DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.564e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.007002

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	13.5479	0.0011

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2162 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	14550370	2L_14550370_SNP [dm3] 2L_14550370_SNP [dm6]	T	C	2.275e^-7	0.427	DOWNSTREAM CR44853 INTERGENIC	TF binding site mE1_TFBS_cad
2L	21006971	2L_21006971_SNP [dm3] 2L_21006971_SNP [dm6]	A	G	1.140e^-6	0.765	INTRON CG42238
3R	8103861	3R_8103861_SNP [dm3] 3R_12278139_SNP [dm6]	T	A	1.599e^-6	0.765	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	8102682	3R_8102682_SNP [dm3] 3R_12276960_SNP [dm6]	G	A	2.102e^-6	0.765	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8102707	3R_8102707_SNP [dm3] 3R_12276985_SNP [dm6]	T	C	2.102e^-6	0.765	INTRON svp
X	13182667	X_13182667_SNP [dm3] X_13288634_SNP [dm6]	T	C	2.514e^-6	0.765	DOWNSTREAM CG15743 INTRON CG15744	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	9989057	3L_9989057_SNP [dm3] 3L_9995957_SNP [dm6]	C	T	3.171e^-6	0.765	INTRON dpr6
2L	6145354	2L_6145354_SNP [dm3] 2L_6145354_SNP [dm6]	G	A	3.314e^-6	0.765	DOWNSTREAM CG13991 INTERGENIC
X	13182675	X_13182675_SNP [dm3] X_13288642_SNP [dm6]	T	C	4.494e^-6	0.765	DOWNSTREAM CG15743 INTRON CG15744	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	8883344	2L_8883344_SNP [dm3] 2L_8883344_SNP [dm6]	C	T	4.603e^-6	0.765	INTERGENIC
3L	7149700	3L_7149700_SNP [dm3] 3L_7156600_SNP [dm6]	C	T	5.841e^-6	0.765	UTR_5_PRIME corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18836900	3L_18836900_SNP [dm3] 3L_18843800_SNP [dm6]	G	A	7.026e^-6	0.765	INTRON Indy
2L	14001545	2L_14001545_SNP [dm3] 2L_14001545_SNP [dm6]	G	A	7.484e^-6	0.765	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	14333003	3R_14333003_SNP [dm3] 3R_18507281_SNP [dm6]	G	T	7.540e^-6	0.765	UPSTREAM fru INTRON fru	TF binding site mE1_TFBS_HSA
2L	8883300	2L_8883300_SNP [dm3] 2L_8883300_SNP [dm6]	G	A	7.610e^-6	0.765	INTERGENIC
X	4448450	X_4448450_SNP [dm3] X_4554417_SNP [dm6]	G	C	7.700e^-6	0.765	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4442442	2L_4442442_SNP [dm3] 2L_4442442_SNP [dm6]	G	A	7.749e^-6	0.765	UTR_5_PRIME CG15432 UPSTREAM Sfp24F DOWNSTREAM morgue INTRON CG15432	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	7226594	2L_7226594_DEL [dm3] 2L_7226594_DEL [dm6]	GG	G	7.768e^-6	0.765	UTR_3_PRIME Ndae1 INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3R	8105599	3R_8105599_SNP [dm3] 3R_12279877_SNP [dm6]	A	T	8.024e^-6	0.765	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	14001501	2L_14001501_SNP [dm3] 2L_14001501_SNP [dm6]	T	C	8.489e^-6	0.765	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	14001563	2L_14001563_SNP [dm3] 2L_14001563_SNP [dm6]	G	C	8.560e^-6	0.765	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	10526790	2R_10526790_SNP [dm3] 2R_14639285_SNP [dm6]	G	T	9.387e^-6	0.776	NON_SYNONYMOUS_CODING CG42715 DOWNSTREAM CG43236 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14001547	2L_14001547_SNP [dm3] 2L_14001547_SNP [dm6]	G	A	1.082e^-5	0.776	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	6137389	X_6137389_SNP [dm3] X_6243356_SNP [dm6]	G	A	1.093e^-5	0.776	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9143032	2R_9143032_INS [dm3] 2R_13255527_INS [dm6]	T	TATTT	1.099e^-5	0.776	UPSTREAM CR44343 INTERGENIC
X	6137091	X_6137091_SNP [dm3] X_6243058_SNP [dm6]	G	A	1.118e^-5	0.776	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8102838	3R_8102838_SNP [dm3] 3R_12277116_SNP [dm6]	T	C	1.150e^-5	0.776	INTRON svp
3L	9974615	3L_9974615_SNP [dm3] 3L_9981515_SNP [dm6]	T	C	1.191e^-5	0.776	INTRON dpr6
X	16897236	X_16897236_DEL [dm3] X_17003203_DEL [dm6]	ACTCGA	A	1.252e^-5	0.776	INTRON CG45002
3L	18372301	3L_18372301_SNP [dm3] 3L_18379201_SNP [dm6]	C	A	1.263e^-5	0.776	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	8069478	2L_8069478_SNP [dm3] 2L_8069478_SNP [dm6]	C	T	1.330e^-5	0.776	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14001569	2L_14001569_SNP [dm3] 2L_14001569_SNP [dm6]	C	T	1.363e^-5	0.776	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	14001536	2L_14001536_SNP [dm3] 2L_14001536_SNP [dm6]	G	C	1.385e^-5	0.776	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	8876305	3L_8876305_SNP [dm3] 3L_8883205_SNP [dm6]	A	C	1.491e^-5	0.776	INTRON dally
3L	7568737	3L_7568737_SNP [dm3] 3L_7575637_SNP [dm6]	A	G	1.630e^-5	0.776	INTERGENIC
X	16751460	X_16751460_SNP [dm3] X_16857427_SNP [dm6]	T	C	1.682e^-5	0.776	INTRON CG13003
2L	18568499	2L_18568499_SNP [dm3] 2L_18568499_SNP [dm6]	A	G	1.704e^-5	0.776	INTRON Pde11
2L	16232387	2L_16232387_SNP [dm3] 2L_16232387_SNP [dm6]	T	G	1.748e^-5	0.776	INTRON CG42817	TF binding site BDTNP1_TFBS_slp1
3L	1129068	3L_1129068_DEL [dm3] 3L_1129068_DEL [dm6]	AG	A	1.753e^-5	0.776	INTERGENIC	regulatory region REDfly_CRMs
3L	8876245	3L_8876245_SNP [dm3] 3L_8883145_SNP [dm6]	C	T	1.772e^-5	0.776	INTRON dally
X	6311352	X_6311352_INS [dm3] X_6417319_INS [dm6]	T	TAA	1.774e^-5	0.776	INTERGENIC
3R	13639450	3R_13639450_SNP [dm3] 3R_17813728_SNP [dm6]	A	G	1.926e^-5	0.776	INTRON tinc	TF binding site mE1_TFBS_HSA
2L	14299698	2L_14299698_SNP [dm3] 2L_14299698_SNP [dm6]	C	T	1.977e^-5	0.776	INTRON wb
2R	9108046	2R_9108046_SNP [dm3] 2R_13220541_SNP [dm6]	A	T	2.031e^-5	0.776	UPSTREAM CG4646 DOWNSTREAM Fsn INTRON CG17059	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2L	4699900	2L_4699900_SNP [dm3] 2L_4699900_SNP [dm6]	C	A	2.044e^-5	0.776	DOWNSTREAM Taf12L INTRON CG34351
X	5471376	X_5471376_SNP [dm3] X_5577343_SNP [dm6]	T	C	2.049e^-5	0.776	INTERGENIC
2R	14883286	2R_14883286_DEL [dm3] 2R_18995781_DEL [dm6]	ATAGGCTTGA	A	2.065e^-5	0.776	DOWNSTREAM snoRNA:abba-a INTRON tn
3L	7583305	3L_7583305_SNP [dm3] 3L_7590205_SNP [dm6]	G	A	2.087e^-5	0.776	SYNONYMOUS_CODING CG7716
3L	18091808	3L_18091808_SNP [dm3] 3L_18098708_SNP [dm6]	A	T	2.097e^-5	0.776	INTRON CG13698
3L	9396652	3L_9396652_SNP [dm3] 3L_9403552_SNP [dm6]	A	T	2.250e^-5	0.776	INTERGENIC
3L	18836861	3L_18836861_SNP [dm3] 3L_18843761_SNP [dm6]	G	A	2.319e^-5	0.776	DOWNSTREAM CR32027 INTRON Indy
3R	14832816	3R_14832816_SNP [dm3] 3R_19007094_SNP [dm6]	C	A	2.324e^-5	0.776	INTRON gukh
X	6137319	X_6137319_SNP [dm3] X_6243286_SNP [dm6]	T	G	2.416e^-5	0.776	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13996612	X_13996612_SNP [dm3] X_14102579_SNP [dm6]	T	C	2.462e^-5	0.776	DOWNSTREAM tRNA:S4:12Ee INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14001533	2L_14001533_SNP [dm3] 2L_14001533_SNP [dm6]	T	C	2.570e^-5	0.776	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	9970736	3R_9970736_SNP [dm3] 3R_14145014_SNP [dm6]	G	A	2.650e^-5	0.776	INTERGENIC
3L	9228609	3L_9228609_SNP [dm3] 3L_9235509_SNP [dm6]	C	G	2.677e^-5	0.776	NON_SYNONYMOUS_CODING CG4483
2L	19097106	2L_19097106_SNP [dm3] 2L_19097106_SNP [dm6]	G	T	2.701e^-5	0.776	INTRON Lim3
X	4448456	X_4448456_SNP [dm3] X_4554423_SNP [dm6]	G	A	2.806e^-5	0.776	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1582237	3L_1582237_SNP [dm3] 3L_1582237_SNP [dm6]	A	G	2.811e^-5	0.776	INTRON CG13917
X	14881902	X_14881902_SNP [dm3] X_14987869_SNP [dm6]	A	C	2.875e^-5	0.776	INTRON eag	TF binding site BDTNP1_TFBS_dl
3R	8110711	3R_8110711_DEL [dm3] 3R_12284989_DEL [dm6]	AA	A	2.880e^-5	0.776	INTRON svp
X	6136089	X_6136089_SNP [dm3] X_6242056_SNP [dm6]	G	A	2.917e^-5	0.776	INTRON Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12031173	2L_12031173_SNP [dm3] 2L_12031173_SNP [dm6]	A	G	2.955e^-5	0.776	INTRON dmGlut
2L	14001556	2L_14001556_SNP [dm3] 2L_14001556_SNP [dm6]	A	C	2.968e^-5	0.776	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	18836857	3L_18836857_SNP [dm3] 3L_18843757_SNP [dm6]	A	G	2.991e^-5	0.776	DOWNSTREAM CR32027 INTRON Indy
3R	25622095	3R_25622095_SNP [dm3] 3R_29796373_SNP [dm6]	G	A	2.995e^-5	0.776	SYNONYMOUS_CODING CG7837 DOWNSTREAM sro	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15553812	2L_15553812_INS [dm3] 2L_15553812_INS [dm6]	T	TG	3.003e^-5	0.776	INTRON kek3
X	13996614	X_13996614_INS [dm3] X_14102581_INS [dm6]	T	TGT	3.049e^-5	0.776	DOWNSTREAM tRNA:S4:12Ee INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5103923	2R_5103923_INS [dm3] 2R_9216418_INS [dm6]	A	AGTGCGTTG	3.085e^-5	0.776	INTERGENIC
2L	7696878	2L_7696878_SNP [dm3] 2L_7696878_SNP [dm6]	T	A	3.187e^-5	0.776	INTRON Tep2
2L	17432405	2L_17432405_SNP [dm3] 2L_17432405_SNP [dm6]	G	A	3.314e^-5	0.776	INTRON Dif
2L	9547699	2L_9547699_SNP [dm3] 2L_9547699_SNP [dm6]	C	G	3.370e^-5	0.776	DOWNSTREAM jp & 1 other INTERGENIC
2L	14001513	2L_14001513_SNP [dm3] 2L_14001513_SNP [dm6]	G	A	3.399e^-5	0.776	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	20052058	2R_20052058_SNP [dm3] 2R_24164535_SNP [dm6]	G	A	3.406e^-5	0.776	INTRON CG3328	TF binding site mE1_TFBS_chinmo
3R	14549466	3R_14549466_INS [dm3] 3R_18723744_INS [dm6]	A	AGA	3.423e^-5	0.776	INTRON Cha
2L	13631696	2L_13631696_DEL [dm3] 2L_13631696_DEL [dm6]	TCGTTCATTCGTGTT...	T	3.434e^-5	0.776	DOWNSTREAM CR43410 INTRON kuz
3L	18836662	3L_18836662_SNP [dm3] 3L_18843562_SNP [dm6]	G	A	3.469e^-5	0.776	DOWNSTREAM CR32027 INTRON Indy
3L	18269289	3L_18269289_SNP [dm3] 3L_18276189_SNP [dm6]	T	G	3.568e^-5	0.776	INTERGENIC
3L	2284102	3L_2284102_DEL [dm3] 3L_2284102_DEL [dm6]	GTTGG	G	3.595e^-5	0.776	INTRON MsR2
2L	7392700	2L_7392700_SNP [dm3] 2L_7392700_SNP [dm6]	G	C	3.605e^-5	0.776	INTRON CG5160
3L	18099093	3L_18099093_SNP [dm3] 3L_18105993_SNP [dm6]	A	T	3.610e^-5	0.776	UTR_5_PRIME CG13698 UPSTREAM mRpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9108073	2R_9108073_SNP [dm3] 2R_13220568_SNP [dm6]	T	A	3.612e^-5	0.776	UPSTREAM CG4646 DOWNSTREAM Fsn INTRON CG17059	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
X	4448398	X_4448398_INS [dm3] X_4554365_INS [dm6]	T	TT	3.617e^-5	0.776	UTR_5_PRIME CG11444 UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14883273	2R_14883273_SNP [dm3] 2R_18995768_SNP [dm6]	G	A	3.654e^-5	0.776	DOWNSTREAM snoRNA:abba-a INTRON tn
X	12421798	X_12421798_SNP [dm3] X_12527765_SNP [dm6]	C	T	3.659e^-5	0.776	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
X	13253153	X_13253153_INS [dm3] X_13359120_INS [dm6]	T	TT	3.682e^-5	0.776	UPSTREAM Syt12 INTERGENIC
3R	19700476	3R_19700476_SNP [dm3] 3R_23874754_SNP [dm6]	A	G	3.747e^-5	0.776	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8116880	3R_8116880_SNP [dm3] 3R_12291158_SNP [dm6]	G	C	3.907e^-5	0.776	INTRON svp	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	7489554	3L_7489554_DEL [dm3] 3L_7496454_DEL [dm6]	GG	G	3.961e^-5	0.776	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
2L	14001538	2L_14001538_SNP [dm3] 2L_14001538_SNP [dm6]	T	A	4.047e^-5	0.776	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	11005123	2L_11005123_SNP [dm3] 2L_11005123_SNP [dm6]	G	A	4.093e^-5	0.776	UPSTREAM RpL9 INTRON Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10248356	3R_10248356_SNP [dm3] 3R_14422634_SNP [dm6]	T	C	4.108e^-5	0.776	UPSTREAM CR44176 DOWNSTREAM natalisin INTRON cv-c
2R	1373350	2R_1373350_SNP [dm3] 2R_5485845_SNP [dm6]	T	C	4.116e^-5	0.776	INTRON CG30440
3R	8111456	3R_8111456_SNP [dm3] 3R_12285734_SNP [dm6]	T	C	4.130e^-5	0.776	INTRON svp
3L	7489527	3L_7489527_SNP [dm3] 3L_7496427_SNP [dm6]	C	T	4.192e^-5	0.776	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
2L	6695664	2L_6695664_SNP [dm3] 2L_6695664_SNP [dm6]	C	T	4.257e^-5	0.776	INTRON Tsp
2R	9897964	2R_9897964_SNP [dm3] 2R_14010459_SNP [dm6]	A	T	4.287e^-5	0.776	START_GAINED mam UTR_5_PRIME mam	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8020902	3R_8020902_SNP [dm3] 3R_12195180_SNP [dm6]	C	A	4.402e^-5	0.776	UPSTREAM CG43450 & 1 other INTERGENIC
3R	8017386	3R_8017386_SNP [dm3] 3R_12191664_SNP [dm6]	G	A	4.402e^-5	0.776	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10370019	2L_10370019_SNP [dm3] 2L_10370019_SNP [dm6]	A	T	4.458e^-5	0.776	INTRON rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12592690	2L_12592690_SNP [dm3] 2L_12592690_SNP [dm6]	A	G	4.490e^-5	0.776	INTRON nub
2L	11418476	2L_11418476_SNP [dm3] 2L_11418476_SNP [dm6]	T	A	4.522e^-5	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4457556	2L_4457556_SNP [dm3] 2L_4457556_SNP [dm6]	A	G	4.526e^-5	0.776	UPSTREAM Gs1l DOWNSTREAM snoRNA:Me18S-C1831 INTRON RpL27A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	475299	2L_475299_SNP [dm3] 2L_475299_SNP [dm6]	T	C	4.546e^-5	0.776	SYNONYMOUS_CODING MED15 UPSTREAM CG4297 & 1 other
2R	9108042	2R_9108042_INS [dm3] 2R_13220537_INS [dm6]	A	AGGAATTTACTTTCATCTTC...	4.576e^-5	0.776	UPSTREAM CG4646 DOWNSTREAM Fsn INTRON CG17059	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	8025360	3R_8025360_SNP [dm3] 3R_12199638_SNP [dm6]	G	A	4.581e^-5	0.776	DOWNSTREAM CG3809 INTERGENIC
3R	8026442	3R_8026442_SNP [dm3] 3R_12200720_SNP [dm6]	C	T	4.581e^-5	0.776	INTERGENIC
2L	15221857	2L_15221857_SNP [dm3] 2L_15221857_SNP [dm6]	G	A	4.660e^-5	0.776	INTERGENIC
2L	15223820	2L_15223820_SNP [dm3] 2L_15223820_SNP [dm6]	C	G	4.670e^-5	0.776	INTERGENIC
3L	12985214	3L_12985214_SNP [dm3] 3L_12992114_SNP [dm6]	T	A	4.683e^-5	0.776	INTERGENIC
3L	7489556	3L_7489556_INS [dm3] 3L_7496456_INS [dm6]	T	TCAAA	4.696e^-5	0.776	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
3L	10727221	3L_10727221_DEL [dm3] 3L_10734121_DEL [dm6]	CTCTA	GGT	4.725e^-5	0.776	INTERGENIC
2L	5617034	2L_5617034_DEL [dm3] 2L_5617034_DEL [dm6]	CT	C	4.763e^-5	0.776	INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10110904	2L_10110904_SNP [dm3] 2L_10110904_SNP [dm6]	C	T	4.896e^-5	0.776	INTRON CG44153 & 1 other
3R	8022919	3R_8022919_SNP [dm3] 3R_12197197_SNP [dm6]	A	G	4.958e^-5	0.776	UPSTREAM CG3809 INTERGENIC
3R	8114699	3R_8114699_INS [dm3] 3R_12288977_INS [dm6]	A	AAAAAAAAAAAAG...	4.959e^-5	0.776	INTRON svp
3R	8114702	3R_8114702_MNP [dm3] 3R_12288980_MNP [dm6]	GTGT	AAAA	4.959e^-5	0.776	INTRON svp
3L	9988855	3L_9988855_SNP [dm3] 3L_9995755_SNP [dm6]	A	T	4.961e^-5	0.776	INTRON dpr6
2L	12592688	2L_12592688_SNP [dm3] 2L_12592688_SNP [dm6]	C	G	5.073e^-5	0.776	INTRON nub
X	13126612	X_13126612_SNP [dm3] X_13232579_SNP [dm6]	G	T	5.133e^-5	0.776	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9345696	3L_9345696_SNP [dm3] 3L_9352596_SNP [dm6]	A	T	5.153e^-5	0.776	SPLICE_SITE_REGION UGP INTRON UGP
3R	6762060	3R_6762060_SNP [dm3] 3R_10936338_SNP [dm6]	G	C	5.192e^-5	0.776	INTERGENIC
2L	15553874	2L_15553874_SNP [dm3] 2L_15553874_SNP [dm6]	G	A	5.263e^-5	0.776	INTRON kek3
3L	11037816	3L_11037816_SNP [dm3] 3L_11044716_SNP [dm6]	G	A	5.400e^-5	0.776	INTRON CG43693	TF binding site BDTNP1_TFBS_da
X	16039960	X_16039960_SNP [dm3] X_16145927_SNP [dm6]	T	G	5.416e^-5	0.776	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
3R	8345957	3R_8345957_SNP [dm3] 3R_12520235_SNP [dm6]	C	G	5.430e^-5	0.776	INTRON Octbeta3R
2R	3812652	2R_3812652_SNP [dm3] 2R_7925147_SNP [dm6]	A	C	5.498e^-5	0.776	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	21296904	3R_21296904_SNP [dm3] 3R_25471182_SNP [dm6]	T	C	5.538e^-5	0.776	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7489481	3L_7489481_DEL [dm3] 3L_7496381_DEL [dm6]	TT	T	5.570e^-5	0.776	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
3L	17797913	3L_17797913_SNP [dm3] 3L_17804813_SNP [dm6]	T	A	5.611e^-5	0.776	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC
3R	5529882	3R_5529882_SNP [dm3] 3R_9704160_SNP [dm6]	T	G	5.640e^-5	0.776	INTRON Unc-115a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	8111740	3R_8111740_SNP [dm3] 3R_12286018_SNP [dm6]	T	A	5.742e^-5	0.776	INTRON svp
X	12421844	X_12421844_SNP [dm3] X_12527811_SNP [dm6]	A	T	5.875e^-5	0.776	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
2L	11410255	2L_11410255_SNP [dm3] 2L_11410255_SNP [dm6]	A	T	5.882e^-5	0.776	INTERGENIC	regulatory region REDfly_CRMs
2R	18015420	2R_18015420_SNP [dm3] 2R_22127915_SNP [dm6]	T	C	5.910e^-5	0.776	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D
2L	2255285	2L_2255285_SNP [dm3] 2L_2255285_SNP [dm6]	G	T	6.053e^-5	0.776	UPSTREAM Send1 INTERGENIC
X	13996579	X_13996579_SNP [dm3] X_14102546_SNP [dm6]	A	T	6.087e^-5	0.776	DOWNSTREAM tRNA:S4:12Ee INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4966134	X_4966134_SNP [dm3] X_5072101_SNP [dm6]	A	T	6.182e^-5	0.776	UTR_3_PRIME CG32767
3R	8138964	3R_8138964_SNP [dm3] 3R_12313242_SNP [dm6]	A	C	6.214e^-5	0.776	DOWNSTREAM CG4066 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14332976	3R_14332976_SNP [dm3] 3R_18507254_SNP [dm6]	C	T	6.248e^-5	0.776	UPSTREAM fru INTRON fru	TF binding site mE1_TFBS_HSA
2L	14276056	2L_14276056_SNP [dm3] 2L_14276056_SNP [dm6]	G	A	6.311e^-5	0.776	INTRON wb & 1 other
3R	8009115	3R_8009115_SNP [dm3] 3R_12183393_SNP [dm6]	G	A	6.401e^-5	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6274150	2L_6274150_SNP [dm3] 2L_6274150_SNP [dm6]	G	T	6.453e^-5	0.776	INTRON Ddr
3L	16953872	3L_16953872_SNP [dm3] 3L_16960772_SNP [dm6]	C	A	6.517e^-5	0.776	INTRON Nc73EF
2R	1778665	2R_1778665_SNP [dm3] 2R_5891160_SNP [dm6]	C	T	6.587e^-5	0.776	INTERGENIC
3R	14549320	3R_14549320_SNP [dm3] 3R_18723598_SNP [dm6]	C	T	6.658e^-5	0.776	INTRON Cha
3L	21595047	3L_21595047_SNP [dm3] 3L_21601947_SNP [dm6]	C	G	6.787e^-5	0.776	INTRON TfAP-2	TF binding site mE1_TFBS_cad
2L	10034884	2L_10034884_SNP [dm3] 2L_10034884_SNP [dm6]	G	T	6.796e^-5	0.776	INTRON obst-B
3L	12437235	3L_12437235_SNP [dm3] 3L_12444135_SNP [dm6]	T	A	6.798e^-5	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12437238	3L_12437238_SNP [dm3] 3L_12444138_SNP [dm6]	C	T	6.798e^-5	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12168847	X_12168847_SNP [dm3] X_12274814_SNP [dm6]	T	G	6.821e^-5	0.776	NON_SYNONYMOUS_CODING CG45603 INTRON Ten-a
2R	12342391	2R_12342391_SNP [dm3] 2R_16454886_SNP [dm6]	G	A	6.841e^-5	0.776	INTERGENIC
3R	14548928	3R_14548928_SNP [dm3] 3R_18723206_SNP [dm6]	G	A	6.873e^-5	0.776	UPSTREAM CG34283 INTRON Cha	transposable element FlyBase
X	13996631	X_13996631_SNP [dm3] X_14102598_SNP [dm6]	A	C	6.887e^-5	0.776	DOWNSTREAM tRNA:S4:12Ee INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5208926	X_5208926_SNP [dm3] X_5314893_SNP [dm6]	G	A	6.924e^-5	0.776	SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site mE1_TFBS_chinmo
X	4448543	X_4448543_SNP [dm3] X_4554510_SNP [dm6]	C	A	6.991e^-5	0.776	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11419351	2L_11419351_SNP [dm3] 2L_11419351_SNP [dm6]	G	T	6.996e^-5	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8098327	3R_8098327_SNP [dm3] 3R_12272605_SNP [dm6]	C	T	7.000e^-5	0.776	UPSTREAM Sfp87B INTRON svp
3L	19083515	3L_19083515_SNP [dm3] 3L_19090415_SNP [dm6]	A	G	7.013e^-5	0.776	UPSTREAM CR45386 INTERGENIC
3R	2795128	3R_2795128_SNP [dm3] 3R_6969406_SNP [dm6]	C	T	7.015e^-5	0.776	INTRON Antp	TF binding site mE1_TFBS_inv
3R	24667487	3R_24667487_DEL [dm3] 3R_28841765_DEL [dm6]	TT	T	7.096e^-5	0.776	INTRON Apc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	21086882	2R_21086882_DEL [dm3] 2R_25199359_DEL [dm6]	CA	C	7.140e^-5	0.776	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8131530	2L_8131530_SNP [dm3] 2L_8131530_SNP [dm6]	T	G	7.213e^-5	0.776	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da
3R	25070932	3R_25070932_SNP [dm3] 3R_29245210_SNP [dm6]	A	G	7.233e^-5	0.776	SYNONYMOUS_CODING SP1029 UPSTREAM CG31445	TF binding site mE1_TFBS_cad
2L	150371	2L_150371_DEL [dm3] 2L_150371_DEL [dm6]	CATGC	C	7.291e^-5	0.776	INTRON CG11455 & 1 other
3L	15257343	3L_15257343_SNP [dm3] 3L_15264243_SNP [dm6]	A	C	7.298e^-5	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7150675	3L_7150675_SNP [dm3] 3L_7157575_SNP [dm6]	A	G	7.352e^-5	0.776	UPSTREAM corn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	14189516	3L_14189516_SNP [dm3] 3L_14196416_SNP [dm6]	G	T	7.378e^-5	0.776	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	3602986	2R_3602986_SNP [dm3] 2R_7715481_SNP [dm6]	T	G	7.445e^-5	0.776	INTRON CG1946
2R	19926295	2R_19926295_SNP [dm3] 2R_24038772_SNP [dm6]	C	A	7.450e^-5	0.776	SYNONYMOUS_CODING IntS1 UPSTREAM Not11	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12421861	X_12421861_SNP [dm3] X_12527828_SNP [dm6]	A	G	7.494e^-5	0.776	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
2L	9537829	2L_9537829_SNP [dm3] 2L_9537829_SNP [dm6]	A	G	7.524e^-5	0.776	SYNONYMOUS_CODING Oatp30B
3R	2515731	3R_2515731_SNP [dm3] 3R_6690009_SNP [dm6]	G	A	7.619e^-5	0.776	SYNONYMOUS_CODING Ccp84Af DOWNSTREAM Ccp84Ae
2R	5755529	2R_5755529_SNP [dm3] 2R_9868024_SNP [dm6]	C	T	7.665e^-5	0.776	UPSTREAM CR45138 INTRON cbx	transposable element FlyBase
2L	22956969	2L_22956969_SNP [dm3] 2L_23064237_SNP [dm6]	A	T	7.680e^-5	0.776	INTERGENIC
2R	8933041	2R_8933041_SNP [dm3] 2R_13045536_SNP [dm6]	T	C	7.703e^-5	0.776	UTR_3_PRIME CG13323
3R	5438426	3R_5438426_SNP [dm3] 3R_9612704_SNP [dm6]	G	A	7.715e^-5	0.776	INTRON CG8312
3R	8108062	3R_8108062_SNP [dm3] 3R_12282340_SNP [dm6]	A	G	7.752e^-5	0.776	INTRON svp	TF binding site mE1_TFBS_sens
2L	12592685	2L_12592685_SNP [dm3] 2L_12592685_SNP [dm6]	T	A	7.759e^-5	0.776	INTRON nub
2L	12306993	2L_12306993_SNP [dm3] 2L_12306993_SNP [dm6]	T	C	7.815e^-5	0.776	INTRON aret
2R	12612716	2R_12612716_SNP [dm3] 2R_16725211_SNP [dm6]	A	G	7.834e^-5	0.776	INTRON CG30463
2R	16934520	2R_16934520_SNP [dm3] 2R_21047015_SNP [dm6]	T	C	7.862e^-5	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11641380	2R_11641380_SNP [dm3] 2R_15753875_SNP [dm6]	T	A	7.867e^-5	0.776	INTRON CG30089	TF binding site BDTNP1_TFBS_twi
2L	15199800	2L_15199800_SNP [dm3] 2L_15199800_SNP [dm6]	A	G	8.003e^-5	0.776	INTRON CG4168
2L	156085	2L_156085_SNP [dm3] 2L_156085_SNP [dm6]	C	A	8.045e^-5	0.776	UTR_5_PRIME CG3436 UPSTREAM CG3436 & 1 other DOWNSTREAM CG11455	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	11005349	2L_11005349_SNP [dm3] 2L_11005349_SNP [dm6]	T	C	8.064e^-5	0.776	INTRON Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11148195	2L_11148195_SNP [dm3] 2L_11148195_SNP [dm6]	A	T	8.109e^-5	0.776	INTRON Gyc32E
3L	7307650	3L_7307650_SNP [dm3] 3L_7314550_SNP [dm6]	A	T	8.118e^-5	0.776	INTERGENIC
3R	8024867	3R_8024867_SNP [dm3] 3R_12199145_SNP [dm6]	C	T	8.128e^-5	0.776	SYNONYMOUS_CODING CG3809
3R	8106065	3R_8106065_SNP [dm3] 3R_12280343_SNP [dm6]	C	T	8.177e^-5	0.776	UPSTREAM svp INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	20816513	2L_20816513_SNP [dm3] 2L_20816513_SNP [dm6]	C	T	8.180e^-5	0.776	UTR_3_PRIME CheB38b UPSTREAM CG33322
2L	21764213	2L_21764213_SNP [dm3] 2L_21764213_SNP [dm6]	A	G	8.195e^-5	0.776	INTRON CG31612
2L	11829242	2L_11829242_SNP [dm3] 2L_11829242_SNP [dm6]	C	A	8.203e^-5	0.776	UTR_5_PRIME esc INTRON Pde1c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16230792	2L_16230792_SNP [dm3] 2L_16230792_SNP [dm6]	T	G	8.243e^-5	0.776	UPSTREAM CG42817 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	2359671	3L_2359671_SNP [dm3] 3L_2359671_SNP [dm6]	C	A	8.304e^-5	0.776	UPSTREAM CG13801 INTERGENIC
2R	5706048	2R_5706048_SNP [dm3] 2R_9818543_SNP [dm6]	A	T	8.326e^-5	0.776	DOWNSTREAM lectin-46Ca INTRON CG1648
3R	6737083	3R_6737083_SNP [dm3] 3R_10911361_SNP [dm6]	C	T	8.379e^-5	0.776	INTERGENIC
X	18970816	X_18970816_SNP [dm3] X_19076783_SNP [dm6]	T	C	8.415e^-5	0.776	UPSTREAM CG7406 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5878881	2L_5878881_SNP [dm3] 2L_5878881_SNP [dm6]	G	T	8.490e^-5	0.776	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9985612	3L_9985612_SNP [dm3] 3L_9992512_SNP [dm6]	G	C	8.492e^-5	0.776	INTRON dpr6
3L	14189106	3L_14189106_DEL [dm3] 3L_14196006_DEL [dm6]	GG	G	8.516e^-5	0.776	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11420040	2L_11420040_SNP [dm3] 2L_11420040_SNP [dm6]	A	T	8.539e^-5	0.776	INTERGENIC	TF binding site mE1_TFBS_sens
3L	9988799	3L_9988799_SNP [dm3] 3L_9995699_SNP [dm6]	A	C	8.572e^-5	0.776	INTRON dpr6
3R	7841791	3R_7841791_SNP [dm3] 3R_12016069_SNP [dm6]	C	T	8.590e^-5	0.776	SYNONYMOUS_CODING CG3313	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	6137320	X_6137320_SNP [dm3] X_6243287_SNP [dm6]	T	G	8.614e^-5	0.776	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11199026	X_11199026_SNP [dm3] X_11304993_SNP [dm6]	T	C	8.673e^-5	0.776	INTERGENIC
X	8178751	X_8178751_SNP [dm3] X_8284718_SNP [dm6]	T	G	8.705e^-5	0.776	INTRON nAChRalpha3
2L	16161352	2L_16161352_SNP [dm3] 2L_16161352_SNP [dm6]	C	T	8.706e^-5	0.776	INTERGENIC
2L	14279485	2L_14279485_DEL [dm3] 2L_14279485_DEL [dm6]	CT	C	8.800e^-5	0.776	INTRON wb
2L	12668701	2L_12668701_SNP [dm3] 2L_12668701_SNP [dm6]	G	A	8.801e^-5	0.776	NON_SYNONYMOUS_CODING CG15485 INTRON pdm2
3R	8028312	3R_8028312_SNP [dm3] 3R_12202590_SNP [dm6]	A	T	8.874e^-5	0.776	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	16230363	2L_16230363_SNP [dm3] 2L_16230363_SNP [dm6]	A	T	8.936e^-5	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	13126659	X_13126659_SNP [dm3] X_13232626_SNP [dm6]	A	C	8.964e^-5	0.776	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9956630	2R_9956630_SNP [dm3] 2R_14069125_SNP [dm6]	G	C	8.973e^-5	0.776	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7141776	X_7141776_SNP [dm3] X_7247743_SNP [dm6]	A	G	9.084e^-5	0.776	INTRON CR44357	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	4901021	2L_4901021_SNP [dm3] 2L_4901021_SNP [dm6]	G	A	9.088e^-5	0.776	INTRON CG3036
2R	14883324	2R_14883324_INS [dm3] 2R_18995819_INS [dm6]	T	TAAT	9.145e^-5	0.776	DOWNSTREAM snoRNA:abba-a INTRON tn
3R	8023126	3R_8023126_SNP [dm3] 3R_12197404_SNP [dm6]	G	A	9.150e^-5	0.776	UPSTREAM CG3809 INTERGENIC
2L	20816508	2L_20816508_SNP [dm3] 2L_20816508_SNP [dm6]	A	T	9.204e^-5	0.776	UTR_3_PRIME CheB38b UPSTREAM CG33322
2L	12260860	2L_12260860_SNP [dm3] 2L_12260860_SNP [dm6]	G	A	9.211e^-5	0.776	INTRON aret
3R	3156614	3R_3156614_SNP [dm3] 3R_7330892_SNP [dm6]	T	C	9.262e^-5	0.776	UPSTREAM CR44337 INTERGENIC
3R	8110310	3R_8110310_SNP [dm3] 3R_12284588_SNP [dm6]	C	T	9.324e^-5	0.776	INTRON svp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	18510010	2L_18510010_SNP [dm3] 2L_18510010_SNP [dm6]	C	A	9.342e^-5	0.776	INTRON CG10178
3R	27145772	3R_27145772_SNP [dm3] 3R_31320050_SNP [dm6]	T	A	9.359e^-5	0.776	INTRON CG34347
2R	11736495	2R_11736495_SNP [dm3] 2R_15848990_SNP [dm6]	C	T	9.385e^-5	0.776	UTR_5_PRIME tun
2L	15260816	2L_15260816_SNP [dm3] 2L_15260816_SNP [dm6]	T	C	9.386e^-5	0.776	DOWNSTREAM yuri INTRON yuri
3L	18836793	3L_18836793_SNP [dm3] 3L_18843693_SNP [dm6]	A	C	9.437e^-5	0.776	DOWNSTREAM CR32027 INTRON Indy
X	10807354	X_10807354_SNP [dm3] X_10913321_SNP [dm6]	G	C	9.512e^-5	0.779	INTRON CG43901
3R	26404961	3R_26404961_SNP [dm3] 3R_30579239_SNP [dm6]	G	T	9.665e^-5	0.784	UPSTREAM CG9702 DOWNSTREAM tmod INTERGENIC
2L	5438814	2L_5438814_SNP [dm3] 2L_5438814_SNP [dm6]	A	G	9.676e^-5	0.784	INTRON CR31647
3L	11038163	3L_11038163_SNP [dm3] 3L_11045063_SNP [dm6]	T	C	9.709e^-5	0.784	INTRON CG43693	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	8025430	3R_8025430_SNP [dm3] 3R_12199708_SNP [dm6]	G	C	9.735e^-5	0.784	DOWNSTREAM CG3809 INTERGENIC
3R	26079764	3R_26079764_SNP [dm3] 3R_30254042_SNP [dm6]	G	A	9.898e^-5	0.789	SYNONYMOUS_STOP CG18404
2L	14945763	2L_14945763_SNP [dm3] 2L_14945763_SNP [dm6]	T	A	9.911e^-5	0.789	INTRON CG42313
3R	7026916	3R_7026916_SNP [dm3] 3R_11201194_SNP [dm6]	G	C	9.932e^-5	0.789	INTRON cu
2L	11372057	2L_11372057_SNP [dm3] 2L_11372057_SNP [dm6]	G	A	9.985e^-5	0.79	NON_SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5755461	2L_5755461_SNP [dm3] 2L_5755461_SNP [dm6]	A	T	1.002e^-4	0.79	INTRON CG11030
X	18173239	X_18173239_SNP [dm3] X_18279206_SNP [dm6]	G	A	1.008e^-4	0.79	INTRON upd3
2L	9535973	2L_9535973_SNP [dm3] 2L_9535973_SNP [dm6]	G	A	1.016e^-4	0.79	INTRON Oatp30B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9376928	2L_9376928_SNP [dm3] 2L_9376928_SNP [dm6]	C	A	1.020e^-4	0.79	INTRON Shawl
3L	6091658	3L_6091658_SNP [dm3] 3L_6098558_SNP [dm6]	G	C	1.026e^-4	0.79	INTRON Ets65A	TF binding site mE1_TFBS_cad
2R	3812632	2R_3812632_SNP [dm3] 2R_7925127_SNP [dm6]	A	T	1.033e^-4	0.79	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	16447593	2L_16447593_SNP [dm3] 2L_16447593_SNP [dm6]	G	A	1.038e^-4	0.79	DOWNSTREAM Idgf1 INTRON CG5888 & 1 other
3R	8029537	3R_8029537_SNP [dm3] 3R_12203815_SNP [dm6]	G	A	1.040e^-4	0.79	INTERGENIC
3R	6724126	3R_6724126_SNP [dm3] 3R_10898404_SNP [dm6]	T	C	1.045e^-4	0.79	EXON CR45578	TF binding site mE1_TFBS_sbb
2L	9538514	2L_9538514_SNP [dm3] 2L_9538514_SNP [dm6]	G	C	1.047e^-4	0.79	NON_SYNONYMOUS_CODING Oatp30B	TF binding site mE1_TFBS_sens
2R	11982058	2R_11982058_SNP [dm3] 2R_16094553_SNP [dm6]	T	A	1.052e^-4	0.79	INTRON Dg	TF binding site BDTNP1_TFBS_twi
X	8129911	X_8129911_SNP [dm3] X_8235878_SNP [dm6]	C	G	1.052e^-4	0.79	SPLICE_SITE_REGION sdt INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7101213	3R_7101213_SNP [dm3] 3R_11275491_SNP [dm6]	A	T	1.056e^-4	0.79	INTRON CR31386
2L	18555189	2L_18555189_SNP [dm3] 2L_18555189_SNP [dm6]	C	T	1.057e^-4	0.79	INTRON Pde11	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7099727	3R_7099727_SNP [dm3] 3R_11274005_SNP [dm6]	T	A	1.068e^-4	0.794	INTRON CR31386
2L	11903894	2L_11903894_SNP [dm3] 2L_11903894_SNP [dm6]	T	C	1.085e^-4	0.794	INTRON Pde1c
2L	18538529	2L_18538529_SNP [dm3] 2L_18538529_SNP [dm6]	G	A	1.087e^-4	0.794	INTRON Pde11	TF binding site mE1_TFBS_HSA
3L	7397307	3L_7397307_SNP [dm3] 3L_7404207_SNP [dm6]	T	A	1.106e^-4	0.794	UPSTREAM CG8560 INTERGENIC
3L	7397478	3L_7397478_SNP [dm3] 3L_7404378_SNP [dm6]	C	A	1.115e^-4	0.794	UPSTREAM CG8560 INTERGENIC
3R	7063714	3R_7063714_SNP [dm3] 3R_11237992_SNP [dm6]	G	C	1.126e^-4	0.794	DOWNSTREAM CG31441 INTRON CG31388	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	3518947	X_3518947_SNP [dm3] X_3624914_SNP [dm6]	T	C	1.132e^-4	0.794	INTRON AstA-R1
X	3518998	X_3518998_DEL [dm3] X_3624965_DEL [dm6]	TTTT	T	1.132e^-4	0.794	INTRON AstA-R1
X	3519015	X_3519015_SNP [dm3] X_3624982_SNP [dm6]	G	A	1.132e^-4	0.794	INTRON AstA-R1
X	18173144	X_18173144_SNP [dm3] X_18279111_SNP [dm6]	G	A	1.135e^-4	0.794	INTRON upd3
2L	3152960	2L_3152960_SNP [dm3] 2L_3152960_SNP [dm6]	A	G	1.136e^-4	0.794	UPSTREAM Mad INTRON Mad	TF binding site BDTNP1_TFBS_dl
2L	7968297	2L_7968297_SNP [dm3] 2L_7968297_SNP [dm6]	T	G	1.147e^-4	0.794	INTRON Snoo
3L	9988866	3L_9988866_SNP [dm3] 3L_9995766_SNP [dm6]	C	G	1.148e^-4	0.794	INTRON dpr6
2L	7440798	2L_7440798_SNP [dm3] 2L_7440798_SNP [dm6]	A	T	1.156e^-4	0.794	UTR_5_PRIME CG5973 INTRON CG5973
3R	2789418	3R_2789418_SNP [dm3] 3R_6963696_SNP [dm6]	G	A	1.157e^-4	0.794	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17915865	2L_17915865_DEL [dm3] 2L_17915865_DEL [dm6]	AG	A	1.157e^-4	0.794	UPSTREAM CG43271 INTERGENIC
2R	9956629	2R_9956629_SNP [dm3] 2R_14069124_SNP [dm6]	G	A	1.158e^-4	0.794	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17105937	X_17105937_SNP [dm3] X_17211904_SNP [dm6]	A	G	1.164e^-4	0.794	UPSTREAM CG18258 INTERGENIC
X	8365380	X_8365380_SNP [dm3] X_8471347_SNP [dm6]	A	C	1.168e^-4	0.794	INTRON CG33223 & 1 other
2L	11386974	2L_11386974_SNP [dm3] 2L_11386974_SNP [dm6]	T	C	1.172e^-4	0.794	DOWNSTREAM CR43681 INTERGENIC	regulatory region REDfly_CRMs
X	8914043	X_8914043_SNP [dm3] X_9020010_SNP [dm6]	T	A	1.172e^-4	0.794	SYNONYMOUS_CODING rdgA INTRON CR43836
2L	18675915	2L_18675915_SNP [dm3] 2L_18675915_SNP [dm6]	T	C	1.174e^-4	0.794	NON_SYNONYMOUS_CODING Mst36Fa UPSTREAM Mst36Fb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8007402	3R_8007402_SNP [dm3] 3R_12181680_SNP [dm6]	A	T	1.184e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	22327224	2L_22327224_SNP [dm3] 2L_22327224_SNP [dm6]	A	G	1.186e^-4	0.794	INTRON CG17018	transposable element FlyBase
2L	13051563	2L_13051563_SNP [dm3] 2L_13051563_SNP [dm6]	T	G	1.186e^-4	0.794	INTRON CG9932
2L	10802451	2L_10802451_SNP [dm3] 2L_10802451_SNP [dm6]	T	G	1.199e^-4	0.794	INTRON CR44581
3L	11039110	3L_11039110_SNP [dm3] 3L_11046010_SNP [dm6]	A	G	1.203e^-4	0.794	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	11633126	2L_11633126_SNP [dm3] 2L_11633126_SNP [dm6]	C	T	1.205e^-4	0.794	INTERGENIC
2L	14442457	2L_14442457_SNP [dm3] 2L_14442457_SNP [dm6]	G	C	1.216e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6393620	2R_6393620_SNP [dm3] 2R_10506115_SNP [dm6]	T	G	1.217e^-4	0.794	INTRON lola	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12790537	2R_12790537_SNP [dm3] 2R_16903032_SNP [dm6]	C	A	1.218e^-4	0.794	INTERGENIC
3L	9988842	3L_9988842_SNP [dm3] 3L_9995742_SNP [dm6]	T	A	1.218e^-4	0.794	INTRON dpr6
3L	14210894	3L_14210894_SNP [dm3] 3L_14217794_SNP [dm6]	T	G	1.228e^-4	0.794	UPSTREAM CG7768 INTRON nuf
3L	14189114	3L_14189114_DEL [dm3] 3L_14196014_DEL [dm6]	GAGAGATAAAAGTAG...	G	1.231e^-4	0.794	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	475206	2L_475206_SNP [dm3] 2L_475206_SNP [dm6]	A	T	1.238e^-4	0.794	UPSTREAM CG4297 INTRON MED15
2L	14449738	2L_14449738_SNP [dm3] 2L_14449738_SNP [dm6]	T	C	1.255e^-4	0.794	UPSTREAM CR45726 DOWNSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	12911726	2L_12911726_SNP [dm3] 2L_12911726_SNP [dm6]	A	G	1.256e^-4	0.794	UPSTREAM ACXC INTERGENIC
2R	10616831	2R_10616831_SNP [dm3] 2R_14729326_SNP [dm6]	A	G	1.263e^-4	0.794	INTERGENIC
2L	14012555	2L_14012555_SNP [dm3] 2L_14012555_SNP [dm6]	T	C	1.271e^-4	0.794	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13789679	2R_13789679_SNP [dm3] 2R_17902174_SNP [dm6]	C	T	1.279e^-4	0.794	INTRON Elk
X	13253734	X_13253734_SNP [dm3] X_13359701_SNP [dm6]	C	T	1.288e^-4	0.794	INTRON Syt12
2L	19099360	2L_19099360_SNP [dm3] 2L_19099360_SNP [dm6]	T	G	1.292e^-4	0.794	INTRON Lim3
3R	8008993	3R_8008993_SNP [dm3] 3R_12183271_SNP [dm6]	C	G	1.293e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13598053	3L_13598053_SNP [dm3] 3L_13604953_SNP [dm6]	A	G	1.294e^-4	0.794	INTRON bru-3
3L	18269518	3L_18269518_SNP [dm3] 3L_18276418_SNP [dm6]	A	G	1.300e^-4	0.794	INTERGENIC
2R	10526798	2R_10526798_SNP [dm3] 2R_14639293_SNP [dm6]	C	T	1.302e^-4	0.794	NON_SYNONYMOUS_CODING CG42715 DOWNSTREAM CG43236 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15518076	2L_15518076_SNP [dm3] 2L_15518076_SNP [dm6]	A	G	1.316e^-4	0.794	INTERGENIC
2R	9053593	2R_9053593_SNP [dm3] 2R_13166088_SNP [dm6]	C	A	1.325e^-4	0.794	INTRON GLaz
2L	16230365	2L_16230365_SNP [dm3] 2L_16230365_SNP [dm6]	A	T	1.327e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	11413883	2L_11413883_SNP [dm3] 2L_11413883_SNP [dm6]	T	C	1.327e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	8878152	3L_8878152_SNP [dm3] 3L_8885052_SNP [dm6]	T	C	1.332e^-4	0.794	INTRON dally
2L	9097545	2L_9097545_SNP [dm3] 2L_9097545_SNP [dm6]	C	A	1.332e^-4	0.794	UPSTREAM CG31609 INTERGENIC
3L	11037462	3L_11037462_SNP [dm3] 3L_11044362_SNP [dm6]	A	G	1.339e^-4	0.794	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
3L	11037469	3L_11037469_SNP [dm3] 3L_11044369_SNP [dm6]	G	A	1.339e^-4	0.794	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
X	4966328	X_4966328_SNP [dm3] X_5072295_SNP [dm6]	T	C	1.340e^-4	0.794	UTR_3_PRIME CG32767
3L	21758012	3L_21758012_SNP [dm3] 3L_21764912_SNP [dm6]	T	C	1.346e^-4	0.794	INTRON Syn1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
2L	20137675	2L_20137675_SNP [dm3] 2L_20137675_SNP [dm6]	C	G	1.348e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14552756	3R_14552756_SNP [dm3] 3R_18727034_SNP [dm6]	A	T	1.353e^-4	0.794	UPSTREAM CG7714 DOWNSTREAM CG7715 INTRON Cha
2R	8410480	2R_8410480_SNP [dm3] 2R_12522975_SNP [dm6]	G	T	1.355e^-4	0.794	DOWNSTREAM CG33632 INTERGENIC	transposable element FlyBase
2R	8410494	2R_8410494_SNP [dm3] 2R_12522989_SNP [dm6]	G	A	1.355e^-4	0.794	DOWNSTREAM CG33632 INTERGENIC	transposable element FlyBase
2L	12031175	2L_12031175_SNP [dm3] 2L_12031175_SNP [dm6]	A	G	1.359e^-4	0.794	INTRON dmGlut
3L	11037451	3L_11037451_SNP [dm3] 3L_11044351_SNP [dm6]	A	T	1.360e^-4	0.794	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
3L	11037455	3L_11037455_SNP [dm3] 3L_11044355_SNP [dm6]	A	T	1.360e^-4	0.794	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
3R	8013812	3R_8013812_SNP [dm3] 3R_12188090_SNP [dm6]	C	A	1.363e^-4	0.794	INTERGENIC
3R	14815882	3R_14815882_SNP [dm3] 3R_18990160_SNP [dm6]	G	T	1.372e^-4	0.794	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12542111	X_12542111_SNP [dm3] X_12648078_SNP [dm6]	C	G	1.380e^-4	0.794	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	606266	X_606266_SNP [dm3] X_712233_SNP [dm6]	G	A	1.382e^-4	0.794	INTRON sdk
2L	262825	2L_262825_SNP [dm3] 2L_262825_SNP [dm6]	C	A	1.384e^-4	0.794	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 INTRON CG3645 EXON CR44219
2R	3812634	2R_3812634_DEL [dm3] 2R_7925129_DEL [dm6]	TGGAAATTAAATGAA...	T	1.386e^-4	0.794	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	1282405	2L_1282405_SNP [dm3] 2L_1282405_SNP [dm6]	A	C	1.390e^-4	0.794	INTRON robo3
3L	12283596	3L_12283596_SNP [dm3] 3L_12290496_SNP [dm6]	T	G	1.390e^-4	0.794	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	6416319	2L_6416319_SNP [dm3] 2L_6416319_SNP [dm6]	A	G	1.395e^-4	0.794	SYNONYMOUS_CODING Tig DOWNSTREAM CG13982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	18430931	2L_18430931_INS [dm3] 2L_18430931_INS [dm6]	T	TC	1.395e^-4	0.794	INTERGENIC
2L	617998	2L_617998_SNP [dm3] 2L_617998_SNP [dm6]	C	T	1.399e^-4	0.794	INTERGENIC
3R	8096706	3R_8096706_SNP [dm3] 3R_12270984_SNP [dm6]	A	G	1.400e^-4	0.794	NON_SYNONYMOUS_CODING CG17738 DOWNSTREAM CR44039 INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16029350	3L_16029350_SNP [dm3] 3L_16036250_SNP [dm6]	G	T	1.402e^-4	0.794	SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_twi
X	8129943	X_8129943_SNP [dm3] X_8235910_SNP [dm6]	C	A	1.408e^-4	0.794	SYNONYMOUS_CODING sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18268240	2L_18268240_SNP [dm3] 2L_18268240_SNP [dm6]	A	G	1.413e^-4	0.794	INTRON CG42750
3L	6091791	3L_6091791_SNP [dm3] 3L_6098691_SNP [dm6]	A	T	1.416e^-4	0.794	INTRON Ets65A
3R	2795101	3R_2795101_SNP [dm3] 3R_6969379_SNP [dm6]	A	G	1.421e^-4	0.794	INTRON Antp	TF binding site mE1_TFBS_inv
2L	12592679	2L_12592679_SNP [dm3] 2L_12592679_SNP [dm6]	C	T	1.422e^-4	0.794	INTRON nub
3L	1264568	3L_1264568_SNP [dm3] 3L_1264568_SNP [dm6]	A	G	1.428e^-4	0.794	INTRON CG9134
3R	7972279	3R_7972279_SNP [dm3] 3R_12146557_SNP [dm6]	A	T	1.434e^-4	0.794	INTRON dpr15
3R	7801608	3R_7801608_SNP [dm3] 3R_11975886_SNP [dm6]	A	T	1.438e^-4	0.794	UPSTREAM Tango9 INTRON CG10005	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9956620	2R_9956620_SNP [dm3] 2R_14069115_SNP [dm6]	G	T	1.438e^-4	0.794	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14548894	2L_14548894_SNP [dm3] 2L_14548894_SNP [dm6]	T	A	1.442e^-4	0.794	SYNONYMOUS_CODING CG4218
X	3446255	X_3446255_SNP [dm3] X_3552222_SNP [dm6]	C	T	1.446e^-4	0.794	INTRON CG32791
3L	14200523	3L_14200523_SNP [dm3] 3L_14207423_SNP [dm6]	T	A	1.450e^-4	0.794	UTR_5_PRIME nuf INTRON nuf	TF binding site BDTNP1_TFBS_slp1
3L	18836906	3L_18836906_SNP [dm3] 3L_18843806_SNP [dm6]	C	T	1.450e^-4	0.794	INTRON Indy
2L	15256983	2L_15256983_SNP [dm3] 2L_15256983_SNP [dm6]	T	C	1.453e^-4	0.794	SYNONYMOUS_CODING l_2_35Cc UPSTREAM Pol32 DOWNSTREAM yuri	TF binding site mE1_TFBS_sens
2L	14780110	2L_14780110_SNP [dm3] 2L_14780110_SNP [dm6]	C	T	1.459e^-4	0.794	INTERGENIC
2L	19099359	2L_19099359_SNP [dm3] 2L_19099359_SNP [dm6]	A	G	1.465e^-4	0.794	INTRON Lim3
2L	156084	2L_156084_SNP [dm3] 2L_156084_SNP [dm6]	T	G	1.465e^-4	0.794	UTR_5_PRIME CG3436 UPSTREAM CG3436 & 1 other DOWNSTREAM CG11455	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	18293843	2L_18293843_SNP [dm3] 2L_18293843_SNP [dm6]	A	T	1.471e^-4	0.794	UPSTREAM CG5790 EXON CR43358
3R	8109644	3R_8109644_INS [dm3] 3R_12283922_INS [dm6]	T	TT	1.471e^-4	0.794	INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4509502	2R_4509502_SNP [dm3] 2R_8621997_SNP [dm6]	C	T	1.477e^-4	0.794	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10217782	3R_10217782_SNP [dm3] 3R_14392060_SNP [dm6]	T	C	1.482e^-4	0.794	UTR_3_PRIME cv-c	TF binding site mE1_TFBS_zfh1
3L	7149669	3L_7149669_SNP [dm3] 3L_7156569_SNP [dm6]	A	G	1.483e^-4	0.794	UTR_5_PRIME corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9956632	2R_9956632_SNP [dm3] 2R_14069127_SNP [dm6]	T	C	1.487e^-4	0.794	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9956640	2R_9956640_SNP [dm3] 2R_14069135_SNP [dm6]	T	A	1.487e^-4	0.794	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12120428	2R_12120428_SNP [dm3] 2R_16232923_SNP [dm6]	T	G	1.494e^-4	0.794	INTRON CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7517163	3L_7517163_SNP [dm3] 3L_7524063_SNP [dm6]	T	C	1.499e^-4	0.794	INTRON ltl
3R	20535133	3R_20535133_SNP [dm3] 3R_24709411_SNP [dm6]	G	A	1.499e^-4	0.794	UTR_3_PRIME slo
X	2652997	X_2652997_SNP [dm3] X_2758964_SNP [dm6]	T	A	1.511e^-4	0.795	INTRON kirre
3R	17810145	3R_17810145_SNP [dm3] 3R_21984423_SNP [dm6]	A	G	1.517e^-4	0.795	INTRON Eip93F
2L	11415098	2L_11415098_SNP [dm3] 2L_11415098_SNP [dm6]	T	G	1.523e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	11643694	3L_11643694_SNP [dm3] 3L_11650594_SNP [dm6]	A	T	1.523e^-4	0.795	UTR_3_PRIME CG32085 DOWNSTREAM CG7339
2L	11920141	2L_11920141_SNP [dm3] 2L_11920141_SNP [dm6]	A	T	1.524e^-4	0.795	INTRON Pde1c
3L	11437835	3L_11437835_SNP [dm3] 3L_11444735_SNP [dm6]	C	T	1.532e^-4	0.795	UPSTREAM CG7557 EXON CR44549
2R	9685724	2R_9685724_SNP [dm3] 2R_13798219_SNP [dm6]	C	T	1.540e^-4	0.795	INTRON Cpr50Cb
3R	5640267	3R_5640267_SNP [dm3] 3R_9814545_SNP [dm6]	G	C	1.545e^-4	0.795	NON_SYNONYMOUS_CODING eloF UPSTREAM CR44035 DOWNSTREAM CG8534	TF binding site mE1_TFBS_sens
2R	3264528	2R_3264528_SNP [dm3] 2R_7377023_SNP [dm6]	C	T	1.545e^-4	0.795	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9897902	3R_9897902_DEL [dm3] 3R_14072180_DEL [dm6]	AAAA	G	1.548e^-4	0.795	INTRON foxo
3R	19324358	3R_19324358_SNP [dm3] 3R_23498636_SNP [dm6]	C	A	1.551e^-4	0.795	INTERGENIC
2R	18015452	2R_18015452_SNP [dm3] 2R_22127947_SNP [dm6]	A	G	1.551e^-4	0.795	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad
2L	15225724	2L_15225724_SNP [dm3] 2L_15225724_SNP [dm6]	T	G	1.560e^-4	0.797	INTERGENIC
2L	11418569	2L_11418569_SNP [dm3] 2L_11418569_SNP [dm6]	A	C	1.566e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18837007	3L_18837007_SNP [dm3] 3L_18843907_SNP [dm6]	A	T	1.577e^-4	0.798	INTRON Indy
X	5818542	X_5818542_SNP [dm3] X_5924509_SNP [dm6]	T	C	1.582e^-4	0.798	INTRON CG3726
2L	18555274	2L_18555274_SNP [dm3] 2L_18555274_SNP [dm6]	A	C	1.583e^-4	0.798	INTRON Pde11	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12488483	2R_12488483_SNP [dm3] 2R_16600978_SNP [dm6]	A	C	1.589e^-4	0.798	DOWNSTREAM CG5089 INTRON CG8303
3R	25405873	3R_25405873_SNP [dm3] 3R_29580151_SNP [dm6]	T	C	1.590e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15553867	2L_15553867_SNP [dm3] 2L_15553867_SNP [dm6]	G	T	1.592e^-4	0.798	INTRON kek3
2L	11847311	2L_11847311_SNP [dm3] 2L_11847311_SNP [dm6]	G	A	1.595e^-4	0.798	SYNONYMOUS_CODING Mal-B1 INTRON Pde1c
3L	17797968	3L_17797968_SNP [dm3] 3L_17804868_SNP [dm6]	C	A	1.605e^-4	0.799	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_cad
2L	16161347	2L_16161347_SNP [dm3] 2L_16161347_SNP [dm6]	C	A	1.608e^-4	0.799	INTERGENIC
3R	14451885	3R_14451885_SNP [dm3] 3R_18626163_SNP [dm6]	C	T	1.611e^-4	0.799	INTRON qin
3R	25398409	3R_25398409_SNP [dm3] 3R_29572687_SNP [dm6]	C	T	1.614e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26456168	3R_26456168_SNP [dm3] 3R_30630446_SNP [dm6]	T	C	1.632e^-4	0.8	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10034876	2L_10034876_SNP [dm3] 2L_10034876_SNP [dm6]	A	C	1.644e^-4	0.8	INTRON obst-B
2R	14326192	2R_14326192_SNP [dm3] 2R_18438687_SNP [dm6]	G	A	1.646e^-4	0.8	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13788985	2R_13788985_SNP [dm3] 2R_17901480_SNP [dm6]	G	A	1.656e^-4	0.8	INTRON Elk
2L	6409968	2L_6409968_SNP [dm3] 2L_6409968_SNP [dm6]	A	G	1.659e^-4	0.8	INTRON CG42368
2R	17056600	2R_17056600_SNP [dm3] 2R_21169095_SNP [dm6]	T	C	1.660e^-4	0.8	SYNONYMOUS_CODING hng1 UPSTREAM CG4266 DOWNSTREAM LSm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	15562436	3L_15562436_SNP [dm3] 3L_15569336_SNP [dm6]	C	T	1.660e^-4	0.8	INTRON CG6498	TF binding site mE1_TFBS_cad
3L	17797843	3L_17797843_SNP [dm3] 3L_17804743_SNP [dm6]	G	T	1.662e^-4	0.8	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_eve
2L	12288005	2L_12288005_SNP [dm3] 2L_12288005_SNP [dm6]	T	G	1.672e^-4	0.8	INTRON aret
2L	6707756	2L_6707756_SNP [dm3] 2L_6707756_SNP [dm6]	T	A	1.679e^-4	0.8	INTRON Tsp
3L	18093340	3L_18093340_SNP [dm3] 3L_18100240_SNP [dm6]	C	A	1.687e^-4	0.8	INTRON CG13698
2L	9545512	2L_9545512_SNP [dm3] 2L_9545512_SNP [dm6]	C	T	1.691e^-4	0.8	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
2L	11005762	2L_11005762_SNP [dm3] 2L_11005762_SNP [dm6]	T	C	1.704e^-4	0.8	SYNONYMOUS_CODING Nup154	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13707344	2L_13707344_SNP [dm3] 2L_13707344_SNP [dm6]	G	A	1.707e^-4	0.8	UPSTREAM CG7311 INTRON CG31814
3R	8102053	3R_8102053_SNP [dm3] 3R_12276331_SNP [dm6]	C	T	1.708e^-4	0.8	INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	9203716	3L_9203716_SNP [dm3] 3L_9210616_SNP [dm6]	C	G	1.709e^-4	0.8	INTERGENIC
2R	21069429	2R_21069429_SNP [dm3] 2R_25181906_SNP [dm6]	G	T	1.714e^-4	0.8	INTERGENIC
3L	13333896	3L_13333896_SNP [dm3] 3L_13340796_SNP [dm6]	G	C	1.714e^-4	0.8	INTERGENIC
2L	18510021	2L_18510021_SNP [dm3] 2L_18510021_SNP [dm6]	T	G	1.716e^-4	0.8	INTRON CG10178
2L	14671134	2L_14671134_SNP [dm3] 2L_14671134_SNP [dm6]	G	T	1.724e^-4	0.8	INTRON osp
3L	17797984	3L_17797984_SNP [dm3] 3L_17804884_SNP [dm6]	A	T	1.724e^-4	0.8	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_cad
2L	14098801	2L_14098801_SNP [dm3] 2L_14098801_SNP [dm6]	A	T	1.727e^-4	0.8	INTERGENIC
2L	15854659	2L_15854659_SNP [dm3] 2L_15854659_SNP [dm6]	T	C	1.730e^-4	0.8	SYNONYMOUS_CODING Tektin-A DOWNSTREAM CG13243
2L	3152986	2L_3152986_SNP [dm3] 2L_3152986_SNP [dm6]	A	C	1.731e^-4	0.8	UPSTREAM Mad INTRON Mad	TF binding site BDTNP1_TFBS_dl
2L	6587716	2L_6587716_SNP [dm3] 2L_6587716_SNP [dm6]	A	G	1.737e^-4	0.8	INTRON CG11319
2L	19336139	2L_19336139_SNP [dm3] 2L_19336139_SNP [dm6]	T	C	1.747e^-4	0.8	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14001452	2L_14001452_SNP [dm3] 2L_14001452_SNP [dm6]	T	A	1.754e^-4	0.8	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	8131488	2L_8131488_SNP [dm3] 2L_8131488_SNP [dm6]	G	T	1.768e^-4	0.8	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da
2L	12313752	2L_12313752_SNP [dm3] 2L_12313752_SNP [dm6]	T	C	1.768e^-4	0.8	DOWNSTREAM aret INTERGENIC
2L	18509742	2L_18509742_MNP [dm3] 2L_18509742_MNP [dm6]	AGA	CTG	1.782e^-4	0.8	UTR_5_PRIME CG10178 INTRON CG10178
2L	21764585	2L_21764585_SNP [dm3] 2L_21764585_SNP [dm6]	G	A	1.784e^-4	0.8	INTRON CG31612
3L	10013554	3L_10013554_SNP [dm3] 3L_10020454_SNP [dm6]	G	C	1.792e^-4	0.8	INTRON dpr6
3L	14201625	3L_14201625_SNP [dm3] 3L_14208525_SNP [dm6]	G	A	1.795e^-4	0.8	INTRON nuf	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	14881947	X_14881947_SNP [dm3] X_14987914_SNP [dm6]	C	G	1.819e^-4	0.8	INTRON eag	TF binding site BDTNP1_TFBS_dl
2R	15396268	2R_15396268_SNP [dm3] 2R_19508763_SNP [dm6]	A	G	1.819e^-4	0.8	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11414909	2L_11414909_SNP [dm3] 2L_11414909_SNP [dm6]	C	T	1.820e^-4	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	11417675	2L_11417675_SNP [dm3] 2L_11417675_SNP [dm6]	T	G	1.825e^-4	0.8	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6910973	3L_6910973_SNP [dm3] 3L_6917873_SNP [dm6]	T	A	1.826e^-4	0.8	INTERGENIC
3R	7855441	3R_7855441_SNP [dm3] 3R_12029719_SNP [dm6]	A	G	1.835e^-4	0.8	SYNONYMOUS_CODING CG42504 UTR_5_PRIME CG42505 UTR_3_PRIME CG31358
2L	8069480	2L_8069480_SNP [dm3] 2L_8069480_SNP [dm6]	G	T	1.839e^-4	0.8	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15240867	2L_15240867_SNP [dm3] 2L_15240867_SNP [dm6]	A	T	1.842e^-4	0.8	INTRON ZnT35C
2L	20813397	2L_20813397_SNP [dm3] 2L_20813397_SNP [dm6]	G	A	1.843e^-4	0.8	DOWNSTREAM CG33322 INTRON CG9328
2L	18510032	2L_18510032_SNP [dm3] 2L_18510032_SNP [dm6]	C	T	1.844e^-4	0.8	INTRON CG10178
2R	7484846	2R_7484846_SNP [dm3] 2R_11597341_SNP [dm6]	T	A	1.846e^-4	0.8	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19320763	2L_19320763_SNP [dm3] 2L_19320763_SNP [dm6]	C	A	1.850e^-4	0.8	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6584763	2R_6584763_SNP [dm3] 2R_10697258_SNP [dm6]	G	A	1.855e^-4	0.8	INTRON stan
X	7141783	X_7141783_SNP [dm3] X_7247750_SNP [dm6]	A	T	1.861e^-4	0.8	INTRON CR44357	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	16161356	2L_16161356_INS [dm3] 2L_16161356_INS [dm6]	A	ATTTGGTGGCTTA...	1.866e^-4	0.8	INTERGENIC
2L	18510014	2L_18510014_SNP [dm3] 2L_18510014_SNP [dm6]	A	C	1.875e^-4	0.8	INTRON CG10178
3R	8020897	3R_8020897_SNP [dm3] 3R_12195175_SNP [dm6]	G	A	1.886e^-4	0.8	UPSTREAM CG43450 & 1 other INTERGENIC
2L	2287129	2L_2287129_SNP [dm3] 2L_2287129_SNP [dm6]	G	A	1.887e^-4	0.8	UTR_3_PRIME CG42658 UPSTREAM CG31681
2L	11416897	2L_11416897_SNP [dm3] 2L_11416897_SNP [dm6]	A	G	1.893e^-4	0.8	INTERGENIC
3L	19400666	3L_19400666_SNP [dm3] 3L_19407566_SNP [dm6]	T	A	1.895e^-4	0.8	INTRON CG32206
3L	14200719	3L_14200719_SNP [dm3] 3L_14207619_SNP [dm6]	C	T	1.897e^-4	0.8	START_GAINED nuf UTR_5_PRIME nuf INTRON nuf
3L	19687215	3L_19687215_SNP [dm3] 3L_19694115_SNP [dm6]	G	T	1.900e^-4	0.8	INTRON verm
2L	9128165	2L_9128165_SNP [dm3] 2L_9128165_SNP [dm6]	C	T	1.904e^-4	0.8	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1002422	3L_1002422_INS [dm3] 3L_1002422_INS [dm6]	A	ATACTAGGTACGA...	1.904e^-4	0.8	INTRON trio
X	5040097	X_5040097_INS [dm3] X_5146064_INS [dm6]	C	AA	1.908e^-4	0.8	INTRON rg & 1 other
3L	9564493	3L_9564493_SNP [dm3] 3L_9571393_SNP [dm6]	C	A	1.909e^-4	0.8	INTRON CG42673
2L	18538538	2L_18538538_INS [dm3] 2L_18538538_INS [dm6]	C	CTT	1.909e^-4	0.8	INTRON Pde11	TF binding site mE1_TFBS_HSA
3L	1003336	3L_1003336_SNP [dm3] 3L_1003336_SNP [dm6]	G	A	1.915e^-4	0.8	INTRON trio	TF binding site mE1_TFBS_chinmo
2L	6410101	2L_6410101_DEL [dm3] 2L_6410101_DEL [dm6]	CAACCAAGTGCTTG...	C	1.916e^-4	0.8	INTRON CG42368
2R	13380829	2R_13380829_SNP [dm3] 2R_17493324_SNP [dm6]	G	A	1.932e^-4	0.8	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	12766090	2R_12766090_SNP [dm3] 2R_16878585_SNP [dm6]	C	T	1.933e^-4	0.8	INTRON CG8910
2R	4395673	2R_4395673_SNP [dm3] 2R_8508168_SNP [dm6]	A	T	1.951e^-4	0.8	INTRON mtt
2L	9626960	2L_9626960_SNP [dm3] 2L_9626960_SNP [dm6]	C	T	1.955e^-4	0.8	INTERGENIC
3R	5640310	3R_5640310_SNP [dm3] 3R_9814588_SNP [dm6]	C	A	1.960e^-4	0.8	SYNONYMOUS_CODING eloF UPSTREAM CR44035 DOWNSTREAM CG8534
3R	8346633	3R_8346633_SNP [dm3] 3R_12520911_SNP [dm6]	G	A	1.977e^-4	0.8	INTRON Octbeta3R
2R	21069654	2R_21069654_SNP [dm3] 2R_25182131_SNP [dm6]	T	G	1.984e^-4	0.8	INTERGENIC
2R	3909170	2R_3909170_SNP [dm3] 2R_8021665_SNP [dm6]	G	A	1.984e^-4	0.8	EXON CR45267	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	19377471	3L_19377471_SNP [dm3] 3L_19384371_SNP [dm6]	C	T	1.987e^-4	0.8	INTRON CG32206
3L	9817431	3L_9817431_SNP [dm3] 3L_9824331_SNP [dm6]	A	T	1.992e^-4	0.8	UPSTREAM Ilp5 INTRON CG43897
X	13996538	X_13996538_SNP [dm3] X_14102505_SNP [dm6]	C	A	2.000e^-4	0.8	DOWNSTREAM tRNA:S4:12Ee INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3889945	2R_3889945_SNP [dm3] 2R_8002440_SNP [dm6]	T	A	2.007e^-4	0.8	UPSTREAM CG11191 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6410296	2L_6410296_SNP [dm3] 2L_6410296_SNP [dm6]	T	G	2.008e^-4	0.8	INTRON CG42368
2L	22327223	2L_22327223_SNP [dm3] 2L_22327223_SNP [dm6]	A	G	2.009e^-4	0.8	INTRON CG17018	transposable element FlyBase
2R	4699589	2R_4699589_SNP [dm3] 2R_8812084_SNP [dm6]	C	A	2.014e^-4	0.8	INTRON sns	TF binding site mE1_TFBS_cad
2L	3153109	2L_3153109_SNP [dm3] 2L_3153109_SNP [dm6]	C	T	2.015e^-4	0.8	UPSTREAM Mad INTRON Mad
2R	21078650	2R_21078650_SNP [dm3] 2R_25191127_SNP [dm6]	A	C	2.018e^-4	0.8	INTRON CG9380	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2L	10034869	2L_10034869_SNP [dm3] 2L_10034869_SNP [dm6]	T	A	2.021e^-4	0.8	INTRON obst-B
3R	17810165	3R_17810165_SNP [dm3] 3R_21984443_SNP [dm6]	G	A	2.025e^-4	0.8	INTRON Eip93F
3L	2781234	3L_2781234_SNP [dm3] 3L_2781234_SNP [dm6]	G	C	2.030e^-4	0.8	NON_SYNONYMOUS_CODING mRpS35 DOWNSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_ttk
2R	3812783	2R_3812783_SNP [dm3] 2R_7925278_SNP [dm6]	T	A	2.033e^-4	0.8	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	14280508	2L_14280508_SNP [dm3] 2L_14280508_SNP [dm6]	A	G	2.040e^-4	0.8	INTRON wb	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	8787710	2L_8787710_SNP [dm3] 2L_8787710_SNP [dm6]	G	T	2.045e^-4	0.8	INTERGENIC
3R	11507903	3R_11507903_SNP [dm3] 3R_15682181_SNP [dm6]	C	T	2.050e^-4	0.8	INTRON pxb
2L	8787709	2L_8787709_SNP [dm3] 2L_8787709_SNP [dm6]	G	T	2.056e^-4	0.8	INTERGENIC
2L	451889	2L_451889_SNP [dm3] 2L_451889_SNP [dm6]	G	A	2.057e^-4	0.8	UPSTREAM crq INTRON crq	TF binding site mE1_TFBS_inv
3L	7485253	3L_7485253_SNP [dm3] 3L_7492153_SNP [dm6]	C	T	2.063e^-4	0.8	SYNONYMOUS_CODING Cyp316a1
X	6835982	X_6835982_SNP [dm3] X_6941949_SNP [dm6]	C	T	2.065e^-4	0.8	INTRON CG14431
2L	12309708	2L_12309708_SNP [dm3] 2L_12309708_SNP [dm6]	T	C	2.065e^-4	0.8	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11308754	2R_11308754_SNP [dm3] 2R_15421249_SNP [dm6]	G	T	2.066e^-4	0.8	INTRON CG43729
2L	8131413	2L_8131413_SNP [dm3] 2L_8131413_SNP [dm6]	T	A	2.073e^-4	0.8	UTR_5_PRIME CG8668	TF binding site BDTNP1_TFBS_da
2L	19096229	2L_19096229_SNP [dm3] 2L_19096229_SNP [dm6]	A	T	2.078e^-4	0.8	INTRON Lim3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18538516	2L_18538516_DEL [dm3] 2L_18538516_DEL [dm6]	ACA	A	2.079e^-4	0.8	INTRON Pde11	TF binding site mE1_TFBS_HSA
2L	22207260	2L_22207260_SNP [dm3] 2L_22207260_SNP [dm6]	C	A	2.080e^-4	0.8	INTRON Ir40a	transposable element FlyBase
3R	8027671	3R_8027671_SNP [dm3] 3R_12201949_SNP [dm6]	T	G	2.091e^-4	0.8	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17797884	3L_17797884_SNP [dm3] 3L_17804784_SNP [dm6]	C	A	2.100e^-4	0.8	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC
2R	12766076	2R_12766076_SNP [dm3] 2R_16878571_SNP [dm6]	A	G	2.104e^-4	0.8	INTRON CG8910
3L	19377516	3L_19377516_SNP [dm3] 3L_19384416_SNP [dm6]	A	T	2.106e^-4	0.8	INTRON CG32206
3L	6091909	3L_6091909_SNP [dm3] 3L_6098809_SNP [dm6]	G	T	2.107e^-4	0.8	INTRON Ets65A
3L	17797899	3L_17797899_SNP [dm3] 3L_17804799_SNP [dm6]	A	T	2.112e^-4	0.8	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC
2R	20394264	2R_20394264_SNP [dm3] 2R_24506741_SNP [dm6]	A	G	2.117e^-4	0.8	UPSTREAM CG13581 INTERGENIC
3L	12928987	3L_12928987_SNP [dm3] 3L_12935887_SNP [dm6]	C	G	2.121e^-4	0.8	INTERGENIC
2L	9421881	2L_9421881_SNP [dm3] 2L_9421881_SNP [dm6]	G	T	2.121e^-4	0.8	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16933505	X_16933505_SNP [dm3] X_17039472_SNP [dm6]	C	T	2.121e^-4	0.8	INTRON CG45002
2L	9374567	2L_9374567_SNP [dm3] 2L_9374567_SNP [dm6]	G	A	2.122e^-4	0.8	DOWNSTREAM CR43865 INTRON Shawl
2L	11004904	2L_11004904_SNP [dm3] 2L_11004904_SNP [dm6]	C	T	2.123e^-4	0.8	UTR_5_PRIME Nup154 UPSTREAM RpL9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	15099172	2L_15099172_DEL [dm3] 2L_15099172_DEL [dm6]	ACTA	A	2.126e^-4	0.8	INTERGENIC
3L	5898396	3L_5898396_SNP [dm3] 3L_5905296_SNP [dm6]	T	A	2.132e^-4	0.8	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486
2R	16934511	2R_16934511_INS [dm3] 2R_21047006_INS [dm6]	C	CA	2.135e^-4	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19099291	2L_19099291_SNP [dm3] 2L_19099291_SNP [dm6]	T	G	2.136e^-4	0.8	INTRON Lim3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11920139	2L_11920139_SNP [dm3] 2L_11920139_SNP [dm6]	T	C	2.137e^-4	0.8	INTRON Pde1c
3L	1906465	3L_1906465_SNP [dm3] 3L_1906465_SNP [dm6]	T	A	2.141e^-4	0.8	INTRON CG1887
3L	6091900	3L_6091900_SNP [dm3] 3L_6098800_SNP [dm6]	A	G	2.154e^-4	0.8	INTRON Ets65A
3L	17797936	3L_17797936_SNP [dm3] 3L_17804836_SNP [dm6]	C	T	2.156e^-4	0.8	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_cad
2L	18555244	2L_18555244_SNP [dm3] 2L_18555244_SNP [dm6]	C	A	2.160e^-4	0.8	INTRON Pde11	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3812779	2R_3812779_SNP [dm3] 2R_7925274_SNP [dm6]	T	A	2.161e^-4	0.8	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	4633537	2L_4633537_SNP [dm3] 2L_4633537_SNP [dm6]	A	T	2.163e^-4	0.8	DOWNSTREAM CR45452 INTERGENIC
3R	12145560	3R_12145560_SNP [dm3] 3R_16319838_SNP [dm6]	A	C	2.164e^-4	0.8	INTRON Sulf1
2R	16934517	2R_16934517_SNP [dm3] 2R_21047012_SNP [dm6]	G	C	2.165e^-4	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8036031	3R_8036031_SNP [dm3] 3R_12210309_SNP [dm6]	T	C	2.165e^-4	0.8	UTR_5_PRIME CG4830
X	13253736	X_13253736_SNP [dm3] X_13359703_SNP [dm6]	A	G	2.166e^-4	0.8	INTRON Syt12
3R	19194461	3R_19194461_SNP [dm3] 3R_23368739_SNP [dm6]	C	T	2.167e^-4	0.8	INTERGENIC
X	6136486	X_6136486_SNP [dm3] X_6242453_SNP [dm6]	G	A	2.173e^-4	0.8	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	18293661	2L_18293661_SNP [dm3] 2L_18293661_SNP [dm6]	A	C	2.174e^-4	0.8	DOWNSTREAM CR43358 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
X	4448391	X_4448391_SNP [dm3] X_4554358_SNP [dm6]	A	G	2.177e^-4	0.8	UTR_5_PRIME CG11444 UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21005606	2L_21005606_SNP [dm3] 2L_21005606_SNP [dm6]	T	A	2.179e^-4	0.8	INTRON CG42238
3R	10556105	3R_10556105_SNP [dm3] 3R_14730383_SNP [dm6]	A	C	2.183e^-4	0.8	INTRON CG7530
3R	27180836	3R_27180836_SNP [dm3] 3R_31355114_SNP [dm6]	G	T	2.185e^-4	0.8	INTRON CG34347
2R	1763803	2R_1763803_SNP [dm3] 2R_5876298_SNP [dm6]	A	G	2.187e^-4	0.8	INTERGENIC
3L	6977963	3L_6977963_DEL [dm3] 3L_6984863_DEL [dm6]	ACCACACATTTGCCACGA...	A	2.189e^-4	0.8	UPSTREAM CG32388 & 1 other INTERGENIC
3L	10893212	3L_10893212_SNP [dm3] 3L_10900112_SNP [dm6]	G	A	2.190e^-4	0.8	UPSTREAM Aps INTERGENIC	TF binding site mE1_TFBS_sens
X	12421890	X_12421890_SNP [dm3] X_12527857_SNP [dm6]	G	T	2.194e^-4	0.8	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
X	5040075	X_5040075_SNP [dm3] X_5146042_SNP [dm6]	T	C	2.203e^-4	0.8	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
2L	2605671	2L_2605671_SNP [dm3] 2L_2605671_SNP [dm6]	T	C	2.210e^-4	0.8	INTERGENIC
2L	15898950	2L_15898950_SNP [dm3] 2L_15898950_SNP [dm6]	A	G	2.214e^-4	0.8	SYNONYMOUS_CODING CG31823	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10174800	2L_10174800_SNP [dm3] 2L_10174800_SNP [dm6]	A	T	2.222e^-4	0.8	DOWNSTREAM CG13137 INTRON CG44153
2L	10174801	2L_10174801_SNP [dm3] 2L_10174801_SNP [dm6]	C	T	2.222e^-4	0.8	DOWNSTREAM CG13137 INTRON CG44153
2R	6584766	2R_6584766_SNP [dm3] 2R_10697261_SNP [dm6]	C	G	2.229e^-4	0.8	INTRON stan
2L	17989537	2L_17989537_INS [dm3] 2L_17989537_INS [dm6]	C	CT	2.230e^-4	0.8	UPSTREAM Prosbeta5R2 DOWNSTREAM CG5681 INTERGENIC	TF binding site mE1_TFBS_cad
2L	8225078	2L_8225078_SNP [dm3] 2L_8225078_SNP [dm6]	T	C	2.230e^-4	0.8	INTRON Pvr
2L	20572920	2L_20572920_SNP [dm3] 2L_20572920_SNP [dm6]	A	G	2.230e^-4	0.8	INTRON CR45347
2L	2287185	2L_2287185_SNP [dm3] 2L_2287185_SNP [dm6]	A	G	2.232e^-4	0.8	UTR_3_PRIME CG42658 UPSTREAM CG31681
X	2819351	X_2819351_SNP [dm3] X_2925318_SNP [dm6]	C	G	2.238e^-4	0.801	DOWNSTREAM CG3588 & 1 other INTRON kirre
3L	11037557	3L_11037557_SNP [dm3] 3L_11044457_SNP [dm6]	C	G	2.255e^-4	0.805	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2L	3698775	2L_3698775_SNP [dm3] 2L_3698775_SNP [dm6]	G	T	2.259e^-4	0.805	UPSTREAM CG3604 & 1 other INTRON CG10031
3R	14332999	3R_14332999_SNP [dm3] 3R_18507277_SNP [dm6]	C	T	2.265e^-4	0.805	UPSTREAM fru INTRON fru	TF binding site mE1_TFBS_HSA
3L	8418394	3L_8418394_SNP [dm3] 3L_8425294_SNP [dm6]	C	T	2.266e^-4	0.805	UTR_5_PRIME Cbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14905159	3R_14905159_SNP [dm3] 3R_19079437_SNP [dm6]	G	T	2.287e^-4	0.81	INTRON cdi
3R	11507907	3R_11507907_SNP [dm3] 3R_15682185_SNP [dm6]	C	A	2.294e^-4	0.81	INTRON pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9538087	2L_9538087_SNP [dm3] 2L_9538087_SNP [dm6]	T	C	2.296e^-4	0.81	SYNONYMOUS_CODING Oatp30B
2L	12315054	2L_12315054_SNP [dm3] 2L_12315054_SNP [dm6]	C	T	2.306e^-4	0.81	DOWNSTREAM CR45282 INTERGENIC
2R	10632398	2R_10632398_SNP [dm3] 2R_14744893_SNP [dm6]	C	T	2.312e^-4	0.81	INTRON CG12858
X	7377924	X_7377924_DEL [dm3] X_7483891_DEL [dm6]	AG	A	2.314e^-4	0.81	INTERGENIC
2R	19632979	2R_19632979_DEL [dm3] 2R_23745456_DEL [dm6]	CCGTAAGATCGCCAGACGAT...	T	2.323e^-4	0.81	UPSTREAM egl INTRON egl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
2L	14481277	2L_14481277_SNP [dm3] 2L_14481277_SNP [dm6]	C	T	2.339e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	11005672	2L_11005672_SNP [dm3] 2L_11005672_SNP [dm6]	C	G	2.340e^-4	0.81	SYNONYMOUS_CODING Nup154	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10948139	3R_10948139_SNP [dm3] 3R_15122417_SNP [dm6]	C	T	2.345e^-4	0.81	INTRON CG42788
3L	6091920	3L_6091920_SNP [dm3] 3L_6098820_SNP [dm6]	G	A	2.345e^-4	0.81	INTRON Ets65A
3R	2793494	3R_2793494_SNP [dm3] 3R_6967772_SNP [dm6]	C	A	2.346e^-4	0.81	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	19545957	X_19545957_SNP [dm3] X_19651924_SNP [dm6]	C	T	2.350e^-4	0.81	UTR_5_PRIME Ranbp21 UPSTREAM CG14215 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10565804	2L_10565804_SNP [dm3] 2L_10565804_SNP [dm6]	A	G	2.351e^-4	0.81	INTRON Trim9
2L	6581004	2L_6581004_SNP [dm3] 2L_6581004_SNP [dm6]	A	C	2.355e^-4	0.81	INTRON CG11319
2L	6410494	2L_6410494_SNP [dm3] 2L_6410494_SNP [dm6]	A	T	2.362e^-4	0.81	INTRON CG42368
2L	7164352	2L_7164352_SNP [dm3] 2L_7164352_SNP [dm6]	C	T	2.372e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	18378365	X_18378365_SNP [dm3] X_18484332_SNP [dm6]	C	A	2.372e^-4	0.81	UPSTREAM Hayan DOWNSTREAM psh INTERGENIC
3L	17797979	3L_17797979_SNP [dm3] 3L_17804879_SNP [dm6]	C	A	2.372e^-4	0.81	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_cad
X	8365384	X_8365384_SNP [dm3] X_8471351_SNP [dm6]	T	A	2.372e^-4	0.81	INTRON CG33223 & 1 other
3L	10013850	3L_10013850_SNP [dm3] 3L_10020750_SNP [dm6]	A	T	2.374e^-4	0.81	INTRON dpr6
2R	9146064	2R_9146064_SNP [dm3] 2R_13258559_SNP [dm6]	A	T	2.378e^-4	0.81	DOWNSTREAM CG10799 INTERGENIC
3R	6762066	3R_6762066_SNP [dm3] 3R_10936344_SNP [dm6]	A	G	2.380e^-4	0.81	INTERGENIC
2L	11417684	2L_11417684_SNP [dm3] 2L_11417684_SNP [dm6]	C	T	2.399e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13941595	2L_13941595_SNP [dm3] 2L_13941595_SNP [dm6]	T	C	2.422e^-4	0.814	INTRON Ance-3
2R	14326001	2R_14326001_SNP [dm3] 2R_18438496_SNP [dm6]	G	T	2.424e^-4	0.814	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18400308	3L_18400308_SNP [dm3] 3L_18407208_SNP [dm6]	G	A	2.424e^-4	0.814	INTERGENIC	regulatory region REDfly_CRMs
2L	8268705	2L_8268705_SNP [dm3] 2L_8268705_SNP [dm6]	C	T	2.424e^-4	0.814	INTRON Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2605791	2L_2605791_SNP [dm3] 2L_2605791_SNP [dm6]	T	C	2.425e^-4	0.814	INTERGENIC
X	16508302	X_16508302_SNP [dm3] X_16614269_SNP [dm6]	C	T	2.428e^-4	0.814	UTR_3_PRIME mbt DOWNSTREAM CG9782
2R	16294534	2R_16294534_SNP [dm3] 2R_20407029_SNP [dm6]	A	C	2.440e^-4	0.814	INTERGENIC
3L	18837004	3L_18837004_SNP [dm3] 3L_18843904_SNP [dm6]	G	C	2.443e^-4	0.814	INTRON Indy
2R	4967546	2R_4967546_INS [dm3] 2R_9080041_INS [dm6]	A	AC	2.444e^-4	0.814	INTRON CG8083
2R	21086914	2R_21086914_SNP [dm3] 2R_25199391_SNP [dm6]	C	T	2.450e^-4	0.814	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8268706	2L_8268706_SNP [dm3] 2L_8268706_SNP [dm6]	C	T	2.452e^-4	0.814	INTRON Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14189540	3L_14189540_SNP [dm3] 3L_14196440_SNP [dm6]	T	C	2.454e^-4	0.814	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1332505	3L_1332505_SNP [dm3] 3L_1332505_SNP [dm6]	T	C	2.456e^-4	0.814	SYNONYMOUS_CODING msd5 DOWNSTREAM mtacp1 & 2 others
2R	20148580	2R_20148580_SNP [dm3] 2R_24261057_SNP [dm6]	G	A	2.458e^-4	0.814	UPSTREAM CG3376 INTRON CG3376	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22207261	2L_22207261_SNP [dm3] 2L_22207261_SNP [dm6]	A	C	2.472e^-4	0.814	INTRON Ir40a	transposable element FlyBase
2R	11627570	2R_11627570_SNP [dm3] 2R_15740065_SNP [dm6]	A	G	2.491e^-4	0.814	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13374887	3R_13374887_SNP [dm3] 3R_17549165_SNP [dm6]	T	C	2.495e^-4	0.814	INTERGENIC
X	19224447	X_19224447_SNP [dm3] X_19330414_SNP [dm6]	A	G	2.498e^-4	0.814	INTRON nAChRalpha7
2L	14687773	2L_14687773_SNP [dm3] 2L_14687773_SNP [dm6]	A	G	2.507e^-4	0.814	INTRON osp
3L	7218080	3L_7218080_SNP [dm3] 3L_7224980_SNP [dm6]	C	A	2.512e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_Trl
X	12422061	X_12422061_SNP [dm3] X_12528028_SNP [dm6]	A	G	2.515e^-4	0.814	INTRON CG43921
2L	12551200	2L_12551200_SNP [dm3] 2L_12551200_SNP [dm6]	A	T	2.516e^-4	0.814	INTERGENIC
2L	17989534	2L_17989534_INS [dm3] 2L_17989534_INS [dm6]	A	AATAAAGAA	2.518e^-4	0.814	UPSTREAM Prosbeta5R2 DOWNSTREAM CG5681 INTERGENIC	TF binding site mE1_TFBS_cad
3L	18831598	3L_18831598_SNP [dm3] 3L_18838498_SNP [dm6]	A	T	2.523e^-4	0.814	INTRON Indy	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14644851	3L_14644851_SNP [dm3] 3L_14651751_SNP [dm6]	T	A	2.528e^-4	0.814	INTRON dlp	TF binding site mE1_TFBS_cnc
2L	12308165	2L_12308165_SNP [dm3] 2L_12308165_SNP [dm6]	T	C	2.531e^-4	0.814	INTRON aret
2L	11377608	2L_11377608_SNP [dm3] 2L_11377608_SNP [dm6]	C	T	2.540e^-4	0.814	INTERGENIC	regulatory region REDfly_CRMs
3R	23476429	3R_23476429_SNP [dm3] 3R_27650707_SNP [dm6]	C	T	2.542e^-4	0.814	UTR_5_PRIME tau DOWNSTREAM tau INTRON tau
2R	19350385	2R_19350385_SNP [dm3] 2R_23462862_SNP [dm6]	G	T	2.543e^-4	0.814	INTRON CG43795	TF binding site mE1_TFBS_inv
2L	5837955	2L_5837955_SNP [dm3] 2L_5837955_SNP [dm6]	A	T	2.545e^-4	0.814	INTRON TrissinR
X	19545968	X_19545968_SNP [dm3] X_19651935_SNP [dm6]	T	C	2.545e^-4	0.814	UTR_5_PRIME Ranbp21 UPSTREAM CG14215 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	17533382	X_17533382_SNP [dm3] X_17639349_SNP [dm6]	G	A	2.547e^-4	0.814	UTR_3_PRIME RhoGAPp190 DOWNSTREAM CG5800
2L	16096786	2L_16096786_DEL [dm3] 2L_16096786_DEL [dm6]	TT	T	2.548e^-4	0.814	DOWNSTREAM CG4891 INTERGENIC
3L	8034940	3L_8034940_SNP [dm3] 3L_8041840_SNP [dm6]	A	G	2.551e^-4	0.814	INTRON nmo
2R	8330124	2R_8330124_SNP [dm3] 2R_12442619_SNP [dm6]	G	C	2.551e^-4	0.814	INTRON Dyb
X	18173928	X_18173928_SNP [dm3] X_18279895_SNP [dm6]	G	T	2.554e^-4	0.814	INTRON upd3	TF binding site mE1_TFBS_chinmo
3R	13599124	3R_13599124_SNP [dm3] 3R_17773402_SNP [dm6]	T	C	2.565e^-4	0.814	INTRON CG43102
2L	15553824	2L_15553824_SNP [dm3] 2L_15553824_SNP [dm6]	C	T	2.573e^-4	0.814	INTRON kek3
2R	2740724	2R_2740724_SNP [dm3] 2R_6853219_SNP [dm6]	G	A	2.573e^-4	0.814	INTERGENIC
2R	18245422	2R_18245422_SNP [dm3] 2R_22357917_SNP [dm6]	A	G	2.576e^-4	0.814	INTRON Liprin-gamma	transposable element FlyBase
X	8365391	X_8365391_SNP [dm3] X_8471358_SNP [dm6]	T	C	2.580e^-4	0.814	INTRON CG33223 & 1 other
2L	22159874	2L_22159874_SNP [dm3] 2L_22159874_SNP [dm6]	G	T	2.581e^-4	0.814	UTR_3_PRIME CG42748 DOWNSTREAM CG42748 INTRON CG42748
2R	12654146	2R_12654146_SNP [dm3] 2R_16766641_SNP [dm6]	A	G	2.582e^-4	0.814	UPSTREAM CG5348 & 2 others INTRON unc-104
2L	9951489	2L_9951489_DEL [dm3] 2L_9951489_DEL [dm6]	ATAT	A	2.602e^-4	0.814	UPSTREAM mir-87 DOWNSTREAM CG13126 INTERGENIC
2L	1282510	2L_1282510_SNP [dm3] 2L_1282510_SNP [dm6]	C	G	2.606e^-4	0.814	INTRON robo3
3L	17797937	3L_17797937_SNP [dm3] 3L_17804837_SNP [dm6]	T	G	2.612e^-4	0.814	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_cad
2L	18274838	2L_18274838_SNP [dm3] 2L_18274838_SNP [dm6]	A	C	2.613e^-4	0.814	INTRON CG42750
X	8365095	X_8365095_SNP [dm3] X_8471062_SNP [dm6]	A	T	2.620e^-4	0.814	INTRON CG33223 & 1 other
3L	12394494	3L_12394494_SNP [dm3] 3L_12401394_SNP [dm6]	A	G	2.626e^-4	0.814	SYNONYMOUS_CODING Smyd4 DOWNSTREAM CG32103	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11372264	2L_11372264_SNP [dm3] 2L_11372264_SNP [dm6]	A	T	2.628e^-4	0.814	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9887362	2L_9887362_SNP [dm3] 2L_9887362_SNP [dm6]	C	T	2.632e^-4	0.814	UPSTREAM FKBP59 EXON CR44701	TF binding site mE1_TFBS_bab1
X	13253543	X_13253543_SNP [dm3] X_13359510_SNP [dm6]	A	G	2.638e^-4	0.814	INTRON Syt12
2R	3806639	2R_3806639_SNP [dm3] 2R_7919134_SNP [dm6]	C	T	2.646e^-4	0.814	SYNONYMOUS_CODING Cul1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	10797966	X_10797966_INS [dm3] X_10903933_INS [dm6]	C	CATAC	2.648e^-4	0.814	INTERGENIC
3R	9133048	3R_9133048_INS [dm3] 3R_13307326_INS [dm6]	C	CC	2.654e^-4	0.814	INTRON CG32473
2L	8824407	2L_8824407_SNP [dm3] 2L_8824407_SNP [dm6]	C	A	2.656e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15397006	2L_15397006_SNP [dm3] 2L_15397006_SNP [dm6]	G	A	2.658e^-4	0.814	DOWNSTREAM CR44859 INTERGENIC
2R	9883893	2R_9883893_SNP [dm3] 2R_13996388_SNP [dm6]	A	C	2.662e^-4	0.814	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19054148	2R_19054148_DEL [dm3] 2R_23166625_DEL [dm6]	TTAT	T	2.665e^-4	0.814	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8228123	2L_8228123_SNP [dm3] 2L_8228123_SNP [dm6]	C	T	2.666e^-4	0.814	SYNONYMOUS_CODING Pvr INTRON Pvr
2L	11418574	2L_11418574_SNP [dm3] 2L_11418574_SNP [dm6]	T	C	2.669e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9897963	2R_9897963_SNP [dm3] 2R_14010458_SNP [dm6]	T	C	2.672e^-4	0.814	UTR_5_PRIME mam	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9956637	2R_9956637_SNP [dm3] 2R_14069132_SNP [dm6]	A	G	2.678e^-4	0.814	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15257388	3L_15257388_SNP [dm3] 3L_15264288_SNP [dm6]	A	C	2.686e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	19206708	X_19206708_SNP [dm3] X_19312675_SNP [dm6]	C	A	2.686e^-4	0.814	NON_SYNONYMOUS_CODING out	TF binding site mE1_TFBS_cad
2L	11411471	2L_11411471_SNP [dm3] 2L_11411471_SNP [dm6]	C	T	2.687e^-4	0.814	INTERGENIC	regulatory region REDfly_CRMs
2L	11411472	2L_11411472_SNP [dm3] 2L_11411472_SNP [dm6]	T	C	2.687e^-4	0.814	INTERGENIC	regulatory region REDfly_CRMs
3R	2772321	3R_2772321_SNP [dm3] 3R_6946599_SNP [dm6]	G	T	2.691e^-4	0.814	INTRON Antp	TF binding site mE1_TFBS_cad
2R	11641437	2R_11641437_SNP [dm3] 2R_15753932_SNP [dm6]	A	T	2.694e^-4	0.814	INTRON CG30089	TF binding site BDTNP1_TFBS_twi
2R	19927589	2R_19927589_SNP [dm3] 2R_24040066_SNP [dm6]	T	C	2.702e^-4	0.814	SYNONYMOUS_CODING IntS1
3L	1002551	3L_1002551_SNP [dm3] 3L_1002551_SNP [dm6]	C	T	2.707e^-4	0.814	INTRON trio
3L	17051681	3L_17051681_SNP [dm3] 3L_17058581_SNP [dm6]	G	T	2.708e^-4	0.814	DOWNSTREAM Rbp6 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	12383402	3L_12383402_SNP [dm3] 3L_12390302_SNP [dm6]	G	A	2.720e^-4	0.815	INTRON Ncc69
2R	20306439	2R_20306439_SNP [dm3] 2R_24418916_SNP [dm6]	T	A	2.723e^-4	0.815	INTRON prom	TF binding site mE1_TFBS_chinmo
2L	19095916	2L_19095916_SNP [dm3] 2L_19095916_SNP [dm6]	C	A	2.729e^-4	0.815	INTRON Lim3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14355581	2L_14355581_SNP [dm3] 2L_14355581_SNP [dm6]	G	A	2.732e^-4	0.815	UPSTREAM l_2_34Fd INTRON Rab14 EXON CR44851	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18090925	3L_18090925_SNP [dm3] 3L_18097825_SNP [dm6]	A	T	2.737e^-4	0.815	INTRON CG13698
X	16933517	X_16933517_SNP [dm3] X_17039484_SNP [dm6]	C	T	2.738e^-4	0.815	INTRON CG45002
2L	10579758	2L_10579758_SNP [dm3] 2L_10579758_SNP [dm6]	G	A	2.750e^-4	0.817	UTR_5_PRIME CG34160 INTRON Trim9
X	5094143	X_5094143_SNP [dm3] X_5200110_SNP [dm6]	A	T	2.755e^-4	0.817	INTRON rg & 1 other
2L	12260833	2L_12260833_SNP [dm3] 2L_12260833_SNP [dm6]	T	G	2.760e^-4	0.817	INTRON aret
3R	20533666	3R_20533666_SNP [dm3] 3R_24707944_SNP [dm6]	C	A	2.761e^-4	0.817	UTR_3_PRIME slo
3R	2794839	3R_2794839_SNP [dm3] 3R_6969117_SNP [dm6]	C	T	2.770e^-4	0.817	INTRON Antp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5702517	2R_5702517_SNP [dm3] 2R_9815012_SNP [dm6]	G	T	2.772e^-4	0.817	UPSTREAM lectin-46Cb INTRON CG1648
2L	13987310	2L_13987310_SNP [dm3] 2L_13987310_SNP [dm6]	T	C	2.778e^-4	0.817	INTRON rk	TF binding site mE1_TFBS_HSA
3L	5060918	3L_5060918_SNP [dm3] 3L_5060918_SNP [dm6]	A	G	2.787e^-4	0.817	INTRON Con
3R	2786846	3R_2786846_INS [dm3] 3R_6961124_INS [dm6]	C	CC	2.788e^-4	0.817	INTRON Antp
2L	6205832	2L_6205832_SNP [dm3] 2L_6205832_SNP [dm6]	G	C	2.791e^-4	0.817	INTRON CG34380
X	8365083	X_8365083_SNP [dm3] X_8471050_SNP [dm6]	A	G	2.794e^-4	0.817	INTRON CG33223 & 1 other
3L	17355592	3L_17355592_SNP [dm3] 3L_17362492_SNP [dm6]	A	G	2.798e^-4	0.817	DOWNSTREAM tap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
2R	18435713	2R_18435713_SNP [dm3] 2R_22548208_SNP [dm6]	G	A	2.814e^-4	0.817	INTRON px
3L	1593414	3L_1593414_SNP [dm3] 3L_1593414_SNP [dm6]	A	T	2.821e^-4	0.817	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4521176	2L_4521176_SNP [dm3] 2L_4521176_SNP [dm6]	A	G	2.829e^-4	0.817	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6588055	2L_6588055_INS [dm3] 2L_6588055_INS [dm6]	T	TCGCAAT	2.832e^-4	0.817	INTRON CG11319
2L	13209032	2L_13209032_SNP [dm3] 2L_13209032_SNP [dm6]	G	A	2.833e^-4	0.817	INTRON Pect
3R	7064182	3R_7064182_SNP [dm3] 3R_11238460_SNP [dm6]	C	G	2.840e^-4	0.817	SYNONYMOUS_CODING CG31388 DOWNSTREAM CG31441	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	589655	X_589655_SNP [dm3] X_695622_SNP [dm6]	C	A	2.845e^-4	0.817	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14470817	3R_14470817_SNP [dm3] 3R_18645095_SNP [dm6]	C	A	2.854e^-4	0.817	SYNONYMOUS_CODING qin
2L	22956962	2L_22956962_DEL [dm3] 2L_23064230_DEL [dm6]	TTT	T	2.867e^-4	0.817	INTERGENIC
3R	26140404	3R_26140404_SNP [dm3] 3R_30314682_SNP [dm6]	T	A	2.886e^-4	0.817	INTRON hdc
3L	3292557	3L_3292557_DEL [dm3] 3L_3292557_DEL [dm6]	GG	G	2.886e^-4	0.817	INTRON CG12009
2R	5707583	2R_5707583_SNP [dm3] 2R_9820078_SNP [dm6]	A	G	2.888e^-4	0.817	UPSTREAM CG34033 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	9989066	3L_9989066_SNP [dm3] 3L_9995966_SNP [dm6]	A	T	2.890e^-4	0.817	INTRON dpr6
2L	6909842	2L_6909842_SNP [dm3] 2L_6909842_SNP [dm6]	A	G	2.893e^-4	0.817	SYNONYMOUS_CODING Rat1	TF binding site mE1_TFBS_sens
2L	13822626	2L_13822626_SNP [dm3] 2L_13822626_SNP [dm6]	A	G	2.895e^-4	0.817	INTRON b	TF binding site mE1_TFBS_cad
2L	13822642	2L_13822642_INS [dm3] 2L_13822642_INS [dm6]	A	AG	2.895e^-4	0.817	INTRON b	TF binding site mE1_TFBS_cad
2L	11005114	2L_11005114_DEL [dm3] 2L_11005114_DEL [dm6]	TCCT	T	2.896e^-4	0.817	UPSTREAM RpL9 INTRON Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14001824	2L_14001824_SNP [dm3] 2L_14001824_SNP [dm6]	G	T	2.898e^-4	0.817	UPSTREAM rk INTERGENIC
2L	14001838	2L_14001838_SNP [dm3] 2L_14001838_SNP [dm6]	T	G	2.898e^-4	0.817	UPSTREAM rk INTERGENIC
2L	7696708	2L_7696708_SNP [dm3] 2L_7696708_SNP [dm6]	A	C	2.900e^-4	0.817	NON_SYNONYMOUS_CODING Tep2 INTRON Tep2
3R	27180663	3R_27180663_SNP [dm3] 3R_31354941_SNP [dm6]	C	T	2.904e^-4	0.817	INTRON CG34347
2R	20302889	2R_20302889_SNP [dm3] 2R_24415366_SNP [dm6]	T	C	2.905e^-4	0.817	DOWNSTREAM prom & 2 others INTERGENIC
2L	7235478	2L_7235478_SNP [dm3] 2L_7235478_SNP [dm6]	A	G	2.908e^-4	0.817	INTRON Ndae1
X	19526482	X_19526482_SNP [dm3] X_19632449_SNP [dm6]	T	G	2.923e^-4	0.817	INTRON e_y_3	TF binding site BDTNP1_TFBS_dl
2R	14439953	2R_14439953_SNP [dm3] 2R_18552448_SNP [dm6]	A	G	2.925e^-4	0.817	INTERGENIC
2L	13822668	2L_13822668_SNP [dm3] 2L_13822668_SNP [dm6]	T	C	2.935e^-4	0.817	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5464544	2L_5464544_INS [dm3] 2L_5464544_INS [dm6]	T	TTTTATTTTCAAT...	2.965e^-4	0.817	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA
2L	1024220	2L_1024220_SNP [dm3] 2L_1024220_SNP [dm6]	C	T	2.968e^-4	0.817	INTRON IA-2
2L	1024228	2L_1024228_SNP [dm3] 2L_1024228_SNP [dm6]	T	C	2.968e^-4	0.817	INTRON IA-2
3R	9621030	3R_9621030_SNP [dm3] 3R_13795308_SNP [dm6]	A	G	2.970e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	7149858	3L_7149858_SNP [dm3] 3L_7156758_SNP [dm6]	G	A	2.976e^-4	0.817	UTR_5_PRIME corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17810164	3R_17810164_SNP [dm3] 3R_21984442_SNP [dm6]	T	A	2.977e^-4	0.817	INTRON Eip93F
3R	13882630	3R_13882630_SNP [dm3] 3R_18056908_SNP [dm6]	G	A	2.980e^-4	0.817	INTERGENIC
3R	21852411	3R_21852411_SNP [dm3] 3R_26026689_SNP [dm6]	G	T	2.993e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	11423683	2L_11423683_SNP [dm3] 2L_11423683_SNP [dm6]	A	G	3.005e^-4	0.817	INTERGENIC
3R	8008361	3R_8008361_SNP [dm3] 3R_12182639_SNP [dm6]	A	C	3.012e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12283526	3L_12283526_SNP [dm3] 3L_12290426_SNP [dm6]	G	A	3.014e^-4	0.817	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	13983235	2L_13983235_SNP [dm3] 2L_13983235_SNP [dm6]	T	C	3.015e^-4	0.817	UTR_3_PRIME NimC2 & 1 other DOWNSTREAM NimC2
2L	11410299	2L_11410299_SNP [dm3] 2L_11410299_SNP [dm6]	A	C	3.015e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs
2L	19381338	2L_19381338_SNP [dm3] 2L_19381338_SNP [dm6]	C	T	3.019e^-4	0.817	INTRON CG17350
2L	18330779	2L_18330779_SNP [dm3] 2L_18330779_SNP [dm6]	T	A	3.022e^-4	0.817	INTRON Fas3	TF binding site mE1_TFBS_inv
2R	15396205	2R_15396205_SNP [dm3] 2R_19508700_SNP [dm6]	T	C	3.027e^-4	0.817	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13631719	2L_13631719_SNP [dm3] 2L_13631719_SNP [dm6]	G	C	3.028e^-4	0.817	DOWNSTREAM CR43410 INTRON kuz
3R	25649406	3R_25649406_SNP [dm3] 3R_29823684_SNP [dm6]	C	G	3.028e^-4	0.817	INTRON neo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7969941	2L_7969941_SNP [dm3] 2L_7969941_SNP [dm6]	A	G	3.036e^-4	0.817	INTRON Snoo
2L	13822658	2L_13822658_SNP [dm3] 2L_13822658_SNP [dm6]	G	A	3.037e^-4	0.817	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7790367	3R_7790367_SNP [dm3] 3R_11964645_SNP [dm6]	A	G	3.044e^-4	0.817	NON_SYNONYMOUS_CODING aur DOWNSTREAM CG12213	TF binding site mE1_TFBS_chinmo
2L	5101582	2L_5101582_SNP [dm3] 2L_5101582_SNP [dm6]	A	G	3.045e^-4	0.817	INTRON Msp300
X	5716933	X_5716933_SNP [dm3] X_5822900_SNP [dm6]	G	A	3.045e^-4	0.817	INTRON CG15765
2R	3563066	2R_3563066_SNP [dm3] 2R_7675561_SNP [dm6]	C	T	3.046e^-4	0.817	SYNONYMOUS_CODING U2A DOWNSTREAM CG12107 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11004915	2L_11004915_SNP [dm3] 2L_11004915_SNP [dm6]	G	C	3.048e^-4	0.817	UTR_5_PRIME Nup154 UPSTREAM RpL9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	17583854	2R_17583854_SNP [dm3] 2R_21696349_SNP [dm6]	C	T	3.063e^-4	0.817	UPSTREAM CngB INTRON CngB	TF binding site mE1_TFBS_cad
X	14681623	X_14681623_SNP [dm3] X_14787590_SNP [dm6]	A	G	3.066e^-4	0.817	UTR_3_PRIME rut EXON CR45522
2R	19244050	2R_19244050_SNP [dm3] 2R_23356527_SNP [dm6]	A	G	3.068e^-4	0.817	SYNONYMOUS_CODING CG3500 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	8519751	3L_8519751_SNP [dm3] 3L_8526651_SNP [dm6]	G	T	3.078e^-4	0.817	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13872527	3R_13872527_SNP [dm3] 3R_18046805_SNP [dm6]	G	A	3.081e^-4	0.817	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2267829	2L_2267829_SNP [dm3] 2L_2267829_SNP [dm6]	T	C	3.088e^-4	0.817	DOWNSTREAM CG17242 INTERGENIC
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	3.090e^-4	0.817	SYNONYMOUS_CODING msps
2L	13822639	2L_13822639_SNP [dm3] 2L_13822639_SNP [dm6]	C	A	3.091e^-4	0.817	INTRON b	TF binding site mE1_TFBS_cad
2R	18245411	2R_18245411_SNP [dm3] 2R_22357906_SNP [dm6]	C	A	3.099e^-4	0.817	INTRON Liprin-gamma	transposable element FlyBase
3R	15767315	3R_15767315_DEL [dm3] 3R_19941593_DEL [dm6]	AAG	A	3.099e^-4	0.817	INTRON Hs6st
2L	21358920	2L_21358920_SNP [dm3] 2L_21358920_SNP [dm6]	C	A	3.115e^-4	0.817	DOWNSTREAM Tsp39D INTERGENIC	transposable element FlyBase
X	3446008	X_3446008_SNP [dm3] X_3551975_SNP [dm6]	C	T	3.116e^-4	0.817	INTRON CG32791
2L	15226131	2L_15226131_SNP [dm3] 2L_15226131_SNP [dm6]	T	C	3.120e^-4	0.817	INTERGENIC
X	13502965	X_13502965_SNP [dm3] X_13608932_SNP [dm6]	T	G	3.124e^-4	0.817	UTR_3_PRIME CG11178 DOWNSTREAM Ndc80
3R	5089307	3R_5089307_SNP [dm3] 3R_9263585_SNP [dm6]	G	A	3.128e^-4	0.817	NON_SYNONYMOUS_CODING sage DOWNSTREAM VhaM8.9	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	12477065	2L_12477065_SNP [dm3] 2L_12477065_SNP [dm6]	T	C	3.130e^-4	0.817	INTRON bun
3R	8009114	3R_8009114_SNP [dm3] 3R_12183392_SNP [dm6]	T	A	3.130e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15519385	2L_15519385_SNP [dm3] 2L_15519385_SNP [dm6]	A	G	3.134e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_inv
3R	2797739	3R_2797739_SNP [dm3] 3R_6972017_SNP [dm6]	G	A	3.141e^-4	0.817	INTRON Antp
3L	7176675	3L_7176675_DEL [dm3] 3L_7183575_DEL [dm6]	ATA	A	3.153e^-4	0.817	INTRON Dscam2
3L	19387378	3L_19387378_SNP [dm3] 3L_19394278_SNP [dm6]	C	A	3.155e^-4	0.817	INTRON CG32206
2L	12312253	2L_12312253_SNP [dm3] 2L_12312253_SNP [dm6]	A	T	3.162e^-4	0.817	UTR_3_PRIME aret INTRON aret
2R	15396121	2R_15396121_SNP [dm3] 2R_19508616_SNP [dm6]	A	G	3.164e^-4	0.817	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2775099	3R_2775099_DEL [dm3] 3R_6949377_DEL [dm6]	CT	C	3.166e^-4	0.817	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	12966343	3R_12966343_SNP [dm3] 3R_17140621_SNP [dm6]	C	T	3.173e^-4	0.817	SYNONYMOUS_CODING CG5265 DOWNSTREAM TwdlW
2L	12410264	2L_12410264_SNP [dm3] 2L_12410264_SNP [dm6]	A	G	3.177e^-4	0.817	INTRON vir-1
2L	11917403	2L_11917403_SNP [dm3] 2L_11917403_SNP [dm6]	C	T	3.178e^-4	0.817	INTRON Pde1c
3L	17797981	3L_17797981_INS [dm3] 3L_17804881_INS [dm6]	A	GTGTATCC	3.180e^-4	0.817	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_cad
X	19669113	X_19669113_SNP [dm3] X_19775080_SNP [dm6]	G	A	3.190e^-4	0.817	DOWNSTREAM vfl INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	11176662	2L_11176662_SNP [dm3] 2L_11176662_SNP [dm6]	C	T	3.191e^-4	0.817	INTRON Ca-beta
3L	2646887	3L_2646887_SNP [dm3] 3L_2646887_SNP [dm6]	A	T	3.196e^-4	0.817	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
2L	13049334	2L_13049334_SNP [dm3] 2L_13049334_SNP [dm6]	G	A	3.197e^-4	0.817	INTRON CG9932
X	16755756	X_16755756_SNP [dm3] X_16861723_SNP [dm6]	G	C	3.198e^-4	0.817	INTRON CG13003
2L	13565872	2L_13565872_INS [dm3] 2L_13565872_INS [dm6]	T	TT	3.205e^-4	0.817	INTRON kuz
2R	9053811	2R_9053811_SNP [dm3] 2R_13166306_SNP [dm6]	T	A	3.208e^-4	0.817	INTRON GLaz
2L	9967584	2L_9967584_SNP [dm3] 2L_9967584_SNP [dm6]	G	A	3.220e^-4	0.817	UTR_5_PRIME RpL13 UPSTREAM Dref INTRON RpL13	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17784579	2R_17784579_SNP [dm3] 2R_21897074_SNP [dm6]	G	C	3.223e^-4	0.817	INTRON Fili
3L	11048195	3L_11048195_SNP [dm3] 3L_11055095_SNP [dm6]	G	A	3.223e^-4	0.817	UPSTREAM CG7888 INTRON CG7888
3R	26012553	3R_26012553_SNP [dm3] 3R_30186831_SNP [dm6]	G	A	3.223e^-4	0.817	INTRON CG9747
2L	20378072	2L_20378072_SNP [dm3] 2L_20378072_SNP [dm6]	C	T	3.227e^-4	0.817	NON_SYNONYMOUS_CODING CG16798	TF binding site mE1_TFBS_cad
3R	2781466	3R_2781466_SNP [dm3] 3R_6955744_SNP [dm6]	A	G	3.230e^-4	0.817	INTRON Antp
X	18173655	X_18173655_SNP [dm3] X_18279622_SNP [dm6]	C	T	3.243e^-4	0.817	SYNONYMOUS_CODING upd3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13983080	2L_13983080_SNP [dm3] 2L_13983080_SNP [dm6]	C	T	3.245e^-4	0.817	UTR_3_PRIME NimC2 & 1 other DOWNSTREAM NimC2
3R	2801915	3R_2801915_SNP [dm3] 3R_6976193_SNP [dm6]	C	G	3.247e^-4	0.817	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3R	7156415	3R_7156415_SNP [dm3] 3R_11330693_SNP [dm6]	C	T	3.252e^-4	0.817	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9666222	X_9666222_SNP [dm3] X_9772189_SNP [dm6]	A	G	3.254e^-4	0.817	INTERGENIC
2L	3342897	2L_3342897_SNP [dm3] 2L_3342897_SNP [dm6]	G	A	3.256e^-4	0.817	INTRON E23	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3812897	2R_3812897_SNP [dm3] 2R_7925392_SNP [dm6]	G	T	3.265e^-4	0.817	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	20572826	2L_20572826_SNP [dm3] 2L_20572826_SNP [dm6]	T	G	3.272e^-4	0.817	INTRON CR45347
3L	3611861	3L_3611861_SNP [dm3] 3L_3611861_SNP [dm6]	G	C	3.273e^-4	0.817	UPSTREAM CG10359 INTERGENIC
3R	2620613	3R_2620613_SNP [dm3] 3R_6794891_SNP [dm6]	C	A	3.282e^-4	0.817	INTRON Dfd
X	2652982	X_2652982_SNP [dm3] X_2758949_SNP [dm6]	A	G	3.288e^-4	0.817	INTRON kirre
3L	6091905	3L_6091905_SNP [dm3] 3L_6098805_SNP [dm6]	G	T	3.290e^-4	0.817	INTRON Ets65A
3L	17089422	3L_17089422_SNP [dm3] 3L_17096322_SNP [dm6]	C	G	3.290e^-4	0.817	INTRON Rbp6
2R	6393640	2R_6393640_SNP [dm3] 2R_10506135_SNP [dm6]	T	G	3.306e^-4	0.817	INTRON lola	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13183078	X_13183078_SNP [dm3] X_13289045_SNP [dm6]	T	C	3.309e^-4	0.817	SYNONYMOUS_CODING CG15744	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18400314	3L_18400314_SNP [dm3] 3L_18407214_SNP [dm6]	A	T	3.310e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs
3R	13599107	3R_13599107_SNP [dm3] 3R_17773385_SNP [dm6]	A	C	3.313e^-4	0.817	INTRON CG43102
2L	17432026	2L_17432026_DEL [dm3] 2L_17432026_DEL [dm6]	AATGC	A	3.321e^-4	0.817	INTRON Dif
3L	2044248	3L_2044248_SNP [dm3] 3L_2044248_SNP [dm6]	C	T	3.327e^-4	0.817	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7069058	2R_7069058_SNP [dm3] 2R_11181553_SNP [dm6]	A	T	3.342e^-4	0.817	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14470809	3R_14470809_SNP [dm3] 3R_18645087_SNP [dm6]	A	G	3.343e^-4	0.817	NON_SYNONYMOUS_CODING qin
3R	8017976	3R_8017976_SNP [dm3] 3R_12192254_SNP [dm6]	A	G	3.352e^-4	0.817	DOWNSTREAM CG4810 INTERGENIC	TF binding site mE1_TFBS_cad
2R	16934507	2R_16934507_DEL [dm3] 2R_21047002_DEL [dm6]	AG	A	3.360e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15257177	3L_15257177_SNP [dm3] 3L_15264077_SNP [dm6]	C	T	3.362e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8028000	3R_8028000_SNP [dm3] 3R_12202278_SNP [dm6]	C	T	3.363e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_inv
2L	3401331	2L_3401331_SNP [dm3] 2L_3401331_SNP [dm6]	T	A	3.367e^-4	0.817	INTERGENIC
3R	8101433	3R_8101433_SNP [dm3] 3R_12275711_SNP [dm6]	T	A	3.376e^-4	0.817	INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	9143376	2R_9143376_SNP [dm3] 2R_13255871_SNP [dm6]	T	A	3.382e^-4	0.817	UPSTREAM CR44343 & 1 other INTERGENIC
2R	19669974	2R_19669974_SNP [dm3] 2R_23782451_SNP [dm6]	C	T	3.384e^-4	0.817	INTRON CG9850	TF binding site mE1_TFBS_chinmo
3L	6091713	3L_6091713_SNP [dm3] 3L_6098613_SNP [dm6]	C	T	3.393e^-4	0.817	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	13822648	2L_13822648_SNP [dm3] 2L_13822648_SNP [dm6]	A	T	3.400e^-4	0.817	INTRON b	TF binding site mE1_TFBS_cad
2R	20195111	2R_20195111_SNP [dm3] 2R_24307588_SNP [dm6]	G	A	3.405e^-4	0.817	INTRON betaTub60D	regulatory region REDfly_CRMs
2R	9053795	2R_9053795_SNP [dm3] 2R_13166290_SNP [dm6]	A	C	3.408e^-4	0.817	INTRON GLaz
3R	10279608	3R_10279608_SNP [dm3] 3R_14453886_SNP [dm6]	T	C	3.410e^-4	0.817	INTRON cv-c
2R	19415959	2R_19415959_SNP [dm3] 2R_23528436_SNP [dm6]	G	A	3.425e^-4	0.817	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
2R	13790998	2R_13790998_SNP [dm3] 2R_17903493_SNP [dm6]	A	T	3.428e^-4	0.817	INTRON Elk
2L	12261063	2L_12261063_SNP [dm3] 2L_12261063_SNP [dm6]	T	A	3.434e^-4	0.817	INTRON aret
3R	25434780	3R_25434780_SNP [dm3] 3R_29609058_SNP [dm6]	G	A	3.439e^-4	0.817	DOWNSTREAM Diedel2 INTRON alph
2L	11197137	2L_11197137_SNP [dm3] 2L_11197137_SNP [dm6]	T	C	3.441e^-4	0.817	INTRON Ca-beta
3L	16954071	3L_16954071_SNP [dm3] 3L_16960971_SNP [dm6]	T	C	3.448e^-4	0.817	INTRON Nc73EF
3L	9396676	3L_9396676_SNP [dm3] 3L_9403576_SNP [dm6]	G	A	3.449e^-4	0.817	INTERGENIC
2R	4699584	2R_4699584_SNP [dm3] 2R_8812079_SNP [dm6]	C	A	3.451e^-4	0.817	INTRON sns	TF binding site mE1_TFBS_cad
2L	2255273	2L_2255273_SNP [dm3] 2L_2255273_SNP [dm6]	A	G	3.459e^-4	0.817	UPSTREAM Send1 INTERGENIC
2L	14539877	2L_14539877_SNP [dm3] 2L_14539877_SNP [dm6]	T	C	3.459e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19052678	2L_19052678_SNP [dm3] 2L_19052678_SNP [dm6]	A	C	3.460e^-4	0.817	SYNONYMOUS_CODING Rpn3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	10821416	2L_10821416_SNP [dm3] 2L_10821416_SNP [dm6]	T	C	3.462e^-4	0.817	SYNONYMOUS_CODING CG17134 DOWNSTREAM CG6508 INTRON Nos
2L	8866095	2L_8866095_SNP [dm3] 2L_8866095_SNP [dm6]	G	T	3.462e^-4	0.817	SYNONYMOUS_CODING CG32983 UPSTREAM CG9483 DOWNSTREAM CG32988 EXON CR45260	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	5882698	2R_5882698_SNP [dm3] 2R_9995193_SNP [dm6]	T	G	3.464e^-4	0.817	UTR_3_PRIME Pka-R2 DOWNSTREAM Pka-R2
2R	7072297	2R_7072297_SNP [dm3] 2R_11184792_SNP [dm6]	C	T	3.467e^-4	0.817	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13822634	2L_13822634_SNP [dm3] 2L_13822634_SNP [dm6]	T	G	3.475e^-4	0.817	INTRON b	TF binding site mE1_TFBS_cad
2L	13671315	2L_13671315_SNP [dm3] 2L_13671315_SNP [dm6]	C	A	3.476e^-4	0.817	DOWNSTREAM CG18507 INTRON CG18507
2R	12025788	2R_12025788_SNP [dm3] 2R_16138283_SNP [dm6]	G	T	3.481e^-4	0.817	UPSTREAM Got1 DOWNSTREAM spin INTERGENIC
3R	24660106	3R_24660106_SNP [dm3] 3R_28834384_SNP [dm6]	T	A	3.491e^-4	0.817	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
2R	15885072	2R_15885072_SNP [dm3] 2R_19997567_SNP [dm6]	T	A	3.492e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2R	21049630	2R_21049630_SNP [dm3] 2R_25162107_SNP [dm6]	G	A	3.494e^-4	0.817	INTERGENIC
X	15231293	X_15231293_SNP [dm3] X_15337260_SNP [dm6]	G	A	3.509e^-4	0.817	SYNONYMOUS_CODING HDAC6	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8787696	2L_8787696_SNP [dm3] 2L_8787696_SNP [dm6]	G	T	3.513e^-4	0.817	INTERGENIC
3R	11550459	3R_11550459_SNP [dm3] 3R_15724737_SNP [dm6]	C	T	3.516e^-4	0.817	INTERGENIC
3R	7737381	3R_7737381_SNP [dm3] 3R_11911659_SNP [dm6]	C	G	3.521e^-4	0.817	INTRON Cad87A
2R	6584859	2R_6584859_SNP [dm3] 2R_10697354_SNP [dm6]	A	G	3.522e^-4	0.817	INTRON stan
2R	5334093	2R_5334093_SNP [dm3] 2R_9446588_SNP [dm6]	T	C	3.522e^-4	0.817	UPSTREAM CR45321 INTRON Camta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11206105	X_11206105_SNP [dm3] X_11312072_SNP [dm6]	C	T	3.524e^-4	0.817	UPSTREAM Ir10a INTERGENIC
2L	22027255	2L_22027255_SNP [dm3] 2L_22027255_SNP [dm6]	G	A	3.526e^-4	0.817	INTERGENIC
2L	11410654	2L_11410654_SNP [dm3] 2L_11410654_SNP [dm6]	T	C	3.531e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs
2L	11413441	2L_11413441_SNP [dm3] 2L_11413441_SNP [dm6]	G	A	3.531e^-4	0.817	INTERGENIC
2L	16231720	2L_16231720_SNP [dm3] 2L_16231720_SNP [dm6]	G	T	3.533e^-4	0.817	UTR_5_PRIME CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5648441	3L_5648441_SNP [dm3] 3L_5655341_SNP [dm6]	G	A	3.533e^-4	0.817	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8877820	3L_8877820_SNP [dm3] 3L_8884720_SNP [dm6]	C	T	3.538e^-4	0.817	INTRON dally
2R	12499118	2R_12499118_SNP [dm3] 2R_16611613_SNP [dm6]	T	A	3.544e^-4	0.817	UPSTREAM CG5065 INTRON CG5065	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18509960	2L_18509960_SNP [dm3] 2L_18509960_SNP [dm6]	C	A	3.557e^-4	0.817	INTRON CG10178
3L	9988858	3L_9988858_INS [dm3] 3L_9995758_INS [dm6]	A	AATA	3.560e^-4	0.817	INTRON dpr6
3R	8030156	3R_8030156_SNP [dm3] 3R_12204434_SNP [dm6]	C	A	3.564e^-4	0.817	INTERGENIC
3R	24358971	3R_24358971_SNP [dm3] 3R_28533249_SNP [dm6]	C	T	3.573e^-4	0.817	INTRON Ppn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8129720	X_8129720_SNP [dm3] X_8235687_SNP [dm6]	T	C	3.576e^-4	0.817	SYNONYMOUS_CODING sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5093625	X_5093625_SNP [dm3] X_5199592_SNP [dm6]	A	G	3.581e^-4	0.817	INTRON rg & 1 other
X	17298042	X_17298042_SNP [dm3] X_17404009_SNP [dm6]	T	A	3.587e^-4	0.817	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	17533286	X_17533286_SNP [dm3] X_17639253_SNP [dm6]	C	T	3.593e^-4	0.817	UTR_3_PRIME RhoGAPp190 DOWNSTREAM CG5800
3R	2762841	3R_2762841_SNP [dm3] 3R_6937119_SNP [dm6]	A	G	3.594e^-4	0.817	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18014368	2R_18014368_SNP [dm3] 2R_22126863_SNP [dm6]	C	T	3.602e^-4	0.817	SYNONYMOUS_CODING GM130 UPSTREAM NtR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10842356	2R_10842356_SNP [dm3] 2R_14954851_SNP [dm6]	C	G	3.602e^-4	0.817	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10842360	2R_10842360_SNP [dm3] 2R_14954855_SNP [dm6]	A	C	3.602e^-4	0.817	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9817427	3L_9817427_SNP [dm3] 3L_9824327_SNP [dm6]	T	G	3.616e^-4	0.817	UPSTREAM Ilp5 INTRON CG43897
X	16933501	X_16933501_INS [dm3] X_17039468_INS [dm6]	A	ACAATGGGTAATAAA...	3.620e^-4	0.817	INTRON CG45002
2L	15296773	2L_15296773_SNP [dm3] 2L_15296773_SNP [dm6]	A	T	3.620e^-4	0.817	EXON CR43764	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14432633	2L_14432633_SNP [dm3] 2L_14432633_SNP [dm6]	A	G	3.624e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3264542	2R_3264542_SNP [dm3] 2R_7377037_SNP [dm6]	A	G	3.629e^-4	0.817	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17801481	3L_17801481_INS [dm3] 3L_17808381_INS [dm6]	A	TC	3.634e^-4	0.817	DOWNSTREAM cln3 INTRON CG32191	TF binding site mE1_TFBS_chinmo
2L	263485	2L_263485_SNP [dm3] 2L_263485_SNP [dm6]	A	C	3.638e^-4	0.817	UTR_3_PRIME CG17075 DOWNSTREAM CR44219 INTRON CG3645	TF binding site mE1_TFBS_cad
2L	152567	2L_152567_SNP [dm3] 2L_152567_SNP [dm6]	C	A	3.641e^-4	0.817	NON_SYNONYMOUS_CODING CG42399 DOWNSTREAM CG3709 INTRON CG11455	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10008514	2L_10008514_DEL [dm3] 2L_10008514_DEL [dm6]	TT	T	3.643e^-4	0.817	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
X	8129879	X_8129879_SNP [dm3] X_8235846_SNP [dm6]	C	G	3.645e^-4	0.817	INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1724447	2L_1724447_SNP [dm3] 2L_1724447_SNP [dm6]	C	A	3.651e^-4	0.817	UPSTREAM Rim2 DOWNSTREAM Eno INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	21079264	2R_21079264_SNP [dm3] 2R_25191741_SNP [dm6]	A	T	3.655e^-4	0.817	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5443757	2L_5443757_SNP [dm3] 2L_5443757_SNP [dm6]	T	C	3.658e^-4	0.817	INTERGENIC
2R	5698521	2R_5698521_SNP [dm3] 2R_9811016_SNP [dm6]	C	A	3.671e^-4	0.817	UTR_3_PRIME CG1648 DOWNSTREAM CG1648	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	6416333	2L_6416333_SNP [dm3] 2L_6416333_SNP [dm6]	G	A	3.682e^-4	0.817	SYNONYMOUS_CODING Tig DOWNSTREAM CG13982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	19121674	2L_19121674_SNP [dm3] 2L_19121674_SNP [dm6]	A	G	3.682e^-4	0.817	UTR_3_PRIME l_2_37Cc DOWNSTREAM l_2_37Cc	regulatory region REDfly_CRMs
X	9655078	X_9655078_SNP [dm3] X_9761045_SNP [dm6]	T	G	3.696e^-4	0.817	INTERGENIC
2L	3530861	2L_3530861_SNP [dm3] 2L_3530861_SNP [dm6]	A	T	3.700e^-4	0.817	UTR_5_PRIME Che-13 UPSTREAM Spindly	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10565878	2L_10565878_SNP [dm3] 2L_10565878_SNP [dm6]	T	G	3.700e^-4	0.817	INTRON Trim9
2L	10028343	2L_10028343_SNP [dm3] 2L_10028343_SNP [dm6]	T	A	3.702e^-4	0.817	NON_SYNONYMOUS_CODING CG13127
2L	15342209	2L_15342209_SNP [dm3] 2L_15342209_SNP [dm6]	C	T	3.705e^-4	0.817	INTERGENIC
3L	11309245	3L_11309245_SNP [dm3] 3L_11316145_SNP [dm6]	C	T	3.712e^-4	0.817	EXON CR44361	TF binding site BDTNP1_TFBS_twi
2L	10098070	2L_10098070_DEL [dm3] 2L_10098070_DEL [dm6]	AA	A	3.713e^-4	0.817	INTRON CG34109 & 1 other
3L	9395702	3L_9395702_SNP [dm3] 3L_9402602_SNP [dm6]	C	T	3.715e^-4	0.817	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7969795	2L_7969795_SNP [dm3] 2L_7969795_SNP [dm6]	A	G	3.715e^-4	0.817	INTRON Snoo
2L	20806357	2L_20806357_SNP [dm3] 2L_20806357_SNP [dm6]	C	T	3.718e^-4	0.817	INTRON CG9328
3L	2882217	3L_2882217_SNP [dm3] 3L_2882217_SNP [dm6]	G	C	3.719e^-4	0.817	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9395676	3L_9395676_SNP [dm3] 3L_9402576_SNP [dm6]	T	C	3.735e^-4	0.817	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	17362412	X_17362412_SNP [dm3] X_17468379_SNP [dm6]	T	C	3.739e^-4	0.817	INTRON CG43658
2L	14904792	2L_14904792_SNP [dm3] 2L_14904792_SNP [dm6]	A	G	3.742e^-4	0.817	INTERGENIC
2R	2475967	2R_2475967_SNP [dm3] 2R_6588462_SNP [dm6]	T	A	3.744e^-4	0.817	INTRON jing
2L	10981971	2L_10981971_DEL [dm3] 2L_10981971_DEL [dm6]	AAA	A	3.755e^-4	0.817	UTR_3_PRIME SCAR DOWNSTREAM piwi & 1 other
3R	14550932	3R_14550932_SNP [dm3] 3R_18725210_SNP [dm6]	G	T	3.757e^-4	0.817	SYNONYMOUS_CODING Cha DOWNSTREAM CG7714	TF binding site mE1_TFBS_chinmo
2L	18509953	2L_18509953_SNP [dm3] 2L_18509953_SNP [dm6]	T	A	3.779e^-4	0.817	INTRON CG10178
2R	19504543	2R_19504543_SNP [dm3] 2R_23617020_SNP [dm6]	C	T	3.787e^-4	0.817	UPSTREAM CG17664 INTERGENIC
3L	9988334	3L_9988334_SNP [dm3] 3L_9995234_SNP [dm6]	A	T	3.789e^-4	0.817	INTRON dpr6
X	18378364	X_18378364_SNP [dm3] X_18484331_SNP [dm6]	G	A	3.790e^-4	0.817	UPSTREAM Hayan DOWNSTREAM psh INTERGENIC
2L	11203311	2L_11203311_SNP [dm3] 2L_11203311_SNP [dm6]	T	C	3.805e^-4	0.817	SPLICE_SITE_REGION Ca-beta START_GAINED Ca-beta UTR_5_PRIME Ca-beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18446528	X_18446528_SNP [dm3] X_18552495_SNP [dm6]	C	G	3.805e^-4	0.817	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25622038	3R_25622038_SNP [dm3] 3R_29796316_SNP [dm6]	A	G	3.808e^-4	0.817	SYNONYMOUS_CODING CG7837 DOWNSTREAM sro	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10352042	2L_10352042_SNP [dm3] 2L_10352042_SNP [dm6]	T	G	3.810e^-4	0.817	NON_SYNONYMOUS_CODING CG34367 INTRON CG34367
2R	20419380	2R_20419380_DEL [dm3] 2R_24531857_DEL [dm6]	GTTTTGGTTCAATCGG...	G	3.810e^-4	0.817	UPSTREAM CG13585 & 1 other INTRON CG13585	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17692833	2L_17692833_SNP [dm3] 2L_17692833_SNP [dm6]	A	G	3.812e^-4	0.817	INTRON CadN
X	8365089	X_8365089_SNP [dm3] X_8471056_SNP [dm6]	A	G	3.818e^-4	0.817	INTRON CG33223 & 1 other
2L	3959708	2L_3959708_SNP [dm3] 2L_3959708_SNP [dm6]	C	T	3.824e^-4	0.817	INTRON fred
3R	2355518	3R_2355518_SNP [dm3] 3R_6529796_SNP [dm6]	G	C	3.825e^-4	0.817	UTR_3_PRIME dpr11 DOWNSTREAM dpr11
3R	17670911	3R_17670911_SNP [dm3] 3R_21845189_SNP [dm6]	C	A	3.829e^-4	0.817	NON_SYNONYMOUS_CODING Gr93c UPSTREAM CR44087 DOWNSTREAM Gr93d
2R	3577768	2R_3577768_SNP [dm3] 2R_7690263_SNP [dm6]	T	C	3.829e^-4	0.817	INTRON CG1399
3R	10293411	3R_10293411_SNP [dm3] 3R_14467689_SNP [dm6]	T	A	3.832e^-4	0.817	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17298043	X_17298043_SNP [dm3] X_17404010_SNP [dm6]	A	T	3.836e^-4	0.817	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	8129876	X_8129876_SNP [dm3] X_8235843_SNP [dm6]	C	T	3.842e^-4	0.817	INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14219596	3L_14219596_SNP [dm3] 3L_14226496_SNP [dm6]	A	T	3.850e^-4	0.817	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	9330921	3L_9330921_SNP [dm3] 3L_9337821_SNP [dm6]	C	T	3.851e^-4	0.817	SYNONYMOUS_CODING PGRP-LA UTR_3_PRIME PGRP-LA UPSTREAM PGRP-LC
2R	1384895	2R_1384895_SNP [dm3] 2R_5497390_SNP [dm6]	C	T	3.854e^-4	0.817	INTRON CG30438
X	5040081	X_5040081_SNP [dm3] X_5146048_SNP [dm6]	T	C	3.856e^-4	0.817	INTRON rg & 1 other
2L	2268055	2L_2268055_SNP [dm3] 2L_2268055_SNP [dm6]	G	C	3.869e^-4	0.817	DOWNSTREAM CG17242 INTERGENIC
2R	11643276	2R_11643276_SNP [dm3] 2R_15755771_SNP [dm6]	C	A	3.870e^-4	0.817	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15508451	2L_15508451_SNP [dm3] 2L_15508451_SNP [dm6]	C	T	3.892e^-4	0.817	INTERGENIC
3L	12046227	3L_12046227_SNP [dm3] 3L_12053127_SNP [dm6]	G	A	3.895e^-4	0.817	INTRON rols
2L	11930551	2L_11930551_SNP [dm3] 2L_11930551_SNP [dm6]	G	A	3.899e^-4	0.817	INTERGENIC
2L	7697940	2L_7697940_SNP [dm3] 2L_7697940_SNP [dm6]	C	A	3.901e^-4	0.817	INTRON Tep2
3R	2773966	3R_2773966_SNP [dm3] 3R_6948244_SNP [dm6]	G	C	3.902e^-4	0.817	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6091715	3L_6091715_SNP [dm3] 3L_6098615_SNP [dm6]	A	C	3.908e^-4	0.817	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	13983060	2L_13983060_SNP [dm3] 2L_13983060_SNP [dm6]	C	A	3.914e^-4	0.817	UTR_3_PRIME NimC2 & 1 other DOWNSTREAM NimC2
2L	18639959	2L_18639959_SNP [dm3] 2L_18639959_SNP [dm6]	T	G	3.915e^-4	0.817	INTRON MESR3
2L	4296544	2L_4296544_SNP [dm3] 2L_4296544_SNP [dm6]	C	T	3.926e^-4	0.817	INTRON tutl
3R	18005009	3R_18005009_SNP [dm3] 3R_22179287_SNP [dm6]	C	T	3.935e^-4	0.817	INTRON SKIP
X	9322347	X_9322347_SNP [dm3] X_9428314_SNP [dm6]	A	C	3.943e^-4	0.817	INTRON mgl	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	19915719	2R_19915719_INS [dm3] 2R_24028196_INS [dm6]	A	ACTTTTTATA	3.953e^-4	0.817	DOWNSTREAM PebIII INTRON HSPC300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14763147	X_14763147_SNP [dm3] X_14869114_SNP [dm6]	T	C	3.953e^-4	0.817	INTRON Flo2 & 1 other
2L	21078217	2L_21078217_SNP [dm3] 2L_21078217_SNP [dm6]	T	C	3.957e^-4	0.817	INTRON tadr
3R	19320799	3R_19320799_SNP [dm3] 3R_23495077_SNP [dm6]	A	C	3.959e^-4	0.817	INTERGENIC
2R	9892970	2R_9892970_SNP [dm3] 2R_14005465_SNP [dm6]	A	G	3.960e^-4	0.817	DOWNSTREAM mir-4978 INTRON mam
2L	6284151	2L_6284151_SNP [dm3] 2L_6284151_SNP [dm6]	C	T	3.973e^-4	0.817	INTRON Ddr
2L	14630873	2L_14630873_SNP [dm3] 2L_14630873_SNP [dm6]	C	T	3.977e^-4	0.817	INTRON osp
X	3444930	X_3444930_SNP [dm3] X_3550897_SNP [dm6]	C	T	3.984e^-4	0.817	INTRON CG32791
X	6311590	X_6311590_SNP [dm3] X_6417557_SNP [dm6]	C	T	3.991e^-4	0.817	INTERGENIC
X	18173959	X_18173959_SNP [dm3] X_18279926_SNP [dm6]	T	A	3.996e^-4	0.817	INTRON upd3
3L	1906500	3L_1906500_SNP [dm3] 3L_1906500_SNP [dm6]	T	G	4.001e^-4	0.817	INTRON CG1887
2L	14652618	2L_14652618_SNP [dm3] 2L_14652618_SNP [dm6]	A	G	4.002e^-4	0.817	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21763249	2L_21763249_SNP [dm3] 2L_21763249_SNP [dm6]	C	T	4.005e^-4	0.817	INTRON CG31612
3R	10550183	3R_10550183_SNP [dm3] 3R_14724461_SNP [dm6]	G	A	4.009e^-4	0.817	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	160380	2L_160380_SNP [dm3] 2L_160380_SNP [dm6]	G	A	4.010e^-4	0.817	UTR_5_PRIME spen INTRON spen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	14754934	2L_14754934_SNP [dm3] 2L_14754934_SNP [dm6]	A	C	4.012e^-4	0.817	INTERGENIC
2R	15885126	2R_15885126_SNP [dm3] 2R_19997621_SNP [dm6]	C	T	4.012e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	18568780	2L_18568780_SNP [dm3] 2L_18568780_SNP [dm6]	T	A	4.024e^-4	0.817	INTRON Pde11
2R	5334094	2R_5334094_SNP [dm3] 2R_9446589_SNP [dm6]	G	T	4.024e^-4	0.817	UPSTREAM CR45321 INTRON Camta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9896575	2R_9896575_SNP [dm3] 2R_14009070_SNP [dm6]	C	G	4.029e^-4	0.817	UPSTREAM mam INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	24358324	3R_24358324_SNP [dm3] 3R_28532602_SNP [dm6]	T	G	4.029e^-4	0.817	INTRON Ppn	TF binding site mE1_TFBS_chinmo
2R	20306004	2R_20306004_SNP [dm3] 2R_24418481_SNP [dm6]	G	T	4.033e^-4	0.817	INTRON prom	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8112764	3R_8112764_SNP [dm3] 3R_12287042_SNP [dm6]	C	T	4.038e^-4	0.817	INTRON svp	TF binding site BDTNP1_TFBS_twi
3L	4720266	3L_4720266_INS [dm3] 3L_4720266_INS [dm6]	C	CTAT	4.041e^-4	0.817	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1595556	3L_1595556_SNP [dm3] 3L_1595556_SNP [dm6]	A	C	4.043e^-4	0.817	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11370023	2L_11370023_SNP [dm3] 2L_11370023_SNP [dm6]	T	A	4.044e^-4	0.817	INTRON salr
3R	10546271	3R_10546271_SNP [dm3] 3R_14720549_SNP [dm6]	T	C	4.044e^-4	0.817	INTRON kibra	TF binding site BDTNP1_TFBS_dl
X	6675726	X_6675726_SNP [dm3] X_6781693_SNP [dm6]	G	A	4.044e^-4	0.817	UTR_3_PRIME C3G
3L	15788584	3L_15788584_INS [dm3] 3L_15795484_INS [dm6]	T	TA	4.045e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_D
X	18927775	X_18927775_SNP [dm3] X_19033742_SNP [dm6]	T	A	4.049e^-4	0.817	INTERGENIC
3R	8036141	3R_8036141_SNP [dm3] 3R_12210419_SNP [dm6]	A	G	4.054e^-4	0.817	UPSTREAM CG4830 INTERGENIC
2L	9998255	2L_9998255_SNP [dm3] 2L_9998255_SNP [dm6]	A	G	4.054e^-4	0.817	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
2L	18509973	2L_18509973_SNP [dm3] 2L_18509973_SNP [dm6]	A	T	4.059e^-4	0.817	INTRON CG10178
3L	1590943	3L_1590943_SNP [dm3] 3L_1590943_SNP [dm6]	T	C	4.060e^-4	0.817	INTRON CG13917
2L	15244957	2L_15244957_SNP [dm3] 2L_15244957_SNP [dm6]	A	G	4.078e^-4	0.817	INTRON ZnT35C
2L	7047935	2L_7047935_SNP [dm3] 2L_7047935_SNP [dm6]	C	T	4.078e^-4	0.817	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb mE1_TFBS_cad
2L	10565826	2L_10565826_SNP [dm3] 2L_10565826_SNP [dm6]	C	T	4.081e^-4	0.817	INTRON Trim9
3L	9611475	3L_9611475_SNP [dm3] 3L_9618375_SNP [dm6]	A	G	4.085e^-4	0.817	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
3L	15257342	3L_15257342_SNP [dm3] 3L_15264242_SNP [dm6]	C	A	4.091e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6091891	3L_6091891_SNP [dm3] 3L_6098791_SNP [dm6]	A	G	4.098e^-4	0.817	INTRON Ets65A
2L	11412403	2L_11412403_SNP [dm3] 2L_11412403_SNP [dm6]	T	G	4.099e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs
3R	2695960	3R_2695960_SNP [dm3] 3R_6870238_SNP [dm6]	C	A	4.103e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	3905919	2R_3905919_SNP [dm3] 2R_8018414_SNP [dm6]	A	C	4.106e^-4	0.817	UPSTREAM CR45267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9395701	3L_9395701_SNP [dm3] 3L_9402601_SNP [dm6]	G	A	4.113e^-4	0.817	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	10900149	2L_10900149_SNP [dm3] 2L_10900149_SNP [dm6]	G	T	4.116e^-4	0.817	DOWNSTREAM CG14070 INTERGENIC
2L	4444273	2L_4444273_SNP [dm3] 2L_4444273_SNP [dm6]	A	G	4.120e^-4	0.817	SYNONYMOUS_CODING morgue UPSTREAM Elp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	10008429	2L_10008429_INS [dm3] 2L_10008429_INS [dm6]	T	AA	4.120e^-4	0.817	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
2L	18528476	2L_18528476_SNP [dm3] 2L_18528476_SNP [dm6]	C	A	4.121e^-4	0.817	INTRON CG10211
2R	11163875	2R_11163875_SNP [dm3] 2R_15276370_SNP [dm6]	A	T	4.125e^-4	0.817	INTRON Trpm
2L	14103886	2L_14103886_SNP [dm3] 2L_14103886_SNP [dm6]	G	T	4.129e^-4	0.817	UPSTREAM CG16879 INTERGENIC
3L	11037450	3L_11037450_SNP [dm3] 3L_11044350_SNP [dm6]	A	T	4.139e^-4	0.817	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2L	3406969	2L_3406969_SNP [dm3] 2L_3406969_SNP [dm6]	G	T	4.140e^-4	0.817	SYNONYMOUS_CODING pgant2
3R	27098816	3R_27098816_SNP [dm3] 3R_31273094_SNP [dm6]	T	A	4.149e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19095883	2L_19095883_SNP [dm3] 2L_19095883_SNP [dm6]	C	T	4.149e^-4	0.817	INTRON Lim3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5408567	2L_5408567_SNP [dm3] 2L_5408567_SNP [dm6]	C	T	4.159e^-4	0.817	INTRON H15	TF binding site mE1_TFBS_cad
2L	6409994	2L_6409994_SNP [dm3] 2L_6409994_SNP [dm6]	C	G	4.159e^-4	0.817	INTRON CG42368
2L	11424133	2L_11424133_SNP [dm3] 2L_11424133_SNP [dm6]	T	G	4.166e^-4	0.817	INTERGENIC
2L	14216800	2L_14216800_SNP [dm3] 2L_14216800_SNP [dm6]	G	C	4.166e^-4	0.817	INTRON Dyrk2	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	10404286	2R_10404286_SNP [dm3] 2R_14516781_SNP [dm6]	G	A	4.170e^-4	0.817	INTERGENIC
3L	1683450	3L_1683450_SNP [dm3] 3L_1683450_SNP [dm6]	T	G	4.171e^-4	0.817	INTRON CG7991
3L	11037850	3L_11037850_SNP [dm3] 3L_11044750_SNP [dm6]	G	A	4.176e^-4	0.817	INTRON CG43693	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	10949385	2R_10949385_SNP [dm3] 2R_15061880_SNP [dm6]	A	C	4.181e^-4	0.817	INTERGENIC
2R	1396138	2R_1396138_SNP [dm3] 2R_5508633_SNP [dm6]	C	T	4.189e^-4	0.817	UPSTREAM TpnC4 INTRON CG30438	transposable element FlyBase
2L	14671119	2L_14671119_SNP [dm3] 2L_14671119_SNP [dm6]	C	A	4.191e^-4	0.817	INTRON osp
2R	20062455	2R_20062455_SNP [dm3] 2R_24174932_SNP [dm6]	A	G	4.192e^-4	0.817	UTR_5_PRIME Nop60B UPSTREAM mRpS17	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	5817625	X_5817625_SNP [dm3] X_5923592_SNP [dm6]	T	C	4.193e^-4	0.817	INTRON CG3726
3L	13088538	3L_13088538_SNP [dm3] 3L_13095438_SNP [dm6]	G	T	4.193e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	15738206	3L_15738206_SNP [dm3] 3L_15745106_SNP [dm6]	A	G	4.195e^-4	0.817	INTERGENIC
2L	8030608	2L_8030608_SNP [dm3] 2L_8030608_SNP [dm6]	A	C	4.198e^-4	0.817	UPSTREAM Cka DOWNSTREAM baf INTRON CG7367	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2789932	3R_2789932_SNP [dm3] 3R_6964210_SNP [dm6]	G	C	4.207e^-4	0.817	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3L	12495380	3L_12495380_SNP [dm3] 3L_12502280_SNP [dm6]	A	T	4.213e^-4	0.817	NON_SYNONYMOUS_CODING CG10681 UPSTREAM CG10638 DOWNSTREAM CG10646	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13941607	2L_13941607_DEL [dm3] 2L_13941607_DEL [dm6]	TT	T	4.214e^-4	0.817	INTRON Ance-3
2L	10824153	2L_10824153_SNP [dm3] 2L_10824153_SNP [dm6]	T	G	4.219e^-4	0.817	INTRON Nos
2L	11903898	2L_11903898_SNP [dm3] 2L_11903898_SNP [dm6]	C	T	4.222e^-4	0.817	INTRON Pde1c
3R	25649003	3R_25649003_SNP [dm3] 3R_29823281_SNP [dm6]	T	C	4.223e^-4	0.817	INTRON neo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11137705	2R_11137705_SNP [dm3] 2R_15250200_SNP [dm6]	T	C	4.230e^-4	0.817	INTRON scb	TF binding site mE1_TFBS_cad
2R	10607818	2R_10607818_SNP [dm3] 2R_14720313_SNP [dm6]	G	A	4.230e^-4	0.817	INTERGENIC
2L	4689147	2L_4689147_SNP [dm3] 2L_4689147_SNP [dm6]	A	G	4.232e^-4	0.817	SYNONYMOUS_CODING CG3251 DOWNSTREAM Elba3
2L	14730019	2L_14730019_SNP [dm3] 2L_14730019_SNP [dm6]	T	C	4.247e^-4	0.817	UTR_5_PRIME CG42685
3L	4316889	3L_4316889_SNP [dm3] 3L_4316889_SNP [dm6]	C	T	4.252e^-4	0.817	SYNONYMOUS_CODING Claspin
3R	8028387	3R_8028387_SNP [dm3] 3R_12202665_SNP [dm6]	A	T	4.252e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9395675	3L_9395675_SNP [dm3] 3L_9402575_SNP [dm6]	G	A	4.255e^-4	0.817	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	9655077	X_9655077_SNP [dm3] X_9761044_SNP [dm6]	G	C	4.255e^-4	0.817	INTERGENIC
2R	12813204	2R_12813204_SNP [dm3] 2R_16925699_SNP [dm6]	T	C	4.259e^-4	0.817	UTR_5_PRIME Pkc53E INTRON Pkc53E	TF binding site mE1_TFBS_HSA
3L	10788030	3L_10788030_SNP [dm3] 3L_10794930_SNP [dm6]	G	A	4.263e^-4	0.817	UPSTREAM CR44546 INTERGENIC
2R	10533922	2R_10533922_SNP [dm3] 2R_14646417_SNP [dm6]	T	C	4.263e^-4	0.817	DOWNSTREAM CG10139 INTERGENIC
3R	20006836	3R_20006836_SNP [dm3] 3R_24181114_SNP [dm6]	A	C	4.264e^-4	0.817	UTR_3_PRIME CG13606 INTRON CG13606
2L	19214222	2L_19214222_SNP [dm3] 2L_19214222_SNP [dm6]	A	C	4.266e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_sens
3L	9522932	3L_9522932_SNP [dm3] 3L_9529832_SNP [dm6]	A	G	4.270e^-4	0.817	UTR_5_PRIME Or67a
X	8178709	X_8178709_SNP [dm3] X_8284676_SNP [dm6]	A	C	4.276e^-4	0.817	INTRON nAChRalpha3
X	14545703	X_14545703_INS [dm3] X_14651670_INS [dm6]	T	TT	4.276e^-4	0.817	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	8122161	3R_8122161_SNP [dm3] 3R_12296439_SNP [dm6]	C	A	4.278e^-4	0.817	DOWNSTREAM svp INTRON svp
3L	1430490	3L_1430490_SNP [dm3] 3L_1430490_SNP [dm6]	C	A	4.283e^-4	0.817	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	16096770	2L_16096770_SNP [dm3] 2L_16096770_SNP [dm6]	G	A	4.283e^-4	0.817	DOWNSTREAM CG4891 INTERGENIC
3R	17413917	3R_17413917_SNP [dm3] 3R_21588195_SNP [dm6]	G	A	4.284e^-4	0.817	INTRON InR
3L	14189152	3L_14189152_SNP [dm3] 3L_14196052_SNP [dm6]	A	C	4.286e^-4	0.817	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12106443	3L_12106443_SNP [dm3] 3L_12113343_SNP [dm6]	G	A	4.292e^-4	0.817	INTERGENIC
3R	8379793	3R_8379793_SNP [dm3] 3R_12554071_SNP [dm6]	C	T	4.294e^-4	0.817	INTRON Octbeta2R
3R	21291614	3R_21291614_SNP [dm3] 3R_25465892_SNP [dm6]	T	A	4.307e^-4	0.817	INTRON Fur1
2L	6352627	2L_6352627_SNP [dm3] 2L_6352627_SNP [dm6]	T	A	4.316e^-4	0.817	SYNONYMOUS_CODING ppk7
X	9666178	X_9666178_SNP [dm3] X_9772145_SNP [dm6]	T	G	4.318e^-4	0.817	INTERGENIC
3L	9395745	3L_9395745_SNP [dm3] 3L_9402645_SNP [dm6]	G	T	4.322e^-4	0.817	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	10034816	2L_10034816_SNP [dm3] 2L_10034816_SNP [dm6]	T	A	4.326e^-4	0.817	INTRON obst-B
3L	11534469	3L_11534469_SNP [dm3] 3L_11541369_SNP [dm6]	A	G	4.328e^-4	0.817	INTRON Mob2
2L	6410493	2L_6410493_SNP [dm3] 2L_6410493_SNP [dm6]	T	A	4.328e^-4	0.817	INTRON CG42368
2L	7955222	2L_7955222_SNP [dm3] 2L_7955222_SNP [dm6]	A	T	4.334e^-4	0.817	INTRON Snoo
2L	15225841	2L_15225841_SNP [dm3] 2L_15225841_SNP [dm6]	C	T	4.334e^-4	0.817	INTERGENIC
3L	7150664	3L_7150664_DEL [dm3] 3L_7157564_DEL [dm6]	AAA	G	4.337e^-4	0.817	UPSTREAM corn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	9545597	3L_9545597_SNP [dm3] 3L_9552497_SNP [dm6]	C	A	4.345e^-4	0.817	INTRON CG42673
2L	3152977	2L_3152977_SNP [dm3] 2L_3152977_SNP [dm6]	C	G	4.352e^-4	0.817	UPSTREAM Mad INTRON Mad	TF binding site BDTNP1_TFBS_dl
3L	18400315	3L_18400315_SNP [dm3] 3L_18407215_SNP [dm6]	T	G	4.361e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs
3L	18400309	3L_18400309_SNP [dm3] 3L_18407209_SNP [dm6]	A	T	4.361e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs
2L	11148110	2L_11148110_INS [dm3] 2L_11148110_INS [dm6]	A	AA	4.362e^-4	0.817	INTRON Gyc32E
2L	14663372	2L_14663372_DEL [dm3] 2L_14663372_DEL [dm6]	ATATA	A	4.379e^-4	0.817	INTRON osp	TF binding site BDTNP1_TFBS_twi
2L	11358092	2L_11358092_SNP [dm3] 2L_11358092_SNP [dm6]	A	T	4.381e^-4	0.817	UPSTREAM salr INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	16029239	3L_16029239_SNP [dm3] 3L_16036139_SNP [dm6]	T	C	4.382e^-4	0.817	SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_twi
3R	8016469	3R_8016469_SNP [dm3] 3R_12190747_SNP [dm6]	T	A	4.388e^-4	0.817	INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

Cuticul_6_10_C26_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results