e^-4	0.954	SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19278694	2R_19278694_SNP [dm3] 2R_23391171_SNP [dm6]	A	G	5.156e^-4	0.954	INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23030891	3R_23030891_SNP [dm3] 3R_27205169_SNP [dm6]	C	A	5.157e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs
2L	18609976	2L_18609976_SNP [dm3] 2L_18609976_SNP [dm6]	A	G	5.168e^-4	0.954	DOWNSTREAM CG10333 INTRON Atac2
2R	17158225	2R_17158225_SNP [dm3] 2R_21270720_SNP [dm6]	C	G	5.171e^-4	0.954	INTRON Rgk3
3R	11244441	3R_11244441_SNP [dm3] 3R_15418719_SNP [dm6]	A	G	5.177e^-4	0.954	UPSTREAM mir-2c INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	9609716	3R_9609716_SNP [dm3] 3R_13783994_SNP [dm6]	T	C	5.179e^-4	0.954	SYNONYMOUS_CODING Dip-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14222653	2R_14222653_DEL [dm3] 2R_18335148_DEL [dm6]	CG	A	5.188e^-4	0.954	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13920126	3R_13920126_SNP [dm3] 3R_18094404_SNP [dm6]	T	C	5.198e^-4	0.954	INTRON sr
3L	6906820	3L_6906820_SNP [dm3] 3L_6913720_SNP [dm6]	C	T	5.198e^-4	0.954	INTRON Prat2	TF binding site mE1_TFBS_sbb
2R	9627060	2R_9627060_SNP [dm3] 2R_13739555_SNP [dm6]	A	G	5.198e^-4	0.954	INTRON fas
X	13182386	X_13182386_SNP [dm3] X_13288353_SNP [dm6]	C	T	5.201e^-4	0.954	UTR_5_PRIME CG15744 DOWNSTREAM CG15743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	14841172	3L_14841172_SNP [dm3] 3L_14848072_SNP [dm6]	G	A	5.203e^-4	0.954	INTRON CG17839
3R	23000704	3R_23000704_DEL [dm3] 3R_27174982_DEL [dm6]	ATGAACCCCAGTTCA...	A	5.216e^-4	0.954	INTRON Ser	TF binding site mE1_TFBS_cad
3R	12105207	3R_12105207_SNP [dm3] 3R_16279485_SNP [dm6]	G	A	5.226e^-4	0.954	INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_Trl
2L	9365052	2L_9365052_SNP [dm3] 2L_9365052_SNP [dm6]	T	G	5.228e^-4	0.954	DOWNSTREAM CR43404 INTERGENIC
2L	7354321	2L_7354321_SNP [dm3] 2L_7354321_SNP [dm6]	A	G	5.230e^-4	0.954	INTERGENIC
2L	7761707	2L_7761707_SNP [dm3] 2L_7761707_SNP [dm6]	A	G	5.233e^-4	0.954	INTRON CG7196
3R	20122024	3R_20122024_INS [dm3] 3R_24296302_INS [dm6]	G	GGAAAAG	5.239e^-4	0.954	INTRON crb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10520403	2R_10520403_SNP [dm3] 2R_14632898_SNP [dm6]	C	T	5.244e^-4	0.954	INTERGENIC
2L	6597426	2L_6597426_SNP [dm3] 2L_6597426_SNP [dm6]	A	G	5.251e^-4	0.954	INTRON CG11319
3R	25165939	3R_25165939_SNP [dm3] 3R_29340217_SNP [dm6]	C	A	5.258e^-4	0.954	INTERGENIC
2R	18203910	2R_18203910_SNP [dm3] 2R_22316405_SNP [dm6]	T	C	5.259e^-4	0.954	EXON CR44758
3R	25526281	3R_25526281_SNP [dm3] 3R_29700559_SNP [dm6]	G	A	5.268e^-4	0.954	INTERGENIC
3R	23367230	3R_23367230_SNP [dm3] 3R_27541508_SNP [dm6]	T	G	5.272e^-4	0.954	UPSTREAM Gr98b INTERGENIC
2R	18739042	2R_18739042_SNP [dm3] 2R_22851519_SNP [dm6]	C	G	5.288e^-4	0.954	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_sens
3L	12710988	3L_12710988_DEL [dm3] 3L_12717888_DEL [dm6]	AAA	G	5.297e^-4	0.954	INTERGENIC
X	22203732	X_22203732_SNP [dm3] X_22801896_SNP [dm6]	T	C	5.298e^-4	0.954	INTERGENIC
3R	13145347	3R_13145347_SNP [dm3] 3R_17319625_SNP [dm6]	A	G	5.299e^-4	0.954	DOWNSTREAM beat-IIa INTERGENIC
3L	10860517	3L_10860517_SNP [dm3] 3L_10867417_SNP [dm6]	A	C	5.300e^-4	0.954	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	13182667	X_13182667_SNP [dm3] X_13288634_SNP [dm6]	T	C	5.301e^-4	0.954	DOWNSTREAM CG15743 INTRON CG15744	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	16876085	2L_16876085_SNP [dm3] 2L_16876085_SNP [dm6]	G	A	5.314e^-4	0.954	INTRON CR31781
3R	11244716	3R_11244716_SNP [dm3] 3R_15418994_SNP [dm6]	T	A	5.330e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	5546310	X_5546310_INS [dm3] X_5652277_INS [dm6]	A	AA	5.336e^-4	0.954	UTR_3_PRIME CG42265	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18603505	2L_18603505_SNP [dm3] 2L_18603505_SNP [dm6]	A	G	5.346e^-4	0.954	INTRON CG10413
3R	20638123	3R_20638123_SNP [dm3] 3R_24812401_SNP [dm6]	G	A	5.360e^-4	0.954	INTRON CG5807	TF binding site mE1_TFBS_zfh1
2L	14610509	2L_14610509_SNP [dm3] 2L_14610509_SNP [dm6]	C	G	5.380e^-4	0.954	INTRON osp
3L	13596624	3L_13596624_SNP [dm3] 3L_13603524_SNP [dm6]	A	G	5.380e^-4	0.954	INTRON bru-3
2R	10620620	2R_10620620_SNP [dm3] 2R_14733115_SNP [dm6]	A	T	5.385e^-4	0.954	INTERGENIC
3R	2296229	3R_2296229_SNP [dm3] 3R_6470507_SNP [dm6]	C	G	5.392e^-4	0.954	NON_SYNONYMOUS_CODING Neurochondrin	TF binding site mE1_TFBS_cad
2R	18207479	2R_18207479_SNP [dm3] 2R_22319974_SNP [dm6]	A	G	5.398e^-4	0.954	INTRON Gp150 EXON CR44756	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	20913489	3R_20913489_SNP [dm3] 3R_25087767_SNP [dm6]	G	C	5.401e^-4	0.954	INTERGENIC
X	2996995	X_2996995_SNP [dm3] X_3102962_SNP [dm6]	A	G	5.401e^-4	0.954	INTRON kirre
3R	2261197	3R_2261197_SNP [dm3] 3R_6435475_SNP [dm6]	A	G	5.419e^-4	0.954	INTRON gpp
2L	15393807	2L_15393807_SNP [dm3] 2L_15393807_SNP [dm6]	T	A	5.422e^-4	0.954	INTERGENIC
3L	6897763	3L_6897763_SNP [dm3] 3L_6904663_SNP [dm6]	C	A	5.430e^-4	0.954	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4403510	2L_4403510_SNP [dm3] 2L_4403510_SNP [dm6]	T	C	5.430e^-4	0.954	DOWNSTREAM CG15431 & 1 other INTRON Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4104706	3L_4104706_SNP [dm3] 3L_4104706_SNP [dm6]	A	C	5.431e^-4	0.954	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	18635845	2R_18635845_DEL [dm3] 2R_22748340_DEL [dm6]	ATATTGATGACAA...	A	5.433e^-4	0.954	INTRON CG42260
2L	2896118	2L_2896118_SNP [dm3] 2L_2896118_SNP [dm6]	A	G	5.454e^-4	0.954	INTRON lilli	TF binding site BDTNP1_TFBS_dl
3R	17754749	3R_17754749_SNP [dm3] 3R_21929027_SNP [dm6]	A	C	5.460e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	7391615	2L_7391615_SNP [dm3] 2L_7391615_SNP [dm6]	A	G	5.469e^-4	0.954	DOWNSTREAM gudu INTRON CG5160
2R	19115777	2R_19115777_SNP [dm3] 2R_23228254_SNP [dm6]	C	A	5.472e^-4	0.954	INTERGENIC
3R	25415925	3R_25415925_SNP [dm3] 3R_29590203_SNP [dm6]	T	G	5.473e^-4	0.954	SYNONYMOUS_CODING CG31041 UPSTREAM CG11470	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18262312	2R_18262312_SNP [dm3] 2R_22374807_SNP [dm6]	G	A	5.492e^-4	0.954	UPSTREAM Rtf1 EXON CR44759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9674082	3R_9674082_SNP [dm3] 3R_13848360_SNP [dm6]	T	C	5.495e^-4	0.954	INTERGENIC
3R	20906722	3R_20906722_SNP [dm3] 3R_25081000_SNP [dm6]	G	T	5.497e^-4	0.954	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16409286	3R_16409286_SNP [dm3] 3R_20583564_SNP [dm6]	G	C	5.499e^-4	0.954	NON_SYNONYMOUS_CODING CG16953
2L	7800878	2L_7800878_SNP [dm3] 2L_7800878_SNP [dm6]	T	C	5.506e^-4	0.954	SYNONYMOUS_CODING r2d2 UPSTREAM Herp DOWNSTREAM cdc14	TF binding site BDTNP1_TFBS_twi
2R	18444642	2R_18444642_INS [dm3] 2R_22557137_INS [dm6]	G	GAGGAGG	5.508e^-4	0.954	INTRON px	TF binding site mE1_TFBS_cad
3R	22760910	3R_22760910_SNP [dm3] 3R_26935188_SNP [dm6]	A	C	5.510e^-4	0.954	INTRON sda
X	13241106	X_13241106_SNP [dm3] X_13347073_SNP [dm6]	C	T	5.513e^-4	0.954	UPSTREAM CR45709 INTERGENIC
3R	13431302	3R_13431302_SNP [dm3] 3R_17605580_SNP [dm6]	A	C	5.518e^-4	0.954	UPSTREAM sll INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_Kr
X	14745533	X_14745533_SNP [dm3] X_14851500_SNP [dm6]	C	G	5.519e^-4	0.954	SYNONYMOUS_CODING CG9521 INTRON Flo2
3R	26575221	3R_26575221_SNP [dm3] 3R_30749499_SNP [dm6]	T	C	5.533e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	2351697	3R_2351697_SNP [dm3] 3R_6525975_SNP [dm6]	C	A	5.538e^-4	0.954	INTERGENIC
3L	3954665	3L_3954665_SNP [dm3] 3L_3954665_SNP [dm6]	G	A	5.541e^-4	0.954	UTR_3_PRIME CG12605
2R	18660097	2R_18660097_SNP [dm3] 2R_22772592_SNP [dm6]	G	C	5.543e^-4	0.954	INTRON CG42260
3L	11588249	3L_11588249_SNP [dm3] 3L_11595149_SNP [dm6]	A	T	5.543e^-4	0.954	INTERGENIC
2R	5103923	2R_5103923_INS [dm3] 2R_9216418_INS [dm6]	A	AGTGCGTTG	5.544e^-4	0.954	INTERGENIC
2R	3178769	2R_3178769_SNP [dm3] 2R_7291264_SNP [dm6]	G	A	5.559e^-4	0.954	INTRON pwn	TF binding site mE1_TFBS_cad
3L	2336693	3L_2336693_SNP [dm3] 3L_2336693_SNP [dm6]	T	C	5.567e^-4	0.954	INTRON MsR1
2R	3812652	2R_3812652_SNP [dm3] 2R_7925147_SNP [dm6]	A	C	5.574e^-4	0.954	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	6827347	2L_6827347_SNP [dm3] 2L_6827347_SNP [dm6]	C	G	5.579e^-4	0.954	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7354269	2L_7354269_SNP [dm3] 2L_7354269_SNP [dm6]	G	T	5.579e^-4	0.954	INTERGENIC
3R	12710778	3R_12710778_SNP [dm3] 3R_16885056_SNP [dm6]	C	A	5.580e^-4	0.954	INTRON iab-8
3R	20998499	3R_20998499_SNP [dm3] 3R_25172777_SNP [dm6]	G	A	5.583e^-4	0.954	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	9108838	X_9108838_SNP [dm3] X_9214805_SNP [dm6]	T	C	5.585e^-4	0.954	UPSTREAM Obp8a & 1 other INTERGENIC
2R	18643303	2R_18643303_SNP [dm3] 2R_22755798_SNP [dm6]	A	T	5.597e^-4	0.954	UTR_3_PRIME CG13526 UPSTREAM CR30267 INTRON CG42260	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	13148095	3R_13148095_SNP [dm3] 3R_17322373_SNP [dm6]	C	T	5.600e^-4	0.954	INTRON beat-IIa
2R	11109989	2R_11109989_SNP [dm3] 2R_15222484_SNP [dm6]	C	T	5.600e^-4	0.954	INTRON CG8079	TF binding site mE1_TFBS_HSA
X	13855690	X_13855690_SNP [dm3] X_13961657_SNP [dm6]	T	A	5.606e^-4	0.954	INTRON mamo
2R	19354335	2R_19354335_SNP [dm3] 2R_23466812_SNP [dm6]	G	A	5.607e^-4	0.954	INTRON CG43795
3L	11542000	3L_11542000_DEL [dm3] 3L_11548900_DEL [dm6]	GCGTGTTAACAAGATGCACG...	G	5.609e^-4	0.954	INTRON Mob2	TF binding site mE1_TFBS_inv
3L	3496731	3L_3496731_SNP [dm3] 3L_3496731_SNP [dm6]	A	T	5.611e^-4	0.954	INTRON CG42324
2R	3583297	2R_3583297_SNP [dm3] 2R_7695792_SNP [dm6]	T	C	5.621e^-4	0.954	UPSTREAM CG1399 INTRON CG1399
2R	7266443	2R_7266443_SNP [dm3] 2R_11378938_SNP [dm6]	C	A	5.622e^-4	0.954	INTRON Tsp47F
2R	18657553	2R_18657553_SNP [dm3] 2R_22770048_SNP [dm6]	C	T	5.633e^-4	0.954	INTRON CG42260
2L	7235575	2L_7235575_SNP [dm3] 2L_7235575_SNP [dm6]	C	T	5.633e^-4	0.954	INTRON Ndae1
2L	12570683	2L_12570683_SNP [dm3] 2L_12570683_SNP [dm6]	T	G	5.646e^-4	0.954	DOWNSTREAM CR44597 EXON CR44598
X	4341707	X_4341707_SNP [dm3] X_4447674_SNP [dm6]	T	C	5.651e^-4	0.954	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	9388825	2L_9388825_SNP [dm3] 2L_9388825_SNP [dm6]	G	A	5.656e^-4	0.954	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11132164	3L_11132164_SNP [dm3] 3L_11139064_SNP [dm6]	C	T	5.659e^-4	0.954	INTRON CG32082
3R	4151683	3R_4151683_SNP [dm3] 3R_8325961_SNP [dm6]	A	T	5.661e^-4	0.954	DOWNSTREAM CG7443 INTRON Poxm
3L	1413031	3L_1413031_SNP [dm3] 3L_1413031_SNP [dm6]	A	C	5.664e^-4	0.954	SYNONYMOUS_CODING CG9168 INTRON Ptp61F
2L	9832124	2L_9832124_SNP [dm3] 2L_9832124_SNP [dm6]	T	G	5.666e^-4	0.954	INTRON nAChRalpha6
3L	8109153	3L_8109153_SNP [dm3] 3L_8116053_SNP [dm6]	T	A	5.668e^-4	0.954	UPSTREAM msk & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	23442946	3R_23442946_SNP [dm3] 3R_27617224_SNP [dm6]	A	C	5.668e^-4	0.954	INTRON Tusp	TF binding site BDTNP1_TFBS_twi
2R	18571285	2R_18571285_SNP [dm3] 2R_22683780_SNP [dm6]	C	G	5.676e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc
3R	15643016	3R_15643016_SNP [dm3] 3R_19817294_SNP [dm6]	A	G	5.677e^-4	0.954	INTRON bnl	TF binding site BDTNP1_TFBS_twi
3R	9621030	3R_9621030_SNP [dm3] 3R_13795308_SNP [dm6]	A	G	5.683e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1408015	3L_1408015_DEL [dm3] 3L_1408015_DEL [dm6]	CAAAGGCCAAAAC...	C	5.690e^-4	0.954	INTRON Ptp61F
X	9548860	X_9548860_SNP [dm3] X_9654827_SNP [dm6]	G	T	5.699e^-4	0.954	INTRON l_1_G0232	TF binding site mE1_TFBS_inv

By genomic position
Variant impact
Gene name

Cuticul_n_C27 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results