DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.983e^-16)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	2.089e-13

Kruskal-Wallis test

Covariate	χ²	p-value	Significance

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2096 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	15013402	2L_15013402_SNP [dm3] 2L_15013402_SNP [dm6]	A	T	7.486e^-8	0.14	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13541077	2L_13541077_SNP [dm3] 2L_13541077_SNP [dm6]	T	C	4.180e^-7	0.392	DOWNSTREAM CG9263 INTRON B4 & 1 other	TF binding site mE1_TFBS_HSA
2L	13541073	2L_13541073_SNP [dm3] 2L_13541073_SNP [dm6]	A	T	9.659e^-7	0.604	DOWNSTREAM CG9263 INTRON B4 & 1 other	TF binding site mE1_TFBS_HSA
3R	12509672	3R_12509672_SNP [dm3] 3R_16683950_SNP [dm6]	T	C	1.565e^-6	0.661	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	7986830	2R_7986830_SNP [dm3] 2R_12099325_SNP [dm6]	A	G	2.146e^-6	0.661	INTRON jeb	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13647627	3R_13647627_SNP [dm3] 3R_17821905_SNP [dm6]	T	A	3.211e^-6	0.661	UTR_5_PRIME tinc INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	15881899	2L_15881899_SNP [dm3] 2L_15881899_SNP [dm6]	T	A	3.805e^-6	0.661	DOWNSTREAM CG44475 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	12502353	3R_12502353_SNP [dm3] 3R_16676631_SNP [dm6]	C	T	3.911e^-6	0.661	INTRON Ubx	TF binding site mE1_TFBS_cad
2L	15881902	2L_15881902_SNP [dm3] 2L_15881902_SNP [dm6]	A	G	4.849e^-6	0.661	DOWNSTREAM CG44475 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	13541089	2L_13541089_SNP [dm3] 2L_13541089_SNP [dm6]	C	T	5.021e^-6	0.661	DOWNSTREAM CG9263 INTRON B4 & 1 other	TF binding site mE1_TFBS_HSA
2L	4712572	2L_4712572_SNP [dm3] 2L_4712572_SNP [dm6]	A	G	5.265e^-6	0.661	INTRON CG34351
2L	15883347	2L_15883347_SNP [dm3] 2L_15883347_SNP [dm6]	T	C	5.885e^-6	0.661	UPSTREAM CG44475 INTERGENIC
3R	9053286	3R_9053286_SNP [dm3] 3R_13227564_SNP [dm6]	A	G	6.180e^-6	0.661	UTR_3_PRIME Ace DOWNSTREAM Ace INTRON Ace
2R	14536543	2R_14536543_SNP [dm3] 2R_18649038_SNP [dm6]	A	G	6.202e^-6	0.661	INTRON SP2637
3R	15458329	3R_15458329_SNP [dm3] 3R_19632607_SNP [dm6]	C	T	6.681e^-6	0.661	UTR_5_PRIME CG6231 DOWNSTREAM subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19609269	3R_19609269_SNP [dm3] 3R_23783547_SNP [dm6]	G	A	7.155e^-6	0.661	INTRON mbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	12509571	3R_12509571_SNP [dm3] 3R_16683849_SNP [dm6]	C	A	7.525e^-6	0.661	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	12859507	3R_12859507_SNP [dm3] 3R_17033785_SNP [dm6]	G	A	8.335e^-6	0.661	UTR_3_PRIME CG4009 DOWNSTREAM CG31268
2L	13541115	2L_13541115_SNP [dm3] 2L_13541115_SNP [dm6]	T	A	8.493e^-6	0.661	DOWNSTREAM CG9263 INTRON B4 & 1 other	TF binding site mE1_TFBS_HSA
3R	19208501	3R_19208501_SNP [dm3] 3R_23382779_SNP [dm6]	T	C	8.861e^-6	0.661	UTR_5_PRIME CG4393 INTRON CG4393
3R	12508877	3R_12508877_SNP [dm3] 3R_16683155_SNP [dm6]	A	C	9.020e^-6	0.661	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14860809	3R_14860809_SNP [dm3] 3R_19035087_SNP [dm6]	A	C	9.518e^-6	0.661	INTRON CG6026
2L	12924149	2L_12924149_SNP [dm3] 2L_12924149_SNP [dm6]	A	G	9.897e^-6	0.661	INTRON ACXA	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	12969093	2R_12969093_DEL [dm3] 2R_17081588_DEL [dm6]	TT	T	1.035e^-5	0.661	UTR_5_PRIME CG30460
3R	14860908	3R_14860908_SNP [dm3] 3R_19035186_SNP [dm6]	T	G	1.089e^-5	0.661	INTRON CG6026
2R	13789677	2R_13789677_SNP [dm3] 2R_17902172_SNP [dm6]	G	A	1.106e^-5	0.661	INTRON Elk
2L	2604839	2L_2604839_SNP [dm3] 2L_2604839_SNP [dm6]	G	C	1.121e^-5	0.661	INTERGENIC
2L	2693939	2L_2693939_SNP [dm3] 2L_2693939_SNP [dm6]	T	C	1.123e^-5	0.661	INTRON CG31690
2L	15336280	2L_15336280_INS [dm3] 2L_15336280_INS [dm6]	T	TGTTA	1.146e^-5	0.661	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12891472	3R_12891472_SNP [dm3] 3R_17065750_SNP [dm6]	T	A	1.150e^-5	0.661	INTRON Dad	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	5630919	2L_5630919_SNP [dm3] 2L_5630919_SNP [dm6]	G	A	1.159e^-5	0.661	DOWNSTREAM CR44822 INTRON CG31646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12501869	3R_12501869_SNP [dm3] 3R_16676147_SNP [dm6]	G	T	1.171e^-5	0.661	INTRON Ubx	TF binding site mE1_TFBS_cad
2L	15949393	2L_15949393_DEL [dm3] 2L_15949393_DEL [dm6]	ATAGTTTCA	A	1.198e^-5	0.661	INTRON beat-Ib
2L	8071858	2L_8071858_SNP [dm3] 2L_8071858_SNP [dm6]	C	T	1.233e^-5	0.661	UTR_3_PRIME MED20 UPSTREAM poe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9523155	3L_9523155_SNP [dm3] 3L_9530055_SNP [dm6]	A	G	1.253e^-5	0.661	SYNONYMOUS_CODING Or67a
X	20320580	X_20320580_SNP [dm3] X_20449553_SNP [dm6]	C	A	1.294e^-5	0.661	UTR_5_PRIME CG32506
3R	26251010	3R_26251010_SNP [dm3] 3R_30425288_SNP [dm6]	C	T	1.303e^-5	0.661	UPSTREAM CG15536 DOWNSTREAM CG2218 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3856843	2L_3856843_SNP [dm3] 2L_3856843_SNP [dm6]	G	A	1.340e^-5	0.661	EXON CR45450	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
2R	20184952	2R_20184952_SNP [dm3] 2R_24297429_SNP [dm6]	C	T	1.475e^-5	0.702	INTRON CG3394	TF binding site mE1_TFBS_chinmo
2L	3735421	2L_3735421_INS [dm3] 2L_3735421_INS [dm6]	T	TT	1.498e^-5	0.702	INTRON CG10019
2L	12928584	2L_12928584_SNP [dm3] 2L_12928584_SNP [dm6]	T	A	1.620e^-5	0.721	INTRON ACXE
2R	10607384	2R_10607384_SNP [dm3] 2R_14719879_SNP [dm6]	G	A	1.692e^-5	0.721	INTERGENIC
2L	2338755	2L_2338755_SNP [dm3] 2L_2338755_SNP [dm6]	T	C	1.750e^-5	0.721	INTRON CG9967 & 1 other
3L	4436839	3L_4436839_SNP [dm3] 3L_4436839_SNP [dm6]	T	C	1.775e^-5	0.721	UTR_5_PRIME CG15021 DOWNSTREAM nAChRbeta1	TF binding site mE1_TFBS_cad
2R	6357172	2R_6357172_SNP [dm3] 2R_10469667_SNP [dm6]	C	G	1.834e^-5	0.721	UTR_3_PRIME whd DOWNSTREAM CG11777
2R	20184413	2R_20184413_SNP [dm3] 2R_24296890_SNP [dm6]	G	T	1.853e^-5	0.721	NON_SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15107994	2R_15107994_SNP [dm3] 2R_19220489_SNP [dm6]	T	G	1.860e^-5	0.721	INTRON hppy
3L	16018928	3L_16018928_SNP [dm3] 3L_16025828_SNP [dm6]	T	G	1.887e^-5	0.721	INTRON Notum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	12896174	3R_12896174_SNP [dm3] 3R_17070452_SNP [dm6]	A	G	1.908e^-5	0.721	DOWNSTREAM Ns1 & 1 other INTERGENIC
2R	15107963	2R_15107963_SNP [dm3] 2R_19220458_SNP [dm6]	A	G	1.940e^-5	0.721	INTRON hppy
3R	14350273	3R_14350273_SNP [dm3] 3R_18524551_SNP [dm6]	C	G	1.971e^-5	0.721	INTRON fru
2R	15107996	2R_15107996_SNP [dm3] 2R_19220491_SNP [dm6]	A	G	1.998e^-5	0.721	INTRON hppy
3L	12716666	3L_12716666_SNP [dm3] 3L_12723566_SNP [dm6]	A	C	2.131e^-5	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12633680	3R_12633680_SNP [dm3] 3R_16807958_SNP [dm6]	G	C	2.252e^-5	0.748	UTR_3_PRIME abd-A
3L	12716676	3L_12716676_SNP [dm3] 3L_12723576_SNP [dm6]	G	A	2.262e^-5	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15883377	2L_15883377_SNP [dm3] 2L_15883377_SNP [dm6]	A	C	2.273e^-5	0.748	UPSTREAM CG44475 INTERGENIC
3L	12717223	3L_12717223_SNP [dm3] 3L_12724123_SNP [dm6]	T	G	2.288e^-5	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17614699	2L_17614699_DEL [dm3] 2L_17614699_DEL [dm6]	TTCGAATGTTTTGCCTTTTT...	T	2.333e^-5	0.748	INTERGENIC
2L	2914785	2L_2914785_SNP [dm3] 2L_2914785_SNP [dm6]	C	T	2.471e^-5	0.748	INTRON lilli
2L	2331592	2L_2331592_SNP [dm3] 2L_2331592_SNP [dm6]	C	T	2.482e^-5	0.748	INTRON CG9967 & 1 other
2L	7378036	2L_7378036_SNP [dm3] 2L_7378036_SNP [dm6]	A	G	2.509e^-5	0.748	DOWNSTREAM Wnt10 INTRON ninaC
3L	12878190	3L_12878190_SNP [dm3] 3L_12885090_SNP [dm6]	G	T	2.510e^-5	0.748	SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_inv
3R	13364021	3R_13364021_SNP [dm3] 3R_17538299_SNP [dm6]	A	G	2.512e^-5	0.748	NON_SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
2L	2331572	2L_2331572_SNP [dm3] 2L_2331572_SNP [dm6]	C	A	2.618e^-5	0.753	INTRON CG9967 & 1 other
3R	13170756	3R_13170756_SNP [dm3] 3R_17345034_SNP [dm6]	G	A	2.624e^-5	0.753	INTRON beat-IIa
2L	9491186	2L_9491186_INS [dm3] 2L_9491186_INS [dm6]	A	TTT	2.651e^-5	0.753	UTR_3_PRIME Gdi DOWNSTREAM Gdi
2L	751683	2L_751683_SNP [dm3] 2L_751683_SNP [dm6]	G	C	2.753e^-5	0.771	INTRON GABA-B-R3
2L	15883414	2L_15883414_SNP [dm3] 2L_15883414_SNP [dm6]	A	T	2.827e^-5	0.78	UPSTREAM CG44475 INTERGENIC
3R	12512612	3R_12512612_SNP [dm3] 3R_16686890_SNP [dm6]	A	T	2.951e^-5	0.797	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2338844	2L_2338844_SNP [dm3] 2L_2338844_SNP [dm6]	C	A	2.982e^-5	0.797	SYNONYMOUS_CODING eys INTRON CG9967
3L	3598641	3L_3598641_SNP [dm3] 3L_3598641_SNP [dm6]	T	G	3.075e^-5	0.797	INTRON Eip63E	TF binding site mE1_TFBS_cad
3R	13170887	3R_13170887_DEL [dm3] 3R_17345165_DEL [dm6]	CTAGAGGATAA...	C	3.084e^-5	0.797	INTRON beat-IIa
3R	26247669	3R_26247669_SNP [dm3] 3R_30421947_SNP [dm6]	G	A	3.104e^-5	0.797	SYNONYMOUS_CODING CG2217 UTR_5_PRIME CG42740	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8363041	2L_8363041_INS [dm3] 2L_8363041_INS [dm6]	T	TAT	3.206e^-5	0.797	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17552816	2R_17552816_SNP [dm3] 2R_21665311_SNP [dm6]	A	G	3.230e^-5	0.797	SYNONYMOUS_CODING CG42363 UTR_3_PRIME CG42362 UPSTREAM CG42364
2L	2338272	2L_2338272_SNP [dm3] 2L_2338272_SNP [dm6]	C	T	3.263e^-5	0.797	INTRON CG9967 & 1 other
3R	6692156	3R_6692156_SNP [dm3] 3R_10866434_SNP [dm6]	A	G	3.326e^-5	0.797	INTRON SelR
3R	13170746	3R_13170746_INS [dm3] 3R_17345024_INS [dm6]	G	GG	3.434e^-5	0.797	INTRON beat-IIa
3L	18745736	3L_18745736_SNP [dm3] 3L_18752636_SNP [dm6]	T	C	3.461e^-5	0.797	UTR_3_PRIME ftz-f1
X	18216351	X_18216351_SNP [dm3] X_18322318_SNP [dm6]	C	A	3.461e^-5	0.797	DOWNSTREAM CG6123 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25600401	3R_25600401_SNP [dm3] 3R_29774679_SNP [dm6]	C	T	3.463e^-5	0.797	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15458311	3R_15458311_SNP [dm3] 3R_19632589_SNP [dm6]	C	A	3.649e^-5	0.797	UTR_5_PRIME CG6231 DOWNSTREAM subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17240671	3R_17240671_SNP [dm3] 3R_21414949_SNP [dm6]	T	A	3.680e^-5	0.797	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	14675930	2L_14675930_SNP [dm3] 2L_14675930_SNP [dm6]	C	T	3.765e^-5	0.797	INTRON osp
2L	2337644	2L_2337644_SNP [dm3] 2L_2337644_SNP [dm6]	C	G	3.868e^-5	0.797	INTRON CG9967 & 1 other
2L	14675935	2L_14675935_SNP [dm3] 2L_14675935_SNP [dm6]	T	C	3.878e^-5	0.797	INTRON osp
3R	18814727	3R_18814727_SNP [dm3] 3R_22989005_SNP [dm6]	G	A	4.039e^-5	0.797	UPSTREAM Or94b DOWNSTREAM Or94a INTRON Nha2
2R	1137803	2R_1137803_SNP [dm3] 2R_5250298_SNP [dm6]	T	C	4.140e^-5	0.797	INTRON Nipped-A
3R	9163195	3R_9163195_SNP [dm3] 3R_13337473_SNP [dm6]	G	C	4.199e^-5	0.797	UPSTREAM PK2-R1 INTERGENIC
2R	15174933	2R_15174933_SNP [dm3] 2R_19287428_SNP [dm6]	A	T	4.239e^-5	0.797	UPSTREAM CG10474 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12872247	3R_12872247_SNP [dm3] 3R_17046525_SNP [dm6]	T	A	4.245e^-5	0.797	INTRON Patr-1
2L	12928644	2L_12928644_SNP [dm3] 2L_12928644_SNP [dm6]	G	A	4.279e^-5	0.797	SYNONYMOUS_CODING ACXE
X	10873491	X_10873491_DEL [dm3] X_10979458_DEL [dm6]	CAAAAATGGA	C	4.291e^-5	0.797	INTRON CG42339
2L	6982358	2L_6982358_SNP [dm3] 2L_6982358_SNP [dm6]	G	A	4.296e^-5	0.797	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14928006	2R_14928006_DEL [dm3] 2R_19040501_DEL [dm6]	GG	G	4.330e^-5	0.797	INTERGENIC
2L	15883369	2L_15883369_SNP [dm3] 2L_15883369_SNP [dm6]	T	A	4.417e^-5	0.797	UPSTREAM CG44475 INTERGENIC
3R	13934867	3R_13934867_SNP [dm3] 3R_18109145_SNP [dm6]	G	A	4.524e^-5	0.797	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
2L	15914696	2L_15914696_SNP [dm3] 2L_15914696_SNP [dm6]	C	T	4.603e^-5	0.797	INTRON beat-Ib
2L	8275998	2L_8275998_SNP [dm3] 2L_8275998_SNP [dm6]	G	A	4.676e^-5	0.797	INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14433858	2L_14433858_SNP [dm3] 2L_14433858_SNP [dm6]	A	G	4.695e^-5	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	12863785	3R_12863785_SNP [dm3] 3R_17038063_SNP [dm6]	G	A	4.704e^-5	0.797	SYNONYMOUS_CODING CG18213	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	19127380	3R_19127380_SNP [dm3] 3R_23301658_SNP [dm6]	C	T	4.708e^-5	0.797	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	26250884	3R_26250884_SNP [dm3] 3R_30425162_SNP [dm6]	C	T	4.763e^-5	0.797	UTR_5_PRIME CG15536 DOWNSTREAM CG2218 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5099659	3L_5099659_SNP [dm3] 3L_5099659_SNP [dm6]	G	T	4.773e^-5	0.797	EXON CR34047
3L	3532203	3L_3532203_DEL [dm3] 3L_3532203_DEL [dm6]	TATGGCACATT...	T	4.879e^-5	0.797	INTRON Eip63E
X	5059925	X_5059925_SNP [dm3] X_5165892_SNP [dm6]	A	T	4.894e^-5	0.797	INTRON rg & 1 other
2R	15108011	2R_15108011_SNP [dm3] 2R_19220506_SNP [dm6]	C	T	4.913e^-5	0.797	INTRON hppy
3L	9009925	3L_9009925_SNP [dm3] 3L_9016825_SNP [dm6]	G	A	4.925e^-5	0.797	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25597630	3R_25597630_SNP [dm3] 3R_29771908_SNP [dm6]	T	C	5.030e^-5	0.797	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11420025	2L_11420025_SNP [dm3] 2L_11420025_SNP [dm6]	T	C	5.094e^-5	0.797	INTERGENIC	TF binding site mE1_TFBS_sens
2L	9491145	2L_9491145_SNP [dm3] 2L_9491145_SNP [dm6]	A	T	5.110e^-5	0.797	DOWNSTREAM Gdi INTERGENIC
3R	12848235	3R_12848235_SNP [dm3] 3R_17022513_SNP [dm6]	T	C	5.152e^-5	0.797	INTRON Pxd
X	10447022	X_10447022_SNP [dm3] X_10552989_SNP [dm6]	T	C	5.464e^-5	0.797	INTRON spri
3R	18621749	3R_18621749_SNP [dm3] 3R_22796027_SNP [dm6]	C	G	5.507e^-5	0.797	INTERGENIC
2L	6249461	2L_6249461_SNP [dm3] 2L_6249461_SNP [dm6]	T	C	5.627e^-5	0.797	INTERGENIC	TF binding site mE1_TFBS_sens
3R	13934833	3R_13934833_INS [dm3] 3R_18109111_INS [dm6]	T	TC	5.632e^-5	0.797	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
3R	15622196	3R_15622196_SNP [dm3] 3R_19796474_SNP [dm6]	G	A	5.643e^-5	0.797	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12504801	2R_12504801_SNP [dm3] 2R_16617296_SNP [dm6]	A	G	5.685e^-5	0.797	UPSTREAM CG5065 INTRON CG5065
3L	10898012	3L_10898012_SNP [dm3] 3L_10904912_SNP [dm6]	G	A	5.844e^-5	0.797	INTERGENIC
2L	750573	2L_750573_SNP [dm3] 2L_750573_SNP [dm6]	T	C	5.890e^-5	0.797	UPSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14433833	2L_14433833_DEL [dm3] 2L_14433833_DEL [dm6]	ACAA	A	5.900e^-5	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	10725197	2L_10725197_SNP [dm3] 2L_10725197_SNP [dm6]	T	G	5.919e^-5	0.797	UPSTREAM CG6431 INTRON CG6431
3L	1362975	3L_1362975_SNP [dm3] 3L_1362975_SNP [dm6]	T	G	5.988e^-5	0.797	INTRON Ptp61F
3L	5099642	3L_5099642_SNP [dm3] 3L_5099642_SNP [dm6]	T	C	6.040e^-5	0.797	EXON CR34047
X	4792249	X_4792249_SNP [dm3] X_4898216_SNP [dm6]	T	A	6.040e^-5	0.797	INTRON CG42594
3R	15458332	3R_15458332_SNP [dm3] 3R_19632610_SNP [dm6]	A	G	6.074e^-5	0.797	UTR_5_PRIME CG6231 DOWNSTREAM subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18438407	2R_18438407_SNP [dm3] 2R_22550902_SNP [dm6]	T	C	6.088e^-5	0.797	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7760389	2L_7760389_SNP [dm3] 2L_7760389_SNP [dm6]	A	T	6.163e^-5	0.797	INTRON CG7196
3R	19208406	3R_19208406_SNP [dm3] 3R_23382684_SNP [dm6]	A	T	6.197e^-5	0.797	UTR_5_PRIME CG4393 INTRON CG4393
3R	12893320	3R_12893320_SNP [dm3] 3R_17067598_SNP [dm6]	T	G	6.204e^-5	0.797	INTRON Dad	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10898589	2R_10898589_SNP [dm3] 2R_15011084_SNP [dm6]	A	T	6.205e^-5	0.797	UPSTREAM hbs INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
2L	8499625	2L_8499625_SNP [dm3] 2L_8499625_SNP [dm6]	T	C	6.212e^-5	0.797	INTRON Dh31
2L	11424266	2L_11424266_SNP [dm3] 2L_11424266_SNP [dm6]	T	A	6.226e^-5	0.797	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15632382	3R_15632382_SNP [dm3] 3R_19806660_SNP [dm6]	C	T	6.241e^-5	0.797	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	14433862	2L_14433862_SNP [dm3] 2L_14433862_SNP [dm6]	T	C	6.309e^-5	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	11836410	2R_11836410_SNP [dm3] 2R_15948905_SNP [dm6]	G	T	6.379e^-5	0.797	NON_SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13170926	3R_13170926_SNP [dm3] 3R_17345204_SNP [dm6]	A	G	6.509e^-5	0.797	INTRON beat-IIa
X	22370049	X_22370049_SNP [dm3] X_22968213_SNP [dm6]	T	G	6.528e^-5	0.797	INTERGENIC
3R	12893634	3R_12893634_SNP [dm3] 3R_17067912_SNP [dm6]	G	A	6.587e^-5	0.797	INTRON Dad	TF binding site BDTNP1_TFBS_Med
X	13221530	X_13221530_SNP [dm3] X_13327497_SNP [dm6]	C	T	6.658e^-5	0.797	SYNONYMOUS_CODING IP3K2
2R	17355310	2R_17355310_SNP [dm3] 2R_21467805_SNP [dm6]	T	A	6.686e^-5	0.797	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5199063	3L_5199063_SNP [dm3] 3L_5205963_SNP [dm6]	C	T	6.722e^-5	0.797	INTRON shep
X	18165846	X_18165846_SNP [dm3] X_18271813_SNP [dm6]	T	C	6.767e^-5	0.797	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12928524	2L_12928524_SNP [dm3] 2L_12928524_SNP [dm6]	A	G	6.828e^-5	0.797	SYNONYMOUS_CODING ACXE
2R	6537499	2R_6537499_SNP [dm3] 2R_10649994_SNP [dm6]	C	T	6.964e^-5	0.797	DOWNSTREAM CG12934 INTERGENIC
3R	13934843	3R_13934843_SNP [dm3] 3R_18109121_SNP [dm6]	C	T	6.970e^-5	0.797	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
2R	13789679	2R_13789679_SNP [dm3] 2R_17902174_SNP [dm6]	C	T	7.005e^-5	0.797	INTRON Elk
X	10447031	X_10447031_SNP [dm3] X_10552998_SNP [dm6]	C	T	7.034e^-5	0.797	INTRON spri
2L	13684650	2L_13684650_SNP [dm3] 2L_13684650_SNP [dm6]	G	A	7.102e^-5	0.797	INTRON CG31814
3R	17240708	3R_17240708_SNP [dm3] 3R_21414986_SNP [dm6]	C	T	7.117e^-5	0.797	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	15915254	2L_15915254_SNP [dm3] 2L_15915254_SNP [dm6]	G	C	7.153e^-5	0.797	INTRON beat-Ib
2R	12969127	2R_12969127_SNP [dm3] 2R_17081622_SNP [dm6]	T	C	7.217e^-5	0.797	UTR_5_PRIME CG30460
3R	13934845	3R_13934845_SNP [dm3] 3R_18109123_SNP [dm6]	G	T	7.235e^-5	0.797	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
2L	2338652	2L_2338652_SNP [dm3] 2L_2338652_SNP [dm6]	G	C	7.304e^-5	0.797	INTRON CG9967 & 1 other
3L	10898029	3L_10898029_SNP [dm3] 3L_10904929_SNP [dm6]	C	A	7.325e^-5	0.797	INTERGENIC
2R	8170966	2R_8170966_SNP [dm3] 2R_12283461_SNP [dm6]	A	G	7.351e^-5	0.797	INTRON CG42700
3L	9611934	3L_9611934_INS [dm3] 3L_9618834_INS [dm6]	T	TCCTA	7.359e^-5	0.797	INTRON LanB2	TF binding site mE1_TFBS_cad
2L	14675956	2L_14675956_SNP [dm3] 2L_14675956_SNP [dm6]	C	G	7.369e^-5	0.797	INTRON osp
2R	5628951	2R_5628951_SNP [dm3] 2R_9741446_SNP [dm6]	G	T	7.390e^-5	0.797	INTRON sqa	TF binding site mE1_TFBS_inv
3R	12502561	3R_12502561_SNP [dm3] 3R_16676839_SNP [dm6]	A	T	7.426e^-5	0.797	INTRON Ubx	TF binding site mE1_TFBS_cad
3L	869264	3L_869264_SNP [dm3] 3L_869264_SNP [dm6]	T	G	7.429e^-5	0.797	NON_SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18412033	3R_18412033_SNP [dm3] 3R_22586311_SNP [dm6]	G	A	7.486e^-5	0.797	SYNONYMOUS_CODING btn DOWNSTREAM CG6937	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	1370138	3L_1370138_SNP [dm3] 3L_1370138_SNP [dm6]	A	T	7.530e^-5	0.797	UPSTREAM ru INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	16148452	X_16148452_SNP [dm3] X_16254419_SNP [dm6]	A	T	7.643e^-5	0.797	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13815721	3R_13815721_SNP [dm3] 3R_17989999_SNP [dm6]	G	A	7.658e^-5	0.797	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13883241	3R_13883241_SNP [dm3] 3R_18057519_SNP [dm6]	A	G	7.708e^-5	0.797	INTERGENIC
3R	22909280	3R_22909280_SNP [dm3] 3R_27083558_SNP [dm6]	G	A	7.797e^-5	0.797	SYNONYMOUS_CODING Cpr97Ea DOWNSTREAM CG14257	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18621800	3R_18621800_SNP [dm3] 3R_22796078_SNP [dm6]	T	C	7.859e^-5	0.797	INTERGENIC
2L	15013395	2L_15013395_SNP [dm3] 2L_15013395_SNP [dm6]	A	G	7.860e^-5	0.797	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6613655	X_6613655_SNP [dm3] X_6719622_SNP [dm6]	G	A	7.913e^-5	0.797	DOWNSTREAM CG3168 & 1 other INTERGENIC
3L	17177551	3L_17177551_SNP [dm3] 3L_17184451_SNP [dm6]	T	A	7.957e^-5	0.797	INTRON Rbp6
X	13244546	X_13244546_SNP [dm3] X_13350513_SNP [dm6]	G	C	8.089e^-5	0.797	INTERGENIC
3R	8754864	3R_8754864_DEL [dm3] 3R_12929142_DEL [dm6]	TA	T	8.122e^-5	0.797	INTRON beat-Vb
2L	3236932	2L_3236932_SNP [dm3] 2L_3236932_SNP [dm6]	A	C	8.234e^-5	0.797	INTERGENIC
2L	15914342	2L_15914342_SNP [dm3] 2L_15914342_SNP [dm6]	A	G	8.266e^-5	0.797	INTRON beat-Ib
3R	12950300	3R_12950300_SNP [dm3] 3R_17124578_SNP [dm6]	C	T	8.291e^-5	0.797	SYNONYMOUS_CODING CG45079 INTRON cher
2R	13638020	2R_13638020_SNP [dm3] 2R_17750515_SNP [dm6]	G	A	8.335e^-5	0.797	DOWNSTREAM CG10931 INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15914343	2L_15914343_SNP [dm3] 2L_15914343_SNP [dm6]	A	C	8.373e^-5	0.797	INTRON beat-Ib
3L	13586092	3L_13586092_SNP [dm3] 3L_13592992_SNP [dm6]	G	A	8.402e^-5	0.797	INTRON bru-3
2R	15385102	2R_15385102_SNP [dm3] 2R_19497597_SNP [dm6]	A	C	8.414e^-5	0.797	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19792740	2R_19792740_DEL [dm3] 2R_23905217_DEL [dm6]	GT	G	8.501e^-5	0.797	UTR_3_PRIME CG13562 & 1 other
X	15023726	X_15023726_SNP [dm3] X_15129693_SNP [dm6]	A	G	8.547e^-5	0.797	INTRON drd
3L	1626104	3L_1626104_SNP [dm3] 3L_1626104_SNP [dm6]	A	G	8.576e^-5	0.797	UTR_3_PRIME CG13928 UPSTREAM GC INTRON GC
3R	18621668	3R_18621668_SNP [dm3] 3R_22795946_SNP [dm6]	C	T	8.634e^-5	0.797	INTERGENIC
3R	18621678	3R_18621678_SNP [dm3] 3R_22795956_SNP [dm6]	T	A	8.634e^-5	0.797	INTERGENIC
2L	15102673	2L_15102673_SNP [dm3] 2L_15102673_SNP [dm6]	T	C	8.638e^-5	0.797	INTERGENIC
2L	11176608	2L_11176608_SNP [dm3] 2L_11176608_SNP [dm6]	A	G	8.664e^-5	0.797	INTRON Ca-beta
X	8050164	X_8050164_SNP [dm3] X_8156131_SNP [dm6]	C	T	8.677e^-5	0.797	SYNONYMOUS_CODING Traf6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9077527	2L_9077527_SNP [dm3] 2L_9077527_SNP [dm6]	T	G	8.710e^-5	0.797	NON_SYNONYMOUS_CODING CG12439
2R	3576606	2R_3576606_SNP [dm3] 2R_7689101_SNP [dm6]	A	T	8.785e^-5	0.797	INTRON CG1399
3L	6507241	3L_6507241_DEL [dm3] 3L_6514141_DEL [dm6]	GTGTACGACAA...	G	8.816e^-5	0.797	INTRON sfl
X	6710006	X_6710006_SNP [dm3] X_6815973_SNP [dm6]	T	C	8.824e^-5	0.797	SPLICE_SITE_REGION iav INTRON iav
3R	18621700	3R_18621700_SNP [dm3] 3R_22795978_SNP [dm6]	T	C	8.845e^-5	0.797	INTERGENIC
3R	12505179	3R_12505179_SNP [dm3] 3R_16679457_SNP [dm6]	A	T	8.957e^-5	0.797	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Kr
3R	15461009	3R_15461009_SNP [dm3] 3R_19635287_SNP [dm6]	A	G	8.997e^-5	0.797	SYNONYMOUS_CODING CG34138 INTRON subdued
3R	12898151	3R_12898151_SNP [dm3] 3R_17072429_SNP [dm6]	G	T	9.004e^-5	0.797	SYNONYMOUS_CODING Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9234676	2L_9234676_SNP [dm3] 2L_9234676_SNP [dm6]	A	T	9.081e^-5	0.797	INTRON tai	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10660598	2R_10660598_DEL [dm3] 2R_14773093_DEL [dm6]	AA	A	9.084e^-5	0.797	UTR_3_PRIME kn DOWNSTREAM BEAF-32
3R	13934846	3R_13934846_SNP [dm3] 3R_18109124_SNP [dm6]	T	C	9.086e^-5	0.797	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
3L	12382600	3L_12382600_SNP [dm3] 3L_12389500_SNP [dm6]	T	C	9.126e^-5	0.797	INTRON Ncc69
2L	13978785	2L_13978785_SNP [dm3] 2L_13978785_SNP [dm6]	G	A	9.186e^-5	0.797	INTRON Cyp28a5
2L	10575021	2L_10575021_SNP [dm3] 2L_10575021_SNP [dm6]	A	G	9.188e^-5	0.797	DOWNSTREAM w-cup INTRON Trim9
X	10447044	X_10447044_DEL [dm3] X_10553011_DEL [dm6]	GTT	A	9.215e^-5	0.797	INTRON spri
3R	22853766	3R_22853766_SNP [dm3] 3R_27028044_SNP [dm6]	T	G	9.295e^-5	0.797	NON_SYNONYMOUS_CODING RYa-R	TF binding site mE1_TFBS_cad
3L	7897111	3L_7897111_SNP [dm3] 3L_7904011_SNP [dm6]	C	T	9.360e^-5	0.797	UPSTREAM pbl INTRON pbl	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	11390346	2L_11390346_INS [dm3] 2L_11390346_INS [dm6]	C	CATC	9.385e^-5	0.797	EXON CR43681	regulatory region REDfly_CRMs
2L	15333755	2L_15333755_SNP [dm3] 2L_15333755_SNP [dm6]	C	T	9.406e^-5	0.797	UPSTREAM esg INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	5624982	2R_5624982_SNP [dm3] 2R_9737477_SNP [dm6]	T	C	9.470e^-5	0.797	INTRON sqa
3R	26587083	3R_26587083_SNP [dm3] 3R_30761361_SNP [dm6]	C	T	9.490e^-5	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19795100	2R_19795100_SNP [dm3] 2R_23907577_SNP [dm6]	A	G	9.574e^-5	0.797	UPSTREAM kcc & 1 other DOWNSTREAM CR44806 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10873479	X_10873479_DEL [dm3] X_10979446_DEL [dm6]	AA	A	9.623e^-5	0.797	INTRON CG42339
3L	3532194	3L_3532194_SNP [dm3] 3L_3532194_SNP [dm6]	A	G	9.644e^-5	0.797	INTRON Eip63E
3R	12896178	3R_12896178_SNP [dm3] 3R_17070456_SNP [dm6]	G	A	9.718e^-5	0.797	DOWNSTREAM Ns1 & 1 other INTERGENIC
3R	5079294	3R_5079294_SNP [dm3] 3R_9253572_SNP [dm6]	G	T	9.726e^-5	0.797	DOWNSTREAM St2 EXON CR16735
3R	14860552	3R_14860552_SNP [dm3] 3R_19034830_SNP [dm6]	C	T	9.754e^-5	0.797	INTRON CG6026
2L	3522171	2L_3522171_SNP [dm3] 2L_3522171_SNP [dm6]	A	G	9.786e^-5	0.797	SYNONYMOUS_CODING CG8851 DOWNSTREAM Sr-CIV	TF binding site mE1_TFBS_cad
3L	3959743	3L_3959743_SNP [dm3] 3L_3959743_SNP [dm6]	T	C	9.838e^-5	0.797	NON_SYNONYMOUS_CODING CG12605	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20349947	2R_20349947_SNP [dm3] 2R_24462424_SNP [dm6]	T	G	9.856e^-5	0.797	INTRON CG13579
2L	15037365	2L_15037365_SNP [dm3] 2L_15037365_SNP [dm6]	C	T	9.875e^-5	0.797	SYNONYMOUS_CODING yellow-c UTR_3_PRIME CIAPIN1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26587147	3R_26587147_SNP [dm3] 3R_30761425_SNP [dm6]	T	C	9.948e^-5	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17474783	2R_17474783_SNP [dm3] 2R_21587278_SNP [dm6]	A	T	9.968e^-5	0.797	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12501457	3R_12501457_SNP [dm3] 3R_16675735_SNP [dm6]	G	A	1.005e^-4	0.797	INTRON Ubx
3R	14860892	3R_14860892_SNP [dm3] 3R_19035170_SNP [dm6]	G	C	1.010e^-4	0.797	INTRON CG6026
2L	15914550	2L_15914550_SNP [dm3] 2L_15914550_SNP [dm6]	C	T	1.017e^-4	0.797	INTRON beat-Ib
2L	9127922	2L_9127922_SNP [dm3] 2L_9127922_SNP [dm6]	A	G	1.018e^-4	0.797	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10919630	2L_10919630_SNP [dm3] 2L_10919630_SNP [dm6]	G	C	1.024e^-4	0.797	INTRON dpr2
3R	20341109	3R_20341109_SNP [dm3] 3R_24515387_SNP [dm6]	C	A	1.027e^-4	0.797	UTR_5_PRIME CG13617 UPSTREAM CG13617 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	21500230	X_21500230_SNP [dm3] X_21629203_SNP [dm6]	T	A	1.030e^-4	0.797	UTR_5_PRIME DIP1 INTRON DIP1	TF binding site BDTNP1_TFBS_dl
2R	10946223	2R_10946223_SNP [dm3] 2R_15058718_SNP [dm6]	A	C	1.034e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14675931	2L_14675931_SNP [dm3] 2L_14675931_SNP [dm6]	G	T	1.035e^-4	0.797	INTRON osp
2L	8056606	2L_8056606_SNP [dm3] 2L_8056606_SNP [dm6]	A	G	1.036e^-4	0.797	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	8867607	3L_8867607_SNP [dm3] 3L_8874507_SNP [dm6]	G	T	1.042e^-4	0.797	INTRON dally
2L	8056098	2L_8056098_SNP [dm3] 2L_8056098_SNP [dm6]	C	A	1.049e^-4	0.797	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
2R	10924451	2R_10924451_SNP [dm3] 2R_15036946_SNP [dm6]	A	T	1.058e^-4	0.797	SYNONYMOUS_CODING hbs	TF binding site mE1_TFBS_chinmo
3L	19555421	3L_19555421_DEL [dm3] 3L_19562321_DEL [dm6]	CAAGCAGGC	C	1.061e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12717169	3L_12717169_SNP [dm3] 3L_12724069_SNP [dm6]	C	T	1.067e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15914339	2L_15914339_SNP [dm3] 2L_15914339_SNP [dm6]	T	C	1.072e^-4	0.797	INTRON beat-Ib
2L	2090096	2L_2090096_SNP [dm3] 2L_2090096_SNP [dm6]	A	T	1.074e^-4	0.797	INTRON dpr3	TF binding site mE1_TFBS_chinmo
2R	4206379	2R_4206379_SNP [dm3] 2R_8318874_SNP [dm6]	A	G	1.076e^-4	0.797	INTERGENIC
2L	11423683	2L_11423683_SNP [dm3] 2L_11423683_SNP [dm6]	A	G	1.091e^-4	0.797	INTERGENIC
2L	11868673	2L_11868673_SNP [dm3] 2L_11868673_SNP [dm6]	T	A	1.093e^-4	0.797	INTRON Pde1c
3R	13883293	3R_13883293_SNP [dm3] 3R_18057571_SNP [dm6]	A	T	1.100e^-4	0.797	INTERGENIC
2L	10707204	2L_10707204_SNP [dm3] 2L_10707204_SNP [dm6]	A	C	1.102e^-4	0.797	INTRON Lip2	TF binding site mE1_TFBS_inv
2R	17552807	2R_17552807_SNP [dm3] 2R_21665302_SNP [dm6]	C	T	1.103e^-4	0.797	SYNONYMOUS_CODING CG42363 UTR_3_PRIME CG42362 UPSTREAM CG42364
2L	8347751	2L_8347751_SNP [dm3] 2L_8347751_SNP [dm6]	T	A	1.104e^-4	0.797	INTRON CG7778
3R	13170749	3R_13170749_SNP [dm3] 3R_17345027_SNP [dm6]	C	T	1.111e^-4	0.797	INTRON beat-IIa
2R	15243617	2R_15243617_SNP [dm3] 2R_19356112_SNP [dm6]	G	A	1.114e^-4	0.797	INTRON Rgk1	TF binding site BDTNP1_TFBS_dl
2L	13541864	2L_13541864_SNP [dm3] 2L_13541864_SNP [dm6]	G	T	1.117e^-4	0.797	SYNONYMOUS_CODING CG9263 UPSTREAM CG16853 DOWNSTREAM CG16852 INTRON B4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	20877075	3R_20877075_SNP [dm3] 3R_25051353_SNP [dm6]	C	T	1.120e^-4	0.797	NON_SYNONYMOUS_CODING CG11791	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4227102	2R_4227102_SNP [dm3] 2R_8339597_SNP [dm6]	C	T	1.126e^-4	0.797	INTRON pdm3
2L	14433591	2L_14433591_SNP [dm3] 2L_14433591_SNP [dm6]	G	T	1.128e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1921376	3L_1921376_SNP [dm3] 3L_1921376_SNP [dm6]	G	A	1.130e^-4	0.797	UTR_5_PRIME Dbx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15022845	2L_15022845_INS [dm3] 2L_15022845_INS [dm6]	C	CGTACATAT	1.132e^-4	0.797	INTRON GABA-B-R1
3L	1363033	3L_1363033_SNP [dm3] 3L_1363033_SNP [dm6]	C	A	1.142e^-4	0.797	INTRON Ptp61F
2L	15013374	2L_15013374_SNP [dm3] 2L_15013374_SNP [dm6]	T	C	1.144e^-4	0.797	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12897707	3R_12897707_SNP [dm3] 3R_17071985_SNP [dm6]	G	C	1.145e^-4	0.797	SYNONYMOUS_CODING Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	13155786	2L_13155786_SNP [dm3] 2L_13155786_SNP [dm6]	T	C	1.150e^-4	0.797	INTERGENIC
2L	11373965	2L_11373965_SNP [dm3] 2L_11373965_SNP [dm6]	C	T	1.152e^-4	0.797	DOWNSTREAM salr INTERGENIC
3L	1502363	3L_1502363_DEL [dm3] 3L_1502363_DEL [dm6]	AA	A	1.153e^-4	0.797	UPSTREAM Psa DOWNSTREAM cue INTRON pUf68	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	16933126	2L_16933126_SNP [dm3] 2L_16933126_SNP [dm6]	A	T	1.155e^-4	0.797	INTERGENIC
2R	7135404	2R_7135404_DEL [dm3] 2R_11247899_DEL [dm6]	TAG	A	1.165e^-4	0.797	UPSTREAM CG34227 INTERGENIC
3R	14897210	3R_14897210_SNP [dm3] 3R_19071488_SNP [dm6]	C	T	1.170e^-4	0.797	INTRON cdi	TF binding site BDTNP1_TFBS_twi
2R	3769755	2R_3769755_DEL [dm3] 2R_7882250_DEL [dm6]	ATTTGCCCCGTA...	A	1.173e^-4	0.797	INTRON Dgk
2L	8346154	2L_8346154_SNP [dm3] 2L_8346154_SNP [dm6]	C	T	1.178e^-4	0.797	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18032300	2R_18032300_SNP [dm3] 2R_22144795_SNP [dm6]	G	A	1.181e^-4	0.797	INTRON a	TF binding site mE1_TFBS_HSA
2R	19652129	2R_19652129_SNP [dm3] 2R_23764606_SNP [dm6]	G	C	1.187e^-4	0.797	INTRON CG9850
3R	23143586	3R_23143586_SNP [dm3] 3R_27317864_SNP [dm6]	A	T	1.191e^-4	0.797	NON_SYNONYMOUS_CODING CG3339 UPSTREAM CR44287	TF binding site mE1_TFBS_chinmo
3L	17685402	3L_17685402_SNP [dm3] 3L_17692302_SNP [dm6]	A	T	1.194e^-4	0.797	INTRON Ccn
3R	14741082	3R_14741082_SNP [dm3] 3R_18915360_SNP [dm6]	A	G	1.200e^-4	0.797	START_GAINED Xrp1 UTR_5_PRIME Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	7153789	2L_7153789_SNP [dm3] 2L_7153789_SNP [dm6]	A	T	1.202e^-4	0.797	INTRON Pvf3
2L	9082549	2L_9082549_SNP [dm3] 2L_9082549_SNP [dm6]	C	A	1.205e^-4	0.797	INTERGENIC
3R	13934913	3R_13934913_SNP [dm3] 3R_18109191_SNP [dm6]	G	A	1.228e^-4	0.797	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
3R	26587078	3R_26587078_SNP [dm3] 3R_30761356_SNP [dm6]	A	G	1.229e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8170640	2R_8170640_DEL [dm3] 2R_12283135_DEL [dm6]	TGTATATATAT...	T	1.236e^-4	0.797	INTRON CG42700
2R	14182260	2R_14182260_SNP [dm3] 2R_18294755_SNP [dm6]	T	A	1.236e^-4	0.797	UPSTREAM CG18536 DOWNSTREAM CG14502 INTRON sbb	TF binding site mE1_TFBS_HSA
2R	15175015	2R_15175015_SNP [dm3] 2R_19287510_SNP [dm6]	C	A	1.237e^-4	0.797	UPSTREAM CG10474 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10898108	3L_10898108_SNP [dm3] 3L_10905008_SNP [dm6]	A	T	1.238e^-4	0.797	INTERGENIC
3L	9590110	3L_9590110_SNP [dm3] 3L_9597010_SNP [dm6]	A	T	1.239e^-4	0.797	UPSTREAM CG14177 DOWNSTREAM CG42673 INTERGENIC
3L	8772937	3L_8772937_SNP [dm3] 3L_8779837_SNP [dm6]	C	A	1.244e^-4	0.797	INTRON Fhos
3R	15633629	3R_15633629_SNP [dm3] 3R_19807907_SNP [dm6]	G	A	1.249e^-4	0.797	INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8690979	X_8690979_DEL [dm3] X_8796946_DEL [dm6]	CA	C	1.251e^-4	0.797	INTRON Lim1
3R	26587075	3R_26587075_SNP [dm3] 3R_30761353_SNP [dm6]	T	A	1.254e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9490997	2L_9490997_SNP [dm3] 2L_9490997_SNP [dm6]	T	G	1.257e^-4	0.797	DOWNSTREAM Gdi INTERGENIC
3L	1921358	3L_1921358_SNP [dm3] 3L_1921358_SNP [dm6]	G	A	1.263e^-4	0.797	UTR_5_PRIME Dbx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	7464143	2R_7464143_SNP [dm3] 2R_11576638_SNP [dm6]	A	T	1.270e^-4	0.797	DOWNSTREAM tou INTERGENIC
3L	8768469	3L_8768469_SNP [dm3] 3L_8775369_SNP [dm6]	T	C	1.271e^-4	0.797	INTRON Fhos
2L	9128842	2L_9128842_SNP [dm3] 2L_9128842_SNP [dm6]	C	A	1.273e^-4	0.797	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12880428	3L_12880428_SNP [dm3] 3L_12887328_SNP [dm6]	C	T	1.277e^-4	0.797	SYNONYMOUS_CODING CG14120
3R	12872244	3R_12872244_SNP [dm3] 3R_17046522_SNP [dm6]	T	G	1.282e^-4	0.797	INTRON Patr-1
3R	12872254	3R_12872254_SNP [dm3] 3R_17046532_SNP [dm6]	C	T	1.282e^-4	0.797	INTRON Patr-1
3R	12872262	3R_12872262_SNP [dm3] 3R_17046540_SNP [dm6]	C	T	1.282e^-4	0.797	INTRON Patr-1
2L	9487002	2L_9487002_SNP [dm3] 2L_9487002_SNP [dm6]	A	T	1.282e^-4	0.797	INTERGENIC
2R	14546992	2R_14546992_SNP [dm3] 2R_18659487_SNP [dm6]	G	A	1.298e^-4	0.797	SYNONYMOUS_CODING Gint3 UTR_3_PRIME CG42306	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12897470	3R_12897470_SNP [dm3] 3R_17071748_SNP [dm6]	G	A	1.299e^-4	0.797	SYNONYMOUS_CODING Ns1 UPSTREAM mRpS11	TF binding site mE1_TFBS_HSA
2L	6747920	2L_6747920_SNP [dm3] 2L_6747920_SNP [dm6]	C	G	1.305e^-4	0.797	UPSTREAM CG44271 INTRON CG11221
X	10873406	X_10873406_SNP [dm3] X_10979373_SNP [dm6]	C	T	1.327e^-4	0.797	INTRON CG42339
X	21499350	X_21499350_SNP [dm3] X_21628323_SNP [dm6]	T	G	1.331e^-4	0.797	INTRON DIP1
2L	7398363	2L_7398363_SNP [dm3] 2L_7398363_SNP [dm6]	T	A	1.337e^-4	0.797	UTR_5_PRIME CG5160
3R	11580337	3R_11580337_SNP [dm3] 3R_15754615_SNP [dm6]	C	G	1.337e^-4	0.797	INTERGENIC
2L	12378610	2L_12378610_SNP [dm3] 2L_12378610_SNP [dm6]	A	T	1.338e^-4	0.797	INTRON bru-2
2R	7942281	2R_7942281_SNP [dm3] 2R_12054776_SNP [dm6]	C	A	1.339e^-4	0.797	UPSTREAM Drep-3 DOWNSTREAM CG44314 INTRON CG44314
3R	9163182	3R_9163182_SNP [dm3] 3R_13337460_SNP [dm6]	T	C	1.344e^-4	0.797	UPSTREAM PK2-R1 INTERGENIC
2R	17659664	2R_17659664_SNP [dm3] 2R_21772159_SNP [dm6]	G	A	1.350e^-4	0.797	INTERGENIC
X	19159525	X_19159525_SNP [dm3] X_19265492_SNP [dm6]	G	A	1.354e^-4	0.797	INTRON Vav	TF binding site mE1_TFBS_HSA
2L	2694609	2L_2694609_SNP [dm3] 2L_2694609_SNP [dm6]	C	T	1.357e^-4	0.797	DOWNSTREAM CG15398 INTRON CG31690
3L	11541748	3L_11541748_SNP [dm3] 3L_11548648_SNP [dm6]	T	C	1.360e^-4	0.797	INTRON Mob2	TF binding site mE1_TFBS_inv
3R	12622558	3R_12622558_SNP [dm3] 3R_16796836_SNP [dm6]	C	T	1.360e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8227281	2L_8227281_SNP [dm3] 2L_8227281_SNP [dm6]	T	C	1.364e^-4	0.797	INTRON Pvr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13154961	2L_13154961_SNP [dm3] 2L_13154961_SNP [dm6]	G	A	1.365e^-4	0.797	INTERGENIC
2R	17355404	2R_17355404_INS [dm3] 2R_21467899_INS [dm6]	T	TTCCCAAAAAT...	1.379e^-4	0.797	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12859457	3R_12859457_SNP [dm3] 3R_17033735_SNP [dm6]	G	T	1.405e^-4	0.797	UTR_3_PRIME CG4009 DOWNSTREAM CG31268
2L	9487008	2L_9487008_SNP [dm3] 2L_9487008_SNP [dm6]	A	T	1.418e^-4	0.797	INTERGENIC
2L	7379282	2L_7379282_SNP [dm3] 2L_7379282_SNP [dm6]	T	C	1.419e^-4	0.797	SYNONYMOUS_CODING ninaC
2L	6982730	2L_6982730_SNP [dm3] 2L_6982730_SNP [dm6]	G	A	1.420e^-4	0.797	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17565871	3R_17565871_SNP [dm3] 3R_21740149_SNP [dm6]	T	C	1.421e^-4	0.797	UTR_5_PRIME CG5849	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3321336	2L_3321336_INS [dm3] 2L_3321336_INS [dm6]	T	TGTAT	1.423e^-4	0.797	INTRON CG8837	TF binding site mE1_TFBS_chinmo
3L	15257388	3L_15257388_SNP [dm3] 3L_15264288_SNP [dm6]	A	C	1.425e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10187783	3R_10187783_SNP [dm3] 3R_14362061_SNP [dm6]	C	T	1.427e^-4	0.797	UPSTREAM CG31320 INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13669646	3R_13669646_SNP [dm3] 3R_17843924_SNP [dm6]	A	T	1.428e^-4	0.797	INTRON tinc
2L	3735390	2L_3735390_SNP [dm3] 2L_3735390_SNP [dm6]	C	A	1.429e^-4	0.797	INTRON CG10019
3L	3362268	3L_3362268_SNP [dm3] 3L_3362268_SNP [dm6]	T	G	1.432e^-4	0.797	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	7925502	2R_7925502_SNP [dm3] 2R_12037997_SNP [dm6]	T	A	1.436e^-4	0.797	SYNONYMOUS_CODING 128up UPSTREAM CG43191	TF binding site mE1_TFBS_sens
2L	15143125	2L_15143125_SNP [dm3] 2L_15143125_SNP [dm6]	T	G	1.437e^-4	0.797	INTERGENIC
2L	8276139	2L_8276139_SNP [dm3] 2L_8276139_SNP [dm6]	G	A	1.445e^-4	0.797	INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA
3L	4518069	3L_4518069_SNP [dm3] 3L_4518069_SNP [dm6]	A	C	1.450e^-4	0.797	INTRON Tie
3L	7902487	3L_7902487_SNP [dm3] 3L_7909387_SNP [dm6]	A	C	1.456e^-4	0.797	UPSTREAM pbl INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	11867311	2L_11867311_SNP [dm3] 2L_11867311_SNP [dm6]	C	G	1.457e^-4	0.797	INTRON Pde1c
3L	11632900	3L_11632900_SNP [dm3] 3L_11639800_SNP [dm6]	A	G	1.461e^-4	0.797	INTRON CG32091
3R	12501783	3R_12501783_SNP [dm3] 3R_16676061_SNP [dm6]	T	A	1.463e^-4	0.797	INTRON Ubx	TF binding site mE1_TFBS_cad
2L	7379092	2L_7379092_SNP [dm3] 2L_7379092_SNP [dm6]	A	G	1.465e^-4	0.797	SYNONYMOUS_CODING ninaC
2R	4206383	2R_4206383_SNP [dm3] 2R_8318878_SNP [dm6]	T	A	1.477e^-4	0.797	INTERGENIC
3R	26616263	3R_26616263_DEL [dm3] 3R_30790541_DEL [dm6]	CTTTGC	C	1.490e^-4	0.797	UTR_3_PRIME wts
3R	10410451	3R_10410451_SNP [dm3] 3R_14584729_SNP [dm6]	C	T	1.492e^-4	0.797	INTRON stumps
3R	13934848	3R_13934848_SNP [dm3] 3R_18109126_SNP [dm6]	T	A	1.492e^-4	0.797	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
3R	13170934	3R_13170934_SNP [dm3] 3R_17345212_SNP [dm6]	A	T	1.494e^-4	0.797	INTRON beat-IIa
X	17203580	X_17203580_SNP [dm3] X_17309547_SNP [dm6]	A	T	1.496e^-4	0.797	INTERGENIC
2L	16791183	2L_16791183_SNP [dm3] 2L_16791183_SNP [dm6]	G	A	1.502e^-4	0.797	UPSTREAM CG17928 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3L	2293181	3L_2293181_SNP [dm3] 3L_2293181_SNP [dm6]	C	G	1.516e^-4	0.797	INTRON MsR2
2R	17355328	2R_17355328_DEL [dm3] 2R_21467823_DEL [dm6]	TTAAGCAAGGTGTTTAAGAT...	T	1.517e^-4	0.797	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355379	2R_17355379_SNP [dm3] 2R_21467874_SNP [dm6]	T	C	1.517e^-4	0.797	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355385	2R_17355385_DEL [dm3] 2R_21467880_DEL [dm6]	AT	G	1.517e^-4	0.797	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355390	2R_17355390_SNP [dm3] 2R_21467885_SNP [dm6]	T	A	1.517e^-4	0.797	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355391	2R_17355391_SNP [dm3] 2R_21467886_SNP [dm6]	C	A	1.517e^-4	0.797	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355414	2R_17355414_DEL [dm3] 2R_21467909_DEL [dm6]	TTTCC	T	1.517e^-4	0.797	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355421	2R_17355421_SNP [dm3] 2R_21467916_SNP [dm6]	A	T	1.517e^-4	0.797	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355438	2R_17355438_MNP [dm3] 2R_21467933_MNP [dm6]	GCCG	ATGA	1.517e^-4	0.797	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8916853	3L_8916853_SNP [dm3] 3L_8923753_SNP [dm6]	G	A	1.518e^-4	0.797	INTRON Tsp66E
3L	1007912	3L_1007912_SNP [dm3] 3L_1007912_SNP [dm6]	G	A	1.530e^-4	0.797	UPSTREAM trio INTRON trio	TF binding site mE1_TFBS_inv
2L	6747906	2L_6747906_SNP [dm3] 2L_6747906_SNP [dm6]	A	G	1.542e^-4	0.797	UTR_5_PRIME CG44271 INTRON CG11221
2L	8283025	2L_8283025_DEL [dm3] 2L_8283025_DEL [dm6]	ACACTTGCCTCCGGGGCAGG...	A	1.546e^-4	0.797	INTRON Btk29A
3R	23143076	3R_23143076_DEL [dm3] 3R_27317354_DEL [dm6]	CATACAGCTTC...	GG	1.562e^-4	0.797	UPSTREAM CR44287 INTRON CG3339	TF binding site mE1_TFBS_chinmo
2L	16936454	2L_16936454_INS [dm3] 2L_16936454_INS [dm6]	T	TGTTGCATTGA...	1.563e^-4	0.797	INTERGENIC
3R	12695091	3R_12695091_SNP [dm3] 3R_16869369_SNP [dm6]	T	C	1.564e^-4	0.797	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	2327615	2L_2327615_SNP [dm3] 2L_2327615_SNP [dm6]	A	G	1.566e^-4	0.797	INTRON CG9967 & 1 other
3R	13170911	3R_13170911_SNP [dm3] 3R_17345189_SNP [dm6]	G	C	1.568e^-4	0.797	INTRON beat-IIa
3R	18362336	3R_18362336_SNP [dm3] 3R_22536614_SNP [dm6]	T	A	1.569e^-4	0.797	INTRON CG5326
X	21495332	X_21495332_SNP [dm3] X_21624305_SNP [dm6]	T	C	1.570e^-4	0.797	UPSTREAM CG32500 DOWNSTREAM DIP1 INTERGENIC	transposable element FlyBase
X	11802831	X_11802831_SNP [dm3] X_11908798_SNP [dm6]	C	G	1.581e^-4	0.797	INTRON pot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4569510	3L_4569510_SNP [dm3] 3L_4569510_SNP [dm6]	T	C	1.587e^-4	0.797	INTRON CG42540
3L	3959745	3L_3959745_SNP [dm3] 3L_3959745_SNP [dm6]	T	C	1.588e^-4	0.797	SYNONYMOUS_CODING CG12605	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15312279	3L_15312279_SNP [dm3] 3L_15319179_SNP [dm6]	T	A	1.593e^-4	0.797	INTERGENIC
2L	14434032	2L_14434032_INS [dm3] 2L_14434032_INS [dm6]	A	AG	1.602e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	12786779	3R_12786779_SNP [dm3] 3R_16961057_SNP [dm6]	A	G	1.603e^-4	0.797	UPSTREAM Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10898159	3L_10898159_SNP [dm3] 3L_10905059_SNP [dm6]	T	G	1.604e^-4	0.797	INTERGENIC
2L	9486710	2L_9486710_SNP [dm3] 2L_9486710_SNP [dm6]	C	T	1.605e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2914993	2L_2914993_SNP [dm3] 2L_2914993_SNP [dm6]	A	G	1.613e^-4	0.797	INTRON lilli
2L	15331072	2L_15331072_SNP [dm3] 2L_15331072_SNP [dm6]	T	A	1.615e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16355594	2R_16355594_SNP [dm3] 2R_20468089_SNP [dm6]	C	T	1.615e^-4	0.797	INTRON CG12484
3R	9060725	3R_9060725_SNP [dm3] 3R_13235003_SNP [dm6]	A	C	1.627e^-4	0.797	INTRON Ace
2L	6982388	2L_6982388_SNP [dm3] 2L_6982388_SNP [dm6]	C	T	1.630e^-4	0.797	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8280565	2L_8280565_SNP [dm3] 2L_8280565_SNP [dm6]	T	A	1.634e^-4	0.797	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	13872056	3L_13872056_SNP [dm3] 3L_13878956_SNP [dm6]	A	T	1.638e^-4	0.797	UPSTREAM CG13737 INTRON dysc
2L	9486356	2L_9486356_SNP [dm3] 2L_9486356_SNP [dm6]	C	T	1.638e^-4	0.797	INTERGENIC
2L	13155614	2L_13155614_SNP [dm3] 2L_13155614_SNP [dm6]	G	T	1.643e^-4	0.797	INTERGENIC
X	10447102	X_10447102_SNP [dm3] X_10553069_SNP [dm6]	C	A	1.645e^-4	0.797	INTRON spri
3R	25416677	3R_25416677_DEL [dm3] 3R_29590955_DEL [dm6]	TGT	T	1.650e^-4	0.797	UPSTREAM alph & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	3959742	3L_3959742_SNP [dm3] 3L_3959742_SNP [dm6]	T	C	1.654e^-4	0.797	SYNONYMOUS_CODING CG12605	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16429733	2L_16429733_SNP [dm3] 2L_16429733_SNP [dm6]	T	A	1.655e^-4	0.797	INTRON CG5888
2L	13682252	2L_13682252_SNP [dm3] 2L_13682252_SNP [dm6]	A	G	1.668e^-4	0.797	INTRON CG31814
2R	21138289	2R_21138289_SNP [dm3] 2R_25250766_SNP [dm6]	C	T	1.684e^-4	0.797	UPSTREAM CG33680 INTRON CG9380	transposable element FlyBase
2L	9671096	2L_9671096_SNP [dm3] 2L_9671096_SNP [dm6]	G	C	1.687e^-4	0.797	UPSTREAM CR44150 INTERGENIC
3R	12506461	3R_12506461_SNP [dm3] 3R_16680739_SNP [dm6]	C	A	1.687e^-4	0.797	INTRON Ubx	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	10898785	3L_10898785_SNP [dm3] 3L_10905685_SNP [dm6]	C	T	1.687e^-4	0.797	INTERGENIC
3R	9996739	3R_9996739_SNP [dm3] 3R_14171017_SNP [dm6]	G	A	1.689e^-4	0.797	UTR_3_PRIME Dop1R1
3L	10898041	3L_10898041_SNP [dm3] 3L_10904941_SNP [dm6]	T	A	1.694e^-4	0.797	INTERGENIC
3R	12522249	3R_12522249_SNP [dm3] 3R_16696527_SNP [dm6]	G	T	1.704e^-4	0.797	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8331587	2R_8331587_SNP [dm3] 2R_12444082_SNP [dm6]	C	A	1.706e^-4	0.797	INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	758274	2L_758274_SNP [dm3] 2L_758274_SNP [dm6]	A	T	1.715e^-4	0.797	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18386831	X_18386831_SNP [dm3] X_18492798_SNP [dm6]	C	T	1.716e^-4	0.797	UPSTREAM CG15044 DOWNSTREAM CG15043 INTERGENIC
2R	10660661	2R_10660661_SNP [dm3] 2R_14773156_SNP [dm6]	C	T	1.719e^-4	0.797	UTR_3_PRIME kn DOWNSTREAM BEAF-32
3R	12890838	3R_12890838_SNP [dm3] 3R_17065116_SNP [dm6]	C	T	1.720e^-4	0.797	INTRON Dad	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13673949	2R_13673949_SNP [dm3] 2R_17786444_SNP [dm6]	C	T	1.720e^-4	0.797	SYNONYMOUS_CODING aft
2R	15141180	2R_15141180_SNP [dm3] 2R_19253675_SNP [dm6]	A	T	1.720e^-4	0.797	UPSTREAM CG33453 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	12665508	3R_12665508_SNP [dm3] 3R_16839786_SNP [dm6]	G	A	1.723e^-4	0.797	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	12892254	3R_12892254_SNP [dm3] 3R_17066532_SNP [dm6]	C	A	1.728e^-4	0.797	INTRON Dad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	21277876	3R_21277876_INS [dm3] 3R_25452154_INS [dm6]	T	TT	1.737e^-4	0.797	INTRON Fur1
3R	18527039	3R_18527039_SNP [dm3] 3R_22701317_SNP [dm6]	C	T	1.741e^-4	0.797	UPSTREAM CG6972 INTRON CCAP
2R	7923425	2R_7923425_SNP [dm3] 2R_12035920_SNP [dm6]	C	G	1.742e^-4	0.797	UTR_3_PRIME CG8321 DOWNSTREAM CG43191
3R	14144836	3R_14144836_SNP [dm3] 3R_18319114_SNP [dm6]	A	T	1.748e^-4	0.797	INTRON CG31235
2L	9127919	2L_9127919_SNP [dm3] 2L_9127919_SNP [dm6]	G	A	1.749e^-4	0.797	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	15245594	2L_15245594_SNP [dm3] 2L_15245594_SNP [dm6]	G	A	1.752e^-4	0.797	SYNONYMOUS_CODING ZnT35C INTRON ZnT35C	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	15023772	X_15023772_SNP [dm3] X_15129739_SNP [dm6]	C	A	1.760e^-4	0.797	INTRON drd
3L	15959806	3L_15959806_SNP [dm3] 3L_15966706_SNP [dm6]	G	C	1.767e^-4	0.797	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	6710010	X_6710010_SNP [dm3] X_6815977_SNP [dm6]	A	C	1.770e^-4	0.797	SPLICE_SITE_REGION iav INTRON iav
2L	9019587	2L_9019587_SNP [dm3] 2L_9019587_SNP [dm6]	A	T	1.771e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13170921	3R_13170921_INS [dm3] 3R_17345199_INS [dm6]	T	TTT	1.788e^-4	0.797	INTRON beat-IIa
2R	21143258	2R_21143258_SNP [dm3] 2R_25255735_SNP [dm6]	C	G	1.791e^-4	0.797	UPSTREAM CG9380
2R	17474732	2R_17474732_SNP [dm3] 2R_21587227_SNP [dm6]	A	C	1.797e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8709810	2L_8709810_SNP [dm3] 2L_8709810_SNP [dm6]	C	G	1.810e^-4	0.797	UPSTREAM Hnf4 DOWNSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11537068	3L_11537068_SNP [dm3] 3L_11543968_SNP [dm6]	G	A	1.821e^-4	0.797	INTRON Mob2
2L	15320917	2L_15320917_SNP [dm3] 2L_15320917_SNP [dm6]	C	A	1.831e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna
3R	25416681	3R_25416681_MNP [dm3] 3R_29590959_MNP [dm6]	GTA	CCC	1.834e^-4	0.797	UPSTREAM alph & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	20961201	3R_20961201_DEL [dm3] 3R_25135479_DEL [dm6]	TCT	T	1.837e^-4	0.797	INTRON Bili
3R	22796305	3R_22796305_SNP [dm3] 3R_26970583_SNP [dm6]	T	A	1.838e^-4	0.797	INTRON CG5521	TF binding site mE1_TFBS_cad
3R	22773205	3R_22773205_DEL [dm3] 3R_26947483_DEL [dm6]	GA	G	1.841e^-4	0.797	UPSTREAM CG18472 & 1 other DOWNSTREAM tRNA:CR31070 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8062370	2L_8062370_SNP [dm3] 2L_8062370_SNP [dm6]	A	G	1.846e^-4	0.797	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_sens
2L	2338988	2L_2338988_SNP [dm3] 2L_2338988_SNP [dm6]	C	T	1.847e^-4	0.797	SYNONYMOUS_CODING eys INTRON CG9967
2R	4206380	2R_4206380_SNP [dm3] 2R_8318875_SNP [dm6]	G	A	1.850e^-4	0.797	INTERGENIC
2L	18378869	2L_18378869_SNP [dm3] 2L_18378869_SNP [dm6]	A	T	1.854e^-4	0.797	INTRON Fas3 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	3201851	2L_3201851_SNP [dm3] 2L_3201851_SNP [dm6]	G	C	1.870e^-4	0.797	INTERGENIC
3R	12897264	3R_12897264_SNP [dm3] 3R_17071542_SNP [dm6]	C	T	1.870e^-4	0.797	SYNONYMOUS_CODING Ns1
2L	14344300	2L_14344300_SNP [dm3] 2L_14344300_SNP [dm6]	A	C	1.872e^-4	0.797	NON_SYNONYMOUS_CODING CG33090
3R	10186416	3R_10186416_SNP [dm3] 3R_14360694_SNP [dm6]	A	G	1.873e^-4	0.797	SYNONYMOUS_CODING CG31320 INTRON NK7.1
3R	22848858	3R_22848858_SNP [dm3] 3R_27023136_SNP [dm6]	T	A	1.873e^-4	0.797	INTRON RYa-R & 1 other	TF binding site mE1_TFBS_chinmo
2R	7886371	2R_7886371_SNP [dm3] 2R_11998866_SNP [dm6]	A	G	1.878e^-4	0.797	INTERGENIC
3R	12506991	3R_12506991_DEL [dm3] 3R_16681269_DEL [dm6]	CT	C	1.886e^-4	0.797	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	8283061	2L_8283061_SNP [dm3] 2L_8283061_SNP [dm6]	G	A	1.887e^-4	0.797	INTRON Btk29A
2R	8346664	2R_8346664_SNP [dm3] 2R_12459159_SNP [dm6]	T	C	1.902e^-4	0.797	INTRON Lac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10717982	2L_10717982_INS [dm3] 2L_10717982_INS [dm6]	G	TTT	1.906e^-4	0.797	INTERGENIC
X	2517657	X_2517657_SNP [dm3] X_2623624_SNP [dm6]	A	G	1.908e^-4	0.797	SYNONYMOUS_CODING brv3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_ttk
3L	1216107	3L_1216107_SNP [dm3] 3L_1216107_SNP [dm6]	A	G	1.908e^-4	0.797	INTRON mwh	TF binding site BDTNP1_TFBS_prd mE1_TFBS_inv
3L	7905754	3L_7905754_SNP [dm3] 3L_7912654_SNP [dm6]	G	A	1.912e^-4	0.797	SYNONYMOUS_CODING CG8281 UPSTREAM pbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4294698	3R_4294698_SNP [dm3] 3R_8468976_SNP [dm6]	T	C	1.912e^-4	0.797	INTRON CG45263	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8754868	3R_8754868_SNP [dm3] 3R_12929146_SNP [dm6]	T	G	1.912e^-4	0.797	INTRON beat-Vb
X	2521597	X_2521597_SNP [dm3] X_2627564_SNP [dm6]	C	G	1.913e^-4	0.797	INTRON PI4KIIIalpha
2L	11866412	2L_11866412_SNP [dm3] 2L_11866412_SNP [dm6]	C	T	1.914e^-4	0.797	INTRON Pde1c
2L	13393811	2L_13393811_DEL [dm3] 2L_13393811_DEL [dm6]	CGTTTTGTC	C	1.914e^-4	0.797	UTR_3_PRIME RpL24 & 1 other DOWNSTREAM RpL24	TF binding site mE1_TFBS_cad
2R	14883324	2R_14883324_INS [dm3] 2R_18995819_INS [dm6]	T	TAAT	1.917e^-4	0.797	DOWNSTREAM snoRNA:abba-a INTRON tn
2L	15914293	2L_15914293_SNP [dm3] 2L_15914293_SNP [dm6]	G	C	1.923e^-4	0.797	INTRON beat-Ib
X	10446964	X_10446964_SNP [dm3] X_10552931_SNP [dm6]	C	T	1.924e^-4	0.797	INTRON spri
3R	13117806	3R_13117806_SNP [dm3] 3R_17292084_SNP [dm6]	G	A	1.928e^-4	0.797	INTERGENIC
2L	16791381	2L_16791381_SNP [dm3] 2L_16791381_SNP [dm6]	T	C	1.942e^-4	0.797	UPSTREAM CG17928 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3L	17690912	3L_17690912_SNP [dm3] 3L_17697812_SNP [dm6]	G	A	1.943e^-4	0.797	INTRON Ccn
2L	8281518	2L_8281518_SNP [dm3] 2L_8281518_SNP [dm6]	A	C	1.950e^-4	0.797	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12115195	2L_12115195_SNP [dm3] 2L_12115195_SNP [dm6]	A	G	1.953e^-4	0.797	INTRON CG17211
2R	18937803	2R_18937803_SNP [dm3] 2R_23050280_SNP [dm6]	G	A	1.959e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9486696	2L_9486696_SNP [dm3] 2L_9486696_SNP [dm6]	A	G	1.960e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	15013278	3L_15013278_SNP [dm3] 3L_15020178_SNP [dm6]	C	A	1.963e^-4	0.797	INTRON Sytbeta	TF binding site BDTNP1_TFBS_prd
2L	9372778	2L_9372778_SNP [dm3] 2L_9372778_SNP [dm6]	A	G	1.965e^-4	0.797	UTR_3_PRIME Shawl DOWNSTREAM Shawl INTRON CR43865
X	4420437	X_4420437_SNP [dm3] X_4526404_SNP [dm6]	G	T	1.986e^-4	0.797	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19478180	3R_19478180_SNP [dm3] 3R_23652458_SNP [dm6]	G	A	1.987e^-4	0.797	INTRON CG31145
3R	12839026	3R_12839026_DEL [dm3] 3R_17013304_DEL [dm6]	TTTCGCTTTCTGCGGCGGT...	T	1.997e^-4	0.797	DOWNSTREAM CG8907 INTERGENIC
2L	4712544	2L_4712544_SNP [dm3] 2L_4712544_SNP [dm6]	A	G	1.997e^-4	0.797	INTRON CG34351
2L	7394617	2L_7394617_SNP [dm3] 2L_7394617_SNP [dm6]	T	A	2.000e^-4	0.797	INTRON CG5160
2L	15408633	2L_15408633_SNP [dm3] 2L_15408633_SNP [dm6]	G	A	2.000e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	21374152	3R_21374152_SNP [dm3] 3R_25548430_SNP [dm6]	C	A	2.003e^-4	0.797	INTRON msi
3L	7993665	3L_7993665_DEL [dm3] 3L_8000565_DEL [dm6]	CT	C	2.008e^-4	0.797	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18063583	3R_18063583_SNP [dm3] 3R_22237861_SNP [dm6]	T	G	2.019e^-4	0.797	INTRON SKIP
2L	6588320	2L_6588320_SNP [dm3] 2L_6588320_SNP [dm6]	C	A	2.021e^-4	0.797	INTRON CG11319
X	16626291	X_16626291_SNP [dm3] X_16732258_SNP [dm6]	A	T	2.028e^-4	0.797	SYNONYMOUS_CODING TwdlX INTRON CG9634
2L	6982640	2L_6982640_SNP [dm3] 2L_6982640_SNP [dm6]	G	C	2.031e^-4	0.797	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12853527	3R_12853527_SNP [dm3] 3R_17027805_SNP [dm6]	T	A	2.032e^-4	0.797	SYNONYMOUS_CODING Pxd UPSTREAM CG5225
2R	16420196	2R_16420196_SNP [dm3] 2R_20532691_SNP [dm6]	C	G	2.051e^-4	0.797	UPSTREAM CG30154 EXON CR44651
3R	14815882	3R_14815882_SNP [dm3] 3R_18990160_SNP [dm6]	G	T	2.051e^-4	0.797	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15013692	2L_15013692_SNP [dm3] 2L_15013692_SNP [dm6]	G	C	2.054e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8894391	3L_8894391_SNP [dm3] 3L_8901291_SNP [dm6]	A	T	2.058e^-4	0.797	INTRON TrpA1
2L	13682249	2L_13682249_SNP [dm3] 2L_13682249_SNP [dm6]	G	C	2.062e^-4	0.797	INTRON CG31814
2L	9077725	2L_9077725_SNP [dm3] 2L_9077725_SNP [dm6]	G	A	2.062e^-4	0.797	NON_SYNONYMOUS_CODING CG12439
X	10873489	X_10873489_SNP [dm3] X_10979456_SNP [dm6]	C	T	2.066e^-4	0.797	INTRON CG42339
2L	11168993	2L_11168993_SNP [dm3] 2L_11168993_SNP [dm6]	T	C	2.067e^-4	0.797	INTRON Ca-beta	TF binding site mE1_TFBS_Trl
3R	14686525	3R_14686525_SNP [dm3] 3R_18860803_SNP [dm6]	C	T	2.072e^-4	0.797	INTERGENIC
X	22371018	X_22371018_SNP [dm3] X_22969182_SNP [dm6]	C	A	2.072e^-4	0.797	INTERGENIC	transposable element FlyBase
2L	16860246	2L_16860246_SNP [dm3] 2L_16860246_SNP [dm6]	G	T	2.075e^-4	0.797	NON_SYNONYMOUS_CODING CG6012	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	15013489	2L_15013489_SNP [dm3] 2L_15013489_SNP [dm6]	T	G	2.076e^-4	0.797	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13143334	2L_13143334_SNP [dm3] 2L_13143334_SNP [dm6]	C	T	2.077e^-4	0.797	NON_SYNONYMOUS_CODING CG16978 UPSTREAM CG9928
3R	8682524	3R_8682524_SNP [dm3] 3R_12856802_SNP [dm6]	A	G	2.077e^-4	0.797	INTRON CG10126
3R	18594172	3R_18594172_SNP [dm3] 3R_22768450_SNP [dm6]	G	A	2.078e^-4	0.797	NON_SYNONYMOUS_CODING CG43091 UPSTREAM CG13841 DOWNSTREAM CG43092 INTRON Usp12-46 & 1 other
X	18864946	X_18864946_SNP [dm3] X_18970913_SNP [dm6]	A	T	2.080e^-4	0.797	INTRON CG43759
2R	5557929	2R_5557929_SNP [dm3] 2R_9670424_SNP [dm6]	C	T	2.083e^-4	0.797	INTRON Mmp2
3L	15117465	3L_15117465_SNP [dm3] 3L_15124365_SNP [dm6]	C	T	2.085e^-4	0.797	INTRON Cep135 & 1 other
3R	4466021	3R_4466021_INS [dm3] 3R_8640299_INS [dm6]	G	GTGGAATACCCACATAAAGC...	2.089e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11392200	X_11392200_SNP [dm3] X_11498167_SNP [dm6]	T	G	2.090e^-4	0.797	INTRON Drak
2R	21077992	2R_21077992_SNP [dm3] 2R_25190469_SNP [dm6]	G	A	2.091e^-4	0.797	UPSTREAM CG9380 INTRON CG9380	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
3L	1502521	3L_1502521_SNP [dm3] 3L_1502521_SNP [dm6]	G	A	2.103e^-4	0.797	START_GAINED pUf68 UTR_5_PRIME pUf68 UPSTREAM Psa DOWNSTREAM cue	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu
3R	20453814	3R_20453814_SNP [dm3] 3R_24628092_SNP [dm6]	G	T	2.104e^-4	0.797	NON_SYNONYMOUS_CODING Wsck INTRON atl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10924514	2R_10924514_SNP [dm3] 2R_15037009_SNP [dm6]	C	A	2.107e^-4	0.797	SYNONYMOUS_CODING hbs	TF binding site mE1_TFBS_chinmo
3L	9786918	3L_9786918_SNP [dm3] 3L_9793818_SNP [dm6]	G	A	2.109e^-4	0.797	NON_SYNONYMOUS_CODING Zasp67
3R	12894168	3R_12894168_SNP [dm3] 3R_17068446_SNP [dm6]	G	A	2.111e^-4	0.797	INTRON Dad
3L	5303144	3L_5303144_SNP [dm3] 3L_5310044_SNP [dm6]	G	A	2.112e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3532162	3L_3532162_SNP [dm3] 3L_3532162_SNP [dm6]	A	G	2.115e^-4	0.797	INTRON Eip63E
2L	15487367	2L_15487367_SNP [dm3] 2L_15487367_SNP [dm6]	G	T	2.117e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12674179	3R_12674179_SNP [dm3] 3R_16848457_SNP [dm6]	G	T	2.128e^-4	0.797	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	13155638	2L_13155638_SNP [dm3] 2L_13155638_SNP [dm6]	G	A	2.135e^-4	0.797	INTERGENIC
3R	15442783	3R_15442783_SNP [dm3] 3R_19617061_SNP [dm6]	A	T	2.136e^-4	0.797	INTRON CG6231
3R	13872518	3R_13872518_SNP [dm3] 3R_18046796_SNP [dm6]	A	G	2.137e^-4	0.797	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5765427	X_5765427_SNP [dm3] X_5871394_SNP [dm6]	C	T	2.143e^-4	0.797	SYNONYMOUS_CODING GAA1	TF binding site mE1_TFBS_cad
2L	3242558	2L_3242558_SNP [dm3] 2L_3242558_SNP [dm6]	T	C	2.145e^-4	0.797	INTERGENIC
2L	3744182	2L_3744182_SNP [dm3] 2L_3744182_SNP [dm6]	T	C	2.153e^-4	0.797	INTRON CG10019
2L	944996	2L_944996_SNP [dm3] 2L_944996_SNP [dm6]	G	T	2.156e^-4	0.797	INTRON CG4341
3R	8682518	3R_8682518_SNP [dm3] 3R_12856796_SNP [dm6]	T	A	2.162e^-4	0.797	INTRON CG10126
2L	8276031	2L_8276031_SNP [dm3] 2L_8276031_SNP [dm6]	C	T	2.167e^-4	0.797	INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA
2R	8603928	2R_8603928_SNP [dm3] 2R_12716423_SNP [dm6]	T	G	2.169e^-4	0.797	INTRON CG42663
3R	26587093	3R_26587093_SNP [dm3] 3R_30761371_SNP [dm6]	G	A	2.170e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	21071010	2R_21071010_SNP [dm3] 2R_25183487_SNP [dm6]	A	T	2.172e^-4	0.797	DOWNSTREAM CG9380 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	18954987	2L_18954987_SNP [dm3] 2L_18954987_SNP [dm6]	G	A	2.172e^-4	0.797	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3R	13872527	3R_13872527_SNP [dm3] 3R_18046805_SNP [dm6]	G	A	2.172e^-4	0.797	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16234576	3R_16234576_SNP [dm3] 3R_20408854_SNP [dm6]	C	T	2.174e^-4	0.797	SYNONYMOUS_CODING CG10881 UPSTREAM CG4335 INTRON Gfrl
X	17203668	X_17203668_SNP [dm3] X_17309635_SNP [dm6]	C	T	2.175e^-4	0.797	INTERGENIC
2L	944998	2L_944998_SNP [dm3] 2L_944998_SNP [dm6]	A	T	2.176e^-4	0.797	INTRON CG4341
3R	12086769	3R_12086769_SNP [dm3] 3R_16261047_SNP [dm6]	T	C	2.179e^-4	0.797	DOWNSTREAM tara & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	12692563	3R_12692563_SNP [dm3] 3R_16866841_SNP [dm6]	C	T	2.182e^-4	0.797	INTRON iab-8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	5554146	2R_5554146_SNP [dm3] 2R_9666641_SNP [dm6]	C	G	2.187e^-4	0.797	INTRON Mmp2
X	8072215	X_8072215_SNP [dm3] X_8178182_SNP [dm6]	C	T	2.194e^-4	0.797	UPSTREAM slpr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14669912	2L_14669912_SNP [dm3] 2L_14669912_SNP [dm6]	G	T	2.203e^-4	0.797	INTRON osp
3R	24251306	3R_24251306_SNP [dm3] 3R_28425584_SNP [dm6]	A	G	2.207e^-4	0.797	INTRON beat-VI
X	22371019	X_22371019_SNP [dm3] X_22969183_SNP [dm6]	A	C	2.210e^-4	0.797	INTERGENIC	transposable element FlyBase
2R	15141138	2R_15141138_SNP [dm3] 2R_19253633_SNP [dm6]	A	T	2.221e^-4	0.797	UPSTREAM CG33453 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1912431	2L_1912431_SNP [dm3] 2L_1912431_SNP [dm6]	A	T	2.229e^-4	0.797	INTRON CG7337
2L	15321027	2L_15321027_DEL [dm3] 2L_15321027_DEL [dm6]	GAACCATGG	G	2.237e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22766624	3R_22766624_SNP [dm3] 3R_26940902_SNP [dm6]	A	C	2.249e^-4	0.797	INTRON sda
2L	8291251	2L_8291251_INS [dm3] 2L_8291251_INS [dm6]	A	ATGA	2.260e^-4	0.797	DOWNSTREAM tRNA:K5:29A INTRON Btk29A
X	8072452	X_8072452_SNP [dm3] X_8178419_SNP [dm6]	C	A	2.263e^-4	0.797	UPSTREAM sdt INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19247473	X_19247473_SNP [dm3] X_19353440_SNP [dm6]	G	T	2.269e^-4	0.797	UTR_5_PRIME kek5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	9491143	2L_9491143_SNP [dm3] 2L_9491143_SNP [dm6]	A	T	2.278e^-4	0.797	DOWNSTREAM Gdi INTERGENIC
X	5148957	X_5148957_DEL [dm3] X_5254924_DEL [dm6]	CCAAAATCC	C	2.283e^-4	0.797	DOWNSTREAM CG15465 & 1 other INTERGENIC
3R	18594024	3R_18594024_SNP [dm3] 3R_22768302_SNP [dm6]	T	G	2.286e^-4	0.797	SYNONYMOUS_CODING CG43091 UPSTREAM CG13841 DOWNSTREAM CG43092 INTRON Usp12-46 & 1 other
X	11802754	X_11802754_SNP [dm3] X_11908721_SNP [dm6]	C	T	2.287e^-4	0.797	SYNONYMOUS_CODING pot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11802769	X_11802769_SNP [dm3] X_11908736_SNP [dm6]	A	T	2.287e^-4	0.797	INTRON pot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15408603	2L_15408603_SNP [dm3] 2L_15408603_SNP [dm6]	T	C	2.290e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	2670543	X_2670543_INS [dm3] X_2776510_INS [dm6]	C	CGCCCC	2.291e^-4	0.797	INTRON kirre
3R	12086776	3R_12086776_SNP [dm3] 3R_16261054_SNP [dm6]	G	A	2.292e^-4	0.797	DOWNSTREAM tara & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3238774	2L_3238774_SNP [dm3] 2L_3238774_SNP [dm6]	G	T	2.294e^-4	0.797	INTERGENIC
3R	12894924	3R_12894924_SNP [dm3] 3R_17069202_SNP [dm6]	A	G	2.298e^-4	0.797	UTR_3_PRIME Dad	TF binding site BDTNP1_TFBS_twi
2L	15022838	2L_15022838_DEL [dm3] 2L_15022838_DEL [dm6]	ATAAAAC	A	2.299e^-4	0.797	INTRON GABA-B-R1
2L	10698717	2L_10698717_SNP [dm3] 2L_10698717_SNP [dm6]	T	C	2.303e^-4	0.797	UPSTREAM CG7300 DOWNSTREAM CR44181 & 1 other INTERGENIC
2R	14113771	2R_14113771_SNP [dm3] 2R_18226266_SNP [dm6]	G	T	2.306e^-4	0.797	UPSTREAM CR45310 INTERGENIC
3R	19908044	3R_19908044_SNP [dm3] 3R_24082322_SNP [dm6]	C	A	2.308e^-4	0.797	INTRON 4EHP
3L	9025043	3L_9025043_SNP [dm3] 3L_9031943_SNP [dm6]	G	T	2.315e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18099093	3L_18099093_SNP [dm3] 3L_18105993_SNP [dm6]	A	T	2.324e^-4	0.797	UTR_5_PRIME CG13698 UPSTREAM mRpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16148620	X_16148620_SNP [dm3] X_16254587_SNP [dm6]	C	T	2.333e^-4	0.797	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13604850	3R_13604850_SNP [dm3] 3R_17779128_SNP [dm6]	G	A	2.334e^-4	0.797	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
X	5146903	X_5146903_SNP [dm3] X_5252870_SNP [dm6]	A	C	2.335e^-4	0.797	UTR_3_PRIME CG15465 & 1 other	TF binding site mE1_TFBS_kn
3L	9016134	3L_9016134_SNP [dm3] 3L_9023034_SNP [dm6]	A	G	2.337e^-4	0.797	INTERGENIC
3R	2296229	3R_2296229_SNP [dm3] 3R_6470507_SNP [dm6]	C	G	2.338e^-4	0.797	NON_SYNONYMOUS_CODING Neurochondrin	TF binding site mE1_TFBS_cad
3L	17491634	3L_17491634_SNP [dm3] 3L_17498534_SNP [dm6]	G	A	2.360e^-4	0.797	INTRON Oatp74D
2R	4206384	2R_4206384_SNP [dm3] 2R_8318879_SNP [dm6]	A	G	2.364e^-4	0.797	INTERGENIC
2L	12378596	2L_12378596_SNP [dm3] 2L_12378596_SNP [dm6]	A	T	2.367e^-4	0.797	INTRON bru-2
2R	8342242	2R_8342242_INS [dm3] 2R_12454737_INS [dm6]	A	ACATGCAAATA...	2.369e^-4	0.797	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6371914	3L_6371914_SNP [dm3] 3L_6378814_SNP [dm6]	A	G	2.371e^-4	0.797	INTERGENIC
3L	18160222	3L_18160222_SNP [dm3] 3L_18167122_SNP [dm6]	G	A	2.382e^-4	0.797	DOWNSTREAM W INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10527805	2L_10527805_SNP [dm3] 2L_10527805_SNP [dm6]	A	T	2.383e^-4	0.797	STOP_GAINED Lip4	TF binding site BDTNP1_TFBS_dl
3L	7507273	3L_7507273_SNP [dm3] 3L_7514173_SNP [dm6]	C	T	2.383e^-4	0.797	SYNONYMOUS_CODING CG7546
2L	11176370	2L_11176370_SNP [dm3] 2L_11176370_SNP [dm6]	T	C	2.386e^-4	0.797	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl
3R	12723952	3R_12723952_SNP [dm3] 3R_16898230_SNP [dm6]	C	T	2.386e^-4	0.797	DOWNSTREAM CR43617 INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
X	21905317	X_21905317_SNP [dm3] X_22503481_SNP [dm6]	G	A	2.401e^-4	0.797	SYNONYMOUS_CODING l_1_G0196
3L	15117467	3L_15117467_SNP [dm3] 3L_15124367_SNP [dm6]	T	A	2.401e^-4	0.797	INTRON Cep135 & 1 other
3R	22848845	3R_22848845_SNP [dm3] 3R_27023123_SNP [dm6]	A	G	2.402e^-4	0.797	INTRON RYa-R & 1 other	TF binding site mE1_TFBS_chinmo
X	9009786	X_9009786_SNP [dm3] X_9115753_SNP [dm6]	C	T	2.404e^-4	0.797	INTRON AP-1gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5059845	X_5059845_DEL [dm3] X_5165812_DEL [dm6]	TA	T	2.404e^-4	0.797	INTRON rg & 1 other
3R	12650702	3R_12650702_SNP [dm3] 3R_16824980_SNP [dm6]	T	C	2.408e^-4	0.797	INTRON abd-A
3R	22786876	3R_22786876_SNP [dm3] 3R_26961154_SNP [dm6]	A	T	2.413e^-4	0.797	UTR_3_PRIME Tsp97E DOWNSTREAM Tsp97E
2L	17609225	2L_17609225_SNP [dm3] 2L_17609225_SNP [dm6]	T	G	2.415e^-4	0.797	INTERGENIC
2L	14409981	2L_14409981_SNP [dm3] 2L_14409981_SNP [dm6]	T	A	2.427e^-4	0.797	UPSTREAM elB EXON CR44733	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3L	5199272	3L_5199272_SNP [dm3] 3L_5206172_SNP [dm6]	G	T	2.431e^-4	0.797	INTRON shep
3L	5909414	3L_5909414_SNP [dm3] 3L_5916314_SNP [dm6]	A	G	2.435e^-4	0.797	INTRON CG13288
2R	17145100	2R_17145100_SNP [dm3] 2R_21257595_SNP [dm6]	A	C	2.438e^-4	0.797	UTR_5_PRIME Rgk3 INTRON Rgk3
2L	15331290	2L_15331290_SNP [dm3] 2L_15331290_SNP [dm6]	A	G	2.439e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17429283	2L_17429283_DEL [dm3] 2L_17429283_DEL [dm6]	CG	C	2.449e^-4	0.797	UPSTREAM CR44409 INTRON Dif
2L	8275815	2L_8275815_SNP [dm3] 2L_8275815_SNP [dm6]	G	A	2.458e^-4	0.797	INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7286950	3R_7286950_SNP [dm3] 3R_11461228_SNP [dm6]	A	T	2.474e^-4	0.797	UPSTREAM PGRP-LB INTRON CG17230
3R	12896165	3R_12896165_SNP [dm3] 3R_17070443_SNP [dm6]	G	T	2.478e^-4	0.797	DOWNSTREAM Ns1 & 1 other INTERGENIC
3R	13176412	3R_13176412_SNP [dm3] 3R_17350690_SNP [dm6]	A	G	2.478e^-4	0.797	INTRON beat-IIa
2L	752423	2L_752423_SNP [dm3] 2L_752423_SNP [dm6]	C	A	2.490e^-4	0.797	UPSTREAM GABA-B-R3 INTRON GABA-B-R3
3L	413163	3L_413163_SNP [dm3] 3L_413163_SNP [dm6]	C	G	2.491e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	12730756	3L_12730756_SNP [dm3] 3L_12737656_SNP [dm6]	C	T	2.498e^-4	0.797	NON_SYNONYMOUS_CODING Ptp69D	TF binding site mE1_TFBS_HSA
2L	7761289	2L_7761289_SNP [dm3] 2L_7761289_SNP [dm6]	G	A	2.508e^-4	0.797	INTRON CG7196
3R	23143659	3R_23143659_SNP [dm3] 3R_27317937_SNP [dm6]	C	A	2.509e^-4	0.797	SYNONYMOUS_CODING CG3339 UPSTREAM CR44287	TF binding site mE1_TFBS_chinmo
X	8402895	X_8402895_DEL [dm3] X_8508862_DEL [dm6]	TGCG	T	2.518e^-4	0.797	UPSTREAM CG33181 INTRON CG33181
3R	16873721	3R_16873721_SNP [dm3] 3R_21047999_SNP [dm6]	G	A	2.518e^-4	0.797	SYNONYMOUS_CODING CG7079 UPSTREAM CG31207
2L	10805235	2L_10805235_SNP [dm3] 2L_10805235_SNP [dm6]	A	C	2.521e^-4	0.797	INTRON Nos
2R	15327816	2R_15327816_SNP [dm3] 2R_19440311_SNP [dm6]	T	C	2.522e^-4	0.797	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_sens
2L	11418476	2L_11418476_SNP [dm3] 2L_11418476_SNP [dm6]	T	A	2.523e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7759925	2L_7759925_INS [dm3] 2L_7759925_INS [dm6]	T	TT	2.529e^-4	0.797	INTRON CG7196
2R	12306152	2R_12306152_SNP [dm3] 2R_16418647_SNP [dm6]	G	A	2.530e^-4	0.797	SYNONYMOUS_CODING Menl-1 UTR_5_PRIME Menl-2 INTRON Sema-2b	TF binding site mE1_TFBS_HSA
3R	5079577	3R_5079577_SNP [dm3] 3R_9253855_SNP [dm6]	T	C	2.531e^-4	0.797	DOWNSTREAM St2 EXON CR16735
X	8913482	X_8913482_SNP [dm3] X_9019449_SNP [dm6]	C	T	2.544e^-4	0.797	SYNONYMOUS_CODING rdgA INTRON CR43836
2L	5103259	2L_5103259_SNP [dm3] 2L_5103259_SNP [dm6]	A	G	2.548e^-4	0.797	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21495207	X_21495207_SNP [dm3] X_21624180_SNP [dm6]	A	G	2.549e^-4	0.797	UPSTREAM CG32500 DOWNSTREAM DIP1 INTERGENIC	transposable element FlyBase
3R	20961119	3R_20961119_SNP [dm3] 3R_25135397_SNP [dm6]	C	T	2.553e^-4	0.797	SYNONYMOUS_CODING Bili
X	22391974	X_22391974_SNP [dm3] X_22990138_SNP [dm6]	A	T	2.555e^-4	0.797	INTRON stnA & 1 other
X	10873449	X_10873449_SNP [dm3] X_10979416_SNP [dm6]	T	A	2.562e^-4	0.797	INTRON CG42339
3L	15113397	3L_15113397_SNP [dm3] 3L_15120297_SNP [dm6]	T	C	2.562e^-4	0.797	SYNONYMOUS_CODING CG16959 INTRON Cep135
2R	17474751	2R_17474751_SNP [dm3] 2R_21587246_SNP [dm6]	A	C	2.565e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10292364	3L_10292364_SNP [dm3] 3L_10299264_SNP [dm6]	G	A	2.567e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7368394	2L_7368394_DEL [dm3] 2L_7368394_DEL [dm6]	TTGGAT	T	2.568e^-4	0.797	INTRON Wnt10
2L	15408592	2L_15408592_SNP [dm3] 2L_15408592_SNP [dm6]	C	G	2.569e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	9163670	3R_9163670_SNP [dm3] 3R_13337948_SNP [dm6]	T	C	2.571e^-4	0.797	UPSTREAM PK2-R1 INTERGENIC
3L	17108200	3L_17108200_SNP [dm3] 3L_17115100_SNP [dm6]	C	T	2.575e^-4	0.797	INTRON Rbp6
3R	20453815	3R_20453815_SNP [dm3] 3R_24628093_SNP [dm6]	C	A	2.576e^-4	0.797	NON_SYNONYMOUS_CODING Wsck INTRON atl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	3197191	2L_3197191_SNP [dm3] 2L_3197191_SNP [dm6]	A	T	2.578e^-4	0.797	INTRON CG34393
2L	12115194	2L_12115194_SNP [dm3] 2L_12115194_SNP [dm6]	G	T	2.578e^-4	0.797	INTRON CG17211
2R	14622638	2R_14622638_SNP [dm3] 2R_18735133_SNP [dm6]	C	T	2.587e^-4	0.797	INTRON Hs3st-A
3L	10040638	3L_10040638_SNP [dm3] 3L_10047538_SNP [dm6]	T	G	2.591e^-4	0.797	INTRON dpr6
2L	14394234	2L_14394234_SNP [dm3] 2L_14394234_SNP [dm6]	C	A	2.593e^-4	0.797	INTRON elB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1391095	2L_1391095_SNP [dm3] 2L_1391095_SNP [dm6]	C	T	2.593e^-4	0.797	SYNONYMOUS_CODING lea	TF binding site mE1_TFBS_sens
3R	5077372	3R_5077372_SNP [dm3] 3R_9251650_SNP [dm6]	G	A	2.595e^-4	0.797	UPSTREAM St2 DOWNSTREAM CG8420 INTERGENIC
2R	7886372	2R_7886372_SNP [dm3] 2R_11998867_SNP [dm6]	G	A	2.598e^-4	0.797	INTERGENIC
X	10446787	X_10446787_SNP [dm3] X_10552754_SNP [dm6]	A	G	2.599e^-4	0.797	INTRON spri
2L	14892299	2L_14892299_SNP [dm3] 2L_14892299_SNP [dm6]	A	C	2.599e^-4	0.797	INTERGENIC
3R	17565866	3R_17565866_SNP [dm3] 3R_21740144_SNP [dm6]	T	C	2.617e^-4	0.797	UTR_5_PRIME CG5849	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26600651	3R_26600651_SNP [dm3] 3R_30774929_SNP [dm6]	A	G	2.617e^-4	0.797	INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	16247360	2L_16247360_SNP [dm3] 2L_16247360_SNP [dm6]	G	A	2.633e^-4	0.797	SYNONYMOUS_CODING PRL-1
3R	24256931	3R_24256931_SNP [dm3] 3R_28431209_SNP [dm6]	T	C	2.635e^-4	0.797	INTRON beat-VI
3L	5909423	3L_5909423_SNP [dm3] 3L_5916323_SNP [dm6]	G	T	2.637e^-4	0.797	INTRON CG13288
2L	9197729	2L_9197729_SNP [dm3] 2L_9197729_SNP [dm6]	G	C	2.638e^-4	0.797	INTRON tai
3R	19209195	3R_19209195_SNP [dm3] 3R_23383473_SNP [dm6]	A	G	2.638e^-4	0.797	UPSTREAM CG4393 INTRON CG4393
2L	18253891	2L_18253891_SNP [dm3] 2L_18253891_SNP [dm6]	G	A	2.639e^-4	0.797	INTRON CG42750
2L	18353658	2L_18353658_SNP [dm3] 2L_18353658_SNP [dm6]	A	T	2.642e^-4	0.797	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4224105	2R_4224105_SNP [dm3] 2R_8336600_SNP [dm6]	T	C	2.646e^-4	0.797	INTRON pdm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9025060	3L_9025060_SNP [dm3] 3L_9031960_SNP [dm6]	A	T	2.646e^-4	0.797	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15117470	3L_15117470_SNP [dm3] 3L_15124370_SNP [dm6]	A	C	2.653e^-4	0.797	INTRON Cep135 & 1 other
3R	9161521	3R_9161521_SNP [dm3] 3R_13335799_SNP [dm6]	G	C	2.664e^-4	0.797	INTERGENIC
3L	3534710	3L_3534710_SNP [dm3] 3L_3534710_SNP [dm6]	A	G	2.664e^-4	0.797	INTRON Eip63E
2R	4138548	2R_4138548_SNP [dm3] 2R_8251043_SNP [dm6]	G	A	2.674e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	14577910	2L_14577910_SNP [dm3] 2L_14577910_SNP [dm6]	A	G	2.676e^-4	0.797	DOWNSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16233760	3R_16233760_DEL [dm3] 3R_20408038_DEL [dm6]	AA	A	2.683e^-4	0.797	UPSTREAM CG10881 & 1 other INTRON Gfrl
2L	2122460	2L_2122460_SNP [dm3] 2L_2122460_SNP [dm6]	C	T	2.684e^-4	0.797	INTERGENIC
2L	11392167	2L_11392167_SNP [dm3] 2L_11392167_SNP [dm6]	C	T	2.684e^-4	0.797	INTRON CR43681	regulatory region REDfly_CRMs
3L	411950	3L_411950_SNP [dm3] 3L_411950_SNP [dm6]	T	C	2.684e^-4	0.797	INTERGENIC
3R	14154997	3R_14154997_SNP [dm3] 3R_18329275_SNP [dm6]	C	A	2.685e^-4	0.797	UPSTREAM CG31235 INTERGENIC
3L	5199271	3L_5199271_SNP [dm3] 3L_5206171_SNP [dm6]	G	A	2.687e^-4	0.797	INTRON shep
3L	15117472	3L_15117472_MNP [dm3] 3L_15124372_MNP [dm6]	GAGA	TGCT	2.688e^-4	0.797	INTRON Cep135 & 1 other
2R	7512774	2R_7512774_SNP [dm3] 2R_11625269_SNP [dm6]	G	A	2.690e^-4	0.797	UTR_5_PRIME CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27054989	3R_27054989_SNP [dm3] 3R_31229267_SNP [dm6]	A	G	2.706e^-4	0.8	UTR_3_PRIME CG12054 DOWNSTREAM CG12054	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	14861836	2L_14861836_SNP [dm3] 2L_14861836_SNP [dm6]	G	A	2.710e^-4	0.8	INTERGENIC
2L	13929538	2L_13929538_SNP [dm3] 2L_13929538_SNP [dm6]	G	A	2.713e^-4	0.8	DOWNSTREAM CG42711 INTRON Ance-3
2R	4727426	2R_4727426_SNP [dm3] 2R_8839921_SNP [dm6]	T	A	2.725e^-4	0.802	INTRON sns
2R	17900396	2R_17900396_SNP [dm3] 2R_22012891_SNP [dm6]	A	T	2.728e^-4	0.802	INTRON CG34370
2L	15348011	2L_15348011_SNP [dm3] 2L_15348011_SNP [dm6]	G	A	2.732e^-4	0.802	INTERGENIC
X	2517678	X_2517678_SNP [dm3] X_2623645_SNP [dm6]	A	G	2.749e^-4	0.804	SYNONYMOUS_CODING brv3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_ttk
2L	13923232	2L_13923232_SNP [dm3] 2L_13923232_SNP [dm6]	A	C	2.750e^-4	0.804	INTRON Ance-3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12501703	3R_12501703_SNP [dm3] 3R_16675981_SNP [dm6]	T	C	2.750e^-4	0.804	INTRON Ubx
2R	4206398	2R_4206398_SNP [dm3] 2R_8318893_SNP [dm6]	C	A	2.758e^-4	0.805	INTERGENIC
2R	12896092	2R_12896092_SNP [dm3] 2R_17008587_SNP [dm6]	C	T	2.767e^-4	0.806	INTRON Ehbp1
3R	4476576	3R_4476576_SNP [dm3] 3R_8650854_SNP [dm6]	T	C	2.772e^-4	0.806	UPSTREAM CG8021 & 1 other DOWNSTREAM Dhod INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	14154692	3R_14154692_SNP [dm3] 3R_18328970_SNP [dm6]	C	T	2.792e^-4	0.806	UPSTREAM CG31235 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16622973	2L_16622973_SNP [dm3] 2L_16622973_SNP [dm6]	G	A	2.793e^-4	0.806	INTRON CG42389
3L	6065042	3L_6065042_SNP [dm3] 3L_6071942_SNP [dm6]	C	T	2.795e^-4	0.806	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC
2R	11045764	2R_11045764_SNP [dm3] 2R_15158259_SNP [dm6]	G	T	2.796e^-4	0.806	DOWNSTREAM CR43831 INTRON igl
3R	20961236	3R_20961236_SNP [dm3] 3R_25135514_SNP [dm6]	A	T	2.797e^-4	0.806	INTRON Bili
X	1906147	X_1906147_SNP [dm3] X_2012114_SNP [dm6]	G	T	2.799e^-4	0.806	UPSTREAM east INTRON east	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	7759399	2L_7759399_SNP [dm3] 2L_7759399_SNP [dm6]	C	T	2.805e^-4	0.807	INTRON CG7196
2R	13848869	2R_13848869_SNP [dm3] 2R_17961364_SNP [dm6]	A	C	2.809e^-4	0.807	INTERGENIC
2R	11381113	2R_11381113_INS [dm3] 2R_15493608_INS [dm6]	C	CAC	2.818e^-4	0.808	INTRON CG12964
3L	15293645	3L_15293645_SNP [dm3] 3L_15300545_SNP [dm6]	C	T	2.828e^-4	0.809	NON_SYNONYMOUS_CODING Best4 DOWNSTREAM Best3
2L	11868782	2L_11868782_SNP [dm3] 2L_11868782_SNP [dm6]	C	G	2.831e^-4	0.809	INTRON Pde1c
X	21500128	X_21500128_SNP [dm3] X_21629101_SNP [dm6]	C	G	2.835e^-4	0.809	UTR_5_PRIME DIP1 INTRON DIP1
3R	12521915	3R_12521915_DEL [dm3] 3R_16696193_DEL [dm6]	GC	G	2.845e^-4	0.809	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	16863706	3L_16863706_SNP [dm3] 3L_16870606_SNP [dm6]	A	T	2.854e^-4	0.809	INTRON Lmpt
2R	4510574	2R_4510574_SNP [dm3] 2R_8623069_SNP [dm6]	T	C	2.857e^-4	0.809	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25616869	3R_25616869_SNP [dm3] 3R_29791147_SNP [dm6]	A	C	2.859e^-4	0.809	INTRON kay	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11481704	2L_11481704_SNP [dm3] 2L_11481704_SNP [dm6]	A	G	2.866e^-4	0.809	INTERGENIC
2L	9019572	2L_9019572_SNP [dm3] 2L_9019572_SNP [dm6]	T	A	2.871e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18659239	2R_18659239_SNP [dm3] 2R_22771734_SNP [dm6]	C	G	2.871e^-4	0.809	INTRON CG42260
2L	15302895	2L_15302895_SNP [dm3] 2L_15302895_SNP [dm6]	T	C	2.877e^-4	0.809	INTERGENIC
2L	8273355	2L_8273355_DEL [dm3] 2L_8273355_DEL [dm6]	TA	T	2.887e^-4	0.809	UTR_5_PRIME Btk29A INTRON Btk29A
3L	2007642	3L_2007642_SNP [dm3] 3L_2007642_SNP [dm6]	G	C	2.888e^-4	0.809	INTERGENIC
3R	12932510	3R_12932510_SNP [dm3] 3R_17106788_SNP [dm6]	A	T	2.888e^-4	0.809	SYNONYMOUS_CODING cher INTRON cher	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13907022	3R_13907022_SNP [dm3] 3R_18081300_SNP [dm6]	C	G	2.897e^-4	0.809	SYNONYMOUS_CODING CG14317	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23142959	3R_23142959_SNP [dm3] 3R_27317237_SNP [dm6]	C	G	2.901e^-4	0.809	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	758281	2L_758281_SNP [dm3] 2L_758281_SNP [dm6]	A	T	2.908e^-4	0.809	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8301161	2R_8301161_SNP [dm3] 2R_12413656_SNP [dm6]	G	A	2.911e^-4	0.809	UPSTREAM Cpr49Ah INTERGENIC
2L	7379269	2L_7379269_SNP [dm3] 2L_7379269_SNP [dm6]	T	C	2.933e^-4	0.809	SYNONYMOUS_CODING ninaC
2L	8275457	2L_8275457_SNP [dm3] 2L_8275457_SNP [dm6]	G	A	2.937e^-4	0.809	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7938640	2R_7938640_SNP [dm3] 2R_12051135_SNP [dm6]	A	G	2.938e^-4	0.809	SYNONYMOUS_CODING CG30039 DOWNSTREAM Drep-1
3L	639515	3L_639515_SNP [dm3] 3L_639515_SNP [dm6]	A	G	2.940e^-4	0.809	UPSTREAM CR43423 & 1 other EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_inv mE1_TFBS_Trl
2L	8275515	2L_8275515_SNP [dm3] 2L_8275515_SNP [dm6]	T	G	2.950e^-4	0.809	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6724190	3R_6724190_DEL [dm3] 3R_10898468_DEL [dm6]	GG	G	2.951e^-4	0.809	EXON CR45578	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8336821	2R_8336821_SNP [dm3] 2R_12449316_SNP [dm6]	C	T	2.960e^-4	0.809	SYNONYMOUS_CODING Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	23143354	3R_23143354_SNP [dm3] 3R_27317632_SNP [dm6]	G	A	2.963e^-4	0.809	SYNONYMOUS_CODING CG3339 UPSTREAM CR44287	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12911397	2L_12911397_SNP [dm3] 2L_12911397_SNP [dm6]	T	G	2.963e^-4	0.809	INTERGENIC
2L	14730019	2L_14730019_SNP [dm3] 2L_14730019_SNP [dm6]	T	C	2.965e^-4	0.809	UTR_5_PRIME CG42685
2L	6003608	2L_6003608_SNP [dm3] 2L_6003608_SNP [dm6]	G	A	2.966e^-4	0.809	UTR_3_PRIME Tsp26A & 1 other UPSTREAM CR43866	TF binding site mE1_TFBS_cad
2R	6015381	2R_6015381_INS [dm3] 2R_10127876_INS [dm6]	C	TT	2.967e^-4	0.809	INTRON gem	TF binding site BDTNP1_TFBS_dl
X	4688836	X_4688836_INS [dm3] X_4794803_INS [dm6]	T	TT	2.969e^-4	0.809	INTERGENIC
X	4688839	X_4688839_INS [dm3] X_4794806_INS [dm6]	G	GTGTCCCG	2.969e^-4	0.809	INTERGENIC
X	16232079	X_16232079_SNP [dm3] X_16338046_SNP [dm6]	T	C	2.976e^-4	0.809	UTR_3_PRIME Dsp1
X	9009438	X_9009438_SNP [dm3] X_9115405_SNP [dm6]	A	G	2.983e^-4	0.809	SYNONYMOUS_CODING AP-1gamma
3R	23200680	3R_23200680_SNP [dm3] 3R_27374958_SNP [dm6]	C	G	2.993e^-4	0.809	DOWNSTREAM side INTERGENIC
2L	15949407	2L_15949407_SNP [dm3] 2L_15949407_SNP [dm6]	G	C	2.997e^-4	0.809	INTRON beat-Ib
2R	13357176	2R_13357176_SNP [dm3] 2R_17469671_SNP [dm6]	C	T	3.002e^-4	0.809	UTR_5_PRIME qkr54B UPSTREAM qkr54B & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	12872324	3R_12872324_SNP [dm3] 3R_17046602_SNP [dm6]	C	G	3.004e^-4	0.809	SYNONYMOUS_CODING Patr-1
2L	9748127	2L_9748127_SNP [dm3] 2L_9748127_SNP [dm6]	T	C	3.004e^-4	0.809	NON_SYNONYMOUS_CODING Cyp4e3
2L	13155149	2L_13155149_SNP [dm3] 2L_13155149_SNP [dm6]	T	C	3.009e^-4	0.809	INTERGENIC
2L	2125439	2L_2125439_SNP [dm3] 2L_2125439_SNP [dm6]	A	G	3.009e^-4	0.809	INTERGENIC
3R	20696851	3R_20696851_SNP [dm3] 3R_24871129_SNP [dm6]	C	G	3.010e^-4	0.809	UPSTREAM CycB3 DOWNSTREAM CG3744 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5228054	X_5228054_SNP [dm3] X_5334021_SNP [dm6]	A	C	3.020e^-4	0.809	UTR_3_PRIME CanB
2L	13863121	2L_13863121_SNP [dm3] 2L_13863121_SNP [dm6]	A	G	3.026e^-4	0.809	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	11499403	2L_11499403_SNP [dm3] 2L_11499403_SNP [dm6]	A	T	3.026e^-4	0.809	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7389325	3L_7389325_SNP [dm3] 3L_7396225_SNP [dm6]	T	G	3.032e^-4	0.809	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21505372	X_21505372_SNP [dm3] X_21634345_SNP [dm6]	G	A	3.042e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3R	6725351	3R_6725351_SNP [dm3] 3R_10899629_SNP [dm6]	G	C	3.042e^-4	0.809	INTERGENIC
3L	17690552	3L_17690552_DEL [dm3] 3L_17697452_DEL [dm6]	ACATGTAACAA...	A	3.044e^-4	0.809	INTRON Ccn
3L	1449657	3L_1449657_INS [dm3] 3L_1449657_INS [dm6]	C	CGACC	3.046e^-4	0.809	INTRON Ptp61F	TF binding site mE1_TFBS_cnc
2R	18007864	2R_18007864_SNP [dm3] 2R_22120359_SNP [dm6]	C	G	3.058e^-4	0.809	INTRON Vrp1
3L	10571829	3L_10571829_DEL [dm3] 3L_10578729_DEL [dm6]	GG	A	3.060e^-4	0.809	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12695030	3R_12695030_SNP [dm3] 3R_16869308_SNP [dm6]	G	C	3.064e^-4	0.809	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3735376	2L_3735376_SNP [dm3] 2L_3735376_SNP [dm6]	A	G	3.064e^-4	0.809	INTRON CG10019
3R	6686928	3R_6686928_SNP [dm3] 3R_10861206_SNP [dm6]	G	A	3.071e^-4	0.809	SYNONYMOUS_CODING CG6574	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14409968	2L_14409968_SNP [dm3] 2L_14409968_SNP [dm6]	G	T	3.082e^-4	0.809	UPSTREAM elB EXON CR44733	TF binding site mE1_TFBS_D mE1_TFBS_Trl
2L	9486665	2L_9486665_SNP [dm3] 2L_9486665_SNP [dm6]	T	A	3.089e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5909456	3L_5909456_SNP [dm3] 3L_5916356_SNP [dm6]	C	G	3.089e^-4	0.809	INTRON CG13288
2R	16370011	2R_16370011_SNP [dm3] 2R_20482506_SNP [dm6]	T	C	3.093e^-4	0.809	INTERGENIC
2L	16130997	2L_16130997_SNP [dm3] 2L_16130997_SNP [dm6]	A	T	3.096e^-4	0.809	INTERGENIC
2L	16130998	2L_16130998_SNP [dm3] 2L_16130998_SNP [dm6]	G	T	3.096e^-4	0.809	INTERGENIC
2L	16131011	2L_16131011_SNP [dm3] 2L_16131011_SNP [dm6]	A	C	3.096e^-4	0.809	INTERGENIC
2L	7378129	2L_7378129_SNP [dm3] 2L_7378129_SNP [dm6]	G	A	3.104e^-4	0.809	DOWNSTREAM Wnt10 INTRON ninaC
X	4688270	X_4688270_SNP [dm3] X_4794237_SNP [dm6]	A	G	3.108e^-4	0.809	INTERGENIC
2R	4534577	2R_4534577_INS [dm3] 2R_8647072_INS [dm6]	T	TAATG	3.108e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3790807	X_3790807_SNP [dm3] X_3896774_SNP [dm6]	A	G	3.109e^-4	0.809	INTRON CG42541
3L	7387380	3L_7387380_INS [dm3] 3L_7394280_INS [dm6]	G	GGG	3.110e^-4	0.809	INTRON CG8563	TF binding site mE1_TFBS_cad
2R	7752970	2R_7752970_SNP [dm3] 2R_11865465_SNP [dm6]	C	A	3.128e^-4	0.809	DOWNSTREAM CG42531 INTRON Damm
2L	5220573	2L_5220573_SNP [dm3] 2L_5220573_SNP [dm6]	T	C	3.148e^-4	0.809	SYNONYMOUS_CODING tkv	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25416663	3R_25416663_SNP [dm3] 3R_29590941_SNP [dm6]	C	T	3.157e^-4	0.809	UPSTREAM alph & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	19931818	3L_19931818_SNP [dm3] 3L_19938718_SNP [dm6]	C	A	3.158e^-4	0.809	UPSTREAM Ac76E INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21337066	3R_21337066_SNP [dm3] 3R_25511344_SNP [dm6]	G	T	3.158e^-4	0.809	INTERGENIC
2L	1296871	2L_1296871_DEL [dm3] 2L_1296871_DEL [dm6]	GAC	G	3.163e^-4	0.809	DOWNSTREAM robo3 INTERGENIC
3R	12859360	3R_12859360_SNP [dm3] 3R_17033638_SNP [dm6]	C	T	3.164e^-4	0.809	UTR_3_PRIME CG4009 DOWNSTREAM CG4009 & 1 other
2L	8772926	2L_8772926_SNP [dm3] 2L_8772926_SNP [dm6]	T	A	3.164e^-4	0.809	UPSTREAM CG9465 DOWNSTREAM CG9466 INTERGENIC
3L	5433449	3L_5433449_SNP [dm3] 3L_5440349_SNP [dm6]	C	A	3.169e^-4	0.809	UTR_3_PRIME CG34391 DOWNSTREAM CG34391
2R	16915768	2R_16915768_SNP [dm3] 2R_21028263_SNP [dm6]	C	T	3.177e^-4	0.809	INTERGENIC
3R	14350142	3R_14350142_SNP [dm3] 3R_18524420_SNP [dm6]	C	T	3.182e^-4	0.809	INTRON fru
2R	21068289	2R_21068289_SNP [dm3] 2R_25180766_SNP [dm6]	A	G	3.195e^-4	0.809	INTERGENIC
3L	9153276	3L_9153276_SNP [dm3] 3L_9160176_SNP [dm6]	A	G	3.197e^-4	0.809	INTRON Rdl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19792664	2R_19792664_SNP [dm3] 2R_23905141_SNP [dm6]	G	A	3.200e^-4	0.809	UTR_3_PRIME CG13562 DOWNSTREAM Nap1
2R	19792667	2R_19792667_SNP [dm3] 2R_23905144_SNP [dm6]	T	C	3.200e^-4	0.809	UTR_3_PRIME CG13562 DOWNSTREAM Nap1
3R	9591724	3R_9591724_SNP [dm3] 3R_13766002_SNP [dm6]	T	A	3.205e^-4	0.809	NON_SYNONYMOUS_CODING CG9312
3R	25597625	3R_25597625_SNP [dm3] 3R_29771903_SNP [dm6]	A	T	3.205e^-4	0.809	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10410458	3R_10410458_SNP [dm3] 3R_14584736_SNP [dm6]	T	G	3.206e^-4	0.809	INTRON stumps
2L	19057159	2L_19057159_SNP [dm3] 2L_19057159_SNP [dm6]	G	A	3.212e^-4	0.809	NON_SYNONYMOUS_CODING CG10492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18795171	3R_18795171_SNP [dm3] 3R_22969449_SNP [dm6]	G	A	3.213e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13872197	3R_13872197_SNP [dm3] 3R_18046475_SNP [dm6]	T	C	3.218e^-4	0.809	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
3R	17516638	3R_17516638_SNP [dm3] 3R_21690916_SNP [dm6]	A	T	3.220e^-4	0.809	INTRON CG31176	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14336927	3R_14336927_SNP [dm3] 3R_18511205_SNP [dm6]	G	A	3.228e^-4	0.809	INTRON fru
3R	19366798	3R_19366798_SNP [dm3] 3R_23541076_SNP [dm6]	A	G	3.233e^-4	0.809	INTERGENIC
2R	11972556	2R_11972556_SNP [dm3] 2R_16085051_SNP [dm6]	G	A	3.237e^-4	0.809	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad
3L	17177621	3L_17177621_SNP [dm3] 3L_17184521_SNP [dm6]	A	C	3.244e^-4	0.809	INTRON Rbp6
2L	4747975	2L_4747975_SNP [dm3] 2L_4747975_SNP [dm6]	G	A	3.248e^-4	0.809	INTRON CG15630
3R	23197218	3R_23197218_SNP [dm3] 3R_27371496_SNP [dm6]	A	C	3.251e^-4	0.809	UTR_3_PRIME CG42534 DOWNSTREAM CG42534
3L	7387484	3L_7387484_SNP [dm3] 3L_7394384_SNP [dm6]	A	T	3.255e^-4	0.809	INTRON CG8563	TF binding site mE1_TFBS_cad
2L	5619097	2L_5619097_SNP [dm3] 2L_5619097_SNP [dm6]	T	G	3.261e^-4	0.809	DOWNSTREAM CR44796 INTERGENIC
2L	16930160	2L_16930160_SNP [dm3] 2L_16930160_SNP [dm6]	G	T	3.263e^-4	0.809	INTERGENIC
X	14781188	X_14781188_SNP [dm3] X_14887155_SNP [dm6]	G	A	3.265e^-4	0.809	SYNONYMOUS_CODING CG9514 INTRON Flo2	TF binding site mE1_TFBS_HSA
2L	3688189	2L_3688189_SNP [dm3] 2L_3688189_SNP [dm6]	G	C	3.277e^-4	0.809	INTRON CG34340	TF binding site mE1_TFBS_Kr
2R	20256408	2R_20256408_SNP [dm3] 2R_24368885_SNP [dm6]	C	T	3.281e^-4	0.809	INTRON bs & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_inv
2L	9014307	2L_9014307_SNP [dm3] 2L_9014307_SNP [dm6]	C	T	3.284e^-4	0.809	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC
2R	14883286	2R_14883286_DEL [dm3] 2R_18995781_DEL [dm6]	ATAGGCTTGA	A	3.290e^-4	0.809	DOWNSTREAM snoRNA:abba-a INTRON tn
3R	9781267	3R_9781267_DEL [dm3] 3R_13955545_DEL [dm6]	GACAG	C	3.291e^-4	0.809	INTERGENIC
3L	15693520	3L_15693520_SNP [dm3] 3L_15700420_SNP [dm6]	A	G	3.291e^-4	0.809	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	13934948	3R_13934948_SNP [dm3] 3R_18109226_SNP [dm6]	G	T	3.293e^-4	0.809	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
2L	12973402	2L_12973402_SNP [dm3] 2L_12973402_SNP [dm6]	C	A	3.294e^-4	0.809	UPSTREAM Vha68-2 INTERGENIC
2L	9695561	2L_9695561_SNP [dm3] 2L_9695561_SNP [dm6]	C	T	3.296e^-4	0.809	INTRON Pka-C1
2L	9019470	2L_9019470_SNP [dm3] 2L_9019470_SNP [dm6]	C	T	3.298e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9019537	2L_9019537_SNP [dm3] 2L_9019537_SNP [dm6]	G	C	3.298e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9061022	3R_9061022_SNP [dm3] 3R_13235300_SNP [dm6]	T	G	3.302e^-4	0.809	INTRON Ace
2L	9341379	2L_9341379_SNP [dm3] 2L_9341379_SNP [dm6]	A	T	3.305e^-4	0.809	UTR_3_PRIME Eaat1
2R	21070557	2R_21070557_SNP [dm3] 2R_25183034_SNP [dm6]	C	T	3.307e^-4	0.809	DOWNSTREAM CG9380 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18594033	3R_18594033_SNP [dm3] 3R_22768311_SNP [dm6]	T	C	3.324e^-4	0.811	SYNONYMOUS_CODING CG43091 UPSTREAM CG13841 DOWNSTREAM CG43092 INTRON Usp12-46 & 1 other
3R	18101284	3R_18101284_SNP [dm3] 3R_22275562_SNP [dm6]	T	G	3.325e^-4	0.811	INTRON SKIP	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15176117	2R_15176117_SNP [dm3] 2R_19288612_SNP [dm6]	G	A	3.334e^-4	0.812	SYNONYMOUS_CODING CG18606 UPSTREAM CG18607	TF binding site mE1_TFBS_HSA
2L	15900587	2L_15900587_SNP [dm3] 2L_15900587_SNP [dm6]	A	G	3.338e^-4	0.812	UPSTREAM CG31823 DOWNSTREAM CG31821 INTERGENIC
2L	11483985	2L_11483985_SNP [dm3] 2L_11483985_SNP [dm6]	G	T	3.346e^-4	0.813	UPSTREAM CG43355 & 1 other INTERGENIC
3L	3577132	3L_3577132_SNP [dm3] 3L_3577132_SNP [dm6]	A	T	3.357e^-4	0.814	INTRON Eip63E
2L	7369459	2L_7369459_SNP [dm3] 2L_7369459_SNP [dm6]	A	G	3.360e^-4	0.814	DOWNSTREAM CR44063 INTRON Wnt10
X	16065621	X_16065621_SNP [dm3] X_16171588_SNP [dm6]	T	A	3.368e^-4	0.815	INTERGENIC
X	15431677	X_15431677_SNP [dm3] X_15537644_SNP [dm6]	A	T	3.370e^-4	0.815	INTRON Ac13E
2R	4206392	2R_4206392_SNP [dm3] 2R_8318887_SNP [dm6]	T	C	3.377e^-4	0.815	INTERGENIC
3L	10898166	3L_10898166_SNP [dm3] 3L_10905066_SNP [dm6]	C	A	3.385e^-4	0.815	INTERGENIC
2L	4712444	2L_4712444_SNP [dm3] 2L_4712444_SNP [dm6]	T	C	3.385e^-4	0.815	SYNONYMOUS_CODING CG34351
3R	14063530	3R_14063530_SNP [dm3] 3R_18237808_SNP [dm6]	C	A	3.399e^-4	0.816	INTRON repo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6012825	3R_6012825_DEL [dm3] 3R_10187103_DEL [dm6]	TT	A	3.399e^-4	0.816	INTRON CG12814
2L	8365873	2L_8365873_SNP [dm3] 2L_8365873_SNP [dm6]	C	A	3.413e^-4	0.818	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	6588321	2L_6588321_SNP [dm3] 2L_6588321_SNP [dm6]	C	T	3.415e^-4	0.818	INTRON CG11319
3L	9395701	3L_9395701_SNP [dm3] 3L_9402601_SNP [dm6]	G	A	3.435e^-4	0.821	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	12116000	2L_12116000_SNP [dm3] 2L_12116000_SNP [dm6]	G	A	3.437e^-4	0.821	INTRON CG17211
2L	7170699	2L_7170699_SNP [dm3] 2L_7170699_SNP [dm6]	G	C	3.447e^-4	0.821	INTERGENIC
3R	14336947	3R_14336947_SNP [dm3] 3R_18511225_SNP [dm6]	A	G	3.448e^-4	0.821	INTRON fru
3L	9025033	3L_9025033_SNP [dm3] 3L_9031933_SNP [dm6]	T	C	3.449e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10938601	2R_10938601_SNP [dm3] 2R_15051096_SNP [dm6]	T	C	3.463e^-4	0.822	UPSTREAM CR43622 INTERGENIC
2R	7121759	2R_7121759_SNP [dm3] 2R_11234254_SNP [dm6]	T	A	3.464e^-4	0.822	SYNONYMOUS_CODING CG13228 UPSTREAM CG13218 & 1 other
2L	8275037	2L_8275037_SNP [dm3] 2L_8275037_SNP [dm6]	T	C	3.473e^-4	0.822	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3321244	2L_3321244_SNP [dm3] 2L_3321244_SNP [dm6]	T	G	3.476e^-4	0.822	INTRON CG8837
3R	19358058	3R_19358058_SNP [dm3] 3R_23532336_SNP [dm6]	G	T	3.484e^-4	0.822	DOWNSTREAM CG10170 INTERGENIC
2L	1853161	2L_1853161_SNP [dm3] 2L_1853161_SNP [dm6]	G	A	3.487e^-4	0.822	INTRON wry
3R	20980890	3R_20980890_SNP [dm3] 3R_25155168_SNP [dm6]	T	G	3.489e^-4	0.822	INTERGENIC
2L	14396746	2L_14396746_SNP [dm3] 2L_14396746_SNP [dm6]	T	C	3.490e^-4	0.822	INTRON elB
X	5146876	X_5146876_SNP [dm3] X_5252843_SNP [dm6]	C	T	3.494e^-4	0.822	UTR_3_PRIME CG15465 & 1 other	TF binding site mE1_TFBS_kn
2R	4510590	2R_4510590_SNP [dm3] 2R_8623085_SNP [dm6]	T	C	3.498e^-4	0.822	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14937268	2L_14937268_SNP [dm3] 2L_14937268_SNP [dm6]	A	T	3.505e^-4	0.822	INTRON CG42313
3R	13934838	3R_13934838_SNP [dm3] 3R_18109116_SNP [dm6]	G	T	3.508e^-4	0.822	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
3R	16233868	3R_16233868_SNP [dm3] 3R_20408146_SNP [dm6]	T	C	3.510e^-4	0.822	UPSTREAM CG10881 & 1 other INTRON Gfrl
3R	23059769	3R_23059769_SNP [dm3] 3R_27234047_SNP [dm6]	A	G	3.515e^-4	0.822	SYNONYMOUS_CODING CG31068 INTRON CG31064	TF binding site mE1_TFBS_HSA
2L	4702652	2L_4702652_SNP [dm3] 2L_4702652_SNP [dm6]	G	A	3.518e^-4	0.822	INTRON CG34351
3R	13920309	3R_13920309_SNP [dm3] 3R_18094587_SNP [dm6]	T	C	3.525e^-4	0.822	INTRON sr
3R	13816548	3R_13816548_SNP [dm3] 3R_17990826_SNP [dm6]	C	A	3.529e^-4	0.822	INTRON cpo
X	15674847	X_15674847_SNP [dm3] X_15780814_SNP [dm6]	C	G	3.540e^-4	0.823	SYNONYMOUS_CODING Efhc1.1 DOWNSTREAM CG43673	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	23760763	3R_23760763_SNP [dm3] 3R_27935041_SNP [dm6]	C	T	3.541e^-4	0.823	NON_SYNONYMOUS_CODING Mes-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	15442835	3R_15442835_SNP [dm3] 3R_19617113_SNP [dm6]	C	T	3.563e^-4	0.823	INTRON CG6231
3R	10626863	3R_10626863_SNP [dm3] 3R_14801141_SNP [dm6]	A	G	3.563e^-4	0.823	UTR_3_PRIME CG14856 UPSTREAM CG14857
2L	15645780	2L_15645780_SNP [dm3] 2L_15645780_SNP [dm6]	T	C	3.567e^-4	0.823	UTR_3_PRIME CG4587 DOWNSTREAM CG4587
X	18570672	X_18570672_SNP [dm3] X_18676639_SNP [dm6]	G	A	3.570e^-4	0.823	EXON CR45710
3L	3362307	3L_3362307_SNP [dm3] 3L_3362307_SNP [dm6]	G	C	3.573e^-4	0.823	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	4473269	2R_4473269_SNP [dm3] 2R_8585764_SNP [dm6]	T	C	3.575e^-4	0.823	UPSTREAM CG42326 INTERGENIC
2R	8342025	2R_8342025_SNP [dm3] 2R_12454520_SNP [dm6]	G	T	3.578e^-4	0.823	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12834043	3L_12834043_SNP [dm3] 3L_12840943_SNP [dm6]	A	G	3.579e^-4	0.823	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	10112524	X_10112524_SNP [dm3] X_10218491_SNP [dm6]	G	C	3.580e^-4	0.823	DOWNSTREAM CR45629 INTRON CG15308 & 1 other
2L	12115197	2L_12115197_SNP [dm3] 2L_12115197_SNP [dm6]	T	C	3.586e^-4	0.823	INTRON CG17211
2R	4534579	2R_4534579_INS [dm3] 2R_8647074_INS [dm6]	T	TGAGAAGA	3.595e^-4	0.823	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15013456	2L_15013456_SNP [dm3] 2L_15013456_SNP [dm6]	A	G	3.604e^-4	0.823	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11392260	2L_11392260_SNP [dm3] 2L_11392260_SNP [dm6]	C	A	3.605e^-4	0.823	EXON CR43681	regulatory region REDfly_CRMs
3L	5632807	3L_5632807_SNP [dm3] 3L_5639707_SNP [dm6]	T	A	3.605e^-4	0.823	INTRON Blimp-1
2R	8854254	2R_8854254_SNP [dm3] 2R_12966749_SNP [dm6]	C	T	3.609e^-4	0.823	SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26160501	3R_26160501_SNP [dm3] 3R_30334779_SNP [dm6]	G	T	3.620e^-4	0.825	INTRON hdc
2L	13155772	2L_13155772_SNP [dm3] 2L_13155772_SNP [dm6]	A	C	3.628e^-4	0.825	INTERGENIC
2R	17355424	2R_17355424_SNP [dm3] 2R_21467919_SNP [dm6]	A	C	3.629e^-4	0.825	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15883577	2L_15883577_SNP [dm3] 2L_15883577_SNP [dm6]	A	T	3.637e^-4	0.826	UPSTREAM CG44475 INTERGENIC
3L	7389348	3L_7389348_SNP [dm3] 3L_7396248_SNP [dm6]	C	G	3.641e^-4	0.826	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17293581	2R_17293581_DEL [dm3] 2R_21406076_DEL [dm6]	TTGACAAGCGTTTCAAT...	T	3.653e^-4	0.827	INTRON Sdc
2L	12973406	2L_12973406_SNP [dm3] 2L_12973406_SNP [dm6]	A	G	3.656e^-4	0.827	UPSTREAM Vha68-2 INTERGENIC
X	4062359	X_4062359_SNP [dm3] X_4168326_SNP [dm6]	A	G	3.667e^-4	0.828	INTRON Fas2	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	17474774	2R_17474774_SNP [dm3] 2R_21587269_SNP [dm6]	C	A	3.674e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7214401	2L_7214401_SNP [dm3] 2L_7214401_SNP [dm6]	C	A	3.682e^-4	0.828	INTRON CG13784
X	19649027	X_19649027_SNP [dm3] X_19754994_SNP [dm6]	G	C	3.685e^-4	0.828	UTR_5_PRIME Pmp70 INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	14725001	3R_14725001_SNP [dm3] 3R_18899279_SNP [dm6]	T	A	3.692e^-4	0.828	UTR_3_PRIME CG14297 UPSTREAM Rh2	regulatory region REDfly_CRMs
2R	9412411	2R_9412411_SNP [dm3] 2R_13524906_SNP [dm6]	C	T	3.692e^-4	0.828	UPSTREAM CG13332 INTRON Vmat	TF binding site mE1_TFBS_cad
3L	16019046	3L_16019046_INS [dm3] 3L_16025946_INS [dm6]	A	AAAACATATATACTTCAGTT...	3.697e^-4	0.828	INTRON Notum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	15782500	2L_15782500_SNP [dm3] 2L_15782500_SNP [dm6]	A	C	3.708e^-4	0.828	INTERGENIC
3R	13217605	3R_13217605_SNP [dm3] 3R_17391883_SNP [dm6]	C	A	3.709e^-4	0.828	SPLICE_SITE_REGION CR44160 UTR_5_PRIME sds22 UPSTREAM Brf EXON CR44160	TF binding site mE1_TFBS_HSA
3L	7389330	3L_7389330_SNP [dm3] 3L_7396230_SNP [dm6]	T	A	3.710e^-4	0.828	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9491152	2L_9491152_SNP [dm3] 2L_9491152_SNP [dm6]	T	A	3.711e^-4	0.828	DOWNSTREAM Gdi INTERGENIC
3L	7389328	3L_7389328_SNP [dm3] 3L_7396228_SNP [dm6]	T	C	3.712e^-4	0.828	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8363132	2L_8363132_SNP [dm3] 2L_8363132_SNP [dm6]	G	T	3.722e^-4	0.828	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9018970	2L_9018970_SNP [dm3] 2L_9018970_SNP [dm6]	C	A	3.728e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9127487	2R_9127487_SNP [dm3] 2R_13239982_SNP [dm6]	T	C	3.730e^-4	0.828	UPSTREAM CG4679 INTRON GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3951588	3L_3951588_SNP [dm3] 3L_3951588_SNP [dm6]	C	G	3.733e^-4	0.828	INTRON CG14984
3R	22764697	3R_22764697_SNP [dm3] 3R_26938975_SNP [dm6]	T	C	3.736e^-4	0.828	SYNONYMOUS_CODING sda
X	2288764	X_2288764_SNP [dm3] X_2394731_SNP [dm6]	C	T	3.740e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8770519	3L_8770519_INS [dm3] 3L_8777419_INS [dm6]	T	AAGCTTCAAAAC...	3.743e^-4	0.828	INTRON Fhos
X	4676067	X_4676067_SNP [dm3] X_4782034_SNP [dm6]	C	T	3.755e^-4	0.828	DOWNSTREAM CG15471 INTERGENIC
2L	14041700	2L_14041700_SNP [dm3] 2L_14041700_SNP [dm6]	A	G	3.757e^-4	0.828	UTR_5_PRIME nAChRalpha5	TF binding site BDTNP1_TFBS_dl
3R	12872261	3R_12872261_SNP [dm3] 3R_17046539_SNP [dm6]	T	C	3.761e^-4	0.828	INTRON Patr-1
2L	3193130	2L_3193130_SNP [dm3] 2L_3193130_SNP [dm6]	G	A	3.763e^-4	0.828	INTRON CG34393
3L	501614	3L_501614_SNP [dm3] 3L_501614_SNP [dm6]	G	A	3.780e^-4	0.831	DOWNSTREAM CG34268 INTRON klar
2L	13542173	2L_13542173_SNP [dm3] 2L_13542173_SNP [dm6]	T	C	3.787e^-4	0.831	UPSTREAM CG16853 DOWNSTREAM CG16852 INTRON B4 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	8275999	2L_8275999_SNP [dm3] 2L_8275999_SNP [dm6]	C	G	3.790e^-4	0.831	INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9497592	3R_9497592_SNP [dm3] 3R_13671870_SNP [dm6]	G	A	3.791e^-4	0.831	INTRON Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14652618	2L_14652618_SNP [dm3] 2L_14652618_SNP [dm6]	A	G	3.797e^-4	0.831	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16233809	3R_16233809_SNP [dm3] 3R_20408087_SNP [dm6]	A	T	3.804e^-4	0.831	UPSTREAM CG10881 & 1 other INTRON Gfrl
2L	17603268	2L_17603268_SNP [dm3] 2L_17603268_SNP [dm6]	G	A	3.809e^-4	0.831	NON_SYNONYMOUS_CODING Sytalpha	TF binding site mE1_TFBS_bab1
3L	516680	3L_516680_SNP [dm3] 3L_516680_SNP [dm6]	A	G	3.812e^-4	0.831	INTRON klar
3R	22672439	3R_22672439_SNP [dm3] 3R_26846717_SNP [dm6]	A	T	3.829e^-4	0.832	INTRON Lerp
3R	13172196	3R_13172196_SNP [dm3] 3R_17346474_SNP [dm6]	C	A	3.834e^-4	0.832	UPSTREAM beat-IIa INTRON beat-IIa
3R	13890351	3R_13890351_SNP [dm3] 3R_18064629_SNP [dm6]	A	G	3.838e^-4	0.832	INTERGENIC
3R	12851027	3R_12851027_SNP [dm3] 3R_17025305_SNP [dm6]	C	T	3.839e^-4	0.832	INTRON Pxd
2R	15141410	2R_15141410_SNP [dm3] 2R_19253905_SNP [dm6]	T	A	3.842e^-4	0.832	UPSTREAM CG33453 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	2338979	2L_2338979_SNP [dm3] 2L_2338979_SNP [dm6]	G	A	3.844e^-4	0.832	SYNONYMOUS_CODING eys INTRON CG9967
2L	13155019	2L_13155019_SNP [dm3] 2L_13155019_SNP [dm6]	G	A	3.847e^-4	0.832	INTERGENIC
X	6895315	X_6895315_SNP [dm3] X_7001282_SNP [dm6]	G	C	3.848e^-4	0.832	UTR_3_PRIME Inx2 DOWNSTREAM Inx2 INTRON Inx7 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8997218	3R_8997218_SNP [dm3] 3R_13171496_SNP [dm6]	C	G	3.855e^-4	0.832	INTERGENIC
X	4688520	X_4688520_SNP [dm3] X_4794487_SNP [dm6]	C	T	3.864e^-4	0.832	INTERGENIC
2L	14433781	2L_14433781_DEL [dm3] 2L_14433781_DEL [dm6]	ACACTTTGAGAATA...	A	3.869e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	18844781	2R_18844781_SNP [dm3] 2R_22957258_SNP [dm6]	G	C	3.870e^-4	0.832	EXON CR44780
2R	12498089	2R_12498089_SNP [dm3] 2R_16610584_SNP [dm6]	A	G	3.874e^-4	0.832	INTRON CG5065
2L	11789517	2L_11789517_SNP [dm3] 2L_11789517_SNP [dm6]	T	G	3.886e^-4	0.833	UPSTREAM CG14932 DOWNSTREAM CG14931 INTERGENIC
X	4107032	X_4107032_SNP [dm3] X_4212999_SNP [dm6]	G	A	3.890e^-4	0.833	UPSTREAM CG43288 INTERGENIC
3R	12852880	3R_12852880_SNP [dm3] 3R_17027158_SNP [dm6]	A	G	3.891e^-4	0.833	INTRON Pxd
2R	18759523	2R_18759523_SNP [dm3] 2R_22872000_SNP [dm6]	A	G	3.909e^-4	0.836	SYNONYMOUS_CODING CG13532	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15194896	2R_15194896_SNP [dm3] 2R_19307391_SNP [dm6]	A	T	3.912e^-4	0.836	UTR_3_PRIME CG7461 DOWNSTREAM EndoB & 1 other
X	10446938	X_10446938_SNP [dm3] X_10552905_SNP [dm6]	G	A	3.916e^-4	0.836	INTRON spri
3R	23207572	3R_23207572_SNP [dm3] 3R_27381850_SNP [dm6]	A	C	3.926e^-4	0.837	UTR_3_PRIME side INTRON side
X	4091448	X_4091448_SNP [dm3] X_4197415_SNP [dm6]	A	G	3.933e^-4	0.837	INTRON Fas2
X	21526586	X_21526586_SNP [dm3] X_21655559_SNP [dm6]	G	C	3.938e^-4	0.837	INTERGENIC	transposable element FlyBase
3L	2805775	3L_2805775_DEL [dm3] 3L_2805775_DEL [dm6]	TGCATTTTTT	T	3.945e^-4	0.838	INTRON CG43444
X	8406594	X_8406594_SNP [dm3] X_8512561_SNP [dm6]	G	T	3.958e^-4	0.84	SYNONYMOUS_CODING CG33181
2L	8275052	2L_8275052_SNP [dm3] 2L_8275052_SNP [dm6]	A	T	3.967e^-4	0.84	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2321497	3R_2321497_SNP [dm3] 3R_6495775_SNP [dm6]	C	A	3.969e^-4	0.84	DOWNSTREAM CG15186 & 1 other INTERGENIC
2R	8341992	2R_8341992_SNP [dm3] 2R_12454487_SNP [dm6]	G	A	3.982e^-4	0.841	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5619399	2L_5619399_SNP [dm3] 2L_5619399_SNP [dm6]	T	C	3.984e^-4	0.841	DOWNSTREAM CR44796 INTERGENIC
3R	12851060	3R_12851060_SNP [dm3] 3R_17025338_SNP [dm6]	A	G	3.985e^-4	0.841	INTRON Pxd
3L	1745242	3L_1745242_SNP [dm3] 3L_1745242_SNP [dm6]	C	T	4.003e^-4	0.844	UTR_3_PRIME Gk	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	1308076	X_1308076_SNP [dm3] X_1414043_SNP [dm6]	C	A	4.018e^-4	0.845	UTR_5_PRIME futsch	TF binding site mE1_TFBS_chinmo
3R	25597607	3R_25597607_SNP [dm3] 3R_29771885_SNP [dm6]	G	T	4.027e^-4	0.845	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15257531	3L_15257531_SNP [dm3] 3L_15264431_SNP [dm6]	T	C	4.030e^-4	0.845	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11081503	2R_11081503_SNP [dm3] 2R_15193998_SNP [dm6]	G	A	4.033e^-4	0.845	UTR_3_PRIME CG43829 UPSTREAM Sfp51E
2L	7369473	2L_7369473_SNP [dm3] 2L_7369473_SNP [dm6]	T	A	4.034e^-4	0.845	DOWNSTREAM CR44063 INTRON Wnt10
2R	14206091	2R_14206091_SNP [dm3] 2R_18318586_SNP [dm6]	C	T	4.042e^-4	0.845	INTRON sbb
3L	9025095	3L_9025095_MNP [dm3] 3L_9031995_MNP [dm6]	ACAC	GAGT	4.046e^-4	0.845	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9757074	3R_9757074_SNP [dm3] 3R_13931352_SNP [dm6]	G	C	4.049e^-4	0.845	INTERGENIC	TF binding site mE1_TFBS_cad
2R	4894450	2R_4894450_SNP [dm3] 2R_9006945_SNP [dm6]	C	T	4.050e^-4	0.845	UPSTREAM Np DOWNSTREAM CG8172 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	7969304	2R_7969304_SNP [dm3] 2R_12081799_SNP [dm6]	C	G	4.052e^-4	0.845	UTR_3_PRIME CG13186	TF binding site mE1_TFBS_inv
3R	23143677	3R_23143677_SNP [dm3] 3R_27317955_SNP [dm6]	T	G	4.063e^-4	0.845	SYNONYMOUS_CODING CG3339 UPSTREAM CR44287	TF binding site mE1_TFBS_chinmo
3R	12851856	3R_12851856_SNP [dm3] 3R_17026134_SNP [dm6]	T	C	4.067e^-4	0.845	INTRON Pxd
X	11425212	X_11425212_SNP [dm3] X_11531179_SNP [dm6]	C	T	4.068e^-4	0.845	INTRON Drak
3R	21336846	3R_21336846_SNP [dm3] 3R_25511124_SNP [dm6]	C	T	4.081e^-4	0.845	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6807934	2L_6807934_SNP [dm3] 2L_6807934_SNP [dm6]	T	G	4.089e^-4	0.845	INTERGENIC
2L	1860552	2L_1860552_SNP [dm3] 2L_1860552_SNP [dm6]	C	T	4.092e^-4	0.845	INTRON CG31663
2L	3229508	2L_3229508_SNP [dm3] 2L_3229508_SNP [dm6]	C	G	4.095e^-4	0.845	INTERGENIC
X	13244547	X_13244547_SNP [dm3] X_13350514_SNP [dm6]	G	T	4.096e^-4	0.845	INTERGENIC
2L	14004131	2L_14004131_SNP [dm3] 2L_14004131_SNP [dm6]	G	A	4.097e^-4	0.845	INTERGENIC
2L	14399451	2L_14399451_SNP [dm3] 2L_14399451_SNP [dm6]	C	T	4.102e^-4	0.846	INTRON elB
3L	13918918	3L_13918918_SNP [dm3] 3L_13925818_SNP [dm6]	A	G	4.111e^-4	0.846	UPSTREAM Rgl DOWNSTREAM CG8833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	12866593	3R_12866593_SNP [dm3] 3R_17040871_SNP [dm6]	C	A	4.116e^-4	0.846	SYNONYMOUS_CODING CG5220 UPSTREAM CG18213	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12872248	3R_12872248_SNP [dm3] 3R_17046526_SNP [dm6]	T	C	4.116e^-4	0.846	INTRON Patr-1
X	21301040	X_21301040_SNP [dm3] X_21430013_SNP [dm6]	G	A	4.135e^-4	0.847	UPSTREAM CG10918 INTRON CG42343
3R	21278434	3R_21278434_INS [dm3] 3R_25452712_INS [dm6]	A	AAACAGACGCA...	4.139e^-4	0.847	INTRON Fur1
2R	9151768	2R_9151768_SNP [dm3] 2R_13264263_SNP [dm6]	T	C	4.139e^-4	0.847	UTR_3_PRIME CG42319 DOWNSTREAM CG42319 INTRON CG42319
3R	12736005	3R_12736005_INS [dm3] 3R_16910283_INS [dm6]	A	ATAAA	4.143e^-4	0.847	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	2657112	2L_2657112_SNP [dm3] 2L_2657112_SNP [dm6]	G	A	4.148e^-4	0.847	DOWNSTREAM Prosbeta4R2 INTERGENIC
3R	20993576	3R_20993576_DEL [dm3] 3R_25167854_DEL [dm6]	ACCACCA	A	4.156e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1860550	2L_1860550_SNP [dm3] 2L_1860550_SNP [dm6]	T	G	4.159e^-4	0.847	INTRON CG31663
2L	10101930	2L_10101930_SNP [dm3] 2L_10101930_SNP [dm6]	C	T	4.160e^-4	0.847	INTRON CG44153 & 1 other
2L	6391387	2L_6391387_SNP [dm3] 2L_6391387_SNP [dm6]	A	T	4.162e^-4	0.847	INTRON CG42368	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13170542	3R_13170542_SNP [dm3] 3R_17344820_SNP [dm6]	A	C	4.169e^-4	0.847	INTRON beat-IIa
2L	17601892	2L_17601892_DEL [dm3] 2L_17601892_DEL [dm6]	TTATTTTT	T	4.176e^-4	0.847	INTRON Sytalpha
3L	16018808	3L_16018808_SNP [dm3] 3L_16025708_SNP [dm6]	G	A	4.176e^-4	0.847	INTRON Notum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	17234564	3R_17234564_SNP [dm3] 3R_21408842_SNP [dm6]	T	G	4.188e^-4	0.848	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1
2L	7759935	2L_7759935_SNP [dm3] 2L_7759935_SNP [dm6]	T	C	4.203e^-4	0.85	INTRON CG7196
2L	8296342	2L_8296342_SNP [dm3] 2L_8296342_SNP [dm6]	T	C	4.228e^-4	0.853	DOWNSTREAM CR43752 INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
2L	20700055	2L_20700055_SNP [dm3] 2L_20700055_SNP [dm6]	G	T	4.229e^-4	0.853	INTRON Hr38
2R	19792668	2R_19792668_INS [dm3] 2R_23905145_INS [dm6]	T	TC	4.229e^-4	0.853	UTR_3_PRIME CG13562 DOWNSTREAM Nap1
3L	3134872	3L_3134872_SNP [dm3] 3L_3134872_SNP [dm6]	G	T	4.232e^-4	0.853	UPSTREAM CG11537 INTRON CG11537
2L	7368689	2L_7368689_SNP [dm3] 2L_7368689_SNP [dm6]	A	G	4.253e^-4	0.853	DOWNSTREAM CR44063 INTRON Wnt10
2R	7886336	2R_7886336_SNP [dm3] 2R_11998831_SNP [dm6]	G	A	4.258e^-4	0.853	INTERGENIC
2R	8603929	2R_8603929_SNP [dm3] 2R_12716424_SNP [dm6]	A	T	4.259e^-4	0.853	INTRON CG42663
2R	15142113	2R_15142113_SNP [dm3] 2R_19254608_SNP [dm6]	T	A	4.261e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	18412012	3R_18412012_SNP [dm3] 3R_22586290_SNP [dm6]	A	G	4.268e^-4	0.853	SYNONYMOUS_CODING btn DOWNSTREAM CG6937	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	3241079	2L_3241079_SNP [dm3] 2L_3241079_SNP [dm6]	G	A	4.285e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_sbb
X	10447115	X_10447115_SNP [dm3] X_10553082_SNP [dm6]	C	T	4.287e^-4	0.853	INTRON spri	TF binding site mE1_TFBS_Kr
2L	13972868	2L_13972868_SNP [dm3] 2L_13972868_SNP [dm6]	C	T	4.287e^-4	0.853	NON_SYNONYMOUS_CODING He DOWNSTREAM NimB5 & 1 other
X	11425310	X_11425310_SNP [dm3] X_11531277_SNP [dm6]	C	T	4.304e^-4	0.853	INTRON Drak
3R	26250916	3R_26250916_SNP [dm3] 3R_30425194_SNP [dm6]	G	A	4.305e^-4	0.853	UPSTREAM CG15536 DOWNSTREAM CG2218 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8365874	2L_8365874_SNP [dm3] 2L_8365874_SNP [dm6]	A	T	4.316e^-4	0.853	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	14003238	2L_14003238_SNP [dm3] 2L_14003238_SNP [dm6]	T	G	4.316e^-4	0.853	INTERGENIC
3L	1502518	3L_1502518_SNP [dm3] 3L_1502518_SNP [dm6]	A	T	4.324e^-4	0.853	UTR_5_PRIME pUf68 UPSTREAM Psa DOWNSTREAM cue	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu
3R	12679365	3R_12679365_SNP [dm3] 3R_16853643_SNP [dm6]	T	A	4.333e^-4	0.853	INTRON iab-8 & 1 other EXON iab-4
2L	539304	2L_539304_SNP [dm3] 2L_539304_SNP [dm6]	T	C	4.337e^-4	0.853	SPLICE_SITE_REGION ush INTRON ush	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	18594442	3R_18594442_SNP [dm3] 3R_22768720_SNP [dm6]	G	T	4.339e^-4	0.853	UTR_5_PRIME CG43091 DOWNSTREAM CG43092 INTRON Usp12-46 & 1 other
X	5765385	X_5765385_SNP [dm3] X_5871352_SNP [dm6]	A	G	4.343e^-4	0.853	SYNONYMOUS_CODING GAA1	TF binding site mE1_TFBS_cad
2L	7759838	2L_7759838_SNP [dm3] 2L_7759838_SNP [dm6]	C	T	4.349e^-4	0.853	INTRON CG7196
X	15023788	X_15023788_SNP [dm3] X_15129755_SNP [dm6]	A	T	4.350e^-4	0.853	INTRON drd
3L	17328529	3L_17328529_SNP [dm3] 3L_17335429_SNP [dm6]	A	G	4.364e^-4	0.853	DOWNSTREAM CR44563 & 1 other INTERGENIC
2R	18911151	2R_18911151_SNP [dm3] 2R_23023628_SNP [dm6]	A	G	4.366e^-4	0.853	INTRON twi & 1 other
2L	2331564	2L_2331564_SNP [dm3] 2L_2331564_SNP [dm6]	G	A	4.371e^-4	0.853	INTRON CG9967 & 1 other
2L	2347925	2L_2347925_SNP [dm3] 2L_2347925_SNP [dm6]	C	T	4.375e^-4	0.853	INTRON CG9967 & 1 other
3R	12694976	3R_12694976_SNP [dm3] 3R_16869254_SNP [dm6]	A	G	4.380e^-4	0.853	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	2264980	2L_2264980_SNP [dm3] 2L_2264980_SNP [dm6]	G	A	4.381e^-4	0.853	NON_SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
2R	7512929	2R_7512929_SNP [dm3] 2R_11625424_SNP [dm6]	G	T	4.381e^-4	0.853	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14741032	3R_14741032_SNP [dm3] 3R_18915310_SNP [dm6]	C	T	4.385e^-4	0.853	UTR_5_PRIME Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	13920394	3R_13920394_SNP [dm3] 3R_18094672_SNP [dm6]	T	C	4.385e^-4	0.853	INTRON sr
2L	11789536	2L_11789536_DEL [dm3] 2L_11789536_DEL [dm6]	TT	T	4.392e^-4	0.853	UPSTREAM CG14932 DOWNSTREAM CG14931 INTERGENIC
2L	17429437	2L_17429437_SNP [dm3] 2L_17429437_SNP [dm6]	C	T	4.395e^-4	0.853	UPSTREAM CR44409 INTRON Dif
X	19685229	X_19685229_SNP [dm3] X_19791196_SNP [dm6]	A	T	4.396e^-4	0.853	INTERGENIC
3R	12674373	3R_12674373_SNP [dm3] 3R_16848651_SNP [dm6]	G	T	4.405e^-4	0.853	INTRON iab-8 EXON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14850959	3L_14850959_SNP [dm3] 3L_14857859_SNP [dm6]	T	A	4.407e^-4	0.853	INTRON CG17839
3R	23504665	3R_23504665_DEL [dm3] 3R_27678943_DEL [dm6]	TTTTCTATTGTTTACAAGCG...	T	4.408e^-4	0.853	UTR_3_PRIME CG5590 UPSTREAM CG12883	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	11464250	3R_11464250_SNP [dm3] 3R_15638528_SNP [dm6]	G	C	4.414e^-4	0.853	DOWNSTREAM CG43336 INTERGENIC
3L	5366846	3L_5366846_SNP [dm3] 3L_5373746_SNP [dm6]	G	C	4.415e^-4	0.853	INTERGENIC
2L	4594469	2L_4594469_SNP [dm3] 2L_4594469_SNP [dm6]	C	T	4.426e^-4	0.853	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21336847	3R_21336847_SNP [dm3] 3R_25511125_SNP [dm6]	G	A	4.429e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15059731	2R_15059731_SNP [dm3] 2R_19172226_SNP [dm6]	C	T	4.436e^-4	0.853	SYNONYMOUS_CODING CG10737
2L	13430464	2L_13430464_SNP [dm3] 2L_13430464_SNP [dm6]	G	A	4.440e^-4	0.853	INTRON CG42784
3R	9048524	3R_9048524_SNP [dm3] 3R_13222802_SNP [dm6]	C	T	4.447e^-4	0.853	DOWNSTREAM Ace INTERGENIC
3R	18374984	3R_18374984_SNP [dm3] 3R_22549262_SNP [dm6]	C	G	4.455e^-4	0.853	DOWNSTREAM CR44062 INTERGENIC
2R	5606918	2R_5606918_SNP [dm3] 2R_9719413_SNP [dm6]	A	G	4.456e^-4	0.853	INTRON sqa
3R	13872854	3R_13872854_SNP [dm3] 3R_18047132_SNP [dm6]	C	T	4.462e^-4	0.853	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
X	4688841	X_4688841_SNP [dm3] X_4794808_SNP [dm6]	C	A	4.466e^-4	0.853	INTERGENIC
2L	16147769	2L_16147769_SNP [dm3] 2L_16147769_SNP [dm6]	A	T	4.477e^-4	0.853	INTERGENIC
2R	5598394	2R_5598394_SNP [dm3] 2R_9710889_SNP [dm6]	T	C	4.478e^-4	0.853	UPSTREAM CR44292 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5425049	2L_5425049_SNP [dm3] 2L_5425049_SNP [dm6]	G	C	4.479e^-4	0.853	INTERGENIC
3R	12852449	3R_12852449_SNP [dm3] 3R_17026727_SNP [dm6]	G	A	4.494e^-4	0.853	SYNONYMOUS_CODING Pxd
3R	12483820	3R_12483820_SNP [dm3] 3R_16658098_SNP [dm6]	A	T	4.500e^-4	0.853	UTR_3_PRIME Ubx
2R	4224092	2R_4224092_SNP [dm3] 2R_8336587_SNP [dm6]	G	T	4.500e^-4	0.853	INTRON pdm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	15257132	3L_15257132_SNP [dm3] 3L_15264032_SNP [dm6]	T	A	4.502e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7512877	2R_7512877_SNP [dm3] 2R_11625372_SNP [dm6]	T	G	4.509e^-4	0.853	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18876917	3L_18876917_SNP [dm3] 3L_18883817_SNP [dm6]	T	C	4.511e^-4	0.853	INTRON CG3961
3L	1404064	3L_1404064_SNP [dm3] 3L_1404064_SNP [dm6]	C	T	4.514e^-4	0.853	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	539315	2L_539315_SNP [dm3] 2L_539315_SNP [dm6]	C	A	4.521e^-4	0.853	SYNONYMOUS_CODING ush	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	13901815	3R_13901815_SNP [dm3] 3R_18076093_SNP [dm6]	T	G	4.532e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	1976784	3R_1976784_SNP [dm3] 3R_6151062_SNP [dm6]	G	A	4.533e^-4	0.853	INTRON CG31559
2L	9491141	2L_9491141_SNP [dm3] 2L_9491141_SNP [dm6]	C	T	4.539e^-4	0.853	DOWNSTREAM Gdi INTERGENIC
3R	13140369	3R_13140369_SNP [dm3] 3R_17314647_SNP [dm6]	C	T	4.539e^-4	0.853	INTERGENIC
3R	2341693	3R_2341693_SNP [dm3] 3R_6515971_SNP [dm6]	G	A	4.543e^-4	0.853	INTERGENIC
2L	8275117	2L_8275117_SNP [dm3] 2L_8275117_SNP [dm6]	T	A	4.546e^-4	0.853	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13755242	2L_13755242_SNP [dm3] 2L_13755242_SNP [dm6]	G	T	4.547e^-4	0.853	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
2L	7449437	2L_7449437_SNP [dm3] 2L_7449437_SNP [dm6]	T	C	4.547e^-4	0.853	UTR_5_PRIME santa-maria INTRON santa-maria
2L	15344466	2L_15344466_SNP [dm3] 2L_15344466_SNP [dm6]	T	C	4.551e^-4	0.853	INTERGENIC
X	4091445	X_4091445_SNP [dm3] X_4197412_SNP [dm6]	G	A	4.566e^-4	0.853	INTRON Fas2
3R	12086771	3R_12086771_SNP [dm3] 3R_16261049_SNP [dm6]	C	T	4.575e^-4	0.853	DOWNSTREAM tara & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8860421	3L_8860421_SNP [dm3] 3L_8867321_SNP [dm6]	G	A	4.582e^-4	0.853	INTRON dally
2R	8165613	2R_8165613_SNP [dm3] 2R_12278108_SNP [dm6]	C	G	4.582e^-4	0.853	UTR_3_PRIME Cam

Missing results

By genomic position
Variant impact
Gene name

Cuticul_3_Me_C25_C26 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results