DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.712e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.03853

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.963	0.0507

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2381 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	17764342	2R_17764342_SNP [dm3] 2R_21876837_SNP [dm6]	C	G	6.109e^-8	0.115	INTRON Fili
X	18692187	X_18692187_DEL [dm3] X_18798154_DEL [dm6]	ACCCGGTA	A	3.676e^-7	0.222	UPSTREAM bnb INTRON Pk17E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7923827	2L_7923827_SNP [dm3] 2L_7923827_SNP [dm6]	C	G	3.970e^-7	0.222	INTRON Snoo
2L	7923833	2L_7923833_INS [dm3] 2L_7923833_INS [dm6]	A	AACTTTATA	4.738e^-7	0.222	INTRON Snoo
2L	4906719	2L_4906719_SNP [dm3] 2L_4906719_SNP [dm6]	C	T	9.285e^-7	0.294	UTR_5_PRIME CG2837
3L	11191224	3L_11191224_SNP [dm3] 3L_11198124_SNP [dm6]	A	G	9.779e^-7	0.294	UPSTREAM GlcAT-P DOWNSTREAM Plod INTERGENIC
3R	10374651	3R_10374651_SNP [dm3] 3R_14548929_SNP [dm6]	A	G	1.268e^-6	0.294	INTRON Pde6
3R	10374646	3R_10374646_SNP [dm3] 3R_14548924_SNP [dm6]	A	C	1.352e^-6	0.294	INTRON Pde6
2L	7923494	2L_7923494_SNP [dm3] 2L_7923494_SNP [dm6]	C	T	1.542e^-6	0.294	INTRON Snoo
3L	7898540	3L_7898540_SNP [dm3] 3L_7905440_SNP [dm6]	A	G	1.565e^-6	0.294	INTRON pbl
2R	14222071	2R_14222071_SNP [dm3] 2R_18334566_SNP [dm6]	A	G	2.580e^-6	0.409	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10672633	2L_10672633_SNP [dm3] 2L_10672633_SNP [dm6]	T	G	2.768e^-6	0.409	INTERGENIC
2L	12927929	2L_12927929_SNP [dm3] 2L_12927929_SNP [dm6]	A	C	3.086e^-6	0.409	SYNONYMOUS_CODING ACXE
3L	11191321	3L_11191321_SNP [dm3] 3L_11198221_SNP [dm6]	A	C	3.112e^-6	0.409	UTR_3_PRIME Plod UPSTREAM GlcAT-P
3R	20196831	3R_20196831_SNP [dm3] 3R_24371109_SNP [dm6]	A	T	3.275e^-6	0.409	DOWNSTREAM CG13614 INTRON CG17782
3L	7898524	3L_7898524_SNP [dm3] 3L_7905424_SNP [dm6]	G	A	4.286e^-6	0.457	INTRON pbl
3L	12683856	3L_12683856_SNP [dm3] 3L_12690756_SNP [dm6]	G	A	4.420e^-6	0.457	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7898559	3L_7898559_SNP [dm3] 3L_7905459_SNP [dm6]	G	A	4.494e^-6	0.457	INTRON pbl
3R	13429141	3R_13429141_DEL [dm3] 3R_17603419_DEL [dm6]	ATCGAAAA	A	4.889e^-6	0.457	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4906726	2L_4906726_SNP [dm3] 2L_4906726_SNP [dm6]	A	G	5.354e^-6	0.457	UTR_5_PRIME CG2837
2L	13537306	2L_13537306_SNP [dm3] 2L_13537306_SNP [dm6]	C	G	5.377e^-6	0.457	INTRON B4
3L	4642332	3L_4642332_DEL [dm3] 3L_4642332_DEL [dm6]	GCACGAATATGTG...	T	5.786e^-6	0.457	UTR_3_PRIME axo INTRON axo
3L	4642369	3L_4642369_SNP [dm3] 3L_4642369_SNP [dm6]	A	G	5.786e^-6	0.457	UTR_3_PRIME axo INTRON axo
2L	803177	2L_803177_SNP [dm3] 2L_803177_SNP [dm6]	G	A	5.846e^-6	0.457	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8586758	2L_8586758_SNP [dm3] 2L_8586758_SNP [dm6]	T	C	6.295e^-6	0.472	INTRON Sema-1a
2R	7643388	2R_7643388_SNP [dm3] 2R_11755883_SNP [dm6]	G	A	6.777e^-6	0.472	UPSTREAM ths INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	7923024	2L_7923024_SNP [dm3] 2L_7923024_SNP [dm6]	G	A	6.800e^-6	0.472	INTRON Snoo
2L	6275096	2L_6275096_SNP [dm3] 2L_6275096_SNP [dm6]	C	A	7.419e^-6	0.497	INTRON Ddr
3R	15822838	3R_15822838_SNP [dm3] 3R_19997116_SNP [dm6]	T	G	7.886e^-6	0.51	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	20294144	3R_20294144_SNP [dm3] 3R_24468422_SNP [dm6]	C	A	8.626e^-6	0.539	UPSTREAM CG31128 INTERGENIC
3R	12514684	3R_12514684_SNP [dm3] 3R_16688962_SNP [dm6]	C	T	9.153e^-6	0.546	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	18426357	2R_18426357_SNP [dm3] 2R_22538852_SNP [dm6]	T	A	9.533e^-6	0.546	INTRON px
3R	10374942	3R_10374942_SNP [dm3] 3R_14549220_SNP [dm6]	G	A	9.665e^-6	0.546	INTRON Pde6
X	21867037	X_21867037_SNP [dm3] X_22465201_SNP [dm6]	C	A	1.059e^-5	0.546	SYNONYMOUS_CODING CG14619 INTRON CG14619
3L	9949223	3L_9949223_SNP [dm3] 3L_9956123_SNP [dm6]	C	T	1.088e^-5	0.546	INTRON CG34356
2L	11500310	2L_11500310_SNP [dm3] 2L_11500310_SNP [dm6]	T	C	1.100e^-5	0.546	INTERGENIC
3L	11191241	3L_11191241_SNP [dm3] 3L_11198141_SNP [dm6]	G	T	1.173e^-5	0.546	UPSTREAM GlcAT-P DOWNSTREAM Plod INTERGENIC
3L	6974285	3L_6974285_DEL [dm3] 3L_6981185_DEL [dm6]	CT	C	1.194e^-5	0.546	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7921416	2L_7921416_SNP [dm3] 2L_7921416_SNP [dm6]	T	C	1.207e^-5	0.546	INTRON Snoo
3R	20240459	3R_20240459_DEL [dm3] 3R_24414737_DEL [dm6]	TT	C	1.218e^-5	0.546	INTRON nAChRalpha1
2L	11500295	2L_11500295_SNP [dm3] 2L_11500295_SNP [dm6]	T	C	1.224e^-5	0.546	INTERGENIC
2L	13711463	2L_13711463_SNP [dm3] 2L_13711463_SNP [dm6]	A	C	1.242e^-5	0.546	DOWNSTREAM CG7311 INTRON CG31814
2R	14094429	2R_14094429_SNP [dm3] 2R_18206924_SNP [dm6]	A	C	1.289e^-5	0.546	UPSTREAM CG30114 INTERGENIC
3R	13433845	3R_13433845_SNP [dm3] 3R_17608123_SNP [dm6]	C	T	1.296e^-5	0.546	INTRON sll
3L	16494315	3L_16494315_SNP [dm3] 3L_16501215_SNP [dm6]	A	T	1.309e^-5	0.546	DOWNSTREAM st & 1 other INTRON CG43373
2R	14162595	2R_14162595_SNP [dm3] 2R_18275090_SNP [dm6]	C	T	1.345e^-5	0.548	DOWNSTREAM Ote INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11191259	3L_11191259_SNP [dm3] 3L_11198159_SNP [dm6]	T	A	1.389e^-5	0.549	UPSTREAM GlcAT-P DOWNSTREAM Plod INTERGENIC
2L	6844638	2L_6844638_SNP [dm3] 2L_6844638_SNP [dm6]	G	A	1.404e^-5	0.549	INTERGENIC
3R	20294175	3R_20294175_SNP [dm3] 3R_24468453_SNP [dm6]	A	T	1.554e^-5	0.588	UPSTREAM CG31128 INTERGENIC
2L	6275077	2L_6275077_SNP [dm3] 2L_6275077_SNP [dm6]	C	T	1.584e^-5	0.588	INTRON Ddr
3R	20254532	3R_20254532_SNP [dm3] 3R_24428810_SNP [dm6]	A	C	1.599e^-5	0.588	INTRON nAChRalpha1
3R	20240492	3R_20240492_INS [dm3] 3R_24414770_INS [dm6]	A	ATA	1.631e^-5	0.588	INTRON nAChRalpha1
2L	3398061	2L_3398061_SNP [dm3] 2L_3398061_SNP [dm6]	A	T	1.704e^-5	0.593	START_GAINED CG34175 UTR_5_PRIME CG34175 UPSTREAM CR44792
3L	9025282	3L_9025282_INS [dm3] 3L_9032182_INS [dm6]	T	TGACTATACT	1.708e^-5	0.593	INTERGENIC	TF binding site mE1_TFBS_cad
X	17190938	X_17190938_DEL [dm3] X_17296905_DEL [dm6]	AA	A	1.744e^-5	0.595	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl
X	18940033	X_18940033_SNP [dm3] X_19046000_SNP [dm6]	T	C	1.864e^-5	0.624	INTERGENIC
X	7783657	X_7783657_SNP [dm3] X_7889624_SNP [dm6]	G	T	1.972e^-5	0.642	NON_SYNONYMOUS_CODING Nek2 UPSTREAM CG10932	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3R	15464535	3R_15464535_SNP [dm3] 3R_19638813_SNP [dm6]	T	G	1.984e^-5	0.642	INTRON subdued
X	6726745	X_6726745_SNP [dm3] X_6832712_SNP [dm6]	G	T	2.096e^-5	0.651	UPSTREAM CG12796 INTRON nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5696255	3L_5696255_SNP [dm3] 3L_5703155_SNP [dm6]	A	G	2.136e^-5	0.651	INTRON sif
3L	7952540	3L_7952540_SNP [dm3] 3L_7959440_SNP [dm6]	A	G	2.240e^-5	0.651	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12683852	3L_12683852_SNP [dm3] 3L_12690752_SNP [dm6]	T	G	2.260e^-5	0.651	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10375523	3R_10375523_SNP [dm3] 3R_14549801_SNP [dm6]	G	A	2.298e^-5	0.651	INTRON Pde6
X	17740918	X_17740918_SNP [dm3] X_17846885_SNP [dm6]	C	A	2.326e^-5	0.651	INTRON Ucp4A	TF binding site mE1_TFBS_chinmo
2L	7921614	2L_7921614_SNP [dm3] 2L_7921614_SNP [dm6]	A	T	2.350e^-5	0.651	INTRON Snoo
3R	13165425	3R_13165425_SNP [dm3] 3R_17339703_SNP [dm6]	C	G	2.360e^-5	0.651	INTRON beat-IIa
2L	5163542	2L_5163542_SNP [dm3] 2L_5163542_SNP [dm6]	A	G	2.369e^-5	0.651	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	5163548	2L_5163548_SNP [dm3] 2L_5163548_SNP [dm6]	C	A	2.369e^-5	0.651	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	22739663	3R_22739663_SNP [dm3] 3R_26913941_SNP [dm6]	C	A	2.429e^-5	0.651	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5163535	2L_5163535_SNP [dm3] 2L_5163535_SNP [dm6]	A	G	2.485e^-5	0.651	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	17046728	3L_17046728_SNP [dm3] 3L_17053628_SNP [dm6]	T	A	2.487e^-5	0.651	INTRON rogdi	TF binding site BDTNP1_TFBS_da
2R	6747125	2R_6747125_SNP [dm3] 2R_10859620_SNP [dm6]	T	C	2.497e^-5	0.651	UPSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl
3R	21458417	3R_21458417_SNP [dm3] 3R_25632695_SNP [dm6]	G	A	2.542e^-5	0.652	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	18426330	2R_18426330_SNP [dm3] 2R_22538825_SNP [dm6]	T	C	2.573e^-5	0.652	INTRON px
2L	11193602	2L_11193602_SNP [dm3] 2L_11193602_SNP [dm6]	T	G	2.744e^-5	0.675	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da
3R	16585635	3R_16585635_SNP [dm3] 3R_20759913_SNP [dm6]	A	C	2.769e^-5	0.675	INTRON Syp & 1 other
2L	14785903	2L_14785903_SNP [dm3] 2L_14785903_SNP [dm6]	C	A	2.789e^-5	0.675	INTERGENIC
3L	15162552	3L_15162552_SNP [dm3] 3L_15169452_SNP [dm6]	C	T	2.829e^-5	0.675	INTERGENIC
3R	15822284	3R_15822284_SNP [dm3] 3R_19996562_SNP [dm6]	C	T	2.878e^-5	0.675	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12851060	3R_12851060_SNP [dm3] 3R_17025338_SNP [dm6]	A	G	2.899e^-5	0.675	INTRON Pxd
2L	6712637	2L_6712637_SNP [dm3] 2L_6712637_SNP [dm6]	C	T	2.915e^-5	0.675	SYNONYMOUS_CODING AkhR	TF binding site mE1_TFBS_chinmo
2L	14771124	2L_14771124_SNP [dm3] 2L_14771124_SNP [dm6]	T	G	3.009e^-5	0.684	INTERGENIC
3R	15425103	3R_15425103_SNP [dm3] 3R_19599381_SNP [dm6]	A	G	3.049e^-5	0.684	UPSTREAM Cpr92A INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6274977	2L_6274977_SNP [dm3] 2L_6274977_SNP [dm6]	G	A	3.062e^-5	0.684	INTRON Ddr
3R	4223289	3R_4223289_SNP [dm3] 3R_8397567_SNP [dm6]	G	T	3.231e^-5	0.698	SYNONYMOUS_CODING CG45263
2L	7196077	2L_7196077_SNP [dm3] 2L_7196077_SNP [dm6]	G	A	3.278e^-5	0.698	INTRON CG4502
X	19991073	X_19991073_SNP [dm3] X_20097040_SNP [dm6]	C	T	3.307e^-5	0.698	UPSTREAM CG42581 INTERGENIC
2R	14222021	2R_14222021_SNP [dm3] 2R_18334516_SNP [dm6]	T	C	3.308e^-5	0.698	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14216667	2R_14216667_DEL [dm3] 2R_18329162_DEL [dm6]	ACTGG	A	3.357e^-5	0.698	INTRON sbb
2R	7399832	2R_7399832_SNP [dm3] 2R_11512327_SNP [dm6]	C	T	3.358e^-5	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20223950	3R_20223950_SNP [dm3] 3R_24398228_SNP [dm6]	T	G	3.385e^-5	0.698	UTR_3_PRIME nAChRalpha1
2L	16726544	2L_16726544_SNP [dm3] 2L_16726544_SNP [dm6]	A	T	3.478e^-5	0.709	INTRON VhaSFD
2L	6410682	2L_6410682_SNP [dm3] 2L_6410682_SNP [dm6]	T	C	3.544e^-5	0.711	INTRON CG42368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11813852	2L_11813852_SNP [dm3] 2L_11813852_SNP [dm6]	G	T	3.582e^-5	0.711	UPSTREAM CycY DOWNSTREAM Pde1c INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	7852697	3L_7852697_SNP [dm3] 3L_7859597_SNP [dm6]	T	C	3.611e^-5	0.711	INTRON Pdp1
3L	6292509	3L_6292509_SNP [dm3] 3L_6299409_SNP [dm6]	A	T	3.637e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5706169	3L_5706169_SNP [dm3] 3L_5713069_SNP [dm6]	C	A	3.731e^-5	0.721	UPSTREAM CG44521 INTRON sif
3R	15264725	3R_15264725_SNP [dm3] 3R_19439003_SNP [dm6]	T	C	3.945e^-5	0.727	INTRON CG31221
2L	13442132	2L_13442132_DEL [dm3] 2L_13442132_DEL [dm6]	AACTTCGT	A	4.078e^-5	0.727	INTRON CG42784 EXON CR45683
3R	10385133	3R_10385133_SNP [dm3] 3R_14559411_SNP [dm6]	T	C	4.143e^-5	0.727	SYNONYMOUS_CODING CG14854
2L	11500325	2L_11500325_SNP [dm3] 2L_11500325_SNP [dm6]	A	C	4.153e^-5	0.727	INTERGENIC
2L	6125629	2L_6125629_SNP [dm3] 2L_6125629_SNP [dm6]	T	C	4.191e^-5	0.727	SYNONYMOUS_CODING Arpc4 DOWNSTREAM stai & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11172099	X_11172099_SNP [dm3] X_11278066_SNP [dm6]	C	T	4.196e^-5	0.727	INTRON CG44422
3R	21256690	3R_21256690_SNP [dm3] 3R_25430968_SNP [dm6]	C	T	4.207e^-5	0.727	INTRON Fur1
3R	10374096	3R_10374096_SNP [dm3] 3R_14548374_SNP [dm6]	C	G	4.216e^-5	0.727	INTRON Pde6
3L	7897307	3L_7897307_SNP [dm3] 3L_7904207_SNP [dm6]	A	G	4.248e^-5	0.727	UPSTREAM pbl INTRON pbl
3L	15653347	3L_15653347_SNP [dm3] 3L_15660247_SNP [dm6]	A	T	4.303e^-5	0.727	UTR_3_PRIME Eig71Ei UPSTREAM Eig71Eh DOWNSTREAM Eig71Ej & 1 other
2L	13351897	2L_13351897_SNP [dm3] 2L_13351897_SNP [dm6]	A	G	4.356e^-5	0.727	INTRON CG9395	TF binding site mE1_TFBS_cad
2L	8586276	2L_8586276_SNP [dm3] 2L_8586276_SNP [dm6]	C	A	4.362e^-5	0.727	INTRON Sema-1a
3R	13018007	3R_13018007_SNP [dm3] 3R_17192285_SNP [dm6]	A	T	4.401e^-5	0.727	INTRON Mur89F
3R	19865181	3R_19865181_SNP [dm3] 3R_24039459_SNP [dm6]	T	C	4.467e^-5	0.727	UPSTREAM Miro INTRON spas	TF binding site BDTNP1_TFBS_dl
2R	20184166	2R_20184166_SNP [dm3] 2R_24296643_SNP [dm6]	T	C	4.540e^-5	0.727	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3398094	2L_3398094_SNP [dm3] 2L_3398094_SNP [dm6]	G	T	4.543e^-5	0.727	UTR_5_PRIME CG34175 UPSTREAM CR44792
3R	12842074	3R_12842074_SNP [dm3] 3R_17016352_SNP [dm6]	G	C	4.622e^-5	0.727	UPSTREAM Pxd INTRON Pxd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9949230	3L_9949230_SNP [dm3] 3L_9956130_SNP [dm6]	T	C	4.624e^-5	0.727	INTRON CG34356
3L	12356544	3L_12356544_SNP [dm3] 3L_12363444_SNP [dm6]	T	A	4.644e^-5	0.727	INTERGENIC
2L	7923839	2L_7923839_SNP [dm3] 2L_7923839_SNP [dm6]	T	A	4.724e^-5	0.727	INTRON Snoo
3L	17405202	3L_17405202_SNP [dm3] 3L_17412102_SNP [dm6]	A	G	4.756e^-5	0.727	INTRON blot	TF binding site BDTNP1_TFBS_Med
3L	18205502	3L_18205502_SNP [dm3] 3L_18212402_SNP [dm6]	A	T	4.763e^-5	0.727	INTERGENIC
3R	21454260	3R_21454260_SNP [dm3] 3R_25628538_SNP [dm6]	C	A	4.849e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5562661	2L_5562661_SNP [dm3] 2L_5562661_SNP [dm6]	C	T	4.995e^-5	0.727	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18174231	X_18174231_SNP [dm3] X_18280198_SNP [dm6]	T	C	5.002e^-5	0.727	INTRON upd3
3R	14871217	3R_14871217_SNP [dm3] 3R_19045495_SNP [dm6]	G	T	5.067e^-5	0.727	UTR_3_PRIME cdi DOWNSTREAM cdi & 1 other
X	19991075	X_19991075_SNP [dm3] X_20097042_SNP [dm6]	C	G	5.068e^-5	0.727	UPSTREAM CG42581 INTERGENIC
X	5725023	X_5725023_SNP [dm3] X_5830990_SNP [dm6]	T	C	5.164e^-5	0.727	DOWNSTREAM CR43264 INTRON CG15765
X	3860810	X_3860810_SNP [dm3] X_3966777_SNP [dm6]	A	G	5.234e^-5	0.727	SYNONYMOUS_CODING CG6428	TF binding site mE1_TFBS_sens
X	16444828	X_16444828_SNP [dm3] X_16550795_SNP [dm6]	G	A	5.240e^-5	0.727	INTRON Arp2
3L	9025279	3L_9025279_SNP [dm3] 3L_9032179_SNP [dm6]	T	A	5.267e^-5	0.727	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14042988	3R_14042988_SNP [dm3] 3R_18217266_SNP [dm6]	T	C	5.328e^-5	0.727	SYNONYMOUS_CODING CG14314 DOWNSTREAM CG7183	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20431728	X_20431728_SNP [dm3] X_20560701_SNP [dm6]	G	A	5.364e^-5	0.727	INTRON RunxB
3L	7857013	3L_7857013_SNP [dm3] 3L_7863913_SNP [dm6]	T	G	5.376e^-5	0.727	INTRON Pdp1	TF binding site mE1_TFBS_Trl
2R	14221996	2R_14221996_SNP [dm3] 2R_18334491_SNP [dm6]	A	G	5.439e^-5	0.727	INTRON sbb	TF binding site mE1_TFBS_HSA
X	18939870	X_18939870_SNP [dm3] X_19045837_SNP [dm6]	G	T	5.461e^-5	0.727	INTERGENIC
3R	10371877	3R_10371877_SNP [dm3] 3R_14546155_SNP [dm6]	G	C	5.495e^-5	0.727	INTRON Pde6
2L	9970186	2L_9970186_SNP [dm3] 2L_9970186_SNP [dm6]	T	C	5.535e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13429284	3R_13429284_SNP [dm3] 3R_17603562_SNP [dm6]	A	T	5.544e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10375380	3R_10375380_SNP [dm3] 3R_14549658_SNP [dm6]	T	G	5.562e^-5	0.727	INTRON Pde6
3L	8568056	3L_8568056_SNP [dm3] 3L_8574956_SNP [dm6]	G	C	5.633e^-5	0.727	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17040223	3L_17040223_SNP [dm3] 3L_17047123_SNP [dm6]	A	G	5.633e^-5	0.727	INTRON TpnC73F
2L	14811390	2L_14811390_SNP [dm3] 2L_14811390_SNP [dm6]	G	A	5.662e^-5	0.727	NON_SYNONYMOUS_CODING CG33309
2L	14778434	2L_14778434_SNP [dm3] 2L_14778434_SNP [dm6]	C	T	5.783e^-5	0.727	INTERGENIC
2R	13364994	2R_13364994_SNP [dm3] 2R_17477489_SNP [dm6]	T	A	5.814e^-5	0.727	UPSTREAM veil DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	6292497	3L_6292497_SNP [dm3] 3L_6299397_SNP [dm6]	C	T	5.814e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14811319	2L_14811319_SNP [dm3] 2L_14811319_SNP [dm6]	A	T	5.977e^-5	0.727	SYNONYMOUS_CODING CG33309
3R	15411738	3R_15411738_SNP [dm3] 3R_19586016_SNP [dm6]	C	T	5.987e^-5	0.727	SYNONYMOUS_CODING Dys UPSTREAM snoRNA:Me18S-A1374 INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20223952	3R_20223952_SNP [dm3] 3R_24398230_SNP [dm6]	G	A	5.989e^-5	0.727	UTR_3_PRIME nAChRalpha1
2R	18426328	2R_18426328_SNP [dm3] 2R_22538823_SNP [dm6]	C	T	6.034e^-5	0.727	INTRON px
2L	13711359	2L_13711359_SNP [dm3] 2L_13711359_SNP [dm6]	C	T	6.046e^-5	0.727	DOWNSTREAM CG7311 INTRON CG31814
2L	11865692	2L_11865692_SNP [dm3] 2L_11865692_SNP [dm6]	A	G	6.066e^-5	0.727	INTRON Pde1c
2R	14223995	2R_14223995_SNP [dm3] 2R_18336490_SNP [dm6]	G	A	6.127e^-5	0.727	INTRON sbb
2R	14222063	2R_14222063_SNP [dm3] 2R_18334558_SNP [dm6]	C	T	6.200e^-5	0.727	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	15278653	3R_15278653_SNP [dm3] 3R_19452931_SNP [dm6]	G	A	6.208e^-5	0.727	INTRON CG31221
3L	9675611	3L_9675611_SNP [dm3] 3L_9682511_SNP [dm6]	C	T	6.213e^-5	0.727	SYNONYMOUS_CODING alphaTub67C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16781706	X_16781706_SNP [dm3] X_16887673_SNP [dm6]	A	C	6.281e^-5	0.727	SYNONYMOUS_CODING CG4880	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
2L	6125650	2L_6125650_SNP [dm3] 2L_6125650_SNP [dm6]	T	C	6.335e^-5	0.727	SYNONYMOUS_CODING Arpc4 DOWNSTREAM stai & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4136280	3L_4136280_SNP [dm3] 3L_4136280_SNP [dm6]	G	C	6.358e^-5	0.727	UPSTREAM RfC4 DOWNSTREAM Rop INTERGENIC
3R	18936694	3R_18936694_SNP [dm3] 3R_23110972_SNP [dm6]	T	A	6.438e^-5	0.727	INTRON CG13830
2L	6410670	2L_6410670_SNP [dm3] 2L_6410670_SNP [dm6]	T	C	6.439e^-5	0.727	INTRON CG42368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13444501	3R_13444501_SNP [dm3] 3R_17618779_SNP [dm6]	C	G	6.450e^-5	0.727	UTR_5_PRIME CG14324 UPSTREAM CG14326 & 2 others DOWNSTREAM tRNA:V3b:90BC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4134597	3L_4134597_SNP [dm3] 3L_4134597_SNP [dm6]	C	G	6.456e^-5	0.727	UPSTREAM ens DOWNSTREAM RfC4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	21144612	X_21144612_SNP [dm3] X_21273585_SNP [dm6]	A	T	6.480e^-5	0.727	INTRON CG32521
3L	9050783	3L_9050783_SNP [dm3] 3L_9057683_SNP [dm6]	G	C	6.529e^-5	0.727	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_Trl
3R	19865313	3R_19865313_SNP [dm3] 3R_24039591_SNP [dm6]	T	C	6.545e^-5	0.727	SPLICE_SITE_REGION spas UPSTREAM Miro INTRON spas
3L	11378277	3L_11378277_SNP [dm3] 3L_11385177_SNP [dm6]	T	C	6.638e^-5	0.727	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
2L	5563214	2L_5563214_SNP [dm3] 2L_5563214_SNP [dm6]	G	T	6.684e^-5	0.727	INTRON GluRIIB	TF binding site mE1_TFBS_cad
X	18174227	X_18174227_SNP [dm3] X_18280194_SNP [dm6]	T	G	6.762e^-5	0.727	INTRON upd3
3R	11998561	3R_11998561_SNP [dm3] 3R_16172839_SNP [dm6]	T	C	6.803e^-5	0.727	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14804832	3R_14804832_SNP [dm3] 3R_18979110_SNP [dm6]	G	A	6.811e^-5	0.727	SYNONYMOUS_CODING Smu1 UPSTREAM CG12269	TF binding site mE1_TFBS_sens
3L	11378275	3L_11378275_SNP [dm3] 3L_11385175_SNP [dm6]	G	A	6.946e^-5	0.727	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3L	5054695	3L_5054695_SNP [dm3] 3L_5054695_SNP [dm6]	T	C	6.948e^-5	0.727	INTRON Con
2L	12765097	2L_12765097_SNP [dm3] 2L_12765097_SNP [dm6]	T	C	6.952e^-5	0.727	INTERGENIC
2L	13711330	2L_13711330_INS [dm3] 2L_13711330_INS [dm6]	A	AAA	6.954e^-5	0.727	DOWNSTREAM CG7311 INTRON CG31814
3L	2075175	3L_2075175_SNP [dm3] 3L_2075175_SNP [dm6]	T	G	7.073e^-5	0.727	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14795983	2L_14795983_SNP [dm3] 2L_14795983_SNP [dm6]	T	A	7.111e^-5	0.727	NON_SYNONYMOUS_CODING CG18420
3R	12083996	3R_12083996_SNP [dm3] 3R_16258274_SNP [dm6]	G	A	7.130e^-5	0.727	SYNONYMOUS_CODING tara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16444797	X_16444797_SNP [dm3] X_16550764_SNP [dm6]	G	A	7.135e^-5	0.727	INTRON Arp2
2R	13569587	2R_13569587_SNP [dm3] 2R_17682082_SNP [dm6]	T	C	7.142e^-5	0.727	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	5339856	3L_5339856_SNP [dm3] 3L_5346756_SNP [dm6]	T	G	7.174e^-5	0.727	INTRON lama
3L	10983642	3L_10983642_SNP [dm3] 3L_10990542_SNP [dm6]	C	T	7.212e^-5	0.727	INTRON klu
2R	18296240	2R_18296240_SNP [dm3] 2R_22408735_SNP [dm6]	C	T	7.216e^-5	0.727	DOWNSTREAM qkr58E-3 & 1 other INTRON ventrally-expressed-protein-D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13711381	2L_13711381_SNP [dm3] 2L_13711381_SNP [dm6]	T	G	7.230e^-5	0.727	DOWNSTREAM CG7311 INTRON CG31814
3L	6974313	3L_6974313_SNP [dm3] 3L_6981213_SNP [dm6]	C	A	7.255e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3031662	3L_3031662_SNP [dm3] 3L_3031662_SNP [dm6]	G	C	7.262e^-5	0.727	INTERGENIC
2L	11500368	2L_11500368_SNP [dm3] 2L_11500368_SNP [dm6]	A	T	7.298e^-5	0.727	INTERGENIC
3R	22437741	3R_22437741_SNP [dm3] 3R_26612019_SNP [dm6]	A	C	7.514e^-5	0.727	INTERGENIC
2L	3397926	2L_3397926_SNP [dm3] 2L_3397926_SNP [dm6]	C	A	7.615e^-5	0.727	UPSTREAM CG34175 & 1 other INTERGENIC
X	19932661	X_19932661_SNP [dm3] X_20038628_SNP [dm6]	A	G	7.625e^-5	0.727	INTRON Dop2R
3R	12851027	3R_12851027_SNP [dm3] 3R_17025305_SNP [dm6]	C	T	7.676e^-5	0.727	INTRON Pxd
3R	16700655	3R_16700655_SNP [dm3] 3R_20874933_SNP [dm6]	A	G	7.887e^-5	0.727	DOWNSTREAM TotB INTERGENIC
3L	15162491	3L_15162491_SNP [dm3] 3L_15169391_SNP [dm6]	A	G	7.946e^-5	0.727	INTERGENIC
3R	12852449	3R_12852449_SNP [dm3] 3R_17026727_SNP [dm6]	G	A	7.981e^-5	0.727	SYNONYMOUS_CODING Pxd
X	8051524	X_8051524_SNP [dm3] X_8157491_SNP [dm6]	C	T	7.999e^-5	0.727	UPSTREAM GIIIspla2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	10055344	2L_10055344_SNP [dm3] 2L_10055344_SNP [dm6]	T	C	8.033e^-5	0.727	SYNONYMOUS_CODING Cpr31A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12683921	3L_12683921_SNP [dm3] 3L_12690821_SNP [dm6]	C	T	8.077e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	8586504	2L_8586504_SNP [dm3] 2L_8586504_SNP [dm6]	A	G	8.118e^-5	0.727	INTRON Sema-1a
3R	10141674	3R_10141674_SNP [dm3] 3R_14315952_SNP [dm6]	A	G	8.310e^-5	0.727	UPSTREAM pr-set7 DOWNSTREAM Crz INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12682695	3L_12682695_SNP [dm3] 3L_12689595_SNP [dm6]	C	A	8.322e^-5	0.727	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	14866223	3R_14866223_SNP [dm3] 3R_19040501_SNP [dm6]	A	G	8.333e^-5	0.727	SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18178307	X_18178307_INS [dm3] X_18284274_INS [dm6]	T	TA	8.352e^-5	0.727	UTR_3_PRIME upd3
2L	10129466	2L_10129466_SNP [dm3] 2L_10129466_SNP [dm6]	T	A	8.401e^-5	0.727	INTRON CG44153	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13284019	3L_13284019_SNP [dm3] 3L_13290919_SNP [dm6]	A	G	8.425e^-5	0.727	DOWNSTREAM CR43912 EXON CR43912
2L	12631462	2L_12631462_SNP [dm3] 2L_12631462_SNP [dm6]	C	T	8.437e^-5	0.727	INTRON Ref2
2L	8586388	2L_8586388_SNP [dm3] 2L_8586388_SNP [dm6]	A	T	8.452e^-5	0.727	INTRON Sema-1a
2R	12343737	2R_12343737_SNP [dm3] 2R_16456232_SNP [dm6]	A	T	8.533e^-5	0.727	INTERGENIC
3R	18978326	3R_18978326_SNP [dm3] 3R_23152604_SNP [dm6]	A	C	8.569e^-5	0.727	UTR_3_PRIME unk DOWNSTREAM unk
3R	11998650	3R_11998650_SNP [dm3] 3R_16172928_SNP [dm6]	T	A	8.574e^-5	0.727	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9970208	2L_9970208_SNP [dm3] 2L_9970208_SNP [dm6]	C	T	8.582e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11410036	3R_11410036_SNP [dm3] 3R_15584314_SNP [dm6]	A	G	8.602e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10388079	3R_10388079_SNP [dm3] 3R_14562357_SNP [dm6]	C	G	8.641e^-5	0.727	START_GAINED CG14851 UTR_5_PRIME CG14851 DOWNSTREAM CG14850	TF binding site mE1_TFBS_cad
2L	18332213	2L_18332213_SNP [dm3] 2L_18332213_SNP [dm6]	A	G	8.761e^-5	0.727	INTRON Fas3	TF binding site BDTNP1_TFBS_da
2R	10995327	2R_10995327_SNP [dm3] 2R_15107822_SNP [dm6]	G	C	8.763e^-5	0.727	INTERGENIC
2L	6275107	2L_6275107_SNP [dm3] 2L_6275107_SNP [dm6]	T	G	8.826e^-5	0.727	INTRON Ddr
X	3458006	X_3458006_SNP [dm3] X_3563973_SNP [dm6]	C	T	8.920e^-5	0.727	INTRON CG32791 & 1 other
3R	19619584	3R_19619584_SNP [dm3] 3R_23793862_SNP [dm6]	T	C	8.974e^-5	0.727	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_sens
2R	13315722	2R_13315722_SNP [dm3] 2R_17428217_SNP [dm6]	G	A	9.021e^-5	0.727	SYNONYMOUS_CODING Mtap UPSTREAM CG6550	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19865311	3R_19865311_SNP [dm3] 3R_24039589_SNP [dm6]	A	T	9.038e^-5	0.727	SPLICE_SITE_REGION spas UPSTREAM Miro INTRON spas
2L	12631558	2L_12631558_SNP [dm3] 2L_12631558_SNP [dm6]	A	G	9.058e^-5	0.727	INTRON Ref2
3R	13429270	3R_13429270_SNP [dm3] 3R_17603548_SNP [dm6]	A	T	9.063e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13908243	3R_13908243_DEL [dm3] 3R_18082521_DEL [dm6]	TT	T	9.085e^-5	0.727	UTR_3_PRIME CG14317	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad
3R	18485073	3R_18485073_SNP [dm3] 3R_22659351_SNP [dm6]	T	C	9.213e^-5	0.727	INTRON CG45058
2L	13092296	2L_13092296_SNP [dm3] 2L_13092296_SNP [dm6]	T	G	9.223e^-5	0.727	INTERGENIC
3L	17044045	3L_17044045_DEL [dm3] 3L_17050945_DEL [dm6]	AATGCTTTTGTTTTTATAA...	A	9.225e^-5	0.727	UPSTREAM rogdi INTRON rogdi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3R	13435225	3R_13435225_SNP [dm3] 3R_17609503_SNP [dm6]	C	T	9.258e^-5	0.727	SYNONYMOUS_CODING CG14329 DOWNSTREAM sll
2R	17478376	2R_17478376_SNP [dm3] 2R_21590871_SNP [dm6]	G	A	9.275e^-5	0.727	NON_SYNONYMOUS_CODING CG33225
3L	9949257	3L_9949257_SNP [dm3] 3L_9956157_SNP [dm6]	G	A	9.294e^-5	0.727	INTRON CG34356
2L	6125638	2L_6125638_SNP [dm3] 2L_6125638_SNP [dm6]	A	G	9.311e^-5	0.727	SYNONYMOUS_CODING Arpc4 DOWNSTREAM stai & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3901591	2R_3901591_MNP [dm3] 2R_8014086_MNP [dm6]	GATGA	TGCAC	9.328e^-5	0.727	UPSTREAM CG14762 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	15304511	X_15304511_SNP [dm3] X_15410478_SNP [dm6]	C	G	9.388e^-5	0.727	INTRON Cngl
2L	12631374	2L_12631374_SNP [dm3] 2L_12631374_SNP [dm6]	C	A	9.463e^-5	0.727	INTRON Ref2
2L	4878122	2L_4878122_SNP [dm3] 2L_4878122_SNP [dm6]	T	C	9.464e^-5	0.727	UTR_3_PRIME Cf2
3L	17043609	3L_17043609_SNP [dm3] 3L_17050509_SNP [dm6]	G	A	9.470e^-5	0.727	SPLICE_SITE_REGION rogdi UPSTREAM rogdi INTRON rogdi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
X	19932663	X_19932663_SNP [dm3] X_20038630_SNP [dm6]	G	A	9.499e^-5	0.727	INTRON Dop2R
2L	13711325	2L_13711325_MNP [dm3] 2L_13711325_MNP [dm6]	GCA	TTT	9.621e^-5	0.727	DOWNSTREAM CG7311 INTRON CG31814
X	12652739	X_12652739_SNP [dm3] X_12758706_SNP [dm6]	G	A	9.648e^-5	0.727	SYNONYMOUS_CODING ade5	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13445946	3R_13445946_SNP [dm3] 3R_17620224_SNP [dm6]	A	C	9.672e^-5	0.727	UPSTREAM tRNA:A:90C DOWNSTREAM CG14326 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3398063	2L_3398063_SNP [dm3] 2L_3398063_SNP [dm6]	A	G	9.763e^-5	0.727	UTR_5_PRIME CG34175 UPSTREAM CR44792
2L	3398070	2L_3398070_SNP [dm3] 2L_3398070_SNP [dm6]	T	C	9.844e^-5	0.727	UTR_5_PRIME CG34175 UPSTREAM CR44792
3R	11410037	3R_11410037_SNP [dm3] 3R_15584315_SNP [dm6]	T	C	9.898e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19807366	3L_19807366_SNP [dm3] 3L_19814266_SNP [dm6]	A	T	9.997e^-5	0.727	UPSTREAM Cyp305a1 INTRON cyc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13569669	2R_13569669_SNP [dm3] 2R_17682164_SNP [dm6]	T	C	1.001e^-4	0.727	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	13438177	3R_13438177_SNP [dm3] 3R_17612455_SNP [dm6]	A	C	1.008e^-4	0.727	UPSTREAM Edg91 & 1 other INTERGENIC
3L	15162531	3L_15162531_SNP [dm3] 3L_15169431_SNP [dm6]	T	A	1.010e^-4	0.727	INTERGENIC
2L	13710151	2L_13710151_SNP [dm3] 2L_13710151_SNP [dm6]	C	A	1.014e^-4	0.727	SYNONYMOUS_CODING CG7311 UTR_3_PRIME CG7311 INTRON CG31814	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7183762	2L_7183762_MNP [dm3] 2L_7183762_MNP [dm6]	GCT	ATA	1.016e^-4	0.727	INTRON CG4495	TF binding site BDTNP1_TFBS_twi
3L	6875572	3L_6875572_SNP [dm3] 3L_6882472_SNP [dm6]	G	A	1.019e^-4	0.727	DOWNSTREAM CR45416 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10121091	3L_10121091_SNP [dm3] 3L_10127991_SNP [dm6]	A	T	1.026e^-4	0.727	INTRON dpr6
3L	1370689	3L_1370689_SNP [dm3] 3L_1370689_SNP [dm6]	A	C	1.027e^-4	0.727	UTR_5_PRIME ru INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11378272	3L_11378272_INS [dm3] 3L_11385172_INS [dm6]	T	TA	1.027e^-4	0.727	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11378274	3L_11378274_SNP [dm3] 3L_11385174_SNP [dm6]	A	C	1.027e^-4	0.727	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3R	13441268	3R_13441268_SNP [dm3] 3R_17615546_SNP [dm6]	G	T	1.029e^-4	0.727	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	13711396	2L_13711396_SNP [dm3] 2L_13711396_SNP [dm6]	C	G	1.035e^-4	0.727	DOWNSTREAM CG7311 INTRON CG31814
3L	17046949	3L_17046949_SNP [dm3] 3L_17053849_SNP [dm6]	A	G	1.035e^-4	0.727	INTRON rogdi	TF binding site BDTNP1_TFBS_da
3R	12845451	3R_12845451_SNP [dm3] 3R_17019729_SNP [dm6]	C	G	1.040e^-4	0.727	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7181313	2L_7181313_SNP [dm3] 2L_7181313_SNP [dm6]	T	G	1.051e^-4	0.727	UPSTREAM CG4495 INTERGENIC
2L	7921600	2L_7921600_SNP [dm3] 2L_7921600_SNP [dm6]	A	G	1.069e^-4	0.727	INTRON Snoo
X	14013063	X_14013063_SNP [dm3] X_14119030_SNP [dm6]	G	T	1.077e^-4	0.727	INTERGENIC
3R	25540338	3R_25540338_SNP [dm3] 3R_29714616_SNP [dm6]	T	G	1.079e^-4	0.727	SYNONYMOUS_CODING Obp99d UPSTREAM CR45569 DOWNSTREAM Dup99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	14804597	3R_14804597_SNP [dm3] 3R_18978875_SNP [dm6]	C	G	1.085e^-4	0.727	UPSTREAM CG12269 DOWNSTREAM Smu1 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
2L	5563211	2L_5563211_SNP [dm3] 2L_5563211_SNP [dm6]	C	T	1.088e^-4	0.727	INTRON GluRIIB	TF binding site mE1_TFBS_cad
3L	7857044	3L_7857044_DEL [dm3] 3L_7863944_DEL [dm6]	TTC	T	1.092e^-4	0.727	INTRON Pdp1
2L	13442397	2L_13442397_SNP [dm3] 2L_13442397_SNP [dm6]	A	C	1.095e^-4	0.727	INTRON CG42784 EXON CR45683
X	17340171	X_17340171_SNP [dm3] X_17446138_SNP [dm6]	A	G	1.097e^-4	0.727	DOWNSTREAM p-cup INTERGENIC
2L	6288789	2L_6288789_SNP [dm3] 2L_6288789_SNP [dm6]	T	C	1.097e^-4	0.727	INTRON Ddr	TF binding site BDTNP1_TFBS_twi
3L	1592669	3L_1592669_SNP [dm3] 3L_1592669_SNP [dm6]	T	C	1.098e^-4	0.727	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11378269	3L_11378269_SNP [dm3] 3L_11385169_SNP [dm6]	C	G	1.102e^-4	0.727	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11378270	3L_11378270_SNP [dm3] 3L_11385170_SNP [dm6]	T	A	1.102e^-4	0.727	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
2L	6078286	2L_6078286_SNP [dm3] 2L_6078286_SNP [dm6]	A	C	1.103e^-4	0.727	UPSTREAM CR9162 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	7181217	2L_7181217_SNP [dm3] 2L_7181217_SNP [dm6]	C	G	1.121e^-4	0.727	INTERGENIC
3R	13429439	3R_13429439_SNP [dm3] 3R_17603717_SNP [dm6]	T	A	1.128e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4349640	3R_4349640_SNP [dm3] 3R_8523918_SNP [dm6]	G	A	1.130e^-4	0.727	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
3L	9027488	3L_9027488_SNP [dm3] 3L_9034388_SNP [dm6]	C	A	1.137e^-4	0.727	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2L	7132369	2L_7132369_DEL [dm3] 2L_7132369_DEL [dm6]	ATGGAATGTA	A	1.139e^-4	0.727	INTRON Pvf3
3R	21710315	3R_21710315_SNP [dm3] 3R_25884593_SNP [dm6]	A	C	1.143e^-4	0.727	INTRON SppL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10506472	3R_10506472_SNP [dm3] 3R_14680750_SNP [dm6]	C	G	1.144e^-4	0.727	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10129420	2L_10129420_SNP [dm3] 2L_10129420_SNP [dm6]	G	A	1.147e^-4	0.727	INTRON CG44153	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7924506	2L_7924506_SNP [dm3] 2L_7924506_SNP [dm6]	A	G	1.149e^-4	0.727	INTRON Snoo
3R	10374000	3R_10374000_SNP [dm3] 3R_14548278_SNP [dm6]	T	C	1.149e^-4	0.727	INTRON Pde6
3L	9027486	3L_9027486_SNP [dm3] 3L_9034386_SNP [dm6]	G	T	1.149e^-4	0.727	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3R	20224082	3R_20224082_SNP [dm3] 3R_24398360_SNP [dm6]	G	A	1.154e^-4	0.727	UTR_3_PRIME nAChRalpha1	TF binding site mE1_TFBS_kn
2R	7443293	2R_7443293_SNP [dm3] 2R_11555788_SNP [dm6]	G	A	1.158e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12682703	3L_12682703_SNP [dm3] 3L_12689603_SNP [dm6]	A	G	1.164e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	5758664	3R_5758664_SNP [dm3] 3R_9932942_SNP [dm6]	G	C	1.171e^-4	0.727	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10372361	3R_10372361_SNP [dm3] 3R_14546639_SNP [dm6]	A	C	1.175e^-4	0.727	INTRON Pde6
3L	13968103	3L_13968103_SNP [dm3] 3L_13975003_SNP [dm6]	C	A	1.175e^-4	0.727	INTRON Hsc70-1
X	4201039	X_4201039_SNP [dm3] X_4307006_SNP [dm6]	T	G	1.181e^-4	0.727	INTERGENIC
3R	10371810	3R_10371810_SNP [dm3] 3R_14546088_SNP [dm6]	A	T	1.186e^-4	0.727	INTRON Pde6
X	5817570	X_5817570_DEL [dm3] X_5923537_DEL [dm6]	AC	A	1.187e^-4	0.727	INTRON CG3726
X	16770015	X_16770015_SNP [dm3] X_16875982_SNP [dm6]	G	A	1.203e^-4	0.727	INTRON CG13003
3R	10385321	3R_10385321_SNP [dm3] 3R_14559599_SNP [dm6]	C	G	1.204e^-4	0.727	NON_SYNONYMOUS_CODING CG14854
2R	6545961	2R_6545961_SNP [dm3] 2R_10658456_SNP [dm6]	T	A	1.205e^-4	0.727	UPSTREAM CR44452 INTERGENIC
2R	3921028	2R_3921028_SNP [dm3] 2R_8033523_SNP [dm6]	T	C	1.208e^-4	0.727	INTRON Optix
2L	13711480	2L_13711480_SNP [dm3] 2L_13711480_SNP [dm6]	C	T	1.212e^-4	0.727	DOWNSTREAM CG7311 INTRON CG31814
2L	5232332	2L_5232332_SNP [dm3] 2L_5232332_SNP [dm6]	T	A	1.214e^-4	0.727	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17380410	2R_17380410_SNP [dm3] 2R_21492905_SNP [dm6]	T	G	1.218e^-4	0.727	INTRON Fkbp14
3L	5291531	3L_5291531_SNP [dm3] 3L_5298431_SNP [dm6]	G	T	1.222e^-4	0.727	INTERGENIC
3L	16860212	3L_16860212_SNP [dm3] 3L_16867112_SNP [dm6]	C	A	1.224e^-4	0.727	INTRON Lmpt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10118669	2L_10118669_SNP [dm3] 2L_10118669_SNP [dm6]	T	C	1.225e^-4	0.727	INTRON CG44153 & 1 other
2L	3701877	2L_3701877_SNP [dm3] 2L_3701877_SNP [dm6]	A	C	1.227e^-4	0.727	NON_SYNONYMOUS_CODING CG43145 UPSTREAM CR44311 DOWNSTREAM Sfp24C1 & 1 other
X	8051558	X_8051558_SNP [dm3] X_8157525_SNP [dm6]	A	T	1.229e^-4	0.727	UPSTREAM GIIIspla2 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	15313409	X_15313409_SNP [dm3] X_15419376_SNP [dm6]	C	G	1.231e^-4	0.727	INTRON Cngl
3R	13429415	3R_13429415_SNP [dm3] 3R_17603693_SNP [dm6]	T	A	1.236e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13486219	3L_13486219_SNP [dm3] 3L_13493119_SNP [dm6]	G	C	1.242e^-4	0.727	INTRON Tgi
X	16193018	X_16193018_SNP [dm3] X_16298985_SNP [dm6]	T	A	1.243e^-4	0.727	INTRON CG3632
3L	15162615	3L_15162615_SNP [dm3] 3L_15169515_SNP [dm6]	A	G	1.246e^-4	0.727	INTERGENIC
X	19991082	X_19991082_SNP [dm3] X_20097049_SNP [dm6]	G	T	1.246e^-4	0.727	UPSTREAM CG42581 INTERGENIC
2R	12150093	2R_12150093_SNP [dm3] 2R_16262588_SNP [dm6]	G	A	1.259e^-4	0.727	SYNONYMOUS_CODING fidipidine
2L	10356234	2L_10356234_SNP [dm3] 2L_10356234_SNP [dm6]	A	T	1.262e^-4	0.727	NON_SYNONYMOUS_CODING CG5367 UPSTREAM CG5045	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3398102	2L_3398102_SNP [dm3] 2L_3398102_SNP [dm6]	C	T	1.264e^-4	0.727	UTR_5_PRIME CG34175 UPSTREAM CR44792
3R	13165342	3R_13165342_SNP [dm3] 3R_17339620_SNP [dm6]	T	G	1.276e^-4	0.727	INTRON beat-IIa	TF binding site mE1_TFBS_sbb
3R	10387398	3R_10387398_SNP [dm3] 3R_14561676_SNP [dm6]	A	G	1.278e^-4	0.727	UPSTREAM CG14851 DOWNSTREAM CG14850 INTERGENIC
3L	7856998	3L_7856998_SNP [dm3] 3L_7863898_SNP [dm6]	T	A	1.280e^-4	0.727	INTRON Pdp1	TF binding site mE1_TFBS_Trl
2L	9701735	2L_9701735_SNP [dm3] 2L_9701735_SNP [dm6]	G	C	1.283e^-4	0.727	SYNONYMOUS_CODING pelo DOWNSTREAM CG31710	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17424076	2R_17424076_SNP [dm3] 2R_21536571_SNP [dm6]	G	T	1.285e^-4	0.727	DOWNSTREAM CG30287 INTRON Egfr & 1 other	TF binding site mE1_TFBS_sens
X	19991060	X_19991060_SNP [dm3] X_20097027_SNP [dm6]	C	T	1.287e^-4	0.727	UPSTREAM CG42581 INTERGENIC
3R	19863723	3R_19863723_SNP [dm3] 3R_24038001_SNP [dm6]	T	C	1.289e^-4	0.727	UTR_5_PRIME Miro UPSTREAM spas & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11500304	2L_11500304_SNP [dm3] 2L_11500304_SNP [dm6]	A	G	1.297e^-4	0.727	INTERGENIC
2R	14216661	2R_14216661_SNP [dm3] 2R_18329156_SNP [dm6]	T	C	1.297e^-4	0.727	INTRON sbb
3R	11998547	3R_11998547_SNP [dm3] 3R_16172825_SNP [dm6]	T	A	1.305e^-4	0.727	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5339862	3L_5339862_SNP [dm3] 3L_5346762_SNP [dm6]	C	T	1.308e^-4	0.727	INTRON lama
X	4807374	X_4807374_SNP [dm3] X_4913341_SNP [dm6]	C	T	1.313e^-4	0.727	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12848826	3R_12848826_SNP [dm3] 3R_17023104_SNP [dm6]	T	C	1.314e^-4	0.727	INTRON Pxd
2L	5563200	2L_5563200_SNP [dm3] 2L_5563200_SNP [dm6]	A	G	1.316e^-4	0.727	INTRON GluRIIB	TF binding site mE1_TFBS_cad
2L	5563182	2L_5563182_SNP [dm3] 2L_5563182_SNP [dm6]	G	A	1.317e^-4	0.727	INTRON GluRIIB	TF binding site mE1_TFBS_cad
3L	10503746	3L_10503746_SNP [dm3] 3L_10510646_SNP [dm6]	T	C	1.329e^-4	0.727	INTRON A2bp1
2R	1710751	2R_1710751_SNP [dm3] 2R_5823246_SNP [dm6]	T	C	1.331e^-4	0.727	INTRON dpr12	TF binding site mE1_TFBS_chinmo
2R	18598788	2R_18598788_SNP [dm3] 2R_22711283_SNP [dm6]	G	C	1.346e^-4	0.727	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
3R	19865141	3R_19865141_SNP [dm3] 3R_24039419_SNP [dm6]	T	G	1.347e^-4	0.727	UPSTREAM Miro INTRON spas	TF binding site BDTNP1_TFBS_dl
3L	15655139	3L_15655139_SNP [dm3] 3L_15662039_SNP [dm6]	T	C	1.351e^-4	0.727	NON_SYNONYMOUS_CODING CG43082 DOWNSTREAM Eig71Ek
3L	8751152	3L_8751152_SNP [dm3] 3L_8758052_SNP [dm6]	A	C	1.357e^-4	0.727	DOWNSTREAM CG6576 INTRON Fhos
2L	11507982	2L_11507982_SNP [dm3] 2L_11507982_SNP [dm6]	A	C	1.363e^-4	0.727	UTR_3_PRIME spz4 DOWNSTREAM CG6509	TF binding site mE1_TFBS_cad
2R	9788597	2R_9788597_SNP [dm3] 2R_13901092_SNP [dm6]	T	G	1.368e^-4	0.727	INTRON shot
2R	14373337	2R_14373337_SNP [dm3] 2R_18485832_SNP [dm6]	G	T	1.372e^-4	0.727	INTRON CG30116
3L	4736999	3L_4736999_SNP [dm3] 3L_4736999_SNP [dm6]	G	A	1.380e^-4	0.727	INTRON RhoGEF64C
2L	11500335	2L_11500335_SNP [dm3] 2L_11500335_SNP [dm6]	G	C	1.381e^-4	0.727	INTERGENIC
2R	4211611	2R_4211611_SNP [dm3] 2R_8324106_SNP [dm6]	G	A	1.382e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17592863	2R_17592863_SNP [dm3] 2R_21705358_SNP [dm6]	C	G	1.386e^-4	0.727	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5801242	3L_5801242_SNP [dm3] 3L_5808142_SNP [dm6]	C	G	1.392e^-4	0.727	INTRON S6k	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	14333314	2R_14333314_SNP [dm3] 2R_18445809_SNP [dm6]	G	T	1.394e^-4	0.727	UPSTREAM CG5189 & 1 other DOWNSTREAM slim INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	3901531	2R_3901531_SNP [dm3] 2R_8014026_SNP [dm6]	T	A	1.400e^-4	0.727	UPSTREAM CG14762 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	7857527	3L_7857527_SNP [dm3] 3L_7864427_SNP [dm6]	T	C	1.404e^-4	0.727	INTRON Pdp1
X	15312326	X_15312326_SNP [dm3] X_15418293_SNP [dm6]	A	C	1.419e^-4	0.727	INTRON Cngl
3R	11889864	3R_11889864_SNP [dm3] 3R_16064142_SNP [dm6]	A	G	1.419e^-4	0.727	SYNONYMOUS_CODING CG10185	TF binding site mE1_TFBS_HSA
2L	8586860	2L_8586860_SNP [dm3] 2L_8586860_SNP [dm6]	G	T	1.426e^-4	0.727	INTRON Sema-1a
2R	17153562	2R_17153562_SNP [dm3] 2R_21266057_SNP [dm6]	C	T	1.430e^-4	0.727	SYNONYMOUS_CODING CG30391 DOWNSTREAM CG30393 INTRON Rgk3
3L	817243	3L_817243_SNP [dm3] 3L_817243_SNP [dm6]	C	A	1.435e^-4	0.727	INTERGENIC
2L	13711279	2L_13711279_SNP [dm3] 2L_13711279_SNP [dm6]	A	G	1.436e^-4	0.727	DOWNSTREAM CG7311 INTRON CG31814
2L	12922704	2L_12922704_SNP [dm3] 2L_12922704_SNP [dm6]	T	C	1.441e^-4	0.727	SYNONYMOUS_CODING ACXA INTRON ACXA
2L	13442275	2L_13442275_SNP [dm3] 2L_13442275_SNP [dm6]	C	T	1.445e^-4	0.727	INTRON CG42784 EXON CR45683
2L	7924582	2L_7924582_SNP [dm3] 2L_7924582_SNP [dm6]	T	A	1.451e^-4	0.727	INTRON Snoo
X	14602108	X_14602108_SNP [dm3] X_14708075_SNP [dm6]	C	G	1.452e^-4	0.727	INTRON NetB
2L	13711322	2L_13711322_DEL [dm3] 2L_13711322_DEL [dm6]	GC	A	1.454e^-4	0.727	DOWNSTREAM CG7311 INTRON CG31814
X	8163295	X_8163295_SNP [dm3] X_8269262_SNP [dm6]	T	C	1.456e^-4	0.727	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
3R	10510171	3R_10510171_SNP [dm3] 3R_14684449_SNP [dm6]	G	A	1.462e^-4	0.727	INTRON Meltrin
2L	6275036	2L_6275036_SNP [dm3] 2L_6275036_SNP [dm6]	A	T	1.463e^-4	0.727	INTRON Ddr
3L	817288	3L_817288_SNP [dm3] 3L_817288_SNP [dm6]	A	G	1.466e^-4	0.727	INTERGENIC
3R	24988844	3R_24988844_SNP [dm3] 3R_29163122_SNP [dm6]	G	A	1.467e^-4	0.727	INTRON CG11897
3R	24988849	3R_24988849_SNP [dm3] 3R_29163127_SNP [dm6]	G	T	1.467e^-4	0.727	INTRON CG11897
2R	4524792	2R_4524792_SNP [dm3] 2R_8637287_SNP [dm6]	A	C	1.473e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10146352	3R_10146352_SNP [dm3] 3R_14320630_SNP [dm6]	T	A	1.476e^-4	0.727	UTR_3_PRIME Afti DOWNSTREAM pr-set7 & 1 other
2L	9734145	2L_9734145_SNP [dm3] 2L_9734145_SNP [dm6]	A	T	1.477e^-4	0.727	INTRON Nckx30C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19991051	X_19991051_SNP [dm3] X_20097018_SNP [dm6]	T	G	1.479e^-4	0.727	UPSTREAM CG42581 INTERGENIC
2L	8586914	2L_8586914_SNP [dm3] 2L_8586914_SNP [dm6]	T	A	1.487e^-4	0.727	INTRON Sema-1a
2L	6274991	2L_6274991_SNP [dm3] 2L_6274991_SNP [dm6]	A	C	1.494e^-4	0.727	INTRON Ddr
2R	3913393	2R_3913393_SNP [dm3] 2R_8025888_SNP [dm6]	A	T	1.497e^-4	0.727	EXON CR45267
2L	19387481	2L_19387481_SNP [dm3] 2L_19387481_SNP [dm6]	A	T	1.505e^-4	0.727	INTRON CG17549
3L	13968327	3L_13968327_INS [dm3] 3L_13975227_INS [dm6]	G	GTGCAAGTTGTTATGAATTG...	1.507e^-4	0.727	INTRON Hsc70-1
2L	14776048	2L_14776048_SNP [dm3] 2L_14776048_SNP [dm6]	A	C	1.523e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_Kr
X	15312301	X_15312301_SNP [dm3] X_15418268_SNP [dm6]	G	T	1.527e^-4	0.727	INTRON Cngl
2L	16237106	2L_16237106_SNP [dm3] 2L_16237106_SNP [dm6]	A	C	1.531e^-4	0.727	INTRON CG42817
3L	4969124	3L_4969124_MNP [dm3] 3L_4969124_MNP [dm6]	CAA	GCT	1.534e^-4	0.727	INTRON Con	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25163607	3R_25163607_SNP [dm3] 3R_29337885_SNP [dm6]	T	A	1.536e^-4	0.727	INTERGENIC
3R	16099851	3R_16099851_SNP [dm3] 3R_20274129_SNP [dm6]	G	A	1.536e^-4	0.727	INTRON cic
2L	14811325	2L_14811325_SNP [dm3] 2L_14811325_SNP [dm6]	A	G	1.538e^-4	0.727	SYNONYMOUS_CODING CG33309
3L	5491332	3L_5491332_SNP [dm3] 3L_5498232_SNP [dm6]	C	T	1.540e^-4	0.727	NON_SYNONYMOUS_CODING blanks	TF binding site mE1_TFBS_cnc
3R	11998530	3R_11998530_SNP [dm3] 3R_16172808_SNP [dm6]	T	C	1.545e^-4	0.727	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11998533	3R_11998533_SNP [dm3] 3R_16172811_SNP [dm6]	A	G	1.545e^-4	0.727	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5713614	3L_5713614_SNP [dm3] 3L_5720514_SNP [dm6]	C	T	1.548e^-4	0.727	DOWNSTREAM snoRNA:Me18S-A1494 INTRON sif
2R	5417044	2R_5417044_SNP [dm3] 2R_9529539_SNP [dm6]	G	C	1.555e^-4	0.727	INTRON brp
2R	16453738	2R_16453738_SNP [dm3] 2R_20566233_SNP [dm6]	G	A	1.559e^-4	0.727	INTRON qsm
3R	10375137	3R_10375137_SNP [dm3] 3R_14549415_SNP [dm6]	T	A	1.560e^-4	0.727	INTRON Pde6
2R	13504155	2R_13504155_SNP [dm3] 2R_17616650_SNP [dm6]	C	T	1.566e^-4	0.727	UTR_3_PRIME CG44403 UPSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10963512	3R_10963512_SNP [dm3] 3R_15137790_SNP [dm6]	C	G	1.567e^-4	0.727	NON_SYNONYMOUS_CODING CG3984 UPSTREAM CG6912 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20700121	2R_20700121_SNP [dm3] 2R_24812598_SNP [dm6]	C	A	1.569e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11865029	2L_11865029_SNP [dm3] 2L_11865029_SNP [dm6]	C	T	1.569e^-4	0.727	INTRON Pde1c
2L	7925819	2L_7925819_SNP [dm3] 2L_7925819_SNP [dm6]	T	C	1.570e^-4	0.727	INTRON Snoo
3L	7856987	3L_7856987_SNP [dm3] 3L_7863887_SNP [dm6]	C	A	1.574e^-4	0.727	INTRON Pdp1	TF binding site mE1_TFBS_Trl
2R	17457637	2R_17457637_SNP [dm3] 2R_21570132_SNP [dm6]	T	A	1.577e^-4	0.727	INTRON CG10440
X	16770013	X_16770013_SNP [dm3] X_16875980_SNP [dm6]	A	C	1.577e^-4	0.727	INTRON CG13003
2L	10563297	2L_10563297_SNP [dm3] 2L_10563297_SNP [dm6]	T	C	1.589e^-4	0.727	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16945021	2R_16945021_SNP [dm3] 2R_21057516_SNP [dm6]	A	C	1.592e^-4	0.727	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12685787	2R_12685787_SNP [dm3] 2R_16798282_SNP [dm6]	C	G	1.596e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13940677	3R_13940677_SNP [dm3] 3R_18114955_SNP [dm6]	G	A	1.597e^-4	0.727	INTRON sr
2R	14644488	2R_14644488_SNP [dm3] 2R_18756983_SNP [dm6]	A	G	1.598e^-4	0.727	SYNONYMOUS_CODING Cyp12b2 DOWNSTREAM Jabba
2L	11442474	2L_11442474_SNP [dm3] 2L_11442474_SNP [dm6]	C	A	1.600e^-4	0.727	INTRON salm
2L	13320676	2L_13320676_SNP [dm3] 2L_13320676_SNP [dm6]	G	C	1.614e^-4	0.727	INTRON CG43778
2R	14135205	2R_14135205_SNP [dm3] 2R_18247700_SNP [dm6]	C	T	1.615e^-4	0.727	UPSTREAM CR44420 INTERGENIC
2R	14655211	2R_14655211_SNP [dm3] 2R_18767706_SNP [dm6]	A	G	1.616e^-4	0.727	INTRON Mctp
X	8916029	X_8916029_SNP [dm3] X_9021996_SNP [dm6]	C	T	1.619e^-4	0.727	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	18174384	X_18174384_SNP [dm3] X_18280351_SNP [dm6]	C	T	1.625e^-4	0.727	INTRON upd3
X	18177404	X_18177404_DEL [dm3] X_18283371_DEL [dm6]	CCAATC	C	1.627e^-4	0.727	INTRON upd3
X	15313021	X_15313021_SNP [dm3] X_15418988_SNP [dm6]	A	T	1.627e^-4	0.727	INTRON Cngl
3L	9027501	3L_9027501_SNP [dm3] 3L_9034401_SNP [dm6]	A	T	1.628e^-4	0.727	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2R	20221527	2R_20221527_SNP [dm3] 2R_24334004_SNP [dm6]	A	T	1.632e^-4	0.727	UTR_5_PRIME slbo DOWNSTREAM CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12084233	3R_12084233_SNP [dm3] 3R_16258511_SNP [dm6]	C	T	1.639e^-4	0.727	SYNONYMOUS_CODING tara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23335837	3R_23335837_SNP [dm3] 3R_27510115_SNP [dm6]	G	A	1.641e^-4	0.727	INTERGENIC
X	15313044	X_15313044_SNP [dm3] X_15419011_SNP [dm6]	G	A	1.641e^-4	0.727	INTRON Cngl
3R	21000596	3R_21000596_SNP [dm3] 3R_25174874_SNP [dm6]	C	T	1.644e^-4	0.727	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	17564107	3L_17564107_DEL [dm3] 3L_17571007_DEL [dm6]	TT	T	1.645e^-4	0.727	INTRON Eip74EF	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	17619293	X_17619293_SNP [dm3] X_17725260_SNP [dm6]	T	A	1.647e^-4	0.727	INTRON CG42684
3R	13911343	3R_13911343_SNP [dm3] 3R_18085621_SNP [dm6]	G	C	1.647e^-4	0.727	INTERGENIC
2L	13840355	2L_13840355_SNP [dm3] 2L_13840355_SNP [dm6]	G	A	1.648e^-4	0.727	UTR_3_PRIME CG33307 DOWNSTREAM CG33307 INTRON CenG1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19535495	3R_19535495_SNP [dm3] 3R_23709773_SNP [dm6]	A	G	1.651e^-4	0.727	UPSTREAM CG10301 INTERGENIC
3R	13429275	3R_13429275_SNP [dm3] 3R_17603553_SNP [dm6]	T	A	1.652e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5563164	2L_5563164_INS [dm3] 2L_5563164_INS [dm6]	A	AA	1.655e^-4	0.727	SPLICE_SITE_REGION GluRIIB INTRON GluRIIB	TF binding site mE1_TFBS_cad
2R	13498044	2R_13498044_SNP [dm3] 2R_17610539_SNP [dm6]	C	T	1.658e^-4	0.727	INTRON CG10936
2L	5564851	2L_5564851_SNP [dm3] 2L_5564851_SNP [dm6]	T	C	1.661e^-4	0.727	UPSTREAM snRNA:U4:25F EXON CR44794	TF binding site mE1_TFBS_cad
3R	10381871	3R_10381871_SNP [dm3] 3R_14556149_SNP [dm6]	G	C	1.662e^-4	0.727	UPSTREAM Pde6 INTRON Pde6
X	3931273	X_3931273_SNP [dm3] X_4037240_SNP [dm6]	G	C	1.666e^-4	0.727	INTERGENIC
2R	13714852	2R_13714852_SNP [dm3] 2R_17827347_SNP [dm6]	A	G	1.670e^-4	0.727	INTRON grh	transposable element FlyBase
2L	15649431	2L_15649431_SNP [dm3] 2L_15649431_SNP [dm6]	G	T	1.672e^-4	0.727	SYNONYMOUS_CODING CG4587
X	6614099	X_6614099_SNP [dm3] X_6720066_SNP [dm6]	T	A	1.677e^-4	0.727	UTR_3_PRIME CG3168 DOWNSTREAM CG14441 & 1 other
2L	9667704	2L_9667704_SNP [dm3] 2L_9667704_SNP [dm6]	A	G	1.677e^-4	0.727	INTERGENIC
3R	10913021	3R_10913021_SNP [dm3] 3R_15087299_SNP [dm6]	T	C	1.683e^-4	0.727	INTRON CG6966
2L	16455789	2L_16455789_SNP [dm3] 2L_16455789_SNP [dm6]	G	A	1.686e^-4	0.727	DOWNSTREAM Idgf3 INTERGENIC	regulatory region REDfly_CRMs
3L	9485228	3L_9485228_INS [dm3] 3L_9492128_INS [dm6]	T	TGT	1.687e^-4	0.727	UTR_5_PRIME CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9427910	3L_9427910_SNP [dm3] 3L_9434810_SNP [dm6]	T	G	1.697e^-4	0.727	SYNONYMOUS_CODING CG42526 UPSTREAM MTF-1 INTRON MTF-1
3L	4539943	3L_4539943_SNP [dm3] 3L_4539943_SNP [dm6]	G	C	1.698e^-4	0.727	NON_SYNONYMOUS_CODING CG32243 DOWNSTREAM CG11353
3R	18602326	3R_18602326_SNP [dm3] 3R_22776604_SNP [dm6]	C	A	1.705e^-4	0.727	DOWNSTREAM Usp12-46 & 1 other INTRON CG7029	TF binding site mE1_TFBS_cad
X	21144617	X_21144617_SNP [dm3] X_21273590_SNP [dm6]	A	T	1.708e^-4	0.727	INTRON CG32521
2L	7131761	2L_7131761_SNP [dm3] 2L_7131761_SNP [dm6]	G	T	1.716e^-4	0.727	INTRON Pvf3
2L	7924500	2L_7924500_SNP [dm3] 2L_7924500_SNP [dm6]	G	A	1.720e^-4	0.727	INTRON Snoo
2L	11499464	2L_11499464_SNP [dm3] 2L_11499464_SNP [dm6]	G	A	1.721e^-4	0.727	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15653321	3L_15653321_SNP [dm3] 3L_15660221_SNP [dm6]	C	A	1.727e^-4	0.727	UTR_3_PRIME Eig71Ei UPSTREAM Eig71Eh DOWNSTREAM Eig71Ej & 1 other
3L	6334988	3L_6334988_SNP [dm3] 3L_6341888_SNP [dm6]	C	T	1.728e^-4	0.727	INTRON CG13300	TF binding site mE1_TFBS_sens
2R	13487328	2R_13487328_SNP [dm3] 2R_17599823_SNP [dm6]	C	G	1.730e^-4	0.727	UPSTREAM CG43920 & 1 other INTRON lack
3R	14866400	3R_14866400_SNP [dm3] 3R_19040678_SNP [dm6]	G	A	1.735e^-4	0.727	SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad
2L	7272401	2L_7272401_SNP [dm3] 2L_7272401_SNP [dm6]	T	C	1.742e^-4	0.727	INTRON Wnt4	TF binding site mE1_TFBS_HSA
2R	17207118	2R_17207118_SNP [dm3] 2R_21319613_SNP [dm6]	C	G	1.750e^-4	0.727	NON_SYNONYMOUS_CODING CG33655 UTR_3_PRIME CG33655 DOWNSTREAM CG30394 & 1 other
3L	11378331	3L_11378331_SNP [dm3] 3L_11385231_SNP [dm6]	T	G	1.752e^-4	0.727	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3R	13429286	3R_13429286_SNP [dm3] 3R_17603564_SNP [dm6]	A	T	1.752e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11884765	3R_11884765_SNP [dm3] 3R_16059043_SNP [dm6]	C	T	1.753e^-4	0.727	SYNONYMOUS_CODING msps
3R	9828145	3R_9828145_SNP [dm3] 3R_14002423_SNP [dm6]	C	G	1.758e^-4	0.727	INTRON rdx
X	16781586	X_16781586_SNP [dm3] X_16887553_SNP [dm6]	A	G	1.758e^-4	0.727	UPSTREAM CG9099 DOWNSTREAM Rcp INTRON CG4880	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	15587228	X_15587228_SNP [dm3] X_15693195_SNP [dm6]	G	C	1.760e^-4	0.727	UPSTREAM CR45526 DOWNSTREAM CR45523 EXON CR45524	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
3R	15195515	3R_15195515_SNP [dm3] 3R_19369793_SNP [dm6]	C	T	1.767e^-4	0.727	INTRON Ino80
3R	12844513	3R_12844513_SNP [dm3] 3R_17018791_SNP [dm6]	T	C	1.772e^-4	0.727	UTR_3_PRIME AdSL INTRON Pxd
2L	8658028	2L_8658028_SNP [dm3] 2L_8658028_SNP [dm6]	A	G	1.777e^-4	0.727	INTRON Sema-1a
3L	7851703	3L_7851703_SNP [dm3] 3L_7858603_SNP [dm6]	C	G	1.777e^-4	0.727	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	364270	3L_364270_SNP [dm3] 3L_364270_SNP [dm6]	C	T	1.778e^-4	0.727	SYNONYMOUS_CODING CG1233	TF binding site mE1_TFBS_sens
3L	1420825	3L_1420825_SNP [dm3] 3L_1420825_SNP [dm6]	G	T	1.782e^-4	0.727	DOWNSTREAM CG9173 INTRON Ptp61F
3R	13441517	3R_13441517_SNP [dm3] 3R_17615795_SNP [dm6]	C	A	1.785e^-4	0.727	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	381280	3L_381280_SNP [dm3] 3L_381280_SNP [dm6]	C	T	1.803e^-4	0.727	INTRON trh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5291551	3L_5291551_SNP [dm3] 3L_5298451_SNP [dm6]	A	T	1.811e^-4	0.727	INTERGENIC
X	18409101	X_18409101_SNP [dm3] X_18515068_SNP [dm6]	G	T	1.812e^-4	0.727	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	14904279	3R_14904279_SNP [dm3] 3R_19078557_SNP [dm6]	T	C	1.813e^-4	0.727	INTRON cdi
3L	16494330	3L_16494330_SNP [dm3] 3L_16501230_SNP [dm6]	G	T	1.816e^-4	0.727	DOWNSTREAM st & 1 other INTRON CG43373
2L	11497980	2L_11497980_SNP [dm3] 2L_11497980_SNP [dm6]	G	C	1.818e^-4	0.727	INTRON CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	11179640	X_11179640_SNP [dm3] X_11285607_SNP [dm6]	A	G	1.820e^-4	0.727	INTRON CG44422
2L	13710129	2L_13710129_SNP [dm3] 2L_13710129_SNP [dm6]	G	A	1.820e^-4	0.727	NON_SYNONYMOUS_CODING CG7311 UTR_3_PRIME CG7311 INTRON CG31814	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15822523	3R_15822523_INS [dm3] 3R_19996801_INS [dm6]	A	TG	1.823e^-4	0.727	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	22447994	3R_22447994_SNP [dm3] 3R_26622272_SNP [dm6]	G	T	1.832e^-4	0.727	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
3R	11408569	3R_11408569_SNP [dm3] 3R_15582847_SNP [dm6]	C	T	1.833e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9920076	2R_9920076_SNP [dm3] 2R_14032571_SNP [dm6]	T	A	1.833e^-4	0.727	INTRON mam
2L	11499597	2L_11499597_SNP [dm3] 2L_11499597_SNP [dm6]	C	G	1.836e^-4	0.727	UPSTREAM CG6488 INTERGENIC
3L	17265955	3L_17265955_SNP [dm3] 3L_17272855_SNP [dm6]	C	T	1.837e^-4	0.727	INTERGENIC
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	1.846e^-4	0.727	INTRON salm
2R	14222094	2R_14222094_SNP [dm3] 2R_18334589_SNP [dm6]	T	G	1.850e^-4	0.727	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19427081	2L_19427081_SNP [dm3] 2L_19427081_SNP [dm6]	A	G	1.851e^-4	0.727	UPSTREAM CG16771 & 1 other INTRON CG16771 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10702333	3L_10702333_SNP [dm3] 3L_10709233_SNP [dm6]	A	T	1.852e^-4	0.727	INTERGENIC
3R	12730761	3R_12730761_SNP [dm3] 3R_16905039_SNP [dm6]	C	T	1.852e^-4	0.727	INTRON iab-8
2L	14811378	2L_14811378_SNP [dm3] 2L_14811378_SNP [dm6]	A	G	1.856e^-4	0.727	NON_SYNONYMOUS_CODING CG33309
X	4804438	X_4804438_DEL [dm3] X_4910405_DEL [dm6]	TTT	T	1.856e^-4	0.727	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2725129	3L_2725129_SNP [dm3] 3L_2725129_SNP [dm6]	G	A	1.865e^-4	0.727	INTRON Mrtf
2L	11785815	2L_11785815_SNP [dm3] 2L_11785815_SNP [dm6]	C	T	1.867e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17259944	2R_17259944_SNP [dm3] 2R_21372439_SNP [dm6]	C	A	1.868e^-4	0.727	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13133447	2L_13133447_SNP [dm3] 2L_13133447_SNP [dm6]	T	G	1.874e^-4	0.727	NON_SYNONYMOUS_CODING CG5122
2R	12332605	2R_12332605_SNP [dm3] 2R_16445100_SNP [dm6]	A	G	1.878e^-4	0.727	UPSTREAM CG15925 DOWNSTREAM CG4409 INTERGENIC
3L	17139144	3L_17139144_SNP [dm3] 3L_17146044_SNP [dm6]	T	A	1.880e^-4	0.727	INTRON Rbp6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26615235	3R_26615235_SNP [dm3] 3R_30789513_SNP [dm6]	G	A	1.882e^-4	0.727	DOWNSTREAM wts & 1 other INTERGENIC
2R	9442570	2R_9442570_SNP [dm3] 2R_13555065_SNP [dm6]	C	T	1.885e^-4	0.727	SYNONYMOUS_CODING Roe1 UPSTREAM link	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9263505	3L_9263505_SNP [dm3] 3L_9270405_SNP [dm6]	T	C	1.893e^-4	0.727	SYNONYMOUS_CODING GluRIB
2R	14216584	2R_14216584_SNP [dm3] 2R_18329079_SNP [dm6]	G	A	1.898e^-4	0.727	INTRON sbb
3R	12844012	3R_12844012_SNP [dm3] 3R_17018290_SNP [dm6]	A	T	1.900e^-4	0.727	DOWNSTREAM AdSL INTRON Pxd
3R	13441298	3R_13441298_SNP [dm3] 3R_17615576_SNP [dm6]	T	C	1.903e^-4	0.727	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	15095258	3R_15095258_SNP [dm3] 3R_19269536_SNP [dm6]	A	C	1.907e^-4	0.727	INTERGENIC
2L	19405895	2L_19405895_SNP [dm3] 2L_19405895_SNP [dm6]	C	T	1.909e^-4	0.727	INTRON Pax	TF binding site mE1_TFBS_Kr
3L	17130617	3L_17130617_SNP [dm3] 3L_17137517_SNP [dm6]	T	C	1.910e^-4	0.727	INTRON Rbp6
3R	27168395	3R_27168395_SNP [dm3] 3R_31342673_SNP [dm6]	A	G	1.916e^-4	0.727	INTRON CG34347
2R	12700736	2R_12700736_SNP [dm3] 2R_16813231_SNP [dm6]	G	T	1.926e^-4	0.727	DOWNSTREAM CR44379 INTERGENIC
X	15313017	X_15313017_SNP [dm3] X_15418984_SNP [dm6]	T	G	1.928e^-4	0.727	INTRON Cngl
2L	14776047	2L_14776047_SNP [dm3] 2L_14776047_SNP [dm6]	T	C	1.929e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	6804984	3L_6804984_SNP [dm3] 3L_6811884_SNP [dm6]	T	A	1.932e^-4	0.727	INTERGENIC
3L	19807438	3L_19807438_SNP [dm3] 3L_19814338_SNP [dm6]	C	T	1.937e^-4	0.727	NON_SYNONYMOUS_CODING cyc UPSTREAM Cyp305a1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3398014	2L_3398014_SNP [dm3] 2L_3398014_SNP [dm6]	T	C	1.937e^-4	0.727	UPSTREAM CG34175 & 1 other INTERGENIC
2L	3778956	2L_3778956_SNP [dm3] 2L_3778956_SNP [dm6]	G	T	1.941e^-4	0.727	UTR_5_PRIME bowl INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	412129	3L_412129_SNP [dm3] 3L_412129_SNP [dm6]	A	G	1.943e^-4	0.727	INTERGENIC
3R	23011234	3R_23011234_SNP [dm3] 3R_27185512_SNP [dm6]	A	G	1.948e^-4	0.727	INTRON Ser	TF binding site mE1_TFBS_HSA
2R	3730733	2R_3730733_SNP [dm3] 2R_7843228_SNP [dm6]	C	A	1.950e^-4	0.727	NON_SYNONYMOUS_CODING Dgk	TF binding site mE1_TFBS_chinmo
3L	10706313	3L_10706313_SNP [dm3] 3L_10713213_SNP [dm6]	T	C	1.963e^-4	0.727	INTERGENIC
3R	19020654	3R_19020654_DEL [dm3] 3R_23194932_DEL [dm6]	AAG	T	1.964e^-4	0.727	INTRON cnc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	10670084	2L_10670084_DEL [dm3] 2L_10670084_DEL [dm6]	TTGGGATG	T	1.966e^-4	0.727	INTRON CG31871
3L	4969103	3L_4969103_SNP [dm3] 3L_4969103_SNP [dm6]	A	G	1.975e^-4	0.727	INTRON Con	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11499514	2L_11499514_SNP [dm3] 2L_11499514_SNP [dm6]	C	A	1.977e^-4	0.727	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2349814	3L_2349814_SNP [dm3] 3L_2349814_SNP [dm6]	G	A	1.978e^-4	0.727	INTERGENIC
2L	7131765	2L_7131765_SNP [dm3] 2L_7131765_SNP [dm6]	G	A	1.981e^-4	0.727	INTRON Pvf3
X	5096377	X_5096377_SNP [dm3] X_5202344_SNP [dm6]	T	G	1.983e^-4	0.727	INTRON rg & 1 other
2R	14918165	2R_14918165_SNP [dm3] 2R_19030660_SNP [dm6]	C	A	1.995e^-4	0.727	DOWNSTREAM CG43351 INTRON 5-HT1B
3L	9948708	3L_9948708_SNP [dm3] 3L_9955608_SNP [dm6]	A	G	1.997e^-4	0.727	SYNONYMOUS_CODING CG34356
3R	14840280	3R_14840280_SNP [dm3] 3R_19014558_SNP [dm6]	G	A	1.998e^-4	0.727	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	12149556	X_12149556_SNP [dm3] X_12255523_SNP [dm6]	G	A	1.999e^-4	0.727	INTRON Ten-a	TF binding site mE1_TFBS_sens
X	17320121	X_17320121_SNP [dm3] X_17426088_SNP [dm6]	C	A	2.004e^-4	0.727	SPLICE_SITE_REGION CG5613 SYNONYMOUS_CODING CG5613 INTRON CG12994 & 1 other
3L	7850887	3L_7850887_SNP [dm3] 3L_7857787_SNP [dm6]	A	T	2.006e^-4	0.727	INTRON Pdp1
3R	12099823	3R_12099823_SNP [dm3] 3R_16274101_SNP [dm6]	T	C	2.016e^-4	0.727	INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10563300	2L_10563300_SNP [dm3] 2L_10563300_SNP [dm6]	A	C	2.023e^-4	0.727	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3510907	3L_3510907_SNP [dm3] 3L_3510907_SNP [dm6]	A	T	2.029e^-4	0.727	DOWNSTREAM ImpE2 & 1 other INTERGENIC
2L	6074208	2L_6074208_SNP [dm3] 2L_6074208_SNP [dm6]	C	A	2.039e^-4	0.727	DOWNSTREAM CR43801 & 1 other INTERGENIC
X	15313045	X_15313045_SNP [dm3] X_15419012_SNP [dm6]	C	T	2.051e^-4	0.727	INTRON Cngl
3L	2731055	3L_2731055_SNP [dm3] 3L_2731055_SNP [dm6]	C	G	2.052e^-4	0.727	INTRON Mrtf
2R	15295455	2R_15295455_SNP [dm3] 2R_19407950_SNP [dm6]	T	A	2.052e^-4	0.727	DOWNSTREAM hts INTRON hts
3R	3819520	3R_3819520_SNP [dm3] 3R_7993798_SNP [dm6]	A	T	2.056e^-4	0.727	INTRON CG2781
3R	25204082	3R_25204082_SNP [dm3] 3R_29378360_SNP [dm6]	A	C	2.068e^-4	0.727	INTRON Ptp99A	TF binding site mE1_TFBS_HSA
3L	2536244	3L_2536244_SNP [dm3] 3L_2536244_SNP [dm6]	A	G	2.068e^-4	0.727	INTRON Spn	TF binding site mE1_TFBS_chinmo
3R	13946529	3R_13946529_SNP [dm3] 3R_18120807_SNP [dm6]	A	T	2.072e^-4	0.727	INTRON sr	TF binding site BDTNP1_TFBS_dl
2R	18212484	2R_18212484_SNP [dm3] 2R_22324979_SNP [dm6]	G	A	2.072e^-4	0.727	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
2L	9453712	2L_9453712_SNP [dm3] 2L_9453712_SNP [dm6]	C	A	2.080e^-4	0.727	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13437789	3R_13437789_SNP [dm3] 3R_17612067_SNP [dm6]	A	G	2.084e^-4	0.727	UPSTREAM Edg91 & 1 other INTERGENIC
3L	14577489	3L_14577489_SNP [dm3] 3L_14584389_SNP [dm6]	A	G	2.084e^-4	0.727	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	6292448	3L_6292448_SNP [dm3] 3L_6299348_SNP [dm6]	T	G	2.086e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15133769	2R_15133769_SNP [dm3] 2R_19246264_SNP [dm6]	A	G	2.093e^-4	0.727	INTERGENIC
3R	23517284	3R_23517284_SNP [dm3] 3R_27691562_SNP [dm6]	C	G	2.095e^-4	0.727	INTRON CG12880	TF binding site mE1_TFBS_chinmo
X	3990305	X_3990305_SNP [dm3] X_4096272_SNP [dm6]	A	G	2.107e^-4	0.727	INTERGENIC
2R	6448466	2R_6448466_SNP [dm3] 2R_10560961_SNP [dm6]	G	T	2.107e^-4	0.727	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16137930	X_16137930_SNP [dm3] X_16243897_SNP [dm6]	G	A	2.110e^-4	0.727	INTERGENIC
3R	12514486	3R_12514486_SNP [dm3] 3R_16688764_SNP [dm6]	A	G	2.116e^-4	0.727	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	11711832	2L_11711832_SNP [dm3] 2L_11711832_SNP [dm6]	A	T	2.118e^-4	0.727	INTERGENIC
2L	19405918	2L_19405918_DEL [dm3] 2L_19405918_DEL [dm6]	CC	C	2.118e^-4	0.727	INTRON Pax	TF binding site mE1_TFBS_Kr
X	18173728	X_18173728_SNP [dm3] X_18279695_SNP [dm6]	C	T	2.127e^-4	0.727	NON_SYNONYMOUS_CODING upd3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11998644	3R_11998644_SNP [dm3] 3R_16172922_SNP [dm6]	G	A	2.140e^-4	0.727	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15411475	3R_15411475_SNP [dm3] 3R_19585753_SNP [dm6]	C	T	2.146e^-4	0.727	SYNONYMOUS_CODING Dys UPSTREAM snoRNA:Me18S-A1374 INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15133713	2R_15133713_SNP [dm3] 2R_19246208_SNP [dm6]	G	T	2.150e^-4	0.727	INTERGENIC
2L	15758854	2L_15758854_SNP [dm3] 2L_15758854_SNP [dm6]	G	A	2.151e^-4	0.727	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10833901	2L_10833901_SNP [dm3] 2L_10833901_SNP [dm6]	T	A	2.155e^-4	0.727	INTRON Nos
3L	13546126	3L_13546126_SNP [dm3] 3L_13553026_SNP [dm6]	T	C	2.155e^-4	0.727	INTRON bru-3
2L	8628550	2L_8628550_SNP [dm3] 2L_8628550_SNP [dm6]	C	T	2.159e^-4	0.727	INTRON Sema-1a
3L	8031537	3L_8031537_SNP [dm3] 3L_8038437_SNP [dm6]	A	G	2.165e^-4	0.727	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	20235102	3R_20235102_SNP [dm3] 3R_24409380_SNP [dm6]	G	T	2.166e^-4	0.727	INTRON nAChRalpha1
3L	3691570	3L_3691570_SNP [dm3] 3L_3691570_SNP [dm6]	C	T	2.168e^-4	0.727	INTERGENIC
3R	14209468	3R_14209468_SNP [dm3] 3R_18383746_SNP [dm6]	T	C	2.177e^-4	0.727	SYNONYMOUS_CODING CG14309	TF binding site mE1_TFBS_cad
3R	11922079	3R_11922079_SNP [dm3] 3R_16096357_SNP [dm6]	A	G	2.189e^-4	0.727	SYNONYMOUS_CODING Mhcl
3L	7688014	3L_7688014_SNP [dm3] 3L_7694914_SNP [dm6]	G	A	2.194e^-4	0.727	INTRON CG32373 & 2 others
3R	23581799	3R_23581799_SNP [dm3] 3R_27756077_SNP [dm6]	G	A	2.196e^-4	0.727	INTERGENIC
3L	16991483	3L_16991483_SNP [dm3] 3L_16998383_SNP [dm6]	A	G	2.201e^-4	0.727	SYNONYMOUS_CODING CG3764 DOWNSTREAM mir-2500	TF binding site mE1_TFBS_chinmo
3L	11378348	3L_11378348_INS [dm3] 3L_11385248_INS [dm6]	A	AA	2.210e^-4	0.727	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
2L	16694461	2L_16694461_SNP [dm3] 2L_16694461_SNP [dm6]	C	A	2.212e^-4	0.727	INTRON grp
3L	8564359	3L_8564359_SNP [dm3] 3L_8571259_SNP [dm6]	T	C	2.215e^-4	0.727	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea UPSTREAM mir-190 DOWNSTREAM rhea	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10079917	X_10079917_DEL [dm3] X_10185884_DEL [dm6]	CACAC	C	2.227e^-4	0.727	INTRON CG43902 & 1 other
3R	12845385	3R_12845385_SNP [dm3] 3R_17019663_SNP [dm6]	A	G	2.232e^-4	0.727	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	2.232e^-4	0.727	INTRON salm
2L	5766910	2L_5766910_SNP [dm3] 2L_5766910_SNP [dm6]	G	T	2.237e^-4	0.727	UPSTREAM obst-E DOWNSTREAM CG9171 INTERGENIC
2R	13416716	2R_13416716_SNP [dm3] 2R_17529211_SNP [dm6]	C	G	2.238e^-4	0.727	INTRON Patronin
3R	15221168	3R_15221168_SNP [dm3] 3R_19395446_SNP [dm6]	A	T	2.244e^-4	0.727	DOWNSTREAM CG3739 INTRON Ino80
3L	10708710	3L_10708710_SNP [dm3] 3L_10715610_SNP [dm6]	C	A	2.258e^-4	0.727	INTERGENIC
3R	13429440	3R_13429440_SNP [dm3] 3R_17603718_SNP [dm6]	T	A	2.267e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15411749	3R_15411749_SNP [dm3] 3R_19586027_SNP [dm6]	A	T	2.270e^-4	0.727	NON_SYNONYMOUS_CODING Dys UPSTREAM snoRNA:Me18S-A1374 INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8681000	X_8681000_SNP [dm3] X_8786967_SNP [dm6]	T	C	2.275e^-4	0.727	INTRON Lim1
3R	13898270	3R_13898270_SNP [dm3] 3R_18072548_SNP [dm6]	A	G	2.276e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16874510	3L_16874510_SNP [dm3] 3L_16881410_SNP [dm6]	T	A	2.280e^-4	0.727	INTRON Lmpt
3L	4136121	3L_4136121_SNP [dm3] 3L_4136121_SNP [dm6]	C	T	2.282e^-4	0.727	UPSTREAM RfC4 DOWNSTREAM Rop INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	18631999	2L_18631999_SNP [dm3] 2L_18631999_SNP [dm6]	G	T	2.284e^-4	0.727	INTRON MESR3
3R	5291008	3R_5291008_SNP [dm3] 3R_9465286_SNP [dm6]	C	T	2.290e^-4	0.727	UTR_3_PRIME CG16779
X	15312345	X_15312345_SNP [dm3] X_15418312_SNP [dm6]	T	C	2.294e^-4	0.727	INTRON Cngl
2L	13711283	2L_13711283_INS [dm3] 2L_13711283_INS [dm6]	T	TT	2.295e^-4	0.727	DOWNSTREAM CG7311 INTRON CG31814
2L	13711290	2L_13711290_SNP [dm3] 2L_13711290_SNP [dm6]	G	A	2.295e^-4	0.727	DOWNSTREAM CG7311 INTRON CG31814
2L	13711304	2L_13711304_DEL [dm3] 2L_13711304_DEL [dm6]	ATG	A	2.295e^-4	0.727	DOWNSTREAM CG7311 INTRON CG31814
3R	17469944	3R_17469944_SNP [dm3] 3R_21644222_SNP [dm6]	A	T	2.297e^-4	0.727	INTRON E2f	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14224005	2R_14224005_SNP [dm3] 2R_18336500_SNP [dm6]	G	T	2.299e^-4	0.727	INTRON sbb
3L	18205542	3L_18205542_SNP [dm3] 3L_18212442_SNP [dm6]	C	T	2.300e^-4	0.727	INTERGENIC
3L	6223801	3L_6223801_SNP [dm3] 3L_6230701_SNP [dm6]	C	T	2.304e^-4	0.727	INTERGENIC
2L	9745607	2L_9745607_SNP [dm3] 2L_9745607_SNP [dm6]	A	T	2.306e^-4	0.727	INTRON Nckx30C
3L	12236726	3L_12236726_SNP [dm3] 3L_12243626_SNP [dm6]	T	C	2.309e^-4	0.727	INTRON app
3R	18936756	3R_18936756_SNP [dm3] 3R_23111034_SNP [dm6]	T	C	2.310e^-4	0.727	INTRON CG13830
3R	13429282	3R_13429282_SNP [dm3] 3R_17603560_SNP [dm6]	T	A	2.310e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20518354	2R_20518354_SNP [dm3] 2R_24630831_SNP [dm6]	G	T	2.322e^-4	0.727	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3L	14582297	3L_14582297_SNP [dm3] 3L_14589197_SNP [dm6]	A	G	2.326e^-4	0.727	INTRON HGTX
3R	19771723	3R_19771723_SNP [dm3] 3R_23946001_SNP [dm6]	C	T	2.328e^-4	0.727	INTRON CG12268
X	15298316	X_15298316_SNP [dm3] X_15404283_SNP [dm6]	C	T	2.331e^-4	0.727	INTRON Cngl
2R	17876892	2R_17876892_SNP [dm3] 2R_21989387_SNP [dm6]	G	C	2.337e^-4	0.727	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad
3R	12846880	3R_12846880_SNP [dm3] 3R_17021158_SNP [dm6]	A	T	2.340e^-4	0.727	UPSTREAM AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11378359	3L_11378359_SNP [dm3] 3L_11385259_SNP [dm6]	A	G	2.341e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_inv
3R	12845700	3R_12845700_SNP [dm3] 3R_17019978_SNP [dm6]	G	A	2.344e^-4	0.727	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10384912	3R_10384912_SNP [dm3] 3R_14559190_SNP [dm6]	C	G	2.347e^-4	0.727	UTR_3_PRIME CG14854 UPSTREAM Pde6
3L	8667741	3L_8667741_SNP [dm3] 3L_8674641_SNP [dm6]	G	C	2.351e^-4	0.727	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	514262	2L_514262_SNP [dm3] 2L_514262_SNP [dm6]	C	T	2.352e^-4	0.727	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	17478406	2R_17478406_SNP [dm3] 2R_21590901_SNP [dm6]	G	A	2.357e^-4	0.727	NON_SYNONYMOUS_CODING CG33225
2R	14680148	2R_14680148_SNP [dm3] 2R_18792643_SNP [dm6]	C	T	2.362e^-4	0.727	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
2L	9701750	2L_9701750_SNP [dm3] 2L_9701750_SNP [dm6]	G	C	2.366e^-4	0.727	SYNONYMOUS_CODING pelo DOWNSTREAM CG31710	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14808803	3R_14808803_SNP [dm3] 3R_18983081_SNP [dm6]	T	A	2.366e^-4	0.727	UTR_3_PRIME snRNP-U1-C UPSTREAM gukh DOWNSTREAM dnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	12516871	3R_12516871_INS [dm3] 3R_16691149_INS [dm6]	A	AA	2.368e^-4	0.727	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10813319	2L_10813319_SNP [dm3] 2L_10813319_SNP [dm6]	C	T	2.368e^-4	0.727	SYNONYMOUS_CODING Nos	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10758110	2L_10758110_SNP [dm3] 2L_10758110_SNP [dm6]	C	T	2.369e^-4	0.727	INTERGENIC
3R	12845119	3R_12845119_SNP [dm3] 3R_17019397_SNP [dm6]	G	A	2.371e^-4	0.727	UTR_3_PRIME AdSL INTRON Pxd	TF binding site mE1_TFBS_cad
3R	17341634	3R_17341634_SNP [dm3] 3R_21515912_SNP [dm6]	A	G	2.372e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23010994	3R_23010994_SNP [dm3] 3R_27185272_SNP [dm6]	G	A	2.373e^-4	0.727	INTRON Ser	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15543955	2R_15543955_SNP [dm3] 2R_19656450_SNP [dm6]	G	A	2.379e^-4	0.727	EXON CR44214
3L	19536133	3L_19536133_SNP [dm3] 3L_19543033_SNP [dm6]	G	T	2.385e^-4	0.727	UTR_5_PRIME CG9279 UPSTREAM CG43885 & 1 other	TF binding site mE1_TFBS_cad
2R	14749690	2R_14749690_SNP [dm3] 2R_18862185_SNP [dm6]	C	T	2.386e^-4	0.727	UPSTREAM CG43069 & 1 other INTERGENIC
2L	7181312	2L_7181312_SNP [dm3] 2L_7181312_SNP [dm6]	A	T	2.394e^-4	0.727	UPSTREAM CG4495 INTERGENIC
3L	6292465	3L_6292465_SNP [dm3] 3L_6299365_SNP [dm6]	G	T	2.406e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3860164	X_3860164_SNP [dm3] X_3966131_SNP [dm6]	A	G	2.414e^-4	0.727	SYNONYMOUS_CODING CG6428 UPSTREAM lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	15338771	2L_15338771_SNP [dm3] 2L_15338771_SNP [dm6]	C	T	2.414e^-4	0.727	INTERGENIC
3R	10384922	3R_10384922_SNP [dm3] 3R_14559200_SNP [dm6]	T	C	2.429e^-4	0.727	UTR_3_PRIME CG14854 UPSTREAM Pde6
3R	12849213	3R_12849213_SNP [dm3] 3R_17023491_SNP [dm6]	A	G	2.432e^-4	0.727	INTRON Pxd
2L	11499470	2L_11499470_SNP [dm3] 2L_11499470_SNP [dm6]	T	C	2.433e^-4	0.727	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11442495	2L_11442495_SNP [dm3] 2L_11442495_SNP [dm6]	T	C	2.438e^-4	0.727	INTRON salm
X	7772653	X_7772653_SNP [dm3] X_7878620_SNP [dm6]	G	C	2.446e^-4	0.727	NON_SYNONYMOUS_CODING Ir7d
3L	4481707	3L_4481707_SNP [dm3] 3L_4481707_SNP [dm6]	A	G	2.448e^-4	0.727	DOWNSTREAM CG7465 INTERGENIC
3L	11378279	3L_11378279_SNP [dm3] 3L_11385179_SNP [dm6]	G	T	2.458e^-4	0.727	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
2L	7192212	2L_7192212_SNP [dm3] 2L_7192212_SNP [dm6]	T	A	2.465e^-4	0.727	INTRON CG4497	TF binding site mE1_TFBS_inv
3L	1413351	3L_1413351_SNP [dm3] 3L_1413351_SNP [dm6]	A	T	2.471e^-4	0.727	DOWNSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17592881	2R_17592881_SNP [dm3] 2R_21705376_SNP [dm6]	A	G	2.474e^-4	0.727	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	9291426	3L_9291426_SNP [dm3] 3L_9298326_SNP [dm6]	C	A	2.476e^-4	0.727	INTERGENIC
3R	24977547	3R_24977547_SNP [dm3] 3R_29151825_SNP [dm6]	C	T	2.478e^-4	0.727	UPSTREAM ligatin DOWNSTREAM Slbp INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6614328	X_6614328_SNP [dm3] X_6720295_SNP [dm6]	A	G	2.478e^-4	0.727	UTR_3_PRIME CG3168 DOWNSTREAM CG14441 & 1 other
2R	4553407	2R_4553407_SNP [dm3] 2R_8665902_SNP [dm6]	G	T	2.479e^-4	0.727	UPSTREAM Acsl DOWNSTREAM ptc INTRON Acsl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	12846916	3R_12846916_SNP [dm3] 3R_17021194_SNP [dm6]	G	A	2.486e^-4	0.727	UPSTREAM AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11378281	3L_11378281_SNP [dm3] 3L_11385181_SNP [dm6]	A	T	2.487e^-4	0.727	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11378285	3L_11378285_SNP [dm3] 3L_11385185_SNP [dm6]	G	T	2.487e^-4	0.727	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
2R	2398653	2R_2398653_SNP [dm3] 2R_6511148_SNP [dm6]	C	T	2.489e^-4	0.727	UPSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
X	21297506	X_21297506_SNP [dm3] X_21426479_SNP [dm6]	T	G	2.489e^-4	0.727	INTRON CG42343
2R	14413315	2R_14413315_SNP [dm3] 2R_18525810_SNP [dm6]	A	G	2.490e^-4	0.727	UTR_3_PRIME CG43066 DOWNSTREAM CG43066
3R	12730757	3R_12730757_SNP [dm3] 3R_16905035_SNP [dm6]	A	T	2.500e^-4	0.727	INTRON iab-8
3R	13429097	3R_13429097_SNP [dm3] 3R_17603375_SNP [dm6]	G	A	2.500e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8414080	3R_8414080_SNP [dm3] 3R_12588358_SNP [dm6]	C	A	2.500e^-4	0.727	INTRON Octbeta2R	TF binding site mE1_TFBS_inv
3R	16915848	3R_16915848_SNP [dm3] 3R_21090126_SNP [dm6]	G	A	2.504e^-4	0.727	INTRON RhoGAP93B & 1 other
2L	9080366	2L_9080366_DEL [dm3] 2L_9080366_DEL [dm6]	TTGTTGTATG	AC	2.504e^-4	0.727	INTERGENIC
2L	9080378	2L_9080378_SNP [dm3] 2L_9080378_SNP [dm6]	T	A	2.504e^-4	0.727	INTERGENIC
3R	13429289	3R_13429289_SNP [dm3] 3R_17603567_SNP [dm6]	T	A	2.508e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25066688	3R_25066688_SNP [dm3] 3R_29240966_SNP [dm6]	C	A	2.509e^-4	0.727	SYNONYMOUS_CODING CG31445 UPSTREAM CG31427
2R	14224037	2R_14224037_SNP [dm3] 2R_18336532_SNP [dm6]	T	C	2.509e^-4	0.727	INTRON sbb
3R	21246787	3R_21246787_SNP [dm3] 3R_25421065_SNP [dm6]	G	A	2.511e^-4	0.727	INTRON Fur1
3R	13429339	3R_13429339_DEL [dm3] 3R_17603617_DEL [dm6]	AG	C	2.516e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13390543	3R_13390543_SNP [dm3] 3R_17564821_SNP [dm6]	T	C	2.520e^-4	0.727	INTRON Hmx
2R	13682838	2R_13682838_SNP [dm3] 2R_17795333_SNP [dm6]	C	T	2.521e^-4	0.727	SYNONYMOUS_CODING Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	12543613	2R_12543613_SNP [dm3] 2R_16656108_SNP [dm6]	A	C	2.522e^-4	0.727	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad
2L	9701937	2L_9701937_SNP [dm3] 2L_9701937_SNP [dm6]	A	T	2.525e^-4	0.727	SYNONYMOUS_CODING pelo DOWNSTREAM CG31710	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10919881	3R_10919881_SNP [dm3] 3R_15094159_SNP [dm6]	G	C	2.529e^-4	0.727	INTRON CG6966	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19535394	3R_19535394_SNP [dm3] 3R_23709672_SNP [dm6]	A	G	2.529e^-4	0.727	UPSTREAM CG10301 INTERGENIC
3L	817261	3L_817261_SNP [dm3] 3L_817261_SNP [dm6]	G	A	2.533e^-4	0.727	INTERGENIC
2L	793796	2L_793796_SNP [dm3] 2L_793796_SNP [dm6]	C	A	2.533e^-4	0.727	INTERGENIC
3R	15221123	3R_15221123_SNP [dm3] 3R_19395401_SNP [dm6]	G	C	2.536e^-4	0.727	DOWNSTREAM CG3739 INTRON Ino80
2L	13711276	2L_13711276_SNP [dm3] 2L_13711276_SNP [dm6]	A	G	2.541e^-4	0.727	DOWNSTREAM CG7311 INTRON CG31814
3L	7851192	3L_7851192_SNP [dm3] 3L_7858092_SNP [dm6]	T	C	2.542e^-4	0.727	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4148014	2R_4148014_SNP [dm3] 2R_8260509_SNP [dm6]	G	A	2.545e^-4	0.727	DOWNSTREAM CG2291 & 2 others INTERGENIC
3L	419002	3L_419002_SNP [dm3] 3L_419002_SNP [dm6]	A	C	2.547e^-4	0.727	INTERGENIC
2R	13915111	2R_13915111_SNP [dm3] 2R_18027606_SNP [dm6]	G	T	2.551e^-4	0.727	INTERGENIC
3L	2351429	3L_2351429_SNP [dm3] 3L_2351429_SNP [dm6]	G	A	2.553e^-4	0.727	INTERGENIC
3L	7391939	3L_7391939_SNP [dm3] 3L_7398839_SNP [dm6]	T	C	2.555e^-4	0.727	SYNONYMOUS_CODING CG8562 DOWNSTREAM CG32379	TF binding site mE1_TFBS_cad
2R	12545549	2R_12545549_SNP [dm3] 2R_16658044_SNP [dm6]	C	T	2.555e^-4	0.727	INTRON Picot
3R	9980514	3R_9980514_SNP [dm3] 3R_14154792_SNP [dm6]	T	C	2.559e^-4	0.727	NON_SYNONYMOUS_CODING CG31533 UPSTREAM CG9722 & 1 other
3L	8568071	3L_8568071_SNP [dm3] 3L_8574971_SNP [dm6]	C	G	2.569e^-4	0.727	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12845673	3R_12845673_SNP [dm3] 3R_17019951_SNP [dm6]	A	G	2.569e^-4	0.727	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3219088	3L_3219088_SNP [dm3] 3L_3219088_SNP [dm6]	G	A	2.575e^-4	0.727	UPSTREAM CG12034 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7857107	3L_7857107_SNP [dm3] 3L_7864007_SNP [dm6]	T	C	2.581e^-4	0.727	INTRON Pdp1
3L	11378351	3L_11378351_SNP [dm3] 3L_11385251_SNP [dm6]	A	T	2.582e^-4	0.727	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3R	25185457	3R_25185457_SNP [dm3] 3R_29359735_SNP [dm6]	T	A	2.586e^-4	0.727	INTERGENIC
3L	16399187	3L_16399187_SNP [dm3] 3L_16406087_SNP [dm6]	T	C	2.590e^-4	0.727	INTRON fax	TF binding site mE1_TFBS_sens
X	3221848	X_3221848_SNP [dm3] X_3327815_SNP [dm6]	C	G	2.592e^-4	0.727	INTRON CR44886 & 1 other
3R	20224047	3R_20224047_SNP [dm3] 3R_24398325_SNP [dm6]	A	T	2.598e^-4	0.727	UTR_3_PRIME nAChRalpha1
X	6789048	X_6789048_SNP [dm3] X_6895015_SNP [dm6]	T	A	2.610e^-4	0.727	INTERGENIC
2R	9313798	2R_9313798_SNP [dm3] 2R_13426293_SNP [dm6]	T	C	2.619e^-4	0.727	INTRON CG42321	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	6334956	3L_6334956_SNP [dm3] 3L_6341856_SNP [dm6]	G	T	2.621e^-4	0.727	INTRON CG13300	TF binding site mE1_TFBS_sens
2R	13487296	2R_13487296_SNP [dm3] 2R_17599791_SNP [dm6]	A	T	2.625e^-4	0.727	UPSTREAM CG43920 & 1 other INTRON lack
2L	3226724	2L_3226724_DEL [dm3] 2L_3226724_DEL [dm6]	AA	A	2.628e^-4	0.727	INTERGENIC
X	15356093	X_15356093_SNP [dm3] X_15462060_SNP [dm6]	T	G	2.628e^-4	0.727	SYNONYMOUS_CODING shtd UPSTREAM CG6299 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13427219	3R_13427219_SNP [dm3] 3R_17601497_SNP [dm6]	T	A	2.641e^-4	0.727	INTERGENIC
2L	6584532	2L_6584532_SNP [dm3] 2L_6584532_SNP [dm6]	G	T	2.642e^-4	0.727	INTRON CG11319	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19510158	3R_19510158_SNP [dm3] 3R_23684436_SNP [dm6]	C	T	2.643e^-4	0.727	SYNONYMOUS_CODING CG18754 UTR_5_PRIME CG18754 DOWNSTREAM CG16710
3R	15196194	3R_15196194_SNP [dm3] 3R_19370472_SNP [dm6]	G	T	2.646e^-4	0.727	INTRON Ino80
2L	22935018	2L_22935018_SNP [dm3] 2L_23042286_SNP [dm6]	G	A	2.649e^-4	0.727	INTERGENIC
2L	6126629	2L_6126629_SNP [dm3] 2L_6126629_SNP [dm6]	C	G	2.652e^-4	0.727	DOWNSTREAM Arpc4 INTRON WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19932654	X_19932654_SNP [dm3] X_20038621_SNP [dm6]	A	T	2.654e^-4	0.727	INTRON Dop2R
3R	15278483	3R_15278483_SNP [dm3] 3R_19452761_SNP [dm6]	A	T	2.654e^-4	0.727	INTRON CG31221	TF binding site mE1_TFBS_Kr
2L	12896052	2L_12896052_SNP [dm3] 2L_12896052_SNP [dm6]	T	C	2.659e^-4	0.727	INTERGENIC
3L	5706150	3L_5706150_SNP [dm3] 3L_5713050_SNP [dm6]	T	C	2.663e^-4	0.727	UPSTREAM CG44521 INTRON sif
3R	13304131	3R_13304131_SNP [dm3] 3R_17478409_SNP [dm6]	G	C	2.664e^-4	0.727	INTRON Dscam3
2R	18671880	2R_18671880_SNP [dm3] 2R_22784375_SNP [dm6]	G	T	2.664e^-4	0.727	UTR_5_PRIME CG30270 INTRON CG42260
3R	10384940	3R_10384940_SNP [dm3] 3R_14559218_SNP [dm6]	G	A	2.667e^-4	0.727	UTR_3_PRIME CG14854 UPSTREAM Pde6
3R	26179911	3R_26179911_SNP [dm3] 3R_30354189_SNP [dm6]	A	G	2.667e^-4	0.727	INTRON hdc
2L	4790420	2L_4790420_DEL [dm3] 2L_4790420_DEL [dm6]	ACACA	A	2.676e^-4	0.727	INTRON CG15630
3L	9260385	3L_9260385_SNP [dm3] 3L_9267285_SNP [dm6]	T	A	2.680e^-4	0.727	INTRON GluRIB
3R	12845598	3R_12845598_SNP [dm3] 3R_17019876_SNP [dm6]	C	T	2.682e^-4	0.727	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14822230	2L_14822230_SNP [dm3] 2L_14822230_SNP [dm6]	C	A	2.693e^-4	0.727	INTERGENIC
2R	3933191	2R_3933191_INS [dm3] 2R_8045686_INS [dm6]	G	GT	2.693e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	19048559	3R_19048559_SNP [dm3] 3R_23222837_SNP [dm6]	T	C	2.704e^-4	0.727	NON_SYNONYMOUS_CODING cnc UPSTREAM cnc
X	21440849	X_21440849_SNP [dm3] X_21569822_SNP [dm6]	T	G	2.705e^-4	0.727	INTERGENIC
2L	16469958	2L_16469958_SNP [dm3] 2L_16469958_SNP [dm6]	C	T	2.706e^-4	0.727	INTRON dac	regulatory region REDfly_CRMs
2L	11442729	2L_11442729_SNP [dm3] 2L_11442729_SNP [dm6]	C	T	2.707e^-4	0.727	INTRON salm
2L	11500344	2L_11500344_SNP [dm3] 2L_11500344_SNP [dm6]	T	A	2.713e^-4	0.727	INTERGENIC
3L	15655439	3L_15655439_SNP [dm3] 3L_15662339_SNP [dm6]	T	G	2.720e^-4	0.727	DOWNSTREAM Eig71Ek & 1 other INTERGENIC
X	16192720	X_16192720_SNP [dm3] X_16298687_SNP [dm6]	G	A	2.720e^-4	0.727	SYNONYMOUS_CODING CG3632 UPSTREAM CG9911
3R	24597053	3R_24597053_SNP [dm3] 3R_28771331_SNP [dm6]	A	T	2.722e^-4	0.727	INTERGENIC
3R	23011239	3R_23011239_SNP [dm3] 3R_27185517_SNP [dm6]	C	G	2.723e^-4	0.727	INTRON Ser	TF binding site mE1_TFBS_HSA
2L	10586152	2L_10586152_SNP [dm3] 2L_10586152_SNP [dm6]	G	C	2.724e^-4	0.727	INTRON Trim9	TF binding site mE1_TFBS_chinmo
2L	19858912	2L_19858912_SNP [dm3] 2L_19858912_SNP [dm6]	G	C	2.731e^-4	0.727	INTRON sick
3L	6616274	3L_6616274_SNP [dm3] 3L_6623174_SNP [dm6]	A	G	2.732e^-4	0.727	UPSTREAM GluRIA INTERGENIC
2L	3211494	2L_3211494_SNP [dm3] 2L_3211494_SNP [dm6]	C	T	2.740e^-4	0.727	DOWNSTREAM CR45336 INTERGENIC
2R	18296038	2R_18296038_SNP [dm3] 2R_22408533_SNP [dm6]	A	G	2.745e^-4	0.727	UTR_5_PRIME ventrally-expressed-protein-D UTR_3_PRIME CG6044 UPSTREAM ventrally-expressed-protein-D DOWNSTREAM qkr58E-3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8567858	3L_8567858_SNP [dm3] 3L_8574758_SNP [dm6]	G	A	2.746e^-4	0.727	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7768547	3R_7768547_SNP [dm3] 3R_11942825_SNP [dm6]	A	T	2.751e^-4	0.727	INTRON Cad87A
3R	14610824	3R_14610824_SNP [dm3] 3R_18785102_SNP [dm6]	C	T	2.752e^-4	0.727	INTRON CG7720
3R	12730604	3R_12730604_SNP [dm3] 3R_16904882_SNP [dm6]	A	T	2.759e^-4	0.727	INTRON iab-8
3L	7473220	3L_7473220_DEL [dm3] 3L_7480120_DEL [dm6]	GCATTCATCATTAC...	G	2.762e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_inv
X	5566271	X_5566271_SNP [dm3] X_5672238_SNP [dm6]	C	T	2.763e^-4	0.727	UPSTREAM RpL35 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2L	19405907	2L_19405907_SNP [dm3] 2L_19405907_SNP [dm6]	T	A	2.774e^-4	0.728	INTRON Pax	TF binding site mE1_TFBS_Kr
3L	8003550	3L_8003550_SNP [dm3] 3L_8010450_SNP [dm6]	T	A	2.781e^-4	0.728	INTRON nmo
2R	14224046	2R_14224046_SNP [dm3] 2R_18336541_SNP [dm6]	C	T	2.783e^-4	0.728	INTRON sbb
2L	9407311	2L_9407311_SNP [dm3] 2L_9407311_SNP [dm6]	T	G	2.784e^-4	0.728	INTRON Shawl
3R	10382693	3R_10382693_SNP [dm3] 3R_14556971_SNP [dm6]	T	G	2.789e^-4	0.728	UPSTREAM Pde6 INTRON Pde6
2R	14062607	2R_14062607_SNP [dm3] 2R_18175102_SNP [dm6]	C	A	2.795e^-4	0.729	UTR_3_PRIME CG10916 DOWNSTREAM CG5726 & 1 other
2L	3173358	2L_3173358_SNP [dm3] 2L_3173358_SNP [dm6]	C	A	2.797e^-4	0.729	NON_SYNONYMOUS_CODING CG31698 UPSTREAM CR44003 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	7915220	X_7915220_SNP [dm3] X_8021187_SNP [dm6]	C	G	2.802e^-4	0.729	SYNONYMOUS_CODING CG15333 INTRON Tbh
2L	9063590	2L_9063590_SNP [dm3] 2L_9063590_SNP [dm6]	C	T	2.805e^-4	0.729	INTRON CG31708	TF binding site mE1_TFBS_inv
2R	4087564	2R_4087564_SNP [dm3] 2R_8200059_SNP [dm6]	G	A	2.811e^-4	0.729	INTRON LRP1
2L	3699109	2L_3699109_SNP [dm3] 2L_3699109_SNP [dm6]	C	T	2.831e^-4	0.734	UPSTREAM CG42464 & 1 other INTERGENIC
2L	6212324	2L_6212324_SNP [dm3] 2L_6212324_SNP [dm6]	G	A	2.846e^-4	0.734	INTERGENIC
2R	10889376	2R_10889376_SNP [dm3] 2R_15001871_SNP [dm6]	A	G	2.848e^-4	0.734	INTERGENIC
3R	22231059	3R_22231059_SNP [dm3] 3R_26405337_SNP [dm6]	T	C	2.854e^-4	0.734	INTERGENIC
2L	884119	2L_884119_SNP [dm3] 2L_884119_SNP [dm6]	G	T	2.854e^-4	0.734	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2745565	3L_2745565_SNP [dm3] 3L_2745565_SNP [dm6]	A	G	2.855e^-4	0.734	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6189291	X_6189291_SNP [dm3] X_6295258_SNP [dm6]	C	T	2.864e^-4	0.734	UTR_5_PRIME CG15891 UPSTREAM CG15892 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens
3L	7325971	3L_7325971_SNP [dm3] 3L_7332871_SNP [dm6]	T	A	2.864e^-4	0.734	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other DOWNSTREAM CG43780 & 1 other	TF binding site mE1_TFBS_sens
3R	18936602	3R_18936602_SNP [dm3] 3R_23110880_SNP [dm6]	A	G	2.866e^-4	0.734	INTRON CG13830
2R	13921144	2R_13921144_SNP [dm3] 2R_18033639_SNP [dm6]	C	G	2.868e^-4	0.734	INTERGENIC
2R	7102282	2R_7102282_SNP [dm3] 2R_11214777_SNP [dm6]	C	A	2.879e^-4	0.734	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20254450	3R_20254450_SNP [dm3] 3R_24428728_SNP [dm6]	T	G	2.880e^-4	0.734	INTRON nAChRalpha1
3L	7560879	3L_7560879_SNP [dm3] 3L_7567779_SNP [dm6]	T	G	2.880e^-4	0.734	INTRON frac
2R	19849901	2R_19849901_SNP [dm3] 2R_23962378_SNP [dm6]	A	T	2.894e^-4	0.736	UPSTREAM Fmo-1 DOWNSTREAM alpha-catenin-related INTRON CG13566
3R	25066703	3R_25066703_SNP [dm3] 3R_29240981_SNP [dm6]	T	C	2.896e^-4	0.736	SYNONYMOUS_CODING CG31445 UPSTREAM CG31427
2R	13487515	2R_13487515_SNP [dm3] 2R_17600010_SNP [dm6]	G	A	2.900e^-4	0.736	SYNONYMOUS_CODING lack UPSTREAM CG43920 & 1 other	TF binding site mE1_TFBS_cad
2L	5564823	2L_5564823_SNP [dm3] 2L_5564823_SNP [dm6]	A	G	2.908e^-4	0.737	UPSTREAM snRNA:U4:25F EXON CR44794	TF binding site mE1_TFBS_cad
3L	13486105	3L_13486105_SNP [dm3] 3L_13493005_SNP [dm6]	G	A	2.932e^-4	0.74	INTRON Tgi
3L	9027490	3L_9027490_SNP [dm3] 3L_9034390_SNP [dm6]	A	G	2.934e^-4	0.74	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2L	7196069	2L_7196069_SNP [dm3] 2L_7196069_SNP [dm6]	A	C	2.935e^-4	0.74	INTRON CG4502
2R	6433856	2R_6433856_SNP [dm3] 2R_10546351_SNP [dm6]	A	G	2.940e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25825890	3R_25825890_SNP [dm3] 3R_30000168_SNP [dm6]	A	C	2.941e^-4	0.74	UPSTREAM Tace DOWNSTREAM CG11504 INTRON CG34298	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2536229	3L_2536229_SNP [dm3] 3L_2536229_SNP [dm6]	T	A	2.943e^-4	0.74	INTRON Spn	TF binding site mE1_TFBS_chinmo
3L	7899039	3L_7899039_SNP [dm3] 3L_7905939_SNP [dm6]	T	C	2.955e^-4	0.741	INTRON pbl
3R	21608714	3R_21608714_SNP [dm3] 3R_25782992_SNP [dm6]	C	G	2.958e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10384933	3R_10384933_SNP [dm3] 3R_14559211_SNP [dm6]	T	G	2.969e^-4	0.741	UTR_3_PRIME CG14854 UPSTREAM Pde6
3R	3801353	3R_3801353_SNP [dm3] 3R_7975631_SNP [dm6]	T	C	2.971e^-4	0.741	SYNONYMOUS_CODING CD98hc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9173674	3R_9173674_SNP [dm3] 3R_13347952_SNP [dm6]	A	C	2.972e^-4	0.741	INTERGENIC
2R	14644473	2R_14644473_SNP [dm3] 2R_18756968_SNP [dm6]	A	G	2.975e^-4	0.741	SYNONYMOUS_CODING Cyp12b2 DOWNSTREAM Jabba
3R	12851690	3R_12851690_SNP [dm3] 3R_17025968_SNP [dm6]	T	A	2.980e^-4	0.741	SYNONYMOUS_CODING Pxd
2L	5996407	2L_5996407_SNP [dm3] 2L_5996407_SNP [dm6]	C	G	2.985e^-4	0.741	SYNONYMOUS_CODING lid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo
2R	11163763	2R_11163763_SNP [dm3] 2R_15276258_SNP [dm6]	C	T	2.992e^-4	0.741	INTRON Trpm
3L	7857539	3L_7857539_SNP [dm3] 3L_7864439_SNP [dm6]	G	A	2.993e^-4	0.741	INTRON Pdp1
2L	5167934	2L_5167934_SNP [dm3] 2L_5167934_SNP [dm6]	T	A	2.994e^-4	0.741	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	16921624	2L_16921624_SNP [dm3] 2L_16921624_SNP [dm6]	G	A	3.010e^-4	0.741	INTERGENIC
2R	17436376	2R_17436376_SNP [dm3] 2R_21548871_SNP [dm6]	G	A	3.011e^-4	0.741	INTRON Egfr
X	16444331	X_16444331_SNP [dm3] X_16550298_SNP [dm6]	T	C	3.011e^-4	0.741	SYNONYMOUS_CODING Arp2	TF binding site mE1_TFBS_sens
3L	7621394	3L_7621394_SNP [dm3] 3L_7628294_SNP [dm6]	A	G	3.016e^-4	0.741	INTRON CG33275	TF binding site mE1_TFBS_inv
3R	13429287	3R_13429287_SNP [dm3] 3R_17603565_SNP [dm6]	A	T	3.018e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20220181	3R_20220181_SNP [dm3] 3R_24394459_SNP [dm6]	C	A	3.018e^-4	0.741	UTR_3_PRIME nAChRalpha1 DOWNSTREAM CG13616
3R	12861402	3R_12861402_SNP [dm3] 3R_17035680_SNP [dm6]	G	A	3.021e^-4	0.741	SYNONYMOUS_CODING CG4009 DOWNSTREAM CG18213	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4134566	3L_4134566_SNP [dm3] 3L_4134566_SNP [dm6]	T	C	3.025e^-4	0.741	UPSTREAM ens DOWNSTREAM RfC4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15196193	3R_15196193_SNP [dm3] 3R_19370471_SNP [dm6]	C	T	3.031e^-4	0.741	INTRON Ino80
2L	11711817	2L_11711817_SNP [dm3] 2L_11711817_SNP [dm6]	T	A	3.041e^-4	0.741	INTERGENIC
3R	13898268	3R_13898268_SNP [dm3] 3R_18072546_SNP [dm6]	A	G	3.041e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14045827	3R_14045827_SNP [dm3] 3R_18220105_SNP [dm6]	G	A	3.046e^-4	0.741	NON_SYNONYMOUS_CODING CG7183 UPSTREAM CG7988	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11286932	2L_11286932_SNP [dm3] 2L_11286932_SNP [dm6]	T	C	3.048e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10129452	2L_10129452_DEL [dm3] 2L_10129452_DEL [dm6]	AAAGCACATA	A	3.052e^-4	0.741	INTRON CG44153	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3742662	2L_3742662_SNP [dm3] 2L_3742662_SNP [dm6]	A	G	3.057e^-4	0.741	INTRON CG10019
3L	8146681	3L_8146681_SNP [dm3] 3L_8153581_SNP [dm6]	C	T	3.062e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17709820	2L_17709820_SNP [dm3] 2L_17709820_SNP [dm6]	A	T	3.065e^-4	0.741	INTRON CadN
3R	19837377	3R_19837377_SNP [dm3] 3R_24011655_SNP [dm6]	A	G	3.070e^-4	0.741	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi
3R	10386278	3R_10386278_SNP [dm3] 3R_14560556_SNP [dm6]	T	C	3.075e^-4	0.741	UPSTREAM CG14850 & 1 other INTERGENIC
3L	17047815	3L_17047815_SNP [dm3] 3L_17054715_SNP [dm6]	G	A	3.075e^-4	0.741	UTR_3_PRIME rogdi UPSTREAM CG7724
3R	26615181	3R_26615181_SNP [dm3] 3R_30789459_SNP [dm6]	T	A	3.079e^-4	0.741	DOWNSTREAM wts & 1 other INTERGENIC
2L	13711382	2L_13711382_SNP [dm3] 2L_13711382_SNP [dm6]	T	G	3.086e^-4	0.741	DOWNSTREAM CG7311 INTRON CG31814
2L	1352768	2L_1352768_SNP [dm3] 2L_1352768_SNP [dm6]	T	G	3.094e^-4	0.741	SYNONYMOUS_CODING CG5556 DOWNSTREAM CG5561
3R	13411527	3R_13411527_SNP [dm3] 3R_17585805_SNP [dm6]	A	T	3.095e^-4	0.741	INTERGENIC
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	3.099e^-4	0.741	INTRON salm
2L	11712081	2L_11712081_SNP [dm3] 2L_11712081_SNP [dm6]	G	C	3.103e^-4	0.741	INTERGENIC
3R	10087266	3R_10087266_SNP [dm3] 3R_14261544_SNP [dm6]	A	G	3.110e^-4	0.741	SYNONYMOUS_CODING CG14841 UPSTREAM CG14840 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12851856	3R_12851856_SNP [dm3] 3R_17026134_SNP [dm6]	T	C	3.125e^-4	0.741	INTRON Pxd
3R	25171124	3R_25171124_SNP [dm3] 3R_29345402_SNP [dm6]	T	C	3.126e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
3R	12841517	3R_12841517_SNP [dm3] 3R_17015795_SNP [dm6]	C	A	3.130e^-4	0.741	UPSTREAM Pxd INTRON Pxd
2L	14752781	2L_14752781_SNP [dm3] 2L_14752781_SNP [dm6]	A	G	3.131e^-4	0.741	INTERGENIC
3L	12583474	3L_12583474_SNP [dm3] 3L_12590374_SNP [dm6]	G	A	3.134e^-4	0.741	INTRON ara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20456767	X_20456767_SNP [dm3] X_20585740_SNP [dm6]	T	C	3.134e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23327436	3R_23327436_SNP [dm3] 3R_27501714_SNP [dm6]	T	C	3.140e^-4	0.741	NON_SYNONYMOUS_CODING CG43139 DOWNSTREAM CG5402
X	8952250	X_8952250_SNP [dm3] X_9058217_SNP [dm6]	G	T	3.141e^-4	0.741	INTRON CG15365
2L	17864318	2L_17864318_SNP [dm3] 2L_17864318_SNP [dm6]	C	A	3.144e^-4	0.741	UTR_5_PRIME CadN2
2L	3211485	2L_3211485_SNP [dm3] 2L_3211485_SNP [dm6]	T	C	3.144e^-4	0.741	DOWNSTREAM CR45336 INTERGENIC
3L	5706094	3L_5706094_SNP [dm3] 3L_5712994_SNP [dm6]	G	A	3.146e^-4	0.741	UPSTREAM CG44521 INTRON sif
3L	4584101	3L_4584101_SNP [dm3] 3L_4584101_SNP [dm6]	C	T	3.146e^-4	0.741	INTRON CG42540
2R	17227861	2R_17227861_SNP [dm3] 2R_21340356_SNP [dm6]	C	T	3.155e^-4	0.743	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5563204	2L_5563204_SNP [dm3] 2L_5563204_SNP [dm6]	A	T	3.161e^-4	0.743	INTRON GluRIIB	TF binding site mE1_TFBS_cad
2L	14790283	2L_14790283_SNP [dm3] 2L_14790283_SNP [dm6]	A	C	3.168e^-4	0.743	INTERGENIC
3L	10823790	3L_10823790_SNP [dm3] 3L_10830690_SNP [dm6]	T	C	3.181e^-4	0.743	INTERGENIC
2L	5245574	2L_5245574_SNP [dm3] 2L_5245574_SNP [dm6]	T	C	3.185e^-4	0.743	INTRON tkv	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
3R	17222945	3R_17222945_SNP [dm3] 3R_21397223_SNP [dm6]	G	A	3.185e^-4	0.743	DOWNSTREAM CG6475 INTERGENIC
3L	7621397	3L_7621397_SNP [dm3] 3L_7628297_SNP [dm6]	A	G	3.189e^-4	0.743	INTRON CG33275	TF binding site mE1_TFBS_inv
2L	17724986	2L_17724986_SNP [dm3] 2L_17724986_SNP [dm6]	A	C	3.195e^-4	0.743	INTRON CadN
3R	17490492	3R_17490492_SNP [dm3] 3R_21664770_SNP [dm6]	T	A	3.199e^-4	0.743	INTRON CG15497	TF binding site mE1_TFBS_bab1
3R	17490529	3R_17490529_SNP [dm3] 3R_21664807_SNP [dm6]	T	C	3.202e^-4	0.743	INTRON CG15497	TF binding site mE1_TFBS_bab1
X	10048245	X_10048245_SNP [dm3] X_10154212_SNP [dm6]	A	T	3.210e^-4	0.743	INTRON CR44894 & 1 other
2R	17882587	2R_17882587_SNP [dm3] 2R_21995082_SNP [dm6]	G	T	3.210e^-4	0.743	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14753536	2L_14753536_SNP [dm3] 2L_14753536_SNP [dm6]	C	T	3.214e^-4	0.743	INTERGENIC
2L	12185274	2L_12185274_SNP [dm3] 2L_12185274_SNP [dm6]	C	A	3.216e^-4	0.743	INTRON aret
X	19367117	X_19367117_SNP [dm3] X_19473084_SNP [dm6]	A	G	3.218e^-4	0.743	INTERGENIC
2R	14224079	2R_14224079_SNP [dm3] 2R_18336574_SNP [dm6]	G	A	3.219e^-4	0.743	INTRON sbb
2L	8067112	2L_8067112_SNP [dm3] 2L_8067112_SNP [dm6]	G	A	3.221e^-4	0.743	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
2L	6277580	2L_6277580_SNP [dm3] 2L_6277580_SNP [dm6]	C	G	3.224e^-4	0.743	INTRON Ddr
3L	15070029	3L_15070029_SNP [dm3] 3L_15076929_SNP [dm6]	G	C	3.236e^-4	0.743	UTR_3_PRIME Or71a INTRON cp309
3R	18267046	3R_18267046_SNP [dm3] 3R_22441324_SNP [dm6]	A	G	3.237e^-4	0.743	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_cad
3R	12084734	3R_12084734_SNP [dm3] 3R_16259012_SNP [dm6]	C	T	3.245e^-4	0.743	SYNONYMOUS_CODING tara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8495168	2L_8495168_SNP [dm3] 2L_8495168_SNP [dm6]	G	A	3.247e^-4	0.743	SYNONYMOUS_CODING Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11191177	3L_11191177_SNP [dm3] 3L_11198077_SNP [dm6]	A	T	3.252e^-4	0.743	UPSTREAM GlcAT-P DOWNSTREAM Plod INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7389596	3L_7389596_SNP [dm3] 3L_7396496_SNP [dm6]	C	G	3.254e^-4	0.743	NON_SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563	TF binding site mE1_TFBS_HSA
2L	16570446	2L_16570446_SNP [dm3] 2L_16570446_SNP [dm6]	T	C	3.257e^-4	0.743	INTRON CG42389
2L	10502211	2L_10502211_SNP [dm3] 2L_10502211_SNP [dm6]	G	A	3.262e^-4	0.743	INTRON Myo31DF
2L	9080381	2L_9080381_SNP [dm3] 2L_9080381_SNP [dm6]	G	A	3.265e^-4	0.743	INTERGENIC
2L	12097457	2L_12097457_SNP [dm3] 2L_12097457_SNP [dm6]	T	C	3.265e^-4	0.743	NON_SYNONYMOUS_CODING Mt2 UPSTREAM CG6712 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	10007746	2R_10007746_SNP [dm3] 2R_14120241_SNP [dm6]	G	A	3.282e^-4	0.743	INTRON Prosap
3R	14977420	3R_14977420_SNP [dm3] 3R_19151698_SNP [dm6]	C	A	3.295e^-4	0.743	INTRON CG5835
3R	15415248	3R_15415248_SNP [dm3] 3R_19589526_SNP [dm6]	T	C	3.295e^-4	0.743	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9563084	3L_9563084_SNP [dm3] 3L_9569984_SNP [dm6]	C	A	3.301e^-4	0.743	INTRON CG42673
3R	19048590	3R_19048590_INS [dm3] 3R_23222868_INS [dm6]	T	TTCCAGAGA	3.302e^-4	0.743	FRAME_SHIFT cnc UPSTREAM cnc
2L	10043651	2L_10043651_SNP [dm3] 2L_10043651_SNP [dm6]	G	C	3.304e^-4	0.743	INTERGENIC
3R	17774256	3R_17774256_SNP [dm3] 3R_21948534_SNP [dm6]	G	A	3.307e^-4	0.743	UPSTREAM Eip93F INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
3L	16999355	3L_16999355_SNP [dm3] 3L_17006255_SNP [dm6]	T	G	3.314e^-4	0.743	INTRON CG3764
3L	7621388	3L_7621388_INS [dm3] 3L_7628288_INS [dm6]	C	CATAC	3.326e^-4	0.743	INTRON CG33275	TF binding site mE1_TFBS_inv
2R	9761086	2R_9761086_SNP [dm3] 2R_13873581_SNP [dm6]	G	A	3.336e^-4	0.743	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
X	11179812	X_11179812_SNP [dm3] X_11285779_SNP [dm6]	T	C	3.343e^-4	0.743	INTRON CG44422
3R	15449207	3R_15449207_SNP [dm3] 3R_19623485_SNP [dm6]	G	T	3.349e^-4	0.743	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12236798	3L_12236798_INS [dm3] 3L_12243698_INS [dm6]	AGGC	TATTTAATTTACA...	3.355e^-4	0.743	INTRON app
3L	6092565	3L_6092565_SNP [dm3] 3L_6099465_SNP [dm6]	C	A	3.357e^-4	0.743	INTRON Ets65A
3R	17490607	3R_17490607_SNP [dm3] 3R_21664885_SNP [dm6]	G	A	3.362e^-4	0.743	INTRON CG15497	TF binding site mE1_TFBS_bab1
2R	6448500	2R_6448500_SNP [dm3] 2R_10560995_SNP [dm6]	T	C	3.363e^-4	0.743	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16435764	X_16435764_SNP [dm3] X_16541731_SNP [dm6]	T	G	3.367e^-4	0.743	UPSTREAM CG9903 DOWNSTREAM CG9902 INTERGENIC	transposable element FlyBase
X	4368070	X_4368070_DEL [dm3] X_4474037_DEL [dm6]	CC	C	3.371e^-4	0.743	INTRON bi & 1 other
2L	1552963	2L_1552963_DEL [dm3] 2L_1552963_DEL [dm6]	AAAAATAAAC	A	3.374e^-4	0.743	INTERGENIC
2L	620316	2L_620316_SNP [dm3] 2L_620316_SNP [dm6]	A	G	3.376e^-4	0.743	UTR_3_PRIME lectin-21Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11900211	3R_11900211_SNP [dm3] 3R_16074489_SNP [dm6]	C	G	3.377e^-4	0.743	NON_SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7272620	2L_7272620_SNP [dm3] 2L_7272620_SNP [dm6]	C	T	3.379e^-4	0.743	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11894023	3R_11894023_SNP [dm3] 3R_16068301_SNP [dm6]	A	G	3.390e^-4	0.743	UPSTREAM CG10185 DOWNSTREAM Mhcl INTERGENIC	TF binding site mE1_TFBS_cad
2R	9442702	2R_9442702_SNP [dm3] 2R_13555197_SNP [dm6]	G	A	3.391e^-4	0.743	SYNONYMOUS_CODING Roe1 UPSTREAM link	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	5167796	2L_5167796_SNP [dm3] 2L_5167796_SNP [dm6]	T	G	3.396e^-4	0.743	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	5169361	2L_5169361_SNP [dm3] 2L_5169361_SNP [dm6]	T	C	3.404e^-4	0.743	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	8437765	3L_8437765_SNP [dm3] 3L_8444665_SNP [dm6]	A	G	3.411e^-4	0.743	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24977796	3R_24977796_SNP [dm3] 3R_29152074_SNP [dm6]	G	A	3.411e^-4	0.743	UTR_3_PRIME Slbp UPSTREAM ligatin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10043653	2L_10043653_SNP [dm3] 2L_10043653_SNP [dm6]	T	C	3.414e^-4	0.743	INTERGENIC
3L	4136262	3L_4136262_SNP [dm3] 3L_4136262_SNP [dm6]	T	C	3.418e^-4	0.743	UPSTREAM RfC4 DOWNSTREAM Rop INTERGENIC
3L	9114416	3L_9114416_SNP [dm3] 3L_9121316_SNP [dm6]	G	A	3.421e^-4	0.743	INTRON bol
3R	14904281	3R_14904281_SNP [dm3] 3R_19078559_SNP [dm6]	T	G	3.427e^-4	0.743	INTRON cdi
3L	4486489	3L_4486489_SNP [dm3] 3L_4486489_SNP [dm6]	C	G	3.427e^-4	0.743	SYNONYMOUS_CODING CG13722	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12786779	3R_12786779_SNP [dm3] 3R_16961057_SNP [dm6]	A	G	3.429e^-4	0.743	UPSTREAM Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10353359	2R_10353359_SNP [dm3] 2R_14465854_SNP [dm6]	T	A	3.434e^-4	0.743	UTR_3_PRIME Oaz
3R	16584388	3R_16584388_SNP [dm3] 3R_20758666_SNP [dm6]	A	C	3.439e^-4	0.743	SYNONYMOUS_CODING CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3931271	X_3931271_SNP [dm3] X_4037238_SNP [dm6]	C	G	3.443e^-4	0.743	INTERGENIC
3L	412113	3L_412113_SNP [dm3] 3L_412113_SNP [dm6]	T	A	3.443e^-4	0.743	INTERGENIC
X	3931267	X_3931267_SNP [dm3] X_4037234_SNP [dm6]	T	C	3.447e^-4	0.743	INTERGENIC
3L	7621377	3L_7621377_SNP [dm3] 3L_7628277_SNP [dm6]	T	C	3.458e^-4	0.743	INTRON CG33275	TF binding site mE1_TFBS_inv
X	13291502	X_13291502_SNP [dm3] X_13397469_SNP [dm6]	A	G	3.459e^-4	0.743	INTRON CG1673	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10048252	X_10048252_SNP [dm3] X_10154219_SNP [dm6]	G	A	3.462e^-4	0.743	INTRON CR44894 & 1 other
2R	4524595	2R_4524595_SNP [dm3] 2R_8637090_SNP [dm6]	C	T	3.467e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	129999	2L_129999_DEL [dm3] 2L_129999_DEL [dm6]	TTAGATGT	T	3.473e^-4	0.743	UPSTREAM CG3164 INTRON CG11455 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16722436	3R_16722436_SNP [dm3] 3R_20896714_SNP [dm6]	C	T	3.479e^-4	0.743	SYNONYMOUS_CODING CG10830	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6773599	X_6773599_SNP [dm3] X_6879566_SNP [dm6]	T	C	3.480e^-4	0.743	SYNONYMOUS_CODING CG43736 UTR_3_PRIME CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	11791390	2L_11791390_SNP [dm3] 2L_11791390_SNP [dm6]	G	A	3.485e^-4	0.743	DOWNSTREAM CG14932 INTRON Tsp33B	TF binding site mE1_TFBS_cad
3R	23509179	3R_23509179_SNP [dm3] 3R_27683457_SNP [dm6]	A	G	3.486e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	21837854	X_21837854_SNP [dm3] X_22436019_SNP [dm6]	T	C	3.501e^-4	0.743	INTERGENIC	transposable element FlyBase
X	17911735	X_17911735_INS [dm3] X_18017702_INS [dm6]	A	ATTAAATTAA	3.505e^-4	0.743	INTRON Sh
3R	10087270	3R_10087270_SNP [dm3] 3R_14261548_SNP [dm6]	G	T	3.507e^-4	0.743	NON_SYNONYMOUS_CODING CG14841 UPSTREAM CG14840 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15543793	2R_15543793_INS [dm3] 2R_19656288_INS [dm6]	T	TT	3.508e^-4	0.743	DOWNSTREAM CR44214 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16556301	3L_16556301_SNP [dm3] 3L_16563201_SNP [dm6]	C	G	3.508e^-4	0.743	DOWNSTREAM Mipp1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	11506024	2L_11506024_SNP [dm3] 2L_11506024_SNP [dm6]	A	T	3.509e^-4	0.743	INTRON spz4	TF binding site mE1_TFBS_cad
3R	20964911	3R_20964911_SNP [dm3] 3R_25139189_SNP [dm6]	T	C	3.511e^-4	0.743	SYNONYMOUS_CODING danr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	6274987	2L_6274987_SNP [dm3] 2L_6274987_SNP [dm6]	G	T	3.524e^-4	0.743	INTRON Ddr
2L	16188711	2L_16188711_SNP [dm3] 2L_16188711_SNP [dm6]	T	A	3.527e^-4	0.743	INTRON Ca-alpha1D
2L	4218245	2L_4218245_SNP [dm3] 2L_4218245_SNP [dm6]	C	T	3.529e^-4	0.743	INTRON ft
3R	13017415	3R_13017415_SNP [dm3] 3R_17191693_SNP [dm6]	G	A	3.536e^-4	0.743	INTRON Mur89F
3R	11837053	3R_11837053_SNP [dm3] 3R_16011331_SNP [dm6]	T	G	3.540e^-4	0.743	UPSTREAM GATAe INTRON GATAe	TF binding site mE1_TFBS_cad
2R	14222034	2R_14222034_SNP [dm3] 2R_18334529_SNP [dm6]	A	C	3.545e^-4	0.743	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19546508	3R_19546508_SNP [dm3] 3R_23720786_SNP [dm6]	T	A	3.550e^-4	0.743	SYNONYMOUS_CODING CG10232
3L	10702335	3L_10702335_DEL [dm3] 3L_10709235_DEL [dm6]	TG	T	3.558e^-4	0.743	INTERGENIC
2L	13320679	2L_13320679_SNP [dm3] 2L_13320679_SNP [dm6]	C	T	3.559e^-4	0.743	INTRON CG43778
2L	13711281	2L_13711281_SNP [dm3] 2L_13711281_SNP [dm6]	C	A	3.564e^-4	0.743	DOWNSTREAM CG7311 INTRON CG31814
2R	12983040	2R_12983040_SNP [dm3] 2R_17095535_SNP [dm6]	C	T	3.564e^-4	0.743	INTRON GstS1	TF binding site mE1_TFBS_cad
3R	13429335	3R_13429335_SNP [dm3] 3R_17603613_SNP [dm6]	T	A	3.565e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6757677	2L_6757677_INS [dm3] 2L_6757677_INS [dm6]	T	TT	3.568e^-4	0.743	DOWNSTREAM CG11322 INTERGENIC
2R	14222033	2R_14222033_SNP [dm3] 2R_18334528_SNP [dm6]	T	A	3.570e^-4	0.743	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11191066	3L_11191066_SNP [dm3] 3L_11197966_SNP [dm6]	C	T	3.573e^-4	0.743	UPSTREAM GlcAT-P DOWNSTREAM Plod INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2383496	2L_2383496_SNP [dm3] 2L_2383496_SNP [dm6]	C	T	3.574e^-4	0.743	SYNONYMOUS_CODING CG9870 DOWNSTREAM Eogt
3L	9028854	3L_9028854_SNP [dm3] 3L_9035754_SNP [dm6]	A	T	3.576e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11791435	2L_11791435_SNP [dm3] 2L_11791435_SNP [dm6]	A	T	3.579e^-4	0.743	DOWNSTREAM CG14932 & 1 other INTRON Tsp33B	TF binding site mE1_TFBS_cad
3L	4136238	3L_4136238_DEL [dm3] 3L_4136238_DEL [dm6]	GCAAACATTAG...	G	3.583e^-4	0.743	UPSTREAM RfC4 DOWNSTREAM Rop INTERGENIC
3L	4490082	3L_4490082_SNP [dm3] 3L_4490082_SNP [dm6]	T	C	3.590e^-4	0.743	INTRON CG13722
3R	15453774	3R_15453774_SNP [dm3] 3R_19628052_SNP [dm6]	T	C	3.593e^-4	0.743	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
X	15313767	X_15313767_SNP [dm3] X_15419734_SNP [dm6]	T	C	3.596e^-4	0.743	INTRON Cngl
X	15313771	X_15313771_SNP [dm3] X_15419738_SNP [dm6]	T	C	3.596e^-4	0.743	INTRON Cngl
2R	11819511	2R_11819511_SNP [dm3] 2R_15932006_SNP [dm6]	C	A	3.597e^-4	0.743	UPSTREAM bdg DOWNSTREAM Iap2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8826226	3L_8826226_SNP [dm3] 3L_8833126_SNP [dm6]	T	G	3.599e^-4	0.743	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9279074	2R_9279074_SNP [dm3] 2R_13391569_SNP [dm6]	A	G	3.600e^-4	0.743	SYNONYMOUS_CODING CG43691
2L	16681653	2L_16681653_SNP [dm3] 2L_16681653_SNP [dm6]	G	T	3.600e^-4	0.743	UTR_3_PRIME squ UPSTREAM CG33552 DOWNSTREAM CG31807 INTRON grp
3R	23910794	3R_23910794_SNP [dm3] 3R_28085072_SNP [dm6]	T	A	3.602e^-4	0.743	DOWNSTREAM CG34362 INTRON CG34362
2R	4074129	2R_4074129_SNP [dm3] 2R_8186624_SNP [dm6]	T	A	3.602e^-4	0.743	INTRON LRP1
2L	3893119	2L_3893119_SNP [dm3] 2L_3893119_SNP [dm6]	T	A	3.602e^-4	0.743	INTRON capu
2R	13487288	2R_13487288_SNP [dm3] 2R_17599783_SNP [dm6]	A	C	3.604e^-4	0.743	UPSTREAM CG43920 & 1 other INTRON lack
2L	1484407	2L_1484407_SNP [dm3] 2L_1484407_SNP [dm6]	C	G	3.623e^-4	0.746	INTERGENIC
2L	4178716	2L_4178716_SNP [dm3] 2L_4178716_SNP [dm6]	G	A	3.633e^-4	0.746	INTERGENIC
3L	382478	3L_382478_SNP [dm3] 3L_382478_SNP [dm6]	T	G	3.638e^-4	0.746	INTRON trh
2L	6277558	2L_6277558_SNP [dm3] 2L_6277558_SNP [dm6]	G	T	3.643e^-4	0.746	INTRON Ddr
3R	9190193	3R_9190193_SNP [dm3] 3R_13364471_SNP [dm6]	C	A	3.645e^-4	0.746	UTR_5_PRIME poly UPSTREAM Dic1 INTRON poly	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	380647	3L_380647_SNP [dm3] 3L_380647_SNP [dm6]	C	G	3.646e^-4	0.746	INTRON trh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19791604	X_19791604_SNP [dm3] X_19897571_SNP [dm6]	C	T	3.648e^-4	0.746	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	22732730	3R_22732730_DEL [dm3] 3R_26907008_DEL [dm6]	GTACCGCG	G	3.655e^-4	0.746	INTRON T48	regulatory region REDfly_CRMs
2L	12126054	2L_12126054_SNP [dm3] 2L_12126054_SNP [dm6]	A	G	3.657e^-4	0.746	SYNONYMOUS_CODING CG17211
X	10118708	X_10118708_DEL [dm3] X_10224675_DEL [dm6]	TT	T	3.666e^-4	0.746	INTRON CG34408	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10353494	X_10353494_SNP [dm3] X_10459461_SNP [dm6]	G	A	3.668e^-4	0.746	SYNONYMOUS_CODING Or9a
2R	14679695	2R_14679695_SNP [dm3] 2R_18792190_SNP [dm6]	G	A	3.671e^-4	0.746	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
3R	19048598	3R_19048598_SNP [dm3] 3R_23222876_SNP [dm6]	G	A	3.680e^-4	0.746	NON_SYNONYMOUS_CODING cnc UPSTREAM cnc
3R	13445762	3R_13445762_SNP [dm3] 3R_17620040_SNP [dm6]	C	G	3.681e^-4	0.746	DOWNSTREAM tRNA:A:90C & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	12747286	3R_12747286_SNP [dm3] 3R_16921564_SNP [dm6]	G	A	3.681e^-4	0.746	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	16409409	3R_16409409_SNP [dm3] 3R_20583687_SNP [dm6]	T	C	3.681e^-4	0.746	SYNONYMOUS_CODING CG16953
3L	7896980	3L_7896980_SNP [dm3] 3L_7903880_SNP [dm6]	T	A	3.689e^-4	0.746	UPSTREAM pbl INTRON pbl	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3L	4649820	3L_4649820_SNP [dm3] 3L_4649820_SNP [dm6]	G	A	3.689e^-4	0.746	SYNONYMOUS_CODING CG32238 INTRON axo
2L	7583659	2L_7583659_SNP [dm3] 2L_7583659_SNP [dm6]	T	G	3.696e^-4	0.746	DOWNSTREAM Spn28B INTERGENIC
3R	13019438	3R_13019438_SNP [dm3] 3R_17193716_SNP [dm6]	C	T	3.704e^-4	0.747	INTRON Mur89F
3R	22231048	3R_22231048_SNP [dm3] 3R_26405326_SNP [dm6]	A	G	3.725e^-4	0.749	INTERGENIC
2L	9015475	2L_9015475_INS [dm3] 2L_9015475_INS [dm6]	C	CGTC	3.726e^-4	0.749	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3161327	2L_3161327_SNP [dm3] 2L_3161327_SNP [dm6]	C	T	3.727e^-4	0.749	SYNONYMOUS_CODING gkt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7924503	2L_7924503_SNP [dm3] 2L_7924503_SNP [dm6]	C	A	3.735e^-4	0.75	INTRON Snoo
3L	17104223	3L_17104223_SNP [dm3] 3L_17111123_SNP [dm6]	T	G	3.753e^-4	0.753	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10385354	3R_10385354_SNP [dm3] 3R_14559632_SNP [dm6]	A	G	3.764e^-4	0.754	NON_SYNONYMOUS_CODING CG14854
2L	19437195	2L_19437195_SNP [dm3] 2L_19437195_SNP [dm6]	C	A	3.779e^-4	0.755	INTRON CG10237
2L	7183734	2L_7183734_SNP [dm3] 2L_7183734_SNP [dm6]	T	A	3.782e^-4	0.755	INTRON CG4495	TF binding site BDTNP1_TFBS_twi
2L	9970282	2L_9970282_SNP [dm3] 2L_9970282_SNP [dm6]	G	A	3.784e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25178733	3R_25178733_SNP [dm3] 3R_29353011_SNP [dm6]	G	A	3.792e^-4	0.755	INTERGENIC
3R	15196190	3R_15196190_INS [dm3] 3R_19370468_INS [dm6]	G	GCAT	3.804e^-4	0.755	INTRON Ino80
2L	11503066	2L_11503066_SNP [dm3] 2L_11503066_SNP [dm6]	A	C	3.808e^-4	0.755	INTRON spz4
2L	10038134	2L_10038134_SNP [dm3] 2L_10038134_SNP [dm6]	A	T	3.808e^-4	0.755	INTRON obst-B
3R	24920931	3R_24920931_SNP [dm3] 3R_29095209_SNP [dm6]	C	T	3.818e^-4	0.755	UPSTREAM CR45030 INTRON CG11873
2L	9745583	2L_9745583_SNP [dm3] 2L_9745583_SNP [dm6]	A	G	3.822e^-4	0.755	INTRON Nckx30C
2L	9080379	2L_9080379_SNP [dm3] 2L_9080379_SNP [dm6]	A	T	3.827e^-4	0.755	INTERGENIC
3L	17020970	3L_17020970_SNP [dm3] 3L_17027870_SNP [dm6]	G	C	3.828e^-4	0.755	NON_SYNONYMOUS_CODING CG7730 DOWNSTREAM Fit2
2R	12237825	2R_12237825_SNP [dm3] 2R_16350320_SNP [dm6]	A	T	3.830e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_cad
3R	13429279	3R_13429279_SNP [dm3] 3R_17603557_SNP [dm6]	T	A	3.836e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14221804	2R_14221804_SNP [dm3] 2R_18334299_SNP [dm6]	A	T	3.836e^-4	0.755	INTRON sbb
3R	13437931	3R_13437931_SNP [dm3] 3R_17612209_SNP [dm6]	T	A	3.837e^-4	0.755	UPSTREAM Edg91 & 1 other INTERGENIC
2L	8587350	2L_8587350_SNP [dm3] 2L_8587350_SNP [dm6]	G	A	3.844e^-4	0.755	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
2R	7435651	2R_7435651_SNP [dm3] 2R_11548146_SNP [dm6]	T	C	3.848e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14879834	2R_14879834_SNP [dm3] 2R_18992329_SNP [dm6]	G	C	3.848e^-4	0.755	INTRON tn
2L	14607033	2L_14607033_SNP [dm3] 2L_14607033_SNP [dm6]	T	G	3.865e^-4	0.755	INTRON osp
3R	14287051	3R_14287051_SNP [dm3] 3R_18461329_SNP [dm6]	A	G	3.866e^-4	0.755	INTRON fru
X	18939869	X_18939869_SNP [dm3] X_19045836_SNP [dm6]	T	A	3.876e^-4	0.755	INTERGENIC
2R	15065269	2R_15065269_SNP [dm3] 2R_19177764_SNP [dm6]	T	A	3.879e^-4	0.755	UPSTREAM hppy DOWNSTREAM CG10737 INTRON CG10737
2L	13725211	2L_13725211_SNP [dm3] 2L_13725211_SNP [dm6]	C	T	3.880e^-4	0.755	INTERGENIC
3R	13429292	3R_13429292_SNP [dm3] 3R_17603570_SNP [dm6]	T	A	3.881e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15203428	3R_15203428_SNP [dm3] 3R_19377706_SNP [dm6]	A	G	3.886e^-4	0.755	UPSTREAM CG31245 INTRON Ino80	TF binding site mE1_TFBS_sens
3R	12838936	3R_12838936_SNP [dm3] 3R_17013214_SNP [dm6]	A	T	3.889e^-4	0.755	DOWNSTREAM CG8907 INTERGENIC
3R	12839083	3R_12839083_SNP [dm3] 3R_17013361_SNP [dm6]	A	C	3.889e^-4	0.755	DOWNSTREAM CG8907 INTERGENIC
3R	13390540	3R_13390540_SNP [dm3] 3R_17564818_SNP [dm6]	A	C	3.893e^-4	0.755	INTRON Hmx
3R	11837203	3R_11837203_SNP [dm3] 3R_16011481_SNP [dm6]	A	T	3.900e^-4	0.755	UPSTREAM GATAe INTRON GATAe	TF binding site mE1_TFBS_cad
3R	21357047	3R_21357047_SNP [dm3] 3R_25531325_SNP [dm6]	T	A	3.901e^-4	0.755	INTRON msi
3R	16099996	3R_16099996_SNP [dm3] 3R_20274274_SNP [dm6]	T	G	3.904e^-4	0.755	INTRON cic
3R	10921644	3R_10921644_SNP [dm3] 3R_15095922_SNP [dm6]	A	T	3.912e^-4	0.755	UPSTREAM CG6966 DOWNSTREAM CG42788 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	16661268	2L_16661268_SNP [dm3] 2L_16661268_SNP [dm6]	A	G	3.912e^-4	0.755	SYNONYMOUS_CODING CG42389	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5400762	2L_5400762_SNP [dm3] 2L_5400762_SNP [dm6]	G	C	3.921e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8634875	2L_8634875_SNP [dm3] 2L_8634875_SNP [dm6]	T	G	3.923e^-4	0.755	INTRON Sema-1a
X	16781673	X_16781673_SNP [dm3] X_16887640_SNP [dm6]	C	A	3.930e^-4	0.755	SYNONYMOUS_CODING CG4880	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
2R	14216600	2R_14216600_SNP [dm3] 2R_18329095_SNP [dm6]	C	T	3.932e^-4	0.755	INTRON sbb
3L	7473243	3L_7473243_SNP [dm3] 3L_7480143_SNP [dm6]	G	A	3.950e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7198118	2L_7198118_SNP [dm3] 2L_7198118_SNP [dm6]	A	G	3.952e^-4	0.755	INTRON CG4502
3R	18936713	3R_18936713_SNP [dm3] 3R_23110991_SNP [dm6]	G	T	3.954e^-4	0.755	INTRON CG13830
2L	16469950	2L_16469950_SNP [dm3] 2L_16469950_SNP [dm6]	A	C	3.956e^-4	0.755	INTRON dac	regulatory region REDfly_CRMs
3R	21257905	3R_21257905_SNP [dm3] 3R_25432183_SNP [dm6]	T	A	3.956e^-4	0.755	INTRON Fur1
2L	9970243	2L_9970243_DEL [dm3] 2L_9970243_DEL [dm6]	AA	A	3.962e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17237157	3L_17237157_SNP [dm3] 3L_17244057_SNP [dm6]	G	A	3.962e^-4	0.755	INTRON CG7707	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8067140	2L_8067140_SNP [dm3] 2L_8067140_SNP [dm6]	T	C	3.965e^-4	0.755	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
X	2997851	X_2997851_SNP [dm3] X_3103818_SNP [dm6]	A	T	3.967e^-4	0.755	INTRON kirre
2L	7996645	2L_7996645_SNP [dm3] 2L_7996645_SNP [dm6]	C	G	3.974e^-4	0.755	SYNONYMOUS_CODING CG7227 DOWNSTREAM CR44996
3L	5501919	3L_5501919_SNP [dm3] 3L_5508819_SNP [dm6]	T	G	3.976e^-4	0.755	INTRON CG34342
2L	4650920	2L_4650920_SNP [dm3] 2L_4650920_SNP [dm6]	G	A	3.983e^-4	0.755	UPSTREAM CG3355 INTERGENIC
3R	12848235	3R_12848235_SNP [dm3] 3R_17022513_SNP [dm6]	T	C	3.986e^-4	0.755	INTRON Pxd
3R	21165754	3R_21165754_SNP [dm3] 3R_25340032_SNP [dm6]	C	A	3.990e^-4	0.755	UTR_3_PRIME CG11902 UPSTREAM rha
2R	14222022	2R_14222022_SNP [dm3] 2R_18334517_SNP [dm6]	G	A	3.997e^-4	0.755	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10563291	2L_10563291_SNP [dm3] 2L_10563291_SNP [dm6]	T	C	4.000e^-4	0.755	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14084548	2R_14084548_SNP [dm3] 2R_18197043_SNP [dm6]	G	A	4.007e^-4	0.755	INTERGENIC
2L	11442809	2L_11442809_SNP [dm3] 2L_11442809_SNP [dm6]	A	C	4.009e^-4	0.755	INTRON salm
2R	6433852	2R_6433852_SNP [dm3] 2R_10546347_SNP [dm6]	A	G	4.010e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18134274	2L_18134274_SNP [dm3] 2L_18134274_SNP [dm6]	A	G	4.017e^-4	0.755	SYNONYMOUS_CODING kel	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14529309	2R_14529309_SNP [dm3] 2R_18641804_SNP [dm6]	G	A	4.018e^-4	0.755	SPLICE_SITE_REGION SP2637 INTRON SP2637	TF binding site mE1_TFBS_cad
2R	5249498	2R_5249498_SNP [dm3] 2R_9361993_SNP [dm6]	C	T	4.018e^-4	0.755	DOWNSTREAM CG12158 INTRON CG13954	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	11785814	2L_11785814_SNP [dm3] 2L_11785814_SNP [dm6]	G	A	4.020e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	374142	3L_374142_SNP [dm3] 3L_374142_SNP [dm6]	A	G	4.026e^-4	0.755	INTRON trh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15311955	X_15311955_SNP [dm3] X_15417922_SNP [dm6]	A	C	4.026e^-4	0.755	INTRON Cngl
3L	5327071	3L_5327071_SNP [dm3] 3L_5333971_SNP [dm6]	T	A	4.039e^-4	0.755	UPSTREAM CR45742 INTERGENIC
3L	374192	3L_374192_SNP [dm3] 3L_374192_SNP [dm6]	G	A	4.053e^-4	0.755	INTRON trh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.335e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	2.208e-07

Kruskal-Wallis test

Covariate	χ²	p-value	Significance

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2175 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	9.057e^-13	1.203e^-6	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	1.415e^-12	1.203e^-6	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	1.924e^-12	1.203e^-6	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	8.803e^-12	4.128e^-6	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	1.272e^-11	4.772e^-6	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	3.416e^-11	1.068e^-5	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	5.421e^-11	1.453e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	6.389e^-11	1.489e^-5	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	7.146e^-11	1.489e^-5	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	3.267e^-10	6.072e^-5	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	3.561e^-10	6.072e^-5	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	6.959e^-10	1.050e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	7.342e^-10	1.050e^-4	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	8.773e^-10	1.050e^-4	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	9.132e^-10	1.050e^-4	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	9.925e^-10	1.050e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	9.925e^-10	1.050e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	1.007e^-9	1.050e^-4	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	1.107e^-9	1.093e^-4	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	1.212e^-9	1.136e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	1.537e^-9	1.373e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	2.176e^-9	1.855e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	2.687e^-9	2.192e^-4	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	3.877e^-9	3.030e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	9.919e^-9	7.442e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8530229	2L_8530229_SNP [dm3] 2L_8530229_SNP [dm6]	G	A	1.517e^-8	0.001	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	2.733e^-8	0.002	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	2.918e^-8	0.002	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	3.578e^-8	0.002	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	4.092e^-8	0.003	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8530244	2L_8530244_SNP [dm3] 2L_8530244_SNP [dm6]	G	A	4.798e^-8	0.003	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	5.182e^-8	0.003	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	5.753e^-8	0.003	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	5.892e^-8	0.003	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8515035	2L_8515035_SNP [dm3] 2L_8515035_SNP [dm6]	G	T	7.355e^-8	0.004	UPSTREAM PIG-U & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	8.023e^-8	0.004	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8515600	2L_8515600_SNP [dm3] 2L_8515600_SNP [dm6]	T	C	8.991e^-8	0.005	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515482	2L_8515482_SNP [dm3] 2L_8515482_SNP [dm6]	C	T	1.006e^-7	0.005	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	1.197e^-7	0.005	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8528806	2L_8528806_SNP [dm3] 2L_8528806_SNP [dm6]	A	C	1.198e^-7	0.005	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	1.208e^-7	0.005	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	1.220e^-7	0.005	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8521004	2L_8521004_SNP [dm3] 2L_8521004_SNP [dm6]	C	A	1.557e^-7	0.007	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8530374	2L_8530374_SNP [dm3] 2L_8530374_SNP [dm6]	T	C	2.171e^-7	0.009	INTRON CG17834	TF binding site mE1_TFBS_HSA
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	3.117e^-7	0.013	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8525183	2L_8525183_SNP [dm3] 2L_8525183_SNP [dm6]	G	T	3.585e^-7	0.015	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	4.104e^-7	0.016	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8523105	2L_8523105_SNP [dm3] 2L_8523105_SNP [dm6]	G	C	4.624e^-7	0.018	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8523133	2L_8523133_SNP [dm3] 2L_8523133_SNP [dm6]	G	A	4.624e^-7	0.018	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8525341	2L_8525341_SNP [dm3] 2L_8525341_SNP [dm6]	C	A	5.167e^-7	0.019	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3L	14189504	3L_14189504_SNP [dm3] 3L_14196404_SNP [dm6]	A	T	8.234e^-7	0.03	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8514798	2L_8514798_SNP [dm3] 2L_8514798_SNP [dm6]	C	T	8.806e^-7	0.032	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1344223	2L_1344223_SNP [dm3] 2L_1344223_SNP [dm6]	G	A	1.068e^-6	0.038	UPSTREAM Cdlc2 & 1 other INTERGENIC
2L	8525339	2L_8525339_SNP [dm3] 2L_8525339_SNP [dm6]	G	A	1.252e^-6	0.043	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	1.367e^-6	0.047	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8525349	2L_8525349_SNP [dm3] 2L_8525349_SNP [dm6]	C	T	1.500e^-6	0.05	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	1245080	2L_1245080_SNP [dm3] 2L_1245080_SNP [dm6]	G	A	1.687e^-6	0.056	INTERGENIC
3L	14189503	3L_14189503_SNP [dm3] 3L_14196403_SNP [dm6]	G	A	1.923e^-6	0.062	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8520815	2L_8520815_SNP [dm3] 2L_8520815_SNP [dm6]	T	C	1.938e^-6	0.062	NON_SYNONYMOUS_CODING CG13091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8513167	2L_8513167_SNP [dm3] 2L_8513167_SNP [dm6]	C	T	1.983e^-6	0.062	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8515461	2L_8515461_SNP [dm3] 2L_8515461_SNP [dm6]	T	C	2.118e^-6	0.065	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8525344	2L_8525344_SNP [dm3] 2L_8525344_SNP [dm6]	G	A	2.202e^-6	0.065	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525346	2L_8525346_SNP [dm3] 2L_8525346_SNP [dm6]	C	T	2.202e^-6	0.065	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	15458384	2L_15458384_SNP [dm3] 2L_15458384_SNP [dm6]	T	C	2.227e^-6	0.065	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8514835	2L_8514835_SNP [dm3] 2L_8514835_SNP [dm6]	A	T	2.238e^-6	0.065	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9381344	3R_9381344_SNP [dm3] 3R_13555622_SNP [dm6]	C	A	2.425e^-6	0.069	INTERGENIC
2L	3297684	2L_3297684_SNP [dm3] 2L_3297684_SNP [dm6]	T	C	2.518e^-6	0.07	INTRON CG9663
3R	9384896	3R_9384896_SNP [dm3] 3R_13559174_SNP [dm6]	C	T	2.582e^-6	0.071	INTERGENIC
2L	8515377	2L_8515377_SNP [dm3] 2L_8515377_SNP [dm6]	T	C	2.646e^-6	0.071	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8525348	2L_8525348_SNP [dm3] 2L_8525348_SNP [dm6]	T	A	2.656e^-6	0.071	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8529262	2L_8529262_SNP [dm3] 2L_8529262_SNP [dm6]	T	C	2.796e^-6	0.074	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8517273	2L_8517273_SNP [dm3] 2L_8517273_SNP [dm6]	A	G	2.971e^-6	0.077	NON_SYNONYMOUS_CODING mRpL51 UPSTREAM CG13090 DOWNSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8515386	2L_8515386_SNP [dm3] 2L_8515386_SNP [dm6]	T	C	3.116e^-6	0.08	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8527887	2L_8527887_SNP [dm3] 2L_8527887_SNP [dm6]	C	A	3.157e^-6	0.08	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15458068	2L_15458068_SNP [dm3] 2L_15458068_SNP [dm6]	T	G	3.286e^-6	0.082	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	3.584e^-6	0.088	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	3.731e^-6	0.091	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1235477	2L_1235477_SNP [dm3] 2L_1235477_SNP [dm6]	C	T	4.135e^-6	0.099	INTERGENIC
3R	9366068	3R_9366068_SNP [dm3] 3R_13540346_SNP [dm6]	T	G	4.288e^-6	0.102	INTERGENIC
3L	10377578	3L_10377578_SNP [dm3] 3L_10384478_SNP [dm6]	A	C	4.504e^-6	0.106	INTERGENIC
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	4.941e^-6	0.114	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15458124	2L_15458124_SNP [dm3] 2L_15458124_SNP [dm6]	T	A	5.085e^-6	0.116	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	16062350	2R_16062350_SNP [dm3] 2R_20174845_SNP [dm6]	T	C	5.642e^-6	0.127	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12443070	2R_12443070_SNP [dm3] 2R_16555565_SNP [dm6]	T	A	6.165e^-6	0.137	INTRON Syn2
3L	10377618	3L_10377618_SNP [dm3] 3L_10384518_SNP [dm6]	A	C	6.190e^-6	0.137	INTERGENIC
3R	9366073	3R_9366073_SNP [dm3] 3R_13540351_SNP [dm6]	A	T	6.950e^-6	0.152	INTERGENIC
3R	9380947	3R_9380947_SNP [dm3] 3R_13555225_SNP [dm6]	C	A	7.182e^-6	0.155	INTERGENIC
3L	10377696	3L_10377696_DEL [dm3] 3L_10384596_DEL [dm6]	AA	A	7.344e^-6	0.155	INTERGENIC
3R	9356198	3R_9356198_SNP [dm3] 3R_13530476_SNP [dm6]	T	G	7.419e^-6	0.155	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8515362	2L_8515362_SNP [dm3] 2L_8515362_SNP [dm6]	T	G	7.430e^-6	0.155	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	7.539e^-6	0.155	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	7.796e^-6	0.156	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11812360	3R_11812360_SNP [dm3] 3R_15986638_SNP [dm6]	G	A	7.813e^-6	0.156	UTR_5_PRIME srp EXON CR44133	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9451269	3R_9451269_SNP [dm3] 3R_13625547_SNP [dm6]	C	A	7.842e^-6	0.156	INTERGENIC
2L	8529275	2L_8529275_SNP [dm3] 2L_8529275_SNP [dm6]	A	G	8.058e^-6	0.159	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	1235435	2L_1235435_SNP [dm3] 2L_1235435_SNP [dm6]	C	G	8.176e^-6	0.159	INTERGENIC
2L	15458494	2L_15458494_SNP [dm3] 2L_15458494_SNP [dm6]	G	T	8.257e^-6	0.159	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3505683	2L_3505683_SNP [dm3] 2L_3505683_SNP [dm6]	T	A	8.379e^-6	0.159	INTRON tim	TF binding site BDTNP1_TFBS_twi
3L	10378012	3L_10378012_SNP [dm3] 3L_10384912_SNP [dm6]	A	G	8.386e^-6	0.159	INTERGENIC
X	19194035	X_19194035_SNP [dm3] X_19300002_SNP [dm6]	T	G	8.607e^-6	0.159	INTERGENIC
2L	15458161	2L_15458161_SNP [dm3] 2L_15458161_SNP [dm6]	A	T	8.904e^-6	0.159	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	8.951e^-6	0.159	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	8.951e^-6	0.159	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515266	2L_8515266_SNP [dm3] 2L_8515266_SNP [dm6]	A	G	8.959e^-6	0.159	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	9381408	3R_9381408_SNP [dm3] 3R_13555686_SNP [dm6]	A	T	8.974e^-6	0.159	INTERGENIC
2L	8515314	2L_8515314_SNP [dm3] 2L_8515314_SNP [dm6]	A	C	8.998e^-6	0.159	UPSTREAM CG13097 INTRON PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	4860923	X_4860923_INS [dm3] X_4966890_INS [dm6]	A	AA	9.592e^-6	0.168	INTRON CR44833	regulatory region REDfly_CRMs
2R	13023226	2R_13023226_SNP [dm3] 2R_17135721_SNP [dm6]	A	G	9.745e^-6	0.169	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
2L	8515387	2L_8515387_SNP [dm3] 2L_8515387_SNP [dm6]	C	T	1.051e^-5	0.181	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1235419	2L_1235419_SNP [dm3] 2L_1235419_SNP [dm6]	C	G	1.065e^-5	0.182	INTERGENIC
2L	15458164	2L_15458164_SNP [dm3] 2L_15458164_SNP [dm6]	T	G	1.079e^-5	0.182	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8529270	2L_8529270_SNP [dm3] 2L_8529270_SNP [dm6]	C	A	1.140e^-5	0.189	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8530204	2L_8530204_SNP [dm3] 2L_8530204_SNP [dm6]	A	T	1.141e^-5	0.189	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	9386354	3R_9386354_SNP [dm3] 3R_13560632_SNP [dm6]	T	A	1.196e^-5	0.197	INTERGENIC
2L	12160224	2L_12160224_INS [dm3] 2L_12160224_INS [dm6]	A	AGGATTTTA	1.225e^-5	0.2	INTRON CG31760	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9384908	3R_9384908_SNP [dm3] 3R_13559186_SNP [dm6]	C	A	1.244e^-5	0.201	INTERGENIC
2L	3355038	2L_3355038_SNP [dm3] 2L_3355038_SNP [dm6]	A	T	1.342e^-5	0.215	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	13996704	2R_13996704_SNP [dm3] 2R_18109199_SNP [dm6]	A	T	1.398e^-5	0.222	UPSTREAM CG5756 & 1 other INTERGENIC
2R	13160485	2R_13160485_SNP [dm3] 2R_17272980_SNP [dm6]	T	C	1.408e^-5	0.222	INTRON mbl
2L	1344206	2L_1344206_SNP [dm3] 2L_1344206_SNP [dm6]	A	T	1.455e^-5	0.227	UPSTREAM Cdlc2 & 1 other INTERGENIC
3L	8386486	3L_8386486_SNP [dm3] 3L_8393386_SNP [dm6]	G	C	1.560e^-5	0.242	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	8512026	2L_8512026_SNP [dm3] 2L_8512026_SNP [dm6]	G	A	1.598e^-5	0.242	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	9381472	3R_9381472_DEL [dm3] 3R_13555750_DEL [dm6]	GTAGTGAATACTAA...	G	1.599e^-5	0.242	INTERGENIC
3L	18304679	3L_18304679_SNP [dm3] 3L_18311579_SNP [dm6]	T	A	1.601e^-5	0.242	INTERGENIC
3L	18304678	3L_18304678_SNP [dm3] 3L_18311578_SNP [dm6]	A	G	1.633e^-5	0.245	INTERGENIC
3R	9386358	3R_9386358_SNP [dm3] 3R_13560636_SNP [dm6]	G	A	1.646e^-5	0.245	INTERGENIC
2L	10551530	2L_10551530_SNP [dm3] 2L_10551530_SNP [dm6]	A	G	1.658e^-5	0.245	INTRON Trim9	TF binding site mE1_TFBS_cad
2R	13867788	2R_13867788_SNP [dm3] 2R_17980283_SNP [dm6]	A	T	1.817e^-5	0.264	INTRON dpr13
2R	13867801	2R_13867801_SNP [dm3] 2R_17980296_SNP [dm6]	A	C	1.817e^-5	0.264	INTRON dpr13
3L	18304684	3L_18304684_SNP [dm3] 3L_18311584_SNP [dm6]	A	T	1.967e^-5	0.278	INTERGENIC
2L	8529353	2L_8529353_DEL [dm3] 2L_8529353_DEL [dm6]	ATAAAAA	A	1.978e^-5	0.278	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_prd
3L	2679532	3L_2679532_SNP [dm3] 3L_2679532_SNP [dm6]	G	T	1.983e^-5	0.278	INTRON Fife	TF binding site mE1_TFBS_chinmo
2L	3355028	2L_3355028_SNP [dm3] 2L_3355028_SNP [dm6]	A	G	1.998e^-5	0.278	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3355037	2L_3355037_SNP [dm3] 2L_3355037_SNP [dm6]	C	T	1.998e^-5	0.278	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	2.009e^-5	0.278	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	5004720	X_5004720_SNP [dm3] X_5110687_SNP [dm6]	G	A	2.017e^-5	0.278	INTRON rg & 1 other
2L	3297710	2L_3297710_SNP [dm3] 2L_3297710_SNP [dm6]	C	A	2.027e^-5	0.278	INTRON CG9663
2L	15458230	2L_15458230_SNP [dm3] 2L_15458230_SNP [dm6]	G	C	2.045e^-5	0.278	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11871447	2R_11871447_SNP [dm3] 2R_15983942_SNP [dm6]	T	C	2.087e^-5	0.282	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
3R	25562532	3R_25562532_SNP [dm3] 3R_29736810_SNP [dm6]	G	A	2.124e^-5	0.285	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8446892	2L_8446892_SNP [dm3] 2L_8446892_SNP [dm6]	G	A	2.145e^-5	0.285	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_inv
2L	8523117	2L_8523117_SNP [dm3] 2L_8523117_SNP [dm6]	A	G	2.208e^-5	0.292	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	13861292	2R_13861292_SNP [dm3] 2R_17973787_SNP [dm6]	A	T	2.239e^-5	0.294	INTERGENIC
2L	8531546	2L_8531546_SNP [dm3] 2L_8531546_SNP [dm6]	G	A	2.270e^-5	0.294	INTRON CG17834
2R	17076896	2R_17076896_SNP [dm3] 2R_21189391_SNP [dm6]	T	A	2.285e^-5	0.294	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
2R	12822916	2R_12822916_SNP [dm3] 2R_16935411_SNP [dm6]	G	A	2.304e^-5	0.294	INTRON Pkc53E
2L	8531505	2L_8531505_SNP [dm3] 2L_8531505_SNP [dm6]	A	T	2.306e^-5	0.294	INTRON CG17834
3L	8731213	3L_8731213_SNP [dm3] 3L_8738113_SNP [dm6]	T	G	2.333e^-5	0.295	INTRON Prm	TF binding site mE1_TFBS_cad
3R	9365456	3R_9365456_SNP [dm3] 3R_13539734_SNP [dm6]	G	A	2.356e^-5	0.295	INTERGENIC
3R	9447998	3R_9447998_SNP [dm3] 3R_13622276_SNP [dm6]	C	T	2.357e^-5	0.295	INTERGENIC
2R	13023236	2R_13023236_SNP [dm3] 2R_17135731_SNP [dm6]	T	G	2.434e^-5	0.301	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	2.442e^-5	0.301	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13920139	2R_13920139_SNP [dm3] 2R_18032634_SNP [dm6]	A	G	2.468e^-5	0.301	INTERGENIC
2R	6444653	2R_6444653_SNP [dm3] 2R_10557148_SNP [dm6]	T	C	2.476e^-5	0.301	UPSTREAM psq INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	1344309	2L_1344309_INS [dm3] 2L_1344309_INS [dm6]	G	GTCAGCTAATAAG...	2.499e^-5	0.301	UPSTREAM Cdlc2 & 1 other INTERGENIC
2R	18361239	2R_18361239_SNP [dm3] 2R_22473734_SNP [dm6]	G	A	2.503e^-5	0.301	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9377374	3R_9377374_SNP [dm3] 3R_13551652_SNP [dm6]	T	G	2.524e^-5	0.301	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14008221	2L_14008221_SNP [dm3] 2L_14008221_SNP [dm6]	G	T	2.557e^-5	0.304	NON_SYNONYMOUS_CODING CG42692
2R	15552563	2R_15552563_SNP [dm3] 2R_19665058_SNP [dm6]	A	G	2.627e^-5	0.31	DOWNSTREAM hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
3L	17879223	3L_17879223_SNP [dm3] 3L_17886123_SNP [dm6]	G	T	2.645e^-5	0.31	SYNONYMOUS_CODING CG16775 UPSTREAM CR42548	TF binding site mE1_TFBS_cad
2L	619715	2L_619715_SNP [dm3] 2L_619715_SNP [dm6]	A	T	2.664e^-5	0.31	DOWNSTREAM lectin-21Cb INTERGENIC
3R	3553491	3R_3553491_SNP [dm3] 3R_7727769_SNP [dm6]	C	G	2.703e^-5	0.313	INTERGENIC
2L	8529430	2L_8529430_SNP [dm3] 2L_8529430_SNP [dm6]	T	A	2.762e^-5	0.318	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3R	9447957	3R_9447957_SNP [dm3] 3R_13622235_SNP [dm6]	T	A	2.942e^-5	0.336	INTERGENIC
3L	15745330	3L_15745330_SNP [dm3] 3L_15752230_SNP [dm6]	C	G	3.041e^-5	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9447971	3R_9447971_SNP [dm3] 3R_13622249_SNP [dm6]	G	A	3.088e^-5	0.349	INTERGENIC
2R	17068284	2R_17068284_SNP [dm3] 2R_21180779_SNP [dm6]	C	A	3.130e^-5	0.351	UPSTREAM tRNA:CR33539 INTRON Pu	TF binding site mE1_TFBS_HSA
2L	8531677	2L_8531677_SNP [dm3] 2L_8531677_SNP [dm6]	C	T	3.183e^-5	0.353	INTRON CG17834
3R	9447964	3R_9447964_SNP [dm3] 3R_13622242_SNP [dm6]	T	C	3.193e^-5	0.353	INTERGENIC
2L	3505633	2L_3505633_SNP [dm3] 2L_3505633_SNP [dm6]	T	G	3.202e^-5	0.353	INTRON tim	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	3.224e^-5	0.353	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2L	1344298	2L_1344298_SNP [dm3] 2L_1344298_SNP [dm6]	G	A	3.233e^-5	0.353	UPSTREAM Cdlc2 & 1 other INTERGENIC
3L	16565938	3L_16565938_SNP [dm3] 3L_16572838_SNP [dm6]	T	A	3.297e^-5	0.357	UPSTREAM Mipp1 INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3242625	3L_3242625_SNP [dm3] 3L_3242625_SNP [dm6]	T	C	3.310e^-5	0.357	DOWNSTREAM CG12078 INTERGENIC
2R	15552513	2R_15552513_SNP [dm3] 2R_19665008_SNP [dm6]	T	G	3.359e^-5	0.357	DOWNSTREAM hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
2R	15552574	2R_15552574_SNP [dm3] 2R_19665069_SNP [dm6]	A	G	3.394e^-5	0.357	DOWNSTREAM hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
3L	10377566	3L_10377566_SNP [dm3] 3L_10384466_SNP [dm6]	A	C	3.402e^-5	0.357	INTERGENIC
2L	15458421	2L_15458421_SNP [dm3] 2L_15458421_SNP [dm6]	T	G	3.410e^-5	0.357	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8539867	2L_8539867_SNP [dm3] 2L_8539867_SNP [dm6]	G	A	3.461e^-5	0.357	INTRON CG17834
2R	14765561	2R_14765561_SNP [dm3] 2R_18878056_SNP [dm6]	T	C	3.468e^-5	0.357	UPSTREAM sano INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11870835	2R_11870835_SNP [dm3] 2R_15983330_SNP [dm6]	G	A	3.470e^-5	0.357	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
2R	6055151	2R_6055151_SNP [dm3] 2R_10167646_SNP [dm6]	T	C	3.482e^-5	0.357	INTRON KCNQ
2R	15552520	2R_15552520_INS [dm3] 2R_19665015_INS [dm6]	T	TT	3.484e^-5	0.357	DOWNSTREAM hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
2R	11438928	2R_11438928_SNP [dm3] 2R_15551423_SNP [dm6]	G	C	3.525e^-5	0.359	INTERGENIC
2L	10283240	2L_10283240_SNP [dm3] 2L_10283240_SNP [dm6]	C	G	3.580e^-5	0.361	NON_SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
2L	3127265	2L_3127265_SNP [dm3] 2L_3127265_SNP [dm6]	T	C	3.584e^-5	0.361	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3502470	2L_3502470_SNP [dm3] 2L_3502470_SNP [dm6]	G	C	3.616e^-5	0.363	SYNONYMOUS_CODING tim
3L	2952830	3L_2952830_SNP [dm3] 3L_2952830_SNP [dm6]	A	G	3.686e^-5	0.368	INTRON Shab
2L	16544079	2L_16544079_INS [dm3] 2L_16544079_INS [dm6]	A	AATAA	3.727e^-5	0.37	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1344207	2L_1344207_DEL [dm3] 2L_1344207_DEL [dm6]	AAATATT	A	3.767e^-5	0.372	UPSTREAM Cdlc2 & 1 other INTERGENIC
2R	13867810	2R_13867810_SNP [dm3] 2R_17980305_SNP [dm6]	T	C	3.862e^-5	0.379	INTRON dpr13
3R	26389895	3R_26389895_SNP [dm3] 3R_30564173_SNP [dm6]	T	A	3.912e^-5	0.381	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	8844673	3L_8844673_SNP [dm3] 3L_8851573_SNP [dm6]	G	C	3.940e^-5	0.381	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	8512024	2L_8512024_SNP [dm3] 2L_8512024_SNP [dm6]	T	G	3.941e^-5	0.381	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	3355073	2L_3355073_SNP [dm3] 2L_3355073_SNP [dm6]	G	T	3.968e^-5	0.382	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	9447973	3R_9447973_SNP [dm3] 3R_13622251_SNP [dm6]	G	C	4.077e^-5	0.385	INTERGENIC
3L	10377546	3L_10377546_SNP [dm3] 3L_10384446_SNP [dm6]	A	C	4.085e^-5	0.385	INTERGENIC
2L	3891023	2L_3891023_SNP [dm3] 2L_3891023_SNP [dm6]	T	C	4.089e^-5	0.385	UPSTREAM capu INTRON capu
3R	10422937	3R_10422937_SNP [dm3] 3R_14597215_SNP [dm6]	T	C	4.109e^-5	0.385	INTRON stumps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8529325	2L_8529325_SNP [dm3] 2L_8529325_SNP [dm6]	G	T	4.136e^-5	0.385	START_GAINED CG17834 UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2L	14401756	2L_14401756_SNP [dm3] 2L_14401756_SNP [dm6]	A	G	4.190e^-5	0.385	INTRON elB
2L	8526541	2L_8526541_SNP [dm3] 2L_8526541_SNP [dm6]	T	C	4.247e^-5	0.385	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others	TF binding site mE1_TFBS_cad
3L	10378455	3L_10378455_SNP [dm3] 3L_10385355_SNP [dm6]	A	T	4.252e^-5	0.385	INTERGENIC
3R	9377665	3R_9377665_SNP [dm3] 3R_13551943_SNP [dm6]	G	A	4.254e^-5	0.385	INTERGENIC
3L	9102964	3L_9102964_SNP [dm3] 3L_9109864_SNP [dm6]	G	A	4.279e^-5	0.385	INTRON bol
3R	9382840	3R_9382840_SNP [dm3] 3R_13557118_SNP [dm6]	C	T	4.282e^-5	0.385	INTERGENIC
3R	25614333	3R_25614333_SNP [dm3] 3R_29788611_SNP [dm6]	A	T	4.298e^-5	0.385	UPSTREAM kay INTRON kay
2L	8531363	2L_8531363_SNP [dm3] 2L_8531363_SNP [dm6]	A	T	4.298e^-5	0.385	INTRON CG17834
2L	16543887	2L_16543887_SNP [dm3] 2L_16543887_SNP [dm6]	C	A	4.320e^-5	0.385	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8529492	2L_8529492_SNP [dm3] 2L_8529492_SNP [dm6]	T	A	4.324e^-5	0.385	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3R	20249905	3R_20249905_SNP [dm3] 3R_24424183_SNP [dm6]	G	A	4.362e^-5	0.385	INTRON nAChRalpha1
2L	1245050	2L_1245050_SNP [dm3] 2L_1245050_SNP [dm6]	G	A	4.374e^-5	0.385	INTERGENIC
2L	8533180	2L_8533180_SNP [dm3] 2L_8533180_SNP [dm6]	A	T	4.375e^-5	0.385	INTRON CG17834
3R	9447908	3R_9447908_SNP [dm3] 3R_13622186_SNP [dm6]	G	T	4.392e^-5	0.385	INTERGENIC
2R	13681294	2R_13681294_SNP [dm3] 2R_17793789_SNP [dm6]	T	C	4.480e^-5	0.387	UTR_5_PRIME Dhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25562554	3R_25562554_SNP [dm3] 3R_29736832_SNP [dm6]	G	A	4.506e^-5	0.387	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	15458192	2L_15458192_SNP [dm3] 2L_15458192_SNP [dm6]	C	T	4.515e^-5	0.387	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15458391	2L_15458391_DEL [dm3] 2L_15458391_DEL [dm6]	TTCACCCGCATT...	T	4.515e^-5	0.387	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11264129	2R_11264129_SNP [dm3] 2R_15376624_SNP [dm6]	A	C	4.519e^-5	0.387	UTR_3_PRIME dup UPSTREAM CR43105 & 1 other	TF binding site BDTNP1_TFBS_hb
3R	9411814	3R_9411814_SNP [dm3] 3R_13586092_SNP [dm6]	A	G	4.609e^-5	0.393	INTERGENIC
3R	20508781	3R_20508781_SNP [dm3] 3R_24683059_SNP [dm6]	A	C	4.650e^-5	0.393	INTRON slo
2R	13405958	2R_13405958_SNP [dm3] 2R_17518453_SNP [dm6]	T	G	4.656e^-5	0.393	UPSTREAM APC10 DOWNSTREAM Patronin INTRON CG4866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10378204	3L_10378204_SNP [dm3] 3L_10385104_SNP [dm6]	A	G	4.685e^-5	0.394	INTERGENIC
3R	3698108	3R_3698108_SNP [dm3] 3R_7872386_SNP [dm6]	A	C	4.812e^-5	0.403	INTRON CG17816
3L	13245599	3L_13245599_SNP [dm3] 3L_13252499_SNP [dm6]	G	A	4.840e^-5	0.403	INTRON caps
3R	21429529	3R_21429529_SNP [dm3] 3R_25603807_SNP [dm6]	A	C	4.988e^-5	0.413	UTR_3_PRIME msi INTRON ymp
3R	9447926	3R_9447926_SNP [dm3] 3R_13622204_SNP [dm6]	A	T	5.008e^-5	0.413	INTERGENIC
3R	26390211	3R_26390211_SNP [dm3] 3R_30564489_SNP [dm6]	G	A	5.060e^-5	0.413	INTRON tmod	TF binding site BDTNP1_TFBS_dl
2L	14207062	2L_14207062_SNP [dm3] 2L_14207062_SNP [dm6]	G	C	5.064e^-5	0.413	INTRON Dyrk2
3L	10378486	3L_10378486_SNP [dm3] 3L_10385386_SNP [dm6]	G	A	5.074e^-5	0.413	INTERGENIC
3R	9447941	3R_9447941_DEL [dm3] 3R_13622219_DEL [dm6]	TT	T	5.089e^-5	0.413	INTERGENIC
3L	10378474	3L_10378474_SNP [dm3] 3L_10385374_SNP [dm6]	T	C	5.183e^-5	0.418	INTERGENIC
3L	15742498	3L_15742498_SNP [dm3] 3L_15749398_SNP [dm6]	A	T	5.196e^-5	0.418	DOWNSTREAM CR45240 INTERGENIC
3L	14886079	3L_14886079_SNP [dm3] 3L_14892979_SNP [dm6]	A	G	5.238e^-5	0.42	DOWNSTREAM CG34245 INTERGENIC
3R	9352604	3R_9352604_SNP [dm3] 3R_13526882_SNP [dm6]	C	T	5.367e^-5	0.428	INTERGENIC
3L	3255154	3L_3255154_INS [dm3] 3L_3255154_INS [dm6]	C	CCC	5.391e^-5	0.428	DOWNSTREAM CR43626 INTERGENIC
2R	14762741	2R_14762741_SNP [dm3] 2R_18875236_SNP [dm6]	A	T	5.408e^-5	0.428	INTERGENIC
2R	13184183	2R_13184183_SNP [dm3] 2R_17296678_SNP [dm6]	A	G	5.426e^-5	0.428	INTRON mbl
2L	16544073	2L_16544073_DEL [dm3] 2L_16544073_DEL [dm6]	ATCTGG	A	5.552e^-5	0.435	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	15275114	3L_15275114_SNP [dm3] 3L_15282014_SNP [dm6]	C	G	5.561e^-5	0.435	INTERGENIC
3R	10290315	3R_10290315_SNP [dm3] 3R_14464593_SNP [dm6]	A	C	5.603e^-5	0.436	INTRON cv-c
2R	15659776	2R_15659776_SNP [dm3] 2R_19772271_SNP [dm6]	C	T	5.639e^-5	0.437	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19489485	2R_19489485_SNP [dm3] 2R_23601962_SNP [dm6]	C	T	5.797e^-5	0.445	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	19489489	2R_19489489_SNP [dm3] 2R_23601966_SNP [dm6]	C	T	5.797e^-5	0.445	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	1344292	2L_1344292_SNP [dm3] 2L_1344292_SNP [dm6]	T	G	5.818e^-5	0.445	UPSTREAM Cdlc2 & 1 other INTERGENIC
3L	12186539	3L_12186539_SNP [dm3] 3L_12193439_SNP [dm6]	C	T	5.879e^-5	0.445	SPLICE_SITE_REGION thoc6 DOWNSTREAM Est-P INTRON thoc6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
3R	3757049	3R_3757049_SNP [dm3] 3R_7931327_SNP [dm6]	A	G	5.901e^-5	0.445	UTR_3_PRIME dsx INTRON dsx
3R	9429731	3R_9429731_SNP [dm3] 3R_13604009_SNP [dm6]	C	T	5.952e^-5	0.445	INTERGENIC
2L	8506924	2L_8506924_SNP [dm3] 2L_8506924_SNP [dm6]	G	A	5.989e^-5	0.445	UPSTREAM Dh31 INTERGENIC
2L	8530717	2L_8530717_SNP [dm3] 2L_8530717_SNP [dm6]	A	T	6.016e^-5	0.445	INTRON CG17834
3R	9447931	3R_9447931_SNP [dm3] 3R_13622209_SNP [dm6]	T	C	6.019e^-5	0.445	INTERGENIC
3L	13245600	3L_13245600_SNP [dm3] 3L_13252500_SNP [dm6]	C	T	6.056e^-5	0.445	INTRON caps
3R	9382379	3R_9382379_SNP [dm3] 3R_13556657_SNP [dm6]	T	A	6.062e^-5	0.445	INTERGENIC
2R	18600628	2R_18600628_SNP [dm3] 2R_22713123_SNP [dm6]	C	T	6.069e^-5	0.445	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
2L	20001530	2L_20001530_DEL [dm3] 2L_20001530_DEL [dm6]	ATAGACAA	A	6.082e^-5	0.445	INTRON CG43861
3R	19623204	3R_19623204_SNP [dm3] 3R_23797482_SNP [dm6]	C	T	6.094e^-5	0.445	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad
2L	8511667	2L_8511667_SNP [dm3] 2L_8511667_SNP [dm6]	C	G	6.104e^-5	0.445	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3698102	3R_3698102_SNP [dm3] 3R_7872380_SNP [dm6]	G	A	6.171e^-5	0.447	INTRON CG17816
3L	11060379	3L_11060379_SNP [dm3] 3L_11067279_SNP [dm6]	G	A	6.176e^-5	0.447	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
2R	16172851	2R_16172851_SNP [dm3] 2R_20285346_SNP [dm6]	C	T	6.203e^-5	0.447	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
2R	16172875	2R_16172875_SNP [dm3] 2R_20285370_SNP [dm6]	A	G	6.243e^-5	0.448	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
3R	25662900	3R_25662900_SNP [dm3] 3R_29837178_SNP [dm6]	G	C	6.303e^-5	0.448	NON_SYNONYMOUS_CODING CG15510 UPSTREAM CG42592	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	9316308	2L_9316308_SNP [dm3] 2L_9316308_SNP [dm6]	T	C	6.305e^-5	0.448	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	15404899	2R_15404899_SNP [dm3] 2R_19517394_SNP [dm6]	G	A	6.318e^-5	0.448	DOWNSTREAM sm INTERGENIC
3L	10043838	3L_10043838_SNP [dm3] 3L_10050738_SNP [dm6]	C	T	6.332e^-5	0.448	INTRON dpr6
3L	8742003	3L_8742003_SNP [dm3] 3L_8748903_SNP [dm6]	A	G	6.419e^-5	0.453	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	9396899	3R_9396899_SNP [dm3] 3R_13571177_SNP [dm6]	C	G	6.506e^-5	0.457	INTERGENIC
3R	11980368	3R_11980368_SNP [dm3] 3R_16154646_SNP [dm6]	C	G	6.606e^-5	0.462	UPSTREAM CG6006 INTERGENIC
2L	8512797	2L_8512797_SNP [dm3] 2L_8512797_SNP [dm6]	G	T	6.660e^-5	0.464	UPSTREAM CG13096 INTRON CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9385695	3R_9385695_SNP [dm3] 3R_13559973_SNP [dm6]	T	A	6.740e^-5	0.464	INTERGENIC
2R	11264113	2R_11264113_SNP [dm3] 2R_15376608_SNP [dm6]	G	T	6.743e^-5	0.464	UPSTREAM CR43105 & 1 other DOWNSTREAM dup INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	10704121	2L_10704121_SNP [dm3] 2L_10704121_SNP [dm6]	A	T	6.754e^-5	0.464	INTRON Lip2 & 1 other
X	19737673	X_19737673_SNP [dm3] X_19843640_SNP [dm6]	A	G	6.754e^-5	0.464	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8514725	2L_8514725_SNP [dm3] 2L_8514725_SNP [dm6]	C	T	6.841e^-5	0.467	SYNONYMOUS_CODING CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8241260	3L_8241260_DEL [dm3] 3L_8248160_DEL [dm6]	TCATTA	T	6.850e^-5	0.467	INTRON Dscam4
2R	12578106	2R_12578106_DEL [dm3] 2R_16690601_DEL [dm6]	AA	A	6.928e^-5	0.469	UPSTREAM CG5210 INTRON CG30463
3L	7748099	3L_7748099_SNP [dm3] 3L_7754999_SNP [dm6]	A	T	6.955e^-5	0.469	UTR_3_PRIME CG7409 INTRON CG32373
2R	17076810	2R_17076810_SNP [dm3] 2R_21189305_SNP [dm6]	C	T	6.957e^-5	0.469	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
2L	16243653	2L_16243653_SNP [dm3] 2L_16243653_SNP [dm6]	A	G	7.028e^-5	0.472	NON_SYNONYMOUS_CODING CG42818
2R	18940258	2R_18940258_SNP [dm3] 2R_23052735_SNP [dm6]	C	A	7.069e^-5	0.472	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7263561	3R_7263561_SNP [dm3] 3R_11437839_SNP [dm6]	A	C	7.072e^-5	0.472	UTR_5_PRIME CG17230 UTR_3_PRIME sals DOWNSTREAM CG5281	TF binding site BDTNP1_TFBS_Med
3R	9447912	3R_9447912_SNP [dm3] 3R_13622190_SNP [dm6]	T	A	7.151e^-5	0.476	INTERGENIC
2R	6077599	2R_6077599_SNP [dm3] 2R_10190094_SNP [dm6]	C	T	7.280e^-5	0.48	INTRON KCNQ
2R	8566651	2R_8566651_SNP [dm3] 2R_12679146_SNP [dm6]	C	G	7.286e^-5	0.48	DOWNSTREAM CG8771 INTRON CG42708	TF binding site mE1_TFBS_Trl
2R	19398584	2R_19398584_SNP [dm3] 2R_23511061_SNP [dm6]	A	G	7.294e^-5	0.48	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
3L	14189540	3L_14189540_SNP [dm3] 3L_14196440_SNP [dm6]	T	C	7.506e^-5	0.492	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19489507	2R_19489507_SNP [dm3] 2R_23601984_SNP [dm6]	T	C	7.534e^-5	0.492	UTR_3_PRIME CG43209 UPSTREAM IM18 & 2 others	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	14768472	2R_14768472_SNP [dm3] 2R_18880967_SNP [dm6]	G	A	7.639e^-5	0.496	INTRON sano
3L	4142796	3L_4142796_SNP [dm3] 3L_4142796_SNP [dm6]	C	T	7.678e^-5	0.496	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3L	4142801	3L_4142801_SNP [dm3] 3L_4142801_SNP [dm6]	G	A	7.678e^-5	0.496	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3R	26105331	3R_26105331_SNP [dm3] 3R_30279609_SNP [dm6]	T	C	7.697e^-5	0.496	SYNONYMOUS_CODING hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6077523	2R_6077523_SNP [dm3] 2R_10190018_SNP [dm6]	A	G	7.811e^-5	0.502	INTRON KCNQ
2R	13551510	2R_13551510_SNP [dm3] 2R_17664005_SNP [dm6]	C	T	7.974e^-5	0.506	INTRON CCHa1-R
2L	1238948	2L_1238948_SNP [dm3] 2L_1238948_SNP [dm6]	A	C	7.980e^-5	0.506	INTERGENIC
2L	1344291	2L_1344291_SNP [dm3] 2L_1344291_SNP [dm6]	A	C	7.982e^-5	0.506	UPSTREAM Cdlc2 & 1 other INTERGENIC
3R	9362235	3R_9362235_SNP [dm3] 3R_13536513_SNP [dm6]	T	C	7.987e^-5	0.506	INTERGENIC
2R	13549434	2R_13549434_SNP [dm3] 2R_17661929_SNP [dm6]	T	C	8.014e^-5	0.506	INTRON CCHa1-R
3R	17399650	3R_17399650_SNP [dm3] 3R_21573928_SNP [dm6]	T	C	8.063e^-5	0.506	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14189444	3L_14189444_SNP [dm3] 3L_14196344_SNP [dm6]	A	G	8.086e^-5	0.506	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	15997851	3R_15997851_SNP [dm3] 3R_20172129_SNP [dm6]	T	C	8.114e^-5	0.506	INTRON CG5023
2L	8541841	2L_8541841_SNP [dm3] 2L_8541841_SNP [dm6]	A	G	8.136e^-5	0.506	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	24243587	3L_24243587_INS [dm3] 3L_24250487_INS [dm6]	T	TTCCGCACAAATTTAGAATT...	8.216e^-5	0.506	INTRON Snap25
2R	14395559	2R_14395559_SNP [dm3] 2R_18508054_SNP [dm6]	A	T	8.232e^-5	0.506	INTERGENIC
3L	4578969	3L_4578969_SNP [dm3] 3L_4578969_SNP [dm6]	T	C	8.232e^-5	0.506	INTRON CG42540
3R	25856125	3R_25856125_SNP [dm3] 3R_30030403_SNP [dm6]	T	A	8.248e^-5	0.506	INTRON Axn	TF binding site BDTNP1_TFBS_dl
3R	14596752	3R_14596752_SNP [dm3] 3R_18771030_SNP [dm6]	G	A	8.286e^-5	0.506	INTRON CG7720
3R	11291926	3R_11291926_SNP [dm3] 3R_15466204_SNP [dm6]	C	G	8.292e^-5	0.506	INTRON AdamTS-A
2L	3887036	2L_3887036_SNP [dm3] 2L_3887036_SNP [dm6]	G	T	8.305e^-5	0.506	SYNONYMOUS_CODING capu INTRON capu
2R	17076809	2R_17076809_SNP [dm3] 2R_21189304_SNP [dm6]	G	C	8.344e^-5	0.506	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
2R	16872367	2R_16872367_SNP [dm3] 2R_20984862_SNP [dm6]	G	A	8.409e^-5	0.508	SYNONYMOUS_CODING CG15651 DOWNSTREAM CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15457689	2L_15457689_SNP [dm3] 2L_15457689_SNP [dm6]	T	C	8.430e^-5	0.508	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	23673628	3R_23673628_SNP [dm3] 3R_27847906_SNP [dm6]	C	T	8.484e^-5	0.51	DOWNSTREAM Or98a INTRON CG34353
3L	10377660	3L_10377660_SNP [dm3] 3L_10384560_SNP [dm6]	C	G	8.503e^-5	0.51	INTERGENIC
2L	8533835	2L_8533835_SNP [dm3] 2L_8533835_SNP [dm6]	G	C	8.530e^-5	0.51	INTRON CG17834	TF binding site mE1_TFBS_cad
2R	16161045	2R_16161045_SNP [dm3] 2R_20273540_SNP [dm6]	G	A	8.620e^-5	0.512	SYNONYMOUS_CODING CG10444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8844674	3L_8844674_SNP [dm3] 3L_8851574_SNP [dm6]	A	G	8.620e^-5	0.512	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	9395552	3R_9395552_SNP [dm3] 3R_13569830_SNP [dm6]	G	T	8.664e^-5	0.512	INTERGENIC
3R	9412479	3R_9412479_SNP [dm3] 3R_13586757_SNP [dm6]	C	A	8.687e^-5	0.512	INTERGENIC
3L	8956651	3L_8956651_SNP [dm3] 3L_8963551_SNP [dm6]	C	T	8.726e^-5	0.513	SYNONYMOUS_CODING CG5660	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13112945	3L_13112945_SNP [dm3] 3L_13119845_SNP [dm6]	A	T	8.746e^-5	0.513	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	9383032	3R_9383032_SNP [dm3] 3R_13557310_SNP [dm6]	G	A	8.849e^-5	0.517	INTERGENIC
3L	18304732	3L_18304732_SNP [dm3] 3L_18311632_SNP [dm6]	A	G	8.928e^-5	0.518	INTERGENIC
2L	16543938	2L_16543938_SNP [dm3] 2L_16543938_SNP [dm6]	A	G	8.932e^-5	0.518	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	9407064	3R_9407064_SNP [dm3] 3R_13581342_SNP [dm6]	C	T	8.944e^-5	0.518	INTERGENIC
2R	12523322	2R_12523322_SNP [dm3] 2R_16635817_SNP [dm6]	C	T	9.007e^-5	0.518	INTRON Alk	TF binding site BDTNP1_TFBS_dl
3R	9880276	3R_9880276_SNP [dm3] 3R_14054554_SNP [dm6]	T	C	9.027e^-5	0.518	INTERGENIC
3R	11284903	3R_11284903_DEL [dm3] 3R_15459181_DEL [dm6]	ATA	A	9.031e^-5	0.518	INTRON AdamTS-A
X	12201005	X_12201005_DEL [dm3] X_12306972_DEL [dm6]	CCCCTTAGTTTTC...	C	9.112e^-5	0.521	INTRON Ten-a
3R	9447928	3R_9447928_SNP [dm3] 3R_13622206_SNP [dm6]	T	C	9.239e^-5	0.527	INTERGENIC
2L	10939518	2L_10939518_SNP [dm3] 2L_10939518_SNP [dm6]	A	G	9.265e^-5	0.527	INTRON dpr2
3R	9366022	3R_9366022_SNP [dm3] 3R_13540300_SNP [dm6]	A	G	9.324e^-5	0.527	INTERGENIC
2L	8529328	2L_8529328_SNP [dm3] 2L_8529328_SNP [dm6]	G	A	9.358e^-5	0.527	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
3L	2686057	3L_2686057_SNP [dm3] 3L_2686057_SNP [dm6]	A	G	9.374e^-5	0.527	INTRON Fife
3R	23558599	3R_23558599_SNP [dm3] 3R_27732877_SNP [dm6]	A	G	9.391e^-5	0.527	INTERGENIC
2L	3791180	2L_3791180_SNP [dm3] 2L_3791180_SNP [dm6]	T	C	9.468e^-5	0.53	INTRON CG3921
2R	15768682	2R_15768682_SNP [dm3] 2R_19881177_SNP [dm6]	T	G	9.519e^-5	0.53	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	18304738	3L_18304738_SNP [dm3] 3L_18311638_SNP [dm6]	A	G	9.528e^-5	0.53	INTERGENIC
2L	8531131	2L_8531131_SNP [dm3] 2L_8531131_SNP [dm6]	C	A	9.543e^-5	0.53	INTRON CG17834
3L	10378565	3L_10378565_SNP [dm3] 3L_10385465_SNP [dm6]	G	A	9.584e^-5	0.53	UPSTREAM CR45245 INTERGENIC
2L	1247893	2L_1247893_SNP [dm3] 2L_1247893_SNP [dm6]	A	T	9.629e^-5	0.53	INTERGENIC
X	11554952	X_11554952_DEL [dm3] X_11660919_DEL [dm6]	CTTTATTATGTGTATTTCGA...	C	9.636e^-5	0.53	INTRON Ptp10D
2R	6444700	2R_6444700_SNP [dm3] 2R_10557195_SNP [dm6]	T	G	9.752e^-5	0.53	UPSTREAM psq INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	16473543	2L_16473543_SNP [dm3] 2L_16473543_SNP [dm6]	G	A	9.768e^-5	0.53	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad
3L	8241269	3L_8241269_SNP [dm3] 3L_8248169_SNP [dm6]	C	A	9.779e^-5	0.53	INTRON Dscam4
3R	23266448	3R_23266448_SNP [dm3] 3R_27440726_SNP [dm6]	A	C	9.797e^-5	0.53	UTR_3_PRIME CG43447 INTRON CG44290	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	7910248	X_7910248_SNP [dm3] X_8016215_SNP [dm6]	A	G	9.813e^-5	0.53	INTRON Tbh
3R	9447924	3R_9447924_SNP [dm3] 3R_13622202_SNP [dm6]	T	C	9.850e^-5	0.53	INTERGENIC
2L	3499286	2L_3499286_SNP [dm3] 2L_3499286_SNP [dm6]	G	A	9.851e^-5	0.53	INTRON tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	14008210	2L_14008210_SNP [dm3] 2L_14008210_SNP [dm6]	A	G	9.861e^-5	0.53	NON_SYNONYMOUS_CODING CG42692
2L	8534539	2L_8534539_SNP [dm3] 2L_8534539_SNP [dm6]	G	A	9.881e^-5	0.53	INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	10377628	3L_10377628_SNP [dm3] 3L_10384528_SNP [dm6]	G	A	9.927e^-5	0.53	INTERGENIC
2L	8534548	2L_8534548_SNP [dm3] 2L_8534548_SNP [dm6]	C	A	9.978e^-5	0.532	INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	13042890	2R_13042890_SNP [dm3] 2R_17155385_SNP [dm6]	C	T	1.006e^-4	0.533	UTR_3_PRIME CG17290 DOWNSTREAM CG17290
3L	1604282	3L_1604282_SNP [dm3] 3L_1604282_SNP [dm6]	C	T	1.006e^-4	0.533	SYNONYMOUS_CODING CG18170 START_GAINED CG33791 UTR_5_PRIME CG33791 UPSTREAM CG33791
3R	9377279	3R_9377279_SNP [dm3] 3R_13551557_SNP [dm6]	T	G	1.009e^-4	0.533	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	16000760	2R_16000760_SNP [dm3] 2R_20113255_SNP [dm6]	C	G	1.013e^-4	0.533	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8844678	3L_8844678_INS [dm3] 3L_8851578_INS [dm6]	G	GG	1.015e^-4	0.533	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	6825233	3L_6825233_INS [dm3] 3L_6832133_INS [dm6]	G	GTTTTACTGTG...	1.033e^-4	0.54	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15552504	2R_15552504_SNP [dm3] 2R_19664999_SNP [dm6]	A	T	1.034e^-4	0.54	DOWNSTREAM hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
3R	9381546	3R_9381546_DEL [dm3] 3R_13555824_DEL [dm6]	TT	T	1.047e^-4	0.545	INTERGENIC
2R	18081863	2R_18081863_SNP [dm3] 2R_22194358_SNP [dm6]	G	A	1.049e^-4	0.545	INTRON Swim
2R	13549424	2R_13549424_DEL [dm3] 2R_17661919_DEL [dm6]	ACAATA	A	1.056e^-4	0.546	INTRON CCHa1-R
3L	10378489	3L_10378489_SNP [dm3] 3L_10385389_SNP [dm6]	C	A	1.058e^-4	0.546	INTERGENIC
2L	3502402	2L_3502402_SNP [dm3] 2L_3502402_SNP [dm6]	C	T	1.061e^-4	0.546	INTRON tim
3L	15275244	3L_15275244_SNP [dm3] 3L_15282144_SNP [dm6]	C	T	1.063e^-4	0.546	INTERGENIC
2R	14759254	2R_14759254_SNP [dm3] 2R_18871749_SNP [dm6]	C	G	1.069e^-4	0.548	INTERGENIC
3L	10377711	3L_10377711_SNP [dm3] 3L_10384611_SNP [dm6]	T	C	1.074e^-4	0.549	INTERGENIC
3R	9377351	3R_9377351_SNP [dm3] 3R_13551629_SNP [dm6]	T	G	1.083e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2891446	3L_2891446_DEL [dm3] 3L_2891446_DEL [dm6]	AG	A	1.088e^-4	0.55	INTRON spz5
3R	14103134	3R_14103134_SNP [dm3] 3R_18277412_SNP [dm6]	G	A	1.089e^-4	0.55	DOWNSTREAM CG7142 INTRON eIF-1A
2R	12523324	2R_12523324_SNP [dm3] 2R_16635819_SNP [dm6]	A	C	1.091e^-4	0.55	INTRON Alk	TF binding site BDTNP1_TFBS_dl
2L	15454552	2L_15454552_SNP [dm3] 2L_15454552_SNP [dm6]	A	G	1.093e^-4	0.55	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23557675	3R_23557675_SNP [dm3] 3R_27731953_SNP [dm6]	T	C	1.094e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9384889	3R_9384889_INS [dm3] 3R_13559167_INS [dm6]	A	AA	1.097e^-4	0.55	INTERGENIC
3R	14098853	3R_14098853_SNP [dm3] 3R_18273131_SNP [dm6]	A	T	1.102e^-4	0.551	INTRON Vps39	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15997885	3R_15997885_DEL [dm3] 3R_20172163_DEL [dm6]	CC	C	1.110e^-4	0.553	INTRON CG5023
X	5828943	X_5828943_SNP [dm3] X_5934910_SNP [dm6]	T	C	1.111e^-4	0.553	INTRON CG3726
3R	9374679	3R_9374679_DEL [dm3] 3R_13548957_DEL [dm6]	CC	C	1.121e^-4	0.554	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9447917	3R_9447917_INS [dm3] 3R_13622195_INS [dm6]	T	TC	1.121e^-4	0.554	INTERGENIC
3R	9372645	3R_9372645_SNP [dm3] 3R_13546923_SNP [dm6]	G	C	1.127e^-4	0.554	INTERGENIC
2L	7305106	2L_7305106_SNP [dm3] 2L_7305106_SNP [dm6]	G	A	1.128e^-4	0.554	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13773408	3R_13773408_SNP [dm3] 3R_17947686_SNP [dm6]	T	C	1.129e^-4	0.554	INTRON cpo
2L	18665039	2L_18665039_DEL [dm3] 2L_18665039_DEL [dm6]	GCAAGCGACA	G	1.134e^-4	0.555	UPSTREAM CR42490 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18304764	3L_18304764_SNP [dm3] 3L_18311664_SNP [dm6]	C	A	1.144e^-4	0.559	INTERGENIC
2L	10113760	2L_10113760_SNP [dm3] 2L_10113760_SNP [dm6]	G	A	1.156e^-4	0.561	INTRON CG44153 & 1 other
3L	4476486	3L_4476486_SNP [dm3] 3L_4476486_SNP [dm6]	A	T	1.157e^-4	0.561	INTERGENIC
2L	7002408	2L_7002408_SNP [dm3] 2L_7002408_SNP [dm6]	G	A	1.158e^-4	0.561	INTRON uif
2R	18600622	2R_18600622_SNP [dm3] 2R_22713117_SNP [dm6]	T	C	1.166e^-4	0.562	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
3R	23263348	3R_23263348_SNP [dm3] 3R_27437626_SNP [dm6]	C	G	1.168e^-4	0.562	UPSTREAM side INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8885068	2L_8885068_SNP [dm3] 2L_8885068_SNP [dm6]	G	A	1.170e^-4	0.562	INTERGENIC
3L	8742474	3L_8742474_SNP [dm3] 3L_8749374_SNP [dm6]	T	C	1.172e^-4	0.562	SYNONYMOUS_CODING CG13306	TF binding site mE1_TFBS_bab1
3R	15478423	3R_15478423_SNP [dm3] 3R_19652701_SNP [dm6]	A	G	1.176e^-4	0.562	SYNONYMOUS_CODING CG6184 DOWNSTREAM CG31219	TF binding site mE1_TFBS_chinmo
2L	8545652	2L_8545652_SNP [dm3] 2L_8545652_SNP [dm6]	A	G	1.179e^-4	0.562	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_Kr
2R	13409006	2R_13409006_SNP [dm3] 2R_17521501_SNP [dm6]	G	A	1.180e^-4	0.562	INTRON Patronin
3R	7768629	3R_7768629_SNP [dm3] 3R_11942907_SNP [dm6]	C	T	1.190e^-4	0.564	INTRON Cad87A
2L	14905769	2L_14905769_SNP [dm3] 2L_14905769_SNP [dm6]	G	A	1.192e^-4	0.564	INTERGENIC
3R	9785485	3R_9785485_SNP [dm3] 3R_13959763_SNP [dm6]	T	C	1.205e^-4	0.565	SYNONYMOUS_CODING Ipp DOWNSTREAM CG9925
3L	13107418	3L_13107418_SNP [dm3] 3L_13114318_SNP [dm6]	G	T	1.206e^-4	0.565	UTR_5_PRIME trn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	14219961	2R_14219961_SNP [dm3] 2R_18332456_SNP [dm6]	T	C	1.208e^-4	0.565	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	14905688	2L_14905688_SNP [dm3] 2L_14905688_SNP [dm6]	G	C	1.208e^-4	0.565	INTERGENIC
2R	13097276	2R_13097276_SNP [dm3] 2R_17209771_SNP [dm6]	A	G	1.209e^-4	0.565	INTERGENIC
3R	3851033	3R_3851033_SNP [dm3] 3R_8025311_SNP [dm6]	A	G	1.214e^-4	0.566	INTRON CG2747
2R	13160227	2R_13160227_SNP [dm3] 2R_17272722_SNP [dm6]	G	A	1.216e^-4	0.566	INTRON mbl
2L	1218435	2L_1218435_INS [dm3] 2L_1218435_INS [dm6]	T	TG	1.221e^-4	0.566	UPSTREAM CR43263 & 1 other INTERGENIC
2R	12304610	2R_12304610_SNP [dm3] 2R_16417105_SNP [dm6]	A	T	1.225e^-4	0.566	UTR_5_PRIME Menl-2 UTR_3_PRIME Menl-1 INTRON Sema-2b
2L	14187174	2L_14187174_SNP [dm3] 2L_14187174_SNP [dm6]	G	A	1.225e^-4	0.566	INTRON Dyrk2	TF binding site mE1_TFBS_cad
2R	13184459	2R_13184459_SNP [dm3] 2R_17296954_SNP [dm6]	G	C	1.229e^-4	0.567	INTRON mbl
3R	9483294	3R_9483294_SNP [dm3] 3R_13657572_SNP [dm6]	A	T	1.237e^-4	0.567	UTR_3_PRIME Hrb87F DOWNSTREAM Hrb87F INTRON Hrb87F
2R	17074632	2R_17074632_SNP [dm3] 2R_21187127_SNP [dm6]	C	A	1.237e^-4	0.567	SYNONYMOUS_CODING tud
3R	19118687	3R_19118687_SNP [dm3] 3R_23292965_SNP [dm6]	G	A	1.250e^-4	0.572	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11264106	2R_11264106_SNP [dm3] 2R_15376601_SNP [dm6]	T	C	1.256e^-4	0.573	UPSTREAM CR43105 & 1 other DOWNSTREAM dup INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	9363837	3R_9363837_SNP [dm3] 3R_13538115_SNP [dm6]	C	G	1.269e^-4	0.576	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	10378453	3L_10378453_SNP [dm3] 3L_10385353_SNP [dm6]	T	A	1.269e^-4	0.576	INTERGENIC
2L	7002288	2L_7002288_SNP [dm3] 2L_7002288_SNP [dm6]	G	A	1.273e^-4	0.576	INTRON uif
3R	15480277	3R_15480277_SNP [dm3] 3R_19654555_SNP [dm6]	T	C	1.274e^-4	0.576	SYNONYMOUS_CODING CG6184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26086315	3R_26086315_SNP [dm3] 3R_30260593_SNP [dm6]	C	T	1.283e^-4	0.578	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	9405205	3R_9405205_SNP [dm3] 3R_13579483_SNP [dm6]	G	A	1.289e^-4	0.58	INTERGENIC
2L	8884999	2L_8884999_SNP [dm3] 2L_8884999_SNP [dm6]	C	T	1.299e^-4	0.583	INTERGENIC
2L	3889915	2L_3889915_SNP [dm3] 2L_3889915_SNP [dm6]	T	C	1.309e^-4	0.584	UTR_5_PRIME capu INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3R	9411883	3R_9411883_SNP [dm3] 3R_13586161_SNP [dm6]	G	A	1.314e^-4	0.584	INTERGENIC
3R	13466615	3R_13466615_SNP [dm3] 3R_17640893_SNP [dm6]	T	A	1.316e^-4	0.584	INTRON CG43175
3L	5688496	3L_5688496_SNP [dm3] 3L_5695396_SNP [dm6]	C	T	1.317e^-4	0.584	INTRON sif
2L	6695943	2L_6695943_SNP [dm3] 2L_6695943_SNP [dm6]	G	A	1.319e^-4	0.584	INTRON Tsp
2L	10300891	2L_10300891_SNP [dm3] 2L_10300891_SNP [dm6]	A	G	1.321e^-4	0.584	SYNONYMOUS_CODING CG13138	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9720438	3L_9720438_DEL [dm3] 3L_9727338_DEL [dm6]	TACGAAT	T	1.332e^-4	0.587	UTR_5_PRIME Naa60 DOWNSTREAM defl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10441695	2L_10441695_SNP [dm3] 2L_10441695_SNP [dm6]	G	A	1.336e^-4	0.587	UPSTREAM loh DOWNSTREAM CR45375 & 1 other INTERGENIC
2L	10441696	2L_10441696_SNP [dm3] 2L_10441696_SNP [dm6]	G	C	1.336e^-4	0.587	UPSTREAM loh DOWNSTREAM CR45375 & 1 other INTERGENIC
2R	14784794	2R_14784794_SNP [dm3] 2R_18897289_SNP [dm6]	A	C	1.349e^-4	0.591	INTRON sano
3R	9412448	3R_9412448_SNP [dm3] 3R_13586726_SNP [dm6]	T	C	1.367e^-4	0.598	INTERGENIC
3R	25562591	3R_25562591_SNP [dm3] 3R_29736869_SNP [dm6]	A	G	1.371e^-4	0.598	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8539826	2L_8539826_SNP [dm3] 2L_8539826_SNP [dm6]	T	G	1.386e^-4	0.602	INTRON CG17834
3L	12080574	3L_12080574_SNP [dm3] 3L_12087474_SNP [dm6]	T	G	1.387e^-4	0.602	INTERGENIC
3R	26389923	3R_26389923_SNP [dm3] 3R_30564201_SNP [dm6]	C	G	1.395e^-4	0.604	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	17092373	2L_17092373_SNP [dm3] 2L_17092373_SNP [dm6]	C	T	1.405e^-4	0.606	INTERGENIC
2L	8884285	2L_8884285_SNP [dm3] 2L_8884285_SNP [dm6]	T	A	1.407e^-4	0.606	INTERGENIC
X	10853509	X_10853509_SNP [dm3] X_10959476_SNP [dm6]	G	T	1.409e^-4	0.606	INTRON Myo10A
2L	8508450	2L_8508450_SNP [dm3] 2L_8508450_SNP [dm6]	A	C	1.414e^-4	0.607	DOWNSTREAM CG13096 INTERGENIC
2R	15690713	2R_15690713_SNP [dm3] 2R_19803208_SNP [dm6]	C	G	1.420e^-4	0.607	DOWNSTREAM tRNA:K2:56EF INTERGENIC
2L	10032454	2L_10032454_SNP [dm3] 2L_10032454_SNP [dm6]	G	A	1.432e^-4	0.607	UPSTREAM obst-B INTERGENIC	TF binding site mE1_TFBS_Trl
3R	15997969	3R_15997969_SNP [dm3] 3R_20172247_SNP [dm6]	T	A	1.434e^-4	0.607	INTRON CG5023
2L	1006241	2L_1006241_SNP [dm3] 2L_1006241_SNP [dm6]	T	C	1.436e^-4	0.607	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	16693693	2R_16693693_DEL [dm3] 2R_20806188_DEL [dm6]	TAA	T	1.437e^-4	0.607	INTERGENIC
2L	15434918	2L_15434918_SNP [dm3] 2L_15434918_SNP [dm6]	A	G	1.437e^-4	0.607	UTR_3_PRIME CG4161 UPSTREAM CR44861
3L	9337128	3L_9337128_SNP [dm3] 3L_9344028_SNP [dm6]	A	C	1.451e^-4	0.607	UPSTREAM PGRP-LC INTRON PGRP-LC
3R	26751873	3R_26751873_SNP [dm3] 3R_30926151_SNP [dm6]	C	T	1.456e^-4	0.607	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
2L	14905746	2L_14905746_SNP [dm3] 2L_14905746_SNP [dm6]	T	A	1.457e^-4	0.607	INTERGENIC
3L	2552751	3L_2552751_SNP [dm3] 3L_2552751_SNP [dm6]	A	T	1.461e^-4	0.607	INTRON Spn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	25676438	3R_25676438_SNP [dm3] 3R_29850716_SNP [dm6]	T	G	1.461e^-4	0.607	SYNONYMOUS_CODING Cad99C	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3297809	2L_3297809_SNP [dm3] 2L_3297809_SNP [dm6]	T	C	1.464e^-4	0.607	INTRON CG9663
2R	14762835	2R_14762835_SNP [dm3] 2R_18875330_SNP [dm6]	T	A	1.470e^-4	0.607	INTERGENIC
3R	3838102	3R_3838102_SNP [dm3] 3R_8012380_SNP [dm6]	C	G	1.474e^-4	0.607	NON_SYNONYMOUS_CODING CG10435	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
X	5532992	X_5532992_SNP [dm3] X_5638959_SNP [dm6]	T	C	1.476e^-4	0.607	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9411861	3R_9411861_SNP [dm3] 3R_13586139_SNP [dm6]	C	G	1.476e^-4	0.607	INTERGENIC
3L	1253848	3L_1253848_SNP [dm3] 3L_1253848_SNP [dm6]	T	A	1.476e^-4	0.607	UPSTREAM CG9133 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17230378	2L_17230378_SNP [dm3] 2L_17230378_SNP [dm6]	T	G	1.478e^-4	0.607	INTRON beat-IIIc
2R	17368897	2R_17368897_SNP [dm3] 2R_21481392_SNP [dm6]	C	T	1.479e^-4	0.607	UPSTREAM Sara & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	19737942	X_19737942_SNP [dm3] X_19843909_SNP [dm6]	A	G	1.480e^-4	0.607	INTRON pico	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	3920733	3L_3920733_SNP [dm3] 3L_3920733_SNP [dm6]	G	T	1.487e^-4	0.609	INTRON Eip63F-1
3R	10307783	3R_10307783_SNP [dm3] 3R_14482061_SNP [dm6]	G	A	1.499e^-4	0.61	UPSTREAM cv-c INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20145229	2R_20145229_SNP [dm3] 2R_24257706_SNP [dm6]	G	A	1.506e^-4	0.61	UPSTREAM CG3376 DOWNSTREAM CG13575 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	25563247	3R_25563247_SNP [dm3] 3R_29737525_SNP [dm6]	T	C	1.508e^-4	0.61	UPSTREAM CG7601 & 1 other INTRON CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	2610004	3L_2610004_SNP [dm3] 3L_2610004_SNP [dm6]	C	T	1.511e^-4	0.61	UTR_3_PRIME Pxn INTRON Pxn
3L	12103840	3L_12103840_DEL [dm3] 3L_12110740_DEL [dm6]	TA	T	1.512e^-4	0.61	INTERGENIC
3L	16581485	3L_16581485_SNP [dm3] 3L_16588385_SNP [dm6]	G	A	1.520e^-4	0.61	UPSTREAM l_3_73Ah DOWNSTREAM CG32163 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	9731608	2L_9731608_SNP [dm3] 2L_9731608_SNP [dm6]	G	A	1.520e^-4	0.61	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5022205	3L_5022205_SNP [dm3] 3L_5022205_SNP [dm6]	G	A	1.522e^-4	0.61	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14189363	3L_14189363_SNP [dm3] 3L_14196263_SNP [dm6]	C	A	1.526e^-4	0.61	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	13184610	2R_13184610_SNP [dm3] 2R_17297105_SNP [dm6]	A	C	1.527e^-4	0.61	INTRON mbl
2L	8548039	2L_8548039_SNP [dm3] 2L_8548039_SNP [dm6]	A	C	1.528e^-4	0.61	INTRON Sema-1a
2L	14401713	2L_14401713_SNP [dm3] 2L_14401713_SNP [dm6]	G	A	1.533e^-4	0.61	INTRON elB
3R	9411862	3R_9411862_SNP [dm3] 3R_13586140_SNP [dm6]	T	A	1.540e^-4	0.61	INTERGENIC
3R	25614334	3R_25614334_SNP [dm3] 3R_29788612_SNP [dm6]	A	G	1.542e^-4	0.61	UPSTREAM kay INTRON kay
2L	8531671	2L_8531671_SNP [dm3] 2L_8531671_SNP [dm6]	A	T	1.546e^-4	0.61	INTRON CG17834
3L	4104373	3L_4104373_SNP [dm3] 3L_4104373_SNP [dm6]	C	T	1.550e^-4	0.61	SYNONYMOUS_CODING Fit1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	19215970	2L_19215970_SNP [dm3] 2L_19215970_SNP [dm6]	G	C	1.551e^-4	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18304772	3L_18304772_SNP [dm3] 3L_18311672_SNP [dm6]	T	A	1.554e^-4	0.61	INTERGENIC
3R	9370816	3R_9370816_SNP [dm3] 3R_13545094_SNP [dm6]	T	A	1.554e^-4	0.61	INTRON CG31337
3R	7263319	3R_7263319_SNP [dm3] 3R_11437597_SNP [dm6]	A	G	1.557e^-4	0.61	UTR_3_PRIME sals UPSTREAM CG17230 DOWNSTREAM CG5281	TF binding site BDTNP1_TFBS_Med
3R	13765223	3R_13765223_SNP [dm3] 3R_17939501_SNP [dm6]	C	T	1.565e^-4	0.61	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11979925	3R_11979925_SNP [dm3] 3R_16154203_SNP [dm6]	T	C	1.570e^-4	0.61	UPSTREAM CG6006 INTERGENIC
3R	9371155	3R_9371155_SNP [dm3] 3R_13545433_SNP [dm6]	T	A	1.570e^-4	0.61	UPSTREAM CG31337 INTERGENIC
2L	12385825	2L_12385825_SNP [dm3] 2L_12385825_SNP [dm6]	T	G	1.574e^-4	0.61	INTRON bru-2
3R	18092216	3R_18092216_SNP [dm3] 3R_22266494_SNP [dm6]	T	C	1.582e^-4	0.61	INTRON SKIP
3R	9395985	3R_9395985_SNP [dm3] 3R_13570263_SNP [dm6]	G	A	1.584e^-4	0.61	INTERGENIC
3L	3920676	3L_3920676_SNP [dm3] 3L_3920676_SNP [dm6]	G	A	1.585e^-4	0.61	INTRON Eip63F-1
2L	1228294	2L_1228294_SNP [dm3] 2L_1228294_SNP [dm6]	C	A	1.585e^-4	0.61	SYNONYMOUS_CODING CG42329
3R	15582957	3R_15582957_SNP [dm3] 3R_19757235_SNP [dm6]	G	A	1.588e^-4	0.61	INTRON GluClalpha
3L	8742769	3L_8742769_SNP [dm3] 3L_8749669_SNP [dm6]	C	A	1.593e^-4	0.61	UTR_5_PRIME CG13306	TF binding site mE1_TFBS_bab1
3R	3818137	3R_3818137_SNP [dm3] 3R_7992415_SNP [dm6]	G	C	1.594e^-4	0.61	INTRON CG2781
3L	4107164	3L_4107164_SNP [dm3] 3L_4107164_SNP [dm6]	T	C	1.595e^-4	0.61	DOWNSTREAM Fit1 EXON CR45670
2L	3297726	2L_3297726_SNP [dm3] 2L_3297726_SNP [dm6]	C	T	1.615e^-4	0.617	INTRON CG9663
2R	18760302	2R_18760302_SNP [dm3] 2R_22872779_SNP [dm6]	A	G	1.623e^-4	0.617	INTRON CG13532	TF binding site mE1_TFBS_chinmo
2R	12565484	2R_12565484_SNP [dm3] 2R_16677979_SNP [dm6]	T	C	1.625e^-4	0.617	INTRON CG30463
3R	9456879	3R_9456879_SNP [dm3] 3R_13631157_SNP [dm6]	G	C	1.626e^-4	0.617	UPSTREAM CG10841 EXON CR45594	TF binding site BDTNP1_TFBS_sna
2L	14008206	2L_14008206_SNP [dm3] 2L_14008206_SNP [dm6]	G	A	1.629e^-4	0.617	SYNONYMOUS_CODING CG42692
2L	16110772	2L_16110772_INS [dm3] 2L_16110772_INS [dm6]	TG	ATATATATTATAT...	1.642e^-4	0.62	INTERGENIC
2L	7304674	2L_7304674_SNP [dm3] 2L_7304674_SNP [dm6]	A	C	1.643e^-4	0.62	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7263562	3R_7263562_SNP [dm3] 3R_11437840_SNP [dm6]	G	A	1.648e^-4	0.621	UTR_5_PRIME CG17230 UTR_3_PRIME sals DOWNSTREAM CG5281	TF binding site BDTNP1_TFBS_Med
2L	3298577	2L_3298577_SNP [dm3] 2L_3298577_SNP [dm6]	T	G	1.672e^-4	0.625	INTRON CG9663	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	9411876	3R_9411876_SNP [dm3] 3R_13586154_SNP [dm6]	A	T	1.677e^-4	0.625	INTERGENIC
2L	9388853	2L_9388853_SNP [dm3] 2L_9388853_SNP [dm6]	A	C	1.679e^-4	0.625	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14054745	2R_14054745_SNP [dm3] 2R_18167240_SNP [dm6]	G	A	1.681e^-4	0.625	UTR_5_PRIME CG42518 UPSTREAM CG42518 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	10026497	2R_10026497_SNP [dm3] 2R_14138992_SNP [dm6]	G	A	1.683e^-4	0.625	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11586710	3L_11586710_SNP [dm3] 3L_11593610_SNP [dm6]	T	A	1.684e^-4	0.625	UPSTREAM CR45442 & 1 other EXON CR45671 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	26389829	3R_26389829_SNP [dm3] 3R_30564107_SNP [dm6]	A	C	1.693e^-4	0.625	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	1196053	2L_1196053_SNP [dm3] 2L_1196053_SNP [dm6]	C	T	1.696e^-4	0.625	INTRON CG5001
2R	15329397	2R_15329397_SNP [dm3] 2R_19441892_SNP [dm6]	G	A	1.701e^-4	0.625	UTR_3_PRIME Spt5 UPSTREAM RpL11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	12479002	2R_12479002_DEL [dm3] 2R_16591497_DEL [dm6]	AAA	A	1.701e^-4	0.625	INTRON CG8306	TF binding site mE1_TFBS_sens
2L	12385892	2L_12385892_SNP [dm3] 2L_12385892_SNP [dm6]	T	C	1.701e^-4	0.625	INTRON bru-2
3R	9697894	3R_9697894_SNP [dm3] 3R_13872172_SNP [dm6]	G	A	1.703e^-4	0.625	INTRON E5
2R	15885873	2R_15885873_SNP [dm3] 2R_19998368_SNP [dm6]	A	G	1.704e^-4	0.625	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9165381	2R_9165381_SNP [dm3] 2R_13277876_SNP [dm6]	T	C	1.710e^-4	0.626	INTRON Dh31-R
X	3142641	X_3142641_SNP [dm3] X_3248608_SNP [dm6]	T	A	1.712e^-4	0.626	UTR_3_PRIME Pig1 UPSTREAM Sgs4 INTRON dnc
X	11798046	X_11798046_SNP [dm3] X_11904013_SNP [dm6]	G	A	1.714e^-4	0.626	SYNONYMOUS_CODING Upf1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2716175	3L_2716175_SNP [dm3] 3L_2716175_SNP [dm6]	T	C	1.722e^-4	0.627	INTERGENIC
3R	26389955	3R_26389955_SNP [dm3] 3R_30564233_SNP [dm6]	C	T	1.736e^-4	0.628	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	13184218	2R_13184218_SNP [dm3] 2R_17296713_SNP [dm6]	A	C	1.737e^-4	0.628	INTRON mbl
3R	9390048	3R_9390048_SNP [dm3] 3R_13564326_SNP [dm6]	T	A	1.740e^-4	0.628	INTERGENIC
2R	15552338	2R_15552338_SNP [dm3] 2R_19664833_SNP [dm6]	A	G	1.740e^-4	0.628	DOWNSTREAM hrg INTRON hrg
2R	13181263	2R_13181263_SNP [dm3] 2R_17293758_SNP [dm6]	G	A	1.743e^-4	0.628	INTRON mbl
3L	14346529	3L_14346529_SNP [dm3] 3L_14353429_SNP [dm6]	A	T	1.744e^-4	0.628	INTRON fz
2L	9804968	2L_9804968_SNP [dm3] 2L_9804968_SNP [dm6]	G	C	1.752e^-4	0.63	INTRON nAChRalpha6
2L	8508431	2L_8508431_SNP [dm3] 2L_8508431_SNP [dm6]	A	T	1.756e^-4	0.63	DOWNSTREAM CG13096 INTERGENIC
3L	9999054	3L_9999054_SNP [dm3] 3L_10005954_SNP [dm6]	G	A	1.764e^-4	0.63	INTRON dpr6
3R	9412581	3R_9412581_SNP [dm3] 3R_13586859_SNP [dm6]	A	G	1.767e^-4	0.63	INTERGENIC
3L	15943861	3L_15943861_SNP [dm3] 3L_15950761_SNP [dm6]	T	C	1.768e^-4	0.63	INTRON Pka-C3
3L	14140537	3L_14140537_SNP [dm3] 3L_14147437_SNP [dm6]	T	C	1.770e^-4	0.63	INTERGENIC	regulatory region REDfly_CRMs
3R	4107729	3R_4107729_SNP [dm3] 3R_8282007_SNP [dm6]	C	T	1.779e^-4	0.632	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	23558062	3R_23558062_SNP [dm3] 3R_27732340_SNP [dm6]	A	G	1.789e^-4	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7996663	2L_7996663_SNP [dm3] 2L_7996663_SNP [dm6]	T	C	1.791e^-4	0.634	SYNONYMOUS_CODING CG7227 DOWNSTREAM CR44996
2R	14760697	2R_14760697_SNP [dm3] 2R_18873192_SNP [dm6]	C	G	1.795e^-4	0.634	INTERGENIC
3R	11980350	3R_11980350_SNP [dm3] 3R_16154628_SNP [dm6]	T	C	1.800e^-4	0.635	UPSTREAM CG6006 INTERGENIC
2R	18088573	2R_18088573_SNP [dm3] 2R_22201068_SNP [dm6]	G	A	1.809e^-4	0.636	UPSTREAM CR45376 INTRON Swim	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10283237	2L_10283237_SNP [dm3] 2L_10283237_SNP [dm6]	T	A	1.816e^-4	0.636	NON_SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
2R	11334294	2R_11334294_SNP [dm3] 2R_15446789_SNP [dm6]	G	T	1.818e^-4	0.636	INTRON CG43729
3L	2745893	3L_2745893_SNP [dm3] 3L_2745893_SNP [dm6]	C	G	1.820e^-4	0.636	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9388335	3R_9388335_SNP [dm3] 3R_13562613_SNP [dm6]	A	C	1.824e^-4	0.636	INTERGENIC
2R	1891657	2R_1891657_SNP [dm3] 2R_6004152_SNP [dm6]	A	C	1.824e^-4	0.636	INTRON Src42A
3L	9329565	3L_9329565_SNP [dm3] 3L_9336465_SNP [dm6]	G	T	1.841e^-4	0.641	INTRON PGRP-LA
2R	14093832	2R_14093832_SNP [dm3] 2R_18206327_SNP [dm6]	G	C	1.852e^-4	0.643	INTERGENIC
2L	1259911	2L_1259911_SNP [dm3] 2L_1259911_SNP [dm6]	G	C	1.859e^-4	0.645	INTRON robo3	TF binding site mE1_TFBS_Kr
2L	12385853	2L_12385853_SNP [dm3] 2L_12385853_SNP [dm6]	T	A	1.886e^-4	0.652	INTRON bru-2
3R	9364280	3R_9364280_SNP [dm3] 3R_13538558_SNP [dm6]	C	G	1.888e^-4	0.652	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8534074	2L_8534074_SNP [dm3] 2L_8534074_SNP [dm6]	C	T	1.893e^-4	0.653	INTRON CG17834	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	8539845	2L_8539845_SNP [dm3] 2L_8539845_SNP [dm6]	A	C	1.906e^-4	0.656	INTRON CG17834
3L	14708808	3L_14708808_SNP [dm3] 3L_14715708_SNP [dm6]	T	A	1.924e^-4	0.66	INTRON ome
2R	9186948	2R_9186948_SNP [dm3] 2R_13299443_SNP [dm6]	C	T	1.925e^-4	0.66	START_GAINED CG17047 UTR_5_PRIME CG17047 UPSTREAM CG4734 & 1 other
3L	18304718	3L_18304718_SNP [dm3] 3L_18311618_SNP [dm6]	A	T	1.940e^-4	0.662	INTERGENIC
3R	20240655	3R_20240655_SNP [dm3] 3R_24414933_SNP [dm6]	C	T	1.941e^-4	0.662	INTRON nAChRalpha1
2R	13184445	2R_13184445_SNP [dm3] 2R_17296940_SNP [dm6]	T	G	1.944e^-4	0.662	INTRON mbl
2L	10441713	2L_10441713_INS [dm3] 2L_10441713_INS [dm6]	T	TT	1.948e^-4	0.662	UPSTREAM loh DOWNSTREAM CR45375 & 1 other INTERGENIC
3R	22577533	3R_22577533_SNP [dm3] 3R_26751811_SNP [dm6]	A	G	1.948e^-4	0.662	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18544286	2R_18544286_SNP [dm3] 2R_22656781_SNP [dm6]	G	T	1.957e^-4	0.663	SYNONYMOUS_CODING CG43325 UTR_5_PRIME CG43326 UPSTREAM CG43326 DOWNSTREAM CR45268	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	3890993	2L_3890993_SNP [dm3] 2L_3890993_SNP [dm6]	T	G	1.959e^-4	0.663	UPSTREAM capu INTRON capu
X	19098921	X_19098921_SNP [dm3] X_19204888_SNP [dm6]	G	A	1.963e^-4	0.663	SYNONYMOUS_CODING Ulp1
X	15872435	X_15872435_SNP [dm3] X_15978402_SNP [dm6]	T	C	1.981e^-4	0.666	SYNONYMOUS_CODING CG9170 DOWNSTREAM CG42766	TF binding site mE1_TFBS_cad
3R	9411821	3R_9411821_SNP [dm3] 3R_13586099_SNP [dm6]	T	G	1.982e^-4	0.666	INTERGENIC
3R	21399156	3R_21399156_SNP [dm3] 3R_25573434_SNP [dm6]	C	A	1.982e^-4	0.666	INTRON msi
3R	9386403	3R_9386403_SNP [dm3] 3R_13560681_SNP [dm6]	A	T	1.984e^-4	0.666	INTERGENIC
3L	8742024	3L_8742024_SNP [dm3] 3L_8748924_SNP [dm6]	T	A	1.998e^-4	0.669	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	15329432	2R_15329432_SNP [dm3] 2R_19441927_SNP [dm6]	G	A	2.008e^-4	0.67	UPSTREAM RpL11 DOWNSTREAM Spt5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	11980468	3R_11980468_SNP [dm3] 3R_16154746_SNP [dm6]	A	C	2.016e^-4	0.67	UPSTREAM CG6006 INTERGENIC	TF binding site mE1_TFBS_cad
3R	25616097	3R_25616097_SNP [dm3] 3R_29790375_SNP [dm6]	G	A	2.018e^-4	0.67	NON_SYNONYMOUS_CODING kay INTRON kay	TF binding site mE1_TFBS_cad
X	20412354	X_20412354_SNP [dm3] X_20541327_SNP [dm6]	A	G	2.020e^-4	0.67	INTRON RunxB
3L	15234136	3L_15234136_SNP [dm3] 3L_15241036_SNP [dm6]	A	G	2.022e^-4	0.67	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16219131	2L_16219131_SNP [dm3] 2L_16219131_SNP [dm6]	A	G	2.025e^-4	0.67	INTERGENIC
X	6652205	X_6652205_DEL [dm3] X_6758172_DEL [dm6]	AA	A	2.026e^-4	0.67	DOWNSTREAM CR43496 INTRON CG14438	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	12186364	3L_12186364_SNP [dm3] 3L_12193264_SNP [dm6]	G	A	2.035e^-4	0.671	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3L	12186370	3L_12186370_SNP [dm3] 3L_12193270_SNP [dm6]	A	G	2.036e^-4	0.671	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	13184198	2R_13184198_SNP [dm3] 2R_17296693_SNP [dm6]	C	T	2.039e^-4	0.671	INTRON mbl
X	13306393	X_13306393_SNP [dm3] X_13412360_SNP [dm6]	G	A	2.056e^-4	0.673	SYNONYMOUS_CODING CG1998 UPSTREAM CG1998 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15365823	2R_15365823_INS [dm3] 2R_19478318_INS [dm6]	A	AA	2.058e^-4	0.673	INTRON par-1
2L	3520633	2L_3520633_SNP [dm3] 2L_3520633_SNP [dm6]	A	G	2.061e^-4	0.673	SYNONYMOUS_CODING CG8851 UPSTREAM CG3213	TF binding site mE1_TFBS_cad
3L	18945669	3L_18945669_SNP [dm3] 3L_18952569_SNP [dm6]	T	G	2.062e^-4	0.673	INTRON CG6836
2R	14758876	2R_14758876_SNP [dm3] 2R_18871371_SNP [dm6]	C	T	2.064e^-4	0.673	INTERGENIC
3R	23558392	3R_23558392_SNP [dm3] 3R_27732670_SNP [dm6]	G	A	2.092e^-4	0.681	INTERGENIC
3R	9384657	3R_9384657_SNP [dm3] 3R_13558935_SNP [dm6]	T	A	2.099e^-4	0.681	INTERGENIC
2L	4052359	2L_4052359_SNP [dm3] 2L_4052359_SNP [dm6]	T	A	2.102e^-4	0.681	INTRON ed	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	23558059	3R_23558059_SNP [dm3] 3R_27732337_SNP [dm6]	G	A	2.106e^-4	0.681	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10616797	3R_10616797_SNP [dm3] 3R_14791075_SNP [dm6]	C	T	2.110e^-4	0.681	SYNONYMOUS_CODING jvl	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	1694654	3L_1694654_SNP [dm3] 3L_1694654_SNP [dm6]	A	C	2.110e^-4	0.681	INTRON CG7991 & 1 other
2R	19961156	2R_19961156_SNP [dm3] 2R_24073633_SNP [dm6]	C	T	2.119e^-4	0.683	UPSTREAM Mlp60A DOWNSTREAM CG3209 INTERGENIC
2L	10194938	2L_10194938_SNP [dm3] 2L_10194938_SNP [dm6]	C	G	2.131e^-4	0.685	SYNONYMOUS_CODING Sur
X	12941357	X_12941357_SNP [dm3] X_13047324_SNP [dm6]	C	A	2.132e^-4	0.685	INTRON rad
3L	17448275	3L_17448275_SNP [dm3] 3L_17455175_SNP [dm6]	G	A	2.139e^-4	0.685	UTR_3_PRIME CG18265
2R	14759322	2R_14759322_SNP [dm3] 2R_18871817_SNP [dm6]	A	G	2.141e^-4	0.685	INTERGENIC
3R	9795071	3R_9795071_SNP [dm3] 3R_13969349_SNP [dm6]	C	G	2.146e^-4	0.685	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	13333189	2R_13333189_SNP [dm3] 2R_17445684_SNP [dm6]	C	T	2.146e^-4	0.685	NON_SYNONYMOUS_CODING mthl4 SPLICE_SITE_REGION mthl4 UPSTREAM EDTP
2R	12052705	2R_12052705_SNP [dm3] 2R_16165200_SNP [dm6]	A	C	2.157e^-4	0.687	INTRON lbk	TF binding site mE1_TFBS_HSA
3L	8742015	3L_8742015_SNP [dm3] 3L_8748915_SNP [dm6]	T	A	2.165e^-4	0.688	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	12385903	2L_12385903_SNP [dm3] 2L_12385903_SNP [dm6]	G	A	2.181e^-4	0.691	INTRON bru-2
X	7747159	X_7747159_SNP [dm3] X_7853126_SNP [dm6]	T	G	2.184e^-4	0.691	SYNONYMOUS_CODING CG10920	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5314245	2L_5314245_SNP [dm3] 2L_5314245_SNP [dm6]	C	T	2.186e^-4	0.691	INTRON CG14024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11798822	2R_11798822_SNP [dm3] 2R_15911317_SNP [dm6]	C	T	2.187e^-4	0.691	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15790614	2R_15790614_SNP [dm3] 2R_19903109_SNP [dm6]	T	C	2.191e^-4	0.691	INTERGENIC
X	8787817	X_8787817_SNP [dm3] X_8893784_SNP [dm6]	T	A	2.200e^-4	0.692	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	11941879	2R_11941879_SNP [dm3] 2R_16054374_SNP [dm6]	A	T	2.203e^-4	0.692	INTRON CG8405
2R	13920130	2R_13920130_INS [dm3] 2R_18032625_INS [dm6]	C	CGGTGCAACAAAAAACAAAA...	2.207e^-4	0.692	INTERGENIC
2R	13184179	2R_13184179_SNP [dm3] 2R_17296674_SNP [dm6]	T	C	2.220e^-4	0.694	INTRON mbl
2R	13512518	2R_13512518_SNP [dm3] 2R_17625013_SNP [dm6]	G	T	2.221e^-4	0.694	INTRON CG10936
3R	13466648	3R_13466648_SNP [dm3] 3R_17640926_SNP [dm6]	A	T	2.222e^-4	0.694	INTRON CG43175
2L	17232433	2L_17232433_SNP [dm3] 2L_17232433_SNP [dm6]	T	A	2.226e^-4	0.694	INTRON beat-IIIc
3L	8741996	3L_8741996_SNP [dm3] 3L_8748896_SNP [dm6]	G	A	2.237e^-4	0.694	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	15484962	3R_15484962_SNP [dm3] 3R_19659240_SNP [dm6]	C	T	2.258e^-4	0.694	UPSTREAM ort INTERGENIC
3R	15997843	3R_15997843_SNP [dm3] 3R_20172121_SNP [dm6]	C	T	2.259e^-4	0.694	INTRON CG5023
2L	3501369	2L_3501369_SNP [dm3] 2L_3501369_SNP [dm6]	C	A	2.263e^-4	0.694	SYNONYMOUS_CODING tim
2R	13184344	2R_13184344_SNP [dm3] 2R_17296839_SNP [dm6]	C	T	2.263e^-4	0.694	INTRON mbl
2L	13022818	2L_13022818_SNP [dm3] 2L_13022818_SNP [dm6]	G	T	2.265e^-4	0.694	UTR_3_PRIME CG9932
2R	18361075	2R_18361075_SNP [dm3] 2R_22473570_SNP [dm6]	C	T	2.272e^-4	0.694	DOWNSTREAM CG10384 INTRON CG45062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14337650	3L_14337650_SNP [dm3] 3L_14344550_SNP [dm6]	G	A	2.272e^-4	0.694	INTRON fz
2L	5577269	2L_5577269_SNP [dm3] 2L_5577269_SNP [dm6]	T	A	2.274e^-4	0.694	INTERGENIC
2R	16074744	2R_16074744_SNP [dm3] 2R_20187239_SNP [dm6]	A	G	2.280e^-4	0.694	INTERGENIC
2L	12385855	2L_12385855_SNP [dm3] 2L_12385855_SNP [dm6]	A	G	2.280e^-4	0.694	INTRON bru-2
2R	6382882	2R_6382882_SNP [dm3] 2R_10495377_SNP [dm6]	T	G	2.287e^-4	0.694	DOWNSTREAM lola INTRON lola
2R	11608878	2R_11608878_SNP [dm3] 2R_15721373_SNP [dm6]	C	A	2.288e^-4	0.694	INTERGENIC
3R	13466657	3R_13466657_SNP [dm3] 3R_17640935_SNP [dm6]	C	T	2.289e^-4	0.694	INTRON CG43175
2L	8528677	2L_8528677_SNP [dm3] 2L_8528677_SNP [dm6]	A	T	2.297e^-4	0.694	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
3R	16534400	3R_16534400_SNP [dm3] 3R_20708678_SNP [dm6]	G	A	2.297e^-4	0.694	INTRON Oamb
3L	11318881	3L_11318881_SNP [dm3] 3L_11325781_SNP [dm6]	T	C	2.298e^-4	0.694	UPSTREAM CR44723 INTERGENIC
3L	8288353	3L_8288353_SNP [dm3] 3L_8295253_SNP [dm6]	T	A	2.300e^-4	0.694	UTR_5_PRIME CG7201
2L	10915601	2L_10915601_SNP [dm3] 2L_10915601_SNP [dm6]	C	T	2.301e^-4	0.694	INTERGENIC
2L	8762613	2L_8762613_SNP [dm3] 2L_8762613_SNP [dm6]	C	G	2.303e^-4	0.694	INTERGENIC
3R	23274004	3R_23274004_SNP [dm3] 3R_27448282_SNP [dm6]	C	T	2.306e^-4	0.694	INTERGENIC
3R	9385594	3R_9385594_SNP [dm3] 3R_13559872_SNP [dm6]	A	T	2.318e^-4	0.694	INTERGENIC
3L	1354785	3L_1354785_SNP [dm3] 3L_1354785_SNP [dm6]	A	G	2.322e^-4	0.694	INTRON Ptp61F
2R	19256787	2R_19256787_SNP [dm3] 2R_23369264_SNP [dm6]	A	G	2.323e^-4	0.694	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
3R	25505991	3R_25505991_SNP [dm3] 3R_29680269_SNP [dm6]	G	A	2.324e^-4	0.694	UTR_3_PRIME CG7582 DOWNSTREAM Cap-D2	TF binding site mE1_TFBS_cad
2R	13960825	2R_13960825_SNP [dm3] 2R_18073320_SNP [dm6]	C	T	2.325e^-4	0.694	UPSTREAM CR45022 INTRON CG34386
2L	15466181	2L_15466181_SNP [dm3] 2L_15466181_SNP [dm6]	T	C	2.326e^-4	0.694	INTERGENIC
2R	15255177	2R_15255177_SNP [dm3] 2R_19367672_SNP [dm6]	C	T	2.337e^-4	0.694	DOWNSTREAM CG10051 INTRON CG9416
2R	14762180	2R_14762180_SNP [dm3] 2R_18874675_SNP [dm6]	C	T	2.338e^-4	0.694	INTERGENIC
2L	14517128	2L_14517128_SNP [dm3] 2L_14517128_SNP [dm6]	A	C	2.339e^-4	0.694	UPSTREAM tRNA:G3:35Ba INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18040585	2R_18040585_DEL [dm3] 2R_22153080_DEL [dm6]	TCTAAA	T	2.354e^-4	0.698	INTRON a	TF binding site mE1_TFBS_cnc
2L	1245028	2L_1245028_SNP [dm3] 2L_1245028_SNP [dm6]	G	A	2.361e^-4	0.698	INTERGENIC
2L	3421300	2L_3421300_SNP [dm3] 2L_3421300_SNP [dm6]	G	C	2.367e^-4	0.699	INTRON pgant2
3L	18304853	3L_18304853_SNP [dm3] 3L_18311753_SNP [dm6]	T	C	2.375e^-4	0.7	INTERGENIC
2L	15108633	2L_15108633_SNP [dm3] 2L_15108633_SNP [dm6]	T	A	2.380e^-4	0.7	UPSTREAM CG15269 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12052607	2R_12052607_SNP [dm3] 2R_16165102_SNP [dm6]	C	T	2.384e^-4	0.7	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_HSA
2R	11136069	2R_11136069_DEL [dm3] 2R_15248564_DEL [dm6]	TA	T	2.384e^-4	0.7	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	9385673	3R_9385673_SNP [dm3] 3R_13559951_SNP [dm6]	G	T	2.398e^-4	0.703	INTERGENIC
2L	8539516	2L_8539516_SNP [dm3] 2L_8539516_SNP [dm6]	C	T	2.410e^-4	0.705	INTRON CG17834
3L	10367737	3L_10367737_SNP [dm3] 3L_10374637_SNP [dm6]	C	A	2.420e^-4	0.705	INTERGENIC
2L	14400199	2L_14400199_SNP [dm3] 2L_14400199_SNP [dm6]	G	C	2.423e^-4	0.705	INTRON elB
2R	18081851	2R_18081851_SNP [dm3] 2R_22194346_SNP [dm6]	A	G	2.423e^-4	0.705	INTRON Swim
2L	3505553	2L_3505553_SNP [dm3] 2L_3505553_SNP [dm6]	T	C	2.429e^-4	0.705	INTRON tim	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12621142	2R_12621142_SNP [dm3] 2R_16733637_SNP [dm6]	C	T	2.433e^-4	0.705	UPSTREAM CG30463 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22216662	3R_22216662_SNP [dm3] 3R_26390940_SNP [dm6]	G	A	2.434e^-4	0.705	INTERGENIC
2R	14765577	2R_14765577_SNP [dm3] 2R_18878072_SNP [dm6]	G	A	2.436e^-4	0.705	UPSTREAM sano INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6444662	2R_6444662_SNP [dm3] 2R_10557157_SNP [dm6]	C	T	2.438e^-4	0.705	UPSTREAM psq INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	16113910	2R_16113910_DEL [dm3] 2R_20226405_DEL [dm6]	ACA	A	2.445e^-4	0.705	INTERGENIC
2L	12384592	2L_12384592_SNP [dm3] 2L_12384592_SNP [dm6]	A	C	2.448e^-4	0.705	INTRON bru-2
3R	25865299	3R_25865299_SNP [dm3] 3R_30039577_SNP [dm6]	A	G	2.458e^-4	0.706	UPSTREAM Sry-beta & 2 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	8512119	2L_8512119_INS [dm3] 2L_8512119_INS [dm6]	T	TATTAGTAGAGACAGAC...	2.460e^-4	0.706	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	14096893	3R_14096893_SNP [dm3] 3R_18271171_SNP [dm6]	A	T	2.464e^-4	0.707	UTR_3_PRIME CG18599 DOWNSTREAM Vps39	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	14708199	2R_14708199_SNP [dm3] 2R_18820694_SNP [dm6]	C	T	2.467e^-4	0.707	SYNONYMOUS_CODING Phb2	TF binding site BDTNP1_TFBS_dl
3R	9429729	3R_9429729_SNP [dm3] 3R_13604007_SNP [dm6]	A	T	2.478e^-4	0.707	INTERGENIC
3L	17595842	3L_17595842_DEL [dm3] 3L_17602742_DEL [dm6]	TT	T	2.480e^-4	0.707	UTR_5_PRIME Eip74EF
3R	15997874	3R_15997874_INS [dm3] 3R_20172152_INS [dm6]	T	TGTAACCTGTTAGATACTTT...	2.484e^-4	0.707	INTRON CG5023
3R	21608860	3R_21608860_SNP [dm3] 3R_25783138_SNP [dm6]	A	C	2.491e^-4	0.707	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	11352197	X_11352197_SNP [dm3] X_11458164_SNP [dm6]	A	C	2.495e^-4	0.707	INTRON HP5
2L	8325110	2L_8325110_SNP [dm3] 2L_8325110_SNP [dm6]	G	T	2.502e^-4	0.707	UTR_5_PRIME CG7781
3L	3960537	3L_3960537_SNP [dm3] 3L_3960537_SNP [dm6]	A	T	2.504e^-4	0.707	UPSTREAM CG12605 INTRON CG12605
3R	14695171	3R_14695171_SNP [dm3] 3R_18869449_SNP [dm6]	G	A	2.504e^-4	0.707	INTERGENIC
X	3142599	X_3142599_SNP [dm3] X_3248566_SNP [dm6]	T	C	2.504e^-4	0.707	UPSTREAM Sgs4 DOWNSTREAM Pig1 INTRON dnc
2R	15552477	2R_15552477_SNP [dm3] 2R_19664972_SNP [dm6]	T	G	2.507e^-4	0.707	DOWNSTREAM hrg INTRON hrg
2L	8512102	2L_8512102_SNP [dm3] 2L_8512102_SNP [dm6]	T	C	2.517e^-4	0.709	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	23475233	3R_23475233_SNP [dm3] 3R_27649511_SNP [dm6]	C	T	2.527e^-4	0.71	UTR_5_PRIME tau INTRON tau
3R	9411898	3R_9411898_SNP [dm3] 3R_13586176_SNP [dm6]	G	A	2.531e^-4	0.71	INTERGENIC
2L	8541340	2L_8541340_SNP [dm3] 2L_8541340_SNP [dm6]	T	C	2.533e^-4	0.71	UTR_3_PRIME CG17834 UPSTREAM tRNA:CR31603 & 1 other DOWNSTREAM tRNA:CR31604	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16396695	3R_16396695_SNP [dm3] 3R_20570973_SNP [dm6]	G	A	2.544e^-4	0.711	INTRON CG5191
3R	25562517	3R_25562517_SNP [dm3] 3R_29736795_SNP [dm6]	T	A	2.546e^-4	0.711	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	14993373	2R_14993373_SNP [dm3] 2R_19105868_SNP [dm6]	A	T	2.554e^-4	0.711	INTRON 5-HT1A
2L	12226651	2L_12226651_SNP [dm3] 2L_12226651_SNP [dm6]	G	A	2.557e^-4	0.711	INTRON aret
3R	7249348	3R_7249348_SNP [dm3] 3R_11423626_SNP [dm6]	G	A	2.559e^-4	0.711	NON_SYNONYMOUS_CODING CG5270	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13870327	2R_13870327_SNP [dm3] 2R_17982822_SNP [dm6]	A	G	2.569e^-4	0.711	INTRON dpr13
3R	7220567	3R_7220567_SNP [dm3] 3R_11394845_SNP [dm6]	G	A	2.571e^-4	0.711	UTR_3_PRIME pros	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14101329	3R_14101329_SNP [dm3] 3R_18275607_SNP [dm6]	G	T	2.576e^-4	0.711	INTRON eIF-1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17068724	2R_17068724_SNP [dm3] 2R_21181219_SNP [dm6]	G	C	2.580e^-4	0.711	UPSTREAM tRNA:CR33539 INTRON Pu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9524038	2R_9524038_INS [dm3] 2R_13636533_INS [dm6]	T	TTT	2.582e^-4	0.711	INTRON fas
2L	15461232	2L_15461232_SNP [dm3] 2L_15461232_SNP [dm6]	C	T	2.583e^-4	0.711	INTERGENIC
2R	11277949	2R_11277949_SNP [dm3] 2R_15390444_SNP [dm6]	G	A	2.601e^-4	0.711	INTERGENIC
X	3226219	X_3226219_SNP [dm3] X_3332186_SNP [dm6]	C	T	2.604e^-4	0.711	INTRON CR44886 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	14222237	2R_14222237_SNP [dm3] 2R_18334732_SNP [dm6]	G	A	2.606e^-4	0.711	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10848239	3L_10848239_SNP [dm3] 3L_10855139_SNP [dm6]	G	A	2.610e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14528183	3R_14528183_SNP [dm3] 3R_18702461_SNP [dm6]	A	G	2.618e^-4	0.711	INTERGENIC
2L	14520047	2L_14520047_SNP [dm3] 2L_14520047_SNP [dm6]	G	C	2.619e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10378434	3L_10378434_SNP [dm3] 3L_10385334_SNP [dm6]	G	A	2.620e^-4	0.711	INTERGENIC
2R	11471261	2R_11471261_SNP [dm3] 2R_15583756_SNP [dm6]	G	A	2.620e^-4	0.711	INTERGENIC
2R	14761204	2R_14761204_SNP [dm3] 2R_18873699_SNP [dm6]	C	T	2.623e^-4	0.711	INTERGENIC
2L	3505819	2L_3505819_SNP [dm3] 2L_3505819_SNP [dm6]	A	C	2.629e^-4	0.711	INTRON tim
2L	8512125	2L_8512125_INS [dm3] 2L_8512125_INS [dm6]	T	TCGATTCAAACTCATGCTAA...	2.630e^-4	0.711	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	15552334	2R_15552334_SNP [dm3] 2R_19664829_SNP [dm6]	T	C	2.630e^-4	0.711	DOWNSTREAM hrg INTRON hrg
3R	9411899	3R_9411899_SNP [dm3] 3R_13586177_SNP [dm6]	T	A	2.634e^-4	0.711	INTERGENIC
X	9179925	X_9179925_SNP [dm3] X_9285892_SNP [dm6]	A	C	2.636e^-4	0.711	UTR_5_PRIME lz
X	12958324	X_12958324_SNP [dm3] X_13064291_SNP [dm6]	T	C	2.640e^-4	0.711	INTRON rad
2R	17068301	2R_17068301_SNP [dm3] 2R_21180796_SNP [dm6]	A	G	2.641e^-4	0.711	UPSTREAM tRNA:CR33539 INTRON Pu	TF binding site mE1_TFBS_HSA
3R	9377112	3R_9377112_SNP [dm3] 3R_13551390_SNP [dm6]	A	G	2.642e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	9385645	3R_9385645_SNP [dm3] 3R_13559923_SNP [dm6]	A	T	2.646e^-4	0.711	INTERGENIC
2R	11281183	2R_11281183_SNP [dm3] 2R_15393678_SNP [dm6]	C	T	2.651e^-4	0.711	INTERGENIC
X	16137907	X_16137907_INS [dm3] X_16243874_INS [dm6]	A	AA	2.679e^-4	0.718	INTERGENIC
3R	23276022	3R_23276022_SNP [dm3] 3R_27450300_SNP [dm6]	C	G	2.686e^-4	0.719	INTERGENIC
2R	15690575	2R_15690575_SNP [dm3] 2R_19803070_SNP [dm6]	C	T	2.702e^-4	0.72	DOWNSTREAM tRNA:K2:56EF INTERGENIC
3L	14189345	3L_14189345_SNP [dm3] 3L_14196245_SNP [dm6]	A	T	2.708e^-4	0.72	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10330805	2R_10330805_SNP [dm3] 2R_14443300_SNP [dm6]	A	G	2.718e^-4	0.72	INTRON Oaz
2L	5574338	2L_5574338_SNP [dm3] 2L_5574338_SNP [dm6]	C	A	2.719e^-4	0.72	INTERGENIC
2L	7278031	2L_7278031_SNP [dm3] 2L_7278031_SNP [dm6]	A	T	2.723e^-4	0.72	UPSTREAM Wnt4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	8680641	2L_8680641_SNP [dm3] 2L_8680641_SNP [dm6]	C	T	2.745e^-4	0.72	UPSTREAM CG9287 DOWNSTREAM CG9289 INTERGENIC
2R	11136113	2R_11136113_SNP [dm3] 2R_15248608_SNP [dm6]	A	T	2.745e^-4	0.72	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	15194055	2L_15194055_SNP [dm3] 2L_15194055_SNP [dm6]	G	C	2.746e^-4	0.72	INTRON CG4168
3R	9357970	3R_9357970_SNP [dm3] 3R_13532248_SNP [dm6]	C	T	2.747e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6077174	2R_6077174_SNP [dm3] 2R_10189669_SNP [dm6]	A	G	2.751e^-4	0.72	INTRON KCNQ
3L	2679592	3L_2679592_SNP [dm3] 3L_2679592_SNP [dm6]	A	T	2.754e^-4	0.72	INTRON Fife	TF binding site mE1_TFBS_chinmo
3R	9356903	3R_9356903_INS [dm3] 3R_13531181_INS [dm6]	A	AA	2.755e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25691128	3R_25691128_SNP [dm3] 3R_29865406_SNP [dm6]	A	T	2.756e^-4	0.72	SPLICE_SITE_REGION Zip99C UTR_5_PRIME Zip99C INTRON Zip99C
2R	8467841	2R_8467841_SNP [dm3] 2R_12580336_SNP [dm6]	G	A	2.759e^-4	0.72	NON_SYNONYMOUS_CODING Sin3A
3L	8721223	3L_8721223_SNP [dm3] 3L_8728123_SNP [dm6]	C	A	2.761e^-4	0.72	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
3L	5022354	3L_5022354_SNP [dm3] 3L_5022354_SNP [dm6]	C	A	2.763e^-4	0.72	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19738224	X_19738224_SNP [dm3] X_19844191_SNP [dm6]	G	A	2.768e^-4	0.72	INTRON pico	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	26274796	3R_26274796_SNP [dm3] 3R_30449074_SNP [dm6]	G	A	2.770e^-4	0.72	SYNONYMOUS_CODING aralar1	TF binding site mE1_TFBS_chinmo
3L	7604565	3L_7604565_SNP [dm3] 3L_7611465_SNP [dm6]	A	C	2.778e^-4	0.72	INTRON CG33275
3L	18304778	3L_18304778_SNP [dm3] 3L_18311678_SNP [dm6]	T	A	2.780e^-4	0.72	INTERGENIC
3R	9411701	3R_9411701_SNP [dm3] 3R_13585979_SNP [dm6]	A	G	2.781e^-4	0.72	INTERGENIC
2L	8512136	2L_8512136_INS [dm3] 2L_8512136_INS [dm6]	A	AAAACATTAACATATTAACT...	2.785e^-4	0.72	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	7840930	3L_7840930_DEL [dm3] 3L_7847830_DEL [dm6]	CC	C	2.785e^-4	0.72	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9442358	3R_9442358_SNP [dm3] 3R_13616636_SNP [dm6]	A	G	2.787e^-4	0.72	DOWNSTREAM CG9269 INTERGENIC
3R	9386561	3R_9386561_SNP [dm3] 3R_13560839_SNP [dm6]	T	A	2.792e^-4	0.72	INTERGENIC
2L	19207519	2L_19207519_SNP [dm3] 2L_19207519_SNP [dm6]	G	T	2.792e^-4	0.72	INTRON drl
3R	25677164	3R_25677164_SNP [dm3] 3R_29851442_SNP [dm6]	T	C	2.803e^-4	0.721	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13765469	3R_13765469_INS [dm3] 3R_17939747_INS [dm6]	G	GCGTTT	2.804e^-4	0.721	INTRON cpo	TF binding site mE1_TFBS_sens
2R	14760140	2R_14760140_DEL [dm3] 2R_18872635_DEL [dm6]	CATAATT	C	2.804e^-4	0.721	INTERGENIC
3R	9362456	3R_9362456_SNP [dm3] 3R_13536734_SNP [dm6]	C	T	2.814e^-4	0.721	INTERGENIC
2L	12385795	2L_12385795_SNP [dm3] 2L_12385795_SNP [dm6]	A	G	2.815e^-4	0.721	INTRON bru-2
3L	14289841	3L_14289841_SNP [dm3] 3L_14296741_SNP [dm6]	T	G	2.830e^-4	0.724	INTRON fz
3R	14695125	3R_14695125_SNP [dm3] 3R_18869403_SNP [dm6]	G	A	2.833e^-4	0.724	INTERGENIC
2R	11880074	2R_11880074_SNP [dm3] 2R_15992569_SNP [dm6]	C	T	2.847e^-4	0.724	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14901395	2L_14901395_SNP [dm3] 2L_14901395_SNP [dm6]	A	C	2.851e^-4	0.724	INTERGENIC
2R	11882961	2R_11882961_SNP [dm3] 2R_15995456_SNP [dm6]	T	A	2.863e^-4	0.724	SYNONYMOUS_CODING ATPCL	TF binding site mE1_TFBS_chinmo
2L	1240526	2L_1240526_SNP [dm3] 2L_1240526_SNP [dm6]	C	T	2.865e^-4	0.724	SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11798121	X_11798121_SNP [dm3] X_11904088_SNP [dm6]	A	G	2.868e^-4	0.724	SYNONYMOUS_CODING Upf1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26084190	3R_26084190_INS [dm3] 3R_30258468_INS [dm6]	A	GCAAATTTGATAG...	2.871e^-4	0.724	INTERGENIC
3R	3698457	3R_3698457_SNP [dm3] 3R_7872735_SNP [dm6]	T	C	2.873e^-4	0.724	INTRON CG17816
3R	9396618	3R_9396618_SNP [dm3] 3R_13570896_SNP [dm6]	C	T	2.874e^-4	0.724	INTERGENIC
3R	14458025	3R_14458025_SNP [dm3] 3R_18632303_SNP [dm6]	C	A	2.876e^-4	0.724	INTRON qin & 1 other
2L	7278033	2L_7278033_SNP [dm3] 2L_7278033_SNP [dm6]	C	T	2.877e^-4	0.724	UPSTREAM Wnt4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	15584237	3R_15584237_DEL [dm3] 3R_19758515_DEL [dm6]	CCACCACACC	C	2.878e^-4	0.724	INTRON GluClalpha
3L	11429295	3L_11429295_SNP [dm3] 3L_11436195_SNP [dm6]	A	T	2.880e^-4	0.724	UPSTREAM CG6149 EXON CR44548	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3558599	X_3558599_SNP [dm3] X_3664566_SNP [dm6]	C	G	2.885e^-4	0.724	SYNONYMOUS_CODING AstA-R1
3L	10357987	3L_10357987_SNP [dm3] 3L_10364887_SNP [dm6]	A	T	2.903e^-4	0.727	UPSTREAM mir-276a EXON CR44327
2R	11330883	2R_11330883_SNP [dm3] 2R_15443378_SNP [dm6]	G	A	2.907e^-4	0.727	INTRON CG43729
X	17505472	X_17505472_SNP [dm3] X_17611439_SNP [dm6]	C	T	2.911e^-4	0.727	INTERGENIC
2R	12031972	2R_12031972_SNP [dm3] 2R_16144467_SNP [dm6]	T	G	2.914e^-4	0.727	SYNONYMOUS_CODING Aats-cys
3R	15997878	3R_15997878_SNP [dm3] 3R_20172156_SNP [dm6]	A	G	2.916e^-4	0.727	INTRON CG5023
2L	1033968	2L_1033968_SNP [dm3] 2L_1033968_SNP [dm6]	G	A	2.921e^-4	0.728	NON_SYNONYMOUS_CODING IA-2
3R	14458024	3R_14458024_SNP [dm3] 3R_18632302_SNP [dm6]	C	A	2.935e^-4	0.73	INTRON qin & 1 other
X	10854594	X_10854594_SNP [dm3] X_10960561_SNP [dm6]	G	T	2.946e^-4	0.731	INTRON Myo10A	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	8541908	2L_8541908_SNP [dm3] 2L_8541908_SNP [dm6]	A	G	2.950e^-4	0.731	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	14102934	3R_14102934_SNP [dm3] 3R_18277212_SNP [dm6]	T	C	2.953e^-4	0.731	DOWNSTREAM CG7142 INTRON eIF-1A
X	4557837	X_4557837_SNP [dm3] X_4663804_SNP [dm6]	A	T	2.957e^-4	0.731	INTRON CG3009
3R	7768663	3R_7768663_SNP [dm3] 3R_11942941_SNP [dm6]	C	A	2.958e^-4	0.731	INTRON Cad87A
3R	9398501	3R_9398501_SNP [dm3] 3R_13572779_SNP [dm6]	G	A	2.965e^-4	0.731	INTERGENIC
3R	14102499	3R_14102499_SNP [dm3] 3R_18276777_SNP [dm6]	C	A	2.966e^-4	0.731	INTRON eIF-1A	TF binding site BDTNP1_TFBS_twi
2R	14756153	2R_14756153_SNP [dm3] 2R_18868648_SNP [dm6]	G	A	2.971e^-4	0.731	UPSTREAM CG43109 DOWNSTREAM DptB INTERGENIC
2L	8528781	2L_8528781_SNP [dm3] 2L_8528781_SNP [dm6]	G	C	2.979e^-4	0.732	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6524674	2R_6524674_SNP [dm3] 2R_10637169_SNP [dm6]	A	G	3.005e^-4	0.734	INTRON CG11883
3R	7767150	3R_7767150_SNP [dm3] 3R_11941428_SNP [dm6]	A	T	3.007e^-4	0.734	INTRON Cad87A
2L	3890974	2L_3890974_SNP [dm3] 2L_3890974_SNP [dm6]	C	G	3.009e^-4	0.734	UPSTREAM capu INTRON capu
2R	15205326	2R_15205326_SNP [dm3] 2R_19317821_SNP [dm6]	C	T	3.010e^-4	0.734	INTRON Rgk1
3R	11980355	3R_11980355_SNP [dm3] 3R_16154633_SNP [dm6]	T	A	3.013e^-4	0.734	UPSTREAM CG6006 INTERGENIC
2R	13150872	2R_13150872_SNP [dm3] 2R_17263367_SNP [dm6]	C	A	3.017e^-4	0.734	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10413559	3L_10413559_SNP [dm3] 3L_10420459_SNP [dm6]	A	G	3.030e^-4	0.734	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25563014	3R_25563014_SNP [dm3] 3R_29737292_SNP [dm6]	C	T	3.034e^-4	0.734	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601 & 1 other	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
3R	25563253	3R_25563253_SNP [dm3] 3R_29737531_SNP [dm6]	T	G	3.034e^-4	0.734	UPSTREAM CG7601 & 1 other INTRON CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	21544745	3R_21544745_SNP [dm3] 3R_25719023_SNP [dm6]	T	G	3.035e^-4	0.734	INTRON LpR2
3R	11938666	3R_11938666_SNP [dm3] 3R_16112944_SNP [dm6]	C	G	3.045e^-4	0.734	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10794504	2R_10794504_SNP [dm3] 2R_14906999_SNP [dm6]	T	G	3.045e^-4	0.734	UPSTREAM CG10249 INTRON CG10249
3L	15275051	3L_15275051_DEL [dm3] 3L_15281951_DEL [dm6]	ACCCACT	A	3.046e^-4	0.734	INTERGENIC
2R	18261053	2R_18261053_SNP [dm3] 2R_22373548_SNP [dm6]	C	A	3.047e^-4	0.734	UPSTREAM Liprin-gamma DOWNSTREAM CR44759 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16191810	2L_16191810_SNP [dm3] 2L_16191810_SNP [dm6]	C	G	3.063e^-4	0.734	INTERGENIC
3L	12630150	3L_12630150_SNP [dm3] 3L_12637050_SNP [dm6]	A	C	3.063e^-4	0.734	INTRON CR32111
3R	3698224	3R_3698224_SNP [dm3] 3R_7872502_SNP [dm6]	A	C	3.065e^-4	0.734	INTRON CG17816
2R	14760363	2R_14760363_SNP [dm3] 2R_18872858_SNP [dm6]	G	T	3.069e^-4	0.734	INTERGENIC
2L	900008	2L_900008_SNP [dm3] 2L_900008_SNP [dm6]	T	C	3.072e^-4	0.734	SYNONYMOUS_CODING Lsp1beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15477872	3R_15477872_SNP [dm3] 3R_19652150_SNP [dm6]	G	A	3.074e^-4	0.734	NON_SYNONYMOUS_CODING CG31219 DOWNSTREAM CG6184
2L	8533806	2L_8533806_SNP [dm3] 2L_8533806_SNP [dm6]	C	G	3.075e^-4	0.734	INTRON CG17834	TF binding site mE1_TFBS_cad
3R	20296799	3R_20296799_SNP [dm3] 3R_24471077_SNP [dm6]	T	C	3.075e^-4	0.734	DOWNSTREAM CG31128 INTERGENIC
X	11554899	X_11554899_SNP [dm3] X_11660866_SNP [dm6]	G	A	3.076e^-4	0.734	INTRON Ptp10D
3R	14099457	3R_14099457_SNP [dm3] 3R_18273735_SNP [dm6]	A	C	3.084e^-4	0.735	UPSTREAM eIF-1A INTRON Vps39	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	16336629	2R_16336629_SNP [dm3] 2R_20449124_SNP [dm6]	G	C	3.094e^-4	0.735	INTRON CG12484	TF binding site mE1_TFBS_inv
3R	10626745	3R_10626745_SNP [dm3] 3R_14801023_SNP [dm6]	A	T	3.099e^-4	0.735	UTR_3_PRIME CG14856 UPSTREAM CG14857
2R	15150169	2R_15150169_SNP [dm3] 2R_19262664_SNP [dm6]	A	G	3.108e^-4	0.735	DOWNSTREAM CG7229 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	16062788	2R_16062788_SNP [dm3] 2R_20175283_SNP [dm6]	T	A	3.121e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4579262	3L_4579262_DEL [dm3] 3L_4579262_DEL [dm6]	TT	T	3.130e^-4	0.735	INTRON CG42540
3R	3488287	3R_3488287_SNP [dm3] 3R_7662565_SNP [dm6]	G	A	3.135e^-4	0.735	UTR_5_PRIME Nlg1
2R	14961210	2R_14961210_SNP [dm3] 2R_19073705_SNP [dm6]	A	T	3.135e^-4	0.735	INTRON 5-HT1A
3R	9394100	3R_9394100_SNP [dm3] 3R_13568378_SNP [dm6]	T	C	3.139e^-4	0.735	INTERGENIC
2R	13603019	2R_13603019_SNP [dm3] 2R_17715514_SNP [dm6]	G	C	3.152e^-4	0.735	INTRON CG6424	TF binding site BDTNP1_TFBS_dl
2L	5329695	2L_5329695_SNP [dm3] 2L_5329695_SNP [dm6]	C	A	3.154e^-4	0.735	UPSTREAM CG14022 & 1 other DOWNSTREAM fusl INTERGENIC
2R	18053144	2R_18053144_SNP [dm3] 2R_22165639_SNP [dm6]	A	G	3.157e^-4	0.735	INTRON a
X	6690073	X_6690073_SNP [dm3] X_6796040_SNP [dm6]	C	T	3.158e^-4	0.735	UPSTREAM C3G INTRON C3G
3R	24277194	3R_24277194_DEL [dm3] 3R_28451472_DEL [dm6]	AA	A	3.160e^-4	0.735	INTRON beat-VI
2R	14732687	2R_14732687_SNP [dm3] 2R_18845182_SNP [dm6]	A	G	3.165e^-4	0.735	SYNONYMOUS_CODING CG15099
3R	14524115	3R_14524115_SNP [dm3] 3R_18698393_SNP [dm6]	G	T	3.169e^-4	0.735	INTERGENIC
3R	15997879	3R_15997879_DEL [dm3] 3R_20172157_DEL [dm6]	GT	G	3.174e^-4	0.735	INTRON CG5023
3R	26926104	3R_26926104_SNP [dm3] 3R_31100382_SNP [dm6]	T	C	3.177e^-4	0.735	NON_SYNONYMOUS_CODING CG15553
3L	1198495	3L_1198495_DEL [dm3] 3L_1198495_DEL [dm6]	TC	T	3.177e^-4	0.735	INTRON Aplip1
3L	14140506	3L_14140506_SNP [dm3] 3L_14147406_SNP [dm6]	G	A	3.196e^-4	0.735	INTERGENIC	regulatory region REDfly_CRMs
3L	15697437	3L_15697437_SNP [dm3] 3L_15704337_SNP [dm6]	G	C	3.200e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26433827	3R_26433827_SNP [dm3] 3R_30608105_SNP [dm6]	T	G	3.202e^-4	0.735	SYNONYMOUS_CODING CG31016
3R	19659897	3R_19659897_SNP [dm3] 3R_23834175_SNP [dm6]	A	C	3.204e^-4	0.735	INTRON CG34355
2R	2447128	2R_2447128_SNP [dm3] 2R_6559623_SNP [dm6]	G	A	3.209e^-4	0.735	INTRON jing
3R	9357655	3R_9357655_SNP [dm3] 3R_13531933_SNP [dm6]	G	A	3.210e^-4	0.735	INTERGENIC
3R	19066093	3R_19066093_SNP [dm3] 3R_23240371_SNP [dm6]	T	G	3.211e^-4	0.735	UPSTREAM CG4467 INTRON CG4467
3R	21324016	3R_21324016_SNP [dm3] 3R_25498294_SNP [dm6]	G	A	3.218e^-4	0.735	INTERGENIC
2L	18385947	2L_18385947_SNP [dm3] 2L_18385947_SNP [dm6]	A	C	3.229e^-4	0.735	INTRON Fas3
2L	14206968	2L_14206968_SNP [dm3] 2L_14206968_SNP [dm6]	G	T	3.229e^-4	0.735	INTRON Dyrk2
2L	2893660	2L_2893660_SNP [dm3] 2L_2893660_SNP [dm6]	A	G	3.231e^-4	0.735	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3698160	3R_3698160_SNP [dm3] 3R_7872438_SNP [dm6]	G	A	3.243e^-4	0.735	INTRON CG17816
2R	19398776	2R_19398776_SNP [dm3] 2R_23511253_SNP [dm6]	C	T	3.243e^-4	0.735	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
3R	25865270	3R_25865270_SNP [dm3] 3R_30039548_SNP [dm6]	G	C	3.247e^-4	0.735	UPSTREAM Sry-beta & 2 others INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	11980357	3R_11980357_SNP [dm3] 3R_16154635_SNP [dm6]	A	T	3.256e^-4	0.735	UPSTREAM CG6006 INTERGENIC
2R	13777414	2R_13777414_SNP [dm3] 2R_17889909_SNP [dm6]	C	G	3.267e^-4	0.735	UTR_5_PRIME PPO1 INTRON Elk
2R	14041460	2R_14041460_SNP [dm3] 2R_18153955_SNP [dm6]	G	T	3.267e^-4	0.735	UTR_3_PRIME adp DOWNSTREAM lolal	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15160751	2R_15160751_DEL [dm3] 2R_19273246_DEL [dm6]	GAA	G	3.267e^-4	0.735	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	15160757	2R_15160757_INS [dm3] 2R_19273252_INS [dm6]	C	CC	3.267e^-4	0.735	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	4710333	2R_4710333_DEL [dm3] 2R_8822828_DEL [dm6]	AA	A	3.274e^-4	0.735	INTRON sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3416624	2L_3416624_SNP [dm3] 2L_3416624_SNP [dm6]	T	A	3.277e^-4	0.735	UPSTREAM CG31952 INTRON pgant2
3L	12063862	3L_12063862_SNP [dm3] 3L_12070762_SNP [dm6]	G	T	3.280e^-4	0.735	INTRON Sema-5c
2L	7471656	2L_7471656_SNP [dm3] 2L_7471656_SNP [dm6]	T	C	3.283e^-4	0.735	SYNONYMOUS_CODING CG6055 DOWNSTREAM Ziz
2R	8927242	2R_8927242_SNP [dm3] 2R_13039737_SNP [dm6]	G	A	3.283e^-4	0.735	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	13097245	2R_13097245_SNP [dm3] 2R_17209740_SNP [dm6]	T	G	3.283e^-4	0.735	INTERGENIC
3R	9393442	3R_9393442_SNP [dm3] 3R_13567720_SNP [dm6]	T	A	3.285e^-4	0.735	INTERGENIC
2L	8539830	2L_8539830_SNP [dm3] 2L_8539830_SNP [dm6]	C	T	3.290e^-4	0.735	INTRON CG17834
3L	10140942	3L_10140942_SNP [dm3] 3L_10147842_SNP [dm6]	C	A	3.294e^-4	0.735	UTR_3_PRIME dpr10
3R	26387922	3R_26387922_SNP [dm3] 3R_30562200_SNP [dm6]	C	T	3.296e^-4	0.735	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	18304849	3L_18304849_SNP [dm3] 3L_18311749_SNP [dm6]	C	A	3.296e^-4	0.735	INTERGENIC
3R	19615096	3R_19615096_SNP [dm3] 3R_23789374_SNP [dm6]	G	A	3.303e^-4	0.735	INTRON mbc
3R	3698149	3R_3698149_SNP [dm3] 3R_7872427_SNP [dm6]	T	C	3.303e^-4	0.735	INTRON CG17816
2R	10029875	2R_10029875_SNP [dm3] 2R_14142370_SNP [dm6]	T	A	3.305e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
3R	9357974	3R_9357974_DEL [dm3] 3R_13532252_DEL [dm6]	AT	A	3.307e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3518668	2L_3518668_SNP [dm3] 2L_3518668_SNP [dm6]	G	T	3.308e^-4	0.735	SYNONYMOUS_CODING CG3213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9796438	3R_9796438_SNP [dm3] 3R_13970716_SNP [dm6]	T	A	3.314e^-4	0.735	INTRON rdx	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	24824602	3R_24824602_SNP [dm3] 3R_28998880_SNP [dm6]	T	C	3.315e^-4	0.735	INTRON wat
2R	16297164	2R_16297164_SNP [dm3] 2R_20409659_SNP [dm6]	C	G	3.316e^-4	0.735	INTERGENIC
X	2967770	X_2967770_SNP [dm3] X_3073737_SNP [dm6]	C	A	3.328e^-4	0.735	INTRON kirre
3L	20704905	3L_20704905_SNP [dm3] 3L_20711805_SNP [dm6]	T	G	3.332e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	3292453	2L_3292453_SNP [dm3] 2L_3292453_SNP [dm6]	C	T	3.336e^-4	0.735	SPLICE_SITE_REGION CG9664 UTR_3_PRIME CG9664 INTRON CG9664	TF binding site mE1_TFBS_cad
2L	8604840	2L_8604840_SNP [dm3] 2L_8604840_SNP [dm6]	G	C	3.337e^-4	0.735	INTRON Sema-1a
2R	16865889	2R_16865889_SNP [dm3] 2R_20978384_SNP [dm6]	G	C	3.340e^-4	0.735	UTR_5_PRIME CG15650 UPSTREAM CG9313 & 1 other DOWNSTREAM CG9344
3L	17172649	3L_17172649_INS [dm3] 3L_17179549_INS [dm6]	A	AA	3.347e^-4	0.735	INTRON Rbp6
2R	15552352	2R_15552352_SNP [dm3] 2R_19664847_SNP [dm6]	C	T	3.353e^-4	0.735	DOWNSTREAM hrg INTRON hrg
2L	16243670	2L_16243670_SNP [dm3] 2L_16243670_SNP [dm6]	T	A	3.355e^-4	0.735	SYNONYMOUS_CODING CG42818
3L	1354828	3L_1354828_SNP [dm3] 3L_1354828_SNP [dm6]	A	G	3.356e^-4	0.735	INTRON Ptp61F
X	12237515	X_12237515_SNP [dm3] X_12343482_SNP [dm6]	C	G	3.360e^-4	0.735	INTERGENIC
3L	14338872	3L_14338872_SNP [dm3] 3L_14345772_SNP [dm6]	A	C	3.360e^-4	0.735	INTRON fz
3R	14101375	3R_14101375_SNP [dm3] 3R_18275653_SNP [dm6]	C	T	3.368e^-4	0.735	INTRON eIF-1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15997846	3R_15997846_SNP [dm3] 3R_20172124_SNP [dm6]	C	T	3.369e^-4	0.735	INTRON CG5023
2L	9098562	2L_9098562_SNP [dm3] 2L_9098562_SNP [dm6]	C	A	3.378e^-4	0.735	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
2R	10028647	2R_10028647_INS [dm3] 2R_14141142_INS [dm6]	T	TTA	3.380e^-4	0.735	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	3495009	2L_3495009_SNP [dm3] 2L_3495009_SNP [dm6]	T	G	3.380e^-4	0.735	INTRON tim
2L	5382237	2L_5382237_SNP [dm3] 2L_5382237_SNP [dm6]	T	C	3.389e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8546657	2R_8546657_SNP [dm3] 2R_12659152_SNP [dm6]	A	G	3.397e^-4	0.735	NON_SYNONYMOUS_CODING CG8646 DOWNSTREAM nemy	TF binding site mE1_TFBS_cad
2L	1245850	2L_1245850_SNP [dm3] 2L_1245850_SNP [dm6]	A	C	3.397e^-4	0.735	INTERGENIC
3L	2899315	3L_2899315_SNP [dm3] 3L_2899315_SNP [dm6]	C	T	3.407e^-4	0.735	INTRON Shab
3L	10948604	3L_10948604_SNP [dm3] 3L_10955504_SNP [dm6]	C	T	3.412e^-4	0.735	INTERGENIC
2L	12365811	2L_12365811_SNP [dm3] 2L_12365811_SNP [dm6]	A	G	3.419e^-4	0.735	UPSTREAM bru-2 INTRON bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	22790989	3R_22790989_SNP [dm3] 3R_26965267_SNP [dm6]	C	A	3.422e^-4	0.735	NON_SYNONYMOUS_CODING Gr97a UPSTREAM Tsp97E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	11503981	2R_11503981_SNP [dm3] 2R_15616476_SNP [dm6]	G	A	3.424e^-4	0.735	INTRON CG42524
2R	15205290	2R_15205290_SNP [dm3] 2R_19317785_SNP [dm6]	T	C	3.424e^-4	0.735	INTRON Rgk1
2R	16160717	2R_16160717_SNP [dm3] 2R_20273212_SNP [dm6]	G	A	3.424e^-4	0.735	INTRON CG10444	TF binding site mE1_TFBS_cad
2R	15086523	2R_15086523_SNP [dm3] 2R_19199018_SNP [dm6]	G	C	3.426e^-4	0.735	INTRON hppy
2L	16191813	2L_16191813_SNP [dm3] 2L_16191813_SNP [dm6]	A	T	3.426e^-4	0.735	INTERGENIC
2L	10525796	2L_10525796_SNP [dm3] 2L_10525796_SNP [dm6]	C	T	3.429e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13778621	2R_13778621_SNP [dm3] 2R_17891116_SNP [dm6]	C	A	3.430e^-4	0.735	INTRON Elk
2R	14754311	2R_14754311_SNP [dm3] 2R_18866806_SNP [dm6]	G	A	3.432e^-4	0.735	UPSTREAM DptB DOWNSTREAM Dpt INTERGENIC
2R	15758531	2R_15758531_SNP [dm3] 2R_19871026_SNP [dm6]	A	T	3.432e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	18551182	2L_18551182_SNP [dm3] 2L_18551182_SNP [dm6]	A	T	3.434e^-4	0.735	INTRON Pde11
2R	6079855	2R_6079855_DEL [dm3] 2R_10192350_DEL [dm6]	GCGGAG	G	3.436e^-4	0.735	UTR_5_PRIME KCNQ	TF binding site mE1_TFBS_inv
2L	4052191	2L_4052191_SNP [dm3] 2L_4052191_SNP [dm6]	C	A	3.439e^-4	0.735	INTRON ed	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	18547471	2L_18547471_SNP [dm3] 2L_18547471_SNP [dm6]	G	A	3.451e^-4	0.735	INTRON Pde11
2L	18547479	2L_18547479_SNP [dm3] 2L_18547479_SNP [dm6]	C	A	3.451e^-4	0.735	INTRON Pde11
2L	19207516	2L_19207516_SNP [dm3] 2L_19207516_SNP [dm6]	A	C	3.453e^-4	0.735	INTRON drl
3L	17172641	3L_17172641_INS [dm3] 3L_17179541_INS [dm6]	A	AG	3.462e^-4	0.736	INTRON Rbp6
2R	13920115	2R_13920115_SNP [dm3] 2R_18032610_SNP [dm6]	T	A	3.471e^-4	0.736	INTERGENIC
3L	11591850	3L_11591850_SNP [dm3] 3L_11598750_SNP [dm6]	C	T	3.474e^-4	0.736	DOWNSTREAM CG14137 INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr
2L	10704084	2L_10704084_SNP [dm3] 2L_10704084_SNP [dm6]	A	G	3.475e^-4	0.736	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2
2L	15110146	2L_15110146_SNP [dm3] 2L_15110146_SNP [dm6]	C	G	3.485e^-4	0.737	NON_SYNONYMOUS_CODING CG15269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16074725	2R_16074725_SNP [dm3] 2R_20187220_SNP [dm6]	A	T	3.486e^-4	0.737	INTERGENIC
2L	8540521	2L_8540521_SNP [dm3] 2L_8540521_SNP [dm6]	G	A	3.511e^-4	0.741	NON_SYNONYMOUS_CODING CG17834	TF binding site BDTNP1_TFBS_twi
2L	15567605	2L_15567605_SNP [dm3] 2L_15567605_SNP [dm6]	G	T	3.512e^-4	0.741	INTRON kek3
2R	17068249	2R_17068249_SNP [dm3] 2R_21180744_SNP [dm6]	C	T	3.515e^-4	0.741	UPSTREAM tRNA:CR33539 INTRON Pu	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2541675	X_2541675_SNP [dm3] X_2647642_SNP [dm6]	T	C	3.521e^-4	0.741	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10848245	3L_10848245_DEL [dm3] 3L_10855145_DEL [dm6]	AACATGTAAAATACAAA...	A	3.524e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15553313	2R_15553313_SNP [dm3] 2R_19665808_SNP [dm6]	C	T	3.540e^-4	0.743	SYNONYMOUS_CODING hrg UTR_3_PRIME hrg	TF binding site BDTNP1_TFBS_dl
2R	11735301	2R_11735301_SNP [dm3] 2R_15847796_SNP [dm6]	A	G	3.549e^-4	0.743	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	9999056	3L_9999056_SNP [dm3] 3L_10005956_SNP [dm6]	A	C	3.554e^-4	0.743	INTRON dpr6
3R	25563221	3R_25563221_SNP [dm3] 3R_29737499_SNP [dm6]	T	A	3.560e^-4	0.743	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	3458990	2L_3458990_SNP [dm3] 2L_3458990_SNP [dm6]	C	T	3.560e^-4	0.743	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8238137	2L_8238137_SNP [dm3] 2L_8238137_SNP [dm6]	G	A	3.565e^-4	0.743	INTRON Pvr
2R	12866198	2R_12866198_SNP [dm3] 2R_16978693_SNP [dm6]	T	C	3.565e^-4	0.743	INTRON Cbp53E
2L	12620366	2L_12620366_SNP [dm3] 2L_12620366_SNP [dm6]	C	G	3.567e^-4	0.743	INTRON Ref2 & 1 other	TF binding site mE1_TFBS_sens
2L	1663233	2L_1663233_DEL [dm3] 2L_1663233_DEL [dm6]	TC	T	3.602e^-4	0.749	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9451467	3R_9451467_DEL [dm3] 3R_13625745_DEL [dm6]	TTAAGTAAATGAAATGTGTT...	T	3.605e^-4	0.749	INTERGENIC
3L	11852048	3L_11852048_SNP [dm3] 3L_11858948_SNP [dm6]	T	A	3.608e^-4	0.749	INTRON CG44837
3R	16077995	3R_16077995_DEL [dm3] 3R_20252273_DEL [dm6]	CCTACACAGCCGAAGTTCCT...	C	3.617e^-4	0.749	UPSTREAM cic INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2L	3501150	2L_3501150_SNP [dm3] 2L_3501150_SNP [dm6]	G	C	3.627e^-4	0.749	UTR_3_PRIME tim INTRON tim
3R	7248821	3R_7248821_SNP [dm3] 3R_11423099_SNP [dm6]	A	C	3.633e^-4	0.749	NON_SYNONYMOUS_CODING CG5270	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	20023979	3L_20023979_SNP [dm3] 3L_20030879_SNP [dm6]	G	A	3.639e^-4	0.749	INTERGENIC
2R	16710049	2R_16710049_SNP [dm3] 2R_20822544_SNP [dm6]	T	C	3.639e^-4	0.749	SYNONYMOUS_CODING insc
2R	19193146	2R_19193146_SNP [dm3] 2R_23305623_SNP [dm6]	A	C	3.640e^-4	0.749	INTERGENIC
3L	1199481	3L_1199481_SNP [dm3] 3L_1199481_SNP [dm6]	G	A	3.642e^-4	0.749	DOWNSTREAM Aplip1 INTERGENIC
3L	8691473	3L_8691473_SNP [dm3] 3L_8698373_SNP [dm6]	G	A	3.644e^-4	0.749	INTERGENIC
2R	13919968	2R_13919968_SNP [dm3] 2R_18032463_SNP [dm6]	G	A	3.648e^-4	0.749	INTERGENIC
2R	13919973	2R_13919973_SNP [dm3] 2R_18032468_SNP [dm6]	G	A	3.648e^-4	0.749	INTERGENIC
2R	3614659	2R_3614659_SNP [dm3] 2R_7727154_SNP [dm6]	A	G	3.659e^-4	0.75	UPSTREAM CG18812 INTRON CG18812
2L	15567393	2L_15567393_SNP [dm3] 2L_15567393_SNP [dm6]	T	A	3.665e^-4	0.75	INTRON kek3
2L	15567395	2L_15567395_SNP [dm3] 2L_15567395_SNP [dm6]	T	G	3.665e^-4	0.75	INTRON kek3
2R	7109454	2R_7109454_SNP [dm3] 2R_11221949_SNP [dm6]	A	C	3.670e^-4	0.75	UTR_3_PRIME Syx6 UPSTREAM CG7737
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	3.673e^-4	0.75	INTRON RhoGEF64C
3L	8725848	3L_8725848_SNP [dm3] 3L_8732748_SNP [dm6]	T	G	3.678e^-4	0.75	DOWNSTREAM Prm & 1 other INTERGENIC
2R	18015452	2R_18015452_SNP [dm3] 2R_22127947_SNP [dm6]	A	G	3.680e^-4	0.75	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad
2L	17230371	2L_17230371_SNP [dm3] 2L_17230371_SNP [dm6]	T	C	3.695e^-4	0.751	INTRON beat-IIIc
2L	16020520	2L_16020520_SNP [dm3] 2L_16020520_SNP [dm6]	G	A	3.696e^-4	0.751	INTRON beat-Ic
3R	17736170	3R_17736170_SNP [dm3] 3R_21910448_SNP [dm6]	C	G	3.696e^-4	0.751	INTERGENIC
2L	7336601	2L_7336601_DEL [dm3] 2L_7336601_DEL [dm6]	TGT	T	3.716e^-4	0.752	INTRON Wnt6
3L	14140502	3L_14140502_SNP [dm3] 3L_14147402_SNP [dm6]	G	T	3.723e^-4	0.752	INTERGENIC	regulatory region REDfly_CRMs
2R	15552450	2R_15552450_SNP [dm3] 2R_19664945_SNP [dm6]	G	C	3.724e^-4	0.752	DOWNSTREAM hrg INTRON hrg
3L	13245568	3L_13245568_SNP [dm3] 3L_13252468_SNP [dm6]	A	G	3.724e^-4	0.752	INTRON caps
3R	10290244	3R_10290244_SNP [dm3] 3R_14464522_SNP [dm6]	G	A	3.736e^-4	0.752	INTRON cv-c
2L	9706243	2L_9706243_SNP [dm3] 2L_9706243_SNP [dm6]	C	A	3.744e^-4	0.752	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	15026959	X_15026959_SNP [dm3] X_15132926_SNP [dm6]	T	A	3.745e^-4	0.752	INTRON drd
2R	4237870	2R_4237870_SNP [dm3] 2R_8350365_SNP [dm6]	A	T	3.746e^-4	0.752	INTRON pdm3
2R	13551476	2R_13551476_SNP [dm3] 2R_17663971_SNP [dm6]	G	A	3.746e^-4	0.752	INTRON CCHa1-R
3R	9406899	3R_9406899_SNP [dm3] 3R_13581177_SNP [dm6]	T	G	3.747e^-4	0.752	INTERGENIC
2R	13581569	2R_13581569_SNP [dm3] 2R_17694064_SNP [dm6]	T	G	3.754e^-4	0.752	INTRON swi2
2L	15108630	2L_15108630_SNP [dm3] 2L_15108630_SNP [dm6]	G	C	3.756e^-4	0.752	UPSTREAM CG15269 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18304661	3L_18304661_SNP [dm3] 3L_18311561_SNP [dm6]	T	C	3.756e^-4	0.752	INTERGENIC
3R	16534389	3R_16534389_SNP [dm3] 3R_20708667_SNP [dm6]	C	T	3.761e^-4	0.752	INTRON Oamb
2L	21304739	2L_21304739_SNP [dm3] 2L_21304739_SNP [dm6]	A	C	3.761e^-4	0.752	UPSTREAM Mio INTRON Mio
3R	11979951	3R_11979951_SNP [dm3] 3R_16154229_SNP [dm6]	G	C	3.770e^-4	0.753	UPSTREAM CG6006 INTERGENIC
2L	2308317	2L_2308317_SNP [dm3] 2L_2308317_SNP [dm6]	A	C	3.788e^-4	0.754	SYNONYMOUS_CODING CG16995 DOWNSTREAM CG9967
2L	8519679	2L_8519679_SNP [dm3] 2L_8519679_SNP [dm6]	T	C	3.795e^-4	0.754	UPSTREAM CG13091 DOWNSTREAM CG13090 INTERGENIC
2L	617998	2L_617998_SNP [dm3] 2L_617998_SNP [dm6]	C	T	3.800e^-4	0.754	INTERGENIC
3L	15697589	3L_15697589_SNP [dm3] 3L_15704489_SNP [dm6]	C	T	3.811e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13695954	2L_13695954_SNP [dm3] 2L_13695954_SNP [dm6]	C	T	3.814e^-4	0.754	INTRON CG31814
2L	2083952	2L_2083952_SNP [dm3] 2L_2083952_SNP [dm6]	T	G	3.815e^-4	0.754	INTRON dpr3 EXON CR44055
2R	6526015	2R_6526015_SNP [dm3] 2R_10638510_SNP [dm6]	G	T	3.832e^-4	0.754	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
2L	9834356	2L_9834356_SNP [dm3] 2L_9834356_SNP [dm6]	C	T	3.836e^-4	0.754	INTRON nAChRalpha6
3L	10832559	3L_10832559_SNP [dm3] 3L_10839459_SNP [dm6]	T	C	3.837e^-4	0.754	INTERGENIC
3R	7770487	3R_7770487_SNP [dm3] 3R_11944765_SNP [dm6]	A	G	3.837e^-4	0.754	INTRON Cad87A
2L	1232342	2L_1232342_SNP [dm3] 2L_1232342_SNP [dm6]	G	C	3.840e^-4	0.754	INTERGENIC
3R	9405702	3R_9405702_SNP [dm3] 3R_13579980_SNP [dm6]	T	C	3.845e^-4	0.754	INTERGENIC
2L	10547904	2L_10547904_SNP [dm3] 2L_10547904_SNP [dm6]	G	A	3.846e^-4	0.754	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	10547905	2L_10547905_SNP [dm3] 2L_10547905_SNP [dm6]	G	T	3.846e^-4	0.754	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	15552361	2R_15552361_SNP [dm3] 2R_19664856_SNP [dm6]	T	C	3.848e^-4	0.754	DOWNSTREAM hrg INTRON hrg
3R	13765205	3R_13765205_SNP [dm3] 3R_17939483_SNP [dm6]	C	T	3.851e^-4	0.754	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13765207	3R_13765207_SNP [dm3] 3R_17939485_SNP [dm6]	A	G	3.851e^-4	0.754	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14647754	3R_14647754_SNP [dm3] 3R_18822032_SNP [dm6]	G	C	3.855e^-4	0.754	INTRON CG18208
3L	4142811	3L_4142811_SNP [dm3] 3L_4142811_SNP [dm6]	T	G	3.859e^-4	0.754	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
2R	15768802	2R_15768802_SNP [dm3] 2R_19881297_SNP [dm6]	T	G	3.859e^-4	0.754	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	1235884	2L_1235884_SNP [dm3] 2L_1235884_SNP [dm6]	A	T	3.859e^-4	0.754	INTERGENIC
2L	19378743	2L_19378743_SNP [dm3] 2L_19378743_SNP [dm6]	A	G	3.864e^-4	0.754	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	5314100	2L_5314100_SNP [dm3] 2L_5314100_SNP [dm6]	C	A	3.872e^-4	0.755	INTRON CG14024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9432479	3R_9432479_DEL [dm3] 3R_13606757_DEL [dm6]	AATAATTTATGTTTGAAACT...	A	3.890e^-4	0.757	DOWNSTREAM CG9759 INTERGENIC
3R	18690241	3R_18690241_SNP [dm3] 3R_22864519_SNP [dm6]	G	T	3.892e^-4	0.757	INTERGENIC
2L	8540528	2L_8540528_SNP [dm3] 2L_8540528_SNP [dm6]	C	T	3.895e^-4	0.757	SYNONYMOUS_CODING CG17834	TF binding site BDTNP1_TFBS_twi
2L	8325093	2L_8325093_SNP [dm3] 2L_8325093_SNP [dm6]	G	A	3.901e^-4	0.757	UTR_5_PRIME CG7781
2R	11263968	2R_11263968_SNP [dm3] 2R_15376463_SNP [dm6]	A	G	3.909e^-4	0.758	UPSTREAM CR43105 DOWNSTREAM dup EXON CR43186	TF binding site BDTNP1_TFBS_hb
X	8952380	X_8952380_SNP [dm3] X_9058347_SNP [dm6]	G	A	3.919e^-4	0.759	INTRON CG15365	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15455143	3R_15455143_SNP [dm3] 3R_19629421_SNP [dm6]	C	T	3.927e^-4	0.759	INTRON CG6231	TF binding site mE1_TFBS_kn
3R	16498262	3R_16498262_SNP [dm3] 3R_20672540_SNP [dm6]	C	T	3.933e^-4	0.759	UTR_3_PRIME Cpr92F
3R	26084209	3R_26084209_SNP [dm3] 3R_30258487_SNP [dm6]	T	C	3.939e^-4	0.759	INTERGENIC
3L	14504723	3L_14504723_SNP [dm3] 3L_14511623_SNP [dm6]	G	A	3.945e^-4	0.759	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3505576	2L_3505576_SNP [dm3] 2L_3505576_SNP [dm6]	G	C	3.948e^-4	0.759	INTRON tim	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6054598	2R_6054598_SNP [dm3] 2R_10167093_SNP [dm6]	C	T	3.951e^-4	0.759	INTRON KCNQ
X	38030	X_38030_SNP [dm3] X_141643_SNP [dm6]	T	G	3.953e^-4	0.759	UPSTREAM tyn INTRON CR45473 EXON CR45473
2R	6080585	2R_6080585_SNP [dm3] 2R_10193080_SNP [dm6]	G	A	3.958e^-4	0.759	UPSTREAM KCNQ INTERGENIC	TF binding site mE1_TFBS_inv
2L	5885248	2L_5885248_SNP [dm3] 2L_5885248_SNP [dm6]	C	T	3.959e^-4	0.759	UPSTREAM Sfp26Ac & 1 other DOWNSTREAM CG44574 INTRON CG43185
2R	17465040	2R_17465040_INS [dm3] 2R_21577535_INS [dm6]	A	AGC	3.962e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7770341	3R_7770341_SNP [dm3] 3R_11944619_SNP [dm6]	C	G	3.974e^-4	0.759	INTRON Cad87A
2R	7775518	2R_7775518_SNP [dm3] 2R_11888013_SNP [dm6]	C	G	3.978e^-4	0.759	NON_SYNONYMOUS_CODING ERp60 DOWNSTREAM cuff
3L	12834230	3L_12834230_INS [dm3] 3L_12841130_INS [dm6]	G	GG	3.979e^-4	0.759	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	8926803	3L_8926803_SNP [dm3] 3L_8933703_SNP [dm6]	T	C	3.982e^-4	0.759	SYNONYMOUS_CODING CG43783
2R	14961233	2R_14961233_SNP [dm3] 2R_19073728_SNP [dm6]	C	G	3.985e^-4	0.759	INTRON 5-HT1A
3L	12641282	3L_12641282_DEL [dm3] 3L_12648182_DEL [dm6]	TACTTACTTGTTACTTACAC...	T	3.999e^-4	0.759	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
3L	8956183	3L_8956183_SNP [dm3] 3L_8963083_SNP [dm6]	C	T	4.000e^-4	0.759	SYNONYMOUS_CODING CG5660	TF binding site mE1_TFBS_sens
2L	15567131	2L_15567131_SNP [dm3] 2L_15567131_SNP [dm6]	A	G	4.001e^-4	0.759	INTRON kek3
3L	7731126	3L_7731126_SNP [dm3] 3L_7738026_SNP [dm6]	C	T	4.005e^-4	0.759	INTRON CG32373 & 1 other
3R	2788954	3R_2788954_DEL [dm3] 3R_6963232_DEL [dm6]	GG	G	4.006e^-4	0.759	INTRON Antp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13475832	X_13475832_SNP [dm3] X_13581799_SNP [dm6]	C	T	4.006e^-4	0.759	INTRON Tango13
X	18602994	X_18602994_SNP [dm3] X_18708961_SNP [dm6]	G	C	4.008e^-4	0.759	SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM Cyp308a1	TF binding site mE1_TFBS_sens
3R	11993037	3R_11993037_INS [dm3] 3R_16167315_INS [dm6]	A	AAACA	4.023e^-4	0.761	INTRON CG6006
2L	1063012	2L_1063012_SNP [dm3] 2L_1063012_SNP [dm6]	T	A	4.025e^-4	0.761	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4839089	X_4839089_SNP [dm3] X_4945056_SNP [dm6]	A	G	4.034e^-4	0.762	INTRON Ptp4E
2L	20013930	2L_20013930_INS [dm3] 2L_20013930_INS [dm6]	T	TAGTAGAAGAT...	4.040e^-4	0.762	INTRON CG43861
2L	20013932	2L_20013932_SNP [dm3] 2L_20013932_SNP [dm6]	C	T	4.040e^-4	0.762	INTRON CG43861
2L	5884118	2L_5884118_SNP [dm3] 2L_5884118_SNP [dm6]	G	A	4.045e^-4	0.762	SYNONYMOUS_CODING CG44574 UPSTREAM CG43185 DOWNSTREAM Sfp26Ac
2L	3500810	2L_3500810_DEL [dm3] 2L_3500810_DEL [dm6]	GG	G	4.048e^-4	0.762	DOWNSTREAM tim INTRON tim
2L	8504057	2L_8504057_SNP [dm3] 2L_8504057_SNP [dm6]	G	A	4.056e^-4	0.762	INTRON Dh31
3R	15594544	3R_15594544_SNP [dm3] 3R_19768822_SNP [dm6]	G	C	4.056e^-4	0.762	UTR_3_PRIME GluClalpha INTRON GluClalpha
2L	3297485	2L_3297485_SNP [dm3] 2L_3297485_SNP [dm6]	A	T	4.061e^-4	0.762	SYNONYMOUS_CODING CG9663

By genomic position
Variant impact
Gene name

Cuticul_7_C26_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results