DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.155e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.008977

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	11.749	0.0028

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3018 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	11442836	2L_11442836_SNP [dm3] 2L_11442836_SNP [dm6]	G	A	4.230e^-8	0.033	INTRON salm
3R	13148567	3R_13148567_SNP [dm3] 3R_17322845_SNP [dm6]	T	C	4.364e^-8	0.033	INTRON beat-IIa
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	5.323e^-8	0.033	INTRON salm
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	7.247e^-8	0.034	INTRON salm
2L	11442828	2L_11442828_INS [dm3] 2L_11442828_INS [dm6]	A	AATTGAAATTATGCAC...	1.064e^-7	0.04	INTRON salm
3R	8253437	3R_8253437_SNP [dm3] 3R_12427715_SNP [dm6]	C	T	1.286e^-7	0.04	NON_SYNONYMOUS_CODING Sas DOWNSTREAM CG5641	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11442910	2L_11442910_INS [dm3] 2L_11442910_INS [dm6]	A	ATGGCTT	2.558e^-7	0.068	INTRON salm
3R	13148362	3R_13148362_SNP [dm3] 3R_17322640_SNP [dm6]	A	G	2.904e^-7	0.068	INTRON beat-IIa
3R	7768516	3R_7768516_SNP [dm3] 3R_11942794_SNP [dm6]	T	C	4.338e^-7	0.075	INTRON Cad87A
3R	7768547	3R_7768547_SNP [dm3] 3R_11942825_SNP [dm6]	A	T	5.028e^-7	0.075	INTRON Cad87A
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	5.159e^-7	0.075	INTRON salm
2L	11442474	2L_11442474_SNP [dm3] 2L_11442474_SNP [dm6]	C	A	5.212e^-7	0.075	INTRON salm
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	5.226e^-7	0.075	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
2L	11442707	2L_11442707_SNP [dm3] 2L_11442707_SNP [dm6]	A	C	5.974e^-7	0.077	INTRON salm
2L	11442875	2L_11442875_DEL [dm3] 2L_11442875_DEL [dm6]	CAC	T	6.188e^-7	0.077	INTRON salm
3R	23900528	3R_23900528_DEL [dm3] 3R_28074806_DEL [dm6]	GCAAT	G	9.571e^-7	0.112	INTRON CG34362
3R	12861402	3R_12861402_SNP [dm3] 3R_17035680_SNP [dm6]	G	A	1.132e^-6	0.125	SYNONYMOUS_CODING CG4009 DOWNSTREAM CG18213	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7768481	3R_7768481_SNP [dm3] 3R_11942759_SNP [dm6]	G	A	1.213e^-6	0.126	INTRON Cad87A
2L	11442809	2L_11442809_SNP [dm3] 2L_11442809_SNP [dm6]	A	C	1.302e^-6	0.126	INTRON salm
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	1.407e^-6	0.126	INTRON salm
3R	13148379	3R_13148379_SNP [dm3] 3R_17322657_SNP [dm6]	A	G	1.416e^-6	0.126	INTRON beat-IIa
2L	11442585	2L_11442585_SNP [dm3] 2L_11442585_SNP [dm6]	A	G	1.754e^-6	0.143	INTRON salm
3R	9619209	3R_9619209_SNP [dm3] 3R_13793487_SNP [dm6]	A	T	1.824e^-6	0.143	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12465793	3L_12465793_SNP [dm3] 3L_12472693_SNP [dm6]	T	C	1.834e^-6	0.143	INTRON CG10616
2L	11442658	2L_11442658_SNP [dm3] 2L_11442658_SNP [dm6]	C	A	1.901e^-6	0.143	INTRON salm
3R	7768218	3R_7768218_SNP [dm3] 3R_11942496_SNP [dm6]	A	C	2.128e^-6	0.154	INTRON Cad87A
3L	11892865	3L_11892865_SNP [dm3] 3L_11899765_SNP [dm6]	G	A	2.524e^-6	0.17	INTRON CG44837 & 1 other
3R	8344644	3R_8344644_SNP [dm3] 3R_12518922_SNP [dm6]	C	T	2.613e^-6	0.17	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_inv
2L	11442729	2L_11442729_SNP [dm3] 2L_11442729_SNP [dm6]	C	T	2.628e^-6	0.17	INTRON salm
3R	20006816	3R_20006816_SNP [dm3] 3R_24181094_SNP [dm6]	A	C	3.082e^-6	0.193	UTR_3_PRIME CG13606 INTRON CG13606
2L	7921416	2L_7921416_SNP [dm3] 2L_7921416_SNP [dm6]	T	C	3.182e^-6	0.193	INTRON Snoo
2L	11442850	2L_11442850_SNP [dm3] 2L_11442850_SNP [dm6]	G	C	3.629e^-6	0.207	INTRON salm
2L	12089190	2L_12089190_SNP [dm3] 2L_12089190_SNP [dm6]	A	G	3.637e^-6	0.207	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	4.076e^-6	0.219	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7762307	3R_7762307_SNP [dm3] 3R_11936585_SNP [dm6]	T	A	4.085e^-6	0.219	INTRON Cad87A
X	17600332	X_17600332_SNP [dm3] X_17706299_SNP [dm6]	G	T	4.208e^-6	0.219	UTR_3_PRIME par-6
2L	11442524	2L_11442524_SNP [dm3] 2L_11442524_SNP [dm6]	G	T	4.398e^-6	0.223	INTRON salm
2L	11442751	2L_11442751_SNP [dm3] 2L_11442751_SNP [dm6]	T	C	5.265e^-6	0.26	INTRON salm
2L	11442523	2L_11442523_SNP [dm3] 2L_11442523_SNP [dm6]	C	T	5.613e^-6	0.267	INTRON salm
3L	12549675	3L_12549675_SNP [dm3] 3L_12556575_SNP [dm6]	A	T	5.690e^-6	0.267	INTRON sowah
2L	16497401	2L_16497401_SNP [dm3] 2L_16497401_SNP [dm6]	A	C	6.508e^-6	0.29	INTRON Tpr2
3L	4521889	3L_4521889_SNP [dm3] 3L_4521889_SNP [dm6]	T	A	6.661e^-6	0.29	INTRON Tie
3R	7760070	3R_7760070_SNP [dm3] 3R_11934348_SNP [dm6]	A	G	6.870e^-6	0.29	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4521888	3L_4521888_SNP [dm3] 3L_4521888_SNP [dm6]	G	A	7.007e^-6	0.29	INTRON Tie
3R	7768136	3R_7768136_SNP [dm3] 3R_11942414_SNP [dm6]	A	G	7.076e^-6	0.29	INTRON Cad87A
2L	12760060	2L_12760060_SNP [dm3] 2L_12760060_SNP [dm6]	T	A	7.176e^-6	0.29	DOWNSTREAM CG15483 INTERGENIC
2L	11442495	2L_11442495_SNP [dm3] 2L_11442495_SNP [dm6]	T	C	7.668e^-6	0.29	INTRON salm
2R	14222094	2R_14222094_SNP [dm3] 2R_18334589_SNP [dm6]	T	G	7.740e^-6	0.29	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14223000	2R_14223000_SNP [dm3] 2R_18335495_SNP [dm6]	G	A	7.937e^-6	0.29	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10183556	3R_10183556_SNP [dm3] 3R_14357834_SNP [dm6]	T	C	7.945e^-6	0.29	DOWNSTREAM CG31320 INTRON NK7.1
3R	7762214	3R_7762214_SNP [dm3] 3R_11936492_SNP [dm6]	T	A	7.981e^-6	0.29	INTRON Cad87A
2R	13888271	2R_13888271_SNP [dm3] 2R_18000766_SNP [dm6]	A	T	8.032e^-6	0.29	INTRON dpr13
2R	18559286	2R_18559286_SNP [dm3] 2R_22671781_SNP [dm6]	T	C	8.427e^-6	0.298	SYNONYMOUS_CODING RYBP
3L	12475243	3L_12475243_SNP [dm3] 3L_12482143_SNP [dm6]	C	G	8.733e^-6	0.299	UPSTREAM CG33725 INTRON CG10663
X	5113577	X_5113577_SNP [dm3] X_5219544_SNP [dm6]	A	G	8.788e^-6	0.299	INTRON CG15465 & 1 other
3L	4520080	3L_4520080_SNP [dm3] 3L_4520080_SNP [dm6]	G	A	9.054e^-6	0.299	INTRON Tie
2L	16541496	2L_16541496_SNP [dm3] 2L_16541496_SNP [dm6]	A	G	9.091e^-6	0.299	INTERGENIC
2R	14222237	2R_14222237_SNP [dm3] 2R_18334732_SNP [dm6]	G	A	9.867e^-6	0.319	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	7757573	3R_7757573_SNP [dm3] 3R_11931851_SNP [dm6]	C	G	1.089e^-5	0.346	NON_SYNONYMOUS_CODING CG14731 INTRON Cad87A
3R	14904279	3R_14904279_SNP [dm3] 3R_19078557_SNP [dm6]	T	C	1.133e^-5	0.354	INTRON cdi
X	6167713	X_6167713_SNP [dm3] X_6273680_SNP [dm6]	C	T	1.153e^-5	0.354	SYNONYMOUS_CODING Spt6	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14530532	3L_14530532_SNP [dm3] 3L_14537432_SNP [dm6]	G	A	1.176e^-5	0.356	UPSTREAM Mpcp DOWNSTREAM CG43246 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	1.270e^-5	0.369	INTRON salm
3R	1189231	3R_1189231_SNP [dm3] 3R_5363509_SNP [dm6]	T	C	1.291e^-5	0.369	INTRON Cerk
X	7243316	X_7243316_SNP [dm3] X_7349283_SNP [dm6]	T	C	1.316e^-5	0.369	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10834507	2L_10834507_SNP [dm3] 2L_10834507_SNP [dm6]	C	T	1.328e^-5	0.369	INTRON Nos
2L	11442663	2L_11442663_SNP [dm3] 2L_11442663_SNP [dm6]	A	T	1.353e^-5	0.369	INTRON salm
2L	16487919	2L_16487919_SNP [dm3] 2L_16487919_SNP [dm6]	G	T	1.354e^-5	0.369	UPSTREAM CG4580 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2R	14221804	2R_14221804_SNP [dm3] 2R_18334299_SNP [dm6]	A	T	1.386e^-5	0.369	INTRON sbb
3R	7762299	3R_7762299_SNP [dm3] 3R_11936577_SNP [dm6]	C	T	1.387e^-5	0.369	INTRON Cad87A
3R	7762171	3R_7762171_SNP [dm3] 3R_11936449_SNP [dm6]	T	C	1.398e^-5	0.369	INTRON Cad87A
3R	7762173	3R_7762173_SNP [dm3] 3R_11936451_SNP [dm6]	G	T	1.426e^-5	0.372	INTRON Cad87A
3R	15382140	3R_15382140_SNP [dm3] 3R_19556418_SNP [dm6]	C	T	1.580e^-5	0.398	INTRON Dys
X	18446528	X_18446528_SNP [dm3] X_18552495_SNP [dm6]	C	G	1.583e^-5	0.398	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17602083	X_17602083_SNP [dm3] X_17708050_SNP [dm6]	G	A	1.590e^-5	0.398	NON_SYNONYMOUS_CODING CG8173 DOWNSTREAM par-6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12475285	3L_12475285_SNP [dm3] 3L_12482185_SNP [dm6]	C	G	1.655e^-5	0.399	UPSTREAM CG33725 INTRON CG10663
3R	2350038	3R_2350038_SNP [dm3] 3R_6524316_SNP [dm6]	T	C	1.672e^-5	0.399	INTERGENIC
3R	7763496	3R_7763496_SNP [dm3] 3R_11937774_SNP [dm6]	G	A	1.685e^-5	0.399	INTRON Cad87A
3R	4401213	3R_4401213_SNP [dm3] 3R_8575491_SNP [dm6]	G	A	1.704e^-5	0.399	INTERGENIC
3L	12475274	3L_12475274_SNP [dm3] 3L_12482174_SNP [dm6]	G	A	1.729e^-5	0.399	UPSTREAM CG33725 INTRON CG10663
3L	4522090	3L_4522090_SNP [dm3] 3L_4522090_SNP [dm6]	G	A	1.737e^-5	0.399	INTRON Tie
X	2997851	X_2997851_SNP [dm3] X_3103818_SNP [dm6]	A	T	1.744e^-5	0.399	INTRON kirre
3L	4223777	3L_4223777_INS [dm3] 3L_4223777_INS [dm6]	A	ACTGAACA	1.787e^-5	0.404	UTR_3_PRIME CG43367 DOWNSTREAM ImpL2	TF binding site mE1_TFBS_inv
3R	7762112	3R_7762112_SNP [dm3] 3R_11936390_SNP [dm6]	G	A	1.844e^-5	0.412	INTRON Cad87A
2L	4789096	2L_4789096_DEL [dm3] 2L_4789096_DEL [dm6]	AGGTATA	A	1.888e^-5	0.417	INTRON CG15630
2L	17872148	2L_17872148_SNP [dm3] 2L_17872148_SNP [dm6]	A	G	1.912e^-5	0.417	INTRON CadN2
3L	19957640	3L_19957640_SNP [dm3] 3L_19964540_SNP [dm6]	G	A	2.010e^-5	0.433	INTRON Ac76E
2L	11443197	2L_11443197_SNP [dm3] 2L_11443197_SNP [dm6]	G	A	2.039e^-5	0.435	INTRON salm
3R	8209974	3R_8209974_SNP [dm3] 3R_12384252_SNP [dm6]	T	A	2.079e^-5	0.436	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	8902108	X_8902108_SNP [dm3] X_9008075_SNP [dm6]	A	G	2.141e^-5	0.436	INTRON rdgA & 1 other
2L	11471977	2L_11471977_SNP [dm3] 2L_11471977_SNP [dm6]	G	T	2.161e^-5	0.436	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8034933	3L_8034933_INS [dm3] 3L_8041833_INS [dm6]	A	AGAA	2.167e^-5	0.436	INTRON nmo
2L	11442767	2L_11442767_SNP [dm3] 2L_11442767_SNP [dm6]	T	C	2.207e^-5	0.436	INTRON salm
3R	13147915	3R_13147915_SNP [dm3] 3R_17322193_SNP [dm6]	G	A	2.236e^-5	0.436	INTRON beat-IIa	TF binding site mE1_TFBS_inv
3L	19970676	3L_19970676_SNP [dm3] 3L_19977576_SNP [dm6]	G	A	2.243e^-5	0.436	UTR_3_PRIME Ac76E
3L	6622065	3L_6622065_SNP [dm3] 3L_6628965_SNP [dm6]	C	T	2.260e^-5	0.436	SYNONYMOUS_CODING GluRIA
3R	14899338	3R_14899338_SNP [dm3] 3R_19073616_SNP [dm6]	G	T	2.281e^-5	0.436	INTRON cdi	TF binding site mE1_TFBS_chinmo
3R	10630735	3R_10630735_SNP [dm3] 3R_14805013_SNP [dm6]	A	T	2.322e^-5	0.436	UTR_3_PRIME btsz DOWNSTREAM CG14857
X	8208722	X_8208722_SNP [dm3] X_8314689_SNP [dm6]	A	C	2.327e^-5	0.436	INTRON nAChRalpha3
3R	13923480	3R_13923480_SNP [dm3] 3R_18097758_SNP [dm6]	T	G	2.353e^-5	0.436	INTRON sr
3R	7770487	3R_7770487_SNP [dm3] 3R_11944765_SNP [dm6]	A	G	2.362e^-5	0.436	INTRON Cad87A
2L	12578644	2L_12578644_SNP [dm3] 2L_12578644_SNP [dm6]	T	C	2.368e^-5	0.436	INTERGENIC
3R	6473711	3R_6473711_SNP [dm3] 3R_10647989_SNP [dm6]	A	G	2.447e^-5	0.444	INTERGENIC
3R	7770341	3R_7770341_SNP [dm3] 3R_11944619_SNP [dm6]	C	G	2.518e^-5	0.444	INTRON Cad87A
3R	14899609	3R_14899609_SNP [dm3] 3R_19073887_SNP [dm6]	G	T	2.519e^-5	0.444	INTRON cdi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11471989	2L_11471989_SNP [dm3] 2L_11471989_SNP [dm6]	T	C	2.528e^-5	0.444	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19958027	3L_19958027_SNP [dm3] 3L_19964927_SNP [dm6]	G	A	2.566e^-5	0.444	SYNONYMOUS_CODING Ac76E
3R	14042988	3R_14042988_SNP [dm3] 3R_18217266_SNP [dm6]	T	C	2.576e^-5	0.444	SYNONYMOUS_CODING CG14314 DOWNSTREAM CG7183	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	2.618e^-5	0.444	INTRON salm
3L	4521872	3L_4521872_SNP [dm3] 3L_4521872_SNP [dm6]	T	A	2.635e^-5	0.444	INTRON Tie
2R	18662007	2R_18662007_SNP [dm3] 2R_22774502_SNP [dm6]	T	A	2.701e^-5	0.444	INTRON CG42260
3R	9676783	3R_9676783_DEL [dm3] 3R_13851061_DEL [dm6]	GGAAAATTAAGCTATGCGAA...	CCC	2.706e^-5	0.444	INTERGENIC
3L	17231641	3L_17231641_SNP [dm3] 3L_17238541_SNP [dm6]	A	C	2.714e^-5	0.444	UPSTREAM Rbp6 DOWNSTREAM CG6512 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2706525	2L_2706525_SNP [dm3] 2L_2706525_SNP [dm6]	C	A	2.720e^-5	0.444	INTRON CG31690
3R	13989872	3R_13989872_SNP [dm3] 3R_18164150_SNP [dm6]	C	T	2.753e^-5	0.444	SYNONYMOUS_CODING CG7218 UPSTREAM Cbp20	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4519979	3L_4519979_SNP [dm3] 3L_4519979_SNP [dm6]	T	C	2.760e^-5	0.444	INTRON Tie
2R	13752358	2R_13752358_SNP [dm3] 2R_17864853_SNP [dm6]	G	T	2.817e^-5	0.444	NON_SYNONYMOUS_CODING thr	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
2R	19137292	2R_19137292_SNP [dm3] 2R_23249769_SNP [dm6]	A	G	2.841e^-5	0.444	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	7756961	3R_7756961_SNP [dm3] 3R_11931239_SNP [dm6]	A	T	2.849e^-5	0.444	UPSTREAM CG14731 INTRON Cad87A
3L	8034940	3L_8034940_SNP [dm3] 3L_8041840_SNP [dm6]	A	G	2.865e^-5	0.444	INTRON nmo
3L	10893620	3L_10893620_SNP [dm3] 3L_10900520_SNP [dm6]	A	G	2.866e^-5	0.444	INTERGENIC
2L	10586152	2L_10586152_SNP [dm3] 2L_10586152_SNP [dm6]	G	C	2.915e^-5	0.446	INTRON Trim9	TF binding site mE1_TFBS_chinmo
3L	12487143	3L_12487143_SNP [dm3] 3L_12494043_SNP [dm6]	T	G	2.933e^-5	0.446	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	2799791	3R_2799791_SNP [dm3] 3R_6974069_SNP [dm6]	T	C	2.950e^-5	0.446	INTRON Antp	TF binding site mE1_TFBS_bab1
2R	9591534	2R_9591534_SNP [dm3] 2R_13704029_SNP [dm6]	T	C	2.975e^-5	0.446	INTRON fas
2L	3232457	2L_3232457_SNP [dm3] 2L_3232457_SNP [dm6]	T	G	2.999e^-5	0.446	INTERGENIC
3R	8154080	3R_8154080_SNP [dm3] 3R_12328358_SNP [dm6]	G	A	3.100e^-5	0.457	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
X	7743962	X_7743962_SNP [dm3] X_7849929_SNP [dm6]	T	C	3.143e^-5	0.457	INTERGENIC
3L	8974269	3L_8974269_SNP [dm3] 3L_8981169_SNP [dm6]	G	A	3.203e^-5	0.457	UPSTREAM CG13314 INTERGENIC
3R	14899269	3R_14899269_SNP [dm3] 3R_19073547_SNP [dm6]	G	A	3.203e^-5	0.457	INTRON cdi	TF binding site mE1_TFBS_chinmo
3R	15769337	3R_15769337_SNP [dm3] 3R_19943615_SNP [dm6]	A	C	3.204e^-5	0.457	INTRON Hs6st
2R	4074315	2R_4074315_SNP [dm3] 2R_8186810_SNP [dm6]	T	A	3.238e^-5	0.457	INTRON LRP1
3R	13019438	3R_13019438_SNP [dm3] 3R_17193716_SNP [dm6]	C	T	3.253e^-5	0.457	INTRON Mur89F
3R	8943578	3R_8943578_SNP [dm3] 3R_13117856_SNP [dm6]	A	T	3.308e^-5	0.457	INTRON timeout
X	5113223	X_5113223_INS [dm3] X_5219190_INS [dm6]	A	ATA	3.312e^-5	0.457	INTRON CG15465 & 1 other
3R	7760866	3R_7760866_SNP [dm3] 3R_11935144_SNP [dm6]	G	A	3.369e^-5	0.457	INTRON Cad87A
3R	16636573	3R_16636573_SNP [dm3] 3R_20810851_SNP [dm6]	C	G	3.378e^-5	0.457	UTR_3_PRIME Fancd2 DOWNSTREAM Syp
2R	11604491	2R_11604491_SNP [dm3] 2R_15716986_SNP [dm6]	T	A	3.405e^-5	0.457	INTERGENIC
3L	7993221	3L_7993221_SNP [dm3] 3L_8000121_SNP [dm6]	T	C	3.436e^-5	0.457	INTRON nmo
2L	11012152	2L_11012152_DEL [dm3] 2L_11012152_DEL [dm6]	GTCATTAGAT	A	3.446e^-5	0.457	DOWNSTREAM dUTPase INTERGENIC
3R	13148095	3R_13148095_SNP [dm3] 3R_17322373_SNP [dm6]	C	T	3.458e^-5	0.457	INTRON beat-IIa
3L	8739671	3L_8739671_INS [dm3] 3L_8746571_INS [dm6]	A	ATGTA	3.463e^-5	0.457	INTERGENIC	regulatory region REDfly_CRMs
3R	7762323	3R_7762323_SNP [dm3] 3R_11936601_SNP [dm6]	A	C	3.501e^-5	0.459	INTRON Cad87A
3R	11852780	3R_11852780_SNP [dm3] 3R_16027058_SNP [dm6]	T	G	3.550e^-5	0.459	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	7437584	2L_7437584_SNP [dm3] 2L_7437584_SNP [dm6]	C	G	3.555e^-5	0.459	UTR_5_PRIME CG5973	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	9830051	X_9830051_SNP [dm3] X_9936018_SNP [dm6]	C	G	3.597e^-5	0.459	INTERGENIC
3L	11172923	3L_11172923_SNP [dm3] 3L_11179823_SNP [dm6]	A	G	3.606e^-5	0.459	INTRON GlcAT-P
3R	13019598	3R_13019598_SNP [dm3] 3R_17193876_SNP [dm6]	G	T	3.641e^-5	0.459	INTRON Mur89F
3R	24938557	3R_24938557_INS [dm3] 3R_29112835_INS [dm6]	C	CTCTC	3.657e^-5	0.459	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15019799	2L_15019799_SNP [dm3] 2L_15019799_SNP [dm6]	A	T	3.690e^-5	0.459	INTRON GABA-B-R1
3R	20914909	3R_20914909_SNP [dm3] 3R_25089187_SNP [dm6]	T	C	3.713e^-5	0.459	INTERGENIC
3R	20998528	3R_20998528_SNP [dm3] 3R_25172806_SNP [dm6]	A	C	3.729e^-5	0.459	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	17576482	X_17576482_SNP [dm3] X_17682449_SNP [dm6]	C	G	3.771e^-5	0.459	UTR_5_PRIME chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16553130	2L_16553130_SNP [dm3] 2L_16553130_SNP [dm6]	G	T	3.805e^-5	0.459	INTRON CG42389
X	17601408	X_17601408_SNP [dm3] X_17707375_SNP [dm6]	C	T	3.832e^-5	0.459	DOWNSTREAM CG8173 & 1 other INTERGENIC
3R	7759591	3R_7759591_SNP [dm3] 3R_11933869_SNP [dm6]	A	T	3.858e^-5	0.459	DOWNSTREAM CG14731 INTRON Cad87A
3L	19958060	3L_19958060_SNP [dm3] 3L_19964960_SNP [dm6]	C	T	3.906e^-5	0.459	SYNONYMOUS_CODING Ac76E
3R	10169682	3R_10169682_SNP [dm3] 3R_14343960_SNP [dm6]	C	T	3.909e^-5	0.459	INTRON NK7.1
3R	7768629	3R_7768629_SNP [dm3] 3R_11942907_SNP [dm6]	C	T	3.916e^-5	0.459	INTRON Cad87A
3L	3271378	3L_3271378_SNP [dm3] 3L_3271378_SNP [dm6]	G	T	3.936e^-5	0.459	INTRON CG14960
3R	12105207	3R_12105207_SNP [dm3] 3R_16279485_SNP [dm6]	G	A	3.937e^-5	0.459	INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_Trl
3L	6381159	3L_6381159_SNP [dm3] 3L_6388059_SNP [dm6]	T	A	4.012e^-5	0.464	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6973990	3L_6973990_SNP [dm3] 3L_6980890_SNP [dm6]	A	T	4.053e^-5	0.466	UPSTREAM Galphai INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11449958	2L_11449958_SNP [dm3] 2L_11449958_SNP [dm6]	C	T	4.100e^-5	0.466	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	23657478	3R_23657478_SNP [dm3] 3R_27831756_SNP [dm6]	G	A	4.119e^-5	0.466	INTRON CG34353
3L	3273232	3L_3273232_INS [dm3] 3L_3273232_INS [dm6]	T	TTTTTT	4.150e^-5	0.466	INTRON CG14960
2R	11422470	2R_11422470_SNP [dm3] 2R_15534965_SNP [dm6]	G	A	4.151e^-5	0.466	INTRON CG30471
3R	8363127	3R_8363127_SNP [dm3] 3R_12537405_SNP [dm6]	A	G	4.205e^-5	0.469	INTRON Octbeta3R
3L	19960383	3L_19960383_SNP [dm3] 3L_19967283_SNP [dm6]	G	A	4.262e^-5	0.472	INTRON Ac76E
2L	11012219	2L_11012219_SNP [dm3] 2L_11012219_SNP [dm6]	T	C	4.319e^-5	0.472	DOWNSTREAM dUTPase & 1 other INTERGENIC
2L	11459477	2L_11459477_SNP [dm3] 2L_11459477_SNP [dm6]	C	T	4.350e^-5	0.472	INTERGENIC	TF binding site mE1_TFBS_Kr
X	17606529	X_17606529_SNP [dm3] X_17712496_SNP [dm6]	C	T	4.384e^-5	0.472	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	16296588	X_16296588_SNP [dm3] X_16402555_SNP [dm6]	A	G	4.421e^-5	0.472	SYNONYMOUS_CODING CG9981
3L	11348894	3L_11348894_SNP [dm3] 3L_11355794_SNP [dm6]	C	G	4.437e^-5	0.472	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11442989	2L_11442989_SNP [dm3] 2L_11442989_SNP [dm6]	T	C	4.440e^-5	0.472	INTRON salm
2R	17478376	2R_17478376_SNP [dm3] 2R_21590871_SNP [dm6]	G	A	4.463e^-5	0.472	NON_SYNONYMOUS_CODING CG33225
3R	4129432	3R_4129432_SNP [dm3] 3R_8303710_SNP [dm6]	A	G	4.477e^-5	0.472	SYNONYMOUS_CODING nac DOWNSTREAM mRpL1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	12312504	2L_12312504_SNP [dm3] 2L_12312504_SNP [dm6]	A	T	4.482e^-5	0.472	DOWNSTREAM aret INTRON aret
X	14147488	X_14147488_SNP [dm3] X_14253455_SNP [dm6]	T	A	4.538e^-5	0.472	NON_SYNONYMOUS_CODING mud	TF binding site mE1_TFBS_sens
3R	7761292	3R_7761292_SNP [dm3] 3R_11935570_SNP [dm6]	G	T	4.594e^-5	0.472	INTRON Cad87A
2L	11012164	2L_11012164_SNP [dm3] 2L_11012164_SNP [dm6]	A	T	4.610e^-5	0.472	DOWNSTREAM dUTPase INTERGENIC
3R	10846773	3R_10846773_SNP [dm3] 3R_15021051_SNP [dm6]	T	G	4.655e^-5	0.472	INTERGENIC
2R	11138845	2R_11138845_SNP [dm3] 2R_15251340_SNP [dm6]	T	C	4.663e^-5	0.472	INTRON scb	TF binding site mE1_TFBS_cad
X	7871248	X_7871248_SNP [dm3] X_7977215_SNP [dm6]	A	T	4.666e^-5	0.472	INTRON sn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23657436	3R_23657436_SNP [dm3] 3R_27831714_SNP [dm6]	A	G	4.683e^-5	0.472	INTRON CG34353
3R	8344006	3R_8344006_SNP [dm3] 3R_12518284_SNP [dm6]	A	G	4.719e^-5	0.472	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	17576001	X_17576001_SNP [dm3] X_17681968_SNP [dm6]	C	A	4.719e^-5	0.472	INTRON chas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16207068	3L_16207068_SNP [dm3] 3L_16213968_SNP [dm6]	C	A	4.732e^-5	0.472	NON_SYNONYMOUS_CODING CG13073 EXON CR43891	TF binding site mE1_TFBS_HSA
3R	11852707	3R_11852707_SNP [dm3] 3R_16026985_SNP [dm6]	A	T	4.760e^-5	0.472	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	16404592	2L_16404592_SNP [dm3] 2L_16404592_SNP [dm6]	C	T	4.893e^-5	0.482	SYNONYMOUS_CODING CG5888
2R	17526429	2R_17526429_SNP [dm3] 2R_21638924_SNP [dm6]	G	A	4.941e^-5	0.482	DOWNSTREAM CG10321 INTERGENIC
2R	17457637	2R_17457637_SNP [dm3] 2R_21570132_SNP [dm6]	T	A	4.946e^-5	0.482	INTRON CG10440
3L	9964214	3L_9964214_SNP [dm3] 3L_9971114_SNP [dm6]	C	T	4.963e^-5	0.482	DOWNSTREAM CG6674 & 1 other INTERGENIC
2L	12555208	2L_12555208_SNP [dm3] 2L_12555208_SNP [dm6]	G	A	5.093e^-5	0.483	INTERGENIC
X	13210499	X_13210499_SNP [dm3] X_13316466_SNP [dm6]	G	T	5.103e^-5	0.483	INTRON IP3K2
3R	8409502	3R_8409502_SNP [dm3] 3R_12583780_SNP [dm6]	G	A	5.125e^-5	0.483	INTRON Octbeta2R
3L	364957	3L_364957_SNP [dm3] 3L_364957_SNP [dm6]	G	T	5.132e^-5	0.483	DOWNSTREAM CG13884 INTRON CG1233
3R	8033034	3R_8033034_SNP [dm3] 3R_12207312_SNP [dm6]	G	A	5.190e^-5	0.483	DOWNSTREAM tRNA:CR31356 & 1 other INTERGENIC
3R	20998499	3R_20998499_SNP [dm3] 3R_25172777_SNP [dm6]	G	A	5.214e^-5	0.483	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	13880982	3R_13880982_INS [dm3] 3R_18055260_INS [dm6]	A	ATAAAA	5.237e^-5	0.483	INTERGENIC
2L	12089057	2L_12089057_SNP [dm3] 2L_12089057_SNP [dm6]	C	T	5.281e^-5	0.483	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12152637	2L_12152637_SNP [dm3] 2L_12152637_SNP [dm6]	A	T	5.314e^-5	0.483	INTRON CG31760
3L	3447091	3L_3447091_SNP [dm3] 3L_3447091_SNP [dm6]	C	T	5.333e^-5	0.483	INTRON eIF5B
2L	11468265	2L_11468265_SNP [dm3] 2L_11468265_SNP [dm6]	C	G	5.387e^-5	0.483	INTERGENIC
2L	19580128	2L_19580128_SNP [dm3] 2L_19580128_SNP [dm6]	C	A	5.396e^-5	0.483	START_LOST CG10268 DOWNSTREAM msb1l & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	10987502	3R_10987502_SNP [dm3] 3R_15161780_SNP [dm6]	G	T	5.397e^-5	0.483	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi
3L	9605920	3L_9605920_SNP [dm3] 3L_9612820_SNP [dm6]	G	A	5.405e^-5	0.483	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11138834	2R_11138834_DEL [dm3] 2R_15251329_DEL [dm6]	TT	T	5.426e^-5	0.483	INTRON scb	TF binding site mE1_TFBS_cad
3R	14904281	3R_14904281_SNP [dm3] 3R_19078559_SNP [dm6]	T	G	5.461e^-5	0.483	INTRON cdi
3L	7635112	3L_7635112_SNP [dm3] 3L_7642012_SNP [dm6]	C	T	5.468e^-5	0.483	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17601370	X_17601370_SNP [dm3] X_17707337_SNP [dm6]	A	T	5.529e^-5	0.483	DOWNSTREAM CG8173 & 1 other INTERGENIC
3L	18916676	3L_18916676_SNP [dm3] 3L_18923576_SNP [dm6]	C	A	5.569e^-5	0.483	UTR_3_PRIME CG32204	TF binding site mE1_TFBS_chinmo
3R	15381298	3R_15381298_SNP [dm3] 3R_19555576_SNP [dm6]	G	T	5.578e^-5	0.483	INTRON Dys
3R	7760836	3R_7760836_SNP [dm3] 3R_11935114_SNP [dm6]	A	G	5.638e^-5	0.483	INTRON Cad87A
3R	13756070	3R_13756070_SNP [dm3] 3R_17930348_SNP [dm6]	G	C	5.670e^-5	0.483	INTRON cpo
3R	5422476	3R_5422476_SNP [dm3] 3R_9596754_SNP [dm6]	C	T	5.751e^-5	0.483	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12307777	2L_12307777_SNP [dm3] 2L_12307777_SNP [dm6]	C	T	5.755e^-5	0.483	INTRON aret
3R	23335837	3R_23335837_SNP [dm3] 3R_27510115_SNP [dm6]	G	A	5.760e^-5	0.483	INTERGENIC
3R	13145347	3R_13145347_SNP [dm3] 3R_17319625_SNP [dm6]	A	G	5.796e^-5	0.483	DOWNSTREAM beat-IIa INTERGENIC
3L	17370625	3L_17370625_SNP [dm3] 3L_17377525_SNP [dm6]	T	A	5.808e^-5	0.483	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	17062951	3R_17062951_SNP [dm3] 3R_21237229_SNP [dm6]	G	T	5.811e^-5	0.483	UPSTREAM e INTERGENIC
3R	21146268	3R_21146268_SNP [dm3] 3R_25320546_SNP [dm6]	C	A	5.839e^-5	0.483	UPSTREAM CG10560 DOWNSTREAM CG10562 INTERGENIC
3R	8165817	3R_8165817_SNP [dm3] 3R_12340095_SNP [dm6]	G	A	5.853e^-5	0.483	DOWNSTREAM CR44941 INTERGENIC
3L	7635133	3L_7635133_SNP [dm3] 3L_7642033_SNP [dm6]	G	A	5.860e^-5	0.483	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18212484	2R_18212484_SNP [dm3] 2R_22324979_SNP [dm6]	G	A	5.862e^-5	0.483	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
2L	10853182	2L_10853182_SNP [dm3] 2L_10853182_SNP [dm6]	G	A	5.890e^-5	0.483	SYNONYMOUS_CODING CG43129	TF binding site mE1_TFBS_chinmo
2L	7913008	2L_7913008_SNP [dm3] 2L_7913008_SNP [dm6]	A	T	5.890e^-5	0.483	INTRON Snoo
3R	5422478	3R_5422478_SNP [dm3] 3R_9596756_SNP [dm6]	T	A	5.904e^-5	0.483	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	5.916e^-5	0.483	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	20148996	X_20148996_SNP [dm3] X_20277970_SNP [dm6]	C	G	5.940e^-5	0.483	INTERGENIC
2L	3398070	2L_3398070_SNP [dm3] 2L_3398070_SNP [dm6]	T	C	5.947e^-5	0.483	UTR_5_PRIME CG34175 UPSTREAM CR44792
3L	11172885	3L_11172885_SNP [dm3] 3L_11179785_SNP [dm6]	G	A	6.000e^-5	0.483	INTRON GlcAT-P
3R	8249773	3R_8249773_SNP [dm3] 3R_12424051_SNP [dm6]	C	G	6.005e^-5	0.483	UTR_3_PRIME Pp1-87B DOWNSTREAM CG17202	TF binding site mE1_TFBS_cad
2R	18555951	2R_18555951_SNP [dm3] 2R_22668446_SNP [dm6]	C	G	6.093e^-5	0.488	UPSTREAM CG13516 DOWNSTREAM CG30273 INTRON CG30269	TF binding site mE1_TFBS_cad
3L	24297951	3L_24297951_SNP [dm3] 3L_24304851_SNP [dm6]	C	A	6.156e^-5	0.49	INTERGENIC
3R	23657317	3R_23657317_SNP [dm3] 3R_27831595_SNP [dm6]	G	A	6.162e^-5	0.49	INTRON CG34353
3L	12685551	3L_12685551_DEL [dm3] 3L_12692451_DEL [dm6]	ATAAAA	A	6.217e^-5	0.491	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	7871318	X_7871318_SNP [dm3] X_7977285_SNP [dm6]	C	T	6.237e^-5	0.491	INTRON sn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8635952	X_8635952_SNP [dm3] X_8741919_SNP [dm6]	T	A	6.264e^-5	0.491	INTERGENIC
3R	14446914	3R_14446914_SNP [dm3] 3R_18621192_SNP [dm6]	C	A	6.336e^-5	0.491	UPSTREAM CG14304 INTRON qin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12859387	3R_12859387_SNP [dm3] 3R_17033665_SNP [dm6]	G	T	6.417e^-5	0.491	UTR_3_PRIME CG4009 DOWNSTREAM CG4009 & 1 other
2L	11435829	2L_11435829_SNP [dm3] 2L_11435829_SNP [dm6]	A	G	6.424e^-5	0.491	UTR_3_PRIME salm	TF binding site BDTNP1_TFBS_twi
3R	21011272	3R_21011272_SNP [dm3] 3R_25185550_SNP [dm6]	A	G	6.433e^-5	0.491	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13437544	2L_13437544_SNP [dm3] 2L_13437544_SNP [dm6]	A	G	6.526e^-5	0.491	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
2L	10834508	2L_10834508_SNP [dm3] 2L_10834508_SNP [dm6]	G	T	6.528e^-5	0.491	INTRON Nos
3R	8283455	3R_8283455_SNP [dm3] 3R_12457733_SNP [dm6]	G	A	6.551e^-5	0.491	NON_SYNONYMOUS_CODING trus DOWNSTREAM CG5961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	6.571e^-5	0.491	INTRON Octbeta3R
3R	23657466	3R_23657466_DEL [dm3] 3R_27831744_DEL [dm6]	CC	C	6.598e^-5	0.491	INTRON CG34353
2L	14914097	2L_14914097_SNP [dm3] 2L_14914097_SNP [dm6]	C	A	6.620e^-5	0.491	INTRON CG42313
3L	12138648	3L_12138648_SNP [dm3] 3L_12145548_SNP [dm6]	T	C	6.635e^-5	0.491	UPSTREAM Nrx-IV INTRON CG5642	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	11454725	2L_11454725_SNP [dm3] 2L_11454725_SNP [dm6]	G	A	6.664e^-5	0.491	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	11455062	2L_11455062_SNP [dm3] 2L_11455062_SNP [dm6]	A	T	6.671e^-5	0.491	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16459539	2L_16459539_SNP [dm3] 2L_16459539_SNP [dm6]	C	T	6.704e^-5	0.491	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	4157013	2L_4157013_SNP [dm3] 2L_4157013_SNP [dm6]	A	T	6.726e^-5	0.491	INTERGENIC
2R	4216491	2R_4216491_SNP [dm3] 2R_8328986_SNP [dm6]	T	C	6.749e^-5	0.491	INTRON pdm3
2L	13208413	2L_13208413_SNP [dm3] 2L_13208413_SNP [dm6]	G	C	6.751e^-5	0.491	SPLICE_SITE_REGION Pect INTRON Pect
2L	16541551	2L_16541551_SNP [dm3] 2L_16541551_SNP [dm6]	A	C	6.773e^-5	0.491	UPSTREAM CG31816 INTERGENIC
3L	9507246	3L_9507246_SNP [dm3] 3L_9514146_SNP [dm6]	C	A	6.790e^-5	0.491	UTR_3_PRIME CG33700 UPSTREAM CG33702 & 1 other
3R	5427235	3R_5427235_DEL [dm3] 3R_9601513_DEL [dm6]	GCTAACTAACATTTTTCCTA...	G	6.790e^-5	0.491	INTRON CG8312
3R	2626675	3R_2626675_SNP [dm3] 3R_6800953_SNP [dm6]	A	G	6.835e^-5	0.491	INTRON Dfd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	21880619	X_21880619_SNP [dm3] X_22478783_SNP [dm6]	T	G	6.895e^-5	0.491	INTRON CG12576
2R	12335079	2R_12335079_SNP [dm3] 2R_16447574_SNP [dm6]	G	C	6.907e^-5	0.491	DOWNSTREAM CG15925 INTERGENIC
2L	11012165	2L_11012165_SNP [dm3] 2L_11012165_SNP [dm6]	C	A	6.913e^-5	0.491	DOWNSTREAM dUTPase INTERGENIC
3L	3278992	3L_3278992_SNP [dm3] 3L_3278992_SNP [dm6]	A	G	6.935e^-5	0.491	INTERGENIC
2L	9804413	2L_9804413_SNP [dm3] 2L_9804413_SNP [dm6]	G	A	6.951e^-5	0.491	INTRON nAChRalpha6
3R	5428329	3R_5428329_SNP [dm3] 3R_9602607_SNP [dm6]	G	A	6.960e^-5	0.491	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11138843	2R_11138843_SNP [dm3] 2R_15251338_SNP [dm6]	A	G	7.050e^-5	0.494	INTRON scb	TF binding site mE1_TFBS_cad
2L	15377507	2L_15377507_SNP [dm3] 2L_15377507_SNP [dm6]	C	T	7.081e^-5	0.494	INTERGENIC
2L	16540542	2L_16540542_SNP [dm3] 2L_16540542_SNP [dm6]	T	A	7.105e^-5	0.494	INTERGENIC
2L	16540543	2L_16540543_SNP [dm3] 2L_16540543_SNP [dm6]	G	C	7.105e^-5	0.494	INTERGENIC
2L	16540512	2L_16540512_SNP [dm3] 2L_16540512_SNP [dm6]	T	A	7.161e^-5	0.494	INTERGENIC
3R	21146263	3R_21146263_SNP [dm3] 3R_25320541_SNP [dm6]	T	A	7.164e^-5	0.494	UPSTREAM CG10560 DOWNSTREAM CG10562 INTERGENIC
2L	3477564	2L_3477564_SNP [dm3] 2L_3477564_SNP [dm6]	T	C	7.211e^-5	0.495	UPSTREAM Thor EXON CR43928	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14503318	3R_14503318_SNP [dm3] 3R_18677596_SNP [dm6]	G	C	7.279e^-5	0.497	UPSTREAM CG7706 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	1491483	3L_1491483_SNP [dm3] 3L_1491483_SNP [dm6]	T	G	7.290e^-5	0.497	UTR_3_PRIME CG12084
2R	10190042	2R_10190042_SNP [dm3] 2R_14302537_SNP [dm6]	G	A	7.312e^-5	0.497	UPSTREAM tej INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8146210	3R_8146210_DEL [dm3] 3R_12320488_DEL [dm6]	TT	T	7.336e^-5	0.497	INTERGENIC
3L	10167431	3L_10167431_SNP [dm3] 3L_10174331_SNP [dm6]	T	A	7.448e^-5	0.497	INTRON dpr10
3L	19962531	3L_19962531_SNP [dm3] 3L_19969431_SNP [dm6]	G	A	7.486e^-5	0.497	INTRON Ac76E
2L	7077576	2L_7077576_SNP [dm3] 2L_7077576_SNP [dm6]	T	C	7.582e^-5	0.497	INTRON Pvf2
2L	11193602	2L_11193602_SNP [dm3] 2L_11193602_SNP [dm6]	T	G	7.591e^-5	0.497	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da
X	17606069	X_17606069_SNP [dm3] X_17712036_SNP [dm6]	A	G	7.596e^-5	0.497	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12296116	2L_12296116_SNP [dm3] 2L_12296116_SNP [dm6]	C	A	7.597e^-5	0.497	INTRON aret
X	7064214	X_7064214_INS [dm3] X_7170181_INS [dm6]	G	GGAGAAGGAAAGG...	7.613e^-5	0.497	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8501625	3R_8501625_SNP [dm3] 3R_12675903_SNP [dm6]	C	T	7.628e^-5	0.497	SYNONYMOUS_CODING CG6188 DOWNSTREAM CG43630 & 1 other	TF binding site mE1_TFBS_cad
3L	10001540	3L_10001540_SNP [dm3] 3L_10008440_SNP [dm6]	G	C	7.631e^-5	0.497	INTRON dpr6
3L	703242	3L_703242_SNP [dm3] 3L_703242_SNP [dm6]	A	G	7.724e^-5	0.497	INTERGENIC
3R	10037642	3R_10037642_SNP [dm3] 3R_14211920_SNP [dm6]	G	A	7.745e^-5	0.497	INTRON Dop1R1
2R	7452430	2R_7452430_DEL [dm3] 2R_11564925_DEL [dm6]	GCCG	G	7.752e^-5	0.497	INTERGENIC
X	7238400	X_7238400_SNP [dm3] X_7344367_SNP [dm6]	T	G	7.816e^-5	0.497	INTRON CR44357 & 1 other
X	9093545	X_9093545_SNP [dm3] X_9199512_SNP [dm6]	G	A	7.817e^-5	0.497	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18437125	3R_18437125_SNP [dm3] 3R_22611403_SNP [dm6]	C	T	7.830e^-5	0.497	SYNONYMOUS_CODING CG31156 DOWNSTREAM CG13843
3R	8047299	3R_8047299_SNP [dm3] 3R_12221577_SNP [dm6]	A	G	7.915e^-5	0.497	UPSTREAM CG10014 & 1 other INTERGENIC
3R	8341839	3R_8341839_DEL [dm3] 3R_12516117_DEL [dm6]	AGGAACTTAAATACACAATT...	A	7.979e^-5	0.497	INTRON Octbeta3R
2L	11442926	2L_11442926_SNP [dm3] 2L_11442926_SNP [dm6]	C	G	7.990e^-5	0.497	INTRON salm
X	8208710	X_8208710_SNP [dm3] X_8314677_SNP [dm6]	A	C	7.993e^-5	0.497	INTRON nAChRalpha3
2L	16540548	2L_16540548_INS [dm3] 2L_16540548_INS [dm6]	A	AGT	8.039e^-5	0.497	INTERGENIC
X	17600930	X_17600930_SNP [dm3] X_17706897_SNP [dm6]	A	C	8.051e^-5	0.497	UTR_3_PRIME par-6 DOWNSTREAM CG8173 & 1 other
X	20149025	X_20149025_SNP [dm3] X_20277999_SNP [dm6]	G	A	8.057e^-5	0.497	INTERGENIC	insulator Insulator_Class_II.mE01
2L	9734145	2L_9734145_SNP [dm3] 2L_9734145_SNP [dm6]	A	T	8.128e^-5	0.497	INTRON Nckx30C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14222976	2R_14222976_SNP [dm3] 2R_18335471_SNP [dm6]	C	A	8.131e^-5	0.497	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	17370635	3L_17370635_SNP [dm3] 3L_17377535_SNP [dm6]	G	T	8.146e^-5	0.497	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	2197957	3L_2197957_SNP [dm3] 3L_2197957_SNP [dm6]	A	G	8.148e^-5	0.497	UTR_3_PRIME CG8960	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2197959	3L_2197959_DEL [dm3] 3L_2197959_DEL [dm6]	AGC	A	8.148e^-5	0.497	UTR_3_PRIME CG8960	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9607530	3L_9607530_SNP [dm3] 3L_9614430_SNP [dm6]	T	G	8.189e^-5	0.497	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	18598734	2R_18598734_SNP [dm3] 2R_22711229_SNP [dm6]	A	G	8.267e^-5	0.497	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
3R	5428755	3R_5428755_SNP [dm3] 3R_9603033_SNP [dm6]	T	C	8.297e^-5	0.497	INTRON CG8312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5113639	X_5113639_SNP [dm3] X_5219606_SNP [dm6]	C	T	8.298e^-5	0.497	INTRON CG15465 & 1 other
3R	2245193	3R_2245193_SNP [dm3] 3R_6419471_SNP [dm6]	T	C	8.299e^-5	0.497	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18988523	X_18988523_SNP [dm3] X_19094490_SNP [dm6]	A	G	8.340e^-5	0.497	INTERGENIC
3L	10394669	3L_10394669_SNP [dm3] 3L_10401569_SNP [dm6]	G	A	8.344e^-5	0.497	INTERGENIC
3R	8347006	3R_8347006_SNP [dm3] 3R_12521284_SNP [dm6]	T	A	8.376e^-5	0.497	INTRON Octbeta3R	TF binding site mE1_TFBS_cad
2L	6712637	2L_6712637_SNP [dm3] 2L_6712637_SNP [dm6]	C	T	8.384e^-5	0.497	SYNONYMOUS_CODING AkhR	TF binding site mE1_TFBS_chinmo
3R	7167228	3R_7167228_SNP [dm3] 3R_11341506_SNP [dm6]	A	G	8.401e^-5	0.497	INTRON pros
3L	5944569	3L_5944569_SNP [dm3] 3L_5951469_SNP [dm6]	A	C	8.413e^-5	0.497	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	8346482	3R_8346482_SNP [dm3] 3R_12520760_SNP [dm6]	C	T	8.446e^-5	0.497	INTRON Octbeta3R
2L	14054019	2L_14054019_SNP [dm3] 2L_14054019_SNP [dm6]	T	C	8.468e^-5	0.497	INTRON nAChRalpha5	TF binding site mE1_TFBS_Trl
3R	10296407	3R_10296407_SNP [dm3] 3R_14470685_SNP [dm6]	C	A	8.494e^-5	0.497	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16540544	2L_16540544_INS [dm3] 2L_16540544_INS [dm6]	T	TTGAATACTTAA...	8.552e^-5	0.497	INTERGENIC
2R	11138824	2R_11138824_SNP [dm3] 2R_15251319_SNP [dm6]	G	T	8.580e^-5	0.497	INTRON scb	TF binding site mE1_TFBS_cad
2R	5049532	2R_5049532_DEL [dm3] 2R_9162027_DEL [dm6]	CGCTATAATTATAATGGTAT...	C	8.609e^-5	0.497	UTR_3_PRIME CG8046 UPSTREAM CG8008 DOWNSTREAM CG8046 & 1 other INTRAGENIC CG8046 INTERGENIC
3L	9607020	3L_9607020_SNP [dm3] 3L_9613920_SNP [dm6]	G	C	8.637e^-5	0.497	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16013259	2L_16013259_SNP [dm3] 2L_16013259_SNP [dm6]	T	G	8.662e^-5	0.497	INTRON beat-Ic
2R	15270616	2R_15270616_SNP [dm3] 2R_19383111_SNP [dm6]	G	A	8.692e^-5	0.497	SYNONYMOUS_CODING CG10073
X	17599853	X_17599853_SNP [dm3] X_17705820_SNP [dm6]	G	A	8.718e^-5	0.497	UTR_3_PRIME par-6
3R	9926813	3R_9926813_SNP [dm3] 3R_14101091_SNP [dm6]	C	A	8.733e^-5	0.497	INTRON PK1-R
3R	13676836	3R_13676836_SNP [dm3] 3R_17851114_SNP [dm6]	G	A	8.744e^-5	0.497	INTRON tinc
2L	13108885	2L_13108885_SNP [dm3] 2L_13108885_SNP [dm6]	T	G	8.776e^-5	0.497	INTRON CG5142
3R	14102313	3R_14102313_SNP [dm3] 3R_18276591_SNP [dm6]	T	A	8.782e^-5	0.497	INTRON eIF-1A	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	8.908e^-5	0.497	INTRON Ca-beta
3R	3383508	3R_3383508_SNP [dm3] 3R_7557786_SNP [dm6]	C	T	8.944e^-5	0.497	INTERGENIC
3R	12859812	3R_12859812_SNP [dm3] 3R_17034090_SNP [dm6]	A	T	9.003e^-5	0.497	DOWNSTREAM CG31268 INTRON CG4009	TF binding site mE1_TFBS_HSA
X	7242590	X_7242590_SNP [dm3] X_7348557_SNP [dm6]	A	G	9.003e^-5	0.497	INTRON CR44357 & 1 other
2L	2940069	2L_2940069_SNP [dm3] 2L_2940069_SNP [dm6]	C	T	9.029e^-5	0.497	INTRON lilli
3L	9607244	3L_9607244_SNP [dm3] 3L_9614144_SNP [dm6]	T	C	9.050e^-5	0.497	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	13532728	2R_13532728_SNP [dm3] 2R_17645223_SNP [dm6]	C	T	9.082e^-5	0.497	INTERGENIC
2R	14529911	2R_14529911_SNP [dm3] 2R_18642406_SNP [dm6]	G	A	9.100e^-5	0.497	SPLICE_SITE_REGION SP2637 SYNONYMOUS_CODING SP2637	TF binding site mE1_TFBS_cad
X	17608030	X_17608030_SNP [dm3] X_17713997_SNP [dm6]	T	C	9.153e^-5	0.497	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	10159546	3R_10159546_SNP [dm3] 3R_14333824_SNP [dm6]	A	C	9.157e^-5	0.497	INTRON NK7.1
2R	10184380	2R_10184380_SNP [dm3] 2R_14296875_SNP [dm6]	C	T	9.157e^-5	0.497	INTRON Ih	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	9.207e^-5	0.497	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23335839	3R_23335839_SNP [dm3] 3R_27510117_SNP [dm6]	T	A	9.209e^-5	0.497	INTERGENIC
2R	14221583	2R_14221583_SNP [dm3] 2R_18334078_SNP [dm6]	C	T	9.279e^-5	0.497	INTRON sbb
X	17599834	X_17599834_SNP [dm3] X_17705801_SNP [dm6]	A	G	9.281e^-5	0.497	UTR_3_PRIME par-6
2R	18110805	2R_18110805_SNP [dm3] 2R_22223300_SNP [dm6]	C	G	9.311e^-5	0.497	DOWNSTREAM Oatp58Dc INTRON Oatp58Db	TF binding site mE1_TFBS_sens
2L	16260345	2L_16260345_SNP [dm3] 2L_16260345_SNP [dm6]	A	G	9.350e^-5	0.497	SYNONYMOUS_CODING twe DOWNSTREAM EndoGI	TF binding site mE1_TFBS_cad
2L	5538348	2L_5538348_SNP [dm3] 2L_5538348_SNP [dm6]	A	C	9.376e^-5	0.497	SYNONYMOUS_CODING CG14015 DOWNSTREAM Hel25E	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	8346782	3R_8346782_SNP [dm3] 3R_12521060_SNP [dm6]	T	C	9.393e^-5	0.497	INTRON Octbeta3R
3L	17232246	3L_17232246_SNP [dm3] 3L_17239146_SNP [dm6]	G	A	9.412e^-5	0.497	NON_SYNONYMOUS_CODING CG6512 UPSTREAM Rbp6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	3398061	2L_3398061_SNP [dm3] 2L_3398061_SNP [dm6]	A	T	9.416e^-5	0.497	START_GAINED CG34175 UTR_5_PRIME CG34175 UPSTREAM CR44792
X	7064217	X_7064217_INS [dm3] X_7170184_INS [dm6]	T	TA	9.452e^-5	0.497	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13083893	X_13083893_SNP [dm3] X_13189860_SNP [dm6]	A	G	9.473e^-5	0.497	SYNONYMOUS_CODING CG12723 UPSTREAM CG34411	TF binding site mE1_TFBS_chinmo
2R	5114030	2R_5114030_SNP [dm3] 2R_9226525_SNP [dm6]	G	A	9.512e^-5	0.497	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11468264	2L_11468264_SNP [dm3] 2L_11468264_SNP [dm6]	A	G	9.537e^-5	0.497	INTERGENIC
3R	9654654	3R_9654654_SNP [dm3] 3R_13828932_SNP [dm6]	T	A	9.542e^-5	0.497	UPSTREAM Mst87F DOWNSTREAM CR43300 INTERGENIC
3R	9962352	3R_9962352_SNP [dm3] 3R_14136630_SNP [dm6]	G	A	9.563e^-5	0.497	INTERGENIC
X	18345931	X_18345931_DEL [dm3] X_18451898_DEL [dm6]	TCCATTT	T	9.597e^-5	0.497	INTRON CG32547
2L	15403367	2L_15403367_SNP [dm3] 2L_15403367_SNP [dm6]	A	G	9.678e^-5	0.497	INTERGENIC
2R	13752368	2R_13752368_SNP [dm3] 2R_17864863_SNP [dm6]	G	A	9.693e^-5	0.497	SYNONYMOUS_CODING thr	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
2R	17259925	2R_17259925_SNP [dm3] 2R_21372420_SNP [dm6]	G	T	9.717e^-5	0.497	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7239079	2L_7239079_SNP [dm3] 2L_7239079_SNP [dm6]	G	A	9.718e^-5	0.497	INTRON Ndae1
3R	9613891	3R_9613891_SNP [dm3] 3R_13788169_SNP [dm6]	T	A	9.739e^-5	0.497	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16540519	2L_16540519_SNP [dm3] 2L_16540519_SNP [dm6]	A	G	9.753e^-5	0.497	INTERGENIC
3R	11852918	3R_11852918_SNP [dm3] 3R_16027196_SNP [dm6]	T	A	9.773e^-5	0.497	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	16540503	2L_16540503_SNP [dm3] 2L_16540503_SNP [dm6]	G	C	9.774e^-5	0.497	INTERGENIC
2L	620686	2L_620686_SNP [dm3] 2L_620686_SNP [dm6]	G	A	9.781e^-5	0.497	NON_SYNONYMOUS_CODING lectin-21Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13082859	X_13082859_INS [dm3] X_13188826_INS [dm6]	G	AA	9.814e^-5	0.497	UTR_5_PRIME CG34411 DOWNSTREAM CG12723 INTRON CG34411	TF binding site BDTNP1_TFBS_twi
X	7244375	X_7244375_SNP [dm3] X_7350342_SNP [dm6]	T	C	9.840e^-5	0.497	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6589159	3L_6589159_SNP [dm3] 3L_6596059_SNP [dm6]	C	G	9.842e^-5	0.497	SYNONYMOUS_CODING ndl
2L	17549775	2L_17549775_SNP [dm3] 2L_17549775_SNP [dm6]	C	T	9.864e^-5	0.497	INTERGENIC
3R	23538629	3R_23538629_DEL [dm3] 3R_27712907_DEL [dm6]	CTCCC	C	9.868e^-5	0.497	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4521821	3L_4521821_SNP [dm3] 3L_4521821_SNP [dm6]	G	A	9.904e^-5	0.497	INTRON Tie
3L	14842658	3L_14842658_SNP [dm3] 3L_14849558_SNP [dm6]	G	A	9.911e^-5	0.497	INTRON CG17839
3R	11184188	3R_11184188_SNP [dm3] 3R_15358466_SNP [dm6]	C	T	9.922e^-5	0.497	DOWNSTREAM ldlCp INTRON CG5044
2L	11441890	2L_11441890_DEL [dm3] 2L_11441890_DEL [dm6]	TGGATTT	T	9.946e^-5	0.497	INTRON salm	TF binding site mE1_TFBS_inv
3L	19960155	3L_19960155_SNP [dm3] 3L_19967055_SNP [dm6]	G	A	9.988e^-5	0.498	INTRON Ac76E
3R	8246176	3R_8246176_SNP [dm3] 3R_12420454_SNP [dm6]	A	T	1.002e^-4	0.498	DOWNSTREAM Scgbeta INTRON pps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	22115699	3R_22115699_SNP [dm3] 3R_26289977_SNP [dm6]	A	G	1.003e^-4	0.498	INTERGENIC
3L	17373269	3L_17373269_SNP [dm3] 3L_17380169_SNP [dm6]	G	A	1.006e^-4	0.498	UTR_3_PRIME CG13728 UPSTREAM Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	6093919	3L_6093919_SNP [dm3] 3L_6100819_SNP [dm6]	T	C	1.012e^-4	0.498	INTRON Ets65A
3L	6093921	3L_6093921_SNP [dm3] 3L_6100821_SNP [dm6]	A	G	1.020e^-4	0.498	INTRON Ets65A
3R	10158165	3R_10158165_SNP [dm3] 3R_14332443_SNP [dm6]	G	C	1.023e^-4	0.498	INTRON NK7.1
X	17904804	X_17904804_SNP [dm3] X_18010771_SNP [dm6]	A	G	1.023e^-4	0.498	INTRON Sh
3R	2781599	3R_2781599_SNP [dm3] 3R_6955877_SNP [dm6]	T	G	1.026e^-4	0.498	INTRON Antp
X	7242610	X_7242610_SNP [dm3] X_7348577_SNP [dm6]	G	T	1.033e^-4	0.498	INTRON CR44357 & 1 other
3L	4959820	3L_4959820_SNP [dm3] 3L_4959820_SNP [dm6]	T	C	1.033e^-4	0.498	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18595500	2R_18595500_SNP [dm3] 2R_22707995_SNP [dm6]	T	C	1.035e^-4	0.498	NON_SYNONYMOUS_CODING CG30275 DOWNSTREAM Obp58d EXON CR43735
3R	22115690	3R_22115690_SNP [dm3] 3R_26289968_SNP [dm6]	T	A	1.035e^-4	0.498	INTERGENIC
2L	3232648	2L_3232648_SNP [dm3] 2L_3232648_SNP [dm6]	G	A	1.035e^-4	0.498	INTERGENIC
3L	9948425	3L_9948425_SNP [dm3] 3L_9955325_SNP [dm6]	A	G	1.038e^-4	0.498	INTRON CG34356
2R	12332605	2R_12332605_SNP [dm3] 2R_16445100_SNP [dm6]	A	G	1.039e^-4	0.498	UPSTREAM CG15925 DOWNSTREAM CG4409 INTERGENIC
X	2996995	X_2996995_SNP [dm3] X_3102962_SNP [dm6]	A	G	1.045e^-4	0.5	INTRON kirre
3R	11265203	3R_11265203_SNP [dm3] 3R_15439481_SNP [dm6]	T	C	1.050e^-4	0.5	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
3R	13916678	3R_13916678_SNP [dm3] 3R_18090956_SNP [dm6]	T	C	1.055e^-4	0.5	UTR_5_PRIME sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14362981	2R_14362981_SNP [dm3] 2R_18475476_SNP [dm6]	A	G	1.057e^-4	0.5	INTRON CG30116
3R	8268744	3R_8268744_SNP [dm3] 3R_12443022_SNP [dm6]	G	A	1.060e^-4	0.5	UPSTREAM Desat1 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9538823	3R_9538823_SNP [dm3] 3R_13713101_SNP [dm6]	C	A	1.061e^-4	0.5	EXON CR34044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1797310	3R_1797310_INS [dm3] 3R_5971588_INS [dm6]	T	TT	1.062e^-4	0.5	DOWNSTREAM CR44926 & 1 other INTERGENIC
X	17600663	X_17600663_SNP [dm3] X_17706630_SNP [dm6]	A	T	1.063e^-4	0.5	UTR_3_PRIME par-6 DOWNSTREAM CG8173 & 1 other
2L	14872535	2L_14872535_SNP [dm3] 2L_14872535_SNP [dm6]	C	T	1.068e^-4	0.5	UPSTREAM CG4480 INTERGENIC
2L	11471429	2L_11471429_SNP [dm3] 2L_11471429_SNP [dm6]	C	G	1.069e^-4	0.5	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10037587	3R_10037587_SNP [dm3] 3R_14211865_SNP [dm6]	C	A	1.073e^-4	0.5	INTRON Dop1R1
3L	11253518	3L_11253518_SNP [dm3] 3L_11260418_SNP [dm6]	A	G	1.080e^-4	0.5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	12247082	3L_12247082_SNP [dm3] 3L_12253982_SNP [dm6]	C	A	1.081e^-4	0.5	INTRON app
X	7242578	X_7242578_SNP [dm3] X_7348545_SNP [dm6]	A	G	1.086e^-4	0.5	INTRON CR44357 & 1 other
3R	15332848	3R_15332848_DEL [dm3] 3R_19507126_DEL [dm6]	GCTG	G	1.088e^-4	0.5	INTRON Dys
3R	8341740	3R_8341740_SNP [dm3] 3R_12516018_SNP [dm6]	A	G	1.091e^-4	0.5	INTRON Octbeta3R
3L	12683852	3L_12683852_SNP [dm3] 3L_12690752_SNP [dm6]	T	G	1.093e^-4	0.5	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16508069	2L_16508069_SNP [dm3] 2L_16508069_SNP [dm6]	A	G	1.094e^-4	0.5	DOWNSTREAM CG5953 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8427306	3R_8427306_SNP [dm3] 3R_12601584_SNP [dm6]	G	T	1.098e^-4	0.5	INTERGENIC
2R	18810179	2R_18810179_SNP [dm3] 2R_22922656_SNP [dm6]	T	G	1.101e^-4	0.5	NON_SYNONYMOUS_CODING Nup214
3L	16929536	3L_16929536_SNP [dm3] 3L_16936436_SNP [dm6]	A	G	1.106e^-4	0.5	UPSTREAM CG11905 INTERGENIC
3R	13148271	3R_13148271_SNP [dm3] 3R_17322549_SNP [dm6]	T	A	1.106e^-4	0.5	INTRON beat-IIa
3R	20883899	3R_20883899_SNP [dm3] 3R_25058177_SNP [dm6]	A	G	1.106e^-4	0.5	UPSTREAM Unc-13-4B INTRON Unc-13-4B
X	8635052	X_8635052_DEL [dm3] X_8741019_DEL [dm6]	TTGTGTGCAATTTT...	T	1.107e^-4	0.5	INTERGENIC
2L	2665905	2L_2665905_SNP [dm3] 2L_2665905_SNP [dm6]	G	C	1.113e^-4	0.501	NON_SYNONYMOUS_CODING CG9879
2L	11441568	2L_11441568_SNP [dm3] 2L_11441568_SNP [dm6]	G	A	1.115e^-4	0.501	INTRON salm	TF binding site mE1_TFBS_inv
2R	17686907	2R_17686907_SNP [dm3] 2R_21799402_SNP [dm6]	C	T	1.120e^-4	0.502	UTR_3_PRIME CG4386 UPSTREAM CG18735
3R	12873560	3R_12873560_SNP [dm3] 3R_17047838_SNP [dm6]	C	T	1.124e^-4	0.503	UTR_3_PRIME Patr-1 DOWNSTREAM Patr-1	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	11455136	2L_11455136_DEL [dm3] 2L_11455136_DEL [dm6]	TT	T	1.126e^-4	0.503	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2619660	3L_2619660_SNP [dm3] 3L_2619660_SNP [dm6]	T	A	1.133e^-4	0.504	INTRON Pxn
3L	4642128	3L_4642128_SNP [dm3] 3L_4642128_SNP [dm6]	C	T	1.144e^-4	0.504	DOWNSTREAM axo INTRON axo
3L	4642150	3L_4642150_SNP [dm3] 3L_4642150_SNP [dm6]	A	T	1.144e^-4	0.504	DOWNSTREAM axo INTRON axo
3L	9410622	3L_9410622_SNP [dm3] 3L_9417522_SNP [dm6]	G	A	1.145e^-4	0.504	UPSTREAM CG3982 INTRON CG3967
2R	14223995	2R_14223995_SNP [dm3] 2R_18336490_SNP [dm6]	G	A	1.148e^-4	0.504	INTRON sbb
3L	11893038	3L_11893038_SNP [dm3] 3L_11899938_SNP [dm6]	C	T	1.150e^-4	0.504	INTRON CG44837 EXON CR43624
2L	12656773	2L_12656773_SNP [dm3] 2L_12656773_SNP [dm6]	T	A	1.153e^-4	0.504	UPSTREAM pdm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1234524	3L_1234524_SNP [dm3] 3L_1234524_SNP [dm6]	A	T	1.154e^-4	0.504	UPSTREAM CR45747 DOWNSTREAM CG33965 INTRON CG33966
X	11776238	X_11776238_SNP [dm3] X_11882205_SNP [dm6]	T	C	1.160e^-4	0.504	INTRON CG10353
3R	2830484	3R_2830484_SNP [dm3] 3R_7004762_SNP [dm6]	C	T	1.165e^-4	0.504	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9915991	3L_9915991_SNP [dm3] 3L_9922891_SNP [dm6]	C	T	1.166e^-4	0.504	INTRON CG34356
2L	14999845	2L_14999845_INS [dm3] 2L_14999845_INS [dm6]	A	AG	1.167e^-4	0.504	INTERGENIC
3L	5955750	3L_5955750_SNP [dm3] 3L_5962650_SNP [dm6]	T	A	1.172e^-4	0.504	INTERGENIC
3R	15519996	3R_15519996_SNP [dm3] 3R_19694274_SNP [dm6]	C	T	1.173e^-4	0.504	INTRON Naam
3L	10980706	3L_10980706_SNP [dm3] 3L_10987606_SNP [dm6]	T	A	1.176e^-4	0.504	INTRON klu
2L	16726544	2L_16726544_SNP [dm3] 2L_16726544_SNP [dm6]	A	T	1.176e^-4	0.504	INTRON VhaSFD
2L	19437195	2L_19437195_SNP [dm3] 2L_19437195_SNP [dm6]	C	A	1.178e^-4	0.504	INTRON CG10237
X	18446556	X_18446556_SNP [dm3] X_18552523_SNP [dm6]	G	C	1.180e^-4	0.504	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14976380	2L_14976380_SNP [dm3] 2L_14976380_SNP [dm6]	A	G	1.183e^-4	0.504	INTRON mol
3L	17286924	3L_17286924_SNP [dm3] 3L_17293824_SNP [dm6]	A	T	1.190e^-4	0.504	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17606534	X_17606534_SNP [dm3] X_17712501_SNP [dm6]	A	G	1.191e^-4	0.504	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	18606809	3L_18606809_SNP [dm3] 3L_18613709_SNP [dm6]	G	A	1.196e^-4	0.504	NON_SYNONYMOUS_CODING CG32199 INTRON CG4174 & 1 other
X	17601054	X_17601054_SNP [dm3] X_17707021_SNP [dm6]	C	T	1.199e^-4	0.504	UTR_3_PRIME par-6 DOWNSTREAM CG8173 & 1 other
3R	12712308	3R_12712308_SNP [dm3] 3R_16886586_SNP [dm6]	T	G	1.202e^-4	0.504	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	8342003	3R_8342003_SNP [dm3] 3R_12516281_SNP [dm6]	G	A	1.203e^-4	0.504	INTRON Octbeta3R	TF binding site mE1_TFBS_cad
2L	14972582	2L_14972582_SNP [dm3] 2L_14972582_SNP [dm6]	C	A	1.204e^-4	0.504	UPSTREAM CG42313 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	6817016	2L_6817016_SNP [dm3] 2L_6817016_SNP [dm6]	T	G	1.209e^-4	0.504	INTERGENIC
X	17859204	X_17859204_SNP [dm3] X_17965171_SNP [dm6]	T	A	1.210e^-4	0.504	INTRON Sh
3L	12247700	3L_12247700_SNP [dm3] 3L_12254600_SNP [dm6]	G	A	1.212e^-4	0.504	INTRON app
3L	12631237	3L_12631237_SNP [dm3] 3L_12638137_SNP [dm6]	G	T	1.214e^-4	0.504	INTRON CR32111
3L	4642127	3L_4642127_SNP [dm3] 3L_4642127_SNP [dm6]	G	T	1.215e^-4	0.504	DOWNSTREAM axo INTRON axo
2R	18809727	2R_18809727_SNP [dm3] 2R_22922204_SNP [dm6]	C	T	1.224e^-4	0.504	SYNONYMOUS_CODING Nup214
3L	758694	3L_758694_SNP [dm3] 3L_758694_SNP [dm6]	A	G	1.230e^-4	0.504	INTERGENIC
3R	1065952	3R_1065952_SNP [dm3] 3R_5240230_SNP [dm6]	G	T	1.230e^-4	0.504	UTR_3_PRIME CG33293 INTRON CG12163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12344688	3L_12344688_SNP [dm3] 3L_12351588_SNP [dm6]	T	G	1.231e^-4	0.504	UPSTREAM CrzR INTERGENIC
2R	14926546	2R_14926546_SNP [dm3] 2R_19039041_SNP [dm6]	G	C	1.231e^-4	0.504	INTERGENIC
2L	7923827	2L_7923827_SNP [dm3] 2L_7923827_SNP [dm6]	C	G	1.236e^-4	0.504	INTRON Snoo
3L	19967126	3L_19967126_DEL [dm3] 3L_19974026_DEL [dm6]	TATCTAATGTTGAA...	T	1.236e^-4	0.504	INTRON Ac76E
2L	13208396	2L_13208396_SNP [dm3] 2L_13208396_SNP [dm6]	C	T	1.249e^-4	0.504	INTRON Pect
3R	5434177	3R_5434177_SNP [dm3] 3R_9608455_SNP [dm6]	T	C	1.251e^-4	0.504	INTRON CG8312	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3L	17163316	3L_17163316_SNP [dm3] 3L_17170216_SNP [dm6]	C	A	1.253e^-4	0.504	INTRON Rbp6
3R	8361127	3R_8361127_SNP [dm3] 3R_12535405_SNP [dm6]	A	G	1.253e^-4	0.504	INTRON Octbeta3R
3L	2198332	3L_2198332_DEL [dm3] 3L_2198332_DEL [dm6]	CTGATCGCGTGGGTGTTGCA...	C	1.256e^-4	0.504	DOWNSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10186956	3R_10186956_SNP [dm3] 3R_14361234_SNP [dm6]	T	A	1.257e^-4	0.504	UTR_5_PRIME CG31320 INTRON NK7.1
3L	12465616	3L_12465616_SNP [dm3] 3L_12472516_SNP [dm6]	T	A	1.260e^-4	0.504	INTRON CG10616
3L	6093977	3L_6093977_SNP [dm3] 3L_6100877_SNP [dm6]	G	T	1.261e^-4	0.504	INTRON Ets65A
3L	12465470	3L_12465470_DEL [dm3] 3L_12472370_DEL [dm6]	TGTTTA	T	1.262e^-4	0.504	INTRON CG10616	TF binding site mE1_TFBS_cad
2L	10584796	2L_10584796_SNP [dm3] 2L_10584796_SNP [dm6]	A	G	1.262e^-4	0.504	INTRON Trim9
3L	3271323	3L_3271323_SNP [dm3] 3L_3271323_SNP [dm6]	C	G	1.267e^-4	0.504	INTRON CG14960
3L	3273667	3L_3273667_SNP [dm3] 3L_3273667_SNP [dm6]	A	C	1.267e^-4	0.504	INTRON CG14960
X	16223674	X_16223674_SNP [dm3] X_16329641_SNP [dm6]	G	A	1.270e^-4	0.504	SYNONYMOUS_CODING CG9919	TF binding site mE1_TFBS_HSA
2R	10166974	2R_10166974_SNP [dm3] 2R_14279469_SNP [dm6]	C	T	1.271e^-4	0.504	UTR_5_PRIME Ih
3L	17382230	3L_17382230_SNP [dm3] 3L_17389130_SNP [dm6]	T	C	1.272e^-4	0.504	UPSTREAM CG13731 INTERGENIC
3L	20857887	3L_20857887_SNP [dm3] 3L_20864787_SNP [dm6]	A	T	1.280e^-4	0.506	INTRON CG32432
X	17599245	X_17599245_SNP [dm3] X_17705212_SNP [dm6]	C	A	1.284e^-4	0.507	SYNONYMOUS_CODING par-6	TF binding site mE1_TFBS_sens
2L	16459622	2L_16459622_SNP [dm3] 2L_16459622_SNP [dm6]	G	A	1.289e^-4	0.507	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	13713600	2R_13713600_SNP [dm3] 2R_17826095_SNP [dm6]	A	G	1.290e^-4	0.507	INTRON grh	transposable element FlyBase
2R	14685527	2R_14685527_SNP [dm3] 2R_18798022_SNP [dm6]	T	C	1.296e^-4	0.507	SYNONYMOUS_CODING l_2_08717	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8208678	3R_8208678_SNP [dm3] 3R_12382956_SNP [dm6]	G	C	1.299e^-4	0.507	UPSTREAM GstD11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16540599	2L_16540599_SNP [dm3] 2L_16540599_SNP [dm6]	A	T	1.301e^-4	0.507	INTERGENIC
2R	17017683	2R_17017683_SNP [dm3] 2R_21130178_SNP [dm6]	A	G	1.303e^-4	0.507	SYNONYMOUS_CODING Magi DOWNSTREAM mago	TF binding site mE1_TFBS_sens
3R	21145846	3R_21145846_SNP [dm3] 3R_25320124_SNP [dm6]	A	T	1.304e^-4	0.507	UPSTREAM CG10560 DOWNSTREAM CG10562 INTERGENIC
2L	12579590	2L_12579590_SNP [dm3] 2L_12579590_SNP [dm6]	G	T	1.311e^-4	0.508	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	2278744	3L_2278744_SNP [dm3] 3L_2278744_SNP [dm6]	C	T	1.317e^-4	0.508	DOWNSTREAM yellow-g2 INTERGENIC	TF binding site mE1_TFBS_inv
2R	11819648	2R_11819648_SNP [dm3] 2R_15932143_SNP [dm6]	T	C	1.318e^-4	0.508	UPSTREAM bdg DOWNSTREAM Iap2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	16205964	3L_16205964_DEL [dm3] 3L_16212864_DEL [dm6]	CATAATAGAACATCGTTATA...	C	1.318e^-4	0.508	DOWNSTREAM CG13073 INTERGENIC	TF binding site mE1_TFBS_Stat92E
2R	17405949	2R_17405949_SNP [dm3] 2R_21518444_SNP [dm6]	C	T	1.321e^-4	0.508	DOWNSTREAM CG30288 INTRON CG10494	TF binding site mE1_TFBS_sens
X	5971657	X_5971657_SNP [dm3] X_6077624_SNP [dm6]	T	C	1.329e^-4	0.508	UTR_5_PRIME CG4666 UPSTREAM CG4666
3R	2252603	3R_2252603_SNP [dm3] 3R_6426881_SNP [dm6]	T	C	1.329e^-4	0.508	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16540546	2L_16540546_SNP [dm3] 2L_16540546_SNP [dm6]	C	G	1.329e^-4	0.508	INTERGENIC
3L	15884673	3L_15884673_SNP [dm3] 3L_15891573_SNP [dm6]	G	C	1.330e^-4	0.508	INTRON pHCl
2L	11463278	2L_11463278_SNP [dm3] 2L_11463278_SNP [dm6]	A	C	1.346e^-4	0.513	INTERGENIC	TF binding site mE1_TFBS_cad
3L	3054047	3L_3054047_SNP [dm3] 3L_3054047_SNP [dm6]	T	C	1.350e^-4	0.513	SYNONYMOUS_CODING CG1271	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14854111	2L_14854111_SNP [dm3] 2L_14854111_SNP [dm6]	G	T	1.352e^-4	0.513	INTERGENIC
3R	25287963	3R_25287963_SNP [dm3] 3R_29462241_SNP [dm6]	A	G	1.353e^-4	0.513	SYNONYMOUS_CODING Ptp99A INTRON Ptp99A	TF binding site mE1_TFBS_chinmo
X	2552245	X_2552245_SNP [dm3] X_2658212_SNP [dm6]	G	A	1.360e^-4	0.514	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16541418	2L_16541418_SNP [dm3] 2L_16541418_SNP [dm6]	G	T	1.363e^-4	0.514	INTERGENIC
2L	15403373	2L_15403373_SNP [dm3] 2L_15403373_SNP [dm6]	T	G	1.370e^-4	0.516	INTERGENIC
2L	14872547	2L_14872547_SNP [dm3] 2L_14872547_SNP [dm6]	T	A	1.374e^-4	0.516	UPSTREAM CG4480 INTERGENIC
2R	18205971	2R_18205971_SNP [dm3] 2R_22318466_SNP [dm6]	C	A	1.375e^-4	0.516	UTR_5_PRIME Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1028080	3L_1028080_SNP [dm3] 3L_1028080_SNP [dm6]	C	T	1.400e^-4	0.519	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7923833	2L_7923833_INS [dm3] 2L_7923833_INS [dm6]	A	AACTTTATA	1.401e^-4	0.519	INTRON Snoo
2L	17600886	2L_17600886_SNP [dm3] 2L_17600886_SNP [dm6]	A	G	1.405e^-4	0.519	INTRON Sytalpha
3R	23657586	3R_23657586_SNP [dm3] 3R_27831864_SNP [dm6]	T	G	1.409e^-4	0.519	INTRON CG34353
3L	5955736	3L_5955736_SNP [dm3] 3L_5962636_SNP [dm6]	T	A	1.411e^-4	0.519	INTERGENIC
2L	10715573	2L_10715573_SNP [dm3] 2L_10715573_SNP [dm6]	T	A	1.415e^-4	0.519	INTERGENIC
2R	18634534	2R_18634534_SNP [dm3] 2R_22747029_SNP [dm6]	A	T	1.417e^-4	0.519	SPLICE_SITE_REGION CG42260 INTRON CG42260	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11704774	2R_11704774_SNP [dm3] 2R_15817269_SNP [dm6]	A	C	1.418e^-4	0.519	UPSTREAM Zasp52 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	4520479	3L_4520479_SNP [dm3] 3L_4520479_SNP [dm6]	A	G	1.421e^-4	0.519	INTRON Tie
2L	15755244	2L_15755244_SNP [dm3] 2L_15755244_SNP [dm6]	A	G	1.422e^-4	0.519	SYNONYMOUS_CODING l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
3R	8091469	3R_8091469_SNP [dm3] 3R_12265747_SNP [dm6]	G	A	1.428e^-4	0.519	INTRON svp	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	19959379	3L_19959379_SNP [dm3] 3L_19966279_SNP [dm6]	A	G	1.430e^-4	0.519	SYNONYMOUS_CODING Ac76E
3L	15857504	3L_15857504_SNP [dm3] 3L_15864404_SNP [dm6]	C	A	1.432e^-4	0.519	NON_SYNONYMOUS_CODING pHCl INTRON pHCl
3L	9802179	3L_9802179_SNP [dm3] 3L_9809079_SNP [dm6]	T	C	1.432e^-4	0.519	DOWNSTREAM CG32052 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22908269	3R_22908269_SNP [dm3] 3R_27082547_SNP [dm6]	C	T	1.439e^-4	0.519	UTR_3_PRIME CG14257 DOWNSTREAM Cpr97Ea INTRON CG14257
2R	14220575	2R_14220575_SNP [dm3] 2R_18333070_SNP [dm6]	G	A	1.441e^-4	0.519	INTRON sbb
2L	16398100	2L_16398100_SNP [dm3] 2L_16398100_SNP [dm6]	C	G	1.441e^-4	0.519	INTERGENIC
2L	17601199	2L_17601199_SNP [dm3] 2L_17601199_SNP [dm6]	T	A	1.442e^-4	0.519	INTRON Sytalpha
3R	7747821	3R_7747821_SNP [dm3] 3R_11922099_SNP [dm6]	A	T	1.443e^-4	0.519	INTRON Cad87A
X	9093714	X_9093714_SNP [dm3] X_9199681_SNP [dm6]	G	A	1.444e^-4	0.519	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11458720	2L_11458720_SNP [dm3] 2L_11458720_SNP [dm6]	G	C	1.450e^-4	0.519	INTERGENIC
2L	12118234	2L_12118234_SNP [dm3] 2L_12118234_SNP [dm6]	T	C	1.451e^-4	0.519	INTRON CG17211
3R	2221973	3R_2221973_SNP [dm3] 3R_6396251_SNP [dm6]	G	T	1.457e^-4	0.519	INTRON Dmtn
2L	9809585	2L_9809585_SNP [dm3] 2L_9809585_SNP [dm6]	C	T	1.462e^-4	0.519	INTRON nAChRalpha6
3L	9966771	3L_9966771_SNP [dm3] 3L_9973671_SNP [dm6]	C	A	1.473e^-4	0.519	SYNONYMOUS_CODING vnc UTR_3_PRIME CG42455 UPSTREAM dpr6	TF binding site mE1_TFBS_sens
3L	9967409	3L_9967409_INS [dm3] 3L_9974309_INS [dm6]	C	ATGTTG	1.473e^-4	0.519	UPSTREAM dpr6 DOWNSTREAM vnc & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3L	6590431	3L_6590431_SNP [dm3] 3L_6597331_SNP [dm6]	A	G	1.474e^-4	0.519	SYNONYMOUS_CODING ndl	TF binding site mE1_TFBS_sens
2L	11436180	2L_11436180_SNP [dm3] 2L_11436180_SNP [dm6]	T	C	1.486e^-4	0.519	INTRON salm	TF binding site BDTNP1_TFBS_twi
3R	25202701	3R_25202701_SNP [dm3] 3R_29376979_SNP [dm6]	T	A	1.486e^-4	0.519	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9802329	3L_9802329_SNP [dm3] 3L_9809229_SNP [dm6]	G	T	1.487e^-4	0.519	DOWNSTREAM CG32052 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3444796	3L_3444796_SNP [dm3] 3L_3444796_SNP [dm6]	T	C	1.494e^-4	0.519	INTRON eIF5B	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	17607011	X_17607011_SNP [dm3] X_17712978_SNP [dm6]	G	T	1.495e^-4	0.519	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	21022274	3R_21022274_SNP [dm3] 3R_25196552_SNP [dm6]	G	T	1.499e^-4	0.519	DOWNSTREAM CG13653 INTERGENIC
2R	6175712	2R_6175712_SNP [dm3] 2R_10288207_SNP [dm6]	A	C	1.499e^-4	0.519	SYNONYMOUS_CODING CAP UTR_5_PRIME CAP INTRON CAP
3R	5305210	3R_5305210_SNP [dm3] 3R_9479488_SNP [dm6]	A	G	1.500e^-4	0.519	INTRON CG16779
2L	16551450	2L_16551450_SNP [dm3] 2L_16551450_SNP [dm6]	G	A	1.501e^-4	0.519	INTRON CG42389
3R	24059460	3R_24059460_SNP [dm3] 3R_28233738_SNP [dm6]	A	G	1.501e^-4	0.519	INTRON CG34354
X	17600277	X_17600277_SNP [dm3] X_17706244_SNP [dm6]	T	C	1.503e^-4	0.519	UTR_3_PRIME par-6
2R	16381345	2R_16381345_SNP [dm3] 2R_20493840_SNP [dm6]	C	T	1.503e^-4	0.519	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8179980	3R_8179980_SNP [dm3] 3R_12354258_SNP [dm6]	C	T	1.513e^-4	0.519	NON_SYNONYMOUS_CODING MBD-R2	TF binding site mE1_TFBS_cad
2L	19787791	2L_19787791_SNP [dm3] 2L_19787791_SNP [dm6]	C	G	1.516e^-4	0.519	INTRON CdGAPr
3R	10152038	3R_10152038_SNP [dm3] 3R_14326316_SNP [dm6]	T	C	1.520e^-4	0.519	START_GAINED Afti UTR_5_PRIME Afti UPSTREAM CG3321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14914111	2L_14914111_INS [dm3] 2L_14914111_INS [dm6]	T	TT	1.523e^-4	0.519	INTRON CG42313
X	14111114	X_14111114_DEL [dm3] X_14217081_DEL [dm6]	AA	A	1.524e^-4	0.519	INTRON l_1_G0007
3L	9607246	3L_9607246_SNP [dm3] 3L_9614146_SNP [dm6]	C	A	1.524e^-4	0.519	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	8340284	3R_8340284_SNP [dm3] 3R_12514562_SNP [dm6]	A	G	1.528e^-4	0.519	INTRON Octbeta3R
3R	9619267	3R_9619267_SNP [dm3] 3R_13793545_SNP [dm6]	C	T	1.530e^-4	0.519	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13437539	2L_13437539_SNP [dm3] 2L_13437539_SNP [dm6]	G	A	1.535e^-4	0.519	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
3R	24996775	3R_24996775_SNP [dm3] 3R_29171053_SNP [dm6]	C	T	1.535e^-4	0.519	SYNONYMOUS_CODING CG11898 DOWNSTREAM CG14509	TF binding site mE1_TFBS_kn
3L	19179077	3L_19179077_SNP [dm3] 3L_19185977_SNP [dm6]	T	G	1.539e^-4	0.519	INTRON fz2
3L	3231658	3L_3231658_SNP [dm3] 3L_3231658_SNP [dm6]	C	A	1.539e^-4	0.519	NON_SYNONYMOUS_CODING CG11505	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15093739	2L_15093739_SNP [dm3] 2L_15093739_SNP [dm6]	A	T	1.543e^-4	0.519	INTRON CG15270
3R	20883901	3R_20883901_SNP [dm3] 3R_25058179_SNP [dm6]	G	A	1.544e^-4	0.519	UPSTREAM Unc-13-4B INTRON Unc-13-4B
2L	5684125	2L_5684125_INS [dm3] 2L_5684125_INS [dm6]	C	CCC	1.544e^-4	0.519	INTERGENIC
2L	7726512	2L_7726512_SNP [dm3] 2L_7726512_SNP [dm6]	T	C	1.546e^-4	0.519	UPSTREAM CG13795 DOWNSTREAM CG13796 INTERGENIC
2R	3255635	2R_3255635_SNP [dm3] 2R_7368130_SNP [dm6]	A	G	1.548e^-4	0.519	INTRON Dscam1
3R	11265244	3R_11265244_SNP [dm3] 3R_15439522_SNP [dm6]	T	G	1.550e^-4	0.519	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
3R	16636567	3R_16636567_SNP [dm3] 3R_20810845_SNP [dm6]	G	T	1.552e^-4	0.519	UTR_3_PRIME Fancd2 DOWNSTREAM Syp
3R	1528900	3R_1528900_SNP [dm3] 3R_5703178_SNP [dm6]	C	G	1.553e^-4	0.519	INTRON plx	TF binding site mE1_TFBS_HSA
3R	8341819	3R_8341819_SNP [dm3] 3R_12516097_SNP [dm6]	A	C	1.557e^-4	0.519	INTRON Octbeta3R
3R	7755565	3R_7755565_SNP [dm3] 3R_11929843_SNP [dm6]	C	A	1.564e^-4	0.519	INTRON Cad87A
2R	14222429	2R_14222429_SNP [dm3] 2R_18334924_SNP [dm6]	T	G	1.568e^-4	0.519	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19702970	3R_19702970_DEL [dm3] 3R_23877248_DEL [dm6]	CG	C	1.570e^-4	0.519	INTRON Pli
2R	14224079	2R_14224079_SNP [dm3] 2R_18336574_SNP [dm6]	G	A	1.571e^-4	0.519	INTRON sbb
3L	17363905	3L_17363905_SNP [dm3] 3L_17370805_SNP [dm6]	G	A	1.573e^-4	0.519	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7186153	3R_7186153_SNP [dm3] 3R_11360431_SNP [dm6]	T	A	1.577e^-4	0.519	INTRON pros	regulatory region REDfly_CRMs
2L	8011087	2L_8011087_SNP [dm3] 2L_8011087_SNP [dm6]	C	A	1.578e^-4	0.519	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	14914096	2L_14914096_SNP [dm3] 2L_14914096_SNP [dm6]	C	G	1.579e^-4	0.519	INTRON CG42313
3R	5221280	3R_5221280_SNP [dm3] 3R_9395558_SNP [dm6]	C	T	1.585e^-4	0.519	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	1.587e^-4	0.519	INTRON Octbeta3R
3L	21619953	3L_21619953_SNP [dm3] 3L_21626853_SNP [dm6]	A	G	1.589e^-4	0.519	INTRON CG11306	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	2373140	X_2373140_SNP [dm3] X_2479107_SNP [dm6]	G	A	1.594e^-4	0.519	UTR_3_PRIME trol DOWNSTREAM trol INTRON trol
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	1.596e^-4	0.519	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
2L	15854133	2L_15854133_SNP [dm3] 2L_15854133_SNP [dm6]	A	G	1.604e^-4	0.519	START_GAINED Tektin-A UTR_5_PRIME Tektin-A UPSTREAM Tektin-A DOWNSTREAM CG13243
X	7242114	X_7242114_SNP [dm3] X_7348081_SNP [dm6]	G	T	1.608e^-4	0.519	UPSTREAM CG15034 INTRON CR44357 & 1 other
2L	7726517	2L_7726517_SNP [dm3] 2L_7726517_SNP [dm6]	T	G	1.613e^-4	0.519	UPSTREAM CG13795 DOWNSTREAM CG13796 INTERGENIC
3R	10914929	3R_10914929_SNP [dm3] 3R_15089207_SNP [dm6]	C	A	1.614e^-4	0.519	INTRON CG6966	TF binding site mE1_TFBS_Trl
3R	13761087	3R_13761087_SNP [dm3] 3R_17935365_SNP [dm6]	T	G	1.628e^-4	0.519	INTRON cpo
2L	3398194	2L_3398194_SNP [dm3] 2L_3398194_SNP [dm6]	T	C	1.632e^-4	0.519	SYNONYMOUS_CODING CG34175 UPSTREAM CR44792
3R	15770284	3R_15770284_SNP [dm3] 3R_19944562_SNP [dm6]	C	A	1.633e^-4	0.519	INTRON Hs6st
3L	11891552	3L_11891552_SNP [dm3] 3L_11898452_SNP [dm6]	T	A	1.635e^-4	0.519	UPSTREAM CR43624 INTRON CG44837
2L	11435864	2L_11435864_SNP [dm3] 2L_11435864_SNP [dm6]	G	C	1.636e^-4	0.519	UTR_3_PRIME salm	TF binding site BDTNP1_TFBS_twi
3R	10184839	3R_10184839_SNP [dm3] 3R_14359117_SNP [dm6]	G	A	1.637e^-4	0.519	NON_SYNONYMOUS_CODING CG31320 INTRON NK7.1
3R	7776051	3R_7776051_SNP [dm3] 3R_11950329_SNP [dm6]	G	C	1.638e^-4	0.519	NON_SYNONYMOUS_CODING CG31211	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9187589	3L_9187589_SNP [dm3] 3L_9194489_SNP [dm6]	G	A	1.639e^-4	0.519	INTERGENIC
2L	7726504	2L_7726504_SNP [dm3] 2L_7726504_SNP [dm6]	T	G	1.654e^-4	0.519	UPSTREAM CG13795 DOWNSTREAM CG13796 INTERGENIC
2L	16539753	2L_16539753_SNP [dm3] 2L_16539753_SNP [dm6]	A	T	1.655e^-4	0.519	INTERGENIC
2L	16539754	2L_16539754_SNP [dm3] 2L_16539754_SNP [dm6]	T	A	1.655e^-4	0.519	INTERGENIC
2L	12645756	2L_12645756_SNP [dm3] 2L_12645756_SNP [dm6]	A	G	1.656e^-4	0.519	INTRON Ref2
2L	3398094	2L_3398094_SNP [dm3] 2L_3398094_SNP [dm6]	G	T	1.656e^-4	0.519	UTR_5_PRIME CG34175 UPSTREAM CR44792
3R	22749869	3R_22749869_SNP [dm3] 3R_26924147_SNP [dm6]	G	T	1.657e^-4	0.519	INTRON sda
X	13238434	X_13238434_SNP [dm3] X_13344401_SNP [dm6]	A	T	1.657e^-4	0.519	DOWNSTREAM CR45708 INTERGENIC
3R	1619335	3R_1619335_SNP [dm3] 3R_5793613_SNP [dm6]	A	G	1.659e^-4	0.519	DOWNSTREAM CG1218 INTRON CG2046	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	12465636	3L_12465636_SNP [dm3] 3L_12472536_SNP [dm6]	T	C	1.662e^-4	0.519	INTRON CG10616
3R	20114212	3R_20114212_SNP [dm3] 3R_24288490_SNP [dm6]	G	A	1.665e^-4	0.519	UTR_3_PRIME CG6356 DOWNSTREAM CG34290	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15774763	3L_15774763_SNP [dm3] 3L_15781663_SNP [dm6]	T	C	1.666e^-4	0.519	INTERGENIC
3R	18384118	3R_18384118_DEL [dm3] 3R_22558396_DEL [dm6]	TT	T	1.668e^-4	0.519	UTR_3_PRIME CG5278
3R	17031923	3R_17031923_SNP [dm3] 3R_21206201_SNP [dm6]	C	A	1.669e^-4	0.519	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	12160930	2L_12160930_SNP [dm3] 2L_12160930_SNP [dm6]	G	A	1.672e^-4	0.519	UPSTREAM CG31861 INTRON CG31760
2R	20002926	2R_20002926_SNP [dm3] 2R_24115403_SNP [dm6]	A	G	1.673e^-4	0.519	SYNONYMOUS_CODING CG3253	TF binding site mE1_TFBS_sens
2L	12579593	2L_12579593_SNP [dm3] 2L_12579593_SNP [dm6]	G	C	1.676e^-4	0.519	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	7768667	3R_7768667_SNP [dm3] 3R_11942945_SNP [dm6]	G	T	1.677e^-4	0.519	INTRON Cad87A
X	8465162	X_8465162_SNP [dm3] X_8571129_SNP [dm6]	C	A	1.680e^-4	0.519	UTR_3_PRIME spirit UPSTREAM CG12111 DOWNSTREAM Trf4-1	TF binding site BDTNP1_TFBS_da
2R	18660097	2R_18660097_SNP [dm3] 2R_22772592_SNP [dm6]	G	C	1.683e^-4	0.519	INTRON CG42260
3L	19961534	3L_19961534_SNP [dm3] 3L_19968434_SNP [dm6]	T	A	1.688e^-4	0.519	INTRON Ac76E
2L	11197137	2L_11197137_SNP [dm3] 2L_11197137_SNP [dm6]	T	C	1.691e^-4	0.519	INTRON Ca-beta
2L	11191025	2L_11191025_SNP [dm3] 2L_11191025_SNP [dm6]	A	G	1.692e^-4	0.519	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10514035	3R_10514035_SNP [dm3] 3R_14688313_SNP [dm6]	T	G	1.692e^-4	0.519	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
X	17607516	X_17607516_SNP [dm3] X_17713483_SNP [dm6]	T	A	1.695e^-4	0.519	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12312514	2L_12312514_SNP [dm3] 2L_12312514_SNP [dm6]	A	T	1.695e^-4	0.519	DOWNSTREAM aret INTRON aret
3R	7186118	3R_7186118_SNP [dm3] 3R_11360396_SNP [dm6]	A	C	1.696e^-4	0.519	INTRON pros	regulatory region REDfly_CRMs
3R	8269744	3R_8269744_SNP [dm3] 3R_12444022_SNP [dm6]	A	G	1.698e^-4	0.519	UPSTREAM Desat1 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20019634	X_20019634_SNP [dm3] X_20125601_SNP [dm6]	A	G	1.699e^-4	0.519	DOWNSTREAM CG34331 INTERGENIC
2L	11574759	2L_11574759_SNP [dm3] 2L_11574759_SNP [dm6]	T	G	1.703e^-4	0.519	INTERGENIC
3L	3803010	3L_3803010_SNP [dm3] 3L_3803010_SNP [dm6]	G	A	1.709e^-4	0.519	DOWNSTREAM ntc INTRON CG32264
3R	1619191	3R_1619191_SNP [dm3] 3R_5793469_SNP [dm6]	T	G	1.710e^-4	0.519	NON_SYNONYMOUS_CODING CG2046 DOWNSTREAM CG1218	TF binding site mE1_TFBS_sens
3R	1629316	3R_1629316_SNP [dm3] 3R_5803594_SNP [dm6]	G	T	1.711e^-4	0.519	INTRON CG11000
2L	4320521	2L_4320521_SNP [dm3] 2L_4320521_SNP [dm6]	C	T	1.712e^-4	0.519	SYNONYMOUS_CODING tutl UTR_3_PRIME tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1635739	3R_1635739_SNP [dm3] 3R_5810017_SNP [dm6]	A	G	1.721e^-4	0.521	UTR_3_PRIME CG11000
3R	22896490	3R_22896490_DEL [dm3] 3R_27070768_DEL [dm6]	TT	T	1.722e^-4	0.521	UPSTREAM spz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4523418	3L_4523418_SNP [dm3] 3L_4523418_SNP [dm6]	T	C	1.729e^-4	0.522	INTRON Tie	TF binding site mE1_TFBS_inv
3R	13682672	3R_13682672_SNP [dm3] 3R_17856950_SNP [dm6]	T	G	1.730e^-4	0.522	INTRON tinc
3L	2197971	3L_2197971_SNP [dm3] 3L_2197971_SNP [dm6]	C	T	1.736e^-4	0.523	UTR_3_PRIME CG8960	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1234522	3L_1234522_SNP [dm3] 3L_1234522_SNP [dm6]	T	G	1.738e^-4	0.523	UPSTREAM CR45747 DOWNSTREAM CG33965 INTRON CG33966
X	7242586	X_7242586_SNP [dm3] X_7348553_SNP [dm6]	G	T	1.744e^-4	0.523	INTRON CR44357 & 1 other
3R	12861078	3R_12861078_SNP [dm3] 3R_17035356_SNP [dm6]	C	A	1.746e^-4	0.523	NON_SYNONYMOUS_CODING CG4009	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13611537	X_13611537_SNP [dm3] X_13717504_SNP [dm6]	C	T	1.754e^-4	0.524	SYNONYMOUS_CODING NnaD INTRON CG9940	TF binding site mE1_TFBS_chinmo
3R	10185081	3R_10185081_SNP [dm3] 3R_14359359_SNP [dm6]	A	G	1.755e^-4	0.524	SYNONYMOUS_CODING CG31320 INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12859142	3R_12859142_SNP [dm3] 3R_17033420_SNP [dm6]	A	C	1.757e^-4	0.524	UTR_3_PRIME CG31268 DOWNSTREAM CG4009
2L	9774791	2L_9774791_SNP [dm3] 2L_9774791_SNP [dm6]	A	G	1.763e^-4	0.525	SYNONYMOUS_CODING ppk11	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1623438	3R_1623438_SNP [dm3] 3R_5797716_SNP [dm6]	C	G	1.770e^-4	0.525	SYNONYMOUS_CODING CG10979	TF binding site BDTNP1_TFBS_da
3L	6590458	3L_6590458_SNP [dm3] 3L_6597358_SNP [dm6]	A	C	1.772e^-4	0.525	NON_SYNONYMOUS_CODING ndl	TF binding site mE1_TFBS_sens
3L	9607372	3L_9607372_SNP [dm3] 3L_9614272_SNP [dm6]	A	T	1.773e^-4	0.525	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	1457387	3L_1457387_SNP [dm3] 3L_1457387_SNP [dm6]	G	A	1.779e^-4	0.525	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	15093755	2L_15093755_SNP [dm3] 2L_15093755_SNP [dm6]	T	C	1.785e^-4	0.525	INTRON CG15270
3L	16993371	3L_16993371_SNP [dm3] 3L_17000271_SNP [dm6]	C	A	1.787e^-4	0.525	INTRON CG3764
3L	6974285	3L_6974285_DEL [dm3] 3L_6981185_DEL [dm6]	CT	C	1.788e^-4	0.525	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	10296305	3R_10296305_SNP [dm3] 3R_14470583_SNP [dm6]	T	G	1.791e^-4	0.525	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12681264	X_12681264_SNP [dm3] X_12787231_SNP [dm6]	C	G	1.794e^-4	0.525	UTR_3_PRIME Pde9
X	12681265	X_12681265_SNP [dm3] X_12787232_SNP [dm6]	G	A	1.794e^-4	0.525	UTR_3_PRIME Pde9
3R	22115635	3R_22115635_SNP [dm3] 3R_26289913_SNP [dm6]	C	A	1.795e^-4	0.525	INTERGENIC
3R	11237326	3R_11237326_SNP [dm3] 3R_15411604_SNP [dm6]	A	G	1.798e^-4	0.525	INTRON Atx2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8349556	3R_8349556_SNP [dm3] 3R_12523834_SNP [dm6]	G	T	1.805e^-4	0.526	INTRON Octbeta3R
3R	15306185	3R_15306185_SNP [dm3] 3R_19480463_SNP [dm6]	A	T	1.808e^-4	0.526	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17607642	X_17607642_DEL [dm3] X_17713609_DEL [dm6]	AAATATTATC	T	1.810e^-4	0.526	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	3595423	2L_3595423_INS [dm3] 2L_3595423_INS [dm6]	G	GG	1.815e^-4	0.527	INTERGENIC
3R	7794834	3R_7794834_SNP [dm3] 3R_11969112_SNP [dm6]	A	G	1.816e^-4	0.527	INTRON GC1
3L	6973985	3L_6973985_SNP [dm3] 3L_6980885_SNP [dm6]	A	C	1.826e^-4	0.528	UPSTREAM Galphai INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	2771405	3R_2771405_SNP [dm3] 3R_6945683_SNP [dm6]	G	T	1.830e^-4	0.528	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10182482	3L_10182482_SNP [dm3] 3L_10189382_SNP [dm6]	G	A	1.832e^-4	0.528	DOWNSTREAM ect INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	8346633	3R_8346633_SNP [dm3] 3R_12520911_SNP [dm6]	G	A	1.839e^-4	0.528	INTRON Octbeta3R
3R	20883893	3R_20883893_SNP [dm3] 3R_25058171_SNP [dm6]	C	A	1.841e^-4	0.528	UPSTREAM Unc-13-4B INTRON Unc-13-4B
3L	15774762	3L_15774762_SNP [dm3] 3L_15781662_SNP [dm6]	G	T	1.842e^-4	0.528	INTERGENIC
X	12503044	X_12503044_SNP [dm3] X_12609011_SNP [dm6]	A	G	1.843e^-4	0.528	UTR_3_PRIME Sec16 DOWNSTREAM CG1463
X	7871129	X_7871129_SNP [dm3] X_7977096_SNP [dm6]	T	C	1.844e^-4	0.528	INTRON sn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	1.850e^-4	0.528	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	1.853e^-4	0.528	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
2L	3398102	2L_3398102_SNP [dm3] 2L_3398102_SNP [dm6]	C	T	1.855e^-4	0.528	UTR_5_PRIME CG34175 UPSTREAM CR44792
X	7244155	X_7244155_SNP [dm3] X_7350122_SNP [dm6]	T	C	1.856e^-4	0.528	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6932879	2L_6932879_SNP [dm3] 2L_6932879_SNP [dm6]	A	G	1.857e^-4	0.528	SYNONYMOUS_CODING CG18304 DOWNSTREAM Hrb27C & 1 other	TF binding site mE1_TFBS_cad
3R	15768863	3R_15768863_SNP [dm3] 3R_19943141_SNP [dm6]	C	G	1.866e^-4	0.529	INTRON Hs6st
X	7242583	X_7242583_SNP [dm3] X_7348550_SNP [dm6]	T	C	1.873e^-4	0.53	INTRON CR44357 & 1 other
2L	7912986	2L_7912986_SNP [dm3] 2L_7912986_SNP [dm6]	T	A	1.877e^-4	0.53	INTRON Snoo
3R	10382447	3R_10382447_SNP [dm3] 3R_14556725_SNP [dm6]	T	A	1.886e^-4	0.53	UPSTREAM Pde6 INTRON Pde6
3R	8026722	3R_8026722_SNP [dm3] 3R_12201000_SNP [dm6]	G	A	1.890e^-4	0.53	INTERGENIC
2R	7657536	2R_7657536_SNP [dm3] 2R_11770031_SNP [dm6]	G	A	1.891e^-4	0.53	DOWNSTREAM CG13193 INTRON ths	TF binding site mE1_TFBS_cad
2R	12181235	2R_12181235_SNP [dm3] 2R_16293730_SNP [dm6]	G	A	1.893e^-4	0.53	SYNONYMOUS_CODING CG7747 UPSTREAM Atg9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10382186	3R_10382186_SNP [dm3] 3R_14556464_SNP [dm6]	T	C	1.895e^-4	0.53	UPSTREAM Pde6 INTRON Pde6
3R	25202680	3R_25202680_SNP [dm3] 3R_29376958_SNP [dm6]	A	T	1.895e^-4	0.53	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1234535	3L_1234535_SNP [dm3] 3L_1234535_SNP [dm6]	T	C	1.901e^-4	0.53	SPLICE_SITE_REGION CG33966 UPSTREAM CR45747 DOWNSTREAM CG33965 INTRON CG33966
X	13210498	X_13210498_SNP [dm3] X_13316465_SNP [dm6]	C	A	1.903e^-4	0.53	INTRON IP3K2
3R	16873225	3R_16873225_SNP [dm3] 3R_21047503_SNP [dm6]	G	A	1.905e^-4	0.53	UTR_3_PRIME CG7079 UPSTREAM CG31207 DOWNSTREAM CG7079
2L	2706526	2L_2706526_SNP [dm3] 2L_2706526_SNP [dm6]	A	G	1.909e^-4	0.53	INTRON CG31690
2L	16366433	2L_16366433_SNP [dm3] 2L_16366433_SNP [dm6]	A	G	1.910e^-4	0.53	NON_SYNONYMOUS_CODING jhamt
3L	2198016	3L_2198016_SNP [dm3] 3L_2198016_SNP [dm6]	C	T	1.913e^-4	0.53	UTR_3_PRIME CG8960	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18853715	2R_18853715_SNP [dm3] 2R_22966192_SNP [dm6]	T	G	1.913e^-4	0.53	INTERGENIC
2L	7726516	2L_7726516_SNP [dm3] 2L_7726516_SNP [dm6]	C	A	1.929e^-4	0.53	UPSTREAM CG13795 DOWNSTREAM CG13796 INTERGENIC
3R	8432493	3R_8432493_SNP [dm3] 3R_12606771_SNP [dm6]	G	A	1.929e^-4	0.53	INTERGENIC
2R	14222653	2R_14222653_DEL [dm3] 2R_18335148_DEL [dm6]	CG	A	1.930e^-4	0.53	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	2724922	3R_2724922_SNP [dm3] 3R_6899200_SNP [dm6]	G	T	1.933e^-4	0.53	INTRON Antp
2L	16482857	2L_16482857_MNP [dm3] 2L_16482857_MNP [dm6]	TGC	ATT	1.933e^-4	0.53	INTRON dac	regulatory region REDfly_CRMs
2L	16482750	2L_16482750_INS [dm3] 2L_16482750_INS [dm6]	T	TT	1.935e^-4	0.53	INTRON dac	regulatory region REDfly_CRMs
3R	11853373	3R_11853373_SNP [dm3] 3R_16027651_SNP [dm6]	T	G	1.935e^-4	0.53	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Kr
3L	9410635	3L_9410635_SNP [dm3] 3L_9417535_SNP [dm6]	C	G	1.945e^-4	0.53	UPSTREAM CG3982 INTRON CG3967
2L	14463719	2L_14463719_SNP [dm3] 2L_14463719_SNP [dm6]	C	A	1.946e^-4	0.53	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	14299301	X_14299301_INS [dm3] X_14405268_INS [dm6]	A	AGAA	1.947e^-4	0.53	INTRON dpr8
3L	11269532	3L_11269532_SNP [dm3] 3L_11276432_SNP [dm6]	A	G	1.948e^-4	0.53	INTERGENIC
3R	10300284	3R_10300284_SNP [dm3] 3R_14474562_SNP [dm6]	T	C	1.948e^-4	0.53	INTRON cv-c	TF binding site mE1_TFBS_cad
3R	5429827	3R_5429827_SNP [dm3] 3R_9604105_SNP [dm6]	G	A	1.948e^-4	0.53	INTRON CG8312	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
3R	18844764	3R_18844764_SNP [dm3] 3R_23019042_SNP [dm6]	G	A	1.953e^-4	0.531	INTERGENIC
3L	6363409	3L_6363409_SNP [dm3] 3L_6370309_SNP [dm6]	G	T	1.959e^-4	0.532	EXON CR45419
3R	11853021	3R_11853021_SNP [dm3] 3R_16027299_SNP [dm6]	G	A	1.961e^-4	0.532	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	2197982	3L_2197982_SNP [dm3] 3L_2197982_SNP [dm6]	A	C	1.967e^-4	0.532	UTR_3_PRIME CG8960	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21388046	3R_21388046_SNP [dm3] 3R_25562324_SNP [dm6]	G	A	1.969e^-4	0.532	INTRON msi
3R	7814201	3R_7814201_SNP [dm3] 3R_11988479_SNP [dm6]	T	G	1.984e^-4	0.535	INTRON mfas
2L	9701750	2L_9701750_SNP [dm3] 2L_9701750_SNP [dm6]	G	C	1.990e^-4	0.536	SYNONYMOUS_CODING pelo DOWNSTREAM CG31710	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12859493	3R_12859493_SNP [dm3] 3R_17033771_SNP [dm6]	A	C	2.014e^-4	0.537	UTR_3_PRIME CG4009 DOWNSTREAM CG31268
3L	11588249	3L_11588249_SNP [dm3] 3L_11595149_SNP [dm6]	A	T	2.015e^-4	0.537	INTERGENIC
3L	6957914	3L_6957914_SNP [dm3] 3L_6964814_SNP [dm6]	C	G	2.015e^-4	0.537	UPSTREAM sgl DOWNSTREAM CG10064 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	18153006	2L_18153006_SNP [dm3] 2L_18153006_SNP [dm6]	A	T	2.016e^-4	0.537	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
X	17274045	X_17274045_SNP [dm3] X_17380012_SNP [dm6]	A	G	2.017e^-4	0.537	INTERGENIC
2R	10889376	2R_10889376_SNP [dm3] 2R_15001871_SNP [dm6]	A	G	2.018e^-4	0.537	INTERGENIC
3R	9654710	3R_9654710_SNP [dm3] 3R_13828988_SNP [dm6]	T	G	2.023e^-4	0.537	UPSTREAM Mst87F DOWNSTREAM CR43300 INTERGENIC
3L	2487143	3L_2487143_SNP [dm3] 3L_2487143_SNP [dm6]	A	T	2.026e^-4	0.537	INTRON CG45186
2L	12102713	2L_12102713_SNP [dm3] 2L_12102713_SNP [dm6]	G	C	2.027e^-4	0.537	SYNONYMOUS_CODING Patsas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_chinmo
3R	25065080	3R_25065080_SNP [dm3] 3R_29239358_SNP [dm6]	G	A	2.031e^-4	0.537	SPLICE_SITE_REGION CG31427 UPSTREAM CG11951 INTRON CG31427
3L	4522092	3L_4522092_SNP [dm3] 3L_4522092_SNP [dm6]	C	T	2.033e^-4	0.537	INTRON Tie
3L	12447057	3L_12447057_SNP [dm3] 3L_12453957_SNP [dm6]	T	A	2.033e^-4	0.537	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	19441252	2L_19441252_SNP [dm3] 2L_19441252_SNP [dm6]	A	G	2.034e^-4	0.537	UTR_5_PRIME CG10237 UPSTREAM CG10237 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	9897421	3R_9897421_SNP [dm3] 3R_14071699_SNP [dm6]	A	G	2.035e^-4	0.537	INTRON foxo
3R	19990741	3R_19990741_SNP [dm3] 3R_24165019_SNP [dm6]	C	A	2.035e^-4	0.537	SYNONYMOUS_CODING Apc2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8067112	2L_8067112_SNP [dm3] 2L_8067112_SNP [dm6]	G	A	2.039e^-4	0.537	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
2R	7642972	2R_7642972_SNP [dm3] 2R_11755467_SNP [dm6]	C	G	2.041e^-4	0.537	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	7454200	2L_7454200_SNP [dm3] 2L_7454200_SNP [dm6]	A	T	2.044e^-4	0.537	UTR_5_PRIME Gr28a DOWNSTREAM Gr28b
2L	7921614	2L_7921614_SNP [dm3] 2L_7921614_SNP [dm6]	A	T	2.050e^-4	0.538	INTRON Snoo
3L	8824927	3L_8824927_SNP [dm3] 3L_8831827_SNP [dm6]	G	T	2.055e^-4	0.538	INTRON dally	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	9654605	3R_9654605_SNP [dm3] 3R_13828883_SNP [dm6]	G	A	2.055e^-4	0.538	UPSTREAM Mst87F DOWNSTREAM CR43300 INTERGENIC
2R	5577461	2R_5577461_SNP [dm3] 2R_9689956_SNP [dm6]	G	T	2.070e^-4	0.54	INTRON Uba1	TF binding site mE1_TFBS_cad
3L	12332746	3L_12332746_SNP [dm3] 3L_12339646_SNP [dm6]	C	T	2.081e^-4	0.54	UTR_3_PRIME CrzR	TF binding site BDTNP1_TFBS_twi
3L	12332747	3L_12332747_SNP [dm3] 3L_12339647_SNP [dm6]	C	A	2.082e^-4	0.54	UTR_3_PRIME CrzR	TF binding site BDTNP1_TFBS_twi
3L	2048994	3L_2048994_SNP [dm3] 3L_2048994_SNP [dm6]	C	T	2.084e^-4	0.54	NON_SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_sens
3R	25829835	3R_25829835_SNP [dm3] 3R_30004113_SNP [dm6]	C	T	2.091e^-4	0.54	SYNONYMOUS_CODING CG7911 UPSTREAM Nlp DOWNSTREAM Tace	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	7244039	X_7244039_SNP [dm3] X_7350006_SNP [dm6]	T	G	2.092e^-4	0.54	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12160944	2L_12160944_SNP [dm3] 2L_12160944_SNP [dm6]	G	A	2.094e^-4	0.54	UPSTREAM CG31861 INTRON CG31760
3L	3270208	3L_3270208_SNP [dm3] 3L_3270208_SNP [dm6]	A	G	2.098e^-4	0.54	UPSTREAM CG14960 INTERGENIC
3R	13148401	3R_13148401_SNP [dm3] 3R_17322679_SNP [dm6]	A	T	2.100e^-4	0.54	INTRON beat-IIa
2R	19514327	2R_19514327_SNP [dm3] 2R_23626804_SNP [dm6]	A	C	2.101e^-4	0.54	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9623169	3R_9623169_SNP [dm3] 3R_13797447_SNP [dm6]	T	G	2.103e^-4	0.54	UPSTREAM tRNA:CR31588 DOWNSTREAM tRNA:CR31331 INTERGENIC	silencer mE1_HDAC_PRE
3R	9623213	3R_9623213_SNP [dm3] 3R_13797491_SNP [dm6]	G	C	2.103e^-4	0.54	UPSTREAM tRNA:CR31588 DOWNSTREAM tRNA:CR31331 INTERGENIC	silencer mE1_HDAC_PRE
2L	10017531	2L_10017531_SNP [dm3] 2L_10017531_SNP [dm6]	T	G	2.108e^-4	0.54	UPSTREAM CG13131 INTERGENIC
X	18988472	X_18988472_SNP [dm3] X_19094439_SNP [dm6]	C	T	2.111e^-4	0.54	INTERGENIC
2L	16540425	2L_16540425_SNP [dm3] 2L_16540425_SNP [dm6]	C	T	2.113e^-4	0.54	INTERGENIC
3L	15774756	3L_15774756_SNP [dm3] 3L_15781656_SNP [dm6]	G	A	2.114e^-4	0.54	INTERGENIC
3R	22829028	3R_22829028_SNP [dm3] 3R_27003306_SNP [dm6]	G	A	2.114e^-4	0.54	UTR_3_PRIME CG6296 DOWNSTREAM CG31077 INTRON RYa-R
2L	11455144	2L_11455144_SNP [dm3] 2L_11455144_SNP [dm6]	A	G	2.124e^-4	0.541	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10715581	2L_10715581_SNP [dm3] 2L_10715581_SNP [dm6]	A	T	2.127e^-4	0.541	INTERGENIC
2L	1949065	2L_1949065_SNP [dm3] 2L_1949065_SNP [dm6]	A	T	2.127e^-4	0.541	INTERGENIC	regulatory region REDfly_CRMs
X	7064210	X_7064210_INS [dm3] X_7170177_INS [dm6]	T	TGGCACC	2.146e^-4	0.543	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18704110	2R_18704110_SNP [dm3] 2R_22816605_SNP [dm6]	A	G	2.147e^-4	0.543	UPSTREAM CG30271 DOWNSTREAM stl INTRON CG30271
3R	21146888	3R_21146888_SNP [dm3] 3R_25321166_SNP [dm6]	T	A	2.148e^-4	0.543	UTR_3_PRIME CG10562
2L	17561670	2L_17561670_SNP [dm3] 2L_17561670_SNP [dm6]	G	A	2.149e^-4	0.543	INTERGENIC
3L	19969059	3L_19969059_SNP [dm3] 3L_19975959_SNP [dm6]	G	T	2.149e^-4	0.543	INTRON Ac76E
X	17301665	X_17301665_SNP [dm3] X_17407632_SNP [dm6]	G	T	2.149e^-4	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14230351	3R_14230351_SNP [dm3] 3R_18404629_SNP [dm6]	A	G	2.161e^-4	0.544	UTR_3_PRIME koko UPSTREAM CG7685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	11012271	2L_11012271_SNP [dm3] 2L_11012271_SNP [dm6]	T	G	2.162e^-4	0.544	DOWNSTREAM dUTPase & 1 other INTERGENIC
3R	9623163	3R_9623163_SNP [dm3] 3R_13797441_SNP [dm6]	C	G	2.164e^-4	0.544	UPSTREAM tRNA:CR31588 DOWNSTREAM tRNA:CR31331 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	12312517	2L_12312517_DEL [dm3] 2L_12312517_DEL [dm6]	CC	C	2.173e^-4	0.545	DOWNSTREAM aret INTRON aret
3L	465721	3L_465721_SNP [dm3] 3L_465721_SNP [dm6]	A	G	2.180e^-4	0.545	INTRON klar
2R	10816369	2R_10816369_MNP [dm3] 2R_14928864_MNP [dm6]	ATA	TAC	2.182e^-4	0.545	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	2.183e^-4	0.545	INTRON CR44941
2R	17805059	2R_17805059_SNP [dm3] 2R_21917554_SNP [dm6]	G	A	2.184e^-4	0.545	INTRON Fili
2R	11604476	2R_11604476_SNP [dm3] 2R_15716971_SNP [dm6]	A	G	2.186e^-4	0.545	INTERGENIC
3R	23335860	3R_23335860_SNP [dm3] 3R_27510138_SNP [dm6]	T	G	2.199e^-4	0.545	INTERGENIC
3L	9318720	3L_9318720_SNP [dm3] 3L_9325620_SNP [dm6]	C	T	2.200e^-4	0.545	INTERGENIC
2L	9709653	2L_9709653_SNP [dm3] 2L_9709653_SNP [dm6]	G	T	2.201e^-4	0.545	SYNONYMOUS_CODING CG4364 DOWNSTREAM pelo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	10899730	3R_10899730_SNP [dm3] 3R_15074008_SNP [dm6]	T	A	2.201e^-4	0.545	INTRON dpr9
3L	9179724	3L_9179724_SNP [dm3] 3L_9186624_SNP [dm6]	G	A	2.208e^-4	0.545	INTERGENIC
3L	7389596	3L_7389596_SNP [dm3] 3L_7396496_SNP [dm6]	C	G	2.211e^-4	0.545	NON_SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563	TF binding site mE1_TFBS_HSA
3R	12851058	3R_12851058_SNP [dm3] 3R_17025336_SNP [dm6]	A	G	2.216e^-4	0.545	INTRON Pxd
3L	7307505	3L_7307505_SNP [dm3] 3L_7314405_SNP [dm6]	C	T	2.218e^-4	0.545	INTERGENIC
3R	19166392	3R_19166392_SNP [dm3] 3R_23340670_SNP [dm6]	A	C	2.220e^-4	0.545	INTRON pnt
3L	23843191	3L_23843191_SNP [dm3] 3L_23850091_SNP [dm6]	C	T	2.225e^-4	0.545	INTRON CG40470
3R	8341185	3R_8341185_SNP [dm3] 3R_12515463_SNP [dm6]	G	C	2.228e^-4	0.545	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4184935	3R_4184935_SNP [dm3] 3R_8359213_SNP [dm6]	C	T	2.234e^-4	0.545	SYNONYMOUS_CODING stck DOWNSTREAM CG9684	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6585791	3L_6585791_SNP [dm3] 3L_6592691_SNP [dm6]	G	T	2.234e^-4	0.545	UTR_3_PRIME CG18769 DOWNSTREAM CG18769
2R	18218751	2R_18218751_SNP [dm3] 2R_22331246_SNP [dm6]	A	C	2.241e^-4	0.545	UPSTREAM pgc INTRON pgc & 1 other
3L	10346526	3L_10346526_SNP [dm3] 3L_10353426_SNP [dm6]	G	A	2.245e^-4	0.545	INTRON CR44327
3R	7754190	3R_7754190_SNP [dm3] 3R_11928468_SNP [dm6]	T	C	2.245e^-4	0.545	INTRON Cad87A
3R	7755808	3R_7755808_SNP [dm3] 3R_11930086_SNP [dm6]	A	G	2.245e^-4	0.545	INTRON Cad87A
2L	8067140	2L_8067140_SNP [dm3] 2L_8067140_SNP [dm6]	T	C	2.251e^-4	0.545	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
2L	7726522	2L_7726522_SNP [dm3] 2L_7726522_SNP [dm6]	T	C	2.255e^-4	0.545	UPSTREAM CG13795 DOWNSTREAM CG13796 INTERGENIC
3R	22908661	3R_22908661_SNP [dm3] 3R_27082939_SNP [dm6]	G	C	2.257e^-4	0.545	DOWNSTREAM Cpr97Ea & 1 other INTERGENIC	TF binding site mE1_TFBS_D
3L	9793552	3L_9793552_SNP [dm3] 3L_9800452_SNP [dm6]	T	C	2.258e^-4	0.545	DOWNSTREAM Ilp3 & 1 other INTRON CG32052
3R	11852567	3R_11852567_SNP [dm3] 3R_16026845_SNP [dm6]	T	A	2.259e^-4	0.545	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
X	8552892	X_8552892_SNP [dm3] X_8658859_SNP [dm6]	G	A	2.262e^-4	0.545	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	3271640	3L_3271640_SNP [dm3] 3L_3271640_SNP [dm6]	T	A	2.263e^-4	0.545	INTRON CG14960	TF binding site mE1_TFBS_cad
2L	18174503	2L_18174503_SNP [dm3] 2L_18174503_SNP [dm6]	G	A	2.267e^-4	0.545	INTRON CG42750
2R	12332584	2R_12332584_SNP [dm3] 2R_16445079_SNP [dm6]	G	A	2.267e^-4	0.545	UPSTREAM CG15925 DOWNSTREAM CG4409 INTERGENIC
3R	7750820	3R_7750820_SNP [dm3] 3R_11925098_SNP [dm6]	C	G	2.268e^-4	0.545	INTRON Cad87A	TF binding site mE1_TFBS_HSA
X	17859272	X_17859272_SNP [dm3] X_17965239_SNP [dm6]	A	G	2.271e^-4	0.545	INTRON Sh
X	5868224	X_5868224_DEL [dm3] X_5974191_DEL [dm6]	TCCCTGAT	T	2.276e^-4	0.545	INTRON Grip	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	13908193	3R_13908193_SNP [dm3] 3R_18082471_SNP [dm6]	A	G	2.283e^-4	0.545	UTR_3_PRIME CG14317	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19550990	2R_19550990_SNP [dm3] 2R_23663467_SNP [dm6]	G	A	2.284e^-4	0.545	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3445173	3L_3445173_SNP [dm3] 3L_3445173_SNP [dm6]	A	T	2.284e^-4	0.545	INTRON eIF5B
3L	11891414	3L_11891414_SNP [dm3] 3L_11898314_SNP [dm6]	C	A	2.287e^-4	0.545	UPSTREAM CR43624 INTRON CG44837
2L	6174242	2L_6174242_SNP [dm3] 2L_6174242_SNP [dm6]	T	C	2.288e^-4	0.545	INTERGENIC
2L	16398594	2L_16398594_SNP [dm3] 2L_16398594_SNP [dm6]	A	G	2.290e^-4	0.545	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	935763	3L_935763_SNP [dm3] 3L_935763_SNP [dm6]	G	A	2.291e^-4	0.545	INTRON Glut1
3R	14076445	3R_14076445_SNP [dm3] 3R_18250723_SNP [dm6]	T	A	2.295e^-4	0.545	UPSTREAM CG18598 DOWNSTREAM 14-3-3epsilon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10599739	3R_10599739_SNP [dm3] 3R_14774017_SNP [dm6]	A	C	2.303e^-4	0.546	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16541422	2L_16541422_SNP [dm3] 2L_16541422_SNP [dm6]	T	G	2.307e^-4	0.546	INTERGENIC
2L	7726510	2L_7726510_INS [dm3] 2L_7726510_INS [dm6]	A	ATATCGAA	2.309e^-4	0.546	UPSTREAM CG13795 DOWNSTREAM CG13796 INTERGENIC
2L	13483015	2L_13483015_SNP [dm3] 2L_13483015_SNP [dm6]	C	T	2.318e^-4	0.546	INTRON CG42784
X	8727891	X_8727891_SNP [dm3] X_8833858_SNP [dm6]	A	C	2.323e^-4	0.546	INTERGENIC
3L	8816309	3L_8816309_SNP [dm3] 3L_8823209_SNP [dm6]	C	T	2.326e^-4	0.546	INTERGENIC
2R	5860984	2R_5860984_SNP [dm3] 2R_9973479_SNP [dm6]	A	G	2.328e^-4	0.546	DOWNSTREAM CG12134 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	17405940	2R_17405940_SNP [dm3] 2R_21518435_SNP [dm6]	A	T	2.330e^-4	0.546	DOWNSTREAM CG30288 INTRON CG10494	TF binding site mE1_TFBS_sens
2L	7306631	2L_7306631_SNP [dm3] 2L_7306631_SNP [dm6]	T	A	2.333e^-4	0.546	UPSTREAM wg INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3R	21655644	3R_21655644_SNP [dm3] 3R_25829922_SNP [dm6]	T	C	2.334e^-4	0.546	UPSTREAM Mst57Dc DOWNSTREAM Sfp96F & 1 other INTERGENIC
3L	14208357	3L_14208357_SNP [dm3] 3L_14215257_SNP [dm6]	G	A	2.335e^-4	0.546	INTRON nuf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7442252	3L_7442252_SNP [dm3] 3L_7449152_SNP [dm6]	C	T	2.335e^-4	0.546	INTRON CG42458
3L	9675941	3L_9675941_SNP [dm3] 3L_9682841_SNP [dm6]	C	A	2.337e^-4	0.546	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10354702	3L_10354702_SNP [dm3] 3L_10361602_SNP [dm6]	T	A	2.338e^-4	0.546	EXON CR44327	TF binding site mE1_TFBS_cad
2L	11472129	2L_11472129_SNP [dm3] 2L_11472129_SNP [dm6]	A	G	2.340e^-4	0.546	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12010279	2R_12010279_SNP [dm3] 2R_16122774_SNP [dm6]	A	G	2.341e^-4	0.546	UPSTREAM CG30095 DOWNSTREAM Jhe INTERGENIC
3R	26084847	3R_26084847_SNP [dm3] 3R_30259125_SNP [dm6]	T	C	2.362e^-4	0.549	INTERGENIC
3L	7202735	3L_7202735_SNP [dm3] 3L_7209635_SNP [dm6]	C	A	2.365e^-4	0.549	INTERGENIC
3R	14135128	3R_14135128_SNP [dm3] 3R_18309406_SNP [dm6]	T	A	2.366e^-4	0.549	START_GAINED PKD UTR_5_PRIME PKD
3R	12858973	3R_12858973_SNP [dm3] 3R_17033251_SNP [dm6]	T	C	2.367e^-4	0.549	UTR_3_PRIME CG31268 DOWNSTREAM CG4009
2R	18110109	2R_18110109_SNP [dm3] 2R_22222604_SNP [dm6]	A	G	2.370e^-4	0.549	SPLICE_SITE_REGION Oatp58Db INTRON Oatp58Db	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11010697	2L_11010697_SNP [dm3] 2L_11010697_SNP [dm6]	C	A	2.376e^-4	0.549	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	7353181	3L_7353181_SNP [dm3] 3L_7360081_SNP [dm6]	G	C	2.386e^-4	0.551	UTR_5_PRIME pst UPSTREAM Sec63	TF binding site BDTNP1_TFBS_dl
2L	10679916	2L_10679916_SNP [dm3] 2L_10679916_SNP [dm6]	A	T	2.386e^-4	0.551	DOWNSTREAM CR44180 & 1 other INTERGENIC
3R	19535773	3R_19535773_SNP [dm3] 3R_23710051_SNP [dm6]	T	C	2.394e^-4	0.551	UPSTREAM CG10301 INTERGENIC
3L	15774768	3L_15774768_INS [dm3] 3L_15781668_INS [dm6]	C	CCG	2.395e^-4	0.551	INTERGENIC
X	18476066	X_18476066_INS [dm3] X_18582033_INS [dm6]	C	CTTCCCC	2.397e^-4	0.551	INTERGENIC
3L	10006208	3L_10006208_SNP [dm3] 3L_10013108_SNP [dm6]	G	C	2.406e^-4	0.552	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11293727	2R_11293727_SNP [dm3] 2R_15406222_SNP [dm6]	A	C	2.407e^-4	0.552	INTRON CG43729
2L	16553129	2L_16553129_SNP [dm3] 2L_16553129_SNP [dm6]	T	C	2.414e^-4	0.552	INTRON CG42389
2L	11308973	2L_11308973_SNP [dm3] 2L_11308973_SNP [dm6]	T	C	2.419e^-4	0.552	DOWNSTREAM CR43721 INTERGENIC
3L	3952837	3L_3952837_SNP [dm3] 3L_3952837_SNP [dm6]	T	C	2.421e^-4	0.552	UPSTREAM CG14984 INTERGENIC
2R	4074129	2R_4074129_SNP [dm3] 2R_8186624_SNP [dm6]	T	A	2.422e^-4	0.552	INTRON LRP1
3R	8501523	3R_8501523_SNP [dm3] 3R_12675801_SNP [dm6]	G	C	2.426e^-4	0.552	SYNONYMOUS_CODING CG6188 DOWNSTREAM CG43630 & 1 other	TF binding site mE1_TFBS_cad
3R	12243708	3R_12243708_SNP [dm3] 3R_16417986_SNP [dm6]	C	T	2.429e^-4	0.552	INTERGENIC	regulatory region REDfly_CRMs
2R	9569294	2R_9569294_SNP [dm3] 2R_13681789_SNP [dm6]	G	A	2.430e^-4	0.552	INTRON fas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15857407	3L_15857407_SNP [dm3] 3L_15864307_SNP [dm6]	C	G	2.435e^-4	0.552	UTR_3_PRIME pHCl INTRON pHCl
2R	17656051	2R_17656051_SNP [dm3] 2R_21768546_SNP [dm6]	G	C	2.437e^-4	0.552	NON_SYNONYMOUS_CODING CG30395
3R	14862787	3R_14862787_SNP [dm3] 3R_19037065_SNP [dm6]	T	C	2.439e^-4	0.552	INTRON CG6026	TF binding site mE1_TFBS_inv
2L	3918251	2L_3918251_SNP [dm3] 2L_3918251_SNP [dm6]	A	G	2.441e^-4	0.552	SYNONYMOUS_CODING fred	TF binding site mE1_TFBS_sens
2L	12160967	2L_12160967_SNP [dm3] 2L_12160967_SNP [dm6]	T	G	2.452e^-4	0.552	UPSTREAM CG31861 INTRON CG31760
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	2.453e^-4	0.552	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3L	10966830	3L_10966830_SNP [dm3] 3L_10973730_SNP [dm6]	G	A	2.455e^-4	0.552	DOWNSTREAM CG14147 INTERGENIC
X	17908830	X_17908830_DEL [dm3] X_18014797_DEL [dm6]	ATAACAACAAAA...	A	2.457e^-4	0.552	UPSTREAM Sh INTRON Sh
2L	17560915	2L_17560915_SNP [dm3] 2L_17560915_SNP [dm6]	G	C	2.461e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	17867650	2L_17867650_SNP [dm3] 2L_17867650_SNP [dm6]	T	G	2.465e^-4	0.552	INTRON CadN2
3L	5590881	3L_5590881_SNP [dm3] 3L_5597781_SNP [dm6]	A	G	2.466e^-4	0.552	DOWNSTREAM CG5150 & 1 other INTERGENIC
X	5516888	X_5516888_SNP [dm3] X_5622855_SNP [dm6]	G	A	2.466e^-4	0.552	SYNONYMOUS_CODING l_1_G0045 UPSTREAM mir-3645 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17151290	3L_17151290_SNP [dm3] 3L_17158190_SNP [dm6]	C	G	2.467e^-4	0.552	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12860829	3R_12860829_SNP [dm3] 3R_17035107_SNP [dm6]	T	C	2.469e^-4	0.552	SYNONYMOUS_CODING CG4009	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14222159	2R_14222159_SNP [dm3] 2R_18334654_SNP [dm6]	C	G	2.473e^-4	0.552	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	7746981	3R_7746981_SNP [dm3] 3R_11921259_SNP [dm6]	C	T	2.478e^-4	0.552	INTRON Cad87A
X	6801860	X_6801860_SNP [dm3] X_6907827_SNP [dm6]	A	G	2.484e^-4	0.552	UPSTREAM CG14431 INTERGENIC
3L	2490539	3L_2490539_SNP [dm3] 3L_2490539_SNP [dm6]	G	C	2.488e^-4	0.552	UPSTREAM CG1146 INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6669180	2R_6669180_SNP [dm3] 2R_10781675_SNP [dm6]	T	A	2.490e^-4	0.552	INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13826573	3R_13826573_SNP [dm3] 3R_18000851_SNP [dm6]	A	G	2.491e^-4	0.552	INTRON cpo
3R	19897485	3R_19897485_SNP [dm3] 3R_24071763_SNP [dm6]	T	C	2.491e^-4	0.552	INTRON 4EHP
3R	9289427	3R_9289427_SNP [dm3] 3R_13463705_SNP [dm6]	C	T	2.496e^-4	0.552	UTR_3_PRIME CG14372 DOWNSTREAM mir-252 INTRON CR17025
3R	7169466	3R_7169466_SNP [dm3] 3R_11343744_SNP [dm6]	T	C	2.499e^-4	0.552	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	9774795	2L_9774795_SNP [dm3] 2L_9774795_SNP [dm6]	T	C	2.501e^-4	0.552	NON_SYNONYMOUS_CODING ppk11	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14582960	3L_14582960_SNP [dm3] 3L_14589860_SNP [dm6]	T	A	2.506e^-4	0.552	INTRON HGTX
3L	5020740	3L_5020740_SNP [dm3] 3L_5020740_SNP [dm6]	A	G	2.508e^-4	0.552	INTRON Con
2R	18218753	2R_18218753_SNP [dm3] 2R_22331248_SNP [dm6]	G	T	2.510e^-4	0.552	UPSTREAM pgc INTRON pgc & 1 other
X	15422714	X_15422714_SNP [dm3] X_15528681_SNP [dm6]	C	T	2.510e^-4	0.552	INTRON Ac13E
2R	8912178	2R_8912178_SNP [dm3] 2R_13024673_SNP [dm6]	T	C	2.520e^-4	0.553	INTERGENIC
3R	13165425	3R_13165425_SNP [dm3] 3R_17339703_SNP [dm6]	C	G	2.527e^-4	0.554	INTRON beat-IIa
2L	8301441	2L_8301441_DEL [dm3] 2L_8301441_DEL [dm6]	TT	T	2.531e^-4	0.554	UTR_3_PRIME wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	3398063	2L_3398063_SNP [dm3] 2L_3398063_SNP [dm6]	A	G	2.534e^-4	0.554	UTR_5_PRIME CG34175 UPSTREAM CR44792
3L	5590864	3L_5590864_DEL [dm3] 3L_5597764_DEL [dm6]	AA	A	2.535e^-4	0.554	DOWNSTREAM CG5150 & 1 other INTERGENIC
3L	18498928	3L_18498928_SNP [dm3] 3L_18505828_SNP [dm6]	C	T	2.539e^-4	0.554	INTERGENIC
3R	1115227	3R_1115227_SNP [dm3] 3R_5289505_SNP [dm6]	T	A	2.541e^-4	0.554	INTRON mtd
3R	7747761	3R_7747761_SNP [dm3] 3R_11922039_SNP [dm6]	G	A	2.542e^-4	0.554	INTRON Cad87A
2L	8654661	2L_8654661_DEL [dm3] 2L_8654661_DEL [dm6]	AGGACACTA	A	2.549e^-4	0.554	INTRON Sema-1a
2R	12181409	2R_12181409_SNP [dm3] 2R_16293904_SNP [dm6]	G	T	2.551e^-4	0.554	SYNONYMOUS_CODING CG7747 UPSTREAM Atg9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10017532	2L_10017532_SNP [dm3] 2L_10017532_SNP [dm6]	T	G	2.551e^-4	0.554	UPSTREAM CG13131 INTERGENIC
3R	14292874	3R_14292874_SNP [dm3] 3R_18467152_SNP [dm6]	T	C	2.560e^-4	0.554	INTRON fru
3L	1955023	3L_1955023_SNP [dm3] 3L_1955023_SNP [dm6]	G	A	2.568e^-4	0.554	NON_SYNONYMOUS_CODING mv	TF binding site mE1_TFBS_chinmo
3R	13144663	3R_13144663_SNP [dm3] 3R_17318941_SNP [dm6]	T	A	2.569e^-4	0.554	INTERGENIC
2R	4075479	2R_4075479_SNP [dm3] 2R_8187974_SNP [dm6]	T	C	2.569e^-4	0.554	INTRON LRP1
X	8465172	X_8465172_SNP [dm3] X_8571139_SNP [dm6]	C	T	2.569e^-4	0.554	UTR_3_PRIME spirit UPSTREAM CG12111 DOWNSTREAM Trf4-1	TF binding site BDTNP1_TFBS_da
3L	5960047	3L_5960047_SNP [dm3] 3L_5966947_SNP [dm6]	A	T	2.577e^-4	0.554	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	2626572	3R_2626572_SNP [dm3] 3R_6800850_SNP [dm6]	A	G	2.579e^-4	0.554	INTRON Dfd	TF binding site mE1_TFBS_inv
3L	16925797	3L_16925797_SNP [dm3] 3L_16932697_SNP [dm6]	C	G	2.581e^-4	0.554	NON_SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
3R	14076427	3R_14076427_SNP [dm3] 3R_18250705_SNP [dm6]	A	G	2.582e^-4	0.554	UPSTREAM CG18598 DOWNSTREAM 14-3-3epsilon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24924570	3R_24924570_SNP [dm3] 3R_29098848_SNP [dm6]	G	A	2.583e^-4	0.554	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7900933	2L_7900933_DEL [dm3] 2L_7900933_DEL [dm6]	GTATG	G	2.588e^-4	0.555	INTRON Snoo
3L	12446661	3L_12446661_SNP [dm3] 3L_12453561_SNP [dm6]	A	G	2.596e^-4	0.556	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_Kr
2L	15532922	2L_15532922_SNP [dm3] 2L_15532922_SNP [dm6]	C	T	2.599e^-4	0.556	INTERGENIC
3R	8257691	3R_8257691_SNP [dm3] 3R_12431969_SNP [dm6]	G	C	2.614e^-4	0.556	SYNONYMOUS_CODING Prosalpha2 DOWNSTREAM CG5245 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	4641966	3L_4641966_SNP [dm3] 3L_4641966_SNP [dm6]	T	A	2.619e^-4	0.556	DOWNSTREAM axo INTRON axo
3R	26391752	3R_26391752_SNP [dm3] 3R_30566030_SNP [dm6]	A	T	2.622e^-4	0.556	INTRON tmod
3L	10001766	3L_10001766_SNP [dm3] 3L_10008666_SNP [dm6]	C	T	2.626e^-4	0.556	INTRON dpr6
2R	18557843	2R_18557843_SNP [dm3] 2R_22670338_SNP [dm6]	C	A	2.627e^-4	0.556	UTR_3_PRIME CG13516 UPSTREAM RYBP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_HSA
3R	15325265	3R_15325265_SNP [dm3] 3R_19499543_SNP [dm6]	T	C	2.627e^-4	0.556	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	6812278	3L_6812278_SNP [dm3] 3L_6819178_SNP [dm6]	C	T	2.629e^-4	0.556	INTERGENIC	TF binding site mE1_TFBS_cnc
X	18656120	X_18656120_SNP [dm3] X_18762087_SNP [dm6]	A	G	2.635e^-4	0.556	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14503004	3R_14503004_SNP [dm3] 3R_18677282_SNP [dm6]	A	G	2.637e^-4	0.556	SYNONYMOUS_CODING CG7705 UPSTREAM CG7706	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9629457	3L_9629457_SNP [dm3] 3L_9636357_SNP [dm6]	A	G	2.637e^-4	0.556	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
3R	9275721	3R_9275721_SNP [dm3] 3R_13449999_SNP [dm6]	G	A	2.639e^-4	0.556	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	13274366	2L_13274366_SNP [dm3] 2L_13274366_SNP [dm6]	C	G	2.639e^-4	0.556	SYNONYMOUS_CODING CG44085
3R	21145883	3R_21145883_DEL [dm3] 3R_25320161_DEL [dm6]	ACATA	A	2.639e^-4	0.556	UPSTREAM CG10560 DOWNSTREAM CG10562 INTERGENIC
2R	7421214	2R_7421214_SNP [dm3] 2R_11533709_SNP [dm6]	C	T	2.642e^-4	0.556	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	14960664	3R_14960664_SNP [dm3] 3R_19134942_SNP [dm6]	C	T	2.647e^-4	0.556	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3R	9959677	3R_9959677_SNP [dm3] 3R_14133955_SNP [dm6]	A	G	2.649e^-4	0.556	INTERGENIC
3R	16873212	3R_16873212_SNP [dm3] 3R_21047490_SNP [dm6]	T	A	2.652e^-4	0.556	UTR_3_PRIME CG7079 UPSTREAM CG31207 DOWNSTREAM CG7079
3R	22115678	3R_22115678_SNP [dm3] 3R_26289956_SNP [dm6]	A	T	2.658e^-4	0.556	INTERGENIC
3R	14102751	3R_14102751_SNP [dm3] 3R_18277029_SNP [dm6]	C	T	2.660e^-4	0.556	INTRON eIF-1A
3R	18174376	3R_18174376_SNP [dm3] 3R_22348654_SNP [dm6]	G	T	2.664e^-4	0.556	INTERGENIC
2L	5021823	2L_5021823_SNP [dm3] 2L_5021823_SNP [dm6]	G	A	2.665e^-4	0.556	INTRON vkg
3R	15334264	3R_15334264_SNP [dm3] 3R_19508542_SNP [dm6]	C	T	2.670e^-4	0.556	UPSTREAM Dys INTRON Dys
3L	10001338	3L_10001338_SNP [dm3] 3L_10008238_SNP [dm6]	C	T	2.670e^-4	0.556	INTRON dpr6
X	17741596	X_17741596_SNP [dm3] X_17847563_SNP [dm6]	T	C	2.673e^-4	0.556	SYNONYMOUS_CODING Ucp4A UTR_3_PRIME Ucp4A DOWNSTREAM CG15814	TF binding site mE1_TFBS_chinmo
2L	16013269	2L_16013269_SNP [dm3] 2L_16013269_SNP [dm6]	G	A	2.675e^-4	0.556	INTRON beat-Ic
3L	5958968	3L_5958968_DEL [dm3] 3L_5965868_DEL [dm6]	AA	A	2.691e^-4	0.558	INTERGENIC
3R	2205821	3R_2205821_SNP [dm3] 3R_6380099_SNP [dm6]	C	T	2.691e^-4	0.558	SYNONYMOUS_CODING CG1024 UPSTREAM TfIIFalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	2223663	3R_2223663_SNP [dm3] 3R_6397941_SNP [dm6]	T	G	2.691e^-4	0.558	INTRON Dmtn
2R	11422675	2R_11422675_SNP [dm3] 2R_15535170_SNP [dm6]	G	C	2.703e^-4	0.558	SPLICE_SITE_REGION CG30471 UTR_5_PRIME CG30471
3R	338157	3R_338157_SNP [dm3] 3R_4512435_SNP [dm6]	T	C	2.704e^-4	0.558	INTRON CG34357
3R	5485128	3R_5485128_SNP [dm3] 3R_9659406_SNP [dm6]	G	A	2.704e^-4	0.558	INTRON CG9492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5751032	2L_5751032_SNP [dm3] 2L_5751032_SNP [dm6]	C	A	2.705e^-4	0.558	INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17563128	2L_17563128_SNP [dm3] 2L_17563128_SNP [dm6]	A	T	2.714e^-4	0.559	INTERGENIC
3R	6926765	3R_6926765_SNP [dm3] 3R_11101043_SNP [dm6]	G	T	2.719e^-4	0.559	UPSTREAM CR45579 INTERGENIC
2R	14667034	2R_14667034_SNP [dm3] 2R_18779529_SNP [dm6]	C	T	2.721e^-4	0.559	INTERGENIC
3R	10975535	3R_10975535_SNP [dm3] 3R_15149813_SNP [dm6]	T	C	2.738e^-4	0.559	UPSTREAM Gyc88E INTERGENIC
2L	16541396	2L_16541396_SNP [dm3] 2L_16541396_SNP [dm6]	G	A	2.740e^-4	0.559	INTERGENIC
2L	2506414	2L_2506414_SNP [dm3] 2L_2506414_SNP [dm6]	A	T	2.746e^-4	0.559	DOWNSTREAM CR44607 INTERGENIC
3R	10563894	3R_10563894_INS [dm3] 3R_14738172_INS [dm6]	A	ACTAA	2.748e^-4	0.559	INTRON eff	TF binding site BDTNP1_TFBS_dl
2L	6597426	2L_6597426_SNP [dm3] 2L_6597426_SNP [dm6]	A	G	2.749e^-4	0.559	INTRON CG11319
3L	3274802	3L_3274802_SNP [dm3] 3L_3274802_SNP [dm6]	T	A	2.750e^-4	0.559	INTRON CG14960
X	8470913	X_8470913_SNP [dm3] X_8576880_SNP [dm6]	T	A	2.753e^-4	0.559	INTRON CG12065
2L	12958477	2L_12958477_SNP [dm3] 2L_12958477_SNP [dm6]	G	T	2.755e^-4	0.559	INTERGENIC
3L	4959822	3L_4959822_SNP [dm3] 3L_4959822_SNP [dm6]	C	T	2.762e^-4	0.559	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	7064169	X_7064169_SNP [dm3] X_7170136_SNP [dm6]	G	A	2.764e^-4	0.559	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16928863	2L_16928863_SNP [dm3] 2L_16928863_SNP [dm6]	A	T	2.764e^-4	0.559	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7747873	3R_7747873_SNP [dm3] 3R_11922151_SNP [dm6]	A	C	2.766e^-4	0.559	INTRON Cad87A
X	8327919	X_8327919_SNP [dm3] X_8433886_SNP [dm6]	C	A	2.769e^-4	0.559	UPSTREAM CG32712 DOWNSTREAM CG12125 & 1 other INTERGENIC
3R	16409859	3R_16409859_SNP [dm3] 3R_20584137_SNP [dm6]	A	G	2.775e^-4	0.559	SYNONYMOUS_CODING CG16953	TF binding site mE1_TFBS_sens
X	2607497	X_2607497_SNP [dm3] X_2713464_SNP [dm6]	C	G	2.778e^-4	0.559	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2871564	3L_2871564_SNP [dm3] 3L_2871564_SNP [dm6]	G	A	2.780e^-4	0.559	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad
3R	14308369	3R_14308369_SNP [dm3] 3R_18482647_SNP [dm6]	A	G	2.780e^-4	0.559	INTRON fru
2L	17887328	2L_17887328_SNP [dm3] 2L_17887328_SNP [dm6]	C	T	2.783e^-4	0.559	INTERGENIC
2R	4964342	2R_4964342_SNP [dm3] 2R_9076837_SNP [dm6]	C	A	2.783e^-4	0.559	UTR_3_PRIME ana
3R	21655635	3R_21655635_SNP [dm3] 3R_25829913_SNP [dm6]	A	T	2.784e^-4	0.559	UPSTREAM Mst57Dc DOWNSTREAM Sfp96F & 1 other INTERGENIC
X	8208652	X_8208652_SNP [dm3] X_8314619_SNP [dm6]	G	C	2.790e^-4	0.559	INTRON nAChRalpha3
3R	26178785	3R_26178785_SNP [dm3] 3R_30353063_SNP [dm6]	T	A	2.793e^-4	0.559	INTRON hdc
3R	10128319	3R_10128319_SNP [dm3] 3R_14302597_SNP [dm6]	G	A	2.798e^-4	0.559	DOWNSTREAM CG12207 INTRON CG3259
2R	17786585	2R_17786585_SNP [dm3] 2R_21899080_SNP [dm6]	C	T	2.800e^-4	0.559	INTRON Fili
2R	13752345	2R_13752345_SNP [dm3] 2R_17864840_SNP [dm6]	G	A	2.802e^-4	0.559	NON_SYNONYMOUS_CODING thr	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
X	7064922	X_7064922_INS [dm3] X_7170889_INS [dm6]	A	AT	2.803e^-4	0.559	INTRON CG9650 & 1 other
2R	17466829	2R_17466829_DEL [dm3] 2R_21579324_DEL [dm6]	TGTAAAACTT	T	2.804e^-4	0.559	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12199329	2L_12199329_SNP [dm3] 2L_12199329_SNP [dm6]	G	A	2.808e^-4	0.559	INTRON aret
3R	16406780	3R_16406780_SNP [dm3] 3R_20581058_SNP [dm6]	A	C	2.810e^-4	0.559	DOWNSTREAM Srp14 & 1 other INTRON CG34008	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	12850955	3R_12850955_SNP [dm3] 3R_17025233_SNP [dm6]	T	G	2.812e^-4	0.559	INTRON Pxd
3L	17287060	3L_17287060_SNP [dm3] 3L_17293960_SNP [dm6]	T	G	2.813e^-4	0.559	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8288562	3R_8288562_SNP [dm3] 3R_12462840_SNP [dm6]	C	T	2.814e^-4	0.559	DOWNSTREAM CG12267 INTRON CG5608	TF binding site mE1_TFBS_inv
2R	18769681	2R_18769681_SNP [dm3] 2R_22882158_SNP [dm6]	A	G	2.819e^-4	0.559	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8100732	3L_8100732_SNP [dm3] 3L_8107632_SNP [dm6]	C	T	2.823e^-4	0.559	INTRON Ect4	TF binding site BDTNP1_TFBS_twi
3R	7180854	3R_7180854_SNP [dm3] 3R_11355132_SNP [dm6]	G	C	2.832e^-4	0.559	INTRON pros	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	10037668	3R_10037668_SNP [dm3] 3R_14211946_SNP [dm6]	G	A	2.839e^-4	0.559	INTRON Dop1R1
X	6712031	X_6712031_SNP [dm3] X_6817998_SNP [dm6]	G	T	2.842e^-4	0.559	DOWNSTREAM Nf-YC INTRON iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12859828	3R_12859828_SNP [dm3] 3R_17034106_SNP [dm6]	T	G	2.842e^-4	0.559	DOWNSTREAM CG31268 INTRON CG4009	TF binding site mE1_TFBS_HSA
3L	12539066	3L_12539066_SNP [dm3] 3L_12545966_SNP [dm6]	G	C	2.843e^-4	0.559	INTRON sowah
2L	5304780	2L_5304780_SNP [dm3] 2L_5304780_SNP [dm6]	C	T	2.846e^-4	0.559	UPSTREAM vri INTRON vri	TF binding site BDTNP1_TFBS_dl
3R	10294169	3R_10294169_SNP [dm3] 3R_14468447_SNP [dm6]	A	G	2.847e^-4	0.559	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17603241	X_17603241_SNP [dm3] X_17709208_SNP [dm6]	T	C	2.847e^-4	0.559	SYNONYMOUS_CODING CG8173 UPSTREAM CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19179121	3L_19179121_SNP [dm3] 3L_19186021_SNP [dm6]	T	G	2.848e^-4	0.559	INTRON fz2
3R	19990723	3R_19990723_SNP [dm3] 3R_24165001_SNP [dm6]	C	T	2.851e^-4	0.559	SYNONYMOUS_CODING Apc2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9655187	3R_9655187_SNP [dm3] 3R_13829465_SNP [dm6]	A	C	2.859e^-4	0.559	INTERGENIC
2R	16253788	2R_16253788_SNP [dm3] 2R_20366283_SNP [dm6]	A	T	2.859e^-4	0.559	INTERGENIC
2L	10840397	2L_10840397_SNP [dm3] 2L_10840397_SNP [dm6]	T	C	2.867e^-4	0.559	SYNONYMOUS_CODING CG6700 UPSTREAM mir-4987 DOWNSTREAM mir-4987 EXON mir-4987	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	17595675	2R_17595675_SNP [dm3] 2R_21708170_SNP [dm6]	T	A	2.867e^-4	0.559	UPSTREAM HmgZ DOWNSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11142277	2R_11142277_SNP [dm3] 2R_15254772_SNP [dm6]	T	C	2.871e^-4	0.559	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18121524	2R_18121524_SNP [dm3] 2R_22234019_SNP [dm6]	C	T	2.871e^-4	0.559	INTERGENIC
3R	15330862	3R_15330862_SNP [dm3] 3R_19505140_SNP [dm6]	A	G	2.875e^-4	0.559	SYNONYMOUS_CODING Dys INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11441399	2L_11441399_SNP [dm3] 2L_11441399_SNP [dm6]	G	A	2.875e^-4	0.559	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	4369107	3R_4369107_SNP [dm3] 3R_8543385_SNP [dm6]	T	G	2.885e^-4	0.561	INTERGENIC
3R	10382433	3R_10382433_SNP [dm3] 3R_14556711_SNP [dm6]	T	C	2.891e^-4	0.561	UPSTREAM Pde6 INTRON Pde6
X	21880728	X_21880728_SNP [dm3] X_22478892_SNP [dm6]	G	C	2.891e^-4	0.561	INTRON CG12576
2L	11446526	2L_11446526_SNP [dm3] 2L_11446526_SNP [dm6]	T	A	2.894e^-4	0.561	UPSTREAM salm INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	17607503	X_17607503_SNP [dm3] X_17713470_SNP [dm6]	C	A	2.909e^-4	0.561	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14620444	2R_14620444_SNP [dm3] 2R_18732939_SNP [dm6]	A	C	2.909e^-4	0.561	INTRON Hs3st-A
3R	21103432	3R_21103432_SNP [dm3] 3R_25277710_SNP [dm6]	T	C	2.914e^-4	0.561	UPSTREAM CG10513 DOWNSTREAM CG10514 INTERGENIC	TF binding site mE1_TFBS_cad
X	14065943	X_14065943_SNP [dm3] X_14171910_SNP [dm6]	G	A	2.917e^-4	0.561	SYNONYMOUS_CODING betaNACtes1 DOWNSTREAM CG12480
3L	3274032	3L_3274032_SNP [dm3] 3L_3274032_SNP [dm6]	G	A	2.917e^-4	0.561	INTRON CG14960
X	10210507	X_10210507_SNP [dm3] X_10316474_SNP [dm6]	T	G	2.922e^-4	0.561	INTRON alpha-Man-I
2R	12181415	2R_12181415_SNP [dm3] 2R_16293910_SNP [dm6]	A	G	2.925e^-4	0.561	SYNONYMOUS_CODING CG7747 UPSTREAM Atg9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1597840	3L_1597840_SNP [dm3] 3L_1597840_SNP [dm6]	C	T	2.931e^-4	0.561	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2198573	3L_2198573_SNP [dm3] 3L_2198573_SNP [dm6]	T	C	2.932e^-4	0.561	DOWNSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7968919	3R_7968919_SNP [dm3] 3R_12143197_SNP [dm6]	G	T	2.932e^-4	0.561	INTRON dpr15
3R	12869051	3R_12869051_SNP [dm3] 3R_17043329_SNP [dm6]	C	A	2.932e^-4	0.561	UPSTREAM Patr-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15508368	3L_15508368_INS [dm3] 3L_15515268_INS [dm6]	A	AATATA	2.935e^-4	0.561	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13987942	3R_13987942_SNP [dm3] 3R_18162220_SNP [dm6]	C	G	2.935e^-4	0.561	SYNONYMOUS_CODING CG7218	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19351754	3L_19351754_SNP [dm3] 3L_19358654_SNP [dm6]	T	C	2.938e^-4	0.561	INTRON CG32206	TF binding site BDTNP1_TFBS_twi
3R	15328982	3R_15328982_SNP [dm3] 3R_19503260_SNP [dm6]	C	T	2.942e^-4	0.561	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
2L	17560758	2L_17560758_SNP [dm3] 2L_17560758_SNP [dm6]	A	G	2.945e^-4	0.561	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	7760894	3R_7760894_INS [dm3] 3R_11935172_INS [dm6]	C	CT	2.946e^-4	0.561	INTRON Cad87A
X	5537290	X_5537290_SNP [dm3] X_5643257_SNP [dm6]	A	T	2.952e^-4	0.561	INTRON CG42492
X	8177152	X_8177152_SNP [dm3] X_8283119_SNP [dm6]	A	G	2.954e^-4	0.561	SYNONYMOUS_CODING nAChRalpha3
3L	12693766	3L_12693766_SNP [dm3] 3L_12700666_SNP [dm6]	C	G	2.958e^-4	0.561	INTRON mirr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7307488	3L_7307488_SNP [dm3] 3L_7314388_SNP [dm6]	G	A	2.963e^-4	0.561	INTERGENIC
3L	10980703	3L_10980703_SNP [dm3] 3L_10987603_SNP [dm6]	A	T	2.963e^-4	0.561	INTRON klu
2R	18557493	2R_18557493_SNP [dm3] 2R_22669988_SNP [dm6]	T	C	2.974e^-4	0.562	SYNONYMOUS_CODING CG13516 UPSTREAM RYBP	TF binding site mE1_TFBS_chinmo
3R	19080940	3R_19080940_SNP [dm3] 3R_23255218_SNP [dm6]	A	G	2.975e^-4	0.562	UTR_3_PRIME wda DOWNSTREAM EloA
3R	21030829	3R_21030829_SNP [dm3] 3R_25205107_SNP [dm6]	T	A	2.975e^-4	0.562	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
2R	18557496	2R_18557496_SNP [dm3] 2R_22669991_SNP [dm6]	G	A	2.980e^-4	0.562	SYNONYMOUS_CODING CG13516 UPSTREAM RYBP	TF binding site mE1_TFBS_chinmo
2L	18392527	2L_18392527_SNP [dm3] 2L_18392527_SNP [dm6]	C	G	2.981e^-4	0.562	UTR_3_PRIME Fas3
2R	18625933	2R_18625933_SNP [dm3] 2R_22738428_SNP [dm6]	T	C	2.986e^-4	0.562	INTRON jbug	TF binding site mE1_TFBS_HSA
X	8727882	X_8727882_SNP [dm3] X_8833849_SNP [dm6]	A	C	2.996e^-4	0.564	INTERGENIC
3L	3955618	3L_3955618_SNP [dm3] 3L_3955618_SNP [dm6]	G	A	2.999e^-4	0.564	UTR_3_PRIME CG12605
3R	12903054	3R_12903054_SNP [dm3] 3R_17077332_SNP [dm6]	A	T	3.003e^-4	0.564	INTRON Keap1
3R	5221615	3R_5221615_SNP [dm3] 3R_9395893_SNP [dm6]	A	T	3.005e^-4	0.564	INTERGENIC	TF binding site BDTNP1_TFBS_dl

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.401e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.03359

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	6.6206	0.0365

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2199 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	2.559e^-11	4.801e^-5	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	1.100e^-9	9.492e^-4	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	1.518e^-9	9.492e^-4	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	8235993	3R_8235993_SNP [dm3] 3R_12410271_SNP [dm6]	T	G	4.112e^-9	0.002	SPLICE_SITE_REGION CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	5.009e^-9	0.002	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	1.145e^-8	0.003	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	1.173e^-8	0.003	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	4.351e^-8	0.01	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	17682853	3R_17682853_SNP [dm3] 3R_21857131_SNP [dm6]	A	G	5.240e^-8	0.011	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	8224915	3R_8224915_SNP [dm3] 3R_12399193_SNP [dm6]	A	T	6.633e^-8	0.012	SYNONYMOUS_CODING lig3 UPSTREAM Cyp9f3Psi INTRON CG34402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8234140	3R_8234140_SNP [dm3] 3R_12408418_SNP [dm6]	C	G	9.209e^-8	0.016	NON_SYNONYMOUS_CODING CG5196 UPSTREAM CG5196 DOWNSTREAM CG5167	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	1.341e^-7	0.021	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8234276	3R_8234276_SNP [dm3] 3R_12408554_SNP [dm6]	C	G	2.315e^-7	0.033	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	8219408	3R_8219408_SNP [dm3] 3R_12393686_SNP [dm6]	G	A	2.959e^-7	0.035	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402
3R	8231349	3R_8231349_SNP [dm3] 3R_12405627_SNP [dm6]	T	C	2.999e^-7	0.035	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8216558	3R_8216558_SNP [dm3] 3R_12390836_SNP [dm6]	C	T	3.010e^-7	0.035	UTR_3_PRIME CG10096 & 1 other INTRON CG34402
3R	17682885	3R_17682885_SNP [dm3] 3R_21857163_SNP [dm6]	A	T	3.232e^-7	0.036	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	8164413	3R_8164413_SNP [dm3] 3R_12338691_SNP [dm6]	A	C	3.778e^-7	0.039	INTRON CR44941
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	4.128e^-7	0.041	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8253437	3R_8253437_SNP [dm3] 3R_12427715_SNP [dm6]	C	T	4.583e^-7	0.043	NON_SYNONYMOUS_CODING Sas DOWNSTREAM CG5641	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8234219	3R_8234219_SNP [dm3] 3R_12408497_SNP [dm6]	A	T	5.892e^-7	0.053	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	8234936	3R_8234936_SNP [dm3] 3R_12409214_SNP [dm6]	A	G	7.052e^-7	0.058	UTR_5_PRIME CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	7.575e^-7	0.058	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
2L	12226657	2L_12226657_SNP [dm3] 2L_12226657_SNP [dm6]	G	A	7.618e^-7	0.058	INTRON aret
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	7.790e^-7	0.058	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	6490417	3L_6490417_SNP [dm3] 3L_6497317_SNP [dm6]	T	C	9.489e^-7	0.067	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	9.858e^-7	0.067	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
3R	24599566	3R_24599566_INS [dm3] 3R_28773844_INS [dm6]	T	TT	1.003e^-6	0.067	INTERGENIC
3R	8264461	3R_8264461_SNP [dm3] 3R_12438739_SNP [dm6]	G	A	1.106e^-6	0.07	NON_SYNONYMOUS_CODING CG17207 UPSTREAM Desat1 DOWNSTREAM Desat2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	8235840	3R_8235840_SNP [dm3] 3R_12410118_SNP [dm6]	T	C	1.142e^-6	0.07	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	13349916	2R_13349916_SNP [dm3] 2R_17462411_SNP [dm6]	C	G	1.152e^-6	0.07	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12518599	X_12518599_DEL [dm3] X_12624566_DEL [dm6]	TG	T	1.213e^-6	0.071	INTRON CG15728
2R	10098532	2R_10098532_DEL [dm3] 2R_14211027_DEL [dm6]	TTTGTATCT	T	1.354e^-6	0.075	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8236387	3R_8236387_SNP [dm3] 3R_12410665_SNP [dm6]	G	A	1.362e^-6	0.075	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8349986	3R_8349986_SNP [dm3] 3R_12524264_SNP [dm6]	T	C	1.535e^-6	0.081	INTRON Octbeta3R
3R	17682926	3R_17682926_SNP [dm3] 3R_21857204_SNP [dm6]	C	T	1.549e^-6	0.081	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	14960664	3R_14960664_SNP [dm3] 3R_19134942_SNP [dm6]	C	T	1.706e^-6	0.086	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2L	13249133	2L_13249133_SNP [dm3] 2L_13249133_SNP [dm6]	T	C	1.797e^-6	0.089	NON_SYNONYMOUS_CODING CG16820
3R	8349787	3R_8349787_SNP [dm3] 3R_12524065_SNP [dm6]	C	A	1.934e^-6	0.093	INTRON Octbeta3R
3L	6490574	3L_6490574_SNP [dm3] 3L_6497474_SNP [dm6]	C	T	2.221e^-6	0.104	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	8350023	3R_8350023_SNP [dm3] 3R_12524301_SNP [dm6]	C	A	2.271e^-6	0.104	INTRON Octbeta3R
3R	3550136	3R_3550136_SNP [dm3] 3R_7724414_SNP [dm6]	T	A	2.709e^-6	0.119	UTR_3_PRIME CG2616	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6490554	3L_6490554_SNP [dm3] 3L_6497454_SNP [dm6]	T	C	2.734e^-6	0.119	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	8341839	3R_8341839_DEL [dm3] 3R_12516117_DEL [dm6]	AGGAACTTAAATACACAATT...	A	2.913e^-6	0.124	INTRON Octbeta3R
2L	12226662	2L_12226662_INS [dm3] 2L_12226662_INS [dm6]	G	AA	3.153e^-6	0.131	INTRON aret
3R	2776414	3R_2776414_SNP [dm3] 3R_6950692_SNP [dm6]	G	A	3.284e^-6	0.134	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8233903	3R_8233903_SNP [dm3] 3R_12408181_SNP [dm6]	C	T	3.401e^-6	0.136	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	4040573	3R_4040573_SNP [dm3] 3R_8214851_SNP [dm6]	A	T	3.685e^-6	0.144	INTERGENIC
3R	14960689	3R_14960689_SNP [dm3] 3R_19134967_SNP [dm6]	G	A	4.046e^-6	0.155	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2L	10104398	2L_10104398_SNP [dm3] 2L_10104398_SNP [dm6]	C	T	4.794e^-6	0.18	INTRON CG44153 & 1 other
3L	2273734	3L_2273734_SNP [dm3] 3L_2273734_SNP [dm6]	T	C	5.615e^-6	0.206	UPSTREAM tRNA:CR32303 & 1 other INTERGENIC
X	19003743	X_19003743_SNP [dm3] X_19109710_SNP [dm6]	G	T	5.774e^-6	0.208	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	2670542	3R_2670542_SNP [dm3] 3R_6844820_SNP [dm6]	G	A	5.986e^-6	0.208	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18815170	2L_18815170_SNP [dm3] 2L_18815170_SNP [dm6]	C	G	6.026e^-6	0.208	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13344923	2R_13344923_SNP [dm3] 2R_17457418_SNP [dm6]	A	C	6.109e^-6	0.208	UPSTREAM robls54B & 1 other DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
2R	13713600	2R_13713600_SNP [dm3] 2R_17826095_SNP [dm6]	A	G	6.493e^-6	0.216	INTRON grh	transposable element FlyBase
3R	8280154	3R_8280154_SNP [dm3] 3R_12454432_SNP [dm6]	G	A	6.684e^-6	0.216	INTRON CG18549	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	14647605	3R_14647605_SNP [dm3] 3R_18821883_SNP [dm6]	G	C	6.688e^-6	0.216	INTRON CG18208
3L	16556338	3L_16556338_SNP [dm3] 3L_16563238_SNP [dm6]	T	A	6.861e^-6	0.216	DOWNSTREAM Mipp1 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	13344452	2R_13344452_SNP [dm3] 2R_17456947_SNP [dm6]	A	G	6.976e^-6	0.216	SYNONYMOUS_CODING robl UPSTREAM robls54B & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3R	8562118	3R_8562118_SNP [dm3] 3R_12736396_SNP [dm6]	A	C	7.026e^-6	0.216	INTERGENIC
3L	6064536	3L_6064536_SNP [dm3] 3L_6071436_SNP [dm6]	T	G	7.222e^-6	0.216	UTR_3_PRIME CG42269 UPSTREAM CG6602	TF binding site mE1_TFBS_bab1
3L	5568953	3L_5568953_DEL [dm3] 3L_5575853_DEL [dm6]	CGC	C	7.310e^-6	0.216	UPSTREAM Msr-110 INTRON Msr-110
3L	1444499	3L_1444499_SNP [dm3] 3L_1444499_SNP [dm6]	T	G	7.376e^-6	0.216	INTRON Ptp61F
2L	541774	2L_541774_SNP [dm3] 2L_541774_SNP [dm6]	A	G	7.490e^-6	0.216	SYNONYMOUS_CODING lwr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	8234000	3R_8234000_SNP [dm3] 3R_12408278_SNP [dm6]	A	G	7.671e^-6	0.218	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	4104457	3L_4104457_SNP [dm3] 3L_4104457_SNP [dm6]	G	A	7.783e^-6	0.218	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	13344924	2R_13344924_SNP [dm3] 2R_17457419_SNP [dm6]	G	C	8.025e^-6	0.219	UPSTREAM robls54B & 1 other DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
3R	8237029	3R_8237029_SNP [dm3] 3R_12411307_SNP [dm6]	T	C	8.062e^-6	0.219	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13237887	2L_13237887_INS [dm3] 2L_13237887_INS [dm6]	T	TT	8.487e^-6	0.227	INTRON CG5867
3R	8280116	3R_8280116_SNP [dm3] 3R_12454394_SNP [dm6]	A	C	8.937e^-6	0.236	INTRON CG18549	TF binding site BDTNP1_TFBS_prd
2R	13350610	2R_13350610_SNP [dm3] 2R_17463105_SNP [dm6]	A	G	9.536e^-6	0.248	SYNONYMOUS_CODING CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	10625290	X_10625290_DEL [dm3] X_10731257_DEL [dm6]	AAA	G	1.023e^-5	0.258	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8215726	3R_8215726_SNP [dm3] 3R_12390004_SNP [dm6]	T	C	1.038e^-5	0.258	SYNONYMOUS_CODING CG34402 DOWNSTREAM CG10096 & 1 other
3R	8342670	3R_8342670_DEL [dm3] 3R_12516948_DEL [dm6]	CCGACTGCGC	C	1.056e^-5	0.258	CODON_DELETION Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8349830	3R_8349830_SNP [dm3] 3R_12524108_SNP [dm6]	G	T	1.057e^-5	0.258	INTRON Octbeta3R
3R	23493101	3R_23493101_SNP [dm3] 3R_27667379_SNP [dm6]	C	G	1.061e^-5	0.258	SYNONYMOUS_CODING unc80
3R	8239628	3R_8239628_SNP [dm3] 3R_12413906_SNP [dm6]	A	C	1.087e^-5	0.258	UTR_5_PRIME pps UPSTREAM snmRNA:649 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk
3R	8164613	3R_8164613_SNP [dm3] 3R_12338891_SNP [dm6]	T	A	1.088e^-5	0.258	EXON CR44941
2R	13349884	2R_13349884_DEL [dm3] 2R_17462379_DEL [dm6]	GAG	G	1.154e^-5	0.268	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8233837	3R_8233837_INS [dm3] 3R_12408115_INS [dm6]	T	TGT	1.157e^-5	0.268	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	15636850	3R_15636850_SNP [dm3] 3R_19811128_SNP [dm6]	A	G	1.381e^-5	0.316	INTRON bnl
3R	15354270	3R_15354270_SNP [dm3] 3R_19528548_SNP [dm6]	A	G	1.435e^-5	0.324	INTRON Dys
X	7883552	X_7883552_SNP [dm3] X_7989519_SNP [dm6]	T	C	1.505e^-5	0.334	INTERGENIC
2R	13344958	2R_13344958_SNP [dm3] 2R_17457453_SNP [dm6]	C	T	1.513e^-5	0.334	UPSTREAM CG14478 DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
2L	12226755	2L_12226755_SNP [dm3] 2L_12226755_SNP [dm6]	A	G	1.533e^-5	0.334	INTRON aret
3R	2219719	3R_2219719_SNP [dm3] 3R_6393997_SNP [dm6]	G	C	1.596e^-5	0.344	INTRON Dmtn
3R	8221724	3R_8221724_SNP [dm3] 3R_12396002_SNP [dm6]	G	A	1.635e^-5	0.348	UPSTREAM CG10096 & 1 other DOWNSTREAM Cyp9f3Psi INTRON CG34402
3L	9298307	3L_9298307_SNP [dm3] 3L_9305207_SNP [dm6]	G	T	1.678e^-5	0.352	INTERGENIC
2R	12788320	2R_12788320_SNP [dm3] 2R_16900815_SNP [dm6]	A	C	1.689e^-5	0.352	INTRON inaC
3L	11838216	3L_11838216_SNP [dm3] 3L_11845116_SNP [dm6]	C	G	1.721e^-5	0.352	INTERGENIC
2R	13449183	2R_13449183_SNP [dm3] 2R_17561678_SNP [dm6]	C	A	1.725e^-5	0.352	INTRON Klp54D
3R	8210917	3R_8210917_SNP [dm3] 3R_12385195_SNP [dm6]	T	G	1.772e^-5	0.357	INTRON GstD11
3R	2799335	3R_2799335_SNP [dm3] 3R_6973613_SNP [dm6]	G	A	1.822e^-5	0.362	INTRON Antp	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	735620	3L_735620_SNP [dm3] 3L_735620_SNP [dm6]	G	T	1.863e^-5	0.362	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	4243195	3R_4243195_SNP [dm3] 3R_8417473_SNP [dm6]	G	T	1.869e^-5	0.362	INTRON CG45263
3R	8289146	3R_8289146_SNP [dm3] 3R_12463424_SNP [dm6]	C	A	1.871e^-5	0.362	NON_SYNONYMOUS_CODING CG5608	TF binding site mE1_TFBS_inv
3R	3984938	3R_3984938_SNP [dm3] 3R_8159216_SNP [dm6]	G	A	1.920e^-5	0.366	INTRON grn
3R	10183644	3R_10183644_SNP [dm3] 3R_14357922_SNP [dm6]	C	T	1.939e^-5	0.366	DOWNSTREAM CG31320 INTRON NK7.1
3L	17237883	3L_17237883_SNP [dm3] 3L_17244783_SNP [dm6]	A	G	1.953e^-5	0.366	DOWNSTREAM CG7707 INTERGENIC
3R	17908273	3R_17908273_SNP [dm3] 3R_22082551_SNP [dm6]	C	T	2.023e^-5	0.372	INTRON CG13408
2L	1200718	2L_1200718_SNP [dm3] 2L_1200718_SNP [dm6]	G	C	2.024e^-5	0.372	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
3L	8078005	3L_8078005_SNP [dm3] 3L_8084905_SNP [dm6]	T	C	2.042e^-5	0.372	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
3R	11622361	3R_11622361_SNP [dm3] 3R_15796639_SNP [dm6]	C	T	2.152e^-5	0.383	NON_SYNONYMOUS_CODING nsl1	TF binding site mE1_TFBS_chinmo
X	6195576	X_6195576_SNP [dm3] X_6301543_SNP [dm6]	G	A	2.155e^-5	0.383	UPSTREAM CG12219 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3R	9677291	3R_9677291_SNP [dm3] 3R_13851569_SNP [dm6]	C	T	2.193e^-5	0.383	INTERGENIC
2L	1200721	2L_1200721_SNP [dm3] 2L_1200721_SNP [dm6]	G	A	2.195e^-5	0.383	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2L	12226786	2L_12226786_SNP [dm3] 2L_12226786_SNP [dm6]	T	C	2.225e^-5	0.383	INTRON aret
3R	17912729	3R_17912729_SNP [dm3] 3R_22087007_SNP [dm6]	G	A	2.227e^-5	0.383	UPSTREAM CG5791 & 1 other INTRON CG5778
3R	17908271	3R_17908271_SNP [dm3] 3R_22082549_SNP [dm6]	T	A	2.286e^-5	0.39	INTRON CG13408
2R	13532728	2R_13532728_SNP [dm3] 2R_17645223_SNP [dm6]	C	T	2.425e^-5	0.41	INTERGENIC
2R	6986972	2R_6986972_SNP [dm3] 2R_11099467_SNP [dm6]	A	G	2.474e^-5	0.414	INTRON luna
3R	15636904	3R_15636904_SNP [dm3] 3R_19811182_SNP [dm6]	G	A	2.532e^-5	0.42	INTRON bnl
3L	6490804	3L_6490804_SNP [dm3] 3L_6497704_SNP [dm6]	C	T	2.588e^-5	0.423	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12034576	2L_12034576_SNP [dm3] 2L_12034576_SNP [dm6]	C	T	2.616e^-5	0.423	SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut	TF binding site mE1_TFBS_chinmo
3L	11838208	3L_11838208_SNP [dm3] 3L_11845108_SNP [dm6]	G	A	2.638e^-5	0.423	INTERGENIC
2R	13344993	2R_13344993_SNP [dm3] 2R_17457488_SNP [dm6]	C	G	2.640e^-5	0.423	UPSTREAM CG14478 DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
3R	8215997	3R_8215997_SNP [dm3] 3R_12390275_SNP [dm6]	C	T	2.693e^-5	0.425	DOWNSTREAM CG10096 & 1 other INTRON CG34402
3R	4858700	3R_4858700_SNP [dm3] 3R_9032978_SNP [dm6]	C	T	2.707e^-5	0.425	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18132685	3R_18132685_SNP [dm3] 3R_22306963_SNP [dm6]	G	A	2.720e^-5	0.425	INTERGENIC
3R	10184289	3R_10184289_SNP [dm3] 3R_14358567_SNP [dm6]	T	A	2.741e^-5	0.425	UTR_3_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24598352	3R_24598352_DEL [dm3] 3R_28772630_DEL [dm6]	AA	A	2.813e^-5	0.43	INTERGENIC
3R	8286537	3R_8286537_SNP [dm3] 3R_12460815_SNP [dm6]	C	T	2.830e^-5	0.43	UPSTREAM CG5961 INTRON CG12267	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13325325	3L_13325325_SNP [dm3] 3L_13332225_SNP [dm6]	A	T	2.845e^-5	0.43	INTERGENIC
3R	8390929	3R_8390929_SNP [dm3] 3R_12565207_SNP [dm6]	T	C	2.873e^-5	0.431	INTRON Octbeta2R
2L	8068653	2L_8068653_SNP [dm3] 2L_8068653_SNP [dm6]	C	T	2.955e^-5	0.44	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8164617	3R_8164617_SNP [dm3] 3R_12338895_SNP [dm6]	T	C	3.006e^-5	0.442	EXON CR44941
3L	10227100	3L_10227100_SNP [dm3] 3L_10234000_SNP [dm6]	T	A	3.018e^-5	0.442	INTERGENIC
3R	7655877	3R_7655877_SNP [dm3] 3R_11830155_SNP [dm6]	T	A	3.099e^-5	0.448	INTRON CG6959
3L	5074563	3L_5074563_SNP [dm3] 3L_5074563_SNP [dm6]	T	A	3.107e^-5	0.448	INTRON Con
X	14703879	X_14703879_SNP [dm3] X_14809846_SNP [dm6]	C	T	3.152e^-5	0.451	INTRON rut
X	9474538	X_9474538_SNP [dm3] X_9580505_SNP [dm6]	T	C	3.175e^-5	0.451	UPSTREAM CG32699 DOWNSTREAM CR45540 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10119268	3R_10119268_SNP [dm3] 3R_14293546_SNP [dm6]	G	C	3.201e^-5	0.451	INTRON CG12207
2R	17143620	2R_17143620_SNP [dm3] 2R_21256115_SNP [dm6]	A	G	3.259e^-5	0.456	UTR_5_PRIME Rgk3
3R	8338130	3R_8338130_SNP [dm3] 3R_12512408_SNP [dm6]	G	C	3.312e^-5	0.458	UTR_3_PRIME Octbeta3R DOWNSTREAM Hsp70Bc	TF binding site mE1_TFBS_cad
3R	17919382	3R_17919382_SNP [dm3] 3R_22093660_SNP [dm6]	T	C	3.393e^-5	0.458	INTRON CG5778	TF binding site mE1_TFBS_run
2R	13341699	2R_13341699_SNP [dm3] 2R_17454194_SNP [dm6]	A	G	3.403e^-5	0.458	INTRON CG10764
2L	1200728	2L_1200728_SNP [dm3] 2L_1200728_SNP [dm6]	A	G	3.409e^-5	0.458	START_GAINED CG5011 UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
3L	3436426	3L_3436426_SNP [dm3] 3L_3436426_SNP [dm6]	G	T	3.426e^-5	0.458	INTRON eIF5B
3L	3437617	3L_3437617_SNP [dm3] 3L_3437617_SNP [dm6]	G	A	3.435e^-5	0.458	INTRON eIF5B	TF binding site BDTNP1_TFBS_da
3R	21009368	3R_21009368_SNP [dm3] 3R_25183646_SNP [dm6]	T	A	3.445e^-5	0.458	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	13252060	3L_13252060_SNP [dm3] 3L_13258960_SNP [dm6]	G	A	3.470e^-5	0.458	INTRON caps
3R	8237112	3R_8237112_SNP [dm3] 3R_12411390_SNP [dm6]	C	A	3.524e^-5	0.458	NON_SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6490524	3L_6490524_DEL [dm3] 3L_6497424_DEL [dm6]	AA	A	3.538e^-5	0.458	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16140461	2R_16140461_SNP [dm3] 2R_20252956_SNP [dm6]	C	A	3.562e^-5	0.458	INTRON CG9864
2L	12226645	2L_12226645_SNP [dm3] 2L_12226645_SNP [dm6]	G	A	3.581e^-5	0.458	INTRON aret
3L	6585791	3L_6585791_SNP [dm3] 3L_6592691_SNP [dm6]	G	T	3.589e^-5	0.458	UTR_3_PRIME CG18769 DOWNSTREAM CG18769
2R	10796258	2R_10796258_SNP [dm3] 2R_14908753_SNP [dm6]	C	A	3.646e^-5	0.462	UPSTREAM CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6850138	2R_6850138_INS [dm3] 2R_10962633_INS [dm6]	G	GG	3.820e^-5	0.48	INTERGENIC
3R	8349824	3R_8349824_SNP [dm3] 3R_12524102_SNP [dm6]	G	T	3.836e^-5	0.48	INTRON Octbeta3R
3L	2995276	3L_2995276_SNP [dm3] 3L_2995276_SNP [dm6]	G	A	3.866e^-5	0.48	INTRON CG2113
3R	8243520	3R_8243520_SNP [dm3] 3R_12417798_SNP [dm6]	C	T	3.912e^-5	0.48	SYNONYMOUS_CODING pps
2R	13340579	2R_13340579_DEL [dm3] 2R_17453074_DEL [dm6]	TATCACATA	G	3.921e^-5	0.48	UPSTREAM CG10764 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11980368	3R_11980368_SNP [dm3] 3R_16154646_SNP [dm6]	C	G	3.942e^-5	0.48	UPSTREAM CG6006 INTERGENIC
2L	1200724	2L_1200724_INS [dm3] 2L_1200724_INS [dm6]	A	ATATATATGT	4.096e^-5	0.493	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
3R	20006816	3R_20006816_SNP [dm3] 3R_24181094_SNP [dm6]	A	C	4.137e^-5	0.493	UTR_3_PRIME CG13606 INTRON CG13606
3L	4711327	3L_4711327_SNP [dm3] 3L_4711327_SNP [dm6]	G	A	4.156e^-5	0.493	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_gt mE1_TFBS_inv
3L	4711328	3L_4711328_SNP [dm3] 3L_4711328_SNP [dm6]	T	A	4.156e^-5	0.493	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_gt mE1_TFBS_inv
2R	2819754	2R_2819754_SNP [dm3] 2R_6932249_SNP [dm6]	G	A	4.195e^-5	0.495	SYNONYMOUS_CODING mim INTRON mim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3438005	3L_3438005_SNP [dm3] 3L_3438005_SNP [dm6]	A	T	4.246e^-5	0.498	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3900732	2L_3900732_SNP [dm3] 2L_3900732_SNP [dm6]	T	C	4.388e^-5	0.506	INTRON capu
2L	6361807	2L_6361807_SNP [dm3] 2L_6361807_SNP [dm6]	T	A	4.432e^-5	0.506	DOWNSTREAM CR44778 INTERGENIC
2L	2676031	2L_2676031_SNP [dm3] 2L_2676031_SNP [dm6]	C	T	4.436e^-5	0.506	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2676070	2L_2676070_SNP [dm3] 2L_2676070_SNP [dm6]	T	A	4.436e^-5	0.506	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14222237	2R_14222237_SNP [dm3] 2R_18334732_SNP [dm6]	G	A	4.448e^-5	0.506	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9446772	X_9446772_SNP [dm3] X_9552739_SNP [dm6]	G	A	4.585e^-5	0.515	SYNONYMOUS_CODING l_1_G0320	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	23000704	3R_23000704_DEL [dm3] 3R_27174982_DEL [dm6]	ATGAACCCCAGTTCA...	A	4.704e^-5	0.515	INTRON Ser	TF binding site mE1_TFBS_cad
3L	3438327	3L_3438327_SNP [dm3] 3L_3438327_SNP [dm6]	C	T	4.723e^-5	0.515	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14960640	3R_14960640_SNP [dm3] 3R_19134918_SNP [dm6]	T	A	4.728e^-5	0.515	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3R	2740723	3R_2740723_SNP [dm3] 3R_6915001_SNP [dm6]	G	C	4.754e^-5	0.515	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	12321230	X_12321230_INS [dm3] X_12427197_INS [dm6]	A	AATCTATA	4.788e^-5	0.515	INTERGENIC
2R	6987986	2R_6987986_SNP [dm3] 2R_11100481_SNP [dm6]	T	A	4.808e^-5	0.515	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16163701	2L_16163701_DEL [dm3] 2L_16163701_DEL [dm6]	TGTCTGCGCGGTCA...	G	4.814e^-5	0.515	INTERGENIC
3L	8672946	3L_8672946_SNP [dm3] 3L_8679846_SNP [dm6]	A	T	4.830e^-5	0.515	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	8213528	3R_8213528_SNP [dm3] 3R_12387806_SNP [dm6]	T	C	4.835e^-5	0.515	SYNONYMOUS_CODING CG33098 UPSTREAM CG33098 INTRON CG34402	TF binding site mE1_TFBS_cad
3L	3943567	3L_3943567_SNP [dm3] 3L_3943567_SNP [dm6]	A	G	4.835e^-5	0.515	UTR_5_PRIME CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	3445173	3L_3445173_SNP [dm3] 3L_3445173_SNP [dm6]	A	T	4.867e^-5	0.515	INTRON eIF5B
3R	10180989	3R_10180989_DEL [dm3] 3R_14355267_DEL [dm6]	GTGGGGGAG	G	4.883e^-5	0.515	INTRON NK7.1
3R	10181000	3R_10181000_DEL [dm3] 3R_14355278_DEL [dm6]	TAGGGAA	T	4.925e^-5	0.516	INTRON NK7.1
3R	15615004	3R_15615004_SNP [dm3] 3R_19789282_SNP [dm6]	C	G	4.977e^-5	0.516	UPSTREAM tRNA:V3b:92Bb INTERGENIC
2R	13342641	2R_13342641_SNP [dm3] 2R_17455136_SNP [dm6]	A	G	4.981e^-5	0.516	NON_SYNONYMOUS_CODING CG10764 DOWNSTREAM robls54B
2R	2594268	2R_2594268_INS [dm3] 2R_6706763_INS [dm6]	A	AGTATTA	5.014e^-5	0.517	UPSTREAM CR43611 DOWNSTREAM mir-4975 INTRON CG3409 & 1 other
3L	22601865	3L_22601865_SNP [dm3] 3L_22608765_SNP [dm6]	G	A	5.112e^-5	0.523	INTRON CG14459
3R	2712208	3R_2712208_SNP [dm3] 3R_6886486_SNP [dm6]	C	G	5.185e^-5	0.523	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9552840	3R_9552840_SNP [dm3] 3R_13727118_SNP [dm6]	T	C	5.193e^-5	0.523	INTRON CG34383
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	5.212e^-5	0.523	INTRON Octbeta3R
X	5055846	X_5055846_SNP [dm3] X_5161813_SNP [dm6]	G	A	5.222e^-5	0.523	INTRON rg & 1 other
3R	8286850	3R_8286850_SNP [dm3] 3R_12461128_SNP [dm6]	G	A	5.242e^-5	0.523	SYNONYMOUS_CODING CG12267 UPSTREAM CG5961	TF binding site mE1_TFBS_inv
2R	13351000	2R_13351000_SNP [dm3] 2R_17463495_SNP [dm6]	C	T	5.295e^-5	0.524	SYNONYMOUS_CODING CG14478	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	8222362	3R_8222362_SNP [dm3] 3R_12396640_SNP [dm6]	A	T	5.308e^-5	0.524	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
2R	13342505	2R_13342505_SNP [dm3] 2R_17455000_SNP [dm6]	T	A	5.360e^-5	0.526	DOWNSTREAM robls54B INTRON CG10764
3R	18743119	3R_18743119_SNP [dm3] 3R_22917397_SNP [dm6]	C	A	5.411e^-5	0.528	INTRON klg
3R	10975535	3R_10975535_SNP [dm3] 3R_15149813_SNP [dm6]	T	C	5.469e^-5	0.528	UPSTREAM Gyc88E INTERGENIC
3L	6012222	3L_6012222_SNP [dm3] 3L_6019122_SNP [dm6]	T	G	5.487e^-5	0.528	START_GAINED PVRAP UTR_5_PRIME PVRAP
3R	15592989	3R_15592989_INS [dm3] 3R_19767267_INS [dm6]	A	ATCCTGGCACCCTGGCA...	5.515e^-5	0.528	INTRON GluClalpha
2L	1200707	2L_1200707_SNP [dm3] 2L_1200707_SNP [dm6]	C	G	5.516e^-5	0.528	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2R	13348330	2R_13348330_SNP [dm3] 2R_17460825_SNP [dm6]	A	G	5.658e^-5	0.535	INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	10797514	3R_10797514_SNP [dm3] 3R_14971792_SNP [dm6]	T	G	5.674e^-5	0.535	INTERGENIC
3R	19517818	3R_19517818_SNP [dm3] 3R_23692096_SNP [dm6]	T	C	5.802e^-5	0.535	NON_SYNONYMOUS_CODING CG10254
3R	10797588	3R_10797588_SNP [dm3] 3R_14971866_SNP [dm6]	C	A	5.815e^-5	0.535	INTERGENIC
X	9476185	X_9476185_SNP [dm3] X_9582152_SNP [dm6]	G	A	5.832e^-5	0.535	UPSTREAM CR45540 INTERGENIC
2R	7557879	2R_7557879_SNP [dm3] 2R_11670374_SNP [dm6]	C	T	5.859e^-5	0.535	INTRON Roc2 & 1 other
2R	13349507	2R_13349507_SNP [dm3] 2R_17462002_SNP [dm6]	A	G	5.962e^-5	0.535	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6490131	3L_6490131_SNP [dm3] 3L_6497031_SNP [dm6]	C	A	5.993e^-5	0.535	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3R	8151852	3R_8151852_SNP [dm3] 3R_12326130_SNP [dm6]	C	G	6.027e^-5	0.535	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	18603532	3L_18603532_SNP [dm3] 3L_18610432_SNP [dm6]	G	T	6.041e^-5	0.535	DOWNSTREAM CG18231 INTRON CG4174 & 2 others
3R	19288847	3R_19288847_SNP [dm3] 3R_23463125_SNP [dm6]	C	T	6.076e^-5	0.535	INTRON CG4374
3L	15190922	3L_15190922_SNP [dm3] 3L_15197822_SNP [dm6]	G	A	6.081e^-5	0.535	INTERGENIC
2R	13347749	2R_13347749_SNP [dm3] 2R_17460244_SNP [dm6]	C	T	6.081e^-5	0.535	UPSTREAM CG14478 INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13342501	2R_13342501_SNP [dm3] 2R_17454996_SNP [dm6]	C	T	6.090e^-5	0.535	DOWNSTREAM robls54B INTRON CG10764
3R	10181008	3R_10181008_SNP [dm3] 3R_14355286_SNP [dm6]	G	T	6.113e^-5	0.535	INTRON NK7.1
3R	8168439	3R_8168439_SNP [dm3] 3R_12342717_SNP [dm6]	A	T	6.117e^-5	0.535	DOWNSTREAM CG44956 INTERGENIC
3L	3943565	3L_3943565_SNP [dm3] 3L_3943565_SNP [dm6]	A	G	6.118e^-5	0.535	UTR_5_PRIME CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	14335563	3R_14335563_SNP [dm3] 3R_18509841_SNP [dm6]	T	C	6.121e^-5	0.535	INTRON fru
3R	10797595	3R_10797595_SNP [dm3] 3R_14971873_SNP [dm6]	T	G	6.194e^-5	0.535	INTERGENIC
3R	10119255	3R_10119255_SNP [dm3] 3R_14293533_SNP [dm6]	T	A	6.195e^-5	0.535	INTRON CG12207
3L	15262312	3L_15262312_SNP [dm3] 3L_15269212_SNP [dm6]	T	A	6.248e^-5	0.535	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	15262319	3L_15262319_SNP [dm3] 3L_15269219_SNP [dm6]	C	G	6.248e^-5	0.535	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	8151848	3R_8151848_SNP [dm3] 3R_12326126_SNP [dm6]	T	G	6.250e^-5	0.535	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	13347757	2R_13347757_SNP [dm3] 2R_17460252_SNP [dm6]	T	C	6.372e^-5	0.538	UPSTREAM CG14478 INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	11980357	3R_11980357_SNP [dm3] 3R_16154635_SNP [dm6]	A	T	6.414e^-5	0.538	UPSTREAM CG6006 INTERGENIC
3R	8151847	3R_8151847_SNP [dm3] 3R_12326125_SNP [dm6]	C	T	6.421e^-5	0.538	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	8372946	3R_8372946_SNP [dm3] 3R_12547224_SNP [dm6]	G	C	6.439e^-5	0.538	INTRON Octbeta3R
2R	6988000	2R_6988000_SNP [dm3] 2R_11100495_SNP [dm6]	G	A	6.456e^-5	0.538	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10181011	3R_10181011_SNP [dm3] 3R_14355289_SNP [dm6]	G	A	6.474e^-5	0.538	INTRON NK7.1
3L	9302746	3L_9302746_SNP [dm3] 3L_9309646_SNP [dm6]	T	C	6.485e^-5	0.538	INTERGENIC
3R	10798226	3R_10798226_SNP [dm3] 3R_14972504_SNP [dm6]	T	C	6.537e^-5	0.54	INTERGENIC
2L	12226775	2L_12226775_SNP [dm3] 2L_12226775_SNP [dm6]	A	T	6.586e^-5	0.542	INTRON aret
2R	13005186	2R_13005186_SNP [dm3] 2R_17117681_SNP [dm6]	T	C	6.780e^-5	0.555	DOWNSTREAM Amy-p INTERGENIC
2R	18330106	2R_18330106_SNP [dm3] 2R_22442601_SNP [dm6]	C	T	6.817e^-5	0.555	INTERGENIC
3R	14960570	3R_14960570_SNP [dm3] 3R_19134848_SNP [dm6]	T	G	6.847e^-5	0.555	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2R	13340914	2R_13340914_SNP [dm3] 2R_17453409_SNP [dm6]	T	C	6.864e^-5	0.555	UTR_5_PRIME CG10764 UPSTREAM mthl3
3R	9568631	3R_9568631_SNP [dm3] 3R_13742909_SNP [dm6]	A	G	6.949e^-5	0.559	INTRON CG34383	TF binding site mE1_TFBS_inv
3R	4582064	3R_4582064_DEL [dm3] 3R_8756342_DEL [dm6]	AGTAATACAAGTATCTAAAG...	A	7.035e^-5	0.564	DOWNSTREAM CR44228 INTRON CG11768 & 1 other
2R	13346462	2R_13346462_SNP [dm3] 2R_17458957_SNP [dm6]	G	A	7.102e^-5	0.564	UTR_5_PRIME CG14478 INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	13346507	2R_13346507_SNP [dm3] 2R_17459002_SNP [dm6]	G	T	7.102e^-5	0.564	UTR_5_PRIME CG14478 INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	3943580	3L_3943580_SNP [dm3] 3L_3943580_SNP [dm6]	T	A	7.158e^-5	0.567	UTR_5_PRIME CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	13345018	2R_13345018_SNP [dm3] 2R_17457513_SNP [dm6]	C	T	7.285e^-5	0.574	UPSTREAM CG14478 DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
2L	6842898	2L_6842898_SNP [dm3] 2L_6842898_SNP [dm6]	T	C	7.316e^-5	0.574	INTERGENIC
3L	12247082	3L_12247082_SNP [dm3] 3L_12253982_SNP [dm6]	C	A	7.360e^-5	0.575	INTRON app
3R	10225129	3R_10225129_SNP [dm3] 3R_14399407_SNP [dm6]	A	G	7.419e^-5	0.577	INTRON cv-c
3R	17908266	3R_17908266_SNP [dm3] 3R_22082544_SNP [dm6]	A	T	7.532e^-5	0.583	INTRON CG13408
X	12451652	X_12451652_SNP [dm3] X_12557619_SNP [dm6]	A	T	7.550e^-5	0.583	INTRON CG43921
3R	8350126	3R_8350126_SNP [dm3] 3R_12524404_SNP [dm6]	C	T	7.629e^-5	0.585	INTRON Octbeta3R
3L	22601863	3L_22601863_SNP [dm3] 3L_22608763_SNP [dm6]	C	T	7.703e^-5	0.585	INTRON CG14459
3R	13229904	3R_13229904_SNP [dm3] 3R_17404182_SNP [dm6]	C	T	7.714e^-5	0.585	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
3L	10362687	3L_10362687_SNP [dm3] 3L_10369587_SNP [dm6]	G	T	7.784e^-5	0.585	INTERGENIC
3L	16746853	3L_16746853_INS [dm3] 3L_16753753_INS [dm6]	T	TTCTGCCT	7.792e^-5	0.585	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12474993	2L_12474993_SNP [dm3] 2L_12474993_SNP [dm6]	T	C	7.825e^-5	0.585	INTRON bun
X	6195847	X_6195847_SNP [dm3] X_6301814_SNP [dm6]	C	T	7.837e^-5	0.585	UPSTREAM CG12219 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3R	8213561	3R_8213561_SNP [dm3] 3R_12387839_SNP [dm6]	C	A	7.839e^-5	0.585	SYNONYMOUS_CODING CG33098 UTR_5_PRIME CG33098 INTRON CG34402	TF binding site mE1_TFBS_cad
X	9474701	X_9474701_INS [dm3] X_9580668_INS [dm6]	T	TCTTAAGTTT	7.854e^-5	0.585	UPSTREAM CG32699 DOWNSTREAM CR45540 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	11816548	X_11816548_SNP [dm3] X_11922515_SNP [dm6]	T	A	8.013e^-5	0.593	INTRON Sclp
3R	8204045	3R_8204045_SNP [dm3] 3R_12378323_SNP [dm6]	T	C	8.041e^-5	0.593	UPSTREAM GstD7 DOWNSTREAM GstD6 INTERGENIC
3R	13651689	3R_13651689_SNP [dm3] 3R_17825967_SNP [dm6]	T	A	8.077e^-5	0.593	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12816254	3L_12816254_SNP [dm3] 3L_12823154_SNP [dm6]	C	T	8.110e^-5	0.593	SYNONYMOUS_CODING CG42588
3L	3446240	3L_3446240_SNP [dm3] 3L_3446240_SNP [dm6]	G	A	8.126e^-5	0.593	INTRON eIF5B
2R	17262606	2R_17262606_SNP [dm3] 2R_21375101_SNP [dm6]	G	A	8.160e^-5	0.593	INTRON cv-2
2R	13449198	2R_13449198_SNP [dm3] 2R_17561693_SNP [dm6]	G	T	8.256e^-5	0.595	SPLICE_SITE_REGION Klp54D INTRON Klp54D
2R	11221499	2R_11221499_SNP [dm3] 2R_15333994_SNP [dm6]	C	G	8.295e^-5	0.595	INTRON Hr51	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	810934	3R_810934_SNP [dm3] 3R_4985212_SNP [dm6]	T	C	8.305e^-5	0.595	UPSTREAM CG14662 INTRON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	10752431	3L_10752431_SNP [dm3] 3L_10759331_SNP [dm6]	C	G	8.367e^-5	0.595	INTERGENIC
3R	8279286	3R_8279286_SNP [dm3] 3R_12453564_SNP [dm6]	T	C	8.380e^-5	0.595	DOWNSTREAM CG5509 INTRON CG18549	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	3446384	3L_3446384_SNP [dm3] 3L_3446384_SNP [dm6]	C	T	8.393e^-5	0.595	INTRON eIF5B
2L	7100532	2L_7100532_SNP [dm3] 2L_7100532_SNP [dm6]	A	G	8.412e^-5	0.595	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	2676086	2L_2676086_SNP [dm3] 2L_2676086_SNP [dm6]	T	C	8.469e^-5	0.597	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8159115	3R_8159115_SNP [dm3] 3R_12333393_SNP [dm6]	G	C	8.503e^-5	0.597	INTERGENIC
3R	10425591	3R_10425591_SNP [dm3] 3R_14599869_SNP [dm6]	A	G	8.646e^-5	0.599	INTRON stumps	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18815169	2L_18815169_SNP [dm3] 2L_18815169_SNP [dm6]	A	G	8.647e^-5	0.599	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8154836	3R_8154836_SNP [dm3] 3R_12329114_SNP [dm6]	A	G	8.652e^-5	0.599	UPSTREAM CR45583 INTERGENIC
X	3517989	X_3517989_SNP [dm3] X_3623956_SNP [dm6]	T	A	8.773e^-5	0.599	INTRON AstA-R1
3R	3802600	3R_3802600_INS [dm3] 3R_7976878_INS [dm6]	T	TATGT	8.781e^-5	0.599	INTRON CD98hc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8083034	3R_8083034_SNP [dm3] 3R_12257312_SNP [dm6]	A	T	8.803e^-5	0.599	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	13349374	2R_13349374_SNP [dm3] 2R_17461869_SNP [dm6]	T	C	8.807e^-5	0.599	INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17682806	3R_17682806_SNP [dm3] 3R_21857084_SNP [dm6]	T	C	8.819e^-5	0.599	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	10796547	3R_10796547_SNP [dm3] 3R_14970825_SNP [dm6]	C	T	8.832e^-5	0.599	INTERGENIC
X	21455498	X_21455498_INS [dm3] X_21584471_INS [dm6]	A	ACAGT	8.842e^-5	0.599	DOWNSTREAM CR44711 EXON CR44711
3R	24826640	3R_24826640_SNP [dm3] 3R_29000918_SNP [dm6]	C	A	8.938e^-5	0.603	INTRON wat
3R	8349994	3R_8349994_SNP [dm3] 3R_12524272_SNP [dm6]	C	A	9.013e^-5	0.606	INTRON Octbeta3R
3R	14960618	3R_14960618_SNP [dm3] 3R_19134896_SNP [dm6]	A	C	9.150e^-5	0.608	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2L	1200706	2L_1200706_SNP [dm3] 2L_1200706_SNP [dm6]	C	G	9.209e^-5	0.608	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
3R	9499398	3R_9499398_SNP [dm3] 3R_13673676_SNP [dm6]	A	G	9.229e^-5	0.608	UTR_5_PRIME Task6 INTRON Task6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	3446287	3L_3446287_SNP [dm3] 3L_3446287_SNP [dm6]	T	A	9.258e^-5	0.608	INTRON eIF5B
3L	12825016	3L_12825016_SNP [dm3] 3L_12831916_SNP [dm6]	G	A	9.261e^-5	0.608	SYNONYMOUS_CODING CG10960 INTRON CG10960	TF binding site mE1_TFBS_Trl
X	17488728	X_17488728_SNP [dm3] X_17594695_SNP [dm6]	T	C	9.263e^-5	0.608	INTRON CG12991
3R	14960612	3R_14960612_SNP [dm3] 3R_19134890_SNP [dm6]	C	T	9.272e^-5	0.608	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3L	2186353	3L_2186353_SNP [dm3] 3L_2186353_SNP [dm6]	C	T	9.427e^-5	0.616	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21032478	3L_21032478_SNP [dm3] 3L_21039378_SNP [dm6]	C	T	9.583e^-5	0.623	INTRON siz
3R	2240173	3R_2240173_SNP [dm3] 3R_6414451_SNP [dm6]	T	G	9.597e^-5	0.623	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11137738	2R_11137738_SNP [dm3] 2R_15250233_SNP [dm6]	C	A	9.647e^-5	0.624	INTRON scb	TF binding site mE1_TFBS_cad
X	11555039	X_11555039_SNP [dm3] X_11661006_SNP [dm6]	C	G	9.718e^-5	0.625	INTRON Ptp10D
3R	17908267	3R_17908267_SNP [dm3] 3R_22082545_SNP [dm6]	T	A	9.761e^-5	0.625	INTRON CG13408
3R	13229823	3R_13229823_SNP [dm3] 3R_17404101_SNP [dm6]	A	T	9.812e^-5	0.625	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
2L	1200697	2L_1200697_INS [dm3] 2L_1200697_INS [dm6]	A	AGCGTCCATTA...	9.815e^-5	0.625	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2R	13349894	2R_13349894_SNP [dm3] 2R_17462389_SNP [dm6]	C	T	9.823e^-5	0.625	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7557893	2R_7557893_SNP [dm3] 2R_11670388_SNP [dm6]	G	T	9.986e^-5	0.633	INTRON Roc2 & 1 other
3L	13117506	3L_13117506_SNP [dm3] 3L_13124406_SNP [dm6]	C	T	1.004e^-4	0.634	INTERGENIC
3L	15047911	3L_15047911_SNP [dm3] 3L_15054811_SNP [dm6]	T	A	1.012e^-4	0.634	UTR_5_PRIME CG13463 UPSTREAM CG18649 INTRON Sytbeta
3L	3438746	3L_3438746_SNP [dm3] 3L_3438746_SNP [dm6]	A	T	1.012e^-4	0.634	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	955937	2L_955937_SNP [dm3] 2L_955937_SNP [dm6]	C	A	1.015e^-4	0.634	INTRON CG4341
X	7883640	X_7883640_SNP [dm3] X_7989607_SNP [dm6]	T	A	1.018e^-4	0.634	INTERGENIC
3R	8236417	3R_8236417_SNP [dm3] 3R_12410695_SNP [dm6]	C	T	1.025e^-4	0.637	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9476371	X_9476371_SNP [dm3] X_9582338_SNP [dm6]	T	C	1.034e^-4	0.64	UPSTREAM CR45540 INTERGENIC
2R	4994255	2R_4994255_SNP [dm3] 2R_9106750_SNP [dm6]	A	C	1.037e^-4	0.64	UTR_3_PRIME Vang DOWNSTREAM Pmm45A
3R	2799320	3R_2799320_SNP [dm3] 3R_6973598_SNP [dm6]	G	C	1.050e^-4	0.645	INTRON Antp	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13341445	2R_13341445_SNP [dm3] 2R_17453940_SNP [dm6]	C	T	1.056e^-4	0.645	SPLICE_SITE_REGION CG10764 SYNONYMOUS_CODING CG10764
3L	3043621	3L_3043621_SNP [dm3] 3L_3043621_SNP [dm6]	A	G	1.065e^-4	0.645	SYNONYMOUS_CODING Jafrac2 DOWNSTREAM scramb2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17908276	3R_17908276_SNP [dm3] 3R_22082554_SNP [dm6]	C	T	1.067e^-4	0.645	INTRON CG13408
X	9474680	X_9474680_SNP [dm3] X_9580647_SNP [dm6]	T	C	1.075e^-4	0.645	UPSTREAM CG32699 DOWNSTREAM CR45540 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	16413303	3L_16413303_SNP [dm3] 3L_16420203_SNP [dm6]	G	A	1.075e^-4	0.645	NON_SYNONYMOUS_CODING CG33158 UPSTREAM Aats-tyr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	9986173	3R_9986173_SNP [dm3] 3R_14160451_SNP [dm6]	A	G	1.088e^-4	0.645	UPSTREAM CG31327 INTERGENIC
X	3894156	X_3894156_SNP [dm3] X_4000123_SNP [dm6]	G	A	1.089e^-4	0.645	INTERGENIC
3R	18993416	3R_18993416_SNP [dm3] 3R_23167694_SNP [dm6]	A	G	1.091e^-4	0.645	UPSTREAM Irk1 INTERGENIC
2L	955923	2L_955923_SNP [dm3] 2L_955923_SNP [dm6]	G	T	1.095e^-4	0.645	INTRON CG4341
2R	8936200	2R_8936200_SNP [dm3] 2R_13048695_SNP [dm6]	C	T	1.103e^-4	0.645	DOWNSTREAM CG13324 INTERGENIC
3R	16854539	3R_16854539_SNP [dm3] 3R_21028817_SNP [dm6]	A	G	1.108e^-4	0.645	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
X	7883576	X_7883576_SNP [dm3] X_7989543_SNP [dm6]	G	T	1.113e^-4	0.645	INTERGENIC
X	11150989	X_11150989_SNP [dm3] X_11256956_SNP [dm6]	T	C	1.118e^-4	0.645	INTRON CG44422
2R	13344929	2R_13344929_SNP [dm3] 2R_17457424_SNP [dm6]	G	T	1.119e^-4	0.645	UPSTREAM robls54B & 1 other DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
3R	8236150	3R_8236150_SNP [dm3] 3R_12410428_SNP [dm6]	C	A	1.119e^-4	0.645	INTRON CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8209961	3R_8209961_SNP [dm3] 3R_12384239_SNP [dm6]	A	C	1.124e^-4	0.645	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	9499400	3R_9499400_SNP [dm3] 3R_13673678_SNP [dm6]	G	C	1.127e^-4	0.645	UTR_5_PRIME Task6 INTRON Task6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	10796259	2R_10796259_DEL [dm3] 2R_14908754_DEL [dm6]	TATA	T	1.129e^-4	0.645	UPSTREAM CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8353659	3R_8353659_SNP [dm3] 3R_12527937_SNP [dm6]	C	A	1.130e^-4	0.645	NON_SYNONYMOUS_CODING Hug INTRON Octbeta3R
3L	3444418	3L_3444418_SNP [dm3] 3L_3444418_SNP [dm6]	G	A	1.147e^-4	0.645	INTRON eIF5B	TF binding site BDTNP1_TFBS_da
2L	3903139	2L_3903139_SNP [dm3] 2L_3903139_SNP [dm6]	T	C	1.150e^-4	0.645	UTR_3_PRIME fred UPSTREAM capu
3R	8140211	3R_8140211_SNP [dm3] 3R_12314489_SNP [dm6]	T	C	1.150e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4102584	2L_4102584_SNP [dm3] 2L_4102584_SNP [dm6]	C	A	1.150e^-4	0.645	INTRON ed
3L	9302561	3L_9302561_SNP [dm3] 3L_9309461_SNP [dm6]	T	A	1.160e^-4	0.645	INTERGENIC
2R	4994270	2R_4994270_INS [dm3] 2R_9106765_INS [dm6]	C	CC	1.160e^-4	0.645	UTR_3_PRIME Vang DOWNSTREAM Pmm45A
2R	13347348	2R_13347348_SNP [dm3] 2R_17459843_SNP [dm6]	G	T	1.161e^-4	0.645	UPSTREAM CG14478 INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3R	15480370	3R_15480370_SNP [dm3] 3R_19654648_SNP [dm6]	C	T	1.167e^-4	0.645	SYNONYMOUS_CODING CG6184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14975552	3L_14975552_SNP [dm3] 3L_14982452_SNP [dm6]	T	C	1.169e^-4	0.645	UPSTREAM CG5114 DOWNSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	13873045	X_13873045_SNP [dm3] X_13979012_SNP [dm6]	T	C	1.169e^-4	0.645	INTRON mamo
3R	17908275	3R_17908275_SNP [dm3] 3R_22082553_SNP [dm6]	C	T	1.171e^-4	0.645	INTRON CG13408
2L	10815404	2L_10815404_SNP [dm3] 2L_10815404_SNP [dm6]	A	T	1.171e^-4	0.645	INTRON Nos
3L	12549675	3L_12549675_SNP [dm3] 3L_12556575_SNP [dm6]	A	T	1.172e^-4	0.645	INTRON sowah
2R	19334746	2R_19334746_SNP [dm3] 2R_23447223_SNP [dm6]	C	A	1.175e^-4	0.645	INTRON CG43795
3R	26898189	3R_26898189_SNP [dm3] 3R_31072467_SNP [dm6]	T	C	1.186e^-4	0.645	INTRON Sox100B
2L	2087325	2L_2087325_SNP [dm3] 2L_2087325_SNP [dm6]	A	C	1.193e^-4	0.645	INTRON dpr3
3L	2278086	3L_2278086_SNP [dm3] 3L_2278086_SNP [dm6]	T	G	1.194e^-4	0.645	DOWNSTREAM yellow-g2 INTERGENIC
X	20243053	X_20243053_SNP [dm3] X_20372026_SNP [dm6]	G	A	1.196e^-4	0.645	INTERGENIC
3R	15618461	3R_15618461_INS [dm3] 3R_19792739_INS [dm6]	C	CC	1.203e^-4	0.645	INTERGENIC
3R	4463463	3R_4463463_SNP [dm3] 3R_8637741_SNP [dm6]	G	A	1.204e^-4	0.645	INTERGENIC
3L	13251989	3L_13251989_SNP [dm3] 3L_13258889_SNP [dm6]	A	G	1.205e^-4	0.645	INTRON caps
3R	5043072	3R_5043072_SNP [dm3] 3R_9217350_SNP [dm6]	T	A	1.206e^-4	0.645	INTRON pum	TF binding site mE1_TFBS_HSA
2L	2947944	2L_2947944_SNP [dm3] 2L_2947944_SNP [dm6]	C	T	1.207e^-4	0.645	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_chinmo
3R	8209853	3R_8209853_SNP [dm3] 3R_12384131_SNP [dm6]	T	C	1.210e^-4	0.645	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8209854	3R_8209854_SNP [dm3] 3R_12384132_SNP [dm6]	T	C	1.210e^-4	0.645	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14647540	3R_14647540_SNP [dm3] 3R_18821818_SNP [dm6]	C	T	1.212e^-4	0.645	INTRON CG18208
3R	3553155	3R_3553155_SNP [dm3] 3R_7727433_SNP [dm6]	A	T	1.214e^-4	0.645	INTERGENIC
2R	9134811	2R_9134811_SNP [dm3] 2R_13247306_SNP [dm6]	G	A	1.217e^-4	0.645	INTRON Mp20	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1512607	X_1512607_INS [dm3] X_1618574_INS [dm6]	A	AA	1.220e^-4	0.645	UPSTREAM Mur2B INTRON br & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	2312098	3R_2312098_SNP [dm3] 3R_6486376_SNP [dm6]	C	T	1.223e^-4	0.645	UPSTREAM CG15186 INTRON CG15186
3R	8198454	3R_8198454_SNP [dm3] 3R_12372732_SNP [dm6]	A	G	1.223e^-4	0.645	UPSTREAM GstD3 DOWNSTREAM GstD2 INTERGENIC
3L	22599829	3L_22599829_SNP [dm3] 3L_22606729_SNP [dm6]	C	A	1.224e^-4	0.645	SYNONYMOUS_CODING CG6914 INTRON CG14459	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5056268	X_5056268_SNP [dm3] X_5162235_SNP [dm6]	T	C	1.236e^-4	0.649	INTRON rg & 1 other
X	9476270	X_9476270_SNP [dm3] X_9582237_SNP [dm6]	A	G	1.241e^-4	0.65	UPSTREAM CR45540 INTERGENIC
3R	18132668	3R_18132668_SNP [dm3] 3R_22306946_SNP [dm6]	G	A	1.250e^-4	0.652	INTERGENIC
2R	19179258	2R_19179258_SNP [dm3] 2R_23291735_SNP [dm6]	T	A	1.252e^-4	0.652	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15270541	3L_15270541_SNP [dm3] 3L_15277441_SNP [dm6]	C	T	1.256e^-4	0.653	INTERGENIC
3R	15480100	3R_15480100_SNP [dm3] 3R_19654378_SNP [dm6]	G	A	1.270e^-4	0.658	SYNONYMOUS_CODING CG6184	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	915571	3R_915571_SNP [dm3] 3R_5089849_SNP [dm6]	A	T	1.280e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1238779	2L_1238779_SNP [dm3] 2L_1238779_SNP [dm6]	G	T	1.285e^-4	0.662	INTERGENIC
X	11816240	X_11816240_DEL [dm3] X_11922207_DEL [dm6]	TGTAT	T	1.294e^-4	0.665	INTRON Sclp
2R	13345680	2R_13345680_SNP [dm3] 2R_17458175_SNP [dm6]	G	C	1.303e^-4	0.665	UPSTREAM CG14478 INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18795551	2R_18795551_SNP [dm3] 2R_22908028_SNP [dm6]	C	T	1.306e^-4	0.665	INTRON nahoda	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9476418	X_9476418_SNP [dm3] X_9582385_SNP [dm6]	C	G	1.312e^-4	0.665	UPSTREAM CR45540 INTERGENIC
2L	13100499	2L_13100499_SNP [dm3] 2L_13100499_SNP [dm6]	G	A	1.318e^-4	0.665	INTERGENIC
3R	17727459	3R_17727459_SNP [dm3] 3R_21901737_SNP [dm6]	A	T	1.318e^-4	0.665	INTRON CG6678
2L	11947689	2L_11947689_DEL [dm3] 2L_11947689_DEL [dm6]	AGC	A	1.318e^-4	0.665	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
3L	13169162	3L_13169162_SNP [dm3] 3L_13176062_SNP [dm6]	C	A	1.319e^-4	0.665	INTRON snky
3R	15636807	3R_15636807_SNP [dm3] 3R_19811085_SNP [dm6]	A	T	1.329e^-4	0.668	INTRON bnl
2R	13341554	2R_13341554_SNP [dm3] 2R_17454049_SNP [dm6]	G	T	1.332e^-4	0.668	NON_SYNONYMOUS_CODING CG10764
2L	12645756	2L_12645756_SNP [dm3] 2L_12645756_SNP [dm6]	A	G	1.342e^-4	0.669	INTRON Ref2
3R	8212109	3R_8212109_SNP [dm3] 3R_12386387_SNP [dm6]	T	C	1.343e^-4	0.669	NON_SYNONYMOUS_CODING CG34402 UPSTREAM CG33098 DOWNSTREAM GstD11	TF binding site mE1_TFBS_chinmo
2R	13348920	2R_13348920_SNP [dm3] 2R_17461415_SNP [dm6]	C	T	1.345e^-4	0.669	INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2278080	3L_2278080_SNP [dm3] 3L_2278080_SNP [dm6]	G	C	1.350e^-4	0.67	DOWNSTREAM yellow-g2 INTERGENIC
3R	5658131	3R_5658131_SNP [dm3] 3R_9832409_SNP [dm6]	G	T	1.369e^-4	0.677	INTRON Teh1	TF binding site BDTNP1_TFBS_twi
3L	12641265	3L_12641265_SNP [dm3] 3L_12648165_SNP [dm6]	G	A	1.377e^-4	0.68	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	6362090	2L_6362090_SNP [dm3] 2L_6362090_SNP [dm6]	C	G	1.427e^-4	0.701	DOWNSTREAM CR44778 INTERGENIC
3R	4026628	3R_4026628_SNP [dm3] 3R_8200906_SNP [dm6]	A	G	1.428e^-4	0.701	UPSTREAM CR43303 INTERGENIC	TF binding site mE1_TFBS_cad
2R	13344768	2R_13344768_DEL [dm3] 2R_17457263_DEL [dm6]	AA	A	1.431e^-4	0.701	UPSTREAM robls54B & 1 other DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
3R	14541261	3R_14541261_DEL [dm3] 3R_18715539_DEL [dm6]	TC	T	1.444e^-4	0.705	UTR_3_PRIME VAChT INTRON Cha
X	11497396	X_11497396_SNP [dm3] X_11603363_SNP [dm6]	A	T	1.459e^-4	0.71	NON_SYNONYMOUS_CODING CG2533 INTRON rho-4
3R	25114878	3R_25114878_SNP [dm3] 3R_29289156_SNP [dm6]	G	T	1.464e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8214415	3R_8214415_SNP [dm3] 3R_12388693_SNP [dm6]	T	A	1.465e^-4	0.71	UTR_3_PRIME CG33098 UPSTREAM CG34402 DOWNSTREAM CG33098 INTRON CG34402
3R	27414636	3R_27414636_SNP [dm3] 3R_31588914_SNP [dm6]	T	G	1.472e^-4	0.71	SPLICE_SITE_REGION CG1635 DOWNSTREAM rod INTRON CR45190 & 1 other
3R	2139791	3R_2139791_SNP [dm3] 3R_6314069_SNP [dm6]	C	T	1.472e^-4	0.71	INTRON Osi17
3R	13651637	3R_13651637_SNP [dm3] 3R_17825915_SNP [dm6]	T	A	1.480e^-4	0.711	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19937617	3L_19937617_SNP [dm3] 3L_19944517_SNP [dm6]	C	T	1.483e^-4	0.711	INTRON Ac76E
3R	11128835	3R_11128835_SNP [dm3] 3R_15303113_SNP [dm6]	A	C	1.486e^-4	0.711	INTRON Tm1
2L	9438461	2L_9438461_SNP [dm3] 2L_9438461_SNP [dm6]	C	T	1.490e^-4	0.711	INTRON numb	TF binding site BDTNP1_TFBS_dl
2L	3402841	2L_3402841_DEL [dm3] 2L_3402841_DEL [dm6]	TGGGTAAAACGGT...	T	1.497e^-4	0.711	INTERGENIC
X	12452583	X_12452583_SNP [dm3] X_12558550_SNP [dm6]	A	C	1.506e^-4	0.711	INTRON CG43921
3R	13651675	3R_13651675_DEL [dm3] 3R_17825953_DEL [dm6]	TACTAGCTTCAAA...	T	1.511e^-4	0.711	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6305125	2R_6305125_SNP [dm3] 2R_10417620_SNP [dm6]	A	G	1.511e^-4	0.711	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1200695	2L_1200695_SNP [dm3] 2L_1200695_SNP [dm6]	G	T	1.517e^-4	0.711	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
3L	14705579	3L_14705579_SNP [dm3] 3L_14712479_SNP [dm6]	G	A	1.518e^-4	0.711	INTRON ome
3R	10119234	3R_10119234_SNP [dm3] 3R_14293512_SNP [dm6]	T	G	1.519e^-4	0.711	INTRON CG12207
3R	13655792	3R_13655792_SNP [dm3] 3R_17830070_SNP [dm6]	C	G	1.522e^-4	0.711	INTRON tinc
2L	13238977	2L_13238977_SNP [dm3] 2L_13238977_SNP [dm6]	G	T	1.525e^-4	0.711	INTRON CG5867
2R	10770972	2R_10770972_SNP [dm3] 2R_14883467_SNP [dm6]	C	T	1.529e^-4	0.711	NON_SYNONYMOUS_CODING Cyp6a20
3L	16551859	3L_16551859_SNP [dm3] 3L_16558759_SNP [dm6]	C	T	1.538e^-4	0.714	DOWNSTREAM CG4229 INTERGENIC
3R	9914330	3R_9914330_SNP [dm3] 3R_14088608_SNP [dm6]	A	G	1.548e^-4	0.715	UPSTREAM Npc2b DOWNSTREAM foxo INTERGENIC	TF binding site mE1_TFBS_bab1
2L	13643649	2L_13643649_SNP [dm3] 2L_13643649_SNP [dm6]	C	T	1.553e^-4	0.715	DOWNSTREAM CR44726 INTERGENIC
2L	13227993	2L_13227993_SNP [dm3] 2L_13227993_SNP [dm6]	C	T	1.558e^-4	0.715	SYNONYMOUS_CODING CG16813	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3439602	3L_3439602_SNP [dm3] 3L_3439602_SNP [dm6]	C	T	1.563e^-4	0.715	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	6890916	2L_6890916_SNP [dm3] 2L_6890916_SNP [dm6]	T	C	1.563e^-4	0.715	INTRON Nlg2
3L	15674881	3L_15674881_DEL [dm3] 3L_15681781_DEL [dm6]	AGTCCAA	A	1.570e^-4	0.715	DOWNSTREAM CG7304
3L	17232310	3L_17232310_SNP [dm3] 3L_17239210_SNP [dm6]	G	C	1.571e^-4	0.715	SYNONYMOUS_CODING CG6512 UPSTREAM Rbp6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	15531432	2L_15531432_SNP [dm3] 2L_15531432_SNP [dm6]	T	G	1.572e^-4	0.715	INTERGENIC
2L	1238780	2L_1238780_SNP [dm3] 2L_1238780_SNP [dm6]	C	T	1.581e^-4	0.718	INTERGENIC
3R	13136681	3R_13136681_SNP [dm3] 3R_17310959_SNP [dm6]	A	G	1.585e^-4	0.718	INTERGENIC
2L	10112337	2L_10112337_SNP [dm3] 2L_10112337_SNP [dm6]	T	A	1.597e^-4	0.722	INTRON CG44153 & 1 other
3L	3709625	3L_3709625_SNP [dm3] 3L_3709625_SNP [dm6]	T	C	1.606e^-4	0.723	DOWNSTREAM CR45675 INTERGENIC
2R	14228146	2R_14228146_SNP [dm3] 2R_18340641_SNP [dm6]	G	A	1.616e^-4	0.723	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11665139	3R_11665139_SNP [dm3] 3R_15839417_SNP [dm6]	A	G	1.621e^-4	0.723	UTR_5_PRIME Pbp45 INTRON spn-E	TF binding site mE1_TFBS_cad
3L	10552274	3L_10552274_SNP [dm3] 3L_10559174_SNP [dm6]	T	C	1.621e^-4	0.723	UPSTREAM CG6527 INTRON A2bp1
3L	15249557	3L_15249557_SNP [dm3] 3L_15256457_SNP [dm6]	C	A	1.625e^-4	0.723	INTERGENIC
3R	13884715	3R_13884715_SNP [dm3] 3R_18058993_SNP [dm6]	T	A	1.625e^-4	0.723	INTERGENIC
3L	2189610	3L_2189610_SNP [dm3] 3L_2189610_SNP [dm6]	G	A	1.628e^-4	0.723	SYNONYMOUS_CODING CG5707	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	19502955	2R_19502955_SNP [dm3] 2R_23615432_SNP [dm6]	C	T	1.630e^-4	0.723	UPSTREAM CG4019 INTRON CG17664	TF binding site mE1_TFBS_HSA
3L	2278285	3L_2278285_SNP [dm3] 3L_2278285_SNP [dm6]	C	A	1.634e^-4	0.723	DOWNSTREAM yellow-g2 INTERGENIC	TF binding site mE1_TFBS_inv
2R	5018429	2R_5018429_SNP [dm3] 2R_9130924_SNP [dm6]	T	A	1.645e^-4	0.726	INTRON CG18659	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	16861822	3R_16861822_SNP [dm3] 3R_21036100_SNP [dm6]	C	G	1.653e^-4	0.727	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8930446	2R_8930446_SNP [dm3] 2R_13042941_SNP [dm6]	A	G	1.657e^-4	0.727	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	15431207	X_15431207_SNP [dm3] X_15537174_SNP [dm6]	G	T	1.662e^-4	0.727	INTRON Ac13E
3R	14160874	3R_14160874_SNP [dm3] 3R_18335152_SNP [dm6]	A	G	1.671e^-4	0.727	INTRON CG15803
2L	6358638	2L_6358638_SNP [dm3] 2L_6358638_SNP [dm6]	G	A	1.671e^-4	0.727	UPSTREAM CG9500 EXON CR44777
3L	3445803	3L_3445803_SNP [dm3] 3L_3445803_SNP [dm6]	G	C	1.673e^-4	0.727	INTRON eIF5B
2R	13843718	2R_13843718_SNP [dm3] 2R_17956213_SNP [dm6]	C	T	1.691e^-4	0.727	SYNONYMOUS_CODING PpY-55A DOWNSTREAM CR44418
2R	8938931	2R_8938931_SNP [dm3] 2R_13051426_SNP [dm6]	G	T	1.693e^-4	0.727	INTERGENIC
3R	13815802	3R_13815802_SNP [dm3] 3R_17990080_SNP [dm6]	C	A	1.695e^-4	0.727	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13970328	3R_13970328_SNP [dm3] 3R_18144606_SNP [dm6]	T	C	1.698e^-4	0.727	INTERGENIC
3R	908734	3R_908734_SNP [dm3] 3R_5083012_SNP [dm6]	T	C	1.722e^-4	0.727	UTR_3_PRIME corto DOWNSTREAM corto
3R	10131652	3R_10131652_SNP [dm3] 3R_14305930_SNP [dm6]	G	A	1.724e^-4	0.727	INTRON su_Hw_
2R	13348777	2R_13348777_SNP [dm3] 2R_17461272_SNP [dm6]	G	T	1.725e^-4	0.727	INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	13344670	2R_13344670_SNP [dm3] 2R_17457165_SNP [dm6]	A	G	1.728e^-4	0.727	UPSTREAM robls54B & 1 other DOWNSTREAM robl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	12397062	X_12397062_MNP [dm3] X_12503029_MNP [dm6]	ATG	TAT	1.734e^-4	0.727	INTRON CG2556
3R	3875752	3R_3875752_SNP [dm3] 3R_8050030_SNP [dm6]	G	T	1.736e^-4	0.727	UTR_3_PRIME CG43061 DOWNSTREAM CG43618 INTRON CG43060
2R	5021272	2R_5021272_SNP [dm3] 2R_9133767_SNP [dm6]	C	T	1.736e^-4	0.727	SYNONYMOUS_CODING Hydr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14250306	2L_14250306_SNP [dm3] 2L_14250306_SNP [dm6]	C	A	1.737e^-4	0.727	INTERGENIC
3L	12023626	3L_12023626_SNP [dm3] 3L_12030526_SNP [dm6]	T	C	1.744e^-4	0.727	INTRON rols	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14376264	2L_14376264_SNP [dm3] 2L_14376264_SNP [dm6]	G	C	1.750e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_zfh1
X	10809680	X_10809680_SNP [dm3] X_10915647_SNP [dm6]	C	T	1.751e^-4	0.727	NON_SYNONYMOUS_CODING CG43901 INTRON CG43901	TF binding site mE1_TFBS_chinmo
3R	8255925	3R_8255925_SNP [dm3] 3R_12430203_SNP [dm6]	T	G	1.753e^-4	0.727	SYNONYMOUS_CODING CG5245 UPSTREAM CG5641	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	25809430	3R_25809430_SNP [dm3] 3R_29983708_SNP [dm6]	A	G	1.755e^-4	0.727	UTR_5_PRIME CG7896	TF binding site mE1_TFBS_Trl
3L	5983715	3L_5983715_SNP [dm3] 3L_5990615_SNP [dm6]	A	C	1.755e^-4	0.727	INTERGENIC
2R	5023665	2R_5023665_SNP [dm3] 2R_9136160_SNP [dm6]	C	T	1.756e^-4	0.727	DOWNSTREAM Hydr1 INTRON alc	TF binding site mE1_TFBS_cad
3L	9393298	3L_9393298_SNP [dm3] 3L_9400198_SNP [dm6]	C	A	1.758e^-4	0.727	UPSTREAM CG4080 INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14228205	2R_14228205_SNP [dm3] 2R_18340700_SNP [dm6]	T	C	1.763e^-4	0.727	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13348689	2R_13348689_SNP [dm3] 2R_17461184_SNP [dm6]	C	A	1.764e^-4	0.727	INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	10119384	3R_10119384_SNP [dm3] 3R_14293662_SNP [dm6]	G	A	1.765e^-4	0.727	INTRON CG12207
3L	2187787	3L_2187787_SNP [dm3] 3L_2187787_SNP [dm6]	T	G	1.770e^-4	0.727	DOWNSTREAM CG13810 INTERGENIC
3L	7992100	3L_7992100_SNP [dm3] 3L_7999000_SNP [dm6]	T	C	1.772e^-4	0.727	INTRON nmo
3L	13967250	3L_13967250_SNP [dm3] 3L_13974150_SNP [dm6]	A	G	1.774e^-4	0.727	UTR_5_PRIME Hsc70-1 UPSTREAM Hsc70-1 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13154246	2L_13154246_DEL [dm3] 2L_13154246_DEL [dm6]	ATACTGCATTGA...	A	1.775e^-4	0.727	INTERGENIC
3L	4966906	3L_4966906_SNP [dm3] 3L_4966906_SNP [dm6]	C	T	1.783e^-4	0.727	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13348734	2R_13348734_SNP [dm3] 2R_17461229_SNP [dm6]	G	T	1.784e^-4	0.727	INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	3943569	3L_3943569_SNP [dm3] 3L_3943569_SNP [dm6]	T	G	1.789e^-4	0.727	UTR_5_PRIME CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	8077974	3L_8077974_SNP [dm3] 3L_8084874_SNP [dm6]	C	T	1.794e^-4	0.727	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
2L	10823737	2L_10823737_SNP [dm3] 2L_10823737_SNP [dm6]	C	G	1.798e^-4	0.727	INTRON Nos
X	20368439	X_20368439_SNP [dm3] X_20497412_SNP [dm6]	C	T	1.802e^-4	0.727	INTRON RhoGAP19D
2R	6508172	2R_6508172_SNP [dm3] 2R_10620667_SNP [dm6]	T	C	1.809e^-4	0.727	INTRON CG11883
3L	2190111	3L_2190111_SNP [dm3] 3L_2190111_SNP [dm6]	T	C	1.810e^-4	0.727	SYNONYMOUS_CODING CG5707	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10131669	3R_10131669_SNP [dm3] 3R_14305947_SNP [dm6]	G	A	1.813e^-4	0.727	INTRON su_Hw_
3R	8224594	3R_8224594_SNP [dm3] 3R_12398872_SNP [dm6]	G	A	1.816e^-4	0.727	DOWNSTREAM lig3 INTRON CG34402 EXON Cyp9f3Psi
3L	12641267	3L_12641267_SNP [dm3] 3L_12648167_SNP [dm6]	T	G	1.823e^-4	0.727	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3911350	3L_3911350_SNP [dm3] 3L_3911350_SNP [dm6]	T	G	1.827e^-4	0.727	UTR_3_PRIME Eip63F-1 DOWNSTREAM Eip63F-1
3R	4308215	3R_4308215_SNP [dm3] 3R_8482493_SNP [dm6]	T	C	1.832e^-4	0.727	INTERGENIC
3L	15262039	3L_15262039_SNP [dm3] 3L_15268939_SNP [dm6]	T	C	1.834e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_bab1
X	3006827	X_3006827_SNP [dm3] X_3112794_SNP [dm6]	A	T	1.846e^-4	0.727	INTRON kirre
3L	6107318	3L_6107318_SNP [dm3] 3L_6114218_SNP [dm6]	C	G	1.846e^-4	0.727	INTRON Ets65A
3L	12824999	3L_12824999_SNP [dm3] 3L_12831899_SNP [dm6]	G	C	1.847e^-4	0.727	NON_SYNONYMOUS_CODING CG10960 INTRON CG10960	TF binding site mE1_TFBS_Trl
3R	3541923	3R_3541923_INS [dm3] 3R_7716201_INS [dm6]	C	ATGA	1.849e^-4	0.727	INTERGENIC
2R	13348743	2R_13348743_SNP [dm3] 2R_17461238_SNP [dm6]	T	C	1.862e^-4	0.727	INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	11698058	3R_11698058_SNP [dm3] 3R_15872336_SNP [dm6]	T	C	1.864e^-4	0.727	INTRON CG31183
2L	12226651	2L_12226651_SNP [dm3] 2L_12226651_SNP [dm6]	G	A	1.865e^-4	0.727	INTRON aret
3R	1957864	3R_1957864_SNP [dm3] 3R_6132142_SNP [dm6]	T	C	1.866e^-4	0.727	INTERGENIC
3R	21675658	3R_21675658_SNP [dm3] 3R_25849936_SNP [dm6]	C	A	1.869e^-4	0.727	DOWNSTREAM CG14545 INTERGENIC
X	12452676	X_12452676_SNP [dm3] X_12558643_SNP [dm6]	T	G	1.870e^-4	0.727	INTRON CG43921
2R	12133359	2R_12133359_SNP [dm3] 2R_16245854_SNP [dm6]	G	A	1.872e^-4	0.727	INTRON CngA	TF binding site mE1_TFBS_chinmo
3R	10183666	3R_10183666_SNP [dm3] 3R_14357944_SNP [dm6]	C	T	1.883e^-4	0.73	DOWNSTREAM CG31320 INTRON NK7.1
3L	692028	3L_692028_SNP [dm3] 3L_692028_SNP [dm6]	C	T	1.899e^-4	0.731	SYNONYMOUS_CODING Vti1 DOWNSTREAM RabX6
3R	11980387	3R_11980387_SNP [dm3] 3R_16154665_SNP [dm6]	A	T	1.901e^-4	0.731	UPSTREAM CG6006 INTERGENIC
2L	18314806	2L_18314806_SNP [dm3] 2L_18314806_SNP [dm6]	G	T	1.902e^-4	0.731	UPSTREAM CR44489 INTERGENIC
3R	4885793	3R_4885793_SNP [dm3] 3R_9060071_SNP [dm6]	C	T	1.904e^-4	0.731	SYNONYMOUS_CODING Kdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13343267	2R_13343267_SNP [dm3] 2R_17455762_SNP [dm6]	A	C	1.906e^-4	0.731	UTR_3_PRIME robls54B UPSTREAM robl DOWNSTREAM CG10764
2R	14222340	2R_14222340_SNP [dm3] 2R_18334835_SNP [dm6]	A	G	1.911e^-4	0.731	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9542639	3R_9542639_SNP [dm3] 3R_13716917_SNP [dm6]	C	G	1.918e^-4	0.731	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3L	3943675	3L_3943675_SNP [dm3] 3L_3943675_SNP [dm6]	G	T	1.919e^-4	0.731	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	13340830	2R_13340830_DEL [dm3] 2R_17453325_DEL [dm6]	AA	A	1.921e^-4	0.731	UPSTREAM CG10764 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8204071	3R_8204071_SNP [dm3] 3R_12378349_SNP [dm6]	T	C	1.942e^-4	0.737	UPSTREAM GstD7 DOWNSTREAM GstD6 INTERGENIC
3R	12712308	3R_12712308_SNP [dm3] 3R_16886586_SNP [dm6]	T	G	1.958e^-4	0.74	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	17062951	3R_17062951_SNP [dm3] 3R_21237229_SNP [dm6]	G	T	1.958e^-4	0.74	UPSTREAM e INTERGENIC
3R	12037781	3R_12037781_SNP [dm3] 3R_16212059_SNP [dm6]	G	C	1.966e^-4	0.742	INTERGENIC
X	16008949	X_16008949_INS [dm3] X_16114916_INS [dm6]	T	TT	1.976e^-4	0.743	INTERGENIC
3L	13140472	3L_13140472_SNP [dm3] 3L_13147372_SNP [dm6]	A	G	1.978e^-4	0.743	INTERGENIC
3L	12826516	3L_12826516_SNP [dm3] 3L_12833416_SNP [dm6]	T	C	2.003e^-4	0.745	UPSTREAM CG10960 INTRON CG10960	TF binding site BDTNP1_TFBS_dl
3R	13332524	3R_13332524_SNP [dm3] 3R_17506802_SNP [dm6]	A	G	2.009e^-4	0.745	INTERGENIC
2R	18013795	2R_18013795_SNP [dm3] 2R_22126290_SNP [dm6]	A	G	2.014e^-4	0.745	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad
3R	4362872	3R_4362872_SNP [dm3] 3R_8537150_SNP [dm6]	A	C	2.024e^-4	0.745	INTERGENIC
2R	13441356	2R_13441356_SNP [dm3] 2R_17553851_SNP [dm6]	G	T	2.025e^-4	0.745	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_sens
X	9476378	X_9476378_SNP [dm3] X_9582345_SNP [dm6]	G	A	2.027e^-4	0.745	UPSTREAM CR45540 INTERGENIC
3R	10262727	3R_10262727_SNP [dm3] 3R_14437005_SNP [dm6]	C	A	2.033e^-4	0.745	INTRON cv-c
2L	16504319	2L_16504319_MNP [dm3] 2L_16504319_MNP [dm6]	ATA	CCC	2.034e^-4	0.745	INTRON Tpr2
3R	8275376	3R_8275376_SNP [dm3] 3R_12449654_SNP [dm6]	C	T	2.038e^-4	0.745	SYNONYMOUS_CODING CG18549 DOWNSTREAM CG5538	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11816530	X_11816530_DEL [dm3] X_11922497_DEL [dm6]	AATC	A	2.042e^-4	0.745	INTRON Sclp
2L	8835756	2L_8835756_SNP [dm3] 2L_8835756_SNP [dm6]	T	G	2.042e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	10962491	3L_10962491_SNP [dm3] 3L_10969391_SNP [dm6]	A	G	2.046e^-4	0.745	INTERGENIC
3L	8241341	3L_8241341_SNP [dm3] 3L_8248241_SNP [dm6]	A	G	2.048e^-4	0.745	INTRON Dscam4
X	12321216	X_12321216_SNP [dm3] X_12427183_SNP [dm6]	T	A	2.050e^-4	0.745	INTERGENIC
X	3006822	X_3006822_SNP [dm3] X_3112789_SNP [dm6]	C	T	2.057e^-4	0.745	INTRON kirre
3L	13117513	3L_13117513_SNP [dm3] 3L_13124413_SNP [dm6]	T	A	2.062e^-4	0.745	INTERGENIC
3R	12038404	3R_12038404_SNP [dm3] 3R_16212682_SNP [dm6]	T	G	2.072e^-4	0.745	UPSTREAM CR45642 INTERGENIC
2R	20379114	2R_20379114_SNP [dm3] 2R_24491591_SNP [dm6]	A	C	2.074e^-4	0.745	DOWNSTREAM CG13579 & 1 other INTERGENIC
3R	2313518	3R_2313518_SNP [dm3] 3R_6487796_SNP [dm6]	A	C	2.074e^-4	0.745	INTRON CG15186
2R	13016545	2R_13016545_SNP [dm3] 2R_17129040_SNP [dm6]	C	G	2.074e^-4	0.745	NON_SYNONYMOUS_CODING Cda9
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	2.080e^-4	0.745	INTRON Octbeta3R
3R	9980644	3R_9980644_SNP [dm3] 3R_14154922_SNP [dm6]	C	T	2.084e^-4	0.745	SYNONYMOUS_CODING CG31533 UPSTREAM CR44215
3L	5530809	3L_5530809_SNP [dm3] 3L_5537709_SNP [dm6]	C	T	2.085e^-4	0.745	DOWNSTREAM CG10625 INTERGENIC
2R	2743201	2R_2743201_SNP [dm3] 2R_6855696_SNP [dm6]	A	C	2.086e^-4	0.745	INTERGENIC
3L	12435299	3L_12435299_SNP [dm3] 3L_12442199_SNP [dm6]	C	T	2.087e^-4	0.745	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7415592	2L_7415592_INS [dm3] 2L_7415592_INS [dm6]	C	CTCCACTGCCACTGCC...	2.093e^-4	0.745	INTRON chm
3L	9403286	3L_9403286_SNP [dm3] 3L_9410186_SNP [dm6]	A	T	2.094e^-4	0.745	UTR_5_PRIME CG4022 UPSTREAM CG3689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	3497440	3R_3497440_SNP [dm3] 3R_7671718_SNP [dm6]	C	T	2.098e^-4	0.745	INTRON Nlg1
2R	14279625	2R_14279625_SNP [dm3] 2R_18392120_SNP [dm6]	T	C	2.103e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13815721	3R_13815721_SNP [dm3] 3R_17989999_SNP [dm6]	G	A	2.107e^-4	0.745	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21675654	3R_21675654_SNP [dm3] 3R_25849932_SNP [dm6]	A	G	2.108e^-4	0.745	DOWNSTREAM CG14545 INTERGENIC
3L	6570855	3L_6570855_SNP [dm3] 3L_6577755_SNP [dm6]	A	G	2.110e^-4	0.745	INTRON CG18769 & 1 other
X	12321210	X_12321210_SNP [dm3] X_12427177_SNP [dm6]	A	G	2.116e^-4	0.746	INTERGENIC
X	21454287	X_21454287_SNP [dm3] X_21583260_SNP [dm6]	T	C	2.121e^-4	0.746	UPSTREAM CR44711 INTERGENIC
3R	17683340	3R_17683340_SNP [dm3] 3R_21857618_SNP [dm6]	G	A	2.123e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	10975542	3R_10975542_SNP [dm3] 3R_15149820_SNP [dm6]	A	T	2.136e^-4	0.747	UPSTREAM Gyc88E INTERGENIC
3R	18490552	3R_18490552_DEL [dm3] 3R_22664830_DEL [dm6]	GTT	G	2.143e^-4	0.747	INTRON CG45058	TF binding site mE1_TFBS_chinmo
3L	13172798	3L_13172798_SNP [dm3] 3L_13179698_SNP [dm6]	C	A	2.143e^-4	0.747	INTERGENIC
3R	25607206	3R_25607206_SNP [dm3] 3R_29781484_SNP [dm6]	G	C	2.144e^-4	0.747	INTRON kay
3L	22604519	3L_22604519_SNP [dm3] 3L_22611419_SNP [dm6]	C	T	2.152e^-4	0.749	INTRON CG14459
2R	17155500	2R_17155500_SNP [dm3] 2R_21267995_SNP [dm6]	T	G	2.162e^-4	0.749	UPSTREAM CG30393 INTRON Rgk3
2L	12719777	2L_12719777_SNP [dm3] 2L_12719777_SNP [dm6]	C	A	2.169e^-4	0.749	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26135145	3R_26135145_SNP [dm3] 3R_30309423_SNP [dm6]	T	C	2.169e^-4	0.749	INTRON hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8891789	X_8891789_SNP [dm3] X_8997756_SNP [dm6]	T	C	2.174e^-4	0.749	INTRON rdgA & 1 other
2R	7557872	2R_7557872_SNP [dm3] 2R_11670367_SNP [dm6]	C	T	2.178e^-4	0.749	INTRON Roc2 & 1 other
3R	25161799	3R_25161799_SNP [dm3] 3R_29336077_SNP [dm6]	C	T	2.179e^-4	0.749	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2928864	2L_2928864_SNP [dm3] 2L_2928864_SNP [dm6]	T	G	2.185e^-4	0.749	INTRON lilli
2R	10771095	2R_10771095_SNP [dm3] 2R_14883590_SNP [dm6]	C	T	2.190e^-4	0.749	NON_SYNONYMOUS_CODING Cyp6a20
2L	752508	2L_752508_DEL [dm3] 2L_752508_DEL [dm6]	CC	C	2.205e^-4	0.749	UPSTREAM GABA-B-R3 INTRON GABA-B-R3
3L	3439136	3L_3439136_SNP [dm3] 3L_3439136_SNP [dm6]	T	A	2.205e^-4	0.749	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9128370	2R_9128370_SNP [dm3] 2R_13240865_SNP [dm6]	T	C	2.207e^-4	0.749	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10890962	2L_10890962_DEL [dm3] 2L_10890962_DEL [dm6]	AA	A	2.207e^-4	0.749	INTERGENIC
X	17603241	X_17603241_SNP [dm3] X_17709208_SNP [dm6]	T	C	2.212e^-4	0.749	SYNONYMOUS_CODING CG8173 UPSTREAM CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18993412	3R_18993412_SNP [dm3] 3R_23167690_SNP [dm6]	C	T	2.220e^-4	0.749	UPSTREAM Irk1 INTERGENIC
2R	16772511	2R_16772511_SNP [dm3] 2R_20885006_SNP [dm6]	T	G	2.220e^-4	0.749	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	16757680	3L_16757680_SNP [dm3] 3L_16764580_SNP [dm6]	G	A	2.220e^-4	0.749	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13349948	2R_13349948_SNP [dm3] 2R_17462443_SNP [dm6]	C	A	2.221e^-4	0.749	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16733813	3L_16733813_SNP [dm3] 3L_16740713_SNP [dm6]	T	G	2.229e^-4	0.749	INTERGENIC
3R	20886391	3R_20886391_SNP [dm3] 3R_25060669_SNP [dm6]	G	T	2.230e^-4	0.749	INTRON Unc-13-4B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17747302	3R_17747302_SNP [dm3] 3R_21921580_SNP [dm6]	T	C	2.235e^-4	0.749	INTERGENIC
3L	12833802	3L_12833802_INS [dm3] 3L_12840702_INS [dm6]	T	TT	2.241e^-4	0.749	INTRON CG10960
2L	10687544	2L_10687544_SNP [dm3] 2L_10687544_SNP [dm6]	A	G	2.241e^-4	0.749	UPSTREAM CG7296 INTERGENIC
2L	1626402	2L_1626402_SNP [dm3] 2L_1626402_SNP [dm6]	T	G	2.245e^-4	0.749	UPSTREAM CR44603 INTERGENIC
2R	6989139	2R_6989139_SNP [dm3] 2R_11101634_SNP [dm6]	C	T	2.259e^-4	0.753	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8926920	2R_8926920_SNP [dm3] 2R_13039415_SNP [dm6]	T	C	2.273e^-4	0.756	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	11727403	X_11727403_SNP [dm3] X_11833370_SNP [dm6]	A	T	2.286e^-4	0.757	UTR_3_PRIME rudhira INTRON rudhira
2R	13340503	2R_13340503_SNP [dm3] 2R_17452998_SNP [dm6]	A	T	2.288e^-4	0.757	UPSTREAM CG10764 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10181555	3R_10181555_SNP [dm3] 3R_14355833_SNP [dm6]	A	T	2.291e^-4	0.757	INTRON NK7.1
3R	8232154	3R_8232154_SNP [dm3] 3R_12406432_SNP [dm6]	A	C	2.291e^-4	0.757	UPSTREAM CG5167 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_jumu
2R	20091862	2R_20091862_SNP [dm3] 2R_24204339_SNP [dm6]	G	C	2.296e^-4	0.757	UTR_3_PRIME CG11406 INTRON CG11406
2R	14279638	2R_14279638_SNP [dm3] 2R_18392133_SNP [dm6]	C	T	2.303e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12772428	2R_12772428_SNP [dm3] 2R_16884923_SNP [dm6]	A	C	2.317e^-4	0.76	DOWNSTREAM CG6472 INTRON CG8910
2R	13348764	2R_13348764_SNP [dm3] 2R_17461259_SNP [dm6]	A	T	2.319e^-4	0.76	INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	2189727	3L_2189727_SNP [dm3] 3L_2189727_SNP [dm6]	T	C	2.324e^-4	0.76	SYNONYMOUS_CODING CG5707	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	12627429	X_12627429_INS [dm3] X_12733396_INS [dm6]	A	AAA	2.327e^-4	0.76	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8179482	3R_8179482_DEL [dm3] 3R_12353760_DEL [dm6]	TGGCCGT	T	2.330e^-4	0.76	CODON_DELETION MBD-R2
3L	2062014	3L_2062014_SNP [dm3] 3L_2062014_SNP [dm6]	C	T	2.341e^-4	0.762	INTRON sls
3R	10131637	3R_10131637_SNP [dm3] 3R_14305915_SNP [dm6]	C	T	2.350e^-4	0.764	INTRON su_Hw_
3R	26087341	3R_26087341_SNP [dm3] 3R_30261619_SNP [dm6]	A	T	2.360e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	5154234	2L_5154234_SNP [dm3] 2L_5154234_SNP [dm6]	C	G	2.375e^-4	0.767	INTRON Msp300	TF binding site mE1_TFBS_cad
3L	16755914	3L_16755914_SNP [dm3] 3L_16762814_SNP [dm6]	G	A	2.385e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2273530	3L_2273530_SNP [dm3] 3L_2273530_SNP [dm6]	G	A	2.393e^-4	0.767	UPSTREAM tRNA:CR32303 & 1 other INTERGENIC
3R	20006700	3R_20006700_SNP [dm3] 3R_24180978_SNP [dm6]	C	T	2.397e^-4	0.767	UTR_3_PRIME CG13606 INTRON CG13606
3L	12641259	3L_12641259_INS [dm3] 3L_12648159_INS [dm6]	T	TGTT	2.410e^-4	0.767	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	10552548	3L_10552548_INS [dm3] 3L_10559448_INS [dm6]	A	ATACACACGAGCACACA...	2.413e^-4	0.767	UPSTREAM CG6527 INTRON A2bp1
3L	16230099	3L_16230099_SNP [dm3] 3L_16236999_SNP [dm6]	C	T	2.423e^-4	0.767	UTR_3_PRIME l_3_72Dp UPSTREAM l_3_72Dr
3R	26495299	3R_26495299_SNP [dm3] 3R_30669577_SNP [dm6]	C	G	2.423e^-4	0.767	INTERGENIC
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	2.427e^-4	0.767	DOWNSTREAM CG18109 INTERGENIC
X	12318135	X_12318135_SNP [dm3] X_12424102_SNP [dm6]	A	G	2.429e^-4	0.767	INTERGENIC
3R	801709	3R_801709_DEL [dm3] 3R_4975987_DEL [dm6]	AAGCAGGGCCAGGTACGAAA...	A	2.432e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3L	3569548	3L_3569548_SNP [dm3] 3L_3569548_SNP [dm6]	A	T	2.432e^-4	0.767	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	16863695	3R_16863695_SNP [dm3] 3R_21037973_SNP [dm6]	G	A	2.433e^-4	0.767	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9953449	2L_9953449_SNP [dm3] 2L_9953449_SNP [dm6]	T	A	2.437e^-4	0.767	SYNONYMOUS_CODING CG13126 UPSTREAM CG4709	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10131713	3R_10131713_SNP [dm3] 3R_14305991_SNP [dm6]	G	T	2.441e^-4	0.767	SYNONYMOUS_CODING su_Hw_
X	14703851	X_14703851_INS [dm3] X_14809818_INS [dm6]	T	TGAA	2.443e^-4	0.767	INTRON rut
3R	8358365	3R_8358365_SNP [dm3] 3R_12532643_SNP [dm6]	G	C	2.444e^-4	0.767	INTRON Octbeta3R
3L	11451435	3L_11451435_SNP [dm3] 3L_11458335_SNP [dm6]	C	T	2.446e^-4	0.767	UTR_5_PRIME CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna
2R	6542639	2R_6542639_SNP [dm3] 2R_10655134_SNP [dm6]	T	A	2.448e^-4	0.767	INTERGENIC
3R	3447933	3R_3447933_SNP [dm3] 3R_7622211_SNP [dm6]	G	C	2.450e^-4	0.767	INTRON CG34127
2L	14327063	2L_14327063_SNP [dm3] 2L_14327063_SNP [dm6]	A	G	2.450e^-4	0.767	DOWNSTREAM wb INTRON wb
2L	18450075	2L_18450075_SNP [dm3] 2L_18450075_SNP [dm6]	C	T	2.459e^-4	0.768	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	754911	2L_754911_SNP [dm3] 2L_754911_SNP [dm6]	G	A	2.461e^-4	0.768	INTRON GABA-B-R3
2L	18450187	2L_18450187_SNP [dm3] 2L_18450187_SNP [dm6]	C	A	2.466e^-4	0.768	INTRON bsf	TF binding site mE1_TFBS_cad
3R	10797536	3R_10797536_SNP [dm3] 3R_14971814_SNP [dm6]	T	A	2.472e^-4	0.769	INTERGENIC
3R	13923086	3R_13923086_SNP [dm3] 3R_18097364_SNP [dm6]	C	T	2.497e^-4	0.77	INTRON sr
2R	6082595	2R_6082595_SNP [dm3] 2R_10195090_SNP [dm6]	T	C	2.497e^-4	0.77	INTERGENIC
2L	18608603	2L_18608603_SNP [dm3] 2L_18608603_SNP [dm6]	G	A	2.499e^-4	0.77	SYNONYMOUS_CODING CG10333 DOWNSTREAM Atac2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4653501	3L_4653501_SNP [dm3] 3L_4653501_SNP [dm6]	C	G	2.499e^-4	0.77	INTRON axo
2L	13154214	2L_13154214_SNP [dm3] 2L_13154214_SNP [dm6]	G	T	2.500e^-4	0.77	INTERGENIC
3L	6944180	3L_6944180_SNP [dm3] 3L_6951080_SNP [dm6]	A	G	2.501e^-4	0.77	SYNONYMOUS_CODING CG10077 DOWNSTREAM CG10077	TF binding site mE1_TFBS_inv
2L	10038657	2L_10038657_SNP [dm3] 2L_10038657_SNP [dm6]	T	A	2.503e^-4	0.77	INTRON obst-B
3L	15841774	3L_15841774_SNP [dm3] 3L_15848674_SNP [dm6]	T	C	2.524e^-4	0.772	UTR_3_PRIME pHCl	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18259337	2R_18259337_SNP [dm3] 2R_22371832_SNP [dm6]	C	T	2.531e^-4	0.772	INTRON Liprin-gamma
3L	2380728	3L_2380728_SNP [dm3] 3L_2380728_SNP [dm6]	G	A	2.531e^-4	0.772	INTRON CG45186
3L	7300140	3L_7300140_SNP [dm3] 3L_7307040_SNP [dm6]	A	G	2.536e^-4	0.772	INTRON unc-13-4A
2L	16766136	2L_16766136_SNP [dm3] 2L_16766136_SNP [dm6]	A	G	2.538e^-4	0.772	UPSTREAM Mhc INTERGENIC
3L	4216821	3L_4216821_SNP [dm3] 3L_4216821_SNP [dm6]	G	A	2.540e^-4	0.772	SYNONYMOUS_CODING CG43367 DOWNSTREAM Cpr64Ad
3R	14960491	3R_14960491_SNP [dm3] 3R_19134769_SNP [dm6]	T	A	2.544e^-4	0.772	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2L	14044844	2L_14044844_SNP [dm3] 2L_14044844_SNP [dm6]	C	T	2.549e^-4	0.772	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	10114406	2L_10114406_SNP [dm3] 2L_10114406_SNP [dm6]	T	C	2.553e^-4	0.772	INTRON CG44153 & 1 other
2L	6358438	2L_6358438_SNP [dm3] 2L_6358438_SNP [dm6]	T	C	2.557e^-4	0.772	UPSTREAM CG9500 DOWNSTREAM CR44777 EXON CR44777
3R	27405881	3R_27405881_INS [dm3] 3R_31580159_INS [dm6]	T	TGATCCTTGA	2.566e^-4	0.772	UTR_5_PRIME pygo UPSTREAM rod	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17429397	2R_17429397_SNP [dm3] 2R_21541892_SNP [dm6]	G	A	2.573e^-4	0.772	INTRON Egfr	TF binding site mE1_TFBS_Trl
3R	24484998	3R_24484998_SNP [dm3] 3R_28659276_SNP [dm6]	C	T	2.576e^-4	0.772	INTERGENIC
X	7322810	X_7322810_SNP [dm3] X_7428777_SNP [dm6]	T	G	2.577e^-4	0.772	INTERGENIC
3R	10131638	3R_10131638_SNP [dm3] 3R_14305916_SNP [dm6]	G	T	2.578e^-4	0.772	INTRON su_Hw_
2R	10711850	2R_10711850_DEL [dm3] 2R_14824345_DEL [dm6]	AA	A	2.587e^-4	0.772	EXON CR45329
X	5204852	X_5204852_DEL [dm3] X_5310819_DEL [dm6]	TGAGT	T	2.592e^-4	0.772	UTR_3_PRIME TrxT DOWNSTREAM snf
X	9474233	X_9474233_SNP [dm3] X_9580200_SNP [dm6]	T	A	2.598e^-4	0.772	UPSTREAM CG32699 INTERGENIC	TF binding site mE1_TFBS_cad
3R	3456378	3R_3456378_SNP [dm3] 3R_7630656_SNP [dm6]	C	T	2.603e^-4	0.772	INTRON CG34127
3R	14875492	3R_14875492_SNP [dm3] 3R_19049770_SNP [dm6]	G	T	2.607e^-4	0.772	INTRON cdi	TF binding site mE1_TFBS_sens
X	14455777	X_14455777_SNP [dm3] X_14561744_SNP [dm6]	A	G	2.608e^-4	0.772	INTERGENIC
X	17616651	X_17616651_DEL [dm3] X_17722618_DEL [dm6]	CCATC	C	2.615e^-4	0.772	UPSTREAM CG42684 INTRON CG42684	TF binding site BDTNP1_TFBS_dl
3R	13815756	3R_13815756_DEL [dm3] 3R_17990034_DEL [dm6]	AGTA	A	2.618e^-4	0.772	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18426234	3R_18426234_SNP [dm3] 3R_22600512_SNP [dm6]	A	C	2.627e^-4	0.772	INTRON Efa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14279693	2R_14279693_INS [dm3] 2R_18392188_INS [dm6]	G	GG	2.628e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13449417	2R_13449417_SNP [dm3] 2R_17561912_SNP [dm6]	A	C	2.630e^-4	0.772	SYNONYMOUS_CODING Klp54D
3R	3995000	3R_3995000_SNP [dm3] 3R_8169278_SNP [dm6]	A	T	2.636e^-4	0.772	INTRON grn
2L	9508865	2L_9508865_DEL [dm3] 2L_9508865_DEL [dm6]	CGC	C	2.640e^-4	0.772	INTRON CG33298	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	9676783	3R_9676783_DEL [dm3] 3R_13851061_DEL [dm6]	GGAAAATTAAGCTATGCGAA...	CCC	2.644e^-4	0.772	INTERGENIC
2R	11707578	2R_11707578_SNP [dm3] 2R_15820073_SNP [dm6]	G	A	2.648e^-4	0.772	SYNONYMOUS_CODING CG33465 INTRON tun
3R	20366975	3R_20366975_INS [dm3] 3R_24541253_INS [dm6]	T	TG	2.654e^-4	0.772	SPLICE_SITE_REGION CG5789 INTRON CG5789	TF binding site BDTNP1_TFBS_twi
3R	25607204	3R_25607204_SNP [dm3] 3R_29781482_SNP [dm6]	T	A	2.657e^-4	0.772	INTRON kay
3R	9325681	3R_9325681_SNP [dm3] 3R_13499959_SNP [dm6]	T	A	2.661e^-4	0.772	INTERGENIC
3R	15327350	3R_15327350_SNP [dm3] 3R_19501628_SNP [dm6]	G	T	2.666e^-4	0.772	INTRON Dys	TF binding site mE1_TFBS_HSA
X	3070963	X_3070963_DEL [dm3] X_3176930_DEL [dm6]	AA	A	2.667e^-4	0.772	DOWNSTREAM CG3939 INTRON dnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	27384259	3R_27384259_SNP [dm3] 3R_31558537_SNP [dm6]	T	A	2.671e^-4	0.772	INTRON nyo
3R	15480478	3R_15480478_SNP [dm3] 3R_19654756_SNP [dm6]	G	T	2.673e^-4	0.772	SYNONYMOUS_CODING CG6184	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10853830	2L_10853830_SNP [dm3] 2L_10853830_SNP [dm6]	G	A	2.678e^-4	0.772	DOWNSTREAM Dnz1 INTRON CG43129	TF binding site mE1_TFBS_chinmo
2R	16043604	2R_16043604_SNP [dm3] 2R_20156099_SNP [dm6]	A	T	2.681e^-4	0.772	INTERGENIC
3R	10800520	3R_10800520_SNP [dm3] 3R_14974798_SNP [dm6]	C	T	2.682e^-4	0.772	INTERGENIC
X	4300225	X_4300225_SNP [dm3] X_4406192_SNP [dm6]	T	C	2.685e^-4	0.772	INTRON CR32773	TF binding site mE1_TFBS_chinmo
X	4123978	X_4123978_SNP [dm3] X_4229945_SNP [dm6]	G	T	2.691e^-4	0.772	INTERGENIC
2L	15531442	2L_15531442_SNP [dm3] 2L_15531442_SNP [dm6]	T	C	2.706e^-4	0.772	INTERGENIC
3L	15249616	3L_15249616_MNP [dm3] 3L_15256516_MNP [dm6]	CAT	TTG	2.709e^-4	0.772	INTERGENIC
X	9476412	X_9476412_SNP [dm3] X_9582379_SNP [dm6]	T	A	2.710e^-4	0.772	UPSTREAM CR45540 INTERGENIC
3R	8234973	3R_8234973_SNP [dm3] 3R_12409251_SNP [dm6]	T	A	2.711e^-4	0.772	SPLICE_SITE_REGION CG5196 UTR_5_PRIME CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12037784	3R_12037784_SNP [dm3] 3R_16212062_SNP [dm6]	T	C	2.717e^-4	0.772	INTERGENIC
3L	5984657	3L_5984657_SNP [dm3] 3L_5991557_SNP [dm6]	A	G	2.718e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	2871564	3L_2871564_SNP [dm3] 3L_2871564_SNP [dm6]	G	A	2.720e^-4	0.772	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad
3R	13229876	3R_13229876_SNP [dm3] 3R_17404154_SNP [dm6]	G	A	2.723e^-4	0.772	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
3R	2832427	3R_2832427_SNP [dm3] 3R_7006705_SNP [dm6]	T	C	2.726e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	14960371	3R_14960371_SNP [dm3] 3R_19134649_SNP [dm6]	C	A	2.737e^-4	0.772	UTR_3_PRIME Cyp12a5 UPSTREAM Cyp12a4
3R	19210494	3R_19210494_SNP [dm3] 3R_23384772_SNP [dm6]	A	G	2.746e^-4	0.772	UTR_5_PRIME CG4393	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
X	14453863	X_14453863_SNP [dm3] X_14559830_SNP [dm6]	G	A	2.746e^-4	0.772	INTERGENIC
2R	17163223	2R_17163223_SNP [dm3] 2R_21275718_SNP [dm6]	C	T	2.748e^-4	0.772	INTRON Rgk3
3L	9404563	3L_9404563_SNP [dm3] 3L_9411463_SNP [dm6]	C	G	2.759e^-4	0.772	UPSTREAM CG4022 INTRON CG3689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19122571	2R_19122571_SNP [dm3] 2R_23235048_SNP [dm6]	T	C	2.761e^-4	0.772	INTERGENIC
3R	10386220	3R_10386220_SNP [dm3] 3R_14560498_SNP [dm6]	T	A	2.761e^-4	0.772	UPSTREAM CG14850 & 1 other INTERGENIC
3L	13325132	3L_13325132_SNP [dm3] 3L_13332032_SNP [dm6]	A	G	2.763e^-4	0.772	INTERGENIC
2R	11471261	2R_11471261_SNP [dm3] 2R_15583756_SNP [dm6]	G	A	2.764e^-4	0.772	INTERGENIC
X	15531869	X_15531869_SNP [dm3] X_15637836_SNP [dm6]	C	G	2.765e^-4	0.772	DOWNSTREAM CR44423 INTERGENIC
2R	16574495	2R_16574495_SNP [dm3] 2R_20686990_SNP [dm6]	A	C	2.766e^-4	0.772	UPSTREAM Gr57a INTERGENIC
2R	6987337	2R_6987337_SNP [dm3] 2R_11099832_SNP [dm6]	T	C	2.770e^-4	0.772	START_GAINED luna UTR_5_PRIME luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14958688	2R_14958688_SNP [dm3] 2R_19071183_SNP [dm6]	A	C	2.780e^-4	0.772	INTRON 5-HT1A
3L	5074189	3L_5074189_SNP [dm3] 3L_5074189_SNP [dm6]	C	A	2.781e^-4	0.772	INTRON Con
X	6330521	X_6330521_SNP [dm3] X_6436488_SNP [dm6]	A	G	2.782e^-4	0.772	INTRON CG42340
3L	2268641	3L_2268641_SNP [dm3] 3L_2268641_SNP [dm6]	C	A	2.789e^-4	0.772	UPSTREAM CG32302 DOWNSTREAM obst-I INTERGENIC
2R	10475928	2R_10475928_SNP [dm3] 2R_14588423_SNP [dm6]	C	T	2.795e^-4	0.772	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	2187679	3L_2187679_SNP [dm3] 3L_2187679_SNP [dm6]	G	T	2.796e^-4	0.772	DOWNSTREAM CG13810 INTERGENIC	TF binding site mE1_TFBS_cad
X	14338649	X_14338649_SNP [dm3] X_14444616_SNP [dm6]	A	G	2.798e^-4	0.772	INTRON dpr8
2L	6538674	2L_6538674_SNP [dm3] 2L_6538674_SNP [dm6]	T	G	2.817e^-4	0.776	INTRON eya
3R	8204002	3R_8204002_SNP [dm3] 3R_12378280_SNP [dm6]	A	C	2.831e^-4	0.779	UPSTREAM GstD7 DOWNSTREAM GstD6 INTERGENIC
2L	3395959	2L_3395959_SNP [dm3] 2L_3395959_SNP [dm6]	G	A	2.843e^-4	0.78	INTERGENIC
2R	13449315	2R_13449315_SNP [dm3] 2R_17561810_SNP [dm6]	C	T	2.846e^-4	0.78	SYNONYMOUS_CODING Klp54D
3R	3554261	3R_3554261_SNP [dm3] 3R_7728539_SNP [dm6]	G	A	2.855e^-4	0.78	INTERGENIC
3L	3621316	3L_3621316_SNP [dm3] 3L_3621316_SNP [dm6]	G	A	2.864e^-4	0.78	UPSTREAM CG14974 INTERGENIC
3R	8140216	3R_8140216_SNP [dm3] 3R_12314494_SNP [dm6]	A	G	2.866e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3935450	X_3935450_DEL [dm3] X_4041417_DEL [dm6]	GTGG	G	2.867e^-4	0.78	INTERGENIC
X	3935676	X_3935676_SNP [dm3] X_4041643_SNP [dm6]	G	A	2.867e^-4	0.78	INTERGENIC
X	12321211	X_12321211_SNP [dm3] X_12427178_SNP [dm6]	C	T	2.874e^-4	0.781	INTERGENIC
3R	15814105	3R_15814105_SNP [dm3] 3R_19988383_SNP [dm6]	A	G	2.882e^-4	0.782	INTRON Hs6st	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9654654	3R_9654654_SNP [dm3] 3R_13828932_SNP [dm6]	T	A	2.888e^-4	0.782	UPSTREAM Mst87F DOWNSTREAM CR43300 INTERGENIC
3R	19020661	3R_19020661_SNP [dm3] 3R_23194939_SNP [dm6]	T	G	2.897e^-4	0.782	INTRON cnc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	10144428	3L_10144428_SNP [dm3] 3L_10151328_SNP [dm6]	G	A	2.905e^-4	0.782	UPSTREAM CG8072 DOWNSTREAM snoRNA:MeU2-A31 INTRON dpr10
3R	19651325	3R_19651325_SNP [dm3] 3R_23825603_SNP [dm6]	A	T	2.907e^-4	0.782	UPSTREAM snRNA:U1:95Cc INTRON CG34355 EXON CR43285	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	16230092	3L_16230092_SNP [dm3] 3L_16236992_SNP [dm6]	T	A	2.918e^-4	0.782	UTR_3_PRIME l_3_72Dp UPSTREAM l_3_72Dr
3R	18323116	3R_18323116_DEL [dm3] 3R_22497394_DEL [dm6]	TT	T	2.920e^-4	0.782	INTRON Octbeta1R
3L	9403171	3L_9403171_SNP [dm3] 3L_9410071_SNP [dm6]	A	G	2.926e^-4	0.782	UTR_5_PRIME CG4022 UPSTREAM CG3689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17181050	3L_17181050_SNP [dm3] 3L_17187950_SNP [dm6]	G	A	2.934e^-4	0.782	INTRON Rbp6
3L	13172794	3L_13172794_INS [dm3] 3L_13179694_INS [dm6]	T	TTATATTATGTGAAAACATT...	2.935e^-4	0.782	INTERGENIC
3R	1756602	3R_1756602_SNP [dm3] 3R_5930880_SNP [dm6]	A	G	2.939e^-4	0.782	INTRON CG34113
2L	11199302	2L_11199302_SNP [dm3] 2L_11199302_SNP [dm6]	A	T	2.940e^-4	0.782	INTRON Ca-beta
2R	9666689	2R_9666689_SNP [dm3] 2R_13779184_SNP [dm6]	A	G	2.943e^-4	0.782	SYNONYMOUS_CODING S-Lap7 INTRON Cpr50Ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3469700	3R_3469700_SNP [dm3] 3R_7643978_SNP [dm6]	T	A	2.943e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5516801	X_5516801_SNP [dm3] X_5622768_SNP [dm6]	G	T	2.944e^-4	0.782	SYNONYMOUS_CODING l_1_G0045 UPSTREAM mir-3645 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	20149989	X_20149989_SNP [dm3] X_20278963_SNP [dm6]	C	T	2.957e^-4	0.782	INTERGENIC
2L	4194436	2L_4194436_SNP [dm3] 2L_4194436_SNP [dm6]	T	G	2.957e^-4	0.782	INTRON CG3714
X	5879468	X_5879468_SNP [dm3] X_5985435_SNP [dm6]	T	C	2.961e^-4	0.782	INTRON Grip
X	5603420	X_5603420_SNP [dm3] X_5709387_SNP [dm6]	A	G	2.970e^-4	0.782	SYNONYMOUS_CODING CG33080 DOWNSTREAM CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	17045544	3R_17045544_SNP [dm3] 3R_21219822_SNP [dm6]	A	C	2.970e^-4	0.782	SYNONYMOUS_CODING Oga	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	7870249	3R_7870249_DEL [dm3] 3R_12044527_DEL [dm6]	AA	A	2.972e^-4	0.782	INTERGENIC
X	14703919	X_14703919_SNP [dm3] X_14809886_SNP [dm6]	T	A	2.972e^-4	0.782	INTRON rut
3R	26999957	3R_26999957_DEL [dm3] 3R_31174235_DEL [dm6]	CTCTGGCG	C	2.973e^-4	0.782	INTRON Gycbeta100B
X	5603414	X_5603414_SNP [dm3] X_5709381_SNP [dm6]	A	G	2.978e^-4	0.782	SYNONYMOUS_CODING CG33080 DOWNSTREAM CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	18932255	2R_18932255_SNP [dm3] 2R_23044732_SNP [dm6]	C	A	2.984e^-4	0.782	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	11852673	X_11852673_SNP [dm3] X_11958640_SNP [dm6]	G	T	2.991e^-4	0.782	INTRON cac
3R	13815872	3R_13815872_SNP [dm3] 3R_17990150_SNP [dm6]	G	A	2.991e^-4	0.782	INTRON cpo	TF binding site mE1_TFBS_inv
3R	16895686	3R_16895686_SNP [dm3] 3R_21069964_SNP [dm6]	T	A	3.009e^-4	0.782	DOWNSTREAM r-l & 1 other INTRON AnxB9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2R	16052972	2R_16052972_SNP [dm3] 2R_20165467_SNP [dm6]	C	A	3.009e^-4	0.782	INTERGENIC
X	9384462	X_9384462_SNP [dm3] X_9490429_SNP [dm6]	C	T	3.010e^-4	0.782	INTRON mgl
2R	12273111	2R_12273111_SNP [dm3] 2R_16385606_SNP [dm6]	T	C	3.010e^-4	0.782	UTR_3_PRIME CG43187 UPSTREAM Sema-2b
3R	8028018	3R_8028018_SNP [dm3] 3R_12202296_SNP [dm6]	G	A	3.011e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_inv
X	3935456	X_3935456_SNP [dm3] X_4041423_SNP [dm6]	T	C	3.014e^-4	0.782	INTERGENIC
2R	10994806	2R_10994806_SNP [dm3] 2R_15107301_SNP [dm6]	T	C	3.020e^-4	0.782	INTERGENIC
X	5671591	X_5671591_SNP [dm3] X_5777558_SNP [dm6]	A	G	3.024e^-4	0.782	SYNONYMOUS_CODING CG3108 UPSTREAM CG42264 INTRON CG42699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9476782	X_9476782_SNP [dm3] X_9582749_SNP [dm6]	C	T	3.028e^-4	0.782	UPSTREAM CR45540 INTERGENIC
3R	2169004	3R_2169004_SNP [dm3] 3R_6343282_SNP [dm6]	A	G	3.033e^-4	0.782	NON_SYNONYMOUS_CODING CG10298 UPSTREAM CG17919 DOWNSTREAM CG17917
3R	7870245	3R_7870245_SNP [dm3] 3R_12044523_SNP [dm6]	G	C	3.045e^-4	0.783	INTERGENIC
X	4044796	X_4044796_SNP [dm3] X_4150763_SNP [dm6]	G	A	3.046e^-4	0.783	INTRON Fas2
X	2757730	X_2757730_SNP [dm3] X_2863697_SNP [dm6]	T	A	3.055e^-4	0.783	INTRON kirre
2R	9134810	2R_9134810_SNP [dm3] 2R_13247305_SNP [dm6]	G	A	3.064e^-4	0.783	INTRON Mp20	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3397472	3R_3397472_SNP [dm3] 3R_7571750_SNP [dm6]	T	A	3.066e^-4	0.783	UTR_3_PRIME CG34127
3R	26646268	3R_26646268_SNP [dm3] 3R_30820546_SNP [dm6]	T	G	3.067e^-4	0.783	INTRON cindr	TF binding site BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	2993393	3L_2993393_SNP [dm3] 3L_2993393_SNP [dm6]	T	A	3.073e^-4	0.783	INTERGENIC
2L	10459141	2L_10459141_SNP [dm3] 2L_10459141_SNP [dm6]	T	C	3.079e^-4	0.783	SPLICE_SITE_REGION LM408 INTRON LM408	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15480055	3R_15480055_SNP [dm3] 3R_19654333_SNP [dm6]	A	G	3.079e^-4	0.783	SYNONYMOUS_CODING CG6184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7134526	2R_7134526_SNP [dm3] 2R_11247021_SNP [dm6]	T	C	3.082e^-4	0.783	DOWNSTREAM CR30029 INTERGENIC
3R	10119233	3R_10119233_SNP [dm3] 3R_14293511_SNP [dm6]	C	T	3.084e^-4	0.783	INTRON CG12207
3R	8084874	3R_8084874_SNP [dm3] 3R_12259152_SNP [dm6]	T	A	3.087e^-4	0.783	INTRON CG44037 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14964580	2R_14964580_SNP [dm3] 2R_19077075_SNP [dm6]	C	T	3.098e^-4	0.783	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
2R	14965135	2R_14965135_SNP [dm3] 2R_19077630_SNP [dm6]	C	T	3.098e^-4	0.783	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
3L	13172800	3L_13172800_SNP [dm3] 3L_13179700_SNP [dm6]	T	C	3.099e^-4	0.783	INTERGENIC
3R	12325612	3R_12325612_SNP [dm3] 3R_16499890_SNP [dm6]	T	G	3.112e^-4	0.784	SYNONYMOUS_CODING decay UPSTREAM Gr89a
3R	13489449	3R_13489449_SNP [dm3] 3R_17663727_SNP [dm6]	G	T	3.117e^-4	0.784	SYNONYMOUS_CODING CG14322
X	3918672	X_3918672_SNP [dm3] X_4024639_SNP [dm6]	A	G	3.119e^-4	0.784	INTERGENIC
X	10621309	X_10621309_SNP [dm3] X_10727276_SNP [dm6]	A	T	3.126e^-4	0.784	INTRON CG32676
X	20933530	X_20933530_SNP [dm3] X_21062503_SNP [dm6]	A	T	3.132e^-4	0.784	UTR_3_PRIME CG32512 INTRON bves
X	21099460	X_21099460_DEL [dm3] X_21228433_DEL [dm6]	GCGATGG	G	3.133e^-4	0.784	INTRON CG32521
3R	3447691	3R_3447691_SNP [dm3] 3R_7621969_SNP [dm6]	T	A	3.142e^-4	0.784	INTRON CG34127
3R	13257116	3R_13257116_SNP [dm3] 3R_17431394_SNP [dm6]	A	C	3.142e^-4	0.784	INTRON CG5873	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8809792	3R_8809792_SNP [dm3] 3R_12984070_SNP [dm6]	A	C	3.147e^-4	0.784	INTRON Paip2
X	12318134	X_12318134_SNP [dm3] X_12424101_SNP [dm6]	T	A	3.150e^-4	0.784	INTERGENIC
2L	3398194	2L_3398194_SNP [dm3] 2L_3398194_SNP [dm6]	T	C	3.152e^-4	0.784	SYNONYMOUS_CODING CG34175 UPSTREAM CR44792
3L	3443920	3L_3443920_SNP [dm3] 3L_3443920_SNP [dm6]	C	T	3.155e^-4	0.784	INTRON eIF5B
3R	17904010	3R_17904010_SNP [dm3] 3R_22078288_SNP [dm6]	C	A	3.158e^-4	0.784	UTR_3_PRIME how
2L	13434721	2L_13434721_SNP [dm3] 2L_13434721_SNP [dm6]	T	C	3.168e^-4	0.784	UPSTREAM Tehao INTRON CG42784	TF binding site mE1_TFBS_cad
3R	25458160	3R_25458160_SNP [dm3] 3R_29632438_SNP [dm6]	A	G	3.173e^-4	0.784	SYNONYMOUS_CODING Dop1R2 UTR_3_PRIME Dop1R2	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7112723	2L_7112723_SNP [dm3] 2L_7112723_SNP [dm6]	A	T	3.175e^-4	0.784	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	13349724	2R_13349724_SNP [dm3] 2R_17462219_SNP [dm6]	G	T	3.182e^-4	0.784	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24880674	3R_24880674_SNP [dm3] 3R_29054952_SNP [dm6]	C	T	3.189e^-4	0.784	NON_SYNONYMOUS_CODING CG11843 UPSTREAM Sirt7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2798728	X_2798728_SNP [dm3] X_2904695_SNP [dm6]	T	G	3.198e^-4	0.784	INTRON kirre
X	12452675	X_12452675_SNP [dm3] X_12558642_SNP [dm6]	T	C	3.200e^-4	0.784	INTRON CG43921
3L	3444796	3L_3444796_SNP [dm3] 3L_3444796_SNP [dm6]	T	C	3.202e^-4	0.784	INTRON eIF5B	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	15104877	2L_15104877_SNP [dm3] 2L_15104877_SNP [dm6]	C	T	3.202e^-4	0.784	INTERGENIC
3R	24824142	3R_24824142_SNP [dm3] 3R_28998420_SNP [dm6]	A	G	3.205e^-4	0.784	INTRON wat
2R	16821128	2R_16821128_DEL [dm3] 2R_20933623_DEL [dm6]	GG	G	3.207e^-4	0.784	INTRON Rx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23971501	3R_23971501_SNP [dm3] 3R_28145779_SNP [dm6]	T	A	3.214e^-4	0.784	INTERGENIC
3R	9239973	3R_9239973_SNP [dm3] 3R_13414251_SNP [dm6]	T	C	3.215e^-4	0.784	INTRON yellow-e
2R	14397453	2R_14397453_SNP [dm3] 2R_18509948_SNP [dm6]	T	C	3.220e^-4	0.784	INTERGENIC
3L	3445488	3L_3445488_SNP [dm3] 3L_3445488_SNP [dm6]	T	C	3.220e^-4	0.784	SYNONYMOUS_CODING eIF5B
2L	16168488	2L_16168488_SNP [dm3] 2L_16168488_SNP [dm6]	A	G	3.241e^-4	0.788	UTR_5_PRIME Ca-alpha1D INTRON Ca-alpha1D
3R	21675579	3R_21675579_SNP [dm3] 3R_25849857_SNP [dm6]	G	A	3.249e^-4	0.788	DOWNSTREAM CG14545 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4859257	3R_4859257_DEL [dm3] 3R_9033535_DEL [dm6]	CTGCT	C	3.262e^-4	0.788	UTR_5_PRIME neur INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	8026722	3R_8026722_SNP [dm3] 3R_12201000_SNP [dm6]	G	A	3.265e^-4	0.788	INTERGENIC
2R	8851886	2R_8851886_SNP [dm3] 2R_12964381_SNP [dm6]	C	A	3.271e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13250340	2L_13250340_SNP [dm3] 2L_13250340_SNP [dm6]	G	A	3.282e^-4	0.788	DOWNSTREAM CG16820 INTERGENIC
3R	25474602	3R_25474602_SNP [dm3] 3R_29648880_SNP [dm6]	G	T	3.289e^-4	0.788	INTRON Dop1R2
3L	3043384	3L_3043384_SNP [dm3] 3L_3043384_SNP [dm6]	G	A	3.290e^-4	0.788	SYNONYMOUS_CODING Jafrac2 DOWNSTREAM scramb2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27410312	3R_27410312_SNP [dm3] 3R_31584590_SNP [dm6]	A	T	3.291e^-4	0.788	INTRON rod	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16853778	3R_16853778_SNP [dm3] 3R_21028056_SNP [dm6]	C	G	3.297e^-4	0.788	SPLICE_SITE_REGION Dhc93AB INTRON Dhc93AB	TF binding site mE1_TFBS_cad
2L	16458147	2L_16458147_SNP [dm3] 2L_16458147_SNP [dm6]	A	G	3.298e^-4	0.788	INTERGENIC	regulatory region REDfly_CRMs
3L	18158171	3L_18158171_SNP [dm3] 3L_18165071_SNP [dm6]	G	C	3.299e^-4	0.788	INTERGENIC
3R	14875515	3R_14875515_SNP [dm3] 3R_19049793_SNP [dm6]	A	T	3.300e^-4	0.788	INTRON cdi	TF binding site mE1_TFBS_sens
X	9384460	X_9384460_SNP [dm3] X_9490427_SNP [dm6]	A	G	3.301e^-4	0.788	INTRON mgl
3R	16863594	3R_16863594_SNP [dm3] 3R_21037872_SNP [dm6]	C	T	3.310e^-4	0.788	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
3L	3566239	3L_3566239_SNP [dm3] 3L_3566239_SNP [dm6]	C	G	3.311e^-4	0.788	INTRON Eip63E
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	3.312e^-4	0.788	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3R	4514857	3R_4514857_SNP [dm3] 3R_8689135_SNP [dm6]	G	A	3.314e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	992553	2L_992553_SNP [dm3] 2L_992553_SNP [dm6]	A	T	3.314e^-4	0.788	INTERGENIC
2R	19201326	2R_19201326_SNP [dm3] 2R_23313803_SNP [dm6]	C	A	3.320e^-4	0.788	SPLICE_SITE_REGION HP1Lcsd START_GAINED HP1Lcsd UTR_5_PRIME HP1Lcsd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4428153	3L_4428153_SNP [dm3] 3L_4428153_SNP [dm6]	A	T	3.334e^-4	0.789	INTERGENIC
X	17842095	X_17842095_SNP [dm3] X_17948062_SNP [dm6]	G	A	3.337e^-4	0.789	UTR_3_PRIME Sh INTRON Sh
2R	13339022	2R_13339022_SNP [dm3] 2R_17451517_SNP [dm6]	T	A	3.337e^-4	0.789	UPSTREAM mthl3 INTRON mthl3
3R	13229882	3R_13229882_SNP [dm3] 3R_17404160_SNP [dm6]	C	T	3.342e^-4	0.789	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
3R	15450921	3R_15450921_SNP [dm3] 3R_19625199_SNP [dm6]	T	G	3.343e^-4	0.789	UPSTREAM CG6231 INTRON CG6231
3L	18645916	3L_18645916_SNP [dm3] 3L_18652816_SNP [dm6]	T	A	3.350e^-4	0.789	INTRON MYPT-75D
2R	4994266	2R_4994266_SNP [dm3] 2R_9106761_SNP [dm6]	A	C	3.353e^-4	0.789	UTR_3_PRIME Vang DOWNSTREAM Pmm45A
3R	13584408	3R_13584408_SNP [dm3] 3R_17758686_SNP [dm6]	C	A	3.361e^-4	0.789	INTRON TyrR
X	13238434	X_13238434_SNP [dm3] X_13344401_SNP [dm6]	A	T	3.363e^-4	0.789	DOWNSTREAM CR45708 INTERGENIC
X	8710660	X_8710660_SNP [dm3] X_8816627_SNP [dm6]	T	C	3.373e^-4	0.79	INTERGENIC
2R	6986036	2R_6986036_SNP [dm3] 2R_11098531_SNP [dm6]	G	T	3.376e^-4	0.79	INTRON luna
3L	9302539	3L_9302539_SNP [dm3] 3L_9309439_SNP [dm6]	T	C	3.380e^-4	0.79	INTERGENIC
3L	6570565	3L_6570565_SNP [dm3] 3L_6577465_SNP [dm6]	T	C	3.381e^-4	0.79	INTRON CG18769 & 1 other
X	7991388	X_7991388_SNP [dm3] X_8097355_SNP [dm6]	A	G	3.387e^-4	0.79	SYNONYMOUS_CODING CG2258
3R	4511174	3R_4511174_SNP [dm3] 3R_8685452_SNP [dm6]	G	A	3.395e^-4	0.791	UPSTREAM CG44227 INTRON CR44937	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
2R	16851471	2R_16851471_SNP [dm3] 2R_20963966_SNP [dm6]	G	A	3.397e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9582276	2R_9582276_DEL [dm3] 2R_13694771_DEL [dm6]	AG	A	3.413e^-4	0.791	INTRON fas
2R	13350619	2R_13350619_SNP [dm3] 2R_17463114_SNP [dm6]	T	A	3.417e^-4	0.791	SYNONYMOUS_CODING CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	27410925	3R_27410925_SNP [dm3] 3R_31585203_SNP [dm6]	C	G	3.421e^-4	0.791	NON_SYNONYMOUS_CODING rod
2R	13004415	2R_13004415_SNP [dm3] 2R_17116910_SNP [dm6]	C	T	3.423e^-4	0.791	INTERGENIC
2L	17430702	2L_17430702_SNP [dm3] 2L_17430702_SNP [dm6]	T	A	3.424e^-4	0.791	DOWNSTREAM CR44409 INTRON Dif
3L	1786443	3L_1786443_SNP [dm3] 3L_1786443_SNP [dm6]	G	A	3.425e^-4	0.791	SYNONYMOUS_CODING alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3R	15480037	3R_15480037_SNP [dm3] 3R_19654315_SNP [dm6]	C	T	3.428e^-4	0.791	SYNONYMOUS_CODING CG6184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10815402	2L_10815402_SNP [dm3] 2L_10815402_SNP [dm6]	T	C	3.435e^-4	0.791	INTRON Nos
3R	4882864	3R_4882864_SNP [dm3] 3R_9057142_SNP [dm6]	G	A	3.438e^-4	0.791	INTRON Kdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	3444082	3L_3444082_SNP [dm3] 3L_3444082_SNP [dm6]	A	G	3.446e^-4	0.791	INTRON eIF5B
3L	1376291	3L_1376291_SNP [dm3] 3L_1376291_SNP [dm6]	C	T	3.448e^-4	0.791	INTRON Ptp61F & 1 other
3R	14438044	3R_14438044_SNP [dm3] 3R_18612322_SNP [dm6]	G	A	3.450e^-4	0.791	INTRON qin & 1 other
3L	11232674	3L_11232674_SNP [dm3] 3L_11239574_SNP [dm6]	G	A	3.459e^-4	0.791	INTERGENIC
3L	13172890	3L_13172890_SNP [dm3] 3L_13179790_SNP [dm6]	T	A	3.460e^-4	0.791	INTERGENIC
2R	17690503	2R_17690503_SNP [dm3] 2R_21802998_SNP [dm6]	A	T	3.464e^-4	0.791	UPSTREAM CR9284 INTERGENIC
2R	14227634	2R_14227634_INS [dm3] 2R_18340129_INS [dm6]	C	CC	3.474e^-4	0.792	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7085366	3L_7085366_SNP [dm3] 3L_7092266_SNP [dm6]	G	A	3.474e^-4	0.792	UPSTREAM Cpr65Ec INTERGENIC
2R	9582304	2R_9582304_SNP [dm3] 2R_13694799_SNP [dm6]	T	A	3.477e^-4	0.792	INTRON fas
2R	17474760	2R_17474760_SNP [dm3] 2R_21587255_SNP [dm6]	C	T	3.491e^-4	0.793	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2311050	3R_2311050_SNP [dm3] 3R_6485328_SNP [dm6]	A	T	3.492e^-4	0.793	INTRON CG15186
3R	22704366	3R_22704366_SNP [dm3] 3R_26878644_SNP [dm6]	G	A	3.499e^-4	0.793	INTRON CG5500 & 1 other
3R	12766819	3R_12766819_SNP [dm3] 3R_16941097_SNP [dm6]	G	T	3.500e^-4	0.793	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12376175	3L_12376175_SNP [dm3] 3L_12383075_SNP [dm6]	T	C	3.508e^-4	0.793	INTRON Ncc69
2L	9844088	2L_9844088_SNP [dm3] 2L_9844088_SNP [dm6]	C	G	3.516e^-4	0.793	INTRON nAChRalpha6
3L	7824637	3L_7824637_SNP [dm3] 3L_7831537_SNP [dm6]	C	T	3.518e^-4	0.793	SYNONYMOUS_CODING Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_chinmo
3L	2709813	3L_2709813_SNP [dm3] 3L_2709813_SNP [dm6]	C	T	3.519e^-4	0.793	INTRON Fife
3L	15755995	3L_15755995_INS [dm3] 3L_15762895_INS [dm6]	A	AGTGAATTAGGTCCTGAA...	3.527e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_inv
3L	13172822	3L_13172822_SNP [dm3] 3L_13179722_SNP [dm6]	T	C	3.534e^-4	0.794	INTERGENIC
3L	2198677	3L_2198677_SNP [dm3] 3L_2198677_SNP [dm6]	C	T	3.541e^-4	0.794	DOWNSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5023303	2R_5023303_SNP [dm3] 2R_9135798_SNP [dm6]	G	A	3.547e^-4	0.794	SYNONYMOUS_CODING alc DOWNSTREAM Hydr1	TF binding site mE1_TFBS_cad
2L	19792536	2L_19792536_SNP [dm3] 2L_19792536_SNP [dm6]	C	T	3.549e^-4	0.794	SYNONYMOUS_CODING CG10466 UPSTREAM CdGAPr DOWNSTREAM fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	3782663	2L_3782663_SNP [dm3] 2L_3782663_SNP [dm6]	C	A	3.554e^-4	0.794	SYNONYMOUS_CODING bowl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11838358	3L_11838358_SNP [dm3] 3L_11845258_SNP [dm6]	C	T	3.554e^-4	0.794	INTERGENIC
2R	3890508	2R_3890508_SNP [dm3] 2R_8003003_SNP [dm6]	C	G	3.559e^-4	0.794	UPSTREAM CG11191 INTERGENIC
X	9474158	X_9474158_SNP [dm3] X_9580125_SNP [dm6]	A	G	3.572e^-4	0.794	UPSTREAM CG32699 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	2852983	3R_2852983_SNP [dm3] 3R_7027261_SNP [dm6]	G	A	3.574e^-4	0.794	INTERGENIC
X	5328786	X_5328786_SNP [dm3] X_5434753_SNP [dm6]	C	T	3.574e^-4	0.794	INTRON CR44471
3R	24824152	3R_24824152_SNP [dm3] 3R_28998430_SNP [dm6]	G	C	3.575e^-4	0.794	INTRON wat
3L	5344386	3L_5344386_SNP [dm3] 3L_5351286_SNP [dm6]	A	T	3.581e^-4	0.795	INTRON lama
2R	13348658	2R_13348658_SNP [dm3] 2R_17461153_SNP [dm6]	A	G	3.592e^-4	0.795	INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	13172832	3L_13172832_SNP [dm3] 3L_13179732_SNP [dm6]	A	C	3.596e^-4	0.795	INTERGENIC
X	9704527	X_9704527_SNP [dm3] X_9810494_SNP [dm6]	G	A	3.600e^-4	0.795	INTRON CG32698
3R	10796735	3R_10796735_SNP [dm3] 3R_14971013_SNP [dm6]	A	G	3.604e^-4	0.795	INTERGENIC
2R	4630632	2R_4630632_INS [dm3] 2R_8743127_INS [dm6]	C	CGC	3.604e^-4	0.795	DOWNSTREAM CR44277 INTRON CG8740
3R	13229928	3R_13229928_SNP [dm3] 3R_17404206_SNP [dm6]	G	A	3.606e^-4	0.795	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
X	13855690	X_13855690_SNP [dm3] X_13961657_SNP [dm6]	T	A	3.614e^-4	0.796	INTRON mamo
2R	8874283	2R_8874283_SNP [dm3] 2R_12986778_SNP [dm6]	C	A	3.629e^-4	0.798	DOWNSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z
2R	13390880	2R_13390880_SNP [dm3] 2R_17503375_SNP [dm6]	G	T	3.647e^-4	0.799	INTRON CG43164	TF binding site BDTNP1_TFBS_dl
3L	10642204	3L_10642204_SNP [dm3] 3L_10649104_SNP [dm6]	G	C	3.653e^-4	0.799	INTRON CG32066
2L	13229324	2L_13229324_SNP [dm3] 2L_13229324_SNP [dm6]	T	C	3.654e^-4	0.799	UPSTREAM CG16815 DOWNSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	3386052	2L_3386052_INS [dm3] 2L_3386052_INS [dm6]	T	TTTTTAGAGATACTT...	3.654e^-4	0.799	DOWNSTREAM CR45301 INTERGENIC
3R	17908415	3R_17908415_SNP [dm3] 3R_22082693_SNP [dm6]	G	A	3.654e^-4	0.799	INTRON CG13408
3R	22393186	3R_22393186_SNP [dm3] 3R_26567464_SNP [dm6]	C	A	3.664e^-4	0.8	INTRON scrib	TF binding site mE1_TFBS_bab1
3L	3668669	3L_3668669_SNP [dm3] 3L_3668669_SNP [dm6]	C	G	3.679e^-4	0.801	INTERGENIC
3R	17908167	3R_17908167_SNP [dm3] 3R_22082445_SNP [dm6]	G	C	3.679e^-4	0.801	INTRON CG13408
3L	13042339	3L_13042339_SNP [dm3] 3L_13049239_SNP [dm6]	T	C	3.687e^-4	0.801	DOWNSTREAM CG11279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15393564	3L_15393564_SNP [dm3] 3L_15400464_SNP [dm6]	T	A	3.690e^-4	0.801	INTERGENIC
3R	2154002	3R_2154002_SNP [dm3] 3R_6328280_SNP [dm6]	T	C	3.693e^-4	0.801	DOWNSTREAM Osi17 INTERGENIC
3L	2274178	3L_2274178_SNP [dm3] 3L_2274178_SNP [dm6]	C	T	3.693e^-4	0.801	DOWNSTREAM tRNA:CR32303 INTERGENIC
3R	15823130	3R_15823130_SNP [dm3] 3R_19997408_SNP [dm6]	T	A	3.707e^-4	0.803	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13108844	2L_13108844_SNP [dm3] 2L_13108844_SNP [dm6]	T	C	3.712e^-4	0.803	INTRON CG5142
2R	18015004	2R_18015004_SNP [dm3] 2R_22127499_SNP [dm6]	A	G	3.715e^-4	0.803	UTR_5_PRIME GM130 UPSTREAM NtR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	13045280	3L_13045280_SNP [dm3] 3L_13052180_SNP [dm6]	C	T	3.725e^-4	0.803	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	9806539	X_9806539_SNP [dm3] X_9912506_SNP [dm6]	C	A	3.732e^-4	0.803	INTERGENIC
2R	4979516	2R_4979516_SNP [dm3] 2R_9092011_SNP [dm6]	T	G	3.736e^-4	0.803	UPSTREAM CG8080 DOWNSTREAM CG13741 INTRON CG8080
3R	8560814	3R_8560814_SNP [dm3] 3R_12735092_SNP [dm6]	C	G	3.740e^-4	0.803	INTERGENIC
X	9085990	X_9085990_SNP [dm3] X_9191957_SNP [dm6]	C	T	3.742e^-4	0.803	SYNONYMOUS_CODING CG12057 UPSTREAM CG12056	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14434345	2R_14434345_SNP [dm3] 2R_18546840_SNP [dm6]	T	A	3.745e^-4	0.803	INTRON Rgk2
2L	3164558	2L_3164558_SNP [dm3] 2L_3164558_SNP [dm6]	C	T	3.747e^-4	0.803	INTRON Hydr2
3R	8232610	3R_8232610_SNP [dm3] 3R_12406888_SNP [dm6]	C	G	3.760e^-4	0.805	SYNONYMOUS_CODING CG5167 UPSTREAM Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7768218	3R_7768218_SNP [dm3] 3R_11942496_SNP [dm6]	A	C	3.762e^-4	0.805	INTRON Cad87A
3R	25821908	3R_25821908_SNP [dm3] 3R_29996186_SNP [dm6]	T	A	3.767e^-4	0.805	NON_SYNONYMOUS_CODING Sas-6 UPSTREAM CG7903 DOWNSTREAM CG15525	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3566231	3L_3566231_SNP [dm3] 3L_3566231_SNP [dm6]	G	A	3.773e^-4	0.805	INTRON Eip63E
3R	9621145	3R_9621145_SNP [dm3] 3R_13795423_SNP [dm6]	T	C	3.780e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21454859	X_21454859_SNP [dm3] X_21583832_SNP [dm6]	A	G	3.800e^-4	0.808	EXON CR44711
3L	4658873	3L_4658873_SNP [dm3] 3L_4658873_SNP [dm6]	C	T	3.809e^-4	0.808	INTRON axo
3R	814651	3R_814651_SNP [dm3] 3R_4988929_SNP [dm6]	G	T	3.815e^-4	0.808	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	9474198	X_9474198_SNP [dm3] X_9580165_SNP [dm6]	T	C	3.815e^-4	0.808	UPSTREAM CG32699 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	3455865	3R_3455865_SNP [dm3] 3R_7630143_SNP [dm6]	G	A	3.816e^-4	0.808	INTRON CG34127	TF binding site mE1_TFBS_inv
3L	10752594	3L_10752594_DEL [dm3] 3L_10759494_DEL [dm6]	TA	T	3.818e^-4	0.808	INTERGENIC
3R	14608577	3R_14608577_SNP [dm3] 3R_18782855_SNP [dm6]	T	C	3.833e^-4	0.81	INTRON CG7720
3R	15347548	3R_15347548_SNP [dm3] 3R_19521826_SNP [dm6]	G	A	3.838e^-4	0.81	INTRON Dys
3R	24598913	3R_24598913_SNP [dm3] 3R_28773191_SNP [dm6]	T	C	3.839e^-4	0.81	INTERGENIC
2R	5400612	2R_5400612_SNP [dm3] 2R_9513107_SNP [dm6]	G	A	3.848e^-4	0.81	INTRON brp
X	21455259	X_21455259_SNP [dm3] X_21584232_SNP [dm6]	A	G	3.873e^-4	0.81	EXON CR44711
2L	13239277	2L_13239277_DEL [dm3] 2L_13239277_DEL [dm6]	ACAATTACCTA...	A	3.873e^-4	0.81	UTR_3_PRIME CG5867 UPSTREAM CG5945
3R	12766841	3R_12766841_SNP [dm3] 3R_16941119_SNP [dm6]	T	A	3.884e^-4	0.81	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12628613	3L_12628613_SNP [dm3] 3L_12635513_SNP [dm6]	G	T	3.885e^-4	0.81	INTRON CR32111	TF binding site mE1_TFBS_HSA
3R	13257103	3R_13257103_DEL [dm3] 3R_17431381_DEL [dm6]	TT	T	3.887e^-4	0.81	INTRON CG5873	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13325302	3L_13325302_SNP [dm3] 3L_13332202_SNP [dm6]	G	A	3.890e^-4	0.81	INTERGENIC
3R	10659273	3R_10659273_SNP [dm3] 3R_14833551_SNP [dm6]	G	A	3.890e^-4	0.81	INTRON btsz
3L	6682238	3L_6682238_SNP [dm3] 3L_6689138_SNP [dm6]	C	T	3.899e^-4	0.81	DOWNSTREAM SP1173 INTERGENIC
2L	15531449	2L_15531449_SNP [dm3] 2L_15531449_SNP [dm6]	T	G	3.906e^-4	0.81	INTERGENIC
2L	15531451	2L_15531451_SNP [dm3] 2L_15531451_SNP [dm6]	C	A	3.906e^-4	0.81	INTERGENIC
2L	15531453	2L_15531453_SNP [dm3] 2L_15531453_SNP [dm6]	T	A	3.906e^-4	0.81	INTERGENIC
3R	16854172	3R_16854172_SNP [dm3] 3R_21028450_SNP [dm6]	T	G	3.918e^-4	0.81	INTRON Dhc93AB
X	14339536	X_14339536_INS [dm3] X_14445503_INS [dm6]	C	CAACCAAGC	3.920e^-4	0.81	INTRON dpr8
2L	18815145	2L_18815145_SNP [dm3] 2L_18815145_SNP [dm6]	T	A	3.921e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13869018	2L_13869018_SNP [dm3] 2L_13869018_SNP [dm6]	G	T	3.922e^-4	0.81	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10034942	3R_10034942_SNP [dm3] 3R_14209220_SNP [dm6]	A	C	3.924e^-4	0.81	INTRON Dop1R1
3R	15347550	3R_15347550_SNP [dm3] 3R_19521828_SNP [dm6]	A	G	3.936e^-4	0.81	INTRON Dys
2L	4402965	2L_4402965_SNP [dm3] 2L_4402965_SNP [dm6]	T	C	3.948e^-4	0.81	SYNONYMOUS_CODING CG33003 UPSTREAM Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_h
2L	3670289	2L_3670289_SNP [dm3] 2L_3670289_SNP [dm6]	G	A	3.951e^-4	0.81	SYNONYMOUS_CODING Sfp24Bc UPSTREAM Sfp24Bb INTRON CG34340
3R	25166103	3R_25166103_SNP [dm3] 3R_29340381_SNP [dm6]	A	G	3.956e^-4	0.81	INTERGENIC
2R	20367920	2R_20367920_SNP [dm3] 2R_24480397_SNP [dm6]	G	C	3.960e^-4	0.81	INTRON CG13579	TF binding site mE1_TFBS_chinmo
3R	8561159	3R_8561159_INS [dm3] 3R_12735437_INS [dm6]	A	ACGAGGATTAA...	3.960e^-4	0.81	INTERGENIC
2L	7364586	2L_7364586_SNP [dm3] 2L_7364586_SNP [dm6]	G	A	3.961e^-4	0.81	UTR_5_PRIME Wnt10
3R	10223051	3R_10223051_DEL [dm3] 3R_14397329_DEL [dm6]	ATGGCA	A	3.965e^-4	0.81	UPSTREAM mir-2281 INTRON cv-c
3R	10375300	3R_10375300_SNP [dm3] 3R_14549578_SNP [dm6]	T	A	3.966e^-4	0.81	INTRON Pde6
3L	959007	3L_959007_SNP [dm3] 3L_959007_SNP [dm6]	T	C	3.967e^-4	0.81	UPSTREAM Glut1 INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	4036939	3R_4036939_SNP [dm3] 3R_8211217_SNP [dm6]	A	T	3.978e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_sens
3L	13172766	3L_13172766_SNP [dm3] 3L_13179666_SNP [dm6]	C	T	3.986e^-4	0.81	INTERGENIC
X	12253270	X_12253270_SNP [dm3] X_12359237_SNP [dm6]	C	G	3.992e^-4	0.81	INTERGENIC
2R	13347620	2R_13347620_SNP [dm3] 2R_17460115_SNP [dm6]	G	A	3.994e^-4	0.81	UPSTREAM CG14478 INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	15560008	3R_15560008_SNP [dm3] 3R_19734286_SNP [dm6]	T	A	3.995e^-4	0.81	INTRON GluClalpha
2R	12028033	2R_12028033_SNP [dm3] 2R_16140528_SNP [dm6]	T	A	3.998e^-4	0.81	SYNONYMOUS_CODING Got1	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
2R	10740463	2R_10740463_SNP [dm3] 2R_14852958_SNP [dm6]	T	C	4.010e^-4	0.81	UTR_5_PRIME Ercc1 UPSTREAM SMC2 DOWNSTREAM Ciao1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	4024183	3R_4024183_SNP [dm3] 3R_8198461_SNP [dm6]	A	G	4.012e^-4	0.81	UPSTREAM CR43302 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
3L	11064110	3L_11064110_SNP [dm3] 3L_11071010_SNP [dm6]	A	T	4.019e^-4	0.81	INTRON Mocs1
2R	13025461	2R_13025461_SNP [dm3] 2R_17137956_SNP [dm6]	T	C	4.023e^-4	0.81	SYNONYMOUS_CODING CG11395
3L	10215594	3L_10215594_SNP [dm3] 3L_10222494_SNP [dm6]	C	T	4.025e^-4	0.81	INTRON scramb1
X	12452685	X_12452685_SNP [dm3] X_12558652_SNP [dm6]	T	A	4.026e^-4	0.81	INTRON CG43921
2R	6985590	2R_6985590_SNP [dm3] 2R_11098085_SNP [dm6]	A	T	4.033e^-4	0.81	INTRON luna
3R	26513130	3R_26513130_SNP [dm3] 3R_30687408_SNP [dm6]	G	A	4.038e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9942344	2L_9942344_SNP [dm3] 2L_9942344_SNP [dm6]	T	A	4.041e^-4	0.81	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619	TF binding site mE1_TFBS_HSA
2L	2526054	2L_2526054_SNP [dm3] 2L_2526054_SNP [dm6]	T	C	4.042e^-4	0.81	INTERGENIC
X	9474288	X_9474288_SNP [dm3] X_9580255_SNP [dm6]	A	T	4.047e^-4	0.81	UPSTREAM CG32699 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	9474306	X_9474306_SNP [dm3] X_9580273_SNP [dm6]	T	C	4.047e^-4	0.81	UPSTREAM CG32699 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17474775	2R_17474775_SNP [dm3] 2R_21587270_SNP [dm6]	A	G	4.055e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19214550	3R_19214550_SNP [dm3] 3R_23388828_SNP [dm6]	A	G	4.058e^-4	0.81	NON_SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5021257	2R_5021257_SNP [dm3] 2R_9133752_SNP [dm6]	C	T	4.060e^-4	0.81	SYNONYMOUS_CODING Hydr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3475863	2R_3475863_SNP [dm3] 2R_7588358_SNP [dm6]	G	A	4.062e^-4	0.81	UTR_3_PRIME CG1360	TF binding site mE1_TFBS_cad
2L	15775545	2L_15775545_DEL [dm3] 2L_15775545_DEL [dm6]	ATATGT	A	4.065e^-4	0.81	DOWNSTREAM CG43760 INTERGENIC
X	5742165	X_5742165_SNP [dm3] X_5848132_SNP [dm6]	G	A	4.067e^-4	0.81	INTERGENIC
3L	22618454	3L_22618454_SNP [dm3] 3L_22625354_SNP [dm6]	C	A	4.068e^-4	0.81	INTRON CG14459	TF binding site BDTNP1_TFBS_da
X	10819678	X_10819678_SNP [dm3] X_10925645_SNP [dm6]	C	T	4.070e^-4	0.81	DOWNSTREAM v INTERGENIC
3R	9275721	3R_9275721_SNP [dm3] 3R_13449999_SNP [dm6]	G	A	4.081e^-4	0.812	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	13798268	3R_13798268_SNP [dm3] 3R_17972546_SNP [dm6]	A	T	4.088e^-4	0.812	INTRON cpo
X	20498520	X_20498520_SNP [dm3] X_20627493_SNP [dm6]	C	A	4.095e^-4	0.812	INTERGENIC
2R	13347631	2R_13347631_SNP [dm3] 2R_17460126_SNP [dm6]	C	T	4.101e^-4	0.812	UPSTREAM CG14478 INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	9477003	X_9477003_INS [dm3] X_9582970_INS [dm6]	A	ATGTA	4.104e^-4	0.812	INTERGENIC
2L	376529	2L_376529_SNP [dm3] 2L_376529_SNP [dm6]	C	T	4.106e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	13656310	3R_13656310_SNP [dm3] 3R_17830588_SNP [dm6]	C	T	4.113e^-4	0.812	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14092066	3R_14092066_SNP [dm3] 3R_18266344_SNP [dm6]	T	A	4.115e^-4	0.812	INTERGENIC
3R	2182521	3R_2182521_SNP [dm3] 3R_6356799_SNP [dm6]	A	G	4.123e^-4	0.812	SYNONYMOUS_CODING Pak
2R	13348858	2R_13348858_SNP [dm3] 2R_17461353_SNP [dm6]	A	G	4.125e^-4	0.812	INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6588980	2R_6588980_SNP [dm3] 2R_10701475_SNP [dm6]	C	G	4.125e^-4	0.812	INTRON stan	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12166290	2L_12166290_SNP [dm3] 2L_12166290_SNP [dm6]	T	C	4.130e^-4	0.812	SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
X	5516800	X_5516800_SNP [dm3] X_5622767_SNP [dm6]	G	T	4.141e^-4	0.812	NON_SYNONYMOUS_CODING l_1_G0045 UPSTREAM mir-3645 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	10740560	2R_10740560_SNP [dm3] 2R_14853055_SNP [dm6]	G	T	4.142e^-4	0.812	NON_SYNONYMOUS_CODING Ercc1 UPSTREAM SMC2 DOWNSTREAM Ciao1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	13135929	3R_13135929_SNP [dm3] 3R_17310207_SNP [dm6]	C	G	4.143e^-4	0.812	INTERGENIC
3L	11838197	3L_11838197_SNP [dm3] 3L_11845097_SNP [dm6]	C	T	4.155e^-4	0.812	INTERGENIC
3R	27407992	3R_27407992_SNP [dm3] 3R_31582270_SNP [dm6]	G	A	4.159e^-4	0.812	INTRON rod	TF binding site mE1_TFBS_sens
3R	2140173	3R_2140173_SNP [dm3] 3R_6314451_SNP [dm6]	A	G	4.160e^-4	0.812	UPSTREAM Osi17 INTRON Osi17
X	11132694	X_11132694_SNP [dm3] X_11238661_SNP [dm6]	T	C	4.163e^-4	0.812	INTRON CG44422
3R	24165765	3R_24165765_SNP [dm3] 3R_28340043_SNP [dm6]	A	G	4.166e^-4	0.812	UPSTREAM Moca-cyp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2420673	3L_2420673_SNP [dm3] 3L_2420673_SNP [dm6]	T	C	4.169e^-4	0.812	INTRON CG45186
X	15104911	X_15104911_SNP [dm3] X_15210878_SNP [dm6]	T	C	4.173e^-4	0.812	SYNONYMOUS_CODING CG5662
3L	13255679	3L_13255679_SNP [dm3] 3L_13262579_SNP [dm6]	A	G	4.177e^-4	0.812	INTRON caps
3R	21680890	3R_21680890_SNP [dm3] 3R_25855168_SNP [dm6]	A	C	4.181e^-4	0.812	UPSTREAM CG5890 INTERGENIC
3L	1368507	3L_1368507_SNP [dm3] 3L_1368507_SNP [dm6]	C	T	4.189e^-4	0.812	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19091984	X_19091984_SNP [dm3] X_19197951_SNP [dm6]	G	T	4.193e^-4	0.812	UTR_3_PRIME CG7990
3R	2731489	3R_2731489_SNP [dm3] 3R_6905767_SNP [dm6]	A	T	4.208e^-4	0.812	INTRON Antp
X	13454244	X_13454244_SNP [dm3] X_13560211_SNP [dm6]	G	A	4.210e^-4	0.812	INTERGENIC
3R	1755865	3R_1755865_SNP [dm3] 3R_5930143_SNP [dm6]	C	T	4.222e^-4	0.812	INTRON CG34113
3L	13172891	3L_13172891_SNP [dm3] 3L_13179791_SNP [dm6]	G	A	4.227e^-4	0.812	INTERGENIC
3L	4312092	3L_4312092_SNP [dm3] 3L_4312092_SNP [dm6]	G	A	4.228e^-4	0.812	INTERGENIC
3L	6596885	3L_6596885_SNP [dm3] 3L_6603785_SNP [dm6]	A	C	4.228e^-4	0.812	UTR_5_PRIME CG8368 UPSTREAM ndl DOWNSTREAM zpg
X	7883547	X_7883547_SNP [dm3] X_7989514_SNP [dm6]	C	T	4.230e^-4	0.812	INTERGENIC
X	17274045	X_17274045_SNP [dm3] X_17380012_SNP [dm6]	A	G	4.231e^-4	0.812	INTERGENIC
X	20259202	X_20259202_SNP [dm3] X_20388175_SNP [dm6]	A	G	4.235e^-4	0.812	INTERGENIC
3L	16693270	3L_16693270_SNP [dm3] 3L_16700170_SNP [dm6]	C	G	4.236e^-4	0.812	INTRON Lasp & 1 other
3L	18003052	3L_18003052_SNP [dm3] 3L_18009952_SNP [dm6]	G	T	4.246e^-4	0.813	INTRON Eip75B
3R	12460782	3R_12460782_SNP [dm3] 3R_16635060_SNP [dm6]	A	C	4.249e^-4	0.813	INTRON Fas1
2L	10468960	2L_10468960_SNP [dm3] 2L_10468960_SNP [dm6]	C	G	4.256e^-4	0.813	INTRON RluA-1
3L	16822793	3L_16822793_DEL [dm3] 3L_16829693_DEL [dm6]	AA	A	4.261e^-4	0.813	UPSTREAM CG13024 INTERGENIC
3L	958962	3L_958962_SNP [dm3] 3L_958962_SNP [dm6]	G	A	4.262e^-4	0.813	UPSTREAM Glut1 INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	4958745	3R_4958745_DEL [dm3] 3R_9133023_DEL [dm6]	CC	C	4.267e^-4	0.813	INTRON pum
3R	18426467	3R_18426467_SNP [dm3] 3R_22600745_SNP [dm6]	A	G	4.271e^-4	0.813	SYNONYMOUS_CODING Efa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5827401	3L_5827401_SNP [dm3] 3L_5834301_SNP [dm6]	G	A	4.290e^-4	0.814	INTRON vn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	11980464	3R_11980464_SNP [dm3] 3R_16154742_SNP [dm6]	G	A	4.293e^-4	0.814	UPSTREAM CG6006 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10552061	3L_10552061_INS [dm3] 3L_10558961_INS [dm6]	A	ACTC	4.294e^-4	0.814	UTR_5_PRIME CG6527 INTRON A2bp1
3R	13818341	3R_13818341_SNP [dm3] 3R_17992619_SNP [dm6]	C	T	4.302e^-4	0.814	INTRON cpo
3L	15249583	3L_15249583_DEL [dm3] 3L_15256483_DEL [dm6]	TAGTA	AT	4.313e^-4	0.814	INTERGENIC
3L	13172809	3L_13172809_SNP [dm3] 3L_13179709_SNP [dm6]	G	A	4.317e^-4	0.814	INTERGENIC
3L	6979417	3L_6979417_SNP [dm3] 3L_6986317_SNP [dm6]	A	G	4.319e^-4	0.814	INTERGENIC
3R	8226419	3R_8226419_SNP [dm3] 3R_12400697_SNP [dm6]	G	A	4.319e^-4	0.814	SYNONYMOUS_CODING lig3 INTRON CG34402
X	6195047	X_6195047_SNP [dm3] X_6301014_SNP [dm6]	T	G	4.321e^-4	0.814	INTRON CG12219	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	5023309	2R_5023309_SNP [dm3] 2R_9135804_SNP [dm6]	A	G	4.324e^-4	0.814	SYNONYMOUS_CODING alc DOWNSTREAM Hydr1	TF binding site mE1_TFBS_cad
3R	13256597	3R_13256597_SNP [dm3] 3R_17430875_SNP [dm6]	A	G	4.331e^-4	0.814	INTRON CG5873
2L	5525153	2L_5525153_SNP [dm3] 2L_5525153_SNP [dm6]	G	A	4.332e^-4	0.814	SYNONYMOUS_CODING CG6907 UPSTREAM Cap-D3 DOWNSTREAM CR44793	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27383985	3R_27383985_SNP [dm3] 3R_31558263_SNP [dm6]	T	C	4.332e^-4	0.814	SYNONYMOUS_CODING nyo
3L	8618679	3L_8618679_SNP [dm3] 3L_8625579_SNP [dm6]	C	T	4.336e^-4	0.814	UPSTREAM Zasp66 INTRON Zasp66
3L	15272735	3L_15272735_SNP [dm3] 3L_15279635_SNP [dm6]	A	T	4.346e^-4	0.814	INTERGENIC

By genomic position
Variant impact
Gene name

Cuticul_n_C26 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results