DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.324e^-25)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	1.238e-07

Kruskal-Wallis test

Covariate	χ²	p-value
wolba	3.1805	0.0745
In_2L_t	10.3001	0.0058
In_3R_K	29.6606	3.6248e-07

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1753 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	1478024	2L_1478024_SNP [dm3] 2L_1478024_SNP [dm6]	A	G	2.403e^-7	0.236	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	1477782	2L_1477782_DEL [dm3] 2L_1477782_DEL [dm6]	ACTTGTATTTTAATGCAAA...	A	2.519e^-7	0.236	INTERGENIC
2L	1477870	2L_1477870_SNP [dm3] 2L_1477870_SNP [dm6]	A	G	5.868e^-7	0.268	INTERGENIC
2L	1477876	2L_1477876_SNP [dm3] 2L_1477876_SNP [dm6]	C	G	7.065e^-7	0.268	INTERGENIC
2L	1477748	2L_1477748_SNP [dm3] 2L_1477748_SNP [dm6]	A	C	7.132e^-7	0.268	INTERGENIC
2L	1477770	2L_1477770_SNP [dm3] 2L_1477770_SNP [dm6]	C	G	1.204e^-6	0.376	INTERGENIC
2L	21166539	2L_21166539_SNP [dm3] 2L_21166539_SNP [dm6]	G	T	1.850e^-6	0.441	NON_SYNONYMOUS_CODING CG43346 UTR_3_PRIME CG43345 DOWNSTREAM CG9246	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	21157970	2L_21157970_SNP [dm3] 2L_21157970_SNP [dm6]	C	T	1.882e^-6	0.441	SYNONYMOUS_CODING CG9249 UPSTREAM CG9248 DOWNSTREAM Mpp6	TF binding site mE1_TFBS_sens
2L	21112848	2L_21112848_SNP [dm3] 2L_21112848_SNP [dm6]	A	T	3.588e^-6	0.748	INTRON Nhe2
3L	7452459	3L_7452459_SNP [dm3] 3L_7459359_SNP [dm6]	C	T	5.412e^-6	0.866	DOWNSTREAM ppk26 INTERGENIC
3R	14388987	3R_14388987_SNP [dm3] 3R_18563265_SNP [dm6]	C	T	5.437e^-6	0.866	DOWNSTREAM CG43210 & 1 other INTERGENIC
2L	21111347	2L_21111347_SNP [dm3] 2L_21111347_SNP [dm6]	T	C	6.404e^-6	0.866	INTRON Nhe2
2L	14265547	2L_14265547_SNP [dm3] 2L_14265547_SNP [dm6]	A	G	7.760e^-6	0.866	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	1477230	2L_1477230_SNP [dm3] 2L_1477230_SNP [dm6]	A	T	7.877e^-6	0.866	INTERGENIC	TF binding site mE1_TFBS_sens
3R	18246679	3R_18246679_SNP [dm3] 3R_22420957_SNP [dm6]	G	A	8.198e^-6	0.866	UTR_5_PRIME Nop56 UPSTREAM mats	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1076496	2R_1076496_SNP [dm3] 2R_5188991_SNP [dm6]	G	T	8.374e^-6	0.866	INTRON Nipped-A
2R	19251220	2R_19251220_SNP [dm3] 2R_23363697_SNP [dm6]	G	T	8.430e^-6	0.866	NON_SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21076984	2L_21076984_DEL [dm3] 2L_21076984_DEL [dm6]	AA	A	8.768e^-6	0.866	INTRON tadr
2L	21077069	2L_21077069_DEL [dm3] 2L_21077069_DEL [dm6]	TTTGCGC	GATTA	8.768e^-6	0.866	INTRON tadr
3R	14388983	3R_14388983_SNP [dm3] 3R_18563261_SNP [dm6]	T	A	9.797e^-6	0.872	INTERGENIC
3L	1825298	3L_1825298_SNP [dm3] 3L_1825298_SNP [dm6]	T	C	1.015e^-5	0.872	INTRON Cpr62Ba
X	1889459	X_1889459_SNP [dm3] X_1995426_SNP [dm6]	A	G	1.155e^-5	0.872	INTRON Hr4	TF binding site BDTNP1_TFBS_dl
X	13606673	X_13606673_SNP [dm3] X_13712640_SNP [dm6]	G	T	1.191e^-5	0.872	SYNONYMOUS_CODING NnaD INTRON CG9940
3R	14388986	3R_14388986_SNP [dm3] 3R_18563264_SNP [dm6]	G	T	1.205e^-5	0.872	DOWNSTREAM CG43210 & 1 other INTERGENIC
2L	21076144	2L_21076144_SNP [dm3] 2L_21076144_SNP [dm6]	C	T	1.245e^-5	0.872	INTRON tadr
2L	14265526	2L_14265526_SNP [dm3] 2L_14265526_SNP [dm6]	A	C	1.332e^-5	0.872	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	7119481	3L_7119481_SNP [dm3] 3L_7126381_SNP [dm6]	A	C	1.368e^-5	0.872	SYNONYMOUS_CODING BBS1 UPSTREAM msl-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21149705	2L_21149705_SNP [dm3] 2L_21149705_SNP [dm6]	C	T	1.384e^-5	0.872	INTERGENIC	transposable element FlyBase
2L	21108159	2L_21108159_SNP [dm3] 2L_21108159_SNP [dm6]	C	T	1.387e^-5	0.872	UTR_5_PRIME Nhe2 UPSTREAM CR44056 INTRON Nhe2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	21086296	2L_21086296_SNP [dm3] 2L_21086296_SNP [dm6]	G	A	1.424e^-5	0.872	NON_SYNONYMOUS_CODING CG33509 DOWNSTREAM ppk13
3L	16975630	3L_16975630_SNP [dm3] 3L_16982530_SNP [dm6]	T	A	1.441e^-5	0.872	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
3L	5706169	3L_5706169_SNP [dm3] 3L_5713069_SNP [dm6]	C	A	1.516e^-5	0.888	UPSTREAM CG44521 INTRON sif
2R	6923942	2R_6923942_SNP [dm3] 2R_11036437_SNP [dm6]	A	T	1.656e^-5	0.915	INTRON luna
2L	21163362	2L_21163362_SNP [dm3] 2L_21163362_SNP [dm6]	T	G	1.756e^-5	0.915	UPSTREAM CG9246 & 1 other DOWNSTREAM CR44910 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14670959	3R_14670959_SNP [dm3] 3R_18845237_SNP [dm6]	G	T	1.758e^-5	0.915	INTRON CG18208
2L	21155005	2L_21155005_SNP [dm3] 2L_21155005_SNP [dm6]	T	C	1.799e^-5	0.915	INTRON E2f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	5922882	X_5922882_SNP [dm3] X_6028849_SNP [dm6]	T	G	1.805e^-5	0.915	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12634410	3L_12634410_SNP [dm3] 3L_12641310_SNP [dm6]	T	C	1.976e^-5	0.969	INTRON CR32111	TF binding site mE1_TFBS_HSA
2R	12092069	2R_12092069_SNP [dm3] 2R_16204564_SNP [dm6]	C	G	2.052e^-5	0.969	SYNONYMOUS_CODING mrj
X	19760686	X_19760686_DEL [dm3] X_19866653_DEL [dm6]	TT	T	2.108e^-5	0.969	INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19237734	2R_19237734_SNP [dm3] 2R_23350211_SNP [dm6]	A	G	2.118e^-5	0.969	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21257788	3R_21257788_SNP [dm3] 3R_25432066_SNP [dm6]	A	G	2.299e^-5	0.988	INTRON Fur1
2L	21153908	2L_21153908_SNP [dm3] 2L_21153908_SNP [dm6]	C	T	2.301e^-5	0.988	DOWNSTREAM E2f2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
2R	19246030	2R_19246030_SNP [dm3] 2R_23358507_SNP [dm6]	T	A	2.348e^-5	0.988	UTR_3_PRIME CG9875 UPSTREAM CG3500 & 2 others DOWNSTREAM CG9875 EXON CR44168
2R	9042232	2R_9042232_SNP [dm3] 2R_13154727_SNP [dm6]	T	C	2.376e^-5	0.988	SYNONYMOUS_CODING TppII
2L	21118004	2L_21118004_SNP [dm3] 2L_21118004_SNP [dm6]	C	T	2.559e^-5	0.988	SYNONYMOUS_CODING Nhe2
2L	21091215	2L_21091215_SNP [dm3] 2L_21091215_SNP [dm6]	C	T	2.604e^-5	0.988	UPSTREAM CG14397 DOWNSTREAM CG9259 INTERGENIC
3R	7286950	3R_7286950_SNP [dm3] 3R_11461228_SNP [dm6]	A	T	2.671e^-5	0.988	UPSTREAM PGRP-LB INTRON CG17230
X	7987952	X_7987952_SNP [dm3] X_8093919_SNP [dm6]	T	C	2.830e^-5	0.988	UTR_5_PRIME Ubc-E2H DOWNSTREAM CG2258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
3R	21265064	3R_21265064_SNP [dm3] 3R_25439342_SNP [dm6]	A	G	2.881e^-5	0.988	INTRON Fur1
2L	21153999	2L_21153999_SNP [dm3] 2L_21153999_SNP [dm6]	T	C	2.948e^-5	0.988	DOWNSTREAM E2f2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	526385	2L_526385_SNP [dm3] 2L_526385_SNP [dm6]	G	A	3.006e^-5	0.988	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
2L	21056327	2L_21056327_SNP [dm3] 2L_21056327_SNP [dm6]	A	G	3.049e^-5	0.988	NON_SYNONYMOUS_CODING Itgbetanu
3L	13105636	3L_13105636_SNP [dm3] 3L_13112536_SNP [dm6]	T	G	3.197e^-5	0.988	INTERGENIC
2L	11491598	2L_11491598_DEL [dm3] 2L_11491598_DEL [dm6]	AA	A	3.202e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	18289049	2R_18289049_SNP [dm3] 2R_22401544_SNP [dm6]	C	T	3.207e^-5	0.988	INTRON babos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18754520	2L_18754520_SNP [dm3] 2L_18754520_SNP [dm6]	G	A	3.246e^-5	0.988	INTERGENIC
2L	2935970	2L_2935970_SNP [dm3] 2L_2935970_SNP [dm6]	G	T	3.251e^-5	0.988	INTRON lilli
3L	13105641	3L_13105641_SNP [dm3] 3L_13112541_SNP [dm6]	A	T	3.275e^-5	0.988	INTERGENIC
3R	18150474	3R_18150474_DEL [dm3] 3R_22324752_DEL [dm6]	AACAGCA	A	3.348e^-5	0.988	UPSTREAM CG34377 INTERGENIC
3L	5706094	3L_5706094_SNP [dm3] 3L_5712994_SNP [dm6]	G	A	3.368e^-5	0.988	UPSTREAM CG44521 INTRON sif
2L	1605945	2L_1605945_SNP [dm3] 2L_1605945_SNP [dm6]	G	C	3.502e^-5	0.988	INTRON CG31935 & 1 other
2L	21105431	2L_21105431_SNP [dm3] 2L_21105431_SNP [dm6]	C	A	3.512e^-5	0.988	INTRON Nhe2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7379276	3L_7379276_SNP [dm3] 3L_7386176_SNP [dm6]	A	G	3.513e^-5	0.988	SYNONYMOUS_CODING CG8564 DOWNSTREAM smid	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	21100369	2L_21100369_SNP [dm3] 2L_21100369_SNP [dm6]	T	C	3.569e^-5	0.988	SYNONYMOUS_CODING CG12050
X	7987732	X_7987732_SNP [dm3] X_8093699_SNP [dm6]	A	G	3.632e^-5	0.988	DOWNSTREAM CG2258 INTRON Ubc-E2H	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	14265677	2L_14265677_SNP [dm3] 2L_14265677_SNP [dm6]	A	G	3.715e^-5	0.988	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	9733360	3R_9733360_SNP [dm3] 3R_13907638_SNP [dm6]	G	A	3.770e^-5	0.988	INTERGENIC
2L	1477367	2L_1477367_SNP [dm3] 2L_1477367_SNP [dm6]	G	A	3.857e^-5	0.988	INTERGENIC
3R	14671269	3R_14671269_SNP [dm3] 3R_18845547_SNP [dm6]	A	C	3.871e^-5	0.988	INTRON CG18208
X	6453447	X_6453447_SNP [dm3] X_6559414_SNP [dm6]	G	A	3.937e^-5	0.988	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
3R	12938684	3R_12938684_SNP [dm3] 3R_17112962_SNP [dm6]	T	A	4.075e^-5	0.988	INTRON cher	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	11225802	2L_11225802_SNP [dm3] 2L_11225802_SNP [dm6]	G	A	4.160e^-5	0.988	UTR_5_PRIME ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	1079442	3L_1079442_INS [dm3] 3L_1079442_INS [dm6]	T	TT	4.162e^-5	0.988	INTRON bab1
2R	6923904	2R_6923904_SNP [dm3] 2R_11036399_SNP [dm6]	A	G	4.170e^-5	0.988	INTRON luna
3L	13105642	3L_13105642_SNP [dm3] 3L_13112542_SNP [dm6]	C	A	4.197e^-5	0.988	INTERGENIC
3R	12039781	3R_12039781_SNP [dm3] 3R_16214059_SNP [dm6]	G	T	4.292e^-5	0.988	UPSTREAM CR45641 DOWNSTREAM CR45642 INTERGENIC
2L	15225825	2L_15225825_SNP [dm3] 2L_15225825_SNP [dm6]	T	G	4.303e^-5	0.988	INTERGENIC
X	5923064	X_5923064_SNP [dm3] X_6029031_SNP [dm6]	A	G	4.308e^-5	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9043535	2R_9043535_SNP [dm3] 2R_13156030_SNP [dm6]	G	T	4.368e^-5	0.988	INTRON TppII
2L	21075772	2L_21075772_SNP [dm3] 2L_21075772_SNP [dm6]	A	G	4.388e^-5	0.988	INTRON tadr
3L	5706325	3L_5706325_SNP [dm3] 3L_5713225_SNP [dm6]	A	T	4.411e^-5	0.988	UPSTREAM CG44521 INTRON sif
X	6453704	X_6453704_SNP [dm3] X_6559671_SNP [dm6]	C	G	4.535e^-5	0.988	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
3L	2659303	3L_2659303_SNP [dm3] 3L_2659303_SNP [dm6]	T	A	4.547e^-5	0.988	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23184649	3R_23184649_SNP [dm3] 3R_27358927_SNP [dm6]	G	A	4.590e^-5	0.988	UPSTREAM CG42534 INTRON CG42534
2R	10727562	2R_10727562_SNP [dm3] 2R_14840057_SNP [dm6]	G	C	4.612e^-5	0.988	INTERGENIC
2L	21088889	2L_21088889_SNP [dm3] 2L_21088889_SNP [dm6]	C	T	4.647e^-5	0.988	UPSTREAM CG9259 & 1 other INTERGENIC
2L	11472637	2L_11472637_SNP [dm3] 2L_11472637_SNP [dm6]	C	G	4.689e^-5	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10516565	3L_10516565_SNP [dm3] 3L_10523465_SNP [dm6]	C	A	4.880e^-5	0.988	INTRON A2bp1
3L	11309245	3L_11309245_SNP [dm3] 3L_11316145_SNP [dm6]	C	T	4.995e^-5	0.988	EXON CR44361	TF binding site BDTNP1_TFBS_twi
X	6280430	X_6280430_SNP [dm3] X_6386397_SNP [dm6]	C	T	5.041e^-5	0.988	INTERGENIC
3R	9218362	3R_9218362_SNP [dm3] 3R_13392640_SNP [dm6]	G	C	5.126e^-5	0.988	INTRON CCHa2
2L	21146222	2L_21146222_SNP [dm3] 2L_21146222_SNP [dm6]	A	G	5.173e^-5	0.988	NON_SYNONYMOUS_CODING del	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21166674	2L_21166674_SNP [dm3] 2L_21166674_SNP [dm6]	G	C	5.173e^-5	0.988	UTR_5_PRIME CG43346 UTR_3_PRIME CG43345 UPSTREAM CG43346 DOWNSTREAM CG9246	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	12951597	2L_12951597_SNP [dm3] 2L_12951597_SNP [dm6]	C	A	5.210e^-5	0.988	INTERGENIC
2L	14693633	2L_14693633_SNP [dm3] 2L_14693633_SNP [dm6]	G	A	5.227e^-5	0.988	INTERGENIC
2R	1076441	2R_1076441_SNP [dm3] 2R_5188936_SNP [dm6]	T	C	5.234e^-5	0.988	INTRON Nipped-A
3L	11039110	3L_11039110_SNP [dm3] 3L_11046010_SNP [dm6]	A	G	5.291e^-5	0.988	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	13619821	X_13619821_SNP [dm3] X_13725788_SNP [dm6]	T	C	5.317e^-5	0.988	SYNONYMOUS_CODING mus101	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5945995	2R_5945995_SNP [dm3] 2R_10058490_SNP [dm6]	T	C	5.319e^-5	0.988	INTRON magu
3L	467336	3L_467336_SNP [dm3] 3L_467336_SNP [dm6]	A	G	5.584e^-5	0.988	INTRON klar
X	6453698	X_6453698_SNP [dm3] X_6559665_SNP [dm6]	G	A	5.611e^-5	0.988	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
3L	16975611	3L_16975611_SNP [dm3] 3L_16982511_SNP [dm6]	G	C	5.632e^-5	0.988	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
2R	6580149	2R_6580149_INS [dm3] 2R_10692644_INS [dm6]	T	TTTT	5.699e^-5	0.988	INTRON stan	enhancer mE1_CBP_Enhancers
2R	9043473	2R_9043473_SNP [dm3] 2R_13155968_SNP [dm6]	C	T	5.775e^-5	0.988	INTRON TppII
2L	526433	2L_526433_SNP [dm3] 2L_526433_SNP [dm6]	G	A	5.817e^-5	0.988	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
2L	1033968	2L_1033968_SNP [dm3] 2L_1033968_SNP [dm6]	G	A	5.873e^-5	0.988	NON_SYNONYMOUS_CODING IA-2
2L	2757071	2L_2757071_SNP [dm3] 2L_2757071_SNP [dm6]	T	C	5.901e^-5	0.988	UTR_3_PRIME Bacc DOWNSTREAM Bacc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	16089692	3L_16089692_SNP [dm3] 3L_16096592_SNP [dm6]	T	C	5.918e^-5	0.988	SPLICE_SITE_REGION CG13074 SYNONYMOUS_CODING CG13074 DOWNSTREAM ClC-c	TF binding site mE1_TFBS_cad
3L	1079337	3L_1079337_SNP [dm3] 3L_1079337_SNP [dm6]	A	C	5.955e^-5	0.988	INTRON bab1
2R	18245371	2R_18245371_SNP [dm3] 2R_22357866_SNP [dm6]	C	A	6.003e^-5	0.988	INTRON Liprin-gamma
3R	24525141	3R_24525141_SNP [dm3] 3R_28699419_SNP [dm6]	A	G	6.088e^-5	0.988	INTRON htt
2L	21099166	2L_21099166_SNP [dm3] 2L_21099166_SNP [dm6]	T	G	6.121e^-5	0.988	SYNONYMOUS_CODING CG12050 DOWNSTREAM CG34136	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17311902	X_17311902_SNP [dm3] X_17417869_SNP [dm6]	T	A	6.132e^-5	0.988	INTRON CG8611	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1604192	3L_1604192_SNP [dm3] 3L_1604192_SNP [dm6]	C	A	6.162e^-5	0.988	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
X	6453439	X_6453439_SNP [dm3] X_6559406_SNP [dm6]	A	C	6.357e^-5	0.988	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
2R	6582884	2R_6582884_SNP [dm3] 2R_10695379_SNP [dm6]	T	A	6.460e^-5	0.988	INTRON stan
2R	16087329	2R_16087329_SNP [dm3] 2R_20199824_SNP [dm6]	A	T	6.502e^-5	0.988	INTERGENIC
3R	9555411	3R_9555411_SNP [dm3] 3R_13729689_SNP [dm6]	G	T	6.506e^-5	0.988	INTRON CG34383	TF binding site mE1_TFBS_inv
3L	18832590	3L_18832590_SNP [dm3] 3L_18839490_SNP [dm6]	T	C	6.621e^-5	0.988	INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23495384	3R_23495384_SNP [dm3] 3R_27669662_SNP [dm6]	A	C	6.728e^-5	0.988	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5336661	X_5336661_SNP [dm3] X_5442628_SNP [dm6]	A	G	6.789e^-5	0.988	INTERGENIC
3L	13112945	3L_13112945_SNP [dm3] 3L_13119845_SNP [dm6]	A	T	6.929e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	18754607	2L_18754607_SNP [dm3] 2L_18754607_SNP [dm6]	C	T	6.971e^-5	0.988	INTERGENIC
3R	20842508	3R_20842508_SNP [dm3] 3R_25016786_SNP [dm6]	C	T	6.984e^-5	0.988	SYNONYMOUS_CODING tnc
3R	9218333	3R_9218333_DEL [dm3] 3R_13392611_DEL [dm6]	TT	A	6.986e^-5	0.988	INTRON CCHa2
2R	19244050	2R_19244050_SNP [dm3] 2R_23356527_SNP [dm6]	A	G	7.087e^-5	0.988	SYNONYMOUS_CODING CG3500 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	18149642	3R_18149642_SNP [dm3] 3R_22323920_SNP [dm6]	T	G	7.105e^-5	0.988	UTR_5_PRIME CG34377
3R	10536061	3R_10536061_SNP [dm3] 3R_14710339_SNP [dm6]	C	T	7.223e^-5	0.988	INTRON kibra
X	19760780	X_19760780_SNP [dm3] X_19866747_SNP [dm6]	G	A	7.347e^-5	0.988	INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	15319991	3R_15319991_SNP [dm3] 3R_19494269_SNP [dm6]	A	G	7.367e^-5	0.988	SYNONYMOUS_CODING Dys
2L	21179092	2L_21179092_SNP [dm3] 2L_21179092_SNP [dm6]	A	G	7.372e^-5	0.988	UPSTREAM Mcm10 INTRON bur EXON CR44911	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	5191323	X_5191323_SNP [dm3] X_5297290_SNP [dm6]	G	A	7.589e^-5	0.988	INTRON CG42749
X	6453443	X_6453443_SNP [dm3] X_6559410_SNP [dm6]	C	T	7.617e^-5	0.988	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
3R	14670925	3R_14670925_SNP [dm3] 3R_18845203_SNP [dm6]	C	A	7.650e^-5	0.988	INTRON CG18208
3R	14670929	3R_14670929_SNP [dm3] 3R_18845207_SNP [dm6]	G	T	7.704e^-5	0.988	INTRON CG18208
3L	18273671	3L_18273671_SNP [dm3] 3L_18280571_SNP [dm6]	G	A	7.735e^-5	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14265675	2L_14265675_SNP [dm3] 2L_14265675_SNP [dm6]	A	G	7.830e^-5	0.988	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	14494202	2R_14494202_SNP [dm3] 2R_18606697_SNP [dm6]	A	G	7.984e^-5	0.988	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	16089699	3L_16089699_SNP [dm3] 3L_16096599_SNP [dm6]	A	G	7.993e^-5	0.988	SPLICE_SITE_REGION CG13074 DOWNSTREAM ClC-c INTRON CG13074	TF binding site mE1_TFBS_cad
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	8.053e^-5	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19246038	2R_19246038_SNP [dm3] 2R_23358515_SNP [dm6]	G	T	8.067e^-5	0.988	UPSTREAM CG3500 & 2 others DOWNSTREAM CG9875 EXON CR44168
2L	11918013	2L_11918013_SNP [dm3] 2L_11918013_SNP [dm6]	C	T	8.095e^-5	0.988	INTRON Pde1c
2L	15847886	2L_15847886_SNP [dm3] 2L_15847886_SNP [dm6]	C	G	8.103e^-5	0.988	DOWNSTREAM CR43763 INTERGENIC
3L	466109	3L_466109_SNP [dm3] 3L_466109_SNP [dm6]	A	C	8.356e^-5	0.988	INTRON klar
2R	15464318	2R_15464318_SNP [dm3] 2R_19576813_SNP [dm6]	A	C	8.560e^-5	0.988	INTRON sm
2R	18282941	2R_18282941_DEL [dm3] 2R_22395436_DEL [dm6]	AA	A	8.598e^-5	0.988	INTRON babos
X	8178709	X_8178709_SNP [dm3] X_8284676_SNP [dm6]	A	C	8.614e^-5	0.988	INTRON nAChRalpha3
2R	8197153	2R_8197153_SNP [dm3] 2R_12309648_SNP [dm6]	C	T	8.655e^-5	0.988	SYNONYMOUS_CODING CG17739	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14820700	3R_14820700_SNP [dm3] 3R_18994978_SNP [dm6]	A	G	8.656e^-5	0.988	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26182554	3R_26182554_SNP [dm3] 3R_30356832_SNP [dm6]	C	T	8.756e^-5	0.988	INTRON hdc
3R	14388998	3R_14388998_SNP [dm3] 3R_18563276_SNP [dm6]	A	G	8.894e^-5	0.988	DOWNSTREAM CG43210 & 1 other INTERGENIC
2L	21156739	2L_21156739_SNP [dm3] 2L_21156739_SNP [dm6]	A	G	8.955e^-5	0.988	UTR_5_PRIME E2f2 & 1 other UPSTREAM Mpp6 & 1 other DOWNSTREAM CG9249	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	14472478	3R_14472478_SNP [dm3] 3R_18646756_SNP [dm6]	C	T	8.968e^-5	0.988	SYNONYMOUS_CODING qin
2R	2425778	2R_2425778_SNP [dm3] 2R_6538273_SNP [dm6]	T	C	9.021e^-5	0.988	INTRON jing
2L	19889983	2L_19889983_SNP [dm3] 2L_19889983_SNP [dm6]	G	C	9.067e^-5	0.988	DOWNSTREAM CG10481 INTRON sick
3R	14390119	3R_14390119_DEL [dm3] 3R_18564397_DEL [dm6]	AGAAAATCGTTTAA...	A	9.096e^-5	0.988	UTR_3_PRIME CG43210 & 1 other DOWNSTREAM CG43194 & 1 other
3R	21585441	3R_21585441_SNP [dm3] 3R_25759719_SNP [dm6]	T	A	9.100e^-5	0.988	INTRON LpR1
3R	7734002	3R_7734002_SNP [dm3] 3R_11908280_SNP [dm6]	A	C	9.126e^-5	0.988	INTRON Cad87A
3R	9218347	3R_9218347_INS [dm3] 3R_13392625_INS [dm6]	A	AGA	9.192e^-5	0.988	INTRON CCHa2
3R	19915333	3R_19915333_SNP [dm3] 3R_24089611_SNP [dm6]	G	A	9.254e^-5	0.988	INTRON 4EHP
3R	5895504	3R_5895504_SNP [dm3] 3R_10069782_SNP [dm6]	T	A	9.334e^-5	0.988	INTERGENIC
2R	5644050	2R_5644050_SNP [dm3] 2R_9756545_SNP [dm6]	G	A	9.523e^-5	0.988	UTR_3_PRIME CG1690 DOWNSTREAM CG1690 INTRON trpl
3R	21585684	3R_21585684_SNP [dm3] 3R_25759962_SNP [dm6]	G	A	9.552e^-5	0.988	INTRON LpR1
X	20888793	X_20888793_SNP [dm3] X_21017766_SNP [dm6]	A	T	9.568e^-5	0.988	INTERGENIC
2L	11458720	2L_11458720_SNP [dm3] 2L_11458720_SNP [dm6]	G	C	9.574e^-5	0.988	INTERGENIC
3R	19743105	3R_19743105_SNP [dm3] 3R_23917383_SNP [dm6]	G	A	9.711e^-5	0.988	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13606664	X_13606664_SNP [dm3] X_13712631_SNP [dm6]	G	T	9.817e^-5	0.988	SPLICE_SITE_REGION NnaD SYNONYMOUS_CODING NnaD INTRON CG9940
X	5336601	X_5336601_SNP [dm3] X_5442568_SNP [dm6]	A	T	9.845e^-5	0.988	INTERGENIC
2L	5169461	2L_5169461_SNP [dm3] 2L_5169461_SNP [dm6]	A	T	9.871e^-5	0.988	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	11250885	2R_11250885_SNP [dm3] 2R_15363380_SNP [dm6]	C	T	1.002e^-4	0.988	INTRON unc-5
X	3927096	X_3927096_SNP [dm3] X_4033063_SNP [dm6]	A	T	1.007e^-4	0.988	INTERGENIC
3R	18246627	3R_18246627_SNP [dm3] 3R_22420905_SNP [dm6]	G	C	1.018e^-4	0.988	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20497486	2R_20497486_SNP [dm3] 2R_24609963_SNP [dm6]	C	T	1.029e^-4	0.988	SPLICE_SITE_REGION CG42360 DOWNSTREAM CG4741 INTRON CG42360	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6792036	X_6792036_SNP [dm3] X_6898003_SNP [dm6]	G	C	1.030e^-4	0.988	INTERGENIC
3L	13107418	3L_13107418_SNP [dm3] 3L_13114318_SNP [dm6]	G	T	1.036e^-4	0.988	UTR_5_PRIME trn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	18246642	3R_18246642_SNP [dm3] 3R_22420920_SNP [dm6]	T	A	1.037e^-4	0.988	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12989719	2L_12989719_SNP [dm3] 2L_12989719_SNP [dm6]	C	T	1.044e^-4	0.988	INTERGENIC
3L	3565641	3L_3565641_SNP [dm3] 3L_3565641_SNP [dm6]	T	C	1.052e^-4	0.988	INTRON Eip63E
2L	21135985	2L_21135985_SNP [dm3] 2L_21135985_SNP [dm6]	T	G	1.072e^-4	0.988	UTR_3_PRIME Dap160 INTRON Dap160
3L	12743518	3L_12743518_INS [dm3] 3L_12750418_INS [dm6]	A	AA	1.080e^-4	0.988	UPSTREAM CG10984 & 1 other INTRON CG10984	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	9982627	2L_9982627_SNP [dm3] 2L_9982627_SNP [dm6]	T	A	1.092e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
2R	15464290	2R_15464290_SNP [dm3] 2R_19576785_SNP [dm6]	G	A	1.100e^-4	0.988	INTRON sm
3L	16089705	3L_16089705_SNP [dm3] 3L_16096605_SNP [dm6]	A	T	1.115e^-4	0.988	DOWNSTREAM ClC-c INTRON CG13074	TF binding site mE1_TFBS_cad
3R	14389108	3R_14389108_SNP [dm3] 3R_18563386_SNP [dm6]	A	C	1.117e^-4	0.988	DOWNSTREAM CG43210 & 1 other INTERGENIC
3L	1202142	3L_1202142_SNP [dm3] 3L_1202142_SNP [dm6]	G	A	1.117e^-4	0.988	SYNONYMOUS_CODING CG32335 INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6585112	2R_6585112_SNP [dm3] 2R_10697607_SNP [dm6]	C	G	1.129e^-4	0.988	INTRON stan
3L	15697437	3L_15697437_SNP [dm3] 3L_15704337_SNP [dm6]	G	C	1.131e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1079912	3L_1079912_SNP [dm3] 3L_1079912_SNP [dm6]	C	T	1.131e^-4	0.988	INTRON bab1
2L	4477759	2L_4477759_SNP [dm3] 2L_4477759_SNP [dm6]	T	C	1.149e^-4	0.988	UTR_3_PRIME dp UPSTREAM ine
3R	23506480	3R_23506480_SNP [dm3] 3R_27680758_SNP [dm6]	A	G	1.160e^-4	0.988	SYNONYMOUS_CODING Sce DOWNSTREAM CG12883	TF binding site mE1_TFBS_chinmo
X	20888791	X_20888791_SNP [dm3] X_21017764_SNP [dm6]	T	G	1.169e^-4	0.988	INTERGENIC
2R	11786483	2R_11786483_SNP [dm3] 2R_15898978_SNP [dm6]	C	T	1.173e^-4	0.988	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12093856	3L_12093856_SNP [dm3] 3L_12100756_SNP [dm6]	A	T	1.183e^-4	0.988	INTERGENIC
3L	18831598	3L_18831598_SNP [dm3] 3L_18838498_SNP [dm6]	A	T	1.193e^-4	0.988	INTRON Indy	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	11903894	2L_11903894_SNP [dm3] 2L_11903894_SNP [dm6]	T	C	1.196e^-4	0.988	INTRON Pde1c
3L	15518927	3L_15518927_INS [dm3] 3L_15525827_INS [dm6]	A	ACATGTGACACTTATTGTAA...	1.200e^-4	0.988	UPSTREAM CG33986 DOWNSTREAM CG33985 INTERGENIC
2L	17092373	2L_17092373_SNP [dm3] 2L_17092373_SNP [dm6]	C	T	1.200e^-4	0.988	INTERGENIC
2R	19237559	2R_19237559_SNP [dm3] 2R_23350036_SNP [dm6]	C	T	1.206e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5597997	3L_5597997_SNP [dm3] 3L_5604897_SNP [dm6]	A	T	1.209e^-4	0.988	NON_SYNONYMOUS_CODING mthl2 UPSTREAM CG10590
X	8471385	X_8471385_SNP [dm3] X_8577352_SNP [dm6]	C	T	1.220e^-4	0.988	INTRON CG12065
2L	6591424	2L_6591424_SNP [dm3] 2L_6591424_SNP [dm6]	A	G	1.227e^-4	0.988	INTRON CG11319
3L	10711887	3L_10711887_SNP [dm3] 3L_10718787_SNP [dm6]	T	A	1.230e^-4	0.988	INTERGENIC
3R	13921857	3R_13921857_SNP [dm3] 3R_18096135_SNP [dm6]	T	C	1.231e^-4	0.988	SYNONYMOUS_CODING sr
3L	6286613	3L_6286613_SNP [dm3] 3L_6293513_SNP [dm6]	T	C	1.237e^-4	0.988	INTERGENIC
2L	21102724	2L_21102724_SNP [dm3] 2L_21102724_SNP [dm6]	A	G	1.243e^-4	0.988	UPSTREAM CG9257 & 1 other EXON CR43809	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	6837020	2L_6837020_SNP [dm3] 2L_6837020_SNP [dm6]	G	A	1.244e^-4	0.988	INTRON sens-2
3R	14326577	3R_14326577_SNP [dm3] 3R_18500855_SNP [dm6]	G	T	1.249e^-4	0.988	INTRON fru	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	7729799	3R_7729799_SNP [dm3] 3R_11904077_SNP [dm6]	C	T	1.254e^-4	0.988	INTRON Cad87A
3L	1228339	3L_1228339_SNP [dm3] 3L_1228339_SNP [dm6]	C	G	1.266e^-4	0.988	DOWNSTREAM LysS INTRON mwh
3R	6910949	3R_6910949_SNP [dm3] 3R_11085227_SNP [dm6]	C	G	1.273e^-4	0.988	EXON CR44940
2R	17513844	2R_17513844_SNP [dm3] 2R_21626339_SNP [dm6]	T	C	1.274e^-4	0.988	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_sens
3R	26621265	3R_26621265_SNP [dm3] 3R_30795543_SNP [dm6]	T	G	1.281e^-4	0.988	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1285619	3L_1285619_SNP [dm3] 3L_1285619_SNP [dm6]	A	T	1.288e^-4	0.988	INTRON CG32333
2L	11411934	2L_11411934_SNP [dm3] 2L_11411934_SNP [dm6]	T	A	1.289e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
2R	19245997	2R_19245997_SNP [dm3] 2R_23358474_SNP [dm6]	T	A	1.294e^-4	0.988	UTR_3_PRIME CG9875 UPSTREAM CG3500 & 2 others DOWNSTREAM CR44168 & 1 other
2L	263485	2L_263485_SNP [dm3] 2L_263485_SNP [dm6]	A	C	1.296e^-4	0.988	UTR_3_PRIME CG17075 DOWNSTREAM CR44219 INTRON CG3645	TF binding site mE1_TFBS_cad
3R	9218390	3R_9218390_SNP [dm3] 3R_13392668_SNP [dm6]	T	C	1.316e^-4	0.988	INTRON CCHa2
2R	12105168	2R_12105168_DEL [dm3] 2R_16217663_DEL [dm6]	AA	A	1.317e^-4	0.988	INTRON mrj	TF binding site BDTNP1_TFBS_da
2L	11484404	2L_11484404_SNP [dm3] 2L_11484404_SNP [dm6]	G	C	1.317e^-4	0.988	UPSTREAM CG43355 & 1 other INTERGENIC
2R	9598547	2R_9598547_SNP [dm3] 2R_13711042_SNP [dm6]	C	T	1.319e^-4	0.988	INTRON fas	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	16493203	3L_16493203_SNP [dm3] 3L_16500103_SNP [dm6]	T	C	1.327e^-4	0.988	SYNONYMOUS_CODING st INTRON CG43373
3R	7743523	3R_7743523_SNP [dm3] 3R_11917801_SNP [dm6]	G	A	1.333e^-4	0.988	INTRON Cad87A
2L	5180191	2L_5180191_SNP [dm3] 2L_5180191_SNP [dm6]	C	A	1.333e^-4	0.988	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	14265705	2L_14265705_SNP [dm3] 2L_14265705_SNP [dm6]	A	T	1.338e^-4	0.988	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	18435713	2R_18435713_SNP [dm3] 2R_22548208_SNP [dm6]	G	A	1.339e^-4	0.988	INTRON px
3L	467306	3L_467306_SNP [dm3] 3L_467306_SNP [dm6]	C	A	1.346e^-4	0.988	INTRON klar
2L	1292169	2L_1292169_SNP [dm3] 2L_1292169_SNP [dm6]	A	T	1.348e^-4	0.988	INTRON robo3
2R	15468074	2R_15468074_SNP [dm3] 2R_19580569_SNP [dm6]	A	G	1.360e^-4	0.988	INTRON sm
2R	11999664	2R_11999664_SNP [dm3] 2R_16112159_SNP [dm6]	T	A	1.361e^-4	0.988	INTRON Asph
3R	18930880	3R_18930880_SNP [dm3] 3R_23105158_SNP [dm6]	A	T	1.364e^-4	0.988	INTRON CG13830
2R	20195939	2R_20195939_SNP [dm3] 2R_24308416_SNP [dm6]	G	C	1.369e^-4	0.988	INTRON betaTub60D	regulatory region REDfly_CRMs
2L	11471429	2L_11471429_SNP [dm3] 2L_11471429_SNP [dm6]	C	G	1.375e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7734023	3R_7734023_SNP [dm3] 3R_11908301_SNP [dm6]	C	G	1.376e^-4	0.988	INTRON Cad87A
3R	24652690	3R_24652690_SNP [dm3] 3R_28826968_SNP [dm6]	A	G	1.384e^-4	0.988	SYNONYMOUS_CODING WASp
2L	6227410	2L_6227410_SNP [dm3] 2L_6227410_SNP [dm6]	C	T	1.387e^-4	0.988	DOWNSTREAM Ugt37b1 INTERGENIC
3L	5598025	3L_5598025_SNP [dm3] 3L_5604925_SNP [dm6]	C	G	1.401e^-4	0.988	NON_SYNONYMOUS_CODING mthl2 UPSTREAM CG10590
2R	19669970	2R_19669970_SNP [dm3] 2R_23782447_SNP [dm6]	T	C	1.402e^-4	0.988	INTRON CG9850	TF binding site mE1_TFBS_chinmo
2L	12951599	2L_12951599_SNP [dm3] 2L_12951599_SNP [dm6]	A	G	1.404e^-4	0.988	INTERGENIC
2L	7537572	2L_7537572_SNP [dm3] 2L_7537572_SNP [dm6]	T	A	1.406e^-4	0.988	INTRON RapGAP1	TF binding site mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15464313	2R_15464313_INS [dm3] 2R_19576808_INS [dm6]	A	AA	1.407e^-4	0.988	INTRON sm
2R	18245408	2R_18245408_SNP [dm3] 2R_22357903_SNP [dm6]	A	G	1.412e^-4	0.988	INTRON Liprin-gamma	transposable element FlyBase
2R	10931134	2R_10931134_SNP [dm3] 2R_15043629_SNP [dm6]	A	G	1.419e^-4	0.988	INTERGENIC
2L	14677122	2L_14677122_SNP [dm3] 2L_14677122_SNP [dm6]	C	T	1.424e^-4	0.988	INTRON osp
2R	18968413	2R_18968413_SNP [dm3] 2R_23080890_SNP [dm6]	G	A	1.425e^-4	0.988	SYNONYMOUS_CODING Gr59a	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17332851	2L_17332851_SNP [dm3] 2L_17332851_SNP [dm6]	G	A	1.448e^-4	0.988	INTERGENIC
2R	7042665	2R_7042665_SNP [dm3] 2R_11155160_SNP [dm6]	T	C	1.454e^-4	0.988	SYNONYMOUS_CODING CG13230 INTRON CG13229
X	5486300	X_5486300_SNP [dm3] X_5592267_SNP [dm6]	T	C	1.459e^-4	0.988	INTERGENIC
3R	18246755	3R_18246755_SNP [dm3] 3R_22421033_SNP [dm6]	C	T	1.471e^-4	0.988	UTR_5_PRIME Nop56 UPSTREAM mats	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19246061	2R_19246061_SNP [dm3] 2R_23358538_SNP [dm6]	A	G	1.472e^-4	0.988	UPSTREAM CG3500 & 2 others DOWNSTREAM CG9875 EXON CR44168
3L	10125741	3L_10125741_SNP [dm3] 3L_10132641_SNP [dm6]	C	T	1.487e^-4	0.988	INTRON dpr6
3L	3020274	3L_3020274_SNP [dm3] 3L_3020274_SNP [dm6]	G	T	1.499e^-4	0.988	INTERGENIC
3L	4755648	3L_4755648_SNP [dm3] 3L_4755648_SNP [dm6]	T	G	1.506e^-4	0.988	INTRON RhoGEF64C EXON CR43881
2L	4477621	2L_4477621_SNP [dm3] 2L_4477621_SNP [dm6]	C	T	1.507e^-4	0.988	UTR_3_PRIME dp UPSTREAM ine
2R	5646802	2R_5646802_INS [dm3] 2R_9759297_INS [dm6]	T	AA	1.510e^-4	0.988	INTRON trpl
X	8178751	X_8178751_SNP [dm3] X_8284718_SNP [dm6]	T	G	1.510e^-4	0.988	INTRON nAChRalpha3
2R	12030703	2R_12030703_SNP [dm3] 2R_16143198_SNP [dm6]	G	A	1.511e^-4	0.988	UTR_5_PRIME Aats-cys DOWNSTREAM CG30094	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	5843797	X_5843797_SNP [dm3] X_5949764_SNP [dm6]	G	T	1.529e^-4	0.988	SYNONYMOUS_CODING CG6041 UPSTREAM CG32755
X	5486305	X_5486305_SNP [dm3] X_5592272_SNP [dm6]	C	A	1.539e^-4	0.988	INTERGENIC
2R	9043424	2R_9043424_SNP [dm3] 2R_13155919_SNP [dm6]	G	A	1.540e^-4	0.988	INTRON TppII
2R	5646798	2R_5646798_SNP [dm3] 2R_9759293_SNP [dm6]	C	A	1.543e^-4	0.988	INTRON trpl
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	1.555e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12107494	2R_12107494_SNP [dm3] 2R_16219989_SNP [dm6]	T	A	1.561e^-4	0.988	UPSTREAM tRNA:CR30240 & 1 other DOWNSTREAM tRNA:CR30239 INTRON mrj	TF binding site BDTNP1_TFBS_dl
3L	8839080	3L_8839080_SNP [dm3] 3L_8845980_SNP [dm6]	T	C	1.563e^-4	0.988	INTRON dally
2R	9581771	2R_9581771_SNP [dm3] 2R_13694266_SNP [dm6]	T	C	1.563e^-4	0.988	UPSTREAM CG6220 INTRON fas	TF binding site mE1_TFBS_chinmo
2R	5646811	2R_5646811_INS [dm3] 2R_9759306_INS [dm6]	A	ACCAACT	1.565e^-4	0.988	INTRON trpl
2L	21184287	2L_21184287_SNP [dm3] 2L_21184287_SNP [dm6]	A	T	1.571e^-4	0.988	SYNONYMOUS_CODING Ret
2L	21191871	2L_21191871_SNP [dm3] 2L_21191871_SNP [dm6]	T	A	1.571e^-4	0.988	INTRON Ret
X	13606565	X_13606565_SNP [dm3] X_13712532_SNP [dm6]	A	G	1.573e^-4	0.988	INTRON CG9940 & 1 other
X	13606606	X_13606606_SNP [dm3] X_13712573_SNP [dm6]	A	G	1.573e^-4	0.988	INTRON CG9940 & 1 other
2R	8937438	2R_8937438_SNP [dm3] 2R_13049933_SNP [dm6]	T	C	1.580e^-4	0.988	UPSTREAM CG13324 INTERGENIC
3L	12985301	3L_12985301_SNP [dm3] 3L_12992201_SNP [dm6]	T	A	1.584e^-4	0.988	INTERGENIC
2R	2453604	2R_2453604_SNP [dm3] 2R_6566099_SNP [dm6]	G	T	1.587e^-4	0.988	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15225841	2L_15225841_SNP [dm3] 2L_15225841_SNP [dm6]	C	T	1.592e^-4	0.988	INTERGENIC
2L	2650495	2L_2650495_SNP [dm3] 2L_2650495_SNP [dm6]	T	C	1.594e^-4	0.988	SYNONYMOUS_CODING CG33125
2R	12107693	2R_12107693_SNP [dm3] 2R_16220188_SNP [dm6]	T	G	1.599e^-4	0.988	UPSTREAM tRNA:CR30238 DOWNSTREAM tRNA:CR30239 & 1 other INTRON mrj	TF binding site BDTNP1_TFBS_dl
3L	17965562	3L_17965562_SNP [dm3] 3L_17972462_SNP [dm6]	G	C	1.603e^-4	0.988	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	16795237	X_16795237_SNP [dm3] X_16901204_SNP [dm6]	T	A	1.610e^-4	0.988	DOWNSTREAM CR44754 INTERGENIC
3R	12036822	3R_12036822_SNP [dm3] 3R_16211100_SNP [dm6]	C	T	1.617e^-4	0.988	INTERGENIC
2R	11999658	2R_11999658_DEL [dm3] 2R_16112153_DEL [dm6]	TT	T	1.617e^-4	0.988	INTRON Asph
3R	21257774	3R_21257774_SNP [dm3] 3R_25432052_SNP [dm6]	T	G	1.620e^-4	0.988	INTRON Fur1
2L	10625623	2L_10625623_SNP [dm3] 2L_10625623_SNP [dm6]	T	C	1.624e^-4	0.988	INTRON Trim9
3R	18246384	3R_18246384_SNP [dm3] 3R_22420662_SNP [dm6]	T	C	1.639e^-4	0.988	SYNONYMOUS_CODING Nop56 UPSTREAM mats	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5179753	2L_5179753_SNP [dm3] 2L_5179753_SNP [dm6]	T	C	1.643e^-4	0.988	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	5706150	3L_5706150_SNP [dm3] 3L_5713050_SNP [dm6]	T	C	1.644e^-4	0.988	UPSTREAM CG44521 INTRON sif
2L	15090328	2L_15090328_SNP [dm3] 2L_15090328_SNP [dm6]	A	G	1.649e^-4	0.988	INTRON CG15270
2L	9668971	2L_9668971_SNP [dm3] 2L_9668971_SNP [dm6]	C	T	1.649e^-4	0.988	DOWNSTREAM CR44150 INTERGENIC
3L	7982844	3L_7982844_DEL [dm3] 3L_7989744_DEL [dm6]	TT	T	1.654e^-4	0.988	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11016619	3L_11016619_SNP [dm3] 3L_11023519_SNP [dm6]	T	A	1.658e^-4	0.988	UPSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18759093	2L_18759093_SNP [dm3] 2L_18759093_SNP [dm6]	A	C	1.669e^-4	0.988	INTERGENIC
2R	14494177	2R_14494177_SNP [dm3] 2R_18606672_SNP [dm6]	A	G	1.672e^-4	0.988	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	13469993	3L_13469993_SNP [dm3] 3L_13476893_SNP [dm6]	A	G	1.672e^-4	0.988	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	5866038	3R_5866038_SNP [dm3] 3R_10040316_SNP [dm6]	T	C	1.705e^-4	0.988	INTRON Mical
2R	17733638	2R_17733638_SNP [dm3] 2R_21846133_SNP [dm6]	T	G	1.712e^-4	0.988	INTERGENIC
2L	5169764	2L_5169764_SNP [dm3] 2L_5169764_SNP [dm6]	G	A	1.721e^-4	0.988	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	13469989	3L_13469989_SNP [dm3] 3L_13476889_SNP [dm6]	G	T	1.726e^-4	0.988	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26231730	3R_26231730_DEL [dm3] 3R_30406008_DEL [dm6]	TCATAGGT	T	1.727e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1480246	2L_1480246_SNP [dm3] 2L_1480246_SNP [dm6]	G	A	1.734e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15325016	3R_15325016_SNP [dm3] 3R_19499294_SNP [dm6]	A	G	1.745e^-4	0.988	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	9581777	2R_9581777_SNP [dm3] 2R_13694272_SNP [dm6]	C	T	1.767e^-4	0.988	UPSTREAM CG6220 INTRON fas	TF binding site mE1_TFBS_chinmo
2R	17374192	2R_17374192_SNP [dm3] 2R_21486687_SNP [dm6]	T	C	1.778e^-4	0.988	SYNONYMOUS_CODING Sara DOWNSTREAM Fkbp14	TF binding site mE1_TFBS_HSA
2L	21123359	2L_21123359_SNP [dm3] 2L_21123359_SNP [dm6]	G	C	1.784e^-4	0.988	INTRON Nhe2
3R	19323752	3R_19323752_SNP [dm3] 3R_23498030_SNP [dm6]	T	A	1.787e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15519279	3L_15519279_SNP [dm3] 3L_15526179_SNP [dm6]	A	C	1.791e^-4	0.988	UPSTREAM CG33986 DOWNSTREAM CG42729 INTRON CG33985
X	17947145	X_17947145_SNP [dm3] X_18053112_SNP [dm6]	G	A	1.794e^-4	0.988	INTRON Sh	TF binding site BDTNP1_TFBS_dl
2L	3085159	2L_3085159_SNP [dm3] 2L_3085159_SNP [dm6]	C	T	1.802e^-4	0.988	INTRON toc
2L	3085152	2L_3085152_SNP [dm3] 2L_3085152_SNP [dm6]	C	T	1.803e^-4	0.988	INTRON toc
2R	14495908	2R_14495908_SNP [dm3] 2R_18608403_SNP [dm6]	C	A	1.805e^-4	0.988	INTRON GEFmeso	TF binding site mE1_TFBS_cad
2L	6274150	2L_6274150_SNP [dm3] 2L_6274150_SNP [dm6]	G	T	1.814e^-4	0.988	INTRON Ddr
3R	14163559	3R_14163559_SNP [dm3] 3R_18337837_SNP [dm6]	C	T	1.818e^-4	0.988	INTRON CG15803
3R	23567295	3R_23567295_SNP [dm3] 3R_27741573_SNP [dm6]	C	T	1.821e^-4	0.988	INTRON Ets98B
2R	10229307	2R_10229307_SNP [dm3] 2R_14341802_SNP [dm6]	C	G	1.825e^-4	0.988	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl
X	5549234	X_5549234_SNP [dm3] X_5655201_SNP [dm6]	A	T	1.837e^-4	0.988	INTRON CG42265
2R	10368231	2R_10368231_SNP [dm3] 2R_14480726_SNP [dm6]	A	T	1.839e^-4	0.988	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	9982642	2L_9982642_SNP [dm3] 2L_9982642_SNP [dm6]	C	G	1.850e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
3R	6993813	3R_6993813_SNP [dm3] 3R_11168091_SNP [dm6]	C	A	1.863e^-4	0.988	UPSTREAM Ugt86De DOWNSTREAM Ugt35b INTERGENIC
X	19759607	X_19759607_SNP [dm3] X_19865574_SNP [dm6]	T	G	1.864e^-4	0.988	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h
X	5549276	X_5549276_SNP [dm3] X_5655243_SNP [dm6]	A	G	1.879e^-4	0.988	INTRON CG42265
3R	22408688	3R_22408688_SNP [dm3] 3R_26582966_SNP [dm6]	C	T	1.879e^-4	0.988	UTR_3_PRIME scrib INTRON scrib
2L	5169440	2L_5169440_SNP [dm3] 2L_5169440_SNP [dm6]	T	C	1.883e^-4	0.988	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	5561727	3L_5561727_SNP [dm3] 3L_5568627_SNP [dm6]	C	T	1.884e^-4	0.988	SYNONYMOUS_CODING Msr-110 UPSTREAM snmRNA:357	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20891586	X_20891586_SNP [dm3] X_21020559_SNP [dm6]	G	A	1.884e^-4	0.988	INTERGENIC
2L	10767973	2L_10767973_SNP [dm3] 2L_10767973_SNP [dm6]	G	A	1.886e^-4	0.988	UTR_5_PRIME UbcD2 UPSTREAM UbcD2 DOWNSTREAM CG6724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2R	19251223	2R_19251223_SNP [dm3] 2R_23363700_SNP [dm6]	G	T	1.895e^-4	0.988	NON_SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6676960	2R_6676960_SNP [dm3] 2R_10789455_SNP [dm6]	A	C	1.908e^-4	0.988	INTRON CG33144
2L	5169580	2L_5169580_SNP [dm3] 2L_5169580_SNP [dm6]	C	A	1.911e^-4	0.988	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	3803521	3R_3803521_SNP [dm3] 3R_7977799_SNP [dm6]	A	T	1.913e^-4	0.988	UPSTREAM CD98hc INTRON CD98hc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	3085650	2L_3085650_SNP [dm3] 2L_3085650_SNP [dm6]	A	T	1.918e^-4	0.988	INTRON toc
2R	18282810	2R_18282810_SNP [dm3] 2R_22395305_SNP [dm6]	C	A	1.932e^-4	0.988	INTRON babos
3R	9944937	3R_9944937_SNP [dm3] 3R_14119215_SNP [dm6]	C	A	1.943e^-4	0.988	UPSTREAM Kif19A DOWNSTREAM Abi INTERGENIC
2L	9952222	2L_9952222_SNP [dm3] 2L_9952222_SNP [dm6]	G	A	1.951e^-4	0.988	UTR_3_PRIME CG13126 DOWNSTREAM CG13126	TF binding site mE1_TFBS_inv
3L	10125502	3L_10125502_SNP [dm3] 3L_10132402_SNP [dm6]	G	A	1.962e^-4	0.988	INTRON dpr6
2R	20156803	2R_20156803_SNP [dm3] 2R_24269280_SNP [dm6]	T	G	1.963e^-4	0.988	UPSTREAM CG13577 INTERGENIC
X	8471378	X_8471378_SNP [dm3] X_8577345_SNP [dm6]	A	C	1.964e^-4	0.988	INTRON CG12065
2R	10245759	2R_10245759_SNP [dm3] 2R_14358254_SNP [dm6]	T	G	1.966e^-4	0.988	UTR_3_PRIME Arc1 UPSTREAM CG8617	TF binding site mE1_TFBS_chinmo
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	1.972e^-4	0.988	INTRON salm
2L	9875797	2L_9875797_SNP [dm3] 2L_9875797_SNP [dm6]	T	A	1.972e^-4	0.988	INTRON nAChRalpha6	TF binding site mE1_TFBS_inv
2L	3085583	2L_3085583_SNP [dm3] 2L_3085583_SNP [dm6]	A	T	1.981e^-4	0.988	INTRON toc
2R	7276553	2R_7276553_INS [dm3] 2R_11389048_INS [dm6]	G	GG	1.997e^-4	0.988	UPSTREAM CG30022 INTRON sprt
3R	14389129	3R_14389129_SNP [dm3] 3R_18563407_SNP [dm6]	T	A	2.006e^-4	0.988	DOWNSTREAM CG43210 & 1 other INTERGENIC
2R	12087184	2R_12087184_SNP [dm3] 2R_16199679_SNP [dm6]	C	G	2.006e^-4	0.988	UTR_3_PRIME shark DOWNSTREAM CG42837 & 1 other
2L	1978627	2L_1978627_SNP [dm3] 2L_1978627_SNP [dm6]	T	C	2.007e^-4	0.988	SYNONYMOUS_CODING CG15356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13695107	3R_13695107_SNP [dm3] 3R_17869385_SNP [dm6]	T	A	2.021e^-4	0.988	INTRON tinc	TF binding site mE1_TFBS_chinmo
2R	9840335	2R_9840335_SNP [dm3] 2R_13952830_SNP [dm6]	C	T	2.039e^-4	0.988	INTRON AGO1	TF binding site BDTNP1_TFBS_dl
3R	12153082	3R_12153082_SNP [dm3] 3R_16327360_SNP [dm6]	T	G	2.043e^-4	0.988	UPSTREAM CG17930 DOWNSTREAM CG17929 INTRON Sulf1
2L	21105448	2L_21105448_SNP [dm3] 2L_21105448_SNP [dm6]	T	G	2.051e^-4	0.988	INTRON Nhe2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9378420	2L_9378420_SNP [dm3] 2L_9378420_SNP [dm6]	G	A	2.056e^-4	0.988	INTRON Shawl
2L	5463487	2L_5463487_SNP [dm3] 2L_5463487_SNP [dm6]	G	A	2.056e^-4	0.988	INTRON mid
X	6453827	X_6453827_SNP [dm3] X_6559794_SNP [dm6]	G	A	2.065e^-4	0.988	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3125700	2L_3125700_SNP [dm3] 2L_3125700_SNP [dm6]	C	T	2.068e^-4	0.988	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2708000	2L_2708000_SNP [dm3] 2L_2708000_SNP [dm6]	A	T	2.085e^-4	0.988	INTRON CG31690
2R	7047237	2R_7047237_SNP [dm3] 2R_11159732_SNP [dm6]	C	A	2.101e^-4	0.988	INTRON CG13229 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	10229225	2R_10229225_SNP [dm3] 2R_14341720_SNP [dm6]	A	G	2.106e^-4	0.988	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl
X	6306713	X_6306713_SNP [dm3] X_6412680_SNP [dm6]	C	A	2.112e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13974061	2R_13974061_SNP [dm3] 2R_18086556_SNP [dm6]	G	A	2.115e^-4	0.988	INTRON CG34386
3R	7735135	3R_7735135_DEL [dm3] 3R_11909413_DEL [dm6]	CACCCGATAATTTCCCTTCG...	C	2.122e^-4	0.988	INTRON Cad87A	TF binding site mE1_TFBS_HSA
3L	10532079	3L_10532079_SNP [dm3] 3L_10538979_SNP [dm6]	C	A	2.128e^-4	0.988	INTRON A2bp1
2L	11669246	2L_11669246_SNP [dm3] 2L_11669246_SNP [dm6]	T	C	2.128e^-4	0.988	INTERGENIC
X	19759872	X_19759872_SNP [dm3] X_19865839_SNP [dm6]	G	A	2.132e^-4	0.988	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	2907622	2R_2907622_SNP [dm3] 2R_7020117_SNP [dm6]	T	C	2.133e^-4	0.988	UPSTREAM CG43647 DOWNSTREAM CG43646 INTERGENIC
2R	6922672	2R_6922672_SNP [dm3] 2R_11035167_SNP [dm6]	A	T	2.141e^-4	0.988	INTRON luna	TF binding site mE1_TFBS_cad
2L	11667556	2L_11667556_SNP [dm3] 2L_11667556_SNP [dm6]	C	G	2.144e^-4	0.988	INTERGENIC
3R	12938488	3R_12938488_SNP [dm3] 3R_17112766_SNP [dm6]	G	C	2.172e^-4	0.988	INTRON cher	TF binding site mE1_TFBS_cnc
2L	1605965	2L_1605965_SNP [dm3] 2L_1605965_SNP [dm6]	A	G	2.172e^-4	0.988	INTRON CG31935 & 1 other
3L	12834469	3L_12834469_INS [dm3] 3L_12841369_INS [dm6]	A	AA	2.175e^-4	0.988	INTRON CG10960
2L	3229952	2L_3229952_SNP [dm3] 2L_3229952_SNP [dm6]	A	C	2.176e^-4	0.988	INTERGENIC
X	8465719	X_8465719_SNP [dm3] X_8571686_SNP [dm6]	T	C	2.185e^-4	0.988	SYNONYMOUS_CODING spirit UPSTREAM CG12111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5169838	2L_5169838_SNP [dm3] 2L_5169838_SNP [dm6]	C	T	2.189e^-4	0.988	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	12050050	3L_12050050_SNP [dm3] 3L_12056950_SNP [dm6]	C	T	2.192e^-4	0.988	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19077447	2R_19077447_SNP [dm3] 2R_23189924_SNP [dm6]	C	T	2.193e^-4	0.988	INTRON CG34371	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	16698041	X_16698041_DEL [dm3] X_16804008_DEL [dm6]	TA	T	2.194e^-4	0.988	UPSTREAM CG9125 INTRON CG13005	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	8101314	3R_8101314_SNP [dm3] 3R_12275592_SNP [dm6]	G	A	2.194e^-4	0.988	INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	26936801	3R_26936801_SNP [dm3] 3R_31111079_SNP [dm6]	G	A	2.215e^-4	0.988	INTERGENIC
3R	18246640	3R_18246640_SNP [dm3] 3R_22420918_SNP [dm6]	A	C	2.222e^-4	0.988	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9982629	2L_9982629_SNP [dm3] 2L_9982629_SNP [dm6]	T	G	2.223e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
2L	21155658	2L_21155658_SNP [dm3] 2L_21155658_SNP [dm6]	C	T	2.224e^-4	0.988	SYNONYMOUS_CODING E2f2 UPSTREAM Mpp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	4611688	2L_4611688_SNP [dm3] 2L_4611688_SNP [dm6]	A	G	2.228e^-4	0.988	INTRON dp	TF binding site mE1_TFBS_kn
3R	26182438	3R_26182438_SNP [dm3] 3R_30356716_SNP [dm6]	T	C	2.231e^-4	0.988	INTRON hdc
3L	4837874	3L_4837874_SNP [dm3] 3L_4837874_SNP [dm6]	C	A	2.244e^-4	0.988	UTR_3_PRIME CG13707
2L	7768006	2L_7768006_SNP [dm3] 2L_7768006_SNP [dm6]	G	T	2.249e^-4	0.988	INTRON CG7191
X	2236434	X_2236434_SNP [dm3] X_2342401_SNP [dm6]	A	C	2.250e^-4	0.988	INTRON phl	TF binding site BDTNP1_TFBS_dl
2L	5169427	2L_5169427_SNP [dm3] 2L_5169427_SNP [dm6]	G	A	2.253e^-4	0.988	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	6353929	2L_6353929_SNP [dm3] 2L_6353929_SNP [dm6]	T	C	2.259e^-4	0.988	NON_SYNONYMOUS_CODING ppk7	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15131659	2R_15131659_SNP [dm3] 2R_19244154_SNP [dm6]	A	G	2.260e^-4	0.988	DOWNSTREAM cora INTERGENIC
2R	14478382	2R_14478382_SNP [dm3] 2R_18590877_SNP [dm6]	T	C	2.261e^-4	0.988	INTRON GEFmeso
3L	2666524	3L_2666524_SNP [dm3] 3L_2666524_SNP [dm6]	C	T	2.264e^-4	0.988	SYNONYMOUS_CODING Fife	TF binding site mE1_TFBS_chinmo
2R	20475394	2R_20475394_SNP [dm3] 2R_24587871_SNP [dm6]	A	G	2.270e^-4	0.988	INTRON pio
X	19759730	X_19759730_SNP [dm3] X_19865697_SNP [dm6]	C	T	2.272e^-4	0.988	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_Ubx
2L	14265898	2L_14265898_SNP [dm3] 2L_14265898_SNP [dm6]	T	G	2.276e^-4	0.988	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	25473897	3R_25473897_SNP [dm3] 3R_29648175_SNP [dm6]	A	T	2.281e^-4	0.988	INTRON Dop1R2
X	15810745	X_15810745_SNP [dm3] X_15916712_SNP [dm6]	T	C	2.292e^-4	0.988	INTRON CG8909	TF binding site BDTNP1_TFBS_twi
2R	16467558	2R_16467558_SNP [dm3] 2R_20580053_SNP [dm6]	T	C	2.301e^-4	0.988	INTRON qsm
2R	7049962	2R_7049962_SNP [dm3] 2R_11162457_SNP [dm6]	T	C	2.314e^-4	0.988	INTRON shn & 1 other
2L	10768201	2L_10768201_SNP [dm3] 2L_10768201_SNP [dm6]	G	T	2.320e^-4	0.988	UPSTREAM UbcD2 DOWNSTREAM CG6724 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3L	13386215	3L_13386215_SNP [dm3] 3L_13393115_SNP [dm6]	C	A	2.338e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	18274097	3L_18274097_SNP [dm3] 3L_18280997_SNP [dm6]	G	T	2.352e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13431600	3R_13431600_SNP [dm3] 3R_17605878_SNP [dm6]	T	C	2.352e^-4	0.988	UPSTREAM sll INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	9742814	3R_9742814_SNP [dm3] 3R_13917092_SNP [dm6]	G	A	2.370e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	20195969	2R_20195969_SNP [dm3] 2R_24308446_SNP [dm6]	C	A	2.382e^-4	0.988	INTRON betaTub60D	regulatory region REDfly_CRMs
2R	14436243	2R_14436243_SNP [dm3] 2R_18548738_SNP [dm6]	T	C	2.385e^-4	0.988	UTR_3_PRIME Rgk2	TF binding site mE1_TFBS_cad
3R	21845761	3R_21845761_INS [dm3] 3R_26020039_INS [dm6]	A	AA	2.386e^-4	0.988	UPSTREAM CR43643 DOWNSTREAM CR43644 INTERGENIC
2L	22020382	2L_22020382_SNP [dm3] 2L_22020382_SNP [dm6]	G	T	2.389e^-4	0.988	DOWNSTREAM CR33987 INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	8914043	X_8914043_SNP [dm3] X_9020010_SNP [dm6]	T	A	2.401e^-4	0.988	SYNONYMOUS_CODING rdgA INTRON CR43836
2L	2928942	2L_2928942_SNP [dm3] 2L_2928942_SNP [dm6]	G	C	2.408e^-4	0.988	INTRON lilli
3L	1993203	3L_1993203_SNP [dm3] 3L_1993203_SNP [dm6]	A	G	2.414e^-4	0.988	INTERGENIC
2R	18474773	2R_18474773_SNP [dm3] 2R_22587268_SNP [dm6]	G	A	2.421e^-4	0.988	INTRON dnr1
2R	6285407	2R_6285407_SNP [dm3] 2R_10397902_SNP [dm6]	G	A	2.422e^-4	0.988	INTRON CG42732
2R	19246063	2R_19246063_SNP [dm3] 2R_23358540_SNP [dm6]	C	T	2.427e^-4	0.988	UPSTREAM CG3500 & 2 others DOWNSTREAM CG9875 EXON CR44168
3R	5085234	3R_5085234_DEL [dm3] 3R_9259512_DEL [dm6]	ATA	A	2.431e^-4	0.988	INTRON CG8436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21138675	2L_21138675_SNP [dm3] 2L_21138675_SNP [dm6]	C	A	2.432e^-4	0.988	INTRON Dap160	TF binding site mE1_TFBS_cad
2L	21169598	2L_21169598_SNP [dm3] 2L_21169598_SNP [dm6]	A	T	2.432e^-4	0.988	INTRON Acon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_ttk
3R	16128911	3R_16128911_SNP [dm3] 3R_20303189_SNP [dm6]	G	A	2.433e^-4	0.988	UTR_3_PRIME cic DOWNSTREAM CG4367
3R	23161933	3R_23161933_SNP [dm3] 3R_27336211_SNP [dm6]	T	A	2.434e^-4	0.988	INTERGENIC
3R	20415401	3R_20415401_SNP [dm3] 3R_24589679_SNP [dm6]	C	T	2.439e^-4	0.988	INTRON mld	TF binding site mE1_TFBS_HSA
2R	13887578	2R_13887578_SNP [dm3] 2R_18000073_SNP [dm6]	A	G	2.442e^-4	0.988	INTRON dpr13
3R	23421655	3R_23421655_SNP [dm3] 3R_27595933_SNP [dm6]	G	T	2.448e^-4	0.988	UTR_5_PRIME CG5639	TF binding site mE1_TFBS_inv
X	5039294	X_5039294_SNP [dm3] X_5145261_SNP [dm6]	C	G	2.453e^-4	0.988	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
2R	2425777	2R_2425777_SNP [dm3] 2R_6538272_SNP [dm6]	A	G	2.455e^-4	0.988	INTRON jing
3R	23560808	3R_23560808_SNP [dm3] 3R_27735086_SNP [dm6]	T	A	2.455e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6139627	X_6139627_SNP [dm3] X_6245594_SNP [dm6]	A	G	2.456e^-4	0.988	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6729614	X_6729614_SNP [dm3] X_6835581_SNP [dm6]	C	T	2.463e^-4	0.988	NON_SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8214415	3R_8214415_SNP [dm3] 3R_12388693_SNP [dm6]	T	A	2.464e^-4	0.988	UTR_3_PRIME CG33098 UPSTREAM CG34402 DOWNSTREAM CG33098 INTRON CG34402
2L	11442707	2L_11442707_SNP [dm3] 2L_11442707_SNP [dm6]	A	C	2.464e^-4	0.988	INTRON salm
2L	9982741	2L_9982741_SNP [dm3] 2L_9982741_SNP [dm6]	A	T	2.469e^-4	0.988	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	14265906	2L_14265906_SNP [dm3] 2L_14265906_SNP [dm6]	T	C	2.470e^-4	0.988	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	13316115	3L_13316115_SNP [dm3] 3L_13323015_SNP [dm6]	G	A	2.477e^-4	0.988	INTERGENIC
2R	12969265	2R_12969265_SNP [dm3] 2R_17081760_SNP [dm6]	G	A	2.480e^-4	0.988	UTR_5_PRIME CG30460
2L	5169453	2L_5169453_SNP [dm3] 2L_5169453_SNP [dm6]	T	A	2.485e^-4	0.988	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	15518713	3L_15518713_SNP [dm3] 3L_15525613_SNP [dm6]	A	G	2.492e^-4	0.988	UPSTREAM CG33986 DOWNSTREAM CG33985 INTERGENIC
3R	14462144	3R_14462144_SNP [dm3] 3R_18636422_SNP [dm6]	T	G	2.509e^-4	0.988	INTRON qin & 1 other
3R	9961266	3R_9961266_SNP [dm3] 3R_14135544_SNP [dm6]	T	C	2.510e^-4	0.988	INTERGENIC
2L	21095582	2L_21095582_SNP [dm3] 2L_21095582_SNP [dm6]	A	T	2.511e^-4	0.988	DOWNSTREAM CG14397 INTRON CG12050
2L	21098057	2L_21098057_SNP [dm3] 2L_21098057_SNP [dm6]	T	G	2.511e^-4	0.988	INTRON CG12050 & 1 other
2L	9982694	2L_9982694_SNP [dm3] 2L_9982694_SNP [dm6]	C	A	2.515e^-4	0.988	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2R	14769413	2R_14769413_SNP [dm3] 2R_18881908_SNP [dm6]	C	T	2.524e^-4	0.988	INTRON sano	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13386188	3L_13386188_SNP [dm3] 3L_13393088_SNP [dm6]	A	T	2.533e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	6873441	2R_6873441_SNP [dm3] 2R_10985936_SNP [dm6]	A	T	2.544e^-4	0.988	INTRON luna
2R	17789886	2R_17789886_SNP [dm3] 2R_21902381_SNP [dm6]	C	G	2.551e^-4	0.988	INTRON Fili
3L	19969059	3L_19969059_SNP [dm3] 3L_19975959_SNP [dm6]	G	T	2.559e^-4	0.988	INTRON Ac76E
2L	745579	2L_745579_SNP [dm3] 2L_745579_SNP [dm6]	C	A	2.567e^-4	0.988	INTERGENIC
3R	19915362	3R_19915362_SNP [dm3] 3R_24089640_SNP [dm6]	G	A	2.578e^-4	0.988	INTRON 4EHP
2R	10448074	2R_10448074_SNP [dm3] 2R_14560569_SNP [dm6]	A	G	2.579e^-4	0.988	INTRON ttv
2L	9982705	2L_9982705_SNP [dm3] 2L_9982705_SNP [dm6]	T	G	2.586e^-4	0.988	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3R	18246604	3R_18246604_SNP [dm3] 3R_22420882_SNP [dm6]	G	A	2.601e^-4	0.988	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12559969	3L_12559969_SNP [dm3] 3L_12566869_SNP [dm6]	C	A	2.609e^-4	0.988	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21126458	2L_21126458_SNP [dm3] 2L_21126458_SNP [dm6]	A	T	2.612e^-4	0.988	INTRON Nhe2
3L	10386227	3L_10386227_SNP [dm3] 3L_10393127_SNP [dm6]	C	T	2.623e^-4	0.988	INTERGENIC
2L	1049578	2L_1049578_SNP [dm3] 2L_1049578_SNP [dm6]	A	G	2.631e^-4	0.988	DOWNSTREAM S INTERGENIC
2R	10555639	2R_10555639_SNP [dm3] 2R_14668134_SNP [dm6]	C	T	2.644e^-4	0.988	UPSTREAM CG12866 INTERGENIC
3R	8396704	3R_8396704_SNP [dm3] 3R_12570982_SNP [dm6]	A	G	2.650e^-4	0.988	INTRON Octbeta2R
2R	11999685	2R_11999685_SNP [dm3] 2R_16112180_SNP [dm6]	T	A	2.655e^-4	0.988	INTRON Asph
2R	11999691	2R_11999691_SNP [dm3] 2R_16112186_SNP [dm6]	C	A	2.655e^-4	0.988	INTRON Asph
2R	11999694	2R_11999694_SNP [dm3] 2R_16112189_SNP [dm6]	T	A	2.655e^-4	0.988	SPLICE_SITE_REGION Asph INTRON Asph
2L	21173509	2L_21173509_SNP [dm3] 2L_21173509_SNP [dm6]	G	A	2.662e^-4	0.988	SYNONYMOUS_CODING CG31627 DOWNSTREAM Acon & 1 other
2R	20196040	2R_20196040_SNP [dm3] 2R_24308517_SNP [dm6]	T	C	2.672e^-4	0.988	INTRON betaTub60D	regulatory region REDfly_CRMs
2L	10703661	2L_10703661_SNP [dm3] 2L_10703661_SNP [dm6]	G	A	2.689e^-4	0.988	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
2L	9982684	2L_9982684_DEL [dm3] 2L_9982684_DEL [dm6]	ACTTCTTC	G	2.693e^-4	0.988	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	9982717	2L_9982717_DEL [dm3] 2L_9982717_DEL [dm6]	TCCTTC	T	2.693e^-4	0.988	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2R	6676295	2R_6676295_SNP [dm3] 2R_10788790_SNP [dm6]	C	T	2.717e^-4	0.988	INTRON CG33144
X	15369912	X_15369912_SNP [dm3] X_15475879_SNP [dm6]	C	T	2.721e^-4	0.988	UPSTREAM CG6324 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	2.734e^-4	0.988	INTRON salm
3R	18249849	3R_18249849_SNP [dm3] 3R_22424127_SNP [dm6]	T	C	2.752e^-4	0.988	DOWNSTREAM mats INTRON pinta
X	10210232	X_10210232_SNP [dm3] X_10316199_SNP [dm6]	G	T	2.754e^-4	0.988	INTRON alpha-Man-I
3L	13316128	3L_13316128_SNP [dm3] 3L_13323028_SNP [dm6]	A	G	2.754e^-4	0.988	INTERGENIC
X	6879893	X_6879893_SNP [dm3] X_6985860_SNP [dm6]	T	A	2.754e^-4	0.988	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	13385908	3L_13385908_SNP [dm3] 3L_13392808_SNP [dm6]	C	T	2.771e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	18666490	3R_18666490_SNP [dm3] 3R_22840768_SNP [dm6]	T	A	2.773e^-4	0.988	INTERGENIC
2R	8632502	2R_8632502_SNP [dm3] 2R_12744997_SNP [dm6]	C	T	2.775e^-4	0.988	INTRON CG42663	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10797882	2L_10797882_SNP [dm3] 2L_10797882_SNP [dm6]	C	T	2.776e^-4	0.988	INTRON CG31869
2R	7048939	2R_7048939_SNP [dm3] 2R_11161434_SNP [dm6]	A	C	2.784e^-4	0.988	INTRON shn & 1 other	TF binding site mE1_TFBS_inv
2R	10229304	2R_10229304_SNP [dm3] 2R_14341799_SNP [dm6]	A	G	2.789e^-4	0.988	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl
3L	15697605	3L_15697605_SNP [dm3] 3L_15704505_SNP [dm6]	T	C	2.791e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6897141	2R_6897141_SNP [dm3] 2R_11009636_SNP [dm6]	A	C	2.792e^-4	0.988	INTRON luna	TF binding site mE1_TFBS_inv
3R	25654921	3R_25654921_DEL [dm3] 3R_29829199_DEL [dm6]	TT	T	2.799e^-4	0.988	INTRON Atg16	enhancer mE1_CBP_Enhancers
X	13606629	X_13606629_SNP [dm3] X_13712596_SNP [dm6]	A	G	2.809e^-4	0.988	INTRON CG9940 & 1 other
2L	1662422	2L_1662422_SNP [dm3] 2L_1662422_SNP [dm6]	T	A	2.812e^-4	0.988	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10825197	2L_10825197_SNP [dm3] 2L_10825197_SNP [dm6]	T	A	2.817e^-4	0.988	INTRON Nos
2L	9972365	2L_9972365_SNP [dm3] 2L_9972365_SNP [dm6]	T	C	2.822e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9972366	2L_9972366_SNP [dm3] 2L_9972366_SNP [dm6]	G	C	2.822e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26152409	3R_26152409_DEL [dm3] 3R_30326687_DEL [dm6]	CCCGAC	C	2.828e^-4	0.988	INTRON hdc
2L	9982648	2L_9982648_SNP [dm3] 2L_9982648_SNP [dm6]	A	G	2.843e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
3R	8160719	3R_8160719_SNP [dm3] 3R_12334997_SNP [dm6]	A	G	2.844e^-4	0.988	UPSTREAM CR44941 INTERGENIC
2R	19237829	2R_19237829_SNP [dm3] 2R_23350306_SNP [dm6]	A	T	2.852e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6385666	2R_6385666_SNP [dm3] 2R_10498161_SNP [dm6]	G	C	2.855e^-4	0.988	INTRON lola
3L	4818886	3L_4818886_SNP [dm3] 3L_4818886_SNP [dm6]	T	C	2.864e^-4	0.988	SYNONYMOUS_CODING Dhc64C
2L	12136338	2L_12136338_SNP [dm3] 2L_12136338_SNP [dm6]	A	C	2.867e^-4	0.988	INTERGENIC
2L	11476215	2L_11476215_SNP [dm3] 2L_11476215_SNP [dm6]	G	A	2.870e^-4	0.988	INTERGENIC
X	19761612	X_19761612_SNP [dm3] X_19867579_SNP [dm6]	C	T	2.874e^-4	0.988	INTRON Hers	TF binding site BDTNP1_TFBS_dl
2R	20195968	2R_20195968_SNP [dm3] 2R_24308445_SNP [dm6]	A	C	2.874e^-4	0.988	INTRON betaTub60D	regulatory region REDfly_CRMs
3R	14728529	3R_14728529_SNP [dm3] 3R_18902807_SNP [dm6]	A	T	2.884e^-4	0.988	UPSTREAM CG14294 INTRON CG34284	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8718002	2R_8718002_SNP [dm3] 2R_12830497_SNP [dm6]	A	G	2.884e^-4	0.988	INTERGENIC
3L	8912437	3L_8912437_SNP [dm3] 3L_8919337_SNP [dm6]	T	C	2.892e^-4	0.988	INTRON Tsp66E
2L	4493495	2L_4493495_SNP [dm3] 2L_4493495_SNP [dm6]	G	A	2.895e^-4	0.988	NON_SYNONYMOUS_CODING dp INTRON dp
3L	16101579	3L_16101579_SNP [dm3] 3L_16108479_SNP [dm6]	G	C	2.897e^-4	0.988	UTR_3_PRIME Zn72D INTRON Zn72D
3R	16351460	3R_16351460_SNP [dm3] 3R_20525738_SNP [dm6]	C	T	2.907e^-4	0.988	INTERGENIC
3R	26762738	3R_26762738_SNP [dm3] 3R_30937016_SNP [dm6]	T	C	2.907e^-4	0.988	NON_SYNONYMOUS_CODING CG15550 UPSTREAM CG15549	TF binding site mE1_TFBS_chinmo
3R	13947370	3R_13947370_SNP [dm3] 3R_18121648_SNP [dm6]	C	T	2.912e^-4	0.988	UPSTREAM sr INTRON sr	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19814367	2R_19814367_SNP [dm3] 2R_23926844_SNP [dm6]	C	A	2.920e^-4	0.988	UTR_3_PRIME Ca-P60A & 1 other DOWNSTREAM Ca-P60A	TF binding site mE1_TFBS_cad
3L	7217556	3L_7217556_SNP [dm3] 3L_7224456_SNP [dm6]	T	A	2.921e^-4	0.988	DOWNSTREAM CR45410 INTERGENIC
3R	20913489	3R_20913489_SNP [dm3] 3R_25087767_SNP [dm6]	G	C	2.924e^-4	0.988	INTERGENIC
X	18173250	X_18173250_SNP [dm3] X_18279217_SNP [dm6]	T	C	2.935e^-4	0.988	INTRON upd3
X	19761765	X_19761765_SNP [dm3] X_19867732_SNP [dm6]	A	C	2.937e^-4	0.988	INTRON Hers	TF binding site BDTNP1_TFBS_dl
2R	14494171	2R_14494171_SNP [dm3] 2R_18606666_SNP [dm6]	G	A	2.953e^-4	0.988	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2L	2293457	2L_2293457_SNP [dm3] 2L_2293457_SNP [dm6]	A	G	2.955e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13105661	3L_13105661_SNP [dm3] 3L_13112561_SNP [dm6]	C	T	2.964e^-4	0.988	INTERGENIC
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	2.975e^-4	0.988	INTERGENIC
3R	14471587	3R_14471587_SNP [dm3] 3R_18645865_SNP [dm6]	G	T	2.982e^-4	0.988	SYNONYMOUS_CODING qin
2L	11407350	2L_11407350_SNP [dm3] 2L_11407350_SNP [dm6]	T	C	2.993e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
2L	21125185	2L_21125185_SNP [dm3] 2L_21125185_SNP [dm6]	C	A	2.994e^-4	0.988	INTRON Nhe2
3L	1235239	3L_1235239_SNP [dm3] 3L_1235239_SNP [dm6]	C	A	3.002e^-4	0.988	UTR_3_PRIME CG33966 UPSTREAM CR45747 & 1 other
3R	12016416	3R_12016416_SNP [dm3] 3R_16190694_SNP [dm6]	A	G	3.003e^-4	0.988	INTRON sra
2R	7050218	2R_7050218_SNP [dm3] 2R_11162713_SNP [dm6]	C	T	3.010e^-4	0.988	INTRON shn & 1 other
3L	11801130	3L_11801130_SNP [dm3] 3L_11808030_SNP [dm6]	A	C	3.027e^-4	0.988	NON_SYNONYMOUS_CODING CG42255
3L	2548067	3L_2548067_SNP [dm3] 3L_2548067_SNP [dm6]	G	A	3.028e^-4	0.988	INTRON Spn
2R	18015420	2R_18015420_SNP [dm3] 2R_22127915_SNP [dm6]	T	C	3.030e^-4	0.988	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D
3L	12553874	3L_12553874_SNP [dm3] 3L_12560774_SNP [dm6]	C	T	3.034e^-4	0.988	INTRON sowah
2L	3085615	2L_3085615_INS [dm3] 2L_3085615_INS [dm6]	T	TGTGAAAGCACAAGTAGTAG...	3.035e^-4	0.988	INTRON toc
2R	7406958	2R_7406958_SNP [dm3] 2R_11519453_SNP [dm6]	G	A	3.053e^-4	0.988	INTERGENIC
3L	13386087	3L_13386087_SNP [dm3] 3L_13392987_SNP [dm6]	C	A	3.054e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9041154	2R_9041154_SNP [dm3] 2R_13153649_SNP [dm6]	C	T	3.057e^-4	0.988	SYNONYMOUS_CODING TppII UPSTREAM Ack-like	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13884984	2R_13884984_SNP [dm3] 2R_17997479_SNP [dm6]	T	C	3.059e^-4	0.988	INTRON dpr13
2L	18754466	2L_18754466_SNP [dm3] 2L_18754466_SNP [dm6]	G	A	3.062e^-4	0.988	INTERGENIC
X	11072212	X_11072212_SNP [dm3] X_11178179_SNP [dm6]	C	A	3.070e^-4	0.988	INTERGENIC
3L	5524420	3L_5524420_SNP [dm3] 3L_5531320_SNP [dm6]	A	C	3.073e^-4	0.988	INTERGENIC
2L	11903898	2L_11903898_SNP [dm3] 2L_11903898_SNP [dm6]	C	T	3.079e^-4	0.988	INTRON Pde1c
2L	7403408	2L_7403408_SNP [dm3] 2L_7403408_SNP [dm6]	C	T	3.080e^-4	0.988	INTRON CG5171
2L	4681185	2L_4681185_DEL [dm3] 2L_4681185_DEL [dm6]	AAAGATAACAA...	A	3.083e^-4	0.988	INTERGENIC
2R	13349884	2R_13349884_DEL [dm3] 2R_17462379_DEL [dm6]	GAG	G	3.089e^-4	0.988	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6989738	2L_6989738_SNP [dm3] 2L_6989738_SNP [dm6]	C	T	3.090e^-4	0.988	INTRON uif
2L	18563607	2L_18563607_SNP [dm3] 2L_18563607_SNP [dm6]	A	T	3.093e^-4	0.988	UPSTREAM Pde11 INTRON Pde11	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	13431324	3R_13431324_SNP [dm3] 3R_17605602_SNP [dm6]	C	T	3.097e^-4	0.988	UPSTREAM sll INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	10318193	2R_10318193_SNP [dm3] 2R_14430688_SNP [dm6]	A	G	3.098e^-4	0.988	INTRON phyl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13941400	3R_13941400_SNP [dm3] 3R_18115678_SNP [dm6]	T	C	3.107e^-4	0.988	INTRON sr
3L	15742296	3L_15742296_SNP [dm3] 3L_15749196_SNP [dm6]	A	G	3.113e^-4	0.988	DOWNSTREAM CR45240 INTERGENIC
2L	5169684	2L_5169684_SNP [dm3] 2L_5169684_SNP [dm6]	T	G	3.122e^-4	0.988	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	19515854	2R_19515854_SNP [dm3] 2R_23628331_SNP [dm6]	A	G	3.125e^-4	0.988	INTERGENIC
2R	8092696	2R_8092696_SNP [dm3] 2R_12205191_SNP [dm6]	C	A	3.138e^-4	0.988	UPSTREAM CR45276 INTERGENIC
2L	9982743	2L_9982743_SNP [dm3] 2L_9982743_SNP [dm6]	C	G	3.144e^-4	0.988	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3R	4567807	3R_4567807_SNP [dm3] 3R_8742085_SNP [dm6]	A	G	3.150e^-4	0.988	INTRON CG9801
3L	10232177	3L_10232177_SNP [dm3] 3L_10239077_SNP [dm6]	C	T	3.154e^-4	0.988	INTERGENIC
3R	9218415	3R_9218415_SNP [dm3] 3R_13392693_SNP [dm6]	T	C	3.166e^-4	0.988	INTRON CCHa2
2L	3085576	2L_3085576_SNP [dm3] 2L_3085576_SNP [dm6]	C	T	3.174e^-4	0.988	INTRON toc
3L	11017014	3L_11017014_SNP [dm3] 3L_11023914_SNP [dm6]	C	A	3.178e^-4	0.988	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11949253	2L_11949253_SNP [dm3] 2L_11949253_SNP [dm6]	G	T	3.191e^-4	0.988	DOWNSTREAM CG16964 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	15213107	3R_15213107_SNP [dm3] 3R_19387385_SNP [dm6]	T	C	3.191e^-4	0.988	UPSTREAM CG3734 INTRON Ino80 & 1 other
3L	15697589	3L_15697589_SNP [dm3] 3L_15704489_SNP [dm6]	C	T	3.193e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	8563109	X_8563109_INS [dm3] X_8669076_INS [dm6]	T	TCGGGAAT	3.195e^-4	0.988	INTERGENIC
2L	12592527	2L_12592527_SNP [dm3] 2L_12592527_SNP [dm6]	T	A	3.204e^-4	0.988	INTRON nub
2L	7211501	2L_7211501_SNP [dm3] 2L_7211501_SNP [dm6]	T	C	3.204e^-4	0.988	INTRON CG13784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21257905	3R_21257905_SNP [dm3] 3R_25432183_SNP [dm6]	T	A	3.210e^-4	0.988	INTRON Fur1
X	8117631	X_8117631_INS [dm3] X_8223598_INS [dm6]	T	TATTT	3.210e^-4	0.988	INTRON sdt	TF binding site mE1_TFBS_bab1
2L	21752322	2L_21752322_SNP [dm3] 2L_21752322_SNP [dm6]	G	T	3.218e^-4	0.988	INTRON step	TF binding site BDTNP1_TFBS_dl
3L	18759653	3L_18759653_SNP [dm3] 3L_18766553_SNP [dm6]	C	A	3.226e^-4	0.988	UPSTREAM ftz-f1 INTRON ftz-f1	TF binding site mE1_TFBS_HSA
3R	13735451	3R_13735451_SNP [dm3] 3R_17909729_SNP [dm6]	A	G	3.227e^-4	0.988	INTRON Rim	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	18274979	3L_18274979_SNP [dm3] 3L_18281879_SNP [dm6]	C	A	3.228e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26590068	3R_26590068_SNP [dm3] 3R_30764346_SNP [dm6]	C	A	3.238e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12609718	2R_12609718_SNP [dm3] 2R_16722213_SNP [dm6]	T	C	3.245e^-4	0.988	INTRON CG30463
2L	20419707	2L_20419707_SNP [dm3] 2L_20419707_SNP [dm6]	C	T	3.247e^-4	0.988	UPSTREAM snoRNA:Psi18S-525f & 1 other DOWNSTREAM snoRNA:Psi18S-525b & 5 others INTRON Arpc2 EXON snoRNA:Psi18S-640d
X	14501871	X_14501871_SNP [dm3] X_14607838_SNP [dm6]	T	C	3.248e^-4	0.988	INTRON NetA	TF binding site BDTNP1_TFBS_twi
X	10015874	X_10015874_SNP [dm3] X_10121841_SNP [dm6]	A	G	3.251e^-4	0.988	INTRON RhoU & 1 other EXON CR44894
3R	23840554	3R_23840554_SNP [dm3] 3R_28014832_SNP [dm6]	C	G	3.253e^-4	0.988	INTERGENIC
3L	18981088	3L_18981088_SNP [dm3] 3L_18987988_SNP [dm6]	T	C	3.257e^-4	0.988	SYNONYMOUS_CODING CG11619 DOWNSTREAM CG34256
3L	18819482	3L_18819482_SNP [dm3] 3L_18826382_SNP [dm6]	A	T	3.257e^-4	0.988	SYNONYMOUS_CODING Cat
3L	5416607	3L_5416607_SNP [dm3] 3L_5423507_SNP [dm6]	C	G	3.265e^-4	0.988	UPSTREAM CG34391 INTERGENIC
2R	12078105	2R_12078105_SNP [dm3] 2R_16190600_SNP [dm6]	T	C	3.268e^-4	0.988	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20476823	2R_20476823_SNP [dm3] 2R_24589300_SNP [dm6]	C	T	3.273e^-4	0.988	INTRON pio	TF binding site mE1_TFBS_chinmo
X	19761344	X_19761344_SNP [dm3] X_19867311_SNP [dm6]	G	A	3.273e^-4	0.988	INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3R	10235804	3R_10235804_SNP [dm3] 3R_14410082_SNP [dm6]	G	A	3.281e^-4	0.988	SYNONYMOUS_CODING cv-c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4218967	2L_4218967_SNP [dm3] 2L_4218967_SNP [dm6]	C	T	3.287e^-4	0.988	INTRON ft	TF binding site mE1_TFBS_HSA
3R	13924953	3R_13924953_SNP [dm3] 3R_18099231_SNP [dm6]	T	C	3.293e^-4	0.988	INTRON sr
2R	10195292	2R_10195292_SNP [dm3] 2R_14307787_SNP [dm6]	C	A	3.296e^-4	0.988	UPSTREAM Shroom INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1047134	3L_1047134_SNP [dm3] 3L_1047134_SNP [dm6]	G	A	3.299e^-4	0.988	INTRON bab1
2L	526398	2L_526398_INS [dm3] 2L_526398_INS [dm6]	A	ACAAGGGATCTCTA...	3.300e^-4	0.988	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
3R	14268597	3R_14268597_SNP [dm3] 3R_18442875_SNP [dm6]	T	A	3.301e^-4	0.988	INTRON fru
2L	6588649	2L_6588649_SNP [dm3] 2L_6588649_SNP [dm6]	G	A	3.304e^-4	0.988	INTRON CG11319
2L	9776717	2L_9776717_DEL [dm3] 2L_9776717_DEL [dm6]	GTGATTTG	G	3.307e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	26136151	3R_26136151_SNP [dm3] 3R_30310429_SNP [dm6]	C	G	3.320e^-4	0.988	INTRON hdc
3L	2914967	3L_2914967_SNP [dm3] 3L_2914967_SNP [dm6]	G	A	3.323e^-4	0.988	DOWNSTREAM CG9970 INTRON Shab
2R	13885114	2R_13885114_SNP [dm3] 2R_17997609_SNP [dm6]	T	C	3.332e^-4	0.988	INTRON dpr13
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	3.338e^-4	0.988	INTRON salm
3R	9682989	3R_9682989_SNP [dm3] 3R_13857267_SNP [dm6]	T	C	3.343e^-4	0.988	INTERGENIC
3R	18149162	3R_18149162_SNP [dm3] 3R_22323440_SNP [dm6]	G	C	3.350e^-4	0.988	INTRON CG34377
2L	10034869	2L_10034869_SNP [dm3] 2L_10034869_SNP [dm6]	T	A	3.351e^-4	0.988	INTRON obst-B
2L	17015515	2L_17015515_SNP [dm3] 2L_17015515_SNP [dm6]	T	G	3.351e^-4	0.988	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
X	5923071	X_5923071_SNP [dm3] X_6029038_SNP [dm6]	C	A	3.353e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7951730	3L_7951730_SNP [dm3] 3L_7958630_SNP [dm6]	G	T	3.373e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1685293	3L_1685293_SNP [dm3] 3L_1685293_SNP [dm6]	G	T	3.383e^-4	0.988	INTRON CG7991
3L	2306571	3L_2306571_SNP [dm3] 3L_2306571_SNP [dm6]	C	T	3.395e^-4	0.988	INTERGENIC
3L	16893968	3L_16893968_SNP [dm3] 3L_16900868_SNP [dm6]	T	C	3.402e^-4	0.988	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	6271140	2L_6271140_SNP [dm3] 2L_6271140_SNP [dm6]	C	T	3.404e^-4	0.988	INTRON Ddr EXON CR42735
3R	13924945	3R_13924945_SNP [dm3] 3R_18099223_SNP [dm6]	C	T	3.409e^-4	0.988	INTRON sr
2L	11972224	2L_11972224_SNP [dm3] 2L_11972224_SNP [dm6]	T	G	3.410e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
2L	14545652	2L_14545652_SNP [dm3] 2L_14545652_SNP [dm6]	G	T	3.420e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1036580	2L_1036580_SNP [dm3] 2L_1036580_SNP [dm6]	A	T	3.429e^-4	0.988	UPSTREAM CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_twi
2R	17568124	2R_17568124_SNP [dm3] 2R_21680619_SNP [dm6]	T	C	3.446e^-4	0.988	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_chinmo
3R	15325068	3R_15325068_SNP [dm3] 3R_19499346_SNP [dm6]	A	C	3.447e^-4	0.988	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
X	17654327	X_17654327_SNP [dm3] X_17760294_SNP [dm6]	G	T	3.453e^-4	0.988	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	17326589	2L_17326589_SNP [dm3] 2L_17326589_SNP [dm6]	G	A	3.454e^-4	0.988	INTERGENIC
2R	15410320	2R_15410320_SNP [dm3] 2R_19522815_SNP [dm6]	C	T	3.459e^-4	0.988	UTR_3_PRIME sm DOWNSTREAM sm
3R	4109269	3R_4109269_SNP [dm3] 3R_8283547_SNP [dm6]	T	A	3.462e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
2L	17568162	2L_17568162_SNP [dm3] 2L_17568162_SNP [dm6]	T	C	3.465e^-4	0.988	INTERGENIC
2L	21166673	2L_21166673_SNP [dm3] 2L_21166673_SNP [dm6]	C	T	3.467e^-4	0.988	UTR_5_PRIME CG43346 UTR_3_PRIME CG43345 UPSTREAM CG43346 DOWNSTREAM CG9246	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19407108	3R_19407108_SNP [dm3] 3R_23581386_SNP [dm6]	C	T	3.468e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13546162	2R_13546162_SNP [dm3] 2R_17658657_SNP [dm6]	G	A	3.469e^-4	0.988	INTRON CCHa1-R
3R	23759048	3R_23759048_SNP [dm3] 3R_27933326_SNP [dm6]	T	G	3.475e^-4	0.988	DOWNSTREAM mino INTRON Mes-4
3L	890981	3L_890981_SNP [dm3] 3L_890981_SNP [dm6]	G	A	3.476e^-4	0.988	UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18204852	2R_18204852_DEL [dm3] 2R_22317347_DEL [dm6]	TT	T	3.484e^-4	0.988	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	7402224	2L_7402224_SNP [dm3] 2L_7402224_SNP [dm6]	C	T	3.510e^-4	0.988	UPSTREAM CG5171 INTRON CG5171
2L	10890825	2L_10890825_SNP [dm3] 2L_10890825_SNP [dm6]	A	T	3.533e^-4	0.988	INTERGENIC
2R	8658856	2R_8658856_SNP [dm3] 2R_12771351_SNP [dm6]	T	C	3.538e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	9143032	2R_9143032_INS [dm3] 2R_13255527_INS [dm6]	T	TATTT	3.541e^-4	0.988	UPSTREAM CR44343 INTERGENIC
2L	7402148	2L_7402148_SNP [dm3] 2L_7402148_SNP [dm6]	C	T	3.544e^-4	0.988	UPSTREAM CG5171 INTRON CG5171
2R	7406935	2R_7406935_SNP [dm3] 2R_11519430_SNP [dm6]	G	A	3.544e^-4	0.988	INTERGENIC
X	10104525	X_10104525_SNP [dm3] X_10210492_SNP [dm6]	G	A	3.546e^-4	0.988	UPSTREAM CG15309 INTRON CG15309 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17571359	3R_17571359_SNP [dm3] 3R_21745637_SNP [dm6]	G	C	3.568e^-4	0.988	SYNONYMOUS_CODING CG31343	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12094523	3L_12094523_SNP [dm3] 3L_12101423_SNP [dm6]	C	A	3.572e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	7290386	2R_7290386_SNP [dm3] 2R_11402881_SNP [dm6]	A	G	3.572e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9982644	2L_9982644_SNP [dm3] 2L_9982644_SNP [dm6]	T	G	3.577e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
3L	5390657	3L_5390657_SNP [dm3] 3L_5397557_SNP [dm6]	T	G	3.581e^-4	0.988	INTERGENIC
2L	5180502	2L_5180502_SNP [dm3] 2L_5180502_SNP [dm6]	G	C	3.582e^-4	0.988	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
X	10432320	X_10432320_SNP [dm3] X_10538287_SNP [dm6]	C	T	3.597e^-4	0.988	INTRON spri	TF binding site BDTNP1_TFBS_da
2R	19187719	2R_19187719_SNP [dm3] 2R_23300196_SNP [dm6]	T	G	3.597e^-4	0.988	INTERGENIC
3R	18246792	3R_18246792_SNP [dm3] 3R_22421070_SNP [dm6]	A	G	3.613e^-4	0.988	UPSTREAM mats & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20543337	2L_20543337_SNP [dm3] 2L_20543337_SNP [dm6]	A	T	3.617e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20543349	2L_20543349_SNP [dm3] 2L_20543349_SNP [dm6]	G	C	3.617e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11903899	2L_11903899_SNP [dm3] 2L_11903899_SNP [dm6]	A	C	3.617e^-4	0.988	INTRON Pde1c
X	13486421	X_13486421_SNP [dm3] X_13592388_SNP [dm6]	G	T	3.618e^-4	0.988	UTR_3_PRIME Tango13 DOWNSTREAM Tango13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12923729	3L_12923729_SNP [dm3] 3L_12930629_SNP [dm6]	C	A	3.624e^-4	0.988	INTERGENIC
2R	18110109	2R_18110109_SNP [dm3] 2R_22222604_SNP [dm6]	A	G	3.631e^-4	0.988	SPLICE_SITE_REGION Oatp58Db INTRON Oatp58Db	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14151210	3L_14151210_SNP [dm3] 3L_14158110_SNP [dm6]	A	G	3.644e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
2L	9213161	2L_9213161_SNP [dm3] 2L_9213161_SNP [dm6]	C	T	3.644e^-4	0.988	INTRON tai
3L	14373342	3L_14373342_SNP [dm3] 3L_14380242_SNP [dm6]	A	T	3.651e^-4	0.988	INTERGENIC
3L	1259798	3L_1259798_SNP [dm3] 3L_1259798_SNP [dm6]	A	G	3.670e^-4	0.988	INTRON CG9134
2R	16694216	2R_16694216_DEL [dm3] 2R_20806711_DEL [dm6]	CCTGC	C	3.673e^-4	0.988	INTERGENIC
3L	18832616	3L_18832616_SNP [dm3] 3L_18839516_SNP [dm6]	C	T	3.682e^-4	0.988	INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18754162	2L_18754162_SNP [dm3] 2L_18754162_SNP [dm6]	T	A	3.683e^-4	0.988	INTERGENIC
3L	20036428	3L_20036428_SNP [dm3] 3L_20043328_SNP [dm6]	T	A	3.686e^-4	0.988	INTERGENIC
2R	8935042	2R_8935042_SNP [dm3] 2R_13047537_SNP [dm6]	T	C	3.693e^-4	0.988	UPSTREAM CG13323 INTERGENIC
3R	14654467	3R_14654467_SNP [dm3] 3R_18828745_SNP [dm6]	C	T	3.701e^-4	0.988	INTRON CG18208
3R	13205380	3R_13205380_SNP [dm3] 3R_17379658_SNP [dm6]	C	A	3.704e^-4	0.988	UPSTREAM lute INTRON Brf
3R	14389971	3R_14389971_SNP [dm3] 3R_18564249_SNP [dm6]	T	C	3.709e^-4	0.988	DOWNSTREAM CG43210 & 1 other INTERGENIC
3L	7217423	3L_7217423_SNP [dm3] 3L_7224323_SNP [dm6]	G	A	3.711e^-4	0.988	DOWNSTREAM CR45410 INTERGENIC
X	8075016	X_8075016_SNP [dm3] X_8180983_SNP [dm6]	G	T	3.712e^-4	0.988	INTRON sdt	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3R	10515286	3R_10515286_DEL [dm3] 3R_14689564_DEL [dm6]	GAAA	G	3.719e^-4	0.988	INTRON Meltrin
2L	10798828	2L_10798828_SNP [dm3] 2L_10798828_SNP [dm6]	A	T	3.726e^-4	0.988	INTRON CG31869
2R	19237762	2R_19237762_SNP [dm3] 2R_23350239_SNP [dm6]	T	A	3.730e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16711204	3R_16711204_SNP [dm3] 3R_20885482_SNP [dm6]	G	A	3.731e^-4	0.988	INTERGENIC
3L	3346155	3L_3346155_SNP [dm3] 3L_3346155_SNP [dm6]	A	C	3.732e^-4	0.988	INTRON kst
2R	18015452	2R_18015452_SNP [dm3] 2R_22127947_SNP [dm6]	A	G	3.732e^-4	0.988	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad
2R	13882708	2R_13882708_SNP [dm3] 2R_17995203_SNP [dm6]	T	A	3.733e^-4	0.988	INTRON dpr13
2L	2612354	2L_2612354_SNP [dm3] 2L_2612354_SNP [dm6]	T	C	3.746e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13639533	X_13639533_SNP [dm3] X_13745500_SNP [dm6]	G	A	3.748e^-4	0.988	UPSTREAM Grip91 DOWNSTREAM Pdcd4 & 1 other INTERGENIC
3R	22709235	3R_22709235_SNP [dm3] 3R_26883513_SNP [dm6]	T	A	3.750e^-4	0.988	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12746288	3L_12746288_SNP [dm3] 3L_12753188_SNP [dm6]	A	C	3.760e^-4	0.988	UTR_3_PRIME CG10984 DOWNSTREAM CG10973
3L	15745621	3L_15745621_SNP [dm3] 3L_15752521_SNP [dm6]	G	A	3.779e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	18248447	3L_18248447_SNP [dm3] 3L_18255347_SNP [dm6]	T	C	3.782e^-4	0.988	INTERGENIC
2L	262825	2L_262825_SNP [dm3] 2L_262825_SNP [dm6]	C	A	3.785e^-4	0.988	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 INTRON CG3645 EXON CR44219
3L	9580948	3L_9580948_SNP [dm3] 3L_9587848_SNP [dm6]	T	A	3.792e^-4	0.988	SYNONYMOUS_CODING CG42673 INTRON CG42673	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10676625	2L_10676625_SNP [dm3] 2L_10676625_SNP [dm6]	C	A	3.793e^-4	0.988	UPSTREAM CG17104 INTERGENIC
3R	9928353	3R_9928353_SNP [dm3] 3R_14102631_SNP [dm6]	G	C	3.797e^-4	0.988	SYNONYMOUS_CODING PK1-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1086972	2L_1086972_SNP [dm3] 2L_1086972_SNP [dm6]	A	G	3.806e^-4	0.988	INTRON CG4629
3R	8155806	3R_8155806_SNP [dm3] 3R_12330084_SNP [dm6]	T	A	3.809e^-4	0.988	EXON CR45583
2R	18273804	2R_18273804_SNP [dm3] 2R_22386299_SNP [dm6]	T	C	3.823e^-4	0.988	INTRON CG13506
3R	5865634	3R_5865634_SNP [dm3] 3R_10039912_SNP [dm6]	G	A	3.826e^-4	0.988	INTRON Mical
2L	14545957	2L_14545957_SNP [dm3] 2L_14545957_SNP [dm6]	T	C	3.827e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16112528	2L_16112528_SNP [dm3] 2L_16112528_SNP [dm6]	G	T	3.840e^-4	0.988	INTERGENIC
3L	3640874	3L_3640874_SNP [dm3] 3L_3640874_SNP [dm6]	C	T	3.853e^-4	0.988	INTRON dar1
2L	6017023	2L_6017023_SNP [dm3] 2L_6017023_SNP [dm6]	T	C	3.854e^-4	0.988	INTRON H2.0	TF binding site mE1_TFBS_inv
2L	4360550	2L_4360550_SNP [dm3] 2L_4360550_SNP [dm6]	C	A	3.858e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10155915	3L_10155915_SNP [dm3] 3L_10162815_SNP [dm6]	G	A	3.859e^-4	0.988	INTRON dpr10
3L	305608	3L_305608_SNP [dm3] 3L_305608_SNP [dm6]	C	A	3.867e^-4	0.988	UTR_3_PRIME fwd DOWNSTREAM fwd & 1 other
2L	6406929	2L_6406929_SNP [dm3] 2L_6406929_SNP [dm6]	G	A	3.867e^-4	0.988	INTRON CG42368
3L	17965561	3L_17965561_SNP [dm3] 3L_17972461_SNP [dm6]	A	C	3.869e^-4	0.988	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	12322413	3R_12322413_SNP [dm3] 3R_16496691_SNP [dm6]	T	C	3.873e^-4	0.988	INTERGENIC
2L	20549403	2L_20549403_SNP [dm3] 2L_20549403_SNP [dm6]	C	T	3.875e^-4	0.988	INTERGENIC
2L	20549405	2L_20549405_SNP [dm3] 2L_20549405_SNP [dm6]	C	G	3.875e^-4	0.988	INTERGENIC
X	7139271	X_7139271_SNP [dm3] X_7245238_SNP [dm6]	A	T	3.882e^-4	0.988	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
3L	16449650	3L_16449650_SNP [dm3] 3L_16456550_SNP [dm6]	A	T	3.899e^-4	0.988	INTRON CG33158
3L	1413251	3L_1413251_SNP [dm3] 3L_1413251_SNP [dm6]	G	A	3.902e^-4	0.988	DOWNSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	20913752	3R_20913752_SNP [dm3] 3R_25088030_SNP [dm6]	G	T	3.908e^-4	0.988	INTERGENIC
2L	21133311	2L_21133311_SNP [dm3] 2L_21133311_SNP [dm6]	C	G	3.909e^-4	0.988	UTR_3_PRIME Nhe2 DOWNSTREAM Nhe2
2R	5646275	2R_5646275_SNP [dm3] 2R_9758770_SNP [dm6]	G	A	3.918e^-4	0.988	UPSTREAM CG1690 INTRON trpl
2L	3382919	2L_3382919_SNP [dm3] 2L_3382919_SNP [dm6]	A	G	3.919e^-4	0.988	INTERGENIC
3L	3676796	3L_3676796_SNP [dm3] 3L_3676796_SNP [dm6]	G	T	3.924e^-4	0.988	INTERGENIC
3L	9219958	3L_9219958_SNP [dm3] 3L_9226858_SNP [dm6]	A	G	3.924e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14844619	3L_14844619_SNP [dm3] 3L_14851519_SNP [dm6]	G	T	3.939e^-4	0.988	INTRON CG17839
2L	14709995	2L_14709995_SNP [dm3] 2L_14709995_SNP [dm6]	C	T	3.941e^-4	0.988	INTERGENIC
2R	9320886	2R_9320886_INS [dm3] 2R_13433381_INS [dm6]	A	AGA	3.942e^-4	0.988	UPSTREAM Ser8 DOWNSTREAM tRNA:L3:49Fb INTRON CG42321 & 1 other
2L	21731620	2L_21731620_INS [dm3] 2L_21731620_INS [dm6]	G	GG	3.956e^-4	0.988	INTERGENIC	transposable element FlyBase
2L	4294765	2L_4294765_SNP [dm3] 2L_4294765_SNP [dm6]	G	A	3.961e^-4	0.988	INTRON tutl	TF binding site mE1_TFBS_chinmo
3R	14820268	3R_14820268_SNP [dm3] 3R_18994546_SNP [dm6]	T	C	3.967e^-4	0.988	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13316099	3L_13316099_SNP [dm3] 3L_13322999_SNP [dm6]	A	C	3.969e^-4	0.988	INTERGENIC
X	1623931	X_1623931_SNP [dm3] X_1729898_SNP [dm6]	A	G	3.973e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	1893590	X_1893590_SNP [dm3] X_1999557_SNP [dm6]	T	A	3.992e^-4	0.988	SYNONYMOUS_CODING Hr4	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	3813006	3R_3813006_SNP [dm3] 3R_7987284_SNP [dm6]	C	T	3.998e^-4	0.988	INTRON CG2781
3L	9979904	3L_9979904_SNP [dm3] 3L_9986804_SNP [dm6]	G	A	3.998e^-4	0.988	INTRON dpr6
2R	15173165	2R_15173165_DEL [dm3] 2R_19285660_DEL [dm6]	CGGA	C	3.999e^-4	0.988	UPSTREAM CG10476	TF binding site mE1_TFBS_cad
3L	19249319	3L_19249319_SNP [dm3] 3L_19256219_SNP [dm6]	G	A	4.004e^-4	0.988	SYNONYMOUS_CODING rept	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13606599	X_13606599_SNP [dm3] X_13712566_SNP [dm6]	G	A	4.007e^-4	0.988	INTRON CG9940 & 1 other
2R	16467546	2R_16467546_SNP [dm3] 2R_20580041_SNP [dm6]	A	G	4.009e^-4	0.988	INTRON qsm
2L	5169749	2L_5169749_SNP [dm3] 2L_5169749_SNP [dm6]	A	C	4.010e^-4	0.988	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	9423062	3L_9423062_SNP [dm3] 3L_9429962_SNP [dm6]	C	A	4.011e^-4	0.988	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2570472	2R_2570472_SNP [dm3] 2R_6682967_SNP [dm6]	T	A	4.012e^-4	0.988	UPSTREAM CG15909 DOWNSTREAM CR44164 INTRON CG9422 EXON CR44165
2R	20195943	2R_20195943_SNP [dm3] 2R_24308420_SNP [dm6]	A	G	4.020e^-4	0.988	INTRON betaTub60D	regulatory region REDfly_CRMs
3R	23338233	3R_23338233_SNP [dm3] 3R_27512511_SNP [dm6]	T	C	4.027e^-4	0.988	INTERGENIC
3R	25829159	3R_25829159_SNP [dm3] 3R_30003437_SNP [dm6]	T	C	4.035e^-4	0.988	DOWNSTREAM CG7911 INTRON Tace
2R	17819976	2R_17819976_SNP [dm3] 2R_21932471_SNP [dm6]	T	C	4.039e^-4	0.988	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16016325	3L_16016325_SNP [dm3] 3L_16023225_SNP [dm6]	G	T	4.040e^-4	0.988	UPSTREAM Notum INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14671241	3R_14671241_SNP [dm3] 3R_18845519_SNP [dm6]	C	T	4.040e^-4	0.988	INTRON CG18208
3L	4354621	3L_4354621_SNP [dm3] 3L_4354621_SNP [dm6]	T	C	4.041e^-4	0.988	INTRON Cip4
2R	8627750	2R_8627750_SNP [dm3] 2R_12740245_SNP [dm6]	A	T	4.057e^-4	0.988	INTRON CG42663
3L	13400551	3L_13400551_SNP [dm3] 3L_13407451_SNP [dm6]	G	T	4.061e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11381879	2L_11381879_SNP [dm3] 2L_11381879_SNP [dm6]	A	T	4.066e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
2L	5878017	2L_5878017_SNP [dm3] 2L_5878017_SNP [dm6]	G	C	4.094e^-4	0.988	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7401748	2L_7401748_SNP [dm3] 2L_7401748_SNP [dm6]	A	C	4.099e^-4	0.988	INTRON CG5171
2L	14693008	2L_14693008_SNP [dm3] 2L_14693008_SNP [dm6]	T	A	4.102e^-4	0.988	INTERGENIC
2L	261646	2L_261646_SNP [dm3] 2L_261646_SNP [dm6]	A	G	4.104e^-4	0.988	UTR_3_PRIME CG17075 UPSTREAM CR44219 INTRON CG3645
2L	9997643	2L_9997643_SNP [dm3] 2L_9997643_SNP [dm6]	T	C	4.128e^-4	0.988	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
3R	20283209	3R_20283209_SNP [dm3] 3R_24457487_SNP [dm6]	T	G	4.137e^-4	0.988	UPSTREAM nAChRalpha1 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16311468	2R_16311468_SNP [dm3] 2R_20423963_SNP [dm6]	T	G	4.149e^-4	0.988	UPSTREAM CG12484 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10250363	2R_10250363_SNP [dm3] 2R_14362858_SNP [dm6]	G	T	4.150e^-4	0.988	UPSTREAM Tfb1 DOWNSTREAM Arc2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7322749	2R_7322749_SNP [dm3] 2R_11435244_SNP [dm6]	G	A	4.151e^-4	0.988	UPSTREAM CG7777 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_ttk
2R	15173102	2R_15173102_DEL [dm3] 2R_19285597_DEL [dm6]	TTCGGAAGGAG...	T	4.156e^-4	0.988	FRAME_SHIFT CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173114	2R_15173114_DEL [dm3] 2R_19285609_DEL [dm6]	TTTCTC	T	4.156e^-4	0.988	FRAME_SHIFT CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173125	2R_15173125_SNP [dm3] 2R_19285620_SNP [dm6]	T	A	4.156e^-4	0.988	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173128	2R_15173128_DEL [dm3] 2R_19285623_DEL [dm6]	CTGA	C	4.156e^-4	0.988	CODON_DELETION CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173135	2R_15173135_SNP [dm3] 2R_19285630_SNP [dm6]	C	A	4.156e^-4	0.988	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173137	2R_15173137_SNP [dm3] 2R_19285632_SNP [dm6]	C	G	4.156e^-4	0.988	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173139	2R_15173139_SNP [dm3] 2R_19285634_SNP [dm6]	A	T	4.156e^-4	0.988	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173141	2R_15173141_SNP [dm3] 2R_19285636_SNP [dm6]	C	G	4.156e^-4	0.988	SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173145	2R_15173145_DEL [dm3] 2R_19285640_DEL [dm6]	TCCGTGC	G	4.156e^-4	0.988	UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173154	2R_15173154_SNP [dm3] 2R_19285649_SNP [dm6]	A	T	4.156e^-4	0.988	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173156	2R_15173156_SNP [dm3] 2R_19285651_SNP [dm6]	C	T	4.156e^-4	0.988	SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173159	2R_15173159_SNP [dm3] 2R_19285654_SNP [dm6]	T	A	4.156e^-4	0.988	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173164	2R_15173164_SNP [dm3] 2R_19285659_SNP [dm6]	C	G	4.156e^-4	0.988	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15174184	2R_15174184_SNP [dm3] 2R_19286679_SNP [dm6]	A	G	4.156e^-4	0.988	INTRON CG10474	TF binding site mE1_TFBS_cad
2R	15174186	2R_15174186_DEL [dm3] 2R_19286681_DEL [dm6]	TTC	T	4.156e^-4	0.988	INTRON CG10474	TF binding site mE1_TFBS_cad
2R	15174219	2R_15174219_DEL [dm3] 2R_19286714_DEL [dm6]	AG	A	4.156e^-4	0.988	UTR_5_PRIME CG10474	TF binding site mE1_TFBS_cad
2R	15174224	2R_15174224_SNP [dm3] 2R_19286719_SNP [dm6]	T	C	4.156e^-4	0.988	START_GAINED CG10474 UTR_5_PRIME CG10474	TF binding site mE1_TFBS_cad
2R	15174225	2R_15174225_DEL [dm3] 2R_19286720_DEL [dm6]	AATGC	A	4.156e^-4	0.988	UTR_5_PRIME CG10474	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15174238	2R_15174238_MNP [dm3] 2R_19286733_MNP [dm6]	GGA	TAT	4.156e^-4	0.988	UPSTREAM CG10474 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15174245	2R_15174245_MNP [dm3] 2R_19286740_MNP [dm6]	TGC	CTT	4.156e^-4	0.988	UPSTREAM CG10474 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15174249	2R_15174249_DEL [dm3] 2R_19286744_DEL [dm6]	AG	A	4.156e^-4	0.988	UPSTREAM CG10474 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15174252	2R_15174252_DEL [dm3] 2R_19286747_DEL [dm6]	CCCGCAA	C	4.156e^-4	0.988	UPSTREAM CG10474 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10532084	3L_10532084_DEL [dm3] 3L_10538984_DEL [dm6]	ATTGCAAAG	A	4.171e^-4	0.988	INTRON A2bp1
2L	529967	2L_529967_SNP [dm3] 2L_529967_SNP [dm6]	T	G	4.180e^-4	0.988	INTRON ush	regulatory region REDfly_CRMs
2L	10704084	2L_10704084_SNP [dm3] 2L_10704084_SNP [dm6]	A	G	4.183e^-4	0.988	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2
3L	7218080	3L_7218080_SNP [dm3] 3L_7224980_SNP [dm6]	C	A	4.198e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	11448221	2L_11448221_SNP [dm3] 2L_11448221_SNP [dm6]	A	C	4.204e^-4	0.988	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10731047	2R_10731047_SNP [dm3] 2R_14843542_SNP [dm6]	T	C	4.209e^-4	0.988	SYNONYMOUS_CODING NaPi-T
2L	529954	2L_529954_SNP [dm3] 2L_529954_SNP [dm6]	T	C	4.210e^-4	0.988	INTRON ush	regulatory region REDfly_CRMs
3R	25376561	3R_25376561_SNP [dm3] 3R_29550839_SNP [dm6]	T	C	4.215e^-4	0.988	INTERGENIC
2L	3422330	2L_3422330_SNP [dm3] 2L_3422330_SNP [dm6]	C	T	4.216e^-4	0.988	INTRON pgant2
2R	4691186	2R_4691186_SNP [dm3] 2R_8803681_SNP [dm6]	C	T	4.217e^-4	0.988	INTRON sns
2L	11485346	2L_11485346_SNP [dm3] 2L_11485346_SNP [dm6]	T	C	4.220e^-4	0.988	SYNONYMOUS_CODING CG43355 UTR_5_PRIME sala UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1288364	3L_1288364_SNP [dm3] 3L_1288364_SNP [dm6]	T	A	4.224e^-4	0.988	DOWNSTREAM CG32333 INTRON CG32333
2R	15467505	2R_15467505_SNP [dm3] 2R_19580000_SNP [dm6]	T	G	4.228e^-4	0.988	INTRON sm
X	12766380	X_12766380_SNP [dm3] X_12872347_SNP [dm6]	T	C	4.230e^-4	0.988	INTRON Pde9
3L	9423034	3L_9423034_SNP [dm3] 3L_9429934_SNP [dm6]	A	T	4.234e^-4	0.988	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8156028	3R_8156028_SNP [dm3] 3R_12330306_SNP [dm6]	G	A	4.238e^-4	0.988	DOWNSTREAM CR45583 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	1978644	2L_1978644_SNP [dm3] 2L_1978644_SNP [dm6]	A	G	4.241e^-4	0.988	SYNONYMOUS_CODING CG15356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7987356	X_7987356_SNP [dm3] X_8093323_SNP [dm6]	T	C	4.250e^-4	0.988	DOWNSTREAM CG2258 INTRON Ubc-E2H	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1604475	3L_1604475_SNP [dm3] 3L_1604475_SNP [dm6]	C	T	4.259e^-4	0.988	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3R	22433397	3R_22433397_SNP [dm3] 3R_26607675_SNP [dm6]	A	T	4.261e^-4	0.988	EXON CR44951
2R	15174262	2R_15174262_SNP [dm3] 2R_19286757_SNP [dm6]	A	G	4.262e^-4	0.988	UPSTREAM CG10474 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6234109	2L_6234109_SNP [dm3] 2L_6234109_SNP [dm6]	G	A	4.263e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23495246	3R_23495246_SNP [dm3] 3R_27669524_SNP [dm6]	T	C	4.266e^-4	0.988	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2929510	2L_2929510_SNP [dm3] 2L_2929510_SNP [dm6]	C	A	4.267e^-4	0.988	INTRON lilli
3R	8671180	3R_8671180_SNP [dm3] 3R_12845458_SNP [dm6]	G	A	4.277e^-4	0.988	INTRON beat-Va
X	10210225	X_10210225_SNP [dm3] X_10316192_SNP [dm6]	T	A	4.280e^-4	0.988	INTRON alpha-Man-I
3L	10688004	3L_10688004_SNP [dm3] 3L_10694904_SNP [dm6]	C	T	4.287e^-4	0.988	UPSTREAM CG6463 INTRON NijA
2R	17819998	2R_17819998_DEL [dm3] 2R_21932493_DEL [dm6]	TTAAAG	T	4.296e^-4	0.988	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4755646	3L_4755646_SNP [dm3] 3L_4755646_SNP [dm6]	T	C	4.307e^-4	0.988	INTRON RhoGEF64C EXON CR43881
2L	9982713	2L_9982713_SNP [dm3] 2L_9982713_SNP [dm6]	A	C	4.320e^-4	0.988	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2R	17819995	2R_17819995_DEL [dm3] 2R_21932490_DEL [dm6]	AG	A	4.321e^-4	0.988	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18187521	2R_18187521_SNP [dm3] 2R_22300016_SNP [dm6]	C	T	4.327e^-4	0.988	SYNONYMOUS_CODING wdp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19760503	X_19760503_SNP [dm3] X_19866470_SNP [dm6]	T	C	4.327e^-4	0.988	UPSTREAM CG15618 INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	15093320	2L_15093320_DEL [dm3] 2L_15093320_DEL [dm6]	TTGATTAT	T	4.333e^-4	0.988	INTRON CG15270
2R	15173134	2R_15173134_SNP [dm3] 2R_19285629_SNP [dm6]	A	G	4.334e^-4	0.988	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
3L	4354727	3L_4354727_SNP [dm3] 3L_4354727_SNP [dm6]	A	G	4.335e^-4	0.988	INTRON Cip4
2L	21088949	2L_21088949_SNP [dm3] 2L_21088949_SNP [dm6]	A	T	4.336e^-4	0.988	UPSTREAM CG9259 & 1 other INTERGENIC
3L	2424764	3L_2424764_SNP [dm3] 3L_2424764_SNP [dm6]	T	A	4.338e^-4	0.988	INTRON CG45186
2R	14964643	2R_14964643_SNP [dm3] 2R_19077138_SNP [dm6]	A	G	4.341e^-4	0.988	INTRON 5-HT1A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	21098794	2L_21098794_SNP [dm3] 2L_21098794_SNP [dm6]	C	T	4.346e^-4	0.988	UTR_3_PRIME CG34136 INTRON CG12050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20262404	2R_20262404_SNP [dm3] 2R_24374881_SNP [dm6]	G	T	4.350e^-4	0.988	DOWNSTREAM tRNA:N5:60C INTRON bs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9007581	3L_9007581_DEL [dm3] 3L_9014481_DEL [dm6]	ACA	A	4.351e^-4	0.988	INTRON Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21136146	2L_21136146_SNP [dm3] 2L_21136146_SNP [dm6]	T	A	4.361e^-4	0.988	UTR_3_PRIME Dap160 DOWNSTREAM Dap160 INTRON Dap160
X	20920568	X_20920568_SNP [dm3] X_21049541_SNP [dm6]	A	C	4.365e^-4	0.988	DOWNSTREAM CG1518 & 1 other INTERGENIC
X	19760677	X_19760677_SNP [dm3] X_19866644_SNP [dm6]	G	C	4.366e^-4	0.988	INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	21370988	2L_21370988_SNP [dm3] 2L_21370988_SNP [dm6]	G	C	4.369e^-4	0.988	UPSTREAM CG8665 INTERGENIC
2R	14966190	2R_14966190_SNP [dm3] 2R_19078685_SNP [dm6]	G	T	4.383e^-4	0.988	INTRON 5-HT1A
3R	24394539	3R_24394539_SNP [dm3] 3R_28568817_SNP [dm6]	C	T	4.385e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12664311	3R_12664311_SNP [dm3] 3R_16838589_SNP [dm6]	C	A	4.386e^-4	0.988	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26167503	3R_26167503_SNP [dm3] 3R_30341781_SNP [dm6]	G	T	4.386e^-4	0.988	INTRON hdc
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	4.398e^-4	0.988	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13505831	2R_13505831_SNP [dm3] 2R_17618326_SNP [dm6]	T	A	4.412e^-4	0.988	UPSTREAM CG44403 INTRON CG10936
3R	23840570	3R_23840570_SNP [dm3] 3R_28014848_SNP [dm6]	A	T	4.422e^-4	0.988	INTERGENIC
2L	14225106	2L_14225106_SNP [dm3] 2L_14225106_SNP [dm6]	A	G	4.436e^-4	0.988	INTRON Dyrk2	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	4368130	X_4368130_SNP [dm3] X_4474097_SNP [dm6]	C	T	4.438e^-4	0.988	INTRON bi & 1 other
2L	11484390	2L_11484390_SNP [dm3] 2L_11484390_SNP [dm6]	T	A	4.439e^-4	0.988	UPSTREAM CG43355 & 1 other INTERGENIC
2R	6759338	2R_6759338_SNP [dm3] 2R_10871833_SNP [dm6]	A	T	4.448e^-4	0.988	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	21940387	2L_21940387_SNP [dm3] 2L_21940387_SNP [dm6]	A	G	4.464e^-4	0.988	INTERGENIC	transposable element FlyBase
3R	9218158	3R_9218158_SNP [dm3] 3R_13392436_SNP [dm6]	T	C	4.465e^-4	0.988	INTRON CCHa2
2R	19241332	2R_19241332_SNP [dm3] 2R_23353809_SNP [dm6]	C	T	4.470e^-4	0.988	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14966176	2R_14966176_SNP [dm3] 2R_19078671_SNP [dm6]	C	A	4.471e^-4	0.988	INTRON 5-HT1A
3R	12665090	3R_12665090_SNP [dm3] 3R_16839368_SNP [dm6]	G	T	4.482e^-4	0.988	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	14389035	3R_14389035_SNP [dm3] 3R_18563313_SNP [dm6]	T	C	4.487e^-4	0.988	DOWNSTREAM CG43210 & 1 other INTERGENIC
X	9192592	X_9192592_SNP [dm3] X_9298559_SNP [dm6]	A	T	4.496e^-4	0.988	INTRON lz
2R	9583248	2R_9583248_SNP [dm3] 2R_13695743_SNP [dm6]	T	C	4.501e^-4	0.988	INTRON fas
2R	9041156	2R_9041156_SNP [dm3] 2R_13153651_SNP [dm6]	G	A	4.509e^-4	0.988	SYNONYMOUS_CODING TppII UPSTREAM Ack-like	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16550132	2L_16550132_SNP [dm3] 2L_16550132_SNP [dm6]	G	C	4.515e^-4	0.988	UPSTREAM CG5968 INTRON CG42389
3R	23161952	3R_23161952_SNP [dm3] 3R_27336230_SNP [dm6]	C	T	4.522e^-4	0.988	INTERGENIC
2R	19237190	2R_19237190_SNP [dm3] 2R_23349667_SNP [dm6]	A	G	4.525e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	6139786	X_6139786_SNP [dm3] X_6245753_SNP [dm6]	G	T	4.526e^-4	0.988	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7981510	X_7981510_INS [dm3] X_8087477_INS [dm6]	T	TT	4.530e^-4	0.988	UPSTREAM CG2256 DOWNSTREAM Ubc-E2H INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8985123	2L_8985123_SNP [dm3] 2L_8985123_SNP [dm6]	C	A	4.532e^-4	0.988	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2936188	2L_2936188_SNP [dm3] 2L_2936188_SNP [dm6]	C	T	4.539e^-4	0.988	INTRON lilli
X	18451608	X_18451608_SNP [dm3] X_18557575_SNP [dm6]	G	T	4.557e^-4	0.988	INTRON Bx
2L	9982702	2L_9982702_SNP [dm3] 2L_9982702_SNP [dm6]	C	A	4.568e^-4	0.988	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	11442875	2L_11442875_DEL [dm3] 2L_11442875_DEL [dm6]	CAC	T	4.578e^-4	0.988	INTRON salm
2L	10767469	2L_10767469_SNP [dm3] 2L_10767469_SNP [dm6]	G	A	4.580e^-4	0.988	UPSTREAM UbcD2 DOWNSTREAM CG6724 INTRON UbcD2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	26441085	3R_26441085_SNP [dm3] 3R_30615363_SNP [dm6]	T	G	4.587e^-4	0.988	EXON CR45571
2R	9583032	2R_9583032_SNP [dm3] 2R_13695527_SNP [dm6]	C	A	4.591e^-4	0.988	INTRON fas
3R	14226605	3R_14226605_SNP [dm3] 3R_18400883_SNP [dm6]	A	T	4.599e^-4	0.988	NON_SYNONYMOUS_CODING CG12333 DOWNSTREAM CG44009	TF binding site mE1_TFBS_chinmo
3R	23184597	3R_23184597_SNP [dm3] 3R_27358875_SNP [dm6]	C	T	4.600e^-4	0.988	UPSTREAM CG42534 INTRON CG42534
2L	16112549	2L_16112549_SNP [dm3] 2L_16112549_SNP [dm6]	T	A	4.601e^-4	0.988	INTERGENIC
2R	17305040	2R_17305040_SNP [dm3] 2R_21417535_SNP [dm6]	C	T	4.631e^-4	0.988	UPSTREAM Sdc INTRON Sdc
2L	3222422	2L_3222422_SNP [dm3] 2L_3222422_SNP [dm6]	G	T	4.632e^-4	0.988	INTERGENIC
X	10210507	X_10210507_SNP [dm3] X_10316474_SNP [dm6]	T	G	4.639e^-4	0.988	INTRON alpha-Man-I
3L	4390443	3L_4390443_SNP [dm3] 3L_4390443_SNP [dm6]	C	T	4.640e^-4	0.988	SPLICE_SITE_REGION slow INTRON slow	TF binding site mE1_TFBS_cad
2L	16112548	2L_16112548_SNP [dm3] 2L_16112548_SNP [dm6]	G	A	4.654e^-4	0.988	INTERGENIC
3L	4907553	3L_4907553_SNP [dm3] 3L_4907553_SNP [dm6]	T	G	4.659e^-4	0.988	INTERGENIC
2R	6336475	2R_6336475_SNP [dm3] 2R_10448970_SNP [dm6]	C	A	4.662e^-4	0.988	DOWNSTREAM Cyp49a1 INTRON Galphao
3L	467246	3L_467246_MNP [dm3] 3L_467246_MNP [dm6]	AAG	TTC	4.663e^-4	0.988	INTRON klar
3L	467251	3L_467251_MNP [dm3] 3L_467251_MNP [dm6]	ACT	GTC	4.663e^-4	0.988	INTRON klar
X	7139286	X_7139286_INS [dm3] X_7245253_INS [dm6]	A	AC	4.664e^-4	0.988	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
3R	17315736	3R_17315736_SNP [dm3] 3R_21490014_SNP [dm6]	G	A	4.671e^-4	0.988	INTERGENIC
3L	18594742	3L_18594742_SNP [dm3] 3L_18601642_SNP [dm6]	A	T	4.677e^-4	0.988	NON_SYNONYMOUS_CODING CG4174 UTR_3_PRIME CG13380
2L	495050	2L_495050_SNP [dm3] 2L_495050_SNP [dm6]	G	A	4.680e^-4	0.988	INTRON ush
2L	5716144	2L_5716144_SNP [dm3] 2L_5716144_SNP [dm6]	G	A	4.692e^-4	0.988	SYNONYMOUS_CODING CG14007 UPSTREAM CG34011 EXON CR44818
3L	11798992	3L_11798992_SNP [dm3] 3L_11805892_SNP [dm6]	G	A	4.699e^-4	0.988	SYNONYMOUS_CODING CG42255
2L	3283270	2L_3283270_SNP [dm3] 2L_3283270_SNP [dm6]	T	A	4.704e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_inv
3L	13207655	3L_13207655_SNP [dm3] 3L_13214555_SNP [dm6]	A	G	4.711e^-4	0.988	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25376314	3R_25376314_SNP [dm3] 3R_29550592_SNP [dm6]	C	G	4.716e^-4	0.988	INTERGENIC
3L	2966415	3L_2966415_SNP [dm3] 3L_2966415_SNP [dm6]	C	T	4.717e^-4	0.988	INTERGENIC
2R	19244649	2R_19244649_SNP [dm3] 2R_23357126_SNP [dm6]	G	T	4.721e^-4	0.988	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10798281	2L_10798281_DEL [dm3] 2L_10798281_DEL [dm6]	AC	A	4.728e^-4	0.988	INTRON CG31869
3L	455770	3L_455770_SNP [dm3] 3L_455770_SNP [dm6]	G	A	4.747e^-4	0.988	INTRON klar
3R	23025244	3R_23025244_DEL [dm3] 3R_27199522_DEL [dm6]	TAGAGTAACTTTCCTTAAAT...	T	4.754e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
2L	14265739	2L_14265739_SNP [dm3] 2L_14265739_SNP [dm6]	G	A	4.755e^-4	0.988	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	27274360	3R_27274360_SNP [dm3] 3R_31448638_SNP [dm6]	G	A	4.758e^-4	0.988	INTRON Gprk2
3R	24651973	3R_24651973_SNP [dm3] 3R_28826251_SNP [dm6]	A	G	4.763e^-4	0.988	SYNONYMOUS_CODING WASp	TF binding site mE1_TFBS_chinmo
3R	5422635	3R_5422635_SNP [dm3] 3R_9596913_SNP [dm6]	A	T	4.775e^-4	0.988	INTRON CG8312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13019301	3R_13019301_SNP [dm3] 3R_17193579_SNP [dm6]	G	C	4.777e^-4	0.988	INTRON Mur89F
2L	3743766	2L_3743766_SNP [dm3] 2L_3743766_SNP [dm6]	A	C	4.797e^-4	0.988	INTRON CG10019
2L	11917786	2L_11917786_SNP [dm3] 2L_11917786_SNP [dm6]	G	C	4.802e^-4	0.988	INTRON Pde1c
X	13606715	X_13606715_SNP [dm3] X_13712682_SNP [dm6]	C	T	4.813e^-4	0.988	SYNONYMOUS_CODING NnaD INTRON CG9940
X	7139293	X_7139293_SNP [dm3] X_7245260_SNP [dm6]	C	T	4.815e^-4	0.988	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
2L	21167861	2L_21167861_SNP [dm3] 2L_21167861_SNP [dm6]	A	C	4.816e^-4	0.988	NON_SYNONYMOUS_CODING CG43345 UTR_5_PRIME CG43346 UPSTREAM Acon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11426405	2L_11426405_SNP [dm3] 2L_11426405_SNP [dm6]	A	G	4.819e^-4	0.988	INTERGENIC
X	11073560	X_11073560_SNP [dm3] X_11179527_SNP [dm6]	C	T	4.820e^-4	0.988	INTERGENIC
3R	18246639	3R_18246639_SNP [dm3] 3R_22420917_SNP [dm6]	A	T	4.822e^-4	0.988	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15463712	2L_15463712_SNP [dm3] 2L_15463712_SNP [dm6]	A	C	4.838e^-4	0.988	DOWNSTREAM CR44863 INTERGENIC
2R	17820101	2R_17820101_SNP [dm3] 2R_21932596_SNP [dm6]	T	G	4.841e^-4	0.988	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26164345	3R_26164345_SNP [dm3] 3R_30338623_SNP [dm6]	A	G	4.843e^-4	0.988	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18559923	3L_18559923_SNP [dm3] 3L_18566823_SNP [dm6]	A	T	4.857e^-4	0.988	INTRON AstC-R1
3R	21063788	3R_21063788_SNP [dm3] 3R_25238066_SNP [dm6]	C	T	4.857e^-4	0.988	SYNONYMOUS_CODING CG11852
3R	15441075	3R_15441075_SNP [dm3] 3R_19615353_SNP [dm6]	T	A	4.858e^-4	0.988	DOWNSTREAM CG6231 INTRON CG16727
2L	21886389	2L_21886389_SNP [dm3] 2L_21886389_SNP [dm6]	G	A	4.858e^-4	0.988	INTERGENIC
2L	3973395	2L_3973395_SNP [dm3] 2L_3973395_SNP [dm6]	G	A	4.860e^-4	0.988	INTRON fred
2L	7018954	2L_7018954_SNP [dm3] 2L_7018954_SNP [dm6]	A	T	4.863e^-4	0.988	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
3L	15732669	3L_15732669_SNP [dm3] 3L_15739569_SNP [dm6]	C	A	4.865e^-4	0.988	INTERGENIC
3L	1272417	3L_1272417_SNP [dm3] 3L_1272417_SNP [dm6]	G	A	4.868e^-4	0.988	INTRON CG9134	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12248921	3R_12248921_SNP [dm3] 3R_16423199_SNP [dm6]	T	A	4.873e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	21221242	3R_21221242_SNP [dm3] 3R_25395520_SNP [dm6]	C	A	4.875e^-4	0.988	INTRON Fur1
2R	7406943	2R_7406943_SNP [dm3] 2R_11519438_SNP [dm6]	T	C	4.876e^-4	0.988	INTERGENIC
3L	12195874	3L_12195874_DEL [dm3] 3L_12202774_DEL [dm6]	AGCTA	A	4.886e^-4	0.988	INTRON Adk1
3R	24488401	3R_24488401_INS [dm3] 3R_28662679_INS [dm6]	T	TT	4.895e^-4	0.988	INTERGENIC
3L	13078882	3L_13078882_SNP [dm3] 3L_13085782_SNP [dm6]	C	T	4.912e^-4	0.988	DOWNSTREAM CG17300 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	16404734	3R_16404734_SNP [dm3] 3R_20579012_SNP [dm6]	G	A	4.923e^-4	0.988	SYNONYMOUS_CODING EloB DOWNSTREAM CG5412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	25624260	3R_25624260_SNP [dm3] 3R_29798538_SNP [dm6]	T	G	4.924e^-4	0.988	SYNONYMOUS_CODING CG7837	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	467422	3L_467422_SNP [dm3] 3L_467422_SNP [dm6]	T	A	4.939e^-4	0.988	INTRON klar
3L	23002592	3L_23002592_SNP [dm3] 3L_23009492_SNP [dm6]	G	A	4.950e^-4	0.988	INTRON nrm
3L	13207665	3L_13207665_SNP [dm3] 3L_13214565_SNP [dm6]	G	A	4.967e^-4	0.988	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15092398	3R_15092398_SNP [dm3] 3R_19266676_SNP [dm6]	G	A	4.969e^-4	0.988	INTERGENIC
2R	4660364	2R_4660364_SNP [dm3] 2R_8772859_SNP [dm6]	G	C	4.983e^-4	0.988	INTERGENIC
3L	5874879	3L_5874879_SNP [dm3] 3L_5881779_SNP [dm6]	C	T	4.988e^-4	0.988	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	19695682	3L_19695682_SNP [dm3] 3L_19702582_SNP [dm6]	A	T	4.988e^-4	0.988	INTRON serp	TF binding site mE1_TFBS_cad
3L	8868839	3L_8868839_SNP [dm3] 3L_8875739_SNP [dm6]	G	T	4.989e^-4	0.988	INTRON dally
3R	23161744	3R_23161744_SNP [dm3] 3R_27336022_SNP [dm6]	A	G	4.989e^-4	0.988	INTERGENIC
3L	12049992	3L_12049992_DEL [dm3] 3L_12056892_DEL [dm6]	ATCAG	T	4.991e^-4	0.988	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15213127	3R_15213127_SNP [dm3] 3R_19387405_SNP [dm6]	T	C	4.995e^-4	0.988	UPSTREAM CG3734 INTRON Ino80 & 1 other
3R	22989993	3R_22989993_SNP [dm3] 3R_27164271_SNP [dm6]	G	T	5.000e^-4	0.988	SYNONYMOUS_CODING ppk31 DOWNSTREAM CG34293
3R	19066093	3R_19066093_SNP [dm3] 3R_23240371_SNP [dm6]	T	G	5.006e^-4	0.988	UPSTREAM CG4467 INTRON CG4467
2R	5643555	2R_5643555_SNP [dm3] 2R_9756050_SNP [dm6]	G	A	5.008e^-4	0.988	NON_SYNONYMOUS_CODING trpl DOWNSTREAM CG1690
3L	17098153	3L_17098153_SNP [dm3] 3L_17105053_SNP [dm6]	A	C	5.024e^-4	0.988	INTRON Rbp6
2L	12147260	2L_12147260_SNP [dm3] 2L_12147260_SNP [dm6]	T	C	5.024e^-4	0.988	INTRON CG31760
3L	10099542	3L_10099542_SNP [dm3] 3L_10106442_SNP [dm6]	C	T	5.032e^-4	0.988	INTRON dpr6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16794043	X_16794043_SNP [dm3] X_16900010_SNP [dm6]	T	C	5.052e^-4	0.988	INTERGENIC
3R	23184659	3R_23184659_SNP [dm3] 3R_27358937_SNP [dm6]	C	T	5.057e^-4	0.988	UPSTREAM CG42534 INTRON CG42534
3R	10205805	3R_10205805_SNP [dm3] 3R_14380083_SNP [dm6]	A	C	5.057e^-4	0.988	DOWNSTREAM soti INTERGENIC
2R	12008343	2R_12008343_SNP [dm3] 2R_16120838_SNP [dm6]	C	T	5.115e^-4	0.988	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd
2R	6225405	2R_6225405_SNP [dm3] 2R_10337900_SNP [dm6]	G	A	5.120e^-4	0.988	INTRON CG42732
3L	18248665	3L_18248665_SNP [dm3] 3L_18255565_SNP [dm6]	C	T	5.128e^-4	0.988	INTERGENIC
3L	9795874	3L_9795874_INS [dm3] 3L_9802774_INS [dm6]	C	CC	5.134e^-4	0.988	UPSTREAM Ilp3 DOWNSTREAM Ilp4 INTRON CG32052	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7406959	2R_7406959_SNP [dm3] 2R_11519454_SNP [dm6]	G	A	5.140e^-4	0.988	INTERGENIC
2L	6588745	2L_6588745_SNP [dm3] 2L_6588745_SNP [dm6]	G	A	5.145e^-4	0.988	INTRON CG11319
3L	466832	3L_466832_SNP [dm3] 3L_466832_SNP [dm6]	T	C	5.148e^-4	0.988	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3085567	2L_3085567_SNP [dm3] 2L_3085567_SNP [dm6]	G	T	5.154e^-4	0.988	INTRON toc
3R	11489386	3R_11489386_DEL [dm3] 3R_15663664_DEL [dm6]	TTCTA	CC	5.157e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	8555050	2R_8555050_INS [dm3] 2R_12667545_INS [dm6]	G	GTTTAAAAGTAAATAGAGTA...	5.158e^-4	0.988	INTRON nemy
2R	8555052	2R_8555052_INS [dm3] 2R_12667547_INS [dm6]	A	AATAAAGTT	5.158e^-4	0.988	INTRON nemy
3R	21257908	3R_21257908_SNP [dm3] 3R_25432186_SNP [dm6]	T	G	5.173e^-4	0.988	INTRON Fur1
3R	23324473	3R_23324473_DEL [dm3] 3R_27498751_DEL [dm6]	TATCA	T	5.175e^-4	0.988	INTERGENIC
3R	13941407	3R_13941407_SNP [dm3] 3R_18115685_SNP [dm6]	G	A	5.178e^-4	0.988	INTRON sr
2L	10279573	2L_10279573_SNP [dm3] 2L_10279573_SNP [dm6]	G	A	5.183e^-4	0.988	SPLICE_SITE_REGION CG34043 UPSTREAM Utx INTRON CG34043
3L	15724034	3L_15724034_SNP [dm3] 3L_15730934_SNP [dm6]	G	A	5.205e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23435863	3R_23435863_SNP [dm3] 3R_27610141_SNP [dm6]	T	G	5.206e^-4	0.988	INTRON Tusp
X	19760056	X_19760056_SNP [dm3] X_19866023_SNP [dm6]	C	A	5.212e^-4	0.988	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18246798	3R_18246798_SNP [dm3] 3R_22421076_SNP [dm6]	A	G	5.220e^-4	0.988	UPSTREAM mats & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20283190	3R_20283190_SNP [dm3] 3R_24457468_SNP [dm6]	G	T	5.224e^-4	0.988	UPSTREAM nAChRalpha1 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	16447705	3L_16447705_SNP [dm3] 3L_16454605_SNP [dm6]	C	T	5.225e^-4	0.988	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24525423	3R_24525423_SNP [dm3] 3R_28699701_SNP [dm6]	T	A	5.231e^-4	0.988	INTRON htt
3L	13408835	3L_13408835_SNP [dm3] 3L_13415735_SNP [dm6]	T	A	5.232e^-4	0.988	DOWNSTREAM CG32121 INTRON flr	TF binding site mE1_TFBS_cad
3L	822098	3L_822098_SNP [dm3] 3L_822098_SNP [dm6]	T	A	5.240e^-4	0.988	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3229931	2L_3229931_INS [dm3] 2L_3229931_INS [dm6]	A	AAAG	5.251e^-4	0.988	INTERGENIC
2L	19437195	2L_19437195_SNP [dm3] 2L_19437195_SNP [dm6]	C	A	5.254e^-4	0.988	INTRON CG10237
3R	3797216	3R_3797216_SNP [dm3] 3R_7971494_SNP [dm6]	C	T	5.256e^-4	0.988	INTERGENIC
2L	21764226	2L_21764226_SNP [dm3] 2L_21764226_SNP [dm6]	T	C	5.257e^-4	0.988	INTRON CG31612
2L	10088402	2L_10088402_SNP [dm3] 2L_10088402_SNP [dm6]	G	A	5.278e^-4	0.988	INTRON CG44153	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16447907	3L_16447907_SNP [dm3] 3L_16454807_SNP [dm6]	G	A	5.281e^-4	0.988	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	10292532	3L_10292532_DEL [dm3] 3L_10299432_DEL [dm6]	GCTGCGCTTG	G	5.282e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2R	6762582	2R_6762582_SNP [dm3] 2R_10875077_SNP [dm6]	A	G	5.283e^-4	0.988	SYNONYMOUS_CODING CG30016 UPSTREAM nclb & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15516005	3L_15516005_SNP [dm3] 3L_15522905_SNP [dm6]	A	G	5.287e^-4	0.988	INTRON CG7945
3L	12633969	3L_12633969_SNP [dm3] 3L_12640869_SNP [dm6]	A	T	5.288e^-4	0.988	INTRON CR32111
3R	22759518	3R_22759518_SNP [dm3] 3R_26933796_SNP [dm6]	T	G	5.293e^-4	0.988	INTRON sda
3R	18655451	3R_18655451_SNP [dm3] 3R_22829729_SNP [dm6]	A	C	5.295e^-4	0.988	INTERGENIC
3L	2940141	3L_2940141_INS [dm3] 3L_2940141_INS [dm6]	T	TCAAAATAAT	5.295e^-4	0.988	INTRON Shab
2R	18282776	2R_18282776_SNP [dm3] 2R_22395271_SNP [dm6]	C	G	5.300e^-4	0.988	INTRON babos
2L	2557027	2L_2557027_SNP [dm3] 2L_2557027_SNP [dm6]	A	T	5.302e^-4	0.988	DOWNSTREAM CR44113 INTERGENIC
3R	23161801	3R_23161801_SNP [dm3] 3R_27336079_SNP [dm6]	G	A	5.303e^-4	0.988	INTERGENIC
2L	2433008	2L_2433008_SNP [dm3] 2L_2433008_SNP [dm6]	G	A	5.312e^-4	0.988	INTRON dpp
2L	5180036	2L_5180036_SNP [dm3] 2L_5180036_SNP [dm6]	G	A	5.312e^-4	0.988	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	13087677	3L_13087677_SNP [dm3] 3L_13094577_SNP [dm6]	C	G	5.318e^-4	0.988	INTERGENIC
X	20008258	X_20008258_INS [dm3] X_20114225_INS [dm6]	A	ATAACTGA	5.321e^-4	0.988	INTERGENIC
3L	19965256	3L_19965256_SNP [dm3] 3L_19972156_SNP [dm6]	T	A	5.326e^-4	0.988	INTRON Ac76E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9982693	2L_9982693_SNP [dm3] 2L_9982693_SNP [dm6]	C	A	5.335e^-4	0.988	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3R	21583687	3R_21583687_SNP [dm3] 3R_25757965_SNP [dm6]	G	A	5.339e^-4	0.988	INTRON LpR1
3L	13402789	3L_13402789_DEL [dm3] 3L_13409689_DEL [dm6]	TTT	T	5.339e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14224672	2L_14224672_SNP [dm3] 2L_14224672_SNP [dm6]	T	C	5.353e^-4	0.988	INTRON Dyrk2
3L	2899678	3L_2899678_SNP [dm3] 3L_2899678_SNP [dm6]	C	A	5.367e^-4	0.988	INTRON Shab
3L	16749585	3L_16749585_INS [dm3] 3L_16756485_INS [dm6]	A	ATGAAACCAA	5.386e^-4	0.988	DOWNSTREAM CG42852 INTERGENIC
2R	5706160	2R_5706160_SNP [dm3] 2R_9818655_SNP [dm6]	T	C	5.391e^-4	0.988	DOWNSTREAM lectin-46Ca INTRON CG1648
2R	10555645	2R_10555645_SNP [dm3] 2R_14668140_SNP [dm6]	C	T	5.396e^-4	0.988	UPSTREAM CG12866 INTERGENIC
2L	16400307	2L_16400307_SNP [dm3] 2L_16400307_SNP [dm6]	T	A	5.406e^-4	0.988	UTR_3_PRIME CG5888
3R	21257194	3R_21257194_SNP [dm3] 3R_25431472_SNP [dm6]	T	G	5.407e^-4	0.988	INTRON Fur1
2L	18386073	2L_18386073_SNP [dm3] 2L_18386073_SNP [dm6]	T	C	5.411e^-4	0.988	INTRON Fas3
3L	18270799	3L_18270799_SNP [dm3] 3L_18277699_SNP [dm6]	A	G	5.416e^-4	0.988	INTERGENIC
2L	5838618	2L_5838618_SNP [dm3] 2L_5838618_SNP [dm6]	A	G	5.417e^-4	0.988	INTRON TrissinR
2L	11429907	2L_11429907_SNP [dm3] 2L_11429907_SNP [dm6]	A	G	5.418e^-4	0.988	INTERGENIC
3R	16357799	3R_16357799_SNP [dm3] 3R_20532077_SNP [dm6]	G	T	5.421e^-4	0.988	INTERGENIC
2R	12501293	2R_12501293_SNP [dm3] 2R_16613788_SNP [dm6]	C	A	5.430e^-4	0.988	INTRON CG5065
3R	17315674	3R_17315674_SNP [dm3] 3R_21489952_SNP [dm6]	T	C	5.432e^-4	0.988	INTERGENIC
2R	10368233	2R_10368233_SNP [dm3] 2R_14480728_SNP [dm6]	A	C	5.438e^-4	0.988	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3R	8156160	3R_8156160_SNP [dm3] 3R_12330438_SNP [dm6]	T	C	5.440e^-4	0.988	DOWNSTREAM CR45583 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	4907621	3L_4907621_SNP [dm3] 3L_4907621_SNP [dm6]	G	C	5.455e^-4	0.988	INTERGENIC
2L	12014148	2L_12014148_DEL [dm3] 2L_12014148_DEL [dm6]	CG	C	5.459e^-4	0.988	DOWNSTREAM CG6734 & 1 other INTERGENIC
3L	16494059	3L_16494059_SNP [dm3] 3L_16500959_SNP [dm6]	G	A	5.463e^-4	0.988	DOWNSTREAM st INTRON CG43373
2L	18580633	2L_18580633_SNP [dm3] 2L_18580633_SNP [dm6]	G	T	5.466e^-4	0.988	INTRON Pde11
3R	15441099	3R_15441099_SNP [dm3] 3R_19615377_SNP [dm6]	G	T	5.466e^-4	0.988	DOWNSTREAM CG6231 INTRON CG16727
3L	13880697	3L_13880697_SNP [dm3] 3L_13887597_SNP [dm6]	G	C	5.492e^-4	0.988	INTRON dysc
3L	18248659	3L_18248659_SNP [dm3] 3L_18255559_SNP [dm6]	G	C	5.495e^-4	0.988	INTERGENIC
3R	17200604	3R_17200604_SNP [dm3] 3R_21374882_SNP [dm6]	A	C	5.505e^-4	0.988	INTRON mod_mdg4_	TF binding site mE1_TFBS_sens
3L	9033292	3L_9033292_SNP [dm3] 3L_9040192_SNP [dm6]	G	T	5.510e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
X	10383636	X_10383636_SNP [dm3] X_10489603_SNP [dm6]	C	A	5.519e^-4	0.988	DOWNSTREAM spri INTERGENIC
3R	12184695	3R_12184695_SNP [dm3] 3R_16358973_SNP [dm6]	T	G	5.523e^-4	0.988	INTRON CG17931 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14708932	3L_14708932_SNP [dm3] 3L_14715832_SNP [dm6]	A	G	5.524e^-4	0.988	INTRON ome
2R	8632501	2R_8632501_SNP [dm3] 2R_12744996_SNP [dm6]	T	G	5.536e^-4	0.988	INTRON CG42663	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18737192	X_18737192_SNP [dm3] X_18843159_SNP [dm6]	T	G	5.540e^-4	0.988	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	21734328	2L_21734328_SNP [dm3] 2L_21734328_SNP [dm6]	T	C	5.547e^-4	0.988	INTERGENIC	transposable element FlyBase
3L	18837298	3L_18837298_INS [dm3] 3L_18844198_INS [dm6]	A	GT	5.548e^-4	0.988	INTRON Indy
2R	5555823	2R_5555823_SNP [dm3] 2R_9668318_SNP [dm6]	G	A	5.552e^-4	0.988	INTRON Mmp2
3R	25518887	3R_25518887_SNP [dm3] 3R_29693165_SNP [dm6]	G	A	5.556e^-4	0.988	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12746879	3L_12746879_SNP [dm3] 3L_12753779_SNP [dm6]	C	G	5.560e^-4	0.988	SYNONYMOUS_CODING CG10973 DOWNSTREAM CG10984
3L	1606983	3L_1606983_SNP [dm3] 3L_1606983_SNP [dm6]	C	T	5.561e^-4	0.988	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17076810	2R_17076810_SNP [dm3] 2R_21189305_SNP [dm6]	C	T	5.570e^-4	0.988	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
3R	22991010	3R_22991010_SNP [dm3] 3R_27165288_SNP [dm6]	T	C	5.575e^-4	0.988	SYNONYMOUS_CODING CG34293 UPSTREAM spn-D DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22991016	3R_22991016_SNP [dm3] 3R_27165294_SNP [dm6]	T	C	5.575e^-4	0.988	SYNONYMOUS_CODING CG34293 UPSTREAM spn-D DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9367763	2R_9367763_SNP [dm3] 2R_13480258_SNP [dm6]	T	A	5.577e^-4	0.988	INTRON arr
3R	9383446	3R_9383446_SNP [dm3] 3R_13557724_SNP [dm6]	T	A	5.584e^-4	0.988	INTERGENIC
2R	15411890	2R_15411890_SNP [dm3] 2R_19524385_SNP [dm6]	G	A	5.588e^-4	0.988	UTR_3_PRIME sm
3R	17577684	3R_17577684_SNP [dm3] 3R_21751962_SNP [dm6]	C	G	5.595e^-4	0.988	SYNONYMOUS_CODING CG31233	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7313000	2R_7313000_SNP [dm3] 2R_11425495_SNP [dm6]	A	G	5.599e^-4	0.988	UPSTREAM Drip INTRON Drip	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9746501	3R_9746501_DEL [dm3] 3R_13920779_DEL [dm6]	TCCTTTGACATAT...	T	5.610e^-4	0.988	INTERGENIC
2R	6892116	2R_6892116_DEL [dm3] 2R_11004611_DEL [dm6]	TTGTTGT	T	5.615e^-4	0.988	INTRON luna	TF binding site mE1_TFBS_inv
2R	17304951	2R_17304951_SNP [dm3] 2R_21417446_SNP [dm6]	T	A	5.617e^-4	0.988	UPSTREAM Sdc INTRON Sdc
X	10505464	X_10505464_SNP [dm3] X_10611431_SNP [dm6]	A	T	5.632e^-4	0.988	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23805917	3R_23805917_SNP [dm3] 3R_27980195_SNP [dm6]	G	T	5.632e^-4	0.988	INTRON betaTub97EF
2L	21711733	2L_21711733_INS [dm3] 2L_21711733_INS [dm6]	T	TTG	5.637e^-4	0.988	INTRON CG31619	transposable element FlyBase
3L	12743868	3L_12743868_SNP [dm3] 3L_12750768_SNP [dm6]	T	C	5.640e^-4	0.988	UPSTREAM Klc INTRON CG10984	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk

Missing results

By genomic position
Variant impact
Gene name

Cuticul_5_C27_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results