DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.273e^-17)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.06069

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	9.5177	0.0086

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2091 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	11017014	3L_11017014_SNP [dm3] 3L_11023914_SNP [dm6]	C	A	1.182e^-8	0.022	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11016619	3L_11016619_SNP [dm3] 3L_11023519_SNP [dm6]	T	A	4.375e^-8	0.041	UPSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11020960	3L_11020960_SNP [dm3] 3L_11027860_SNP [dm6]	G	A	1.421e^-7	0.069	NON_SYNONYMOUS_CODING CG32081 DOWNSTREAM CG32079
2R	6368920	2R_6368920_SNP [dm3] 2R_10481415_SNP [dm6]	G	A	1.465e^-7	0.069	SYNONYMOUS_CODING CG17765 DOWNSTREAM lola & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	6365974	2R_6365974_SNP [dm3] 2R_10478469_SNP [dm6]	G	A	2.590e^-7	0.097	UTR_5_PRIME whd DOWNSTREAM trsn EXON CR45134	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	16945021	2R_16945021_SNP [dm3] 2R_21057516_SNP [dm6]	A	C	8.485e^-7	0.265	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12844513	3R_12844513_SNP [dm3] 3R_17018791_SNP [dm6]	T	C	1.112e^-6	0.268	UTR_3_PRIME AdSL INTRON Pxd
3L	11020854	3L_11020854_SNP [dm3] 3L_11027754_SNP [dm6]	C	G	1.144e^-6	0.268	DOWNSTREAM CG32079 INTRON CG32081
3L	11020850	3L_11020850_SNP [dm3] 3L_11027750_SNP [dm6]	A	G	1.540e^-6	0.321	DOWNSTREAM CG32079 INTRON CG32081
3L	11018550	3L_11018550_INS [dm3] 3L_11025450_INS [dm6]	G	GCT	3.501e^-6	0.505	UPSTREAM CG32079 DOWNSTREAM Fad2 INTERGENIC
3R	12851060	3R_12851060_SNP [dm3] 3R_17025338_SNP [dm6]	A	G	3.846e^-6	0.505	INTRON Pxd
2R	5778612	2R_5778612_SNP [dm3] 2R_9891107_SNP [dm6]	G	A	4.553e^-6	0.505	UTR_3_PRIME CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
X	8530718	X_8530718_SNP [dm3] X_8636685_SNP [dm6]	C	A	5.360e^-6	0.505	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	12851027	3R_12851027_SNP [dm3] 3R_17025305_SNP [dm6]	C	T	5.555e^-6	0.505	INTRON Pxd
2R	6363456	2R_6363456_INS [dm3] 2R_10475951_INS [dm6]	A	ATCA	5.863e^-6	0.505	UPSTREAM whd INTRON whd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12836822	3R_12836822_SNP [dm3] 3R_17011100_SNP [dm6]	T	G	5.961e^-6	0.505	INTRON CG8907
3L	5339856	3L_5339856_SNP [dm3] 3L_5346756_SNP [dm6]	T	G	7.186e^-6	0.505	INTRON lama
2L	10097723	2L_10097723_SNP [dm3] 2L_10097723_SNP [dm6]	C	T	7.460e^-6	0.505	INTRON CG34109 & 1 other
3R	12834866	3R_12834866_SNP [dm3] 3R_17009144_SNP [dm6]	T	A	7.872e^-6	0.505	INTRON CG8907
2R	5777267	2R_5777267_SNP [dm3] 2R_9889762_SNP [dm6]	G	A	8.117e^-6	0.505	UPSTREAM CG30008 DOWNSTREAM CG12923 INTRON CG1513
3R	12831703	3R_12831703_SNP [dm3] 3R_17005981_SNP [dm6]	T	A	8.315e^-6	0.505	SYNONYMOUS_CODING Irc
2L	14776797	2L_14776797_SNP [dm3] 2L_14776797_SNP [dm6]	T	G	8.318e^-6	0.505	INTERGENIC
3L	12544228	3L_12544228_SNP [dm3] 3L_12551128_SNP [dm6]	G	C	8.340e^-6	0.505	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	12845451	3R_12845451_SNP [dm3] 3R_17019729_SNP [dm6]	C	G	8.604e^-6	0.505	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12831804	3R_12831804_SNP [dm3] 3R_17006082_SNP [dm6]	A	T	8.750e^-6	0.505	INTRON Irc
X	17569203	X_17569203_SNP [dm3] X_17675170_SNP [dm6]	A	G	9.042e^-6	0.505	INTRON chas
3R	10506375	3R_10506375_SNP [dm3] 3R_14680653_SNP [dm6]	C	G	9.088e^-6	0.505	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12109402	2L_12109402_SNP [dm3] 2L_12109402_SNP [dm6]	T	C	9.255e^-6	0.505	UPSTREAM Phae1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	5781414	2R_5781414_SNP [dm3] 2R_9893909_SNP [dm6]	T	A	9.341e^-6	0.505	INTRON CG30007
2R	5760716	2R_5760716_SNP [dm3] 2R_9873211_SNP [dm6]	C	T	9.574e^-6	0.505	INTRON cbx & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_sens
2L	10097682	2L_10097682_SNP [dm3] 2L_10097682_SNP [dm6]	G	A	9.881e^-6	0.505	INTRON CG34109 & 1 other
2R	8896541	2R_8896541_SNP [dm3] 2R_13009036_SNP [dm6]	G	A	9.971e^-6	0.505	INTERGENIC	TF binding site mE1_TFBS_cad
3R	12838936	3R_12838936_SNP [dm3] 3R_17013214_SNP [dm6]	A	T	1.089e^-5	0.505	DOWNSTREAM CG8907 INTERGENIC
3R	12839083	3R_12839083_SNP [dm3] 3R_17013361_SNP [dm6]	A	C	1.089e^-5	0.505	DOWNSTREAM CG8907 INTERGENIC
3R	12831761	3R_12831761_SNP [dm3] 3R_17006039_SNP [dm6]	T	C	1.097e^-5	0.505	INTRON Irc
2R	9198674	2R_9198674_SNP [dm3] 2R_13311169_SNP [dm6]	T	A	1.128e^-5	0.505	INTERGENIC
3R	12840422	3R_12840422_SNP [dm3] 3R_17014700_SNP [dm6]	C	T	1.132e^-5	0.505	UTR_5_PRIME Pxd
2R	5780076	2R_5780076_SNP [dm3] 2R_9892571_SNP [dm6]	A	G	1.139e^-5	0.505	UPSTREAM CG1513 INTRON CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5664071	2R_5664071_SNP [dm3] 2R_9776566_SNP [dm6]	C	T	1.169e^-5	0.505	DOWNSTREAM CR44207 INTRON CG1688
3R	12844012	3R_12844012_SNP [dm3] 3R_17018290_SNP [dm6]	A	T	1.175e^-5	0.505	DOWNSTREAM AdSL INTRON Pxd
2L	9970186	2L_9970186_SNP [dm3] 2L_9970186_SNP [dm6]	T	C	1.195e^-5	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12851364	3R_12851364_SNP [dm3] 3R_17025642_SNP [dm6]	G	T	1.203e^-5	0.505	SYNONYMOUS_CODING Pxd
3R	12852449	3R_12852449_SNP [dm3] 3R_17026727_SNP [dm6]	G	A	1.221e^-5	0.505	SYNONYMOUS_CODING Pxd
X	6822381	X_6822381_INS [dm3] X_6928348_INS [dm6]	A	AA	1.314e^-5	0.505	INTRON CG14431	TF binding site mE1_TFBS_inv
3R	12845598	3R_12845598_SNP [dm3] 3R_17019876_SNP [dm6]	C	T	1.329e^-5	0.505	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12845119	3R_12845119_SNP [dm3] 3R_17019397_SNP [dm6]	G	A	1.335e^-5	0.505	UTR_3_PRIME AdSL INTRON Pxd	TF binding site mE1_TFBS_cad
3R	12845700	3R_12845700_SNP [dm3] 3R_17019978_SNP [dm6]	G	A	1.336e^-5	0.505	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16368090	2R_16368090_SNP [dm3] 2R_20480585_SNP [dm6]	G	A	1.340e^-5	0.505	INTERGENIC
2R	5781437	2R_5781437_SNP [dm3] 2R_9893932_SNP [dm6]	A	C	1.412e^-5	0.505	INTRON CG30007
2L	16967656	2L_16967656_SNP [dm3] 2L_16967656_SNP [dm6]	A	G	1.429e^-5	0.505	INTERGENIC
2R	7470744	2R_7470744_SNP [dm3] 2R_11583239_SNP [dm6]	C	T	1.526e^-5	0.505	NON_SYNONYMOUS_CODING tou UPSTREAM tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	18246627	3R_18246627_SNP [dm3] 3R_22420905_SNP [dm6]	G	C	1.534e^-5	0.505	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6359443	2R_6359443_SNP [dm3] 2R_10471938_SNP [dm6]	C	A	1.588e^-5	0.505	SYNONYMOUS_CODING whd	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12832575	3R_12832575_SNP [dm3] 3R_17006853_SNP [dm6]	T	C	1.597e^-5	0.505	SYNONYMOUS_CODING Irc
3L	5339862	3L_5339862_SNP [dm3] 3L_5346762_SNP [dm6]	C	T	1.601e^-5	0.505	INTRON lama
X	8684505	X_8684505_SNP [dm3] X_8790472_SNP [dm6]	C	A	1.636e^-5	0.505	INTRON Lim1
3R	12838941	3R_12838941_SNP [dm3] 3R_17013219_SNP [dm6]	T	A	1.660e^-5	0.505	DOWNSTREAM CG8907 INTERGENIC
2L	14752781	2L_14752781_SNP [dm3] 2L_14752781_SNP [dm6]	A	G	1.683e^-5	0.505	INTERGENIC
3R	12832324	3R_12832324_SNP [dm3] 3R_17006602_SNP [dm6]	C	T	1.702e^-5	0.505	SYNONYMOUS_CODING Irc
3L	16493203	3L_16493203_SNP [dm3] 3L_16500103_SNP [dm6]	T	C	1.744e^-5	0.505	SYNONYMOUS_CODING st INTRON CG43373
3R	15203155	3R_15203155_SNP [dm3] 3R_19377433_SNP [dm6]	T	C	1.773e^-5	0.505	UPSTREAM CG31245 INTRON Ino80
3R	12846880	3R_12846880_SNP [dm3] 3R_17021158_SNP [dm6]	A	T	1.802e^-5	0.505	UPSTREAM AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12848259	3R_12848259_SNP [dm3] 3R_17022537_SNP [dm6]	C	T	1.841e^-5	0.505	INTRON Pxd
3R	12831875	3R_12831875_SNP [dm3] 3R_17006153_SNP [dm6]	T	A	1.875e^-5	0.505	SYNONYMOUS_CODING Irc
3R	12832039	3R_12832039_SNP [dm3] 3R_17006317_SNP [dm6]	C	A	1.937e^-5	0.505	INTRON Irc
3R	12851856	3R_12851856_SNP [dm3] 3R_17026134_SNP [dm6]	T	C	1.960e^-5	0.505	INTRON Pxd
X	18889016	X_18889016_INS [dm3] X_18994983_INS [dm6]	A	AA	1.998e^-5	0.505	INTRON CG43759
3R	12845673	3R_12845673_SNP [dm3] 3R_17019951_SNP [dm6]	A	G	2.006e^-5	0.505	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8178709	X_8178709_SNP [dm3] X_8284676_SNP [dm6]	A	C	2.018e^-5	0.505	INTRON nAChRalpha3
3R	12838932	3R_12838932_SNP [dm3] 3R_17013210_SNP [dm6]	C	T	2.032e^-5	0.505	DOWNSTREAM CG8907 INTERGENIC
2R	5781559	2R_5781559_SNP [dm3] 2R_9894054_SNP [dm6]	C	T	2.033e^-5	0.505	NON_SYNONYMOUS_CODING CG30007
3R	12841412	3R_12841412_SNP [dm3] 3R_17015690_SNP [dm6]	A	G	2.084e^-5	0.505	UPSTREAM Pxd INTRON Pxd
2L	9970208	2L_9970208_SNP [dm3] 2L_9970208_SNP [dm6]	C	T	2.106e^-5	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14753536	2L_14753536_SNP [dm3] 2L_14753536_SNP [dm6]	C	T	2.114e^-5	0.505	INTERGENIC
X	19530562	X_19530562_SNP [dm3] X_19636529_SNP [dm6]	C	T	2.153e^-5	0.505	INTRON e_y_3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14693633	2L_14693633_SNP [dm3] 2L_14693633_SNP [dm6]	G	A	2.183e^-5	0.505	INTERGENIC
3R	12834780	3R_12834780_SNP [dm3] 3R_17009058_SNP [dm6]	T	C	2.257e^-5	0.505	INTRON CG8907
3R	12843529	3R_12843529_SNP [dm3] 3R_17017807_SNP [dm6]	A	T	2.261e^-5	0.505	DOWNSTREAM AdSL INTRON Pxd
2R	8623240	2R_8623240_SNP [dm3] 2R_12735735_SNP [dm6]	T	A	2.283e^-5	0.505	INTRON CG42663	TF binding site mE1_TFBS_chinmo
2L	1742494	2L_1742494_SNP [dm3] 2L_1742494_SNP [dm6]	A	T	2.287e^-5	0.505	INTRON CG17646
2R	7486659	2R_7486659_DEL [dm3] 2R_11599154_DEL [dm6]	TA	T	2.318e^-5	0.505	INTRON tou	TF binding site BDTNP1_TFBS_dl
2R	7486662	2R_7486662_SNP [dm3] 2R_11599157_SNP [dm6]	A	T	2.318e^-5	0.505	INTRON tou	TF binding site BDTNP1_TFBS_dl
3R	12845669	3R_12845669_SNP [dm3] 3R_17019947_SNP [dm6]	G	A	2.357e^-5	0.505	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12843487	3R_12843487_SNP [dm3] 3R_17017765_SNP [dm6]	G	T	2.392e^-5	0.505	INTRON Pxd
2R	5676426	2R_5676426_SNP [dm3] 2R_9788921_SNP [dm6]	C	T	2.393e^-5	0.505	INTRON CG1688 EXON CR44208
2R	8896544	2R_8896544_SNP [dm3] 2R_13009039_SNP [dm6]	G	A	2.409e^-5	0.505	INTERGENIC	TF binding site mE1_TFBS_cad
X	2589528	X_2589528_SNP [dm3] X_2695495_SNP [dm6]	A	C	2.430e^-5	0.505	SYNONYMOUS_CODING CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7297922	2L_7297922_SNP [dm3] 2L_7297922_SNP [dm6]	A	G	2.485e^-5	0.505	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	12851690	3R_12851690_SNP [dm3] 3R_17025968_SNP [dm6]	T	A	2.504e^-5	0.505	SYNONYMOUS_CODING Pxd
2R	5714209	2R_5714209_SNP [dm3] 2R_9826704_SNP [dm6]	G	T	2.507e^-5	0.505	SYNONYMOUS_CODING dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22386471	3L_22386471_SNP [dm3] 3L_22393371_SNP [dm6]	C	T	2.535e^-5	0.505	INTRON Ten-m
3R	12853527	3R_12853527_SNP [dm3] 3R_17027805_SNP [dm6]	T	A	2.570e^-5	0.505	SYNONYMOUS_CODING Pxd UPSTREAM CG5225
2R	5780578	2R_5780578_SNP [dm3] 2R_9893073_SNP [dm6]	T	A	2.578e^-5	0.505	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
2R	5779845	2R_5779845_SNP [dm3] 2R_9892340_SNP [dm6]	A	T	2.705e^-5	0.505	NON_SYNONYMOUS_CODING CG30007 UPSTREAM CG1513	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12832321	3R_12832321_SNP [dm3] 3R_17006599_SNP [dm6]	A	C	2.734e^-5	0.505	SYNONYMOUS_CODING Irc
2R	6253419	2R_6253419_SNP [dm3] 2R_10365914_SNP [dm6]	G	T	2.745e^-5	0.505	UPSTREAM CG42732 INTRON CG42732
X	2758883	X_2758883_SNP [dm3] X_2864850_SNP [dm6]	G	A	2.749e^-5	0.505	INTRON kirre
2L	12106925	2L_12106925_SNP [dm3] 2L_12106925_SNP [dm6]	G	T	2.754e^-5	0.505	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6 & 1 other
3R	16372058	3R_16372058_SNP [dm3] 3R_20546336_SNP [dm6]	C	G	2.760e^-5	0.505	INTRON Stat92E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9970106	2L_9970106_SNP [dm3] 2L_9970106_SNP [dm6]	T	C	2.775e^-5	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20204283	2R_20204283_INS [dm3] 2R_24316760_INS [dm6]	G	GGAATC	2.794e^-5	0.505	INTERGENIC
2L	1024220	2L_1024220_SNP [dm3] 2L_1024220_SNP [dm6]	C	T	2.819e^-5	0.505	INTRON IA-2
2L	1024228	2L_1024228_SNP [dm3] 2L_1024228_SNP [dm6]	T	C	2.819e^-5	0.505	INTRON IA-2
X	8347950	X_8347950_SNP [dm3] X_8453917_SNP [dm6]	G	A	2.824e^-5	0.505	INTRON org-1
3R	13946927	3R_13946927_DEL [dm3] 3R_18121205_DEL [dm6]	TGCTCAACAACTT...	T	2.894e^-5	0.505	UPSTREAM sr INTRON sr	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12851436	3R_12851436_SNP [dm3] 3R_17025714_SNP [dm6]	C	T	2.900e^-5	0.505	SYNONYMOUS_CODING Pxd
2L	12153668	2L_12153668_SNP [dm3] 2L_12153668_SNP [dm6]	G	T	2.915e^-5	0.505	SYNONYMOUS_CODING CG31760
2L	14716999	2L_14716999_SNP [dm3] 2L_14716999_SNP [dm6]	T	A	2.920e^-5	0.505	INTERGENIC
X	19530285	X_19530285_SNP [dm3] X_19636252_SNP [dm6]	C	T	2.937e^-5	0.505	SYNONYMOUS_CODING e_y_3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	20419707	2L_20419707_SNP [dm3] 2L_20419707_SNP [dm6]	C	T	3.038e^-5	0.515	UPSTREAM snoRNA:Psi18S-525f & 1 other DOWNSTREAM snoRNA:Psi18S-525b & 5 others INTRON Arpc2 EXON snoRNA:Psi18S-640d
X	3946789	X_3946789_SNP [dm3] X_4052756_SNP [dm6]	T	C	3.050e^-5	0.515	INTERGENIC
3L	7823186	3L_7823186_SNP [dm3] 3L_7830086_SNP [dm6]	C	T	3.078e^-5	0.515	INTRON Pdp1
2R	5763531	2R_5763531_SNP [dm3] 2R_9876026_SNP [dm6]	C	T	3.115e^-5	0.517	SYNONYMOUS_CODING CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5882805	2R_5882805_SNP [dm3] 2R_9995300_SNP [dm6]	G	A	3.234e^-5	0.529	UTR_3_PRIME Pka-R2 DOWNSTREAM Pka-R2
3R	26484854	3R_26484854_SNP [dm3] 3R_30659132_SNP [dm6]	G	C	3.258e^-5	0.529	INTERGENIC
2R	9198748	2R_9198748_SNP [dm3] 2R_13311243_SNP [dm6]	C	T	3.270e^-5	0.529	INTERGENIC
3R	12839082	3R_12839082_SNP [dm3] 3R_17013360_SNP [dm6]	A	C	3.298e^-5	0.529	DOWNSTREAM CG8907 INTERGENIC
3R	10506372	3R_10506372_SNP [dm3] 3R_14680650_SNP [dm6]	A	G	3.419e^-5	0.536	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18205502	3L_18205502_SNP [dm3] 3L_18212402_SNP [dm6]	A	T	3.434e^-5	0.536	INTERGENIC
3R	13837491	3R_13837491_SNP [dm3] 3R_18011769_SNP [dm6]	T	G	3.440e^-5	0.536	INTRON cpo
2R	6284223	2R_6284223_SNP [dm3] 2R_10396718_SNP [dm6]	T	C	3.515e^-5	0.536	INTRON CG42732
2R	5870789	2R_5870789_SNP [dm3] 2R_9983284_SNP [dm6]	G	T	3.517e^-5	0.536	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	12842074	3R_12842074_SNP [dm3] 3R_17016352_SNP [dm6]	G	C	3.518e^-5	0.536	UPSTREAM Pxd INTRON Pxd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12852880	3R_12852880_SNP [dm3] 3R_17027158_SNP [dm6]	A	G	3.591e^-5	0.542	INTRON Pxd
2R	5714577	2R_5714577_INS [dm3] 2R_9827072_INS [dm6]	G	GTA	3.613e^-5	0.542	FRAME_SHIFT dila INTRON dila	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17524793	3R_17524793_SNP [dm3] 3R_21699071_SNP [dm6]	T	A	3.669e^-5	0.546	INTRON CG31176
2R	5783798	2R_5783798_SNP [dm3] 2R_9896293_SNP [dm6]	G	T	3.856e^-5	0.568	NON_SYNONYMOUS_CODING CG30007
3R	15160243	3R_15160243_SNP [dm3] 3R_19334521_SNP [dm6]	C	T	3.893e^-5	0.568	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	10986064	3L_10986064_SNP [dm3] 3L_10992964_SNP [dm6]	A	T	3.946e^-5	0.568	INTRON klu
3R	17524696	3R_17524696_SNP [dm3] 3R_21698974_SNP [dm6]	A	T	3.955e^-5	0.568	INTRON CG31176
3R	9770520	3R_9770520_SNP [dm3] 3R_13944798_SNP [dm6]	G	A	3.977e^-5	0.568	SYNONYMOUS_CODING Art6	TF binding site mE1_TFBS_cad
3R	12851801	3R_12851801_SNP [dm3] 3R_17026079_SNP [dm6]	C	T	3.996e^-5	0.568	SYNONYMOUS_CODING Pxd
3R	12831592	3R_12831592_SNP [dm3] 3R_17005870_SNP [dm6]	T	A	4.051e^-5	0.571	SYNONYMOUS_CODING Irc
2L	12126054	2L_12126054_SNP [dm3] 2L_12126054_SNP [dm6]	A	G	4.120e^-5	0.575	SYNONYMOUS_CODING CG17211
2R	2953499	2R_2953499_SNP [dm3] 2R_7065994_SNP [dm6]	G	A	4.218e^-5	0.575	SYNONYMOUS_STOP Tsp42Er
2R	5784679	2R_5784679_SNP [dm3] 2R_9897174_SNP [dm6]	A	G	4.344e^-5	0.575	SYNONYMOUS_CODING CG30007
X	5092641	X_5092641_SNP [dm3] X_5198608_SNP [dm6]	T	A	4.345e^-5	0.575	INTRON rg & 1 other
2R	5784731	2R_5784731_SNP [dm3] 2R_9897226_SNP [dm6]	C	A	4.360e^-5	0.575	NON_SYNONYMOUS_CODING CG30007
3R	5694299	3R_5694299_SNP [dm3] 3R_9868577_SNP [dm6]	A	G	4.377e^-5	0.575	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
2R	11913905	2R_11913905_SNP [dm3] 2R_16026400_SNP [dm6]	G	A	4.389e^-5	0.575	SYNONYMOUS_CODING casp
X	8347953	X_8347953_SNP [dm3] X_8453920_SNP [dm6]	A	G	4.389e^-5	0.575	INTRON org-1
2L	14799553	2L_14799553_SNP [dm3] 2L_14799553_SNP [dm6]	A	T	4.449e^-5	0.575	INTERGENIC
3R	10506472	3R_10506472_SNP [dm3] 3R_14680750_SNP [dm6]	C	G	4.517e^-5	0.575	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12841357	3R_12841357_SNP [dm3] 3R_17015635_SNP [dm6]	T	C	4.558e^-5	0.575	UPSTREAM Pxd INTRON Pxd
3L	13265006	3L_13265006_SNP [dm3] 3L_13271906_SNP [dm6]	A	G	4.581e^-5	0.575	INTRON caps
2R	7457252	2R_7457252_SNP [dm3] 2R_11569747_SNP [dm6]	G	A	4.640e^-5	0.575	INTERGENIC
2R	6252854	2R_6252854_SNP [dm3] 2R_10365349_SNP [dm6]	C	T	4.640e^-5	0.575	UPSTREAM CG42732 INTRON CG42732
2R	7457529	2R_7457529_SNP [dm3] 2R_11570024_SNP [dm6]	T	G	4.689e^-5	0.575	INTERGENIC
2R	6569028	2R_6569028_INS [dm3] 2R_10681523_INS [dm6]	T	TT	4.722e^-5	0.575	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1743253	2L_1743253_SNP [dm3] 2L_1743253_SNP [dm6]	G	C	4.725e^-5	0.575	INTRON CG17646
2R	5882844	2R_5882844_SNP [dm3] 2R_9995339_SNP [dm6]	T	C	4.774e^-5	0.575	UTR_3_PRIME Pka-R2 DOWNSTREAM Pka-R2
X	20888793	X_20888793_SNP [dm3] X_21017766_SNP [dm6]	A	T	4.778e^-5	0.575	INTERGENIC
3L	11021050	3L_11021050_SNP [dm3] 3L_11027950_SNP [dm6]	C	G	4.828e^-5	0.575	DOWNSTREAM CG32079 INTRON CG32081
3R	12832583	3R_12832583_SNP [dm3] 3R_17006861_SNP [dm6]	A	G	4.873e^-5	0.575	NON_SYNONYMOUS_CODING Irc
3R	12831005	3R_12831005_SNP [dm3] 3R_17005283_SNP [dm6]	C	T	4.902e^-5	0.575	NON_SYNONYMOUS_CODING Irc
2R	8352395	2R_8352395_SNP [dm3] 2R_12464890_SNP [dm6]	G	C	4.904e^-5	0.575	UTR_3_PRIME Lac DOWNSTREAM dgt5
X	17342095	X_17342095_SNP [dm3] X_17448062_SNP [dm6]	G	C	4.946e^-5	0.575	SYNONYMOUS_CODING p-cup DOWNSTREAM CG8568	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	5743682	2R_5743682_SNP [dm3] 2R_9856177_SNP [dm6]	G	A	4.949e^-5	0.575	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18246642	3R_18246642_SNP [dm3] 3R_22420920_SNP [dm6]	T	A	4.981e^-5	0.575	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11163763	2R_11163763_SNP [dm3] 2R_15276258_SNP [dm6]	C	T	5.029e^-5	0.575	INTRON Trpm
3R	12841912	3R_12841912_SNP [dm3] 3R_17016190_SNP [dm6]	T	C	5.073e^-5	0.575	UPSTREAM Pxd INTRON Pxd
X	19532450	X_19532450_SNP [dm3] X_19638417_SNP [dm6]	C	T	5.247e^-5	0.575	UPSTREAM Rcd-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	15015059	3L_15015059_SNP [dm3] 3L_15021959_SNP [dm6]	G	A	5.264e^-5	0.575	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	19532246	X_19532246_SNP [dm3] X_19638213_SNP [dm6]	C	T	5.283e^-5	0.575	UTR_5_PRIME e_y_3 UPSTREAM Rcd-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	12833413	3R_12833413_SNP [dm3] 3R_17007691_SNP [dm6]	G	T	5.310e^-5	0.575	UPSTREAM CG8907 DOWNSTREAM Irc INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	12831787	3R_12831787_SNP [dm3] 3R_17006065_SNP [dm6]	A	G	5.332e^-5	0.575	INTRON Irc
2L	1024221	2L_1024221_SNP [dm3] 2L_1024221_SNP [dm6]	A	G	5.417e^-5	0.575	INTRON IA-2
2R	5658214	2R_5658214_SNP [dm3] 2R_9770709_SNP [dm6]	T	G	5.456e^-5	0.575	INTRON CG1688
3R	12841517	3R_12841517_SNP [dm3] 3R_17015795_SNP [dm6]	C	A	5.472e^-5	0.575	UPSTREAM Pxd INTRON Pxd
2L	11169665	2L_11169665_SNP [dm3] 2L_11169665_SNP [dm6]	T	A	5.538e^-5	0.575	INTRON Ca-beta
3R	12836742	3R_12836742_SNP [dm3] 3R_17011020_SNP [dm6]	G	A	5.539e^-5	0.575	INTRON CG8907
2R	7457533	2R_7457533_SNP [dm3] 2R_11570028_SNP [dm6]	A	T	5.540e^-5	0.575	INTERGENIC
2R	7457580	2R_7457580_DEL [dm3] 2R_11570075_DEL [dm6]	TCACTTTTGCTGACACTTCC...	T	5.540e^-5	0.575	INTERGENIC
2R	7457638	2R_7457638_SNP [dm3] 2R_11570133_SNP [dm6]	G	A	5.540e^-5	0.575	INTERGENIC
3R	10374651	3R_10374651_SNP [dm3] 3R_14548929_SNP [dm6]	A	G	5.571e^-5	0.575	INTRON Pde6
3R	12831638	3R_12831638_SNP [dm3] 3R_17005916_SNP [dm6]	C	A	5.604e^-5	0.575	SYNONYMOUS_CODING Irc
2R	7457641	2R_7457641_SNP [dm3] 2R_11570136_SNP [dm6]	A	T	5.626e^-5	0.575	INTERGENIC
3R	18246640	3R_18246640_SNP [dm3] 3R_22420918_SNP [dm6]	A	C	5.664e^-5	0.575	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3283715	3R_3283715_SNP [dm3] 3R_7457993_SNP [dm6]	G	C	5.700e^-5	0.575	INTERGENIC
3L	11147876	3L_11147876_SNP [dm3] 3L_11154776_SNP [dm6]	A	T	5.716e^-5	0.575	INTRON CG32082
X	5845338	X_5845338_SNP [dm3] X_5951305_SNP [dm6]	A	C	5.746e^-5	0.575	SYNONYMOUS_CODING CG32755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12832233	3R_12832233_SNP [dm3] 3R_17006511_SNP [dm6]	T	C	5.756e^-5	0.575	INTRON Irc
2R	7488564	2R_7488564_SNP [dm3] 2R_11601059_SNP [dm6]	G	A	5.853e^-5	0.575	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	16625057	2R_16625057_SNP [dm3] 2R_20737552_SNP [dm6]	A	T	5.870e^-5	0.575	INTRON dpr
2R	8352922	2R_8352922_SNP [dm3] 2R_12465417_SNP [dm6]	T	C	5.874e^-5	0.575	UTR_3_PRIME Lac DOWNSTREAM dgt5
3R	12843477	3R_12843477_SNP [dm3] 3R_17017755_SNP [dm6]	C	T	5.897e^-5	0.575	INTRON Pxd
3R	12840256	3R_12840256_SNP [dm3] 3R_17014534_SNP [dm6]	T	C	5.911e^-5	0.575	UPSTREAM Pxd INTERGENIC
X	20888791	X_20888791_SNP [dm3] X_21017764_SNP [dm6]	T	G	5.916e^-5	0.575	INTERGENIC
3R	12834191	3R_12834191_SNP [dm3] 3R_17008469_SNP [dm6]	G	A	5.917e^-5	0.575	UPSTREAM CG8907 INTRON CG8907
3L	16771171	3L_16771171_SNP [dm3] 3L_16778071_SNP [dm6]	A	C	5.927e^-5	0.575	SYNONYMOUS_CODING CG13025 DOWNSTREAM Nrt	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4963484	3L_4963484_SNP [dm3] 3L_4963484_SNP [dm6]	A	G	5.974e^-5	0.575	INTRON Con
3R	12839026	3R_12839026_DEL [dm3] 3R_17013304_DEL [dm6]	TTTCGCTTTCTGCGGCGGT...	T	5.994e^-5	0.575	DOWNSTREAM CG8907 INTERGENIC
2L	4646637	2L_4646637_SNP [dm3] 2L_4646637_SNP [dm6]	A	G	6.012e^-5	0.575	UPSTREAM CG43798 DOWNSTREAM CG15635 INTERGENIC
3L	5338719	3L_5338719_INS [dm3] 3L_5345619_INS [dm6]	T	TAT	6.021e^-5	0.575	INTRON lama
2R	18347222	2R_18347222_SNP [dm3] 2R_22459717_SNP [dm6]	C	A	6.026e^-5	0.575	INTRON CG10384
3R	12834939	3R_12834939_SNP [dm3] 3R_17009217_SNP [dm6]	T	G	6.058e^-5	0.575	INTRON CG8907
2L	7211501	2L_7211501_SNP [dm3] 2L_7211501_SNP [dm6]	T	C	6.085e^-5	0.575	INTRON CG13784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7381823	2R_7381823_SNP [dm3] 2R_11494318_SNP [dm6]	A	T	6.132e^-5	0.575	INTRON inv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10758110	2L_10758110_SNP [dm3] 2L_10758110_SNP [dm6]	C	T	6.149e^-5	0.575	INTERGENIC
2R	11913808	2R_11913808_SNP [dm3] 2R_16026303_SNP [dm6]	C	T	6.211e^-5	0.575	INTRON casp
2L	1742112	2L_1742112_SNP [dm3] 2L_1742112_SNP [dm6]	T	C	6.244e^-5	0.575	INTRON CG17646	TF binding site mE1_TFBS_chinmo
2L	10864904	2L_10864904_SNP [dm3] 2L_10864904_SNP [dm6]	T	A	6.265e^-5	0.575	UPSTREAM CR43807 INTERGENIC
2R	5699811	2R_5699811_SNP [dm3] 2R_9812306_SNP [dm6]	G	C	6.304e^-5	0.575	INTRON CG1648
3L	18775738	3L_18775738_SNP [dm3] 3L_18782638_SNP [dm6]	G	A	6.352e^-5	0.575	INTRON ftz-f1
3R	13946615	3R_13946615_SNP [dm3] 3R_18120893_SNP [dm6]	G	A	6.391e^-5	0.575	INTRON sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12106914	2L_12106914_SNP [dm3] 2L_12106914_SNP [dm6]	A	T	6.394e^-5	0.575	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6 & 1 other
2R	7030459	2R_7030459_SNP [dm3] 2R_11142954_SNP [dm6]	T	A	6.400e^-5	0.575	UTR_5_PRIME CG13229
2R	7457656	2R_7457656_SNP [dm3] 2R_11570151_SNP [dm6]	C	G	6.407e^-5	0.575	INTERGENIC
2L	10832903	2L_10832903_SNP [dm3] 2L_10832903_SNP [dm6]	T	G	6.412e^-5	0.575	INTRON Nos
2R	7457520	2R_7457520_SNP [dm3] 2R_11570015_SNP [dm6]	T	C	6.467e^-5	0.578	INTERGENIC
X	3929190	X_3929190_SNP [dm3] X_4035157_SNP [dm6]	A	T	6.630e^-5	0.584	INTERGENIC
X	6613791	X_6613791_SNP [dm3] X_6719758_SNP [dm6]	C	G	6.656e^-5	0.584	DOWNSTREAM CG3168 & 1 other INTERGENIC
3R	12830782	3R_12830782_SNP [dm3] 3R_17005060_SNP [dm6]	T	G	6.722e^-5	0.584	SPLICE_SITE_REGION Irc INTRON Irc
3R	12832208	3R_12832208_SNP [dm3] 3R_17006486_SNP [dm6]	T	C	6.750e^-5	0.584	SYNONYMOUS_CODING Irc
3R	18246604	3R_18246604_SNP [dm3] 3R_22420882_SNP [dm6]	G	A	6.757e^-5	0.584	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11016157	3L_11016157_SNP [dm3] 3L_11023057_SNP [dm6]	A	G	6.775e^-5	0.584	UPSTREAM Fad2 INTERGENIC
2R	5676401	2R_5676401_SNP [dm3] 2R_9788896_SNP [dm6]	A	G	6.784e^-5	0.584	INTRON CG1688 EXON CR44208
2R	7457405	2R_7457405_SNP [dm3] 2R_11569900_SNP [dm6]	G	A	6.891e^-5	0.584	INTERGENIC
2R	7457422	2R_7457422_SNP [dm3] 2R_11569917_SNP [dm6]	C	T	6.891e^-5	0.584	INTERGENIC
2L	9636245	2L_9636245_SNP [dm3] 2L_9636245_SNP [dm6]	G	C	6.898e^-5	0.584	INTRON Apoltp
3R	15179921	3R_15179921_SNP [dm3] 3R_19354199_SNP [dm6]	A	G	6.960e^-5	0.584	SYNONYMOUS_CODING CG43203	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6359971	2R_6359971_SNP [dm3] 2R_10472466_SNP [dm6]	A	G	7.001e^-5	0.584	INTRON whd	TF binding site mE1_TFBS_inv
3L	14974035	3L_14974035_SNP [dm3] 3L_14980935_SNP [dm6]	A	C	7.032e^-5	0.584	NON_SYNONYMOUS_CODING CG3349
2R	7381824	2R_7381824_SNP [dm3] 2R_11494319_SNP [dm6]	T	A	7.057e^-5	0.584	INTRON inv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12848826	3R_12848826_SNP [dm3] 3R_17023104_SNP [dm6]	T	C	7.067e^-5	0.584	INTRON Pxd
X	8837133	X_8837133_SNP [dm3] X_8943100_SNP [dm6]	T	G	7.079e^-5	0.584	INTRON rdgA
3R	12832692	3R_12832692_SNP [dm3] 3R_17006970_SNP [dm6]	C	T	7.125e^-5	0.584	INTRON Irc
2R	5680433	2R_5680433_SNP [dm3] 2R_9792928_SNP [dm6]	T	C	7.133e^-5	0.584	UPSTREAM CG1698 INTRON CG1688
2L	12106949	2L_12106949_SNP [dm3] 2L_12106949_SNP [dm6]	C	T	7.135e^-5	0.584	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6 & 1 other
2L	9982694	2L_9982694_SNP [dm3] 2L_9982694_SNP [dm6]	C	A	7.156e^-5	0.584	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2R	7488538	2R_7488538_SNP [dm3] 2R_11601033_SNP [dm6]	C	T	7.214e^-5	0.586	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	9970134	2L_9970134_SNP [dm3] 2L_9970134_SNP [dm6]	C	G	7.243e^-5	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10506416	3R_10506416_SNP [dm3] 3R_14680694_SNP [dm6]	C	A	7.378e^-5	0.587	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	15152898	X_15152898_SNP [dm3] X_15258865_SNP [dm6]	A	G	7.382e^-5	0.587	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	7381869	2R_7381869_DEL [dm3] 2R_11494364_DEL [dm6]	ACCTTTTGACATATTACAAA...	A	7.391e^-5	0.587	INTRON inv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12848235	3R_12848235_SNP [dm3] 3R_17022513_SNP [dm6]	T	C	7.393e^-5	0.587	INTRON Pxd
3R	12837124	3R_12837124_DEL [dm3] 3R_17011402_DEL [dm6]	CA	C	7.424e^-5	0.587	INTRON CG8907	TF binding site mE1_TFBS_cad
2L	14776047	2L_14776047_SNP [dm3] 2L_14776047_SNP [dm6]	T	C	7.453e^-5	0.587	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	12837123	3R_12837123_SNP [dm3] 3R_17011401_SNP [dm6]	T	C	7.534e^-5	0.59	INTRON CG8907	TF binding site mE1_TFBS_cad
3R	12015564	3R_12015564_SNP [dm3] 3R_16189842_SNP [dm6]	T	A	7.551e^-5	0.59	INTRON sra
2L	14782978	2L_14782978_SNP [dm3] 2L_14782978_SNP [dm6]	T	A	7.626e^-5	0.593	DOWNSTREAM CG18636 EXON CR15280
2R	12339744	2R_12339744_SNP [dm3] 2R_16452239_SNP [dm6]	G	T	7.684e^-5	0.596	INTERGENIC
2L	14700490	2L_14700490_INS [dm3] 2L_14700490_INS [dm6]	A	TG	7.740e^-5	0.597	INTERGENIC
3R	26484926	3R_26484926_SNP [dm3] 3R_30659204_SNP [dm6]	G	A	7.807e^-5	0.6	INTERGENIC
2R	1373350	2R_1373350_SNP [dm3] 2R_5485845_SNP [dm6]	T	C	7.868e^-5	0.602	INTRON CG30440
2L	6227583	2L_6227583_SNP [dm3] 2L_6227583_SNP [dm6]	G	T	7.903e^-5	0.602	DOWNSTREAM Ugt37b1 INTERGENIC
2L	4646770	2L_4646770_SNP [dm3] 2L_4646770_SNP [dm6]	T	C	7.932e^-5	0.602	UPSTREAM CG43798 DOWNSTREAM CG15635 INTERGENIC
3L	11017013	3L_11017013_SNP [dm3] 3L_11023913_SNP [dm6]	C	A	8.089e^-5	0.603	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9277090	3R_9277090_SNP [dm3] 3R_13451368_SNP [dm6]	C	T	8.089e^-5	0.603	INTRON CG14372
2L	12110546	2L_12110546_SNP [dm3] 2L_12110546_SNP [dm6]	C	T	8.090e^-5	0.603	UTR_3_PRIME Phae1 UPSTREAM Phae2 DOWNSTREAM Phae1	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	26484935	3R_26484935_SNP [dm3] 3R_30659213_SNP [dm6]	T	C	8.105e^-5	0.603	INTERGENIC
2R	14683489	2R_14683489_SNP [dm3] 2R_18795984_SNP [dm6]	A	C	8.188e^-5	0.603	SYNONYMOUS_CODING MFS15 DOWNSTREAM l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20854182	2L_20854182_SNP [dm3] 2L_20854182_SNP [dm6]	A	G	8.225e^-5	0.603	INTRON twit
2L	14776795	2L_14776795_SNP [dm3] 2L_14776795_SNP [dm6]	A	T	8.273e^-5	0.603	INTERGENIC
2L	14717000	2L_14717000_SNP [dm3] 2L_14717000_SNP [dm6]	A	T	8.292e^-5	0.603	INTERGENIC
2R	6365761	2R_6365761_DEL [dm3] 2R_10478256_DEL [dm6]	GC	G	8.354e^-5	0.603	DOWNSTREAM trsn INTRON whd EXON CR45134	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	12106117	2L_12106117_SNP [dm3] 2L_12106117_SNP [dm6]	C	T	8.362e^-5	0.603	SYNONYMOUS_CODING Aats-thr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2936401	X_2936401_SNP [dm3] X_3042368_SNP [dm6]	T	C	8.375e^-5	0.603	INTRON kirre	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5885619	3L_5885619_SNP [dm3] 3L_5892519_SNP [dm6]	T	G	8.405e^-5	0.603	INTERGENIC
2R	6363968	2R_6363968_SNP [dm3] 2R_10476463_SNP [dm6]	C	G	8.441e^-5	0.603	UPSTREAM whd INTRON whd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	22425326	3L_22425326_SNP [dm3] 3L_22432226_SNP [dm6]	G	C	8.443e^-5	0.603	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10490937	3L_10490937_SNP [dm3] 3L_10497837_SNP [dm6]	G	A	8.459e^-5	0.603	INTRON A2bp1
3R	12095327	3R_12095327_SNP [dm3] 3R_16269605_SNP [dm6]	C	T	8.486e^-5	0.603	SYNONYMOUS_CODING Mat89Ba	TF binding site mE1_TFBS_sens
3R	16129038	3R_16129038_SNP [dm3] 3R_20303316_SNP [dm6]	C	A	8.537e^-5	0.603	UTR_3_PRIME cic DOWNSTREAM CG4367
3R	12832005	3R_12832005_SNP [dm3] 3R_17006283_SNP [dm6]	C	A	8.589e^-5	0.603	SPLICE_SITE_REGION Irc INTRON Irc
3R	12832029	3R_12832029_SNP [dm3] 3R_17006307_SNP [dm6]	T	A	8.589e^-5	0.603	INTRON Irc
3R	12832033	3R_12832033_SNP [dm3] 3R_17006311_SNP [dm6]	G	A	8.589e^-5	0.603	INTRON Irc
2R	7026435	2R_7026435_SNP [dm3] 2R_11138930_SNP [dm6]	T	A	8.744e^-5	0.611	DOWNSTREAM CG13229 INTRON BBS4
2R	6359753	2R_6359753_DEL [dm3] 2R_10472248_DEL [dm6]	ATAC	A	8.794e^-5	0.611	INTRON whd	TF binding site mE1_TFBS_inv
2L	14776048	2L_14776048_SNP [dm3] 2L_14776048_SNP [dm6]	A	C	8.888e^-5	0.611	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	5713048	2R_5713048_SNP [dm3] 2R_9825543_SNP [dm6]	G	A	8.896e^-5	0.611	SYNONYMOUS_CODING dila	TF binding site mE1_TFBS_cad
2L	9982693	2L_9982693_SNP [dm3] 2L_9982693_SNP [dm6]	C	A	8.911e^-5	0.611	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	12106946	2L_12106946_SNP [dm3] 2L_12106946_SNP [dm6]	A	T	8.956e^-5	0.611	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6 & 1 other
3L	5338725	3L_5338725_SNP [dm3] 3L_5345625_SNP [dm6]	T	C	9.008e^-5	0.611	INTRON lama
2L	6235685	2L_6235685_SNP [dm3] 2L_6235685_SNP [dm6]	A	G	9.008e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc
3L	11018009	3L_11018009_SNP [dm3] 3L_11024909_SNP [dm6]	C	T	9.015e^-5	0.611	UPSTREAM CG32079 DOWNSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9675812	3L_9675812_SNP [dm3] 3L_9682712_SNP [dm6]	A	G	9.017e^-5	0.611	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8353569	2R_8353569_SNP [dm3] 2R_12466064_SNP [dm6]	G	C	9.117e^-5	0.615	DOWNSTREAM Lac INTRON dgt5	TF binding site mE1_TFBS_cad
3R	12831640	3R_12831640_SNP [dm3] 3R_17005918_SNP [dm6]	A	G	9.160e^-5	0.616	SYNONYMOUS_CODING Irc
2L	13578979	2L_13578979_SNP [dm3] 2L_13578979_SNP [dm6]	T	C	9.217e^-5	0.617	INTRON kuz
2L	9982684	2L_9982684_DEL [dm3] 2L_9982684_DEL [dm6]	ACTTCTTC	G	9.343e^-5	0.62	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	9982717	2L_9982717_DEL [dm3] 2L_9982717_DEL [dm6]	TCCTTC	T	9.343e^-5	0.62	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2R	6369314	2R_6369314_SNP [dm3] 2R_10481809_SNP [dm6]	A	T	9.353e^-5	0.62	UTR_3_PRIME CG17765 DOWNSTREAM lola & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3R	12826863	3R_12826863_SNP [dm3] 3R_17001141_SNP [dm6]	T	A	9.488e^-5	0.623	SYNONYMOUS_CODING CG16941	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11144086	3R_11144086_SNP [dm3] 3R_15318364_SNP [dm6]	A	C	9.548e^-5	0.623	UTR_3_PRIME CG6276 DOWNSTREAM CG14866	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	14776039	2L_14776039_DEL [dm3] 2L_14776039_DEL [dm6]	AGATG	A	9.562e^-5	0.623	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	6362082	2R_6362082_SNP [dm3] 2R_10474577_SNP [dm6]	G	T	9.587e^-5	0.623	INTRON whd
X	7984765	X_7984765_INS [dm3] X_8090732_INS [dm6]	C	CTAATACGTC	9.594e^-5	0.623	INTRON Ubc-E2H	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6308392	2R_6308392_SNP [dm3] 2R_10420887_SNP [dm6]	T	A	9.657e^-5	0.623	SYNONYMOUS_CODING CG11825 UPSTREAM CG33474	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	14137247	X_14137247_SNP [dm3] X_14243214_SNP [dm6]	G	T	9.688e^-5	0.623	UPSTREAM CG32599 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7297909	2L_7297909_DEL [dm3] 2L_7297909_DEL [dm6]	AA	A	9.726e^-5	0.623	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	11426405	2L_11426405_SNP [dm3] 2L_11426405_SNP [dm6]	A	G	9.728e^-5	0.623	INTERGENIC
2L	1743232	2L_1743232_SNP [dm3] 2L_1743232_SNP [dm6]	G	C	9.763e^-5	0.623	INTRON CG17646
X	8684438	X_8684438_SNP [dm3] X_8790405_SNP [dm6]	T	G	9.827e^-5	0.623	INTRON Lim1
2L	9970166	2L_9970166_SNP [dm3] 2L_9970166_SNP [dm6]	T	A	9.884e^-5	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8631559	2R_8631559_SNP [dm3] 2R_12744054_SNP [dm6]	G	A	9.934e^-5	0.623	INTRON CG42663	TF binding site mE1_TFBS_Trl
2L	12106693	2L_12106693_SNP [dm3] 2L_12106693_SNP [dm6]	C	T	1.006e^-4	0.623	SYNONYMOUS_CODING Aats-thr DOWNSTREAM Rab6	TF binding site mE1_TFBS_cad
3R	12852386	3R_12852386_SNP [dm3] 3R_17026664_SNP [dm6]	T	C	1.011e^-4	0.623	SYNONYMOUS_CODING Pxd
2L	14700498	2L_14700498_SNP [dm3] 2L_14700498_SNP [dm6]	A	G	1.014e^-4	0.623	INTERGENIC
2R	9248581	2R_9248581_SNP [dm3] 2R_13361076_SNP [dm6]	C	A	1.017e^-4	0.623	DOWNSTREAM CR45312 INTERGENIC
2L	14776052	2L_14776052_SNP [dm3] 2L_14776052_SNP [dm6]	A	T	1.019e^-4	0.623	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	14776059	2L_14776059_DEL [dm3] 2L_14776059_DEL [dm6]	TAAA	G	1.019e^-4	0.623	INTERGENIC
2R	7888558	2R_7888558_SNP [dm3] 2R_12001053_SNP [dm6]	C	T	1.020e^-4	0.623	DOWNSTREAM otk INTERGENIC
3R	12831742	3R_12831742_SNP [dm3] 3R_17006020_SNP [dm6]	T	G	1.020e^-4	0.623	INTRON Irc
2L	1674897	2L_1674897_SNP [dm3] 2L_1674897_SNP [dm6]	C	T	1.025e^-4	0.623	INTRON chinmo
3R	15202112	3R_15202112_SNP [dm3] 3R_19376390_SNP [dm6]	C	T	1.026e^-4	0.623	NON_SYNONYMOUS_CODING CG31245 UPSTREAM CG31404 INTRON Ino80
2L	14776050	2L_14776050_SNP [dm3] 2L_14776050_SNP [dm6]	A	T	1.031e^-4	0.623	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	5658408	2R_5658408_SNP [dm3] 2R_9770903_SNP [dm6]	G	A	1.032e^-4	0.623	INTRON CG1688
2L	9970652	2L_9970652_SNP [dm3] 2L_9970652_SNP [dm6]	T	A	1.034e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7452430	2R_7452430_DEL [dm3] 2R_11564925_DEL [dm6]	GCCG	G	1.034e^-4	0.623	INTERGENIC
2L	12168662	2L_12168662_SNP [dm3] 2L_12168662_SNP [dm6]	A	T	1.035e^-4	0.623	INTRON CG31760
2R	6439820	2R_6439820_SNP [dm3] 2R_10552315_SNP [dm6]	C	A	1.039e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	11391713	2L_11391713_SNP [dm3] 2L_11391713_SNP [dm6]	G	C	1.046e^-4	0.623	INTRON CR43681	regulatory region REDfly_CRMs
X	18446556	X_18446556_SNP [dm3] X_18552523_SNP [dm6]	G	C	1.055e^-4	0.623	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19795673	3R_19795673_SNP [dm3] 3R_23969951_SNP [dm6]	G	T	1.055e^-4	0.623	INTRON CG31140
3R	11712897	3R_11712897_SNP [dm3] 3R_15887175_SNP [dm6]	G	C	1.056e^-4	0.623	INTERGENIC
3R	12808542	3R_12808542_SNP [dm3] 3R_16982820_SNP [dm6]	C	T	1.057e^-4	0.623	UPSTREAM Ahcy89E DOWNSTREAM CG18622 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13985350	3R_13985350_SNP [dm3] 3R_18159628_SNP [dm6]	T	C	1.057e^-4	0.623	DOWNSTREAM CG14315 EXON CR45104
2L	12106880	2L_12106880_INS [dm3] 2L_12106880_INS [dm6]	A	AA	1.060e^-4	0.623	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6	TF binding site mE1_TFBS_cad
2L	19748654	2L_19748654_SNP [dm3] 2L_19748654_SNP [dm6]	G	A	1.065e^-4	0.624	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16494315	3L_16494315_SNP [dm3] 3L_16501215_SNP [dm6]	A	T	1.070e^-4	0.624	DOWNSTREAM st & 1 other INTRON CG43373
3L	7823148	3L_7823148_SNP [dm3] 3L_7830048_SNP [dm6]	G	A	1.071e^-4	0.624	INTRON Pdp1
3L	5338334	3L_5338334_SNP [dm3] 3L_5345234_SNP [dm6]	G	A	1.083e^-4	0.626	SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad
X	17205583	X_17205583_SNP [dm3] X_17311550_SNP [dm6]	G	T	1.086e^-4	0.626	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20794075	2L_20794075_SNP [dm3] 2L_20794075_SNP [dm6]	G	A	1.094e^-4	0.626	START_GAINED vari UTR_5_PRIME vari UPSTREAM CR44146 INTRON vari	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14700496	2L_14700496_SNP [dm3] 2L_14700496_SNP [dm6]	T	A	1.095e^-4	0.626	INTERGENIC
2L	14776056	2L_14776056_SNP [dm3] 2L_14776056_SNP [dm6]	G	T	1.097e^-4	0.626	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	16874520	3L_16874520_SNP [dm3] 3L_16881420_SNP [dm6]	A	T	1.100e^-4	0.626	INTRON Lmpt
2R	6359972	2R_6359972_SNP [dm3] 2R_10472467_SNP [dm6]	T	C	1.100e^-4	0.626	SPLICE_SITE_REGION whd INTRON whd	TF binding site mE1_TFBS_inv
3L	5706169	3L_5706169_SNP [dm3] 3L_5713069_SNP [dm6]	C	A	1.101e^-4	0.626	UPSTREAM CG44521 INTRON sif
2R	6284218	2R_6284218_SNP [dm3] 2R_10396713_SNP [dm6]	A	G	1.107e^-4	0.626	INTRON CG42732
3L	17731687	3L_17731687_SNP [dm3] 3L_17738587_SNP [dm6]	G	A	1.110e^-4	0.626	INTRON Ccn
2L	14776045	2L_14776045_SNP [dm3] 2L_14776045_SNP [dm6]	A	T	1.112e^-4	0.626	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	6365484	2R_6365484_SNP [dm3] 2R_10477979_SNP [dm6]	A	C	1.119e^-4	0.627	UPSTREAM CR45134 INTRON whd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16967573	2L_16967573_SNP [dm3] 2L_16967573_SNP [dm6]	G	A	1.121e^-4	0.627	INTERGENIC
X	12855543	X_12855543_SNP [dm3] X_12961510_SNP [dm6]	T	G	1.127e^-4	0.627	DOWNSTREAM CG32642 INTERGENIC
2L	9982627	2L_9982627_SNP [dm3] 2L_9982627_SNP [dm6]	T	A	1.133e^-4	0.627	INTERGENIC	regulatory region REDfly_CRMs
X	19530225	X_19530225_SNP [dm3] X_19636192_SNP [dm6]	T	C	1.137e^-4	0.627	SYNONYMOUS_CODING e_y_3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	12849213	3R_12849213_SNP [dm3] 3R_17023491_SNP [dm6]	A	G	1.138e^-4	0.627	INTRON Pxd
3L	10711280	3L_10711280_SNP [dm3] 3L_10718180_SNP [dm6]	G	A	1.143e^-4	0.627	INTERGENIC
3L	11015542	3L_11015542_SNP [dm3] 3L_11022442_SNP [dm6]	A	C	1.143e^-4	0.627	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4846381	X_4846381_SNP [dm3] X_4952348_SNP [dm6]	C	T	1.145e^-4	0.627	SYNONYMOUS_CODING Ptp4E	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22453406	3R_22453406_SNP [dm3] 3R_26627684_SNP [dm6]	T	A	1.147e^-4	0.627	UPSTREAM TwdlO DOWNSTREAM TwdlK INTERGENIC
2L	9982705	2L_9982705_SNP [dm3] 2L_9982705_SNP [dm6]	T	G	1.155e^-4	0.63	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3R	12852488	3R_12852488_SNP [dm3] 3R_17026766_SNP [dm6]	T	A	1.186e^-4	0.64	SYNONYMOUS_CODING Pxd
3R	17528840	3R_17528840_SNP [dm3] 3R_21703118_SNP [dm6]	A	G	1.190e^-4	0.64	INTRON CG31176
3R	12831962	3R_12831962_SNP [dm3] 3R_17006240_SNP [dm6]	G	A	1.191e^-4	0.64	SYNONYMOUS_CODING Irc
3R	16722436	3R_16722436_SNP [dm3] 3R_20896714_SNP [dm6]	C	T	1.192e^-4	0.64	SYNONYMOUS_CODING CG10830	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5789325	2R_5789325_SNP [dm3] 2R_9901820_SNP [dm6]	A	C	1.192e^-4	0.64	INTRON CG1441	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12106999	2L_12106999_SNP [dm3] 2L_12106999_SNP [dm6]	T	C	1.195e^-4	0.64	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6 & 1 other
X	20878431	X_20878431_SNP [dm3] X_21007404_SNP [dm6]	T	C	1.202e^-4	0.642	INTERGENIC
3R	12831570	3R_12831570_SNP [dm3] 3R_17005848_SNP [dm6]	G	A	1.218e^-4	0.644	NON_SYNONYMOUS_CODING Irc
3R	17936071	3R_17936071_SNP [dm3] 3R_22110349_SNP [dm6]	G	T	1.218e^-4	0.644	UPSTREAM CG5778 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6451376	X_6451376_SNP [dm3] X_6557343_SNP [dm6]	C	A	1.220e^-4	0.644	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	2936673	X_2936673_SNP [dm3] X_3042640_SNP [dm6]	C	T	1.222e^-4	0.644	INTRON kirre	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16945130	2R_16945130_SNP [dm3] 2R_21057625_SNP [dm6]	C	T	1.222e^-4	0.644	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12107000	2L_12107000_SNP [dm3] 2L_12107000_SNP [dm6]	G	T	1.228e^-4	0.645	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6 & 1 other
X	19531578	X_19531578_SNP [dm3] X_19637545_SNP [dm6]	C	T	1.244e^-4	0.647	UTR_5_PRIME e_y_3 INTRON e_y_3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	5655275	2R_5655275_SNP [dm3] 2R_9767770_SNP [dm6]	A	G	1.251e^-4	0.647	DOWNSTREAM CR44205 INTRON CG1688	TF binding site mE1_TFBS_inv
2R	12274473	2R_12274473_SNP [dm3] 2R_16386968_SNP [dm6]	A	T	1.252e^-4	0.647	INTRON Sema-2b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	12112873	2L_12112873_SNP [dm3] 2L_12112873_SNP [dm6]	G	T	1.253e^-4	0.647	DOWNSTREAM Phae2 INTERGENIC
3R	12846180	3R_12846180_SNP [dm3] 3R_17020458_SNP [dm6]	G	C	1.254e^-4	0.647	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18246639	3R_18246639_SNP [dm3] 3R_22420917_SNP [dm6]	A	T	1.255e^-4	0.647	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9201545	3R_9201545_SNP [dm3] 3R_13375823_SNP [dm6]	C	T	1.258e^-4	0.647	INTRON CG9813	transposable element FlyBase
2R	5676383	2R_5676383_SNP [dm3] 2R_9788878_SNP [dm6]	A	G	1.263e^-4	0.647	INTRON CG1688 EXON CR44208
2R	7324180	2R_7324180_MNP [dm3] 2R_11436675_MNP [dm6]	GTG	TCA	1.267e^-4	0.647	INTRON CG7777
3R	12836901	3R_12836901_SNP [dm3] 3R_17011179_SNP [dm6]	A	G	1.270e^-4	0.647	INTRON CG8907
2L	10352042	2L_10352042_SNP [dm3] 2L_10352042_SNP [dm6]	T	G	1.274e^-4	0.647	NON_SYNONYMOUS_CODING CG34367 INTRON CG34367
3R	24602440	3R_24602440_SNP [dm3] 3R_28776718_SNP [dm6]	A	G	1.275e^-4	0.647	UPSTREAM CR44952 INTERGENIC
2R	5783305	2R_5783305_SNP [dm3] 2R_9895800_SNP [dm6]	C	A	1.276e^-4	0.647	NON_SYNONYMOUS_CODING CG30007
2L	13534022	2L_13534022_SNP [dm3] 2L_13534022_SNP [dm6]	T	C	1.281e^-4	0.648	DOWNSTREAM CG33645 INTRON B4
2R	6762969	2R_6762969_SNP [dm3] 2R_10875464_SNP [dm6]	C	A	1.295e^-4	0.649	UPSTREAM nclb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9982642	2L_9982642_SNP [dm3] 2L_9982642_SNP [dm6]	C	G	1.295e^-4	0.649	INTERGENIC	regulatory region REDfly_CRMs
3L	14974004	3L_14974004_SNP [dm3] 3L_14980904_SNP [dm6]	G	A	1.297e^-4	0.649	NON_SYNONYMOUS_CODING CG3349
3L	2407399	3L_2407399_SNP [dm3] 3L_2407399_SNP [dm6]	G	C	1.298e^-4	0.649	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1741895	2L_1741895_SNP [dm3] 2L_1741895_SNP [dm6]	C	T	1.304e^-4	0.649	SYNONYMOUS_CODING CG17646	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16874510	3L_16874510_SNP [dm3] 3L_16881410_SNP [dm6]	T	A	1.304e^-4	0.649	INTRON Lmpt
3R	12832073	3R_12832073_SNP [dm3] 3R_17006351_SNP [dm6]	C	T	1.312e^-4	0.65	SYNONYMOUS_CODING Irc
3R	17524683	3R_17524683_SNP [dm3] 3R_21698961_SNP [dm6]	T	G	1.318e^-4	0.65	INTRON CG31176
3L	16657808	3L_16657808_SNP [dm3] 3L_16664708_SNP [dm6]	G	T	1.319e^-4	0.65	INTRON Galphaf
3L	16089705	3L_16089705_SNP [dm3] 3L_16096605_SNP [dm6]	A	T	1.321e^-4	0.65	DOWNSTREAM ClC-c INTRON CG13074	TF binding site mE1_TFBS_cad
2L	9982644	2L_9982644_SNP [dm3] 2L_9982644_SNP [dm6]	T	G	1.324e^-4	0.65	INTERGENIC	regulatory region REDfly_CRMs
3R	9201558	3R_9201558_SNP [dm3] 3R_13375836_SNP [dm6]	C	A	1.330e^-4	0.65	INTRON CG9813	transposable element FlyBase
2L	12761932	2L_12761932_SNP [dm3] 2L_12761932_SNP [dm6]	A	C	1.332e^-4	0.65	UPSTREAM CG15483 INTERGENIC
2L	5154896	2L_5154896_SNP [dm3] 2L_5154896_SNP [dm6]	T	C	1.335e^-4	0.65	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5783795	2R_5783795_SNP [dm3] 2R_9896290_SNP [dm6]	C	A	1.338e^-4	0.65	NON_SYNONYMOUS_CODING CG30007
2L	6277580	2L_6277580_SNP [dm3] 2L_6277580_SNP [dm6]	C	G	1.340e^-4	0.65	INTRON Ddr
3R	22489253	3R_22489253_SNP [dm3] 3R_26663531_SNP [dm6]	G	A	1.350e^-4	0.652	INTRON beat-VII
2L	19748698	2L_19748698_SNP [dm3] 2L_19748698_SNP [dm6]	G	A	1.353e^-4	0.652	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12111720	2L_12111720_SNP [dm3] 2L_12111720_SNP [dm6]	T	A	1.357e^-4	0.653	SYNONYMOUS_CODING Phae2	TF binding site mE1_TFBS_cad
2R	7406958	2R_7406958_SNP [dm3] 2R_11519453_SNP [dm6]	G	A	1.362e^-4	0.653	INTERGENIC
3R	11108752	3R_11108752_SNP [dm3] 3R_15283030_SNP [dm6]	G	C	1.367e^-4	0.654	INTRON Tm1
X	19110369	X_19110369_SNP [dm3] X_19216336_SNP [dm6]	A	G	1.377e^-4	0.657	SYNONYMOUS_CODING Muc18B
3L	16874533	3L_16874533_SNP [dm3] 3L_16881433_SNP [dm6]	T	G	1.396e^-4	0.66	INTRON Lmpt
2R	14806784	2R_14806784_DEL [dm3] 2R_18919279_DEL [dm6]	TAAACTGATGATTGTTAATT...	T	1.401e^-4	0.66	INTRON sano
3R	9277070	3R_9277070_SNP [dm3] 3R_13451348_SNP [dm6]	G	A	1.401e^-4	0.66	INTRON CG14372
2L	11409110	2L_11409110_SNP [dm3] 2L_11409110_SNP [dm6]	G	C	1.402e^-4	0.66	INTERGENIC	regulatory region REDfly_CRMs
3R	12841077	3R_12841077_SNP [dm3] 3R_17015355_SNP [dm6]	G	A	1.412e^-4	0.66	INTRON Pxd
X	2398981	X_2398981_SNP [dm3] X_2504948_SNP [dm6]	C	T	1.415e^-4	0.66	INTRON trol	TF binding site mE1_TFBS_cad
3L	3029339	3L_3029339_SNP [dm3] 3L_3029339_SNP [dm6]	C	T	1.415e^-4	0.66	INTERGENIC
2R	5881096	2R_5881096_SNP [dm3] 2R_9993591_SNP [dm6]	G	A	1.417e^-4	0.66	DOWNSTREAM Pka-R2 & 1 other INTERGENIC
2L	2823404	2L_2823404_DEL [dm3] 2L_2823404_DEL [dm6]	TGCTT	T	1.419e^-4	0.66	DOWNSTREAM CG3123 INTRON Duox
3L	11144446	3L_11144446_SNP [dm3] 3L_11151346_SNP [dm6]	C	T	1.422e^-4	0.66	UTR_5_PRIME CG32082 UPSTREAM CG6216
2R	7382873	2R_7382873_SNP [dm3] 2R_11495368_SNP [dm6]	A	G	1.422e^-4	0.66	INTRON inv
3L	11249168	3L_11249168_DEL [dm3] 3L_11256068_DEL [dm6]	AAACAA	A	1.438e^-4	0.665	UTR_3_PRIME scyl DOWNSTREAM scyl
3R	12846061	3R_12846061_SNP [dm3] 3R_17020339_SNP [dm6]	T	A	1.441e^-4	0.665	NON_SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22899207	3L_22899207_SNP [dm3] 3L_22906107_SNP [dm6]	T	C	1.442e^-4	0.665	DOWNSTREAM BoYb INTERGENIC	transposable element FlyBase
3L	11017597	3L_11017597_SNP [dm3] 3L_11024497_SNP [dm6]	T	C	1.448e^-4	0.666	NON_SYNONYMOUS_CODING Fad2
3L	16387574	3L_16387574_SNP [dm3] 3L_16394474_SNP [dm6]	A	T	1.458e^-4	0.669	UPSTREAM Grp INTRON CG44836	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10772108	3R_10772108_SNP [dm3] 3R_14946386_SNP [dm6]	T	C	1.468e^-4	0.671	INTERGENIC
2L	1024176	2L_1024176_SNP [dm3] 2L_1024176_SNP [dm6]	C	G	1.475e^-4	0.672	INTRON IA-2
X	2398982	X_2398982_SNP [dm3] X_2504949_SNP [dm6]	T	C	1.477e^-4	0.672	INTRON trol	TF binding site mE1_TFBS_cad
3L	11147873	3L_11147873_SNP [dm3] 3L_11154773_SNP [dm6]	A	T	1.481e^-4	0.672	INTRON CG32082
2L	3248312	2L_3248312_SNP [dm3] 2L_3248312_SNP [dm6]	A	G	1.483e^-4	0.672	INTERGENIC
X	2561041	X_2561041_SNP [dm3] X_2667008_SNP [dm6]	T	C	1.488e^-4	0.673	UPSTREAM sgg INTRON sgg
3R	17524697	3R_17524697_SNP [dm3] 3R_21698975_SNP [dm6]	A	T	1.496e^-4	0.673	INTRON CG31176
2R	5676685	2R_5676685_SNP [dm3] 2R_9789180_SNP [dm6]	G	C	1.500e^-4	0.673	DOWNSTREAM CR44208 INTRON CG1688 EXON CR44208
X	1054919	X_1054919_SNP [dm3] X_1160886_SNP [dm6]	T	G	1.508e^-4	0.673	INTRON eIF4E-7
2L	12106153	2L_12106153_SNP [dm3] 2L_12106153_SNP [dm6]	G	A	1.509e^-4	0.673	SYNONYMOUS_CODING Aats-thr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10024598	X_10024598_SNP [dm3] X_10130565_SNP [dm6]	T	A	1.512e^-4	0.673	INTRON CR44894 & 1 other
3L	22667335	3L_22667335_SNP [dm3] 3L_22674235_SNP [dm6]	T	A	1.513e^-4	0.673	INTRON CG14457
2L	18345146	2L_18345146_DEL [dm3] 2L_18345146_DEL [dm6]	ATA	A	1.514e^-4	0.673	INTRON Fas3	TF binding site mE1_TFBS_inv
2L	18560060	2L_18560060_INS [dm3] 2L_18560060_INS [dm6]	G	GTAT	1.517e^-4	0.673	INTRON Pde11
2L	14776802	2L_14776802_SNP [dm3] 2L_14776802_SNP [dm6]	A	G	1.531e^-4	0.677	INTERGENIC
3R	14388987	3R_14388987_SNP [dm3] 3R_18563265_SNP [dm6]	C	T	1.538e^-4	0.679	DOWNSTREAM CG43210 & 1 other INTERGENIC
2R	5506400	2R_5506400_SNP [dm3] 2R_9618895_SNP [dm6]	G	T	1.563e^-4	0.688	INTRON Mmp2
3R	13141615	3R_13141615_SNP [dm3] 3R_17315893_SNP [dm6]	G	T	1.574e^-4	0.691	INTERGENIC
3R	12852865	3R_12852865_SNP [dm3] 3R_17027143_SNP [dm6]	T	C	1.577e^-4	0.691	SPLICE_SITE_REGION Pxd INTRON Pxd
3R	12831559	3R_12831559_SNP [dm3] 3R_17005837_SNP [dm6]	G	C	1.592e^-4	0.692	NON_SYNONYMOUS_CODING Irc
3L	15614184	3L_15614184_SNP [dm3] 3L_15621084_SNP [dm6]	A	G	1.594e^-4	0.692	SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3L	18082791	3L_18082791_SNP [dm3] 3L_18089691_SNP [dm6]	G	C	1.601e^-4	0.692	INTRON CG13698
3R	12840070	3R_12840070_INS [dm3] 3R_17014348_INS [dm6]	A	AAA	1.601e^-4	0.692	UPSTREAM Pxd INTERGENIC
3L	11173865	3L_11173865_DEL [dm3] 3L_11180765_DEL [dm6]	AC	T	1.602e^-4	0.692	INTRON GlcAT-P
2R	7324140	2R_7324140_SNP [dm3] 2R_11436635_SNP [dm6]	A	T	1.602e^-4	0.692	INTRON CG7777
3L	16763732	3L_16763732_SNP [dm3] 3L_16770632_SNP [dm6]	G	C	1.628e^-4	0.696	INTRON Nrt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26484908	3R_26484908_SNP [dm3] 3R_30659186_SNP [dm6]	C	T	1.639e^-4	0.696	INTERGENIC
3L	17731644	3L_17731644_SNP [dm3] 3L_17738544_SNP [dm6]	A	T	1.640e^-4	0.696	INTRON Ccn
2R	6365027	2R_6365027_SNP [dm3] 2R_10477522_SNP [dm6]	G	A	1.641e^-4	0.696	UPSTREAM CR45134 INTRON whd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	7324175	2R_7324175_SNP [dm3] 2R_11436670_SNP [dm6]	A	T	1.641e^-4	0.696	INTRON CG7777
2R	5680247	2R_5680247_SNP [dm3] 2R_9792742_SNP [dm6]	A	G	1.648e^-4	0.696	UPSTREAM CG1698 INTRON CG1688
3R	11201716	3R_11201716_SNP [dm3] 3R_15375994_SNP [dm6]	G	A	1.648e^-4	0.696	INTRON Rbp
2R	14439882	2R_14439882_SNP [dm3] 2R_18552377_SNP [dm6]	T	C	1.652e^-4	0.696	INTERGENIC
2L	7659801	2L_7659801_SNP [dm3] 2L_7659801_SNP [dm6]	T	C	1.654e^-4	0.696	UPSTREAM Slob INTRON Slob	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4407908	2L_4407908_SNP [dm3] 2L_4407908_SNP [dm6]	A	G	1.654e^-4	0.696	SYNONYMOUS_CODING CG15431	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11606489	2R_11606489_DEL [dm3] 2R_15718984_DEL [dm6]	GAG	A	1.656e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11172076	2R_11172076_SNP [dm3] 2R_15284571_SNP [dm6]	C	T	1.658e^-4	0.696	INTRON Trpm
2R	13146361	2R_13146361_SNP [dm3] 2R_17258856_SNP [dm6]	C	G	1.661e^-4	0.696	UPSTREAM CG43108 INTRON mbl
2R	6439843	2R_6439843_SNP [dm3] 2R_10552338_SNP [dm6]	A	G	1.663e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	7324189	2R_7324189_MNP [dm3] 2R_11436684_MNP [dm6]	TTA	GAT	1.673e^-4	0.698	INTRON CG7777
2L	4646643	2L_4646643_SNP [dm3] 2L_4646643_SNP [dm6]	A	T	1.685e^-4	0.698	UPSTREAM CG43798 DOWNSTREAM CG15635 INTERGENIC
2R	8622821	2R_8622821_SNP [dm3] 2R_12735316_SNP [dm6]	T	A	1.685e^-4	0.698	INTRON CG42663
3R	26958950	3R_26958950_SNP [dm3] 3R_31133228_SNP [dm6]	G	C	1.687e^-4	0.698	DOWNSTREAM CR43458 INTERGENIC
2L	14764050	2L_14764050_SNP [dm3] 2L_14764050_SNP [dm6]	C	T	1.687e^-4	0.698	UTR_3_PRIME CSN1a
3R	17524721	3R_17524721_SNP [dm3] 3R_21698999_SNP [dm6]	T	A	1.697e^-4	0.701	INTRON CG31176
X	6453443	X_6453443_SNP [dm3] X_6559410_SNP [dm6]	C	T	1.704e^-4	0.701	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
3R	12846369	3R_12846369_SNP [dm3] 3R_17020647_SNP [dm6]	C	T	1.704e^-4	0.701	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16089692	3L_16089692_SNP [dm3] 3L_16096592_SNP [dm6]	T	C	1.710e^-4	0.702	SPLICE_SITE_REGION CG13074 SYNONYMOUS_CODING CG13074 DOWNSTREAM ClC-c	TF binding site mE1_TFBS_cad
X	10024603	X_10024603_DEL [dm3] X_10130570_DEL [dm6]	TT	T	1.716e^-4	0.703	INTRON CR44894 & 1 other
3R	14033595	3R_14033595_SNP [dm3] 3R_18207873_SNP [dm6]	G	T	1.721e^-4	0.703	UPSTREAM CG44158 INTRON CG7985
3R	12831902	3R_12831902_SNP [dm3] 3R_17006180_SNP [dm6]	A	G	1.723e^-4	0.703	SYNONYMOUS_CODING Irc
3R	5085234	3R_5085234_DEL [dm3] 3R_9259512_DEL [dm6]	ATA	A	1.729e^-4	0.703	INTRON CG8436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6489583	X_6489583_SNP [dm3] X_6595550_SNP [dm6]	C	A	1.736e^-4	0.705	SYNONYMOUS_CODING Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17524691	3R_17524691_SNP [dm3] 3R_21698969_SNP [dm6]	G	T	1.741e^-4	0.705	INTRON CG31176
X	12542111	X_12542111_SNP [dm3] X_12648078_SNP [dm6]	C	G	1.749e^-4	0.707	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	16945100	2R_16945100_SNP [dm3] 2R_21057595_SNP [dm6]	A	C	1.755e^-4	0.707	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	3961806	X_3961806_SNP [dm3] X_4067773_SNP [dm6]	C	T	1.757e^-4	0.707	INTERGENIC
3R	26484940	3R_26484940_SNP [dm3] 3R_30659218_SNP [dm6]	T	C	1.764e^-4	0.708	INTERGENIC
2R	17365037	2R_17365037_SNP [dm3] 2R_21477532_SNP [dm6]	C	G	1.769e^-4	0.708	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14846282	X_14846282_DEL [dm3] X_14952249_DEL [dm6]	ATATGTA	A	1.773e^-4	0.708	UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6307206	2R_6307206_SNP [dm3] 2R_10419701_SNP [dm6]	T	A	1.775e^-4	0.708	UTR_3_PRIME Prx2540-2 DOWNSTREAM CG11825	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6568861	2R_6568861_SNP [dm3] 2R_10681356_SNP [dm6]	T	G	1.779e^-4	0.708	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	20168663	3L_20168663_SNP [dm3] 3L_20175563_SNP [dm6]	G	A	1.781e^-4	0.708	INTRON CG42674
3R	12828143	3R_12828143_SNP [dm3] 3R_17002421_SNP [dm6]	T	C	1.797e^-4	0.709	UPSTREAM Irc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	19798048	2L_19798048_SNP [dm3] 2L_19798048_SNP [dm6]	T	C	1.806e^-4	0.709	INTRON sick
2L	19748711	2L_19748711_SNP [dm3] 2L_19748711_SNP [dm6]	A	G	1.807e^-4	0.709	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6277558	2L_6277558_SNP [dm3] 2L_6277558_SNP [dm6]	G	T	1.810e^-4	0.709	INTRON Ddr
X	6453439	X_6453439_SNP [dm3] X_6559406_SNP [dm6]	A	C	1.812e^-4	0.709	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
3R	12825326	3R_12825326_SNP [dm3] 3R_16999604_SNP [dm6]	A	G	1.816e^-4	0.709	DOWNSTREAM CG3534 INTRON CG16941
3R	12825329	3R_12825329_SNP [dm3] 3R_16999607_SNP [dm6]	T	G	1.816e^-4	0.709	DOWNSTREAM CG3534 INTRON CG16941
2R	5733928	2R_5733928_SNP [dm3] 2R_9846423_SNP [dm6]	C	A	1.817e^-4	0.709	START_GAINED Orc6 UTR_5_PRIME Orc6 DOWNSTREAM CG1667 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3R	12830892	3R_12830892_SNP [dm3] 3R_17005170_SNP [dm6]	G	A	1.819e^-4	0.709	NON_SYNONYMOUS_CODING Irc SPLICE_SITE_REGION Irc
3R	25355125	3R_25355125_SNP [dm3] 3R_29529403_SNP [dm6]	G	T	1.832e^-4	0.713	INTERGENIC
2R	6582884	2R_6582884_SNP [dm3] 2R_10695379_SNP [dm6]	T	A	1.842e^-4	0.715	INTRON stan
2R	6568854	2R_6568854_SNP [dm3] 2R_10681349_SNP [dm6]	T	A	1.850e^-4	0.717	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16090579	3R_16090579_SNP [dm3] 3R_20264857_SNP [dm6]	T	A	1.858e^-4	0.718	INTRON cic
X	8347969	X_8347969_DEL [dm3] X_8453936_DEL [dm6]	AAA	C	1.871e^-4	0.722	INTRON org-1
2R	5733815	2R_5733815_SNP [dm3] 2R_9846310_SNP [dm6]	A	C	1.877e^-4	0.723	DOWNSTREAM CG1667 & 1 other INTRON Orc6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	17524599	3R_17524599_SNP [dm3] 3R_21698877_SNP [dm6]	C	A	1.896e^-4	0.729	INTRON CG31176
2R	5732693	2R_5732693_SNP [dm3] 2R_9845188_SNP [dm6]	G	A	1.901e^-4	0.729	UTR_3_PRIME CG1667 DOWNSTREAM Orc6
2L	9982648	2L_9982648_SNP [dm3] 2L_9982648_SNP [dm6]	A	G	1.916e^-4	0.729	INTERGENIC	regulatory region REDfly_CRMs
2R	8604380	2R_8604380_SNP [dm3] 2R_12716875_SNP [dm6]	T	C	1.916e^-4	0.729	INTRON CG42663
3R	12851499	3R_12851499_SNP [dm3] 3R_17025777_SNP [dm6]	T	C	1.921e^-4	0.729	SYNONYMOUS_CODING Pxd
3R	13139468	3R_13139468_SNP [dm3] 3R_17313746_SNP [dm6]	A	T	1.923e^-4	0.729	INTERGENIC
2R	3001853	2R_3001853_SNP [dm3] 2R_7114348_SNP [dm6]	G	A	1.928e^-4	0.729	INTRON esn	TF binding site mE1_TFBS_chinmo
3R	16130038	3R_16130038_SNP [dm3] 3R_20304316_SNP [dm6]	G	A	1.930e^-4	0.729	SYNONYMOUS_CODING CG4367 DOWNSTREAM cic
2R	6568271	2R_6568271_SNP [dm3] 2R_10680766_SNP [dm6]	C	T	1.931e^-4	0.729	INTRON stan	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16874516	3L_16874516_SNP [dm3] 3L_16881416_SNP [dm6]	A	C	1.933e^-4	0.729	INTRON Lmpt
2L	21078632	2L_21078632_SNP [dm3] 2L_21078632_SNP [dm6]	T	C	1.936e^-4	0.729	INTRON tadr
3L	18081695	3L_18081695_SNP [dm3] 3L_18088595_SNP [dm6]	T	C	1.952e^-4	0.734	UTR_3_PRIME CG13698 DOWNSTREAM CG13698
3L	11142613	3L_11142613_SNP [dm3] 3L_11149513_SNP [dm6]	A	T	1.956e^-4	0.734	DOWNSTREAM CG6216 INTRON CG32082
2L	1747308	2L_1747308_SNP [dm3] 2L_1747308_SNP [dm6]	G	T	1.969e^-4	0.737	INTRON CG17646
3L	7454029	3L_7454029_SNP [dm3] 3L_7460929_SNP [dm6]	G	A	1.978e^-4	0.739	INTERGENIC
2R	5750137	2R_5750137_SNP [dm3] 2R_9862632_SNP [dm6]	C	T	1.983e^-4	0.739	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3258917	2R_3258917_SNP [dm3] 2R_7371412_SNP [dm6]	A	G	1.993e^-4	0.739	INTRON Dscam1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8352893	2R_8352893_SNP [dm3] 2R_12465388_SNP [dm6]	T	A	1.995e^-4	0.739	UTR_3_PRIME Lac DOWNSTREAM dgt5
X	19533012	X_19533012_SNP [dm3] X_19638979_SNP [dm6]	T	C	1.997e^-4	0.739	UTR_5_PRIME Rcd-1 UPSTREAM e_y_3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	9200382	3R_9200382_SNP [dm3] 3R_13374660_SNP [dm6]	G	T	1.998e^-4	0.739	NON_SYNONYMOUS_CODING CG9813	TF binding site BDTNP1_TFBS_dl
2R	9248567	2R_9248567_SNP [dm3] 2R_13361062_SNP [dm6]	A	T	2.004e^-4	0.739	DOWNSTREAM CR45312 INTERGENIC
2L	5880441	2L_5880441_SNP [dm3] 2L_5880441_SNP [dm6]	C	A	2.006e^-4	0.739	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	5719615	2R_5719615_SNP [dm3] 2R_9832110_SNP [dm6]	C	T	2.022e^-4	0.739	UPSTREAM hebe INTRON hebe
2L	2946282	2L_2946282_SNP [dm3] 2L_2946282_SNP [dm6]	G	T	2.025e^-4	0.739	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	2946319	2L_2946319_SNP [dm3] 2L_2946319_SNP [dm6]	G	A	2.025e^-4	0.739	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	8909098	X_8909098_SNP [dm3] X_9015065_SNP [dm6]	G	A	2.031e^-4	0.739	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	10910384	3L_10910384_SNP [dm3] 3L_10917284_SNP [dm6]	T	G	2.034e^-4	0.739	INTERGENIC
2R	5882075	2R_5882075_SNP [dm3] 2R_9994570_SNP [dm6]	C	T	2.035e^-4	0.739	UTR_3_PRIME Pka-R2
3L	4963461	3L_4963461_SNP [dm3] 3L_4963461_SNP [dm6]	G	C	2.035e^-4	0.739	INTRON Con
3R	27111637	3R_27111637_SNP [dm3] 3R_31285915_SNP [dm6]	A	G	2.042e^-4	0.739	INTERGENIC
2R	14439010	2R_14439010_SNP [dm3] 2R_18551505_SNP [dm6]	C	A	2.053e^-4	0.739	INTERGENIC
3R	26484930	3R_26484930_SNP [dm3] 3R_30659208_SNP [dm6]	A	G	2.053e^-4	0.739	INTERGENIC
2R	14985992	2R_14985992_SNP [dm3] 2R_19098487_SNP [dm6]	G	C	2.057e^-4	0.739	INTRON 5-HT1A
2R	6439847	2R_6439847_SNP [dm3] 2R_10552342_SNP [dm6]	C	T	2.059e^-4	0.739	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	19532657	X_19532657_SNP [dm3] X_19638624_SNP [dm6]	C	T	2.062e^-4	0.739	UPSTREAM Rcd-1 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	4867834	X_4867834_SNP [dm3] X_4973801_SNP [dm6]	A	C	2.064e^-4	0.739	INTRON CR44833
2R	6369226	2R_6369226_SNP [dm3] 2R_10481721_SNP [dm6]	G	T	2.075e^-4	0.739	UTR_3_PRIME CG17765 DOWNSTREAM lola & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3R	12831108	3R_12831108_SNP [dm3] 3R_17005386_SNP [dm6]	A	T	2.076e^-4	0.739	INTRON Irc
2R	16945112	2R_16945112_SNP [dm3] 2R_21057607_SNP [dm6]	G	A	2.076e^-4	0.739	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14751374	2L_14751374_SNP [dm3] 2L_14751374_SNP [dm6]	A	G	2.081e^-4	0.739	INTERGENIC
2R	12995101	2R_12995101_SNP [dm3] 2R_17107596_SNP [dm6]	A	T	2.083e^-4	0.739	DOWNSTREAM CG30456 INTERGENIC
2R	18662937	2R_18662937_SNP [dm3] 2R_22775432_SNP [dm6]	G	A	2.084e^-4	0.739	INTRON CG42260
3L	16089699	3L_16089699_SNP [dm3] 3L_16096599_SNP [dm6]	A	G	2.091e^-4	0.74	SPLICE_SITE_REGION CG13074 DOWNSTREAM ClC-c INTRON CG13074	TF binding site mE1_TFBS_cad
3R	12846162	3R_12846162_SNP [dm3] 3R_17020440_SNP [dm6]	T	C	2.094e^-4	0.74	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17365034	2R_17365034_SNP [dm3] 2R_21477529_SNP [dm6]	A	T	2.106e^-4	0.74	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11500310	2L_11500310_SNP [dm3] 2L_11500310_SNP [dm6]	T	C	2.107e^-4	0.74	INTERGENIC
X	19529052	X_19529052_SNP [dm3] X_19635019_SNP [dm6]	G	T	2.109e^-4	0.74	SYNONYMOUS_CODING e_y_3	TF binding site mE1_TFBS_chinmo
2R	7324173	2R_7324173_SNP [dm3] 2R_11436668_SNP [dm6]	C	T	2.110e^-4	0.74	INTRON CG7777
2R	6368704	2R_6368704_SNP [dm3] 2R_10481199_SNP [dm6]	A	T	2.114e^-4	0.74	DOWNSTREAM lola & 1 other INTRON CG17765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	15613988	3L_15613988_SNP [dm3] 3L_15620888_SNP [dm6]	A	G	2.127e^-4	0.741	NON_SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	6762060	3R_6762060_SNP [dm3] 3R_10936338_SNP [dm6]	G	C	2.128e^-4	0.741	INTERGENIC
2L	12106971	2L_12106971_SNP [dm3] 2L_12106971_SNP [dm6]	G	T	2.133e^-4	0.741	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6 & 1 other
2L	2946257	2L_2946257_SNP [dm3] 2L_2946257_SNP [dm6]	T	A	2.133e^-4	0.741	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad
3L	15613788	3L_15613788_SNP [dm3] 3L_15620688_SNP [dm6]	C	T	2.142e^-4	0.743	SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	11478767	2L_11478767_SNP [dm3] 2L_11478767_SNP [dm6]	T	C	2.154e^-4	0.745	INTERGENIC
3R	9236186	3R_9236186_SNP [dm3] 3R_13410464_SNP [dm6]	C	A	2.157e^-4	0.745	INTRON yellow-e	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8233821	3L_8233821_SNP [dm3] 3L_8240721_SNP [dm6]	C	T	2.160e^-4	0.745	UPSTREAM Dscam4 & 1 other INTRON Dscam4
2L	16967726	2L_16967726_SNP [dm3] 2L_16967726_SNP [dm6]	T	G	2.171e^-4	0.747	INTERGENIC
2R	5750236	2R_5750236_SNP [dm3] 2R_9862731_SNP [dm6]	C	A	2.175e^-4	0.747	UPSTREAM CG30010 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8432726	X_8432726_SNP [dm3] X_8538693_SNP [dm6]	C	T	2.196e^-4	0.752	INTRON Nrg
2R	7456916	2R_7456916_INS [dm3] 2R_11569411_INS [dm6]	G	GG	2.201e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20212558	2R_20212558_SNP [dm3] 2R_24325035_SNP [dm6]	T	A	2.203e^-4	0.752	EXON CR44810
3L	5338187	3L_5338187_SNP [dm3] 3L_5345087_SNP [dm6]	A	C	2.206e^-4	0.752	NON_SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13139413	3R_13139413_INS [dm3] 3R_17313691_INS [dm6]	T	GAGATGCA	2.219e^-4	0.753	INTERGENIC
2L	12100737	2L_12100737_SNP [dm3] 2L_12100737_SNP [dm6]	T	G	2.222e^-4	0.753	UTR_3_PRIME Ced-12 DOWNSTREAM Patsas
2R	5735871	2R_5735871_SNP [dm3] 2R_9848366_SNP [dm6]	G	T	2.227e^-4	0.753	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9636250	2L_9636250_SNP [dm3] 2L_9636250_SNP [dm6]	A	C	2.230e^-4	0.753	INTRON Apoltp
3R	18246634	3R_18246634_SNP [dm3] 3R_22420912_SNP [dm6]	G	A	2.231e^-4	0.753	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14857949	2L_14857949_SNP [dm3] 2L_14857949_SNP [dm6]	A	G	2.235e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	7987952	X_7987952_SNP [dm3] X_8093919_SNP [dm6]	T	C	2.241e^-4	0.753	UTR_5_PRIME Ubc-E2H DOWNSTREAM CG2258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
2L	3684601	2L_3684601_SNP [dm3] 2L_3684601_SNP [dm6]	C	A	2.243e^-4	0.753	SYNONYMOUS_CODING CG34340	TF binding site mE1_TFBS_chinmo
3R	20316759	3R_20316759_SNP [dm3] 3R_24491037_SNP [dm6]	A	C	2.248e^-4	0.753	UTR_3_PRIME nAChRalpha2
3R	13139415	3R_13139415_SNP [dm3] 3R_17313693_SNP [dm6]	C	T	2.250e^-4	0.753	INTERGENIC
3R	15160238	3R_15160238_SNP [dm3] 3R_19334516_SNP [dm6]	G	T	2.255e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2R	6130122	2R_6130122_SNP [dm3] 2R_10242617_SNP [dm6]	T	A	2.259e^-4	0.754	INTRON Hdc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17795917	3R_17795917_SNP [dm3] 3R_21970195_SNP [dm6]	C	T	2.273e^-4	0.754	INTRON Eip93F
3L	7265202	3L_7265202_SNP [dm3] 3L_7272102_SNP [dm6]	G	A	2.273e^-4	0.754	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
3R	18246679	3R_18246679_SNP [dm3] 3R_22420957_SNP [dm6]	G	A	2.275e^-4	0.754	UTR_5_PRIME Nop56 UPSTREAM mats	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16330371	3L_16330371_SNP [dm3] 3L_16337271_SNP [dm6]	G	A	2.277e^-4	0.754	INTERGENIC
2R	6359631	2R_6359631_SNP [dm3] 2R_10472126_SNP [dm6]	A	G	2.281e^-4	0.755	SYNONYMOUS_CODING whd	TF binding site mE1_TFBS_inv
2L	14788198	2L_14788198_SNP [dm3] 2L_14788198_SNP [dm6]	C	T	2.289e^-4	0.756	INTERGENIC
2L	9982650	2L_9982650_SNP [dm3] 2L_9982650_SNP [dm6]	C	T	2.313e^-4	0.758	INTERGENIC	regulatory region REDfly_CRMs
2R	5742476	2R_5742476_SNP [dm3] 2R_9854971_SNP [dm6]	T	C	2.314e^-4	0.758	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14053675	3L_14053675_SNP [dm3] 3L_14060575_SNP [dm6]	A	G	2.314e^-4	0.758	INTRON CG32138
3R	24602401	3R_24602401_SNP [dm3] 3R_28776679_SNP [dm6]	C	T	2.319e^-4	0.758	UPSTREAM CR44952 INTERGENIC
2R	8758954	2R_8758954_SNP [dm3] 2R_12871449_SNP [dm6]	G	C	2.325e^-4	0.758	UTR_3_PRIME bic DOWNSTREAM bic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	20006606	3R_20006606_SNP [dm3] 3R_24180884_SNP [dm6]	C	T	2.328e^-4	0.758	UTR_3_PRIME CG13606 INTRON CG13606
X	18998508	X_18998508_SNP [dm3] X_19104475_SNP [dm6]	A	G	2.342e^-4	0.758	INTERGENIC
3R	12849809	3R_12849809_SNP [dm3] 3R_17024087_SNP [dm6]	A	G	2.346e^-4	0.758	INTRON Pxd	TF binding site mE1_TFBS_inv
X	1070680	X_1070680_SNP [dm3] X_1176647_SNP [dm6]	A	G	2.349e^-4	0.758	UPSTREAM CG11384 INTERGENIC
X	1070798	X_1070798_SNP [dm3] X_1176765_SNP [dm6]	G	A	2.349e^-4	0.758	UPSTREAM CG11384 INTERGENIC
X	12505128	X_12505128_SNP [dm3] X_12611095_SNP [dm6]	G	A	2.351e^-4	0.758	SYNONYMOUS_CODING CG1463 UPSTREAM CG2543	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	14388983	3R_14388983_SNP [dm3] 3R_18563261_SNP [dm6]	T	A	2.355e^-4	0.758	INTERGENIC
2L	556884	2L_556884_SNP [dm3] 2L_556884_SNP [dm6]	C	T	2.358e^-4	0.758	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	12111375	2L_12111375_SNP [dm3] 2L_12111375_SNP [dm6]	T	C	2.361e^-4	0.758	SYNONYMOUS_CODING Phae2 DOWNSTREAM Phae1	TF binding site mE1_TFBS_cad
3R	20377526	3R_20377526_SNP [dm3] 3R_24551804_SNP [dm6]	T	C	2.361e^-4	0.758	SYNONYMOUS_CODING Esyt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5506375	2R_5506375_INS [dm3] 2R_9618870_INS [dm6]	A	ACAAGTAAATA...	2.361e^-4	0.758	INTRON Mmp2
2R	5311801	2R_5311801_SNP [dm3] 2R_9424296_SNP [dm6]	G	C	2.366e^-4	0.758	UPSTREAM CG13955 INTRON prel	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24450947	3R_24450947_SNP [dm3] 3R_28625225_SNP [dm6]	A	T	2.370e^-4	0.758	INTRON CG10011
X	19531463	X_19531463_SNP [dm3] X_19637430_SNP [dm6]	G	T	2.373e^-4	0.758	UTR_5_PRIME e_y_3 INTRON e_y_3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	8050233	2L_8050233_SNP [dm3] 2L_8050233_SNP [dm6]	T	G	2.393e^-4	0.761	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14802447	2L_14802447_SNP [dm3] 2L_14802447_SNP [dm6]	A	G	2.395e^-4	0.761	NON_SYNONYMOUS_CODING CG33308
2R	11943429	2R_11943429_SNP [dm3] 2R_16055924_SNP [dm6]	C	G	2.395e^-4	0.761	INTRON CG8405
3R	26120849	3R_26120849_MNP [dm3] 3R_30295127_MNP [dm6]	TTA	AAT	2.398e^-4	0.761	INTRON hdc
2R	8623323	2R_8623323_SNP [dm3] 2R_12735818_SNP [dm6]	C	T	2.423e^-4	0.765	INTRON CG42663	TF binding site mE1_TFBS_chinmo
2L	955916	2L_955916_SNP [dm3] 2L_955916_SNP [dm6]	A	T	2.431e^-4	0.765	INTRON CG4341
3R	24048406	3R_24048406_SNP [dm3] 3R_28222684_SNP [dm6]	C	T	2.432e^-4	0.765	INTRON CG34354
2R	5506304	2R_5506304_SNP [dm3] 2R_9618799_SNP [dm6]	T	C	2.434e^-4	0.765	INTRON Mmp2
X	4415031	X_4415031_SNP [dm3] X_4520998_SNP [dm6]	C	T	2.435e^-4	0.765	INTRON CR32773
X	3236292	X_3236292_INS [dm3] X_3342259_INS [dm6]	G	GTG	2.450e^-4	0.765	UTR_3_PRIME dnc INTRON CR44886
2L	2132604	2L_2132604_SNP [dm3] 2L_2132604_SNP [dm6]	G	T	2.452e^-4	0.765	INTRON GlyP
3R	7995462	3R_7995462_INS [dm3] 3R_12169740_INS [dm6]	A	AA	2.453e^-4	0.765	INTERGENIC
3R	17524692	3R_17524692_SNP [dm3] 3R_21698970_SNP [dm6]	A	C	2.457e^-4	0.765	INTRON CG31176
3R	12844518	3R_12844518_SNP [dm3] 3R_17018796_SNP [dm6]	G	T	2.461e^-4	0.765	UTR_3_PRIME AdSL INTRON Pxd
2L	4350580	2L_4350580_INS [dm3] 2L_4350580_INS [dm6]	G	GG	2.472e^-4	0.765	UPSTREAM CR44700 DOWNSTREAM CR44699 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5699878	2R_5699878_SNP [dm3] 2R_9812373_SNP [dm6]	T	A	2.479e^-4	0.765	INTRON CG1648
2R	5676397	2R_5676397_SNP [dm3] 2R_9788892_SNP [dm6]	T	A	2.479e^-4	0.765	INTRON CG1688 EXON CR44208
2L	13062800	2L_13062800_SNP [dm3] 2L_13062800_SNP [dm6]	T	C	2.480e^-4	0.765	INTERGENIC
2L	14759991	2L_14759991_SNP [dm3] 2L_14759991_SNP [dm6]	A	G	2.481e^-4	0.765	UPSTREAM CG4691 INTERGENIC
2L	10007319	2L_10007319_SNP [dm3] 2L_10007319_SNP [dm6]	G	C	2.482e^-4	0.765	SYNONYMOUS_CODING CG4747
2R	8622642	2R_8622642_SNP [dm3] 2R_12735137_SNP [dm6]	T	C	2.482e^-4	0.765	INTRON CG42663
X	7798547	X_7798547_SNP [dm3] X_7904514_SNP [dm6]	T	A	2.485e^-4	0.765	UTR_3_PRIME dpr14 DOWNSTREAM bys
X	751473	X_751473_DEL [dm3] X_857440_DEL [dm6]	GG	G	2.495e^-4	0.765	INTRON CG43867	TF binding site mE1_TFBS_chinmo
2R	440282	2R_440282_SNP [dm3] 2R_4552777_SNP [dm6]	G	A	2.500e^-4	0.765	INTRON Stlk	transposable element FlyBase
2L	14814717	2L_14814717_SNP [dm3] 2L_14814717_SNP [dm6]	T	C	2.503e^-4	0.765	INTERGENIC
2R	8266304	2R_8266304_SNP [dm3] 2R_12378799_SNP [dm6]	G	A	2.515e^-4	0.765	NON_SYNONYMOUS_CODING Cpr49Ab DOWNSTREAM CG13155	TF binding site mE1_TFBS_cad
3L	18145790	3L_18145790_SNP [dm3] 3L_18152690_SNP [dm6]	T	C	2.519e^-4	0.765	INTRON CG7330
3L	11017800	3L_11017800_SNP [dm3] 3L_11024700_SNP [dm6]	G	A	2.522e^-4	0.765	UTR_3_PRIME Fad2 UPSTREAM CG32079	TF binding site BDTNP1_TFBS_twi
2R	5506340	2R_5506340_SNP [dm3] 2R_9618835_SNP [dm6]	A	G	2.530e^-4	0.765	INTRON Mmp2
2R	5708056	2R_5708056_SNP [dm3] 2R_9820551_SNP [dm6]	T	A	2.532e^-4	0.765	UPSTREAM CG34033 & 1 other DOWNSTREAM CG30001 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	6581316	2R_6581316_SNP [dm3] 2R_10693811_SNP [dm6]	G	A	2.538e^-4	0.765	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	11500295	2L_11500295_SNP [dm3] 2L_11500295_SNP [dm6]	T	C	2.541e^-4	0.765	INTERGENIC
3L	10910269	3L_10910269_SNP [dm3] 3L_10917169_SNP [dm6]	A	C	2.541e^-4	0.765	INTERGENIC
X	6450623	X_6450623_SNP [dm3] X_6556590_SNP [dm6]	A	C	2.545e^-4	0.765	SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	24046052	3R_24046052_SNP [dm3] 3R_28220330_SNP [dm6]	G	A	2.546e^-4	0.765	INTRON CG34354
3R	12874161	3R_12874161_SNP [dm3] 3R_17048439_SNP [dm6]	C	A	2.549e^-4	0.765	DOWNSTREAM Patr-1 INTERGENIC	TF binding site mE1_TFBS_kn
2R	7450523	2R_7450523_SNP [dm3] 2R_11563018_SNP [dm6]	C	G	2.550e^-4	0.765	INTERGENIC
2R	2955293	2R_2955293_SNP [dm3] 2R_7067788_SNP [dm6]	C	T	2.551e^-4	0.765	UPSTREAM CG12836 INTERGENIC
3L	11354753	3L_11354753_SNP [dm3] 3L_11361653_SNP [dm6]	C	T	2.552e^-4	0.765	DOWNSTREAM CG6163 INTERGENIC
X	5491842	X_5491842_SNP [dm3] X_5597809_SNP [dm6]	T	A	2.562e^-4	0.766	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12022962	3L_12022962_SNP [dm3] 3L_12029862_SNP [dm6]	T	C	2.565e^-4	0.766	INTRON rols
3R	18246635	3R_18246635_SNP [dm3] 3R_22420913_SNP [dm6]	C	T	2.568e^-4	0.766	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17252403	2R_17252403_SNP [dm3] 2R_21364898_SNP [dm6]	A	G	2.578e^-4	0.766	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16945826	2R_16945826_SNP [dm3] 2R_21058321_SNP [dm6]	C	T	2.581e^-4	0.766	INTRON cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	26700986	3R_26700986_SNP [dm3] 3R_30875264_SNP [dm6]	A	G	2.582e^-4	0.766	NON_SYNONYMOUS_CODING CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7486678	2R_7486678_SNP [dm3] 2R_11599173_SNP [dm6]	A	G	2.585e^-4	0.766	INTRON tou	TF binding site BDTNP1_TFBS_dl
3L	16451226	3L_16451226_SNP [dm3] 3L_16458126_SNP [dm6]	C	T	2.589e^-4	0.766	INTRON CG33158
2R	17370727	2R_17370727_SNP [dm3] 2R_21483222_SNP [dm6]	T	A	2.599e^-4	0.767	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14842146	X_14842146_DEL [dm3] X_14948113_DEL [dm6]	CC	C	2.599e^-4	0.767	INTRON pdgy	TF binding site mE1_TFBS_HSA
3R	12857105	3R_12857105_SNP [dm3] 3R_17031383_SNP [dm6]	G	T	2.620e^-4	0.768	UPSTREAM CG31268 DOWNSTREAM CG5225 INTERGENIC
2L	12111792	2L_12111792_SNP [dm3] 2L_12111792_SNP [dm6]	C	T	2.621e^-4	0.768	SYNONYMOUS_CODING Phae2	TF binding site mE1_TFBS_cad
3R	12849821	3R_12849821_SNP [dm3] 3R_17024099_SNP [dm6]	A	T	2.621e^-4	0.768	INTRON Pxd	TF binding site mE1_TFBS_inv
X	8432724	X_8432724_SNP [dm3] X_8538691_SNP [dm6]	T	C	2.623e^-4	0.768	INTRON Nrg
2L	19405969	2L_19405969_SNP [dm3] 2L_19405969_SNP [dm6]	G	A	2.634e^-4	0.768	INTRON Pax	TF binding site mE1_TFBS_Kr
2R	440283	2R_440283_SNP [dm3] 2R_4552778_SNP [dm6]	T	A	2.641e^-4	0.768	INTRON Stlk	transposable element FlyBase
2R	2607555	2R_2607555_SNP [dm3] 2R_6720050_SNP [dm6]	G	A	2.643e^-4	0.768	UPSTREAM Zip42C.2 INTERGENIC
2L	18347862	2L_18347862_SNP [dm3] 2L_18347862_SNP [dm6]	G	T	2.654e^-4	0.768	INTRON Fas3
2L	14764041	2L_14764041_SNP [dm3] 2L_14764041_SNP [dm6]	T	C	2.657e^-4	0.768	UTR_3_PRIME CSN1a
3R	16131606	3R_16131606_SNP [dm3] 3R_20305884_SNP [dm6]	A	T	2.659e^-4	0.768	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
3R	12831819	3R_12831819_SNP [dm3] 3R_17006097_SNP [dm6]	T	C	2.667e^-4	0.768	SPLICE_SITE_REGION Irc INTRON Irc
3L	5404724	3L_5404724_SNP [dm3] 3L_5411624_SNP [dm6]	T	G	2.668e^-4	0.768	INTERGENIC
X	19532942	X_19532942_SNP [dm3] X_19638909_SNP [dm6]	C	A	2.679e^-4	0.768	UTR_5_PRIME Rcd-1 UPSTREAM e_y_3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	9674910	3L_9674910_SNP [dm3] 3L_9681810_SNP [dm6]	G	A	2.682e^-4	0.768	DOWNSTREAM CG16717 INTRON alphaTub67C	TF binding site mE1_TFBS_cad
2R	8622854	2R_8622854_SNP [dm3] 2R_12735349_SNP [dm6]	A	G	2.682e^-4	0.768	INTRON CG42663
2L	10864924	2L_10864924_SNP [dm3] 2L_10864924_SNP [dm6]	T	C	2.687e^-4	0.768	UPSTREAM CR43807 INTERGENIC
2L	11151164	2L_11151164_SNP [dm3] 2L_11151164_SNP [dm6]	C	T	2.690e^-4	0.768	DOWNSTREAM CG6287 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	18929035	X_18929035_SNP [dm3] X_19035002_SNP [dm6]	T	A	2.692e^-4	0.768	INTERGENIC
X	18929036	X_18929036_SNP [dm3] X_19035003_SNP [dm6]	T	C	2.692e^-4	0.768	INTERGENIC
2R	14438957	2R_14438957_SNP [dm3] 2R_18551452_SNP [dm6]	G	A	2.703e^-4	0.768	INTERGENIC
X	2457025	X_2457025_SNP [dm3] X_2562992_SNP [dm6]	G	T	2.703e^-4	0.768	INTRON Pdfr
2R	8593353	2R_8593353_SNP [dm3] 2R_12705848_SNP [dm6]	T	C	2.707e^-4	0.768	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7457657	2R_7457657_SNP [dm3] 2R_11570152_SNP [dm6]	A	G	2.707e^-4	0.768	INTERGENIC
X	5818542	X_5818542_SNP [dm3] X_5924509_SNP [dm6]	T	C	2.714e^-4	0.768	INTRON CG3726
2L	3669691	2L_3669691_SNP [dm3] 2L_3669691_SNP [dm6]	G	C	2.714e^-4	0.768	NON_SYNONYMOUS_CODING Sfp24Bb UPSTREAM CG42463 DOWNSTREAM Sfp24Bc INTRON CG34340
2R	5731484	2R_5731484_SNP [dm3] 2R_9843979_SNP [dm6]	A	G	2.716e^-4	0.768	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	11409075	2L_11409075_SNP [dm3] 2L_11409075_SNP [dm6]	A	G	2.716e^-4	0.768	INTERGENIC	regulatory region REDfly_CRMs
X	9566420	X_9566420_SNP [dm3] X_9672387_SNP [dm6]	G	A	2.719e^-4	0.768	INTRON nej	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	8178705	X_8178705_SNP [dm3] X_8284672_SNP [dm6]	T	G	2.727e^-4	0.768	INTRON nAChRalpha3
2L	14791057	2L_14791057_SNP [dm3] 2L_14791057_SNP [dm6]	G	A	2.728e^-4	0.768	INTERGENIC
3R	9210289	3R_9210289_SNP [dm3] 3R_13384567_SNP [dm6]	G	A	2.740e^-4	0.771	SYNONYMOUS_CODING Droj2
3L	9050234	3L_9050234_INS [dm3] 3L_9057134_INS [dm6]	A	ATAA	2.754e^-4	0.771	INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	5673026	2R_5673026_SNP [dm3] 2R_9785521_SNP [dm6]	C	T	2.773e^-4	0.771	INTRON CG1688
3L	22348685	3L_22348685_SNP [dm3] 3L_22355585_SNP [dm6]	T	C	2.776e^-4	0.771	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	19001861	3R_19001861_INS [dm3] 3R_23176139_INS [dm6]	A	AA	2.780e^-4	0.771	INTRON Irk1
X	18383309	X_18383309_SNP [dm3] X_18489276_SNP [dm6]	A	G	2.781e^-4	0.771	INTRON CG15046	TF binding site mE1_TFBS_chinmo
3L	12980676	3L_12980676_SNP [dm3] 3L_12987576_SNP [dm6]	T	C	2.783e^-4	0.771	INTERGENIC
X	3210653	X_3210653_SNP [dm3] X_3316620_SNP [dm6]	T	G	2.793e^-4	0.771	UPSTREAM CG10793 INTRON dnc & 1 other
2L	14773742	2L_14773742_SNP [dm3] 2L_14773742_SNP [dm6]	C	T	2.796e^-4	0.771	DOWNSTREAM CG4650 INTERGENIC
2L	14790055	2L_14790055_SNP [dm3] 2L_14790055_SNP [dm6]	G	T	2.796e^-4	0.771	INTERGENIC
2L	10034884	2L_10034884_SNP [dm3] 2L_10034884_SNP [dm6]	G	T	2.798e^-4	0.771	INTRON obst-B
X	16056095	X_16056095_SNP [dm3] X_16162062_SNP [dm6]	T	C	2.803e^-4	0.771	INTERGENIC
3R	16372135	3R_16372135_SNP [dm3] 3R_20546413_SNP [dm6]	G	T	2.811e^-4	0.771	INTRON Stat92E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17524689	3R_17524689_SNP [dm3] 3R_21698967_SNP [dm6]	T	A	2.814e^-4	0.771	INTRON CG31176
3L	9396429	3L_9396429_SNP [dm3] 3L_9403329_SNP [dm6]	A	G	2.817e^-4	0.771	UPSTREAM eIF-4E INTERGENIC
3R	11008881	3R_11008881_SNP [dm3] 3R_15183159_SNP [dm6]	T	A	2.818e^-4	0.771	INTRON Gyc88E
2L	8994478	2L_8994478_SNP [dm3] 2L_8994478_SNP [dm6]	G	A	2.819e^-4	0.771	NON_SYNONYMOUS_CODING CG17906 UTR_3_PRIME alien DOWNSTREAM CG9555 & 1 other	TF binding site mE1_TFBS_sens
X	7359184	X_7359184_SNP [dm3] X_7465151_SNP [dm6]	C	T	2.820e^-4	0.771	INTERGENIC
2L	2946333	2L_2946333_SNP [dm3] 2L_2946333_SNP [dm6]	C	A	2.829e^-4	0.771	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	8917698	X_8917698_SNP [dm3] X_9023665_SNP [dm6]	C	T	2.838e^-4	0.771	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8622175	2R_8622175_SNP [dm3] 2R_12734670_SNP [dm6]	C	T	2.846e^-4	0.771	INTRON CG42663
X	15313044	X_15313044_SNP [dm3] X_15419011_SNP [dm6]	G	A	2.847e^-4	0.771	INTRON Cngl
3R	16372140	3R_16372140_SNP [dm3] 3R_20546418_SNP [dm6]	G	C	2.848e^-4	0.771	INTRON Stat92E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12847102	3R_12847102_SNP [dm3] 3R_17021380_SNP [dm6]	G	A	2.859e^-4	0.771	UPSTREAM AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12843574	3R_12843574_INS [dm3] 3R_17017852_INS [dm6]	G	GTAAATAG	2.860e^-4	0.771	DOWNSTREAM AdSL INTRON Pxd
3R	19987359	3R_19987359_SNP [dm3] 3R_24161637_SNP [dm6]	G	C	2.863e^-4	0.771	UPSTREAM CG6182 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17625813	2R_17625813_SNP [dm3] 2R_21738308_SNP [dm6]	G	T	2.867e^-4	0.771	INTERGENIC
2L	19798072	2L_19798072_SNP [dm3] 2L_19798072_SNP [dm6]	A	G	2.867e^-4	0.771	INTRON sick
X	7987732	X_7987732_SNP [dm3] X_8093699_SNP [dm6]	A	G	2.888e^-4	0.771	DOWNSTREAM CG2258 INTRON Ubc-E2H	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	8350845	2R_8350845_SNP [dm3] 2R_12463340_SNP [dm6]	G	T	2.890e^-4	0.771	INTRON Lac	TF binding site BDTNP1_TFBS_dl
2R	17427609	2R_17427609_SNP [dm3] 2R_21540104_SNP [dm6]	T	G	2.894e^-4	0.771	NON_SYNONYMOUS_CODING CG30283 UPSTREAM CG33226 INTRON Egfr	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	20354566	3R_20354566_SNP [dm3] 3R_24528844_SNP [dm6]	G	C	2.898e^-4	0.771	SYNONYMOUS_CODING CG6607 DOWNSTREAM CG13623	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7823154	3L_7823154_SNP [dm3] 3L_7830054_SNP [dm6]	A	G	2.902e^-4	0.771	INTRON Pdp1
2L	9389418	2L_9389418_SNP [dm3] 2L_9389418_SNP [dm6]	C	T	2.903e^-4	0.771	INTRON Shawl & 1 other
2R	5506342	2R_5506342_SNP [dm3] 2R_9618837_SNP [dm6]	G	A	2.911e^-4	0.771	INTRON Mmp2
3R	9651505	3R_9651505_SNP [dm3] 3R_13825783_SNP [dm6]	T	C	2.913e^-4	0.771	INTERGENIC
2L	10833238	2L_10833238_SNP [dm3] 2L_10833238_SNP [dm6]	T	A	2.913e^-4	0.771	INTRON Nos
2L	9636262	2L_9636262_SNP [dm3] 2L_9636262_SNP [dm6]	A	C	2.916e^-4	0.771	INTRON Apoltp
2R	7112718	2R_7112718_SNP [dm3] 2R_11225213_SNP [dm6]	G	A	2.918e^-4	0.771	SYNONYMOUS_CODING CG7737	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5719613	2R_5719613_SNP [dm3] 2R_9832108_SNP [dm6]	A	G	2.921e^-4	0.771	UPSTREAM hebe INTRON hebe
3L	16311612	3L_16311612_SNP [dm3] 3L_16318512_SNP [dm6]	C	A	2.922e^-4	0.771	UTR_3_PRIME Nplp3 UPSTREAM CR45663 DOWNSTREAM CG13041 & 1 other
2R	5506303	2R_5506303_SNP [dm3] 2R_9618798_SNP [dm6]	G	A	2.926e^-4	0.771	INTRON Mmp2
3R	19032393	3R_19032393_SNP [dm3] 3R_23206671_SNP [dm6]	A	G	2.927e^-4	0.771	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	12070053	3L_12070053_SNP [dm3] 3L_12076953_SNP [dm6]	G	A	2.929e^-4	0.771	INTRON Sema-5c	TF binding site BDTNP1_TFBS_twi
2R	16944621	2R_16944621_SNP [dm3] 2R_21057116_SNP [dm6]	G	A	2.930e^-4	0.771	UTR_5_PRIME shg UPSTREAM cpa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	10510171	3R_10510171_SNP [dm3] 3R_14684449_SNP [dm6]	G	A	2.939e^-4	0.771	INTRON Meltrin
3R	19546508	3R_19546508_SNP [dm3] 3R_23720786_SNP [dm6]	T	A	2.942e^-4	0.771	SYNONYMOUS_CODING CG10232
2R	7170821	2R_7170821_SNP [dm3] 2R_11283316_SNP [dm6]	G	A	2.942e^-4	0.771	SYNONYMOUS_CODING CG9062 UPSTREAM CG13220	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
2R	5051856	2R_5051856_SNP [dm3] 2R_9164351_SNP [dm6]	G	A	2.952e^-4	0.771	SYNONYMOUS_CODING CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5260049	2L_5260049_SNP [dm3] 2L_5260049_SNP [dm6]	C	A	2.955e^-4	0.771	DOWNSTREAM CR44744 INTRON tkv
3R	9201554	3R_9201554_SNP [dm3] 3R_13375832_SNP [dm6]	A	C	2.956e^-4	0.771	INTRON CG9813	transposable element FlyBase
3R	11713977	3R_11713977_INS [dm3] 3R_15888255_INS [dm6]	T	TT	2.956e^-4	0.771	DOWNSTREAM CG14877 INTERGENIC
2L	14776780	2L_14776780_SNP [dm3] 2L_14776780_SNP [dm6]	C	G	2.958e^-4	0.771	INTERGENIC
3L	9231789	3L_9231789_SNP [dm3] 3L_9238689_SNP [dm6]	T	A	2.966e^-4	0.771	INTERGENIC
2L	12106375	2L_12106375_SNP [dm3] 2L_12106375_SNP [dm6]	T	A	2.968e^-4	0.771	SYNONYMOUS_CODING Aats-thr DOWNSTREAM Rab6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	7324136	2R_7324136_SNP [dm3] 2R_11436631_SNP [dm6]	T	C	2.973e^-4	0.771	INTRON CG7777
2R	5693024	2R_5693024_SNP [dm3] 2R_9805519_SNP [dm6]	T	A	2.989e^-4	0.771	INTRON CG1688
2R	5506344	2R_5506344_SNP [dm3] 2R_9618839_SNP [dm6]	C	T	2.991e^-4	0.771	INTRON Mmp2
2R	7324133	2R_7324133_SNP [dm3] 2R_11436628_SNP [dm6]	G	C	2.991e^-4	0.771	INTRON CG7777
2R	7324135	2R_7324135_SNP [dm3] 2R_11436630_SNP [dm6]	G	A	2.991e^-4	0.771	INTRON CG7777
2R	5734134	2R_5734134_SNP [dm3] 2R_9846629_SNP [dm6]	T	G	2.992e^-4	0.771	UPSTREAM Orc6 DOWNSTREAM Prosalpha7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2L	22923995	2L_22923995_SNP [dm3] 2L_23031263_SNP [dm6]	G	A	2.998e^-4	0.771	INTERGENIC
X	19526482	X_19526482_SNP [dm3] X_19632449_SNP [dm6]	T	G	3.027e^-4	0.771	INTRON e_y_3	TF binding site BDTNP1_TFBS_dl
2R	5777768	2R_5777768_DEL [dm3] 2R_9890263_DEL [dm6]	AGACCTTTAA	A	3.031e^-4	0.771	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
2L	14998640	2L_14998640_SNP [dm3] 2L_14998640_SNP [dm6]	G	A	3.033e^-4	0.771	INTERGENIC
3L	16450666	3L_16450666_SNP [dm3] 3L_16457566_SNP [dm6]	A	G	3.034e^-4	0.771	INTRON CG33158
X	15312326	X_15312326_SNP [dm3] X_15418293_SNP [dm6]	A	C	3.035e^-4	0.771	INTRON Cngl
2R	6110678	2R_6110678_INS [dm3] 2R_10223173_INS [dm6]	T	TAT	3.039e^-4	0.771	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
X	3518947	X_3518947_SNP [dm3] X_3624914_SNP [dm6]	T	C	3.054e^-4	0.771	INTRON AstA-R1
X	3518998	X_3518998_DEL [dm3] X_3624965_DEL [dm6]	TTTT	T	3.054e^-4	0.771	INTRON AstA-R1
X	3519015	X_3519015_SNP [dm3] X_3624982_SNP [dm6]	G	A	3.054e^-4	0.771	INTRON AstA-R1
2L	442153	2L_442153_SNP [dm3] 2L_442153_SNP [dm6]	A	C	3.057e^-4	0.771	INTRON ex	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23561801	3R_23561801_SNP [dm3] 3R_27736079_SNP [dm6]	G	C	3.062e^-4	0.771	UPSTREAM Ets98B INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10599209	3R_10599209_SNP [dm3] 3R_14773487_SNP [dm6]	T	G	3.063e^-4	0.771	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14388986	3R_14388986_SNP [dm3] 3R_18563264_SNP [dm6]	G	T	3.065e^-4	0.771	DOWNSTREAM CG43210 & 1 other INTERGENIC
3R	13467805	3R_13467805_SNP [dm3] 3R_17642083_SNP [dm6]	G	T	3.067e^-4	0.771	INTRON CG43175
3R	12832215	3R_12832215_SNP [dm3] 3R_17006493_SNP [dm6]	C	G	3.067e^-4	0.771	NON_SYNONYMOUS_CODING Irc
2L	1743492	2L_1743492_SNP [dm3] 2L_1743492_SNP [dm6]	A	C	3.068e^-4	0.771	SYNONYMOUS_CODING CG17646
2L	14784841	2L_14784841_DEL [dm3] 2L_14784841_DEL [dm6]	TT	T	3.071e^-4	0.771	UPSTREAM CG18636 INTERGENIC
2R	8593369	2R_8593369_SNP [dm3] 2R_12705864_SNP [dm6]	T	G	3.078e^-4	0.771	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5506328	2R_5506328_SNP [dm3] 2R_9618823_SNP [dm6]	G	T	3.078e^-4	0.771	INTRON Mmp2
3R	11850849	3R_11850849_SNP [dm3] 3R_16025127_SNP [dm6]	A	T	3.086e^-4	0.771	UPSTREAM pnr INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12069995	3L_12069995_SNP [dm3] 3L_12076895_SNP [dm6]	G	T	3.086e^-4	0.771	INTRON Sema-5c	TF binding site BDTNP1_TFBS_twi
2R	8359929	2R_8359929_SNP [dm3] 2R_12472424_SNP [dm6]	C	T	3.089e^-4	0.771	SYNONYMOUS_CODING CG8550 UPSTREAM dgt5 DOWNSTREAM CG8545
2R	8359538	2R_8359538_SNP [dm3] 2R_12472033_SNP [dm6]	C	A	3.090e^-4	0.771	NON_SYNONYMOUS_CODING CG8550 UPSTREAM dgt5 DOWNSTREAM CG8545	TF binding site mE1_TFBS_sens
3R	9234143	3R_9234143_SNP [dm3] 3R_13408421_SNP [dm6]	A	G	3.099e^-4	0.771	INTERGENIC
3L	5339511	3L_5339511_SNP [dm3] 3L_5346411_SNP [dm6]	C	T	3.100e^-4	0.771	UTR_5_PRIME lama
3R	12828175	3R_12828175_SNP [dm3] 3R_17002453_SNP [dm6]	A	C	3.101e^-4	0.771	UPSTREAM Irc & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8622812	2R_8622812_INS [dm3] 2R_12735307_INS [dm6]	T	TT	3.109e^-4	0.771	INTRON CG42663
2L	11409091	2L_11409091_DEL [dm3] 2L_11409091_DEL [dm6]	TGCT	T	3.117e^-4	0.771	INTERGENIC	regulatory region REDfly_CRMs
2L	11409098	2L_11409098_DEL [dm3] 2L_11409098_DEL [dm6]	TGTCAGGC	T	3.117e^-4	0.771	INTERGENIC	regulatory region REDfly_CRMs
3R	9234153	3R_9234153_SNP [dm3] 3R_13408431_SNP [dm6]	C	T	3.118e^-4	0.771	INTERGENIC
2L	14892951	2L_14892951_SNP [dm3] 2L_14892951_SNP [dm6]	C	A	3.139e^-4	0.771	INTERGENIC
X	4846399	X_4846399_SNP [dm3] X_4952366_SNP [dm6]	T	C	3.140e^-4	0.771	SYNONYMOUS_CODING Ptp4E	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	12847492	3R_12847492_SNP [dm3] 3R_17021770_SNP [dm6]	A	T	3.141e^-4	0.771	UPSTREAM AdSL INTRON Pxd	TF binding site mE1_TFBS_Ubx
3R	12846847	3R_12846847_SNP [dm3] 3R_17021125_SNP [dm6]	G	C	3.142e^-4	0.771	UPSTREAM AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2954135	2R_2954135_SNP [dm3] 2R_7066630_SNP [dm6]	T	C	3.142e^-4	0.771	DOWNSTREAM Tsp42Er INTERGENIC	TF binding site mE1_TFBS_cad
X	11041908	X_11041908_SNP [dm3] X_11147875_SNP [dm6]	C	A	3.143e^-4	0.771	INTRON Ran	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	5499975	2R_5499975_SNP [dm3] 2R_9612470_SNP [dm6]	T	C	3.145e^-4	0.771	SYNONYMOUS_CODING Mmp2 INTRON CR44069	TF binding site mE1_TFBS_sens
2L	6277387	2L_6277387_SNP [dm3] 2L_6277387_SNP [dm6]	T	G	3.151e^-4	0.771	INTRON Ddr
3R	639447	3R_639447_SNP [dm3] 3R_4813725_SNP [dm6]	A	G	3.153e^-4	0.771	START_GAINED CG1129 UTR_5_PRIME CG1129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	6546748	3L_6546748_SNP [dm3] 3L_6553648_SNP [dm6]	A	T	3.157e^-4	0.771	INTRON CG18769
2R	16945974	2R_16945974_SNP [dm3] 2R_21058469_SNP [dm6]	A	G	3.169e^-4	0.773	SYNONYMOUS_CODING cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	6613771	X_6613771_SNP [dm3] X_6719738_SNP [dm6]	A	C	3.172e^-4	0.773	DOWNSTREAM CG3168 & 1 other INTERGENIC
2L	16435778	2L_16435778_SNP [dm3] 2L_16435778_SNP [dm6]	A	C	3.188e^-4	0.773	INTRON CG5888
3L	11142531	3L_11142531_SNP [dm3] 3L_11149431_SNP [dm6]	C	T	3.190e^-4	0.773	DOWNSTREAM CG6216 INTRON CG32082
2R	5714099	2R_5714099_SNP [dm3] 2R_9826594_SNP [dm6]	A	C	3.200e^-4	0.773	NON_SYNONYMOUS_CODING dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18726209	2R_18726209_SNP [dm3] 2R_22838686_SNP [dm6]	G	A	3.201e^-4	0.773	SYNONYMOUS_CODING CG9825	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5502252	2R_5502252_SNP [dm3] 2R_9614747_SNP [dm6]	C	T	3.203e^-4	0.773	INTRON Mmp2 EXON CR44069
2L	14820677	2L_14820677_SNP [dm3] 2L_14820677_SNP [dm6]	A	C	3.206e^-4	0.773	INTERGENIC
X	18998462	X_18998462_DEL [dm3] X_19104429_DEL [dm6]	TCTATTCCTACACTTATATT...	T	3.207e^-4	0.773	INTERGENIC
2L	9970180	2L_9970180_SNP [dm3] 2L_9970180_SNP [dm6]	A	G	3.229e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13467230	3R_13467230_SNP [dm3] 3R_17641508_SNP [dm6]	C	T	3.233e^-4	0.773	INTRON CG43175
2R	5716533	2R_5716533_SNP [dm3] 2R_9829028_SNP [dm6]	C	G	3.233e^-4	0.773	NON_SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8359932	2R_8359932_SNP [dm3] 2R_12472427_SNP [dm6]	C	G	3.237e^-4	0.773	SYNONYMOUS_CODING CG8550 UPSTREAM dgt5 DOWNSTREAM CG8545
2L	14769725	2L_14769725_SNP [dm3] 2L_14769725_SNP [dm6]	G	A	3.250e^-4	0.773	INTERGENIC
2R	5722542	2R_5722542_SNP [dm3] 2R_9835037_SNP [dm6]	A	C	3.255e^-4	0.773	INTRON hebe	TF binding site mE1_TFBS_HSA
2L	6277566	2L_6277566_SNP [dm3] 2L_6277566_SNP [dm6]	A	G	3.256e^-4	0.773	INTRON Ddr
2R	5706160	2R_5706160_SNP [dm3] 2R_9818655_SNP [dm6]	T	C	3.262e^-4	0.773	DOWNSTREAM lectin-46Ca INTRON CG1648
3L	9396425	3L_9396425_SNP [dm3] 3L_9403325_SNP [dm6]	G	T	3.267e^-4	0.773	UPSTREAM eIF-4E INTERGENIC
2L	2366662	2L_2366662_SNP [dm3] 2L_2366662_SNP [dm6]	C	G	3.269e^-4	0.773	SYNONYMOUS_CODING Axud1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	7324132	2R_7324132_SNP [dm3] 2R_11436627_SNP [dm6]	T	C	3.272e^-4	0.773	INTRON CG7777
3R	12826842	3R_12826842_SNP [dm3] 3R_17001120_SNP [dm6]	T	C	3.280e^-4	0.773	SYNONYMOUS_CODING CG16941	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14749310	2L_14749310_SNP [dm3] 2L_14749310_SNP [dm6]	C	T	3.296e^-4	0.773	INTERGENIC
3R	12849957	3R_12849957_SNP [dm3] 3R_17024235_SNP [dm6]	A	C	3.299e^-4	0.773	INTRON Pxd	TF binding site mE1_TFBS_inv
3L	5885577	3L_5885577_SNP [dm3] 3L_5892477_SNP [dm6]	C	A	3.304e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10833240	2L_10833240_SNP [dm3] 2L_10833240_SNP [dm6]	T	A	3.305e^-4	0.773	INTRON Nos
2L	14790283	2L_14790283_SNP [dm3] 2L_14790283_SNP [dm6]	A	C	3.306e^-4	0.773	INTERGENIC
2R	12419514	2R_12419514_SNP [dm3] 2R_16532009_SNP [dm6]	G	A	3.309e^-4	0.773	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
2L	11409107	2L_11409107_SNP [dm3] 2L_11409107_SNP [dm6]	G	A	3.309e^-4	0.773	INTERGENIC	regulatory region REDfly_CRMs
2L	11409116	2L_11409116_SNP [dm3] 2L_11409116_SNP [dm6]	A	G	3.309e^-4	0.773	INTERGENIC	regulatory region REDfly_CRMs
2L	11409135	2L_11409135_DEL [dm3] 2L_11409135_DEL [dm6]	TG	A	3.309e^-4	0.773	INTERGENIC	regulatory region REDfly_CRMs
2L	11409164	2L_11409164_SNP [dm3] 2L_11409164_SNP [dm6]	A	G	3.309e^-4	0.773	INTERGENIC	regulatory region REDfly_CRMs
2L	11409205	2L_11409205_SNP [dm3] 2L_11409205_SNP [dm6]	C	T	3.309e^-4	0.773	INTERGENIC	regulatory region REDfly_CRMs
2L	14858606	2L_14858606_SNP [dm3] 2L_14858606_SNP [dm6]	G	C	3.310e^-4	0.773	INTERGENIC
3L	15070053	3L_15070053_SNP [dm3] 3L_15076953_SNP [dm6]	A	C	3.321e^-4	0.773	UTR_3_PRIME Or71a INTRON cp309
2R	7457254	2R_7457254_SNP [dm3] 2R_11569749_SNP [dm6]	A	C	3.323e^-4	0.773	INTERGENIC
2L	3701862	2L_3701862_SNP [dm3] 2L_3701862_SNP [dm6]	C	T	3.326e^-4	0.773	SYNONYMOUS_CODING CG43145 UPSTREAM CR44311 DOWNSTREAM Sfp24C1 & 1 other
2L	12112024	2L_12112024_SNP [dm3] 2L_12112024_SNP [dm6]	C	A	3.327e^-4	0.773	UTR_3_PRIME Phae2 DOWNSTREAM Phae2	TF binding site mE1_TFBS_cad
3L	11527237	3L_11527237_SNP [dm3] 3L_11534137_SNP [dm6]	C	A	3.328e^-4	0.773	INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11142742	3L_11142742_SNP [dm3] 3L_11149642_SNP [dm6]	G	A	3.332e^-4	0.773	UTR_3_PRIME CG6216 INTRON CG32082
2R	8622357	2R_8622357_SNP [dm3] 2R_12734852_SNP [dm6]	G	A	3.335e^-4	0.773	INTRON CG42663
2L	12309708	2L_12309708_SNP [dm3] 2L_12309708_SNP [dm6]	T	C	3.346e^-4	0.773	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3210636	X_3210636_DEL [dm3] X_3316603_DEL [dm6]	TGACT	T	3.349e^-4	0.773	UPSTREAM CG10793 INTRON dnc & 1 other
X	18173250	X_18173250_SNP [dm3] X_18279217_SNP [dm6]	T	C	3.357e^-4	0.773	INTRON upd3
3L	9050239	3L_9050239_SNP [dm3] 3L_9057139_SNP [dm6]	A	C	3.358e^-4	0.773	INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	6367024	2R_6367024_SNP [dm3] 2R_10479519_SNP [dm6]	G	A	3.358e^-4	0.773	SYNONYMOUS_CODING trsn UPSTREAM whd & 1 other DOWNSTREAM CR45134	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
3L	7239862	3L_7239862_SNP [dm3] 3L_7246762_SNP [dm6]	A	G	3.358e^-4	0.773	SYNONYMOUS_CODING Cdc27	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7067882	2R_7067882_INS [dm3] 2R_11180377_INS [dm6]	C	CTAAGACTAAC...	3.360e^-4	0.773	INTRON shn
X	15312301	X_15312301_SNP [dm3] X_15418268_SNP [dm6]	G	T	3.374e^-4	0.774	INTRON Cngl
3R	11298327	3R_11298327_INS [dm3] 3R_15472605_INS [dm6]	C	CGGTC	3.378e^-4	0.774	INTRON AdamTS-A	TF binding site mE1_TFBS_zfh1
X	6453447	X_6453447_SNP [dm3] X_6559414_SNP [dm6]	G	A	3.380e^-4	0.774	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
2R	5762331	2R_5762331_SNP [dm3] 2R_9874826_SNP [dm6]	C	G	3.383e^-4	0.774	UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12850905	3R_12850905_DEL [dm3] 3R_17025183_DEL [dm6]	ACCATA	A	3.384e^-4	0.774	INTRON Pxd
3L	1066588	3L_1066588_SNP [dm3] 3L_1066588_SNP [dm6]	T	A	3.389e^-4	0.774	INTRON bab1
3L	10965443	3L_10965443_SNP [dm3] 3L_10972343_SNP [dm6]	A	C	3.390e^-4	0.774	UPSTREAM CG14147 INTERGENIC
X	8684434	X_8684434_SNP [dm3] X_8790401_SNP [dm6]	G	A	3.394e^-4	0.774	INTRON Lim1
3R	14389035	3R_14389035_SNP [dm3] 3R_18563313_SNP [dm6]	T	C	3.416e^-4	0.777	DOWNSTREAM CG43210 & 1 other INTERGENIC
3R	13730439	3R_13730439_DEL [dm3] 3R_17904717_DEL [dm6]	GA	T	3.418e^-4	0.777	INTRON Rim
2L	12117040	2L_12117040_SNP [dm3] 2L_12117040_SNP [dm6]	T	C	3.426e^-4	0.778	INTRON CG17211
2L	11426402	2L_11426402_SNP [dm3] 2L_11426402_SNP [dm6]	G	T	3.438e^-4	0.778	INTERGENIC
3R	18998579	3R_18998579_SNP [dm3] 3R_23172857_SNP [dm6]	A	T	3.445e^-4	0.778	INTRON Irk1
2R	6332431	2R_6332431_SNP [dm3] 2R_10444926_SNP [dm6]	G	C	3.448e^-4	0.778	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6332433	2R_6332433_MNP [dm3] 2R_10444928_MNP [dm6]	TTAA	CATT	3.448e^-4	0.778	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6332438	2R_6332438_DEL [dm3] 2R_10444933_DEL [dm6]	GAAAACCA	T	3.448e^-4	0.778	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5668750	2R_5668750_SNP [dm3] 2R_9781245_SNP [dm6]	A	G	3.457e^-4	0.779	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10832406	2L_10832406_SNP [dm3] 2L_10832406_SNP [dm6]	C	T	3.462e^-4	0.779	INTRON Nos
3L	8865335	3L_8865335_SNP [dm3] 3L_8872235_SNP [dm6]	T	G	3.467e^-4	0.779	INTRON dally	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22401085	3L_22401085_SNP [dm3] 3L_22407985_SNP [dm6]	G	A	3.469e^-4	0.779	UPSTREAM Ten-m INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2R	7406943	2R_7406943_SNP [dm3] 2R_11519438_SNP [dm6]	T	C	3.473e^-4	0.779	INTERGENIC
2R	12775975	2R_12775975_SNP [dm3] 2R_16888470_SNP [dm6]	G	A	3.499e^-4	0.784	INTRON CG8910
3R	17795816	3R_17795816_SNP [dm3] 3R_21970094_SNP [dm6]	A	G	3.508e^-4	0.784	INTRON Eip93F
2R	5704291	2R_5704291_SNP [dm3] 2R_9816786_SNP [dm6]	T	A	3.509e^-4	0.784	UPSTREAM lectin-46Ca DOWNSTREAM lectin-46Cb INTRON CG1648
2R	5686939	2R_5686939_SNP [dm3] 2R_9799434_SNP [dm6]	G	A	3.514e^-4	0.784	INTRON CG1688
3R	15204751	3R_15204751_SNP [dm3] 3R_19379029_SNP [dm6]	C	G	3.516e^-4	0.784	INTRON Ino80
3R	12614981	3R_12614981_SNP [dm3] 3R_16789259_SNP [dm6]	T	C	3.524e^-4	0.785	SYNONYMOUS_CODING Glut3	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	3419728	2L_3419728_SNP [dm3] 2L_3419728_SNP [dm6]	G	T	3.552e^-4	0.787	INTRON pgant2
2L	9970243	2L_9970243_DEL [dm3] 2L_9970243_DEL [dm6]	AA	A	3.555e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7746439	X_7746439_SNP [dm3] X_7852406_SNP [dm6]	C	T	3.557e^-4	0.787	DOWNSTREAM CG10920 INTERGENIC
2R	5708201	2R_5708201_SNP [dm3] 2R_9820696_SNP [dm6]	T	A	3.569e^-4	0.787	UPSTREAM CG1648 DOWNSTREAM CG30001 INTRON CG34033	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12126432	2L_12126432_SNP [dm3] 2L_12126432_SNP [dm6]	A	G	3.574e^-4	0.787	SYNONYMOUS_CODING CG17211
2R	7406959	2R_7406959_SNP [dm3] 2R_11519454_SNP [dm6]	G	A	3.574e^-4	0.787	INTERGENIC
X	5338470	X_5338470_SNP [dm3] X_5444437_SNP [dm6]	A	G	3.576e^-4	0.787	INTERGENIC
3R	15197020	3R_15197020_INS [dm3] 3R_19371298_INS [dm6]	A	AGGA	3.581e^-4	0.787	INTRON Ino80
3R	26164345	3R_26164345_SNP [dm3] 3R_30338623_SNP [dm6]	A	G	3.583e^-4	0.787	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17401687	3R_17401687_SNP [dm3] 3R_21575965_SNP [dm6]	C	T	3.597e^-4	0.787	INTRON InR	TF binding site mE1_TFBS_cad
2L	581314	2L_581314_SNP [dm3] 2L_581314_SNP [dm6]	T	C	3.598e^-4	0.787	INTERGENIC
X	7798513	X_7798513_SNP [dm3] X_7904480_SNP [dm6]	C	G	3.598e^-4	0.787	UTR_3_PRIME dpr14 DOWNSTREAM bys
2L	12495746	2L_12495746_SNP [dm3] 2L_12495746_SNP [dm6]	C	T	3.601e^-4	0.787	DOWNSTREAM t-cup INTRON bun
2R	6252785	2R_6252785_SNP [dm3] 2R_10365280_SNP [dm6]	C	T	3.601e^-4	0.787	UPSTREAM CG42732 INTRON CG42732
3R	12824985	3R_12824985_SNP [dm3] 3R_16999263_SNP [dm6]	T	C	3.605e^-4	0.787	SYNONYMOUS_CODING CG3534 DOWNSTREAM CG16941
2R	8922887	2R_8922887_SNP [dm3] 2R_13035382_SNP [dm6]	A	T	3.608e^-4	0.787	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6545961	2R_6545961_SNP [dm3] 2R_10658456_SNP [dm6]	T	A	3.613e^-4	0.787	UPSTREAM CR44452 INTERGENIC
3R	9241621	3R_9241621_SNP [dm3] 3R_13415899_SNP [dm6]	A	T	3.618e^-4	0.787	UPSTREAM yellow-e INTERGENIC
X	5093004	X_5093004_SNP [dm3] X_5198971_SNP [dm6]	T	A	3.622e^-4	0.787	INTRON rg & 1 other
2R	8630758	2R_8630758_SNP [dm3] 2R_12743253_SNP [dm6]	C	G	3.622e^-4	0.787	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19857635	X_19857635_SNP [dm3] X_19963602_SNP [dm6]	G	T	3.624e^-4	0.787	INTRON Nep3
2R	12995031	2R_12995031_SNP [dm3] 2R_17107526_SNP [dm6]	A	T	3.625e^-4	0.787	UTR_3_PRIME CG30456
3L	15613975	3L_15613975_SNP [dm3] 3L_15620875_SNP [dm6]	C	T	3.633e^-4	0.787	SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	12399529	2R_12399529_SNP [dm3] 2R_16512024_SNP [dm6]	T	A	3.639e^-4	0.787	INTRON Sema-2a
2R	15198541	2R_15198541_DEL [dm3] 2R_19311036_DEL [dm6]	AATCATTTTTCAACAT...	A	3.639e^-4	0.787	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
3L	7386823	3L_7386823_SNP [dm3] 3L_7393723_SNP [dm6]	C	A	3.652e^-4	0.788	SYNONYMOUS_CODING CG8563	TF binding site mE1_TFBS_cad
2R	12340989	2R_12340989_SNP [dm3] 2R_16453484_SNP [dm6]	G	C	3.663e^-4	0.788	INTERGENIC
3R	12840081	3R_12840081_INS [dm3] 3R_17014359_INS [dm6]	A	AA	3.663e^-4	0.788	UPSTREAM Pxd INTERGENIC
2R	17259746	2R_17259746_SNP [dm3] 2R_21372241_SNP [dm6]	A	T	3.668e^-4	0.788	INTRON cv-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11943440	2R_11943440_INS [dm3] 2R_16055935_INS [dm6]	T	TGT	3.668e^-4	0.788	INTRON CG8405
3R	26181426	3R_26181426_SNP [dm3] 3R_30355704_SNP [dm6]	G	A	3.670e^-4	0.788	INTRON hdc
3R	16581131	3R_16581131_SNP [dm3] 3R_20755409_SNP [dm6]	G	A	3.676e^-4	0.789	SYNONYMOUS_CODING CG42322 UTR_3_PRIME CG42322	TF binding site mE1_TFBS_inv
2L	5154887	2L_5154887_SNP [dm3] 2L_5154887_SNP [dm6]	T	C	3.680e^-4	0.789	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13946539	3R_13946539_SNP [dm3] 3R_18120817_SNP [dm6]	G	T	3.687e^-4	0.789	INTRON sr	TF binding site BDTNP1_TFBS_dl
3R	26958852	3R_26958852_SNP [dm3] 3R_31133130_SNP [dm6]	A	C	3.695e^-4	0.79	DOWNSTREAM CR43458 INTERGENIC
3R	5494483	3R_5494483_SNP [dm3] 3R_9668761_SNP [dm6]	T	A	3.711e^-4	0.793	INTRON CG9492
3L	15954163	3L_15954163_SNP [dm3] 3L_15961063_SNP [dm6]	A	G	3.720e^-4	0.794	SYNONYMOUS_CODING l_3_72Ab DOWNSTREAM CG17032	TF binding site mE1_TFBS_cad
2L	14787314	2L_14787314_SNP [dm3] 2L_14787314_SNP [dm6]	C	A	3.735e^-4	0.796	INTERGENIC
X	5846292	X_5846292_SNP [dm3] X_5952259_SNP [dm6]	A	G	3.748e^-4	0.796	UPSTREAM CG6048 DOWNSTREAM CG32755 INTERGENIC
3R	12837120	3R_12837120_SNP [dm3] 3R_17011398_SNP [dm6]	C	G	3.750e^-4	0.796	INTRON CG8907	TF binding site mE1_TFBS_cad
X	8178751	X_8178751_SNP [dm3] X_8284718_SNP [dm6]	T	G	3.752e^-4	0.796	INTRON nAChRalpha3
3R	14325167	3R_14325167_DEL [dm3] 3R_18499445_DEL [dm6]	AGTAA	A	3.755e^-4	0.796	INTRON fru
3L	11023846	3L_11023846_SNP [dm3] 3L_11030746_SNP [dm6]	C	T	3.757e^-4	0.796	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6762064	3R_6762064_SNP [dm3] 3R_10936342_SNP [dm6]	C	T	3.758e^-4	0.796	INTERGENIC
2L	2013439	2L_2013439_SNP [dm3] 2L_2013439_SNP [dm6]	G	A	3.766e^-4	0.796	UPSTREAM tRNA:CR31669 INTRON CG4238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10118202	3L_10118202_SNP [dm3] 3L_10125102_SNP [dm6]	T	C	3.772e^-4	0.797	INTRON dpr6
3L	14582960	3L_14582960_SNP [dm3] 3L_14589860_SNP [dm6]	T	A	3.795e^-4	0.801	INTRON HGTX
2L	14751366	2L_14751366_SNP [dm3] 2L_14751366_SNP [dm6]	C	T	3.802e^-4	0.801	INTERGENIC
2L	11478140	2L_11478140_SNP [dm3] 2L_11478140_SNP [dm6]	T	C	3.808e^-4	0.801	INTERGENIC
2L	14815380	2L_14815380_SNP [dm3] 2L_14815380_SNP [dm6]	T	C	3.814e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3252189	3R_3252189_SNP [dm3] 3R_7426467_SNP [dm6]	G	A	3.820e^-4	0.801	INTERGENIC
2L	17709820	2L_17709820_SNP [dm3] 2L_17709820_SNP [dm6]	A	T	3.821e^-4	0.801	INTRON CadN
X	19364133	X_19364133_SNP [dm3] X_19470100_SNP [dm6]	A	G	3.827e^-4	0.801	UTR_3_PRIME kek5 DOWNSTREAM kek5	TF binding site mE1_TFBS_cad
X	15313017	X_15313017_SNP [dm3] X_15418984_SNP [dm6]	T	G	3.828e^-4	0.801	INTRON Cngl
2L	14378300	2L_14378300_SNP [dm3] 2L_14378300_SNP [dm6]	A	G	3.843e^-4	0.803	UTR_3_PRIME ppk
3L	12677746	3L_12677746_SNP [dm3] 3L_12684646_SNP [dm6]	A	C	3.843e^-4	0.803	INTERGENIC
3L	10958549	3L_10958549_SNP [dm3] 3L_10965449_SNP [dm6]	G	A	3.851e^-4	0.803	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19987137	3R_19987137_SNP [dm3] 3R_24161415_SNP [dm6]	A	C	3.853e^-4	0.803	UPSTREAM CG6182 & 1 other INTRON Myo95E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7324170	2R_7324170_SNP [dm3] 2R_11436665_SNP [dm6]	T	G	3.860e^-4	0.804	INTRON CG7777
3L	15305832	3L_15305832_SNP [dm3] 3L_15312732_SNP [dm6]	T	A	3.869e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	24951601	3R_24951601_SNP [dm3] 3R_29125879_SNP [dm6]	C	T	3.869e^-4	0.804	SYNONYMOUS_CODING CG11880	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3780218	3L_3780218_SNP [dm3] 3L_3780218_SNP [dm6]	G	A	3.882e^-4	0.805	INTRON CG32264
X	1072196	X_1072196_SNP [dm3] X_1178163_SNP [dm6]	G	T	3.882e^-4	0.805	INTERGENIC
X	19531277	X_19531277_SNP [dm3] X_19637244_SNP [dm6]	A	G	3.890e^-4	0.805	UTR_5_PRIME e_y_3 INTRON e_y_3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	5686891	2R_5686891_SNP [dm3] 2R_9799386_SNP [dm6]	T	A	3.896e^-4	0.806	INTRON CG1688
X	3931267	X_3931267_SNP [dm3] X_4037234_SNP [dm6]	T	C	3.907e^-4	0.806	INTERGENIC
2L	13635623	2L_13635623_DEL [dm3] 2L_13635623_DEL [dm6]	AA	A	3.912e^-4	0.806	INTRON kuz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12849954	3R_12849954_SNP [dm3] 3R_17024232_SNP [dm6]	C	A	3.922e^-4	0.806	INTRON Pxd	TF binding site mE1_TFBS_inv
2L	16967545	2L_16967545_SNP [dm3] 2L_16967545_SNP [dm6]	T	G	3.926e^-4	0.806	INTERGENIC
3R	24006847	3R_24006847_SNP [dm3] 3R_28181125_SNP [dm6]	C	T	3.929e^-4	0.806	INTRON CG34354
3L	16874529	3L_16874529_SNP [dm3] 3L_16881429_SNP [dm6]	A	T	3.932e^-4	0.806	INTRON Lmpt
2R	5231896	2R_5231896_SNP [dm3] 2R_9344391_SNP [dm6]	T	C	3.933e^-4	0.806	UPSTREAM Or45a INTRON CG13954 & 1 other
2L	2823385	2L_2823385_SNP [dm3] 2L_2823385_SNP [dm6]	T	C	3.939e^-4	0.806	DOWNSTREAM CG3123 INTRON Duox
2L	14775982	2L_14775982_SNP [dm3] 2L_14775982_SNP [dm6]	A	C	3.947e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	7391540	2R_7391540_SNP [dm3] 2R_11504035_SNP [dm6]	C	T	3.949e^-4	0.806	INTRON inv
3R	5723302	3R_5723302_DEL [dm3] 3R_9897580_DEL [dm6]	GCTGC	G	3.954e^-4	0.806	INTRON Glut4EF
2R	5731932	2R_5731932_SNP [dm3] 2R_9844427_SNP [dm6]	T	C	3.958e^-4	0.806	INTRON CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	6750048	2R_6750048_SNP [dm3] 2R_10862543_SNP [dm6]	C	T	3.960e^-4	0.806	INTRON CG30015	TF binding site mE1_TFBS_Trl
X	13332053	X_13332053_SNP [dm3] X_13438020_SNP [dm6]	C	A	3.962e^-4	0.806	INTERGENIC
3R	9763623	3R_9763623_SNP [dm3] 3R_13937901_SNP [dm6]	A	T	3.964e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9634862	2L_9634862_SNP [dm3] 2L_9634862_SNP [dm6]	T	G	3.971e^-4	0.807	INTRON Apoltp
3L	12474189	3L_12474189_SNP [dm3] 3L_12481089_SNP [dm6]	C	G	3.977e^-4	0.807	INTRON CG10663
2R	5708485	2R_5708485_SNP [dm3] 2R_9820980_SNP [dm6]	G	C	3.980e^-4	0.807	NON_SYNONYMOUS_CODING CG34033 UPSTREAM CG1648 DOWNSTREAM CG30001	TF binding site mE1_TFBS_sens
2R	18245371	2R_18245371_SNP [dm3] 2R_22357866_SNP [dm6]	C	A	3.983e^-4	0.807	INTRON Liprin-gamma
3R	12090234	3R_12090234_SNP [dm3] 3R_16264512_SNP [dm6]	T	A	3.997e^-4	0.807	NON_SYNONYMOUS_CODING asun UPSTREAM bor	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2L	16498313	2L_16498313_SNP [dm3] 2L_16498313_SNP [dm6]	A	T	4.001e^-4	0.807	INTRON Tpr2	TF binding site mE1_TFBS_cad
2R	5719783	2R_5719783_SNP [dm3] 2R_9832278_SNP [dm6]	A	T	4.008e^-4	0.807	UPSTREAM hebe INTRON hebe
2L	2045889	2L_2045889_SNP [dm3] 2L_2045889_SNP [dm6]	A	G	4.014e^-4	0.807	SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	7215407	3L_7215407_SNP [dm3] 3L_7222307_SNP [dm6]	G	A	4.015e^-4	0.807	UPSTREAM CR45410 INTERGENIC
3R	24006862	3R_24006862_SNP [dm3] 3R_28181140_SNP [dm6]	A	G	4.015e^-4	0.807	INTRON CG34354
X	20373469	X_20373469_SNP [dm3] X_20502442_SNP [dm6]	C	G	4.016e^-4	0.807	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2458496	X_2458496_SNP [dm3] X_2564463_SNP [dm6]	T	G	4.027e^-4	0.809	INTRON Pdfr
3R	9215913	3R_9215913_SNP [dm3] 3R_13390191_SNP [dm6]	C	T	4.036e^-4	0.809	NON_SYNONYMOUS_CODING CCHa2
3R	11889864	3R_11889864_SNP [dm3] 3R_16064142_SNP [dm6]	A	G	4.036e^-4	0.809	SYNONYMOUS_CODING CG10185	TF binding site mE1_TFBS_HSA
2L	11409053	2L_11409053_SNP [dm3] 2L_11409053_SNP [dm6]	A	T	4.044e^-4	0.809	INTERGENIC	regulatory region REDfly_CRMs
3R	16129918	3R_16129918_SNP [dm3] 3R_20304196_SNP [dm6]	A	G	4.048e^-4	0.809	UTR_3_PRIME CG4367 DOWNSTREAM cic
X	19345968	X_19345968_SNP [dm3] X_19451935_SNP [dm6]	C	T	4.050e^-4	0.809	INTRON kek5
2R	5680249	2R_5680249_SNP [dm3] 2R_9792744_SNP [dm6]	G	T	4.059e^-4	0.809	UPSTREAM CG1698 INTRON CG1688
X	2802120	X_2802120_SNP [dm3] X_2908087_SNP [dm6]	C	A	4.064e^-4	0.809	INTRON kirre
2L	16467971	2L_16467971_SNP [dm3] 2L_16467971_SNP [dm6]	G	C	4.064e^-4	0.809	INTRON dac	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14750518	2L_14750518_SNP [dm3] 2L_14750518_SNP [dm6]	T	C	4.066e^-4	0.809	INTERGENIC
2R	5755529	2R_5755529_SNP [dm3] 2R_9868024_SNP [dm6]	C	T	4.082e^-4	0.811	UPSTREAM CR45138 INTRON cbx	transposable element FlyBase
2R	5876100	2R_5876100_SNP [dm3] 2R_9988595_SNP [dm6]	T	G	4.085e^-4	0.811	UPSTREAM TER94 EXON CR45324	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1906934	2L_1906934_SNP [dm3] 2L_1906934_SNP [dm6]	A	G	4.089e^-4	0.811	INTRON CG7337
2L	11409166	2L_11409166_SNP [dm3] 2L_11409166_SNP [dm6]	A	T	4.101e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs
3R	20912371	3R_20912371_SNP [dm3] 3R_25086649_SNP [dm6]	A	T	4.103e^-4	0.811	INTERGENIC
3R	12105726	3R_12105726_SNP [dm3] 3R_16280004_SNP [dm6]	G	A	4.104e^-4	0.811	UPSTREAM gish INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2L	496826	2L_496826_SNP [dm3] 2L_496826_SNP [dm6]	G	C	4.116e^-4	0.812	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7474748	3L_7474748_SNP [dm3] 3L_7481648_SNP [dm6]	A	C	4.117e^-4	0.812	INTERGENIC
3L	15163508	3L_15163508_SNP [dm3] 3L_15170408_SNP [dm6]	T	G	4.133e^-4	0.812	INTERGENIC
3R	13974089	3R_13974089_SNP [dm3] 3R_18148367_SNP [dm6]	T	A	4.134e^-4	0.812	INTERGENIC
2R	14710525	2R_14710525_SNP [dm3] 2R_18823020_SNP [dm6]	G	A	4.136e^-4	0.812	SYNONYMOUS_CODING CG15097 DOWNSTREAM Phb2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3990305	X_3990305_SNP [dm3] X_4096272_SNP [dm6]	A	G	4.142e^-4	0.812	INTERGENIC
X	15313021	X_15313021_SNP [dm3] X_15418988_SNP [dm6]	A	T	4.148e^-4	0.812	INTRON Cngl
3L	12004994	3L_12004994_SNP [dm3] 3L_12011894_SNP [dm6]	G	A	4.150e^-4	0.812	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8690701	3L_8690701_SNP [dm3] 3L_8697601_SNP [dm6]	G	T	4.151e^-4	0.812	INTERGENIC
2L	14753294	2L_14753294_SNP [dm3] 2L_14753294_SNP [dm6]	G	C	4.155e^-4	0.812	INTERGENIC
3R	2538293	3R_2538293_SNP [dm3] 3R_6712571_SNP [dm6]	T	G	4.156e^-4	0.812	INTRON pb	regulatory region REDfly_CRMs
X	4546611	X_4546611_SNP [dm3] X_4652578_SNP [dm6]	T	C	4.165e^-4	0.812	SYNONYMOUS_CODING CG15473 INTRON Cbp80	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19515250	X_19515250_SNP [dm3] X_19621217_SNP [dm6]	T	G	4.167e^-4	0.812	UTR_5_PRIME CG14221 UPSTREAM CG14221 DOWNSTREAM NAA20	TF binding site mE1_TFBS_cad
2R	7487142	2R_7487142_INS [dm3] 2R_11599637_INS [dm6]	T	TT	4.168e^-4	0.812	SPLICE_SITE_REGION tou UTR_5_PRIME tou INTRON tou	TF binding site BDTNP1_TFBS_dl
3L	11144918	3L_11144918_SNP [dm3] 3L_11151818_SNP [dm6]	C	T	4.172e^-4	0.812	INTRON CG32082
3R	18982491	3R_18982491_SNP [dm3] 3R_23156769_SNP [dm6]	G	A	4.180e^-4	0.812	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7198258	2L_7198258_SNP [dm3] 2L_7198258_SNP [dm6]	T	G	4.183e^-4	0.812	INTRON CG4502
X	18446528	X_18446528_SNP [dm3] X_18552495_SNP [dm6]	C	G	4.188e^-4	0.812	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18145742	3L_18145742_SNP [dm3] 3L_18152642_SNP [dm6]	A	C	4.189e^-4	0.812	INTRON CG7330
3L	15613828	3L_15613828_SNP [dm3] 3L_15620728_SNP [dm6]	T	C	4.194e^-4	0.812	SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	2967285	2R_2967285_SNP [dm3] 2R_7079780_SNP [dm6]	G	A	4.197e^-4	0.812	INTERGENIC
3L	7621394	3L_7621394_SNP [dm3] 3L_7628294_SNP [dm6]	A	G	4.211e^-4	0.812	INTRON CG33275	TF binding site mE1_TFBS_inv
2L	12855429	2L_12855429_SNP [dm3] 2L_12855429_SNP [dm6]	T	A	4.214e^-4	0.812	INTERGENIC
3R	17522819	3R_17522819_SNP [dm3] 3R_21697097_SNP [dm6]	G	T	4.219e^-4	0.812	INTRON CG31176
3R	14216008	3R_14216008_SNP [dm3] 3R_18390286_SNP [dm6]	G	A	4.221e^-4	0.812	UPSTREAM Vha100-4 DOWNSTREAM Vha100-2 INTERGENIC
X	3716052	X_3716052_SNP [dm3] X_3822019_SNP [dm6]	G	A	4.224e^-4	0.812	INTRON ec	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12005150	3L_12005150_SNP [dm3] 3L_12012050_SNP [dm6]	G	C	4.225e^-4	0.812	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22342609	3L_22342609_SNP [dm3] 3L_22349509_SNP [dm6]	G	T	4.228e^-4	0.812	INTRON Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4544061	X_4544061_SNP [dm3] X_4650028_SNP [dm6]	A	C	4.237e^-4	0.813	UTR_5_PRIME Torsin & 1 other UPSTREAM Cbp80 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	5209908	2L_5209908_SNP [dm3] 2L_5209908_SNP [dm6]	T	C	4.241e^-4	0.813	UPSTREAM Cyp28d1 DOWNSTREAM Cyp28d2 INTERGENIC
2R	5708083	2R_5708083_SNP [dm3] 2R_9820578_SNP [dm6]	A	G	4.247e^-4	0.813	NON_SYNONYMOUS_CODING CG34033 UPSTREAM CG1648 DOWNSTREAM CG30001	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	5846284	X_5846284_INS [dm3] X_5952251_INS [dm6]	AT	CCCA	4.257e^-4	0.814	UPSTREAM CG6048 DOWNSTREAM CG32755 INTERGENIC
3L	7841915	3L_7841915_INS [dm3] 3L_7848815_INS [dm6]	A	ATATATCCACAATCATATAT...	4.276e^-4	0.816	INTRON Pdp1	regulatory region REDfly_CRMs
3L	11004879	3L_11004879_SNP [dm3] 3L_11011779_SNP [dm6]	A	G	4.276e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	5789262	2R_5789262_SNP [dm3] 2R_9901757_SNP [dm6]	G	A	4.292e^-4	0.817	INTRON CG1441	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7480018	2L_7480018_SNP [dm3] 2L_7480018_SNP [dm6]	G	A	4.298e^-4	0.817	SYNONYMOUS_CODING Ziz
3L	10960494	3L_10960494_SNP [dm3] 3L_10967394_SNP [dm6]	G	A	4.300e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8432123	2R_8432123_SNP [dm3] 2R_12544618_SNP [dm6]	C	T	4.308e^-4	0.817	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9339644	X_9339644_SNP [dm3] X_9445611_SNP [dm6]	T	A	4.310e^-4	0.817	DOWNSTREAM CG44815 INTRON mgl
3R	20164904	3R_20164904_SNP [dm3] 3R_24339182_SNP [dm6]	C	T	4.311e^-4	0.817	SYNONYMOUS_CODING CG6432 UPSTREAM mir-1015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9277087	3R_9277087_SNP [dm3] 3R_13451365_SNP [dm6]	C	T	4.314e^-4	0.817	INTRON CG14372
2R	18347140	2R_18347140_SNP [dm3] 2R_22459635_SNP [dm6]	G	A	4.321e^-4	0.817	INTRON CG10384
3R	12832738	3R_12832738_DEL [dm3] 3R_17007016_DEL [dm6]	GA	G	4.332e^-4	0.817	INTRON Irc
X	15311955	X_15311955_SNP [dm3] X_15417922_SNP [dm6]	A	C	4.334e^-4	0.817	INTRON Cngl
2L	556857	2L_556857_SNP [dm3] 2L_556857_SNP [dm6]	A	C	4.337e^-4	0.817	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	2669793	2L_2669793_SNP [dm3] 2L_2669793_SNP [dm6]	G	T	4.344e^-4	0.817	UPSTREAM Gr23a INTERGENIC
X	1071297	X_1071297_SNP [dm3] X_1177264_SNP [dm6]	G	A	4.345e^-4	0.817	INTERGENIC
X	1073770	X_1073770_SNP [dm3] X_1179737_SNP [dm6]	G	A	4.345e^-4	0.817	UPSTREAM CG11379 INTERGENIC
X	1076842	X_1076842_SNP [dm3] X_1182809_SNP [dm6]	C	T	4.345e^-4	0.817	SYNONYMOUS_CODING CG14627	TF binding site mE1_TFBS_chinmo
2R	4259353	2R_4259353_SNP [dm3] 2R_8371848_SNP [dm6]	C	T	4.357e^-4	0.817	SYNONYMOUS_CODING CG8701 INTRON pdm3
3L	16322911	3L_16322911_SNP [dm3] 3L_16329811_SNP [dm6]	T	C	4.360e^-4	0.817	UTR_5_PRIME CG33061 DOWNSTREAM CG13058

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.006e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.001519

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	19.5791	0.0001

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2060 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	9161604	3L_9161604_SNP [dm3] 3L_9168504_SNP [dm6]	T	G	1.200e^-6	0.903	INTRON Rdl
3R	2306995	3R_2306995_SNP [dm3] 3R_6481273_SNP [dm6]	T	C	1.392e^-6	0.903	INTRON CG15186
2R	14219961	2R_14219961_SNP [dm3] 2R_18332456_SNP [dm6]	T	C	2.764e^-6	0.903	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	3889915	2L_3889915_SNP [dm3] 2L_3889915_SNP [dm6]	T	C	3.344e^-6	0.903	UTR_5_PRIME capu INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2R	13409006	2R_13409006_SNP [dm3] 2R_17521501_SNP [dm6]	G	A	4.125e^-6	0.903	INTRON Patronin
2L	9465709	2L_9465709_SNP [dm3] 2L_9465709_SNP [dm6]	A	G	4.619e^-6	0.903	INTERGENIC
3R	23799554	3R_23799554_SNP [dm3] 3R_27973832_SNP [dm6]	A	T	4.744e^-6	0.903	INTRON betaTub97EF
X	16628355	X_16628355_SNP [dm3] X_16734322_SNP [dm6]	T	A	5.486e^-6	0.903	UPSTREAM TwdlY INTRON CG9634
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	5.768e^-6	0.903	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
3L	12195874	3L_12195874_DEL [dm3] 3L_12202774_DEL [dm6]	AGCTA	A	5.979e^-6	0.903	INTRON Adk1
3L	14189504	3L_14189504_SNP [dm3] 3L_14196404_SNP [dm6]	A	T	7.153e^-6	0.903	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3890873	2L_3890873_SNP [dm3] 2L_3890873_SNP [dm6]	T	C	7.337e^-6	0.903	UPSTREAM capu INTRON capu
3L	20549471	3L_20549471_SNP [dm3] 3L_20556371_SNP [dm6]	G	T	8.641e^-6	0.903	INTERGENIC
3R	25562532	3R_25562532_SNP [dm3] 3R_29736810_SNP [dm6]	G	A	9.343e^-6	0.903	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	13405958	2R_13405958_SNP [dm3] 2R_17518453_SNP [dm6]	T	G	9.479e^-6	0.903	UPSTREAM APC10 DOWNSTREAM Patronin INTRON CG4866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5762331	2R_5762331_SNP [dm3] 2R_9874826_SNP [dm6]	C	G	9.600e^-6	0.903	UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	9.648e^-6	0.903	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	9.740e^-6	0.903	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5779845	2R_5779845_SNP [dm3] 2R_9892340_SNP [dm6]	A	T	9.965e^-6	0.903	NON_SYNONYMOUS_CODING CG30007 UPSTREAM CG1513	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1235477	2L_1235477_SNP [dm3] 2L_1235477_SNP [dm6]	C	T	1.008e^-5	0.903	INTERGENIC
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	1.127e^-5	0.903	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
3L	14189503	3L_14189503_SNP [dm3] 3L_14196403_SNP [dm6]	G	A	1.245e^-5	0.903	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	13812730	2R_13812730_SNP [dm3] 2R_17925225_SNP [dm6]	G	A	1.258e^-5	0.903	SYNONYMOUS_CODING Elk
2R	13812732	2R_13812732_SNP [dm3] 2R_17925227_SNP [dm6]	G	C	1.307e^-5	0.903	NON_SYNONYMOUS_CODING Elk
3R	11812360	3R_11812360_SNP [dm3] 3R_15986638_SNP [dm6]	G	A	1.312e^-5	0.903	UTR_5_PRIME srp EXON CR44133	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1235419	2L_1235419_SNP [dm3] 2L_1235419_SNP [dm6]	C	G	1.352e^-5	0.903	INTERGENIC
2L	1228294	2L_1228294_SNP [dm3] 2L_1228294_SNP [dm6]	C	A	1.774e^-5	0.903	SYNONYMOUS_CODING CG42329
2L	3421300	2L_3421300_SNP [dm3] 2L_3421300_SNP [dm6]	G	C	1.787e^-5	0.903	INTRON pgant2
2R	11277521	2R_11277521_SNP [dm3] 2R_15390016_SNP [dm6]	A	G	1.815e^-5	0.903	INTERGENIC
2R	13863482	2R_13863482_SNP [dm3] 2R_17975977_SNP [dm6]	T	A	1.823e^-5	0.903	UTR_3_PRIME dpr13
2R	15712134	2R_15712134_SNP [dm3] 2R_19824629_SNP [dm6]	G	A	1.829e^-5	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_Trl
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	1.855e^-5	0.903	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2R	20120826	2R_20120826_SNP [dm3] 2R_24233303_SNP [dm6]	G	C	1.857e^-5	0.903	INTERGENIC
2L	3879593	2L_3879593_INS [dm3] 2L_3879593_INS [dm6]	A	AA	1.868e^-5	0.903	INTRON capu
2R	14760371	2R_14760371_SNP [dm3] 2R_18872866_SNP [dm6]	G	A	1.869e^-5	0.903	INTERGENIC
2L	3890875	2L_3890875_SNP [dm3] 2L_3890875_SNP [dm6]	G	A	1.950e^-5	0.903	UPSTREAM capu INTRON capu
3R	26751873	3R_26751873_SNP [dm3] 3R_30926151_SNP [dm6]	C	T	1.963e^-5	0.903	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
X	11352197	X_11352197_SNP [dm3] X_11458164_SNP [dm6]	A	C	2.024e^-5	0.903	INTRON HP5
2R	11219211	2R_11219211_SNP [dm3] 2R_15331706_SNP [dm6]	A	G	2.099e^-5	0.903	UPSTREAM CR44371 INTRON Hr51	TF binding site BDTNP1_TFBS_dl
3R	11998893	3R_11998893_SNP [dm3] 3R_16173171_SNP [dm6]	A	G	2.248e^-5	0.903	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5781414	2R_5781414_SNP [dm3] 2R_9893909_SNP [dm6]	T	A	2.380e^-5	0.903	INTRON CG30007
2R	5781437	2R_5781437_SNP [dm3] 2R_9893932_SNP [dm6]	A	C	2.413e^-5	0.903	INTRON CG30007
2L	10915601	2L_10915601_SNP [dm3] 2L_10915601_SNP [dm6]	C	T	2.572e^-5	0.903	INTERGENIC
X	4099232	X_4099232_SNP [dm3] X_4205199_SNP [dm6]	G	A	2.647e^-5	0.903	INTRON Fas2
2R	11334294	2R_11334294_SNP [dm3] 2R_15446789_SNP [dm6]	G	T	2.648e^-5	0.903	INTRON CG43729
2R	12712619	2R_12712619_SNP [dm3] 2R_16825114_SNP [dm6]	A	T	2.687e^-5	0.903	UTR_5_PRIME CG34459 UPSTREAM CG34459 INTRON CG34459
2R	12559260	2R_12559260_SNP [dm3] 2R_16671755_SNP [dm6]	G	A	2.747e^-5	0.903	UTR_3_PRIME CG34457 UPSTREAM CG34458
3L	18304684	3L_18304684_SNP [dm3] 3L_18311584_SNP [dm6]	A	T	2.791e^-5	0.903	INTERGENIC
2R	13867788	2R_13867788_SNP [dm3] 2R_17980283_SNP [dm6]	A	T	2.839e^-5	0.903	INTRON dpr13
2R	13867801	2R_13867801_SNP [dm3] 2R_17980296_SNP [dm6]	A	C	2.839e^-5	0.903	INTRON dpr13
3L	10377618	3L_10377618_SNP [dm3] 3L_10384518_SNP [dm6]	A	C	3.054e^-5	0.903	INTERGENIC
2R	12052704	2R_12052704_SNP [dm3] 2R_16165199_SNP [dm6]	C	T	3.085e^-5	0.903	INTRON lbk	TF binding site mE1_TFBS_HSA
2R	13023236	2R_13023236_SNP [dm3] 2R_17135731_SNP [dm6]	T	G	3.098e^-5	0.903	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
3R	25821908	3R_25821908_SNP [dm3] 3R_29996186_SNP [dm6]	T	A	3.138e^-5	0.903	NON_SYNONYMOUS_CODING Sas-6 UPSTREAM CG7903 DOWNSTREAM CG15525	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5777267	2R_5777267_SNP [dm3] 2R_9889762_SNP [dm6]	G	A	3.159e^-5	0.903	UPSTREAM CG30008 DOWNSTREAM CG12923 INTRON CG1513
2L	1235435	2L_1235435_SNP [dm3] 2L_1235435_SNP [dm6]	C	G	3.183e^-5	0.903	INTERGENIC
2R	13184183	2R_13184183_SNP [dm3] 2R_17296678_SNP [dm6]	A	G	3.489e^-5	0.903	INTRON mbl
2R	11330883	2R_11330883_SNP [dm3] 2R_15443378_SNP [dm6]	G	A	3.511e^-5	0.903	INTRON CG43729
2R	14961210	2R_14961210_SNP [dm3] 2R_19073705_SNP [dm6]	A	T	3.518e^-5	0.903	INTRON 5-HT1A
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	3.529e^-5	0.903	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
3L	10377578	3L_10377578_SNP [dm3] 3L_10384478_SNP [dm6]	A	C	3.624e^-5	0.903	INTERGENIC
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	3.644e^-5	0.903	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	3072980	2L_3072980_SNP [dm3] 2L_3072980_SNP [dm6]	T	G	3.661e^-5	0.903	UPSTREAM toc INTRON toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15983331	2R_15983331_SNP [dm3] 2R_20095826_SNP [dm6]	G	A	3.676e^-5	0.903	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13695954	2L_13695954_SNP [dm3] 2L_13695954_SNP [dm6]	C	T	3.685e^-5	0.903	INTRON CG31814
2L	10700305	2L_10700305_SNP [dm3] 2L_10700305_SNP [dm6]	C	T	3.810e^-5	0.903	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14004503	2L_14004503_SNP [dm3] 2L_14004503_SNP [dm6]	G	C	3.827e^-5	0.903	INTERGENIC
2R	5783305	2R_5783305_SNP [dm3] 2R_9895800_SNP [dm6]	C	A	3.888e^-5	0.903	NON_SYNONYMOUS_CODING CG30007
3L	3920070	3L_3920070_SNP [dm3] 3L_3920070_SNP [dm6]	T	A	3.912e^-5	0.903	INTRON Eip63F-1
2R	5884816	2R_5884816_SNP [dm3] 2R_9997311_SNP [dm6]	C	A	3.968e^-5	0.903	UTR_3_PRIME Pka-R2 INTRON Pka-R2
2R	5781559	2R_5781559_SNP [dm3] 2R_9894054_SNP [dm6]	C	T	3.993e^-5	0.903	NON_SYNONYMOUS_CODING CG30007
3R	25562517	3R_25562517_SNP [dm3] 3R_29736795_SNP [dm6]	T	A	4.029e^-5	0.903	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5762919	2R_5762919_SNP [dm3] 2R_9875414_SNP [dm6]	G	A	4.043e^-5	0.903	UTR_5_PRIME CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB INTRON CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1253848	3L_1253848_SNP [dm3] 3L_1253848_SNP [dm6]	T	A	4.046e^-5	0.903	UPSTREAM CG9133 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11798822	2R_11798822_SNP [dm3] 2R_15911317_SNP [dm6]	C	T	4.107e^-5	0.903	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12251907	2R_12251907_SNP [dm3] 2R_16364402_SNP [dm6]	T	A	4.227e^-5	0.903	START_GAINED CG15711 UTR_5_PRIME CG15711 UPSTREAM CG15711 DOWNSTREAM CG6262
2R	5760716	2R_5760716_SNP [dm3] 2R_9873211_SNP [dm6]	C	T	4.302e^-5	0.903	INTRON cbx & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_sens
3L	10377696	3L_10377696_DEL [dm3] 3L_10384596_DEL [dm6]	AA	A	4.354e^-5	0.903	INTERGENIC
3R	16763353	3R_16763353_SNP [dm3] 3R_20937631_SNP [dm6]	T	C	4.422e^-5	0.903	INTRON CG31191
2L	16500352	2L_16500352_SNP [dm3] 2L_16500352_SNP [dm6]	A	T	4.436e^-5	0.903	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3499286	2L_3499286_SNP [dm3] 2L_3499286_SNP [dm6]	G	A	4.458e^-5	0.903	INTRON tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	5780578	2R_5780578_SNP [dm3] 2R_9893073_SNP [dm6]	T	A	4.465e^-5	0.903	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
3L	10348915	3L_10348915_SNP [dm3] 3L_10355815_SNP [dm6]	T	C	4.475e^-5	0.903	INTRON CR44327
2L	11571336	2L_11571336_SNP [dm3] 2L_11571336_SNP [dm6]	C	A	4.525e^-5	0.903	INTERGENIC
2L	3933644	2L_3933644_SNP [dm3] 2L_3933644_SNP [dm6]	T	C	4.541e^-5	0.903	INTRON fred
2R	15659776	2R_15659776_SNP [dm3] 2R_19772271_SNP [dm6]	C	T	4.546e^-5	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13416712	2R_13416712_SNP [dm3] 2R_17529207_SNP [dm6]	G	T	4.582e^-5	0.903	INTRON Patronin
3L	18304679	3L_18304679_SNP [dm3] 3L_18311579_SNP [dm6]	T	A	4.589e^-5	0.903	INTERGENIC
3L	10378012	3L_10378012_SNP [dm3] 3L_10384912_SNP [dm6]	A	G	4.769e^-5	0.903	INTERGENIC
2L	1196053	2L_1196053_SNP [dm3] 2L_1196053_SNP [dm6]	C	T	4.800e^-5	0.903	INTRON CG5001
3L	18304678	3L_18304678_SNP [dm3] 3L_18311578_SNP [dm6]	A	G	4.841e^-5	0.903	INTERGENIC
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	4.884e^-5	0.903	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25562554	3R_25562554_SNP [dm3] 3R_29736832_SNP [dm6]	G	A	4.895e^-5	0.903	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	14993328	2R_14993328_SNP [dm3] 2R_19105823_SNP [dm6]	A	T	5.014e^-5	0.903	INTRON 5-HT1A
2R	15690713	2R_15690713_SNP [dm3] 2R_19803208_SNP [dm6]	C	G	5.042e^-5	0.903	DOWNSTREAM tRNA:K2:56EF INTERGENIC
2L	14004395	2L_14004395_SNP [dm3] 2L_14004395_SNP [dm6]	C	G	5.046e^-5	0.903	INTERGENIC
2L	16500353	2L_16500353_SNP [dm3] 2L_16500353_SNP [dm6]	G	C	5.072e^-5	0.903	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14743470	3R_14743470_INS [dm3] 3R_18917748_INS [dm6]	A	AA	5.098e^-5	0.903	UPSTREAM Xrp1 INTRON Xrp1	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	5.158e^-5	0.903	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
3L	7097308	3L_7097308_SNP [dm3] 3L_7104208_SNP [dm6]	A	G	5.244e^-5	0.903	INTRON form3
2R	13864914	2R_13864914_SNP [dm3] 2R_17977409_SNP [dm6]	C	T	5.361e^-5	0.903	INTRON dpr13
2R	12443070	2R_12443070_SNP [dm3] 2R_16555565_SNP [dm6]	T	A	5.388e^-5	0.903	INTRON Syn2
2R	18245408	2R_18245408_SNP [dm3] 2R_22357903_SNP [dm6]	A	G	5.409e^-5	0.903	INTRON Liprin-gamma	transposable element FlyBase
2L	14004485	2L_14004485_SNP [dm3] 2L_14004485_SNP [dm6]	C	T	5.455e^-5	0.903	INTERGENIC
2L	10704121	2L_10704121_SNP [dm3] 2L_10704121_SNP [dm6]	A	T	5.490e^-5	0.903	INTRON Lip2 & 1 other
2L	1228599	2L_1228599_SNP [dm3] 2L_1228599_SNP [dm6]	G	C	5.580e^-5	0.903	SYNONYMOUS_CODING CG42329
2R	16043504	2R_16043504_SNP [dm3] 2R_20155999_SNP [dm6]	C	A	5.586e^-5	0.903	INTERGENIC
X	8796211	X_8796211_SNP [dm3] X_8902178_SNP [dm6]	G	A	5.621e^-5	0.903	SYNONYMOUS_CODING Rbm13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25817054	3R_25817054_SNP [dm3] 3R_29991332_SNP [dm6]	G	A	5.668e^-5	0.903	UTR_3_PRIME Acph-1 DOWNSTREAM CG7896	TF binding site mE1_TFBS_cad
2L	14004501	2L_14004501_SNP [dm3] 2L_14004501_SNP [dm6]	G	A	5.712e^-5	0.903	INTERGENIC
2R	5783798	2R_5783798_SNP [dm3] 2R_9896293_SNP [dm6]	G	T	5.745e^-5	0.903	NON_SYNONYMOUS_CODING CG30007
2L	14004504	2L_14004504_SNP [dm3] 2L_14004504_SNP [dm6]	C	T	5.754e^-5	0.903	INTERGENIC
2R	11264129	2R_11264129_SNP [dm3] 2R_15376624_SNP [dm6]	A	C	5.928e^-5	0.903	UTR_3_PRIME dup UPSTREAM CR43105 & 1 other	TF binding site BDTNP1_TFBS_hb
2R	13023226	2R_13023226_SNP [dm3] 2R_17135721_SNP [dm6]	A	G	6.043e^-5	0.903	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
2R	17076809	2R_17076809_SNP [dm3] 2R_21189304_SNP [dm6]	G	C	6.050e^-5	0.903	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
X	9184557	X_9184557_SNP [dm3] X_9290524_SNP [dm6]	G	C	6.225e^-5	0.903	INTRON lz	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	20956570	2L_20956570_SNP [dm3] 2L_20956570_SNP [dm6]	G	A	6.242e^-5	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4678231	3R_4678231_SNP [dm3] 3R_8852509_SNP [dm6]	C	T	6.287e^-5	0.903	INTRON pyd
2L	1344206	2L_1344206_SNP [dm3] 2L_1344206_SNP [dm6]	A	T	6.307e^-5	0.903	UPSTREAM Cdlc2 & 1 other INTERGENIC
2R	6914114	2R_6914114_DEL [dm3] 2R_11026609_DEL [dm6]	TC	T	6.366e^-5	0.903	INTRON luna
2L	3072659	2L_3072659_SNP [dm3] 2L_3072659_SNP [dm6]	A	G	6.376e^-5	0.903	UPSTREAM toc INTRON toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13150872	2R_13150872_SNP [dm3] 2R_17263367_SNP [dm6]	C	A	6.414e^-5	0.903	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5762328	2R_5762328_SNP [dm3] 2R_9874823_SNP [dm6]	A	G	6.457e^-5	0.903	SPLICE_SITE_REGION cbx UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4429180	3L_4429180_SNP [dm3] 3L_4429180_SNP [dm6]	T	C	6.541e^-5	0.903	UPSTREAM nAChRbeta1 INTERGENIC	regulatory region REDfly_CRMs
2L	13560078	2L_13560078_INS [dm3] 2L_13560078_INS [dm6]	C	CT	6.562e^-5	0.903	INTRON kuz
2R	13150543	2R_13150543_SNP [dm3] 2R_17263038_SNP [dm6]	G	C	6.595e^-5	0.903	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	15506015	2L_15506015_SNP [dm3] 2L_15506015_SNP [dm6]	A	G	6.627e^-5	0.903	DOWNSTREAM lace INTERGENIC
2L	14004418	2L_14004418_SNP [dm3] 2L_14004418_SNP [dm6]	G	A	6.683e^-5	0.903	INTERGENIC
3L	16565938	3L_16565938_SNP [dm3] 3L_16572838_SNP [dm6]	T	A	6.707e^-5	0.903	UPSTREAM Mipp1 INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3891023	2L_3891023_SNP [dm3] 2L_3891023_SNP [dm6]	T	C	6.757e^-5	0.903	UPSTREAM capu INTRON capu
2R	18015452	2R_18015452_SNP [dm3] 2R_22127947_SNP [dm6]	A	G	6.778e^-5	0.903	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad
2L	14187174	2L_14187174_SNP [dm3] 2L_14187174_SNP [dm6]	G	A	6.799e^-5	0.903	INTRON Dyrk2	TF binding site mE1_TFBS_cad
3R	25562591	3R_25562591_SNP [dm3] 3R_29736869_SNP [dm6]	A	G	6.810e^-5	0.903	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	2872500	3R_2872500_SNP [dm3] 3R_7046778_SNP [dm6]	A	G	6.845e^-5	0.903	INTERGENIC
3R	25823914	3R_25823914_SNP [dm3] 3R_29998192_SNP [dm6]	C	T	6.855e^-5	0.903	UTR_5_PRIME CG11504 UPSTREAM CG15525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8885658	3L_8885658_SNP [dm3] 3L_8892558_SNP [dm6]	C	T	6.912e^-5	0.903	SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_twi
2R	12102266	2R_12102266_DEL [dm3] 2R_16214761_DEL [dm6]	TTTCTT	T	6.934e^-5	0.903	INTRON mrj
3L	14289841	3L_14289841_SNP [dm3] 3L_14296741_SNP [dm6]	T	G	6.989e^-5	0.903	INTRON fz
3L	8914240	3L_8914240_SNP [dm3] 3L_8921140_SNP [dm6]	G	A	7.149e^-5	0.903	INTRON Tsp66E
2L	17230276	2L_17230276_SNP [dm3] 2L_17230276_SNP [dm6]	C	A	7.176e^-5	0.903	INTRON beat-IIIc
3R	17099112	3R_17099112_SNP [dm3] 3R_21273390_SNP [dm6]	C	T	7.178e^-5	0.903	SYNONYMOUS_CODING CG3308 DOWNSTREAM CG3301	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17230378	2L_17230378_SNP [dm3] 2L_17230378_SNP [dm6]	T	G	7.193e^-5	0.903	INTRON beat-IIIc
2L	10704084	2L_10704084_SNP [dm3] 2L_10704084_SNP [dm6]	A	G	7.203e^-5	0.903	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2
3L	22142265	3L_22142265_SNP [dm3] 3L_22149165_SNP [dm6]	G	T	7.383e^-5	0.903	INTRON olf413
3R	17098770	3R_17098770_SNP [dm3] 3R_21273048_SNP [dm6]	T	A	7.429e^-5	0.903	INTRON CG3308	TF binding site BDTNP1_TFBS_dl
2L	13675981	2L_13675981_SNP [dm3] 2L_13675981_SNP [dm6]	T	C	7.436e^-5	0.903	DOWNSTREAM CG31814 INTERGENIC
2R	18260478	2R_18260478_SNP [dm3] 2R_22372973_SNP [dm6]	C	T	7.602e^-5	0.903	UTR_5_PRIME Liprin-gamma DOWNSTREAM CR44759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26105331	3R_26105331_SNP [dm3] 3R_30279609_SNP [dm6]	T	C	7.649e^-5	0.903	SYNONYMOUS_CODING hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7996663	2L_7996663_SNP [dm3] 2L_7996663_SNP [dm6]	T	C	7.733e^-5	0.903	SYNONYMOUS_CODING CG7227 DOWNSTREAM CR44996
2L	8519679	2L_8519679_SNP [dm3] 2L_8519679_SNP [dm6]	T	C	7.757e^-5	0.903	UPSTREAM CG13091 DOWNSTREAM CG13090 INTERGENIC
2R	15383264	2R_15383264_SNP [dm3] 2R_19495759_SNP [dm6]	C	T	7.845e^-5	0.903	SYNONYMOUS_CODING hpo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12251727	2R_12251727_SNP [dm3] 2R_16364222_SNP [dm6]	A	G	7.888e^-5	0.903	UTR_5_PRIME CG15711 DOWNSTREAM CG6262
2L	12528894	2L_12528894_SNP [dm3] 2L_12528894_SNP [dm6]	A	G	7.901e^-5	0.903	INTRON bun	TF binding site BDTNP1_TFBS_dl
2R	11330866	2R_11330866_DEL [dm3] 2R_15443361_DEL [dm6]	ATG	A	7.984e^-5	0.903	INTRON CG43729
3R	23019195	3R_23019195_SNP [dm3] 3R_27193473_SNP [dm6]	C	T	8.100e^-5	0.903	INTRON Ser	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	12712526	2R_12712526_SNP [dm3] 2R_16825021_SNP [dm6]	C	G	8.163e^-5	0.903	UPSTREAM CG34459 INTRON CG34459
3R	12314820	3R_12314820_SNP [dm3] 3R_16489098_SNP [dm6]	T	C	8.169e^-5	0.903	SYNONYMOUS_CODING Cad89D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12144917	2R_12144917_SNP [dm3] 2R_16257412_SNP [dm6]	G	A	8.213e^-5	0.903	INTRON CngA
2R	5780076	2R_5780076_SNP [dm3] 2R_9892571_SNP [dm6]	A	G	8.245e^-5	0.903	UPSTREAM CG1513 INTRON CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3766402	3L_3766402_SNP [dm3] 3L_3766402_SNP [dm6]	T	C	8.313e^-5	0.903	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20508781	3R_20508781_SNP [dm3] 3R_24683059_SNP [dm6]	A	C	8.400e^-5	0.903	INTRON slo
2R	12052607	2R_12052607_SNP [dm3] 2R_16165102_SNP [dm6]	C	T	8.427e^-5	0.903	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_HSA
2R	16043448	2R_16043448_SNP [dm3] 2R_20155943_SNP [dm6]	T	A	8.543e^-5	0.903	INTERGENIC
3R	13556507	3R_13556507_SNP [dm3] 3R_17730785_SNP [dm6]	A	G	8.571e^-5	0.903	SYNONYMOUS_CODING Lgr1
2R	13965150	2R_13965150_SNP [dm3] 2R_18077645_SNP [dm6]	C	G	8.582e^-5	0.903	INTRON CG34386
3L	8386486	3L_8386486_SNP [dm3] 3L_8393386_SNP [dm6]	G	C	8.619e^-5	0.903	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	18361239	2R_18361239_SNP [dm3] 2R_22473734_SNP [dm6]	G	A	8.832e^-5	0.903	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18349556	2R_18349556_SNP [dm3] 2R_22462051_SNP [dm6]	C	T	8.835e^-5	0.903	INTRON CG10384
2L	9098562	2L_9098562_SNP [dm3] 2L_9098562_SNP [dm6]	C	A	8.851e^-5	0.903	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
2L	1344207	2L_1344207_DEL [dm3] 2L_1344207_DEL [dm6]	AAATATT	A	8.980e^-5	0.903	UPSTREAM Cdlc2 & 1 other INTERGENIC
2L	7801656	2L_7801656_INS [dm3] 2L_7801656_INS [dm6]	T	TT	8.994e^-5	0.903	UTR_3_PRIME r2d2 DOWNSTREAM cdc14 & 1 other
2L	12384592	2L_12384592_SNP [dm3] 2L_12384592_SNP [dm6]	A	C	9.032e^-5	0.903	INTRON bru-2
3L	944122	3L_944122_SNP [dm3] 3L_944122_SNP [dm6]	G	A	9.154e^-5	0.903	INTRON Glut1
2R	13183128	2R_13183128_SNP [dm3] 2R_17295623_SNP [dm6]	T	C	9.244e^-5	0.903	INTRON mbl
3L	13034928	3L_13034928_SNP [dm3] 3L_13041828_SNP [dm6]	C	T	9.309e^-5	0.903	UTR_5_PRIME RpS4 UPSTREAM snoRNA:Psi28S-3327a DOWNSTREAM SRm160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	13184459	2R_13184459_SNP [dm3] 2R_17296954_SNP [dm6]	G	C	9.357e^-5	0.903	INTRON mbl
2R	13996704	2R_13996704_SNP [dm3] 2R_18109199_SNP [dm6]	A	T	9.371e^-5	0.903	UPSTREAM CG5756 & 1 other INTERGENIC
2L	5382237	2L_5382237_SNP [dm3] 2L_5382237_SNP [dm6]	T	C	9.492e^-5	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11661913	3R_11661913_SNP [dm3] 3R_15836191_SNP [dm6]	G	A	9.643e^-5	0.903	SYNONYMOUS_CODING ND23 DOWNSTREAM mir-4911 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	9329565	3L_9329565_SNP [dm3] 3L_9336465_SNP [dm6]	G	T	9.761e^-5	0.903	INTRON PGRP-LA
2L	14187056	2L_14187056_SNP [dm3] 2L_14187056_SNP [dm6]	C	T	9.791e^-5	0.903	SYNONYMOUS_CODING Dyrk2	TF binding site mE1_TFBS_cad
2R	15669122	2R_15669122_SNP [dm3] 2R_19781617_SNP [dm6]	A	T	9.839e^-5	0.903	INTERGENIC
3L	16581485	3L_16581485_SNP [dm3] 3L_16588385_SNP [dm6]	G	A	9.881e^-5	0.903	UPSTREAM l_3_73Ah DOWNSTREAM CG32163 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	14188991	2L_14188991_SNP [dm3] 2L_14188991_SNP [dm6]	A	G	1.002e^-4	0.903	SYNONYMOUS_CODING Dyrk2
3R	25820193	3R_25820193_SNP [dm3] 3R_29994471_SNP [dm6]	G	A	1.016e^-4	0.903	SYNONYMOUS_CODING CG7903 UPSTREAM Sas-6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	3791180	2L_3791180_SNP [dm3] 2L_3791180_SNP [dm6]	T	C	1.030e^-4	0.903	INTRON CG3921
3L	12892441	3L_12892441_SNP [dm3] 3L_12899341_SNP [dm6]	A	G	1.043e^-4	0.903	INTERGENIC
2L	11571461	2L_11571461_SNP [dm3] 2L_11571461_SNP [dm6]	C	T	1.049e^-4	0.903	INTERGENIC
2R	12252148	2R_12252148_SNP [dm3] 2R_16364643_SNP [dm6]	C	T	1.054e^-4	0.903	UTR_5_PRIME CG15711 UPSTREAM CG15711
2R	15690575	2R_15690575_SNP [dm3] 2R_19803070_SNP [dm6]	C	T	1.054e^-4	0.903	DOWNSTREAM tRNA:K2:56EF INTERGENIC
2L	16543887	2L_16543887_SNP [dm3] 2L_16543887_SNP [dm6]	C	A	1.056e^-4	0.903	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	16544079	2L_16544079_INS [dm3] 2L_16544079_INS [dm6]	A	AATAA	1.067e^-4	0.903	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	16763338	3R_16763338_SNP [dm3] 3R_20937616_SNP [dm6]	T	C	1.084e^-4	0.903	INTRON CG31191
2R	9165381	2R_9165381_SNP [dm3] 2R_13277876_SNP [dm6]	T	C	1.089e^-4	0.903	INTRON Dh31-R
2R	11152509	2R_11152509_DEL [dm3] 2R_15265004_DEL [dm6]	AGTACG	A	1.097e^-4	0.903	INTRON Trpm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12008608	2R_12008608_SNP [dm3] 2R_16121103_SNP [dm6]	G	A	1.098e^-4	0.903	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2L	13560082	2L_13560082_SNP [dm3] 2L_13560082_SNP [dm6]	G	T	1.118e^-4	0.903	INTRON kuz
2L	3210619	2L_3210619_SNP [dm3] 2L_3210619_SNP [dm6]	A	T	1.125e^-4	0.903	EXON CR45336
2R	16001006	2R_16001006_SNP [dm3] 2R_20113501_SNP [dm6]	C	T	1.129e^-4	0.903	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7682878	2R_7682878_SNP [dm3] 2R_11795373_SNP [dm6]	A	C	1.136e^-4	0.903	INTRON ths	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	16562689	3L_16562689_SNP [dm3] 3L_16569589_SNP [dm6]	C	G	1.148e^-4	0.903	INTRON Mipp1
2L	1218435	2L_1218435_INS [dm3] 2L_1218435_INS [dm6]	T	TG	1.150e^-4	0.903	UPSTREAM CR43263 & 1 other INTERGENIC
2R	6827701	2R_6827701_SNP [dm3] 2R_10940196_SNP [dm6]	C	A	1.160e^-4	0.903	UTR_3_PRIME Spn47C	transposable element FlyBase
3R	15484962	3R_15484962_SNP [dm3] 3R_19659240_SNP [dm6]	C	T	1.169e^-4	0.903	UPSTREAM ort INTERGENIC
2R	12052705	2R_12052705_SNP [dm3] 2R_16165200_SNP [dm6]	A	C	1.172e^-4	0.903	INTRON lbk	TF binding site mE1_TFBS_HSA
2R	20477507	2R_20477507_SNP [dm3] 2R_24589984_SNP [dm6]	G	A	1.173e^-4	0.903	INTRON pio
2R	9165054	2R_9165054_SNP [dm3] 2R_13277549_SNP [dm6]	G	A	1.181e^-4	0.903	NON_SYNONYMOUS_CODING Dh31-R
3R	11291926	3R_11291926_SNP [dm3] 3R_15466204_SNP [dm6]	C	G	1.198e^-4	0.903	INTRON AdamTS-A
2R	12559224	2R_12559224_SNP [dm3] 2R_16671719_SNP [dm6]	A	T	1.198e^-4	0.903	UTR_3_PRIME CG34457 UPSTREAM CG34458
3R	21791448	3R_21791448_SNP [dm3] 3R_25965726_SNP [dm6]	T	C	1.199e^-4	0.903	SYNONYMOUS_CODING boss	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12822916	2R_12822916_SNP [dm3] 2R_16935411_SNP [dm6]	G	A	1.219e^-4	0.903	INTRON Pkc53E
3L	20551519	3L_20551519_SNP [dm3] 3L_20558419_SNP [dm6]	A	G	1.224e^-4	0.903	INTERGENIC
2R	13183428	2R_13183428_SNP [dm3] 2R_17295923_SNP [dm6]	A	G	1.230e^-4	0.903	INTRON mbl
2R	13183429	2R_13183429_SNP [dm3] 2R_17295924_SNP [dm6]	A	G	1.230e^-4	0.903	INTRON mbl
2L	10700282	2L_10700282_SNP [dm3] 2L_10700282_SNP [dm6]	T	C	1.233e^-4	0.903	INTRON Lip1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5510542	3L_5510542_SNP [dm3] 3L_5517442_SNP [dm6]	T	G	1.234e^-4	0.903	INTRON Lkr
3L	6913158	3L_6913158_SNP [dm3] 3L_6920058_SNP [dm6]	G	T	1.242e^-4	0.903	INTERGENIC
2L	10704096	2L_10704096_SNP [dm3] 2L_10704096_SNP [dm6]	T	A	1.247e^-4	0.903	INTRON Lip2 & 1 other
3R	25563247	3R_25563247_SNP [dm3] 3R_29737525_SNP [dm6]	T	C	1.247e^-4	0.903	UPSTREAM CG7601 & 1 other INTRON CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	13183160	2R_13183160_SNP [dm3] 2R_17295655_SNP [dm6]	T	A	1.247e^-4	0.903	INTRON mbl
2L	13908747	2L_13908747_SNP [dm3] 2L_13908747_SNP [dm6]	T	C	1.248e^-4	0.903	SYNONYMOUS_CODING Ance UPSTREAM Ance-2	TF binding site mE1_TFBS_cad
2R	5735871	2R_5735871_SNP [dm3] 2R_9848366_SNP [dm6]	G	T	1.256e^-4	0.903	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3766591	3L_3766591_SNP [dm3] 3L_3766591_SNP [dm6]	G	A	1.259e^-4	0.903	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6213471	2R_6213471_SNP [dm3] 2R_10325966_SNP [dm6]	G	C	1.263e^-4	0.903	INTRON CG42732
3L	11848993	3L_11848993_SNP [dm3] 3L_11855893_SNP [dm6]	T	A	1.269e^-4	0.903	INTRON CG44837
3R	16524088	3R_16524088_SNP [dm3] 3R_20698366_SNP [dm6]	T	C	1.272e^-4	0.903	SYNONYMOUS_CODING Oamb	TF binding site mE1_TFBS_cad
2L	1260116	2L_1260116_SNP [dm3] 2L_1260116_SNP [dm6]	T	G	1.277e^-4	0.903	INTRON robo3	TF binding site mE1_TFBS_Kr
2L	9731608	2L_9731608_SNP [dm3] 2L_9731608_SNP [dm6]	G	A	1.281e^-4	0.903	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11021644	3L_11021644_SNP [dm3] 3L_11028544_SNP [dm6]	G	C	1.297e^-4	0.903	SYNONYMOUS_CODING CG32081	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11264113	2R_11264113_SNP [dm3] 2R_15376608_SNP [dm6]	G	T	1.297e^-4	0.903	UPSTREAM CR43105 & 1 other DOWNSTREAM dup INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	13949532	2L_13949532_SNP [dm3] 2L_13949532_SNP [dm6]	A	T	1.300e^-4	0.903	INTRON Ance-3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15074805	2R_15074805_SNP [dm3] 2R_19187300_SNP [dm6]	G	C	1.304e^-4	0.903	INTRON hppy
3L	14189444	3L_14189444_SNP [dm3] 3L_14196344_SNP [dm6]	A	G	1.306e^-4	0.903	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18564762	3L_18564762_SNP [dm3] 3L_18571662_SNP [dm6]	G	T	1.311e^-4	0.903	INTRON AstC-R1
2R	13183205	2R_13183205_INS [dm3] 2R_17295700_INS [dm6]	T	TTCATT	1.311e^-4	0.903	INTRON mbl
X	19709949	X_19709949_SNP [dm3] X_19815916_SNP [dm6]	G	A	1.314e^-4	0.903	UPSTREAM skpC INTERGENIC
2R	13184218	2R_13184218_SNP [dm3] 2R_17296713_SNP [dm6]	A	C	1.315e^-4	0.903	INTRON mbl
3R	9697894	3R_9697894_SNP [dm3] 3R_13872172_SNP [dm6]	G	A	1.316e^-4	0.903	INTRON E5
2L	5514731	2L_5514731_SNP [dm3] 2L_5514731_SNP [dm6]	G	C	1.317e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3418939	3L_3418939_SNP [dm3] 3L_3418939_SNP [dm6]	T	A	1.327e^-4	0.903	UPSTREAM sty INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8467841	2R_8467841_SNP [dm3] 2R_12580336_SNP [dm6]	G	A	1.337e^-4	0.903	NON_SYNONYMOUS_CODING Sin3A
2L	8506924	2L_8506924_SNP [dm3] 2L_8506924_SNP [dm6]	G	A	1.339e^-4	0.903	UPSTREAM Dh31 INTERGENIC
2R	21019195	2R_21019195_SNP [dm3] 2R_25131672_SNP [dm6]	G	T	1.339e^-4	0.903	INTRON lov
2L	14004423	2L_14004423_SNP [dm3] 2L_14004423_SNP [dm6]	T	C	1.347e^-4	0.903	INTERGENIC
2R	11191055	2R_11191055_SNP [dm3] 2R_15303550_SNP [dm6]	G	A	1.351e^-4	0.903	INTRON Trpm
X	20157137	X_20157137_SNP [dm3] X_20286110_SNP [dm6]	A	T	1.354e^-4	0.903	INTERGENIC
3L	3766419	3L_3766419_SNP [dm3] 3L_3766419_SNP [dm6]	G	A	1.362e^-4	0.903	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10377546	3L_10377546_SNP [dm3] 3L_10384446_SNP [dm6]	A	C	1.362e^-4	0.903	INTERGENIC
2R	16693693	2R_16693693_DEL [dm3] 2R_20806188_DEL [dm6]	TAA	T	1.363e^-4	0.903	INTERGENIC
2R	5784731	2R_5784731_SNP [dm3] 2R_9897226_SNP [dm6]	C	A	1.363e^-4	0.903	NON_SYNONYMOUS_CODING CG30007
3L	5917790	3L_5917790_SNP [dm3] 3L_5924690_SNP [dm6]	T	A	1.364e^-4	0.903	INTRON Vap-33B
3R	12253281	3R_12253281_SNP [dm3] 3R_16427559_SNP [dm6]	T	G	1.368e^-4	0.903	UPSTREAM CR45631 INTERGENIC	regulatory region REDfly_CRMs
3L	7011895	3L_7011895_SNP [dm3] 3L_7018795_SNP [dm6]	C	G	1.374e^-4	0.903	INTRON Mp
3L	3767878	3L_3767878_SNP [dm3] 3L_3767878_SNP [dm6]	T	A	1.400e^-4	0.903	INTRON CG32264	TF binding site mE1_TFBS_bab1
2L	2893660	2L_2893660_SNP [dm3] 2L_2893660_SNP [dm6]	A	G	1.403e^-4	0.903	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15458384	2L_15458384_SNP [dm3] 2L_15458384_SNP [dm6]	T	C	1.404e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10895491	3L_10895491_SNP [dm3] 3L_10902391_SNP [dm6]	C	T	1.415e^-4	0.903	INTERGENIC
3R	7590928	3R_7590928_SNP [dm3] 3R_11765206_SNP [dm6]	A	C	1.417e^-4	0.903	UTR_3_PRIME l_3_neo38 UPSTREAM Lk6	TF binding site BDTNP1_TFBS_dl
2R	15707721	2R_15707721_SNP [dm3] 2R_19820216_SNP [dm6]	A	G	1.421e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
3L	10377566	3L_10377566_SNP [dm3] 3L_10384466_SNP [dm6]	A	C	1.422e^-4	0.903	INTERGENIC
3L	14844619	3L_14844619_SNP [dm3] 3L_14851519_SNP [dm6]	G	T	1.426e^-4	0.903	INTRON CG17839
3L	3766825	3L_3766825_DEL [dm3] 3L_3766825_DEL [dm6]	TT	T	1.427e^-4	0.903	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	20135625	2R_20135625_SNP [dm3] 2R_24248102_SNP [dm6]	G	A	1.430e^-4	0.903	DOWNSTREAM Ir60a INTRON nord
3L	3767130	3L_3767130_SNP [dm3] 3L_3767130_SNP [dm6]	C	A	1.441e^-4	0.903	SPLICE_SITE_REGION CG32264 INTRON CG32264	TF binding site mE1_TFBS_bab1
3R	23474601	3R_23474601_SNP [dm3] 3R_27648879_SNP [dm6]	A	T	1.445e^-4	0.903	NON_SYNONYMOUS_CODING tau INTRON tau
2R	10656691	2R_10656691_INS [dm3] 2R_14769186_INS [dm6]	A	ACA	1.446e^-4	0.903	DOWNSTREAM CG42254 INTRON Spred	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25818024	3R_25818024_SNP [dm3] 3R_29992302_SNP [dm6]	A	G	1.449e^-4	0.903	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1604282	3L_1604282_SNP [dm3] 3L_1604282_SNP [dm6]	C	T	1.458e^-4	0.903	SYNONYMOUS_CODING CG18170 START_GAINED CG33791 UTR_5_PRIME CG33791 UPSTREAM CG33791
2L	17331276	2L_17331276_SNP [dm3] 2L_17331276_SNP [dm6]	C	T	1.461e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	9102964	3L_9102964_SNP [dm3] 3L_9109864_SNP [dm6]	G	A	1.463e^-4	0.903	INTRON bol
2R	12558935	2R_12558935_SNP [dm3] 2R_16671430_SNP [dm6]	G	A	1.469e^-4	0.903	SYNONYMOUS_CODING CG34457 UPSTREAM CG34458	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	4815277	3R_4815277_SNP [dm3] 3R_8989555_SNP [dm6]	A	T	1.470e^-4	0.903	NON_SYNONYMOUS_CODING CG11970
2R	13184445	2R_13184445_SNP [dm3] 2R_17296940_SNP [dm6]	T	G	1.477e^-4	0.903	INTRON mbl
3R	22696118	3R_22696118_SNP [dm3] 3R_26870396_SNP [dm6]	T	C	1.484e^-4	0.903	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	13977497	X_13977497_SNP [dm3] X_14083464_SNP [dm6]	T	A	1.492e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5510537	3L_5510537_SNP [dm3] 3L_5517437_SNP [dm6]	T	A	1.496e^-4	0.903	INTRON Lkr
2R	14043373	2R_14043373_SNP [dm3] 2R_18155868_SNP [dm6]	G	C	1.500e^-4	0.903	INTRON lolal	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	20987505	2R_20987505_SNP [dm3] 2R_25099982_SNP [dm6]	C	T	1.510e^-4	0.903	UPSTREAM lov INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15768682	2R_15768682_SNP [dm3] 2R_19881177_SNP [dm6]	T	G	1.511e^-4	0.903	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	15582957	3R_15582957_SNP [dm3] 3R_19757235_SNP [dm6]	G	A	1.525e^-4	0.903	INTRON GluClalpha
3R	7590909	3R_7590909_SNP [dm3] 3R_11765187_SNP [dm6]	A	G	1.525e^-4	0.903	UTR_3_PRIME l_3_neo38 UPSTREAM Lk6	TF binding site BDTNP1_TFBS_dl
2L	14004531	2L_14004531_DEL [dm3] 2L_14004531_DEL [dm6]	TCTCT	T	1.526e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12385892	2L_12385892_SNP [dm3] 2L_12385892_SNP [dm6]	T	C	1.526e^-4	0.903	INTRON bru-2
3L	16349941	3L_16349941_SNP [dm3] 3L_16356841_SNP [dm6]	A	G	1.532e^-4	0.903	UPSTREAM CG45057 INTRON CG45057
2L	13997616	2L_13997616_SNP [dm3] 2L_13997616_SNP [dm6]	T	A	1.537e^-4	0.903	INTRON rk
3R	24350631	3R_24350631_DEL [dm3] 3R_28524909_DEL [dm6]	GAGG	G	1.558e^-4	0.903	CODON_DELETION Ppn INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12144915	2R_12144915_SNP [dm3] 2R_16257410_SNP [dm6]	T	C	1.563e^-4	0.903	INTRON CngA
3L	10378455	3L_10378455_SNP [dm3] 3L_10385355_SNP [dm6]	A	T	1.573e^-4	0.903	INTERGENIC
2L	5386168	2L_5386168_SNP [dm3] 2L_5386168_SNP [dm6]	C	T	1.583e^-4	0.903	INTERGENIC
2L	8316132	2L_8316132_SNP [dm3] 2L_8316132_SNP [dm6]	C	T	1.586e^-4	0.903	SPLICE_SITE_REGION CG7806 DOWNSTREAM mtsh INTRON CG7806
3L	4144272	3L_4144272_SNP [dm3] 3L_4144272_SNP [dm6]	A	T	1.595e^-4	0.903	INTRON CG32260
2R	21018743	2R_21018743_DEL [dm3] 2R_25131220_DEL [dm6]	GCCG	G	1.596e^-4	0.903	INTRON lov
2L	1344223	2L_1344223_SNP [dm3] 2L_1344223_SNP [dm6]	G	A	1.597e^-4	0.903	UPSTREAM Cdlc2 & 1 other INTERGENIC
2L	7501547	2L_7501547_SNP [dm3] 2L_7501547_SNP [dm6]	G	C	1.597e^-4	0.903	INTRON RapGAP1	TF binding site mE1_TFBS_cad
2R	6916972	2R_6916972_SNP [dm3] 2R_11029467_SNP [dm6]	C	G	1.598e^-4	0.903	INTRON luna	TF binding site mE1_TFBS_chinmo
3L	10848239	3L_10848239_SNP [dm3] 3L_10855139_SNP [dm6]	G	A	1.598e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14843008	3L_14843008_SNP [dm3] 3L_14849908_SNP [dm6]	T	G	1.598e^-4	0.903	INTRON CG17839
3L	11063362	3L_11063362_INS [dm3] 3L_11070262_INS [dm6]	T	ATTTATATCAGTAACTA...	1.606e^-4	0.903	UPSTREAM Mocs1 & 1 other INTERGENIC
2R	11795550	2R_11795550_SNP [dm3] 2R_15908045_SNP [dm6]	G	A	1.618e^-4	0.903	INTRON sli
2L	17332851	2L_17332851_SNP [dm3] 2L_17332851_SNP [dm6]	G	A	1.624e^-4	0.903	INTERGENIC
2L	9827465	2L_9827465_SNP [dm3] 2L_9827465_SNP [dm6]	A	C	1.641e^-4	0.903	INTRON nAChRalpha6
3L	5510321	3L_5510321_INS [dm3] 3L_5517221_INS [dm6]	T	TT	1.646e^-4	0.903	INTRON Lkr
3L	20727174	3L_20727174_SNP [dm3] 3L_20734074_SNP [dm6]	C	G	1.658e^-4	0.903	INTRON CG13252
3L	14866512	3L_14866512_SNP [dm3] 3L_14873412_SNP [dm6]	C	A	1.658e^-4	0.903	INTRON CG17839
2L	3893970	2L_3893970_DEL [dm3] 2L_3893970_DEL [dm6]	AA	A	1.659e^-4	0.903	INTRON capu
3R	8687553	3R_8687553_SNP [dm3] 3R_12861831_SNP [dm6]	A	G	1.668e^-4	0.903	INTERGENIC
3L	3677593	3L_3677593_SNP [dm3] 3L_3677593_SNP [dm6]	G	C	1.676e^-4	0.903	INTERGENIC
3L	4730581	3L_4730581_SNP [dm3] 3L_4730581_SNP [dm6]	T	G	1.683e^-4	0.903	INTRON RhoGEF64C
3L	16575441	3L_16575441_SNP [dm3] 3L_16582341_SNP [dm6]	G	A	1.703e^-4	0.903	UPSTREAM Smn & 1 other EXON CR43727	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	15071554	2R_15071554_SNP [dm3] 2R_19184049_SNP [dm6]	G	A	1.711e^-4	0.903	INTRON hppy
X	19098921	X_19098921_SNP [dm3] X_19204888_SNP [dm6]	G	A	1.713e^-4	0.903	SYNONYMOUS_CODING Ulp1
3R	26129324	3R_26129324_SNP [dm3] 3R_30303602_SNP [dm6]	T	A	1.716e^-4	0.903	INTRON hdc
3R	19659897	3R_19659897_SNP [dm3] 3R_23834175_SNP [dm6]	A	C	1.721e^-4	0.903	INTRON CG34355
3L	3767125	3L_3767125_SNP [dm3] 3L_3767125_SNP [dm6]	G	A	1.724e^-4	0.903	INTRON CG32264	TF binding site mE1_TFBS_bab1
3L	10378486	3L_10378486_SNP [dm3] 3L_10385386_SNP [dm6]	G	A	1.729e^-4	0.903	INTERGENIC
2L	19388889	2L_19388889_SNP [dm3] 2L_19388889_SNP [dm6]	T	A	1.731e^-4	0.903	INTRON CG17549
2R	11266316	2R_11266316_SNP [dm3] 2R_15378811_SNP [dm6]	T	G	1.737e^-4	0.903	INTRON dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18544286	2R_18544286_SNP [dm3] 2R_22656781_SNP [dm6]	G	T	1.742e^-4	0.903	SYNONYMOUS_CODING CG43325 UTR_5_PRIME CG43326 UPSTREAM CG43326 DOWNSTREAM CR45268	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	6924571	2R_6924571_SNP [dm3] 2R_11037066_SNP [dm6]	T	C	1.778e^-4	0.903	INTRON luna
3L	10378474	3L_10378474_SNP [dm3] 3L_10385374_SNP [dm6]	T	C	1.778e^-4	0.903	INTERGENIC
2R	5887635	2R_5887635_SNP [dm3] 2R_10000130_SNP [dm6]	G	T	1.779e^-4	0.903	INTRON Pka-R2
3L	14473119	3L_14473119_SNP [dm3] 3L_14480019_SNP [dm6]	T	A	1.784e^-4	0.903	INTRON bbg
2L	1278326	2L_1278326_SNP [dm3] 2L_1278326_SNP [dm6]	A	G	1.788e^-4	0.903	INTRON robo3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5763531	2R_5763531_SNP [dm3] 2R_9876026_SNP [dm6]	C	T	1.794e^-4	0.903	SYNONYMOUS_CODING CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9714504	3R_9714504_INS [dm3] 3R_13888782_INS [dm6]	GGA	AATT	1.803e^-4	0.903	INTERGENIC
3L	10378204	3L_10378204_SNP [dm3] 3L_10385104_SNP [dm6]	A	G	1.805e^-4	0.903	INTERGENIC
2L	1245080	2L_1245080_SNP [dm3] 2L_1245080_SNP [dm6]	G	A	1.824e^-4	0.903	INTERGENIC
X	12261503	X_12261503_SNP [dm3] X_12367470_SNP [dm6]	A	G	1.843e^-4	0.903	INTERGENIC
2L	10544743	2L_10544743_SNP [dm3] 2L_10544743_SNP [dm6]	G	T	1.847e^-4	0.903	UPSTREAM Trim9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17078383	2R_17078383_SNP [dm3] 2R_21190878_SNP [dm6]	T	C	1.848e^-4	0.903	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17078548	2R_17078548_SNP [dm3] 2R_21191043_SNP [dm6]	G	A	1.848e^-4	0.903	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14188359	2L_14188359_SNP [dm3] 2L_14188359_SNP [dm6]	G	A	1.851e^-4	0.903	INTRON Dyrk2
3R	16763110	3R_16763110_SNP [dm3] 3R_20937388_SNP [dm6]	A	G	1.852e^-4	0.903	INTRON CG31191
3L	10848245	3L_10848245_DEL [dm3] 3L_10855145_DEL [dm6]	AACATGTAAAATACAAA...	A	1.856e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1199481	3L_1199481_SNP [dm3] 3L_1199481_SNP [dm6]	G	A	1.856e^-4	0.903	DOWNSTREAM Aplip1 INTERGENIC
3R	16508087	3R_16508087_SNP [dm3] 3R_20682365_SNP [dm6]	A	C	1.858e^-4	0.903	INTERGENIC
3L	16347360	3L_16347360_SNP [dm3] 3L_16354260_SNP [dm6]	G	A	1.865e^-4	0.903	NON_SYNONYMOUS_CODING Pdh UTR_5_PRIME Pdh DOWNSTREAM CG4933 & 1 other
3R	13466615	3R_13466615_SNP [dm3] 3R_17640893_SNP [dm6]	T	A	1.869e^-4	0.903	INTRON CG43175
2R	11191044	2R_11191044_SNP [dm3] 2R_15303539_SNP [dm6]	A	G	1.871e^-4	0.903	INTRON Trpm
2L	8389266	2L_8389266_SNP [dm3] 2L_8389266_SNP [dm6]	G	A	1.873e^-4	0.903	NON_SYNONYMOUS_CODING CG42819 UPSTREAM snRNA:U6atac:29B DOWNSTREAM CG13384 & 1 other
3L	3767128	3L_3767128_SNP [dm3] 3L_3767128_SNP [dm6]	G	T	1.880e^-4	0.903	INTRON CG32264	TF binding site mE1_TFBS_bab1
3L	5917805	3L_5917805_SNP [dm3] 3L_5924705_SNP [dm6]	C	T	1.883e^-4	0.903	INTRON Vap-33B
3R	23263348	3R_23263348_SNP [dm3] 3R_27437626_SNP [dm6]	C	G	1.883e^-4	0.903	UPSTREAM side INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3887036	2L_3887036_SNP [dm3] 2L_3887036_SNP [dm6]	G	T	1.889e^-4	0.903	SYNONYMOUS_CODING capu INTRON capu
3L	16349938	3L_16349938_SNP [dm3] 3L_16356838_SNP [dm6]	T	A	1.891e^-4	0.903	UPSTREAM CG45057 INTRON CG45057
2R	5784919	2R_5784919_SNP [dm3] 2R_9897414_SNP [dm6]	A	C	1.892e^-4	0.903	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15768636	2R_15768636_SNP [dm3] 2R_19881131_SNP [dm6]	C	A	1.894e^-4	0.903	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	3776245	2R_3776245_SNP [dm3] 2R_7888740_SNP [dm6]	A	G	1.903e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12559137	2R_12559137_SNP [dm3] 2R_16671632_SNP [dm6]	A	G	1.907e^-4	0.903	UTR_3_PRIME CG34457 UPSTREAM CG34458
2L	7487551	2L_7487551_DEL [dm3] 2L_7487551_DEL [dm6]	GAGACC	G	1.908e^-4	0.903	INTRON Ziz
X	14788103	X_14788103_SNP [dm3] X_14894070_SNP [dm6]	G	T	1.935e^-4	0.903	INTRON Flo2 & 1 other
2R	17079115	2R_17079115_SNP [dm3] 2R_21191610_SNP [dm6]	C	T	1.943e^-4	0.903	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5510536	3L_5510536_SNP [dm3] 3L_5517436_SNP [dm6]	A	T	1.959e^-4	0.903	INTRON Lkr
3R	12458394	3R_12458394_SNP [dm3] 3R_16632672_SNP [dm6]	A	G	1.962e^-4	0.903	SYNONYMOUS_CODING Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8265299	3L_8265299_SNP [dm3] 3L_8272199_SNP [dm6]	G	T	1.967e^-4	0.903	INTRON Dscam4	TF binding site mE1_TFBS_cad
3L	14473126	3L_14473126_SNP [dm3] 3L_14480026_SNP [dm6]	T	C	1.970e^-4	0.903	INTRON bbg
3L	9161576	3L_9161576_DEL [dm3] 3L_9168476_DEL [dm6]	TT	T	1.986e^-4	0.903	INTRON Rdl
2L	7487549	2L_7487549_INS [dm3] 2L_7487549_INS [dm6]	T	TGGTCTCAACT...	1.989e^-4	0.903	INTRON Ziz
3L	14288209	3L_14288209_SNP [dm3] 3L_14295109_SNP [dm6]	A	G	1.991e^-4	0.903	INTRON fz
2L	18622620	2L_18622620_SNP [dm3] 2L_18622620_SNP [dm6]	C	T	1.992e^-4	0.903	INTRON MESR3
3L	11237884	3L_11237884_SNP [dm3] 3L_11244784_SNP [dm6]	T	C	2.011e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	5741733	2R_5741733_SNP [dm3] 2R_9854228_SNP [dm6]	A	G	2.011e^-4	0.903	INTRON CG1516	TF binding site mE1_TFBS_cad
2R	5733928	2R_5733928_SNP [dm3] 2R_9846423_SNP [dm6]	C	A	2.014e^-4	0.903	START_GAINED Orc6 UTR_5_PRIME Orc6 DOWNSTREAM CG1667 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
2L	13029792	2L_13029792_SNP [dm3] 2L_13029792_SNP [dm6]	T	G	2.014e^-4	0.903	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13920139	2R_13920139_SNP [dm3] 2R_18032634_SNP [dm6]	A	G	2.016e^-4	0.903	INTERGENIC
3R	20862102	3R_20862102_SNP [dm3] 3R_25036380_SNP [dm6]	G	T	2.018e^-4	0.903	UPSTREAM CG31115 INTRON CG6422
2L	13061266	2L_13061266_SNP [dm3] 2L_13061266_SNP [dm6]	C	A	2.019e^-4	0.903	INTERGENIC
3R	23344785	3R_23344785_SNP [dm3] 3R_27519063_SNP [dm6]	T	C	2.021e^-4	0.903	INTERGENIC
3R	25562603	3R_25562603_SNP [dm3] 3R_29736881_SNP [dm6]	C	T	2.024e^-4	0.903	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25562623	3R_25562623_SNP [dm3] 3R_29736901_SNP [dm6]	C	G	2.024e^-4	0.903	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25562636	3R_25562636_SNP [dm3] 3R_29736914_SNP [dm6]	C	G	2.024e^-4	0.903	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17820101	2R_17820101_SNP [dm3] 2R_21932596_SNP [dm6]	T	G	2.025e^-4	0.903	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3895037	2L_3895037_SNP [dm3] 2L_3895037_SNP [dm6]	T	C	2.026e^-4	0.903	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	17352064	2L_17352064_SNP [dm3] 2L_17352064_SNP [dm6]	A	C	2.045e^-4	0.903	INTERGENIC
3L	1604286	3L_1604286_SNP [dm3] 3L_1604286_SNP [dm6]	A	T	2.049e^-4	0.903	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3L	20360484	3L_20360484_SNP [dm3] 3L_20367384_SNP [dm6]	G	C	2.053e^-4	0.903	SYNONYMOUS_CODING in UPSTREAM Toll-9	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2R	8484913	2R_8484913_SNP [dm3] 2R_12597408_SNP [dm6]	C	A	2.054e^-4	0.903	INTRON Amph
2R	13183194	2R_13183194_SNP [dm3] 2R_17295689_SNP [dm6]	C	A	2.058e^-4	0.903	INTRON mbl
2R	16093582	2R_16093582_SNP [dm3] 2R_20206077_SNP [dm6]	G	A	2.063e^-4	0.903	INTERGENIC
3L	3767127	3L_3767127_SNP [dm3] 3L_3767127_SNP [dm6]	C	A	2.064e^-4	0.903	INTRON CG32264	TF binding site mE1_TFBS_bab1
2L	10289959	2L_10289959_SNP [dm3] 2L_10289959_SNP [dm6]	G	A	2.074e^-4	0.903	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6011803	X_6011803_SNP [dm3] X_6117770_SNP [dm6]	T	A	2.082e^-4	0.903	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl
3L	14863203	3L_14863203_DEL [dm3] 3L_14870103_DEL [dm6]	AACCATCAAGTGTTTTATGT...	T	2.086e^-4	0.903	INTRON CG17839	TF binding site mE1_TFBS_cad
3L	4438546	3L_4438546_SNP [dm3] 3L_4438546_SNP [dm6]	C	T	2.095e^-4	0.903	DOWNSTREAM CG15021 INTERGENIC
3L	2679592	3L_2679592_SNP [dm3] 3L_2679592_SNP [dm6]	A	T	2.100e^-4	0.903	INTRON Fife	TF binding site mE1_TFBS_chinmo
2L	21007009	2L_21007009_SNP [dm3] 2L_21007009_SNP [dm6]	T	C	2.100e^-4	0.903	INTRON CG42238
3R	25563014	3R_25563014_SNP [dm3] 3R_29737292_SNP [dm6]	C	T	2.103e^-4	0.903	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601 & 1 other	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
3R	25563253	3R_25563253_SNP [dm3] 3R_29737531_SNP [dm6]	T	G	2.103e^-4	0.903	UPSTREAM CG7601 & 1 other INTRON CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	12080323	3R_12080323_DEL [dm3] 3R_16254601_DEL [dm6]	TATT	T	2.103e^-4	0.903	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2268867	3L_2268867_SNP [dm3] 3L_2268867_SNP [dm6]	A	C	2.107e^-4	0.903	NON_SYNONYMOUS_CODING CG32302 DOWNSTREAM obst-I	TF binding site mE1_TFBS_cad
2L	17230328	2L_17230328_SNP [dm3] 2L_17230328_SNP [dm6]	A	G	2.107e^-4	0.903	INTRON beat-IIIc
3L	8874383	3L_8874383_SNP [dm3] 3L_8881283_SNP [dm6]	G	A	2.113e^-4	0.903	INTRON dally
2R	5733815	2R_5733815_SNP [dm3] 2R_9846310_SNP [dm6]	A	C	2.115e^-4	0.903	DOWNSTREAM CG1667 & 1 other INTRON Orc6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	20157145	X_20157145_SNP [dm3] X_20286118_SNP [dm6]	A	T	2.132e^-4	0.903	INTERGENIC
3L	8844674	3L_8844674_SNP [dm3] 3L_8851574_SNP [dm6]	A	G	2.150e^-4	0.903	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	1235884	2L_1235884_SNP [dm3] 2L_1235884_SNP [dm6]	A	T	2.155e^-4	0.903	INTERGENIC
3R	22574973	3R_22574973_SNP [dm3] 3R_26749251_SNP [dm6]	A	G	2.159e^-4	0.903	INTERGENIC
2L	8316129	2L_8316129_SNP [dm3] 2L_8316129_SNP [dm6]	G	C	2.174e^-4	0.903	SPLICE_SITE_REGION CG7806 DOWNSTREAM mtsh INTRON CG7806
2L	6244390	2L_6244390_SNP [dm3] 2L_6244390_SNP [dm6]	T	A	2.178e^-4	0.903	INTERGENIC
2L	16115680	2L_16115680_SNP [dm3] 2L_16115680_SNP [dm6]	G	A	2.179e^-4	0.903	INTERGENIC
3L	9303451	3L_9303451_SNP [dm3] 3L_9310351_SNP [dm6]	T	C	2.191e^-4	0.903	INTERGENIC
2R	5731932	2R_5731932_SNP [dm3] 2R_9844427_SNP [dm6]	T	C	2.197e^-4	0.903	INTRON CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	11063463	3L_11063463_SNP [dm3] 3L_11070363_SNP [dm6]	C	T	2.197e^-4	0.903	UPSTREAM Mocs1 & 1 other INTERGENIC
3L	5877833	3L_5877833_SNP [dm3] 3L_5884733_SNP [dm6]	G	A	2.198e^-4	0.903	DOWNSTREAM CG13287 INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	12204990	3R_12204990_SNP [dm3] 3R_16379268_SNP [dm6]	C	T	2.208e^-4	0.903	INTRON ss
X	13998931	X_13998931_SNP [dm3] X_14104898_SNP [dm6]	A	G	2.208e^-4	0.903	DOWNSTREAM tRNA:S774:12Ef INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	5784679	2R_5784679_SNP [dm3] 2R_9897174_SNP [dm6]	A	G	2.215e^-4	0.903	SYNONYMOUS_CODING CG30007
2L	1219417	2L_1219417_SNP [dm3] 2L_1219417_SNP [dm6]	A	G	2.218e^-4	0.903	NON_SYNONYMOUS_CODING CG42329	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4758835	2R_4758835_SNP [dm3] 2R_8871330_SNP [dm6]	G	T	2.222e^-4	0.903	INTRON RyR
3L	12856180	3L_12856180_DEL [dm3] 3L_12863080_DEL [dm6]	TT	T	2.233e^-4	0.903	UPSTREAM CG10943 INTERGENIC
X	13998951	X_13998951_SNP [dm3] X_14104918_SNP [dm6]	A	T	2.236e^-4	0.903	DOWNSTREAM tRNA:S774:12Ef INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3R	5554007	3R_5554007_SNP [dm3] 3R_9728285_SNP [dm6]	A	T	2.242e^-4	0.903	INTRON FoxP
2L	14905769	2L_14905769_SNP [dm3] 2L_14905769_SNP [dm6]	G	A	2.242e^-4	0.903	INTERGENIC
3L	16576012	3L_16576012_SNP [dm3] 3L_16582912_SNP [dm6]	G	C	2.248e^-4	0.903	UPSTREAM Rpn12 DOWNSTREAM CR43727 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	2145954	2L_2145954_SNP [dm3] 2L_2145954_SNP [dm6]	G	C	2.256e^-4	0.903	SYNONYMOUS_CODING CG11723 UPSTREAM tho2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3553491	3R_3553491_SNP [dm3] 3R_7727769_SNP [dm6]	C	G	2.256e^-4	0.903	INTERGENIC
2L	4351335	2L_4351335_SNP [dm3] 2L_4351335_SNP [dm6]	G	T	2.260e^-4	0.903	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8688036	2R_8688036_SNP [dm3] 2R_12800531_SNP [dm6]	G	A	2.263e^-4	0.903	SYNONYMOUS_CODING sca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10858220	X_10858220_SNP [dm3] X_10964187_SNP [dm6]	G	T	2.272e^-4	0.903	UTR_3_PRIME C901 DOWNSTREAM Myo10A
3R	13129916	3R_13129916_INS [dm3] 3R_17304194_INS [dm6]	A	AA	2.273e^-4	0.903	INTERGENIC
2R	13184610	2R_13184610_SNP [dm3] 2R_17297105_SNP [dm6]	A	C	2.273e^-4	0.903	INTRON mbl
3L	18521083	3L_18521083_SNP [dm3] 3L_18527983_SNP [dm6]	C	T	2.279e^-4	0.903	DOWNSTREAM CG32198 INTERGENIC
2R	11786854	2R_11786854_DEL [dm3] 2R_15899349_DEL [dm6]	GTCCA	G	2.282e^-4	0.903	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16298184	3L_16298184_SNP [dm3] 3L_16305084_SNP [dm6]	T	C	2.283e^-4	0.903	DOWNSTREAM CG13043 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	6915014	2R_6915014_SNP [dm3] 2R_11027509_SNP [dm6]	C	A	2.288e^-4	0.903	INTRON luna
2L	17501727	2L_17501727_SNP [dm3] 2L_17501727_SNP [dm6]	G	A	2.294e^-4	0.903	SYNONYMOUS_CODING Dhc36C UPSTREAM CG6412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo
3L	4438545	3L_4438545_SNP [dm3] 3L_4438545_SNP [dm6]	A	T	2.294e^-4	0.903	DOWNSTREAM CG15021 INTERGENIC
3R	13854148	3R_13854148_SNP [dm3] 3R_18028426_SNP [dm6]	A	G	2.300e^-4	0.903	INTERGENIC
3L	12195855	3L_12195855_SNP [dm3] 3L_12202755_SNP [dm6]	C	T	2.307e^-4	0.903	INTRON Adk1
2L	11571561	2L_11571561_SNP [dm3] 2L_11571561_SNP [dm6]	A	T	2.308e^-4	0.903	INTERGENIC
2L	17352057	2L_17352057_SNP [dm3] 2L_17352057_SNP [dm6]	A	G	2.312e^-4	0.903	INTERGENIC
3R	837142	3R_837142_SNP [dm3] 3R_5011420_SNP [dm6]	T	A	2.313e^-4	0.903	UPSTREAM CG2022 INTERGENIC
3L	14886079	3L_14886079_SNP [dm3] 3L_14892979_SNP [dm6]	A	G	2.314e^-4	0.903	DOWNSTREAM CG34245 INTERGENIC
2L	12385903	2L_12385903_SNP [dm3] 2L_12385903_SNP [dm6]	G	A	2.319e^-4	0.903	INTRON bru-2
2L	17169914	2L_17169914_SNP [dm3] 2L_17169914_SNP [dm6]	C	G	2.327e^-4	0.903	SYNONYMOUS_CODING beat-IIIa UTR_5_PRIME CG34106
2R	13411193	2R_13411193_SNP [dm3] 2R_17523688_SNP [dm6]	A	C	2.329e^-4	0.903	INTRON Patronin
2R	5742476	2R_5742476_SNP [dm3] 2R_9854971_SNP [dm6]	T	C	2.339e^-4	0.903	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16331071	3L_16331071_SNP [dm3] 3L_16337971_SNP [dm6]	C	A	2.340e^-4	0.903	INTERGENIC
2R	5732318	2R_5732318_SNP [dm3] 2R_9844813_SNP [dm6]	A	G	2.340e^-4	0.903	SYNONYMOUS_CODING CG1667 DOWNSTREAM Orc6
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	2.343e^-4	0.903	INTRON RhoGEF64C
X	20396997	X_20396997_DEL [dm3] X_20525970_DEL [dm6]	TA	T	2.344e^-4	0.903	INTERGENIC	transposable element FlyBase
2R	15273307	2R_15273307_SNP [dm3] 2R_19385802_SNP [dm6]	A	G	2.348e^-4	0.903	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2R	16000760	2R_16000760_SNP [dm3] 2R_20113255_SNP [dm6]	C	G	2.365e^-4	0.903	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14528183	3R_14528183_SNP [dm3] 3R_18702461_SNP [dm6]	A	G	2.369e^-4	0.903	INTERGENIC
2R	13378219	2R_13378219_SNP [dm3] 2R_17490714_SNP [dm6]	T	C	2.386e^-4	0.903	INTRON NT5E-2
3R	15997851	3R_15997851_SNP [dm3] 3R_20172129_SNP [dm6]	T	C	2.391e^-4	0.903	INTRON CG5023
2R	18261053	2R_18261053_SNP [dm3] 2R_22373548_SNP [dm6]	C	A	2.398e^-4	0.903	UPSTREAM Liprin-gamma DOWNSTREAM CR44759 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25818009	3R_25818009_SNP [dm3] 3R_29992287_SNP [dm6]	G	T	2.399e^-4	0.903	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12385855	2L_12385855_SNP [dm3] 2L_12385855_SNP [dm6]	A	G	2.400e^-4	0.903	INTRON bru-2
X	18540327	X_18540327_SNP [dm3] X_18646294_SNP [dm6]	G	A	2.404e^-4	0.903	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3920699	3L_3920699_SNP [dm3] 3L_3920699_SNP [dm6]	G	A	2.406e^-4	0.903	INTRON Eip63F-1
2R	9734774	2R_9734774_SNP [dm3] 2R_13847269_SNP [dm6]	G	A	2.412e^-4	0.903	SYNONYMOUS_CODING CG30484
2R	18940258	2R_18940258_SNP [dm3] 2R_23052735_SNP [dm6]	C	A	2.416e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12566599	2R_12566599_SNP [dm3] 2R_16679094_SNP [dm6]	A	G	2.418e^-4	0.903	INTRON CG30463
3L	14885806	3L_14885806_SNP [dm3] 3L_14892706_SNP [dm6]	A	C	2.422e^-4	0.903	INTERGENIC
3R	22758009	3R_22758009_SNP [dm3] 3R_26932287_SNP [dm6]	C	T	2.424e^-4	0.903	INTRON sda
2L	12385825	2L_12385825_SNP [dm3] 2L_12385825_SNP [dm6]	T	G	2.427e^-4	0.903	INTRON bru-2
3L	10976529	3L_10976529_SNP [dm3] 3L_10983429_SNP [dm6]	G	A	2.431e^-4	0.903	SYNONYMOUS_CODING klu	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3265453	X_3265453_SNP [dm3] X_3371420_SNP [dm6]	G	T	2.438e^-4	0.903	INTERGENIC
2R	5884921	2R_5884921_SNP [dm3] 2R_9997416_SNP [dm6]	C	T	2.444e^-4	0.903	UTR_3_PRIME Pka-R2 INTRON Pka-R2
3L	16298023	3L_16298023_SNP [dm3] 3L_16304923_SNP [dm6]	C	T	2.444e^-4	0.903	DOWNSTREAM CG13043 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5161079	3L_5161079_SNP [dm3] 3L_5167979_SNP [dm6]	C	T	2.449e^-4	0.903	INTRON shep
2R	13966540	2R_13966540_SNP [dm3] 2R_18079035_SNP [dm6]	T	A	2.460e^-4	0.903	INTRON CG34386
3R	2788954	3R_2788954_DEL [dm3] 3R_6963232_DEL [dm6]	GG	G	2.461e^-4	0.903	INTRON Antp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3178649	2L_3178649_INS [dm3] 2L_3178649_INS [dm6]	C	CA	2.462e^-4	0.903	INTRON CG34393
2L	7442983	2L_7442983_SNP [dm3] 2L_7442983_SNP [dm6]	C	G	2.464e^-4	0.903	UPSTREAM CG5973 INTRON CG5973
3L	16573109	3L_16573109_SNP [dm3] 3L_16580009_SNP [dm6]	G	T	2.469e^-4	0.903	UPSTREAM nxf2 DOWNSTREAM Smn INTRON nxf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	466135	3R_466135_SNP [dm3] 3R_4640413_SNP [dm6]	C	A	2.471e^-4	0.903	INTRON CG9775	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5516710	2L_5516710_SNP [dm3] 2L_5516710_SNP [dm6]	T	G	2.472e^-4	0.903	INTERGENIC
2L	3990701	2L_3990701_SNP [dm3] 2L_3990701_SNP [dm6]	T	G	2.475e^-4	0.903	INTRON fred
2R	14698626	2R_14698626_SNP [dm3] 2R_18811121_SNP [dm6]	A	G	2.478e^-4	0.903	INTRON CG15096
2R	14871562	2R_14871562_SNP [dm3] 2R_18984057_SNP [dm6]	T	C	2.480e^-4	0.903	INTERGENIC
3L	1198495	3L_1198495_DEL [dm3] 3L_1198495_DEL [dm6]	TC	T	2.482e^-4	0.903	INTRON Aplip1
3L	6795081	3L_6795081_SNP [dm3] 3L_6801981_SNP [dm6]	T	G	2.485e^-4	0.903	INTERGENIC
3L	14320302	3L_14320302_SNP [dm3] 3L_14327202_SNP [dm6]	C	A	2.487e^-4	0.903	UPSTREAM CR45025 INTRON fz
2L	15458068	2L_15458068_SNP [dm3] 2L_15458068_SNP [dm6]	T	G	2.491e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	13365660	2R_13365660_SNP [dm3] 2R_17478155_SNP [dm6]	A	T	2.493e^-4	0.903	UTR_3_PRIME CG43110 UPSTREAM veil	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16544073	2L_16544073_DEL [dm3] 2L_16544073_DEL [dm6]	ATCTGG	A	2.494e^-4	0.903	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12052640	2R_12052640_SNP [dm3] 2R_16165135_SNP [dm6]	G	A	2.494e^-4	0.903	INTRON lbk	TF binding site mE1_TFBS_HSA
2R	12052644	2R_12052644_SNP [dm3] 2R_16165139_SNP [dm6]	A	G	2.494e^-4	0.903	INTRON lbk	TF binding site mE1_TFBS_HSA
2R	12102254	2R_12102254_SNP [dm3] 2R_16214749_SNP [dm6]	C	G	2.504e^-4	0.903	INTRON mrj
2R	12102256	2R_12102256_SNP [dm3] 2R_16214751_SNP [dm6]	G	T	2.504e^-4	0.903	INTRON mrj
3L	14189540	3L_14189540_SNP [dm3] 3L_14196440_SNP [dm6]	T	C	2.504e^-4	0.903	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	20335370	X_20335370_SNP [dm3] X_20464343_SNP [dm6]	A	G	2.507e^-4	0.903	INTRON CG32506
3L	20357197	3L_20357197_SNP [dm3] 3L_20364097_SNP [dm6]	T	G	2.507e^-4	0.903	SYNONYMOUS_CODING Toll-9	TF binding site mE1_TFBS_HSA
2R	5785120	2R_5785120_SNP [dm3] 2R_9897615_SNP [dm6]	C	T	2.508e^-4	0.903	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14905746	2L_14905746_SNP [dm3] 2L_14905746_SNP [dm6]	T	A	2.516e^-4	0.903	INTERGENIC
3R	23544142	3R_23544142_SNP [dm3] 3R_27718420_SNP [dm6]	G	C	2.519e^-4	0.903	INTERGENIC
3L	8874372	3L_8874372_SNP [dm3] 3L_8881272_SNP [dm6]	G	A	2.527e^-4	0.903	INTRON dally
3L	18073712	3L_18073712_SNP [dm3] 3L_18080612_SNP [dm6]	T	C	2.532e^-4	0.903	DOWNSTREAM CR43253 INTERGENIC
3R	20489173	3R_20489173_DEL [dm3] 3R_24663451_DEL [dm6]	TT	T	2.533e^-4	0.903	INTRON slo	regulatory region REDfly_CRMs
2L	12385853	2L_12385853_SNP [dm3] 2L_12385853_SNP [dm6]	T	A	2.536e^-4	0.903	INTRON bru-2
2L	3588034	2L_3588034_SNP [dm3] 2L_3588034_SNP [dm6]	G	A	2.542e^-4	0.903	DOWNSTREAM CR43823 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	1487346	3L_1487346_SNP [dm3] 3L_1487346_SNP [dm6]	G	A	2.550e^-4	0.903	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	15458494	2L_15458494_SNP [dm3] 2L_15458494_SNP [dm6]	G	T	2.554e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3895053	2L_3895053_SNP [dm3] 2L_3895053_SNP [dm6]	C	T	2.562e^-4	0.903	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	17322290	2L_17322290_SNP [dm3] 2L_17322290_SNP [dm6]	A	T	2.564e^-4	0.903	INTERGENIC
2L	3210293	2L_3210293_SNP [dm3] 2L_3210293_SNP [dm6]	C	T	2.568e^-4	0.903	UPSTREAM CR45336 INTERGENIC
2R	11136069	2R_11136069_DEL [dm3] 2R_15248564_DEL [dm6]	TA	T	2.574e^-4	0.903	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	8844673	3L_8844673_SNP [dm3] 3L_8851573_SNP [dm6]	G	C	2.575e^-4	0.903	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	21304739	2L_21304739_SNP [dm3] 2L_21304739_SNP [dm6]	A	C	2.576e^-4	0.903	UPSTREAM Mio INTRON Mio
3R	23344781	3R_23344781_SNP [dm3] 3R_27519059_SNP [dm6]	A	T	2.584e^-4	0.903	INTERGENIC
X	20613141	X_20613141_INS [dm3] X_20742114_INS [dm6]	C	CGCTTTTCC	2.589e^-4	0.903	INTERGENIC
3R	15303500	3R_15303500_SNP [dm3] 3R_19477778_SNP [dm6]	C	T	2.602e^-4	0.903	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13920115	2R_13920115_SNP [dm3] 2R_18032610_SNP [dm6]	T	A	2.611e^-4	0.903	INTERGENIC
2R	13860446	2R_13860446_SNP [dm3] 2R_17972941_SNP [dm6]	T	C	2.624e^-4	0.903	INTERGENIC
2R	15383378	2R_15383378_SNP [dm3] 2R_19495873_SNP [dm6]	G	A	2.625e^-4	0.903	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14146663	3L_14146663_SNP [dm3] 3L_14153563_SNP [dm6]	A	G	2.632e^-4	0.903	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	26090914	3R_26090914_SNP [dm3] 3R_30265192_SNP [dm6]	T	C	2.640e^-4	0.903	INTERGENIC	silencer mE1_HDAC_PRE
3L	8867031	3L_8867031_SNP [dm3] 3L_8873931_SNP [dm6]	T	G	2.642e^-4	0.903	INTRON dally
X	15026959	X_15026959_SNP [dm3] X_15132926_SNP [dm6]	T	A	2.644e^-4	0.903	INTRON drd
3R	6671035	3R_6671035_SNP [dm3] 3R_10845313_SNP [dm6]	T	G	2.647e^-4	0.903	INTRON Cad86C
2L	17322284	2L_17322284_SNP [dm3] 2L_17322284_SNP [dm6]	G	A	2.650e^-4	0.903	INTERGENIC
2L	3901786	2L_3901786_SNP [dm3] 2L_3901786_SNP [dm6]	G	A	2.654e^-4	0.903	INTRON capu
3L	21253931	3L_21253931_SNP [dm3] 3L_21260831_SNP [dm6]	T	A	2.654e^-4	0.903	INTRON Eip78C
2L	15458161	2L_15458161_SNP [dm3] 2L_15458161_SNP [dm6]	A	T	2.663e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	9356198	3R_9356198_SNP [dm3] 3R_13530476_SNP [dm6]	T	G	2.664e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17958601	2R_17958601_SNP [dm3] 2R_22071096_SNP [dm6]	T	C	2.664e^-4	0.903	SYNONYMOUS_CODING CG11475 DOWNSTREAM CG11474
2R	8790543	2R_8790543_SNP [dm3] 2R_12903038_SNP [dm6]	C	A	2.671e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16757525	3R_16757525_SNP [dm3] 3R_20931803_SNP [dm6]	C	T	2.672e^-4	0.903	INTRON CG31191
2R	13850050	2R_13850050_SNP [dm3] 2R_17962545_SNP [dm6]	A	T	2.672e^-4	0.903	INTERGENIC
2R	12558843	2R_12558843_SNP [dm3] 2R_16671338_SNP [dm6]	T	G	2.678e^-4	0.903	UPSTREAM CG34458 INTRON CG34457	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13466648	3R_13466648_SNP [dm3] 3R_17640926_SNP [dm6]	A	T	2.685e^-4	0.903	INTRON CG43175
2R	12144909	2R_12144909_SNP [dm3] 2R_16257404_SNP [dm6]	A	C	2.687e^-4	0.903	INTRON CngA
3L	8874377	3L_8874377_SNP [dm3] 3L_8881277_SNP [dm6]	C	T	2.694e^-4	0.903	INTRON dally
2R	6085847	2R_6085847_SNP [dm3] 2R_10198342_SNP [dm6]	G	T	2.696e^-4	0.903	INTRON CG34221
2L	17230310	2L_17230310_SNP [dm3] 2L_17230310_SNP [dm6]	A	G	2.698e^-4	0.903	INTRON beat-IIIc
2R	5732852	2R_5732852_SNP [dm3] 2R_9845347_SNP [dm6]	A	G	2.704e^-4	0.903	UTR_3_PRIME CG1667 DOWNSTREAM Orc6
2L	12528900	2L_12528900_INS [dm3] 2L_12528900_INS [dm6]	G	GCTAT	2.719e^-4	0.903	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	21383927	2L_21383927_SNP [dm3] 2L_21383927_SNP [dm6]	A	C	2.735e^-4	0.903	INTRON nrv3	transposable element FlyBase
2R	5731332	2R_5731332_SNP [dm3] 2R_9843827_SNP [dm6]	C	T	2.736e^-4	0.903	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	13870327	2R_13870327_SNP [dm3] 2R_17982822_SNP [dm6]	A	G	2.742e^-4	0.903	INTRON dpr13
3R	17399650	3R_17399650_SNP [dm3] 3R_21573928_SNP [dm6]	T	C	2.759e^-4	0.903	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12102258	2R_12102258_SNP [dm3] 2R_16214753_SNP [dm6]	T	G	2.765e^-4	0.903	INTRON mrj
2L	3549708	2L_3549708_SNP [dm3] 2L_3549708_SNP [dm6]	A	C	2.766e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	24926626	3R_24926626_SNP [dm3] 3R_29100904_SNP [dm6]	A	T	2.767e^-4	0.903	NON_SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15569447	2L_15569447_SNP [dm3] 2L_15569447_SNP [dm6]	A	T	2.774e^-4	0.903	INTRON kek3
3L	3922633	3L_3922633_SNP [dm3] 3L_3922633_SNP [dm6]	C	T	2.782e^-4	0.903	INTRON Eip63F-1
3L	13107418	3L_13107418_SNP [dm3] 3L_13114318_SNP [dm6]	G	T	2.799e^-4	0.903	UTR_5_PRIME trn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	18622581	2L_18622581_SNP [dm3] 2L_18622581_SNP [dm6]	G	T	2.802e^-4	0.903	INTRON MESR3
2R	14993373	2R_14993373_SNP [dm3] 2R_19105868_SNP [dm6]	A	T	2.804e^-4	0.903	INTRON 5-HT1A
X	11218527	X_11218527_SNP [dm3] X_11324494_SNP [dm6]	A	G	2.808e^-4	0.903	UTR_3_PRIME l_1_10Bb UPSTREAM CG1657	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	6234590	2L_6234590_SNP [dm3] 2L_6234590_SNP [dm6]	A	G	2.813e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	19873566	X_19873566_SNP [dm3] X_19979533_SNP [dm6]	T	A	2.820e^-4	0.903	INTERGENIC
3L	12080574	3L_12080574_SNP [dm3] 3L_12087474_SNP [dm6]	T	G	2.823e^-4	0.903	INTERGENIC
3R	2067625	3R_2067625_SNP [dm3] 3R_6241903_SNP [dm6]	A	G	2.829e^-4	0.903	INTERGENIC
X	20157116	X_20157116_SNP [dm3] X_20286089_SNP [dm6]	G	T	2.830e^-4	0.903	INTERGENIC
3R	24277194	3R_24277194_DEL [dm3] 3R_28451472_DEL [dm6]	AA	A	2.835e^-4	0.903	INTRON beat-VI
2R	5771199	2R_5771199_SNP [dm3] 2R_9883694_SNP [dm6]	C	T	2.835e^-4	0.903	UTR_3_PRIME CG1513
2R	5783795	2R_5783795_SNP [dm3] 2R_9896290_SNP [dm6]	C	A	2.837e^-4	0.903	NON_SYNONYMOUS_CODING CG30007
3L	5065323	3L_5065323_SNP [dm3] 3L_5065323_SNP [dm6]	C	T	2.840e^-4	0.903	INTRON Con
2L	7684231	2L_7684231_SNP [dm3] 2L_7684231_SNP [dm6]	G	T	2.843e^-4	0.903	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
3L	18304732	3L_18304732_SNP [dm3] 3L_18311632_SNP [dm6]	A	G	2.847e^-4	0.903	INTERGENIC
3R	15907927	3R_15907927_SNP [dm3] 3R_20082205_SNP [dm6]	C	A	2.849e^-4	0.903	SYNONYMOUS_CODING Rh3	TF binding site mE1_TFBS_cad
2L	14401756	2L_14401756_SNP [dm3] 2L_14401756_SNP [dm6]	A	G	2.859e^-4	0.903	INTRON elB
X	13999007	X_13999007_INS [dm3] X_14104974_INS [dm6]	A	AA	2.860e^-4	0.903	DOWNSTREAM tRNA:S774:12Ef INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	18304718	3L_18304718_SNP [dm3] 3L_18311618_SNP [dm6]	A	T	2.863e^-4	0.903	INTERGENIC
3R	22864245	3R_22864245_SNP [dm3] 3R_27038523_SNP [dm6]	G	T	2.868e^-4	0.903	INTRON RYa-R
2R	13042890	2R_13042890_SNP [dm3] 2R_17155385_SNP [dm6]	C	T	2.873e^-4	0.903	UTR_3_PRIME CG17290 DOWNSTREAM CG17290
2L	16714969	2L_16714969_SNP [dm3] 2L_16714969_SNP [dm6]	C	A	2.876e^-4	0.903	UPSTREAM Cyt-c-d INTRON CG31808
3R	15473973	3R_15473973_SNP [dm3] 3R_19648251_SNP [dm6]	G	A	2.885e^-4	0.903	SYNONYMOUS_CODING CG6195 UPSTREAM CG31220	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12052685	2R_12052685_DEL [dm3] 2R_16165180_DEL [dm6]	AAAACTATTTAATCAGC...	A	2.885e^-4	0.903	INTRON lbk	TF binding site mE1_TFBS_HSA
3L	15987776	3L_15987776_SNP [dm3] 3L_15994676_SNP [dm6]	C	G	2.887e^-4	0.903	UTR_3_PRIME CG5830
2L	4625319	2L_4625319_SNP [dm3] 2L_4625319_SNP [dm6]	C	G	2.888e^-4	0.903	INTERGENIC
3L	8874218	3L_8874218_SNP [dm3] 3L_8881118_SNP [dm6]	G	A	2.897e^-4	0.903	INTRON dally
X	12261543	X_12261543_SNP [dm3] X_12367510_SNP [dm6]	G	A	2.898e^-4	0.903	INTERGENIC
2R	5732693	2R_5732693_SNP [dm3] 2R_9845188_SNP [dm6]	G	A	2.899e^-4	0.903	UTR_3_PRIME CG1667 DOWNSTREAM Orc6
2R	3749203	2R_3749203_SNP [dm3] 2R_7861698_SNP [dm6]	G	A	2.900e^-4	0.903	INTRON Dgk
X	18520281	X_18520281_DEL [dm3] X_18626248_DEL [dm6]	GG	G	2.900e^-4	0.903	INTRON wgn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14156655	2R_14156655_SNP [dm3] 2R_18269150_SNP [dm6]	G	T	2.906e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11980368	3R_11980368_SNP [dm3] 3R_16154646_SNP [dm6]	C	G	2.910e^-4	0.903	UPSTREAM CG6006 INTERGENIC
2L	5496814	2L_5496814_SNP [dm3] 2L_5496814_SNP [dm6]	G	A	2.911e^-4	0.903	INTERGENIC
3R	20842508	3R_20842508_SNP [dm3] 3R_25016786_SNP [dm6]	C	T	2.917e^-4	0.903	SYNONYMOUS_CODING tnc
3R	22575128	3R_22575128_SNP [dm3] 3R_26749406_SNP [dm6]	A	G	2.933e^-4	0.903	INTERGENIC
2L	18551182	2L_18551182_SNP [dm3] 2L_18551182_SNP [dm6]	A	T	2.935e^-4	0.903	INTRON Pde11
X	11566228	X_11566228_INS [dm3] X_11672195_INS [dm6]	AC	CTT	2.937e^-4	0.903	INTRON Ptp10D	TF binding site mE1_TFBS_cad
2L	2892836	2L_2892836_SNP [dm3] 2L_2892836_SNP [dm6]	G	A	2.940e^-4	0.903	INTRON lilli	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15622957	3L_15622957_SNP [dm3] 3L_15629857_SNP [dm6]	G	A	2.940e^-4	0.903	INTRON comm3
2L	14004458	2L_14004458_SNP [dm3] 2L_14004458_SNP [dm6]	T	A	2.945e^-4	0.903	INTERGENIC
X	3180301	X_3180301_SNP [dm3] X_3286268_SNP [dm6]	C	T	2.947e^-4	0.903	INTRON dnc
3L	16618838	3L_16618838_SNP [dm3] 3L_16625738_SNP [dm6]	C	A	2.952e^-4	0.903	INTRON Abl	TF binding site BDTNP1_TFBS_dl
X	13998827	X_13998827_SNP [dm3] X_14104794_SNP [dm6]	G	C	2.962e^-4	0.903	DOWNSTREAM tRNA:S774:12Ef INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	6801518	3L_6801518_SNP [dm3] 3L_6808418_SNP [dm6]	G	A	2.963e^-4	0.903	INTERGENIC
2R	19489485	2R_19489485_SNP [dm3] 2R_23601962_SNP [dm6]	C	T	2.975e^-4	0.903	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	19489489	2R_19489489_SNP [dm3] 2R_23601966_SNP [dm6]	C	T	2.975e^-4	0.903	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	16114886	2R_16114886_SNP [dm3] 2R_20227381_SNP [dm6]	G	T	2.981e^-4	0.903	INTERGENIC
2L	15458124	2L_15458124_SNP [dm3] 2L_15458124_SNP [dm6]	T	A	2.992e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	20249905	3R_20249905_SNP [dm3] 3R_24424183_SNP [dm6]	G	A	2.995e^-4	0.903	INTRON nAChRalpha1
3L	6488482	3L_6488482_SNP [dm3] 3L_6495382_SNP [dm6]	A	C	3.007e^-4	0.903	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
X	13306393	X_13306393_SNP [dm3] X_13412360_SNP [dm6]	G	A	3.009e^-4	0.903	SYNONYMOUS_CODING CG1998 UPSTREAM CG1998 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19234338	2L_19234338_DEL [dm3] 2L_19234338_DEL [dm6]	TAGCCAGCTACT...	T	3.009e^-4	0.903	INTERGENIC
2R	18261781	2R_18261781_SNP [dm3] 2R_22374276_SNP [dm6]	A	G	3.010e^-4	0.903	UPSTREAM Rtf1 INTRON CR44759	TF binding site BDTNP1_TFBS_dl
3L	20309167	3L_20309167_INS [dm3] 3L_20316067_INS [dm6]	C	CC	3.011e^-4	0.903	UTR_3_PRIME alphaSnap INTRON CR43875
3L	10895641	3L_10895641_SNP [dm3] 3L_10902541_SNP [dm6]	T	A	3.014e^-4	0.903	INTERGENIC
3L	4144287	3L_4144287_SNP [dm3] 3L_4144287_SNP [dm6]	C	T	3.016e^-4	0.903	INTRON CG32260
2R	9394674	2R_9394674_SNP [dm3] 2R_13507169_SNP [dm6]	G	A	3.019e^-4	0.903	UPSTREAM EfTuM INTRON mip120	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9179925	X_9179925_SNP [dm3] X_9285892_SNP [dm6]	A	C	3.019e^-4	0.903	UTR_5_PRIME lz
2L	13673166	2L_13673166_SNP [dm3] 2L_13673166_SNP [dm6]	A	T	3.021e^-4	0.903	DOWNSTREAM CG18507 INTERGENIC
X	1319456	X_1319456_DEL [dm3] X_1425423_DEL [dm6]	CACCGAGGCGAGGCGAGGAG...	C	3.022e^-4	0.903	INTRON futsch	TF binding site mE1_TFBS_chinmo
2L	17619958	2L_17619958_SNP [dm3] 2L_17619958_SNP [dm6]	A	G	3.030e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5423850	3L_5423850_SNP [dm3] 3L_5430750_SNP [dm6]	G	A	3.031e^-4	0.903	INTRON CG34391
3R	15485053	3R_15485053_SNP [dm3] 3R_19659331_SNP [dm6]	A	G	3.032e^-4	0.903	UPSTREAM ort INTERGENIC
2L	10044268	2L_10044268_SNP [dm3] 2L_10044268_SNP [dm6]	G	T	3.035e^-4	0.903	INTERGENIC
3R	19066076	3R_19066076_SNP [dm3] 3R_23240354_SNP [dm6]	G	A	3.042e^-4	0.903	UPSTREAM CG4467 INTRON CG4467
2R	15947474	2R_15947474_SNP [dm3] 2R_20059969_SNP [dm6]	T	C	3.047e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	3.054e^-4	0.903	INTRON RhoGEF64C
2R	13150907	2R_13150907_SNP [dm3] 2R_17263402_SNP [dm6]	T	A	3.055e^-4	0.903	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9579351	2R_9579351_SNP [dm3] 2R_13691846_SNP [dm6]	C	G	3.059e^-4	0.903	UTR_3_PRIME CG6220 INTRON fas
2R	16363317	2R_16363317_SNP [dm3] 2R_20475812_SNP [dm6]	C	T	3.059e^-4	0.903	INTRON CG12484
2L	5393573	2L_5393573_SNP [dm3] 2L_5393573_SNP [dm6]	A	T	3.066e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14004466	2L_14004466_SNP [dm3] 2L_14004466_SNP [dm6]	G	T	3.069e^-4	0.903	INTERGENIC
X	13998842	X_13998842_SNP [dm3] X_14104809_SNP [dm6]	G	A	3.069e^-4	0.903	DOWNSTREAM tRNA:S774:12Ef INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	15671444	2R_15671444_SNP [dm3] 2R_19783939_SNP [dm6]	T	A	3.080e^-4	0.903	UPSTREAM CR45231 INTRON Obp56g
2R	12144943	2R_12144943_SNP [dm3] 2R_16257438_SNP [dm6]	A	G	3.080e^-4	0.903	INTRON CngA
3R	19066119	3R_19066119_SNP [dm3] 3R_23240397_SNP [dm6]	T	C	3.085e^-4	0.903	UPSTREAM CG4467 INTRON CG4467
X	12941357	X_12941357_SNP [dm3] X_13047324_SNP [dm6]	C	A	3.087e^-4	0.903	INTRON rad
2L	14005066	2L_14005066_SNP [dm3] 2L_14005066_SNP [dm6]	C	T	3.096e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21355372	2L_21355372_SNP [dm3] 2L_21355372_SNP [dm6]	T	A	3.100e^-4	0.903	INTRON Tsp39D
2L	3508820	2L_3508820_SNP [dm3] 2L_3508820_SNP [dm6]	C	G	3.108e^-4	0.903	UPSTREAM CR45300 & 1 other DOWNSTREAM CG31954 EXON CR45299
2L	15808281	2L_15808281_SNP [dm3] 2L_15808281_SNP [dm6]	T	G	3.109e^-4	0.903	EXON CR44602
3L	8811821	3L_8811821_SNP [dm3] 3L_8818721_SNP [dm6]	G	T	3.109e^-4	0.903	INTERGENIC
2R	15065912	2R_15065912_SNP [dm3] 2R_19178407_SNP [dm6]	C	T	3.110e^-4	0.903	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9165065	2R_9165065_SNP [dm3] 2R_13277560_SNP [dm6]	T	C	3.117e^-4	0.903	NON_SYNONYMOUS_CODING Dh31-R
3R	15584237	3R_15584237_DEL [dm3] 3R_19758515_DEL [dm6]	CCACCACACC	C	3.118e^-4	0.903	INTRON GluClalpha
3R	18690241	3R_18690241_SNP [dm3] 3R_22864519_SNP [dm6]	G	T	3.123e^-4	0.903	INTERGENIC
3R	11223629	3R_11223629_SNP [dm3] 3R_15397907_SNP [dm6]	A	T	3.130e^-4	0.903	INTRON Rbp
3L	10355750	3L_10355750_SNP [dm3] 3L_10362650_SNP [dm6]	T	C	3.133e^-4	0.903	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10377711	3L_10377711_SNP [dm3] 3L_10384611_SNP [dm6]	T	C	3.134e^-4	0.903	INTERGENIC
2L	17088169	2L_17088169_SNP [dm3] 2L_17088169_SNP [dm6]	T	C	3.135e^-4	0.903	SYNONYMOUS_CODING CG12620
2R	12565484	2R_12565484_SNP [dm3] 2R_16677979_SNP [dm6]	T	C	3.144e^-4	0.903	INTRON CG30463
3L	12366910	3L_12366910_SNP [dm3] 3L_12373810_SNP [dm6]	C	G	3.149e^-4	0.903	NON_SYNONYMOUS_CODING Ncc69	TF binding site mE1_TFBS_cad
3R	23266448	3R_23266448_SNP [dm3] 3R_27440726_SNP [dm6]	A	C	3.153e^-4	0.903	UTR_3_PRIME CG43447 INTRON CG44290	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	18304772	3L_18304772_SNP [dm3] 3L_18311672_SNP [dm6]	T	A	3.156e^-4	0.903	INTERGENIC
3L	9566698	3L_9566698_SNP [dm3] 3L_9573598_SNP [dm6]	T	C	3.163e^-4	0.903	INTRON CG42673
3L	10378453	3L_10378453_SNP [dm3] 3L_10385353_SNP [dm6]	T	A	3.164e^-4	0.903	INTERGENIC
2R	17476519	2R_17476519_SNP [dm3] 2R_21589014_SNP [dm6]	A	T	3.165e^-4	0.903	INTERGENIC
2L	13665220	2L_13665220_SNP [dm3] 2L_13665220_SNP [dm6]	G	A	3.165e^-4	0.903	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5734134	2R_5734134_SNP [dm3] 2R_9846629_SNP [dm6]	T	G	3.165e^-4	0.903	UPSTREAM Orc6 DOWNSTREAM Prosalpha7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2L	3628055	2L_3628055_SNP [dm3] 2L_3628055_SNP [dm6]	A	T	3.177e^-4	0.903	INTRON for
2R	12122347	2R_12122347_SNP [dm3] 2R_16234842_SNP [dm6]	G	A	3.181e^-4	0.903	NON_SYNONYMOUS_CODING CG7786 DOWNSTREAM CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5732741	2R_5732741_SNP [dm3] 2R_9845236_SNP [dm6]	A	T	3.181e^-4	0.903	DOWNSTREAM Orc6 INTRON CG1667
2R	5778612	2R_5778612_SNP [dm3] 2R_9891107_SNP [dm6]	G	A	3.184e^-4	0.903	UTR_3_PRIME CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
3L	7097305	3L_7097305_SNP [dm3] 3L_7104205_SNP [dm6]	T	G	3.186e^-4	0.903	INTRON form3
2L	4213596	2L_4213596_SNP [dm3] 2L_4213596_SNP [dm6]	T	G	3.186e^-4	0.903	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11661479	3R_11661479_SNP [dm3] 3R_15835757_SNP [dm6]	A	G	3.188e^-4	0.903	UTR_3_PRIME Arpc3A DOWNSTREAM ND23 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	3.202e^-4	0.903	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15458164	2L_15458164_SNP [dm3] 2L_15458164_SNP [dm6]	T	G	3.210e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18361075	2R_18361075_SNP [dm3] 2R_22473570_SNP [dm6]	C	T	3.215e^-4	0.903	DOWNSTREAM CG10384 INTRON CG45062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12226651	2L_12226651_SNP [dm3] 2L_12226651_SNP [dm6]	G	A	3.228e^-4	0.903	INTRON aret
X	18541368	X_18541368_SNP [dm3] X_18647335_SNP [dm6]	A	T	3.229e^-4	0.903	UTR_5_PRIME Rip11 UPSTREAM CG6540	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	3.234e^-4	0.903	INTRON RhoGEF64C
X	20320076	X_20320076_SNP [dm3] X_20449049_SNP [dm6]	C	T	3.240e^-4	0.903	UPSTREAM CG32506 INTERGENIC
2L	14905688	2L_14905688_SNP [dm3] 2L_14905688_SNP [dm6]	G	C	3.241e^-4	0.903	INTERGENIC
3R	14103149	3R_14103149_SNP [dm3] 3R_18277427_SNP [dm6]	A	G	3.245e^-4	0.903	DOWNSTREAM CG7142 INTRON eIF-1A
2R	15947469	2R_15947469_INS [dm3] 2R_20059964_INS [dm6]	T	TT	3.249e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17092373	2L_17092373_SNP [dm3] 2L_17092373_SNP [dm6]	C	T	3.254e^-4	0.903	INTERGENIC
2L	1241020	2L_1241020_INS [dm3] 2L_1241020_INS [dm6]	A	ATGATCTA	3.261e^-4	0.903	INTRON CG5397	TF binding site mE1_TFBS_chinmo
2R	6630373	2R_6630373_SNP [dm3] 2R_10742868_SNP [dm6]	T	G	3.269e^-4	0.903	INTRON CG33144
X	11566236	X_11566236_SNP [dm3] X_11672203_SNP [dm6]	T	C	3.276e^-4	0.903	INTRON Ptp10D	TF binding site mE1_TFBS_cad
2L	7398329	2L_7398329_SNP [dm3] 2L_7398329_SNP [dm6]	G	A	3.278e^-4	0.903	UTR_5_PRIME CG5160
2L	5929587	2L_5929587_DEL [dm3] 2L_5929587_DEL [dm6]	AA	G	3.291e^-4	0.903	INTRON dsf
2R	5735501	2R_5735501_SNP [dm3] 2R_9847996_SNP [dm6]	T	A	3.293e^-4	0.903	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	17597848	2R_17597848_SNP [dm3] 2R_21710343_SNP [dm6]	T	A	3.293e^-4	0.903	SYNONYMOUS_CODING CG30403 UPSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_dl
2L	14849332	2L_14849332_DEL [dm3] 2L_14849332_DEL [dm6]	GCATTGCCCTTTAGATACTG...	G	3.298e^-4	0.903	UPSTREAM CG15279 INTRON CG15279
3R	2148209	3R_2148209_SNP [dm3] 3R_6322487_SNP [dm6]	G	A	3.299e^-4	0.903	INTRON Osi17
2L	11879632	2L_11879632_SNP [dm3] 2L_11879632_SNP [dm6]	C	T	3.303e^-4	0.903	INTRON Pde1c
2L	16020319	2L_16020319_SNP [dm3] 2L_16020319_SNP [dm6]	C	G	3.313e^-4	0.903	INTRON beat-Ic
2L	13665279	2L_13665279_SNP [dm3] 2L_13665279_SNP [dm6]	G	T	3.318e^-4	0.903	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	8687477	3R_8687477_SNP [dm3] 3R_12861755_SNP [dm6]	A	G	3.323e^-4	0.903	INTERGENIC
3R	25823127	3R_25823127_SNP [dm3] 3R_29997405_SNP [dm6]	G	A	3.342e^-4	0.903	UPSTREAM CG11504 DOWNSTREAM Sas-6 INTRON CG15525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6395564	3L_6395564_SNP [dm3] 3L_6402464_SNP [dm6]	G	A	3.348e^-4	0.903	INTRON CG42747
2R	12419808	2R_12419808_INS [dm3] 2R_16532303_INS [dm6]	T	TT	3.353e^-4	0.903	INTRON Sema-2a
2L	2485819	2L_2485819_SNP [dm3] 2L_2485819_SNP [dm6]	G	C	3.354e^-4	0.903	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	16336629	2R_16336629_SNP [dm3] 2R_20449124_SNP [dm6]	G	C	3.355e^-4	0.903	INTRON CG12484	TF binding site mE1_TFBS_inv
3L	15996950	3L_15996950_SNP [dm3] 3L_16003850_SNP [dm6]	C	T	3.364e^-4	0.903	INTRON CG5830	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	25315932	3R_25315932_SNP [dm3] 3R_29490210_SNP [dm6]	A	G	3.364e^-4	0.903	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11136113	2R_11136113_SNP [dm3] 2R_15248608_SNP [dm6]	A	T	3.365e^-4	0.903	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	26387922	3R_26387922_SNP [dm3] 3R_30562200_SNP [dm6]	C	T	3.365e^-4	0.903	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	13965751	2R_13965751_SNP [dm3] 2R_18078246_SNP [dm6]	C	T	3.374e^-4	0.903	INTRON CG34386
3R	26099242	3R_26099242_SNP [dm3] 3R_30273520_SNP [dm6]	A	T	3.382e^-4	0.903	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	11554952	X_11554952_DEL [dm3] X_11660919_DEL [dm6]	CTTTATTATGTGTATTTCGA...	C	3.382e^-4	0.903	INTRON Ptp10D
X	11218298	X_11218298_SNP [dm3] X_11324265_SNP [dm6]	T	C	3.384e^-4	0.903	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	1228551	2L_1228551_SNP [dm3] 2L_1228551_SNP [dm6]	C	A	3.387e^-4	0.903	SYNONYMOUS_CODING CG42329
2L	17230370	2L_17230370_SNP [dm3] 2L_17230370_SNP [dm6]	C	T	3.391e^-4	0.903	INTRON beat-IIIc
2L	17676161	2L_17676161_SNP [dm3] 2L_17676161_SNP [dm6]	C	A	3.408e^-4	0.903	INTRON CadN
3L	4438540	3L_4438540_SNP [dm3] 3L_4438540_SNP [dm6]	C	T	3.408e^-4	0.903	DOWNSTREAM CG15021 INTERGENIC
3L	6316959	3L_6316959_SNP [dm3] 3L_6323859_SNP [dm6]	C	T	3.409e^-4	0.903	INTERGENIC
2L	3292364	2L_3292364_SNP [dm3] 2L_3292364_SNP [dm6]	A	G	3.409e^-4	0.903	UTR_3_PRIME CG9664 INTRON CG9664	TF binding site mE1_TFBS_cad
3R	16576220	3R_16576220_SNP [dm3] 3R_20750498_SNP [dm6]	T	A	3.412e^-4	0.903	INTRON CG42322
2R	12064581	2R_12064581_SNP [dm3] 2R_16177076_SNP [dm6]	G	A	3.413e^-4	0.903	INTRON Ptp52F
2R	6852795	2R_6852795_SNP [dm3] 2R_10965290_SNP [dm6]	C	A	3.415e^-4	0.903	INTERGENIC
2R	8926920	2R_8926920_SNP [dm3] 2R_13039415_SNP [dm6]	T	C	3.434e^-4	0.903	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	22959086	3R_22959086_SNP [dm3] 3R_27133364_SNP [dm6]	G	T	3.437e^-4	0.903	INTRON CG6051
2L	17331530	2L_17331530_DEL [dm3] 2L_17331530_DEL [dm6]	AATTTGTA	A	3.463e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	3.475e^-4	0.903	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5491280	3L_5491280_SNP [dm3] 3L_5498180_SNP [dm6]	A	C	3.491e^-4	0.903	SYNONYMOUS_CODING blanks	TF binding site mE1_TFBS_cnc
2L	8549187	2L_8549187_SNP [dm3] 2L_8549187_SNP [dm6]	C	G	3.492e^-4	0.903	INTRON Sema-1a
2L	4351311	2L_4351311_SNP [dm3] 2L_4351311_SNP [dm6]	C	T	3.499e^-4	0.903	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	21002782	2R_21002782_SNP [dm3] 2R_25115259_SNP [dm6]	C	T	3.508e^-4	0.903	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	10704259	2L_10704259_SNP [dm3] 2L_10704259_SNP [dm6]	A	T	3.511e^-4	0.903	SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo
2L	1433218	2L_1433218_SNP [dm3] 2L_1433218_SNP [dm6]	T	A	3.513e^-4	0.903	DOWNSTREAM snRNA:U3:22A INTERGENIC
2L	3069864	2L_3069864_SNP [dm3] 2L_3069864_SNP [dm6]	G	A	3.514e^-4	0.903	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	21008864	2R_21008864_DEL [dm3] 2R_25121341_DEL [dm6]	CA	C	3.539e^-4	0.903	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	18072684	2R_18072684_SNP [dm3] 2R_22185179_SNP [dm6]	T	C	3.539e^-4	0.903	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	17352084	2L_17352084_SNP [dm3] 2L_17352084_SNP [dm6]	A	T	3.551e^-4	0.903	INTERGENIC
2R	12028051	2R_12028051_SNP [dm3] 2R_16140546_SNP [dm6]	C	T	3.553e^-4	0.903	SYNONYMOUS_CODING Got1	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
X	3180321	X_3180321_SNP [dm3] X_3286288_SNP [dm6]	A	G	3.558e^-4	0.903	INTRON dnc
2L	2825666	2L_2825666_SNP [dm3] 2L_2825666_SNP [dm6]	T	A	3.560e^-4	0.903	UPSTREAM CG3123 INTRON Duox
X	13998839	X_13998839_SNP [dm3] X_14104806_SNP [dm6]	T	A	3.560e^-4	0.903	DOWNSTREAM tRNA:S774:12Ef INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	17099727	2R_17099727_SNP [dm3] 2R_21212222_SNP [dm6]	T	C	3.561e^-4	0.903	SYNONYMOUS_CODING CG44245 DOWNSTREAM CG4302
2R	11871447	2R_11871447_SNP [dm3] 2R_15983942_SNP [dm6]	T	C	3.565e^-4	0.903	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
2R	5785084	2R_5785084_SNP [dm3] 2R_9897579_SNP [dm6]	C	A	3.568e^-4	0.903	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11060379	3L_11060379_SNP [dm3] 3L_11067279_SNP [dm6]	G	A	3.571e^-4	0.903	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
3L	18304849	3L_18304849_SNP [dm3] 3L_18311749_SNP [dm6]	C	A	3.574e^-4	0.903	INTERGENIC
X	11566231	X_11566231_SNP [dm3] X_11672198_SNP [dm6]	G	C	3.576e^-4	0.903	INTRON Ptp10D	TF binding site mE1_TFBS_cad
2R	5790017	2R_5790017_SNP [dm3] 2R_9902512_SNP [dm6]	A	T	3.577e^-4	0.903	INTRON CG1441	TF binding site mE1_TFBS_cad
3R	15801003	3R_15801003_SNP [dm3] 3R_19975281_SNP [dm6]	C	A	3.584e^-4	0.903	NON_SYNONYMOUS_CODING CG31213 INTRON Hs6st
3L	10848541	3L_10848541_INS [dm3] 3L_10855441_INS [dm6]	A	ACACGCACACACACATAGT...	3.587e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16522330	3R_16522330_SNP [dm3] 3R_20696608_SNP [dm6]	G	T	3.593e^-4	0.903	INTRON Oamb
3R	16324707	3R_16324707_SNP [dm3] 3R_20498985_SNP [dm6]	G	A	3.601e^-4	0.903	INTERGENIC
2R	13966081	2R_13966081_DEL [dm3] 2R_18078576_DEL [dm6]	CCC	C	3.624e^-4	0.903	INTRON CG34386
2R	13184198	2R_13184198_SNP [dm3] 2R_17296693_SNP [dm6]	C	T	3.624e^-4	0.903	INTRON mbl
3L	5486796	3L_5486796_SNP [dm3] 3L_5493696_SNP [dm6]	G	T	3.633e^-4	0.903	EXON CR44520
2L	17330541	2L_17330541_SNP [dm3] 2L_17330541_SNP [dm6]	A	T	3.638e^-4	0.903	INTERGENIC
2R	21006120	2R_21006120_SNP [dm3] 2R_25118597_SNP [dm6]	A	G	3.639e^-4	0.903	INTRON lov
X	2635647	X_2635647_SNP [dm3] X_2741614_SNP [dm6]	C	T	3.646e^-4	0.903	SYNONYMOUS_CODING Syx4 INTRON kirre
3R	19066093	3R_19066093_SNP [dm3] 3R_23240371_SNP [dm6]	T	G	3.650e^-4	0.903	UPSTREAM CG4467 INTRON CG4467
3R	23858400	3R_23858400_SNP [dm3] 3R_28032678_SNP [dm6]	G	A	3.652e^-4	0.903	INTRON CG34362
2L	8549189	2L_8549189_SNP [dm3] 2L_8549189_SNP [dm6]	A	C	3.654e^-4	0.903	INTRON Sema-1a
3R	10119752	3R_10119752_SNP [dm3] 3R_14294030_SNP [dm6]	T	A	3.657e^-4	0.903	INTRON CG12207
2L	1255845	2L_1255845_SNP [dm3] 2L_1255845_SNP [dm6]	A	T	3.662e^-4	0.903	UPSTREAM robo3 INTERGENIC
3L	14189438	3L_14189438_SNP [dm3] 3L_14196338_SNP [dm6]	G	T	3.686e^-4	0.903	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13773408	3R_13773408_SNP [dm3] 3R_17947686_SNP [dm6]	T	C	3.690e^-4	0.903	INTRON cpo
2R	13189221	2R_13189221_SNP [dm3] 2R_17301716_SNP [dm6]	T	C	3.692e^-4	0.903	INTRON mbl
2R	20993444	2R_20993444_SNP [dm3] 2R_25105921_SNP [dm6]	T	C	3.696e^-4	0.903	INTRON lov
2R	15768802	2R_15768802_SNP [dm3] 2R_19881297_SNP [dm6]	T	G	3.701e^-4	0.903	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	26588949	3R_26588949_SNP [dm3] 3R_30763227_SNP [dm6]	G	A	3.705e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	13777414	2R_13777414_SNP [dm3] 2R_17889909_SNP [dm6]	C	G	3.708e^-4	0.903	UTR_5_PRIME PPO1 INTRON Elk
2R	14041460	2R_14041460_SNP [dm3] 2R_18153955_SNP [dm6]	G	T	3.708e^-4	0.903	UTR_3_PRIME adp DOWNSTREAM lolal	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15160751	2R_15160751_DEL [dm3] 2R_19273246_DEL [dm6]	GAA	G	3.708e^-4	0.903	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	15160757	2R_15160757_INS [dm3] 2R_19273252_INS [dm6]	C	CC	3.708e^-4	0.903	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	5785090	2R_5785090_SNP [dm3] 2R_9897585_SNP [dm6]	T	C	3.709e^-4	0.903	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10144138	3R_10144138_SNP [dm3] 3R_14318416_SNP [dm6]	C	T	3.710e^-4	0.903	SYNONYMOUS_CODING pr-set7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20486215	2R_20486215_SNP [dm3] 2R_24598692_SNP [dm6]	A	C	3.715e^-4	0.903	NON_SYNONYMOUS_CODING CG13587 DOWNSTREAM pio & 1 other
3R	23274004	3R_23274004_SNP [dm3] 3R_27448282_SNP [dm6]	C	T	3.720e^-4	0.903	INTERGENIC
3L	3892819	3L_3892819_SNP [dm3] 3L_3892819_SNP [dm6]	A	G	3.726e^-4	0.903	START_GAINED Fie UTR_5_PRIME Fie UPSTREAM CR45422 DOWNSTREAM snRNA:U11
X	17239304	X_17239304_SNP [dm3] X_17345271_SNP [dm6]	A	T	3.736e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8721223	3L_8721223_SNP [dm3] 3L_8728123_SNP [dm6]	C	A	3.736e^-4	0.903	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
2L	6304373	2L_6304373_SNP [dm3] 2L_6304373_SNP [dm6]	C	A	3.737e^-4	0.903	INTRON Ddr
2R	21018312	2R_21018312_INS [dm3] 2R_25130789_INS [dm6]	A	AATAAAAATAAACGGTGGTA...	3.737e^-4	0.903	DOWNSTREAM CG30430 INTRON lov
2L	13671315	2L_13671315_SNP [dm3] 2L_13671315_SNP [dm6]	C	A	3.746e^-4	0.903	DOWNSTREAM CG18507 INTRON CG18507
2R	13603019	2R_13603019_SNP [dm3] 2R_17715514_SNP [dm6]	G	C	3.746e^-4	0.903	INTRON CG6424	TF binding site BDTNP1_TFBS_dl
2R	21000655	2R_21000655_SNP [dm3] 2R_25113132_SNP [dm6]	A	C	3.749e^-4	0.903	INTRON lov	TF binding site mE1_TFBS_HSA
2R	18260231	2R_18260231_SNP [dm3] 2R_22372726_SNP [dm6]	A	G	3.752e^-4	0.903	DOWNSTREAM CR44759 INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17230371	2L_17230371_SNP [dm3] 2L_17230371_SNP [dm6]	T	C	3.753e^-4	0.903	INTRON beat-IIIc
2R	3777346	2R_3777346_SNP [dm3] 2R_7889841_SNP [dm6]	C	T	3.755e^-4	0.903	UPSTREAM CG30377 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7097362	3L_7097362_SNP [dm3] 3L_7104262_SNP [dm6]	T	G	3.758e^-4	0.903	INTRON form3
2L	2094111	2L_2094111_SNP [dm3] 2L_2094111_SNP [dm6]	A	C	3.764e^-4	0.903	INTRON dpr3	TF binding site BDTNP1_TFBS_twi
3L	10378368	3L_10378368_SNP [dm3] 3L_10385268_SNP [dm6]	G	A	3.780e^-4	0.903	INTERGENIC
X	5757237	X_5757237_SNP [dm3] X_5863204_SNP [dm6]	C	T	3.786e^-4	0.903	INTERGENIC
2L	4039632	2L_4039632_SNP [dm3] 2L_4039632_SNP [dm6]	T	G	3.793e^-4	0.903	INTRON ed
2L	17230469	2L_17230469_SNP [dm3] 2L_17230469_SNP [dm6]	C	T	3.794e^-4	0.903	INTRON beat-IIIc
3L	6395533	3L_6395533_SNP [dm3] 3L_6402433_SNP [dm6]	G	A	3.795e^-4	0.903	INTRON CG42747
2R	9686565	2R_9686565_SNP [dm3] 2R_13799060_SNP [dm6]	G	T	3.797e^-4	0.903	INTRON Cpr50Cb
2R	13184344	2R_13184344_SNP [dm3] 2R_17296839_SNP [dm6]	C	T	3.799e^-4	0.903	INTRON mbl
2L	12528905	2L_12528905_SNP [dm3] 2L_12528905_SNP [dm6]	G	A	3.799e^-4	0.903	INTRON bun	TF binding site BDTNP1_TFBS_dl
2R	11264106	2R_11264106_SNP [dm3] 2R_15376601_SNP [dm6]	T	C	3.802e^-4	0.903	UPSTREAM CR43105 & 1 other DOWNSTREAM dup INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	10544103	2L_10544103_SNP [dm3] 2L_10544103_SNP [dm6]	T	C	3.806e^-4	0.903	UPSTREAM CR44618 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	12249064	2R_12249064_SNP [dm3] 2R_16361559_SNP [dm6]	T	C	3.809e^-4	0.903	UPSTREAM CG6262 INTRON CG6262
3R	10192037	3R_10192037_SNP [dm3] 3R_14366315_SNP [dm6]	G	A	3.809e^-4	0.903	INTRON NK7.1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	11191049	2R_11191049_SNP [dm3] 2R_15303544_SNP [dm6]	A	G	3.811e^-4	0.903	INTRON Trpm
2L	1245050	2L_1245050_SNP [dm3] 2L_1245050_SNP [dm6]	G	A	3.815e^-4	0.903	INTERGENIC
2R	15758531	2R_15758531_SNP [dm3] 2R_19871026_SNP [dm6]	A	T	3.819e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	12050050	3L_12050050_SNP [dm3] 3L_12056950_SNP [dm6]	C	T	3.843e^-4	0.903	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13778621	2R_13778621_SNP [dm3] 2R_17891116_SNP [dm6]	C	A	3.848e^-4	0.903	INTRON Elk
3R	13466657	3R_13466657_SNP [dm3] 3R_17640935_SNP [dm6]	C	T	3.852e^-4	0.903	INTRON CG43175
2R	13916077	2R_13916077_SNP [dm3] 2R_18028572_SNP [dm6]	G	A	3.853e^-4	0.903	INTERGENIC
3R	22696172	3R_22696172_SNP [dm3] 3R_26870450_SNP [dm6]	A	G	3.857e^-4	0.903	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	7684261	2L_7684261_SNP [dm3] 2L_7684261_SNP [dm6]	A	G	3.864e^-4	0.903	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
2R	17600772	2R_17600772_SNP [dm3] 2R_21713267_SNP [dm6]	A	C	3.867e^-4	0.903	UPSTREAM HmgD INTRON HmgD	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	7680681	2R_7680681_SNP [dm3] 2R_11793176_SNP [dm6]	C	T	3.870e^-4	0.903	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	13507382	2R_13507382_SNP [dm3] 2R_17619877_SNP [dm6]	C	T	3.874e^-4	0.903	INTRON CG10936
3L	10378489	3L_10378489_SNP [dm3] 3L_10385389_SNP [dm6]	C	A	3.874e^-4	0.903	INTERGENIC
2R	15086523	2R_15086523_SNP [dm3] 2R_19199018_SNP [dm6]	G	C	3.880e^-4	0.903	INTRON hppy
2R	17603169	2R_17603169_SNP [dm3] 2R_21715664_SNP [dm6]	C	A	3.882e^-4	0.903	INTRON HmgD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10546024	2L_10546024_SNP [dm3] 2L_10546024_SNP [dm6]	C	G	3.898e^-4	0.903	SYNONYMOUS_CODING Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11284759	3R_11284759_SNP [dm3] 3R_15459037_SNP [dm6]	A	T	3.901e^-4	0.903	INTRON AdamTS-A
2L	13826067	2L_13826067_SNP [dm3] 2L_13826067_SNP [dm6]	G	A	3.902e^-4	0.903	NON_SYNONYMOUS_CODING tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	16524094	3R_16524094_SNP [dm3] 3R_20698372_SNP [dm6]	C	G	3.913e^-4	0.903	SYNONYMOUS_CODING Oamb	TF binding site mE1_TFBS_cad
3L	18996267	3L_18996267_SNP [dm3] 3L_19003167_SNP [dm6]	C	A	3.927e^-4	0.903	UTR_5_PRIME CG18136 DOWNSTREAM nkd
2R	12087184	2R_12087184_SNP [dm3] 2R_16199679_SNP [dm6]	C	G	3.930e^-4	0.903	UTR_3_PRIME shark DOWNSTREAM CG42837 & 1 other
3L	16336798	3L_16336798_INS [dm3] 3L_16343698_INS [dm6]	T	TGCCATTAGGAAA...	3.934e^-4	0.903	INTRON CG4998	TF binding site mE1_TFBS_cad
2L	5385812	2L_5385812_SNP [dm3] 2L_5385812_SNP [dm6]	G	A	3.938e^-4	0.903	INTERGENIC
3L	18304745	3L_18304745_SNP [dm3] 3L_18311645_SNP [dm6]	T	A	3.940e^-4	0.903	INTERGENIC
2R	10630895	2R_10630895_SNP [dm3] 2R_14743390_SNP [dm6]	G	A	3.940e^-4	0.903	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16710049	2R_16710049_SNP [dm3] 2R_20822544_SNP [dm6]	T	C	3.940e^-4	0.903	SYNONYMOUS_CODING insc
2R	19486648	2R_19486648_SNP [dm3] 2R_23599125_SNP [dm6]	G	A	3.954e^-4	0.903	UTR_3_PRIME apt DOWNSTREAM CG42559 & 1 other
2R	18189961	2R_18189961_SNP [dm3] 2R_22302456_SNP [dm6]	T	C	3.964e^-4	0.903	INTRON wdp	TF binding site BDTNP1_TFBS_da
2R	13916045	2R_13916045_SNP [dm3] 2R_18028540_SNP [dm6]	A	T	3.967e^-4	0.903	INTERGENIC
2R	14770128	2R_14770128_SNP [dm3] 2R_18882623_SNP [dm6]	A	C	3.969e^-4	0.903	INTRON sano
2R	20156803	2R_20156803_SNP [dm3] 2R_24269280_SNP [dm6]	T	G	3.973e^-4	0.903	UPSTREAM CG13577 INTERGENIC
2R	11277949	2R_11277949_SNP [dm3] 2R_15390444_SNP [dm6]	G	A	3.973e^-4	0.903	INTERGENIC
3L	10357987	3L_10357987_SNP [dm3] 3L_10364887_SNP [dm6]	A	T	4.004e^-4	0.903	UPSTREAM mir-276a EXON CR44327
2L	18735320	2L_18735320_SNP [dm3] 2L_18735320_SNP [dm6]	A	T	4.016e^-4	0.903	UPSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	16508072	3R_16508072_SNP [dm3] 3R_20682350_SNP [dm6]	T	G	4.016e^-4	0.903	INTERGENIC
3L	16583798	3L_16583798_SNP [dm3] 3L_16590698_SNP [dm6]	C	T	4.027e^-4	0.903	NON_SYNONYMOUS_CODING tra UTR_3_PRIME tra DOWNSTREAM l_3_73Ah & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11522362	2L_11522362_SNP [dm3] 2L_11522362_SNP [dm6]	C	T	4.029e^-4	0.903	SYNONYMOUS_CODING CG43153 DOWNSTREAM CG14929 & 1 other
2L	7174627	2L_7174627_SNP [dm3] 2L_7174627_SNP [dm6]	C	T	4.033e^-4	0.903	EXON CR44610
2L	12343662	2L_12343662_SNP [dm3] 2L_12343662_SNP [dm6]	C	T	4.038e^-4	0.903	UTR_3_PRIME CG43813 UPSTREAM bru-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15997885	3R_15997885_DEL [dm3] 3R_20172163_DEL [dm6]	CC	C	4.046e^-4	0.903	INTRON CG5023
3L	2686057	3L_2686057_SNP [dm3] 3L_2686057_SNP [dm6]	A	G	4.051e^-4	0.903	INTRON Fife
3R	7106758	3R_7106758_SNP [dm3] 3R_11281036_SNP [dm6]	A	T	4.053e^-4	0.903	INTRON CR31386
2R	17079031	2R_17079031_SNP [dm3] 2R_21191526_SNP [dm6]	A	G	4.054e^-4	0.903	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6775915	X_6775915_DEL [dm3] X_6881882_DEL [dm6]	ACA	A	4.054e^-4	0.903	DOWNSTREAM CG43736 INTERGENIC
2R	11292545	2R_11292545_SNP [dm3] 2R_15405040_SNP [dm6]	G	A	4.056e^-4	0.903	INTRON CG43729 EXON CR45020	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16123366	2R_16123366_SNP [dm3] 2R_20235861_SNP [dm6]	C	A	4.063e^-4	0.903	UTR_3_PRIME CG44625 UPSTREAM CG11099 DOWNSTREAM CG11044 & 1 other
3R	20563216	3R_20563216_SNP [dm3] 3R_24737494_SNP [dm6]	T	C	4.064e^-4	0.903	INTRON tok
2L	8316125	2L_8316125_SNP [dm3] 2L_8316125_SNP [dm6]	A	G	4.066e^-4	0.903	SPLICE_SITE_REGION CG7806 SYNONYMOUS_CODING CG7806 DOWNSTREAM mtsh
2R	8927242	2R_8927242_SNP [dm3] 2R_13039737_SNP [dm6]	G	A	4.068e^-4	0.903	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14004456	2L_14004456_SNP [dm3] 2L_14004456_SNP [dm6]	A	T	4.071e^-4	0.903	INTERGENIC
3R	13765223	3R_13765223_SNP [dm3] 3R_17939501_SNP [dm6]	C	T	4.081e^-4	0.903	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19866227	3R_19866227_SNP [dm3] 3R_24040505_SNP [dm6]	T	A	4.085e^-4	0.903	INTRON spas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12641282	3L_12641282_DEL [dm3] 3L_12648182_DEL [dm6]	TACTTACTTGTTACTTACAC...	T	4.087e^-4	0.903	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2L	1063000	2L_1063000_SNP [dm3] 2L_1063000_SNP [dm6]	A	G	4.088e^-4	0.903	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12566501	2R_12566501_SNP [dm3] 2R_16678996_SNP [dm6]	A	C	4.095e^-4	0.903	SYNONYMOUS_CODING CG30463
2R	7680680	2R_7680680_SNP [dm3] 2R_11793175_SNP [dm6]	C	T	4.103e^-4	0.903	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	20335235	X_20335235_SNP [dm3] X_20464208_SNP [dm6]	G	A	4.104e^-4	0.903	SYNONYMOUS_CODING CG32506
2R	16023570	2R_16023570_SNP [dm3] 2R_20136065_SNP [dm6]	A	G	4.109e^-4	0.903	DOWNSTREAM CR44634 INTERGENIC
2R	13966489	2R_13966489_SNP [dm3] 2R_18078984_SNP [dm6]	A	C	4.119e^-4	0.903	INTRON CG34386
3L	2552751	3L_2552751_SNP [dm3] 3L_2552751_SNP [dm6]	A	T	4.125e^-4	0.903	INTRON Spn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9465597	2L_9465597_SNP [dm3] 2L_9465597_SNP [dm6]	T	G	4.125e^-4	0.903	INTERGENIC
2R	5863129	2R_5863129_SNP [dm3] 2R_9975624_SNP [dm6]	C	G	4.131e^-4	0.903	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3L	11161745	3L_11161745_SNP [dm3] 3L_11168645_SNP [dm6]	T	C	4.134e^-4	0.903	SYNONYMOUS_CODING wls	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	15205326	2R_15205326_SNP [dm3] 2R_19317821_SNP [dm6]	C	T	4.152e^-4	0.903	INTRON Rgk1
2L	3885871	2L_3885871_SNP [dm3] 2L_3885871_SNP [dm6]	T	C	4.156e^-4	0.903	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	15552563	2R_15552563_SNP [dm3] 2R_19665058_SNP [dm6]	A	G	4.161e^-4	0.903	DOWNSTREAM hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
3R	19066082	3R_19066082_SNP [dm3] 3R_23240360_SNP [dm6]	G	T	4.164e^-4	0.903	UPSTREAM CG4467 INTRON CG4467
3L	12785093	3L_12785093_DEL [dm3] 3L_12791993_DEL [dm6]	TAT	T	4.166e^-4	0.903	INTRON Atg1 & 1 other
3R	23263305	3R_23263305_INS [dm3] 3R_27437583_INS [dm6]	T	TGCTGCT	4.179e^-4	0.903	UPSTREAM side INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11503981	2R_11503981_SNP [dm3] 2R_15616476_SNP [dm6]	G	A	4.180e^-4	0.903	INTRON CG42524
2R	15205290	2R_15205290_SNP [dm3] 2R_19317785_SNP [dm6]	T	C	4.180e^-4	0.903	INTRON Rgk1
2R	16160717	2R_16160717_SNP [dm3] 2R_20273212_SNP [dm6]	G	A	4.180e^-4	0.903	INTRON CG10444	TF binding site mE1_TFBS_cad
3R	23259539	3R_23259539_SNP [dm3] 3R_27433817_SNP [dm6]	G	A	4.182e^-4	0.903	INTRON side
3L	4579529	3L_4579529_SNP [dm3] 3L_4579529_SNP [dm6]	T	C	4.196e^-4	0.903	INTRON CG42540
2L	4996938	2L_4996938_SNP [dm3] 2L_4996938_SNP [dm6]	C	A	4.207e^-4	0.903	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	16232878	2L_16232878_SNP [dm3] 2L_16232878_SNP [dm6]	G	A	4.214e^-4	0.903	INTRON CG42817
3L	14189363	3L_14189363_SNP [dm3] 3L_14196263_SNP [dm6]	C	A	4.220e^-4	0.903	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	4.235e^-4	0.903	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	15776844	3R_15776844_SNP [dm3] 3R_19951122_SNP [dm6]	A	G	4.250e^-4	0.903	INTRON Hs6st
X	18539718	X_18539718_SNP [dm3] X_18645685_SNP [dm6]	A	T	4.254e^-4	0.903	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3549707	2L_3549707_SNP [dm3] 2L_3549707_SNP [dm6]	G	A	4.254e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	4438402	3L_4438402_SNP [dm3] 3L_4438402_SNP [dm6]	A	G	4.259e^-4	0.903	DOWNSTREAM CG15021 INTERGENIC
2L	3995507	2L_3995507_SNP [dm3] 2L_3995507_SNP [dm6]	T	C	4.262e^-4	0.903	INTERGENIC
3R	19066109	3R_19066109_SNP [dm3] 3R_23240387_SNP [dm6]	C	G	4.266e^-4	0.903	UPSTREAM CG4467 INTRON CG4467
2R	13515927	2R_13515927_SNP [dm3] 2R_17628422_SNP [dm6]	G	T	4.269e^-4	0.903	DOWNSTREAM rhi INTRON CG10936
2R	5789325	2R_5789325_SNP [dm3] 2R_9901820_SNP [dm6]	A	C	4.269e^-4	0.903	INTRON CG1441	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26086315	3R_26086315_SNP [dm3] 3R_30260593_SNP [dm6]	C	T	4.274e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	12477272	3R_12477272_SNP [dm3] 3R_16651550_SNP [dm6]	C	G	4.276e^-4	0.903	UTR_3_PRIME CG14907 UPSTREAM CG14906 DOWNSTREAM modSP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	14042256	2L_14042256_SNP [dm3] 2L_14042256_SNP [dm6]	G	T	4.298e^-4	0.903	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
X	3142641	X_3142641_SNP [dm3] X_3248608_SNP [dm6]	T	A	4.303e^-4	0.903	UTR_3_PRIME Pig1 UPSTREAM Sgs4 INTRON dnc
X	14335700	X_14335700_SNP [dm3] X_14441667_SNP [dm6]	C	A	4.304e^-4	0.903	INTRON dpr8
3R	16763317	3R_16763317_SNP [dm3] 3R_20937595_SNP [dm6]	G	A	4.322e^-4	0.903	INTRON CG31191
2R	16123454	2R_16123454_SNP [dm3] 2R_20235949_SNP [dm6]	A	G	4.325e^-4	0.903	UPSTREAM CG11099 DOWNSTREAM CG44624 & 1 other INTERGENIC
2R	13809046	2R_13809046_INS [dm3] 2R_17921541_INS [dm6]	A	AA	4.326e^-4	0.903	INTRON Elk
X	3180327	X_3180327_SNP [dm3] X_3286294_SNP [dm6]	T	A	4.331e^-4	0.903	INTRON dnc
X	6690073	X_6690073_SNP [dm3] X_6796040_SNP [dm6]	C	T	4.346e^-4	0.903	UPSTREAM C3G INTRON C3G
2R	14872950	2R_14872950_SNP [dm3] 2R_18985445_SNP [dm6]	A	T	4.348e^-4	0.903	INTERGENIC
X	19194035	X_19194035_SNP [dm3] X_19300002_SNP [dm6]	T	G	4.352e^-4	0.903	INTERGENIC
3L	10948604	3L_10948604_SNP [dm3] 3L_10955504_SNP [dm6]	C	T	4.356e^-4	0.903	INTERGENIC
2L	3505633	2L_3505633_SNP [dm3] 2L_3505633_SNP [dm6]	T	G	4.356e^-4	0.903	INTRON tim	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18697202	3L_18697202_SNP [dm3] 3L_18704102_SNP [dm6]	C	T	4.357e^-4	0.903	INTERGENIC
2L	22314945	2L_22314945_SNP [dm3] 2L_22314945_SNP [dm6]	C	T	4.362e^-4	0.903	INTRON CG17018
3R	23801883	3R_23801883_SNP [dm3] 3R_27976161_SNP [dm6]	G	C	4.366e^-4	0.903	INTRON betaTub97EF
2L	17169779	2L_17169779_MNP [dm3] 2L_17169779_MNP [dm6]	TGC	ATT	4.366e^-4	0.903	INTRON beat-IIIa & 1 other
2R	18260119	2R_18260119_SNP [dm3] 2R_22372614_SNP [dm6]	T	C	4.377e^-4	0.903	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2L	18550296	2L_18550296_SNP [dm3] 2L_18550296_SNP [dm6]	T	C	4.389e^-4	0.903	INTRON Pde11
2L	8888903	2L_8888903_SNP [dm3] 2L_8888903_SNP [dm6]	A	G	4.389e^-4	0.903	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2R	5777768	2R_5777768_DEL [dm3] 2R_9890263_DEL [dm6]	AGACCTTTAA	A	4.393e^-4	0.903	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
2L	7696702	2L_7696702_SNP [dm3] 2L_7696702_SNP [dm6]	A	C	4.400e^-4	0.903	NON_SYNONYMOUS_CODING Tep2 INTRON Tep2
3L	11873118	3L_11873118_SNP [dm3] 3L_11880018_SNP [dm6]	C	T	4.400e^-4	0.903	SYNONYMOUS_CODING CG14128 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15961436	3R_15961436_SNP [dm3] 3R_20135714_SNP [dm6]	T	C	4.416e^-4	0.903	INTERGENIC
2R	13916050	2R_13916050_SNP [dm3] 2R_18028545_SNP [dm6]	T	G	4.422e^-4	0.903	INTERGENIC
3R	14090885	3R_14090885_SNP [dm3] 3R_18265163_SNP [dm6]	A	G	4.427e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8111229	2L_8111229_SNP [dm3] 2L_8111229_SNP [dm6]	G	A	4.430e^-4	0.903	UTR_3_PRIME Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13100947	2L_13100947_DEL [dm3] 2L_13100947_DEL [dm6]	TT	T	4.431e^-4	0.903	INTERGENIC
3L	13060457	3L_13060457_SNP [dm3] 3L_13067357_SNP [dm6]	G	A	4.432e^-4	0.903	INTERGENIC
2L	4649060	2L_4649060_SNP [dm3] 2L_4649060_SNP [dm6]	T	C	4.439e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13181263	2R_13181263_SNP [dm3] 2R_17293758_SNP [dm6]	G	A	4.450e^-4	0.903	INTRON mbl
2R	11750944	2R_11750944_SNP [dm3] 2R_15863439_SNP [dm6]	T	C	4.461e^-4	0.903	UPSTREAM Gpo-1 DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25862628	3R_25862628_SNP [dm3] 3R_30036906_SNP [dm6]	T	C	4.463e^-4	0.903	UPSTREAM CG7928 DOWNSTREAM ocn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	18541370	X_18541370_SNP [dm3] X_18647337_SNP [dm6]	A	T	4.465e^-4	0.903	UTR_5_PRIME Rip11 UPSTREAM CG6540	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	4758889	2R_4758889_SNP [dm3] 2R_8871384_SNP [dm6]	T	G	4.471e^-4	0.903	INTRON RyR
2R	4758901	2R_4758901_SNP [dm3] 2R_8871396_SNP [dm6]	C	T	4.471e^-4	0.903	INTRON RyR
3L	14709758	3L_14709758_SNP [dm3] 3L_14716658_SNP [dm6]	T	C	4.474e^-4	0.903	INTRON ome	regulatory region REDfly_CRMs
2L	1101647	2L_1101647_SNP [dm3] 2L_1101647_SNP [dm6]	T	A	4.477e^-4	0.903	INTRON CG4629
2L	16714981	2L_16714981_INS [dm3] 2L_16714981_INS [dm6]	G	GC	4.480e^-4	0.903	UPSTREAM Cyt-c-d INTRON CG31808
2R	13852538	2R_13852538_SNP [dm3] 2R_17965033_SNP [dm6]	G	C	4.482e^-4	0.903	INTERGENIC
3L	1589711	3L_1589711_SNP [dm3] 3L_1589711_SNP [dm6]	T	C	4.484e^-4	0.903	INTRON CG13917
X	11566238	X_11566238_DEL [dm3] X_11672205_DEL [dm6]	TTACTCG	A	4.486e^-4	0.903	INTRON Ptp10D	TF binding site mE1_TFBS_cad
3L	4737909	3L_4737909_SNP [dm3] 3L_4737909_SNP [dm6]	G	A	4.504e^-4	0.903	INTRON RhoGEF64C
3R	14771941	3R_14771941_SNP [dm3] 3R_18946219_SNP [dm6]	C	T	4.512e^-4	0.903	INTRON CG42613
2L	5386486	2L_5386486_SNP [dm3] 2L_5386486_SNP [dm6]	G	A	4.516e^-4	0.903	INTERGENIC
2R	8594853	2R_8594853_SNP [dm3] 2R_12707348_SNP [dm6]	T	C	4.520e^-4	0.903	INTRON CG42663
2L	3082522	2L_3082522_SNP [dm3] 2L_3082522_SNP [dm6]	G	A	4.523e^-4	0.903	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17352092	2L_17352092_SNP [dm3] 2L_17352092_SNP [dm6]	A	G	4.523e^-4	0.903	INTERGENIC
2L	3082524	2L_3082524_SNP [dm3] 2L_3082524_SNP [dm6]	T	G	4.525e^-4	0.903	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7705127	3L_7705127_SNP [dm3] 3L_7712027_SNP [dm6]	T	G	4.526e^-4	0.903	INTRON CG32373 & 1 other
3R	17099014	3R_17099014_SNP [dm3] 3R_21273292_SNP [dm6]	T	A	4.531e^-4	0.903	DOWNSTREAM CG3301 INTRON CG3308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6825137	2R_6825137_SNP [dm3] 2R_10937632_SNP [dm6]	C	T	4.538e^-4	0.903	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4144161	3L_4144161_SNP [dm3] 3L_4144161_SNP [dm6]	A	G	4.550e^-4	0.903	INTRON CG32260
X	3265418	X_3265418_SNP [dm3] X_3371385_SNP [dm6]	G	T	4.552e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5768415	2R_5768415_SNP [dm3] 2R_9880910_SNP [dm6]	G	C	4.557e^-4	0.903	NON_SYNONYMOUS_CODING Sec24AB UPSTREAM CR45467	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	14294812	3L_14294812_SNP [dm3] 3L_14301712_SNP [dm6]	T	A	4.572e^-4	0.903	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12563473	2R_12563473_SNP [dm3] 2R_16675968_SNP [dm6]	C	T	4.572e^-4	0.903	INTRON CG30463
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	4.576e^-4	0.903	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6853015	2R_6853015_SNP [dm3] 2R_10965510_SNP [dm6]	C	A	4.584e^-4	0.903	INTERGENIC
2R	17076810	2R_17076810_SNP [dm3] 2R_21189305_SNP [dm6]	C	T	4.585e^-4	0.903	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
X	7981510	X_7981510_INS [dm3] X_8087477_INS [dm6]	T	TT	4.589e^-4	0.903	UPSTREAM CG2256 DOWNSTREAM Ubc-E2H INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17866861	X_17866861_SNP [dm3] X_17972828_SNP [dm6]	G	A	4.594e^-4	0.903	INTRON Sh
2R	9579274	2R_9579274_SNP [dm3] 2R_13691769_SNP [dm6]	G	A	4.595e^-4	0.903	UTR_3_PRIME CG6220 INTRON fas
2L	1063012	2L_1063012_SNP [dm3] 2L_1063012_SNP [dm6]	T	A	4.601e^-4	0.903	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8676844	3L_8676844_SNP [dm3] 3L_8683744_SNP [dm6]	G	C	4.602e^-4	0.903	INTERGENIC
2R	5901187	2R_5901187_SNP [dm3] 2R_10013682_SNP [dm6]	G	A	4.605e^-4	0.903	INTRON Pka-R2
2R	1076441	2R_1076441_SNP [dm3] 2R_5188936_SNP [dm6]	T	C	4.611e^-4	0.903	INTRON Nipped-A
2L	15458421	2L_15458421_SNP [dm3] 2L_15458421_SNP [dm6]	T	G	4.620e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	11566147	X_11566147_SNP [dm3] X_11672114_SNP [dm6]	C	T	4.621e^-4	0.903	INTRON Ptp10D
2R	14219986	2R_14219986_SNP [dm3] 2R_18332481_SNP [dm6]	C	T	4.626e^-4	0.903	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2R	11976657	2R_11976657_SNP [dm3] 2R_16089152_SNP [dm6]	C	T	4.635e^-4	0.903	SYNONYMOUS_CODING Dg
3L	4058442	3L_4058442_SNP [dm3] 3L_4058442_SNP [dm6]	G	A	4.635e^-4	0.903	NON_SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	12462115	2L_12462115_SNP [dm3] 2L_12462115_SNP [dm6]	A	G	4.643e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3514792	2L_3514792_SNP [dm3] 2L_3514792_SNP [dm6]	C	T	4.660e^-4	0.903	UPSTREAM CG17593 & 1 other INTERGENIC
2L	21292330	2L_21292330_SNP [dm3] 2L_21292330_SNP [dm6]	T	C	4.665e^-4	0.903	SYNONYMOUS_CODING Gr39a INTRON Mio & 1 other
2L	21307615	2L_21307615_SNP [dm3] 2L_21307615_SNP [dm6]	C	A	4.665e^-4	0.903	INTRON Mio
2L	21309678	2L_21309678_SNP [dm3] 2L_21309678_SNP [dm6]	T	C	4.665e^-4	0.903	UTR_5_PRIME Mio UPSTREAM Mio INTRON Mio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	20357356	3L_20357356_SNP [dm3] 3L_20364256_SNP [dm6]	G	A	4.672e^-4	0.903	INTRON Toll-9
3L	6497205	3L_6497205_SNP [dm3] 3L_6504105_SNP [dm6]	A	G	4.675e^-4	0.903	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3R	26387812	3R_26387812_SNP [dm3] 3R_30562090_SNP [dm6]	C	T	4.677e^-4	0.903	INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	10676138	X_10676138_SNP [dm3] X_10782105_SNP [dm6]	C	T	4.687e^-4	0.903	INTRON Ant2 & 1 other	TF binding site mE1_TFBS_sens
3L	13300412	3L_13300412_SNP [dm3] 3L_13307312_SNP [dm6]	C	T	4.689e^-4	0.903	INTERGENIC
3R	18331492	3R_18331492_SNP [dm3] 3R_22505770_SNP [dm6]	C	T	4.699e^-4	0.903	INTRON Octbeta1R
3L	5953573	3L_5953573_SNP [dm3] 3L_5960473_SNP [dm6]	G	C	4.704e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	2447128	2R_2447128_SNP [dm3] 2R_6559623_SNP [dm6]	G	A	4.718e^-4	0.903	INTRON jing
2R	15205344	2R_15205344_SNP [dm3] 2R_19317839_SNP [dm6]	G	C	4.723e^-4	0.903	INTRON Rgk1
2R	16000781	2R_16000781_SNP [dm3] 2R_20113276_SNP [dm6]	C	A	4.732e^-4	0.903	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26588976	3R_26588976_SNP [dm3] 3R_30763254_SNP [dm6]	C	T	4.734e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	13193426	2L_13193426_SNP [dm3] 2L_13193426_SNP [dm6]	G	T	4.735e^-4	0.903	INTRON Edem2	TF binding site mE1_TFBS_cad
3R	12638094	3R_12638094_SNP [dm3] 3R_16812372_SNP [dm6]	T	C	4.736e^-4	0.903	INTRON abd-A	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	13887557	2L_13887557_SNP [dm3] 2L_13887557_SNP [dm6]	A	T	4.738e^-4	0.903	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	15485063	3R_15485063_SNP [dm3] 3R_19659341_SNP [dm6]	A	G	4.741e^-4	0.903	UPSTREAM ort INTERGENIC
3R	17399563	3R_17399563_SNP [dm3] 3R_21573841_SNP [dm6]	T	C	4.750e^-4	0.903	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad
2R	13512518	2R_13512518_SNP [dm3] 2R_17625013_SNP [dm6]	G	T	4.753e^-4	0.903	INTRON CG10936
3R	10290315	3R_10290315_SNP [dm3] 3R_14464593_SNP [dm6]	A	C	4.754e^-4	0.903	INTRON cv-c
2R	13966043	2R_13966043_SNP [dm3] 2R_18078538_SNP [dm6]	C	T	4.755e^-4	0.903	INTRON CG34386
2L	8323962	2L_8323962_SNP [dm3] 2L_8323962_SNP [dm6]	C	T	4.759e^-4	0.903	INTRON CG7781
3R	14091055	3R_14091055_SNP [dm3] 3R_18265333_SNP [dm6]	G	T	4.759e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5417859	2L_5417859_SNP [dm3] 2L_5417859_SNP [dm6]	T	A	4.770e^-4	0.903	INTERGENIC
2L	9827403	2L_9827403_SNP [dm3] 2L_9827403_SNP [dm6]	T	A	4.770e^-4	0.903	INTRON nAChRalpha6
2L	5515625	2L_5515625_SNP [dm3] 2L_5515625_SNP [dm6]	C	T	4.772e^-4	0.903	INTERGENIC
2R	15389418	2R_15389418_SNP [dm3] 2R_19501913_SNP [dm6]	G	A	4.782e^-4	0.903	UPSTREAM CG16926 INTERGENIC
2L	14677155	2L_14677155_SNP [dm3] 2L_14677155_SNP [dm6]	A	T	4.790e^-4	0.903	INTRON osp
2L	1228611	2L_1228611_SNP [dm3] 2L_1228611_SNP [dm6]	C	T	4.800e^-4	0.903	SYNONYMOUS_CODING CG42329
3R	11835415	3R_11835415_SNP [dm3] 3R_16009693_SNP [dm6]	C	T	4.803e^-4	0.903	INTRON GATAe
2R	9163342	2R_9163342_SNP [dm3] 2R_13275837_SNP [dm6]	T	A	4.821e^-4	0.903	INTRON Dh31-R
X	5164281	X_5164281_SNP [dm3] X_5270248_SNP [dm6]	A	G	4.821e^-4	0.903	INTERGENIC
2R	18543124	2R_18543124_SNP [dm3] 2R_22655619_SNP [dm6]	G	A	4.822e^-4	0.903	UTR_3_PRIME CG43326 & 1 other UPSTREAM CR45268 & 1 other DOWNSTREAM CG43325	TF binding site mE1_TFBS_cad
X	16868262	X_16868262_SNP [dm3] X_16974229_SNP [dm6]	G	A	4.825e^-4	0.903	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	2599125	2L_2599125_SNP [dm3] 2L_2599125_SNP [dm6]	A	G	4.842e^-4	0.903	INTRON CR44790
3R	15462287	3R_15462287_SNP [dm3] 3R_19636565_SNP [dm6]	C	T	4.852e^-4	0.903	NON_SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
2R	10330805	2R_10330805_SNP [dm3] 2R_14443300_SNP [dm6]	A	G	4.856e^-4	0.903	INTRON Oaz
2R	14872858	2R_14872858_SNP [dm3] 2R_18985353_SNP [dm6]	T	C	4.857e^-4	0.903	INTERGENIC
2L	15458230	2L_15458230_SNP [dm3] 2L_15458230_SNP [dm6]	G	C	4.859e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	17318120	3R_17318120_SNP [dm3] 3R_21492398_SNP [dm6]	G	A	4.882e^-4	0.903	INTERGENIC
3R	16820990	3R_16820990_SNP [dm3] 3R_20995268_SNP [dm6]	T	C	4.893e^-4	0.903	INTRON Calx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6244389	2L_6244389_SNP [dm3] 2L_6244389_SNP [dm6]	G	T	4.894e^-4	0.903	INTERGENIC
2R	1599292	2R_1599292_INS [dm3] 2R_5711787_INS [dm6]	T	TATAAT	4.895e^-4	0.903	INTRON ap	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26588967	3R_26588967_SNP [dm3] 3R_30763245_SNP [dm6]	C	G	4.902e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	9999054	3L_9999054_SNP [dm3] 3L_10005954_SNP [dm6]	G	A	4.905e^-4	0.903	INTRON dpr6
2R	11612404	2R_11612404_SNP [dm3] 2R_15724899_SNP [dm6]	C	T	4.907e^-4	0.903	INTERGENIC
3L	20546387	3L_20546387_SNP [dm3] 3L_20553287_SNP [dm6]	A	G	4.911e^-4	0.903	INTERGENIC
3R	16899060	3R_16899060_DEL [dm3] 3R_21073338_DEL [dm6]	TGT	T	4.912e^-4	0.903	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	9986209	3R_9986209_SNP [dm3] 3R_14160487_SNP [dm6]	G	A	4.914e^-4	0.903	UPSTREAM CG31327 INTERGENIC
X	8890078	X_8890078_SNP [dm3] X_8996045_SNP [dm6]	C	A	4.922e^-4	0.903	INTRON rdgA & 1 other
3L	15623022	3L_15623022_SNP [dm3] 3L_15629922_SNP [dm6]	C	T	4.923e^-4	0.903	INTRON comm3
3R	11266303	3R_11266303_SNP [dm3] 3R_15440581_SNP [dm6]	A	T	4.930e^-4	0.903	INTRON Act88F	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	14992538	3L_14992538_SNP [dm3] 3L_14999438_SNP [dm6]	A	G	4.931e^-4	0.903	UPSTREAM Prosbeta2 INTRON mRpL39	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	11751600	2R_11751600_SNP [dm3] 2R_15864095_SNP [dm6]	G	C	4.959e^-4	0.903	DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8507338	2L_8507338_SNP [dm3] 2L_8507338_SNP [dm6]	G	C	4.964e^-4	0.903	UPSTREAM Dh31 INTERGENIC
2R	10529814	2R_10529814_SNP [dm3] 2R_14642309_SNP [dm6]	T	G	4.964e^-4	0.903	INTERGENIC
2R	9123769	2R_9123769_SNP [dm3] 2R_13236264_SNP [dm6]	C	A	4.964e^-4	0.903	UPSTREAM CG4670 DOWNSTREAM CG4679 INTRON CG4676	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13919968	2R_13919968_SNP [dm3] 2R_18032463_SNP [dm6]	G	A	4.966e^-4	0.903	INTERGENIC
2R	13919973	2R_13919973_SNP [dm3] 2R_18032468_SNP [dm6]	G	A	4.966e^-4	0.903	INTERGENIC
2L	5387420	2L_5387420_SNP [dm3] 2L_5387420_SNP [dm6]	T	A	4.967e^-4	0.903	UPSTREAM CR44745 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11267739	2R_11267739_SNP [dm3] 2R_15380234_SNP [dm6]	T	G	4.974e^-4	0.903	UPSTREAM SRPK INTRON dup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5545870	2L_5545870_SNP [dm3] 2L_5545870_SNP [dm6]	G	C	4.975e^-4	0.903	UTR_3_PRIME Lam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	5510524	3L_5510524_SNP [dm3] 3L_5517424_SNP [dm6]	A	C	4.985e^-4	0.903	INTRON Lkr
2R	15361948	2R_15361948_SNP [dm3] 2R_19474443_SNP [dm6]	T	C	4.990e^-4	0.903	INTRON par-1
2R	15981268	2R_15981268_SNP [dm3] 2R_20093763_SNP [dm6]	C	T	4.994e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10358799	3L_10358799_SNP [dm3] 3L_10365699_SNP [dm6]	T	C	4.997e^-4	0.903	DOWNSTREAM mir-276a EXON CR44327	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	18304853	3L_18304853_SNP [dm3] 3L_18311753_SNP [dm6]	T	C	4.998e^-4	0.903	INTERGENIC
3L	15173757	3L_15173757_SNP [dm3] 3L_15180657_SNP [dm6]	C	G	5.009e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_inv

By genomic position
Variant impact
Gene name

Cuticul_7_C27_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results