DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.296e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02872
In_3R_K	9.861e-05

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	8.8052	0.0122

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2411 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	14439953	2R_14439953_SNP [dm3] 2R_18552448_SNP [dm6]	A	G	1.283e^-6	0.658	INTERGENIC
3L	12746288	3L_12746288_SNP [dm3] 3L_12753188_SNP [dm6]	A	C	1.970e^-6	0.658	UTR_3_PRIME CG10984 DOWNSTREAM CG10973
3R	17535726	3R_17535726_SNP [dm3] 3R_21710004_SNP [dm6]	A	C	2.338e^-6	0.658	INTRON CG31176
2L	9982629	2L_9982629_SNP [dm3] 2L_9982629_SNP [dm6]	T	G	2.641e^-6	0.658	INTERGENIC	regulatory region REDfly_CRMs
2L	11971634	2L_11971634_SNP [dm3] 2L_11971634_SNP [dm6]	C	T	2.949e^-6	0.658	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9900597	3R_9900597_SNP [dm3] 3R_14074875_SNP [dm6]	A	C	3.135e^-6	0.658	INTRON foxo
X	20891586	X_20891586_SNP [dm3] X_21020559_SNP [dm6]	G	A	3.161e^-6	0.658	INTERGENIC
3R	17537127	3R_17537127_SNP [dm3] 3R_21711405_SNP [dm6]	G	A	3.384e^-6	0.658	INTRON CG31176
2L	20934671	2L_20934671_SNP [dm3] 2L_20934671_SNP [dm6]	G	A	3.526e^-6	0.658	UPSTREAM CG9270 INTERGENIC
3L	12751160	3L_12751160_SNP [dm3] 3L_12758060_SNP [dm6]	C	A	3.596e^-6	0.658	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	17536443	3R_17536443_DEL [dm3] 3R_21710721_DEL [dm6]	GGCAGAACTGATTG...	G	3.857e^-6	0.658	INTRON CG31176
2L	14865403	2L_14865403_SNP [dm3] 2L_14865403_SNP [dm6]	C	A	4.805e^-6	0.704	INTERGENIC
3R	25818024	3R_25818024_SNP [dm3] 3R_29992302_SNP [dm6]	A	G	5.608e^-6	0.704	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14865404	2L_14865404_SNP [dm3] 2L_14865404_SNP [dm6]	C	A	5.863e^-6	0.704	INTERGENIC
2R	14439785	2R_14439785_SNP [dm3] 2R_18552280_SNP [dm6]	A	C	6.227e^-6	0.704	INTERGENIC
2R	14428637	2R_14428637_SNP [dm3] 2R_18541132_SNP [dm6]	C	G	6.996e^-6	0.704	INTRON Rgk2	TF binding site mE1_TFBS_chinmo
3R	10077896	3R_10077896_SNP [dm3] 3R_14252174_SNP [dm6]	C	A	7.170e^-6	0.704	INTRON Aats-met
3L	5903135	3L_5903135_SNP [dm3] 3L_5910035_SNP [dm6]	G	A	7.400e^-6	0.704	DOWNSTREAM CG13288 INTRON CG13288
3L	12746313	3L_12746313_SNP [dm3] 3L_12753213_SNP [dm6]	C	T	7.998e^-6	0.704	UTR_3_PRIME CG10984 DOWNSTREAM CG10973
3L	12751154	3L_12751154_SNP [dm3] 3L_12758054_SNP [dm6]	A	C	8.161e^-6	0.704	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11039110	3L_11039110_SNP [dm3] 3L_11046010_SNP [dm6]	A	G	9.464e^-6	0.704	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	14428646	2R_14428646_SNP [dm3] 2R_18541141_SNP [dm6]	A	G	1.054e^-5	0.704	INTRON Rgk2	TF binding site mE1_TFBS_chinmo
3L	9423062	3L_9423062_SNP [dm3] 3L_9429962_SNP [dm6]	C	A	1.104e^-5	0.704	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11971518	2L_11971518_SNP [dm3] 2L_11971518_SNP [dm6]	G	A	1.266e^-5	0.704	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	5903378	3L_5903378_SNP [dm3] 3L_5910278_SNP [dm6]	C	T	1.300e^-5	0.704	DOWNSTREAM CG13288 INTRON CG13288
2R	19063283	2R_19063283_SNP [dm3] 2R_23175760_SNP [dm6]	C	A	1.490e^-5	0.704	INTRON CG34371
2R	16678625	2R_16678625_SNP [dm3] 2R_20791120_SNP [dm6]	G	T	1.615e^-5	0.704	UTR_5_PRIME CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
2R	12105168	2R_12105168_DEL [dm3] 2R_16217663_DEL [dm6]	AA	A	1.625e^-5	0.704	INTRON mrj	TF binding site BDTNP1_TFBS_da
2R	9143376	2R_9143376_SNP [dm3] 2R_13255871_SNP [dm6]	T	A	1.745e^-5	0.704	UPSTREAM CR44343 & 1 other INTERGENIC
2L	20934675	2L_20934675_SNP [dm3] 2L_20934675_SNP [dm6]	C	G	1.773e^-5	0.704	UPSTREAM CG9270 INTERGENIC
2R	8341093	2R_8341093_SNP [dm3] 2R_12453588_SNP [dm6]	A	G	1.816e^-5	0.704	SYNONYMOUS_CODING Lac DOWNSTREAM Dyb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6807246	2R_6807246_SNP [dm3] 2R_10919741_SNP [dm6]	G	T	1.833e^-5	0.704	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19282495	3R_19282495_SNP [dm3] 3R_23456773_SNP [dm6]	C	A	1.845e^-5	0.704	INTRON CG4374
2L	529905	2L_529905_SNP [dm3] 2L_529905_SNP [dm6]	T	G	1.891e^-5	0.704	INTRON ush	regulatory region REDfly_CRMs
3L	11798983	3L_11798983_SNP [dm3] 3L_11805883_SNP [dm6]	G	A	1.905e^-5	0.704	SPLICE_SITE_REGION CG42255 SYNONYMOUS_CODING CG42255
3L	12743868	3L_12743868_SNP [dm3] 3L_12750768_SNP [dm6]	T	C	1.905e^-5	0.704	UPSTREAM Klc INTRON CG10984	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2L	1605945	2L_1605945_SNP [dm3] 2L_1605945_SNP [dm6]	G	C	1.963e^-5	0.704	INTRON CG31935 & 1 other
3R	24165640	3R_24165640_INS [dm3] 3R_28339918_INS [dm6]	T	TT	2.032e^-5	0.704	UPSTREAM Moca-cyp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15310274	2R_15310274_SNP [dm3] 2R_19422769_SNP [dm6]	A	C	2.039e^-5	0.704	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	12421844	X_12421844_SNP [dm3] X_12527811_SNP [dm6]	A	T	2.040e^-5	0.704	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
2L	11922449	2L_11922449_SNP [dm3] 2L_11922449_SNP [dm6]	T	A	2.041e^-5	0.704	INTRON Pde1c
2L	14845093	2L_14845093_SNP [dm3] 2L_14845093_SNP [dm6]	T	A	2.089e^-5	0.704	UTR_3_PRIME CG15279
3R	16101081	3R_16101081_SNP [dm3] 3R_20275359_SNP [dm6]	C	T	2.134e^-5	0.704	INTRON cic
2R	16972214	2R_16972214_SNP [dm3] 2R_21084709_SNP [dm6]	C	T	2.243e^-5	0.704	INTRON Treh	TF binding site mE1_TFBS_cad
X	12421798	X_12421798_SNP [dm3] X_12527765_SNP [dm6]	C	T	2.279e^-5	0.704	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
3R	27086228	3R_27086228_SNP [dm3] 3R_31260506_SNP [dm6]	T	A	2.362e^-5	0.704	DOWNSTREAM CG3669 INTRON CG18672
X	12421912	X_12421912_SNP [dm3] X_12527879_SNP [dm6]	A	T	2.392e^-5	0.704	INTRON CG43921
3R	7924718	3R_7924718_DEL [dm3] 3R_12098996_DEL [dm6]	TGGCTT	T	2.431e^-5	0.704	INTRON dpr17	TF binding site mE1_TFBS_HSA
3R	10910192	3R_10910192_SNP [dm3] 3R_15084470_SNP [dm6]	G	T	2.453e^-5	0.704	INTRON CG6966
2R	14222071	2R_14222071_SNP [dm3] 2R_18334566_SNP [dm6]	A	G	2.602e^-5	0.704	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23321143	3R_23321143_SNP [dm3] 3R_27495421_SNP [dm6]	C	A	2.611e^-5	0.704	INTERGENIC
3L	9514910	3L_9514910_SNP [dm3] 3L_9521810_SNP [dm6]	G	A	2.688e^-5	0.704	INTRON CG33700
2R	15310115	2R_15310115_SNP [dm3] 2R_19422610_SNP [dm6]	C	A	2.700e^-5	0.704	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14844884	2L_14844884_DEL [dm3] 2L_14844884_DEL [dm6]	GGG	G	2.749e^-5	0.704	DOWNSTREAM CG15279 INTERGENIC
3L	12751118	3L_12751118_SNP [dm3] 3L_12758018_SNP [dm6]	G	A	2.783e^-5	0.704	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7555667	2L_7555667_SNP [dm3] 2L_7555667_SNP [dm6]	G	A	2.833e^-5	0.704	INTRON RapGAP1
3R	16428632	3R_16428632_SNP [dm3] 3R_20602910_SNP [dm6]	T	C	2.868e^-5	0.704	INTRON bon
3R	8888424	3R_8888424_SNP [dm3] 3R_13062702_SNP [dm6]	G	T	2.880e^-5	0.704	UTR_5_PRIME sim INTRON sim
X	20891561	X_20891561_SNP [dm3] X_21020534_SNP [dm6]	C	G	2.887e^-5	0.704	INTERGENIC
2R	14218128	2R_14218128_SNP [dm3] 2R_18330623_SNP [dm6]	T	A	2.936e^-5	0.704	INTRON sbb
2L	7680333	2L_7680333_DEL [dm3] 2L_7680333_DEL [dm6]	ATCTATATA	A	2.944e^-5	0.704	INTRON Myo28B1
3R	16101208	3R_16101208_SNP [dm3] 3R_20275486_SNP [dm6]	C	G	2.956e^-5	0.704	INTRON cic	TF binding site BDTNP1_TFBS_twi
2R	14222063	2R_14222063_SNP [dm3] 2R_18334558_SNP [dm6]	C	T	2.962e^-5	0.704	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11209332	2L_11209332_SNP [dm3] 2L_11209332_SNP [dm6]	A	T	2.962e^-5	0.704	INTERGENIC	silencer mE1_HDAC_PRE
X	13750063	X_13750063_SNP [dm3] X_13856030_SNP [dm6]	G	A	2.982e^-5	0.704	SYNONYMOUS_CODING mamo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17098153	3L_17098153_SNP [dm3] 3L_17105053_SNP [dm6]	A	C	3.013e^-5	0.704	INTRON Rbp6
2R	14219663	2R_14219663_SNP [dm3] 2R_18332158_SNP [dm6]	A	T	3.032e^-5	0.704	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	9423064	3L_9423064_SNP [dm3] 3L_9429964_SNP [dm6]	C	T	3.106e^-5	0.704	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11971458	2L_11971458_SNP [dm3] 2L_11971458_SNP [dm6]	A	T	3.140e^-5	0.704	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
X	8914043	X_8914043_SNP [dm3] X_9020010_SNP [dm6]	T	A	3.176e^-5	0.704	SYNONYMOUS_CODING rdgA INTRON CR43836
3L	19285729	3L_19285729_SNP [dm3] 3L_19292629_SNP [dm6]	G	A	3.185e^-5	0.704	UTR_5_PRIME Gbs-76A UPSTREAM Gbs-76A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	14845112	2L_14845112_SNP [dm3] 2L_14845112_SNP [dm6]	A	T	3.223e^-5	0.704	UTR_3_PRIME CG15279
3L	9423034	3L_9423034_SNP [dm3] 3L_9429934_SNP [dm6]	A	T	3.287e^-5	0.704	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3896214	2R_3896214_SNP [dm3] 2R_8008709_SNP [dm6]	T	A	3.293e^-5	0.704	DOWNSTREAM CG14762 INTRON Odc2	TF binding site mE1_TFBS_cad
3R	16101062	3R_16101062_DEL [dm3] 3R_20275340_DEL [dm6]	CGCCTACTGGCG...	C	3.364e^-5	0.704	INTRON cic
2R	14221804	2R_14221804_SNP [dm3] 2R_18334299_SNP [dm6]	A	T	3.376e^-5	0.704	INTRON sbb
3R	9730205	3R_9730205_SNP [dm3] 3R_13904483_SNP [dm6]	A	T	3.462e^-5	0.704	UTR_3_PRIME ems
3R	16428653	3R_16428653_SNP [dm3] 3R_20602931_SNP [dm6]	G	A	3.509e^-5	0.704	INTRON bon
3L	7307650	3L_7307650_SNP [dm3] 3L_7314550_SNP [dm6]	A	T	3.601e^-5	0.704	INTERGENIC
2L	11209417	2L_11209417_SNP [dm3] 2L_11209417_SNP [dm6]	C	T	3.608e^-5	0.704	INTERGENIC	silencer mE1_HDAC_PRE
2R	9343449	2R_9343449_SNP [dm3] 2R_13455944_SNP [dm6]	T	C	3.652e^-5	0.704	INTRON arr
2R	9143032	2R_9143032_INS [dm3] 2R_13255527_INS [dm6]	T	TATTT	3.714e^-5	0.704	UPSTREAM CR44343 INTERGENIC
2R	9601281	2R_9601281_SNP [dm3] 2R_13713776_SNP [dm6]	A	G	3.769e^-5	0.704	SYNONYMOUS_CODING fas
2R	14219961	2R_14219961_SNP [dm3] 2R_18332456_SNP [dm6]	T	C	3.772e^-5	0.704	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	14845108	2L_14845108_SNP [dm3] 2L_14845108_SNP [dm6]	G	A	3.787e^-5	0.704	UTR_3_PRIME CG15279
2R	11585720	2R_11585720_SNP [dm3] 2R_15698215_SNP [dm6]	T	G	3.795e^-5	0.704	DOWNSTREAM CG30080 & 2 others INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11426987	3L_11426987_SNP [dm3] 3L_11433887_SNP [dm6]	C	T	3.796e^-5	0.704	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	9423024	3L_9423024_SNP [dm3] 3L_9429924_SNP [dm6]	G	A	3.920e^-5	0.704	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10910191	3R_10910191_SNP [dm3] 3R_15084469_SNP [dm6]	A	G	3.933e^-5	0.704	INTRON CG6966
2L	8499587	2L_8499587_SNP [dm3] 2L_8499587_SNP [dm6]	C	T	3.952e^-5	0.704	INTRON Dh31
2R	7458085	2R_7458085_SNP [dm3] 2R_11570580_SNP [dm6]	A	G	3.981e^-5	0.704	INTERGENIC
3L	7777775	3L_7777775_SNP [dm3] 3L_7784675_SNP [dm6]	T	A	4.000e^-5	0.704	INTRON CG32369
2L	14844900	2L_14844900_SNP [dm3] 2L_14844900_SNP [dm6]	C	A	4.055e^-5	0.704	DOWNSTREAM CG15279 INTERGENIC
X	21870030	X_21870030_SNP [dm3] X_22468194_SNP [dm6]	G	C	4.073e^-5	0.704	UTR_3_PRIME CG14619
2R	3578052	2R_3578052_SNP [dm3] 2R_7690547_SNP [dm6]	A	T	4.111e^-5	0.704	INTRON CG1399
3R	22731664	3R_22731664_SNP [dm3] 3R_26905942_SNP [dm6]	T	C	4.114e^-5	0.704	INTRON T48	regulatory region REDfly_CRMs
3R	9900625	3R_9900625_SNP [dm3] 3R_14074903_SNP [dm6]	A	G	4.118e^-5	0.704	INTRON foxo
2L	17098035	2L_17098035_SNP [dm3] 2L_17098035_SNP [dm6]	T	A	4.120e^-5	0.704	INTERGENIC
3L	12750071	3L_12750071_SNP [dm3] 3L_12756971_SNP [dm6]	G	A	4.156e^-5	0.704	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12289675	3R_12289675_SNP [dm3] 3R_16463953_SNP [dm6]	A	C	4.187e^-5	0.704	NON_SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_sens
2L	10063887	2L_10063887_SNP [dm3] 2L_10063887_SNP [dm6]	C	G	4.187e^-5	0.704	UTR_3_PRIME Spn31A DOWNSTREAM CG44153
2L	20934672	2L_20934672_SNP [dm3] 2L_20934672_SNP [dm6]	A	T	4.245e^-5	0.704	UPSTREAM CG9270 INTERGENIC
2R	9039860	2R_9039860_SNP [dm3] 2R_13152355_SNP [dm6]	T	A	4.245e^-5	0.704	DOWNSTREAM TppII INTRON Ack-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16432614	3R_16432614_SNP [dm3] 3R_20606892_SNP [dm6]	C	T	4.249e^-5	0.704	SYNONYMOUS_CODING bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16568255	2L_16568255_SNP [dm3] 2L_16568255_SNP [dm6]	T	G	4.270e^-5	0.704	INTRON CG42389
2L	20934656	2L_20934656_SNP [dm3] 2L_20934656_SNP [dm6]	A	C	4.357e^-5	0.704	UPSTREAM CG9270 INTERGENIC
2L	4403450	2L_4403450_SNP [dm3] 2L_4403450_SNP [dm6]	T	C	4.461e^-5	0.704	DOWNSTREAM CG15431 & 1 other INTRON Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16105424	3R_16105424_SNP [dm3] 3R_20279702_SNP [dm6]	G	A	4.500e^-5	0.704	INTRON cic
2R	6807112	2R_6807112_SNP [dm3] 2R_10919607_SNP [dm6]	G	C	4.577e^-5	0.704	INTERGENIC
2L	21006971	2L_21006971_SNP [dm3] 2L_21006971_SNP [dm6]	A	G	4.603e^-5	0.704	INTRON CG42238
3L	12743518	3L_12743518_INS [dm3] 3L_12750418_INS [dm6]	A	AA	4.649e^-5	0.704	UPSTREAM CG10984 & 1 other INTRON CG10984	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	529954	2L_529954_SNP [dm3] 2L_529954_SNP [dm6]	T	C	4.681e^-5	0.704	INTRON ush	regulatory region REDfly_CRMs
3R	17025388	3R_17025388_INS [dm3] 3R_21199666_INS [dm6]	C	CC	4.732e^-5	0.704	UTR_5_PRIME SNF4Agamma UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9344482	2R_9344482_SNP [dm3] 2R_13456977_SNP [dm6]	C	T	4.769e^-5	0.704	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad
2R	18921903	2R_18921903_SNP [dm3] 2R_23034380_SNP [dm6]	G	A	4.775e^-5	0.704	INTRON twi & 1 other	TF binding site mE1_TFBS_cad
2R	15310295	2R_15310295_SNP [dm3] 2R_19422790_SNP [dm6]	T	A	4.788e^-5	0.704	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	529967	2L_529967_SNP [dm3] 2L_529967_SNP [dm6]	T	G	4.842e^-5	0.704	INTRON ush	regulatory region REDfly_CRMs
3R	7924728	3R_7924728_SNP [dm3] 3R_12099006_SNP [dm6]	G	T	4.866e^-5	0.704	INTRON dpr17	TF binding site mE1_TFBS_HSA
2R	3896562	2R_3896562_SNP [dm3] 2R_8009057_SNP [dm6]	C	T	4.877e^-5	0.704	UTR_3_PRIME Odc2 DOWNSTREAM CG14762
X	20687065	X_20687065_SNP [dm3] X_20816038_SNP [dm6]	C	G	4.880e^-5	0.704	INTRON shakB
4	643533	4_643533_SNP [dm3] 4_622907_SNP [dm6]	G	T	4.926e^-5	0.704	DOWNSTREAM mav & 1 other INTERGENIC
2R	3578049	2R_3578049_SNP [dm3] 2R_7690544_SNP [dm6]	G	A	4.939e^-5	0.704	INTRON CG1399
2L	9032479	2L_9032479_SNP [dm3] 2L_9032479_SNP [dm6]	A	T	5.028e^-5	0.704	UPSTREAM CG9582 & 1 other INTERGENIC
2R	19246030	2R_19246030_SNP [dm3] 2R_23358507_SNP [dm6]	T	A	5.073e^-5	0.704	UTR_3_PRIME CG9875 UPSTREAM CG3500 & 2 others DOWNSTREAM CG9875 EXON CR44168
2R	6634585	2R_6634585_SNP [dm3] 2R_10747080_SNP [dm6]	C	G	5.076e^-5	0.704	INTRON CG33144
X	9285037	X_9285037_DEL [dm3] X_9391004_DEL [dm6]	TT	T	5.091e^-5	0.704	INTRON mgl
3L	1255963	3L_1255963_SNP [dm3] 3L_1255963_SNP [dm6]	A	G	5.111e^-5	0.704	UTR_3_PRIME CG9130 & 1 other UPSTREAM CG9134
2R	5587307	2R_5587307_SNP [dm3] 2R_9699802_SNP [dm6]	A	T	5.264e^-5	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	18737232	X_18737232_SNP [dm3] X_18843199_SNP [dm6]	T	G	5.286e^-5	0.704	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	20934666	2L_20934666_MNP [dm3] 2L_20934666_MNP [dm6]	CACT	GTTA	5.408e^-5	0.704	UPSTREAM CG9270 INTERGENIC
3L	12594643	3L_12594643_INS [dm3] 3L_12601543_INS [dm6]	A	AA	5.431e^-5	0.704	INTERGENIC
X	11072212	X_11072212_SNP [dm3] X_11178179_SNP [dm6]	C	A	5.545e^-5	0.704	INTERGENIC
2L	6235364	2L_6235364_SNP [dm3] 2L_6235364_SNP [dm6]	A	T	5.547e^-5	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	11929709	2L_11929709_SNP [dm3] 2L_11929709_SNP [dm6]	A	G	5.584e^-5	0.704	INTERGENIC
3R	16100962	3R_16100962_SNP [dm3] 3R_20275240_SNP [dm6]	A	G	5.643e^-5	0.704	INTRON cic
3R	21265064	3R_21265064_SNP [dm3] 3R_25439342_SNP [dm6]	A	G	5.652e^-5	0.704	INTRON Fur1
3R	11699617	3R_11699617_SNP [dm3] 3R_15873895_SNP [dm6]	G	A	5.654e^-5	0.704	INTRON CG31183
3R	2795101	3R_2795101_SNP [dm3] 3R_6969379_SNP [dm6]	A	G	5.659e^-5	0.704	INTRON Antp	TF binding site mE1_TFBS_inv
3L	21316447	3L_21316447_SNP [dm3] 3L_21323347_SNP [dm6]	C	G	5.794e^-5	0.704	INTRON Rab26
2L	5563969	2L_5563969_SNP [dm3] 2L_5563969_SNP [dm6]	A	C	5.794e^-5	0.704	DOWNSTREAM GluRIIB & 1 other INTERGENIC
2R	14230518	2R_14230518_SNP [dm3] 2R_18343013_SNP [dm6]	A	G	5.829e^-5	0.704	INTRON sbb
3R	24484998	3R_24484998_SNP [dm3] 3R_28659276_SNP [dm6]	C	T	5.836e^-5	0.704	INTERGENIC
3R	16101172	3R_16101172_SNP [dm3] 3R_20275450_SNP [dm6]	A	G	5.836e^-5	0.704	INTRON cic	TF binding site BDTNP1_TFBS_twi
2L	8289764	2L_8289764_SNP [dm3] 2L_8289764_SNP [dm6]	T	C	5.912e^-5	0.704	UPSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	19447781	3R_19447781_SNP [dm3] 3R_23622059_SNP [dm6]	T	C	5.933e^-5	0.704	INTRON CG31145
2L	7235544	2L_7235544_SNP [dm3] 2L_7235544_SNP [dm6]	A	T	6.057e^-5	0.704	INTRON Ndae1
2L	7235553	2L_7235553_SNP [dm3] 2L_7235553_SNP [dm6]	T	A	6.057e^-5	0.704	INTRON Ndae1
2L	17094886	2L_17094886_SNP [dm3] 2L_17094886_SNP [dm6]	G	T	6.084e^-5	0.704	INTERGENIC
3R	20465373	3R_20465373_SNP [dm3] 3R_24639651_SNP [dm6]	C	T	6.095e^-5	0.704	SPLICE_SITE_REGION puf DOWNSTREAM puf INTRON puf	TF binding site mE1_TFBS_chinmo
3R	19442328	3R_19442328_SNP [dm3] 3R_23616606_SNP [dm6]	G	A	6.235e^-5	0.704	INTRON CG31145
2R	19632979	2R_19632979_DEL [dm3] 2R_23745456_DEL [dm6]	CCGTAAGATCGCCAGACGAT...	T	6.315e^-5	0.704	UPSTREAM egl INTRON egl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3R	16432503	3R_16432503_SNP [dm3] 3R_20606781_SNP [dm6]	G	A	6.341e^-5	0.704	SYNONYMOUS_CODING bon	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3780172	3L_3780172_SNP [dm3] 3L_3780172_SNP [dm6]	G	A	6.384e^-5	0.704	INTRON CG32264
X	15368565	X_15368565_SNP [dm3] X_15474532_SNP [dm6]	G	T	6.392e^-5	0.704	INTRON CG9203	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Ubx
X	18446528	X_18446528_SNP [dm3] X_18552495_SNP [dm6]	C	G	6.418e^-5	0.704	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6822249	2R_6822249_SNP [dm3] 2R_10934744_SNP [dm6]	G	C	6.485e^-5	0.704	INTERGENIC
2R	18204852	2R_18204852_DEL [dm3] 2R_22317347_DEL [dm6]	TT	T	6.496e^-5	0.704	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15310275	2R_15310275_SNP [dm3] 2R_19422770_SNP [dm6]	C	A	6.565e^-5	0.704	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	20685980	X_20685980_SNP [dm3] X_20814953_SNP [dm6]	G	A	6.574e^-5	0.704	INTRON shakB
3L	1255970	3L_1255970_DEL [dm3] 3L_1255970_DEL [dm6]	AG	A	6.584e^-5	0.704	UTR_3_PRIME CG9130 & 1 other UPSTREAM CG9134
2L	849404	2L_849404_SNP [dm3] 2L_849404_SNP [dm6]	T	A	6.598e^-5	0.704	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
X	18737224	X_18737224_SNP [dm3] X_18843191_SNP [dm6]	A	C	6.621e^-5	0.704	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	6584763	2R_6584763_SNP [dm3] 2R_10697258_SNP [dm6]	G	A	6.637e^-5	0.704	INTRON stan
2R	14222094	2R_14222094_SNP [dm3] 2R_18334589_SNP [dm6]	T	G	6.666e^-5	0.704	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25688150	3R_25688150_SNP [dm3] 3R_29862428_SNP [dm6]	T	C	6.686e^-5	0.704	UPSTREAM CG15514 & 2 others INTRON RpS8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	9588160	2R_9588160_SNP [dm3] 2R_13700655_SNP [dm6]	A	C	6.730e^-5	0.704	INTRON fas
X	11072035	X_11072035_SNP [dm3] X_11178002_SNP [dm6]	T	G	6.778e^-5	0.704	INTERGENIC
2R	6822271	2R_6822271_DEL [dm3] 2R_10934766_DEL [dm6]	TACTTGT	T	6.806e^-5	0.704	INTERGENIC
2L	20934662	2L_20934662_SNP [dm3] 2L_20934662_SNP [dm6]	C	A	6.889e^-5	0.704	UPSTREAM CG9270 INTERGENIC
2L	20934679	2L_20934679_SNP [dm3] 2L_20934679_SNP [dm6]	T	A	7.019e^-5	0.704	UPSTREAM CG9270 INTERGENIC
2R	15310293	2R_15310293_SNP [dm3] 2R_19422788_SNP [dm6]	T	A	7.053e^-5	0.704	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	18737157	X_18737157_SNP [dm3] X_18843124_SNP [dm6]	A	G	7.129e^-5	0.704	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3R	16105535	3R_16105535_SNP [dm3] 3R_20279813_SNP [dm6]	G	A	7.197e^-5	0.704	INTRON cic
3R	24488379	3R_24488379_SNP [dm3] 3R_28662657_SNP [dm6]	A	T	7.208e^-5	0.704	INTERGENIC
3R	25818009	3R_25818009_SNP [dm3] 3R_29992287_SNP [dm6]	G	T	7.211e^-5	0.704	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8837215	3L_8837215_SNP [dm3] 3L_8844115_SNP [dm6]	A	C	7.248e^-5	0.704	INTRON dally
2R	3001853	2R_3001853_SNP [dm3] 2R_7114348_SNP [dm6]	G	A	7.288e^-5	0.704	INTRON esn	TF binding site mE1_TFBS_chinmo
X	12421890	X_12421890_SNP [dm3] X_12527857_SNP [dm6]	G	T	7.299e^-5	0.704	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
3R	23037308	3R_23037308_SNP [dm3] 3R_27211586_SNP [dm6]	C	T	7.315e^-5	0.704	INTERGENIC
2L	20934664	2L_20934664_SNP [dm3] 2L_20934664_SNP [dm6]	T	A	7.324e^-5	0.704	UPSTREAM CG9270 INTERGENIC
X	21869711	X_21869711_SNP [dm3] X_22467875_SNP [dm6]	A	G	7.372e^-5	0.704	INTRON CG14619
2R	14230569	2R_14230569_SNP [dm3] 2R_18343064_SNP [dm6]	T	A	7.444e^-5	0.704	INTRON sbb
2L	15854659	2L_15854659_SNP [dm3] 2L_15854659_SNP [dm6]	T	C	7.498e^-5	0.704	SYNONYMOUS_CODING Tektin-A DOWNSTREAM CG13243
X	19998602	X_19998602_SNP [dm3] X_20104569_SNP [dm6]	C	A	7.558e^-5	0.704	INTERGENIC
3L	1255986	3L_1255986_SNP [dm3] 3L_1255986_SNP [dm6]	T	A	7.577e^-5	0.704	UTR_3_PRIME CG9130 & 1 other UPSTREAM CG9134
X	2880763	X_2880763_SNP [dm3] X_2986730_SNP [dm6]	A	T	7.595e^-5	0.704	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med
2L	10922445	2L_10922445_SNP [dm3] 2L_10922445_SNP [dm6]	C	A	7.599e^-5	0.704	INTRON dpr2
2R	14230592	2R_14230592_SNP [dm3] 2R_18343087_SNP [dm6]	C	T	7.607e^-5	0.704	INTRON sbb
2L	884870	2L_884870_SNP [dm3] 2L_884870_SNP [dm6]	A	G	7.608e^-5	0.704	INTRON CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	22104560	3R_22104560_INS [dm3] 3R_26278838_INS [dm6]	C	CACT	7.630e^-5	0.704	INTERGENIC
2L	912228	2L_912228_SNP [dm3] 2L_912228_SNP [dm6]	A	G	7.761e^-5	0.704	DOWNSTREAM CR44061 INTERGENIC
2R	3578051	2R_3578051_SNP [dm3] 2R_7690546_SNP [dm6]	C	A	7.784e^-5	0.704	INTRON CG1399
2R	14219049	2R_14219049_SNP [dm3] 2R_18331544_SNP [dm6]	T	G	7.805e^-5	0.704	INTRON sbb
3R	26404961	3R_26404961_SNP [dm3] 3R_30579239_SNP [dm6]	G	T	7.830e^-5	0.704	UPSTREAM CG9702 DOWNSTREAM tmod INTERGENIC
3R	22731497	3R_22731497_SNP [dm3] 3R_26905775_SNP [dm6]	G	A	7.838e^-5	0.704	INTRON T48	regulatory region REDfly_CRMs
3L	12743958	3L_12743958_SNP [dm3] 3L_12750858_SNP [dm6]	G	C	7.841e^-5	0.704	SPLICE_SITE_REGION CG10984 UPSTREAM Klc INTRON CG10984	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_ttk
2L	17065428	2L_17065428_SNP [dm3] 2L_17065428_SNP [dm6]	T	A	7.856e^-5	0.704	INTERGENIC
3L	7544208	3L_7544208_SNP [dm3] 3L_7551108_SNP [dm6]	T	C	7.875e^-5	0.704	INTERGENIC
2R	19061226	2R_19061226_SNP [dm3] 2R_23173703_SNP [dm6]	G	C	7.892e^-5	0.704	INTRON CG34371
2L	4403497	2L_4403497_SNP [dm3] 2L_4403497_SNP [dm6]	A	C	7.901e^-5	0.704	DOWNSTREAM CG15431 & 1 other INTRON Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12741882	3L_12741882_SNP [dm3] 3L_12748782_SNP [dm6]	A	T	7.930e^-5	0.704	INTRON Klc
3R	25290353	3R_25290353_SNP [dm3] 3R_29464631_SNP [dm6]	A	C	7.934e^-5	0.704	INTRON Ptp99A
3L	9423089	3L_9423089_SNP [dm3] 3L_9429989_SNP [dm6]	G	C	7.969e^-5	0.704	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19137292	2R_19137292_SNP [dm3] 2R_23249769_SNP [dm6]	A	G	7.988e^-5	0.704	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16544566	2L_16544566_SNP [dm3] 2L_16544566_SNP [dm6]	A	C	8.130e^-5	0.704	UPSTREAM CG42389 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	12343825	2R_12343825_SNP [dm3] 2R_16456320_SNP [dm6]	G	A	8.144e^-5	0.704	INTERGENIC
3R	10217782	3R_10217782_SNP [dm3] 3R_14392060_SNP [dm6]	T	C	8.198e^-5	0.704	UTR_3_PRIME cv-c	TF binding site mE1_TFBS_zfh1
X	17087700	X_17087700_SNP [dm3] X_17193667_SNP [dm6]	C	A	8.303e^-5	0.704	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9512443	3L_9512443_SNP [dm3] 3L_9519343_SNP [dm6]	G	A	8.314e^-5	0.704	INTRON CG33700
3R	27086259	3R_27086259_SNP [dm3] 3R_31260537_SNP [dm6]	G	C	8.382e^-5	0.704	DOWNSTREAM CG3669 INTRON CG18672
2L	20934688	2L_20934688_SNP [dm3] 2L_20934688_SNP [dm6]	T	C	8.408e^-5	0.704	UPSTREAM CG9270 INTERGENIC
X	20929825	X_20929825_SNP [dm3] X_21058798_SNP [dm6]	G	A	8.409e^-5	0.704	INTRON bves
2R	18932255	2R_18932255_SNP [dm3] 2R_23044732_SNP [dm6]	C	A	8.441e^-5	0.704	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	6792470	2R_6792470_SNP [dm3] 2R_10904965_SNP [dm6]	T	C	8.446e^-5	0.704	INTRON CG12943
2R	8555050	2R_8555050_INS [dm3] 2R_12667545_INS [dm6]	G	GTTTAAAAGTAAATAGAGTA...	8.449e^-5	0.704	INTRON nemy
2R	8555052	2R_8555052_INS [dm3] 2R_12667547_INS [dm6]	A	AATAAAGTT	8.449e^-5	0.704	INTRON nemy
2R	14218020	2R_14218020_SNP [dm3] 2R_18330515_SNP [dm6]	A	T	8.452e^-5	0.704	INTRON sbb
3L	12746368	3L_12746368_SNP [dm3] 3L_12753268_SNP [dm6]	C	T	8.516e^-5	0.704	UTR_3_PRIME CG10984 & 1 other
X	18737260	X_18737260_SNP [dm3] X_18843227_SNP [dm6]	A	C	8.556e^-5	0.704	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	16530006	2L_16530006_SNP [dm3] 2L_16530006_SNP [dm6]	G	A	8.573e^-5	0.704	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3R	6691058	3R_6691058_SNP [dm3] 3R_10865336_SNP [dm6]	T	G	8.574e^-5	0.704	UTR_3_PRIME SelR INTRON SelR
2L	20934678	2L_20934678_SNP [dm3] 2L_20934678_SNP [dm6]	T	C	8.610e^-5	0.704	UPSTREAM CG9270 INTERGENIC
2R	14230515	2R_14230515_SNP [dm3] 2R_18343010_SNP [dm6]	A	G	8.627e^-5	0.704	INTRON sbb
2L	884875	2L_884875_SNP [dm3] 2L_884875_SNP [dm6]	G	A	8.727e^-5	0.704	INTRON CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	884852	2L_884852_SNP [dm3] 2L_884852_SNP [dm6]	G	C	8.792e^-5	0.704	SPLICE_SITE_REGION CG15824 INTRON CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	7114083	3R_7114083_SNP [dm3] 3R_11288361_SNP [dm6]	C	G	8.832e^-5	0.704	INTRON CR31386
X	17087628	X_17087628_SNP [dm3] X_17193595_SNP [dm6]	A	T	8.868e^-5	0.704	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24488401	3R_24488401_INS [dm3] 3R_28662679_INS [dm6]	T	TT	8.890e^-5	0.704	INTERGENIC
3L	12128391	3L_12128391_SNP [dm3] 3L_12135291_SNP [dm6]	A	G	9.001e^-5	0.704	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12404315	2L_12404315_SNP [dm3] 2L_12404315_SNP [dm6]	A	C	9.010e^-5	0.704	INTRON vir-1
X	18737250	X_18737250_INS [dm3] X_18843217_INS [dm6]	A	ATCTGTATGCTG...	9.012e^-5	0.704	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	4403510	2L_4403510_SNP [dm3] 2L_4403510_SNP [dm6]	T	C	9.083e^-5	0.704	DOWNSTREAM CG15431 & 1 other INTRON Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2432152	X_2432152_SNP [dm3] X_2538119_SNP [dm6]	C	T	9.185e^-5	0.704	INTRON trol
2R	6942824	2R_6942824_SNP [dm3] 2R_11055319_SNP [dm6]	C	T	9.188e^-5	0.704	INTRON luna
3L	13084264	3L_13084264_SNP [dm3] 3L_13091164_SNP [dm6]	C	T	9.208e^-5	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	10636722	2R_10636722_SNP [dm3] 2R_14749217_SNP [dm6]	T	C	9.261e^-5	0.704	UPSTREAM AttB DOWNSTREAM Rpn6 INTERGENIC
3L	12743303	3L_12743303_SNP [dm3] 3L_12750203_SNP [dm6]	T	G	9.266e^-5	0.704	SPLICE_SITE_DONOR CG10984 UPSTREAM CG10984 & 1 other INTRON CG10984	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	849800	2L_849800_SNP [dm3] 2L_849800_SNP [dm6]	C	T	9.318e^-5	0.704	UPSTREAM CR44060 INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	12422006	X_12422006_SNP [dm3] X_12527973_SNP [dm6]	A	C	9.329e^-5	0.704	INTRON CG43921
X	18737254	X_18737254_SNP [dm3] X_18843221_SNP [dm6]	T	C	9.335e^-5	0.704	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	14228148	2L_14228148_SNP [dm3] 2L_14228148_SNP [dm6]	A	T	9.341e^-5	0.704	INTRON Dyrk2
2L	884863	2L_884863_SNP [dm3] 2L_884863_SNP [dm6]	A	G	9.366e^-5	0.704	INTRON CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	7568737	3L_7568737_SNP [dm3] 3L_7575637_SNP [dm6]	A	G	9.399e^-5	0.704	INTERGENIC
X	18171950	X_18171950_SNP [dm3] X_18277917_SNP [dm6]	G	A	9.407e^-5	0.704	INTRON upd3
X	15101072	X_15101072_SNP [dm3] X_15207039_SNP [dm6]	G	A	9.452e^-5	0.704	UPSTREAM CG32588 INTERGENIC
2L	6543258	2L_6543258_SNP [dm3] 2L_6543258_SNP [dm6]	C	T	9.470e^-5	0.704	INTRON eya	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26156486	3R_26156486_INS [dm3] 3R_30330764_INS [dm6]	G	GG	9.482e^-5	0.704	INTRON hdc
2L	8033585	2L_8033585_SNP [dm3] 2L_8033585_SNP [dm6]	C	G	9.518e^-5	0.704	INTRON CG7367 & 1 other
2L	12371048	2L_12371048_SNP [dm3] 2L_12371048_SNP [dm6]	G	A	9.557e^-5	0.704	INTRON bru-2
X	18737245	X_18737245_INS [dm3] X_18843212_INS [dm6]	A	TCTC	9.562e^-5	0.704	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	20891533	X_20891533_SNP [dm3] X_21020506_SNP [dm6]	T	C	9.573e^-5	0.704	INTERGENIC
3R	25398798	3R_25398798_SNP [dm3] 3R_29573076_SNP [dm6]	G	A	9.579e^-5	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4078788	2R_4078788_SNP [dm3] 2R_8191283_SNP [dm6]	G	A	9.618e^-5	0.704	INTRON LRP1	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	6234590	2L_6234590_SNP [dm3] 2L_6234590_SNP [dm6]	A	G	9.709e^-5	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	12289607	3R_12289607_SNP [dm3] 3R_16463885_SNP [dm6]	A	G	9.746e^-5	0.704	SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_sens
2L	9032444	2L_9032444_SNP [dm3] 2L_9032444_SNP [dm6]	T	C	9.874e^-5	0.704	UPSTREAM CG9582 & 1 other INTERGENIC
3L	17412712	3L_17412712_DEL [dm3] 3L_17419612_DEL [dm6]	CTGACGTACTATC...	C	9.875e^-5	0.704	INTRON blot	TF binding site BDTNP1_TFBS_da
3L	9418887	3L_9418887_SNP [dm3] 3L_9425787_SNP [dm6]	A	G	9.883e^-5	0.704	INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12421908	X_12421908_SNP [dm3] X_12527875_SNP [dm6]	A	G	9.884e^-5	0.704	INTRON CG43921
2L	2708000	2L_2708000_SNP [dm3] 2L_2708000_SNP [dm6]	A	T	1.002e^-4	0.704	INTRON CG31690
3R	24395369	3R_24395369_SNP [dm3] 3R_28569647_SNP [dm6]	G	A	1.005e^-4	0.704	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	16678653	2R_16678653_SNP [dm3] 2R_20791148_SNP [dm6]	G	A	1.012e^-4	0.704	UPSTREAM CG43667 & 1 other DOWNSTREAM CG43668 INTERGENIC
X	3782551	X_3782551_DEL [dm3] X_3888518_DEL [dm6]	TAACTTATAGCATATGCACT...	T	1.017e^-4	0.704	INTRON CG15239
X	18285886	X_18285886_SNP [dm3] X_18391853_SNP [dm6]	G	A	1.017e^-4	0.704	SYNONYMOUS_CODING CG32549	TF binding site mE1_TFBS_chinmo
3L	9989379	3L_9989379_SNP [dm3] 3L_9996279_SNP [dm6]	G	A	1.018e^-4	0.704	INTRON dpr6
3R	26495382	3R_26495382_SNP [dm3] 3R_30669660_SNP [dm6]	T	G	1.019e^-4	0.704	INTERGENIC
2R	17304951	2R_17304951_SNP [dm3] 2R_21417446_SNP [dm6]	T	A	1.019e^-4	0.704	UPSTREAM Sdc INTRON Sdc
2L	8150852	2L_8150852_SNP [dm3] 2L_8150852_SNP [dm6]	G	C	1.019e^-4	0.704	INTRON CG8552 & 1 other
2R	14439644	2R_14439644_INS [dm3] 2R_18552139_INS [dm6]	T	TT	1.019e^-4	0.704	INTERGENIC
2L	9532056	2L_9532056_SNP [dm3] 2L_9532056_SNP [dm6]	A	G	1.020e^-4	0.704	INTRON Oatp30B
2L	14496088	2L_14496088_SNP [dm3] 2L_14496088_SNP [dm6]	G	C	1.025e^-4	0.704	DOWNSTREAM tRNA:P:35Bd & 1 other INTERGENIC
2R	6943178	2R_6943178_SNP [dm3] 2R_11055673_SNP [dm6]	C	T	1.027e^-4	0.704	INTRON luna
2R	14820199	2R_14820199_SNP [dm3] 2R_18932694_SNP [dm6]	G	T	1.032e^-4	0.704	INTRON sano	TF binding site mE1_TFBS_inv
2R	18917185	2R_18917185_DEL [dm3] 2R_23029662_DEL [dm6]	TTTTTTCATTTATATTAAAG...	T	1.033e^-4	0.704	INTRON twi & 1 other
2R	18917210	2R_18917210_DEL [dm3] 2R_23029687_DEL [dm6]	ATCA	A	1.033e^-4	0.704	INTRON twi & 1 other
3R	12289661	3R_12289661_SNP [dm3] 3R_16463939_SNP [dm6]	T	A	1.036e^-4	0.704	SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_sens
2L	10008429	2L_10008429_INS [dm3] 2L_10008429_INS [dm6]	T	AA	1.042e^-4	0.704	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
2L	11428832	2L_11428832_SNP [dm3] 2L_11428832_SNP [dm6]	C	G	1.046e^-4	0.704	INTERGENIC
3L	16176518	3L_16176518_SNP [dm3] 3L_16183418_SNP [dm6]	T	C	1.049e^-4	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6792477	2R_6792477_SNP [dm3] 2R_10904972_SNP [dm6]	A	G	1.051e^-4	0.704	INTRON CG12943
3L	5712196	3L_5712196_SNP [dm3] 3L_5719096_SNP [dm6]	T	C	1.061e^-4	0.706	INTRON sif
2R	14434238	2R_14434238_INS [dm3] 2R_18546733_INS [dm6]	A	ACTTTTAT	1.064e^-4	0.706	INTRON Rgk2
2L	2356149	2L_2356149_SNP [dm3] 2L_2356149_SNP [dm6]	G	T	1.066e^-4	0.706	INTRON CG9967 & 1 other
3L	16972101	3L_16972101_SNP [dm3] 3L_16979001_SNP [dm6]	G	A	1.073e^-4	0.706	INTRON Exn
X	17033887	X_17033887_SNP [dm3] X_17139854_SNP [dm6]	T	C	1.074e^-4	0.706	NON_SYNONYMOUS_CODING mei-218 UTR_3_PRIME mei-217
X	20414898	X_20414898_INS [dm3] X_20543871_INS [dm6]	T	TTT	1.076e^-4	0.706	INTRON RunxB
2R	14558825	2R_14558825_SNP [dm3] 2R_18671320_SNP [dm6]	A	T	1.083e^-4	0.708	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11960437	2R_11960437_SNP [dm3] 2R_16072932_SNP [dm6]	C	G	1.094e^-4	0.709	INTERGENIC
3L	12744046	3L_12744046_SNP [dm3] 3L_12750946_SNP [dm6]	C	A	1.102e^-4	0.709	UPSTREAM Klc INTRON CG10984	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco
X	8129911	X_8129911_SNP [dm3] X_8235878_SNP [dm6]	C	G	1.103e^-4	0.709	SPLICE_SITE_REGION sdt INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15303226	2R_15303226_SNP [dm3] 2R_19415721_SNP [dm6]	C	A	1.104e^-4	0.709	DOWNSTREAM tRNA:CR30225 & 1 other INTRON hts	TF binding site BDTNP1_TFBS_twi
2L	2356184	2L_2356184_SNP [dm3] 2L_2356184_SNP [dm6]	C	T	1.110e^-4	0.709	INTRON CG9967 & 1 other
2R	4828706	2R_4828706_SNP [dm3] 2R_8941201_SNP [dm6]	C	G	1.110e^-4	0.709	UPSTREAM CR44273 DOWNSTREAM CG13748 INTERGENIC
3R	20322037	3R_20322037_SNP [dm3] 3R_24496315_SNP [dm6]	C	A	1.115e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6276630	2R_6276630_SNP [dm3] 2R_10389125_SNP [dm6]	C	A	1.122e^-4	0.709	INTRON CG42732
2R	6584766	2R_6584766_SNP [dm3] 2R_10697261_SNP [dm6]	C	G	1.124e^-4	0.709	INTRON stan
X	8129885	X_8129885_SNP [dm3] X_8235852_SNP [dm6]	A	C	1.125e^-4	0.709	INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18737186	X_18737186_SNP [dm3] X_18843153_SNP [dm6]	A	G	1.133e^-4	0.709	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	18737240	X_18737240_SNP [dm3] X_18843207_SNP [dm6]	A	T	1.133e^-4	0.709	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	9032471	2L_9032471_SNP [dm3] 2L_9032471_SNP [dm6]	A	G	1.135e^-4	0.709	UPSTREAM CG9582 & 1 other INTERGENIC
2R	6807272	2R_6807272_SNP [dm3] 2R_10919767_SNP [dm6]	G	T	1.139e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24166306	3R_24166306_SNP [dm3] 3R_28340584_SNP [dm6]	G	T	1.141e^-4	0.709	SYNONYMOUS_CODING Moca-cyp START_GAINED Moca-cyp UTR_5_PRIME Moca-cyp UPSTREAM Gfat2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22731513	3R_22731513_SNP [dm3] 3R_26905791_SNP [dm6]	G	C	1.152e^-4	0.711	INTRON T48	regulatory region REDfly_CRMs
3L	12128199	3L_12128199_SNP [dm3] 3L_12135099_SNP [dm6]	C	T	1.159e^-4	0.711	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad
2R	13528496	2R_13528496_SNP [dm3] 2R_17640991_SNP [dm6]	T	A	1.162e^-4	0.711	INTERGENIC
3L	6342017	3L_6342017_SNP [dm3] 3L_6348917_SNP [dm6]	T	A	1.163e^-4	0.711	INTRON CG13300
3R	8380743	3R_8380743_DEL [dm3] 3R_12555021_DEL [dm6]	TT	T	1.164e^-4	0.711	INTRON Octbeta2R
3L	12742947	3L_12742947_SNP [dm3] 3L_12749847_SNP [dm6]	G	C	1.173e^-4	0.714	UPSTREAM Klc & 1 other INTRON Klc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9122099	2L_9122099_SNP [dm3] 2L_9122099_SNP [dm6]	C	A	1.179e^-4	0.715	UPSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	16979592	2R_16979592_SNP [dm3] 2R_21092087_SNP [dm6]	G	T	1.185e^-4	0.715	UPSTREAM CG34396 INTERGENIC
2L	11972224	2L_11972224_SNP [dm3] 2L_11972224_SNP [dm6]	T	G	1.195e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
3R	18148033	3R_18148033_SNP [dm3] 3R_22322311_SNP [dm6]	A	G	1.196e^-4	0.715	INTRON CG34377
3R	25434780	3R_25434780_SNP [dm3] 3R_29609058_SNP [dm6]	G	A	1.197e^-4	0.715	DOWNSTREAM Diedel2 INTRON alph
3L	9514915	3L_9514915_SNP [dm3] 3L_9521815_SNP [dm6]	C	G	1.198e^-4	0.715	INTRON CG33700
3R	7924689	3R_7924689_SNP [dm3] 3R_12098967_SNP [dm6]	A	C	1.202e^-4	0.715	INTRON dpr17	TF binding site mE1_TFBS_HSA
2R	8555039	2R_8555039_SNP [dm3] 2R_12667534_SNP [dm6]	A	G	1.209e^-4	0.715	INTRON nemy
2L	20934695	2L_20934695_SNP [dm3] 2L_20934695_SNP [dm6]	A	C	1.229e^-4	0.715	UPSTREAM CG9270 INTERGENIC
2R	14218014	2R_14218014_SNP [dm3] 2R_18330509_SNP [dm6]	A	T	1.230e^-4	0.715	INTRON sbb
3R	25016530	3R_25016530_SNP [dm3] 3R_29190808_SNP [dm6]	G	A	1.233e^-4	0.715	INTRON CG14509
3L	16976429	3L_16976429_SNP [dm3] 3L_16983329_SNP [dm6]	A	G	1.238e^-4	0.715	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
3L	16314895	3L_16314895_SNP [dm3] 3L_16321795_SNP [dm6]	G	A	1.238e^-4	0.715	UPSTREAM CG42718 INTERGENIC
3L	16466796	3L_16466796_SNP [dm3] 3L_16473696_SNP [dm6]	C	G	1.240e^-4	0.715	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
2R	19187810	2R_19187810_SNP [dm3] 2R_23300287_SNP [dm6]	A	G	1.249e^-4	0.715	INTERGENIC
2R	1696738	2R_1696738_SNP [dm3] 2R_5809233_SNP [dm6]	G	A	1.250e^-4	0.715	INTRON dpr12	TF binding site BDTNP1_TFBS_dl
X	887659	X_887659_SNP [dm3] X_993626_SNP [dm6]	C	T	1.253e^-4	0.715	INTERGENIC
2R	3896561	2R_3896561_SNP [dm3] 2R_8009056_SNP [dm6]	T	A	1.258e^-4	0.715	UTR_3_PRIME Odc2 DOWNSTREAM CG14762
X	18737197	X_18737197_SNP [dm3] X_18843164_SNP [dm6]	G	A	1.266e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	16085195	3R_16085195_DEL [dm3] 3R_20259473_DEL [dm6]	AGTAAGTAAAGTA...	A	1.266e^-4	0.715	INTRON cic	TF binding site mE1_TFBS_zfh1
X	17033728	X_17033728_SNP [dm3] X_17139695_SNP [dm6]	G	A	1.283e^-4	0.715	NON_SYNONYMOUS_CODING mei-218 UTR_3_PRIME mei-217
2R	10530007	2R_10530007_SNP [dm3] 2R_14642502_SNP [dm6]	C	G	1.301e^-4	0.715	INTERGENIC
X	18737171	X_18737171_SNP [dm3] X_18843138_SNP [dm6]	C	A	1.304e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
2L	9543885	2L_9543885_SNP [dm3] 2L_9543885_SNP [dm6]	A	T	1.318e^-4	0.715	UPSTREAM CG13113 DOWNSTREAM Cpr30B INTERGENIC	TF binding site mE1_TFBS_cad
3R	16101695	3R_16101695_SNP [dm3] 3R_20275973_SNP [dm6]	A	G	1.329e^-4	0.715	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2996933	2R_2996933_SNP [dm3] 2R_7109428_SNP [dm6]	A	G	1.330e^-4	0.715	INTRON esn
X	18737023	X_18737023_SNP [dm3] X_18842990_SNP [dm6]	T	G	1.331e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
2R	16972108	2R_16972108_SNP [dm3] 2R_21084603_SNP [dm6]	C	T	1.335e^-4	0.715	SYNONYMOUS_CODING Treh INTRON Treh	TF binding site mE1_TFBS_cad
2R	18435713	2R_18435713_SNP [dm3] 2R_22548208_SNP [dm6]	G	A	1.338e^-4	0.715	INTRON px
2R	6270185	2R_6270185_SNP [dm3] 2R_10382680_SNP [dm6]	A	G	1.347e^-4	0.715	INTRON CG42732	TF binding site mE1_TFBS_sbb
2L	19839537	2L_19839537_SNP [dm3] 2L_19839537_SNP [dm6]	A	T	1.358e^-4	0.715	INTRON sick	TF binding site mE1_TFBS_HSA
X	18737090	X_18737090_DEL [dm3] X_18843057_DEL [dm6]	CCACGATTATCGCATACCCG...	C	1.368e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	transposable element FlyBase
2L	14687773	2L_14687773_SNP [dm3] 2L_14687773_SNP [dm6]	A	G	1.372e^-4	0.715	INTRON osp
3R	18252460	3R_18252460_SNP [dm3] 3R_22426738_SNP [dm6]	A	G	1.392e^-4	0.715	SPLICE_SITE_REGION CG13847 INTRON CG13847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9545046	2L_9545046_SNP [dm3] 2L_9545046_SNP [dm6]	C	A	1.394e^-4	0.715	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
3L	9396652	3L_9396652_SNP [dm3] 3L_9403552_SNP [dm6]	A	T	1.394e^-4	0.715	INTERGENIC
2R	20053086	2R_20053086_SNP [dm3] 2R_24165563_SNP [dm6]	G	C	1.396e^-4	0.715	INTRON CG3328
2L	20934681	2L_20934681_SNP [dm3] 2L_20934681_SNP [dm6]	G	C	1.397e^-4	0.715	UPSTREAM CG9270 INTERGENIC
3L	11798992	3L_11798992_SNP [dm3] 3L_11805892_SNP [dm6]	G	A	1.397e^-4	0.715	SYNONYMOUS_CODING CG42255
2R	5652554	2R_5652554_SNP [dm3] 2R_9765049_SNP [dm6]	A	G	1.398e^-4	0.715	SYNONYMOUS_CODING trpl
3R	21859517	3R_21859517_SNP [dm3] 3R_26033795_SNP [dm6]	A	T	1.406e^-4	0.715	UTR_3_PRIME E_spl_m6-BFM	TF binding site BDTNP1_TFBS_twi
2L	4403508	2L_4403508_SNP [dm3] 2L_4403508_SNP [dm6]	C	T	1.414e^-4	0.715	DOWNSTREAM CG15431 & 1 other INTRON Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8605483	2R_8605483_SNP [dm3] 2R_12717978_SNP [dm6]	G	A	1.418e^-4	0.715	INTRON CG42663	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3R	12289667	3R_12289667_SNP [dm3] 3R_16463945_SNP [dm6]	T	C	1.422e^-4	0.715	SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_sens
2R	20366150	2R_20366150_SNP [dm3] 2R_24478627_SNP [dm6]	C	T	1.423e^-4	0.715	INTRON CG13579
X	3782469	X_3782469_SNP [dm3] X_3888436_SNP [dm6]	T	A	1.424e^-4	0.715	INTRON CG15239
2R	10530001	2R_10530001_SNP [dm3] 2R_14642496_SNP [dm6]	A	T	1.435e^-4	0.715	INTERGENIC
3L	3637638	3L_3637638_SNP [dm3] 3L_3637638_SNP [dm6]	A	G	1.440e^-4	0.715	INTRON dar1
3R	17029158	3R_17029158_SNP [dm3] 3R_21203436_SNP [dm6]	A	T	1.443e^-4	0.715	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12168847	X_12168847_SNP [dm3] X_12274814_SNP [dm6]	T	G	1.444e^-4	0.715	NON_SYNONYMOUS_CODING CG45603 INTRON Ten-a
2L	4403493	2L_4403493_SNP [dm3] 2L_4403493_SNP [dm6]	T	C	1.445e^-4	0.715	DOWNSTREAM CG15431 & 1 other INTRON Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4104373	3L_4104373_SNP [dm3] 3L_4104373_SNP [dm6]	C	T	1.445e^-4	0.715	SYNONYMOUS_CODING Fit1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6451472	2R_6451472_DEL [dm3] 2R_10563967_DEL [dm6]	ACACTTTTGCGGACTAGTTG...	A	1.446e^-4	0.715	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	20041291	3R_20041291_INS [dm3] 3R_24215569_INS [dm6]	T	TT	1.450e^-4	0.715	UTR_3_PRIME CG17786 INTRON twin
X	18737163	X_18737163_SNP [dm3] X_18843130_SNP [dm6]	A	T	1.452e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
2R	4827864	2R_4827864_SNP [dm3] 2R_8940359_SNP [dm6]	A	G	1.453e^-4	0.715	UPSTREAM CG13748 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6921231	2R_6921231_SNP [dm3] 2R_11033726_SNP [dm6]	G	T	1.454e^-4	0.715	INTRON luna	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	18737168	X_18737168_SNP [dm3] X_18843135_SNP [dm6]	C	G	1.457e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	18737175	X_18737175_SNP [dm3] X_18843142_SNP [dm6]	C	G	1.457e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	18737252	X_18737252_SNP [dm3] X_18843219_SNP [dm6]	T	A	1.457e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	19442365	3R_19442365_SNP [dm3] 3R_23616643_SNP [dm6]	A	G	1.458e^-4	0.715	INTRON CG31145
3R	19442386	3R_19442386_SNP [dm3] 3R_23616664_SNP [dm6]	G	C	1.458e^-4	0.715	INTRON CG31145
2R	14439667	2R_14439667_SNP [dm3] 2R_18552162_SNP [dm6]	C	T	1.464e^-4	0.715	INTERGENIC
3R	18252458	3R_18252458_SNP [dm3] 3R_22426736_SNP [dm6]	A	G	1.464e^-4	0.715	SPLICE_SITE_REGION CG13847 INTRON CG13847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24391575	3R_24391575_SNP [dm3] 3R_28565853_SNP [dm6]	C	T	1.465e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	2273530	3L_2273530_SNP [dm3] 3L_2273530_SNP [dm6]	G	A	1.472e^-4	0.715	UPSTREAM tRNA:CR32303 & 1 other INTERGENIC
2R	13737353	2R_13737353_SNP [dm3] 2R_17849848_SNP [dm6]	G	C	1.474e^-4	0.715	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
3R	6370329	3R_6370329_SNP [dm3] 3R_10544607_SNP [dm6]	C	A	1.477e^-4	0.715	INTRON hth
3R	12289656	3R_12289656_SNP [dm3] 3R_16463934_SNP [dm6]	G	T	1.480e^-4	0.715	NON_SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_sens
2R	19344036	2R_19344036_SNP [dm3] 2R_23456513_SNP [dm6]	G	A	1.485e^-4	0.715	SYNONYMOUS_CODING CG43795	TF binding site mE1_TFBS_chinmo
2R	6270198	2R_6270198_SNP [dm3] 2R_10382693_SNP [dm6]	C	T	1.488e^-4	0.715	INTRON CG42732	TF binding site mE1_TFBS_sbb
2R	18187521	2R_18187521_SNP [dm3] 2R_22300016_SNP [dm6]	C	T	1.488e^-4	0.715	SYNONYMOUS_CODING wdp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8889892	X_8889892_SNP [dm3] X_8995859_SNP [dm6]	T	G	1.490e^-4	0.715	INTRON rdgA & 1 other	insulator Insulator_Class_II.mE01
X	18737255	X_18737255_SNP [dm3] X_18843222_SNP [dm6]	A	T	1.492e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	13297521	3L_13297521_SNP [dm3] 3L_13304421_SNP [dm6]	A	G	1.494e^-4	0.715	DOWNSTREAM CR44555 INTERGENIC
3R	26435491	3R_26435491_SNP [dm3] 3R_30609769_SNP [dm6]	G	A	1.494e^-4	0.715	UTR_3_PRIME CG31016
3L	10938215	3L_10938215_DEL [dm3] 3L_10945115_DEL [dm6]	GG	G	1.497e^-4	0.715	DOWNSTREAM CG34050 INTERGENIC
2L	14845076	2L_14845076_INS [dm3] 2L_14845076_INS [dm6]	A	ATGTA	1.505e^-4	0.715	UTR_3_PRIME CG15279
X	8891516	X_8891516_DEL [dm3] X_8997483_DEL [dm6]	CTC	C	1.507e^-4	0.715	INTRON rdgA & 1 other
X	12421861	X_12421861_SNP [dm3] X_12527828_SNP [dm6]	A	G	1.514e^-4	0.715	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
3R	16101589	3R_16101589_SNP [dm3] 3R_20275867_SNP [dm6]	G	A	1.517e^-4	0.715	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	20365538	2R_20365538_SNP [dm3] 2R_24478015_SNP [dm6]	C	T	1.522e^-4	0.715	INTRON CG13579	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13244659	3R_13244659_SNP [dm3] 3R_17418937_SNP [dm6]	C	A	1.526e^-4	0.715	SYNONYMOUS_CODING CG42834 DOWNSTREAM CG33333
2L	11922428	2L_11922428_SNP [dm3] 2L_11922428_SNP [dm6]	G	A	1.526e^-4	0.715	INTRON Pde1c
2R	16087329	2R_16087329_SNP [dm3] 2R_20199824_SNP [dm6]	A	T	1.526e^-4	0.715	INTERGENIC
3L	13735762	3L_13735762_SNP [dm3] 3L_13742662_SNP [dm6]	C	T	1.530e^-4	0.715	INTRON bru-3
3R	12289705	3R_12289705_SNP [dm3] 3R_16463983_SNP [dm6]	C	T	1.530e^-4	0.715	NON_SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_sens
2R	10529848	2R_10529848_SNP [dm3] 2R_14642343_SNP [dm6]	T	A	1.531e^-4	0.715	INTERGENIC
X	18737017	X_18737017_SNP [dm3] X_18842984_SNP [dm6]	A	T	1.534e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
2L	16525599	2L_16525599_SNP [dm3] 2L_16525599_SNP [dm6]	G	C	1.534e^-4	0.715	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
X	19020008	X_19020008_SNP [dm3] X_19125975_SNP [dm6]	T	A	1.537e^-4	0.715	INTRON tgy
X	18737234	X_18737234_SNP [dm3] X_18843201_SNP [dm6]	T	C	1.549e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	14392315	2L_14392315_SNP [dm3] 2L_14392315_SNP [dm6]	C	T	1.550e^-4	0.715	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
3R	24909336	3R_24909336_SNP [dm3] 3R_29083614_SNP [dm6]	C	T	1.551e^-4	0.715	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15225775	2L_15225775_SNP [dm3] 2L_15225775_SNP [dm6]	T	C	1.578e^-4	0.715	INTERGENIC
3R	3212144	3R_3212144_SNP [dm3] 3R_7386422_SNP [dm6]	T	C	1.591e^-4	0.715	INTERGENIC
X	18737156	X_18737156_SNP [dm3] X_18843123_SNP [dm6]	A	T	1.591e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3R	16075397	3R_16075397_SNP [dm3] 3R_20249675_SNP [dm6]	A	G	1.601e^-4	0.715	INTERGENIC
2L	8289770	2L_8289770_SNP [dm3] 2L_8289770_SNP [dm6]	A	G	1.605e^-4	0.715	UPSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	18737202	X_18737202_INS [dm3] X_18843169_INS [dm6]	TA	CGTGTGGCTTGT...	1.607e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14651063	3R_14651063_SNP [dm3] 3R_18825341_SNP [dm6]	T	A	1.611e^-4	0.715	INTRON CG18208
3L	3792233	3L_3792233_SNP [dm3] 3L_3792233_SNP [dm6]	T	A	1.615e^-4	0.715	DOWNSTREAM CG32266 INTRON CG32264
2R	6451470	2R_6451470_SNP [dm3] 2R_10563965_SNP [dm6]	G	A	1.617e^-4	0.715	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	13609385	3R_13609385_SNP [dm3] 3R_17783663_SNP [dm6]	G	A	1.620e^-4	0.715	SYNONYMOUS_CODING CG43102 UPSTREAM CG43102	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18737165	X_18737165_SNP [dm3] X_18843132_SNP [dm6]	A	T	1.623e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3R	24391284	3R_24391284_SNP [dm3] 3R_28565562_SNP [dm6]	G	T	1.624e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	17304934	2R_17304934_SNP [dm3] 2R_21417429_SNP [dm6]	T	G	1.639e^-4	0.715	UPSTREAM Sdc INTRON Sdc
3L	8275803	3L_8275803_SNP [dm3] 3L_8282703_SNP [dm6]	C	T	1.639e^-4	0.715	UTR_3_PRIME cert DOWNSTREAM Dscam4
2R	14559018	2R_14559018_SNP [dm3] 2R_18671513_SNP [dm6]	T	C	1.640e^-4	0.715	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14848401	2L_14848401_SNP [dm3] 2L_14848401_SNP [dm6]	T	A	1.641e^-4	0.715	INTRON CG15279
3L	6362198	3L_6362198_SNP [dm3] 3L_6369098_SNP [dm6]	G	A	1.642e^-4	0.715	DOWNSTREAM CR45419 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14677091	2L_14677091_SNP [dm3] 2L_14677091_SNP [dm6]	T	A	1.642e^-4	0.715	INTRON osp
2L	9032038	2L_9032038_SNP [dm3] 2L_9032038_SNP [dm6]	G	C	1.650e^-4	0.715	UPSTREAM CG9582 & 1 other INTERGENIC
3L	1920808	3L_1920808_SNP [dm3] 3L_1920808_SNP [dm6]	T	C	1.655e^-4	0.715	UPSTREAM Dbx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18022391	X_18022391_SNP [dm3] X_18128358_SNP [dm6]	A	C	1.659e^-4	0.715	DOWNSTREAM mir-210 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19442459	2R_19442459_SNP [dm3] 2R_23554936_SNP [dm6]	C	A	1.662e^-4	0.715	UPSTREAM pita DOWNSTREAM Rrp4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20368597	2R_20368597_SNP [dm3] 2R_24481074_SNP [dm6]	A	G	1.665e^-4	0.715	INTRON CG13579	TF binding site mE1_TFBS_chinmo
2L	10241126	2L_10241126_SNP [dm3] 2L_10241126_SNP [dm6]	C	T	1.666e^-4	0.715	SPLICE_SITE_REGION me31B INTRON me31B	TF binding site mE1_TFBS_sens
X	6137389	X_6137389_SNP [dm3] X_6243356_SNP [dm6]	G	A	1.671e^-4	0.715	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14428638	2R_14428638_SNP [dm3] 2R_18541133_SNP [dm6]	T	G	1.676e^-4	0.715	INTRON Rgk2	TF binding site mE1_TFBS_chinmo
X	18737227	X_18737227_SNP [dm3] X_18843194_SNP [dm6]	A	T	1.698e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18737229	X_18737229_SNP [dm3] X_18843196_SNP [dm6]	A	T	1.698e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	18855250	2L_18855250_SNP [dm3] 2L_18855250_SNP [dm6]	G	A	1.701e^-4	0.715	UTR_3_PRIME CG10602 DOWNSTREAM CG17321	TF binding site mE1_TFBS_cad
2L	15197043	2L_15197043_SNP [dm3] 2L_15197043_SNP [dm6]	C	G	1.702e^-4	0.715	INTRON CG4168
3L	9611475	3L_9611475_SNP [dm3] 3L_9618375_SNP [dm6]	A	G	1.703e^-4	0.715	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
X	5027252	X_5027252_SNP [dm3] X_5133219_SNP [dm6]	A	G	1.707e^-4	0.715	DOWNSTREAM Rpn13R INTRON rg & 1 other
2R	14439669	2R_14439669_SNP [dm3] 2R_18552164_SNP [dm6]	T	C	1.708e^-4	0.715	INTERGENIC
3L	7987660	3L_7987660_SNP [dm3] 3L_7994560_SNP [dm6]	C	T	1.710e^-4	0.715	INTRON nmo
3R	23318856	3R_23318856_SNP [dm3] 3R_27493134_SNP [dm6]	C	G	1.713e^-4	0.715	INTERGENIC
2R	19246038	2R_19246038_SNP [dm3] 2R_23358515_SNP [dm6]	G	T	1.714e^-4	0.715	UPSTREAM CG3500 & 2 others DOWNSTREAM CG9875 EXON CR44168
3L	16975630	3L_16975630_SNP [dm3] 3L_16982530_SNP [dm6]	T	A	1.714e^-4	0.715	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
X	18737019	X_18737019_SNP [dm3] X_18842986_SNP [dm6]	G	C	1.719e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3L	9418886	3L_9418886_SNP [dm3] 3L_9425786_SNP [dm6]	A	G	1.723e^-4	0.715	INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14416334	2R_14416334_SNP [dm3] 2R_18528829_SNP [dm6]	G	A	1.726e^-4	0.715	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12712526	2R_12712526_SNP [dm3] 2R_16825021_SNP [dm6]	C	G	1.737e^-4	0.715	UPSTREAM CG34459 INTRON CG34459
2L	17915106	2L_17915106_SNP [dm3] 2L_17915106_SNP [dm6]	A	C	1.741e^-4	0.715	UPSTREAM CG43271 INTERGENIC
2R	16319139	2R_16319139_SNP [dm3] 2R_20431634_SNP [dm6]	G	T	1.742e^-4	0.715	INTRON CG12484
3L	5676079	3L_5676079_SNP [dm3] 3L_5682979_SNP [dm6]	G	C	1.748e^-4	0.715	INTRON sif
X	13341635	X_13341635_SNP [dm3] X_13447602_SNP [dm6]	G	A	1.748e^-4	0.715	INTRON Neto
3R	25814707	3R_25814707_SNP [dm3] 3R_29988985_SNP [dm6]	C	T	1.756e^-4	0.715	SYNONYMOUS_CODING CG7896	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	6404075	3R_6404075_DEL [dm3] 3R_10578353_DEL [dm6]	GA	G	1.762e^-4	0.715	INTRON hth	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16099698	3R_16099698_SNP [dm3] 3R_20273976_SNP [dm6]	G	A	1.765e^-4	0.715	INTRON cic
3R	12289893	3R_12289893_SNP [dm3] 3R_16464171_SNP [dm6]	T	A	1.765e^-4	0.715	NON_SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_sens
2R	6923942	2R_6923942_SNP [dm3] 2R_11036437_SNP [dm6]	A	T	1.766e^-4	0.715	INTRON luna
3L	4734489	3L_4734489_SNP [dm3] 3L_4734489_SNP [dm6]	T	C	1.774e^-4	0.715	INTRON RhoGEF64C
3R	25434701	3R_25434701_SNP [dm3] 3R_29608979_SNP [dm6]	T	A	1.776e^-4	0.715	DOWNSTREAM Diedel2 INTRON alph
2R	6819446	2R_6819446_SNP [dm3] 2R_10931941_SNP [dm6]	G	A	1.777e^-4	0.715	INTERGENIC
X	2690165	X_2690165_SNP [dm3] X_2796132_SNP [dm6]	G	C	1.778e^-4	0.715	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	6274744	2R_6274744_SNP [dm3] 2R_10387239_SNP [dm6]	A	G	1.780e^-4	0.715	INTRON CG42732
3L	4293054	3L_4293054_SNP [dm3] 3L_4293054_SNP [dm6]	T	C	1.787e^-4	0.715	SYNONYMOUS_CODING CG1319 UPSTREAM CG15012 DOWNSTREAM dyl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	14439882	2R_14439882_SNP [dm3] 2R_18552377_SNP [dm6]	T	C	1.787e^-4	0.715	INTERGENIC
3R	8452180	3R_8452180_SNP [dm3] 3R_12626458_SNP [dm6]	G	T	1.788e^-4	0.715	INTRON Vha55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	8452182	3R_8452182_SNP [dm3] 3R_12626460_SNP [dm6]	C	T	1.788e^-4	0.715	INTRON Vha55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	12565806	X_12565806_DEL [dm3] X_12671773_DEL [dm6]	GG	G	1.788e^-4	0.715	INTRON Tis11
2R	12103249	2R_12103249_SNP [dm3] 2R_16215744_SNP [dm6]	T	A	1.788e^-4	0.715	INTRON mrj
3R	25398623	3R_25398623_SNP [dm3] 3R_29572901_SNP [dm6]	G	A	1.795e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11484548	3L_11484548_INS [dm3] 3L_11491448_INS [dm6]	T	TCT	1.802e^-4	0.715	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14444066	2R_14444066_INS [dm3] 2R_18556561_INS [dm6]	T	TGT	1.803e^-4	0.715	INTRON GEFmeso
2R	3578056	2R_3578056_SNP [dm3] 2R_7690551_SNP [dm6]	A	T	1.804e^-4	0.715	INTRON CG1399
2R	14224398	2R_14224398_INS [dm3] 2R_18336893_INS [dm6]	G	GT	1.805e^-4	0.715	INTRON sbb
X	14720679	X_14720679_SNP [dm3] X_14826646_SNP [dm6]	G	T	1.810e^-4	0.715	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1197875	2L_1197875_SNP [dm3] 2L_1197875_SNP [dm6]	G	A	1.812e^-4	0.715	DOWNSTREAM CG5139 INTERGENIC
3R	15191270	3R_15191270_SNP [dm3] 3R_19365548_SNP [dm6]	G	C	1.816e^-4	0.715	INTERGENIC
X	18737238	X_18737238_SNP [dm3] X_18843205_SNP [dm6]	C	A	1.819e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	19244050	2R_19244050_SNP [dm3] 2R_23356527_SNP [dm6]	A	G	1.826e^-4	0.715	SYNONYMOUS_CODING CG3500 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	18286355	3R_18286355_SNP [dm3] 3R_22460633_SNP [dm6]	T	G	1.830e^-4	0.715	UTR_3_PRIME CG34376 DOWNSTREAM Rpn7
2R	5643555	2R_5643555_SNP [dm3] 2R_9756050_SNP [dm6]	G	A	1.832e^-4	0.715	NON_SYNONYMOUS_CODING trpl DOWNSTREAM CG1690
X	20891594	X_20891594_SNP [dm3] X_21020567_SNP [dm6]	G	C	1.833e^-4	0.715	INTERGENIC
X	20683589	X_20683589_SNP [dm3] X_20812562_SNP [dm6]	G	C	1.834e^-4	0.715	INTRON shakB
3L	16992315	3L_16992315_SNP [dm3] 3L_16999215_SNP [dm6]	C	T	1.839e^-4	0.715	SYNONYMOUS_CODING CG3764 UPSTREAM mir-2500	TF binding site mE1_TFBS_chinmo
X	18737207	X_18737207_SNP [dm3] X_18843174_SNP [dm6]	C	T	1.842e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19237762	2R_19237762_SNP [dm3] 2R_23350239_SNP [dm6]	T	A	1.844e^-4	0.715	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6461164	3R_6461164_SNP [dm3] 3R_10635442_SNP [dm6]	A	C	1.844e^-4	0.715	INTRON hth
3R	10515286	3R_10515286_DEL [dm3] 3R_14689564_DEL [dm6]	GAAA	G	1.847e^-4	0.715	INTRON Meltrin
3L	9423122	3L_9423122_SNP [dm3] 3L_9430022_SNP [dm6]	T	A	1.852e^-4	0.715	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12740687	3L_12740687_SNP [dm3] 3L_12747587_SNP [dm6]	C	T	1.863e^-4	0.715	SYNONYMOUS_CODING Klc DOWNSTREAM CG32109
X	5456310	X_5456310_SNP [dm3] X_5562277_SNP [dm6]	C	T	1.863e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25909092	3R_25909092_SNP [dm3] 3R_30083370_SNP [dm6]	T	A	1.864e^-4	0.715	INTRON sima
2R	4417130	2R_4417130_INS [dm3] 2R_8529625_INS [dm6]	C	CAAGTGAAAATGAA...	1.865e^-4	0.715	INTRON mtt	transposable element FlyBase
3L	1255988	3L_1255988_INS [dm3] 3L_1255988_INS [dm6]	A	AGGA	1.865e^-4	0.715	UPSTREAM CG9134 DOWNSTREAM CG9130 & 1 other INTERGENIC
2R	8532481	2R_8532481_SNP [dm3] 2R_12644976_SNP [dm6]	C	T	1.866e^-4	0.715	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9189758	3L_9189758_SNP [dm3] 3L_9196658_SNP [dm6]	A	G	1.872e^-4	0.715	INTERGENIC
2R	11975923	2R_11975923_SNP [dm3] 2R_16088418_SNP [dm6]	C	A	1.873e^-4	0.715	INTRON Dg
X	18737236	X_18737236_SNP [dm3] X_18843203_SNP [dm6]	G	A	1.878e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	9369142	2R_9369142_SNP [dm3] 2R_13481637_SNP [dm6]	C	T	1.883e^-4	0.715	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	3217357	3R_3217357_SNP [dm3] 3R_7391635_SNP [dm6]	C	T	1.891e^-4	0.715	SYNONYMOUS_CODING CG42650
X	12941081	X_12941081_SNP [dm3] X_13047048_SNP [dm6]	T	C	1.896e^-4	0.715	INTRON rad
2R	14437748	2R_14437748_DEL [dm3] 2R_18550243_DEL [dm6]	AA	A	1.896e^-4	0.715	INTERGENIC
X	18737241	X_18737241_SNP [dm3] X_18843208_SNP [dm6]	A	C	1.897e^-4	0.715	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	16532331	2L_16532331_SNP [dm3] 2L_16532331_SNP [dm6]	G	T	1.901e^-4	0.715	INTRON CG5953	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
3L	11020960	3L_11020960_SNP [dm3] 3L_11027860_SNP [dm6]	G	A	1.904e^-4	0.715	NON_SYNONYMOUS_CODING CG32081 DOWNSTREAM CG32079
2L	14977938	2L_14977938_SNP [dm3] 2L_14977938_SNP [dm6]	C	A	1.908e^-4	0.715	INTRON mol
2R	6634961	2R_6634961_DEL [dm3] 2R_10747456_DEL [dm6]	TG	T	1.911e^-4	0.715	INTRON CG33144
3L	12740576	3L_12740576_SNP [dm3] 3L_12747476_SNP [dm6]	G	A	1.925e^-4	0.715	SYNONYMOUS_CODING Klc DOWNSTREAM CG32109
2R	18212137	2R_18212137_SNP [dm3] 2R_22324632_SNP [dm6]	A	G	1.926e^-4	0.715	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26655606	3R_26655606_SNP [dm3] 3R_30829884_SNP [dm6]	G	A	1.927e^-4	0.715	INTRON CG15544
3L	2365259	3L_2365259_SNP [dm3] 3L_2365259_SNP [dm6]	G	T	1.927e^-4	0.715	INTERGENIC
3R	2795128	3R_2795128_SNP [dm3] 3R_6969406_SNP [dm6]	C	T	1.936e^-4	0.715	INTRON Antp	TF binding site mE1_TFBS_inv
3R	19442246	3R_19442246_SNP [dm3] 3R_23616524_SNP [dm6]	T	C	1.937e^-4	0.715	INTRON CG31145
2L	6450540	2L_6450540_SNP [dm3] 2L_6450540_SNP [dm6]	G	A	1.938e^-4	0.715	INTRON retm
X	12421985	X_12421985_DEL [dm3] X_12527952_DEL [dm6]	CTAACAC	C	1.940e^-4	0.715	INTRON CG43921
3L	12128223	3L_12128223_SNP [dm3] 3L_12135123_SNP [dm6]	A	G	1.945e^-4	0.716	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12609718	2R_12609718_SNP [dm3] 2R_16722213_SNP [dm6]	T	C	1.958e^-4	0.719	INTRON CG30463
X	18093657	X_18093657_SNP [dm3] X_18199624_SNP [dm6]	A	C	1.966e^-4	0.719	INTRON Frq2
X	12422061	X_12422061_SNP [dm3] X_12528028_SNP [dm6]	A	G	1.969e^-4	0.719	INTRON CG43921
2L	7680868	2L_7680868_SNP [dm3] 2L_7680868_SNP [dm6]	A	T	1.970e^-4	0.719	SYNONYMOUS_CODING Myo28B1
2L	5657585	2L_5657585_SNP [dm3] 2L_5657585_SNP [dm6]	G	A	1.981e^-4	0.721	INTRON CG31646
3R	20322060	3R_20322060_SNP [dm3] 3R_24496338_SNP [dm6]	C	T	1.991e^-4	0.721	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14648539	2R_14648539_SNP [dm3] 2R_18761034_SNP [dm6]	G	T	1.993e^-4	0.721	UTR_5_PRIME Jabba UPSTREAM Jabba & 1 other
2R	17305040	2R_17305040_SNP [dm3] 2R_21417535_SNP [dm6]	C	T	1.994e^-4	0.721	UPSTREAM Sdc INTRON Sdc
2R	6270278	2R_6270278_SNP [dm3] 2R_10382773_SNP [dm6]	A	G	1.996e^-4	0.721	INTRON CG42732
3L	14147587	3L_14147587_SNP [dm3] 3L_14154487_SNP [dm6]	T	C	2.005e^-4	0.722	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15286142	3R_15286142_DEL [dm3] 3R_19460420_DEL [dm6]	TTCCAAGTA	T	2.009e^-4	0.722	UPSTREAM Dys DOWNSTREAM CG31221 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14760371	2R_14760371_SNP [dm3] 2R_18872866_SNP [dm6]	G	A	2.015e^-4	0.722	INTERGENIC
3L	9423114	3L_9423114_DEL [dm3] 3L_9430014_DEL [dm6]	CCTAAAT	C	2.021e^-4	0.722	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9984951	3L_9984951_SNP [dm3] 3L_9991851_SNP [dm6]	A	C	2.030e^-4	0.722	INTRON dpr6
3L	6259628	3L_6259628_SNP [dm3] 3L_6266528_SNP [dm6]	A	T	2.038e^-4	0.722	INTERGENIC
3R	21147769	3R_21147769_SNP [dm3] 3R_25322047_SNP [dm6]	C	G	2.044e^-4	0.722	NON_SYNONYMOUS_CODING CG10562
3R	21147770	3R_21147770_SNP [dm3] 3R_25322048_SNP [dm6]	G	A	2.044e^-4	0.722	SYNONYMOUS_CODING CG10562
2L	1597516	2L_1597516_SNP [dm3] 2L_1597516_SNP [dm6]	T	A	2.053e^-4	0.722	INTRON haf & 1 other	TF binding site mE1_TFBS_chinmo
3R	16716576	3R_16716576_SNP [dm3] 3R_20890854_SNP [dm6]	T	C	2.054e^-4	0.722	UPSTREAM tRNA:CR31334 & 1 other DOWNSTREAM tRNA:CR31480 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	15197468	2L_15197468_SNP [dm3] 2L_15197468_SNP [dm6]	G	A	2.059e^-4	0.722	INTRON CG4168
2L	15854825	2L_15854825_SNP [dm3] 2L_15854825_SNP [dm6]	C	T	2.072e^-4	0.722	SYNONYMOUS_CODING Tektin-A DOWNSTREAM CG13243
2R	11834391	2R_11834391_SNP [dm3] 2R_15946886_SNP [dm6]	C	A	2.076e^-4	0.722	NON_SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other
X	18285598	X_18285598_SNP [dm3] X_18391565_SNP [dm6]	A	G	2.081e^-4	0.722	SYNONYMOUS_CODING CG32549	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14493160	2L_14493160_SNP [dm3] 2L_14493160_SNP [dm6]	A	G	2.083e^-4	0.722	SYNONYMOUS_STOP noc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9921132	3L_9921132_SNP [dm3] 3L_9928032_SNP [dm6]	T	C	2.093e^-4	0.722	INTRON CG34356	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5114166	X_5114166_SNP [dm3] X_5220133_SNP [dm6]	A	G	2.100e^-4	0.722	INTRON CG15465 & 1 other
2L	9544942	2L_9544942_SNP [dm3] 2L_9544942_SNP [dm6]	T	G	2.100e^-4	0.722	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
3R	17574937	3R_17574937_SNP [dm3] 3R_21749215_SNP [dm6]	G	A	2.103e^-4	0.722	UPSTREAM CG31233 DOWNSTREAM CG31343 INTERGENIC
3R	4352402	3R_4352402_SNP [dm3] 3R_8526680_SNP [dm6]	A	T	2.104e^-4	0.722	DOWNSTREAM CG31259 INTERGENIC
X	18792209	X_18792209_SNP [dm3] X_18898176_SNP [dm6]	T	C	2.109e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14758172	2R_14758172_SNP [dm3] 2R_18870667_SNP [dm6]	A	G	2.117e^-4	0.722	INTERGENIC
3R	18425445	3R_18425445_SNP [dm3] 3R_22599723_SNP [dm6]	T	C	2.119e^-4	0.722	SYNONYMOUS_CODING Efa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11701522	3R_11701522_SNP [dm3] 3R_15875800_SNP [dm6]	G	T	2.130e^-4	0.722	UTR_5_PRIME CG31183
2R	1773775	2R_1773775_SNP [dm3] 2R_5886270_SNP [dm6]	G	A	2.131e^-4	0.722	EXON CR44125	TF binding site mE1_TFBS_cnc
3L	2359671	3L_2359671_SNP [dm3] 3L_2359671_SNP [dm6]	C	A	2.134e^-4	0.722	UPSTREAM CG13801 INTERGENIC
X	18737015	X_18737015_SNP [dm3] X_18842982_SNP [dm6]	A	T	2.134e^-4	0.722	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3L	10310380	3L_10310380_DEL [dm3] 3L_10317280_DEL [dm6]	AA	A	2.139e^-4	0.722	INTERGENIC
X	18093716	X_18093716_SNP [dm3] X_18199683_SNP [dm6]	T	C	2.141e^-4	0.722	INTRON Frq2
2L	14677168	2L_14677168_SNP [dm3] 2L_14677168_SNP [dm6]	G	A	2.141e^-4	0.722	INTRON osp
3L	4739512	3L_4739512_SNP [dm3] 3L_4739512_SNP [dm6]	C	G	2.143e^-4	0.722	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
X	18763332	X_18763332_SNP [dm3] X_18869299_SNP [dm6]	T	C	2.145e^-4	0.722	INTRON CG34401	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4186610	2R_4186610_SNP [dm3] 2R_8299105_SNP [dm6]	C	T	2.155e^-4	0.722	DOWNSTREAM mir-280 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1288381	3L_1288381_SNP [dm3] 3L_1288381_SNP [dm6]	C	G	2.176e^-4	0.722	DOWNSTREAM CG32333 INTRON CG32333
2L	7503176	2L_7503176_SNP [dm3] 2L_7503176_SNP [dm6]	T	C	2.177e^-4	0.722	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21841457	2L_21841457_SNP [dm3] 2L_21841457_SNP [dm6]	C	T	2.180e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17272748	2L_17272748_SNP [dm3] 2L_17272748_SNP [dm6]	A	T	2.182e^-4	0.722	INTERGENIC
2R	14439933	2R_14439933_SNP [dm3] 2R_18552428_SNP [dm6]	A	C	2.183e^-4	0.722	INTERGENIC
X	12941068	X_12941068_SNP [dm3] X_13047035_SNP [dm6]	G	T	2.183e^-4	0.722	INTRON rad
3L	12740738	3L_12740738_SNP [dm3] 3L_12747638_SNP [dm6]	A	G	2.186e^-4	0.722	SYNONYMOUS_CODING Klc DOWNSTREAM CG32109
X	14377985	X_14377985_DEL [dm3] X_14483952_DEL [dm6]	GG	G	2.191e^-4	0.722	INTERGENIC
3R	23321310	3R_23321310_SNP [dm3] 3R_27495588_SNP [dm6]	T	C	2.192e^-4	0.722	INTERGENIC
3R	20465361	3R_20465361_SNP [dm3] 3R_24639639_SNP [dm6]	C	T	2.199e^-4	0.722	DOWNSTREAM puf INTRON puf	TF binding site mE1_TFBS_chinmo
3L	2749639	3L_2749639_DEL [dm3] 3L_2749639_DEL [dm6]	AA	A	2.200e^-4	0.722	INTRON Mrtf
3L	19355806	3L_19355806_SNP [dm3] 3L_19362706_SNP [dm6]	C	A	2.203e^-4	0.722	INTRON CG32206
2L	10034793	2L_10034793_SNP [dm3] 2L_10034793_SNP [dm6]	C	A	2.209e^-4	0.722	INTRON obst-B
2L	6234638	2L_6234638_SNP [dm3] 2L_6234638_SNP [dm6]	C	A	2.209e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	13023770	3R_13023770_SNP [dm3] 3R_17198048_SNP [dm6]	T	A	2.211e^-4	0.722	INTRON Mur89F
2R	14439650	2R_14439650_SNP [dm3] 2R_18552145_SNP [dm6]	C	T	2.216e^-4	0.722	INTERGENIC
X	18173144	X_18173144_SNP [dm3] X_18279111_SNP [dm6]	G	A	2.217e^-4	0.722	INTRON upd3
3R	20322047	3R_20322047_SNP [dm3] 3R_24496325_SNP [dm6]	T	G	2.228e^-4	0.722	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16065865	3R_16065865_DEL [dm3] 3R_20240143_DEL [dm6]	AT	A	2.233e^-4	0.722	INTRON Nlg4
3R	3216044	3R_3216044_SNP [dm3] 3R_7390322_SNP [dm6]	A	G	2.248e^-4	0.722	INTERGENIC
2R	2912040	2R_2912040_SNP [dm3] 2R_7024535_SNP [dm6]	T	A	2.251e^-4	0.722	UPSTREAM Tsp42Ef & 1 other INTERGENIC
2R	15120383	2R_15120383_SNP [dm3] 2R_19232878_SNP [dm6]	C	T	2.252e^-4	0.722	INTRON cora	TF binding site mE1_TFBS_HSA
3R	10328113	3R_10328113_DEL [dm3] 3R_14502391_DEL [dm6]	TTTCCTTCTCTCATT...	T	2.254e^-4	0.722	INTRON CR44177
2R	13285845	2R_13285845_INS [dm3] 2R_17398340_INS [dm6]	C	CGAGT	2.259e^-4	0.722	INTRON Sip1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17909333	3R_17909333_SNP [dm3] 3R_22083611_SNP [dm6]	G	A	2.263e^-4	0.722	DOWNSTREAM CG13408 INTERGENIC
3R	20546545	3R_20546545_SNP [dm3] 3R_24720823_SNP [dm6]	T	C	2.266e^-4	0.722	INTRON tok	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18200328	2R_18200328_DEL [dm3] 2R_22312823_DEL [dm6]	TCGCACTCGCCTTGTTTGTT...	T	2.269e^-4	0.722	UPSTREAM CR44758 & 1 other INTERGENIC
2R	20394264	2R_20394264_SNP [dm3] 2R_24506741_SNP [dm6]	A	G	2.277e^-4	0.722	UPSTREAM CG13581 INTERGENIC
2L	10703978	2L_10703978_SNP [dm3] 2L_10703978_SNP [dm6]	G	A	2.277e^-4	0.722	SYNONYMOUS_CODING CG6415 INTRON Lip2
X	9941996	X_9941996_SNP [dm3] X_10047963_SNP [dm6]	C	T	2.288e^-4	0.722	INTRON Cht6 EXON CR45185 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16085331	2R_16085331_SNP [dm3] 2R_20197826_SNP [dm6]	A	C	2.292e^-4	0.722	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9147679	3L_9147679_SNP [dm3] 3L_9154579_SNP [dm6]	T	G	2.292e^-4	0.722	INTRON Rdl	TF binding site BDTNP1_TFBS_dl
2L	6706434	2L_6706434_SNP [dm3] 2L_6706434_SNP [dm6]	A	G	2.298e^-4	0.722	INTRON Tsp
3R	3204267	3R_3204267_INS [dm3] 3R_7378545_INS [dm6]	A	AG	2.299e^-4	0.722	INTERGENIC
3L	11038439	3L_11038439_DEL [dm3] 3L_11045339_DEL [dm6]	ACAACAA	A	2.302e^-4	0.722	INTRON CG43693	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	26599159	3R_26599159_SNP [dm3] 3R_30773437_SNP [dm6]	C	T	2.305e^-4	0.722	INTRON zfh1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	3782537	X_3782537_SNP [dm3] X_3888504_SNP [dm6]	C	T	2.305e^-4	0.722	INTRON CG15239
3R	24541304	3R_24541304_SNP [dm3] 3R_28715582_SNP [dm6]	G	C	2.307e^-4	0.722	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	11917306	2L_11917306_SNP [dm3] 2L_11917306_SNP [dm6]	G	T	2.318e^-4	0.722	INTRON Pde1c
2R	14409991	2R_14409991_SNP [dm3] 2R_18522486_SNP [dm6]	C	T	2.321e^-4	0.722	INTRON CG43066	TF binding site mE1_TFBS_chinmo
2R	19295792	2R_19295792_SNP [dm3] 2R_23408269_SNP [dm6]	G	T	2.322e^-4	0.722	INTERGENIC
2R	19251220	2R_19251220_SNP [dm3] 2R_23363697_SNP [dm6]	G	T	2.326e^-4	0.722	NON_SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11370934	3L_11370934_SNP [dm3] 3L_11377834_SNP [dm6]	A	C	2.329e^-4	0.722	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6846006	2R_6846006_SNP [dm3] 2R_10958501_SNP [dm6]	C	A	2.336e^-4	0.722	INTERGENIC
2L	16583916	2L_16583916_SNP [dm3] 2L_16583916_SNP [dm6]	G	A	2.341e^-4	0.722	INTRON CG42389	TF binding site mE1_TFBS_bab1
3L	9423107	3L_9423107_DEL [dm3] 3L_9430007_DEL [dm6]	AATG	A	2.342e^-4	0.722	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	8530718	X_8530718_SNP [dm3] X_8636685_SNP [dm6]	C	A	2.345e^-4	0.722	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	16544269	2L_16544269_SNP [dm3] 2L_16544269_SNP [dm6]	C	A	2.345e^-4	0.722	UPSTREAM CG42389 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	2767502	X_2767502_SNP [dm3] X_2873469_SNP [dm6]	C	A	2.346e^-4	0.722	UPSTREAM CG14416 INTRON kirre
X	21870100	X_21870100_SNP [dm3] X_22468264_SNP [dm6]	A	G	2.346e^-4	0.722	UTR_3_PRIME CG14619
2R	13744132	2R_13744132_SNP [dm3] 2R_17856627_SNP [dm6]	T	A	2.356e^-4	0.722	UTR_5_PRIME olf186-F INTRON olf186-F
2L	14088780	2L_14088780_SNP [dm3] 2L_14088780_SNP [dm6]	C	A	2.366e^-4	0.722	SYNONYMOUS_CODING nAChRalpha5
2R	6676295	2R_6676295_SNP [dm3] 2R_10788790_SNP [dm6]	C	T	2.369e^-4	0.722	INTRON CG33144
2R	6451452	2R_6451452_SNP [dm3] 2R_10563947_SNP [dm6]	A	T	2.369e^-4	0.722	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	9531481	2L_9531481_DEL [dm3] 2L_9531481_DEL [dm6]	CAACTC	G	2.370e^-4	0.722	INTRON Oatp30B
2R	6342605	2R_6342605_SNP [dm3] 2R_10455100_SNP [dm6]	T	A	2.370e^-4	0.722	INTRON Galphao & 1 other
3L	12742351	3L_12742351_SNP [dm3] 3L_12749251_SNP [dm6]	T	A	2.373e^-4	0.722	UPSTREAM Klc & 1 other INTRON Klc
X	20904248	X_20904248_SNP [dm3] X_21033221_SNP [dm6]	G	A	2.375e^-4	0.722	INTERGENIC	transposable element FlyBase
3L	7544945	3L_7544945_SNP [dm3] 3L_7551845_SNP [dm6]	T	G	2.376e^-4	0.722	INTERGENIC
2R	10993824	2R_10993824_SNP [dm3] 2R_15106319_SNP [dm6]	T	C	2.377e^-4	0.722	INTERGENIC
3L	12751115	3L_12751115_SNP [dm3] 3L_12758015_SNP [dm6]	C	T	2.381e^-4	0.722	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14409962	2R_14409962_SNP [dm3] 2R_18522457_SNP [dm6]	C	T	2.384e^-4	0.722	INTRON CG43066	TF binding site mE1_TFBS_chinmo
2R	6451451	2R_6451451_SNP [dm3] 2R_10563946_SNP [dm6]	A	G	2.387e^-4	0.722	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	18461707	3R_18461707_SNP [dm3] 3R_22635985_SNP [dm6]	C	A	2.387e^-4	0.722	UTR_5_PRIME loco INTRON loco	TF binding site mE1_TFBS_cad
2R	16972415	2R_16972415_SNP [dm3] 2R_21084910_SNP [dm6]	T	G	2.389e^-4	0.722	INTRON Treh	TF binding site mE1_TFBS_cad
X	12941100	X_12941100_SNP [dm3] X_13047067_SNP [dm6]	A	G	2.395e^-4	0.722	INTRON rad
X	19019729	X_19019729_SNP [dm3] X_19125696_SNP [dm6]	G	A	2.395e^-4	0.722	INTRON tgy
3L	8214664	3L_8214664_SNP [dm3] 3L_8221564_SNP [dm6]	G	A	2.398e^-4	0.722	UPSTREAM CG13678 INTERGENIC
3R	20322069	3R_20322069_SNP [dm3] 3R_24496347_SNP [dm6]	T	C	2.404e^-4	0.722	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21254235	3L_21254235_SNP [dm3] 3L_21261135_SNP [dm6]	T	C	2.404e^-4	0.722	INTRON Eip78C
2R	4417148	2R_4417148_SNP [dm3] 2R_8529643_SNP [dm6]	G	A	2.412e^-4	0.722	INTRON mtt
2L	14677175	2L_14677175_SNP [dm3] 2L_14677175_SNP [dm6]	C	T	2.414e^-4	0.722	INTRON osp
2L	5475455	2L_5475455_SNP [dm3] 2L_5475455_SNP [dm6]	T	G	2.419e^-4	0.722	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5475456	2L_5475456_SNP [dm3] 2L_5475456_SNP [dm6]	G	C	2.419e^-4	0.722	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6584564	2R_6584564_SNP [dm3] 2R_10697059_SNP [dm6]	T	C	2.422e^-4	0.722	INTRON stan
3L	9189603	3L_9189603_SNP [dm3] 3L_9196503_SNP [dm6]	C	T	2.435e^-4	0.722	INTERGENIC
3R	26495377	3R_26495377_SNP [dm3] 3R_30669655_SNP [dm6]	A	T	2.438e^-4	0.722	INTERGENIC
3L	12742849	3L_12742849_SNP [dm3] 3L_12749749_SNP [dm6]	A	G	2.438e^-4	0.722	UTR_5_PRIME Klc UPSTREAM Klc & 1 other INTRON Klc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16319042	2R_16319042_SNP [dm3] 2R_20431537_SNP [dm6]	T	C	2.443e^-4	0.722	INTRON CG12484
3R	20465341	3R_20465341_DEL [dm3] 3R_24639619_DEL [dm6]	AT	A	2.445e^-4	0.722	DOWNSTREAM puf INTRON puf	TF binding site mE1_TFBS_chinmo
2L	9532049	2L_9532049_SNP [dm3] 2L_9532049_SNP [dm6]	T	A	2.452e^-4	0.722	INTRON Oatp30B
2R	2996916	2R_2996916_SNP [dm3] 2R_7109411_SNP [dm6]	C	T	2.453e^-4	0.722	INTRON esn
3R	16099420	3R_16099420_SNP [dm3] 3R_20273698_SNP [dm6]	A	G	2.454e^-4	0.722	INTRON cic
2L	5408350	2L_5408350_SNP [dm3] 2L_5408350_SNP [dm6]	G	A	2.456e^-4	0.722	INTRON H15	TF binding site mE1_TFBS_cad
3R	13023784	3R_13023784_SNP [dm3] 3R_17198062_SNP [dm6]	C	T	2.456e^-4	0.722	INTRON Mur89F
3R	10078726	3R_10078726_SNP [dm3] 3R_14253004_SNP [dm6]	T	C	2.458e^-4	0.722	INTRON Aats-met
X	17088565	X_17088565_SNP [dm3] X_17194532_SNP [dm6]	T	G	2.458e^-4	0.722	UTR_3_PRIME baz
3L	19311561	3L_19311561_SNP [dm3] 3L_19318461_SNP [dm6]	C	T	2.475e^-4	0.724	INTRON pip	TF binding site mE1_TFBS_cad
2L	14850114	2L_14850114_DEL [dm3] 2L_14850114_DEL [dm6]	TAT	T	2.475e^-4	0.724	UPSTREAM CG15279 INTRON CG15279
3R	20904158	3R_20904158_SNP [dm3] 3R_25078436_SNP [dm6]	A	C	2.482e^-4	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	20929799	X_20929799_SNP [dm3] X_21058772_SNP [dm6]	G	A	2.489e^-4	0.725	INTRON bves
X	20929832	X_20929832_SNP [dm3] X_21058805_SNP [dm6]	G	C	2.489e^-4	0.725	INTRON bves
3R	20375725	3R_20375725_INS [dm3] 3R_24550003_INS [dm6]	G	GG	2.493e^-4	0.725	INTRON Esyt2
2L	15854133	2L_15854133_SNP [dm3] 2L_15854133_SNP [dm6]	A	G	2.505e^-4	0.727	START_GAINED Tektin-A UTR_5_PRIME Tektin-A UPSTREAM Tektin-A DOWNSTREAM CG13243
3R	26438713	3R_26438713_SNP [dm3] 3R_30612991_SNP [dm6]	A	T	2.529e^-4	0.731	UPSTREAM CR45571 EXON CR45571
3R	20465326	3R_20465326_SNP [dm3] 3R_24639604_SNP [dm6]	A	G	2.530e^-4	0.731	DOWNSTREAM puf INTRON puf	TF binding site mE1_TFBS_chinmo
3R	25946474	3R_25946474_SNP [dm3] 3R_30120752_SNP [dm6]	C	T	2.540e^-4	0.731	SYNONYMOUS_CODING sima UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20929546	X_20929546_DEL [dm3] X_21058519_DEL [dm6]	GC	G	2.547e^-4	0.731	INTRON bves
2R	5587305	2R_5587305_SNP [dm3] 2R_9699800_SNP [dm6]	G	A	2.563e^-4	0.731	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	10238187	2L_10238187_SNP [dm3] 2L_10238187_SNP [dm6]	G	A	2.563e^-4	0.731	UTR_5_PRIME mthl15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12592861	2L_12592861_SNP [dm3] 2L_12592861_SNP [dm6]	A	G	2.564e^-4	0.731	INTRON nub
3L	9016070	3L_9016070_SNP [dm3] 3L_9022970_SNP [dm6]	G	A	2.564e^-4	0.731	INTERGENIC
3R	25437296	3R_25437296_SNP [dm3] 3R_29611574_SNP [dm6]	C	T	2.564e^-4	0.731	INTRON alph
2L	6414219	2L_6414219_SNP [dm3] 2L_6414219_SNP [dm6]	A	T	2.570e^-4	0.731	UTR_3_PRIME CG13982 DOWNSTREAM Tig
2L	6586717	2L_6586717_SNP [dm3] 2L_6586717_SNP [dm6]	T	C	2.573e^-4	0.731	UTR_5_PRIME CG11319
3R	7286950	3R_7286950_SNP [dm3] 3R_11461228_SNP [dm6]	A	T	2.573e^-4	0.731	UPSTREAM PGRP-LB INTRON CG17230
2R	11250885	2R_11250885_SNP [dm3] 2R_15363380_SNP [dm6]	C	T	2.578e^-4	0.731	INTRON unc-5
3L	2357337	3L_2357337_SNP [dm3] 3L_2357337_SNP [dm6]	C	T	2.582e^-4	0.731	INTERGENIC
3R	8452150	3R_8452150_SNP [dm3] 3R_12626428_SNP [dm6]	C	T	2.585e^-4	0.731	INTRON Vha55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	1276673	2L_1276673_SNP [dm3] 2L_1276673_SNP [dm6]	G	A	2.585e^-4	0.731	INTRON robo3
X	18022623	X_18022623_SNP [dm3] X_18128590_SNP [dm6]	G	A	2.586e^-4	0.731	DOWNSTREAM mir-210 & 1 other INTERGENIC
2L	5180036	2L_5180036_SNP [dm3] 2L_5180036_SNP [dm6]	G	A	2.588e^-4	0.731	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	20465358	3R_20465358_SNP [dm3] 3R_24639636_SNP [dm6]	A	T	2.596e^-4	0.731	DOWNSTREAM puf INTRON puf	TF binding site mE1_TFBS_chinmo
X	19440278	X_19440278_SNP [dm3] X_19546245_SNP [dm6]	C	A	2.606e^-4	0.731	INTRON CG32532	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	6584542	2R_6584542_SNP [dm3] 2R_10697037_SNP [dm6]	A	C	2.611e^-4	0.731	INTRON stan
3R	19493931	3R_19493931_SNP [dm3] 3R_23668209_SNP [dm6]	A	G	2.616e^-4	0.731	INTRON CG31145
3R	16716511	3R_16716511_INS [dm3] 3R_20890789_INS [dm6]	A	ACAGTTATA	2.617e^-4	0.731	UPSTREAM tRNA:CR31334 & 1 other DOWNSTREAM tRNA:CR31480 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	14439653	2R_14439653_SNP [dm3] 2R_18552148_SNP [dm6]	C	T	2.620e^-4	0.731	INTERGENIC
3L	5712222	3L_5712222_SNP [dm3] 3L_5719122_SNP [dm6]	A	C	2.622e^-4	0.731	INTRON sif
X	6137320	X_6137320_SNP [dm3] X_6243287_SNP [dm6]	T	G	2.626e^-4	0.731	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20062784	3L_20062784_SNP [dm3] 3L_20069684_SNP [dm6]	T	C	2.634e^-4	0.731	INTRON sNPF-R	TF binding site BDTNP1_TFBS_twi
3R	25901938	3R_25901938_DEL [dm3] 3R_30076216_DEL [dm6]	TTCCCACAGTA...	T	2.634e^-4	0.731	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	12349129	X_12349129_SNP [dm3] X_12455096_SNP [dm6]	A	G	2.634e^-4	0.731	SYNONYMOUS_CODING CG15927 UPSTREAM CR45615
X	13069335	X_13069335_SNP [dm3] X_13175302_SNP [dm6]	C	T	2.635e^-4	0.731	INTRON CG34411	TF binding site BDTNP1_TFBS_twi
3R	24785106	3R_24785106_SNP [dm3] 3R_28959384_SNP [dm6]	C	T	2.639e^-4	0.731	INTRON CG14521
3R	22104564	3R_22104564_INS [dm3] 3R_26278842_INS [dm6]	G	TC	2.645e^-4	0.732	INTERGENIC
2L	849270	2L_849270_SNP [dm3] 2L_849270_SNP [dm6]	A	G	2.651e^-4	0.732	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2L	9545241	2L_9545241_SNP [dm3] 2L_9545241_SNP [dm6]	A	G	2.659e^-4	0.734	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
2R	14648538	2R_14648538_SNP [dm3] 2R_18761033_SNP [dm6]	T	C	2.664e^-4	0.734	UTR_5_PRIME Jabba UPSTREAM Jabba & 1 other
3L	11296149	3L_11296149_SNP [dm3] 3L_11303049_SNP [dm6]	C	G	2.670e^-4	0.734	INTERGENIC
3L	11296161	3L_11296161_SNP [dm3] 3L_11303061_SNP [dm6]	G	T	2.679e^-4	0.735	INTERGENIC
3L	2712613	3L_2712613_SNP [dm3] 3L_2712613_SNP [dm6]	A	G	2.684e^-4	0.735	UPSTREAM Fife INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14845174	2L_14845174_SNP [dm3] 2L_14845174_SNP [dm6]	C	T	2.688e^-4	0.735	SYNONYMOUS_CODING CG15279
3L	15650062	3L_15650062_SNP [dm3] 3L_15656962_SNP [dm6]	C	A	2.693e^-4	0.735	UPSTREAM Eig71Ee & 1 other INTRON Eig71Ef
2L	1481914	2L_1481914_SNP [dm3] 2L_1481914_SNP [dm6]	C	T	2.693e^-4	0.735	INTERGENIC
3R	23030895	3R_23030895_DEL [dm3] 3R_27205173_DEL [dm6]	TGTAATTACTT...	T	2.701e^-4	0.735	INTERGENIC	regulatory region REDfly_CRMs
3L	9438794	3L_9438794_SNP [dm3] 3L_9445694_SNP [dm6]	T	C	2.702e^-4	0.735	INTRON CG33926	TF binding site mE1_TFBS_cad
3R	12289151	3R_12289151_SNP [dm3] 3R_16463429_SNP [dm6]	C	G	2.708e^-4	0.735	SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17087639	X_17087639_SNP [dm3] X_17193606_SNP [dm6]	C	A	2.711e^-4	0.735	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14507834	2R_14507834_SNP [dm3] 2R_18620329_SNP [dm6]	T	A	2.713e^-4	0.735	DOWNSTREAM Atg7 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	10034869	2L_10034869_SNP [dm3] 2L_10034869_SNP [dm6]	T	A	2.728e^-4	0.737	INTRON obst-B
2L	13237507	2L_13237507_SNP [dm3] 2L_13237507_SNP [dm6]	T	G	2.728e^-4	0.737	INTRON CG5867
2R	9740764	2R_9740764_SNP [dm3] 2R_13853259_SNP [dm6]	C	G	2.744e^-4	0.741	SYNONYMOUS_CODING CG6543 DOWNSTREAM CG30485	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_inv
2L	6779679	2L_6779679_INS [dm3] 2L_6779679_INS [dm6]	C	TCG	2.750e^-4	0.741	INTRON nrv1
2R	6451389	2R_6451389_SNP [dm3] 2R_10563884_SNP [dm6]	A	G	2.754e^-4	0.741	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	3269823	3L_3269823_SNP [dm3] 3L_3269823_SNP [dm6]	C	G	2.762e^-4	0.741	DOWNSTREAM CG34265 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19442473	2R_19442473_SNP [dm3] 2R_23554950_SNP [dm6]	A	G	2.764e^-4	0.741	UPSTREAM pita DOWNSTREAM Rrp4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16326263	2R_16326263_SNP [dm3] 2R_20438758_SNP [dm6]	G	A	2.774e^-4	0.741	INTRON CG12484
3L	19330065	3L_19330065_SNP [dm3] 3L_19336965_SNP [dm6]	G	T	2.780e^-4	0.741	INTRON pip
3L	14054477	3L_14054477_SNP [dm3] 3L_14061377_SNP [dm6]	G	A	2.782e^-4	0.741	INTRON CG32138
X	12421892	X_12421892_SNP [dm3] X_12527859_SNP [dm6]	A	C	2.786e^-4	0.741	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
3L	3776823	3L_3776823_DEL [dm3] 3L_3776823_DEL [dm6]	CACACAAGAAC...	C	2.788e^-4	0.741	INTRON CG32264
3L	12710882	3L_12710882_SNP [dm3] 3L_12717782_SNP [dm6]	T	C	2.790e^-4	0.741	INTERGENIC
X	8891504	X_8891504_SNP [dm3] X_8997471_SNP [dm6]	A	G	2.805e^-4	0.741	INTRON rdgA & 1 other
3L	5633323	3L_5633323_SNP [dm3] 3L_5640223_SNP [dm6]	G	A	2.808e^-4	0.741	INTRON Blimp-1
3L	15687991	3L_15687991_SNP [dm3] 3L_15694891_SNP [dm6]	C	G	2.809e^-4	0.741	INTERGENIC
3R	3216077	3R_3216077_SNP [dm3] 3R_7390355_SNP [dm6]	C	T	2.810e^-4	0.741	INTERGENIC
2L	526385	2L_526385_SNP [dm3] 2L_526385_SNP [dm6]	G	A	2.810e^-4	0.741	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
3L	10491293	3L_10491293_SNP [dm3] 3L_10498193_SNP [dm6]	C	A	2.811e^-4	0.741	INTRON A2bp1
X	8891462	X_8891462_SNP [dm3] X_8997429_SNP [dm6]	C	G	2.814e^-4	0.741	INTRON rdgA & 1 other
2L	5733021	2L_5733021_SNP [dm3] 2L_5733021_SNP [dm6]	A	C	2.816e^-4	0.741	DOWNSTREAM CG11147 INTRON CG11030
2R	9999894	2R_9999894_SNP [dm3] 2R_14112389_SNP [dm6]	C	A	2.830e^-4	0.743	INTRON Prosap
2L	6460708	2L_6460708_SNP [dm3] 2L_6460708_SNP [dm6]	G	A	2.835e^-4	0.743	SYNONYMOUS_CODING CG16947	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3895220	2R_3895220_SNP [dm3] 2R_8007715_SNP [dm6]	G	A	2.838e^-4	0.743	INTRON Odc2	TF binding site mE1_TFBS_cad
3R	22666122	3R_22666122_SNP [dm3] 3R_26840400_SNP [dm6]	G	C	2.850e^-4	0.744	SYNONYMOUS_CODING Tl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1255977	3L_1255977_SNP [dm3] 3L_1255977_SNP [dm6]	A	C	2.850e^-4	0.744	UTR_3_PRIME CG9130 & 1 other UPSTREAM CG9134
3R	3214811	3R_3214811_SNP [dm3] 3R_7389089_SNP [dm6]	A	C	2.859e^-4	0.745	DOWNSTREAM CR45560 INTERGENIC
2L	6235392	2L_6235392_SNP [dm3] 2L_6235392_SNP [dm6]	C	G	2.861e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	12360233	2R_12360233_DEL [dm3] 2R_16472728_DEL [dm6]	GTG	A	2.872e^-4	0.747	INTERGENIC
2R	14222237	2R_14222237_SNP [dm3] 2R_18334732_SNP [dm6]	G	A	2.884e^-4	0.748	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7998261	2R_7998261_SNP [dm3] 2R_12110756_SNP [dm6]	G	A	2.884e^-4	0.748	INTRON jeb
3L	16982115	3L_16982115_SNP [dm3] 3L_16989015_SNP [dm6]	A	T	2.888e^-4	0.748	INTRON Exn
3R	8888316	3R_8888316_SNP [dm3] 3R_13062594_SNP [dm6]	A	G	2.899e^-4	0.749	UTR_5_PRIME sim INTRON sim
3R	23281544	3R_23281544_SNP [dm3] 3R_27455822_SNP [dm6]	C	A	2.901e^-4	0.749	INTERGENIC
2L	14224672	2L_14224672_SNP [dm3] 2L_14224672_SNP [dm6]	T	C	2.905e^-4	0.75	INTRON Dyrk2
3R	11008654	3R_11008654_SNP [dm3] 3R_15182932_SNP [dm6]	G	T	2.910e^-4	0.75	INTRON Gyc88E
2L	1207933	2L_1207933_SNP [dm3] 2L_1207933_SNP [dm6]	C	T	2.917e^-4	0.751	INTERGENIC
2L	19110910	2L_19110910_SNP [dm3] 2L_19110910_SNP [dm6]	A	T	2.928e^-4	0.752	UPSTREAM amd INTRON amd	TF binding site mE1_TFBS_HSA
3L	7777742	3L_7777742_SNP [dm3] 3L_7784642_SNP [dm6]	G	A	2.931e^-4	0.752	INTRON CG32369
2L	20934707	2L_20934707_SNP [dm3] 2L_20934707_SNP [dm6]	T	A	2.938e^-4	0.753	UPSTREAM CG9270 INTERGENIC
X	4807838	X_4807838_SNP [dm3] X_4913805_SNP [dm6]	A	T	2.961e^-4	0.754	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16864741	3L_16864741_SNP [dm3] 3L_16871641_SNP [dm6]	G	A	2.967e^-4	0.754	INTRON Lmpt
2L	5403184	2L_5403184_SNP [dm3] 2L_5403184_SNP [dm6]	C	G	2.968e^-4	0.754	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9538788	2L_9538788_SNP [dm3] 2L_9538788_SNP [dm6]	G	A	2.969e^-4	0.754	UTR_3_PRIME Oatp30B
2R	14322557	2R_14322557_SNP [dm3] 2R_18435052_SNP [dm6]	T	C	2.986e^-4	0.754	INTRON CG30118
3R	17279077	3R_17279077_SNP [dm3] 3R_21453355_SNP [dm6]	T	A	2.990e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	11808493	2R_11808493_SNP [dm3] 2R_15920988_SNP [dm6]	T	C	2.992e^-4	0.754	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10931867	X_10931867_SNP [dm3] X_11037834_SNP [dm6]	T	C	3.000e^-4	0.754	UPSTREAM CG42339 INTRON CG42339
3R	24908372	3R_24908372_SNP [dm3] 3R_29082650_SNP [dm6]	C	T	3.001e^-4	0.754	INTRON CG11873	TF binding site mE1_TFBS_inv
3R	16409409	3R_16409409_SNP [dm3] 3R_20583687_SNP [dm6]	T	C	3.007e^-4	0.754	SYNONYMOUS_CODING CG16953
3R	16091148	3R_16091148_SNP [dm3] 3R_20265426_SNP [dm6]	T	G	3.008e^-4	0.754	INTRON cic
X	4677693	X_4677693_INS [dm3] X_4783660_INS [dm6]	A	AAA	3.009e^-4	0.754	UPSTREAM CG15471 & 1 other INTERGENIC
X	17677047	X_17677047_SNP [dm3] X_17783014_SNP [dm6]	T	A	3.010e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6461131	3R_6461131_SNP [dm3] 3R_10635409_SNP [dm6]	A	G	3.011e^-4	0.754	INTRON hth
X	18763324	X_18763324_DEL [dm3] X_18869291_DEL [dm6]	TGT	T	3.015e^-4	0.754	INTRON CG34401	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25394283	3R_25394283_SNP [dm3] 3R_29568561_SNP [dm6]	A	G	3.017e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3266362	3L_3266362_SNP [dm3] 3L_3266362_SNP [dm6]	G	A	3.019e^-4	0.754	INTRON ckd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9343428	2R_9343428_SNP [dm3] 2R_13455923_SNP [dm6]	A	G	3.019e^-4	0.754	SPLICE_SITE_REGION arr INTRON arr
3R	27086359	3R_27086359_SNP [dm3] 3R_31260637_SNP [dm6]	T	C	3.024e^-4	0.754	DOWNSTREAM CG3669 INTRON CG18672
2L	20934714	2L_20934714_SNP [dm3] 2L_20934714_SNP [dm6]	T	G	3.025e^-4	0.754	UPSTREAM CG9270 INTERGENIC
3L	2629765	3L_2629765_DEL [dm3] 3L_2629765_DEL [dm6]	TT	T	3.034e^-4	0.754	UPSTREAM Pxn DOWNSTREAM CR45660 INTRON Pxn
3R	7118387	3R_7118387_SNP [dm3] 3R_11292665_SNP [dm6]	T	C	3.035e^-4	0.754	INTRON CR31386
2L	12227922	2L_12227922_SNP [dm3] 2L_12227922_SNP [dm6]	G	A	3.051e^-4	0.754	INTRON aret
2L	6414223	2L_6414223_DEL [dm3] 2L_6414223_DEL [dm6]	TG	A	3.052e^-4	0.754	UTR_3_PRIME CG13982 DOWNSTREAM Tig
2L	5792819	2L_5792819_SNP [dm3] 2L_5792819_SNP [dm6]	C	T	3.054e^-4	0.754	INTRON CG9171
3R	18486751	3R_18486751_SNP [dm3] 3R_22661029_SNP [dm6]	G	A	3.058e^-4	0.754	INTRON CG45058
3R	18461678	3R_18461678_SNP [dm3] 3R_22635956_SNP [dm6]	C	T	3.061e^-4	0.754	UTR_5_PRIME loco INTRON loco	TF binding site mE1_TFBS_cad
2L	530022	2L_530022_SNP [dm3] 2L_530022_SNP [dm6]	A	G	3.074e^-4	0.754	INTRON ush	regulatory region REDfly_CRMs
3R	10123159	3R_10123159_SNP [dm3] 3R_14297437_SNP [dm6]	T	C	3.077e^-4	0.754	UPSTREAM CG12207 INTRON CG12207	TF binding site mE1_TFBS_cad
3R	22665769	3R_22665769_SNP [dm3] 3R_26840047_SNP [dm6]	A	T	3.082e^-4	0.754	NON_SYNONYMOUS_CODING Tl	TF binding site mE1_TFBS_sens
2L	20934708	2L_20934708_SNP [dm3] 2L_20934708_SNP [dm6]	T	A	3.082e^-4	0.754	UPSTREAM CG9270 INTERGENIC
3R	25955065	3R_25955065_SNP [dm3] 3R_30129343_SNP [dm6]	G	C	3.085e^-4	0.754	UTR_3_PRIME CG31029 UPSTREAM Ppi1	TF binding site mE1_TFBS_cad
2R	9247738	2R_9247738_SNP [dm3] 2R_13360233_SNP [dm6]	C	A	3.085e^-4	0.754	INTERGENIC
X	17088567	X_17088567_SNP [dm3] X_17194534_SNP [dm6]	T	G	3.087e^-4	0.754	UTR_3_PRIME baz
3R	26438772	3R_26438772_SNP [dm3] 3R_30613050_SNP [dm6]	G	A	3.090e^-4	0.754	EXON CR45571
2R	7423409	2R_7423409_SNP [dm3] 2R_11535904_SNP [dm6]	A	G	3.090e^-4	0.754	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16529068	3L_16529068_SNP [dm3] 3L_16535968_SNP [dm6]	G	C	3.094e^-4	0.754	INTRON CG43373	TF binding site BDTNP1_TFBS_twi
2L	15508451	2L_15508451_SNP [dm3] 2L_15508451_SNP [dm6]	C	T	3.098e^-4	0.754	INTERGENIC
2L	11969977	2L_11969977_SNP [dm3] 2L_11969977_SNP [dm6]	G	A	3.104e^-4	0.754	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6259627	3L_6259627_SNP [dm3] 3L_6266527_SNP [dm6]	T	A	3.104e^-4	0.754	INTERGENIC
2R	12343737	2R_12343737_SNP [dm3] 2R_16456232_SNP [dm6]	A	T	3.108e^-4	0.754	INTERGENIC
3L	12128368	3L_12128368_SNP [dm3] 3L_12135268_SNP [dm6]	C	T	3.122e^-4	0.756	NON_SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14711551	2R_14711551_SNP [dm3] 2R_18824046_SNP [dm6]	C	T	3.130e^-4	0.757	SYNONYMOUS_CODING CG15097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17299451	3R_17299451_SNP [dm3] 3R_21473729_SNP [dm6]	G	T	3.133e^-4	0.757	INTERGENIC
X	18093651	X_18093651_DEL [dm3] X_18199618_DEL [dm6]	CTC	C	3.137e^-4	0.757	INTRON Frq2
2L	9982642	2L_9982642_SNP [dm3] 2L_9982642_SNP [dm6]	C	G	3.148e^-4	0.758	INTERGENIC	regulatory region REDfly_CRMs
2R	1076496	2R_1076496_SNP [dm3] 2R_5188991_SNP [dm6]	G	T	3.153e^-4	0.758	INTRON Nipped-A
3L	7781133	3L_7781133_DEL [dm3] 3L_7788033_DEL [dm6]	GAGTG	G	3.154e^-4	0.758	INTRON CG32369
3R	6129639	3R_6129639_SNP [dm3] 3R_10303917_SNP [dm6]	G	C	3.162e^-4	0.758	SYNONYMOUS_CODING CG43143	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6137319	X_6137319_SNP [dm3] X_6243286_SNP [dm6]	T	G	3.173e^-4	0.758	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14222021	2R_14222021_SNP [dm3] 2R_18334516_SNP [dm6]	T	C	3.184e^-4	0.758	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	503811	2R_503811_SNP [dm3] 2R_4616306_SNP [dm6]	C	G	3.187e^-4	0.758	INTERGENIC	transposable element FlyBase
3L	1993778	3L_1993778_DEL [dm3] 3L_1993778_DEL [dm6]	CCC	C	3.194e^-4	0.758	INTERGENIC
3R	10727492	3R_10727492_SNP [dm3] 3R_14901770_SNP [dm6]	A	T	3.196e^-4	0.758	UPSTREAM RpS5b DOWNSTREAM VhaPPA1-1 INTERGENIC
3L	2278284	3L_2278284_SNP [dm3] 3L_2278284_SNP [dm6]	A	C	3.198e^-4	0.758	DOWNSTREAM yellow-g2 INTERGENIC	TF binding site mE1_TFBS_inv
X	8129879	X_8129879_SNP [dm3] X_8235846_SNP [dm6]	C	G	3.206e^-4	0.758	INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19874837	2R_19874837_SNP [dm3] 2R_23987314_SNP [dm6]	G	A	3.216e^-4	0.758	DOWNSTREAM CG30178 INTRON Phm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	16010028	2R_16010028_SNP [dm3] 2R_20122523_SNP [dm6]	C	T	3.217e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5536781	2L_5536781_INS [dm3] 2L_5536781_INS [dm6]	A	AA	3.222e^-4	0.758	UPSTREAM tomb DOWNSTREAM CG14015 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	884773	2L_884773_SNP [dm3] 2L_884773_SNP [dm6]	A	G	3.233e^-4	0.758	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	14219105	2R_14219105_SNP [dm3] 2R_18331600_SNP [dm6]	A	G	3.234e^-4	0.758	INTRON sbb
2R	8339474	2R_8339474_SNP [dm3] 2R_12451969_SNP [dm6]	C	T	3.239e^-4	0.758	DOWNSTREAM Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12488483	2R_12488483_SNP [dm3] 2R_16600978_SNP [dm6]	A	C	3.249e^-4	0.758	DOWNSTREAM CG5089 INTRON CG8303
2R	12345628	2R_12345628_SNP [dm3] 2R_16458123_SNP [dm6]	T	A	3.252e^-4	0.758	INTERGENIC
X	20929512	X_20929512_SNP [dm3] X_21058485_SNP [dm6]	T	C	3.252e^-4	0.758	INTRON bves
2L	12614617	2L_12614617_SNP [dm3] 2L_12614617_SNP [dm6]	A	G	3.254e^-4	0.758	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	6779649	2L_6779649_SNP [dm3] 2L_6779649_SNP [dm6]	C	A	3.262e^-4	0.758	SPLICE_SITE_REGION nrv1 SYNONYMOUS_CODING nrv1
X	19998577	X_19998577_SNP [dm3] X_20104544_SNP [dm6]	T	A	3.268e^-4	0.758	INTERGENIC
3R	24908321	3R_24908321_SNP [dm3] 3R_29082599_SNP [dm6]	G	A	3.271e^-4	0.758	INTRON CG11873	TF binding site mE1_TFBS_inv
2R	14445691	2R_14445691_SNP [dm3] 2R_18558186_SNP [dm6]	G	A	3.271e^-4	0.758	SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18656855	2R_18656855_INS [dm3] 2R_22769350_INS [dm6]	G	GCACATTG	3.272e^-4	0.758	INTRON CG42260
3R	16426971	3R_16426971_SNP [dm3] 3R_20601249_SNP [dm6]	C	T	3.274e^-4	0.758	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14088703	2L_14088703_SNP [dm3] 2L_14088703_SNP [dm6]	T	A	3.277e^-4	0.758	INTRON nAChRalpha5
2L	5617034	2L_5617034_DEL [dm3] 2L_5617034_DEL [dm6]	CT	C	3.278e^-4	0.758	INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17422940	2L_17422940_SNP [dm3] 2L_17422940_SNP [dm6]	G	A	3.281e^-4	0.758	INTRON Dif
2R	10000060	2R_10000060_SNP [dm3] 2R_14112555_SNP [dm6]	G	A	3.283e^-4	0.758	INTRON Prosap
3L	8127455	3L_8127455_SNP [dm3] 3L_8134355_SNP [dm6]	T	A	3.286e^-4	0.758	SYNONYMOUS_CODING CG7504	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10410155	X_10410155_SNP [dm3] X_10516122_SNP [dm6]	C	T	3.287e^-4	0.758	INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	6306713	X_6306713_SNP [dm3] X_6412680_SNP [dm6]	C	A	3.294e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	3896154	2R_3896154_SNP [dm3] 2R_8008649_SNP [dm6]	T	G	3.294e^-4	0.758	DOWNSTREAM CG14762 INTRON Odc2	TF binding site mE1_TFBS_cad
3R	3209156	3R_3209156_DEL [dm3] 3R_7383434_DEL [dm6]	AACT	A	3.298e^-4	0.758	INTERGENIC
2R	19264540	2R_19264540_SNP [dm3] 2R_23377017_SNP [dm6]	T	A	3.300e^-4	0.758	UTR_5_PRIME Golgin245 DOWNSTREAM CG13551	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18656819	2R_18656819_SNP [dm3] 2R_22769314_SNP [dm6]	T	A	3.310e^-4	0.758	INTRON CG42260
2L	13366498	2L_13366498_SNP [dm3] 2L_13366498_SNP [dm6]	C	T	3.312e^-4	0.758	UTR_5_PRIME CG6523 UPSTREAM Nnp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14322730	2R_14322730_SNP [dm3] 2R_18435225_SNP [dm6]	G	T	3.317e^-4	0.758	INTRON CG30118	TF binding site BDTNP1_TFBS_twi
3R	26405022	3R_26405022_SNP [dm3] 3R_30579300_SNP [dm6]	G	A	3.317e^-4	0.758	UPSTREAM CG9702 DOWNSTREAM tmod INTERGENIC
3R	25823914	3R_25823914_SNP [dm3] 3R_29998192_SNP [dm6]	C	T	3.318e^-4	0.758	UTR_5_PRIME CG11504 UPSTREAM CG15525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19722530	X_19722530_INS [dm3] X_19828497_INS [dm6]	A	ATATATCTACATATATATAT...	3.332e^-4	0.758	INTERGENIC
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	3.336e^-4	0.758	INTRON salm
2R	20365015	2R_20365015_SNP [dm3] 2R_24477492_SNP [dm6]	A	G	3.342e^-4	0.758	INTRON CG13579	TF binding site mE1_TFBS_chinmo
2L	9982713	2L_9982713_SNP [dm3] 2L_9982713_SNP [dm6]	A	C	3.346e^-4	0.758	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2R	16787456	2R_16787456_DEL [dm3] 2R_20899951_DEL [dm6]	CGTAG	C	3.347e^-4	0.758	INTRON otp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10570521	3R_10570521_SNP [dm3] 3R_14744799_SNP [dm6]	G	A	3.347e^-4	0.758	INTRON jvl
3R	10600494	3R_10600494_SNP [dm3] 3R_14774772_SNP [dm6]	T	C	3.348e^-4	0.758	INTRON jvl
2R	5587300	2R_5587300_SNP [dm3] 2R_9699795_SNP [dm6]	G	T	3.351e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	1931018	3L_1931018_SNP [dm3] 3L_1931018_SNP [dm6]	G	A	3.360e^-4	0.758	INTRON Dbx
3R	10231023	3R_10231023_SNP [dm3] 3R_14405301_SNP [dm6]	T	C	3.360e^-4	0.758	UTR_5_PRIME cv-c INTRON cv-c	TF binding site mE1_TFBS_inv
2L	19268701	2L_19268701_SNP [dm3] 2L_19268701_SNP [dm6]	T	A	3.361e^-4	0.758	DOWNSTREAM CR44190 INTERGENIC
3R	10070257	3R_10070257_SNP [dm3] 3R_14244535_SNP [dm6]	G	A	3.373e^-4	0.758	NON_SYNONYMOUS_CODING CG43291 DOWNSTREAM CG9616
X	17607011	X_17607011_SNP [dm3] X_17712978_SNP [dm6]	G	T	3.374e^-4	0.758	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	7050218	2R_7050218_SNP [dm3] 2R_11162713_SNP [dm6]	C	T	3.376e^-4	0.758	INTRON shn & 1 other
3R	25812310	3R_25812310_SNP [dm3] 3R_29986588_SNP [dm6]	C	T	3.382e^-4	0.758	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	4200878	2L_4200878_SNP [dm3] 2L_4200878_SNP [dm6]	C	T	3.385e^-4	0.758	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	6773425	X_6773425_SNP [dm3] X_6879392_SNP [dm6]	G	C	3.393e^-4	0.758	SYNONYMOUS_CODING CG43736 UTR_3_PRIME CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13023838	3R_13023838_SNP [dm3] 3R_17198116_SNP [dm6]	C	G	3.394e^-4	0.758	INTRON Mur89F
2L	2430294	2L_2430294_DEL [dm3] 2L_2430294_DEL [dm6]	AA	A	3.397e^-4	0.758	INTRON dpp
2R	14220575	2R_14220575_SNP [dm3] 2R_18333070_SNP [dm6]	G	A	3.398e^-4	0.758	INTRON sbb
2L	526398	2L_526398_INS [dm3] 2L_526398_INS [dm6]	A	ACAAGGGATCTCTA...	3.402e^-4	0.758	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
3L	10993028	3L_10993028_SNP [dm3] 3L_10999928_SNP [dm6]	C	G	3.405e^-4	0.758	INTRON klu	TF binding site mE1_TFBS_chinmo
2R	21008864	2R_21008864_DEL [dm3] 2R_25121341_DEL [dm6]	CA	C	3.406e^-4	0.758	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	3929801	3L_3929801_SNP [dm3] 3L_3929801_SNP [dm6]	T	C	3.410e^-4	0.758	UPSTREAM Eip63F-1 INTRON Eip63F-1
2L	12760060	2L_12760060_SNP [dm3] 2L_12760060_SNP [dm6]	T	A	3.419e^-4	0.758	DOWNSTREAM CG15483 INTERGENIC
2R	16934511	2R_16934511_INS [dm3] 2R_21047006_INS [dm6]	C	CA	3.423e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2684236	2L_2684236_SNP [dm3] 2L_2684236_SNP [dm6]	C	A	3.425e^-4	0.758	INTRON CG31690
3L	18205479	3L_18205479_SNP [dm3] 3L_18212379_SNP [dm6]	T	C	3.431e^-4	0.758	INTERGENIC
2L	11929765	2L_11929765_SNP [dm3] 2L_11929765_SNP [dm6]	A	C	3.440e^-4	0.758	INTERGENIC
3R	19777952	3R_19777952_SNP [dm3] 3R_23952230_SNP [dm6]	T	G	3.442e^-4	0.758	UTR_3_PRIME Aats-glupro	TF binding site mE1_TFBS_cad
3L	6257495	3L_6257495_SNP [dm3] 3L_6264395_SNP [dm6]	G	A	3.443e^-4	0.758	UPSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12751574	3L_12751574_SNP [dm3] 3L_12758474_SNP [dm6]	A	C	3.457e^-4	0.758	INTRON CG32113	TF binding site mE1_TFBS_inv
3R	8138043	3R_8138043_SNP [dm3] 3R_12312321_SNP [dm6]	C	T	3.458e^-4	0.758	SYNONYMOUS_CODING CG4066	TF binding site mE1_TFBS_sens
3L	7687383	3L_7687383_SNP [dm3] 3L_7694283_SNP [dm6]	G	T	3.458e^-4	0.758	INTRON CG32373 & 2 others
2L	7749039	2L_7749039_SNP [dm3] 2L_7749039_SNP [dm6]	A	T	3.466e^-4	0.758	INTERGENIC
3R	20502841	3R_20502841_SNP [dm3] 3R_24677119_SNP [dm6]	C	G	3.467e^-4	0.758	INTRON slo
3L	12751016	3L_12751016_SNP [dm3] 3L_12757916_SNP [dm6]	G	T	3.468e^-4	0.758	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_inv
3L	1219346	3L_1219346_SNP [dm3] 3L_1219346_SNP [dm6]	A	T	3.469e^-4	0.758	UPSTREAM LysP INTRON mwh
2R	19246061	2R_19246061_SNP [dm3] 2R_23358538_SNP [dm6]	A	G	3.472e^-4	0.758	UPSTREAM CG3500 & 2 others DOWNSTREAM CG9875 EXON CR44168
2L	9982702	2L_9982702_SNP [dm3] 2L_9982702_SNP [dm6]	C	A	3.476e^-4	0.758	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3L	7589829	3L_7589829_SNP [dm3] 3L_7596729_SNP [dm6]	T	C	3.485e^-4	0.758	UPSTREAM CG33275 INTRON CG33275
3R	25394303	3R_25394303_DEL [dm3] 3R_29568581_DEL [dm6]	GGAAA	T	3.487e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11182285	2L_11182285_SNP [dm3] 2L_11182285_SNP [dm6]	A	T	3.492e^-4	0.758	INTRON Ca-beta
3R	26405794	3R_26405794_SNP [dm3] 3R_30580072_SNP [dm6]	C	G	3.498e^-4	0.758	INTRON CG9702	TF binding site mE1_TFBS_HSA
2L	19382044	2L_19382044_SNP [dm3] 2L_19382044_SNP [dm6]	A	G	3.500e^-4	0.758	NON_SYNONYMOUS_CODING CG17350	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18932280	2R_18932280_SNP [dm3] 2R_23044757_SNP [dm6]	T	G	3.501e^-4	0.758	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	16105409	3R_16105409_SNP [dm3] 3R_20279687_SNP [dm6]	G	T	3.505e^-4	0.758	INTRON cic
2R	14894029	2R_14894029_SNP [dm3] 2R_19006524_SNP [dm6]	T	C	3.532e^-4	0.758	SYNONYMOUS_CODING tn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21840045	2L_21840045_SNP [dm3] 2L_21840045_SNP [dm6]	C	A	3.538e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_sens
3L	19330068	3L_19330068_SNP [dm3] 3L_19336968_SNP [dm6]	T	C	3.545e^-4	0.758	INTRON pip
3L	19314785	3L_19314785_SNP [dm3] 3L_19321685_SNP [dm6]	G	T	3.547e^-4	0.758	INTRON pip
X	9028525	X_9028525_SNP [dm3] X_9134492_SNP [dm6]	T	A	3.553e^-4	0.758	UTR_5_PRIME fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1207935	2L_1207935_INS [dm3] 2L_1207935_INS [dm6]	A	AG	3.556e^-4	0.758	INTERGENIC
3R	2795140	3R_2795140_SNP [dm3] 3R_6969418_SNP [dm6]	T	C	3.558e^-4	0.758	INTRON Antp	TF binding site mE1_TFBS_inv
3R	27028653	3R_27028653_SNP [dm3] 3R_31202931_SNP [dm6]	G	T	3.563e^-4	0.758	INTRON CG1544
3L	11486235	3L_11486235_SNP [dm3] 3L_11493135_SNP [dm6]	A	G	3.571e^-4	0.758	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1256303	3L_1256303_SNP [dm3] 3L_1256303_SNP [dm6]	T	C	3.575e^-4	0.758	UPSTREAM CG9134 DOWNSTREAM CG9130 & 1 other INTERGENIC
2L	9982743	2L_9982743_SNP [dm3] 2L_9982743_SNP [dm6]	C	G	3.576e^-4	0.758	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	14677089	2L_14677089_INS [dm3] 2L_14677089_INS [dm6]	A	AT	3.583e^-4	0.758	INTRON osp
2L	12458074	2L_12458074_SNP [dm3] 2L_12458074_SNP [dm6]	C	T	3.595e^-4	0.758	SYNONYMOUS_CODING bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17915865	2L_17915865_DEL [dm3] 2L_17915865_DEL [dm6]	AG	A	3.597e^-4	0.758	UPSTREAM CG43271 INTERGENIC
2L	10034884	2L_10034884_SNP [dm3] 2L_10034884_SNP [dm6]	G	T	3.597e^-4	0.758	INTRON obst-B
X	18173928	X_18173928_SNP [dm3] X_18279895_SNP [dm6]	G	T	3.598e^-4	0.758	INTRON upd3	TF binding site mE1_TFBS_chinmo
X	11072030	X_11072030_SNP [dm3] X_11177997_SNP [dm6]	G	A	3.599e^-4	0.758	INTERGENIC
3L	8694844	3L_8694844_SNP [dm3] 3L_8701744_SNP [dm6]	G	T	3.600e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9545056	2L_9545056_SNP [dm3] 2L_9545056_SNP [dm6]	A	T	3.602e^-4	0.758	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
2L	6777040	2L_6777040_SNP [dm3] 2L_6777040_SNP [dm6]	G	C	3.606e^-4	0.758	SYNONYMOUS_CODING CG17378	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12747666	3L_12747666_SNP [dm3] 3L_12754566_SNP [dm6]	T	A	3.611e^-4	0.758	SYNONYMOUS_CODING CG10973 UPSTREAM CG32113	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6989738	2L_6989738_SNP [dm3] 2L_6989738_SNP [dm6]	C	T	3.622e^-4	0.758	INTRON uif
2L	14280508	2L_14280508_SNP [dm3] 2L_14280508_SNP [dm6]	A	G	3.627e^-4	0.758	INTRON wb	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	9540724	2L_9540724_SNP [dm3] 2L_9540724_SNP [dm6]	A	T	3.628e^-4	0.758	DOWNSTREAM Oatp30B INTRON CG17855	TF binding site mE1_TFBS_bab1
X	2871658	X_2871658_SNP [dm3] X_2977625_SNP [dm6]	T	C	3.628e^-4	0.758	INTRON kirre
3L	9438793	3L_9438793_SNP [dm3] 3L_9445693_SNP [dm6]	T	C	3.629e^-4	0.758	INTRON CG33926	TF binding site mE1_TFBS_cad
3R	23031305	3R_23031305_SNP [dm3] 3R_27205583_SNP [dm6]	G	A	3.636e^-4	0.758	INTERGENIC	regulatory region REDfly_CRMs
3R	25427694	3R_25427694_SNP [dm3] 3R_29601972_SNP [dm6]	C	G	3.638e^-4	0.758	INTRON alph
2L	2796837	2L_2796837_SNP [dm3] 2L_2796837_SNP [dm6]	C	A	3.638e^-4	0.758	UPSTREAM CR43821 INTRON Syt1
2L	13241037	2L_13241037_SNP [dm3] 2L_13241037_SNP [dm6]	G	A	3.643e^-4	0.758	UPSTREAM CR45330 INTRON CG5945	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5475449	2L_5475449_SNP [dm3] 2L_5475449_SNP [dm6]	T	A	3.651e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23030845	3R_23030845_SNP [dm3] 3R_27205123_SNP [dm6]	T	A	3.657e^-4	0.758	INTERGENIC	regulatory region REDfly_CRMs
2R	19442466	2R_19442466_DEL [dm3] 2R_23554943_DEL [dm6]	TTT	T	3.657e^-4	0.758	UPSTREAM pita DOWNSTREAM Rrp4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10938286	3L_10938286_SNP [dm3] 3L_10945186_SNP [dm6]	G	C	3.661e^-4	0.758	DOWNSTREAM CG34050 INTERGENIC
2L	6586711	2L_6586711_SNP [dm3] 2L_6586711_SNP [dm6]	A	G	3.664e^-4	0.758	UTR_5_PRIME CG11319
2L	4040579	2L_4040579_SNP [dm3] 2L_4040579_SNP [dm6]	G	T	3.669e^-4	0.758	INTRON ed
X	8889952	X_8889952_SNP [dm3] X_8995919_SNP [dm6]	T	C	3.671e^-4	0.758	INTRON rdgA & 1 other
2L	17326515	2L_17326515_SNP [dm3] 2L_17326515_SNP [dm6]	G	A	3.672e^-4	0.758	INTERGENIC
3R	947437	3R_947437_SNP [dm3] 3R_5121715_SNP [dm6]	T	A	3.672e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15520962	3L_15520962_SNP [dm3] 3L_15527862_SNP [dm6]	C	T	3.676e^-4	0.758	NON_SYNONYMOUS_CODING CG42728 UPSTREAM CG42729 DOWNSTREAM obst-H	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12985301	3L_12985301_SNP [dm3] 3L_12992201_SNP [dm6]	T	A	3.678e^-4	0.758	INTERGENIC
X	2804496	X_2804496_SNP [dm3] X_2910463_SNP [dm6]	A	C	3.681e^-4	0.758	INTRON kirre
2R	3969963	2R_3969963_SNP [dm3] 2R_8082458_SNP [dm6]	G	A	3.682e^-4	0.758	UPSTREAM sut1 & 1 other INTRON slv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	23301973	3R_23301973_SNP [dm3] 3R_27476251_SNP [dm6]	C	T	3.685e^-4	0.758	INTERGENIC
3R	20465330	3R_20465330_INS [dm3] 3R_24639608_INS [dm6]	A	AAGCAA	3.686e^-4	0.758	DOWNSTREAM puf INTRON puf	TF binding site mE1_TFBS_chinmo
2L	6234641	2L_6234641_SNP [dm3] 2L_6234641_SNP [dm6]	C	A	3.691e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	7243316	X_7243316_SNP [dm3] X_7349283_SNP [dm6]	T	C	3.692e^-4	0.758	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13237509	2L_13237509_SNP [dm3] 2L_13237509_SNP [dm6]	A	T	3.694e^-4	0.758	INTRON CG5867
3R	17672082	3R_17672082_SNP [dm3] 3R_21846360_SNP [dm6]	C	T	3.703e^-4	0.759	SYNONYMOUS_CODING Gr93d EXON CR44087
3R	26183460	3R_26183460_SNP [dm3] 3R_30357738_SNP [dm6]	G	C	3.708e^-4	0.759	UPSTREAM hdc INTRON hdc	TF binding site mE1_TFBS_chinmo
X	19440284	X_19440284_SNP [dm3] X_19546251_SNP [dm6]	C	G	3.711e^-4	0.759	INTRON CG32532	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	11971538	2L_11971538_SNP [dm3] 2L_11971538_SNP [dm6]	G	T	3.715e^-4	0.759	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	17097356	2L_17097356_SNP [dm3] 2L_17097356_SNP [dm6]	C	T	3.727e^-4	0.759	INTERGENIC
3L	1288372	3L_1288372_SNP [dm3] 3L_1288372_SNP [dm6]	G	C	3.733e^-4	0.759	DOWNSTREAM CG32333 INTRON CG32333
X	3423062	X_3423062_SNP [dm3] X_3529029_SNP [dm6]	A	T	3.735e^-4	0.759	INTRON CG32791
3L	1495680	3L_1495680_SNP [dm3] 3L_1495680_SNP [dm6]	A	G	3.736e^-4	0.759	INTRON CG12084	TF binding site BDTNP1_TFBS_dl
2R	20053130	2R_20053130_SNP [dm3] 2R_24165607_SNP [dm6]	A	G	3.738e^-4	0.759	INTRON CG3328
2L	8191259	2L_8191259_SNP [dm3] 2L_8191259_SNP [dm6]	C	T	3.743e^-4	0.759	SYNONYMOUS_CODING CG8475 UTR_3_PRIME CG8475 UPSTREAM CG34134	TF binding site mE1_TFBS_cad
3R	21068152	3R_21068152_SNP [dm3] 3R_25242430_SNP [dm6]	G	C	3.751e^-4	0.759	SYNONYMOUS_CODING CG11854 DOWNSTREAM to & 1 other
2R	6822250	2R_6822250_SNP [dm3] 2R_10934745_SNP [dm6]	C	T	3.751e^-4	0.759	INTERGENIC
3R	16110876	3R_16110876_SNP [dm3] 3R_20285154_SNP [dm6]	T	C	3.758e^-4	0.759	INTRON cic	TF binding site mE1_TFBS_Trl
3R	24394112	3R_24394112_SNP [dm3] 3R_28568390_SNP [dm6]	A	T	3.759e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19132451	3R_19132451_SNP [dm3] 3R_23306729_SNP [dm6]	A	T	3.760e^-4	0.759	INTRON pnt
2R	10530042	2R_10530042_SNP [dm3] 2R_14642537_SNP [dm6]	C	T	3.763e^-4	0.759	INTERGENIC
2R	3896213	2R_3896213_SNP [dm3] 2R_8008708_SNP [dm6]	A	G	3.768e^-4	0.759	DOWNSTREAM CG14762 INTRON Odc2	TF binding site mE1_TFBS_cad
3L	9511560	3L_9511560_SNP [dm3] 3L_9518460_SNP [dm6]	A	G	3.782e^-4	0.759	INTRON CG33700
2R	18197000	2R_18197000_DEL [dm3] 2R_22309495_DEL [dm6]	CC	C	3.786e^-4	0.759	INTRON wdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11808501	2R_11808501_SNP [dm3] 2R_15920996_SNP [dm6]	T	A	3.788e^-4	0.759	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14224079	2R_14224079_SNP [dm3] 2R_18336574_SNP [dm6]	G	A	3.806e^-4	0.759	INTRON sbb
3L	8861100	3L_8861100_SNP [dm3] 3L_8868000_SNP [dm6]	G	T	3.813e^-4	0.759	INTRON dally
2L	526695	2L_526695_SNP [dm3] 2L_526695_SNP [dm6]	T	G	3.816e^-4	0.759	INTRON ush	regulatory region REDfly_CRMs
X	8889845	X_8889845_SNP [dm3] X_8995812_SNP [dm6]	A	G	3.821e^-4	0.759	INTRON rdgA & 1 other
X	14881902	X_14881902_SNP [dm3] X_14987869_SNP [dm6]	A	C	3.824e^-4	0.759	INTRON eag	TF binding site BDTNP1_TFBS_dl
3L	10727206	3L_10727206_SNP [dm3] 3L_10734106_SNP [dm6]	C	A	3.827e^-4	0.759	INTERGENIC
3R	17279091	3R_17279091_SNP [dm3] 3R_21453369_SNP [dm6]	C	A	3.828e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19639232	2R_19639232_SNP [dm3] 2R_23751709_SNP [dm6]	T	C	3.829e^-4	0.759	UPSTREAM CG11300 DOWNSTREAM CG12491 INTERGENIC
3R	16101077	3R_16101077_SNP [dm3] 3R_20275355_SNP [dm6]	G	A	3.839e^-4	0.759	INTRON cic
2R	6058603	2R_6058603_SNP [dm3] 2R_10171098_SNP [dm6]	A	C	3.852e^-4	0.759	INTRON KCNQ
2L	10034876	2L_10034876_SNP [dm3] 2L_10034876_SNP [dm6]	A	C	3.865e^-4	0.759	INTRON obst-B
3R	25817988	3R_25817988_SNP [dm3] 3R_29992266_SNP [dm6]	A	T	3.866e^-4	0.759	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16427359	X_16427359_SNP [dm3] X_16533326_SNP [dm6]	C	A	3.879e^-4	0.759	UPSTREAM para INTERGENIC
2R	1076441	2R_1076441_SNP [dm3] 2R_5188936_SNP [dm6]	T	C	3.883e^-4	0.759	INTRON Nipped-A
3R	3216093	3R_3216093_SNP [dm3] 3R_7390371_SNP [dm6]	A	T	3.885e^-4	0.759	INTERGENIC
2R	14223000	2R_14223000_SNP [dm3] 2R_18335495_SNP [dm6]	G	A	3.887e^-4	0.759	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19237572	2R_19237572_SNP [dm3] 2R_23350049_SNP [dm6]	T	G	3.897e^-4	0.759	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7498478	3L_7498478_SNP [dm3] 3L_7505378_SNP [dm6]	C	T	3.898e^-4	0.759	DOWNSTREAM CG7548 INTERGENIC
2R	16918653	2R_16918653_SNP [dm3] 2R_21031148_SNP [dm6]	C	A	3.898e^-4	0.759	INTERGENIC
3L	16689633	3L_16689633_INS [dm3] 3L_16696533_INS [dm6]	T	TT	3.903e^-4	0.759	INTRON CR45179 & 2 others
3R	11476688	3R_11476688_INS [dm3] 3R_15650966_INS [dm6]	T	TGGTGGAGGGGGCT...	3.913e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6779664	2L_6779664_INS [dm3] 2L_6779664_INS [dm6]	A	AGTAC	3.914e^-4	0.759	INTRON nrv1
2L	6779670	2L_6779670_INS [dm3] 2L_6779670_INS [dm6]	A	AAA	3.914e^-4	0.759	INTRON nrv1
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	3.917e^-4	0.759	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18148360	3R_18148360_SNP [dm3] 3R_22322638_SNP [dm6]	T	G	3.919e^-4	0.759	INTRON CG34377
2R	11736495	2R_11736495_SNP [dm3] 2R_15848990_SNP [dm6]	C	T	3.923e^-4	0.759	UTR_5_PRIME tun
3L	9946295	3L_9946295_SNP [dm3] 3L_9953195_SNP [dm6]	A	T	3.927e^-4	0.759	INTRON CG34356
2L	13428318	2L_13428318_SNP [dm3] 2L_13428318_SNP [dm6]	A	C	3.929e^-4	0.759	INTRON CG42784
X	15312345	X_15312345_SNP [dm3] X_15418312_SNP [dm6]	T	C	3.929e^-4	0.759	INTRON Cngl
3L	11588572	3L_11588572_SNP [dm3] 3L_11595472_SNP [dm6]	G	C	3.933e^-4	0.759	INTERGENIC
3L	12746580	3L_12746580_SNP [dm3] 3L_12753480_SNP [dm6]	A	T	3.934e^-4	0.759	SYNONYMOUS_CODING CG10973 DOWNSTREAM CG10984
3R	19918088	3R_19918088_SNP [dm3] 3R_24092366_SNP [dm6]	A	C	3.934e^-4	0.759	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl
3R	12036822	3R_12036822_SNP [dm3] 3R_16211100_SNP [dm6]	C	T	3.940e^-4	0.759	INTERGENIC
X	5869415	X_5869415_SNP [dm3] X_5975382_SNP [dm6]	A	G	3.941e^-4	0.759	INTRON Grip
2L	16661109	2L_16661109_SNP [dm3] 2L_16661109_SNP [dm6]	G	C	3.947e^-4	0.759	SYNONYMOUS_CODING CG42389	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8884690	3R_8884690_SNP [dm3] 3R_13058968_SNP [dm6]	A	G	3.949e^-4	0.759	INTRON sim	TF binding site mE1_TFBS_Kr
2L	9627895	2L_9627895_SNP [dm3] 2L_9627895_SNP [dm6]	A	G	3.956e^-4	0.759	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13886972	2L_13886972_SNP [dm3] 2L_13886972_SNP [dm6]	C	A	3.960e^-4	0.759	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	12852376	3L_12852376_SNP [dm3] 3L_12859276_SNP [dm6]	G	A	3.973e^-4	0.759	SYNONYMOUS_CODING CG32107
2L	9543488	2L_9543488_SNP [dm3] 2L_9543488_SNP [dm6]	A	G	3.980e^-4	0.759	UTR_3_PRIME Cpr30B UPSTREAM CG13113
3L	7390746	3L_7390746_SNP [dm3] 3L_7397646_SNP [dm6]	A	C	3.989e^-4	0.759	UPSTREAM CG8562 INTRON CG32379
3R	22868327	3R_22868327_SNP [dm3] 3R_27042605_SNP [dm6]	C	T	3.993e^-4	0.759	INTRON RYa-R
2R	12385561	2R_12385561_SNP [dm3] 2R_16498056_SNP [dm6]	C	T	3.994e^-4	0.759	SYNONYMOUS_CODING CG7813
2L	6779685	2L_6779685_SNP [dm3] 2L_6779685_SNP [dm6]	C	G	3.999e^-4	0.759	INTRON nrv1
3R	3801353	3R_3801353_SNP [dm3] 3R_7975631_SNP [dm6]	T	C	3.999e^-4	0.759	SYNONYMOUS_CODING CD98hc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5891191	3L_5891191_SNP [dm3] 3L_5898091_SNP [dm6]	G	T	4.009e^-4	0.759	SYNONYMOUS_CODING CG5592 UPSTREAM Pole2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4040517	2L_4040517_SNP [dm3] 2L_4040517_SNP [dm6]	A	G	4.011e^-4	0.759	INTRON ed
2R	10637595	2R_10637595_SNP [dm3] 2R_14750090_SNP [dm6]	T	A	4.030e^-4	0.759	UTR_3_PRIME AttB DOWNSTREAM Rpn6 & 1 other
2R	16931578	2R_16931578_SNP [dm3] 2R_21044073_SNP [dm6]	G	A	4.034e^-4	0.759	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18022480	X_18022480_SNP [dm3] X_18128447_SNP [dm6]	G	A	4.039e^-4	0.759	DOWNSTREAM mir-210 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11486384	3L_11486384_SNP [dm3] 3L_11493284_SNP [dm6]	T	C	4.041e^-4	0.759	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10233208	2R_10233208_SNP [dm3] 2R_14345703_SNP [dm6]	C	T	4.047e^-4	0.759	INTRON Shroom
3L	20434635	3L_20434635_INS [dm3] 3L_20441535_INS [dm6]	G	GAAAACCTG	4.048e^-4	0.759	UPSTREAM CG5910 DOWNSTREAM CR43943 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20795177	2L_20795177_SNP [dm3] 2L_20795177_SNP [dm6]	G	C	4.050e^-4	0.759	INTRON vari EXON CR44146
3L	19330069	3L_19330069_SNP [dm3] 3L_19336969_SNP [dm6]	G	A	4.052e^-4	0.759	INTRON pip
3R	16428600	3R_16428600_SNP [dm3] 3R_20602878_SNP [dm6]	G	T	4.062e^-4	0.759	INTRON bon
3L	11851985	3L_11851985_SNP [dm3] 3L_11858885_SNP [dm6]	A	T	4.067e^-4	0.759	INTRON CG44837
3R	13245314	3R_13245314_SNP [dm3] 3R_17419592_SNP [dm6]	C	T	4.069e^-4	0.759	DOWNSTREAM CG42834 INTERGENIC
3R	25837960	3R_25837960_SNP [dm3] 3R_30012238_SNP [dm6]	C	T	4.069e^-4	0.759	INTRON CG7920	TF binding site mE1_TFBS_cad
2L	17121935	2L_17121935_SNP [dm3] 2L_17121935_SNP [dm6]	A	T	4.076e^-4	0.759	INTERGENIC
3R	14147699	3R_14147699_SNP [dm3] 3R_18321977_SNP [dm6]	C	A	4.076e^-4	0.759	INTRON CG31235
2L	9032725	2L_9032725_SNP [dm3] 2L_9032725_SNP [dm6]	A	G	4.087e^-4	0.759	UPSTREAM CG9582 & 1 other INTERGENIC
2R	4421074	2R_4421074_SNP [dm3] 2R_8533569_SNP [dm6]	G	A	4.089e^-4	0.759	INTERGENIC
3L	13596624	3L_13596624_SNP [dm3] 3L_13603524_SNP [dm6]	A	G	4.096e^-4	0.759	INTRON bru-3
3R	16099092	3R_16099092_SNP [dm3] 3R_20273370_SNP [dm6]	T	A	4.102e^-4	0.759	INTRON cic
X	18048748	X_18048748_SNP [dm3] X_18154715_SNP [dm6]	G	A	4.103e^-4	0.759	UPSTREAM Frq1 INTERGENIC	TF binding site mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

Cuticul_2_Me_C26_C27 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results