DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.034e^-21)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	<

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	11.5993	0.003
In_3R_K	29.4214	4.0853e-07

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2374 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	16899149	3R_16899149_SNP [dm3] 3R_21073427_SNP [dm6]	C	T	1.725e^-7	0.323	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	11442707	2L_11442707_SNP [dm3] 2L_11442707_SNP [dm6]	A	C	7.148e^-7	0.449	INTRON salm
2L	19437195	2L_19437195_SNP [dm3] 2L_19437195_SNP [dm6]	C	A	7.189e^-7	0.449	INTRON CG10237
3L	13880697	3L_13880697_SNP [dm3] 3L_13887597_SNP [dm6]	G	C	1.083e^-6	0.462	INTRON dysc
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	1.232e^-6	0.462	INTRON salm
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	1.666e^-6	0.499	INTRON salm
2L	11442875	2L_11442875_DEL [dm3] 2L_11442875_DEL [dm6]	CAC	T	2.280e^-6	0.499	INTRON salm
3L	13382915	3L_13382915_SNP [dm3] 3L_13389815_SNP [dm6]	C	T	2.306e^-6	0.499	NON_SYNONYMOUS_CODING Poc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	16899060	3R_16899060_DEL [dm3] 3R_21073338_DEL [dm6]	TGT	T	2.395e^-6	0.499	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	455234	3L_455234_SNP [dm3] 3L_455234_SNP [dm6]	C	G	2.901e^-6	0.505	INTRON klar
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	2.963e^-6	0.505	INTRON salm
2L	11442910	2L_11442910_INS [dm3] 2L_11442910_INS [dm6]	A	ATGGCTT	3.443e^-6	0.523	INTRON salm
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	3.917e^-6	0.523	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9356644	3R_9356644_SNP [dm3] 3R_13530922_SNP [dm6]	T	C	4.169e^-6	0.523	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13383103	3L_13383103_SNP [dm3] 3L_13390003_SNP [dm6]	T	C	4.185e^-6	0.523	UTR_5_PRIME Poc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11442809	2L_11442809_SNP [dm3] 2L_11442809_SNP [dm6]	A	C	4.466e^-6	0.524	INTRON salm
2R	3262376	2R_3262376_SNP [dm3] 2R_7374871_SNP [dm6]	G	C	5.193e^-6	0.524	INTRON Dscam1	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3L	1354785	3L_1354785_SNP [dm3] 3L_1354785_SNP [dm6]	A	G	5.258e^-6	0.524	INTRON Ptp61F
3L	1608470	3L_1608470_SNP [dm3] 3L_1608470_SNP [dm6]	C	A	5.307e^-6	0.524	INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1288372	3L_1288372_SNP [dm3] 3L_1288372_SNP [dm6]	G	C	6.274e^-6	0.588	DOWNSTREAM CG32333 INTRON CG32333
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	7.418e^-6	0.653	INTRON salm
2R	8109725	2R_8109725_SNP [dm3] 2R_12222220_SNP [dm6]	G	C	7.665e^-6	0.653	INTERGENIC
3R	7734002	3R_7734002_SNP [dm3] 3R_11908280_SNP [dm6]	A	C	8.577e^-6	0.658	INTRON Cad87A
2R	9583032	2R_9583032_SNP [dm3] 2R_13695527_SNP [dm6]	C	A	8.592e^-6	0.658	INTRON fas
3L	13383015	3L_13383015_SNP [dm3] 3L_13389915_SNP [dm6]	C	T	8.769e^-6	0.658	UTR_5_PRIME Poc1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9583248	2R_9583248_SNP [dm3] 2R_13695743_SNP [dm6]	T	C	1.023e^-5	0.658	INTRON fas
3R	24700490	3R_24700490_SNP [dm3] 3R_28874768_SNP [dm6]	C	T	1.024e^-5	0.658	SYNONYMOUS_CODING CG14529 UPSTREAM CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1354853	3L_1354853_SNP [dm3] 3L_1354853_SNP [dm6]	G	C	1.065e^-5	0.658	INTRON Ptp61F
2L	5717452	2L_5717452_SNP [dm3] 2L_5717452_SNP [dm6]	G	T	1.070e^-5	0.658	UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
3R	6628348	3R_6628348_SNP [dm3] 3R_10802626_SNP [dm6]	T	A	1.134e^-5	0.658	INTRON CG14692
3R	9828059	3R_9828059_SNP [dm3] 3R_14002337_SNP [dm6]	A	G	1.182e^-5	0.658	INTRON rdx
3L	13383275	3L_13383275_SNP [dm3] 3L_13390175_SNP [dm6]	T	A	1.207e^-5	0.658	UPSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11468478	2L_11468478_SNP [dm3] 2L_11468478_SNP [dm6]	C	T	1.225e^-5	0.658	INTERGENIC
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	1.245e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11442729	2L_11442729_SNP [dm3] 2L_11442729_SNP [dm6]	C	T	1.324e^-5	0.658	INTRON salm
3L	1354859	3L_1354859_SNP [dm3] 3L_1354859_SNP [dm6]	A	G	1.372e^-5	0.658	INTRON Ptp61F
3R	9721237	3R_9721237_SNP [dm3] 3R_13895515_SNP [dm6]	T	A	1.373e^-5	0.658	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8964458	2R_8964458_INS [dm3] 2R_13076953_INS [dm6]	G	TATTTAGTT	1.380e^-5	0.658	INTRON Drl-2
2L	7448188	2L_7448188_SNP [dm3] 2L_7448188_SNP [dm6]	G	A	1.456e^-5	0.658	UTR_5_PRIME santa-maria INTRON santa-maria
2R	20480646	2R_20480646_SNP [dm3] 2R_24593123_SNP [dm6]	A	T	1.469e^-5	0.658	DOWNSTREAM pio INTRON pio
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	1.501e^-5	0.658	INTRON Octbeta3R
3R	16351460	3R_16351460_SNP [dm3] 3R_20525738_SNP [dm6]	C	T	1.532e^-5	0.658	INTERGENIC
3R	16899264	3R_16899264_SNP [dm3] 3R_21073542_SNP [dm6]	G	T	1.711e^-5	0.658	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	6616901	3R_6616901_SNP [dm3] 3R_10791179_SNP [dm6]	T	G	1.714e^-5	0.658	DOWNSTREAM Mcm5 INTERGENIC	regulatory region REDfly_CRMs
2R	11248676	2R_11248676_SNP [dm3] 2R_15361171_SNP [dm6]	C	T	1.738e^-5	0.658	INTRON unc-5
X	15214671	X_15214671_SNP [dm3] X_15320638_SNP [dm6]	C	T	1.811e^-5	0.658	START_GAINED Top1 UTR_5_PRIME Top1 UPSTREAM mir-4957 INTRON Top1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1354828	3L_1354828_SNP [dm3] 3L_1354828_SNP [dm6]	A	G	1.830e^-5	0.658	INTRON Ptp61F
2L	1478024	2L_1478024_SNP [dm3] 2L_1478024_SNP [dm6]	A	G	1.854e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	7049962	2R_7049962_SNP [dm3] 2R_11162457_SNP [dm6]	T	C	1.886e^-5	0.658	INTRON shn & 1 other
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	1.914e^-5	0.658	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
2L	11442474	2L_11442474_SNP [dm3] 2L_11442474_SNP [dm6]	C	A	1.915e^-5	0.658	INTRON salm
3R	7729799	3R_7729799_SNP [dm3] 3R_11904077_SNP [dm6]	C	T	1.918e^-5	0.658	INTRON Cad87A
2L	11442850	2L_11442850_SNP [dm3] 2L_11442850_SNP [dm6]	G	C	2.030e^-5	0.658	INTRON salm
3R	7734023	3R_7734023_SNP [dm3] 3R_11908301_SNP [dm6]	C	G	2.037e^-5	0.658	INTRON Cad87A
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	2.067e^-5	0.658	INTRON salm
2L	2575619	2L_2575619_SNP [dm3] 2L_2575619_SNP [dm6]	C	A	2.147e^-5	0.658	SYNONYMOUS_CODING insv UPSTREAM Rad1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	8964440	2R_8964440_SNP [dm3] 2R_13076935_SNP [dm6]	A	G	2.181e^-5	0.658	INTRON Drl-2
2R	18590251	2R_18590251_SNP [dm3] 2R_22702746_SNP [dm6]	T	C	2.233e^-5	0.658	SYNONYMOUS_CODING Obp59a INTRON CG30259
3R	14030411	3R_14030411_SNP [dm3] 3R_18204689_SNP [dm6]	G	A	2.244e^-5	0.658	INTRON CG7985
3R	16899208	3R_16899208_SNP [dm3] 3R_21073486_SNP [dm6]	A	T	2.276e^-5	0.658	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	19664210	2R_19664210_SNP [dm3] 2R_23776687_SNP [dm6]	A	G	2.291e^-5	0.658	INTRON CG9850
2R	10026121	2R_10026121_SNP [dm3] 2R_14138616_SNP [dm6]	C	G	2.294e^-5	0.658	INTRON Prosap	TF binding site mE1_TFBS_cad
3L	9328509	3L_9328509_SNP [dm3] 3L_9335409_SNP [dm6]	A	G	2.296e^-5	0.658	UPSTREAM PGRP-LA INTRON PGRP-LA
2R	8964451	2R_8964451_SNP [dm3] 2R_13076946_SNP [dm6]	G	T	2.345e^-5	0.658	INTRON Drl-2
3R	24702186	3R_24702186_SNP [dm3] 3R_28876464_SNP [dm6]	A	G	2.361e^-5	0.658	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2936188	2L_2936188_SNP [dm3] 2L_2936188_SNP [dm6]	C	T	2.512e^-5	0.658	INTRON lilli
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	2.514e^-5	0.658	INTRON Cad87A
2L	11472637	2L_11472637_SNP [dm3] 2L_11472637_SNP [dm6]	C	G	2.524e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11442523	2L_11442523_SNP [dm3] 2L_11442523_SNP [dm6]	C	T	2.552e^-5	0.658	INTRON salm
2R	16051913	2R_16051913_SNP [dm3] 2R_20164408_SNP [dm6]	G	A	2.567e^-5	0.658	INTERGENIC
2L	10153952	2L_10153952_SNP [dm3] 2L_10153952_SNP [dm6]	G	A	2.615e^-5	0.658	SYNONYMOUS_CODING CG4839 INTRON CG44153
2L	11442524	2L_11442524_SNP [dm3] 2L_11442524_SNP [dm6]	G	T	2.650e^-5	0.658	INTRON salm
2R	12866198	2R_12866198_SNP [dm3] 2R_16978693_SNP [dm6]	T	C	2.665e^-5	0.658	INTRON Cbp53E
3L	7452459	3L_7452459_SNP [dm3] 3L_7459359_SNP [dm6]	C	T	2.707e^-5	0.658	DOWNSTREAM ppk26 INTERGENIC
3R	3853227	3R_3853227_SNP [dm3] 3R_8027505_SNP [dm6]	G	A	2.747e^-5	0.658	UPSTREAM CG2747 DOWNSTREAM ImpE3 INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	20272734	2R_20272734_SNP [dm3] 2R_24385211_SNP [dm6]	A	C	2.781e^-5	0.658	INTRON mAChR-A	TF binding site mE1_TFBS_cad
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	2.793e^-5	0.658	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
3L	12185047	3L_12185047_SNP [dm3] 3L_12191947_SNP [dm6]	G	A	2.872e^-5	0.658	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
3R	10793720	3R_10793720_SNP [dm3] 3R_14967998_SNP [dm6]	C	T	2.911e^-5	0.658	INTERGENIC
3R	19623204	3R_19623204_SNP [dm3] 3R_23797482_SNP [dm6]	C	T	2.959e^-5	0.658	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad
X	6439783	X_6439783_SNP [dm3] X_6545750_SNP [dm6]	G	T	2.961e^-5	0.658	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1477876	2L_1477876_SNP [dm3] 2L_1477876_SNP [dm6]	C	G	2.971e^-5	0.658	INTERGENIC
X	17845068	X_17845068_SNP [dm3] X_17951035_SNP [dm6]	A	G	2.979e^-5	0.658	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8964455	2R_8964455_SNP [dm3] 2R_13076950_SNP [dm6]	T	G	2.991e^-5	0.658	INTRON Drl-2
2L	8224915	2L_8224915_SNP [dm3] 2L_8224915_SNP [dm6]	G	A	3.002e^-5	0.658	SYNONYMOUS_CODING Pvr
3R	25832010	3R_25832010_SNP [dm3] 3R_30006288_SNP [dm6]	G	C	3.038e^-5	0.658	INTRON Nlp & 1 other	TF binding site mE1_TFBS_sens
3L	20875545	3L_20875545_SNP [dm3] 3L_20882445_SNP [dm6]	T	A	3.126e^-5	0.658	INTRON CG32432
2R	7053816	2R_7053816_SNP [dm3] 2R_11166311_SNP [dm6]	T	A	3.161e^-5	0.658	INTRON shn & 1 other
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	3.177e^-5	0.658	INTRON CG14877
2L	11443197	2L_11443197_SNP [dm3] 2L_11443197_SNP [dm6]	G	A	3.192e^-5	0.658	INTRON salm
X	6439781	X_6439781_SNP [dm3] X_6545748_SNP [dm6]	G	C	3.251e^-5	0.658	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8145393	2R_8145393_SNP [dm3] 2R_12257888_SNP [dm6]	A	T	3.256e^-5	0.658	INTRON Vha36-2	TF binding site mE1_TFBS_cad
X	8736742	X_8736742_SNP [dm3] X_8842709_SNP [dm6]	A	T	3.270e^-5	0.658	INTRON CG12075
2L	15093320	2L_15093320_DEL [dm3] 2L_15093320_DEL [dm6]	TTGATTAT	T	3.303e^-5	0.658	INTRON CG15270
2R	8089970	2R_8089970_SNP [dm3] 2R_12202465_SNP [dm6]	A	G	3.331e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7924689	3R_7924689_SNP [dm3] 3R_12098967_SNP [dm6]	A	C	3.527e^-5	0.689	INTRON dpr17	TF binding site mE1_TFBS_HSA
2L	11442495	2L_11442495_SNP [dm3] 2L_11442495_SNP [dm6]	T	C	3.561e^-5	0.689	INTRON salm
2R	18245408	2R_18245408_SNP [dm3] 2R_22357903_SNP [dm6]	A	G	3.646e^-5	0.698	INTRON Liprin-gamma	transposable element FlyBase
3R	14031060	3R_14031060_SNP [dm3] 3R_18205338_SNP [dm6]	C	T	3.747e^-5	0.703	INTRON CG7985
2L	8501477	2L_8501477_SNP [dm3] 2L_8501477_SNP [dm6]	G	C	3.776e^-5	0.703	INTRON Dh31

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.014e^-21)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.06277

Kruskal-Wallis test

Covariate	χ²	p-value
wolba	5.6901	0.0171
In_3R_P	4.9703	0.0833
In_3R_K	13.4131	0.0012

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2049 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	14189504	3L_14189504_SNP [dm3] 3L_14196404_SNP [dm6]	A	T	1.480e^-7	0.082	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	3698108	3R_3698108_SNP [dm3] 3R_7872386_SNP [dm6]	A	C	1.520e^-7	0.082	INTRON CG17816
2L	15458494	2L_15458494_SNP [dm3] 2L_15458494_SNP [dm6]	G	T	2.015e^-7	0.082	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15458161	2L_15458161_SNP [dm3] 2L_15458161_SNP [dm6]	A	T	2.229e^-7	0.082	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12443070	2R_12443070_SNP [dm3] 2R_16555565_SNP [dm6]	T	A	2.287e^-7	0.082	INTRON Syn2
2L	15458164	2L_15458164_SNP [dm3] 2L_15458164_SNP [dm6]	T	G	3.126e^-7	0.082	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	3698102	3R_3698102_SNP [dm3] 3R_7872380_SNP [dm6]	G	A	3.374e^-7	0.082	INTRON CG17816
2L	15458230	2L_15458230_SNP [dm3] 2L_15458230_SNP [dm6]	G	C	3.852e^-7	0.082	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11438928	2R_11438928_SNP [dm3] 2R_15551423_SNP [dm6]	G	C	3.938e^-7	0.082	INTERGENIC
3L	14189503	3L_14189503_SNP [dm3] 3L_14196403_SNP [dm6]	G	A	4.558e^-7	0.085	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	13023226	2R_13023226_SNP [dm3] 2R_17135721_SNP [dm6]	A	G	5.035e^-7	0.086	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
2L	15458384	2L_15458384_SNP [dm3] 2L_15458384_SNP [dm6]	T	C	6.070e^-7	0.095	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15458068	2L_15458068_SNP [dm3] 2L_15458068_SNP [dm6]	T	G	6.921e^-7	0.1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	15458124	2L_15458124_SNP [dm3] 2L_15458124_SNP [dm6]	T	A	9.322e^-7	0.125	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11736299	2R_11736299_DEL [dm3] 2R_15848794_DEL [dm6]	CGCCGTGATACAAGCTCC...	C	2.108e^-6	0.264	UTR_5_PRIME tun
2L	15457689	2L_15457689_SNP [dm3] 2L_15457689_SNP [dm6]	T	C	2.873e^-6	0.319	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	8261742	3L_8261742_SNP [dm3] 3L_8268642_SNP [dm6]	G	T	2.992e^-6	0.319	INTRON Dscam4
2R	6914114	2R_6914114_DEL [dm3] 2R_11026609_DEL [dm6]	TC	T	3.063e^-6	0.319	INTRON luna
3R	3698149	3R_3698149_SNP [dm3] 3R_7872427_SNP [dm6]	T	C	3.626e^-6	0.358	INTRON CG17816
3R	3698160	3R_3698160_SNP [dm3] 3R_7872438_SNP [dm6]	G	A	3.949e^-6	0.366	INTRON CG17816
3R	2306995	3R_2306995_SNP [dm3] 3R_6481273_SNP [dm6]	T	C	4.096e^-6	0.366	INTRON CG15186
2L	1235477	2L_1235477_SNP [dm3] 2L_1235477_SNP [dm6]	C	T	4.310e^-6	0.367	INTERGENIC
2R	13549434	2R_13549434_SNP [dm3] 2R_17661929_SNP [dm6]	T	C	5.470e^-6	0.446	INTRON CCHa1-R
2R	13920139	2R_13920139_SNP [dm3] 2R_18032634_SNP [dm6]	A	G	5.950e^-6	0.465	INTERGENIC
3R	2788954	3R_2788954_DEL [dm3] 3R_6963232_DEL [dm6]	GG	G	6.646e^-6	0.489	INTRON Antp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16396695	3R_16396695_SNP [dm3] 3R_20570973_SNP [dm6]	G	A	6.772e^-6	0.489	INTRON CG5191
3R	22216662	3R_22216662_SNP [dm3] 3R_26390940_SNP [dm6]	G	A	8.011e^-6	0.557	INTERGENIC
2L	1238393	2L_1238393_SNP [dm3] 2L_1238393_SNP [dm6]	G	C	9.112e^-6	0.596	INTERGENIC
2R	3775699	2R_3775699_SNP [dm3] 2R_7888194_SNP [dm6]	A	G	9.209e^-6	0.596	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1278326	2L_1278326_SNP [dm3] 2L_1278326_SNP [dm6]	A	G	9.573e^-6	0.599	INTRON robo3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1253848	3L_1253848_SNP [dm3] 3L_1253848_SNP [dm6]	T	A	1.048e^-5	0.608	UPSTREAM CG9133 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19174958	X_19174958_SNP [dm3] X_19280925_SNP [dm6]	C	T	1.072e^-5	0.608	UPSTREAM CG8028 DOWNSTREAM CG8034 INTERGENIC
2L	3788627	2L_3788627_SNP [dm3] 2L_3788627_SNP [dm6]	T	C	1.138e^-5	0.608	INTRON CG3921
2R	6916972	2R_6916972_SNP [dm3] 2R_11029467_SNP [dm6]	C	G	1.171e^-5	0.608	INTRON luna	TF binding site mE1_TFBS_chinmo
2L	10194938	2L_10194938_SNP [dm3] 2L_10194938_SNP [dm6]	C	G	1.186e^-5	0.608	SYNONYMOUS_CODING Sur
2L	1235435	2L_1235435_SNP [dm3] 2L_1235435_SNP [dm6]	C	G	1.190e^-5	0.608	INTERGENIC
2R	13920115	2R_13920115_SNP [dm3] 2R_18032610_SNP [dm6]	T	A	1.200e^-5	0.608	INTERGENIC
3R	17736170	3R_17736170_SNP [dm3] 3R_21910448_SNP [dm6]	C	G	1.404e^-5	0.63	INTERGENIC
2R	12621142	2R_12621142_SNP [dm3] 2R_16733637_SNP [dm6]	C	T	1.405e^-5	0.63	UPSTREAM CG30463 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8909866	2R_8909866_SNP [dm3] 2R_13022361_SNP [dm6]	G	T	1.425e^-5	0.63	INTERGENIC
2R	11267739	2R_11267739_SNP [dm3] 2R_15380234_SNP [dm6]	T	G	1.435e^-5	0.63	UPSTREAM SRPK INTRON dup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14762741	2R_14762741_SNP [dm3] 2R_18875236_SNP [dm6]	A	T	1.442e^-5	0.63	INTERGENIC
3L	9400175	3L_9400175_SNP [dm3] 3L_9407075_SNP [dm6]	C	T	1.445e^-5	0.63	UTR_3_PRIME CG4022 DOWNSTREAM Cpr67B & 1 other
2R	13549424	2R_13549424_DEL [dm3] 2R_17661919_DEL [dm6]	ACAATA	A	1.482e^-5	0.632	INTRON CCHa1-R
2R	11281183	2R_11281183_SNP [dm3] 2R_15393678_SNP [dm6]	C	T	1.592e^-5	0.657	INTERGENIC
2R	16172851	2R_16172851_SNP [dm3] 2R_20285346_SNP [dm6]	C	T	1.642e^-5	0.657	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
2R	12032080	2R_12032080_SNP [dm3] 2R_16144575_SNP [dm6]	T	C	1.647e^-5	0.657	SYNONYMOUS_CODING Aats-cys
2R	6915014	2R_6915014_SNP [dm3] 2R_11027509_SNP [dm6]	C	A	1.704e^-5	0.657	INTRON luna
2L	15454552	2L_15454552_SNP [dm3] 2L_15454552_SNP [dm6]	A	G	1.715e^-5	0.657	INTERGENIC	TF binding site mE1_TFBS_cad
X	3976117	X_3976117_INS [dm3] X_4082084_INS [dm6]	A	ATGAAGTACTTTAATTTA...	1.775e^-5	0.661	INTRON CG43689
2R	16172875	2R_16172875_SNP [dm3] 2R_20285370_SNP [dm6]	A	G	1.798e^-5	0.661	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
X	20343022	X_20343022_SNP [dm3] X_20471995_SNP [dm6]	T	C	1.989e^-5	0.665	UTR_3_PRIME RhoGAP19D	TF binding site mE1_TFBS_cad
2R	13919968	2R_13919968_SNP [dm3] 2R_18032463_SNP [dm6]	G	A	2.028e^-5	0.665	INTERGENIC
2R	13919973	2R_13919973_SNP [dm3] 2R_18032468_SNP [dm6]	G	A	2.028e^-5	0.665	INTERGENIC
3R	3698224	3R_3698224_SNP [dm3] 3R_7872502_SNP [dm6]	A	C	2.034e^-5	0.665	INTRON CG17816
3L	8261751	3L_8261751_SNP [dm3] 3L_8268651_SNP [dm6]	A	T	2.078e^-5	0.665	INTRON Dscam4
2R	6915005	2R_6915005_SNP [dm3] 2R_11027500_SNP [dm6]	C	T	2.115e^-5	0.665	INTRON luna
2R	16062350	2R_16062350_SNP [dm3] 2R_20174845_SNP [dm6]	T	C	2.118e^-5	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1235419	2L_1235419_SNP [dm3] 2L_1235419_SNP [dm6]	C	G	2.183e^-5	0.665	INTERGENIC
2R	12774793	2R_12774793_SNP [dm3] 2R_16887288_SNP [dm6]	G	A	2.197e^-5	0.665	INTRON CG8910
2L	2935910	2L_2935910_SNP [dm3] 2L_2935910_SNP [dm6]	C	G	2.248e^-5	0.665	INTRON lilli
3L	12186539	3L_12186539_SNP [dm3] 3L_12193439_SNP [dm6]	C	T	2.416e^-5	0.665	SPLICE_SITE_REGION thoc6 DOWNSTREAM Est-P INTRON thoc6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
3R	15478423	3R_15478423_SNP [dm3] 3R_19652701_SNP [dm6]	A	G	2.467e^-5	0.665	SYNONYMOUS_CODING CG6184 DOWNSTREAM CG31219	TF binding site mE1_TFBS_chinmo
2R	14698626	2R_14698626_SNP [dm3] 2R_18811121_SNP [dm6]	A	G	2.511e^-5	0.665	INTRON CG15096
2R	13850050	2R_13850050_SNP [dm3] 2R_17962545_SNP [dm6]	A	T	2.608e^-5	0.665	INTERGENIC
2R	17604959	2R_17604959_SNP [dm3] 2R_21717454_SNP [dm6]	G	A	2.628e^-5	0.665	SYNONYMOUS_CODING Tango11 UPSTREAM CG30398 DOWNSTREAM HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3776245	2R_3776245_SNP [dm3] 2R_7888740_SNP [dm6]	A	G	2.654e^-5	0.665	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1292169	2L_1292169_SNP [dm3] 2L_1292169_SNP [dm6]	A	T	2.672e^-5	0.665	INTRON robo3
2L	1557440	2L_1557440_SNP [dm3] 2L_1557440_SNP [dm6]	C	T	2.681e^-5	0.665	INTRON haf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3698404	3R_3698404_SNP [dm3] 3R_7872682_SNP [dm6]	A	G	2.695e^-5	0.665	INTRON CG17816
2L	4213596	2L_4213596_SNP [dm3] 2L_4213596_SNP [dm6]	T	G	2.704e^-5	0.665	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16396703	3R_16396703_SNP [dm3] 3R_20570981_SNP [dm6]	T	A	2.721e^-5	0.665	INTRON CG5191
2L	19388889	2L_19388889_SNP [dm3] 2L_19388889_SNP [dm6]	T	A	2.721e^-5	0.665	INTRON CG17549
3R	21009365	3R_21009365_SNP [dm3] 3R_25183643_SNP [dm6]	T	C	2.769e^-5	0.665	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	1318624	2R_1318624_SNP [dm3] 2R_5431119_SNP [dm6]	A	G	2.773e^-5	0.665	INTRON laccase2	transposable element FlyBase
2R	13512518	2R_13512518_SNP [dm3] 2R_17625013_SNP [dm6]	G	T	2.883e^-5	0.665	INTRON CG10936
2L	1344223	2L_1344223_SNP [dm3] 2L_1344223_SNP [dm6]	G	A	3.015e^-5	0.665	UPSTREAM Cdlc2 & 1 other INTERGENIC
2R	13160485	2R_13160485_SNP [dm3] 2R_17272980_SNP [dm6]	T	C	3.087e^-5	0.665	INTRON mbl
2R	3777346	2R_3777346_SNP [dm3] 2R_7889841_SNP [dm6]	C	T	3.112e^-5	0.665	UPSTREAM CG30377 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16396701	3R_16396701_SNP [dm3] 3R_20570979_SNP [dm6]	A	T	3.123e^-5	0.665	INTRON CG5191
2R	12031972	2R_12031972_SNP [dm3] 2R_16144467_SNP [dm6]	T	G	3.126e^-5	0.665	SYNONYMOUS_CODING Aats-cys
2L	20001530	2L_20001530_DEL [dm3] 2L_20001530_DEL [dm6]	ATAGACAA	A	3.148e^-5	0.665	INTRON CG43861
X	14825649	X_14825649_SNP [dm3] X_14931616_SNP [dm6]	C	T	3.177e^-5	0.665	INTRON Flo2
X	19923296	X_19923296_INS [dm3] X_20029263_INS [dm6]	C	CC	3.186e^-5	0.665	INTRON Dop2R
2L	15458192	2L_15458192_SNP [dm3] 2L_15458192_SNP [dm6]	C	T	3.211e^-5	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15458391	2L_15458391_DEL [dm3] 2L_15458391_DEL [dm6]	TTCACCCGCATT...	T	3.211e^-5	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	1318622	2R_1318622_SNP [dm3] 2R_5431117_SNP [dm6]	C	T	3.263e^-5	0.665	INTRON laccase2	transposable element FlyBase
2R	14219961	2R_14219961_SNP [dm3] 2R_18332456_SNP [dm6]	T	C	3.316e^-5	0.665	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3R	24864140	3R_24864140_SNP [dm3] 3R_29038418_SNP [dm6]	T	A	3.324e^-5	0.665	SYNONYMOUS_CODING Slu7 UPSTREAM Pkc98E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	11871447	2R_11871447_SNP [dm3] 2R_15983942_SNP [dm6]	T	C	3.343e^-5	0.665	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
2L	3297684	2L_3297684_SNP [dm3] 2L_3297684_SNP [dm6]	T	C	3.423e^-5	0.665	INTRON CG9663
X	8818178	X_8818178_SNP [dm3] X_8924145_SNP [dm6]	A	G	3.431e^-5	0.665	NON_SYNONYMOUS_CODING CG43255 UPSTREAM CG12661 INTRON rdgA	TF binding site BDTNP1_TFBS_dl
2R	14762800	2R_14762800_SNP [dm3] 2R_18875295_SNP [dm6]	G	T	3.433e^-5	0.665	INTERGENIC
2L	1207541	2L_1207541_SNP [dm3] 2L_1207541_SNP [dm6]	G	C	3.573e^-5	0.665	INTERGENIC
2R	11422037	2R_11422037_SNP [dm3] 2R_15534532_SNP [dm6]	G	A	3.591e^-5	0.665	INTRON CG30471
3L	12641244	3L_12641244_SNP [dm3] 3L_12648144_SNP [dm6]	G	A	3.630e^-5	0.665	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15458421	2L_15458421_SNP [dm3] 2L_15458421_SNP [dm6]	T	G	3.639e^-5	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1344206	2L_1344206_SNP [dm3] 2L_1344206_SNP [dm6]	A	T	3.653e^-5	0.665	UPSTREAM Cdlc2 & 1 other INTERGENIC
3R	25676438	3R_25676438_SNP [dm3] 3R_29850716_SNP [dm6]	T	G	3.676e^-5	0.665	SYNONYMOUS_CODING Cad99C	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10043838	3L_10043838_SNP [dm3] 3L_10050738_SNP [dm6]	C	T	3.679e^-5	0.665	INTRON dpr6

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By genomic position
Variant impact
Gene name

Cuticul_5_9_C27_1_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results