DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.034e^-21)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	<

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	11.5993	0.003
In_3R_K	29.4214	4.0853e-07

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2374 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	16899149	3R_16899149_SNP [dm3] 3R_21073427_SNP [dm6]	C	T	1.725e^-7	0.323	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	11442707	2L_11442707_SNP [dm3] 2L_11442707_SNP [dm6]	A	C	7.148e^-7	0.449	INTRON salm
2L	19437195	2L_19437195_SNP [dm3] 2L_19437195_SNP [dm6]	C	A	7.189e^-7	0.449	INTRON CG10237
3L	13880697	3L_13880697_SNP [dm3] 3L_13887597_SNP [dm6]	G	C	1.083e^-6	0.462	INTRON dysc
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	1.232e^-6	0.462	INTRON salm
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	1.666e^-6	0.499	INTRON salm
2L	11442875	2L_11442875_DEL [dm3] 2L_11442875_DEL [dm6]	CAC	T	2.280e^-6	0.499	INTRON salm
3L	13382915	3L_13382915_SNP [dm3] 3L_13389815_SNP [dm6]	C	T	2.306e^-6	0.499	NON_SYNONYMOUS_CODING Poc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	16899060	3R_16899060_DEL [dm3] 3R_21073338_DEL [dm6]	TGT	T	2.395e^-6	0.499	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	455234	3L_455234_SNP [dm3] 3L_455234_SNP [dm6]	C	G	2.901e^-6	0.505	INTRON klar
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	2.963e^-6	0.505	INTRON salm
2L	11442910	2L_11442910_INS [dm3] 2L_11442910_INS [dm6]	A	ATGGCTT	3.443e^-6	0.523	INTRON salm
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	3.917e^-6	0.523	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9356644	3R_9356644_SNP [dm3] 3R_13530922_SNP [dm6]	T	C	4.169e^-6	0.523	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13383103	3L_13383103_SNP [dm3] 3L_13390003_SNP [dm6]	T	C	4.185e^-6	0.523	UTR_5_PRIME Poc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11442809	2L_11442809_SNP [dm3] 2L_11442809_SNP [dm6]	A	C	4.466e^-6	0.524	INTRON salm
2R	3262376	2R_3262376_SNP [dm3] 2R_7374871_SNP [dm6]	G	C	5.193e^-6	0.524	INTRON Dscam1	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3L	1354785	3L_1354785_SNP [dm3] 3L_1354785_SNP [dm6]	A	G	5.258e^-6	0.524	INTRON Ptp61F
3L	1608470	3L_1608470_SNP [dm3] 3L_1608470_SNP [dm6]	C	A	5.307e^-6	0.524	INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1288372	3L_1288372_SNP [dm3] 3L_1288372_SNP [dm6]	G	C	6.274e^-6	0.588	DOWNSTREAM CG32333 INTRON CG32333
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	7.418e^-6	0.653	INTRON salm
2R	8109725	2R_8109725_SNP [dm3] 2R_12222220_SNP [dm6]	G	C	7.665e^-6	0.653	INTERGENIC
3R	7734002	3R_7734002_SNP [dm3] 3R_11908280_SNP [dm6]	A	C	8.577e^-6	0.658	INTRON Cad87A
2R	9583032	2R_9583032_SNP [dm3] 2R_13695527_SNP [dm6]	C	A	8.592e^-6	0.658	INTRON fas
3L	13383015	3L_13383015_SNP [dm3] 3L_13389915_SNP [dm6]	C	T	8.769e^-6	0.658	UTR_5_PRIME Poc1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9583248	2R_9583248_SNP [dm3] 2R_13695743_SNP [dm6]	T	C	1.023e^-5	0.658	INTRON fas
3R	24700490	3R_24700490_SNP [dm3] 3R_28874768_SNP [dm6]	C	T	1.024e^-5	0.658	SYNONYMOUS_CODING CG14529 UPSTREAM CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1354853	3L_1354853_SNP [dm3] 3L_1354853_SNP [dm6]	G	C	1.065e^-5	0.658	INTRON Ptp61F
2L	5717452	2L_5717452_SNP [dm3] 2L_5717452_SNP [dm6]	G	T	1.070e^-5	0.658	UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
3R	6628348	3R_6628348_SNP [dm3] 3R_10802626_SNP [dm6]	T	A	1.134e^-5	0.658	INTRON CG14692
3R	9828059	3R_9828059_SNP [dm3] 3R_14002337_SNP [dm6]	A	G	1.182e^-5	0.658	INTRON rdx
3L	13383275	3L_13383275_SNP [dm3] 3L_13390175_SNP [dm6]	T	A	1.207e^-5	0.658	UPSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11468478	2L_11468478_SNP [dm3] 2L_11468478_SNP [dm6]	C	T	1.225e^-5	0.658	INTERGENIC
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	1.245e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11442729	2L_11442729_SNP [dm3] 2L_11442729_SNP [dm6]	C	T	1.324e^-5	0.658	INTRON salm
3L	1354859	3L_1354859_SNP [dm3] 3L_1354859_SNP [dm6]	A	G	1.372e^-5	0.658	INTRON Ptp61F
3R	9721237	3R_9721237_SNP [dm3] 3R_13895515_SNP [dm6]	T	A	1.373e^-5	0.658	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8964458	2R_8964458_INS [dm3] 2R_13076953_INS [dm6]	G	TATTTAGTT	1.380e^-5	0.658	INTRON Drl-2
2L	7448188	2L_7448188_SNP [dm3] 2L_7448188_SNP [dm6]	G	A	1.456e^-5	0.658	UTR_5_PRIME santa-maria INTRON santa-maria
2R	20480646	2R_20480646_SNP [dm3] 2R_24593123_SNP [dm6]	A	T	1.469e^-5	0.658	DOWNSTREAM pio INTRON pio
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	1.501e^-5	0.658	INTRON Octbeta3R
3R	16351460	3R_16351460_SNP [dm3] 3R_20525738_SNP [dm6]	C	T	1.532e^-5	0.658	INTERGENIC
3R	16899264	3R_16899264_SNP [dm3] 3R_21073542_SNP [dm6]	G	T	1.711e^-5	0.658	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	6616901	3R_6616901_SNP [dm3] 3R_10791179_SNP [dm6]	T	G	1.714e^-5	0.658	DOWNSTREAM Mcm5 INTERGENIC	regulatory region REDfly_CRMs
2R	11248676	2R_11248676_SNP [dm3] 2R_15361171_SNP [dm6]	C	T	1.738e^-5	0.658	INTRON unc-5
X	15214671	X_15214671_SNP [dm3] X_15320638_SNP [dm6]	C	T	1.811e^-5	0.658	START_GAINED Top1 UTR_5_PRIME Top1 UPSTREAM mir-4957 INTRON Top1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1354828	3L_1354828_SNP [dm3] 3L_1354828_SNP [dm6]	A	G	1.830e^-5	0.658	INTRON Ptp61F
2L	1478024	2L_1478024_SNP [dm3] 2L_1478024_SNP [dm6]	A	G	1.854e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	7049962	2R_7049962_SNP [dm3] 2R_11162457_SNP [dm6]	T	C	1.886e^-5	0.658	INTRON shn & 1 other
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	1.914e^-5	0.658	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
2L	11442474	2L_11442474_SNP [dm3] 2L_11442474_SNP [dm6]	C	A	1.915e^-5	0.658	INTRON salm
3R	7729799	3R_7729799_SNP [dm3] 3R_11904077_SNP [dm6]	C	T	1.918e^-5	0.658	INTRON Cad87A
2L	11442850	2L_11442850_SNP [dm3] 2L_11442850_SNP [dm6]	G	C	2.030e^-5	0.658	INTRON salm
3R	7734023	3R_7734023_SNP [dm3] 3R_11908301_SNP [dm6]	C	G	2.037e^-5	0.658	INTRON Cad87A
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	2.067e^-5	0.658	INTRON salm
2L	2575619	2L_2575619_SNP [dm3] 2L_2575619_SNP [dm6]	C	A	2.147e^-5	0.658	SYNONYMOUS_CODING insv UPSTREAM Rad1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	8964440	2R_8964440_SNP [dm3] 2R_13076935_SNP [dm6]	A	G	2.181e^-5	0.658	INTRON Drl-2
2R	18590251	2R_18590251_SNP [dm3] 2R_22702746_SNP [dm6]	T	C	2.233e^-5	0.658	SYNONYMOUS_CODING Obp59a INTRON CG30259
3R	14030411	3R_14030411_SNP [dm3] 3R_18204689_SNP [dm6]	G	A	2.244e^-5	0.658	INTRON CG7985
3R	16899208	3R_16899208_SNP [dm3] 3R_21073486_SNP [dm6]	A	T	2.276e^-5	0.658	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	19664210	2R_19664210_SNP [dm3] 2R_23776687_SNP [dm6]	A	G	2.291e^-5	0.658	INTRON CG9850
2R	10026121	2R_10026121_SNP [dm3] 2R_14138616_SNP [dm6]	C	G	2.294e^-5	0.658	INTRON Prosap	TF binding site mE1_TFBS_cad
3L	9328509	3L_9328509_SNP [dm3] 3L_9335409_SNP [dm6]	A	G	2.296e^-5	0.658	UPSTREAM PGRP-LA INTRON PGRP-LA
2R	8964451	2R_8964451_SNP [dm3] 2R_13076946_SNP [dm6]	G	T	2.345e^-5	0.658	INTRON Drl-2
3R	24702186	3R_24702186_SNP [dm3] 3R_28876464_SNP [dm6]	A	G	2.361e^-5	0.658	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2936188	2L_2936188_SNP [dm3] 2L_2936188_SNP [dm6]	C	T	2.512e^-5	0.658	INTRON lilli
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	2.514e^-5	0.658	INTRON Cad87A
2L	11472637	2L_11472637_SNP [dm3] 2L_11472637_SNP [dm6]	C	G	2.524e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11442523	2L_11442523_SNP [dm3] 2L_11442523_SNP [dm6]	C	T	2.552e^-5	0.658	INTRON salm
2R	16051913	2R_16051913_SNP [dm3] 2R_20164408_SNP [dm6]	G	A	2.567e^-5	0.658	INTERGENIC
2L	10153952	2L_10153952_SNP [dm3] 2L_10153952_SNP [dm6]	G	A	2.615e^-5	0.658	SYNONYMOUS_CODING CG4839 INTRON CG44153
2L	11442524	2L_11442524_SNP [dm3] 2L_11442524_SNP [dm6]	G	T	2.650e^-5	0.658	INTRON salm
2R	12866198	2R_12866198_SNP [dm3] 2R_16978693_SNP [dm6]	T	C	2.665e^-5	0.658	INTRON Cbp53E
3L	7452459	3L_7452459_SNP [dm3] 3L_7459359_SNP [dm6]	C	T	2.707e^-5	0.658	DOWNSTREAM ppk26 INTERGENIC
3R	3853227	3R_3853227_SNP [dm3] 3R_8027505_SNP [dm6]	G	A	2.747e^-5	0.658	UPSTREAM CG2747 DOWNSTREAM ImpE3 INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	20272734	2R_20272734_SNP [dm3] 2R_24385211_SNP [dm6]	A	C	2.781e^-5	0.658	INTRON mAChR-A	TF binding site mE1_TFBS_cad
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	2.793e^-5	0.658	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
3L	12185047	3L_12185047_SNP [dm3] 3L_12191947_SNP [dm6]	G	A	2.872e^-5	0.658	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
3R	10793720	3R_10793720_SNP [dm3] 3R_14967998_SNP [dm6]	C	T	2.911e^-5	0.658	INTERGENIC
3R	19623204	3R_19623204_SNP [dm3] 3R_23797482_SNP [dm6]	C	T	2.959e^-5	0.658	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad
X	6439783	X_6439783_SNP [dm3] X_6545750_SNP [dm6]	G	T	2.961e^-5	0.658	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1477876	2L_1477876_SNP [dm3] 2L_1477876_SNP [dm6]	C	G	2.971e^-5	0.658	INTERGENIC
X	17845068	X_17845068_SNP [dm3] X_17951035_SNP [dm6]	A	G	2.979e^-5	0.658	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8964455	2R_8964455_SNP [dm3] 2R_13076950_SNP [dm6]	T	G	2.991e^-5	0.658	INTRON Drl-2
2L	8224915	2L_8224915_SNP [dm3] 2L_8224915_SNP [dm6]	G	A	3.002e^-5	0.658	SYNONYMOUS_CODING Pvr
3R	25832010	3R_25832010_SNP [dm3] 3R_30006288_SNP [dm6]	G	C	3.038e^-5	0.658	INTRON Nlp & 1 other	TF binding site mE1_TFBS_sens
3L	20875545	3L_20875545_SNP [dm3] 3L_20882445_SNP [dm6]	T	A	3.126e^-5	0.658	INTRON CG32432
2R	7053816	2R_7053816_SNP [dm3] 2R_11166311_SNP [dm6]	T	A	3.161e^-5	0.658	INTRON shn & 1 other
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	3.177e^-5	0.658	INTRON CG14877
2L	11443197	2L_11443197_SNP [dm3] 2L_11443197_SNP [dm6]	G	A	3.192e^-5	0.658	INTRON salm
X	6439781	X_6439781_SNP [dm3] X_6545748_SNP [dm6]	G	C	3.251e^-5	0.658	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8145393	2R_8145393_SNP [dm3] 2R_12257888_SNP [dm6]	A	T	3.256e^-5	0.658	INTRON Vha36-2	TF binding site mE1_TFBS_cad
X	8736742	X_8736742_SNP [dm3] X_8842709_SNP [dm6]	A	T	3.270e^-5	0.658	INTRON CG12075
2L	15093320	2L_15093320_DEL [dm3] 2L_15093320_DEL [dm6]	TTGATTAT	T	3.303e^-5	0.658	INTRON CG15270
2R	8089970	2R_8089970_SNP [dm3] 2R_12202465_SNP [dm6]	A	G	3.331e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7924689	3R_7924689_SNP [dm3] 3R_12098967_SNP [dm6]	A	C	3.527e^-5	0.689	INTRON dpr17	TF binding site mE1_TFBS_HSA
2L	11442495	2L_11442495_SNP [dm3] 2L_11442495_SNP [dm6]	T	C	3.561e^-5	0.689	INTRON salm
2R	18245408	2R_18245408_SNP [dm3] 2R_22357903_SNP [dm6]	A	G	3.646e^-5	0.698	INTRON Liprin-gamma	transposable element FlyBase
3R	14031060	3R_14031060_SNP [dm3] 3R_18205338_SNP [dm6]	C	T	3.747e^-5	0.703	INTRON CG7985
2L	8501477	2L_8501477_SNP [dm3] 2L_8501477_SNP [dm6]	G	C	3.776e^-5	0.703	INTRON Dh31
2L	1114241	2L_1114241_SNP [dm3] 2L_1114241_SNP [dm6]	G	A	3.828e^-5	0.703	DOWNSTREAM Pino & 1 other INTERGENIC
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	3.888e^-5	0.703	INTERGENIC
2L	5717457	2L_5717457_SNP [dm3] 2L_5717457_SNP [dm6]	T	C	4.018e^-5	0.703	UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
2L	11459477	2L_11459477_SNP [dm3] 2L_11459477_SNP [dm6]	C	T	4.116e^-5	0.703	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	5620965	3L_5620965_SNP [dm3] 3L_5627865_SNP [dm6]	C	G	4.128e^-5	0.703	INTERGENIC
2L	11442767	2L_11442767_SNP [dm3] 2L_11442767_SNP [dm6]	T	C	4.138e^-5	0.703	INTRON salm
3L	2659303	3L_2659303_SNP [dm3] 3L_2659303_SNP [dm6]	T	A	4.161e^-5	0.703	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1480246	2L_1480246_SNP [dm3] 2L_1480246_SNP [dm6]	G	A	4.183e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	21257788	3R_21257788_SNP [dm3] 3R_25432066_SNP [dm6]	A	G	4.214e^-5	0.703	INTRON Fur1
3L	1604286	3L_1604286_SNP [dm3] 3L_1604286_SNP [dm6]	A	T	4.230e^-5	0.703	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
2R	20274488	2R_20274488_SNP [dm3] 2R_24386965_SNP [dm6]	A	G	4.314e^-5	0.703	INTRON mAChR-A
2R	8964449	2R_8964449_INS [dm3] 2R_13076944_INS [dm6]	A	ACAATTTTAGCAA...	4.337e^-5	0.703	INTRON Drl-2
2L	5717492	2L_5717492_SNP [dm3] 2L_5717492_SNP [dm6]	G	A	4.363e^-5	0.703	NON_SYNONYMOUS_CODING CG34011 UPSTREAM CG14007 DOWNSTREAM CG11149
2R	8092915	2R_8092915_SNP [dm3] 2R_12205410_SNP [dm6]	C	G	4.435e^-5	0.703	UPSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11442836	2L_11442836_SNP [dm3] 2L_11442836_SNP [dm6]	G	A	4.501e^-5	0.703	INTRON salm
2R	20274604	2R_20274604_SNP [dm3] 2R_24387081_SNP [dm6]	T	G	4.518e^-5	0.703	INTRON mAChR-A
2L	12555208	2L_12555208_SNP [dm3] 2L_12555208_SNP [dm6]	G	A	4.533e^-5	0.703	INTERGENIC
3R	7924629	3R_7924629_SNP [dm3] 3R_12098907_SNP [dm6]	G	C	4.541e^-5	0.703	INTRON dpr17
3R	18982520	3R_18982520_SNP [dm3] 3R_23156798_SNP [dm6]	A	G	4.542e^-5	0.703	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	8658856	2R_8658856_SNP [dm3] 2R_12771351_SNP [dm6]	T	C	4.546e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	8605800	3L_8605800_SNP [dm3] 3L_8612700_SNP [dm6]	C	A	4.569e^-5	0.703	INTRON CG6282
2R	8092581	2R_8092581_SNP [dm3] 2R_12205076_SNP [dm6]	C	T	4.576e^-5	0.703	INTERGENIC
3L	19310048	3L_19310048_SNP [dm3] 3L_19316948_SNP [dm6]	C	T	4.609e^-5	0.703	INTRON pip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18779450	3L_18779450_INS [dm3] 3L_18786350_INS [dm6]	A	AG	4.746e^-5	0.711	INTRON ftz-f1
3L	18273671	3L_18273671_SNP [dm3] 3L_18280571_SNP [dm6]	G	A	4.773e^-5	0.711	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11458720	2L_11458720_SNP [dm3] 2L_11458720_SNP [dm6]	G	C	4.778e^-5	0.711	INTERGENIC
3R	7734348	3R_7734348_SNP [dm3] 3R_11908626_SNP [dm6]	T	C	4.925e^-5	0.714	INTRON Cad87A
2L	11468264	2L_11468264_SNP [dm3] 2L_11468264_SNP [dm6]	A	G	4.933e^-5	0.714	INTERGENIC
X	5922253	X_5922253_SNP [dm3] X_6028220_SNP [dm6]	T	C	4.947e^-5	0.714	INTERGENIC
2L	11436539	2L_11436539_SNP [dm3] 2L_11436539_SNP [dm6]	G	A	4.979e^-5	0.714	SYNONYMOUS_CODING salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21940387	2L_21940387_SNP [dm3] 2L_21940387_SNP [dm6]	A	G	5.041e^-5	0.714	INTERGENIC	transposable element FlyBase
2L	11089603	2L_11089603_SNP [dm3] 2L_11089603_SNP [dm6]	T	C	5.118e^-5	0.714	SYNONYMOUS_CODING CG16854	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6616874	3R_6616874_SNP [dm3] 3R_10791152_SNP [dm6]	A	T	5.140e^-5	0.714	DOWNSTREAM Mcm5 INTERGENIC	regulatory region REDfly_CRMs
2R	8964452	2R_8964452_SNP [dm3] 2R_13076947_SNP [dm6]	T	C	5.261e^-5	0.714	INTRON Drl-2
3R	14298861	3R_14298861_SNP [dm3] 3R_18473139_SNP [dm6]	A	C	5.287e^-5	0.714	INTRON fru
3R	7763760	3R_7763760_SNP [dm3] 3R_11938038_SNP [dm6]	T	C	5.296e^-5	0.714	INTRON Cad87A
3R	24710050	3R_24710050_SNP [dm3] 3R_28884328_SNP [dm6]	G	A	5.335e^-5	0.714	SYNONYMOUS_CODING CG14526 INTRON CG33203
2L	21759276	2L_21759276_SNP [dm3] 2L_21759276_SNP [dm6]	C	T	5.341e^-5	0.714	SYNONYMOUS_CODING CG1416
3L	5561727	3L_5561727_SNP [dm3] 3L_5568627_SNP [dm6]	C	T	5.433e^-5	0.714	SYNONYMOUS_CODING Msr-110 UPSTREAM snmRNA:357	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2594366	3R_2594366_SNP [dm3] 3R_6768644_SNP [dm6]	G	A	5.448e^-5	0.714	INTRON CR42721	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	11441288	2L_11441288_SNP [dm3] 2L_11441288_SNP [dm6]	C	T	5.448e^-5	0.714	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	7924728	3R_7924728_SNP [dm3] 3R_12099006_SNP [dm6]	G	T	5.454e^-5	0.714	INTRON dpr17	TF binding site mE1_TFBS_HSA
3R	23421655	3R_23421655_SNP [dm3] 3R_27595933_SNP [dm6]	G	T	5.475e^-5	0.714	UTR_5_PRIME CG5639	TF binding site mE1_TFBS_inv
3R	18372112	3R_18372112_SNP [dm3] 3R_22546390_SNP [dm6]	A	G	5.560e^-5	0.714	UPSTREAM AdipoR INTRON AdipoR	TF binding site BDTNP1_TFBS_twi
3L	1825298	3L_1825298_SNP [dm3] 3L_1825298_SNP [dm6]	T	C	5.562e^-5	0.714	INTRON Cpr62Ba
3L	10710957	3L_10710957_SNP [dm3] 3L_10717857_SNP [dm6]	A	T	5.583e^-5	0.714	INTERGENIC
3R	16899088	3R_16899088_SNP [dm3] 3R_21073366_SNP [dm6]	C	T	5.598e^-5	0.714	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	26182554	3R_26182554_SNP [dm3] 3R_30356832_SNP [dm6]	C	T	5.731e^-5	0.726	INTRON hdc
2L	7298130	2L_7298130_SNP [dm3] 2L_7298130_SNP [dm6]	G	T	5.829e^-5	0.726	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	14677168	2L_14677168_SNP [dm3] 2L_14677168_SNP [dm6]	G	A	5.836e^-5	0.726	INTRON osp
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	5.906e^-5	0.726	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12805456	2R_12805456_SNP [dm3] 2R_16917951_SNP [dm6]	A	T	5.915e^-5	0.726	INTERGENIC
3L	15742296	3L_15742296_SNP [dm3] 3L_15749196_SNP [dm6]	A	G	5.924e^-5	0.726	DOWNSTREAM CR45240 INTERGENIC
2R	5049532	2R_5049532_DEL [dm3] 2R_9162027_DEL [dm6]	CGCTATAATTATAATGGTAT...	C	6.134e^-5	0.727	UTR_3_PRIME CG8046 UPSTREAM CG8008 DOWNSTREAM CG8046 & 1 other INTRAGENIC CG8046 INTERGENIC
X	5922882	X_5922882_SNP [dm3] X_6028849_SNP [dm6]	T	G	6.186e^-5	0.727	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6616871	3R_6616871_SNP [dm3] 3R_10791149_SNP [dm6]	C	G	6.191e^-5	0.727	UTR_3_PRIME Mcm5	regulatory region REDfly_CRMs
3L	18211423	3L_18211423_SNP [dm3] 3L_18218323_SNP [dm6]	A	C	6.252e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3177748	3L_3177748_SNP [dm3] 3L_3177748_SNP [dm6]	A	G	6.280e^-5	0.727	INTRON CG14964
2R	13861075	2R_13861075_SNP [dm3] 2R_17973570_SNP [dm6]	A	T	6.367e^-5	0.727	INTERGENIC
2L	1477870	2L_1477870_SNP [dm3] 2L_1477870_SNP [dm6]	A	G	6.506e^-5	0.727	INTERGENIC
X	10210507	X_10210507_SNP [dm3] X_10316474_SNP [dm6]	T	G	6.545e^-5	0.727	INTRON alpha-Man-I
2L	3891023	2L_3891023_SNP [dm3] 2L_3891023_SNP [dm6]	T	C	6.623e^-5	0.727	UPSTREAM capu INTRON capu
2L	1477782	2L_1477782_DEL [dm3] 2L_1477782_DEL [dm6]	ACTTGTATTTTAATGCAAA...	A	6.717e^-5	0.727	INTERGENIC
X	8862781	X_8862781_SNP [dm3] X_8968748_SNP [dm6]	C	A	6.786e^-5	0.727	INTRON rdgA
2L	22030410	2L_22030410_SNP [dm3] 2L_22030410_SNP [dm6]	G	A	6.806e^-5	0.727	INTERGENIC
X	10211674	X_10211674_SNP [dm3] X_10317641_SNP [dm6]	T	C	6.854e^-5	0.727	INTRON alpha-Man-I
2L	12515452	2L_12515452_SNP [dm3] 2L_12515452_SNP [dm6]	A	C	6.883e^-5	0.727	INTRON bun
2L	12555196	2L_12555196_SNP [dm3] 2L_12555196_SNP [dm6]	A	G	6.884e^-5	0.727	INTERGENIC
3R	14654467	3R_14654467_SNP [dm3] 3R_18828745_SNP [dm6]	C	T	6.946e^-5	0.727	INTRON CG18208
X	10505464	X_10505464_SNP [dm3] X_10611431_SNP [dm6]	A	T	6.993e^-5	0.727	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12464869	3L_12464869_SNP [dm3] 3L_12471769_SNP [dm6]	A	T	7.037e^-5	0.727	UTR_5_PRIME CG10616	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	18759093	2L_18759093_SNP [dm3] 2L_18759093_SNP [dm6]	A	C	7.076e^-5	0.727	INTERGENIC
3R	22312924	3R_22312924_SNP [dm3] 3R_26487202_SNP [dm6]	T	C	7.121e^-5	0.727	INTRON plum	TF binding site mE1_TFBS_inv
2R	18199780	2R_18199780_SNP [dm3] 2R_22312275_SNP [dm6]	A	C	7.263e^-5	0.727	UPSTREAM wdp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15089500	2L_15089500_SNP [dm3] 2L_15089500_SNP [dm6]	C	T	7.320e^-5	0.727	INTRON CG15270
3L	14573513	3L_14573513_SNP [dm3] 3L_14580413_SNP [dm6]	G	T	7.347e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16126872	3L_16126872_SNP [dm3] 3L_16133772_SNP [dm6]	C	T	7.352e^-5	0.727	NON_SYNONYMOUS_CODING CG16838	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11822692	3L_11822692_SNP [dm3] 3L_11829592_SNP [dm6]	C	T	7.397e^-5	0.727	INTRON CycA & 1 other
3R	3853101	3R_3853101_SNP [dm3] 3R_8027379_SNP [dm6]	T	C	7.418e^-5	0.727	UPSTREAM CG2747 INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14298796	3R_14298796_SNP [dm3] 3R_18473074_SNP [dm6]	T	G	7.421e^-5	0.727	INTRON fru
2R	19669970	2R_19669970_SNP [dm3] 2R_23782447_SNP [dm6]	T	C	7.431e^-5	0.727	INTRON CG9850	TF binding site mE1_TFBS_chinmo
2R	15790996	2R_15790996_SNP [dm3] 2R_19903491_SNP [dm6]	T	A	7.454e^-5	0.727	INTERGENIC
2R	8658733	2R_8658733_SNP [dm3] 2R_12771228_SNP [dm6]	C	G	7.471e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11442585	2L_11442585_SNP [dm3] 2L_11442585_SNP [dm6]	A	G	7.527e^-5	0.727	INTRON salm
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	7.535e^-5	0.727	INTRON 4EHP
3R	9961266	3R_9961266_SNP [dm3] 3R_14135544_SNP [dm6]	T	C	7.544e^-5	0.727	INTERGENIC
2L	11441890	2L_11441890_DEL [dm3] 2L_11441890_DEL [dm6]	TGGATTT	T	7.553e^-5	0.727	INTRON salm	TF binding site mE1_TFBS_inv
X	17311692	X_17311692_SNP [dm3] X_17417659_SNP [dm6]	C	T	7.575e^-5	0.727	INTRON CG8611	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22703801	3R_22703801_SNP [dm3] 3R_26878079_SNP [dm6]	A	G	7.634e^-5	0.727	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_HSA
3L	9328580	3L_9328580_SNP [dm3] 3L_9335480_SNP [dm6]	T	C	7.640e^-5	0.727	UPSTREAM PGRP-LA INTRON PGRP-LA
3L	12185514	3L_12185514_SNP [dm3] 3L_12192414_SNP [dm6]	G	T	7.661e^-5	0.727	NON_SYNONYMOUS_CODING Est-P UTR_3_PRIME thoc6 DOWNSTREAM thoc6
3L	19217897	3L_19217897_SNP [dm3] 3L_19224797_SNP [dm6]	G	A	7.720e^-5	0.727	INTRON fz2
2R	19666257	2R_19666257_SNP [dm3] 2R_23778734_SNP [dm6]	C	T	7.748e^-5	0.727	INTRON CG9850
3L	14206340	3L_14206340_SNP [dm3] 3L_14213240_SNP [dm6]	T	A	7.790e^-5	0.727	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	10710967	3L_10710967_SNP [dm3] 3L_10717867_SNP [dm6]	G	A	7.810e^-5	0.727	INTERGENIC
3R	24710041	3R_24710041_SNP [dm3] 3R_28884319_SNP [dm6]	C	T	7.812e^-5	0.727	SYNONYMOUS_CODING CG14526 INTRON CG33203
3L	5624828	3L_5624828_SNP [dm3] 3L_5631728_SNP [dm6]	T	C	7.930e^-5	0.727	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	7755347	3R_7755347_SNP [dm3] 3R_11929625_SNP [dm6]	A	G	7.960e^-5	0.727	INTRON Cad87A
X	15209738	X_15209738_SNP [dm3] X_15315705_SNP [dm6]	T	G	7.976e^-5	0.727	INTRON gce EXON CR44961
2R	1318497	2R_1318497_SNP [dm3] 2R_5430992_SNP [dm6]	T	A	7.998e^-5	0.727	INTRON laccase2	transposable element FlyBase
3L	1285619	3L_1285619_SNP [dm3] 3L_1285619_SNP [dm6]	A	T	8.003e^-5	0.727	INTRON CG32333
3L	12185525	3L_12185525_SNP [dm3] 3L_12192425_SNP [dm6]	C	T	8.049e^-5	0.727	SPLICE_SITE_ACCEPTOR thoc6 SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6 INTRON thoc6
X	15214283	X_15214283_SNP [dm3] X_15320250_SNP [dm6]	C	G	8.078e^-5	0.727	UPSTREAM Top1 & 1 other INTRON Top1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19323454	3R_19323454_SNP [dm3] 3R_23497732_SNP [dm6]	T	C	8.124e^-5	0.727	INTERGENIC	TF binding site mE1_TFBS_inv
X	15214615	X_15214615_SNP [dm3] X_15320582_SNP [dm6]	T	G	8.141e^-5	0.727	UTR_5_PRIME Top1 UPSTREAM mir-4957 INTRON Top1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA
2L	11468265	2L_11468265_SNP [dm3] 2L_11468265_SNP [dm6]	C	G	8.149e^-5	0.727	INTERGENIC
3R	23560765	3R_23560765_SNP [dm3] 3R_27735043_SNP [dm6]	G	C	8.158e^-5	0.727	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1477748	2L_1477748_SNP [dm3] 2L_1477748_SNP [dm6]	A	C	8.222e^-5	0.727	INTERGENIC
2L	15093816	2L_15093816_SNP [dm3] 2L_15093816_SNP [dm6]	T	A	8.226e^-5	0.727	INTRON CG15270
2L	15854133	2L_15854133_SNP [dm3] 2L_15854133_SNP [dm6]	A	G	8.286e^-5	0.727	START_GAINED Tektin-A UTR_5_PRIME Tektin-A UPSTREAM Tektin-A DOWNSTREAM CG13243
2L	12951597	2L_12951597_SNP [dm3] 2L_12951597_SNP [dm6]	C	A	8.312e^-5	0.727	INTERGENIC
2L	11442658	2L_11442658_SNP [dm3] 2L_11442658_SNP [dm6]	C	A	8.335e^-5	0.727	INTRON salm
3R	21406015	3R_21406015_SNP [dm3] 3R_25580293_SNP [dm6]	A	C	8.524e^-5	0.727	DOWNSTREAM CG4582 INTRON msi
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	8.530e^-5	0.727	INTRON Cad87A
2R	7048939	2R_7048939_SNP [dm3] 2R_11161434_SNP [dm6]	A	C	8.543e^-5	0.727	INTRON shn & 1 other	TF binding site mE1_TFBS_inv
3L	14598725	3L_14598725_DEL [dm3] 3L_14605625_DEL [dm6]	GGGCTCTG	G	8.571e^-5	0.727	INTERGENIC
3R	18982358	3R_18982358_SNP [dm3] 3R_23156636_SNP [dm6]	T	A	8.695e^-5	0.727	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11442926	2L_11442926_SNP [dm3] 2L_11442926_SNP [dm6]	C	G	8.714e^-5	0.727	INTRON salm
2R	10106096	2R_10106096_SNP [dm3] 2R_14218591_SNP [dm6]	C	A	8.756e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	7766736	3R_7766736_SNP [dm3] 3R_11941014_SNP [dm6]	A	C	8.789e^-5	0.727	INTRON Cad87A
2L	10923897	2L_10923897_SNP [dm3] 2L_10923897_SNP [dm6]	G	A	8.830e^-5	0.727	INTRON dpr2
2L	11471895	2L_11471895_SNP [dm3] 2L_11471895_SNP [dm6]	G	A	8.878e^-5	0.727	INTERGENIC	TF binding site mE1_TFBS_cad
X	6879456	X_6879456_SNP [dm3] X_6985423_SNP [dm6]	A	C	8.896e^-5	0.727	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	11441568	2L_11441568_SNP [dm3] 2L_11441568_SNP [dm6]	G	A	8.956e^-5	0.727	INTRON salm	TF binding site mE1_TFBS_inv
3R	7763372	3R_7763372_DEL [dm3] 3R_11937650_DEL [dm6]	AA	A	9.003e^-5	0.727	INTRON Cad87A
2R	8292108	2R_8292108_SNP [dm3] 2R_12404603_SNP [dm6]	C	T	9.077e^-5	0.727	UTR_3_PRIME Cpr49Ae	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3852810	3R_3852810_SNP [dm3] 3R_8027088_SNP [dm6]	C	G	9.142e^-5	0.727	UTR_5_PRIME CG2747 INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8700154	2L_8700154_SNP [dm3] 2L_8700154_SNP [dm6]	C	G	9.205e^-5	0.727	UPSTREAM Hnf4 INTRON Hnf4
2L	4426170	2L_4426170_INS [dm3] 2L_4426170_INS [dm6]	C	ACGGATG	9.247e^-5	0.727	INTRON CG15431
3R	10132151	3R_10132151_SNP [dm3] 3R_14306429_SNP [dm6]	T	A	9.269e^-5	0.727	SYNONYMOUS_CODING su_Hw_
X	10210786	X_10210786_SNP [dm3] X_10316753_SNP [dm6]	A	T	9.368e^-5	0.727	INTRON alpha-Man-I
X	6879893	X_6879893_SNP [dm3] X_6985860_SNP [dm6]	T	A	9.392e^-5	0.727	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	2575628	2L_2575628_SNP [dm3] 2L_2575628_SNP [dm6]	G	A	9.422e^-5	0.727	SYNONYMOUS_CODING insv UPSTREAM Rad1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	21257905	3R_21257905_SNP [dm3] 3R_25432183_SNP [dm6]	T	A	9.434e^-5	0.727	INTRON Fur1
2L	3890875	2L_3890875_SNP [dm3] 2L_3890875_SNP [dm6]	G	A	9.438e^-5	0.727	UPSTREAM capu INTRON capu
3L	19217913	3L_19217913_SNP [dm3] 3L_19224813_SNP [dm6]	A	G	9.482e^-5	0.727	INTRON fz2
3R	19990741	3R_19990741_SNP [dm3] 3R_24165019_SNP [dm6]	C	A	9.559e^-5	0.727	SYNONYMOUS_CODING Apc2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3890873	2L_3890873_SNP [dm3] 2L_3890873_SNP [dm6]	T	C	9.639e^-5	0.727	UPSTREAM capu INTRON capu
2R	11267065	2R_11267065_SNP [dm3] 2R_15379560_SNP [dm6]	A	G	9.789e^-5	0.727	NON_SYNONYMOUS_CODING dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9602070	3R_9602070_SNP [dm3] 3R_13776348_SNP [dm6]	C	T	9.803e^-5	0.727	SYNONYMOUS_CODING CG9297
2L	7696878	2L_7696878_SNP [dm3] 2L_7696878_SNP [dm6]	T	A	9.810e^-5	0.727	INTRON Tep2
2R	13023226	2R_13023226_SNP [dm3] 2R_17135721_SNP [dm6]	A	G	9.815e^-5	0.727	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
3R	26390325	3R_26390325_SNP [dm3] 3R_30564603_SNP [dm6]	G	C	9.829e^-5	0.727	INTRON tmod
2R	18261053	2R_18261053_SNP [dm3] 2R_22373548_SNP [dm6]	C	A	9.875e^-5	0.727	UPSTREAM Liprin-gamma DOWNSTREAM CR44759 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	2453604	2R_2453604_SNP [dm3] 2R_6566099_SNP [dm6]	G	T	9.898e^-5	0.727	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12184966	3L_12184966_SNP [dm3] 3L_12191866_SNP [dm6]	G	T	9.950e^-5	0.727	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
X	10210715	X_10210715_SNP [dm3] X_10316682_SNP [dm6]	G	A	9.994e^-5	0.727	INTRON alpha-Man-I
3R	16696254	3R_16696254_SNP [dm3] 3R_20870532_SNP [dm6]	G	A	1.001e^-4	0.727	UPSTREAM TotA INTERGENIC
2L	14677175	2L_14677175_SNP [dm3] 2L_14677175_SNP [dm6]	C	T	1.005e^-4	0.727	INTRON osp
2L	10825197	2L_10825197_SNP [dm3] 2L_10825197_SNP [dm6]	T	A	1.007e^-4	0.727	INTRON Nos
3R	21583693	3R_21583693_SNP [dm3] 3R_25757971_SNP [dm6]	A	C	1.008e^-4	0.727	INTRON LpR1
2L	11467783	2L_11467783_SNP [dm3] 2L_11467783_SNP [dm6]	C	A	1.009e^-4	0.727	INTERGENIC
3R	18022895	3R_18022895_SNP [dm3] 3R_22197173_SNP [dm6]	G	A	1.011e^-4	0.727	INTRON SKIP & 1 other
2R	8092696	2R_8092696_SNP [dm3] 2R_12205191_SNP [dm6]	C	A	1.012e^-4	0.727	UPSTREAM CR45276 INTERGENIC
2L	2096576	2L_2096576_SNP [dm3] 2L_2096576_SNP [dm6]	G	T	1.016e^-4	0.727	INTRON dpr3
2R	5030388	2R_5030388_SNP [dm3] 2R_9142883_SNP [dm6]	C	T	1.022e^-4	0.727	SYNONYMOUS_CODING shrb DOWNSTREAM CG8788 & 1 other	TF binding site mE1_TFBS_sens
2R	10026374	2R_10026374_SNP [dm3] 2R_14138869_SNP [dm6]	G	A	1.026e^-4	0.727	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14451797	3R_14451797_SNP [dm3] 3R_18626075_SNP [dm6]	T	A	1.034e^-4	0.727	INTRON qin
2R	10026377	2R_10026377_SNP [dm3] 2R_14138872_SNP [dm6]	G	A	1.034e^-4	0.727	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	1.038e^-4	0.727	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3L	9297660	3L_9297660_SNP [dm3] 3L_9304560_SNP [dm6]	C	T	1.043e^-4	0.727	INTERGENIC
3R	16351462	3R_16351462_SNP [dm3] 3R_20525740_SNP [dm6]	A	G	1.045e^-4	0.727	INTERGENIC
2R	8175801	2R_8175801_DEL [dm3] 2R_12288296_DEL [dm6]	CGTTCT	C	1.055e^-4	0.727	INTRON CG42700
2L	3505819	2L_3505819_SNP [dm3] 2L_3505819_SNP [dm6]	A	C	1.055e^-4	0.727	INTRON tim
X	2871205	X_2871205_SNP [dm3] X_2977172_SNP [dm6]	C	T	1.058e^-4	0.727	INTRON kirre
3R	16899071	3R_16899071_SNP [dm3] 3R_21073349_SNP [dm6]	G	T	1.059e^-4	0.727	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	5282371	2L_5282371_SNP [dm3] 2L_5282371_SNP [dm6]	T	C	1.064e^-4	0.727	SYNONYMOUS_CODING Bub1	TF binding site mE1_TFBS_cad
3L	10867767	3L_10867767_SNP [dm3] 3L_10874667_SNP [dm6]	A	T	1.065e^-4	0.727	UTR_3_PRIME tna DOWNSTREAM tna	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3800669	3L_3800669_SNP [dm3] 3L_3800669_SNP [dm6]	G	T	1.066e^-4	0.727	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	5923913	3R_5923913_SNP [dm3] 3R_10098191_SNP [dm6]	C	T	1.072e^-4	0.727	EXON CR43459
3L	20875981	3L_20875981_SNP [dm3] 3L_20882881_SNP [dm6]	C	T	1.076e^-4	0.727	INTRON CG32432
3R	26084058	3R_26084058_SNP [dm3] 3R_30258336_SNP [dm6]	C	T	1.082e^-4	0.727	INTERGENIC
2R	8092654	2R_8092654_SNP [dm3] 2R_12205149_SNP [dm6]	A	T	1.085e^-4	0.727	UPSTREAM CR45276 INTERGENIC
3R	3853403	3R_3853403_DEL [dm3] 3R_8027681_DEL [dm6]	CG	C	1.085e^-4	0.727	UPSTREAM CG2747 DOWNSTREAM ImpE3 INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9037743	2L_9037743_SNP [dm3] 2L_9037743_SNP [dm6]	A	G	1.087e^-4	0.727	INTERGENIC
3L	11821976	3L_11821976_SNP [dm3] 3L_11828876_SNP [dm6]	G	T	1.089e^-4	0.727	UPSTREAM CG7264 INTRON CycA
2L	11471860	2L_11471860_SNP [dm3] 2L_11471860_SNP [dm6]	C	T	1.091e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1288298	3L_1288298_SNP [dm3] 3L_1288298_SNP [dm6]	T	G	1.101e^-4	0.727	UTR_3_PRIME CG32333 INTRON CG32333
X	14501983	X_14501983_SNP [dm3] X_14607950_SNP [dm6]	A	G	1.104e^-4	0.727	INTRON NetA	TF binding site BDTNP1_TFBS_twi
X	2237930	X_2237930_SNP [dm3] X_2343897_SNP [dm6]	G	C	1.105e^-4	0.727	DOWNSTREAM mRpL14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8504615	2L_8504615_SNP [dm3] 2L_8504615_SNP [dm6]	C	T	1.113e^-4	0.727	INTRON Dh31
X	8736746	X_8736746_SNP [dm3] X_8842713_SNP [dm6]	G	C	1.116e^-4	0.727	INTRON CG12075
2R	8114468	2R_8114468_SNP [dm3] 2R_12226963_SNP [dm6]	C	T	1.119e^-4	0.727	UPSTREAM CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
2R	1076496	2R_1076496_SNP [dm3] 2R_5188991_SNP [dm6]	G	T	1.122e^-4	0.727	INTRON Nipped-A
3R	14506498	3R_14506498_SNP [dm3] 3R_18680776_SNP [dm6]	A	G	1.128e^-4	0.727	UTR_5_PRIME CG7708 DOWNSTREAM CG7706
X	4341707	X_4341707_SNP [dm3] X_4447674_SNP [dm6]	T	C	1.140e^-4	0.727	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	14964643	2R_14964643_SNP [dm3] 2R_19077138_SNP [dm6]	A	G	1.140e^-4	0.727	INTRON 5-HT1A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5787789	X_5787789_SNP [dm3] X_5893756_SNP [dm6]	C	T	1.140e^-4	0.727	INTRON CR45668	TF binding site mE1_TFBS_zfh1
2L	3329306	2L_3329306_SNP [dm3] 2L_3329306_SNP [dm6]	G	A	1.140e^-4	0.727	SYNONYMOUS_CODING CG33282
3L	3800672	3L_3800672_SNP [dm3] 3L_3800672_SNP [dm6]	G	C	1.151e^-4	0.727	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	5976584	2R_5976584_DEL [dm3] 2R_10089079_DEL [dm6]	CACA	C	1.151e^-4	0.727	INTRON CG2269
3R	19323752	3R_19323752_SNP [dm3] 3R_23498030_SNP [dm6]	T	A	1.161e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9582427	3L_9582427_SNP [dm3] 3L_9589327_SNP [dm6]	T	G	1.162e^-4	0.727	INTRON CG42673
3R	11299278	3R_11299278_SNP [dm3] 3R_15473556_SNP [dm6]	C	T	1.164e^-4	0.727	INTRON AdamTS-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	6945674	3R_6945674_SNP [dm3] 3R_11119952_SNP [dm6]	T	A	1.173e^-4	0.727	INTERGENIC
3L	12185769	3L_12185769_SNP [dm3] 3L_12192669_SNP [dm6]	A	T	1.176e^-4	0.727	NON_SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P
2L	18754607	2L_18754607_SNP [dm3] 2L_18754607_SNP [dm6]	C	T	1.176e^-4	0.727	INTERGENIC
2L	15379351	2L_15379351_SNP [dm3] 2L_15379351_SNP [dm6]	G	A	1.183e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3834799	3R_3834799_SNP [dm3] 3R_8009077_SNP [dm6]	T	G	1.186e^-4	0.727	UTR_5_PRIME CG11052 UPSTREAM CG2767 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	7797822	3R_7797822_SNP [dm3] 3R_11972100_SNP [dm6]	C	T	1.189e^-4	0.727	SPLICE_SITE_REGION GC2 SYNONYMOUS_CODING GC2 UTR_5_PRIME GC2 DOWNSTREAM GC1 & 1 other
2R	5059503	2R_5059503_SNP [dm3] 2R_9171998_SNP [dm6]	A	C	1.189e^-4	0.727	SYNONYMOUS_CODING Rme-8
2R	10182300	2R_10182300_SNP [dm3] 2R_14294795_SNP [dm6]	T	G	1.189e^-4	0.727	UTR_3_PRIME Ih INTRON Ih
3L	19309846	3L_19309846_SNP [dm3] 3L_19316746_SNP [dm6]	C	T	1.191e^-4	0.727	INTRON pip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24842502	3R_24842502_SNP [dm3] 3R_29016780_SNP [dm6]	C	T	1.200e^-4	0.727	INTRON wat
2L	8503971	2L_8503971_DEL [dm3] 2L_8503971_DEL [dm6]	AATTCATGCAGGGTTCGTT...	A	1.206e^-4	0.727	INTRON Dh31
2L	11447058	2L_11447058_SNP [dm3] 2L_11447058_SNP [dm6]	C	A	1.218e^-4	0.727	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21065468	3R_21065468_SNP [dm3] 3R_25239746_SNP [dm6]	G	A	1.225e^-4	0.727	UPSTREAM to DOWNSTREAM CG11852 INTERGENIC
3R	26387922	3R_26387922_SNP [dm3] 3R_30562200_SNP [dm6]	C	T	1.227e^-4	0.727	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	13991546	3R_13991546_SNP [dm3] 3R_18165824_SNP [dm6]	G	A	1.232e^-4	0.727	SYNONYMOUS_CODING Prx5 UTR_3_PRIME CG7215 DOWNSTREAM Cbp20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1477770	2L_1477770_SNP [dm3] 2L_1477770_SNP [dm6]	C	G	1.236e^-4	0.727	INTERGENIC
2R	9592063	2R_9592063_SNP [dm3] 2R_13704558_SNP [dm6]	G	A	1.248e^-4	0.727	INTRON fas
3L	5874709	3L_5874709_SNP [dm3] 3L_5881609_SNP [dm6]	G	A	1.252e^-4	0.727	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	24717499	3R_24717499_SNP [dm3] 3R_28891777_SNP [dm6]	C	T	1.258e^-4	0.727	UPSTREAM Doa INTRON Doa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	21515609	3R_21515609_SNP [dm3] 3R_25689887_SNP [dm6]	T	C	1.263e^-4	0.727	INTERGENIC
3L	20875540	3L_20875540_SNP [dm3] 3L_20882440_SNP [dm6]	T	C	1.263e^-4	0.727	INTRON CG32432
2R	8114301	2R_8114301_SNP [dm3] 2R_12226796_SNP [dm6]	T	G	1.270e^-4	0.727	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
2R	2096764	2R_2096764_SNP [dm3] 2R_6209259_SNP [dm6]	C	A	1.274e^-4	0.727	NON_SYNONYMOUS_CODING CG17994 DOWNSTREAM l_2_k14710	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	5060931	2R_5060931_SNP [dm3] 2R_9173426_SNP [dm6]	G	A	1.277e^-4	0.727	SYNONYMOUS_CODING Rme-8
3R	10793719	3R_10793719_SNP [dm3] 3R_14967997_SNP [dm6]	A	T	1.280e^-4	0.727	INTERGENIC
3R	23560898	3R_23560898_SNP [dm3] 3R_27735176_SNP [dm6]	G	C	1.281e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11442751	2L_11442751_SNP [dm3] 2L_11442751_SNP [dm6]	T	C	1.282e^-4	0.727	INTRON salm
3R	10793712	3R_10793712_SNP [dm3] 3R_14967990_SNP [dm6]	T	C	1.284e^-4	0.727	INTERGENIC
2L	5282343	2L_5282343_SNP [dm3] 2L_5282343_SNP [dm6]	A	G	1.286e^-4	0.727	SYNONYMOUS_CODING Bub1	TF binding site mE1_TFBS_cad
3R	9827824	3R_9827824_INS [dm3] 3R_14002102_INS [dm6]	A	AGA	1.291e^-4	0.727	INTRON rdx
2R	10165562	2R_10165562_SNP [dm3] 2R_14278057_SNP [dm6]	T	A	1.291e^-4	0.727	UTR_5_PRIME Ih
2L	7696702	2L_7696702_SNP [dm3] 2L_7696702_SNP [dm6]	A	C	1.296e^-4	0.727	NON_SYNONYMOUS_CODING Tep2 INTRON Tep2
3R	9735938	3R_9735938_SNP [dm3] 3R_13910216_SNP [dm6]	A	C	1.297e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	7565253	3R_7565253_SNP [dm3] 3R_11739531_SNP [dm6]	G	C	1.302e^-4	0.727	NON_SYNONYMOUS_CODING Blm
2R	18590320	2R_18590320_SNP [dm3] 2R_22702815_SNP [dm6]	G	A	1.303e^-4	0.727	SYNONYMOUS_CODING Obp59a INTRON CG30259
3R	18163708	3R_18163708_SNP [dm3] 3R_22337986_SNP [dm6]	A	G	1.304e^-4	0.727	INTRON CG5388
3L	13383610	3L_13383610_SNP [dm3] 3L_13390510_SNP [dm6]	T	C	1.307e^-4	0.727	UPSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18274097	3L_18274097_SNP [dm3] 3L_18280997_SNP [dm6]	G	T	1.315e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6628356	3R_6628356_SNP [dm3] 3R_10802634_SNP [dm6]	C	G	1.315e^-4	0.727	INTRON CG14692
2L	6194790	2L_6194790_SNP [dm3] 2L_6194790_SNP [dm6]	C	T	1.318e^-4	0.727	INTRON CG34380	TF binding site mE1_TFBS_chinmo
3R	10296546	3R_10296546_SNP [dm3] 3R_14470824_SNP [dm6]	A	T	1.319e^-4	0.727	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9922327	2R_9922327_SNP [dm3] 2R_14034822_SNP [dm6]	G	A	1.319e^-4	0.727	INTRON mam
2R	17968307	2R_17968307_DEL [dm3] 2R_22080802_DEL [dm6]	AA	A	1.321e^-4	0.727	INTRON Synj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12747590	3R_12747590_SNP [dm3] 3R_16921868_SNP [dm6]	A	T	1.323e^-4	0.727	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	7110979	2R_7110979_SNP [dm3] 2R_11223474_SNP [dm6]	G	T	1.324e^-4	0.727	UTR_5_PRIME CG7737 DOWNSTREAM Syx6 INTRON CG7737	TF binding site BDTNP1_TFBS_twi
2R	12663669	2R_12663669_SNP [dm3] 2R_16776164_SNP [dm6]	T	G	1.335e^-4	0.727	DOWNSTREAM Arp53D INTERGENIC
3R	25654921	3R_25654921_DEL [dm3] 3R_29829199_DEL [dm6]	TT	T	1.335e^-4	0.727	INTRON Atg16	enhancer mE1_CBP_Enhancers
3R	19317815	3R_19317815_SNP [dm3] 3R_23492093_SNP [dm6]	T	C	1.341e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14598743	3L_14598743_SNP [dm3] 3L_14605643_SNP [dm6]	C	T	1.343e^-4	0.727	INTERGENIC
3L	19096461	3L_19096461_DEL [dm3] 3L_19103361_DEL [dm6]	ATGGCAAAACCGA...	A	1.357e^-4	0.727	INTERGENIC
3R	10793716	3R_10793716_SNP [dm3] 3R_14967994_SNP [dm6]	T	A	1.357e^-4	0.727	INTERGENIC
2L	21751849	2L_21751849_SNP [dm3] 2L_21751849_SNP [dm6]	C	T	1.358e^-4	0.727	INTRON step
X	5549234	X_5549234_SNP [dm3] X_5655201_SNP [dm6]	A	T	1.362e^-4	0.727	INTRON CG42265
X	8736721	X_8736721_SNP [dm3] X_8842688_SNP [dm6]	T	G	1.365e^-4	0.727	INTRON CG12075
2L	11442828	2L_11442828_INS [dm3] 2L_11442828_INS [dm6]	A	AATTGAAATTATGCAC...	1.368e^-4	0.727	INTRON salm
3L	16020980	3L_16020980_SNP [dm3] 3L_16027880_SNP [dm6]	T	A	1.371e^-4	0.727	INTRON Notum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	7861450	3R_7861450_SNP [dm3] 3R_12035728_SNP [dm6]	A	G	1.375e^-4	0.727	DOWNSTREAM ssp5 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6093767	X_6093767_SNP [dm3] X_6199734_SNP [dm6]	T	A	1.380e^-4	0.727	DOWNSTREAM vanin-like INTRON CG43090
2L	11442989	2L_11442989_SNP [dm3] 2L_11442989_SNP [dm6]	T	C	1.388e^-4	0.727	INTRON salm
3L	14573514	3L_14573514_SNP [dm3] 3L_14580414_SNP [dm6]	G	A	1.389e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	3852779	3R_3852779_SNP [dm3] 3R_8027057_SNP [dm6]	T	A	1.395e^-4	0.727	START_GAINED CG2747 UTR_5_PRIME CG2747 INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2547227	3L_2547227_SNP [dm3] 3L_2547227_SNP [dm6]	G	C	1.397e^-4	0.727	INTRON Spn
3R	14670959	3R_14670959_SNP [dm3] 3R_18845237_SNP [dm6]	G	T	1.397e^-4	0.727	INTRON CG18208
3R	7888242	3R_7888242_INS [dm3] 3R_12062520_INS [dm6]	A	AAAATTTTT	1.402e^-4	0.727	INTRON CG14740
2L	19378443	2L_19378443_SNP [dm3] 2L_19378443_SNP [dm6]	C	G	1.405e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	14507478	3R_14507478_SNP [dm3] 3R_18681756_SNP [dm6]	T	C	1.406e^-4	0.727	INTRON CG7708
2L	1639168	2L_1639168_INS [dm3] 2L_1639168_INS [dm6]	A	AA	1.407e^-4	0.727	INTERGENIC
3R	25518912	3R_25518912_SNP [dm3] 3R_29693190_SNP [dm6]	A	G	1.409e^-4	0.727	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3178837	3L_3178837_SNP [dm3] 3L_3178837_SNP [dm6]	C	T	1.425e^-4	0.727	UPSTREAM Girdin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18219132	2R_18219132_SNP [dm3] 2R_22331627_SNP [dm6]	T	G	1.426e^-4	0.727	SYNONYMOUS_CODING T3dh UPSTREAM pgc INTRON pgc
2R	9591534	2R_9591534_SNP [dm3] 2R_13704029_SNP [dm6]	T	C	1.437e^-4	0.727	INTRON fas
3R	16696297	3R_16696297_SNP [dm3] 3R_20870575_SNP [dm6]	C	T	1.437e^-4	0.727	UPSTREAM TotA INTERGENIC
2L	14423131	2L_14423131_SNP [dm3] 2L_14423131_SNP [dm6]	A	G	1.439e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7743523	3R_7743523_SNP [dm3] 3R_11917801_SNP [dm6]	G	A	1.442e^-4	0.727	INTRON Cad87A
2R	10106093	2R_10106093_SNP [dm3] 2R_14218588_SNP [dm6]	T	A	1.447e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	16573566	3R_16573566_SNP [dm3] 3R_20747844_SNP [dm6]	C	T	1.451e^-4	0.727	SYNONYMOUS_CODING CG42322 DOWNSTREAM Prosalpha4T1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10793717	3R_10793717_INS [dm3] 3R_14967995_INS [dm6]	T	TA	1.454e^-4	0.727	INTERGENIC
3R	24702567	3R_24702567_SNP [dm3] 3R_28876845_SNP [dm6]	C	T	1.454e^-4	0.727	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12185838	3L_12185838_SNP [dm3] 3L_12192738_SNP [dm6]	G	A	1.456e^-4	0.727	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P
2L	7213309	2L_7213309_SNP [dm3] 2L_7213309_SNP [dm6]	T	C	1.464e^-4	0.727	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21855687	2L_21855687_SNP [dm3] 2L_21855687_SNP [dm6]	G	T	1.467e^-4	0.727	INTRON CR44917	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17035960	3R_17035960_SNP [dm3] 3R_21210238_SNP [dm6]	C	T	1.468e^-4	0.727	INTRON SNF4Agamma
X	6879453	X_6879453_SNP [dm3] X_6985420_SNP [dm6]	A	T	1.471e^-4	0.727	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	11736090	2R_11736090_SNP [dm3] 2R_15848585_SNP [dm6]	T	G	1.477e^-4	0.727	UTR_5_PRIME tun	TF binding site BDTNP1_TFBS_dl
X	20342122	X_20342122_SNP [dm3] X_20471095_SNP [dm6]	G	T	1.478e^-4	0.727	UTR_3_PRIME RhoGAP19D DOWNSTREAM RhoGAP19D	TF binding site BDTNP1_TFBS_dl
3R	13943755	3R_13943755_SNP [dm3] 3R_18118033_SNP [dm6]	T	C	1.480e^-4	0.727	INTRON sr	TF binding site BDTNP1_TFBS_twi
2L	2612354	2L_2612354_SNP [dm3] 2L_2612354_SNP [dm6]	T	C	1.488e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26182438	3R_26182438_SNP [dm3] 3R_30356716_SNP [dm6]	T	C	1.490e^-4	0.727	INTRON hdc
2L	11471917	2L_11471917_SNP [dm3] 2L_11471917_SNP [dm6]	G	A	1.507e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16899333	3R_16899333_MNP [dm3] 3R_21073611_MNP [dm6]	GTC	ACT	1.515e^-4	0.727	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9297662	3L_9297662_SNP [dm3] 3L_9304562_SNP [dm6]	C	G	1.522e^-4	0.727	INTERGENIC
2L	10464217	2L_10464217_SNP [dm3] 2L_10464217_SNP [dm6]	C	G	1.524e^-4	0.727	SYNONYMOUS_CODING RluA-1 UTR_3_PRIME RluA-1
2R	19665804	2R_19665804_SNP [dm3] 2R_23778281_SNP [dm6]	G	A	1.529e^-4	0.727	INTRON CG9850
X	17311902	X_17311902_SNP [dm3] X_17417869_SNP [dm6]	T	A	1.530e^-4	0.727	INTRON CG8611	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6570954	3R_6570954_SNP [dm3] 3R_10745232_SNP [dm6]	T	G	1.532e^-4	0.727	INTRON TkR86C
2L	12204208	2L_12204208_SNP [dm3] 2L_12204208_SNP [dm6]	G	A	1.534e^-4	0.727	INTRON aret
3L	8100732	3L_8100732_SNP [dm3] 3L_8107632_SNP [dm6]	C	T	1.536e^-4	0.727	INTRON Ect4	TF binding site BDTNP1_TFBS_twi
3R	21283656	3R_21283656_SNP [dm3] 3R_25457934_SNP [dm6]	A	G	1.539e^-4	0.727	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
2R	8089676	2R_8089676_SNP [dm3] 2R_12202171_SNP [dm6]	A	T	1.544e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8504960	2L_8504960_SNP [dm3] 2L_8504960_SNP [dm6]	G	A	1.544e^-4	0.727	INTRON Dh31
2R	9844250	2R_9844250_SNP [dm3] 2R_13956745_SNP [dm6]	G	A	1.546e^-4	0.727	INTRON AGO1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11309245	3L_11309245_SNP [dm3] 3L_11316145_SNP [dm6]	C	T	1.546e^-4	0.727	EXON CR44361	TF binding site BDTNP1_TFBS_twi
3L	2659451	3L_2659451_SNP [dm3] 3L_2659451_SNP [dm6]	T	G	1.549e^-4	0.727	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
2L	5676707	2L_5676707_DEL [dm3] 2L_5676707_DEL [dm6]	CC	C	1.560e^-4	0.727	INTERGENIC
X	13026115	X_13026115_SNP [dm3] X_13132082_SNP [dm6]	T	G	1.562e^-4	0.727	INTRON MFS10 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18219144	2R_18219144_SNP [dm3] 2R_22331639_SNP [dm6]	A	T	1.563e^-4	0.727	SPLICE_SITE_REGION T3dh UPSTREAM pgc INTRON pgc & 1 other
2R	13339147	2R_13339147_SNP [dm3] 2R_17451642_SNP [dm6]	A	T	1.568e^-4	0.727	UPSTREAM mthl3 INTRON mthl3	transposable element FlyBase
3R	16899327	3R_16899327_SNP [dm3] 3R_21073605_SNP [dm6]	T	C	1.569e^-4	0.727	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	1.571e^-4	0.727	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	6617855	3R_6617855_SNP [dm3] 3R_10792133_SNP [dm6]	T	C	1.574e^-4	0.727	UPSTREAM CG14687 DOWNSTREAM Mcm5 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	15214874	X_15214874_SNP [dm3] X_15320841_SNP [dm6]	G	T	1.585e^-4	0.727	UTR_5_PRIME Top1 UPSTREAM mir-4957 INTRON Top1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14820268	3R_14820268_SNP [dm3] 3R_18994546_SNP [dm6]	T	C	1.587e^-4	0.727	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11471855	2L_11471855_SNP [dm3] 2L_11471855_SNP [dm6]	A	C	1.595e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24711685	3R_24711685_SNP [dm3] 3R_28885963_SNP [dm6]	G	A	1.600e^-4	0.727	UTR_3_PRIME CG14526 INTRON CG33203
2L	8503747	2L_8503747_SNP [dm3] 2L_8503747_SNP [dm6]	C	A	1.604e^-4	0.727	INTRON Dh31
2R	20053086	2R_20053086_SNP [dm3] 2R_24165563_SNP [dm6]	G	C	1.604e^-4	0.727	INTRON CG3328
3L	14205309	3L_14205309_SNP [dm3] 3L_14212209_SNP [dm6]	A	G	1.611e^-4	0.727	SYNONYMOUS_CODING nuf UTR_5_PRIME nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3R	25627812	3R_25627812_SNP [dm3] 3R_29802090_SNP [dm6]	A	G	1.611e^-4	0.727	SYNONYMOUS_CODING CG7834 DOWNSTREAM Ice	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	3912877	3L_3912877_SNP [dm3] 3L_3912877_SNP [dm6]	C	A	1.617e^-4	0.727	INTRON Eip63F-1	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	745579	2L_745579_SNP [dm3] 2L_745579_SNP [dm6]	C	A	1.620e^-4	0.727	INTERGENIC
3L	18211422	3L_18211422_SNP [dm3] 3L_18218322_SNP [dm6]	A	G	1.623e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16975630	3L_16975630_SNP [dm3] 3L_16982530_SNP [dm6]	T	A	1.624e^-4	0.727	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
3L	17965562	3L_17965562_SNP [dm3] 3L_17972462_SNP [dm6]	G	C	1.627e^-4	0.727	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	14030400	3R_14030400_SNP [dm3] 3R_18204678_SNP [dm6]	G	C	1.629e^-4	0.727	INTRON CG7985
2R	12520188	2R_12520188_SNP [dm3] 2R_16632683_SNP [dm6]	A	G	1.629e^-4	0.727	NON_SYNONYMOUS_CODING Alk
2R	7309816	2R_7309816_SNP [dm3] 2R_11422311_SNP [dm6]	A	T	1.631e^-4	0.727	INTRON Drip
3L	16253192	3L_16253192_SNP [dm3] 3L_16260092_SNP [dm6]	G	A	1.633e^-4	0.727	UPSTREAM CG13053 INTERGENIC
2R	19936007	2R_19936007_SNP [dm3] 2R_24048484_SNP [dm6]	T	A	1.635e^-4	0.727	UPSTREAM sei INTRON sei & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	11464135	2L_11464135_INS [dm3] 2L_11464135_INS [dm6]	T	TT	1.645e^-4	0.728	INTERGENIC	TF binding site mE1_TFBS_cad
2L	20757454	2L_20757454_SNP [dm3] 2L_20757454_SNP [dm6]	G	T	1.646e^-4	0.728	NON_SYNONYMOUS_CODING CG9323 UPSTREAM dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_sens
X	10209851	X_10209851_SNP [dm3] X_10315818_SNP [dm6]	C	A	1.656e^-4	0.731	INTRON alpha-Man-I
3R	8214415	3R_8214415_SNP [dm3] 3R_12388693_SNP [dm6]	T	A	1.662e^-4	0.732	UTR_3_PRIME CG33098 UPSTREAM CG34402 DOWNSTREAM CG33098 INTRON CG34402
2R	10026324	2R_10026324_SNP [dm3] 2R_14138819_SNP [dm6]	C	T	1.680e^-4	0.733	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	4058399	3R_4058399_SNP [dm3] 3R_8232677_SNP [dm6]	C	G	1.687e^-4	0.733	UPSTREAM CR45551 & 1 other DOWNSTREAM CR45549 INTERGENIC
X	8563109	X_8563109_INS [dm3] X_8669076_INS [dm6]	T	TCGGGAAT	1.691e^-4	0.733	INTERGENIC
3R	3838102	3R_3838102_SNP [dm3] 3R_8012380_SNP [dm6]	C	G	1.693e^-4	0.733	NON_SYNONYMOUS_CODING CG10435	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3R	21582912	3R_21582912_SNP [dm3] 3R_25757190_SNP [dm6]	A	G	1.693e^-4	0.733	INTRON LpR1
2R	15685766	2R_15685766_SNP [dm3] 2R_19798261_SNP [dm6]	G	A	1.694e^-4	0.733	INTERGENIC
2L	11429853	2L_11429853_DEL [dm3] 2L_11429853_DEL [dm6]	CC	C	1.696e^-4	0.733	INTERGENIC
3L	19958144	3L_19958144_INS [dm3] 3L_19965044_INS [dm6]	A	ATGAATGTTGGCCAAAGACC...	1.696e^-4	0.733	INTRON Ac76E
3R	16696325	3R_16696325_SNP [dm3] 3R_20870603_SNP [dm6]	G	A	1.702e^-4	0.733	UPSTREAM TotA INTERGENIC
3R	16899318	3R_16899318_INS [dm3] 3R_21073596_INS [dm6]	T	TAC	1.703e^-4	0.733	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	5416625	3L_5416625_SNP [dm3] 3L_5423525_SNP [dm6]	T	A	1.709e^-4	0.733	UPSTREAM CG34391 INTERGENIC
2R	20147771	2R_20147771_SNP [dm3] 2R_24260248_SNP [dm6]	T	G	1.725e^-4	0.733	INTRON CG3376	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2636978	2R_2636978_DEL [dm3] 2R_6749473_DEL [dm6]	CTC	C	1.729e^-4	0.733	UPSTREAM Eb1 DOWNSTREAM CG3267 INTRON Eb1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2359671	3L_2359671_SNP [dm3] 3L_2359671_SNP [dm6]	C	A	1.730e^-4	0.733	UPSTREAM CG13801 INTERGENIC
2L	7111759	2L_7111759_SNP [dm3] 2L_7111759_SNP [dm6]	A	T	1.735e^-4	0.733	INTRON Pvf3
2L	16048796	2L_16048796_SNP [dm3] 2L_16048796_SNP [dm6]	T	A	1.737e^-4	0.733	DOWNSTREAM BicC & 1 other INTERGENIC
3L	14598684	3L_14598684_SNP [dm3] 3L_14605584_SNP [dm6]	A	T	1.751e^-4	0.733	INTERGENIC
2L	10559670	2L_10559670_SNP [dm3] 2L_10559670_SNP [dm6]	T	G	1.754e^-4	0.733	INTRON Trim9
3R	25627821	3R_25627821_SNP [dm3] 3R_29802099_SNP [dm6]	C	G	1.755e^-4	0.733	SYNONYMOUS_CODING CG7834 DOWNSTREAM Ice	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	25627824	3R_25627824_SNP [dm3] 3R_29802102_SNP [dm6]	C	G	1.764e^-4	0.733	SYNONYMOUS_CODING CG7834 DOWNSTREAM Ice	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	7697940	2L_7697940_SNP [dm3] 2L_7697940_SNP [dm6]	C	A	1.764e^-4	0.733	INTRON Tep2
2R	19664014	2R_19664014_SNP [dm3] 2R_23776491_SNP [dm6]	A	G	1.765e^-4	0.733	INTRON CG9850
2L	14677161	2L_14677161_SNP [dm3] 2L_14677161_SNP [dm6]	A	G	1.768e^-4	0.733	INTRON osp
2L	10559676	2L_10559676_SNP [dm3] 2L_10559676_SNP [dm6]	A	C	1.773e^-4	0.733	INTRON Trim9
2R	8116777	2R_8116777_SNP [dm3] 2R_12229272_SNP [dm6]	C	A	1.775e^-4	0.733	UTR_5_PRIME CG8854
2R	20127323	2R_20127323_SNP [dm3] 2R_24239800_SNP [dm6]	G	A	1.777e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	7696708	2L_7696708_SNP [dm3] 2L_7696708_SNP [dm6]	A	C	1.780e^-4	0.733	NON_SYNONYMOUS_CODING Tep2 INTRON Tep2
2L	11437550	2L_11437550_SNP [dm3] 2L_11437550_SNP [dm6]	G	A	1.781e^-4	0.733	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2929509	2L_2929509_SNP [dm3] 2L_2929509_SNP [dm6]	C	T	1.786e^-4	0.733	INTRON lilli
2R	8140742	2R_8140742_DEL [dm3] 2R_12253237_DEL [dm6]	TGCTAGCTCATTT...	T	1.786e^-4	0.733	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7570118	2R_7570118_SNP [dm3] 2R_11682613_SNP [dm6]	G	A	1.786e^-4	0.733	INTRON Buffy
3R	21585441	3R_21585441_SNP [dm3] 3R_25759719_SNP [dm6]	T	A	1.813e^-4	0.735	INTRON LpR1
2L	21705735	2L_21705735_SNP [dm3] 2L_21705735_SNP [dm6]	A	G	1.818e^-4	0.735	INTRON CG31619	transposable element FlyBase
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	1.820e^-4	0.735	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	11441320	2L_11441320_INS [dm3] 2L_11441320_INS [dm6]	T	TACAGCT	1.821e^-4	0.735	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	6439773	X_6439773_SNP [dm3] X_6545740_SNP [dm6]	G	A	1.823e^-4	0.735	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12185848	3L_12185848_SNP [dm3] 3L_12192748_SNP [dm6]	T	C	1.823e^-4	0.735	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site mE1_TFBS_sens
3R	7735809	3R_7735809_SNP [dm3] 3R_11910087_SNP [dm6]	A	G	1.828e^-4	0.735	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3513428	3R_3513428_SNP [dm3] 3R_7687706_SNP [dm6]	C	T	1.834e^-4	0.735	INTRON Nlg1
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	1.837e^-4	0.735	INTRON salm
2L	21743227	2L_21743227_SNP [dm3] 2L_21743227_SNP [dm6]	T	C	1.841e^-4	0.735	INTRON step	transposable element FlyBase
2R	9042232	2R_9042232_SNP [dm3] 2R_13154727_SNP [dm6]	T	C	1.842e^-4	0.735	SYNONYMOUS_CODING TppII
2L	1477367	2L_1477367_SNP [dm3] 2L_1477367_SNP [dm6]	G	A	1.845e^-4	0.735	INTERGENIC
X	6783994	X_6783994_DEL [dm3] X_6889961_DEL [dm6]	CCCTATCCCC	C	1.848e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14677296	2L_14677296_SNP [dm3] 2L_14677296_SNP [dm6]	A	C	1.852e^-4	0.735	INTRON osp
3R	18930613	3R_18930613_SNP [dm3] 3R_23104891_SNP [dm6]	T	C	1.855e^-4	0.735	INTRON CG13830
2R	12116015	2R_12116015_SNP [dm3] 2R_16228510_SNP [dm6]	G	A	1.855e^-4	0.735	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16899289	3R_16899289_SNP [dm3] 3R_21073567_SNP [dm6]	T	C	1.857e^-4	0.735	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	3999204	3L_3999204_SNP [dm3] 3L_3999204_SNP [dm6]	A	T	1.862e^-4	0.735	INTERGENIC
2R	9840335	2R_9840335_SNP [dm3] 2R_13952830_SNP [dm6]	C	T	1.866e^-4	0.735	INTRON AGO1	TF binding site BDTNP1_TFBS_dl
3R	3848761	3R_3848761_SNP [dm3] 3R_8023039_SNP [dm6]	G	A	1.872e^-4	0.735	SYNONYMOUS_CODING CG2747	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10132163	2R_10132163_SNP [dm3] 2R_14244658_SNP [dm6]	G	A	1.873e^-4	0.735	INTRON CG8503
3L	1288381	3L_1288381_SNP [dm3] 3L_1288381_SNP [dm6]	C	G	1.878e^-4	0.735	DOWNSTREAM CG32333 INTRON CG32333
3R	7859559	3R_7859559_SNP [dm3] 3R_12033837_SNP [dm6]	T	C	1.887e^-4	0.737	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18199358	2R_18199358_SNP [dm3] 2R_22311853_SNP [dm6]	C	G	1.902e^-4	0.741	UTR_5_PRIME wdp UPSTREAM wdp	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2795075	3L_2795075_SNP [dm3] 3L_2795075_SNP [dm6]	T	C	1.904e^-4	0.741	INTRON CG43444	TF binding site mE1_TFBS_cad
3L	11252075	3L_11252075_SNP [dm3] 3L_11258975_SNP [dm6]	G	A	1.914e^-4	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18204852	2R_18204852_DEL [dm3] 2R_22317347_DEL [dm6]	TT	T	1.914e^-4	0.742	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	7699402	2L_7699402_SNP [dm3] 2L_7699402_SNP [dm6]	C	T	1.918e^-4	0.742	SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
3L	15688754	3L_15688754_SNP [dm3] 3L_15695654_SNP [dm6]	A	G	1.935e^-4	0.746	INTERGENIC
X	6784013	X_6784013_SNP [dm3] X_6889980_SNP [dm6]	T	A	1.943e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10710956	3L_10710956_SNP [dm3] 3L_10717856_SNP [dm6]	C	A	1.947e^-4	0.746	INTERGENIC
3R	26914130	3R_26914130_SNP [dm3] 3R_31088408_SNP [dm6]	A	C	1.949e^-4	0.746	INTERGENIC
2R	8173240	2R_8173240_SNP [dm3] 2R_12285735_SNP [dm6]	T	A	1.952e^-4	0.746	UPSTREAM CG42700 INTRON CG42700
3L	10232696	3L_10232696_SNP [dm3] 3L_10239596_SNP [dm6]	T	A	1.956e^-4	0.746	UPSTREAM CR45403 INTERGENIC
X	2804500	X_2804500_SNP [dm3] X_2910467_SNP [dm6]	C	G	1.956e^-4	0.746	INTRON kirre
2L	11441399	2L_11441399_SNP [dm3] 2L_11441399_SNP [dm6]	G	A	1.969e^-4	0.749	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	17577684	3R_17577684_SNP [dm3] 3R_21751962_SNP [dm6]	C	G	1.973e^-4	0.749	SYNONYMOUS_CODING CG31233	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21581659	3L_21581659_SNP [dm3] 3L_21588559_SNP [dm6]	C	T	1.982e^-4	0.751	INTRON TfAP-2
2R	7050001	2R_7050001_SNP [dm3] 2R_11162496_SNP [dm6]	C	G	1.986e^-4	0.751	INTRON shn & 1 other
3R	19920244	3R_19920244_SNP [dm3] 3R_24094522_SNP [dm6]	T	C	1.990e^-4	0.751	INTRON 4EHP
3L	12789740	3L_12789740_SNP [dm3] 3L_12796640_SNP [dm6]	G	A	1.999e^-4	0.752	DOWNSTREAM CG42709 INTRON Atg1	TF binding site mE1_TFBS_Trl
2L	7061147	2L_7061147_DEL [dm3] 2L_7061147_DEL [dm6]	ACAGCAA	A	2.005e^-4	0.752	UPSTREAM CG31907
3L	8651298	3L_8651298_SNP [dm3] 3L_8658198_SNP [dm6]	A	G	2.009e^-4	0.752	INTERGENIC
2R	14515226	2R_14515226_SNP [dm3] 2R_18627721_SNP [dm6]	C	A	2.012e^-4	0.752	UPSTREAM Eip55E DOWNSTREAM Sec6 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5196405	X_5196405_SNP [dm3] X_5302372_SNP [dm6]	C	G	2.018e^-4	0.752	DOWNSTREAM CG3323 INTRON CG42749
2R	6891739	2R_6891739_SNP [dm3] 2R_11004234_SNP [dm6]	C	T	2.023e^-4	0.752	INTRON luna
2L	18919852	2L_18919852_SNP [dm3] 2L_18919852_SNP [dm6]	G	C	2.032e^-4	0.752	INTRON ssp3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	19990723	3R_19990723_SNP [dm3] 3R_24165001_SNP [dm6]	C	T	2.034e^-4	0.752	SYNONYMOUS_CODING Apc2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12118234	2L_12118234_SNP [dm3] 2L_12118234_SNP [dm6]	T	C	2.040e^-4	0.752	INTRON CG17211
2L	21996105	2L_21996105_SNP [dm3] 2L_21996105_SNP [dm6]	G	A	2.057e^-4	0.752	INTERGENIC
2R	11267202	2R_11267202_MNP [dm3] 2R_15379697_MNP [dm6]	AAG	CCT	2.059e^-4	0.752	NON_SYNONYMOUS_CODING dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8096916	3L_8096916_SNP [dm3] 3L_8103816_SNP [dm6]	T	C	2.062e^-4	0.752	SYNONYMOUS_CODING Ect4	TF binding site mE1_TFBS_cad
2L	11471429	2L_11471429_SNP [dm3] 2L_11471429_SNP [dm6]	C	G	2.064e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16749744	3R_16749744_SNP [dm3] 3R_20924022_SNP [dm6]	A	T	2.068e^-4	0.752	INTRON CG31191 & 1 other	TF binding site mE1_TFBS_inv
3R	8439929	3R_8439929_SNP [dm3] 3R_12614207_SNP [dm6]	C	T	2.080e^-4	0.752	INTERGENIC
3L	9328572	3L_9328572_SNP [dm3] 3L_9335472_SNP [dm6]	C	T	2.085e^-4	0.752	UPSTREAM PGRP-LA INTRON PGRP-LA
3L	3180264	3L_3180264_SNP [dm3] 3L_3180264_SNP [dm6]	C	T	2.086e^-4	0.752	SYNONYMOUS_CODING Girdin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	8114221	2R_8114221_SNP [dm3] 2R_12226716_SNP [dm6]	G	T	2.088e^-4	0.752	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	2.089e^-4	0.752	INTRON Ca-beta
2L	21749629	2L_21749629_SNP [dm3] 2L_21749629_SNP [dm6]	G	A	2.092e^-4	0.752	INTRON step	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11073560	X_11073560_SNP [dm3] X_11179527_SNP [dm6]	C	T	2.094e^-4	0.752	INTERGENIC
3L	20175945	3L_20175945_SNP [dm3] 3L_20182845_SNP [dm6]	A	G	2.099e^-4	0.752	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21751646	2L_21751646_SNP [dm3] 2L_21751646_SNP [dm6]	A	T	2.100e^-4	0.752	INTRON step
3L	5794532	3L_5794532_SNP [dm3] 3L_5801432_SNP [dm6]	G	A	2.104e^-4	0.752	INTRON S6k	TF binding site mE1_TFBS_cad
3L	15476155	3L_15476155_SNP [dm3] 3L_15483055_SNP [dm6]	G	A	2.107e^-4	0.752	INTERGENIC
2L	11461637	2L_11461637_SNP [dm3] 2L_11461637_SNP [dm6]	G	A	2.111e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13325598	X_13325598_SNP [dm3] X_13431565_SNP [dm6]	A	T	2.114e^-4	0.752	INTERGENIC
3L	2621662	3L_2621662_SNP [dm3] 3L_2621662_SNP [dm6]	C	A	2.116e^-4	0.752	INTRON Pxn
2R	19107678	2R_19107678_SNP [dm3] 2R_23220155_SNP [dm6]	C	T	2.119e^-4	0.752	INTERGENIC
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	2.132e^-4	0.752	INTRON Octbeta3R
2L	4390050	2L_4390050_SNP [dm3] 2L_4390050_SNP [dm6]	A	T	2.133e^-4	0.752	INTRON Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10130223	3R_10130223_SNP [dm3] 3R_14304501_SNP [dm6]	T	A	2.134e^-4	0.752	UTR_3_PRIME su_Hw_ DOWNSTREAM CG3259	TF binding site mE1_TFBS_cad
2R	15320704	2R_15320704_SNP [dm3] 2R_19433199_SNP [dm6]	A	C	2.137e^-4	0.752	NON_SYNONYMOUS_CODING Fak INTRON Fak	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11452026	2L_11452026_SNP [dm3] 2L_11452026_SNP [dm6]	T	A	2.139e^-4	0.752	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21725984	2L_21725984_DEL [dm3] 2L_21725984_DEL [dm6]	GTTTCTC	G	2.139e^-4	0.752	INTRON CG31619
2L	21725993	2L_21725993_DEL [dm3] 2L_21725993_DEL [dm6]	TTTTGCAGGTA...	T	2.139e^-4	0.752	INTRON CG31619
2L	7039976	2L_7039976_SNP [dm3] 2L_7039976_SNP [dm6]	G	A	2.142e^-4	0.752	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25655818	3R_25655818_SNP [dm3] 3R_29830096_SNP [dm6]	C	G	2.145e^-4	0.752	INTRON Atg16	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19664319	2R_19664319_SNP [dm3] 2R_23776796_SNP [dm6]	T	G	2.150e^-4	0.752	INTRON CG9850
2L	7402216	2L_7402216_SNP [dm3] 2L_7402216_SNP [dm6]	T	C	2.152e^-4	0.752	UPSTREAM CG5171 INTRON CG5171
2R	8285099	2R_8285099_SNP [dm3] 2R_12397594_SNP [dm6]	G	A	2.158e^-4	0.752	SYNONYMOUS_CODING CG30048	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16087329	2R_16087329_SNP [dm3] 2R_20199824_SNP [dm6]	A	T	2.169e^-4	0.753	INTERGENIC
2L	9037605	2L_9037605_SNP [dm3] 2L_9037605_SNP [dm6]	T	C	2.180e^-4	0.753	INTERGENIC
2R	8660318	2R_8660318_SNP [dm3] 2R_12772813_SNP [dm6]	A	T	2.198e^-4	0.753	INTERGENIC
2R	20369564	2R_20369564_SNP [dm3] 2R_24482041_SNP [dm6]	A	G	2.199e^-4	0.753	INTRON CG13579
2R	20369570	2R_20369570_SNP [dm3] 2R_24482047_SNP [dm6]	A	G	2.199e^-4	0.753	INTRON CG13579
3R	24702653	3R_24702653_SNP [dm3] 3R_28876931_SNP [dm6]	G	A	2.202e^-4	0.753	NON_SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21232827	3R_21232827_SNP [dm3] 3R_25407105_SNP [dm6]	G	A	2.203e^-4	0.753	INTRON Fur1
X	14299301	X_14299301_INS [dm3] X_14405268_INS [dm6]	A	AGAA	2.204e^-4	0.753	INTRON dpr8
2R	13338994	2R_13338994_SNP [dm3] 2R_17451489_SNP [dm6]	T	C	2.229e^-4	0.753	UPSTREAM mthl3 INTRON mthl3
3R	9733360	3R_9733360_SNP [dm3] 3R_13907638_SNP [dm6]	G	A	2.233e^-4	0.753	INTERGENIC
2L	4390054	2L_4390054_SNP [dm3] 2L_4390054_SNP [dm6]	T	G	2.237e^-4	0.753	INTRON Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11452391	2L_11452391_SNP [dm3] 2L_11452391_SNP [dm6]	C	A	2.238e^-4	0.753	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8117839	2R_8117839_SNP [dm3] 2R_12230334_SNP [dm6]	G	A	2.245e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	21752234	2L_21752234_SNP [dm3] 2L_21752234_SNP [dm6]	A	T	2.251e^-4	0.753	INTRON step	TF binding site BDTNP1_TFBS_dl
2L	22029332	2L_22029332_SNP [dm3] 2L_22029332_SNP [dm6]	C	T	2.257e^-4	0.753	INTERGENIC
3R	10119687	3R_10119687_DEL [dm3] 3R_14293965_DEL [dm6]	TTT	T	2.257e^-4	0.753	INTRON CG12207
2R	13339382	2R_13339382_SNP [dm3] 2R_17451877_SNP [dm6]	G	A	2.260e^-4	0.753	UPSTREAM mthl3 INTRON mthl3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	10161625	2R_10161625_SNP [dm3] 2R_14274120_SNP [dm6]	G	T	2.263e^-4	0.753	SYNONYMOUS_CODING conv
3L	13382978	3L_13382978_SNP [dm3] 3L_13389878_SNP [dm6]	C	T	2.266e^-4	0.753	UTR_5_PRIME Poc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7910440	2R_7910440_SNP [dm3] 2R_12022935_SNP [dm6]	G	A	2.267e^-4	0.753	DOWNSTREAM CG8964 INTERGENIC
3R	16899329	3R_16899329_SNP [dm3] 3R_21073607_SNP [dm6]	A	G	2.273e^-4	0.753	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13505831	2R_13505831_SNP [dm3] 2R_17618326_SNP [dm6]	T	A	2.277e^-4	0.753	UPSTREAM CG44403 INTRON CG10936
2R	8095506	2R_8095506_SNP [dm3] 2R_12208001_SNP [dm6]	T	A	2.281e^-4	0.753	DOWNSTREAM CR45276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	449357	3L_449357_SNP [dm3] 3L_449357_SNP [dm6]	C	T	2.284e^-4	0.753	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15096239	X_15096239_SNP [dm3] X_15202206_SNP [dm6]	C	T	2.289e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_inv
2R	7106815	2R_7106815_SNP [dm3] 2R_11219310_SNP [dm6]	C	A	2.293e^-4	0.753	UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	15209832	X_15209832_SNP [dm3] X_15315799_SNP [dm6]	T	G	2.296e^-4	0.753	SYNONYMOUS_CODING gce EXON CR44961
3R	7924718	3R_7924718_DEL [dm3] 3R_12098996_DEL [dm6]	TGGCTT	T	2.298e^-4	0.753	INTRON dpr17	TF binding site mE1_TFBS_HSA
2R	19387091	2R_19387091_SNP [dm3] 2R_23499568_SNP [dm6]	A	G	2.300e^-4	0.753	UPSTREAM CG13558 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	11464676	2L_11464676_SNP [dm3] 2L_11464676_SNP [dm6]	A	G	2.320e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7821020	3R_7821020_SNP [dm3] 3R_11995298_SNP [dm6]	G	A	2.326e^-4	0.753	INTRON Tk	TF binding site mE1_TFBS_chinmo
2R	12030703	2R_12030703_SNP [dm3] 2R_16143198_SNP [dm6]	G	A	2.328e^-4	0.753	UTR_5_PRIME Aats-cys DOWNSTREAM CG30094	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	11448231	2L_11448231_SNP [dm3] 2L_11448231_SNP [dm6]	T	A	2.331e^-4	0.753	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6792036	X_6792036_SNP [dm3] X_6898003_SNP [dm6]	G	C	2.346e^-4	0.753	INTERGENIC
2R	11267142	2R_11267142_SNP [dm3] 2R_15379637_SNP [dm6]	G	C	2.356e^-4	0.753	NON_SYNONYMOUS_CODING dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10106166	2R_10106166_SNP [dm3] 2R_14218661_SNP [dm6]	A	C	2.357e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	20369566	2R_20369566_SNP [dm3] 2R_24482043_SNP [dm6]	A	T	2.358e^-4	0.753	INTRON CG13579
3R	16698098	3R_16698098_SNP [dm3] 3R_20872376_SNP [dm6]	G	T	2.365e^-4	0.753	UPSTREAM TotC DOWNSTREAM TotA INTERGENIC
3L	14205821	3L_14205821_SNP [dm3] 3L_14212721_SNP [dm6]	T	A	2.370e^-4	0.753	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
X	12585183	X_12585183_SNP [dm3] X_12691150_SNP [dm6]	G	T	2.371e^-4	0.753	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19964265	3R_19964265_SNP [dm3] 3R_24138543_SNP [dm6]	G	T	2.374e^-4	0.753	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16034132	2R_16034132_SNP [dm3] 2R_20146627_SNP [dm6]	A	G	2.374e^-4	0.753	SYNONYMOUS_CODING CG11041
2L	21637112	2L_21637112_SNP [dm3] 2L_21637112_SNP [dm6]	G	A	2.383e^-4	0.753	INTRON Ac3	transposable element FlyBase
3R	21232871	3R_21232871_SNP [dm3] 3R_25407149_SNP [dm6]	G	A	2.388e^-4	0.753	INTRON Fur1
3R	13419200	3R_13419200_SNP [dm3] 3R_17593478_SNP [dm6]	T	C	2.390e^-4	0.753	UPSTREAM CG7587 INTERGENIC
2L	21751733	2L_21751733_SNP [dm3] 2L_21751733_SNP [dm6]	T	C	2.397e^-4	0.753	INTRON step
3R	20489173	3R_20489173_DEL [dm3] 3R_24663451_DEL [dm6]	TT	T	2.397e^-4	0.753	INTRON slo	regulatory region REDfly_CRMs
2L	10197330	2L_10197330_SNP [dm3] 2L_10197330_SNP [dm6]	G	A	2.398e^-4	0.753	INTRON Sur
2L	10197336	2L_10197336_SNP [dm3] 2L_10197336_SNP [dm6]	C	T	2.398e^-4	0.753	INTRON Sur
2L	7039974	2L_7039974_SNP [dm3] 2L_7039974_SNP [dm6]	A	C	2.398e^-4	0.753	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5654032	2L_5654032_SNP [dm3] 2L_5654032_SNP [dm6]	T	C	2.399e^-4	0.753	INTRON CG31646
3R	19323680	3R_19323680_INS [dm3] 3R_23497958_INS [dm6]	C	CT	2.405e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2484195	X_2484195_SNP [dm3] X_2590162_SNP [dm6]	T	G	2.406e^-4	0.753	INTRON egh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10232528	3L_10232528_SNP [dm3] 3L_10239428_SNP [dm6]	A	G	2.409e^-4	0.753	UPSTREAM CR45403 INTERGENIC
2R	7104897	2R_7104897_SNP [dm3] 2R_11217392_SNP [dm6]	G	T	2.412e^-4	0.753	UTR_3_PRIME shn DOWNSTREAM CG9084
3R	18246679	3R_18246679_SNP [dm3] 3R_22420957_SNP [dm6]	G	A	2.424e^-4	0.753	UTR_5_PRIME Nop56 UPSTREAM mats	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5025853	2R_5025853_SNP [dm3] 2R_9138348_SNP [dm6]	A	G	2.427e^-4	0.753	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13797681	2R_13797681_SNP [dm3] 2R_17910176_SNP [dm6]	A	C	2.432e^-4	0.753	INTRON Elk
3R	14506551	3R_14506551_SNP [dm3] 3R_18680829_SNP [dm6]	C	T	2.434e^-4	0.753	UTR_5_PRIME CG7708 DOWNSTREAM CG7706
3R	21257908	3R_21257908_SNP [dm3] 3R_25432186_SNP [dm6]	T	G	2.434e^-4	0.753	INTRON Fur1
3R	24714076	3R_24714076_SNP [dm3] 3R_28888354_SNP [dm6]	G	A	2.442e^-4	0.753	SYNONYMOUS_CODING Doa UPSTREAM CG33203 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19229683	3L_19229683_SNP [dm3] 3L_19236583_SNP [dm6]	C	T	2.449e^-4	0.753	SYNONYMOUS_CODING CG33647
2L	21108159	2L_21108159_SNP [dm3] 2L_21108159_SNP [dm6]	C	T	2.469e^-4	0.753	UTR_5_PRIME Nhe2 UPSTREAM CR44056 INTRON Nhe2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24722215	3R_24722215_SNP [dm3] 3R_28896493_SNP [dm6]	G	A	2.470e^-4	0.753	INTRON Doa
2R	2636647	2R_2636647_SNP [dm3] 2R_6749142_SNP [dm6]	G	T	2.479e^-4	0.753	UPSTREAM Eb1 DOWNSTREAM CG3267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3R	6628369	3R_6628369_SNP [dm3] 3R_10802647_SNP [dm6]	A	C	2.483e^-4	0.753	INTRON CG14692
2L	21730596	2L_21730596_SNP [dm3] 2L_21730596_SNP [dm6]	T	C	2.498e^-4	0.753	INTERGENIC	transposable element FlyBase
2L	4101235	2L_4101235_SNP [dm3] 2L_4101235_SNP [dm6]	T	A	2.499e^-4	0.753	INTRON ed
3R	26847406	3R_26847406_SNP [dm3] 3R_31021684_SNP [dm6]	A	C	2.502e^-4	0.753	INTERGENIC
2L	8525339	2L_8525339_SNP [dm3] 2L_8525339_SNP [dm6]	G	A	2.503e^-4	0.753	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3R	19324300	3R_19324300_DEL [dm3] 3R_23498578_DEL [dm6]	AATATCA	A	2.504e^-4	0.753	INTERGENIC
2R	12777826	2R_12777826_SNP [dm3] 2R_16890321_SNP [dm6]	G	C	2.504e^-4	0.753	INTRON CG8910
2R	8114368	2R_8114368_SNP [dm3] 2R_12226863_SNP [dm6]	T	C	2.513e^-4	0.753	UPSTREAM CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
3R	23031305	3R_23031305_SNP [dm3] 3R_27205583_SNP [dm6]	G	A	2.526e^-4	0.753	INTERGENIC	regulatory region REDfly_CRMs
3R	26390055	3R_26390055_SNP [dm3] 3R_30564333_SNP [dm6]	C	G	2.529e^-4	0.753	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25252115	3R_25252115_SNP [dm3] 3R_29426393_SNP [dm6]	A	G	2.545e^-4	0.753	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl
3R	20697081	3R_20697081_SNP [dm3] 3R_24871359_SNP [dm6]	G	T	2.547e^-4	0.753	UTR_3_PRIME CG3744 UPSTREAM CycB3 DOWNSTREAM CG3744	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	7742392	X_7742392_SNP [dm3] X_7848359_SNP [dm6]	G	T	2.550e^-4	0.753	INTERGENIC
2R	18200328	2R_18200328_DEL [dm3] 2R_22312823_DEL [dm6]	TCGCACTCGCCTTGTTTGTT...	T	2.555e^-4	0.753	UPSTREAM CR44758 & 1 other INTERGENIC
2L	21166539	2L_21166539_SNP [dm3] 2L_21166539_SNP [dm6]	G	T	2.559e^-4	0.753	NON_SYNONYMOUS_CODING CG43346 UTR_3_PRIME CG43345 DOWNSTREAM CG9246	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11378528	2L_11378528_SNP [dm3] 2L_11378528_SNP [dm6]	C	T	2.571e^-4	0.753	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	15914467	2L_15914467_SNP [dm3] 2L_15914467_SNP [dm6]	T	A	2.575e^-4	0.753	INTRON beat-Ib
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	2.575e^-4	0.753	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11378536	2L_11378536_SNP [dm3] 2L_11378536_SNP [dm6]	A	C	2.578e^-4	0.753	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	5706169	3L_5706169_SNP [dm3] 3L_5713069_SNP [dm6]	C	A	2.580e^-4	0.753	UPSTREAM CG44521 INTRON sif
2R	14163919	2R_14163919_SNP [dm3] 2R_18276414_SNP [dm6]	C	T	2.587e^-4	0.753	SYNONYMOUS_CODING Ote	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11447487	2L_11447487_SNP [dm3] 2L_11447487_SNP [dm6]	G	A	2.592e^-4	0.753	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10816434	2L_10816434_SNP [dm3] 2L_10816434_SNP [dm6]	C	T	2.599e^-4	0.753	INTRON Nos
2L	19891170	2L_19891170_SNP [dm3] 2L_19891170_SNP [dm6]	A	G	2.599e^-4	0.753	SYNONYMOUS_CODING CG10481 INTRON sick
3L	11448393	3L_11448393_SNP [dm3] 3L_11455293_SNP [dm6]	C	G	2.603e^-4	0.753	INTERGENIC
3R	7747933	3R_7747933_SNP [dm3] 3R_11922211_SNP [dm6]	A	G	2.605e^-4	0.753	INTRON Cad87A
3R	13027942	3R_13027942_SNP [dm3] 3R_17202220_SNP [dm6]	G	T	2.605e^-4	0.753	UPSTREAM Mur89F INTERGENIC
2R	10269065	2R_10269065_SNP [dm3] 2R_14381560_SNP [dm6]	C	T	2.607e^-4	0.753	INTRON Dh44-R1
2R	14219986	2R_14219986_SNP [dm3] 2R_18332481_SNP [dm6]	C	T	2.617e^-4	0.753	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3R	13475498	3R_13475498_SNP [dm3] 3R_17649776_SNP [dm6]	G	A	2.617e^-4	0.753	INTRON CG14322
X	13607642	X_13607642_SNP [dm3] X_13713609_SNP [dm6]	C	T	2.621e^-4	0.753	SYNONYMOUS_CODING NnaD INTRON CG9940 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3R	10133742	3R_10133742_SNP [dm3] 3R_14308020_SNP [dm6]	A	G	2.633e^-4	0.753	INTRON su_Hw_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	4700984	2R_4700984_SNP [dm3] 2R_8813479_SNP [dm6]	T	C	2.633e^-4	0.753	INTRON sns
3L	5874879	3L_5874879_SNP [dm3] 3L_5881779_SNP [dm6]	C	T	2.635e^-4	0.753	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	20913489	3R_20913489_SNP [dm3] 3R_25087767_SNP [dm6]	G	C	2.639e^-4	0.753	INTERGENIC
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	2.640e^-4	0.753	INTERGENIC
3R	16929437	3R_16929437_SNP [dm3] 3R_21103715_SNP [dm6]	A	G	2.644e^-4	0.753	SYNONYMOUS_CODING CG5745	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25106513	3R_25106513_SNP [dm3] 3R_29280791_SNP [dm6]	A	G	2.646e^-4	0.753	INTERGENIC	regulatory region REDfly_CRMs
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	2.647e^-4	0.753	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8226635	3R_8226635_SNP [dm3] 3R_12400913_SNP [dm6]	T	C	2.659e^-4	0.753	SYNONYMOUS_CODING lig3 INTRON CG34402	TF binding site mE1_TFBS_sens
2L	2485819	2L_2485819_SNP [dm3] 2L_2485819_SNP [dm6]	G	C	2.664e^-4	0.753	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
X	6879881	X_6879881_SNP [dm3] X_6985848_SNP [dm6]	A	G	2.672e^-4	0.753	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	15174262	2R_15174262_SNP [dm3] 2R_19286757_SNP [dm6]	A	G	2.678e^-4	0.753	UPSTREAM CG10474 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13611294	3L_13611294_SNP [dm3] 3L_13618194_SNP [dm6]	T	A	2.679e^-4	0.753	INTRON bru-3
3L	17998087	3L_17998087_INS [dm3] 3L_18004987_INS [dm6]	A	AA	2.684e^-4	0.753	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	12748721	3R_12748721_SNP [dm3] 3R_16922999_SNP [dm6]	G	C	2.691e^-4	0.753	EXON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18756200	3L_18756200_INS [dm3] 3L_18763100_INS [dm6]	GGC	ATTATA	2.696e^-4	0.753	INTRON ftz-f1
2R	10705942	2R_10705942_SNP [dm3] 2R_14818437_SNP [dm6]	T	C	2.697e^-4	0.753	SYNONYMOUS_CODING CG10202	TF binding site mE1_TFBS_sens
3R	3848613	3R_3848613_SNP [dm3] 3R_8022891_SNP [dm6]	G	A	2.698e^-4	0.753	SPLICE_SITE_REGION CG2747 SYNONYMOUS_CODING CG2747	TF binding site mE1_TFBS_cad
3L	14204414	3L_14204414_SNP [dm3] 3L_14211314_SNP [dm6]	T	G	2.702e^-4	0.753	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12083653	2R_12083653_SNP [dm3] 2R_16196148_SNP [dm6]	G	T	2.706e^-4	0.753	UTR_5_PRIME calypso UPSTREAM CG44242 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	2.708e^-4	0.753	INTERGENIC
2R	5053253	2R_5053253_SNP [dm3] 2R_9165748_SNP [dm6]	C	T	2.711e^-4	0.753	NON_SYNONYMOUS_CODING Rad51C UPSTREAM CG8046 DOWNSTREAM CG42382	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	15430575	2R_15430575_SNP [dm3] 2R_19543070_SNP [dm6]	A	G	2.716e^-4	0.753	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12083286	2R_12083286_SNP [dm3] 2R_16195781_SNP [dm6]	T	C	2.716e^-4	0.753	SYNONYMOUS_CODING calypso UPSTREAM CG44242	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	12848906	3L_12848906_SNP [dm3] 3L_12855806_SNP [dm6]	G	C	2.720e^-4	0.753	SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6135425	3R_6135425_SNP [dm3] 3R_10309703_SNP [dm6]	A	G	2.723e^-4	0.753	SPLICE_SITE_REGION CG6293 INTRON CG6293
2L	1477230	2L_1477230_SNP [dm3] 2L_1477230_SNP [dm6]	A	T	2.727e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_sens
2R	10026497	2R_10026497_SNP [dm3] 2R_14138992_SNP [dm6]	G	A	2.727e^-4	0.753	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	6880047	X_6880047_SNP [dm3] X_6986014_SNP [dm6]	T	A	2.736e^-4	0.753	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	1094500	2R_1094500_SNP [dm3] 2R_5206995_SNP [dm6]	T	G	2.739e^-4	0.753	INTRON Nipped-A	transposable element FlyBase
2R	20480822	2R_20480822_SNP [dm3] 2R_24593299_SNP [dm6]	T	C	2.742e^-4	0.753	DOWNSTREAM pio INTRON pio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	14361245	3R_14361245_SNP [dm3] 3R_18535523_SNP [dm6]	A	T	2.748e^-4	0.753	INTRON fru
2R	11267012	2R_11267012_SNP [dm3] 2R_15379507_SNP [dm6]	C	A	2.749e^-4	0.753	INTRON dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6051808	2R_6051808_SNP [dm3] 2R_10164303_SNP [dm6]	G	T	2.759e^-4	0.753	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
X	2251245	X_2251245_SNP [dm3] X_2357212_SNP [dm6]	C	A	2.765e^-4	0.753	INTRON ptr	TF binding site BDTNP1_TFBS_da
3L	14205797	3L_14205797_SNP [dm3] 3L_14212697_SNP [dm6]	A	T	2.773e^-4	0.753	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	22020382	2L_22020382_SNP [dm3] 2L_22020382_SNP [dm6]	G	T	2.786e^-4	0.753	DOWNSTREAM CR33987 INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18271537	3L_18271537_SNP [dm3] 3L_18278437_SNP [dm6]	T	C	2.789e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	9395959	3R_9395959_SNP [dm3] 3R_13570237_SNP [dm6]	A	G	2.790e^-4	0.753	INTERGENIC
3R	14555312	3R_14555312_SNP [dm3] 3R_18729590_SNP [dm6]	T	A	2.792e^-4	0.753	INTRON Cha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5282268	2L_5282268_SNP [dm3] 2L_5282268_SNP [dm6]	G	A	2.795e^-4	0.753	SYNONYMOUS_CODING Bub1	TF binding site mE1_TFBS_cad
2R	8121633	2R_8121633_SNP [dm3] 2R_12234128_SNP [dm6]	C	G	2.796e^-4	0.753	EXON CR44313
3L	16128398	3L_16128398_SNP [dm3] 3L_16135298_SNP [dm6]	G	C	2.797e^-4	0.753	SYNONYMOUS_CODING CG16838
2R	10745587	2R_10745587_SNP [dm3] 2R_14858082_SNP [dm6]	T	C	2.800e^-4	0.753	SYNONYMOUS_CODING CG33506 DOWNSTREAM HPS1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	3674446	3L_3674446_SNP [dm3] 3L_3674446_SNP [dm6]	T	A	2.806e^-4	0.753	INTERGENIC
3R	25462676	3R_25462676_SNP [dm3] 3R_29636954_SNP [dm6]	G	A	2.807e^-4	0.753	INTRON Dop1R2
X	14211525	X_14211525_SNP [dm3] X_14317492_SNP [dm6]	G	C	2.807e^-4	0.753	UPSTREAM betaNACtes6 INTERGENIC
2L	11452018	2L_11452018_SNP [dm3] 2L_11452018_SNP [dm6]	G	A	2.811e^-4	0.753	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15173165	2R_15173165_DEL [dm3] 2R_19285660_DEL [dm6]	CGGA	C	2.813e^-4	0.753	UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2L	12985851	2L_12985851_SNP [dm3] 2L_12985851_SNP [dm6]	A	T	2.815e^-4	0.753	INTERGENIC
2R	8121885	2R_8121885_SNP [dm3] 2R_12234380_SNP [dm6]	G	A	2.829e^-4	0.753	EXON CR44313
3R	21232782	3R_21232782_SNP [dm3] 3R_25407060_SNP [dm6]	A	C	2.833e^-4	0.753	INTRON Fur1
3R	24713553	3R_24713553_SNP [dm3] 3R_28887831_SNP [dm6]	G	A	2.841e^-4	0.753	UPSTREAM Doa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	15217735	X_15217735_SNP [dm3] X_15323702_SNP [dm6]	A	G	2.843e^-4	0.753	SYNONYMOUS_CODING Top1 INTRON Top1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24652690	3R_24652690_SNP [dm3] 3R_28826968_SNP [dm6]	A	G	2.847e^-4	0.753	SYNONYMOUS_CODING WASp
3R	26847312	3R_26847312_SNP [dm3] 3R_31021590_SNP [dm6]	C	A	2.857e^-4	0.753	INTERGENIC
2R	8116285	2R_8116285_DEL [dm3] 2R_12228780_DEL [dm6]	GT	G	2.864e^-4	0.753	INTRON CG8854
2L	19897691	2L_19897691_SNP [dm3] 2L_19897691_SNP [dm6]	G	C	2.867e^-4	0.753	INTRON sick
2L	7061212	2L_7061212_SNP [dm3] 2L_7061212_SNP [dm6]	G	C	2.871e^-4	0.753	NON_SYNONYMOUS_CODING Mnn1 UPSTREAM CG31907
2L	21112848	2L_21112848_SNP [dm3] 2L_21112848_SNP [dm6]	A	T	2.875e^-4	0.753	INTRON Nhe2
2L	12397532	2L_12397532_INS [dm3] 2L_12397532_INS [dm6]	T	TGTAA	2.885e^-4	0.753	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
2R	15173102	2R_15173102_DEL [dm3] 2R_19285597_DEL [dm6]	TTCGGAAGGAG...	T	2.887e^-4	0.753	FRAME_SHIFT CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173114	2R_15173114_DEL [dm3] 2R_19285609_DEL [dm6]	TTTCTC	T	2.887e^-4	0.753	FRAME_SHIFT CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173125	2R_15173125_SNP [dm3] 2R_19285620_SNP [dm6]	T	A	2.887e^-4	0.753	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173128	2R_15173128_DEL [dm3] 2R_19285623_DEL [dm6]	CTGA	C	2.887e^-4	0.753	CODON_DELETION CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173135	2R_15173135_SNP [dm3] 2R_19285630_SNP [dm6]	C	A	2.887e^-4	0.753	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173137	2R_15173137_SNP [dm3] 2R_19285632_SNP [dm6]	C	G	2.887e^-4	0.753	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173139	2R_15173139_SNP [dm3] 2R_19285634_SNP [dm6]	A	T	2.887e^-4	0.753	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173141	2R_15173141_SNP [dm3] 2R_19285636_SNP [dm6]	C	G	2.887e^-4	0.753	SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173145	2R_15173145_DEL [dm3] 2R_19285640_DEL [dm6]	TCCGTGC	G	2.887e^-4	0.753	UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173154	2R_15173154_SNP [dm3] 2R_19285649_SNP [dm6]	A	T	2.887e^-4	0.753	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173156	2R_15173156_SNP [dm3] 2R_19285651_SNP [dm6]	C	T	2.887e^-4	0.753	SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173159	2R_15173159_SNP [dm3] 2R_19285654_SNP [dm6]	T	A	2.887e^-4	0.753	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15173164	2R_15173164_SNP [dm3] 2R_19285659_SNP [dm6]	C	G	2.887e^-4	0.753	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	15174184	2R_15174184_SNP [dm3] 2R_19286679_SNP [dm6]	A	G	2.887e^-4	0.753	INTRON CG10474	TF binding site mE1_TFBS_cad
2R	15174186	2R_15174186_DEL [dm3] 2R_19286681_DEL [dm6]	TTC	T	2.887e^-4	0.753	INTRON CG10474	TF binding site mE1_TFBS_cad
2R	15174219	2R_15174219_DEL [dm3] 2R_19286714_DEL [dm6]	AG	A	2.887e^-4	0.753	UTR_5_PRIME CG10474	TF binding site mE1_TFBS_cad
2R	15174224	2R_15174224_SNP [dm3] 2R_19286719_SNP [dm6]	T	C	2.887e^-4	0.753	START_GAINED CG10474 UTR_5_PRIME CG10474	TF binding site mE1_TFBS_cad
2R	15174225	2R_15174225_DEL [dm3] 2R_19286720_DEL [dm6]	AATGC	A	2.887e^-4	0.753	UTR_5_PRIME CG10474	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15174238	2R_15174238_MNP [dm3] 2R_19286733_MNP [dm6]	GGA	TAT	2.887e^-4	0.753	UPSTREAM CG10474 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15174245	2R_15174245_MNP [dm3] 2R_19286740_MNP [dm6]	TGC	CTT	2.887e^-4	0.753	UPSTREAM CG10474 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15174249	2R_15174249_DEL [dm3] 2R_19286744_DEL [dm6]	AG	A	2.887e^-4	0.753	UPSTREAM CG10474 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15174252	2R_15174252_DEL [dm3] 2R_19286747_DEL [dm6]	CCCGCAA	C	2.887e^-4	0.753	UPSTREAM CG10474 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15173134	2R_15173134_SNP [dm3] 2R_19285629_SNP [dm6]	A	G	2.890e^-4	0.753	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2R	12805159	2R_12805159_INS [dm3] 2R_16917654_INS [dm6]	C	CC	2.890e^-4	0.753	INTERGENIC
2L	1663233	2L_1663233_DEL [dm3] 2L_1663233_DEL [dm6]	TC	T	2.895e^-4	0.753	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5923908	3R_5923908_SNP [dm3] 3R_10098186_SNP [dm6]	C	T	2.896e^-4	0.753	EXON CR43459
2R	17968374	2R_17968374_SNP [dm3] 2R_22080869_SNP [dm6]	T	A	2.899e^-4	0.753	INTRON Synj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10730805	2L_10730805_SNP [dm3] 2L_10730805_SNP [dm6]	G	C	2.917e^-4	0.757	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1452779	2L_1452779_DEL [dm3] 2L_1452779_DEL [dm6]	CC	C	2.930e^-4	0.758	INTERGENIC
3L	18211456	3L_18211456_SNP [dm3] 3L_18218356_SNP [dm6]	A	G	2.935e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11093822	2L_11093822_SNP [dm3] 2L_11093822_SNP [dm6]	G	A	2.935e^-4	0.758	SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17105635	2R_17105635_INS [dm3] 2R_21218130_INS [dm6]	T	TATATGTGTGTGT...	2.942e^-4	0.759	UTR_3_PRIME ASPP UPSTREAM CG15661
2L	14915287	2L_14915287_SNP [dm3] 2L_14915287_SNP [dm6]	G	T	2.959e^-4	0.76	INTRON CG42313
2L	8504057	2L_8504057_SNP [dm3] 2L_8504057_SNP [dm6]	G	A	2.963e^-4	0.76	INTRON Dh31
2R	18223013	2R_18223013_SNP [dm3] 2R_22335508_SNP [dm6]	C	G	2.965e^-4	0.76	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	8118741	2R_8118741_SNP [dm3] 2R_12231236_SNP [dm6]	T	C	2.968e^-4	0.76	INTERGENIC
X	6879975	X_6879975_SNP [dm3] X_6985942_SNP [dm6]	A	G	2.970e^-4	0.76	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	8706874	2R_8706874_SNP [dm3] 2R_12819369_SNP [dm6]	T	C	2.972e^-4	0.76	INTERGENIC
2R	18576660	2R_18576660_SNP [dm3] 2R_22689155_SNP [dm6]	G	C	2.978e^-4	0.76	UPSTREAM CR44763 & 1 other EXON CR44762	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8092572	2R_8092572_SNP [dm3] 2R_12205067_SNP [dm6]	C	T	2.980e^-4	0.76	INTERGENIC
2L	14677122	2L_14677122_SNP [dm3] 2L_14677122_SNP [dm6]	C	T	2.981e^-4	0.76	INTRON osp
2L	13842794	2L_13842794_SNP [dm3] 2L_13842794_SNP [dm6]	C	T	2.985e^-4	0.76	DOWNSTREAM CG33306 INTRON CenG1A
2L	7058141	2L_7058141_SNP [dm3] 2L_7058141_SNP [dm6]	G	A	2.991e^-4	0.76	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	14978970	2L_14978970_SNP [dm3] 2L_14978970_SNP [dm6]	A	C	2.995e^-4	0.76	INTRON mol
2L	11209417	2L_11209417_SNP [dm3] 2L_11209417_SNP [dm6]	C	T	3.002e^-4	0.761	INTERGENIC	silencer mE1_HDAC_PRE
2L	21775117	2L_21775117_SNP [dm3] 2L_21775117_SNP [dm6]	T	C	3.017e^-4	0.764	SYNONYMOUS_CODING CG31612	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	1277447	X_1277447_SNP [dm3] X_1383414_SNP [dm6]	G	A	3.027e^-4	0.764	INTRON CG32813	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	5024966	2R_5024966_SNP [dm3] 2R_9137461_SNP [dm6]	C	T	3.027e^-4	0.764	NON_SYNONYMOUS_CODING alc UPSTREAM alc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	3852781	3R_3852781_SNP [dm3] 3R_8027059_SNP [dm6]	A	G	3.031e^-4	0.764	UTR_5_PRIME CG2747 INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26742638	3R_26742638_SNP [dm3] 3R_30916916_SNP [dm6]	G	C	3.033e^-4	0.764	INTRON Ptx1
X	2757730	X_2757730_SNP [dm3] X_2863697_SNP [dm6]	T	A	3.042e^-4	0.764	INTRON kirre
3R	26847352	3R_26847352_SNP [dm3] 3R_31021630_SNP [dm6]	C	T	3.042e^-4	0.764	INTERGENIC
3R	12325612	3R_12325612_SNP [dm3] 3R_16499890_SNP [dm6]	T	G	3.060e^-4	0.764	SYNONYMOUS_CODING decay UPSTREAM Gr89a
3R	16696437	3R_16696437_SNP [dm3] 3R_20870715_SNP [dm6]	G	A	3.060e^-4	0.764	UPSTREAM TotA INTERGENIC
2L	14677396	2L_14677396_SNP [dm3] 2L_14677396_SNP [dm6]	G	A	3.065e^-4	0.764	INTRON osp
3R	10382447	3R_10382447_SNP [dm3] 3R_14556725_SNP [dm6]	T	A	3.065e^-4	0.764	UPSTREAM Pde6 INTRON Pde6
2L	12962568	2L_12962568_SNP [dm3] 2L_12962568_SNP [dm6]	T	C	3.067e^-4	0.764	INTERGENIC
2L	11448221	2L_11448221_SNP [dm3] 2L_11448221_SNP [dm6]	A	C	3.068e^-4	0.764	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9328579	3L_9328579_SNP [dm3] 3L_9335479_SNP [dm6]	C	G	3.080e^-4	0.764	UPSTREAM PGRP-LA INTRON PGRP-LA
3R	17028716	3R_17028716_SNP [dm3] 3R_21202994_SNP [dm6]	T	G	3.091e^-4	0.764	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25675208	3R_25675208_SNP [dm3] 3R_29849486_SNP [dm6]	T	A	3.096e^-4	0.764	INTRON Cad99C	TF binding site mE1_TFBS_cad
2L	11448829	2L_11448829_SNP [dm3] 2L_11448829_SNP [dm6]	G	A	3.099e^-4	0.764	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2R	11975923	2R_11975923_SNP [dm3] 2R_16088418_SNP [dm6]	C	A	3.103e^-4	0.764	INTRON Dg
2R	18720451	2R_18720451_SNP [dm3] 2R_22832928_SNP [dm6]	T	A	3.106e^-4	0.764	NON_SYNONYMOUS_CODING CG30265
2L	10001994	2L_10001994_DEL [dm3] 2L_10001994_DEL [dm6]	AT	A	3.111e^-4	0.764	INTRON CG31875 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	3902512	2L_3902512_INS [dm3] 2L_3902512_INS [dm6]	T	TG	3.112e^-4	0.764	DOWNSTREAM fred INTRON capu
3R	19442442	3R_19442442_SNP [dm3] 3R_23616720_SNP [dm6]	T	C	3.116e^-4	0.764	INTRON CG31145
2R	11804847	2R_11804847_DEL [dm3] 2R_15917342_DEL [dm6]	AAA	C	3.122e^-4	0.764	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
X	2733660	X_2733660_DEL [dm3] X_2839627_DEL [dm6]	AA	C	3.122e^-4	0.764	INTRON kirre
2L	12951599	2L_12951599_SNP [dm3] 2L_12951599_SNP [dm6]	A	G	3.131e^-4	0.764	INTERGENIC
2L	11244648	2L_11244648_SNP [dm3] 2L_11244648_SNP [dm6]	T	A	3.141e^-4	0.764	INTRON ab	TF binding site BDTNP1_TFBS_twi
2R	8120586	2R_8120586_SNP [dm3] 2R_12233081_SNP [dm6]	G	A	3.148e^-4	0.764	DOWNSTREAM CR44313 INTERGENIC
2R	17968434	2R_17968434_SNP [dm3] 2R_22080929_SNP [dm6]	G	T	3.153e^-4	0.764	INTRON Synj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20913826	3R_20913826_SNP [dm3] 3R_25088104_SNP [dm6]	A	T	3.164e^-4	0.764	INTERGENIC
2R	9587699	2R_9587699_SNP [dm3] 2R_13700194_SNP [dm6]	G	T	3.165e^-4	0.764	INTRON fas
2R	9127467	2R_9127467_INS [dm3] 2R_13239962_INS [dm6]	G	GGATTTGCTCGA...	3.166e^-4	0.764	UPSTREAM CG4679 INTRON GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10152946	2R_10152946_SNP [dm3] 2R_14265441_SNP [dm6]	G	T	3.168e^-4	0.764	INTRON CG8547
X	11903661	X_11903661_SNP [dm3] X_12009628_SNP [dm6]	C	T	3.175e^-4	0.764	DOWNSTREAM CG1492 INTRON CG1806
X	8736718	X_8736718_INS [dm3] X_8842685_INS [dm6]	A	AAG	3.176e^-4	0.764	INTRON CG12075
2L	11469070	2L_11469070_SNP [dm3] 2L_11469070_SNP [dm6]	T	C	3.178e^-4	0.764	INTERGENIC
3R	16899416	3R_16899416_SNP [dm3] 3R_21073694_SNP [dm6]	C	A	3.193e^-4	0.764	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10212238	X_10212238_SNP [dm3] X_10318205_SNP [dm6]	C	T	3.195e^-4	0.764	INTRON alpha-Man-I
3L	5706094	3L_5706094_SNP [dm3] 3L_5712994_SNP [dm6]	G	A	3.197e^-4	0.764	UPSTREAM CG44521 INTRON sif
X	8561264	X_8561264_SNP [dm3] X_8667231_SNP [dm6]	A	C	3.198e^-4	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	7002254	2L_7002254_SNP [dm3] 2L_7002254_SNP [dm6]	C	A	3.214e^-4	0.764	INTRON uif
2L	5596273	2L_5596273_SNP [dm3] 2L_5596273_SNP [dm6]	C	A	3.215e^-4	0.764	UPSTREAM CG18266 INTERGENIC
3L	5423850	3L_5423850_SNP [dm3] 3L_5430750_SNP [dm6]	G	A	3.229e^-4	0.764	INTRON CG34391
2R	8092306	2R_8092306_SNP [dm3] 2R_12204801_SNP [dm6]	C	T	3.236e^-4	0.764	INTERGENIC
2R	6165350	2R_6165350_SNP [dm3] 2R_10277845_SNP [dm6]	A	G	3.246e^-4	0.764	UPSTREAM CAP INTRON CAP
3R	21583729	3R_21583729_SNP [dm3] 3R_25758007_SNP [dm6]	G	A	3.247e^-4	0.764	INTRON LpR1
3R	19990357	3R_19990357_SNP [dm3] 3R_24164635_SNP [dm6]	A	T	3.251e^-4	0.764	SYNONYMOUS_CODING Apc2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	17094139	2R_17094139_INS [dm3] 2R_21206634_INS [dm6]	T	TGAG	3.258e^-4	0.764	INTRON CG44245 & 1 other
3R	20697082	3R_20697082_SNP [dm3] 3R_24871360_SNP [dm6]	T	A	3.264e^-4	0.764	UTR_3_PRIME CG3744 UPSTREAM CycB3 DOWNSTREAM CG3744	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9663453	2L_9663453_DEL [dm3] 2L_9663453_DEL [dm6]	CC	C	3.275e^-4	0.764	INTERGENIC
2L	22035999	2L_22035999_SNP [dm3] 2L_22035999_SNP [dm6]	G	T	3.278e^-4	0.764	INTERGENIC
3R	24710771	3R_24710771_SNP [dm3] 3R_28885049_SNP [dm6]	C	T	3.280e^-4	0.764	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5859381	3R_5859381_SNP [dm3] 3R_10033659_SNP [dm6]	G	T	3.286e^-4	0.764	INTRON Mical
2L	15202871	2L_15202871_SNP [dm3] 2L_15202871_SNP [dm6]	C	G	3.287e^-4	0.764	UPSTREAM Sfp35C INTRON CR43357
3L	3638870	3L_3638870_DEL [dm3] 3L_3638870_DEL [dm6]	TC	T	3.299e^-4	0.764	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7570101	2R_7570101_SNP [dm3] 2R_11682596_SNP [dm6]	T	G	3.303e^-4	0.764	INTRON Buffy
X	11072409	X_11072409_SNP [dm3] X_11178376_SNP [dm6]	T	A	3.303e^-4	0.764	INTERGENIC
X	14501871	X_14501871_SNP [dm3] X_14607838_SNP [dm6]	T	C	3.305e^-4	0.764	INTRON NetA	TF binding site BDTNP1_TFBS_twi
3L	5628678	3L_5628678_SNP [dm3] 3L_5635578_SNP [dm6]	C	T	3.308e^-4	0.764	UPSTREAM Blimp-1 INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15290609	2R_15290609_SNP [dm3] 2R_19403104_SNP [dm6]	G	A	3.311e^-4	0.764	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19317734	3R_19317734_DEL [dm3] 3R_23492012_DEL [dm6]	AA	A	3.314e^-4	0.764	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17237405	2R_17237405_SNP [dm3] 2R_21349900_SNP [dm6]	T	A	3.315e^-4	0.764	INTRON CG17974
2L	4478083	2L_4478083_SNP [dm3] 2L_4478083_SNP [dm6]	T	C	3.317e^-4	0.764	UTR_3_PRIME dp
2L	11442420	2L_11442420_SNP [dm3] 2L_11442420_SNP [dm6]	T	C	3.317e^-4	0.764	INTRON salm
3R	24842497	3R_24842497_SNP [dm3] 3R_29016775_SNP [dm6]	A	T	3.320e^-4	0.764	INTRON wat
2R	12083814	2R_12083814_SNP [dm3] 2R_16196309_SNP [dm6]	A	G	3.321e^-4	0.764	UTR_5_PRIME calypso UPSTREAM CG44242 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	10752907	2L_10752907_SNP [dm3] 2L_10752907_SNP [dm6]	A	T	3.322e^-4	0.764	INTRON CG17124	TF binding site mE1_TFBS_cad
2R	12078105	2R_12078105_SNP [dm3] 2R_16190600_SNP [dm6]	T	C	3.331e^-4	0.764	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1479171	2L_1479171_SNP [dm3] 2L_1479171_SNP [dm6]	C	T	3.337e^-4	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7789093	3R_7789093_SNP [dm3] 3R_11963371_SNP [dm6]	A	T	3.344e^-4	0.764	NON_SYNONYMOUS_CODING aur UPSTREAM CG3281	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	13596624	3L_13596624_SNP [dm3] 3L_13603524_SNP [dm6]	A	G	3.348e^-4	0.764	INTRON bru-3
2R	7806991	2R_7806991_SNP [dm3] 2R_11919486_SNP [dm6]	A	T	3.356e^-4	0.764	DOWNSTREAM CR44305 INTERGENIC
2R	14762800	2R_14762800_SNP [dm3] 2R_18875295_SNP [dm6]	G	T	3.362e^-4	0.764	INTERGENIC
2R	10745476	2R_10745476_SNP [dm3] 2R_14857971_SNP [dm6]	A	G	3.364e^-4	0.764	SYNONYMOUS_CODING CG33506 DOWNSTREAM HPS1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16361964	3L_16361964_SNP [dm3] 3L_16368864_SNP [dm6]	C	T	3.365e^-4	0.764	UPSTREAM CG18814 INTRON CG4842
2R	3840529	2R_3840529_SNP [dm3] 2R_7953024_SNP [dm6]	A	C	3.365e^-4	0.764	INTRON CG14764
2L	11458556	2L_11458556_SNP [dm3] 2L_11458556_SNP [dm6]	A	C	3.366e^-4	0.764	INTERGENIC
2R	11612175	2R_11612175_SNP [dm3] 2R_15724670_SNP [dm6]	T	C	3.370e^-4	0.764	INTERGENIC
3L	459802	3L_459802_SNP [dm3] 3L_459802_SNP [dm6]	C	A	3.387e^-4	0.764	INTRON klar
3L	3993354	3L_3993354_SNP [dm3] 3L_3993354_SNP [dm6]	T	A	3.394e^-4	0.764	UTR_3_PRIME scrt
2L	6815599	2L_6815599_SNP [dm3] 2L_6815599_SNP [dm6]	C	T	3.400e^-4	0.764	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9109752	2R_9109752_SNP [dm3] 2R_13222247_SNP [dm6]	C	T	3.401e^-4	0.764	UTR_5_PRIME Fsn UPSTREAM Dp INTRON Fsn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	3567628	2L_3567628_SNP [dm3] 2L_3567628_SNP [dm6]	G	T	3.402e^-4	0.764	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13600637	2R_13600637_SNP [dm3] 2R_17713132_SNP [dm6]	C	G	3.405e^-4	0.764	INTRON CG6424	TF binding site mE1_TFBS_sbb
3R	24484998	3R_24484998_SNP [dm3] 3R_28659276_SNP [dm6]	C	T	3.410e^-4	0.764	INTERGENIC
3R	6539922	3R_6539922_SNP [dm3] 3R_10714200_SNP [dm6]	T	C	3.411e^-4	0.764	UPSTREAM CG4073 INTERGENIC
2R	8287393	2R_8287393_SNP [dm3] 2R_12399888_SNP [dm6]	G	C	3.414e^-4	0.764	DOWNSTREAM CG30048 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5933432	3R_5933432_SNP [dm3] 3R_10107710_SNP [dm6]	T	G	3.419e^-4	0.764	INTRON Fmr1	TF binding site BDTNP1_TFBS_da
2L	11454220	2L_11454220_SNP [dm3] 2L_11454220_SNP [dm6]	T	G	3.420e^-4	0.764	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	10130203	3R_10130203_SNP [dm3] 3R_14304481_SNP [dm6]	T	A	3.422e^-4	0.764	UTR_3_PRIME su_Hw_ DOWNSTREAM CG3259	TF binding site mE1_TFBS_cad
2L	17601977	2L_17601977_SNP [dm3] 2L_17601977_SNP [dm6]	T	C	3.427e^-4	0.764	SYNONYMOUS_CODING Sytalpha
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	3.434e^-4	0.764	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	3964831	3L_3964831_SNP [dm3] 3L_3964831_SNP [dm6]	G	A	3.436e^-4	0.764	UPSTREAM CG12605 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9663171	2L_9663171_SNP [dm3] 2L_9663171_SNP [dm6]	A	G	3.436e^-4	0.764	INTERGENIC
3L	447904	3L_447904_SNP [dm3] 3L_447904_SNP [dm6]	T	A	3.438e^-4	0.764	UTR_5_PRIME klar INTRON klar	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	6914080	X_6914080_INS [dm3] X_7020047_INS [dm6]	A	AA	3.444e^-4	0.764	INTERGENIC
3R	10371039	3R_10371039_SNP [dm3] 3R_14545317_SNP [dm6]	C	G	3.445e^-4	0.764	INTRON Pde6
2R	8964418	2R_8964418_SNP [dm3] 2R_13076913_SNP [dm6]	G	A	3.448e^-4	0.764	INTRON Drl-2
2L	15109496	2L_15109496_SNP [dm3] 2L_15109496_SNP [dm6]	A	C	3.455e^-4	0.764	UTR_5_PRIME CG15269	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5688496	3L_5688496_SNP [dm3] 3L_5695396_SNP [dm6]	C	T	3.461e^-4	0.764	INTRON sif
2R	16476471	2R_16476471_SNP [dm3] 2R_20588966_SNP [dm6]	T	A	3.463e^-4	0.764	INTRON bl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	14876233	3R_14876233_SNP [dm3] 3R_19050511_SNP [dm6]	C	T	3.469e^-4	0.764	INTRON cdi
X	13606673	X_13606673_SNP [dm3] X_13712640_SNP [dm6]	G	T	3.475e^-4	0.764	SYNONYMOUS_CODING NnaD INTRON CG9940
X	6879827	X_6879827_SNP [dm3] X_6985794_SNP [dm6]	G	A	3.483e^-4	0.764	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	26389895	3R_26389895_SNP [dm3] 3R_30564173_SNP [dm6]	T	A	3.496e^-4	0.764	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	20489343	3R_20489343_SNP [dm3] 3R_24663621_SNP [dm6]	G	A	3.497e^-4	0.764	INTRON slo	regulatory region REDfly_CRMs
2R	15320630	2R_15320630_SNP [dm3] 2R_19433125_SNP [dm6]	G	A	3.499e^-4	0.764	NON_SYNONYMOUS_CODING Fak INTRON Fak	TF binding site mE1_TFBS_inv
3L	13596814	3L_13596814_SNP [dm3] 3L_13603714_SNP [dm6]	C	G	3.503e^-4	0.764	INTRON bru-3
2L	11468201	2L_11468201_SNP [dm3] 2L_11468201_SNP [dm6]	C	T	3.504e^-4	0.764	INTERGENIC
3L	17591611	3L_17591611_SNP [dm3] 3L_17598511_SNP [dm6]	A	C	3.509e^-4	0.764	INTRON Eip74EF	TF binding site mE1_TFBS_cad
2R	8174465	2R_8174465_SNP [dm3] 2R_12286960_SNP [dm6]	G	T	3.514e^-4	0.764	INTRON CG42700
2R	9582999	2R_9582999_SNP [dm3] 2R_13695494_SNP [dm6]	A	G	3.516e^-4	0.764	INTRON fas
2L	22022061	2L_22022061_SNP [dm3] 2L_22022061_SNP [dm6]	T	A	3.517e^-4	0.764	NON_SYNONYMOUS_CODING tio	TF binding site mE1_TFBS_cad
3R	13071435	3R_13071435_SNP [dm3] 3R_17245713_SNP [dm6]	T	C	3.517e^-4	0.764	INTRON beat-IIb
3R	23859189	3R_23859189_SNP [dm3] 3R_28033467_SNP [dm6]	A	T	3.523e^-4	0.764	INTRON CG34362
2L	11454158	2L_11454158_SNP [dm3] 2L_11454158_SNP [dm6]	C	A	3.532e^-4	0.764	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	16975611	3L_16975611_SNP [dm3] 3L_16982511_SNP [dm6]	G	C	3.536e^-4	0.764	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
2L	21687547	2L_21687547_SNP [dm3] 2L_21687547_SNP [dm6]	T	C	3.539e^-4	0.764	INTRON CG31619
3L	7090440	3L_7090440_SNP [dm3] 3L_7097340_SNP [dm6]	G	C	3.542e^-4	0.764	INTRON form3
3L	10552548	3L_10552548_INS [dm3] 3L_10559448_INS [dm6]	A	ATACACACGAGCACACA...	3.551e^-4	0.764	UPSTREAM CG6527 INTRON A2bp1
3R	7763244	3R_7763244_SNP [dm3] 3R_11937522_SNP [dm6]	G	A	3.554e^-4	0.764	INTRON Cad87A
3L	20166096	3L_20166096_SNP [dm3] 3L_20172996_SNP [dm6]	G	C	3.561e^-4	0.764	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
2R	15324032	2R_15324032_SNP [dm3] 2R_19436527_SNP [dm6]	G	T	3.562e^-4	0.764	UPSTREAM Spt5 INTRON Fak	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8148264	2R_8148264_SNP [dm3] 2R_12260759_SNP [dm6]	A	G	3.564e^-4	0.764	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	3354774	2R_3354774_SNP [dm3] 2R_7467269_SNP [dm6]	A	G	3.566e^-4	0.764	UTR_3_PRIME Aldh-III UPSTREAM p47 INTRON Aldh-III	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7939212	2R_7939212_SNP [dm3] 2R_12051707_SNP [dm6]	C	G	3.568e^-4	0.764	UTR_5_PRIME CG30039
3L	459803	3L_459803_SNP [dm3] 3L_459803_SNP [dm6]	G	C	3.571e^-4	0.764	INTRON klar
X	11744592	X_11744592_SNP [dm3] X_11850559_SNP [dm6]	A	G	3.575e^-4	0.764	UPSTREAM CR45619 DOWNSTREAM p24-1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	7789088	3R_7789088_SNP [dm3] 3R_11963366_SNP [dm6]	A	C	3.575e^-4	0.764	SYNONYMOUS_CODING aur UPSTREAM CG3281	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	16410182	3R_16410182_INS [dm3] 3R_20584460_INS [dm6]	T	TAGT	3.585e^-4	0.764	INTRON CG16953
3L	11061097	3L_11061097_SNP [dm3] 3L_11067997_SNP [dm6]	G	A	3.586e^-4	0.764	NON_SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
2R	8102309	2R_8102309_INS [dm3] 2R_12214804_INS [dm6]	G	GAGTG	3.588e^-4	0.764	DOWNSTREAM CG13171 INTERGENIC
2L	8525349	2L_8525349_SNP [dm3] 2L_8525349_SNP [dm6]	C	T	3.593e^-4	0.764	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	6755529	2L_6755529_SNP [dm3] 2L_6755529_SNP [dm6]	C	T	3.597e^-4	0.764	UTR_3_PRIME CG11221 DOWNSTREAM CG11221
3R	21232866	3R_21232866_SNP [dm3] 3R_25407144_SNP [dm6]	C	A	3.608e^-4	0.764	INTRON Fur1
2R	14411436	2R_14411436_SNP [dm3] 2R_18523931_SNP [dm6]	C	T	3.609e^-4	0.764	INTRON CG43066
2R	8175790	2R_8175790_SNP [dm3] 2R_12288285_SNP [dm6]	A	T	3.617e^-4	0.764	INTRON CG42700
2L	11442663	2L_11442663_SNP [dm3] 2L_11442663_SNP [dm6]	A	T	3.627e^-4	0.764	INTRON salm
2R	10170106	2R_10170106_SNP [dm3] 2R_14282601_SNP [dm6]	T	C	3.641e^-4	0.764	INTRON Ih
3L	4881977	3L_4881977_SNP [dm3] 3L_4881977_SNP [dm6]	C	G	3.642e^-4	0.764	INTRON CG17150
3L	1596009	3L_1596009_SNP [dm3] 3L_1596009_SNP [dm6]	C	T	3.643e^-4	0.764	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1665287	2L_1665287_SNP [dm3] 2L_1665287_SNP [dm6]	A	C	3.644e^-4	0.764	INTRON chinmo
2L	13746686	2L_13746686_SNP [dm3] 2L_13746686_SNP [dm6]	A	T	3.648e^-4	0.764	UPSTREAM TM9SF4 & 1 other DOWNSTREAM mir-1002 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11061133	3L_11061133_SNP [dm3] 3L_11068033_SNP [dm6]	C	T	3.649e^-4	0.764	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
3R	3853824	3R_3853824_SNP [dm3] 3R_8028102_SNP [dm6]	C	T	3.662e^-4	0.764	UPSTREAM CG2747 DOWNSTREAM ImpE3 INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	7803609	X_7803609_DEL [dm3] X_7909576_DEL [dm6]	CGGAAACGGGGTCGATTC...	C	3.665e^-4	0.764	INTRON CG1444	TF binding site BDTNP1_TFBS_dl
3R	14472478	3R_14472478_SNP [dm3] 3R_18646756_SNP [dm6]	C	T	3.665e^-4	0.764	SYNONYMOUS_CODING qin
2L	15471059	2L_15471059_INS [dm3] 2L_15471059_INS [dm6]	C	CC	3.666e^-4	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	1457444	3L_1457444_SNP [dm3] 3L_1457444_SNP [dm6]	C	T	3.677e^-4	0.764	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	7384283	2R_7384283_SNP [dm3] 2R_11496778_SNP [dm6]	C	A	3.680e^-4	0.764	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6418369	2L_6418369_SNP [dm3] 2L_6418369_SNP [dm6]	C	T	3.685e^-4	0.764	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_chinmo
X	7803563	X_7803563_SNP [dm3] X_7909530_SNP [dm6]	G	A	3.691e^-4	0.764	SYNONYMOUS_CODING CG1444	TF binding site BDTNP1_TFBS_dl
3L	456405	3L_456405_SNP [dm3] 3L_456405_SNP [dm6]	T	G	3.696e^-4	0.764	INTRON klar
X	10210232	X_10210232_SNP [dm3] X_10316199_SNP [dm6]	G	T	3.696e^-4	0.764	INTRON alpha-Man-I
3R	18302266	3R_18302266_SNP [dm3] 3R_22476544_SNP [dm6]	G	A	3.698e^-4	0.764	INTRON Nrx-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15412667	2L_15412667_SNP [dm3] 2L_15412667_SNP [dm6]	C	T	3.699e^-4	0.764	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5493764	2L_5493764_SNP [dm3] 2L_5493764_SNP [dm6]	A	G	3.702e^-4	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	20377480	X_20377480_SNP [dm3] X_20506453_SNP [dm6]	C	T	3.704e^-4	0.764	INTRON RhoGAP19D
2L	1638698	2L_1638698_SNP [dm3] 2L_1638698_SNP [dm6]	C	T	3.708e^-4	0.764	INTERGENIC
3L	2657723	3L_2657723_SNP [dm3] 3L_2657723_SNP [dm6]	T	A	3.708e^-4	0.764	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
2L	15651017	2L_15651017_SNP [dm3] 2L_15651017_SNP [dm6]	G	C	3.712e^-4	0.764	INTRON CG4587
2L	9875797	2L_9875797_SNP [dm3] 2L_9875797_SNP [dm6]	T	A	3.714e^-4	0.764	INTRON nAChRalpha6	TF binding site mE1_TFBS_inv
2L	16084287	2L_16084287_SNP [dm3] 2L_16084287_SNP [dm6]	A	G	3.717e^-4	0.764	INTERGENIC
2R	12083642	2R_12083642_SNP [dm3] 2R_16196137_SNP [dm6]	T	G	3.721e^-4	0.764	UTR_5_PRIME calypso UPSTREAM CG44242 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9064408	3L_9064408_SNP [dm3] 3L_9071308_SNP [dm6]	C	T	3.725e^-4	0.764	SYNONYMOUS_CODING CG4911	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18385947	2L_18385947_SNP [dm3] 2L_18385947_SNP [dm6]	A	C	3.726e^-4	0.764	INTRON Fas3
3R	23810295	3R_23810295_SNP [dm3] 3R_27984573_SNP [dm6]	G	C	3.731e^-4	0.764	INTRON betaTub97EF
X	10211199	X_10211199_SNP [dm3] X_10317166_SNP [dm6]	C	T	3.732e^-4	0.764	INTRON alpha-Man-I
2R	10745512	2R_10745512_SNP [dm3] 2R_14858007_SNP [dm6]	T	C	3.737e^-4	0.764	SYNONYMOUS_CODING CG33506 DOWNSTREAM HPS1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6879337	X_6879337_SNP [dm3] X_6985304_SNP [dm6]	G	A	3.742e^-4	0.764	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14453764	3R_14453764_SNP [dm3] 3R_18628042_SNP [dm6]	C	T	3.749e^-4	0.764	DOWNSTREAM tRNA:CR31228 INTRON qin	TF binding site BDTNP1_TFBS_twi
2R	12083655	2R_12083655_SNP [dm3] 2R_16196150_SNP [dm6]	T	C	3.757e^-4	0.764	START_GAINED calypso UTR_5_PRIME calypso UPSTREAM CG44242 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	7801534	3R_7801534_SNP [dm3] 3R_11975812_SNP [dm6]	C	G	3.758e^-4	0.764	UPSTREAM Tango9 INTRON CG10005	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	6822298	3R_6822298_SNP [dm3] 3R_10996576_SNP [dm6]	C	T	3.769e^-4	0.764	INTRON CG34114
3L	9101841	3L_9101841_DEL [dm3] 3L_9108741_DEL [dm6]	CTCG	AAA	3.770e^-4	0.764	INTRON bol
2L	11471896	2L_11471896_SNP [dm3] 2L_11471896_SNP [dm6]	G	C	3.785e^-4	0.764	INTERGENIC	TF binding site mE1_TFBS_cad
X	10209865	X_10209865_SNP [dm3] X_10315832_SNP [dm6]	T	C	3.787e^-4	0.764	INTRON alpha-Man-I
2R	12083540	2R_12083540_SNP [dm3] 2R_16196035_SNP [dm6]	T	G	3.788e^-4	0.764	UPSTREAM CG44242 INTRON calypso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2L	19995930	2L_19995930_SNP [dm3] 2L_19995930_SNP [dm6]	G	A	3.804e^-4	0.764	INTRON CG43861
3R	20489370	3R_20489370_SNP [dm3] 3R_24663648_SNP [dm6]	G	T	3.805e^-4	0.764	INTRON slo	regulatory region REDfly_CRMs
X	5923064	X_5923064_SNP [dm3] X_6029031_SNP [dm6]	A	G	3.811e^-4	0.764	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10435550	X_10435550_SNP [dm3] X_10541517_SNP [dm6]	A	C	3.815e^-4	0.764	INTRON spri
2L	12806925	2L_12806925_SNP [dm3] 2L_12806925_SNP [dm6]	T	G	3.824e^-4	0.764	DOWNSTREAM CR43818 INTERGENIC
2L	8525348	2L_8525348_SNP [dm3] 2L_8525348_SNP [dm6]	T	A	3.825e^-4	0.764	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3R	24702319	3R_24702319_SNP [dm3] 3R_28876597_SNP [dm6]	G	A	3.836e^-4	0.764	NON_SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo
3R	24702337	3R_24702337_SNP [dm3] 3R_28876615_SNP [dm6]	G	A	3.836e^-4	0.764	NON_SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo
3L	5361750	3L_5361750_SNP [dm3] 3L_5368650_SNP [dm6]	G	A	3.845e^-4	0.764	UPSTREAM CG10635 & 1 other INTERGENIC
2R	11784222	2R_11784222_INS [dm3] 2R_15896717_INS [dm6]	A	AA	3.851e^-4	0.764	UPSTREAM CG33463 INTRON sli	TF binding site mE1_TFBS_cad
2R	7081709	2R_7081709_SNP [dm3] 2R_11194204_SNP [dm6]	T	A	3.854e^-4	0.764	INTRON shn	TF binding site BDTNP1_TFBS_dl
3L	9582465	3L_9582465_SNP [dm3] 3L_9589365_SNP [dm6]	A	T	3.858e^-4	0.764	INTRON CG42673
2R	11807485	2R_11807485_INS [dm3] 2R_15919980_INS [dm6]	T	TATATAAGGAAT...	3.863e^-4	0.764	INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2636649	2R_2636649_SNP [dm3] 2R_6749144_SNP [dm6]	A	T	3.866e^-4	0.764	UPSTREAM Eb1 DOWNSTREAM CG3267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2R	12805711	2R_12805711_SNP [dm3] 2R_16918206_SNP [dm6]	C	T	3.867e^-4	0.764	INTERGENIC
X	2607497	X_2607497_SNP [dm3] X_2713464_SNP [dm6]	C	G	3.876e^-4	0.764	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16067006	2L_16067006_SNP [dm3] 2L_16067006_SNP [dm6]	C	T	3.876e^-4	0.764	INTRON beat-Ia
3R	13019301	3R_13019301_SNP [dm3] 3R_17193579_SNP [dm6]	G	C	3.877e^-4	0.764	INTRON Mur89F
2L	11472482	2L_11472482_SNP [dm3] 2L_11472482_SNP [dm6]	A	G	3.884e^-4	0.764	INTERGENIC	TF binding site mE1_TFBS_cad
X	6773500	X_6773500_SNP [dm3] X_6879467_SNP [dm6]	G	A	3.885e^-4	0.764	SYNONYMOUS_CODING CG43736 UTR_3_PRIME CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3567641	2L_3567641_SNP [dm3] 2L_3567641_SNP [dm6]	T	A	3.886e^-4	0.764	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	20697611	2L_20697611_SNP [dm3] 2L_20697611_SNP [dm6]	A	G	3.898e^-4	0.764	INTRON Hr38
2L	3500830	2L_3500830_SNP [dm3] 2L_3500830_SNP [dm6]	G	T	3.901e^-4	0.764	DOWNSTREAM tim INTRON tim
2R	8175795	2R_8175795_SNP [dm3] 2R_12288290_SNP [dm6]	C	G	3.901e^-4	0.764	INTRON CG42700
2L	1665293	2L_1665293_SNP [dm3] 2L_1665293_SNP [dm6]	C	T	3.902e^-4	0.764	INTRON chinmo
2L	21973984	2L_21973984_SNP [dm3] 2L_21973984_SNP [dm6]	T	G	3.909e^-4	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9582380	3L_9582380_SNP [dm3] 3L_9589280_SNP [dm6]	A	G	3.909e^-4	0.764	INTRON CG42673
2L	11429907	2L_11429907_SNP [dm3] 2L_11429907_SNP [dm6]	A	G	3.920e^-4	0.764	INTERGENIC
3R	9041794	3R_9041794_SNP [dm3] 3R_13216072_SNP [dm6]	C	T	3.924e^-4	0.764	INTERGENIC
2L	9365052	2L_9365052_SNP [dm3] 2L_9365052_SNP [dm6]	T	G	3.925e^-4	0.764	DOWNSTREAM CR43404 INTERGENIC
3R	13998110	3R_13998110_SNP [dm3] 3R_18172388_SNP [dm6]	T	C	3.933e^-4	0.764	UPSTREAM PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	10296493	3R_10296493_SNP [dm3] 3R_14470771_SNP [dm6]	C	A	3.939e^-4	0.764	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9695205	3R_9695205_SNP [dm3] 3R_13869483_SNP [dm6]	A	T	3.947e^-4	0.764	INTRON E5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11455144	2L_11455144_SNP [dm3] 2L_11455144_SNP [dm6]	A	G	3.948e^-4	0.764	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7104715	2R_7104715_SNP [dm3] 2R_11217210_SNP [dm6]	T	A	3.956e^-4	0.764	UTR_3_PRIME shn DOWNSTREAM CG9084
2L	10733577	2L_10733577_SNP [dm3] 2L_10733577_SNP [dm6]	A	G	3.962e^-4	0.764	SYNONYMOUS_CODING Nup107 DOWNSTREAM Dpy-30L1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8172504	2R_8172504_SNP [dm3] 2R_12284999_SNP [dm6]	T	A	3.976e^-4	0.764	INTRON CG42700
3R	14443197	3R_14443197_SNP [dm3] 3R_18617475_SNP [dm6]	A	T	3.976e^-4	0.764	SYNONYMOUS_CODING CG7695 INTRON qin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13089873	3L_13089873_SNP [dm3] 3L_13096773_SNP [dm6]	A	G	3.980e^-4	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12198303	3L_12198303_SNP [dm3] 3L_12205203_SNP [dm6]	A	G	3.985e^-4	0.764	SYNONYMOUS_CODING CG5626
2L	6815601	2L_6815601_SNP [dm3] 2L_6815601_SNP [dm6]	A	T	3.987e^-4	0.764	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23417726	3R_23417726_SNP [dm3] 3R_27592004_SNP [dm6]	A	C	3.991e^-4	0.764	INTRON CG5639
2R	8145150	2R_8145150_SNP [dm3] 2R_12257645_SNP [dm6]	G	A	3.999e^-4	0.764	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
2L	21750968	2L_21750968_SNP [dm3] 2L_21750968_SNP [dm6]	G	A	4.000e^-4	0.764	INTRON step
2L	16715132	2L_16715132_SNP [dm3] 2L_16715132_SNP [dm6]	G	A	4.001e^-4	0.764	UPSTREAM Cyt-c-d INTRON CG31808
3R	7735135	3R_7735135_DEL [dm3] 3R_11909413_DEL [dm6]	CACCCGATAATTTCCCTTCG...	C	4.003e^-4	0.764	INTRON Cad87A	TF binding site mE1_TFBS_HSA
2R	9581659	2R_9581659_SNP [dm3] 2R_13694154_SNP [dm6]	T	A	4.005e^-4	0.764	UPSTREAM CG6220 INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17270161	3L_17270161_SNP [dm3] 3L_17277061_SNP [dm6]	T	A	4.006e^-4	0.764	INTERGENIC
2L	1449433	2L_1449433_SNP [dm3] 2L_1449433_SNP [dm6]	C	T	4.015e^-4	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8288244	X_8288244_SNP [dm3] X_8394211_SNP [dm6]	A	C	4.020e^-4	0.764	INTERGENIC
3L	7544208	3L_7544208_SNP [dm3] 3L_7551108_SNP [dm6]	T	C	4.030e^-4	0.764	INTERGENIC
3L	12184935	3L_12184935_SNP [dm3] 3L_12191835_SNP [dm6]	T	A	4.032e^-4	0.764	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
3R	11593866	3R_11593866_SNP [dm3] 3R_15768144_SNP [dm6]	C	T	4.038e^-4	0.764	UPSTREAM CG5623 INTERGENIC
2R	8118730	2R_8118730_SNP [dm3] 2R_12231225_SNP [dm6]	T	A	4.048e^-4	0.764	INTERGENIC
2R	8092783	2R_8092783_SNP [dm3] 2R_12205278_SNP [dm6]	G	T	4.049e^-4	0.764	UPSTREAM CR45276 INTERGENIC
3L	3647465	3L_3647465_SNP [dm3] 3L_3647465_SNP [dm6]	A	T	4.049e^-4	0.764	INTRON dar1	TF binding site mE1_TFBS_chinmo
2R	8145258	2R_8145258_SNP [dm3] 2R_12257753_SNP [dm6]	A	G	4.051e^-4	0.764	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
2L	2958416	2L_2958416_SNP [dm3] 2L_2958416_SNP [dm6]	G	T	4.054e^-4	0.764	UPSTREAM Rbp9 INTRON Rbp9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6484018	X_6484018_SNP [dm3] X_6589985_SNP [dm6]	G	A	4.057e^-4	0.764	UPSTREAM Pat1 DOWNSTREAM CG34417 INTRON CG17717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18149642	3R_18149642_SNP [dm3] 3R_22323920_SNP [dm6]	T	G	4.061e^-4	0.764	UTR_5_PRIME CG34377
3L	19095902	3L_19095902_SNP [dm3] 3L_19102802_SNP [dm6]	T	C	4.062e^-4	0.764	INTERGENIC
2R	8116279	2R_8116279_SNP [dm3] 2R_12228774_SNP [dm6]	T	C	4.062e^-4	0.764	INTRON CG8854
2L	5769391	2L_5769391_SNP [dm3] 2L_5769391_SNP [dm6]	T	C	4.063e^-4	0.764	SYNONYMOUS_CODING CG9171 UPSTREAM CR31912	TF binding site mE1_TFBS_cad
2R	20053130	2R_20053130_SNP [dm3] 2R_24165607_SNP [dm6]	A	G	4.079e^-4	0.764	INTRON CG3328
3L	9195663	3L_9195663_SNP [dm3] 3L_9202563_SNP [dm6]	A	T	4.081e^-4	0.764	DOWNSTREAM Slc45-1 INTERGENIC
2R	8148270	2R_8148270_SNP [dm3] 2R_12260765_SNP [dm6]	A	G	4.089e^-4	0.764	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	5134159	3L_5134159_SNP [dm3] 3L_5141059_SNP [dm6]	A	G	4.090e^-4	0.764	SYNONYMOUS_CODING CG10672 UPSTREAM CG4623 DOWNSTREAM CHMP2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	19967154	3R_19967154_SNP [dm3] 3R_24141432_SNP [dm6]	A	G	4.094e^-4	0.764	UTR_5_PRIME Kal1 DOWNSTREAM Npc2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3210288	2R_3210288_SNP [dm3] 2R_7322783_SNP [dm6]	A	G	4.097e^-4	0.764	SYNONYMOUS_CODING Dscam1	TF binding site mE1_TFBS_HSA
2R	14158551	2R_14158551_INS [dm3] 2R_18271046_INS [dm6]	T	TGTTG	4.098e^-4	0.764	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14677304	2L_14677304_INS [dm3] 2L_14677304_INS [dm6]	T	TCAAAAGATCTATTAGGT...	4.101e^-4	0.764	INTRON osp
3R	5866038	3R_5866038_SNP [dm3] 3R_10040316_SNP [dm6]	T	C	4.103e^-4	0.764	INTRON Mical
2R	8964903	2R_8964903_SNP [dm3] 2R_13077398_SNP [dm6]	A	G	4.105e^-4	0.764	INTRON Drl-2	TF binding site mE1_TFBS_cad
2L	4294765	2L_4294765_SNP [dm3] 2L_4294765_SNP [dm6]	G	A	4.108e^-4	0.764	INTRON tutl	TF binding site mE1_TFBS_chinmo
2L	6847890	2L_6847890_SNP [dm3] 2L_6847890_SNP [dm6]	C	T	4.110e^-4	0.764	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	5717555	2L_5717555_SNP [dm3] 2L_5717555_SNP [dm6]	C	T	4.111e^-4	0.764	SYNONYMOUS_CODING CG34011 UPSTREAM CG14007 DOWNSTREAM CG11149
3R	6474667	3R_6474667_SNP [dm3] 3R_10648945_SNP [dm6]	G	T	4.114e^-4	0.764	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	5654095	2L_5654095_SNP [dm3] 2L_5654095_SNP [dm6]	G	C	4.115e^-4	0.764	INTRON CG31646
3R	25107932	3R_25107932_SNP [dm3] 3R_29282210_SNP [dm6]	T	C	4.119e^-4	0.764	INTERGENIC	regulatory region REDfly_CRMs
3L	11822642	3L_11822642_SNP [dm3] 3L_11829542_SNP [dm6]	C	A	4.124e^-4	0.764	SYNONYMOUS_CODING CG7264 INTRON CycA
3L	10348745	3L_10348745_SNP [dm3] 3L_10355645_SNP [dm6]	C	T	4.126e^-4	0.764	INTRON CR44327
2L	16330043	2L_16330043_SNP [dm3] 2L_16330043_SNP [dm6]	A	T	4.127e^-4	0.764	UPSTREAM mRpL4 DOWNSTREAM CG31817 INTRON CG4440	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1628335	2L_1628335_SNP [dm3] 2L_1628335_SNP [dm6]	C	G	4.133e^-4	0.764	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.014e^-21)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.06277

Kruskal-Wallis test

Covariate	χ²	p-value
wolba	5.6901	0.0171
In_3R_P	4.9703	0.0833
In_3R_K	13.4131	0.0012

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2049 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	14189504	3L_14189504_SNP [dm3] 3L_14196404_SNP [dm6]	A	T	1.480e^-7	0.082	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	3698108	3R_3698108_SNP [dm3] 3R_7872386_SNP [dm6]	A	C	1.520e^-7	0.082	INTRON CG17816
2L	15458494	2L_15458494_SNP [dm3] 2L_15458494_SNP [dm6]	G	T	2.015e^-7	0.082	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15458161	2L_15458161_SNP [dm3] 2L_15458161_SNP [dm6]	A	T	2.229e^-7	0.082	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12443070	2R_12443070_SNP [dm3] 2R_16555565_SNP [dm6]	T	A	2.287e^-7	0.082	INTRON Syn2
2L	15458164	2L_15458164_SNP [dm3] 2L_15458164_SNP [dm6]	T	G	3.126e^-7	0.082	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	3698102	3R_3698102_SNP [dm3] 3R_7872380_SNP [dm6]	G	A	3.374e^-7	0.082	INTRON CG17816
2L	15458230	2L_15458230_SNP [dm3] 2L_15458230_SNP [dm6]	G	C	3.852e^-7	0.082	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11438928	2R_11438928_SNP [dm3] 2R_15551423_SNP [dm6]	G	C	3.938e^-7	0.082	INTERGENIC
3L	14189503	3L_14189503_SNP [dm3] 3L_14196403_SNP [dm6]	G	A	4.558e^-7	0.085	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	13023226	2R_13023226_SNP [dm3] 2R_17135721_SNP [dm6]	A	G	5.035e^-7	0.086	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
2L	15458384	2L_15458384_SNP [dm3] 2L_15458384_SNP [dm6]	T	C	6.070e^-7	0.095	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15458068	2L_15458068_SNP [dm3] 2L_15458068_SNP [dm6]	T	G	6.921e^-7	0.1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	15458124	2L_15458124_SNP [dm3] 2L_15458124_SNP [dm6]	T	A	9.322e^-7	0.125	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11736299	2R_11736299_DEL [dm3] 2R_15848794_DEL [dm6]	CGCCGTGATACAAGCTCC...	C	2.108e^-6	0.264	UTR_5_PRIME tun
2L	15457689	2L_15457689_SNP [dm3] 2L_15457689_SNP [dm6]	T	C	2.873e^-6	0.319	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	8261742	3L_8261742_SNP [dm3] 3L_8268642_SNP [dm6]	G	T	2.992e^-6	0.319	INTRON Dscam4
2R	6914114	2R_6914114_DEL [dm3] 2R_11026609_DEL [dm6]	TC	T	3.063e^-6	0.319	INTRON luna
3R	3698149	3R_3698149_SNP [dm3] 3R_7872427_SNP [dm6]	T	C	3.626e^-6	0.358	INTRON CG17816
3R	3698160	3R_3698160_SNP [dm3] 3R_7872438_SNP [dm6]	G	A	3.949e^-6	0.366	INTRON CG17816
3R	2306995	3R_2306995_SNP [dm3] 3R_6481273_SNP [dm6]	T	C	4.096e^-6	0.366	INTRON CG15186
2L	1235477	2L_1235477_SNP [dm3] 2L_1235477_SNP [dm6]	C	T	4.310e^-6	0.367	INTERGENIC
2R	13549434	2R_13549434_SNP [dm3] 2R_17661929_SNP [dm6]	T	C	5.470e^-6	0.446	INTRON CCHa1-R
2R	13920139	2R_13920139_SNP [dm3] 2R_18032634_SNP [dm6]	A	G	5.950e^-6	0.465	INTERGENIC
3R	2788954	3R_2788954_DEL [dm3] 3R_6963232_DEL [dm6]	GG	G	6.646e^-6	0.489	INTRON Antp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16396695	3R_16396695_SNP [dm3] 3R_20570973_SNP [dm6]	G	A	6.772e^-6	0.489	INTRON CG5191
3R	22216662	3R_22216662_SNP [dm3] 3R_26390940_SNP [dm6]	G	A	8.011e^-6	0.557	INTERGENIC
2L	1238393	2L_1238393_SNP [dm3] 2L_1238393_SNP [dm6]	G	C	9.112e^-6	0.596	INTERGENIC
2R	3775699	2R_3775699_SNP [dm3] 2R_7888194_SNP [dm6]	A	G	9.209e^-6	0.596	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1278326	2L_1278326_SNP [dm3] 2L_1278326_SNP [dm6]	A	G	9.573e^-6	0.599	INTRON robo3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1253848	3L_1253848_SNP [dm3] 3L_1253848_SNP [dm6]	T	A	1.048e^-5	0.608	UPSTREAM CG9133 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19174958	X_19174958_SNP [dm3] X_19280925_SNP [dm6]	C	T	1.072e^-5	0.608	UPSTREAM CG8028 DOWNSTREAM CG8034 INTERGENIC
2L	3788627	2L_3788627_SNP [dm3] 2L_3788627_SNP [dm6]	T	C	1.138e^-5	0.608	INTRON CG3921
2R	6916972	2R_6916972_SNP [dm3] 2R_11029467_SNP [dm6]	C	G	1.171e^-5	0.608	INTRON luna	TF binding site mE1_TFBS_chinmo
2L	10194938	2L_10194938_SNP [dm3] 2L_10194938_SNP [dm6]	C	G	1.186e^-5	0.608	SYNONYMOUS_CODING Sur
2L	1235435	2L_1235435_SNP [dm3] 2L_1235435_SNP [dm6]	C	G	1.190e^-5	0.608	INTERGENIC
2R	13920115	2R_13920115_SNP [dm3] 2R_18032610_SNP [dm6]	T	A	1.200e^-5	0.608	INTERGENIC
3R	17736170	3R_17736170_SNP [dm3] 3R_21910448_SNP [dm6]	C	G	1.404e^-5	0.63	INTERGENIC
2R	12621142	2R_12621142_SNP [dm3] 2R_16733637_SNP [dm6]	C	T	1.405e^-5	0.63	UPSTREAM CG30463 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8909866	2R_8909866_SNP [dm3] 2R_13022361_SNP [dm6]	G	T	1.425e^-5	0.63	INTERGENIC
2R	11267739	2R_11267739_SNP [dm3] 2R_15380234_SNP [dm6]	T	G	1.435e^-5	0.63	UPSTREAM SRPK INTRON dup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14762741	2R_14762741_SNP [dm3] 2R_18875236_SNP [dm6]	A	T	1.442e^-5	0.63	INTERGENIC
3L	9400175	3L_9400175_SNP [dm3] 3L_9407075_SNP [dm6]	C	T	1.445e^-5	0.63	UTR_3_PRIME CG4022 DOWNSTREAM Cpr67B & 1 other
2R	13549424	2R_13549424_DEL [dm3] 2R_17661919_DEL [dm6]	ACAATA	A	1.482e^-5	0.632	INTRON CCHa1-R
2R	11281183	2R_11281183_SNP [dm3] 2R_15393678_SNP [dm6]	C	T	1.592e^-5	0.657	INTERGENIC
2R	16172851	2R_16172851_SNP [dm3] 2R_20285346_SNP [dm6]	C	T	1.642e^-5	0.657	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
2R	12032080	2R_12032080_SNP [dm3] 2R_16144575_SNP [dm6]	T	C	1.647e^-5	0.657	SYNONYMOUS_CODING Aats-cys
2R	6915014	2R_6915014_SNP [dm3] 2R_11027509_SNP [dm6]	C	A	1.704e^-5	0.657	INTRON luna
2L	15454552	2L_15454552_SNP [dm3] 2L_15454552_SNP [dm6]	A	G	1.715e^-5	0.657	INTERGENIC	TF binding site mE1_TFBS_cad
X	3976117	X_3976117_INS [dm3] X_4082084_INS [dm6]	A	ATGAAGTACTTTAATTTA...	1.775e^-5	0.661	INTRON CG43689
2R	16172875	2R_16172875_SNP [dm3] 2R_20285370_SNP [dm6]	A	G	1.798e^-5	0.661	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
X	20343022	X_20343022_SNP [dm3] X_20471995_SNP [dm6]	T	C	1.989e^-5	0.665	UTR_3_PRIME RhoGAP19D	TF binding site mE1_TFBS_cad
2R	13919968	2R_13919968_SNP [dm3] 2R_18032463_SNP [dm6]	G	A	2.028e^-5	0.665	INTERGENIC
2R	13919973	2R_13919973_SNP [dm3] 2R_18032468_SNP [dm6]	G	A	2.028e^-5	0.665	INTERGENIC
3R	3698224	3R_3698224_SNP [dm3] 3R_7872502_SNP [dm6]	A	C	2.034e^-5	0.665	INTRON CG17816
3L	8261751	3L_8261751_SNP [dm3] 3L_8268651_SNP [dm6]	A	T	2.078e^-5	0.665	INTRON Dscam4
2R	6915005	2R_6915005_SNP [dm3] 2R_11027500_SNP [dm6]	C	T	2.115e^-5	0.665	INTRON luna
2R	16062350	2R_16062350_SNP [dm3] 2R_20174845_SNP [dm6]	T	C	2.118e^-5	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1235419	2L_1235419_SNP [dm3] 2L_1235419_SNP [dm6]	C	G	2.183e^-5	0.665	INTERGENIC
2R	12774793	2R_12774793_SNP [dm3] 2R_16887288_SNP [dm6]	G	A	2.197e^-5	0.665	INTRON CG8910
2L	2935910	2L_2935910_SNP [dm3] 2L_2935910_SNP [dm6]	C	G	2.248e^-5	0.665	INTRON lilli
3L	12186539	3L_12186539_SNP [dm3] 3L_12193439_SNP [dm6]	C	T	2.416e^-5	0.665	SPLICE_SITE_REGION thoc6 DOWNSTREAM Est-P INTRON thoc6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
3R	15478423	3R_15478423_SNP [dm3] 3R_19652701_SNP [dm6]	A	G	2.467e^-5	0.665	SYNONYMOUS_CODING CG6184 DOWNSTREAM CG31219	TF binding site mE1_TFBS_chinmo
2R	14698626	2R_14698626_SNP [dm3] 2R_18811121_SNP [dm6]	A	G	2.511e^-5	0.665	INTRON CG15096
2R	13850050	2R_13850050_SNP [dm3] 2R_17962545_SNP [dm6]	A	T	2.608e^-5	0.665	INTERGENIC
2R	17604959	2R_17604959_SNP [dm3] 2R_21717454_SNP [dm6]	G	A	2.628e^-5	0.665	SYNONYMOUS_CODING Tango11 UPSTREAM CG30398 DOWNSTREAM HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3776245	2R_3776245_SNP [dm3] 2R_7888740_SNP [dm6]	A	G	2.654e^-5	0.665	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1292169	2L_1292169_SNP [dm3] 2L_1292169_SNP [dm6]	A	T	2.672e^-5	0.665	INTRON robo3
2L	1557440	2L_1557440_SNP [dm3] 2L_1557440_SNP [dm6]	C	T	2.681e^-5	0.665	INTRON haf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3698404	3R_3698404_SNP [dm3] 3R_7872682_SNP [dm6]	A	G	2.695e^-5	0.665	INTRON CG17816
2L	4213596	2L_4213596_SNP [dm3] 2L_4213596_SNP [dm6]	T	G	2.704e^-5	0.665	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16396703	3R_16396703_SNP [dm3] 3R_20570981_SNP [dm6]	T	A	2.721e^-5	0.665	INTRON CG5191
2L	19388889	2L_19388889_SNP [dm3] 2L_19388889_SNP [dm6]	T	A	2.721e^-5	0.665	INTRON CG17549
3R	21009365	3R_21009365_SNP [dm3] 3R_25183643_SNP [dm6]	T	C	2.769e^-5	0.665	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	1318624	2R_1318624_SNP [dm3] 2R_5431119_SNP [dm6]	A	G	2.773e^-5	0.665	INTRON laccase2	transposable element FlyBase
2R	13512518	2R_13512518_SNP [dm3] 2R_17625013_SNP [dm6]	G	T	2.883e^-5	0.665	INTRON CG10936
2L	1344223	2L_1344223_SNP [dm3] 2L_1344223_SNP [dm6]	G	A	3.015e^-5	0.665	UPSTREAM Cdlc2 & 1 other INTERGENIC
2R	13160485	2R_13160485_SNP [dm3] 2R_17272980_SNP [dm6]	T	C	3.087e^-5	0.665	INTRON mbl
2R	3777346	2R_3777346_SNP [dm3] 2R_7889841_SNP [dm6]	C	T	3.112e^-5	0.665	UPSTREAM CG30377 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16396701	3R_16396701_SNP [dm3] 3R_20570979_SNP [dm6]	A	T	3.123e^-5	0.665	INTRON CG5191
2R	12031972	2R_12031972_SNP [dm3] 2R_16144467_SNP [dm6]	T	G	3.126e^-5	0.665	SYNONYMOUS_CODING Aats-cys
2L	20001530	2L_20001530_DEL [dm3] 2L_20001530_DEL [dm6]	ATAGACAA	A	3.148e^-5	0.665	INTRON CG43861
X	14825649	X_14825649_SNP [dm3] X_14931616_SNP [dm6]	C	T	3.177e^-5	0.665	INTRON Flo2
X	19923296	X_19923296_INS [dm3] X_20029263_INS [dm6]	C	CC	3.186e^-5	0.665	INTRON Dop2R
2L	15458192	2L_15458192_SNP [dm3] 2L_15458192_SNP [dm6]	C	T	3.211e^-5	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15458391	2L_15458391_DEL [dm3] 2L_15458391_DEL [dm6]	TTCACCCGCATT...	T	3.211e^-5	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	1318622	2R_1318622_SNP [dm3] 2R_5431117_SNP [dm6]	C	T	3.263e^-5	0.665	INTRON laccase2	transposable element FlyBase
2R	14219961	2R_14219961_SNP [dm3] 2R_18332456_SNP [dm6]	T	C	3.316e^-5	0.665	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3R	24864140	3R_24864140_SNP [dm3] 3R_29038418_SNP [dm6]	T	A	3.324e^-5	0.665	SYNONYMOUS_CODING Slu7 UPSTREAM Pkc98E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	11871447	2R_11871447_SNP [dm3] 2R_15983942_SNP [dm6]	T	C	3.343e^-5	0.665	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
2L	3297684	2L_3297684_SNP [dm3] 2L_3297684_SNP [dm6]	T	C	3.423e^-5	0.665	INTRON CG9663
X	8818178	X_8818178_SNP [dm3] X_8924145_SNP [dm6]	A	G	3.431e^-5	0.665	NON_SYNONYMOUS_CODING CG43255 UPSTREAM CG12661 INTRON rdgA	TF binding site BDTNP1_TFBS_dl
2R	14762800	2R_14762800_SNP [dm3] 2R_18875295_SNP [dm6]	G	T	3.433e^-5	0.665	INTERGENIC
2L	1207541	2L_1207541_SNP [dm3] 2L_1207541_SNP [dm6]	G	C	3.573e^-5	0.665	INTERGENIC
2R	11422037	2R_11422037_SNP [dm3] 2R_15534532_SNP [dm6]	G	A	3.591e^-5	0.665	INTRON CG30471
3L	12641244	3L_12641244_SNP [dm3] 3L_12648144_SNP [dm6]	G	A	3.630e^-5	0.665	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15458421	2L_15458421_SNP [dm3] 2L_15458421_SNP [dm6]	T	G	3.639e^-5	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1344206	2L_1344206_SNP [dm3] 2L_1344206_SNP [dm6]	A	T	3.653e^-5	0.665	UPSTREAM Cdlc2 & 1 other INTERGENIC
3R	25676438	3R_25676438_SNP [dm3] 3R_29850716_SNP [dm6]	T	G	3.676e^-5	0.665	SYNONYMOUS_CODING Cad99C	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10043838	3L_10043838_SNP [dm3] 3L_10050738_SNP [dm6]	C	T	3.679e^-5	0.665	INTRON dpr6
3L	12641247	3L_12641247_SNP [dm3] 3L_12648147_SNP [dm6]	A	C	3.706e^-5	0.665	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11266316	2R_11266316_SNP [dm3] 2R_15378811_SNP [dm6]	T	G	3.717e^-5	0.665	INTRON dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5385812	2L_5385812_SNP [dm3] 2L_5385812_SNP [dm6]	G	A	3.749e^-5	0.665	INTERGENIC
2R	13996704	2R_13996704_SNP [dm3] 2R_18109199_SNP [dm6]	A	T	3.788e^-5	0.665	UPSTREAM CG5756 & 1 other INTERGENIC
2R	14732877	2R_14732877_SNP [dm3] 2R_18845372_SNP [dm6]	C	A	3.819e^-5	0.665	INTRON CG15099
2R	9165054	2R_9165054_SNP [dm3] 2R_13277549_SNP [dm6]	G	A	3.836e^-5	0.665	NON_SYNONYMOUS_CODING Dh31-R
X	5110346	X_5110346_SNP [dm3] X_5216313_SNP [dm6]	T	C	3.839e^-5	0.665	INTRON CG15465 & 1 other
3L	14189444	3L_14189444_SNP [dm3] 3L_14196344_SNP [dm6]	A	G	3.852e^-5	0.665	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	3697466	3R_3697466_SNP [dm3] 3R_7871744_SNP [dm6]	T	A	3.865e^-5	0.665	INTRON CG17816
2R	17099727	2R_17099727_SNP [dm3] 2R_21212222_SNP [dm6]	T	C	3.936e^-5	0.669	SYNONYMOUS_CODING CG44245 DOWNSTREAM CG4302
3L	12641249	3L_12641249_SNP [dm3] 3L_12648149_SNP [dm6]	A	G	4.014e^-5	0.669	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	14401756	2L_14401756_SNP [dm3] 2L_14401756_SNP [dm6]	A	G	4.056e^-5	0.669	INTRON elB
3R	24864176	3R_24864176_SNP [dm3] 3R_29038454_SNP [dm6]	G	A	4.074e^-5	0.669	SYNONYMOUS_CODING Slu7 UPSTREAM Pkc98E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14189540	3L_14189540_SNP [dm3] 3L_14196440_SNP [dm6]	T	C	4.082e^-5	0.669	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	11277949	2R_11277949_SNP [dm3] 2R_15390444_SNP [dm6]	G	A	4.104e^-5	0.669	INTERGENIC
2L	5923627	2L_5923627_SNP [dm3] 2L_5923627_SNP [dm6]	G	T	4.185e^-5	0.673	UTR_5_PRIME CG9016 DOWNSTREAM bchs	TF binding site BDTNP1_TFBS_dl
3R	2788941	3R_2788941_SNP [dm3] 3R_6963219_SNP [dm6]	A	G	4.197e^-5	0.673	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	4.338e^-5	0.688	INTERGENIC
2L	3471015	2L_3471015_SNP [dm3] 2L_3471015_SNP [dm6]	G	A	4.364e^-5	0.688	NON_SYNONYMOUS_CODING CG31776
2R	13549387	2R_13549387_SNP [dm3] 2R_17661882_SNP [dm6]	C	A	4.482e^-5	0.695	INTRON CCHa1-R
3R	13466648	3R_13466648_SNP [dm3] 3R_17640926_SNP [dm6]	A	T	4.482e^-5	0.695	INTRON CG43175
3R	19866227	3R_19866227_SNP [dm3] 3R_24040505_SNP [dm6]	T	A	4.604e^-5	0.698	INTRON spas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4377705	2L_4377705_SNP [dm3] 2L_4377705_SNP [dm6]	A	G	4.607e^-5	0.698	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17465037	2R_17465037_SNP [dm3] 2R_21577532_SNP [dm6]	T	A	4.612e^-5	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12641238	3L_12641238_SNP [dm3] 3L_12648138_SNP [dm6]	T	G	4.657e^-5	0.699	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4611688	2L_4611688_SNP [dm3] 2L_4611688_SNP [dm6]	A	G	4.733e^-5	0.704	INTRON dp	TF binding site mE1_TFBS_kn
2L	10113760	2L_10113760_SNP [dm3] 2L_10113760_SNP [dm6]	G	A	4.764e^-5	0.704	INTRON CG44153 & 1 other
X	12261503	X_12261503_SNP [dm3] X_12367470_SNP [dm6]	A	G	4.857e^-5	0.712	INTERGENIC
2R	19452096	2R_19452096_SNP [dm3] 2R_23564573_SNP [dm6]	C	A	4.921e^-5	0.715	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16468478	2L_16468478_SNP [dm3] 2L_16468478_SNP [dm6]	C	G	5.018e^-5	0.724	INTRON dac
2R	19452105	2R_19452105_SNP [dm3] 2R_23564582_SNP [dm6]	C	G	5.107e^-5	0.73	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10156717	3L_10156717_SNP [dm3] 3L_10163617_SNP [dm6]	C	T	5.137e^-5	0.73	INTRON dpr10
2R	14216307	2R_14216307_SNP [dm3] 2R_18328802_SNP [dm6]	G	A	5.183e^-5	0.731	INTRON sbb
3R	3818137	3R_3818137_SNP [dm3] 3R_7992415_SNP [dm6]	G	C	5.280e^-5	0.736	INTRON CG2781
3L	10919179	3L_10919179_SNP [dm3] 3L_10926079_SNP [dm6]	G	A	5.354e^-5	0.736	INTERGENIC
2L	3299073	2L_3299073_DEL [dm3] 2L_3299073_DEL [dm6]	AA	A	5.371e^-5	0.736	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	12822916	2R_12822916_SNP [dm3] 2R_16935411_SNP [dm6]	G	A	5.452e^-5	0.736	INTRON Pkc53E
2R	12252148	2R_12252148_SNP [dm3] 2R_16364643_SNP [dm6]	C	T	5.454e^-5	0.736	UTR_5_PRIME CG15711 UPSTREAM CG15711
3R	3757049	3R_3757049_SNP [dm3] 3R_7931327_SNP [dm6]	A	G	5.457e^-5	0.736	UTR_3_PRIME dsx INTRON dsx
3R	13466657	3R_13466657_SNP [dm3] 3R_17640935_SNP [dm6]	C	T	5.538e^-5	0.742	INTRON CG43175
3L	12641282	3L_12641282_DEL [dm3] 3L_12648182_DEL [dm6]	TACTTACTTGTTACTTACAC...	T	5.639e^-5	0.749	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2L	15310964	2L_15310964_SNP [dm3] 2L_15310964_SNP [dm6]	C	T	5.686e^-5	0.749	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	3604765	2L_3604765_SNP [dm3] 2L_3604765_SNP [dm6]	A	G	5.731e^-5	0.749	UTR_3_PRIME odd	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	18943718	X_18943718_DEL [dm3] X_19049685_DEL [dm6]	CA	C	5.785e^-5	0.749	UPSTREAM Diedel3 INTERGENIC
3L	8889895	3L_8889895_SNP [dm3] 3L_8896795_SNP [dm6]	C	T	5.788e^-5	0.749	INTRON TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12641265	3L_12641265_SNP [dm3] 3L_12648165_SNP [dm6]	G	A	5.848e^-5	0.751	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	12071675	X_12071675_SNP [dm3] X_12177642_SNP [dm6]	A	G	5.911e^-5	0.751	SYNONYMOUS_CODING CG1924 INTRON Ten-a	TF binding site mE1_TFBS_HSA
3R	3796319	3R_3796319_SNP [dm3] 3R_7970597_SNP [dm6]	A	T	5.927e^-5	0.751	INTERGENIC
3R	20442007	3R_20442007_SNP [dm3] 3R_24616285_SNP [dm6]	C	T	6.027e^-5	0.759	NON_SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	38030	X_38030_SNP [dm3] X_141643_SNP [dm6]	T	G	6.093e^-5	0.76	UPSTREAM tyn INTRON CR45473 EXON CR45473
3R	24123448	3R_24123448_SNP [dm3] 3R_28297726_SNP [dm6]	C	A	6.132e^-5	0.76	INTERGENIC
2L	20956570	2L_20956570_SNP [dm3] 2L_20956570_SNP [dm6]	G	A	6.158e^-5	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8914240	3L_8914240_SNP [dm3] 3L_8921140_SNP [dm6]	G	A	6.329e^-5	0.767	INTRON Tsp66E
3R	23205284	3R_23205284_SNP [dm3] 3R_27379562_SNP [dm6]	T	C	6.337e^-5	0.767	UTR_3_PRIME side INTRON side
2R	14395559	2R_14395559_SNP [dm3] 2R_18508054_SNP [dm6]	A	T	6.340e^-5	0.767	INTERGENIC
2L	3297830	2L_3297830_SNP [dm3] 2L_3297830_SNP [dm6]	T	C	6.412e^-5	0.771	INTRON CG9663
2L	14401713	2L_14401713_SNP [dm3] 2L_14401713_SNP [dm6]	G	A	6.586e^-5	0.777	INTRON elB
2R	15365812	2R_15365812_SNP [dm3] 2R_19478307_SNP [dm6]	T	C	6.606e^-5	0.777	INTRON par-1
X	12421963	X_12421963_SNP [dm3] X_12527930_SNP [dm6]	T	A	6.645e^-5	0.777	INTRON CG43921
2R	15365823	2R_15365823_INS [dm3] 2R_19478318_INS [dm6]	A	AA	6.657e^-5	0.777	INTRON par-1
3R	14647754	3R_14647754_SNP [dm3] 3R_18822032_SNP [dm6]	G	C	6.668e^-5	0.777	INTRON CG18208
2R	14762835	2R_14762835_SNP [dm3] 2R_18875330_SNP [dm6]	T	A	6.768e^-5	0.778	INTERGENIC
2R	12803815	2R_12803815_SNP [dm3] 2R_16916310_SNP [dm6]	A	C	6.789e^-5	0.778	INTERGENIC
2L	3330341	2L_3330341_SNP [dm3] 2L_3330341_SNP [dm6]	T	G	6.806e^-5	0.778	UPSTREAM CG3285 DOWNSTREAM CG33282 INTERGENIC
2R	12243035	2R_12243035_SNP [dm3] 2R_16355530_SNP [dm6]	C	G	6.947e^-5	0.785	UPSTREAM CG30098 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14708199	2R_14708199_SNP [dm3] 2R_18820694_SNP [dm6]	C	T	6.981e^-5	0.785	SYNONYMOUS_CODING Phb2	TF binding site BDTNP1_TFBS_dl
2L	1234014	2L_1234014_SNP [dm3] 2L_1234014_SNP [dm6]	G	T	7.039e^-5	0.785	INTERGENIC
X	16628355	X_16628355_SNP [dm3] X_16734322_SNP [dm6]	T	A	7.041e^-5	0.785	UPSTREAM TwdlY INTRON CG9634
3L	8605800	3L_8605800_SNP [dm3] 3L_8612700_SNP [dm6]	C	A	7.163e^-5	0.785	INTRON CG6282
X	3230988	X_3230988_SNP [dm3] X_3336955_SNP [dm6]	G	C	7.163e^-5	0.785	INTRON CR44886 & 1 other
3L	5063325	3L_5063325_SNP [dm3] 3L_5063325_SNP [dm6]	T	C	7.184e^-5	0.785	INTRON Con
2L	14702456	2L_14702456_SNP [dm3] 2L_14702456_SNP [dm6]	A	T	7.224e^-5	0.785	INTERGENIC
2L	13751185	2L_13751185_SNP [dm3] 2L_13751185_SNP [dm6]	A	T	7.253e^-5	0.785	INTRON CR44846 & 1 other
3L	12641259	3L_12641259_INS [dm3] 3L_12648159_INS [dm6]	T	TGTT	7.334e^-5	0.785	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7515598	2L_7515598_SNP [dm3] 2L_7515598_SNP [dm6]	A	C	7.355e^-5	0.785	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2R	18565118	2R_18565118_SNP [dm3] 2R_22677613_SNP [dm6]	A	G	7.363e^-5	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6213471	2R_6213471_SNP [dm3] 2R_10325966_SNP [dm6]	G	C	7.573e^-5	0.802	INTRON CG42732
2L	11397836	2L_11397836_SNP [dm3] 2L_11397836_SNP [dm6]	T	C	7.665e^-5	0.805	INTERGENIC	regulatory region REDfly_CRMs
2L	6280084	2L_6280084_SNP [dm3] 2L_6280084_SNP [dm6]	A	G	7.709e^-5	0.805	INTRON Ddr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12421962	X_12421962_SNP [dm3] X_12527929_SNP [dm6]	G	C	7.739e^-5	0.805	INTRON CG43921
2R	12032098	2R_12032098_SNP [dm3] 2R_16144593_SNP [dm6]	T	A	7.797e^-5	0.805	SYNONYMOUS_CODING Aats-cys
2R	13878906	2R_13878906_SNP [dm3] 2R_17991401_SNP [dm6]	G	A	7.843e^-5	0.805	INTRON dpr13	TF binding site mE1_TFBS_chinmo
3L	2821934	3L_2821934_SNP [dm3] 3L_2821934_SNP [dm6]	A	G	7.885e^-5	0.805	UPSTREAM CG43444 INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10415541	3L_10415541_SNP [dm3] 3L_10422441_SNP [dm6]	A	G	7.898e^-5	0.805	INTERGENIC
3R	21009368	3R_21009368_SNP [dm3] 3R_25183646_SNP [dm6]	T	A	7.958e^-5	0.807	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	673722	3L_673722_SNP [dm3] 3L_673722_SNP [dm6]	C	T	8.133e^-5	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2L	3791180	2L_3791180_SNP [dm3] 2L_3791180_SNP [dm6]	T	C	8.366e^-5	0.832	INTRON CG3921
2R	11798822	2R_11798822_SNP [dm3] 2R_15911317_SNP [dm6]	C	T	8.393e^-5	0.832	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13350619	2R_13350619_SNP [dm3] 2R_17463114_SNP [dm6]	T	A	8.398e^-5	0.832	SYNONYMOUS_CODING CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	11022057	3L_11022057_SNP [dm3] 3L_11028957_SNP [dm6]	T	C	8.488e^-5	0.832	SYNONYMOUS_CODING CG32081
2L	1344207	2L_1344207_DEL [dm3] 2L_1344207_DEL [dm6]	AAATATT	A	8.493e^-5	0.832	UPSTREAM Cdlc2 & 1 other INTERGENIC
2R	14219986	2R_14219986_SNP [dm3] 2R_18332481_SNP [dm6]	C	T	8.521e^-5	0.832	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	2155351	3L_2155351_SNP [dm3] 3L_2155351_SNP [dm6]	C	T	8.619e^-5	0.834	NON_SYNONYMOUS_CODING CG15822 INTRON CG15822
2L	8884285	2L_8884285_SNP [dm3] 2L_8884285_SNP [dm6]	T	A	8.636e^-5	0.834	INTERGENIC
3L	11848993	3L_11848993_SNP [dm3] 3L_11855893_SNP [dm6]	T	A	8.710e^-5	0.834	INTRON CG44837
2R	17465040	2R_17465040_INS [dm3] 2R_21577535_INS [dm6]	A	AGC	8.729e^-5	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11870835	2R_11870835_SNP [dm3] 2R_15983330_SNP [dm6]	G	A	8.813e^-5	0.834	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
2R	12614600	2R_12614600_SNP [dm3] 2R_16727095_SNP [dm6]	G	A	8.882e^-5	0.834	INTRON CG30463	TF binding site mE1_TFBS_inv
X	2682430	X_2682430_INS [dm3] X_2788397_INS [dm6]	A	ATA	8.907e^-5	0.834	INTRON kirre & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14767180	2R_14767180_SNP [dm3] 2R_18879675_SNP [dm6]	A	C	8.963e^-5	0.834	INTRON sano
X	2682423	X_2682423_SNP [dm3] X_2788390_SNP [dm6]	C	A	8.966e^-5	0.834	INTRON kirre & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3471146	2L_3471146_SNP [dm3] 2L_3471146_SNP [dm6]	T	C	8.977e^-5	0.834	SYNONYMOUS_CODING CG31776
2L	19079662	2L_19079662_SNP [dm3] 2L_19079662_SNP [dm6]	G	C	9.074e^-5	0.838	UTR_3_PRIME Lim3 UPSTREAM CG10700	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12641267	3L_12641267_SNP [dm3] 3L_12648167_SNP [dm6]	T	G	9.206e^-5	0.839	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	8889273	3L_8889273_SNP [dm3] 3L_8896173_SNP [dm6]	G	A	9.218e^-5	0.839	SYNONYMOUS_CODING TrpA1	TF binding site mE1_TFBS_cad
3L	8889277	3L_8889277_SNP [dm3] 3L_8896177_SNP [dm6]	G	A	9.218e^-5	0.839	SYNONYMOUS_CODING TrpA1	TF binding site mE1_TFBS_cad
2L	3471080	2L_3471080_SNP [dm3] 2L_3471080_SNP [dm6]	A	T	9.285e^-5	0.841	SPLICE_SITE_REGION CG31776 INTRON CG31776
3L	4104373	3L_4104373_SNP [dm3] 3L_4104373_SNP [dm6]	C	T	9.425e^-5	0.841	SYNONYMOUS_CODING Fit1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	6652153	X_6652153_SNP [dm3] X_6758120_SNP [dm6]	A	G	9.481e^-5	0.841	DOWNSTREAM CR43496 INTRON CG14438	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	12866198	2R_12866198_SNP [dm3] 2R_16978693_SNP [dm6]	T	C	9.535e^-5	0.841	INTRON Cbp53E
2L	15863689	2L_15863689_INS [dm3] 2L_15863689_INS [dm6]	T	TA	9.575e^-5	0.841	DOWNSTREAM CR42791 INTERGENIC
2L	18551152	2L_18551152_DEL [dm3] 2L_18551152_DEL [dm6]	GT	G	9.593e^-5	0.841	INTRON Pde11
2L	8762346	2L_8762346_SNP [dm3] 2L_8762346_SNP [dm6]	T	C	9.595e^-5	0.841	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10919157	3L_10919157_SNP [dm3] 3L_10926057_SNP [dm6]	T	A	9.669e^-5	0.841	INTERGENIC
2L	7801656	2L_7801656_INS [dm3] 2L_7801656_INS [dm6]	T	TT	9.702e^-5	0.841	UTR_3_PRIME r2d2 DOWNSTREAM cdc14 & 1 other
2R	17465038	2R_17465038_SNP [dm3] 2R_21577533_SNP [dm6]	G	T	9.810e^-5	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4318164	3L_4318164_SNP [dm3] 3L_4318164_SNP [dm6]	C	T	9.840e^-5	0.841	SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA
2L	3294627	2L_3294627_SNP [dm3] 2L_3294627_SNP [dm6]	G	A	9.889e^-5	0.841	UTR_5_PRIME CG9664 DOWNSTREAM CG9663
3L	5022205	3L_5022205_SNP [dm3] 3L_5022205_SNP [dm6]	G	A	9.907e^-5	0.841	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3297809	2L_3297809_SNP [dm3] 2L_3297809_SNP [dm6]	T	C	9.964e^-5	0.841	INTRON CG9663
2L	15108633	2L_15108633_SNP [dm3] 2L_15108633_SNP [dm6]	T	A	1.004e^-4	0.841	UPSTREAM CG15269 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4734212	2L_4734212_SNP [dm3] 2L_4734212_SNP [dm6]	C	T	1.015e^-4	0.841	NON_SYNONYMOUS_CODING CG15631 DOWNSTREAM CG15630
2R	16123366	2R_16123366_SNP [dm3] 2R_20235861_SNP [dm6]	C	A	1.017e^-4	0.841	UTR_3_PRIME CG44625 UPSTREAM CG11099 DOWNSTREAM CG11044 & 1 other
3R	23499267	3R_23499267_SNP [dm3] 3R_27673545_SNP [dm6]	C	A	1.020e^-4	0.841	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24122705	3R_24122705_SNP [dm3] 3R_28296983_SNP [dm6]	G	A	1.022e^-4	0.841	INTERGENIC
2R	13333189	2R_13333189_SNP [dm3] 2R_17445684_SNP [dm6]	C	T	1.022e^-4	0.841	NON_SYNONYMOUS_CODING mthl4 SPLICE_SITE_REGION mthl4 UPSTREAM EDTP
3R	9986209	3R_9986209_SNP [dm3] 3R_14160487_SNP [dm6]	G	A	1.024e^-4	0.841	UPSTREAM CG31327 INTERGENIC
3L	9329565	3L_9329565_SNP [dm3] 3L_9336465_SNP [dm6]	G	T	1.024e^-4	0.841	INTRON PGRP-LA
X	12958324	X_12958324_SNP [dm3] X_13064291_SNP [dm6]	T	C	1.030e^-4	0.841	INTRON rad
2R	17315608	2R_17315608_SNP [dm3] 2R_21428103_SNP [dm6]	A	G	1.031e^-4	0.841	INTRON Sdc
2L	7911013	2L_7911013_SNP [dm3] 2L_7911013_SNP [dm6]	T	A	1.036e^-4	0.841	INTRON Snoo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13808845	2R_13808845_SNP [dm3] 2R_17921340_SNP [dm6]	A	C	1.043e^-4	0.843	INTRON Elk
3L	13712878	3L_13712878_SNP [dm3] 3L_13719778_SNP [dm6]	C	T	1.054e^-4	0.845	INTRON bru-3
2R	12910093	2R_12910093_SNP [dm3] 2R_17022588_SNP [dm6]	A	C	1.059e^-4	0.845	INTRON Ark	TF binding site mE1_TFBS_sens
2L	7507380	2L_7507380_SNP [dm3] 2L_7507380_SNP [dm6]	C	T	1.065e^-4	0.845	INTRON RapGAP1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	8567948	3L_8567948_SNP [dm3] 3L_8574848_SNP [dm6]	C	G	1.065e^-4	0.845	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11271749	2R_11271749_SNP [dm3] 2R_15384244_SNP [dm6]	T	A	1.067e^-4	0.845	NON_SYNONYMOUS_CODING SRPK
3L	12186364	3L_12186364_SNP [dm3] 3L_12193264_SNP [dm6]	G	A	1.081e^-4	0.849	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	20766616	3R_20766616_SNP [dm3] 3R_24940894_SNP [dm6]	A	C	1.083e^-4	0.849	NON_SYNONYMOUS_CODING ssh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15037500	2R_15037500_SNP [dm3] 2R_19149995_SNP [dm6]	A	G	1.090e^-4	0.849	INTRON ena
X	199585	X_199585_SNP [dm3] X_305552_SNP [dm6]	G	A	1.091e^-4	0.849	INTRON CG3777	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3103346	3L_3103346_SNP [dm3] 3L_3103346_SNP [dm6]	T	C	1.098e^-4	0.851	INTRON Cht7
3L	13752639	3L_13752639_SNP [dm3] 3L_13759539_SNP [dm6]	C	T	1.103e^-4	0.851	INTRON bru-3
2R	18261053	2R_18261053_SNP [dm3] 2R_22373548_SNP [dm6]	C	A	1.117e^-4	0.857	UPSTREAM Liprin-gamma DOWNSTREAM CR44759 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21513479	3R_21513479_SNP [dm3] 3R_25687757_SNP [dm6]	A	T	1.122e^-4	0.857	UPSTREAM CLS INTERGENIC
2L	8888903	2L_8888903_SNP [dm3] 2L_8888903_SNP [dm6]	A	G	1.127e^-4	0.857	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2R	15430575	2R_15430575_SNP [dm3] 2R_19543070_SNP [dm6]	A	G	1.129e^-4	0.857	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17650408	3R_17650408_INS [dm3] 3R_21824686_INS [dm6]	C	CC	1.145e^-4	0.862	DOWNSTREAM CR45632 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	4091148	3L_4091148_SNP [dm3] 3L_4091148_SNP [dm6]	A	G	1.151e^-4	0.862	UTR_3_PRIME CG14989 DOWNSTREAM CG14989
2R	15037481	2R_15037481_SNP [dm3] 2R_19149976_SNP [dm6]	C	G	1.154e^-4	0.862	INTRON ena
2L	16464520	2L_16464520_SNP [dm3] 2L_16464520_SNP [dm6]	C	A	1.156e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	20293172	2L_20293172_SNP [dm3] 2L_20293172_SNP [dm6]	T	A	1.158e^-4	0.862	INTERGENIC
2R	12566599	2R_12566599_SNP [dm3] 2R_16679094_SNP [dm6]	A	G	1.163e^-4	0.862	INTRON CG30463
2R	16051913	2R_16051913_SNP [dm3] 2R_20164408_SNP [dm6]	G	A	1.172e^-4	0.863	INTERGENIC
2R	1094497	2R_1094497_SNP [dm3] 2R_5206992_SNP [dm6]	C	T	1.174e^-4	0.863	INTRON Nipped-A	transposable element FlyBase
2R	12820809	2R_12820809_SNP [dm3] 2R_16933304_SNP [dm6]	C	T	1.183e^-4	0.863	INTRON Pkc53E
2L	15506015	2L_15506015_SNP [dm3] 2L_15506015_SNP [dm6]	A	G	1.207e^-4	0.863	DOWNSTREAM lace INTERGENIC
2R	17605250	2R_17605250_SNP [dm3] 2R_21717745_SNP [dm6]	G	C	1.208e^-4	0.863	UPSTREAM CG30398 INTRON Tango11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8548823	2L_8548823_SNP [dm3] 2L_8548823_SNP [dm6]	G	T	1.221e^-4	0.863	INTRON Sema-1a
2R	14760363	2R_14760363_SNP [dm3] 2R_18872858_SNP [dm6]	G	T	1.226e^-4	0.863	INTERGENIC
2R	18856731	2R_18856731_SNP [dm3] 2R_22969208_SNP [dm6]	A	G	1.239e^-4	0.863	INTERGENIC
3L	12186370	3L_12186370_SNP [dm3] 3L_12193270_SNP [dm6]	A	G	1.241e^-4	0.863	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	5387420	2L_5387420_SNP [dm3] 2L_5387420_SNP [dm6]	T	A	1.245e^-4	0.863	UPSTREAM CR44745 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	205326	X_205326_SNP [dm3] X_311293_SNP [dm6]	G	A	1.249e^-4	0.863	INTRON CG3777
3L	9314463	3L_9314463_SNP [dm3] 3L_9321363_SNP [dm6]	A	T	1.261e^-4	0.863	INTERGENIC
2L	15108630	2L_15108630_SNP [dm3] 2L_15108630_SNP [dm6]	G	C	1.263e^-4	0.863	UPSTREAM CG15269 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8505450	2L_8505450_SNP [dm3] 2L_8505450_SNP [dm6]	T	C	1.276e^-4	0.863	INTRON Dh31
2R	12590666	2R_12590666_SNP [dm3] 2R_16703161_SNP [dm6]	T	C	1.278e^-4	0.863	INTRON CG30463
3L	13900499	3L_13900499_SNP [dm3] 3L_13907399_SNP [dm6]	A	C	1.284e^-4	0.863	UTR_3_PRIME Rgl
3R	21461676	3R_21461676_SNP [dm3] 3R_25635954_SNP [dm6]	A	G	1.294e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6077523	2R_6077523_SNP [dm3] 2R_10190018_SNP [dm6]	A	G	1.299e^-4	0.863	INTRON KCNQ
2R	18349556	2R_18349556_SNP [dm3] 2R_22462051_SNP [dm6]	C	T	1.306e^-4	0.863	INTRON CG10384
3L	1411510	3L_1411510_SNP [dm3] 3L_1411510_SNP [dm6]	C	T	1.309e^-4	0.863	INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1261855	3L_1261855_SNP [dm3] 3L_1261855_SNP [dm6]	G	A	1.311e^-4	0.863	SYNONYMOUS_CODING CG9134
2R	1642230	2R_1642230_SNP [dm3] 2R_5754725_SNP [dm6]	C	T	1.314e^-4	0.863	NON_SYNONYMOUS_CODING l_2_09851	TF binding site mE1_TFBS_cad
2L	16191813	2L_16191813_SNP [dm3] 2L_16191813_SNP [dm6]	A	T	1.324e^-4	0.863	INTERGENIC
3L	17437177	3L_17437177_SNP [dm3] 3L_17444077_SNP [dm6]	T	C	1.325e^-4	0.863	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8531677	2L_8531677_SNP [dm3] 2L_8531677_SNP [dm6]	C	T	1.331e^-4	0.863	INTRON CG17834
2L	3299416	2L_3299416_SNP [dm3] 2L_3299416_SNP [dm6]	T	A	1.333e^-4	0.863	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3299468	2L_3299468_SNP [dm3] 2L_3299468_SNP [dm6]	T	C	1.333e^-4	0.863	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3299531	2L_3299531_SNP [dm3] 2L_3299531_SNP [dm6]	A	C	1.333e^-4	0.863	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	18386073	2L_18386073_SNP [dm3] 2L_18386073_SNP [dm6]	T	C	1.336e^-4	0.863	INTRON Fas3
2L	16191810	2L_16191810_SNP [dm3] 2L_16191810_SNP [dm6]	C	G	1.336e^-4	0.863	INTERGENIC
2R	13920091	2R_13920091_SNP [dm3] 2R_18032586_SNP [dm6]	T	A	1.344e^-4	0.863	INTERGENIC
3R	13466615	3R_13466615_SNP [dm3] 3R_17640893_SNP [dm6]	T	A	1.348e^-4	0.863	INTRON CG43175
3R	3696570	3R_3696570_SNP [dm3] 3R_7870848_SNP [dm6]	T	G	1.350e^-4	0.863	INTRON CG17816
2L	18551182	2L_18551182_SNP [dm3] 2L_18551182_SNP [dm6]	A	T	1.351e^-4	0.863	INTRON Pde11
2L	13700213	2L_13700213_SNP [dm3] 2L_13700213_SNP [dm6]	C	T	1.356e^-4	0.863	INTRON CG31814
2R	14760371	2R_14760371_SNP [dm3] 2R_18872866_SNP [dm6]	G	A	1.358e^-4	0.863	INTERGENIC
2R	21002782	2R_21002782_SNP [dm3] 2R_25115259_SNP [dm6]	C	T	1.370e^-4	0.863	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16000760	2R_16000760_SNP [dm3] 2R_20113255_SNP [dm6]	C	G	1.373e^-4	0.863	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10767469	2L_10767469_SNP [dm3] 2L_10767469_SNP [dm6]	G	A	1.381e^-4	0.863	UPSTREAM UbcD2 DOWNSTREAM CG6724 INTRON UbcD2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	24704511	3R_24704511_SNP [dm3] 3R_28878789_SNP [dm6]	T	A	1.395e^-4	0.863	SYNONYMOUS_CODING CG14523 DOWNSTREAM CG14528 INTRON CG33203	TF binding site mE1_TFBS_HSA
2L	3471289	2L_3471289_SNP [dm3] 2L_3471289_SNP [dm6]	A	C	1.399e^-4	0.863	SYNONYMOUS_CODING CG31776
2L	3299198	2L_3299198_SNP [dm3] 2L_3299198_SNP [dm6]	T	G	1.407e^-4	0.863	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17496873	2R_17496873_SNP [dm3] 2R_21609368_SNP [dm6]	T	C	1.413e^-4	0.863	DOWNSTREAM CR43243 INTRON CG15673
2R	14675772	2R_14675772_SNP [dm3] 2R_18788267_SNP [dm6]	C	G	1.414e^-4	0.863	INTRON CG15080
3R	20766471	3R_20766471_SNP [dm3] 3R_24940749_SNP [dm6]	C	G	1.414e^-4	0.863	NON_SYNONYMOUS_CODING ssh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8507616	2L_8507616_SNP [dm3] 2L_8507616_SNP [dm6]	G	A	1.418e^-4	0.863	UPSTREAM Dh31 INTERGENIC
2R	6051793	2R_6051793_SNP [dm3] 2R_10164288_SNP [dm6]	G	T	1.423e^-4	0.863	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
X	20335446	X_20335446_SNP [dm3] X_20464419_SNP [dm6]	G	A	1.440e^-4	0.863	INTRON CG32506	transposable element FlyBase
X	6652205	X_6652205_DEL [dm3] X_6758172_DEL [dm6]	AA	A	1.441e^-4	0.863	DOWNSTREAM CR43496 INTRON CG14438	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	22963932	3R_22963932_SNP [dm3] 3R_27138210_SNP [dm6]	A	T	1.442e^-4	0.863	INTRON CG6051
2L	8534902	2L_8534902_SNP [dm3] 2L_8534902_SNP [dm6]	T	A	1.453e^-4	0.863	UPSTREAM CG17834 INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	13350610	2R_13350610_SNP [dm3] 2R_17463105_SNP [dm6]	A	G	1.457e^-4	0.863	SYNONYMOUS_CODING CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	13466649	3R_13466649_SNP [dm3] 3R_17640927_SNP [dm6]	A	C	1.462e^-4	0.863	INTRON CG43175
3L	9094839	3L_9094839_SNP [dm3] 3L_9101739_SNP [dm6]	A	G	1.479e^-4	0.863	UTR_3_PRIME bol
3L	17437247	3L_17437247_SNP [dm3] 3L_17444147_SNP [dm6]	A	G	1.480e^-4	0.863	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2671270	2L_2671270_SNP [dm3] 2L_2671270_SNP [dm6]	C	T	1.483e^-4	0.863	SYNONYMOUS_CODING Gr23a INTRON Gr23a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6282767	3L_6282767_SNP [dm3] 3L_6289667_SNP [dm6]	G	A	1.492e^-4	0.863	INTERGENIC
2R	2754460	2R_2754460_SNP [dm3] 2R_6866955_SNP [dm6]	A	G	1.494e^-4	0.863	INTRON coro
3L	5486796	3L_5486796_SNP [dm3] 3L_5493696_SNP [dm6]	G	T	1.507e^-4	0.863	EXON CR44520
2L	3298111	2L_3298111_SNP [dm3] 2L_3298111_SNP [dm6]	G	T	1.507e^-4	0.863	INTRON CG9663	TF binding site BDTNP1_TFBS_da
2L	21945896	2L_21945896_SNP [dm3] 2L_21945896_SNP [dm6]	T	A	1.510e^-4	0.863	INTERGENIC
2R	13049284	2R_13049284_SNP [dm3] 2R_17161779_SNP [dm6]	A	T	1.520e^-4	0.863	UPSTREAM CG30457 INTERGENIC
2L	9465597	2L_9465597_SNP [dm3] 2L_9465597_SNP [dm6]	T	G	1.525e^-4	0.863	INTERGENIC
2R	14698646	2R_14698646_SNP [dm3] 2R_18811141_SNP [dm6]	T	A	1.534e^-4	0.863	INTRON CG15096
2L	3935140	2L_3935140_SNP [dm3] 2L_3935140_SNP [dm6]	T	G	1.539e^-4	0.863	INTRON fred
2L	16464505	2L_16464505_SNP [dm3] 2L_16464505_SNP [dm6]	A	T	1.544e^-4	0.863	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	3298999	2L_3298999_SNP [dm3] 2L_3298999_SNP [dm6]	G	A	1.566e^-4	0.863	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	21019195	2R_21019195_SNP [dm3] 2R_25131672_SNP [dm6]	G	T	1.566e^-4	0.863	INTRON lov
3L	14189345	3L_14189345_SNP [dm3] 3L_14196245_SNP [dm6]	A	T	1.572e^-4	0.863	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14762180	2R_14762180_SNP [dm3] 2R_18874675_SNP [dm6]	C	T	1.573e^-4	0.863	INTERGENIC
X	4860923	X_4860923_INS [dm3] X_4966890_INS [dm6]	A	AA	1.574e^-4	0.863	INTRON CR44833	regulatory region REDfly_CRMs
2R	13563438	2R_13563438_SNP [dm3] 2R_17675933_SNP [dm6]	A	G	1.581e^-4	0.863	SYNONYMOUS_CODING Sema-1b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6918832	2R_6918832_DEL [dm3] 2R_11031327_DEL [dm6]	CGTACAATAAT...	C	1.583e^-4	0.863	INTRON luna
2R	6918846	2R_6918846_SNP [dm3] 2R_11031341_SNP [dm6]	A	T	1.583e^-4	0.863	INTRON luna
2R	13023236	2R_13023236_SNP [dm3] 2R_17135731_SNP [dm6]	T	G	1.594e^-4	0.863	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
2L	1344309	2L_1344309_INS [dm3] 2L_1344309_INS [dm6]	G	GTCAGCTAATAAG...	1.598e^-4	0.863	UPSTREAM Cdlc2 & 1 other INTERGENIC
X	7803518	X_7803518_SNP [dm3] X_7909485_SNP [dm6]	C	G	1.606e^-4	0.863	SYNONYMOUS_CODING CG1444	TF binding site BDTNP1_TFBS_dl
2R	13861292	2R_13861292_SNP [dm3] 2R_17973787_SNP [dm6]	A	T	1.611e^-4	0.863	INTERGENIC
2R	15768682	2R_15768682_SNP [dm3] 2R_19881177_SNP [dm6]	T	G	1.626e^-4	0.863	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	11280479	2R_11280479_SNP [dm3] 2R_15392974_SNP [dm6]	A	T	1.635e^-4	0.863	INTERGENIC
2L	10700305	2L_10700305_SNP [dm3] 2L_10700305_SNP [dm6]	C	T	1.635e^-4	0.863	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19613428	3R_19613428_SNP [dm3] 3R_23787706_SNP [dm6]	C	T	1.638e^-4	0.863	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
2L	3458990	2L_3458990_SNP [dm3] 2L_3458990_SNP [dm6]	C	T	1.639e^-4	0.863	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15074805	2R_15074805_SNP [dm3] 2R_19187300_SNP [dm6]	G	C	1.643e^-4	0.863	INTRON hppy
2R	12614524	2R_12614524_INS [dm3] 2R_16727019_INS [dm6]	C	CGTTC	1.646e^-4	0.863	INTRON CG30463
2R	13864914	2R_13864914_SNP [dm3] 2R_17977409_SNP [dm6]	C	T	1.649e^-4	0.863	INTRON dpr13
3L	14189438	3L_14189438_SNP [dm3] 3L_14196338_SNP [dm6]	G	T	1.667e^-4	0.863	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	4065155	X_4065155_SNP [dm3] X_4171122_SNP [dm6]	G	A	1.684e^-4	0.863	INTRON Fas2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14682683	2L_14682683_SNP [dm3] 2L_14682683_SNP [dm6]	A	G	1.692e^-4	0.863	INTRON osp
3R	16932144	3R_16932144_SNP [dm3] 3R_21106422_SNP [dm6]	C	T	1.694e^-4	0.863	SYNONYMOUS_CODING Sec15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12778245	2R_12778245_SNP [dm3] 2R_16890740_SNP [dm6]	A	G	1.707e^-4	0.863	INTRON CG8910	TF binding site BDTNP1_TFBS_dl
2R	9165065	2R_9165065_SNP [dm3] 2R_13277560_SNP [dm6]	T	C	1.708e^-4	0.863	NON_SYNONYMOUS_CODING Dh31-R
3L	10919146	3L_10919146_SNP [dm3] 3L_10926046_SNP [dm6]	C	A	1.723e^-4	0.863	INTERGENIC
2L	7515537	2L_7515537_SNP [dm3] 2L_7515537_SNP [dm6]	G	A	1.725e^-4	0.863	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2R	6893533	2R_6893533_SNP [dm3] 2R_11006028_SNP [dm6]	G	A	1.738e^-4	0.863	INTRON luna
2L	3297208	2L_3297208_SNP [dm3] 2L_3297208_SNP [dm6]	T	C	1.742e^-4	0.863	SYNONYMOUS_CODING CG9663
X	13977711	X_13977711_SNP [dm3] X_14083678_SNP [dm6]	C	T	1.751e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14189729	3L_14189729_SNP [dm3] 3L_14196629_SNP [dm6]	G	T	1.758e^-4	0.863	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10154841	3L_10154841_SNP [dm3] 3L_10161741_SNP [dm6]	G	T	1.768e^-4	0.863	INTRON dpr10
3L	16581485	3L_16581485_SNP [dm3] 3L_16588385_SNP [dm6]	G	A	1.773e^-4	0.863	UPSTREAM l_3_73Ah DOWNSTREAM CG32163 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	16114886	2R_16114886_SNP [dm3] 2R_20227381_SNP [dm6]	G	T	1.786e^-4	0.863	INTERGENIC
2R	18040585	2R_18040585_DEL [dm3] 2R_22153080_DEL [dm6]	TCTAAA	T	1.804e^-4	0.863	INTRON a	TF binding site mE1_TFBS_cnc
2R	14698634	2R_14698634_DEL [dm3] 2R_18811129_DEL [dm6]	TT	T	1.811e^-4	0.863	INTRON CG15096
3L	8288353	3L_8288353_SNP [dm3] 3L_8295253_SNP [dm6]	T	A	1.815e^-4	0.863	UTR_5_PRIME CG7201
3L	14189363	3L_14189363_SNP [dm3] 3L_14196263_SNP [dm6]	C	A	1.825e^-4	0.863	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18081851	2R_18081851_SNP [dm3] 2R_22194346_SNP [dm6]	A	G	1.825e^-4	0.863	INTRON Swim
2L	2485819	2L_2485819_SNP [dm3] 2L_2485819_SNP [dm6]	G	C	1.827e^-4	0.863	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	14765561	2R_14765561_SNP [dm3] 2R_18878056_SNP [dm6]	T	C	1.830e^-4	0.863	UPSTREAM sano INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10552482	2L_10552482_SNP [dm3] 2L_10552482_SNP [dm6]	A	T	1.838e^-4	0.863	INTRON Trim9
2R	14571863	2R_14571863_SNP [dm3] 2R_18684358_SNP [dm6]	C	T	1.841e^-4	0.863	UTR_3_PRIME CG44433 UPSTREAM CG44434 & 1 other
X	12261070	X_12261070_SNP [dm3] X_12367037_SNP [dm6]	C	T	1.848e^-4	0.863	INTERGENIC
2L	13022926	2L_13022926_SNP [dm3] 2L_13022926_SNP [dm6]	A	T	1.854e^-4	0.863	UTR_3_PRIME CG9932
3R	15854306	3R_15854306_SNP [dm3] 3R_20028584_SNP [dm6]	C	G	1.859e^-4	0.863	NON_SYNONYMOUS_CODING CG4854 UPSTREAM CG4424 DOWNSTREAM trem	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	3813006	3R_3813006_SNP [dm3] 3R_7987284_SNP [dm6]	C	T	1.862e^-4	0.863	INTRON CG2781
2L	2671757	2L_2671757_SNP [dm3] 2L_2671757_SNP [dm6]	C	T	1.881e^-4	0.863	SYNONYMOUS_CODING Gr23a INTRON Gr23a
2R	1248971	2R_1248971_SNP [dm3] 2R_5361466_SNP [dm6]	A	G	1.887e^-4	0.863	SYNONYMOUS_CODING CG10417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11415610	X_11415610_DEL [dm3] X_11521577_DEL [dm6]	TCC	T	1.888e^-4	0.863	INTRON Drak	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20993444	2R_20993444_SNP [dm3] 2R_25105921_SNP [dm6]	T	C	1.889e^-4	0.863	INTRON lov
2R	13042890	2R_13042890_SNP [dm3] 2R_17155385_SNP [dm6]	C	T	1.893e^-4	0.863	UTR_3_PRIME CG17290 DOWNSTREAM CG17290
2L	3330336	2L_3330336_SNP [dm3] 2L_3330336_SNP [dm6]	A	T	1.894e^-4	0.863	UPSTREAM CG3285 DOWNSTREAM CG33282 INTERGENIC
3L	10919175	3L_10919175_SNP [dm3] 3L_10926075_SNP [dm6]	G	A	1.906e^-4	0.863	INTERGENIC
3R	24826153	3R_24826153_SNP [dm3] 3R_29000431_SNP [dm6]	C	T	1.908e^-4	0.863	INTRON wat
3L	9566698	3L_9566698_SNP [dm3] 3L_9573598_SNP [dm6]	T	C	1.909e^-4	0.863	INTRON CG42673
3R	26019265	3R_26019265_SNP [dm3] 3R_30193543_SNP [dm6]	C	A	1.918e^-4	0.863	INTERGENIC
2L	5929587	2L_5929587_DEL [dm3] 2L_5929587_DEL [dm6]	AA	G	1.922e^-4	0.863	INTRON dsf
2R	6051808	2R_6051808_SNP [dm3] 2R_10164303_SNP [dm6]	G	T	1.925e^-4	0.863	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
2L	12114011	2L_12114011_SNP [dm3] 2L_12114011_SNP [dm6]	T	G	1.933e^-4	0.863	UPSTREAM CG17211 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12888028	2R_12888028_SNP [dm3] 2R_17000523_SNP [dm6]	A	G	1.935e^-4	0.863	SYNONYMOUS_CODING ste24a UPSTREAM ste24b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11025077	3L_11025077_SNP [dm3] 3L_11031977_SNP [dm6]	G	C	1.935e^-4	0.863	INTERGENIC
X	7910248	X_7910248_SNP [dm3] X_8016215_SNP [dm6]	A	G	1.939e^-4	0.863	INTRON Tbh
2L	3297421	2L_3297421_SNP [dm3] 2L_3297421_SNP [dm6]	G	A	1.940e^-4	0.863	INTRON CG9663
2R	12614577	2R_12614577_INS [dm3] 2R_16727072_INS [dm6]	A	ACATA	1.940e^-4	0.863	INTRON CG30463	TF binding site mE1_TFBS_inv
2R	14732687	2R_14732687_SNP [dm3] 2R_18845182_SNP [dm6]	A	G	1.943e^-4	0.863	SYNONYMOUS_CODING CG15099
2R	11271904	2R_11271904_SNP [dm3] 2R_15384399_SNP [dm6]	G	T	1.946e^-4	0.863	INTRON SRPK
X	19110458	X_19110458_SNP [dm3] X_19216425_SNP [dm6]	A	C	1.949e^-4	0.863	NON_SYNONYMOUS_CODING Muc18B	TF binding site BDTNP1_TFBS_da
2R	15430637	2R_15430637_SNP [dm3] 2R_19543132_SNP [dm6]	A	G	1.953e^-4	0.863	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	22216578	3R_22216578_SNP [dm3] 3R_26390856_SNP [dm6]	G	C	1.953e^-4	0.863	INTERGENIC
2L	7471656	2L_7471656_SNP [dm3] 2L_7471656_SNP [dm6]	T	C	1.961e^-4	0.863	SYNONYMOUS_CODING CG6055 DOWNSTREAM Ziz
2R	15329397	2R_15329397_SNP [dm3] 2R_19441892_SNP [dm6]	G	A	1.964e^-4	0.863	UTR_3_PRIME Spt5 UPSTREAM RpL11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	16191879	2L_16191879_SNP [dm3] 2L_16191879_SNP [dm6]	G	T	1.965e^-4	0.863	INTERGENIC
2L	15108765	2L_15108765_SNP [dm3] 2L_15108765_SNP [dm6]	T	G	1.965e^-4	0.863	UPSTREAM CG15269 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	19923264	X_19923264_SNP [dm3] X_20029231_SNP [dm6]	C	T	1.966e^-4	0.863	INTRON Dop2R
3L	1198495	3L_1198495_DEL [dm3] 3L_1198495_DEL [dm6]	TC	T	1.971e^-4	0.863	INTRON Aplip1
3R	9877375	3R_9877375_SNP [dm3] 3R_14051653_SNP [dm6]	T	A	1.975e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13563432	2R_13563432_SNP [dm3] 2R_17675927_SNP [dm6]	G	A	1.990e^-4	0.863	SYNONYMOUS_CODING Sema-1b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	21000655	2R_21000655_SNP [dm3] 2R_25113132_SNP [dm6]	A	C	1.992e^-4	0.863	INTRON lov	TF binding site mE1_TFBS_HSA
2R	14759254	2R_14759254_SNP [dm3] 2R_18871749_SNP [dm6]	C	G	1.999e^-4	0.863	INTERGENIC
2L	14686127	2L_14686127_SNP [dm3] 2L_14686127_SNP [dm6]	A	T	2.002e^-4	0.863	INTRON osp
2L	11786248	2L_11786248_SNP [dm3] 2L_11786248_SNP [dm6]	G	A	2.002e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25821908	3R_25821908_SNP [dm3] 3R_29996186_SNP [dm6]	T	A	2.007e^-4	0.863	NON_SYNONYMOUS_CODING Sas-6 UPSTREAM CG7903 DOWNSTREAM CG15525	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	21006120	2R_21006120_SNP [dm3] 2R_25118597_SNP [dm6]	A	G	2.009e^-4	0.863	INTRON lov
3L	4109588	3L_4109588_SNP [dm3] 3L_4109588_SNP [dm6]	C	G	2.011e^-4	0.863	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21429529	3R_21429529_SNP [dm3] 3R_25603807_SNP [dm6]	A	C	2.012e^-4	0.863	UTR_3_PRIME msi INTRON ymp
3L	15697437	3L_15697437_SNP [dm3] 3L_15704337_SNP [dm6]	G	C	2.018e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18581297	2L_18581297_SNP [dm3] 2L_18581297_SNP [dm6]	C	G	2.019e^-4	0.863	INTRON Pde11
2R	6971123	2R_6971123_SNP [dm3] 2R_11083618_SNP [dm6]	A	G	2.028e^-4	0.863	INTRON luna
2L	3814694	2L_3814694_SNP [dm3] 2L_3814694_SNP [dm6]	A	T	2.036e^-4	0.863	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	13977656	X_13977656_SNP [dm3] X_14083623_SNP [dm6]	G	C	2.037e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18038503	2R_18038503_SNP [dm3] 2R_22150998_SNP [dm6]	C	T	2.040e^-4	0.863	INTRON a
3R	25114878	3R_25114878_SNP [dm3] 3R_29289156_SNP [dm6]	G	T	2.046e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	2.050e^-4	0.863	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	3499286	2L_3499286_SNP [dm3] 2L_3499286_SNP [dm6]	G	A	2.058e^-4	0.863	INTRON tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	8605787	3L_8605787_DEL [dm3] 3L_8612687_DEL [dm6]	TCC	T	2.066e^-4	0.863	INTRON CG6282
2L	8888980	2L_8888980_SNP [dm3] 2L_8888980_SNP [dm6]	A	T	2.068e^-4	0.863	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2R	12242914	2R_12242914_SNP [dm3] 2R_16355409_SNP [dm6]	G	A	2.071e^-4	0.863	UPSTREAM CG30098 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	975294	3L_975294_SNP [dm3] 3L_975294_SNP [dm6]	A	C	2.078e^-4	0.863	INTRON Glut1
X	12261105	X_12261105_SNP [dm3] X_12367072_SNP [dm6]	G	T	2.088e^-4	0.863	INTERGENIC
2L	15863683	2L_15863683_SNP [dm3] 2L_15863683_SNP [dm6]	G	A	2.090e^-4	0.863	DOWNSTREAM CR42791 INTERGENIC
2R	13808818	2R_13808818_SNP [dm3] 2R_17921313_SNP [dm6]	G	A	2.094e^-4	0.863	INTRON Elk
2L	11748575	2L_11748575_SNP [dm3] 2L_11748575_SNP [dm6]	C	A	2.095e^-4	0.863	INTERGENIC
3R	24277194	3R_24277194_DEL [dm3] 3R_28451472_DEL [dm6]	AA	A	2.096e^-4	0.863	INTRON beat-VI
3R	26913697	3R_26913697_SNP [dm3] 3R_31087975_SNP [dm6]	T	G	2.098e^-4	0.863	INTERGENIC
3L	10716126	3L_10716126_SNP [dm3] 3L_10723026_SNP [dm6]	A	C	2.103e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12378807	X_12378807_SNP [dm3] X_12484774_SNP [dm6]	C	A	2.104e^-4	0.863	INTERGENIC
2L	9188772	2L_9188772_SNP [dm3] 2L_9188772_SNP [dm6]	C	T	2.107e^-4	0.863	INTRON tai
2L	8762613	2L_8762613_SNP [dm3] 2L_8762613_SNP [dm6]	C	G	2.108e^-4	0.863	INTERGENIC
2L	11796398	2L_11796398_SNP [dm3] 2L_11796398_SNP [dm6]	G	A	2.115e^-4	0.863	UTR_3_PRIME crol
2L	10368938	2L_10368938_SNP [dm3] 2L_10368938_SNP [dm6]	C	A	2.116e^-4	0.863	DOWNSTREAM CG5056 INTRON rho-5	TF binding site mE1_TFBS_cad
3L	10812279	3L_10812279_SNP [dm3] 3L_10819179_SNP [dm6]	G	A	2.118e^-4	0.863	INTERGENIC
3R	24123760	3R_24123760_SNP [dm3] 3R_28298038_SNP [dm6]	A	C	2.122e^-4	0.863	INTERGENIC
2L	15008647	2L_15008647_SNP [dm3] 2L_15008647_SNP [dm6]	T	A	2.123e^-4	0.863	UTR_3_PRIME l_2_35Bc DOWNSTREAM NC2beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26913715	3R_26913715_DEL [dm3] 3R_31087993_DEL [dm6]	AT	A	2.123e^-4	0.863	INTERGENIC
2R	6893639	2R_6893639_SNP [dm3] 2R_11006134_SNP [dm6]	G	A	2.126e^-4	0.863	INTRON luna
2L	7954157	2L_7954157_INS [dm3] 2L_7954157_INS [dm6]	T	TGGT	2.128e^-4	0.863	INTRON Snoo
3L	5985731	3L_5985731_SNP [dm3] 3L_5992631_SNP [dm6]	A	C	2.133e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	13860446	2R_13860446_SNP [dm3] 2R_17972941_SNP [dm6]	T	C	2.135e^-4	0.863	INTERGENIC
2L	14092483	2L_14092483_SNP [dm3] 2L_14092483_SNP [dm6]	G	A	2.141e^-4	0.863	UTR_3_PRIME nAChRalpha5
3R	25662900	3R_25662900_SNP [dm3] 3R_29837178_SNP [dm6]	G	C	2.144e^-4	0.863	NON_SYNONYMOUS_CODING CG15510 UPSTREAM CG42592	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	14338872	3L_14338872_SNP [dm3] 3L_14345772_SNP [dm6]	A	C	2.146e^-4	0.863	INTRON fz
2R	7898267	2R_7898267_SNP [dm3] 2R_12010762_SNP [dm6]	T	C	2.152e^-4	0.863	INTRON otk	regulatory region REDfly_CRMs
X	3335969	X_3335969_INS [dm3] X_3441936_INS [dm6]	T	CGGGG	2.154e^-4	0.863	INTRON CR44999 & 1 other
2R	17494695	2R_17494695_SNP [dm3] 2R_21607190_SNP [dm6]	A	G	2.159e^-4	0.863	UTR_5_PRIME CG10433 UPSTREAM CR43243 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2952830	3L_2952830_SNP [dm3] 3L_2952830_SNP [dm6]	A	G	2.164e^-4	0.863	INTRON Shab
X	85460	X_85460_SNP [dm3] X_188456_SNP [dm6]	A	G	2.171e^-4	0.863	INTRON tyn
2R	17480673	2R_17480673_SNP [dm3] 2R_21593168_SNP [dm6]	T	C	2.172e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11271925	2R_11271925_SNP [dm3] 2R_15384420_SNP [dm6]	G	T	2.174e^-4	0.863	INTRON SRPK
2L	5382237	2L_5382237_SNP [dm3] 2L_5382237_SNP [dm6]	T	C	2.187e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1253811	3L_1253811_SNP [dm3] 3L_1253811_SNP [dm6]	A	C	2.190e^-4	0.863	UPSTREAM CG9133 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_cad
2L	3814807	2L_3814807_SNP [dm3] 2L_3814807_SNP [dm6]	A	G	2.190e^-4	0.863	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	15814105	3R_15814105_SNP [dm3] 3R_19988383_SNP [dm6]	A	G	2.191e^-4	0.863	INTRON Hs6st	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14337650	3L_14337650_SNP [dm3] 3L_14344550_SNP [dm6]	G	A	2.191e^-4	0.863	INTRON fz
2R	7897994	2R_7897994_SNP [dm3] 2R_12010489_SNP [dm6]	T	C	2.195e^-4	0.863	INTRON otk	regulatory region REDfly_CRMs
2L	14682685	2L_14682685_SNP [dm3] 2L_14682685_SNP [dm6]	A	T	2.195e^-4	0.863	INTRON osp
2L	8548569	2L_8548569_SNP [dm3] 2L_8548569_SNP [dm6]	A	G	2.195e^-4	0.863	INTRON Sema-1a
2R	7897996	2R_7897996_SNP [dm3] 2R_12010491_SNP [dm6]	A	T	2.201e^-4	0.863	INTRON otk	regulatory region REDfly_CRMs
X	15868146	X_15868146_SNP [dm3] X_15974113_SNP [dm6]	C	T	2.207e^-4	0.863	UPSTREAM mmd & 1 other DOWNSTREAM CR45527 INTERGENIC
2L	3935194	2L_3935194_SNP [dm3] 2L_3935194_SNP [dm6]	T	C	2.210e^-4	0.863	INTRON fred
2L	3298986	2L_3298986_SNP [dm3] 2L_3298986_SNP [dm6]	C	G	2.211e^-4	0.863	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10440508	2L_10440508_SNP [dm3] 2L_10440508_SNP [dm6]	T	A	2.212e^-4	0.863	SPLICE_SITE_REGION CG13142 INTRON CG13142
2R	6077599	2R_6077599_SNP [dm3] 2R_10190094_SNP [dm6]	C	T	2.217e^-4	0.863	INTRON KCNQ
3R	26389895	3R_26389895_SNP [dm3] 3R_30564173_SNP [dm6]	T	A	2.221e^-4	0.863	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	18747898	3L_18747898_SNP [dm3] 3L_18754798_SNP [dm6]	T	C	2.223e^-4	0.863	INTRON ftz-f1
2R	14761204	2R_14761204_SNP [dm3] 2R_18873699_SNP [dm6]	C	T	2.229e^-4	0.863	INTERGENIC
2R	18038455	2R_18038455_SNP [dm3] 2R_22150950_SNP [dm6]	A	T	2.230e^-4	0.863	INTRON a
3R	16899060	3R_16899060_DEL [dm3] 3R_21073338_DEL [dm6]	TGT	T	2.234e^-4	0.863	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	7213457	2L_7213457_SNP [dm3] 2L_7213457_SNP [dm6]	C	A	2.239e^-4	0.863	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13563410	2R_13563410_SNP [dm3] 2R_17675905_SNP [dm6]	A	G	2.239e^-4	0.863	SPLICE_SITE_REGION Sema-1b INTRON Sema-1b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13437423	3R_13437423_SNP [dm3] 3R_17611701_SNP [dm6]	C	T	2.240e^-4	0.863	UPSTREAM Edg91 INTERGENIC
3R	25223418	3R_25223418_SNP [dm3] 3R_29397696_SNP [dm6]	G	A	2.257e^-4	0.863	INTRON Ptp99A
2R	17604614	2R_17604614_DEL [dm3] 2R_21717109_DEL [dm6]	AGAGATTA	A	2.259e^-4	0.863	UTR_3_PRIME Tango11 UPSTREAM CG30398 DOWNSTREAM HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	4612569	2L_4612569_SNP [dm3] 2L_4612569_SNP [dm6]	A	G	2.261e^-4	0.863	INTRON dp
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	2.261e^-4	0.863	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2R	12615170	2R_12615170_SNP [dm3] 2R_16727665_SNP [dm6]	A	G	2.269e^-4	0.863	INTRON CG30463	TF binding site mE1_TFBS_inv
2R	13368152	2R_13368152_SNP [dm3] 2R_17480647_SNP [dm6]	G	T	2.273e^-4	0.863	SPLICE_SITE_REGION veil UTR_3_PRIME CG43110 INTRON veil	TF binding site mE1_TFBS_cad
3L	14886079	3L_14886079_SNP [dm3] 3L_14892979_SNP [dm6]	A	G	2.276e^-4	0.863	DOWNSTREAM CG34245 INTERGENIC
2L	15466180	2L_15466180_SNP [dm3] 2L_15466180_SNP [dm6]	C	A	2.279e^-4	0.863	INTERGENIC
3R	26812461	3R_26812461_SNP [dm3] 3R_30986739_SNP [dm6]	A	G	2.280e^-4	0.863	INTRON 5-HT7
3L	12641401	3L_12641401_SNP [dm3] 3L_12648301_SNP [dm6]	A	T	2.286e^-4	0.863	DOWNSTREAM CR43431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	22977134	3R_22977134_SNP [dm3] 3R_27151412_SNP [dm6]	T	G	2.313e^-4	0.863	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11021644	3L_11021644_SNP [dm3] 3L_11028544_SNP [dm6]	G	C	2.317e^-4	0.863	SYNONYMOUS_CODING CG32081	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9083721	2L_9083721_SNP [dm3] 2L_9083721_SNP [dm6]	C	A	2.317e^-4	0.863	UPSTREAM Toll-4 INTERGENIC
X	4874396	X_4874396_SNP [dm3] X_4980363_SNP [dm6]	T	G	2.318e^-4	0.863	INTRON CR44833
2L	8548824	2L_8548824_SNP [dm3] 2L_8548824_SNP [dm6]	A	T	2.335e^-4	0.863	INTRON Sema-1a
2R	12242954	2R_12242954_SNP [dm3] 2R_16355449_SNP [dm6]	A	C	2.338e^-4	0.863	UPSTREAM CG30098 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17437174	3L_17437174_INS [dm3] 3L_17444074_INS [dm6]	T	TAAACTTATGTT...	2.343e^-4	0.863	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1344298	2L_1344298_SNP [dm3] 2L_1344298_SNP [dm6]	G	A	2.345e^-4	0.863	UPSTREAM Cdlc2 & 1 other INTERGENIC
2L	3299038	2L_3299038_SNP [dm3] 2L_3299038_SNP [dm6]	A	G	2.350e^-4	0.863	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8506924	2L_8506924_SNP [dm3] 2L_8506924_SNP [dm6]	G	A	2.351e^-4	0.863	UPSTREAM Dh31 INTERGENIC
2R	14768472	2R_14768472_SNP [dm3] 2R_18880967_SNP [dm6]	G	A	2.361e^-4	0.863	INTRON sano
3R	23291390	3R_23291390_SNP [dm3] 3R_27465668_SNP [dm6]	G	A	2.366e^-4	0.863	NON_SYNONYMOUS_CODING CG13978
2L	9465709	2L_9465709_SNP [dm3] 2L_9465709_SNP [dm6]	A	G	2.367e^-4	0.863	INTERGENIC
3L	10803132	3L_10803132_SNP [dm3] 3L_10810032_SNP [dm6]	T	C	2.370e^-4	0.863	INTERGENIC
2L	18621368	2L_18621368_SNP [dm3] 2L_18621368_SNP [dm6]	C	T	2.371e^-4	0.863	INTRON MESR3	TF binding site mE1_TFBS_zfh1
2R	11268648	2R_11268648_SNP [dm3] 2R_15381143_SNP [dm6]	A	T	2.373e^-4	0.863	UPSTREAM SRPK & 1 other INTRON SRPK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10704121	2L_10704121_SNP [dm3] 2L_10704121_SNP [dm6]	A	T	2.374e^-4	0.863	INTRON Lip2 & 1 other
2R	17372876	2R_17372876_SNP [dm3] 2R_21485371_SNP [dm6]	T	C	2.378e^-4	0.863	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_HSA
2R	16425900	2R_16425900_SNP [dm3] 2R_20538395_SNP [dm6]	A	T	2.384e^-4	0.863	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2R	11879188	2R_11879188_SNP [dm3] 2R_15991683_SNP [dm6]	G	A	2.384e^-4	0.863	SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	13556507	3R_13556507_SNP [dm3] 3R_17730785_SNP [dm6]	A	G	2.389e^-4	0.863	SYNONYMOUS_CODING Lgr1
3R	23269918	3R_23269918_SNP [dm3] 3R_27444196_SNP [dm6]	G	C	2.405e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	2420674	3L_2420674_SNP [dm3] 3L_2420674_SNP [dm6]	A	G	2.406e^-4	0.863	INTRON CG45186
2R	12565608	2R_12565608_SNP [dm3] 2R_16678103_SNP [dm6]	T	C	2.411e^-4	0.863	INTRON CG30463
2R	14093832	2R_14093832_SNP [dm3] 2R_18206327_SNP [dm6]	G	C	2.413e^-4	0.863	INTERGENIC
3R	24826160	3R_24826160_SNP [dm3] 3R_29000438_SNP [dm6]	C	T	2.417e^-4	0.863	INTRON wat
2R	19524144	2R_19524144_SNP [dm3] 2R_23636621_SNP [dm6]	G	A	2.424e^-4	0.863	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8888943	2L_8888943_SNP [dm3] 2L_8888943_SNP [dm6]	G	A	2.426e^-4	0.863	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3L	2913800	3L_2913800_SNP [dm3] 3L_2913800_SNP [dm6]	C	T	2.433e^-4	0.863	INTRON Shab	TF binding site BDTNP1_TFBS_dl
3R	3455865	3R_3455865_SNP [dm3] 3R_7630143_SNP [dm6]	G	A	2.435e^-4	0.863	INTRON CG34127	TF binding site mE1_TFBS_inv
2L	7749184	2L_7749184_SNP [dm3] 2L_7749184_SNP [dm6]	T	G	2.442e^-4	0.863	INTERGENIC
2L	7002408	2L_7002408_SNP [dm3] 2L_7002408_SNP [dm6]	G	A	2.444e^-4	0.863	INTRON uif
2R	14571981	2R_14571981_SNP [dm3] 2R_18684476_SNP [dm6]	T	A	2.448e^-4	0.863	NON_SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other
2R	16978096	2R_16978096_SNP [dm3] 2R_21090591_SNP [dm6]	C	T	2.455e^-4	0.863	SYNONYMOUS_CODING Rbpn-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	13222027	X_13222027_SNP [dm3] X_13327994_SNP [dm6]	A	T	2.456e^-4	0.863	INTRON IP3K2
2L	7002288	2L_7002288_SNP [dm3] 2L_7002288_SNP [dm6]	G	A	2.460e^-4	0.863	INTRON uif
2L	22052288	2L_22052288_SNP [dm3] 2L_22052288_SNP [dm6]	A	G	2.468e^-4	0.863	INTERGENIC	transposable element FlyBase
2R	12425387	2R_12425387_DEL [dm3] 2R_16537882_DEL [dm6]	GAACACAG	G	2.470e^-4	0.863	DOWNSTREAM loopin-1 INTERGENIC
3L	3562847	3L_3562847_SNP [dm3] 3L_3562847_SNP [dm6]	A	G	2.474e^-4	0.863	INTRON Eip63E
3R	24122617	3R_24122617_SNP [dm3] 3R_28296895_SNP [dm6]	A	T	2.474e^-4	0.863	INTERGENIC
2R	20987505	2R_20987505_SNP [dm3] 2R_25099982_SNP [dm6]	C	T	2.478e^-4	0.863	UPSTREAM lov INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4093971	2L_4093971_SNP [dm3] 2L_4093971_SNP [dm6]	A	G	2.478e^-4	0.863	INTRON ed	TF binding site BDTNP1_TFBS_twi
2L	2635032	2L_2635032_SNP [dm3] 2L_2635032_SNP [dm6]	T	C	2.479e^-4	0.863	INTERGENIC
3R	26068716	3R_26068716_SNP [dm3] 3R_30242994_SNP [dm6]	C	T	2.483e^-4	0.863	SYNONYMOUS_CODING CG9737 DOWNSTREAM CG9733
2R	16113910	2R_16113910_DEL [dm3] 2R_20226405_DEL [dm6]	ACA	A	2.494e^-4	0.863	INTERGENIC
3L	11852048	3L_11852048_SNP [dm3] 3L_11858948_SNP [dm6]	T	A	2.495e^-4	0.863	INTRON CG44837
3L	17148410	3L_17148410_SNP [dm3] 3L_17155310_SNP [dm6]	C	T	2.497e^-4	0.863	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	12614586	2R_12614586_INS [dm3] 2R_16727081_INS [dm6]	T	TGTATT	2.500e^-4	0.863	INTRON CG30463	TF binding site mE1_TFBS_inv
X	13977697	X_13977697_SNP [dm3] X_14083664_SNP [dm6]	C	G	2.506e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5985743	3L_5985743_SNP [dm3] 3L_5992643_SNP [dm6]	T	C	2.508e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	2891446	3L_2891446_DEL [dm3] 3L_2891446_DEL [dm6]	AG	A	2.511e^-4	0.863	INTRON spz5
2R	3744663	2R_3744663_SNP [dm3] 2R_7857158_SNP [dm6]	A	T	2.521e^-4	0.863	INTRON Dgk	TF binding site mE1_TFBS_inv
3R	21625719	3R_21625719_SNP [dm3] 3R_25799997_SNP [dm6]	A	C	2.525e^-4	0.863	INTERGENIC
2L	8507624	2L_8507624_SNP [dm3] 2L_8507624_SNP [dm6]	A	G	2.537e^-4	0.863	UPSTREAM Dh31 INTERGENIC
2L	9510667	2L_9510667_SNP [dm3] 2L_9510667_SNP [dm6]	C	T	2.538e^-4	0.863	INTRON CG33298
3L	10919164	3L_10919164_SNP [dm3] 3L_10926064_SNP [dm6]	T	A	2.539e^-4	0.863	INTERGENIC
3R	23460878	3R_23460878_SNP [dm3] 3R_27635156_SNP [dm6]	C	T	2.539e^-4	0.863	DOWNSTREAM Tusp INTRON CG5611	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9880036	3R_9880036_SNP [dm3] 3R_14054314_SNP [dm6]	C	T	2.546e^-4	0.863	INTERGENIC
2R	13917987	2R_13917987_SNP [dm3] 2R_18030482_SNP [dm6]	A	T	2.547e^-4	0.863	INTERGENIC
2L	10767973	2L_10767973_SNP [dm3] 2L_10767973_SNP [dm6]	G	A	2.556e^-4	0.863	UTR_5_PRIME UbcD2 UPSTREAM UbcD2 DOWNSTREAM CG6724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	7749226	2L_7749226_SNP [dm3] 2L_7749226_SNP [dm6]	C	T	2.557e^-4	0.863	INTERGENIC
2L	8888879	2L_8888879_SNP [dm3] 2L_8888879_SNP [dm6]	C	T	2.557e^-4	0.863	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3R	21513430	3R_21513430_SNP [dm3] 3R_25687708_SNP [dm6]	T	C	2.563e^-4	0.863	UPSTREAM CLS INTERGENIC
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	2.571e^-4	0.863	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	5386168	2L_5386168_SNP [dm3] 2L_5386168_SNP [dm6]	C	T	2.573e^-4	0.863	INTERGENIC
3R	3665256	3R_3665256_SNP [dm3] 3R_7839534_SNP [dm6]	G	T	2.574e^-4	0.863	INTRON CG34384
2R	11880191	2R_11880191_SNP [dm3] 2R_15992686_SNP [dm6]	C	G	2.590e^-4	0.863	UTR_5_PRIME CG8320 UPSTREAM Pex11 DOWNSTREAM ATPCL	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24859607	3R_24859607_SNP [dm3] 3R_29033885_SNP [dm6]	T	A	2.591e^-4	0.863	NON_SYNONYMOUS_CODING beta4GalNAcTB UPSTREAM Cpsf100 EXON CR45044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6051770	2R_6051770_SNP [dm3] 2R_10164265_SNP [dm6]	G	T	2.593e^-4	0.863	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
2R	12242976	2R_12242976_SNP [dm3] 2R_16355471_SNP [dm6]	T	A	2.597e^-4	0.863	UPSTREAM CG30098 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13752642	3L_13752642_SNP [dm3] 3L_13759542_SNP [dm6]	A	G	2.598e^-4	0.863	INTRON bru-3
3L	5486791	3L_5486791_INS [dm3] 3L_5493691_INS [dm6]	A	AAA	2.610e^-4	0.863	EXON CR44520
X	5316097	X_5316097_SNP [dm3] X_5422064_SNP [dm6]	G	T	2.610e^-4	0.863	START_GAINED CG4165 UTR_5_PRIME CG4165 UPSTREAM CG4165 INTRON CG4165	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1297000	2L_1297000_SNP [dm3] 2L_1297000_SNP [dm6]	C	T	2.616e^-4	0.863	DOWNSTREAM robo3 INTERGENIC
3R	3698457	3R_3698457_SNP [dm3] 3R_7872735_SNP [dm6]	T	C	2.620e^-4	0.863	INTRON CG17816
2R	17919477	2R_17919477_SNP [dm3] 2R_22031972_SNP [dm6]	A	T	2.627e^-4	0.863	INTRON CG34370
2R	16123454	2R_16123454_SNP [dm3] 2R_20235949_SNP [dm6]	A	G	2.627e^-4	0.863	UPSTREAM CG11099 DOWNSTREAM CG44624 & 1 other INTERGENIC
3R	15854570	3R_15854570_SNP [dm3] 3R_20028848_SNP [dm6]	T	G	2.629e^-4	0.863	UPSTREAM CG4424 DOWNSTREAM trem INTRON CG4854	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	1354828	3L_1354828_SNP [dm3] 3L_1354828_SNP [dm6]	A	G	2.629e^-4	0.863	INTRON Ptp61F
2R	12078105	2R_12078105_SNP [dm3] 2R_16190600_SNP [dm6]	T	C	2.630e^-4	0.863	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12442430	2R_12442430_SNP [dm3] 2R_16554925_SNP [dm6]	C	A	2.633e^-4	0.863	INTRON Syn2
2R	1094500	2R_1094500_SNP [dm3] 2R_5206995_SNP [dm6]	T	G	2.637e^-4	0.863	INTRON Nipped-A	transposable element FlyBase
X	6743364	X_6743364_SNP [dm3] X_6849331_SNP [dm6]	G	A	2.643e^-4	0.863	SYNONYMOUS_CODING Cht11 UPSTREAM CG4558	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11437478	2L_11437478_SNP [dm3] 2L_11437478_SNP [dm6]	G	A	2.660e^-4	0.863	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23558059	3R_23558059_SNP [dm3] 3R_27732337_SNP [dm6]	G	A	2.664e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23274004	3R_23274004_SNP [dm3] 3R_27448282_SNP [dm6]	C	T	2.684e^-4	0.863	INTERGENIC
2L	1244868	2L_1244868_SNP [dm3] 2L_1244868_SNP [dm6]	C	T	2.685e^-4	0.863	INTERGENIC
2L	10704084	2L_10704084_SNP [dm3] 2L_10704084_SNP [dm6]	A	G	2.686e^-4	0.863	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2
2L	7298130	2L_7298130_SNP [dm3] 2L_7298130_SNP [dm6]	G	T	2.687e^-4	0.863	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	138690	X_138690_SNP [dm3] X_244657_SNP [dm6]	G	A	2.688e^-4	0.863	NON_SYNONYMOUS_CODING CG3038
3R	26019273	3R_26019273_SNP [dm3] 3R_30193551_SNP [dm6]	A	T	2.700e^-4	0.863	INTERGENIC
3L	7626054	3L_7626054_SNP [dm3] 3L_7632954_SNP [dm6]	G	A	2.706e^-4	0.863	UPSTREAM CG33275 INTRON CG33275
2R	13088765	2R_13088765_SNP [dm3] 2R_17201260_SNP [dm6]	A	T	2.714e^-4	0.863	INTERGENIC
2L	14950054	2L_14950054_SNP [dm3] 2L_14950054_SNP [dm6]	A	T	2.715e^-4	0.863	INTRON CG42313
2L	11934043	2L_11934043_SNP [dm3] 2L_11934043_SNP [dm6]	C	A	2.718e^-4	0.863	UPSTREAM Or33a INTERGENIC
2R	11423478	2R_11423478_SNP [dm3] 2R_15535973_SNP [dm6]	C	T	2.724e^-4	0.863	SYNONYMOUS_CODING CG30471	TF binding site BDTNP1_TFBS_sna mE1_TFBS_eve mE1_TFBS_HSA
2L	3523647	2L_3523647_SNP [dm3] 2L_3523647_SNP [dm6]	T	C	2.738e^-4	0.863	SYNONYMOUS_CODING Sr-CIV
2R	6894869	2R_6894869_SNP [dm3] 2R_11007364_SNP [dm6]	A	C	2.740e^-4	0.863	INTRON luna
2L	9845250	2L_9845250_SNP [dm3] 2L_9845250_SNP [dm6]	T	C	2.740e^-4	0.863	INTRON nAChRalpha6
3L	1251081	3L_1251081_SNP [dm3] 3L_1251081_SNP [dm6]	C	T	2.743e^-4	0.863	NON_SYNONYMOUS_CODING CG9129 UPSTREAM CG9130 & 1 other DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2L	5314245	2L_5314245_SNP [dm3] 2L_5314245_SNP [dm6]	C	T	2.749e^-4	0.863	INTRON CG14024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	2485355	2L_2485355_SNP [dm3] 2L_2485355_SNP [dm6]	A	G	2.749e^-4	0.863	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3L	5929651	3L_5929651_SNP [dm3] 3L_5936551_SNP [dm6]	T	A	2.761e^-4	0.863	INTRON CG33993
3L	4091153	3L_4091153_SNP [dm3] 3L_4091153_SNP [dm6]	C	G	2.770e^-4	0.863	UTR_3_PRIME CG14989 DOWNSTREAM CG14989
3R	8154298	3R_8154298_SNP [dm3] 3R_12328576_SNP [dm6]	G	T	2.774e^-4	0.863	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
3L	8677706	3L_8677706_SNP [dm3] 3L_8684606_SNP [dm6]	A	C	2.781e^-4	0.863	INTERGENIC
2R	7898025	2R_7898025_DEL [dm3] 2R_12010520_DEL [dm6]	ATGTGTA	A	2.782e^-4	0.863	INTRON otk	regulatory region REDfly_CRMs
3L	8278364	3L_8278364_SNP [dm3] 3L_8285264_SNP [dm6]	C	G	2.783e^-4	0.863	INTRON cert	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	11663068	X_11663068_DEL [dm3] X_11769035_DEL [dm6]	ATGAAA	A	2.788e^-4	0.863	UTR_3_PRIME m DOWNSTREAM dy
2L	1292071	2L_1292071_SNP [dm3] 2L_1292071_SNP [dm6]	C	A	2.792e^-4	0.863	INTRON robo3
2L	8081261	2L_8081261_SNP [dm3] 2L_8081261_SNP [dm6]	C	A	2.795e^-4	0.863	INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12243043	2R_12243043_SNP [dm3] 2R_16355538_SNP [dm6]	T	A	2.795e^-4	0.863	UPSTREAM CG30098 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11309282	3L_11309282_SNP [dm3] 3L_11316182_SNP [dm6]	A	G	2.799e^-4	0.863	EXON CR44361	TF binding site BDTNP1_TFBS_twi
2R	12032110	2R_12032110_SNP [dm3] 2R_16144605_SNP [dm6]	T	C	2.802e^-4	0.863	SYNONYMOUS_CODING Aats-cys
3L	4750527	3L_4750527_SNP [dm3] 3L_4750527_SNP [dm6]	T	G	2.805e^-4	0.863	INTRON RhoGEF64C
3L	10995498	3L_10995498_SNP [dm3] 3L_11002398_SNP [dm6]	T	C	2.812e^-4	0.863	UPSTREAM snoRNA:Me18S-G962 INTRON klu
3R	1020735	3R_1020735_SNP [dm3] 3R_5195013_SNP [dm6]	G	A	2.816e^-4	0.863	INTRON cno EXON snRNA:U4atac:82E
2R	14962022	2R_14962022_SNP [dm3] 2R_19074517_SNP [dm6]	T	C	2.828e^-4	0.863	INTRON 5-HT1A
3R	3729686	3R_3729686_SNP [dm3] 3R_7903964_SNP [dm6]	C	T	2.835e^-4	0.863	SYNONYMOUS_CODING CG2943	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	2.855e^-4	0.863	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
3R	16260976	3R_16260976_SNP [dm3] 3R_20435254_SNP [dm6]	G	C	2.858e^-4	0.863	INTRON Gfrl	TF binding site mE1_TFBS_inv
2L	14401731	2L_14401731_SNP [dm3] 2L_14401731_SNP [dm6]	T	A	2.862e^-4	0.863	INTRON elB
2R	6894839	2R_6894839_DEL [dm3] 2R_11007334_DEL [dm6]	TT	T	2.863e^-4	0.863	INTRON luna
3R	24233365	3R_24233365_INS [dm3] 3R_28407643_INS [dm6]	A	AGA	2.868e^-4	0.863	INTERGENIC
X	3808745	X_3808745_SNP [dm3] X_3914712_SNP [dm6]	A	T	2.873e^-4	0.863	INTRON CG42541
3R	19322334	3R_19322334_SNP [dm3] 3R_23496612_SNP [dm6]	A	T	2.877e^-4	0.863	INTERGENIC
3L	10156662	3L_10156662_SNP [dm3] 3L_10163562_SNP [dm6]	C	T	2.879e^-4	0.863	INTRON dpr10
3R	26389923	3R_26389923_SNP [dm3] 3R_30564201_SNP [dm6]	C	G	2.883e^-4	0.863	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	18665039	2L_18665039_DEL [dm3] 2L_18665039_DEL [dm6]	GCAAGCGACA	G	2.888e^-4	0.863	UPSTREAM CR42490 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14885806	3L_14885806_SNP [dm3] 3L_14892706_SNP [dm6]	A	C	2.890e^-4	0.863	INTERGENIC
2L	18385947	2L_18385947_SNP [dm3] 2L_18385947_SNP [dm6]	A	C	2.893e^-4	0.863	INTRON Fas3
2R	18807769	2R_18807769_SNP [dm3] 2R_22920246_SNP [dm6]	C	A	2.896e^-4	0.863	NON_SYNONYMOUS_CODING Nup214	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22956467	3R_22956467_SNP [dm3] 3R_27130745_SNP [dm6]	T	C	2.898e^-4	0.863	INTRON CG6051
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	2.907e^-4	0.863	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	2.907e^-4	0.863	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9550921	X_9550921_SNP [dm3] X_9656888_SNP [dm6]	C	T	2.915e^-4	0.863	INTRON l_1_G0232
2L	5957873	2L_5957873_INS [dm3] 2L_5957873_INS [dm6]	T	TGCTGTGGACAAGGT...	2.918e^-4	0.863	DOWNSTREAM Vm26Ac & 1 other INTERGENIC
2L	3470959	2L_3470959_SNP [dm3] 2L_3470959_SNP [dm6]	C	G	2.924e^-4	0.863	NON_SYNONYMOUS_CODING CG31776 UPSTREAM CG3238
3L	11056099	3L_11056099_SNP [dm3] 3L_11062999_SNP [dm6]	C	T	2.925e^-4	0.863	NON_SYNONYMOUS_CODING CG32075 UPSTREAM CG32069 DOWNSTREAM Blos2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	23498538	3R_23498538_SNP [dm3] 3R_27672816_SNP [dm6]	G	A	2.926e^-4	0.863	INTRON unc80	TF binding site mE1_TFBS_chinmo
2R	1318638	2R_1318638_SNP [dm3] 2R_5431133_SNP [dm6]	A	T	2.931e^-4	0.863	INTRON laccase2	transposable element FlyBase
2L	6044391	2L_6044391_INS [dm3] 2L_6044391_INS [dm6]	A	ACAA	2.933e^-4	0.863	INTRON ade2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	14754311	2R_14754311_SNP [dm3] 2R_18866806_SNP [dm6]	G	A	2.939e^-4	0.863	UPSTREAM DptB DOWNSTREAM Dpt INTERGENIC
3R	11315619	3R_11315619_SNP [dm3] 3R_15489897_SNP [dm6]	C	T	2.945e^-4	0.863	SYNONYMOUS_CODING CG5205	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7801422	2L_7801422_SNP [dm3] 2L_7801422_SNP [dm6]	C	T	2.947e^-4	0.863	NON_SYNONYMOUS_CODING r2d2 DOWNSTREAM cdc14
X	19278760	X_19278760_SNP [dm3] X_19384727_SNP [dm6]	A	C	2.948e^-4	0.863	INTRON kek5
3R	3799050	3R_3799050_SNP [dm3] 3R_7973328_SNP [dm6]	A	G	2.952e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	25817054	3R_25817054_SNP [dm3] 3R_29991332_SNP [dm6]	G	A	2.953e^-4	0.863	UTR_3_PRIME Acph-1 DOWNSTREAM CG7896	TF binding site mE1_TFBS_cad
2R	12425323	2R_12425323_SNP [dm3] 2R_16537818_SNP [dm6]	G	A	2.960e^-4	0.863	DOWNSTREAM loopin-1 INTERGENIC
2R	12488135	2R_12488135_SNP [dm3] 2R_16600630_SNP [dm6]	T	C	2.963e^-4	0.863	DOWNSTREAM CG5089 INTRON CG8303
2R	6894674	2R_6894674_SNP [dm3] 2R_11007169_SNP [dm6]	A	T	2.966e^-4	0.863	INTRON luna
2L	14207062	2L_14207062_SNP [dm3] 2L_14207062_SNP [dm6]	G	C	2.967e^-4	0.863	INTRON Dyrk2
2R	13049282	2R_13049282_SNP [dm3] 2R_17161777_SNP [dm6]	G	A	2.973e^-4	0.863	UPSTREAM CG30457 INTERGENIC
3L	18890877	3L_18890877_SNP [dm3] 3L_18897777_SNP [dm6]	T	C	2.995e^-4	0.863	INTRON CG3902
2L	15466181	2L_15466181_SNP [dm3] 2L_15466181_SNP [dm6]	T	C	2.999e^-4	0.863	INTERGENIC
2R	6894794	2R_6894794_SNP [dm3] 2R_11007289_SNP [dm6]	T	C	3.001e^-4	0.863	INTRON luna
X	5004720	X_5004720_SNP [dm3] X_5110687_SNP [dm6]	G	A	3.011e^-4	0.863	INTRON rg & 1 other
2R	10033946	2R_10033946_DEL [dm3] 2R_14146441_DEL [dm6]	CGC	C	3.013e^-4	0.863	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10034074	2R_10034074_SNP [dm3] 2R_14146569_SNP [dm6]	A	G	3.013e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	12248743	2R_12248743_SNP [dm3] 2R_16361238_SNP [dm6]	G	A	3.017e^-4	0.863	SYNONYMOUS_CODING CG6262 UPSTREAM CG6262
2R	11267280	2R_11267280_SNP [dm3] 2R_15379775_SNP [dm6]	A	G	3.020e^-4	0.863	SYNONYMOUS_CODING dup UPSTREAM SRPK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15329356	2R_15329356_SNP [dm3] 2R_19441851_SNP [dm6]	C	A	3.031e^-4	0.863	UTR_3_PRIME Spt5 UPSTREAM RpL11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	12384592	2L_12384592_SNP [dm3] 2L_12384592_SNP [dm6]	A	C	3.033e^-4	0.863	INTRON bru-2
3R	17650367	3R_17650367_SNP [dm3] 3R_21824645_SNP [dm6]	C	A	3.039e^-4	0.863	DOWNSTREAM CR45632 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	12421988	X_12421988_SNP [dm3] X_12527955_SNP [dm6]	A	C	3.040e^-4	0.863	INTRON CG43921
3L	2952439	3L_2952439_SNP [dm3] 3L_2952439_SNP [dm6]	T	C	3.042e^-4	0.863	UPSTREAM CG32846 INTRON Shab
2R	9184048	2R_9184048_DEL [dm3] 2R_13296543_DEL [dm6]	AA	A	3.042e^-4	0.863	UPSTREAM Dh31-R DOWNSTREAM CG4734 INTERGENIC
3L	2679532	3L_2679532_SNP [dm3] 3L_2679532_SNP [dm6]	G	T	3.042e^-4	0.863	INTRON Fife	TF binding site mE1_TFBS_chinmo
2L	11780691	2L_11780691_SNP [dm3] 2L_11780691_SNP [dm6]	C	T	3.045e^-4	0.863	INTERGENIC
2L	3292364	2L_3292364_SNP [dm3] 2L_3292364_SNP [dm6]	A	G	3.048e^-4	0.863	UTR_3_PRIME CG9664 INTRON CG9664	TF binding site mE1_TFBS_cad
2L	7455890	2L_7455890_SNP [dm3] 2L_7455890_SNP [dm6]	G	A	3.055e^-4	0.863	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10667348	2L_10667348_SNP [dm3] 2L_10667348_SNP [dm6]	C	T	3.055e^-4	0.863	INTRON CG31871
3L	3769915	3L_3769915_SNP [dm3] 3L_3769915_SNP [dm6]	C	A	3.063e^-4	0.863	INTRON CG32264
2R	12614562	2R_12614562_SNP [dm3] 2R_16727057_SNP [dm6]	T	C	3.064e^-4	0.863	INTRON CG30463	TF binding site mE1_TFBS_inv
3L	10516565	3L_10516565_SNP [dm3] 3L_10523465_SNP [dm6]	C	A	3.064e^-4	0.863	INTRON A2bp1
3L	1354785	3L_1354785_SNP [dm3] 3L_1354785_SNP [dm6]	A	G	3.067e^-4	0.863	INTRON Ptp61F
2R	12778370	2R_12778370_INS [dm3] 2R_16890865_INS [dm6]	T	TTTTTAGAG	3.069e^-4	0.863	INTRON CG8910	TF binding site BDTNP1_TFBS_dl
2L	1235884	2L_1235884_SNP [dm3] 2L_1235884_SNP [dm6]	A	T	3.070e^-4	0.863	INTERGENIC
3R	25834866	3R_25834866_SNP [dm3] 3R_30009144_SNP [dm6]	G	C	3.074e^-4	0.863	UTR_5_PRIME CG7912 INTRON Nlp
2R	11880074	2R_11880074_SNP [dm3] 2R_15992569_SNP [dm6]	C	T	3.079e^-4	0.863	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11267142	2R_11267142_SNP [dm3] 2R_15379637_SNP [dm6]	G	C	3.083e^-4	0.863	NON_SYNONYMOUS_CODING dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11267202	2R_11267202_MNP [dm3] 2R_15379697_MNP [dm6]	AAG	CCT	3.083e^-4	0.863	NON_SYNONYMOUS_CODING dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21787136	2L_21787136_SNP [dm3] 2L_21787136_SNP [dm6]	T	C	3.088e^-4	0.863	INTRON CG31612	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25806074	3R_25806074_SNP [dm3] 3R_29980352_SNP [dm6]	C	A	3.089e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	3793160	3R_3793160_SNP [dm3] 3R_7967438_SNP [dm6]	A	T	3.094e^-4	0.863	UPSTREAM dsx INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	5486829	3L_5486829_SNP [dm3] 3L_5493729_SNP [dm6]	C	T	3.100e^-4	0.863	EXON CR44520
2R	21002664	2R_21002664_SNP [dm3] 2R_25115141_SNP [dm6]	C	A	3.108e^-4	0.863	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	9740665	X_9740665_DEL [dm3] X_9846632_DEL [dm6]	ATGGCGACCAGCGAA...	A	3.109e^-4	0.863	INTRON CG32698
3R	25285022	3R_25285022_SNP [dm3] 3R_29459300_SNP [dm6]	T	C	3.111e^-4	0.863	UPSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	2167027	3L_2167027_SNP [dm3] 3L_2167027_SNP [dm6]	A	G	3.112e^-4	0.863	DOWNSTREAM CG15879 INTERGENIC
2R	12248644	2R_12248644_SNP [dm3] 2R_16361139_SNP [dm6]	A	G	3.117e^-4	0.863	SYNONYMOUS_CODING CG6262 UPSTREAM CG6262
2L	1429688	2L_1429688_SNP [dm3] 2L_1429688_SNP [dm6]	C	T	3.122e^-4	0.863	DOWNSTREAM CG43401 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17597848	2R_17597848_SNP [dm3] 2R_21710343_SNP [dm6]	T	A	3.128e^-4	0.863	SYNONYMOUS_CODING CG30403 UPSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_dl
X	18229910	X_18229910_SNP [dm3] X_18335877_SNP [dm6]	G	A	3.132e^-4	0.863	INTRON CG6123
2L	7455893	2L_7455893_SNP [dm3] 2L_7455893_SNP [dm6]	C	A	3.143e^-4	0.863	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4065126	X_4065126_DEL [dm3] X_4171093_DEL [dm6]	GG	G	3.146e^-4	0.863	INTRON Fas2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18544286	2R_18544286_SNP [dm3] 2R_22656781_SNP [dm6]	G	T	3.151e^-4	0.863	SYNONYMOUS_CODING CG43325 UTR_5_PRIME CG43326 UPSTREAM CG43326 DOWNSTREAM CR45268	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	9384896	3R_9384896_SNP [dm3] 3R_13559174_SNP [dm6]	C	T	3.165e^-4	0.863	INTERGENIC
3L	3099091	3L_3099091_SNP [dm3] 3L_3099091_SNP [dm6]	A	T	3.171e^-4	0.863	INTRON Cht7
2L	3330332	2L_3330332_SNP [dm3] 2L_3330332_SNP [dm6]	A	G	3.174e^-4	0.863	UPSTREAM CG3285 DOWNSTREAM CG33282 INTERGENIC
3L	8251575	3L_8251575_DEL [dm3] 3L_8258475_DEL [dm6]	AATAC	A	3.177e^-4	0.863	INTRON Dscam4
2R	6984836	2R_6984836_SNP [dm3] 2R_11097331_SNP [dm6]	A	G	3.177e^-4	0.863	INTRON luna
3L	966311	3L_966311_SNP [dm3] 3L_966311_SNP [dm6]	T	C	3.179e^-4	0.863	INTRON Glut1
3R	3771718	3R_3771718_SNP [dm3] 3R_7945996_SNP [dm6]	A	C	3.180e^-4	0.863	INTRON dsx
3R	24926626	3R_24926626_SNP [dm3] 3R_29100904_SNP [dm6]	A	T	3.186e^-4	0.863	NON_SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5919937	3L_5919937_SNP [dm3] 3L_5926837_SNP [dm6]	A	G	3.197e^-4	0.863	SPLICE_SITE_REGION Vap-33B UPSTREAM Vap-33B INTRON Vap-33B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13344452	2R_13344452_SNP [dm3] 2R_17456947_SNP [dm6]	A	G	3.198e^-4	0.863	SYNONYMOUS_CODING robl UPSTREAM robls54B & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
2R	15131659	2R_15131659_SNP [dm3] 2R_19244154_SNP [dm6]	A	G	3.202e^-4	0.863	DOWNSTREAM cora INTERGENIC
2L	13695954	2L_13695954_SNP [dm3] 2L_13695954_SNP [dm6]	C	T	3.203e^-4	0.863	INTRON CG31814
2R	15329432	2R_15329432_SNP [dm3] 2R_19441927_SNP [dm6]	G	A	3.204e^-4	0.863	UPSTREAM RpL11 DOWNSTREAM Spt5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	12261090	X_12261090_SNP [dm3] X_12367057_SNP [dm6]	C	G	3.206e^-4	0.863	INTERGENIC
2R	6938436	2R_6938436_SNP [dm3] 2R_11050931_SNP [dm6]	C	A	3.209e^-4	0.863	INTRON luna
2R	14765577	2R_14765577_SNP [dm3] 2R_18878072_SNP [dm6]	G	A	3.219e^-4	0.863	UPSTREAM sano INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15466197	2L_15466197_DEL [dm3] 2L_15466197_DEL [dm6]	ATTA	A	3.220e^-4	0.863	INTERGENIC
3R	7695325	3R_7695325_SNP [dm3] 3R_11869603_SNP [dm6]	G	A	3.238e^-4	0.863	UPSTREAM CG6959 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8241180	3L_8241180_INS [dm3] 3L_8248080_INS [dm6]	T	TATTAGATT	3.241e^-4	0.863	INTRON Dscam4
3R	10924226	3R_10924226_SNP [dm3] 3R_15098504_SNP [dm6]	G	A	3.242e^-4	0.863	SYNONYMOUS_CODING CG42788
3L	10145235	3L_10145235_SNP [dm3] 3L_10152135_SNP [dm6]	T	C	3.242e^-4	0.863	UPSTREAM snoRNA:MeU2-A31 INTRON dpr10 & 1 other
3R	9366068	3R_9366068_SNP [dm3] 3R_13540346_SNP [dm6]	T	G	3.250e^-4	0.863	INTERGENIC
2L	4734214	2L_4734214_SNP [dm3] 2L_4734214_SNP [dm6]	G	C	3.250e^-4	0.863	NON_SYNONYMOUS_CODING CG15631 DOWNSTREAM CG15630
3L	18959424	3L_18959424_INS [dm3] 3L_18966324_INS [dm6]	C	CAGTCCACTTTGAGCTGAAA...	3.253e^-4	0.863	INTERGENIC
3L	16969576	3L_16969576_SNP [dm3] 3L_16976476_SNP [dm6]	G	A	3.266e^-4	0.863	UTR_5_PRIME Exn INTRON Exn
3L	14189660	3L_14189660_SNP [dm3] 3L_14196560_SNP [dm6]	T	C	3.271e^-4	0.863	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13945335	3R_13945335_SNP [dm3] 3R_18119613_SNP [dm6]	T	A	3.272e^-4	0.863	INTRON sr
3R	16899149	3R_16899149_SNP [dm3] 3R_21073427_SNP [dm6]	C	T	3.285e^-4	0.863	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
X	13977609	X_13977609_SNP [dm3] X_14083576_SNP [dm6]	G	A	3.286e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12242979	2R_12242979_SNP [dm3] 2R_16355474_SNP [dm6]	C	T	3.287e^-4	0.863	UPSTREAM CG30098 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18015452	2R_18015452_SNP [dm3] 2R_22127947_SNP [dm6]	A	G	3.294e^-4	0.863	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad
2L	5480111	2L_5480111_SNP [dm3] 2L_5480111_SNP [dm6]	C	A	3.296e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	16281345	2R_16281345_SNP [dm3] 2R_20393840_SNP [dm6]	T	G	3.304e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10802177	2R_10802177_SNP [dm3] 2R_14914672_SNP [dm6]	T	G	3.305e^-4	0.863	INTRON CG10249
2L	15863687	2L_15863687_SNP [dm3] 2L_15863687_SNP [dm6]	T	C	3.313e^-4	0.863	DOWNSTREAM CR42791 INTERGENIC
2R	5786639	2R_5786639_DEL [dm3] 2R_9899134_DEL [dm6]	TT	T	3.320e^-4	0.863	UTR_3_PRIME CG1441 DOWNSTREAM CG30007	TF binding site mE1_TFBS_cad
3R	24824602	3R_24824602_SNP [dm3] 3R_28998880_SNP [dm6]	T	C	3.324e^-4	0.863	INTRON wat
2R	18013795	2R_18013795_SNP [dm3] 2R_22126290_SNP [dm6]	A	G	3.327e^-4	0.863	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad
2R	11736234	2R_11736234_SNP [dm3] 2R_15848729_SNP [dm6]	C	T	3.328e^-4	0.863	UTR_5_PRIME tun
2R	15707721	2R_15707721_SNP [dm3] 2R_19820216_SNP [dm6]	A	G	3.333e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
3R	10310223	3R_10310223_SNP [dm3] 3R_14484501_SNP [dm6]	C	T	3.337e^-4	0.863	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	12422010	X_12422010_SNP [dm3] X_12527977_SNP [dm6]	C	T	3.339e^-4	0.863	INTRON CG43921
3R	23469408	3R_23469408_SNP [dm3] 3R_27643686_SNP [dm6]	T	G	3.340e^-4	0.863	INTRON tau
2L	3449245	2L_3449245_SNP [dm3] 2L_3449245_SNP [dm6]	T	C	3.342e^-4	0.863	UPSTREAM Snx1 INTERGENIC
2L	1297014	2L_1297014_SNP [dm3] 2L_1297014_SNP [dm6]	G	T	3.342e^-4	0.863	DOWNSTREAM robo3 INTERGENIC
3L	3915368	3L_3915368_SNP [dm3] 3L_3915368_SNP [dm6]	T	C	3.349e^-4	0.863	INTRON Eip63F-1
2R	18458898	2R_18458898_SNP [dm3] 2R_22571393_SNP [dm6]	T	C	3.349e^-4	0.863	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5929628	2L_5929628_SNP [dm3] 2L_5929628_SNP [dm6]	A	G	3.356e^-4	0.863	INTRON dsf
3L	5063371	3L_5063371_SNP [dm3] 3L_5063371_SNP [dm6]	G	A	3.367e^-4	0.863	INTRON Con
3L	6131049	3L_6131049_SNP [dm3] 3L_6137949_SNP [dm6]	G	T	3.369e^-4	0.863	INTRON Lcp65Ae
2L	7431719	2L_7431719_SNP [dm3] 2L_7431719_SNP [dm6]	G	C	3.374e^-4	0.863	INTRON CG5958
2R	12242952	2R_12242952_SNP [dm3] 2R_16355447_SNP [dm6]	A	T	3.379e^-4	0.863	UPSTREAM CG30098 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6651486	X_6651486_SNP [dm3] X_6757453_SNP [dm6]	G	C	3.381e^-4	0.863	INTRON CG14438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	15768636	2R_15768636_SNP [dm3] 2R_19881131_SNP [dm6]	C	A	3.383e^-4	0.863	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	9853408	3R_9853408_SNP [dm3] 3R_14027686_SNP [dm6]	T	G	3.385e^-4	0.863	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2R	4507938	2R_4507938_SNP [dm3] 2R_8620433_SNP [dm6]	T	A	3.391e^-4	0.863	DOWNSTREAM Cirl INTRON Cirl	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3L	5985816	3L_5985816_SNP [dm3] 3L_5992716_SNP [dm6]	G	A	3.398e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	17399650	3R_17399650_SNP [dm3] 3R_21573928_SNP [dm6]	T	C	3.406e^-4	0.863	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22703801	3R_22703801_SNP [dm3] 3R_26878079_SNP [dm6]	A	G	3.408e^-4	0.863	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_HSA
3L	10145232	3L_10145232_SNP [dm3] 3L_10152132_SNP [dm6]	C	T	3.409e^-4	0.863	UPSTREAM snoRNA:MeU2-A31 INTRON dpr10 & 1 other
3R	8213155	3R_8213155_SNP [dm3] 3R_12387433_SNP [dm6]	G	T	3.411e^-4	0.863	UPSTREAM CG33098 INTRON CG34402 & 1 other
3R	24826166	3R_24826166_SNP [dm3] 3R_29000444_SNP [dm6]	G	A	3.414e^-4	0.863	INTRON wat
X	11415614	X_11415614_INS [dm3] X_11521581_INS [dm6]	T	TAGGCCTATAGG...	3.418e^-4	0.863	INTRON Drak	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13477603	2R_13477603_SNP [dm3] 2R_17590098_SNP [dm6]	G	A	3.426e^-4	0.863	SYNONYMOUS_CODING RhoGAP54D UPSTREAM icln	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	17464959	2R_17464959_SNP [dm3] 2R_21577454_SNP [dm6]	A	C	3.428e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12712619	2R_12712619_SNP [dm3] 2R_16825114_SNP [dm6]	A	T	3.428e^-4	0.863	UTR_5_PRIME CG34459 UPSTREAM CG34459 INTRON CG34459
2L	3891257	2L_3891257_SNP [dm3] 2L_3891257_SNP [dm6]	G	A	3.432e^-4	0.863	INTRON capu
3L	6719301	3L_6719301_SNP [dm3] 3L_6726201_SNP [dm6]	G	A	3.437e^-4	0.863	UPSTREAM CR44523 INTERGENIC
3R	21510432	3R_21510432_SNP [dm3] 3R_25684710_SNP [dm6]	G	C	3.444e^-4	0.863	DOWNSTREAM CG5028 & 1 other INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3L	4736552	3L_4736552_SNP [dm3] 3L_4736552_SNP [dm6]	C	A	3.445e^-4	0.863	INTRON RhoGEF64C
3R	10267202	3R_10267202_SNP [dm3] 3R_14441480_SNP [dm6]	C	G	3.445e^-4	0.863	INTRON cv-c
3L	12050044	3L_12050044_SNP [dm3] 3L_12056944_SNP [dm6]	A	G	3.453e^-4	0.863	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20508781	3R_20508781_SNP [dm3] 3R_24683059_SNP [dm6]	A	C	3.458e^-4	0.864	INTRON slo
3R	9697894	3R_9697894_SNP [dm3] 3R_13872172_SNP [dm6]	G	A	3.476e^-4	0.866	INTRON E5
2L	8888765	2L_8888765_SNP [dm3] 2L_8888765_SNP [dm6]	A	T	3.477e^-4	0.866	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	19659897	3R_19659897_SNP [dm3] 3R_23834175_SNP [dm6]	A	C	3.482e^-4	0.866	INTRON CG34355
2R	12242960	2R_12242960_SNP [dm3] 2R_16355455_SNP [dm6]	G	T	3.491e^-4	0.867	UPSTREAM CG30098 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19937617	3L_19937617_SNP [dm3] 3L_19944517_SNP [dm6]	C	T	3.497e^-4	0.868	INTRON Ac76E
2R	12778360	2R_12778360_SNP [dm3] 2R_16890855_SNP [dm6]	A	G	3.502e^-4	0.868	INTRON CG8910	TF binding site BDTNP1_TFBS_dl
3R	25820193	3R_25820193_SNP [dm3] 3R_29994471_SNP [dm6]	G	A	3.516e^-4	0.869	SYNONYMOUS_CODING CG7903 UPSTREAM Sas-6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	12261543	X_12261543_SNP [dm3] X_12367510_SNP [dm6]	G	A	3.518e^-4	0.869	INTERGENIC
3R	14771492	3R_14771492_SNP [dm3] 3R_18945770_SNP [dm6]	G	A	3.521e^-4	0.869	INTRON CG42613
2L	1238719	2L_1238719_SNP [dm3] 2L_1238719_SNP [dm6]	A	C	3.535e^-4	0.87	INTERGENIC
3R	3813050	3R_3813050_SNP [dm3] 3R_7987328_SNP [dm6]	C	A	3.540e^-4	0.87	INTRON CG2781
2R	6914661	2R_6914661_SNP [dm3] 2R_11027156_SNP [dm6]	T	G	3.554e^-4	0.87	INTRON luna
2R	13565751	2R_13565751_SNP [dm3] 2R_17678246_SNP [dm6]	T	G	3.560e^-4	0.87	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9186852	X_9186852_SNP [dm3] X_9292819_SNP [dm6]	G	C	3.563e^-4	0.87	INTRON lz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	3.569e^-4	0.87	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	2538862	2L_2538862_SNP [dm3] 2L_2538862_SNP [dm6]	A	G	3.570e^-4	0.87	INTERGENIC
2L	2538874	2L_2538874_SNP [dm3] 2L_2538874_SNP [dm6]	A	T	3.570e^-4	0.87	INTERGENIC
3R	24826204	3R_24826204_SNP [dm3] 3R_29000482_SNP [dm6]	T	C	3.570e^-4	0.87	INTRON wat
X	7300948	X_7300948_SNP [dm3] X_7406915_SNP [dm6]	T	G	3.572e^-4	0.87	UPSTREAM CG32727 INTERGENIC
3R	3809668	3R_3809668_SNP [dm3] 3R_7983946_SNP [dm6]	A	T	3.588e^-4	0.872	INTRON CG2781
3L	14888956	3L_14888956_SNP [dm3] 3L_14895856_SNP [dm6]	A	G	3.588e^-4	0.872	INTERGENIC
2L	7802306	2L_7802306_SNP [dm3] 2L_7802306_SNP [dm6]	G	A	3.598e^-4	0.872	UTR_3_PRIME cdc14 DOWNSTREAM cdc14 & 1 other
2R	6051800	2R_6051800_SNP [dm3] 2R_10164295_SNP [dm6]	C	T	3.599e^-4	0.872	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
2R	9494021	2R_9494021_SNP [dm3] 2R_13606516_SNP [dm6]	T	C	3.603e^-4	0.872	UPSTREAM CG34236 INTERGENIC
3R	21513475	3R_21513475_SNP [dm3] 3R_25687753_SNP [dm6]	T	G	3.609e^-4	0.872	UPSTREAM CLS INTERGENIC
3R	26019271	3R_26019271_SNP [dm3] 3R_30193549_SNP [dm6]	T	C	3.624e^-4	0.874	INTERGENIC
2R	6054523	2R_6054523_SNP [dm3] 2R_10167018_SNP [dm6]	A	G	3.632e^-4	0.874	INTRON KCNQ
2R	14770128	2R_14770128_SNP [dm3] 2R_18882623_SNP [dm6]	A	C	3.634e^-4	0.874	INTRON sano
2R	6058176	2R_6058176_SNP [dm3] 2R_10170671_SNP [dm6]	T	C	3.637e^-4	0.874	INTRON KCNQ
2R	12251727	2R_12251727_SNP [dm3] 2R_16364222_SNP [dm6]	A	G	3.638e^-4	0.874	UTR_5_PRIME CG15711 DOWNSTREAM CG6262
2R	9715706	2R_9715706_SNP [dm3] 2R_13828201_SNP [dm6]	G	C	3.654e^-4	0.876	INTRON CG6329	TF binding site BDTNP1_TFBS_dl
3L	673723	3L_673723_SNP [dm3] 3L_673723_SNP [dm6]	A	G	3.663e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2L	8888967	2L_8888967_SNP [dm3] 2L_8888967_SNP [dm6]	T	A	3.666e^-4	0.877	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
X	4842720	X_4842720_SNP [dm3] X_4948687_SNP [dm6]	A	T	3.677e^-4	0.879	INTRON Ptp4E
2L	11423743	2L_11423743_SNP [dm3] 2L_11423743_SNP [dm6]	A	G	3.686e^-4	0.88	INTERGENIC
2L	12947724	2L_12947724_SNP [dm3] 2L_12947724_SNP [dm6]	G	C	3.696e^-4	0.881	INTERGENIC
2R	12940125	2R_12940125_SNP [dm3] 2R_17052620_SNP [dm6]	A	C	3.715e^-4	0.881	NON_SYNONYMOUS_CODING CG9646 INTRON CG9646	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14546035	X_14546035_INS [dm3] X_14652002_INS [dm6]	T	TT	3.722e^-4	0.881	INTRON NetA	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	6131053	3L_6131053_SNP [dm3] 3L_6137953_SNP [dm6]	A	C	3.724e^-4	0.881	INTRON Lcp65Ae
3L	6131054	3L_6131054_SNP [dm3] 3L_6137954_SNP [dm6]	C	A	3.724e^-4	0.881	INTRON Lcp65Ae
3R	21510290	3R_21510290_SNP [dm3] 3R_25684568_SNP [dm6]	T	A	3.742e^-4	0.881	DOWNSTREAM CG5028 & 1 other INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	14795453	2R_14795453_SNP [dm3] 2R_18907948_SNP [dm6]	C	T	3.747e^-4	0.881	INTRON sano
3L	16347360	3L_16347360_SNP [dm3] 3L_16354260_SNP [dm6]	G	A	3.749e^-4	0.881	NON_SYNONYMOUS_CODING Pdh UTR_5_PRIME Pdh DOWNSTREAM CG4933 & 1 other
3R	7695330	3R_7695330_SNP [dm3] 3R_11869608_SNP [dm6]	T	G	3.754e^-4	0.881	UPSTREAM CG6959 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23469487	3R_23469487_SNP [dm3] 3R_27643765_SNP [dm6]	T	A	3.759e^-4	0.881	INTRON tau
2L	5929629	2L_5929629_SNP [dm3] 2L_5929629_SNP [dm6]	T	A	3.760e^-4	0.881	INTRON dsf
3L	9337128	3L_9337128_SNP [dm3] 3L_9344028_SNP [dm6]	A	C	3.760e^-4	0.881	UPSTREAM PGRP-LC INTRON PGRP-LC
2R	12940114	2R_12940114_DEL [dm3] 2R_17052609_DEL [dm6]	GGACAAG	G	3.764e^-4	0.881	CODON_DELETION CG9646 INTRON CG9646	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2757730	X_2757730_SNP [dm3] X_2863697_SNP [dm6]	T	A	3.765e^-4	0.881	INTRON kirre
3L	2167020	3L_2167020_SNP [dm3] 3L_2167020_SNP [dm6]	A	G	3.775e^-4	0.881	DOWNSTREAM CG15879 INTERGENIC
2L	8888907	2L_8888907_SNP [dm3] 2L_8888907_SNP [dm6]	A	G	3.779e^-4	0.881	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3L	16583798	3L_16583798_SNP [dm3] 3L_16590698_SNP [dm6]	C	T	3.782e^-4	0.881	NON_SYNONYMOUS_CODING tra UTR_3_PRIME tra DOWNSTREAM l_3_73Ah & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	17464965	2R_17464965_DEL [dm3] 2R_21577460_DEL [dm6]	AA	A	3.784e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2485305	2L_2485305_SNP [dm3] 2L_2485305_SNP [dm6]	G	C	3.784e^-4	0.881	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	14762239	2R_14762239_SNP [dm3] 2R_18874734_SNP [dm6]	C	T	3.794e^-4	0.881	INTERGENIC
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	3.802e^-4	0.881	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21187413	3R_21187413_DEL [dm3] 3R_25361691_DEL [dm6]	ATACT	G	3.827e^-4	0.881	INTRON Fur1
2L	4626736	2L_4626736_SNP [dm3] 2L_4626736_SNP [dm6]	G	A	3.827e^-4	0.881	INTERGENIC
2L	8888880	2L_8888880_DEL [dm3] 2L_8888880_DEL [dm6]	CCCTCAAAATCCTTATAAAG...	C	3.863e^-4	0.881	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	8888986	2L_8888986_SNP [dm3] 2L_8888986_SNP [dm6]	A	T	3.863e^-4	0.881	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3R	21510268	3R_21510268_SNP [dm3] 3R_25684546_SNP [dm6]	A	T	3.865e^-4	0.881	DOWNSTREAM CG5028 & 1 other INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	19073902	3R_19073902_SNP [dm3] 3R_23248180_SNP [dm6]	G	A	3.871e^-4	0.881	INTRON CG4467	TF binding site mE1_TFBS_Trl
2L	10047135	2L_10047135_SNP [dm3] 2L_10047135_SNP [dm6]	A	G	3.875e^-4	0.881	INTERGENIC
2R	17494948	2R_17494948_SNP [dm3] 2R_21607443_SNP [dm6]	C	T	3.878e^-4	0.881	UPSTREAM CR43243 & 1 other DOWNSTREAM CG15673 INTRON CG10433	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9301964	3L_9301964_SNP [dm3] 3L_9308864_SNP [dm6]	A	C	3.883e^-4	0.881	INTERGENIC
2L	12305875	2L_12305875_SNP [dm3] 2L_12305875_SNP [dm6]	A	G	3.885e^-4	0.881	INTRON aret
2L	14008221	2L_14008221_SNP [dm3] 2L_14008221_SNP [dm6]	G	T	3.886e^-4	0.881	NON_SYNONYMOUS_CODING CG42692
2R	12242973	2R_12242973_SNP [dm3] 2R_16355468_SNP [dm6]	C	G	3.897e^-4	0.881	UPSTREAM CG30098 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17495688	2R_17495688_SNP [dm3] 2R_21608183_SNP [dm6]	T	G	3.898e^-4	0.881	UPSTREAM CG10433 DOWNSTREAM CG15673 INTRON CR43243
2R	18035787	2R_18035787_SNP [dm3] 2R_22148282_SNP [dm6]	C	T	3.909e^-4	0.881	INTRON a
2L	8888984	2L_8888984_SNP [dm3] 2L_8888984_SNP [dm6]	A	C	3.923e^-4	0.881	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2R	12304610	2R_12304610_SNP [dm3] 2R_16417105_SNP [dm6]	A	T	3.926e^-4	0.881	UTR_5_PRIME Menl-2 UTR_3_PRIME Menl-1 INTRON Sema-2b
2L	1291983	2L_1291983_SNP [dm3] 2L_1291983_SNP [dm6]	C	A	3.926e^-4	0.881	INTRON robo3
3R	21187402	3R_21187402_INS [dm3] 3R_25361680_INS [dm6]	A	ATA	3.930e^-4	0.881	INTRON Fur1
2R	18261781	2R_18261781_SNP [dm3] 2R_22374276_SNP [dm6]	A	G	3.935e^-4	0.881	UPSTREAM Rtf1 INTRON CR44759	TF binding site BDTNP1_TFBS_dl
2R	12954719	2R_12954719_SNP [dm3] 2R_17067214_SNP [dm6]	T	C	3.951e^-4	0.881	SYNONYMOUS_CODING CG30460 DOWNSTREAM CG6967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8397420	3L_8397420_SNP [dm3] 3L_8404320_SNP [dm6]	G	C	3.982e^-4	0.881	NON_SYNONYMOUS_CODING mkg-p UTR_3_PRIME CG33057	TF binding site mE1_TFBS_sens
2L	11243530	2L_11243530_SNP [dm3] 2L_11243530_SNP [dm6]	T	A	3.983e^-4	0.881	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8762409	2L_8762409_INS [dm3] 2L_8762409_INS [dm6]	T	TAGTAAATAGTATAGTATAG...	3.991e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_cad
3R	20766473	3R_20766473_SNP [dm3] 3R_24940751_SNP [dm6]	A	G	3.992e^-4	0.881	SYNONYMOUS_CODING ssh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5775771	3L_5775771_SNP [dm3] 3L_5782671_SNP [dm6]	C	G	3.993e^-4	0.881	NON_SYNONYMOUS_CODING PGRP-LD SPLICE_SITE_REGION PGRP-LD & 1 other UTR_3_PRIME Pmi DOWNSTREAM Cralbp	TF binding site mE1_TFBS_cad
2R	13184459	2R_13184459_SNP [dm3] 2R_17296954_SNP [dm6]	G	C	3.996e^-4	0.881	INTRON mbl
2R	18568420	2R_18568420_SNP [dm3] 2R_22680915_SNP [dm6]	A	T	3.999e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	3720901	3R_3720901_SNP [dm3] 3R_7895179_SNP [dm6]	T	A	4.004e^-4	0.881	UPSTREAM wtrw INTRON mRpS9 & 1 other
2R	21011518	2R_21011518_INS [dm3] 2R_25123995_INS [dm6]	C	CACGCCTCAGCAAC...	4.007e^-4	0.881	INTRON lov
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	4.008e^-4	0.881	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7584138	2L_7584138_SNP [dm3] 2L_7584138_SNP [dm6]	A	G	4.011e^-4	0.881	DOWNSTREAM Spn28B INTERGENIC
3L	17820413	3L_17820413_SNP [dm3] 3L_17827313_SNP [dm6]	T	A	4.021e^-4	0.881	INTRON Grd
2R	15419381	2R_15419381_SNP [dm3] 2R_19531876_SNP [dm6]	T	A	4.033e^-4	0.881	INTRON sm
3R	16770674	3R_16770674_SNP [dm3] 3R_20944952_SNP [dm6]	C	A	4.041e^-4	0.881	INTRON CG31191
2L	14008206	2L_14008206_SNP [dm3] 2L_14008206_SNP [dm6]	G	A	4.042e^-4	0.881	SYNONYMOUS_CODING CG42692
X	11352197	X_11352197_SNP [dm3] X_11458164_SNP [dm6]	A	C	4.043e^-4	0.881	INTRON HP5
3R	25562519	3R_25562519_SNP [dm3] 3R_29736797_SNP [dm6]	T	A	4.043e^-4	0.881	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25562521	3R_25562521_SNP [dm3] 3R_29736799_SNP [dm6]	A	T	4.043e^-4	0.881	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	9465089	2L_9465089_SNP [dm3] 2L_9465089_SNP [dm6]	C	A	4.054e^-4	0.881	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
3R	3807714	3R_3807714_SNP [dm3] 3R_7981992_SNP [dm6]	C	T	4.054e^-4	0.881	UTR_3_PRIME CG2781	TF binding site mE1_TFBS_bab1
3R	23276953	3R_23276953_SNP [dm3] 3R_27451231_SNP [dm6]	G	T	4.056e^-4	0.881	INTERGENIC
2R	12664432	2R_12664432_SNP [dm3] 2R_16776927_SNP [dm6]	A	G	4.059e^-4	0.881	INTERGENIC
3R	26019261	3R_26019261_SNP [dm3] 3R_30193539_SNP [dm6]	G	A	4.063e^-4	0.881	INTERGENIC
X	11554952	X_11554952_DEL [dm3] X_11660919_DEL [dm6]	CTTTATTATGTGTATTTCGA...	C	4.070e^-4	0.881	INTRON Ptp10D
2R	2721010	2R_2721010_SNP [dm3] 2R_6833505_SNP [dm6]	A	G	4.071e^-4	0.881	INTRON CG15236	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12778374	2R_12778374_SNP [dm3] 2R_16890869_SNP [dm6]	T	G	4.076e^-4	0.881	INTRON CG8910	TF binding site BDTNP1_TFBS_dl
X	19112912	X_19112912_INS [dm3] X_19218879_INS [dm6]	A	ATTA	4.079e^-4	0.881	INTERGENIC
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	4.086e^-4	0.881	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10257257	X_10257257_SNP [dm3] X_10363224_SNP [dm6]	A	G	4.096e^-4	0.881	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15040567	2R_15040567_SNP [dm3] 2R_19153062_SNP [dm6]	T	C	4.099e^-4	0.881	INTRON ena
2L	8888944	2L_8888944_DEL [dm3] 2L_8888944_DEL [dm6]	CAT	C	4.109e^-4	0.881	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3R	8212894	3R_8212894_SNP [dm3] 3R_12387172_SNP [dm6]	A	C	4.116e^-4	0.881	UPSTREAM CG33098 INTRON CG34402
2L	14085878	2L_14085878_SNP [dm3] 2L_14085878_SNP [dm6]	G	A	4.121e^-4	0.881	INTRON nAChRalpha5
2R	9186948	2R_9186948_SNP [dm3] 2R_13299443_SNP [dm6]	C	T	4.123e^-4	0.881	START_GAINED CG17047 UTR_5_PRIME CG17047 UPSTREAM CG4734 & 1 other
2R	19532649	2R_19532649_SNP [dm3] 2R_23645126_SNP [dm6]	T	C	4.124e^-4	0.881	INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20423664	2L_20423664_SNP [dm3] 2L_20423664_SNP [dm6]	G	A	4.128e^-4	0.881	DOWNSTREAM Arpc2 INTRON CG15130
3R	24826189	3R_24826189_SNP [dm3] 3R_29000467_SNP [dm6]	T	C	4.130e^-4	0.881	INTRON wat
2L	15104611	2L_15104611_INS [dm3] 2L_15104611_INS [dm6]	C	CCAAC	4.133e^-4	0.881	INTERGENIC
2R	14489080	2R_14489080_SNP [dm3] 2R_18601575_SNP [dm6]	A	C	4.141e^-4	0.881	INTRON GEFmeso
3R	26020098	3R_26020098_SNP [dm3] 3R_30194376_SNP [dm6]	A	C	4.143e^-4	0.881	DOWNSTREAM CG15531 INTERGENIC
3R	22193961	3R_22193961_SNP [dm3] 3R_26368239_SNP [dm6]	A	C	4.145e^-4	0.881	INTERGENIC
3R	3716577	3R_3716577_SNP [dm3] 3R_7890855_SNP [dm6]	C	G	4.147e^-4	0.881	UPSTREAM wtrw DOWNSTREAM CG10092 INTRON mRpS9
3L	13245599	3L_13245599_SNP [dm3] 3L_13252499_SNP [dm6]	G	A	4.149e^-4	0.881	INTRON caps
3L	3103485	3L_3103485_SNP [dm3] 3L_3103485_SNP [dm6]	C	A	4.155e^-4	0.881	INTRON Cht7
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	4.157e^-4	0.881	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1344292	2L_1344292_SNP [dm3] 2L_1344292_SNP [dm6]	T	G	4.161e^-4	0.881	UPSTREAM Cdlc2 & 1 other INTERGENIC
3L	11596975	3L_11596975_SNP [dm3] 3L_11603875_SNP [dm6]	T	C	4.163e^-4	0.881	SYNONYMOUS_CODING CG7368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10541510	X_10541510_SNP [dm3] X_10647477_SNP [dm6]	T	C	4.165e^-4	0.881	INTRON X11Lbeta
2R	17494960	2R_17494960_SNP [dm3] 2R_21607455_SNP [dm6]	G	T	4.177e^-4	0.881	UPSTREAM CR43243 & 1 other DOWNSTREAM CG15673 INTRON CG10433	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22965829	3R_22965829_SNP [dm3] 3R_27140107_SNP [dm6]	C	T	4.186e^-4	0.881	INTRON CG6051	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12853844	2R_12853844_SNP [dm3] 2R_16966339_SNP [dm6]	T	C	4.187e^-4	0.881	INTERGENIC
2R	18361239	2R_18361239_SNP [dm3] 2R_22473734_SNP [dm6]	G	A	4.188e^-4	0.881	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19194035	X_19194035_SNP [dm3] X_19300002_SNP [dm6]	T	G	4.198e^-4	0.881	INTERGENIC
3L	2854410	3L_2854410_SNP [dm3] 3L_2854410_SNP [dm6]	C	T	4.199e^-4	0.881	INTRON CG43444
2R	9138987	2R_9138987_DEL [dm3] 2R_13251482_DEL [dm6]	GCTTCGT	G	4.205e^-4	0.881	DOWNSTREAM CG4714
2L	1238487	2L_1238487_SNP [dm3] 2L_1238487_SNP [dm6]	T	G	4.207e^-4	0.881	INTERGENIC
X	8498779	X_8498779_SNP [dm3] X_8604746_SNP [dm6]	G	A	4.213e^-4	0.881	SYNONYMOUS_CODING Caf1-180
3L	6395533	3L_6395533_SNP [dm3] 3L_6402433_SNP [dm6]	G	A	4.220e^-4	0.881	INTRON CG42747
3R	19694431	3R_19694431_SNP [dm3] 3R_23868709_SNP [dm6]	A	T	4.232e^-4	0.881	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1253129	3L_1253129_SNP [dm3] 3L_1253129_SNP [dm6]	T	G	4.239e^-4	0.881	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5376944	2L_5376944_SNP [dm3] 2L_5376944_SNP [dm6]	G	A	4.245e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6282836	3L_6282836_SNP [dm3] 3L_6289736_SNP [dm6]	G	T	4.245e^-4	0.881	INTERGENIC
2R	6054859	2R_6054859_SNP [dm3] 2R_10167354_SNP [dm6]	G	T	4.255e^-4	0.881	INTRON KCNQ
2L	12462115	2L_12462115_SNP [dm3] 2L_12462115_SNP [dm6]	A	G	4.259e^-4	0.881	UPSTREAM bun INTRON bun	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	820886	3R_820886_SNP [dm3] 3R_4995164_SNP [dm6]	G	C	4.260e^-4	0.881	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	16191675	2L_16191675_SNP [dm3] 2L_16191675_SNP [dm6]	C	T	4.266e^-4	0.881	INTERGENIC
2L	16191683	2L_16191683_SNP [dm3] 2L_16191683_SNP [dm6]	C	A	4.266e^-4	0.881	INTERGENIC
2L	5916407	2L_5916407_SNP [dm3] 2L_5916407_SNP [dm6]	T	C	4.271e^-4	0.881	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_chinmo
2L	15863712	2L_15863712_SNP [dm3] 2L_15863712_SNP [dm6]	T	A	4.273e^-4	0.881	DOWNSTREAM CR42791 INTERGENIC
3R	10290315	3R_10290315_SNP [dm3] 3R_14464593_SNP [dm6]	A	C	4.281e^-4	0.881	INTRON cv-c
2L	15097569	2L_15097569_DEL [dm3] 2L_15097569_DEL [dm6]	TT	T	4.294e^-4	0.881	DOWNSTREAM CG15270 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8888953	2L_8888953_SNP [dm3] 2L_8888953_SNP [dm6]	A	T	4.296e^-4	0.881	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3L	16565938	3L_16565938_SNP [dm3] 3L_16572838_SNP [dm6]	T	A	4.306e^-4	0.881	UPSTREAM Mipp1 INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	1319593	2R_1319593_SNP [dm3] 2R_5432088_SNP [dm6]	T	G	4.312e^-4	0.881	INTRON laccase2
3L	17820437	3L_17820437_SNP [dm3] 3L_17827337_SNP [dm6]	A	T	4.316e^-4	0.881	INTRON Grd
3L	5486817	3L_5486817_SNP [dm3] 3L_5493717_SNP [dm6]	T	C	4.324e^-4	0.881	EXON CR44520
3R	15854577	3R_15854577_SNP [dm3] 3R_20028855_SNP [dm6]	A	G	4.336e^-4	0.881	UPSTREAM CG4424 DOWNSTREAM trem INTRON CG4854	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	5110380	X_5110380_SNP [dm3] X_5216347_SNP [dm6]	A	G	4.337e^-4	0.881	INTRON CG15465 & 1 other
X	12421887	X_12421887_SNP [dm3] X_12527854_SNP [dm6]	A	C	4.338e^-4	0.881	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
X	12071810	X_12071810_SNP [dm3] X_12177777_SNP [dm6]	T	C	4.353e^-4	0.881	SYNONYMOUS_CODING CG1924 INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7263561	3R_7263561_SNP [dm3] 3R_11437839_SNP [dm6]	A	C	4.372e^-4	0.881	UTR_5_PRIME CG17230 UTR_3_PRIME sals DOWNSTREAM CG5281	TF binding site BDTNP1_TFBS_Med
2L	5923031	2L_5923031_SNP [dm3] 2L_5923031_SNP [dm6]	C	T	4.374e^-4	0.881	UTR_3_PRIME CG9016 DOWNSTREAM bchs
3R	14656044	3R_14656044_INS [dm3] 3R_18830322_INS [dm6]	A	AA	4.380e^-4	0.881	INTRON CG18208
X	15868123	X_15868123_DEL [dm3] X_15974090_DEL [dm6]	TTGAAAT	T	4.395e^-4	0.881	UPSTREAM mmd & 1 other DOWNSTREAM CR45527 INTERGENIC
3L	10377578	3L_10377578_SNP [dm3] 3L_10384478_SNP [dm6]	A	C	4.402e^-4	0.881	INTERGENIC
3L	2827180	3L_2827180_DEL [dm3] 3L_2827180_DEL [dm6]	TGCGATT	C	4.422e^-4	0.881	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4929676	2L_4929676_SNP [dm3] 2L_4929676_SNP [dm6]	A	G	4.429e^-4	0.881	INTRON hoe1
3R	12560872	3R_12560872_SNP [dm3] 3R_16735150_SNP [dm6]	A	G	4.430e^-4	0.881	UPSTREAM Ubx INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	24122609	3R_24122609_DEL [dm3] 3R_28296887_DEL [dm6]	CAC	C	4.434e^-4	0.881	INTERGENIC
2L	10946460	2L_10946460_SNP [dm3] 2L_10946460_SNP [dm6]	T	G	4.444e^-4	0.881	INTRON dpr2
2R	7020529	2R_7020529_DEL [dm3] 2R_11133024_DEL [dm6]	AGGGGAAGTTAGTGGCAAAA...	A	4.453e^-4	0.881	INTERGENIC
2L	1693577	2L_1693577_INS [dm3] 2L_1693577_INS [dm6]	G	GAGGG	4.455e^-4	0.881	INTRON chinmo
2R	17494962	2R_17494962_DEL [dm3] 2R_21607457_DEL [dm6]	ACCGTTGACCCTTTTATCGA...	A	4.462e^-4	0.881	UPSTREAM CR43243 & 1 other DOWNSTREAM CG15673 INTRON CG10433	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12641420	3L_12641420_SNP [dm3] 3L_12648320_SNP [dm6]	G	A	4.462e^-4	0.881	DOWNSTREAM CR43431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	16917230	2R_16917230_SNP [dm3] 2R_21029725_SNP [dm6]	T	G	4.464e^-4	0.881	EXON CR45148
3R	23272794	3R_23272794_SNP [dm3] 3R_27447072_SNP [dm6]	T	C	4.465e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	19407124	3R_19407124_SNP [dm3] 3R_23581402_SNP [dm6]	C	A	4.470e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8197153	2R_8197153_SNP [dm3] 2R_12309648_SNP [dm6]	C	T	4.471e^-4	0.881	SYNONYMOUS_CODING CG17739	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11980368	3R_11980368_SNP [dm3] 3R_16154646_SNP [dm6]	C	G	4.474e^-4	0.881	UPSTREAM CG6006 INTERGENIC
2R	16425911	2R_16425911_SNP [dm3] 2R_20538406_SNP [dm6]	A	C	4.479e^-4	0.881	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11849025	3L_11849025_SNP [dm3] 3L_11855925_SNP [dm6]	A	C	4.494e^-4	0.881	INTRON CG44837
2R	19532493	2R_19532493_SNP [dm3] 2R_23644970_SNP [dm6]	G	T	4.501e^-4	0.881	INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19532494	2R_19532494_SNP [dm3] 2R_23644971_SNP [dm6]	A	T	4.501e^-4	0.881	INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15863738	2L_15863738_SNP [dm3] 2L_15863738_SNP [dm6]	G	T	4.504e^-4	0.881	DOWNSTREAM CR42791 INTERGENIC
2L	14686111	2L_14686111_SNP [dm3] 2L_14686111_SNP [dm6]	T	C	4.506e^-4	0.881	INTRON osp
2L	19286571	2L_19286571_SNP [dm3] 2L_19286571_SNP [dm6]	C	G	4.508e^-4	0.881	INTERGENIC
2L	3889915	2L_3889915_SNP [dm3] 2L_3889915_SNP [dm6]	T	C	4.512e^-4	0.881	UTR_5_PRIME capu INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2R	10544930	2R_10544930_SNP [dm3] 2R_14657425_SNP [dm6]	G	A	4.518e^-4	0.881	SYNONYMOUS_CODING Adgf-E
3R	9875159	3R_9875159_SNP [dm3] 3R_14049437_SNP [dm6]	G	C	4.532e^-4	0.881	INTERGENIC
3R	9875498	3R_9875498_SNP [dm3] 3R_14049776_SNP [dm6]	T	C	4.532e^-4	0.881	INTERGENIC
3R	9875516	3R_9875516_SNP [dm3] 3R_14049794_SNP [dm6]	T	G	4.532e^-4	0.881	INTERGENIC
3L	6137255	3L_6137255_SNP [dm3] 3L_6144155_SNP [dm6]	C	T	4.538e^-4	0.881	UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad INTERGENIC
3R	9535571	3R_9535571_SNP [dm3] 3R_13709849_SNP [dm6]	T	G	4.556e^-4	0.881	SYNONYMOUS_CODING CG31469 DOWNSTREAM primo-2 & 2 others
2R	13005545	2R_13005545_SNP [dm3] 2R_17118040_SNP [dm6]	A	G	4.558e^-4	0.881	DOWNSTREAM Amy-p INTERGENIC
2R	13005682	2R_13005682_SNP [dm3] 2R_17118177_SNP [dm6]	G	A	4.558e^-4	0.881	DOWNSTREAM Amy-p INTERGENIC
2L	12385892	2L_12385892_SNP [dm3] 2L_12385892_SNP [dm6]	T	C	4.561e^-4	0.881	INTRON bru-2
3R	3697111	3R_3697111_SNP [dm3] 3R_7871389_SNP [dm6]	G	T	4.562e^-4	0.881	INTRON CG17816
3R	26019286	3R_26019286_SNP [dm3] 3R_30193564_SNP [dm6]	C	A	4.573e^-4	0.881	INTERGENIC
3R	11266299	3R_11266299_SNP [dm3] 3R_15440577_SNP [dm6]	G	A	4.573e^-4	0.881	INTRON Act88F	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	17494804	2R_17494804_INS [dm3] 2R_21607299_INS [dm6]	C	CCAC	4.584e^-4	0.881	UTR_5_PRIME CG10433 UPSTREAM CR43243 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13349884	2R_13349884_DEL [dm3] 2R_17462379_DEL [dm6]	GAG	G	4.594e^-4	0.881	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7768218	3R_7768218_SNP [dm3] 3R_11942496_SNP [dm6]	A	C	4.599e^-4	0.881	INTRON Cad87A
2R	17513715	2R_17513715_SNP [dm3] 2R_21626210_SNP [dm6]	T	G	4.600e^-4	0.881	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_sens
2R	12778411	2R_12778411_SNP [dm3] 2R_16890906_SNP [dm6]	C	T	4.601e^-4	0.881	INTRON CG8910	TF binding site BDTNP1_TFBS_dl
2R	18600916	2R_18600916_DEL [dm3] 2R_22713411_DEL [dm6]	CC	C	4.608e^-4	0.881	DOWNSTREAM CG30275 INTRON CG30268
2L	8549106	2L_8549106_SNP [dm3] 2L_8549106_SNP [dm6]	G	A	4.610e^-4	0.881	INTRON Sema-1a
2L	1296991	2L_1296991_SNP [dm3] 2L_1296991_SNP [dm6]	C	G	4.618e^-4	0.881	DOWNSTREAM robo3 INTERGENIC
X	6652134	X_6652134_DEL [dm3] X_6758101_DEL [dm6]	CAAGT	C	4.620e^-4	0.881	DOWNSTREAM CR43496 INTRON CG14438	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	5385771	2L_5385771_SNP [dm3] 2L_5385771_SNP [dm6]	G	T	4.621e^-4	0.881	INTERGENIC
X	17019097	X_17019097_SNP [dm3] X_17125064_SNP [dm6]	A	T	4.624e^-4	0.881	UPSTREAM CG5004 INTRON CG5004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	17820193	3L_17820193_INS [dm3] 3L_17827093_INS [dm6]	A	AA	4.628e^-4	0.881	INTRON Grd
2R	18600922	2R_18600922_SNP [dm3] 2R_22713417_SNP [dm6]	C	T	4.630e^-4	0.881	DOWNSTREAM CG30275 INTRON CG30268
2L	22314945	2L_22314945_SNP [dm3] 2L_22314945_SNP [dm6]	C	T	4.634e^-4	0.881	INTRON CG17018
2R	12248422	2R_12248422_SNP [dm3] 2R_16360917_SNP [dm6]	T	A	4.635e^-4	0.881	SYNONYMOUS_CODING CG6262 UPSTREAM CG6262	TF binding site mE1_TFBS_cad
2R	18543262	2R_18543262_SNP [dm3] 2R_22655757_SNP [dm6]	A	G	4.636e^-4	0.881	UPSTREAM CG30196 DOWNSTREAM CG43325 INTRON CG43325 & 1 other EXON CR45268	TF binding site mE1_TFBS_cad
2R	13097245	2R_13097245_SNP [dm3] 2R_17209740_SNP [dm6]	T	G	4.641e^-4	0.881	INTERGENIC
3L	10848239	3L_10848239_SNP [dm3] 3L_10855139_SNP [dm6]	G	A	4.650e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2485276	2L_2485276_SNP [dm3] 2L_2485276_SNP [dm6]	C	T	4.650e^-4	0.881	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	12248650	2R_12248650_SNP [dm3] 2R_16361145_SNP [dm6]	T	C	4.655e^-4	0.881	SYNONYMOUS_CODING CG6262 UPSTREAM CG6262
3L	6256888	3L_6256888_SNP [dm3] 3L_6263788_SNP [dm6]	C	A	4.655e^-4	0.881	UPSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21626374	3R_21626374_SNP [dm3] 3R_25800652_SNP [dm6]	T	A	4.659e^-4	0.881	INTERGENIC
3R	12477272	3R_12477272_SNP [dm3] 3R_16651550_SNP [dm6]	C	G	4.660e^-4	0.881	UTR_3_PRIME CG14907 UPSTREAM CG14906 DOWNSTREAM modSP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	3700206	3R_3700206_SNP [dm3] 3R_7874484_SNP [dm6]	A	G	4.662e^-4	0.881	INTRON CG17816
2R	12712526	2R_12712526_SNP [dm3] 2R_16825021_SNP [dm6]	C	G	4.663e^-4	0.881	UPSTREAM CG34459 INTRON CG34459
2R	6526015	2R_6526015_SNP [dm3] 2R_10638510_SNP [dm6]	G	T	4.676e^-4	0.881	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
3L	4142796	3L_4142796_SNP [dm3] 3L_4142796_SNP [dm6]	C	T	4.680e^-4	0.881	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3L	4142801	3L_4142801_SNP [dm3] 3L_4142801_SNP [dm6]	G	A	4.680e^-4	0.881	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
2R	12242982	2R_12242982_SNP [dm3] 2R_16355477_SNP [dm6]	T	G	4.682e^-4	0.881	UPSTREAM CG30098 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17494793	2R_17494793_SNP [dm3] 2R_21607288_SNP [dm6]	A	G	4.688e^-4	0.881	UTR_5_PRIME CG10433 UPSTREAM CR43243 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12049992	3L_12049992_DEL [dm3] 3L_12056892_DEL [dm6]	ATCAG	T	4.691e^-4	0.881	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21055023	X_21055023_SNP [dm3] X_21183996_SNP [dm6]	A	C	4.692e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	11318881	3L_11318881_SNP [dm3] 3L_11325781_SNP [dm6]	T	C	4.693e^-4	0.881	UPSTREAM CR44723 INTERGENIC
2R	2798956	2R_2798956_SNP [dm3] 2R_6911451_SNP [dm6]	G	C	4.695e^-4	0.881	INTRON CG30158
3L	10157212	3L_10157212_SNP [dm3] 3L_10164112_SNP [dm6]	A	T	4.696e^-4	0.881	INTRON dpr10
2R	12778303	2R_12778303_SNP [dm3] 2R_16890798_SNP [dm6]	A	G	4.703e^-4	0.881	INTRON CG8910	TF binding site BDTNP1_TFBS_dl
X	5110305	X_5110305_SNP [dm3] X_5216272_SNP [dm6]	A	T	4.722e^-4	0.881	INTRON CG15465 & 1 other
2R	13378219	2R_13378219_SNP [dm3] 2R_17490714_SNP [dm6]	T	C	4.735e^-4	0.881	INTRON NT5E-2
2L	3523977	2L_3523977_SNP [dm3] 2L_3523977_SNP [dm6]	A	G	4.740e^-4	0.881	UTR_5_PRIME Sr-CIV
2R	9084813	2R_9084813_SNP [dm3] 2R_13197308_SNP [dm6]	C	T	4.744e^-4	0.881	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8908634	X_8908634_SNP [dm3] X_9014601_SNP [dm6]	A	G	4.744e^-4	0.881	INTRON rdgA & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12186393	3L_12186393_SNP [dm3] 3L_12193293_SNP [dm6]	C	T	4.744e^-4	0.881	NON_SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
X	14401429	X_14401429_SNP [dm3] X_14507396_SNP [dm6]	C	G	4.746e^-4	0.881	INTERGENIC
3R	24826156	3R_24826156_SNP [dm3] 3R_29000434_SNP [dm6]	G	A	4.749e^-4	0.881	INTRON wat
3R	24826157	3R_24826157_SNP [dm3] 3R_29000435_SNP [dm6]	C	G	4.749e^-4	0.881	INTRON wat
2R	1318637	2R_1318637_SNP [dm3] 2R_5431132_SNP [dm6]	C	T	4.752e^-4	0.881	INTRON laccase2	transposable element FlyBase
2L	10703589	2L_10703589_SNP [dm3] 2L_10703589_SNP [dm6]	T	G	4.761e^-4	0.881	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
2R	7898349	2R_7898349_SNP [dm3] 2R_12010844_SNP [dm6]	C	T	4.761e^-4	0.881	INTRON otk
2L	19274437	2L_19274437_INS [dm3] 2L_19274437_INS [dm6]	C	CG	4.772e^-4	0.881	INTERGENIC
3R	9381344	3R_9381344_SNP [dm3] 3R_13555622_SNP [dm6]	C	A	4.775e^-4	0.881	INTERGENIC
3L	10377696	3L_10377696_DEL [dm3] 3L_10384596_DEL [dm6]	AA	A	4.777e^-4	0.881	INTERGENIC
2L	7455711	2L_7455711_SNP [dm3] 2L_7455711_SNP [dm6]	C	A	4.786e^-4	0.881	SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15505073	3L_15505073_SNP [dm3] 3L_15511973_SNP [dm6]	A	T	4.787e^-4	0.881	UTR_5_PRIME Eip71CD DOWNSTREAM gdl INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16345997	3L_16345997_SNP [dm3] 3L_16352897_SNP [dm6]	A	C	4.796e^-4	0.881	SYNONYMOUS_CODING CG4933 UPSTREAM CG4925 DOWNSTREAM Pdh	TF binding site mE1_TFBS_sens

By genomic position
Variant impact
Gene name

Cuticul_5_9_C27_1_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results