DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.333e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2697 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	14130032	3R_14130032_SNP [dm3] 3R_18304310_SNP [dm6]	C	T	1.238e^-6	0.464	SYNONYMOUS_CODING PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11652996	3L_11652996_DEL [dm3] 3L_11659896_DEL [dm6]	AC	A	1.768e^-6	0.464	INTRON CG32085
3R	7138756	3R_7138756_SNP [dm3] 3R_11313034_SNP [dm6]	T	C	1.796e^-6	0.464	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16290036	X_16290036_SNP [dm3] X_16396003_SNP [dm6]	C	T	1.979e^-6	0.464	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
3L	11652985	3L_11652985_SNP [dm3] 3L_11659885_SNP [dm6]	C	A	1.991e^-6	0.464	INTRON CG32085
3L	18837619	3L_18837619_SNP [dm3] 3L_18844519_SNP [dm6]	G	A	2.689e^-6	0.464	INTRON Indy
3L	6897312	3L_6897312_SNP [dm3] 3L_6904212_SNP [dm6]	G	C	2.806e^-6	0.464	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3684163	2L_3684163_SNP [dm3] 2L_3684163_SNP [dm6]	C	T	2.938e^-6	0.464	SYNONYMOUS_CODING CG34340	TF binding site mE1_TFBS_chinmo
3R	7138391	3R_7138391_SNP [dm3] 3R_11312669_SNP [dm6]	A	G	3.107e^-6	0.464	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8700482	2L_8700482_SNP [dm3] 2L_8700482_SNP [dm6]	G	A	3.324e^-6	0.464	UPSTREAM Hnf4 INTRON Hnf4
2R	10864666	2R_10864666_SNP [dm3] 2R_14977161_SNP [dm6]	T	G	4.022e^-6	0.464	INTRON ckn	TF binding site mE1_TFBS_sens
2L	3457086	2L_3457086_SNP [dm3] 2L_3457086_SNP [dm6]	G	T	4.220e^-6	0.464	UPSTREAM Sec5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	11885437	3R_11885437_SNP [dm3] 3R_16059715_SNP [dm6]	C	T	4.234e^-6	0.464	DOWNSTREAM CG10185 INTRON msps
3R	7138798	3R_7138798_SNP [dm3] 3R_11313076_SNP [dm6]	G	A	4.436e^-6	0.464	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11885416	3R_11885416_SNP [dm3] 3R_16059694_SNP [dm6]	C	T	4.734e^-6	0.464	DOWNSTREAM CG10185 INTRON msps
3R	11892454	3R_11892454_SNP [dm3] 3R_16066732_SNP [dm6]	A	T	4.789e^-6	0.464	INTRON CG10185	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1584689	3L_1584689_SNP [dm3] 3L_1584689_SNP [dm6]	C	T	4.813e^-6	0.464	INTRON CG13917
3R	11123604	3R_11123604_SNP [dm3] 3R_15297882_SNP [dm6]	A	G	5.039e^-6	0.464	DOWNSTREAM Tm1 INTRON Tm1
3L	10048600	3L_10048600_SNP [dm3] 3L_10055500_SNP [dm6]	C	T	5.449e^-6	0.464	INTRON dpr6
3R	9822547	3R_9822547_SNP [dm3] 3R_13996825_SNP [dm6]	G	C	5.587e^-6	0.464	INTRON rdx
2L	8700491	2L_8700491_SNP [dm3] 2L_8700491_SNP [dm6]	G	A	5.657e^-6	0.464	UPSTREAM Hnf4 INTRON Hnf4
3L	6449202	3L_6449202_SNP [dm3] 3L_6456102_SNP [dm6]	T	C	5.732e^-6	0.464	INTRON CG42747
2R	17809577	2R_17809577_SNP [dm3] 2R_21922072_SNP [dm6]	C	G	6.132e^-6	0.464	INTRON Fili
3R	11310575	3R_11310575_SNP [dm3] 3R_15484853_SNP [dm6]	A	C	6.298e^-6	0.464	UTR_3_PRIME Trissin DOWNSTREAM Trissin & 1 other
3L	5566949	3L_5566949_SNP [dm3] 3L_5573849_SNP [dm6]	C	A	6.360e^-6	0.464	INTRON Msr-110
3R	4859370	3R_4859370_SNP [dm3] 3R_9033648_SNP [dm6]	G	A	6.498e^-6	0.464	UTR_5_PRIME neur INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	3012142	X_3012142_SNP [dm3] X_3118109_SNP [dm6]	G	C	6.678e^-6	0.464	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6321073	X_6321073_SNP [dm3] X_6427040_SNP [dm6]	A	G	7.900e^-6	0.503	INTRON CG42340
3L	14081680	3L_14081680_SNP [dm3] 3L_14088580_SNP [dm6]	G	A	7.992e^-6	0.503	INTERGENIC
3R	25396193	3R_25396193_DEL [dm3] 3R_29570471_DEL [dm6]	ATTTCTACTTAAGACACAAC...	A	8.135e^-6	0.503	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25528547	3R_25528547_SNP [dm3] 3R_29702825_SNP [dm6]	A	G	8.414e^-6	0.503	INTERGENIC
3R	22516569	3R_22516569_SNP [dm3] 3R_26690847_SNP [dm6]	T	G	8.857e^-6	0.503	INTERGENIC
2R	14313837	2R_14313837_SNP [dm3] 2R_18426332_SNP [dm6]	C	T	8.858e^-6	0.503	UPSTREAM CG12263 DOWNSTREAM CG5174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11652642	3L_11652642_SNP [dm3] 3L_11659542_SNP [dm6]	C	A	9.378e^-6	0.517	INTRON CG32085
3R	4874166	3R_4874166_SNP [dm3] 3R_9048444_SNP [dm6]	T	A	1.002e^-5	0.532	UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11885421	3R_11885421_SNP [dm3] 3R_16059699_SNP [dm6]	C	T	1.021e^-5	0.532	DOWNSTREAM CG10185 INTRON msps
3L	6449187	3L_6449187_SNP [dm3] 3L_6456087_SNP [dm6]	T	C	1.083e^-5	0.549	INTRON CG42747
2L	12526969	2L_12526969_SNP [dm3] 2L_12526969_SNP [dm6]	C	T	1.302e^-5	0.614	INTRON bun
2L	14124337	2L_14124337_SNP [dm3] 2L_14124337_SNP [dm6]	T	G	1.310e^-5	0.614	INTERGENIC
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	1.336e^-5	0.614	SYNONYMOUS_CODING msps
2L	18139926	2L_18139926_SNP [dm3] 2L_18139926_SNP [dm6]	A	G	1.413e^-5	0.614	SYNONYMOUS_CODING Socs36E	TF binding site mE1_TFBS_cad
3R	4883276	3R_4883276_SNP [dm3] 3R_9057554_SNP [dm6]	T	A	1.510e^-5	0.614	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3803855	2L_3803855_SNP [dm3] 2L_3803855_SNP [dm6]	G	A	1.512e^-5	0.614	INTRON Reph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11662259	3L_11662259_SNP [dm3] 3L_11669159_SNP [dm6]	C	G	1.585e^-5	0.614	INTRON CG32085
3L	20654550	3L_20654550_SNP [dm3] 3L_20661450_SNP [dm6]	A	G	1.770e^-5	0.614	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	1673376	2L_1673376_SNP [dm3] 2L_1673376_SNP [dm6]	A	T	1.772e^-5	0.614	INTRON chinmo
3R	7737381	3R_7737381_SNP [dm3] 3R_11911659_SNP [dm6]	C	G	1.802e^-5	0.614	INTRON Cad87A
3R	5650972	3R_5650972_SNP [dm3] 3R_9825250_SNP [dm6]	T	C	1.815e^-5	0.614	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	7026951	3R_7026951_SNP [dm3] 3R_11201229_SNP [dm6]	C	A	1.845e^-5	0.614	INTRON cu
2R	12164427	2R_12164427_SNP [dm3] 2R_16276922_SNP [dm6]	A	T	1.854e^-5	0.614	NON_SYNONYMOUS_CODING CG33017 UTR_3_PRIME CG33017 DOWNSTREAM cato
2L	7456178	2L_7456178_SNP [dm3] 2L_7456178_SNP [dm6]	A	G	1.887e^-5	0.614	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA
3R	13765469	3R_13765469_INS [dm3] 3R_17939747_INS [dm6]	G	GCGTTT	1.894e^-5	0.614	INTRON cpo	TF binding site mE1_TFBS_sens
2L	3803633	2L_3803633_SNP [dm3] 2L_3803633_SNP [dm6]	A	C	1.894e^-5	0.614	UTR_5_PRIME Reph DOWNSTREAM CG3921	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2138686	2L_2138686_SNP [dm3] 2L_2138686_SNP [dm6]	A	T	1.944e^-5	0.614	INTRON tho2	TF binding site mE1_TFBS_sens
X	16945768	X_16945768_SNP [dm3] X_17051735_SNP [dm6]	A	T	1.947e^-5	0.614	INTRON CG45002
2R	3860712	2R_3860712_SNP [dm3] 2R_7973207_SNP [dm6]	C	A	2.021e^-5	0.614	DOWNSTREAM ACC INTRON CSN4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8635320	2R_8635320_SNP [dm3] 2R_12747815_SNP [dm6]	A	G	2.027e^-5	0.614	INTRON CG42663
3R	4873535	3R_4873535_DEL [dm3] 3R_9047813_DEL [dm6]	ACTGCT	GG	2.060e^-5	0.614	UTR_5_PRIME Rel UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	4873547	3R_4873547_DEL [dm3] 3R_9047825_DEL [dm6]	AAAAT	GG	2.060e^-5	0.614	UTR_5_PRIME Rel UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	4878256	3R_4878256_SNP [dm3] 3R_9052534_SNP [dm6]	C	G	2.066e^-5	0.614	UTR_5_PRIME Kdm2 UPSTREAM Kdm2 DOWNSTREAM Mst85C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	22638800	3L_22638800_SNP [dm3] 3L_22645700_SNP [dm6]	G	A	2.102e^-5	0.614	UPSTREAM CG33767 INTRON CG33766
2R	8635165	2R_8635165_DEL [dm3] 2R_12747660_DEL [dm6]	TT	T	2.105e^-5	0.614	INTRON CG42663
3L	12010094	3L_12010094_SNP [dm3] 3L_12016994_SNP [dm6]	A	G	2.119e^-5	0.614	INTRON rols
2L	2132433	2L_2132433_SNP [dm3] 2L_2132433_SNP [dm6]	G	T	2.128e^-5	0.614	INTRON GlyP
X	16945769	X_16945769_SNP [dm3] X_17051736_SNP [dm6]	T	C	2.226e^-5	0.614	INTRON CG45002
3L	6880646	3L_6880646_SNP [dm3] 3L_6887546_SNP [dm6]	T	C	2.340e^-5	0.614	INTERGENIC
X	16289991	X_16289991_SNP [dm3] X_16395958_SNP [dm6]	T	A	2.419e^-5	0.614	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
2L	3892732	2L_3892732_SNP [dm3] 2L_3892732_SNP [dm6]	A	T	2.432e^-5	0.614	INTRON capu
2L	8302437	2L_8302437_SNP [dm3] 2L_8302437_SNP [dm6]	A	G	2.434e^-5	0.614	UPSTREAM Scgalpha INTRON wol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	1160441	2L_1160441_SNP [dm3] 2L_1160441_SNP [dm6]	G	A	2.438e^-5	0.614	UTR_3_PRIME CG5080 DOWNSTREAM Tango14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	743993	3L_743993_SNP [dm3] 3L_743993_SNP [dm6]	T	C	2.508e^-5	0.614	UPSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19562746	2R_19562746_SNP [dm3] 2R_23675223_SNP [dm6]	G	C	2.514e^-5	0.614	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7026916	3R_7026916_SNP [dm3] 3R_11201194_SNP [dm6]	G	C	2.528e^-5	0.614	INTRON cu
2L	12892474	2L_12892474_SNP [dm3] 2L_12892474_SNP [dm6]	G	C	2.543e^-5	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7139117	3R_7139117_SNP [dm3] 3R_11313395_SNP [dm6]	T	C	2.578e^-5	0.614	INTERGENIC
2R	10864634	2R_10864634_SNP [dm3] 2R_14977129_SNP [dm6]	G	T	2.584e^-5	0.614	INTRON ckn	TF binding site mE1_TFBS_sens
3L	2796679	3L_2796679_SNP [dm3] 3L_2796679_SNP [dm6]	C	T	2.602e^-5	0.614	SPLICE_SITE_ACCEPTOR CG43444 SPLICE_SITE_REGION CG43444 SYNONYMOUS_CODING CG43444 UTR_5_PRIME CG43444 INTRON CG43444	TF binding site mE1_TFBS_inv
3R	22398899	3R_22398899_SNP [dm3] 3R_26573177_SNP [dm6]	G	C	2.605e^-5	0.614	INTRON scrib
3R	25396049	3R_25396049_SNP [dm3] 3R_29570327_SNP [dm6]	T	G	2.682e^-5	0.614	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8302436	2L_8302436_SNP [dm3] 2L_8302436_SNP [dm6]	A	T	2.694e^-5	0.614	UPSTREAM Scgalpha INTRON wol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	3184743	2L_3184743_SNP [dm3] 2L_3184743_SNP [dm6]	G	A	2.696e^-5	0.614	INTRON CG34393
3R	5830327	3R_5830327_SNP [dm3] 3R_10004605_SNP [dm6]	C	T	2.712e^-5	0.614	INTRON Mical	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	22398852	3R_22398852_SNP [dm3] 3R_26573130_SNP [dm6]	C	A	2.718e^-5	0.614	INTRON scrib
3L	14481679	3L_14481679_SNP [dm3] 3L_14488579_SNP [dm6]	C	A	2.870e^-5	0.638	INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	22747634	3L_22747634_SNP [dm3] 3L_22754534_SNP [dm6]	A	G	2.896e^-5	0.638	INTRON SPoCk
2R	13932152	2R_13932152_SNP [dm3] 2R_18044647_SNP [dm6]	T	G	2.934e^-5	0.638	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
X	9667042	X_9667042_SNP [dm3] X_9773009_SNP [dm6]	G	A	2.958e^-5	0.638	INTERGENIC
3L	9224892	3L_9224892_SNP [dm3] 3L_9231792_SNP [dm6]	C	T	3.026e^-5	0.645	INTERGENIC	TF binding site mE1_TFBS_inv
X	16035506	X_16035506_SNP [dm3] X_16141473_SNP [dm6]	A	G	3.059e^-5	0.645	INTRON disco-r
3R	14814703	3R_14814703_SNP [dm3] 3R_18988981_SNP [dm6]	G	T	3.169e^-5	0.66	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	10048831	3L_10048831_SNP [dm3] 3L_10055731_SNP [dm6]	T	G	3.216e^-5	0.663	INTRON dpr6
3L	11653081	3L_11653081_DEL [dm3] 3L_11659981_DEL [dm6]	AGAGAAGACTGTTTGATTAG...	A	3.299e^-5	0.669	INTRON CG32085
2R	4921546	2R_4921546_SNP [dm3] 2R_9034041_SNP [dm6]	G	A	3.345e^-5	0.669	INTERGENIC
2L	15467647	2L_15467647_SNP [dm3] 2L_15467647_SNP [dm6]	A	C	3.385e^-5	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4876246	3R_4876246_SNP [dm3] 3R_9050524_SNP [dm6]	G	A	3.389e^-5	0.669	UTR_5_PRIME Nmdmc UPSTREAM Mst85C INTRON Mst85C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	13848060	X_13848060_SNP [dm3] X_13954027_SNP [dm6]	T	C	3.429e^-5	0.67	INTRON mamo	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	9308286	X_9308286_INS [dm3] X_9414253_INS [dm6]	A	AAGAATGA	3.533e^-5	0.675	INTRON mgl
2L	11338401	2L_11338401_SNP [dm3] 2L_11338401_SNP [dm6]	T	C	3.552e^-5	0.675	DOWNSTREAM CR44585 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	18911646	2L_18911646_SNP [dm3] 2L_18911646_SNP [dm6]	A	G	3.596e^-5	0.675	INTERGENIC
3R	25395957	3R_25395957_INS [dm3] 3R_29570235_INS [dm6]	G	GGTGTTGCTGTTGTTGCTG...	3.634e^-5	0.675	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	22703464	3L_22703464_SNP [dm3] 3L_22710364_SNP [dm6]	C	G	3.662e^-5	0.675	INTERGENIC
2L	2164375	2L_2164375_SNP [dm3] 2L_2164375_SNP [dm6]	C	T	3.683e^-5	0.675	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	10946644	2R_10946644_SNP [dm3] 2R_15059139_SNP [dm6]	A	C	3.708e^-5	0.675	INTERGENIC	TF binding site mE1_TFBS_sens
2R	12809928	2R_12809928_SNP [dm3] 2R_16922423_SNP [dm6]	C	A	3.904e^-5	0.678	INTERGENIC
2R	14536889	2R_14536889_SNP [dm3] 2R_18649384_SNP [dm6]	A	T	3.997e^-5	0.678	INTRON SP2637
2L	3803926	2L_3803926_SNP [dm3] 2L_3803926_SNP [dm6]	A	G	3.998e^-5	0.678	INTRON Reph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12002657	3L_12002657_SNP [dm3] 3L_12009557_SNP [dm6]	A	G	4.031e^-5	0.678	SYNONYMOUS_CODING rols	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	7457305	2L_7457305_SNP [dm3] 2L_7457305_SNP [dm6]	A	G	4.045e^-5	0.678	SYNONYMOUS_CODING Gr28b UPSTREAM Gr28b INTRON Gr28b
3R	24013681	3R_24013681_SNP [dm3] 3R_28187959_SNP [dm6]	C	T	4.045e^-5	0.678	INTRON CG34354	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14433549	3L_14433549_SNP [dm3] 3L_14440449_SNP [dm6]	G	A	4.062e^-5	0.678	INTRON bbg
2R	5630572	2R_5630572_INS [dm3] 2R_9743067_INS [dm6]	A	AGTTCAAA	4.080e^-5	0.678	INTRON sqa
3L	10486069	3L_10486069_SNP [dm3] 3L_10492969_SNP [dm6]	C	G	4.141e^-5	0.678	DOWNSTREAM S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13765188	3R_13765188_SNP [dm3] 3R_17939466_SNP [dm6]	G	T	4.194e^-5	0.678	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4369813	3L_4369813_SNP [dm3] 3L_4369813_SNP [dm6]	T	G	4.212e^-5	0.678	INTRON DopEcR
3L	16406921	3L_16406921_SNP [dm3] 3L_16413821_SNP [dm6]	C	G	4.220e^-5	0.678	INTRON TMS1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2628005	X_2628005_SNP [dm3] X_2733972_SNP [dm6]	C	T	4.278e^-5	0.678	SYNONYMOUS_CODING CG2712 DOWNSTREAM crm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3892790	2L_3892790_SNP [dm3] 2L_3892790_SNP [dm6]	C	T	4.373e^-5	0.678	INTRON capu
2L	3152974	2L_3152974_SNP [dm3] 2L_3152974_SNP [dm6]	C	T	4.425e^-5	0.678	UPSTREAM Mad INTRON Mad	TF binding site BDTNP1_TFBS_dl
2R	8612602	2R_8612602_SNP [dm3] 2R_12725097_SNP [dm6]	A	C	4.441e^-5	0.678	INTRON CG42663
3R	4888222	3R_4888222_SNP [dm3] 3R_9062500_SNP [dm6]	T	A	4.465e^-5	0.678	UTR_3_PRIME Kdm2 DOWNSTREAM beag
2R	12164424	2R_12164424_SNP [dm3] 2R_16276919_SNP [dm6]	A	G	4.491e^-5	0.678	SYNONYMOUS_CODING CG33017 UTR_3_PRIME CG33017 DOWNSTREAM cato
3R	4883910	3R_4883910_SNP [dm3] 3R_9058188_SNP [dm6]	T	C	4.515e^-5	0.678	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2796907	3L_2796907_SNP [dm3] 3L_2796907_SNP [dm6]	C	T	4.599e^-5	0.678	INTRON CG43444	TF binding site mE1_TFBS_inv
2L	5677243	2L_5677243_SNP [dm3] 2L_5677243_SNP [dm6]	A	G	4.619e^-5	0.678	INTERGENIC
2L	14426096	2L_14426096_SNP [dm3] 2L_14426096_SNP [dm6]	G	A	4.647e^-5	0.678	UPSTREAM Cpr35B INTERGENIC
2R	20561378	2R_20561378_SNP [dm3] 2R_24673855_SNP [dm6]	T	A	4.707e^-5	0.678	DOWNSTREAM Mmp1 INTRON Mmp1
3R	10828808	3R_10828808_SNP [dm3] 3R_15003086_SNP [dm6]	G	A	4.838e^-5	0.678	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7969877	2L_7969877_SNP [dm3] 2L_7969877_SNP [dm6]	A	G	4.879e^-5	0.678	INTRON Snoo
3L	6893969	3L_6893969_SNP [dm3] 3L_6900869_SNP [dm6]	A	T	4.887e^-5	0.678	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	1340083	3L_1340083_SNP [dm3] 3L_1340083_SNP [dm6]	T	G	4.889e^-5	0.678	SYNONYMOUS_CODING CG2199 DOWNSTREAM l_3_02640	TF binding site mE1_TFBS_HSA
3L	5645300	3L_5645300_SNP [dm3] 3L_5652200_SNP [dm6]	C	T	4.889e^-5	0.678	DOWNSTREAM Blimp-1 INTERGENIC
X	6520200	X_6520200_SNP [dm3] X_6626167_SNP [dm6]	G	A	4.892e^-5	0.678	INTRON pigs
3L	21735600	3L_21735600_SNP [dm3] 3L_21742500_SNP [dm6]	G	A	4.929e^-5	0.678	DOWNSTREAM CG14565 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3R	5977202	3R_5977202_SNP [dm3] 3R_10151480_SNP [dm6]	C	A	4.984e^-5	0.678	SYNONYMOUS_CODING CG34303 INTRON Invadolysin
3L	19573007	3L_19573007_SNP [dm3] 3L_19579907_SNP [dm6]	T	A	5.024e^-5	0.678	INTRON Shal
3L	6531108	3L_6531108_DEL [dm3] 3L_6538008_DEL [dm6]	GG	G	5.057e^-5	0.678	INTRON sfl
3R	15751626	3R_15751626_SNP [dm3] 3R_19925904_SNP [dm6]	A	T	5.078e^-5	0.678	UPSTREAM CG4462 DOWNSTREAM CG4459 INTERGENIC
2R	17186713	2R_17186713_SNP [dm3] 2R_21299208_SNP [dm6]	G	A	5.113e^-5	0.678	UPSTREAM CG42672 & 1 other INTRON CG42672
3R	4884006	3R_4884006_SNP [dm3] 3R_9058284_SNP [dm6]	G	T	5.193e^-5	0.678	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25396307	3R_25396307_SNP [dm3] 3R_29570585_SNP [dm6]	T	C	5.247e^-5	0.678	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10486133	3L_10486133_SNP [dm3] 3L_10493033_SNP [dm6]	T	C	5.252e^-5	0.678	DOWNSTREAM S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	19563592	3L_19563592_SNP [dm3] 3L_19570492_SNP [dm6]	T	G	5.256e^-5	0.678	INTRON Shal	TF binding site mE1_TFBS_cad
2R	19563257	2R_19563257_SNP [dm3] 2R_23675734_SNP [dm6]	C	A	5.404e^-5	0.678	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14992649	3R_14992649_SNP [dm3] 3R_19166927_SNP [dm6]	A	G	5.415e^-5	0.678	INTRON sqz	TF binding site BDTNP1_TFBS_dl
3R	20991232	3R_20991232_DEL [dm3] 3R_25165510_DEL [dm6]	AT	A	5.432e^-5	0.678	INTERGENIC
2R	13119444	2R_13119444_DEL [dm3] 2R_17231939_DEL [dm6]	TGTTTTTTAT	T	5.472e^-5	0.678	INTRON mbl
3R	25396050	3R_25396050_SNP [dm3] 3R_29570328_SNP [dm6]	G	T	5.476e^-5	0.678	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5645299	3L_5645299_SNP [dm3] 3L_5652199_SNP [dm6]	G	T	5.547e^-5	0.678	DOWNSTREAM Blimp-1 INTERGENIC
X	17237756	X_17237756_SNP [dm3] X_17343723_SNP [dm6]	A	T	5.559e^-5	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15466119	3R_15466119_SNP [dm3] 3R_19640397_SNP [dm6]	C	T	5.562e^-5	0.678	INTRON subdued
X	11308661	X_11308661_SNP [dm3] X_11414628_SNP [dm6]	C	A	5.583e^-5	0.678	SYNONYMOUS_CODING Gr10a DOWNSTREAM Or10a	TF binding site BDTNP1_TFBS_da
3L	11653159	3L_11653159_SNP [dm3] 3L_11660059_SNP [dm6]	C	T	5.591e^-5	0.678	INTRON CG32085
3L	4684748	3L_4684748_SNP [dm3] 3L_4684748_SNP [dm6]	A	G	5.623e^-5	0.678	INTRON axo
3L	11653123	3L_11653123_SNP [dm3] 3L_11660023_SNP [dm6]	A	C	5.764e^-5	0.678	INTRON CG32085
3L	11653145	3L_11653145_SNP [dm3] 3L_11660045_SNP [dm6]	T	A	5.821e^-5	0.678	INTRON CG32085
2R	14313870	2R_14313870_SNP [dm3] 2R_18426365_SNP [dm6]	A	T	5.880e^-5	0.678	UPSTREAM CG12263 DOWNSTREAM CG5174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
X	2445054	X_2445054_SNP [dm3] X_2551021_SNP [dm6]	A	T	5.939e^-5	0.678	INTERGENIC
3R	10166268	3R_10166268_SNP [dm3] 3R_14340546_SNP [dm6]	C	A	6.032e^-5	0.678	INTRON NK7.1
3L	6895881	3L_6895881_SNP [dm3] 3L_6902781_SNP [dm6]	G	A	6.107e^-5	0.678	INTERGENIC
2L	2466652	2L_2466652_SNP [dm3] 2L_2466652_SNP [dm6]	G	T	6.202e^-5	0.678	INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	16166257	2L_16166257_SNP [dm3] 2L_16166257_SNP [dm6]	G	T	6.204e^-5	0.678	UTR_5_PRIME Ca-alpha1D
3R	7138372	3R_7138372_SNP [dm3] 3R_11312650_SNP [dm6]	C	T	6.237e^-5	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8640883	2R_8640883_SNP [dm3] 2R_12753378_SNP [dm6]	G	T	6.276e^-5	0.678	UPSTREAM mos INTRON Taz	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	4888240	3R_4888240_SNP [dm3] 3R_9062518_SNP [dm6]	G	A	6.283e^-5	0.678	UTR_3_PRIME Kdm2 DOWNSTREAM beag
X	18372601	X_18372601_INS [dm3] X_18478568_INS [dm6]	A	ACCATTTCA	6.309e^-5	0.678	INTRON CG32547
3R	11887921	3R_11887921_SNP [dm3] 3R_16062199_SNP [dm6]	T	G	6.314e^-5	0.678	SYNONYMOUS_CODING CG10185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14744929	2R_14744929_SNP [dm3] 2R_18857424_SNP [dm6]	G	T	6.392e^-5	0.678	INTRON Jheh2
3R	15466122	3R_15466122_SNP [dm3] 3R_19640400_SNP [dm6]	T	A	6.399e^-5	0.678	INTRON subdued
3R	13488678	3R_13488678_SNP [dm3] 3R_17662956_SNP [dm6]	C	A	6.436e^-5	0.678	SYNONYMOUS_CODING CG14322
3R	17846407	3R_17846407_SNP [dm3] 3R_22020685_SNP [dm6]	A	T	6.440e^-5	0.678	INTRON CG6455	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3R	7777492	3R_7777492_SNP [dm3] 3R_11951770_SNP [dm6]	G	A	6.454e^-5	0.678	SYNONYMOUS_CODING CG31211	TF binding site mE1_TFBS_cad
3L	13241256	3L_13241256_SNP [dm3] 3L_13248156_SNP [dm6]	C	T	6.482e^-5	0.678	SYNONYMOUS_CODING CG32119 INTRON caps
3R	14992632	3R_14992632_SNP [dm3] 3R_19166910_SNP [dm6]	G	A	6.505e^-5	0.678	INTRON sqz	TF binding site BDTNP1_TFBS_dl
X	8075629	X_8075629_SNP [dm3] X_8181596_SNP [dm6]	A	T	6.509e^-5	0.678	INTRON sdt
X	10782832	X_10782832_SNP [dm3] X_10888799_SNP [dm6]	T	G	6.513e^-5	0.678	INTRON Ork1
3L	21726932	3L_21726932_SNP [dm3] 3L_21733832_SNP [dm6]	C	T	6.534e^-5	0.678	UPSTREAM CG14573 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	11943317	2L_11943317_SNP [dm3] 2L_11943317_SNP [dm6]	G	T	6.603e^-5	0.678	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
3R	7138419	3R_7138419_DEL [dm3] 3R_11312697_DEL [dm6]	TTTT	G	6.604e^-5	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7457303	2L_7457303_SNP [dm3] 2L_7457303_SNP [dm6]	C	G	6.606e^-5	0.678	NON_SYNONYMOUS_CODING Gr28b UPSTREAM Gr28b INTRON Gr28b
X	18062295	X_18062295_SNP [dm3] X_18168262_SNP [dm6]	C	T	6.659e^-5	0.678	INTRON Frq1
3L	15042229	3L_15042229_DEL [dm3] 3L_15049129_DEL [dm6]	AA	A	6.706e^-5	0.678	DOWNSTREAM CG43678 & 1 other INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi
X	16902739	X_16902739_SNP [dm3] X_17008706_SNP [dm6]	G	A	6.726e^-5	0.678	INTRON CG45002
3L	19284303	3L_19284303_SNP [dm3] 3L_19291203_SNP [dm6]	T	A	6.777e^-5	0.678	INTRON Gbs-76A
X	18372588	X_18372588_SNP [dm3] X_18478555_SNP [dm6]	T	A	6.780e^-5	0.678	INTRON CG32547
X	4620839	X_4620839_SNP [dm3] X_4726806_SNP [dm6]	A	T	6.833e^-5	0.678	INTRON Proc-R	TF binding site mE1_TFBS_chinmo
X	4620840	X_4620840_SNP [dm3] X_4726807_SNP [dm6]	G	T	6.833e^-5	0.678	INTRON Proc-R	TF binding site mE1_TFBS_chinmo
X	18062091	X_18062091_SNP [dm3] X_18168058_SNP [dm6]	T	A	6.987e^-5	0.678	INTRON Frq1
3L	15235046	3L_15235046_SNP [dm3] 3L_15241946_SNP [dm6]	G	A	7.027e^-5	0.678	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	22058067	X_22058067_SNP [dm3] X_22656231_SNP [dm6]	G	T	7.146e^-5	0.678	INTERGENIC
3L	10019827	3L_10019827_SNP [dm3] 3L_10026727_SNP [dm6]	T	C	7.177e^-5	0.678	INTRON dpr6
2L	5471576	2L_5471576_SNP [dm3] 2L_5471576_SNP [dm6]	G	A	7.198e^-5	0.678	INTERGENIC
3L	20654577	3L_20654577_SNP [dm3] 3L_20661477_SNP [dm6]	G	A	7.211e^-5	0.678	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	12907198	2L_12907198_SNP [dm3] 2L_12907198_SNP [dm6]	T	C	7.212e^-5	0.678	INTERGENIC
2R	17422032	2R_17422032_SNP [dm3] 2R_21534527_SNP [dm6]	T	A	7.265e^-5	0.678	INTRON Egfr	TF binding site BDTNP1_TFBS_prd
3R	25396056	3R_25396056_SNP [dm3] 3R_29570334_SNP [dm6]	G	T	7.275e^-5	0.678	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11653153	3L_11653153_DEL [dm3] 3L_11660053_DEL [dm6]	ATA	T	7.289e^-5	0.678	INTRON CG32085
3R	25901689	3R_25901689_SNP [dm3] 3R_30075967_SNP [dm6]	G	T	7.323e^-5	0.678	INTRON sima
3R	4856287	3R_4856287_SNP [dm3] 3R_9030565_SNP [dm6]	A	T	7.329e^-5	0.678	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5021092	2L_5021092_SNP [dm3] 2L_5021092_SNP [dm6]	T	G	7.416e^-5	0.678	INTRON vkg
3R	11925353	3R_11925353_SNP [dm3] 3R_16099631_SNP [dm6]	A	T	7.417e^-5	0.678	UTR_5_PRIME Akt1 UPSTREAM Mhcl INTRON Akt1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3R	1592862	3R_1592862_SNP [dm3] 3R_5767140_SNP [dm6]	G	A	7.425e^-5	0.678	INTRON CG2082	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2086604	3L_2086604_SNP [dm3] 3L_2086604_SNP [dm6]	C	T	7.458e^-5	0.678	SYNONYMOUS_CODING sls INTRON sls
2R	8654878	2R_8654878_SNP [dm3] 2R_12767373_SNP [dm6]	C	T	7.559e^-5	0.678	INTERGENIC
3L	19563618	3L_19563618_SNP [dm3] 3L_19570518_SNP [dm6]	A	T	7.578e^-5	0.678	INTRON Shal	TF binding site mE1_TFBS_cad
2R	8654874	2R_8654874_SNP [dm3] 2R_12767369_SNP [dm6]	G	A	7.586e^-5	0.678	INTERGENIC
2L	10150491	2L_10150491_SNP [dm3] 2L_10150491_SNP [dm6]	A	G	7.591e^-5	0.678	INTRON CG44153 & 1 other
3R	4986693	3R_4986693_SNP [dm3] 3R_9160971_SNP [dm6]	T	G	7.613e^-5	0.678	INTRON pum
3R	10136163	3R_10136163_SNP [dm3] 3R_14310441_SNP [dm6]	C	T	7.618e^-5	0.678	UTR_5_PRIME CG31321 DOWNSTREAM RpII15
2L	15467619	2L_15467619_SNP [dm3] 2L_15467619_SNP [dm6]	A	G	7.625e^-5	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10122995	3R_10122995_SNP [dm3] 3R_14297273_SNP [dm6]	C	A	7.682e^-5	0.678	UPSTREAM CG12207 INTRON CG12207
2L	5589363	2L_5589363_SNP [dm3] 2L_5589363_SNP [dm6]	A	G	7.749e^-5	0.678	UPSTREAM CG7251 INTERGENIC
2L	16408692	2L_16408692_SNP [dm3] 2L_16408692_SNP [dm6]	G	T	7.754e^-5	0.678	INTRON CG5888
3R	23477119	3R_23477119_SNP [dm3] 3R_27651397_SNP [dm6]	G	C	7.839e^-5	0.678	UTR_3_PRIME tau UPSTREAM tau INTRON tau
2L	3892632	2L_3892632_SNP [dm3] 2L_3892632_SNP [dm6]	G	T	7.912e^-5	0.678	INTRON capu
2L	15641944	2L_15641944_SNP [dm3] 2L_15641944_SNP [dm6]	G	A	7.973e^-5	0.678	INTERGENIC
X	12400134	X_12400134_SNP [dm3] X_12506101_SNP [dm6]	C	T	7.974e^-5	0.678	INTRON CG2556
2L	11733958	2L_11733958_SNP [dm3] 2L_11733958_SNP [dm6]	T	G	7.994e^-5	0.678	INTERGENIC
2L	14140709	2L_14140709_SNP [dm3] 2L_14140709_SNP [dm6]	T	A	8.021e^-5	0.678	INTRON CG17341
3R	6583251	3R_6583251_SNP [dm3] 3R_10757529_SNP [dm6]	A	G	8.023e^-5	0.678	NON_SYNONYMOUS_CODING CG31272 EXON CR45015
3R	11887639	3R_11887639_SNP [dm3] 3R_16061917_SNP [dm6]	G	A	8.041e^-5	0.678	SYNONYMOUS_CODING CG10185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22664196	3L_22664196_DEL [dm3] 3L_22671096_DEL [dm6]	CAATCTCTGGAAAGC...	C	8.067e^-5	0.678	INTRON CG14457
3L	18836900	3L_18836900_SNP [dm3] 3L_18843800_SNP [dm6]	G	A	8.146e^-5	0.678	INTRON Indy
X	2628002	X_2628002_SNP [dm3] X_2733969_SNP [dm6]	G	A	8.156e^-5	0.678	SYNONYMOUS_CODING CG2712 DOWNSTREAM crm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1956520	3R_1956520_SNP [dm3] 3R_6130798_SNP [dm6]	T	C	8.249e^-5	0.678	INTERGENIC
3R	25901933	3R_25901933_SNP [dm3] 3R_30076211_SNP [dm6]	A	T	8.256e^-5	0.678	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1724069	3L_1724069_SNP [dm3] 3L_1724069_SNP [dm6]	G	C	8.389e^-5	0.678	SYNONYMOUS_CODING drpr UPSTREAM CG18171 & 1 other
3L	11652837	3L_11652837_SNP [dm3] 3L_11659737_SNP [dm6]	G	A	8.453e^-5	0.678	INTRON CG32085
X	4620858	X_4620858_SNP [dm3] X_4726825_SNP [dm6]	T	A	8.508e^-5	0.678	INTRON Proc-R	TF binding site mE1_TFBS_chinmo
2L	15093259	2L_15093259_SNP [dm3] 2L_15093259_SNP [dm6]	C	A	8.598e^-5	0.678	INTRON CG15270
3L	6903238	3L_6903238_SNP [dm3] 3L_6910138_SNP [dm6]	T	C	8.602e^-5	0.678	INTERGENIC
3R	10015958	3R_10015958_SNP [dm3] 3R_14190236_SNP [dm6]	G	A	8.688e^-5	0.678	INTRON Dop1R1
3R	14992578	3R_14992578_DEL [dm3] 3R_19166856_DEL [dm6]	GTTTGCATGAATG...	G	8.720e^-5	0.678	INTRON sqz	TF binding site BDTNP1_TFBS_dl
3R	11921309	3R_11921309_SNP [dm3] 3R_16095587_SNP [dm6]	A	C	8.730e^-5	0.678	INTRON Mhcl
3R	13869800	3R_13869800_SNP [dm3] 3R_18044078_SNP [dm6]	G	T	8.830e^-5	0.678	INTERGENIC
X	8075652	X_8075652_SNP [dm3] X_8181619_SNP [dm6]	G	A	8.868e^-5	0.678	INTRON sdt
3L	9027768	3L_9027768_SNP [dm3] 3L_9034668_SNP [dm6]	C	T	9.027e^-5	0.678	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3892660	2L_3892660_SNP [dm3] 2L_3892660_SNP [dm6]	T	G	9.030e^-5	0.678	INTRON capu
X	12200536	X_12200536_SNP [dm3] X_12306503_SNP [dm6]	G	T	9.031e^-5	0.678	INTRON Ten-a
2L	11249482	2L_11249482_SNP [dm3] 2L_11249482_SNP [dm6]	A	G	9.040e^-5	0.678	INTRON ab
2L	2122814	2L_2122814_SNP [dm3] 2L_2122814_SNP [dm6]	C	T	9.042e^-5	0.678	INTERGENIC
3R	4692925	3R_4692925_SNP [dm3] 3R_8867203_SNP [dm6]	T	G	9.118e^-5	0.678	INTRON pyd
2L	16582252	2L_16582252_SNP [dm3] 2L_16582252_SNP [dm6]	G	C	9.264e^-5	0.678	INTRON CG42389	TF binding site mE1_TFBS_bab1
2L	6980583	2L_6980583_SNP [dm3] 2L_6980583_SNP [dm6]	T	G	9.276e^-5	0.678	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5645294	3L_5645294_INS [dm3] 3L_5652194_INS [dm6]	GA	ATC	9.440e^-5	0.678	DOWNSTREAM Blimp-1 INTERGENIC
3L	7489481	3L_7489481_DEL [dm3] 3L_7496381_DEL [dm6]	TT	T	9.519e^-5	0.678	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
2L	12892832	2L_12892832_SNP [dm3] 2L_12892832_SNP [dm6]	C	T	9.521e^-5	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6821419	3L_6821419_SNP [dm3] 3L_6828319_SNP [dm6]	G	T	9.525e^-5	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4749928	2L_4749928_INS [dm3] 2L_4749928_INS [dm6]	T	TGTGCAT	9.531e^-5	0.678	INTRON CG15630
3L	19937743	3L_19937743_DEL [dm3] 3L_19944643_DEL [dm6]	AAAAT	A	9.585e^-5	0.678	INTRON Ac76E
2R	15482141	2R_15482141_SNP [dm3] 2R_19594636_SNP [dm6]	T	A	9.647e^-5	0.678	SPLICE_SITE_REGION CG16716 INTRON sm & 1 other
3R	5651260	3R_5651260_SNP [dm3] 3R_9825538_SNP [dm6]	A	T	9.669e^-5	0.678	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	25514121	3R_25514121_SNP [dm3] 3R_29688399_SNP [dm6]	C	T	9.757e^-5	0.678	INTRON Obp99c
3R	26295253	3R_26295253_SNP [dm3] 3R_30469531_SNP [dm6]	T	C	9.857e^-5	0.678	INTRON PH4alphaEFB
3L	6893992	3L_6893992_SNP [dm3] 3L_6900892_SNP [dm6]	G	T	9.873e^-5	0.678	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	1403704	3L_1403704_SNP [dm3] 3L_1403704_SNP [dm6]	C	A	9.874e^-5	0.678	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3L	6903611	3L_6903611_SNP [dm3] 3L_6910511_SNP [dm6]	T	A	9.886e^-5	0.678	INTERGENIC
X	8155102	X_8155102_SNP [dm3] X_8261069_SNP [dm6]	C	A	9.893e^-5	0.678	INTRON CG1632
3L	20439622	3L_20439622_SNP [dm3] 3L_20446522_SNP [dm6]	T	A	9.897e^-5	0.678	INTRON CG5910
3R	15044818	3R_15044818_SNP [dm3] 3R_19219096_SNP [dm6]	G	A	9.935e^-5	0.678	INTRON vib
3L	21722282	3L_21722282_SNP [dm3] 3L_21729182_SNP [dm6]	T	A	9.946e^-5	0.678	UPSTREAM CG11247 DOWNSTREAM CG14570 INTRON Rpb8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
2L	3892733	2L_3892733_SNP [dm3] 2L_3892733_SNP [dm6]	T	A	9.968e^-5	0.678	INTRON capu
3L	2659766	3L_2659766_SNP [dm3] 3L_2659766_SNP [dm6]	G	A	9.976e^-5	0.678	INTRON Fife & 1 other
3R	11883859	3R_11883859_SNP [dm3] 3R_16058137_SNP [dm6]	C	A	1.007e^-4	0.678	SYNONYMOUS_CODING msps
2L	11190970	2L_11190970_SNP [dm3] 2L_11190970_SNP [dm6]	T	C	1.009e^-4	0.678	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	16375748	2L_16375748_SNP [dm3] 2L_16375748_SNP [dm6]	A	T	1.012e^-4	0.678	INTERGENIC
3L	11668654	3L_11668654_SNP [dm3] 3L_11675554_SNP [dm6]	C	T	1.019e^-4	0.678	UTR_5_PRIME CG32085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18696132	2L_18696132_SNP [dm3] 2L_18696132_SNP [dm6]	C	T	1.021e^-4	0.678	UTR_5_PRIME CG10338 UPSTREAM CG10383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	4986665	3R_4986665_SNP [dm3] 3R_9160943_SNP [dm6]	C	T	1.023e^-4	0.678	INTRON pum	TF binding site mE1_TFBS_Trl
3R	15045295	3R_15045295_SNP [dm3] 3R_19219573_SNP [dm6]	T	A	1.026e^-4	0.678	INTRON vib
2L	12668701	2L_12668701_SNP [dm3] 2L_12668701_SNP [dm6]	G	A	1.028e^-4	0.678	NON_SYNONYMOUS_CODING CG15485 INTRON pdm2
3L	6888149	3L_6888149_SNP [dm3] 3L_6895049_SNP [dm6]	G	T	1.036e^-4	0.678	INTERGENIC
2L	518977	2L_518977_SNP [dm3] 2L_518977_SNP [dm6]	A	G	1.056e^-4	0.678	INTRON ush	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16173571	3R_16173571_SNP [dm3] 3R_20347849_SNP [dm6]	T	A	1.059e^-4	0.678	INTERGENIC
3L	19572563	3L_19572563_SNP [dm3] 3L_19579463_SNP [dm6]	C	G	1.060e^-4	0.678	INTRON Shal
3L	3090763	3L_3090763_SNP [dm3] 3L_3090763_SNP [dm6]	T	C	1.060e^-4	0.678	UPSTREAM snRNA:U5:63BC DOWNSTREAM Cht7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	4761281	X_4761281_SNP [dm3] X_4867248_SNP [dm6]	G	T	1.069e^-4	0.678	INTRON CG42594
2L	16529919	2L_16529919_SNP [dm3] 2L_16529919_SNP [dm6]	A	G	1.083e^-4	0.678	UPSTREAM snoRNA:Me28S-C1237 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3L	6902212	3L_6902212_SNP [dm3] 3L_6909112_SNP [dm6]	G	T	1.083e^-4	0.678	INTERGENIC
3R	7137905	3R_7137905_SNP [dm3] 3R_11312183_SNP [dm6]	T	A	1.096e^-4	0.678	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	1956565	3R_1956565_SNP [dm3] 3R_6130843_SNP [dm6]	T	A	1.097e^-4	0.678	INTERGENIC
2R	14623469	2R_14623469_SNP [dm3] 2R_18735964_SNP [dm6]	T	G	1.098e^-4	0.678	INTRON Hs3st-A
3R	1970736	3R_1970736_SNP [dm3] 3R_6145014_SNP [dm6]	A	G	1.098e^-4	0.678	INTERGENIC
X	4620423	X_4620423_SNP [dm3] X_4726390_SNP [dm6]	C	G	1.100e^-4	0.678	INTRON Proc-R	TF binding site mE1_TFBS_chinmo
3R	4774116	3R_4774116_SNP [dm3] 3R_8948394_SNP [dm6]	G	A	1.104e^-4	0.678	INTERGENIC
X	4620823	X_4620823_DEL [dm3] X_4726790_DEL [dm6]	GCATTGAAAAG...	G	1.109e^-4	0.678	INTRON Proc-R	TF binding site mE1_TFBS_chinmo
2R	10868334	2R_10868334_SNP [dm3] 2R_14980829_SNP [dm6]	G	T	1.111e^-4	0.678	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3L	6567577	3L_6567577_SNP [dm3] 3L_6574477_SNP [dm6]	T	C	1.112e^-4	0.678	INTRON CG18769 & 1 other
2L	2252975	2L_2252975_SNP [dm3] 2L_2252975_SNP [dm6]	A	C	1.115e^-4	0.678	UPSTREAM CG17234 & 1 other INTERGENIC
3R	7796214	3R_7796214_SNP [dm3] 3R_11970492_SNP [dm6]	A	G	1.116e^-4	0.678	SYNONYMOUS_CODING GC1
3R	10838982	3R_10838982_DEL [dm3] 3R_15013260_DEL [dm6]	CC	C	1.124e^-4	0.678	INTERGENIC
X	17025221	X_17025221_SNP [dm3] X_17131188_SNP [dm6]	A	T	1.130e^-4	0.678	INTRON CG5004
2L	13449203	2L_13449203_SNP [dm3] 2L_13449203_SNP [dm6]	C	T	1.130e^-4	0.678	SYNONYMOUS_CODING Hsp60D INTRON CG42784	TF binding site BDTNP1_TFBS_sna
2L	11633126	2L_11633126_SNP [dm3] 2L_11633126_SNP [dm6]	C	T	1.130e^-4	0.678	INTERGENIC
3L	11652841	3L_11652841_SNP [dm3] 3L_11659741_SNP [dm6]	A	G	1.133e^-4	0.678	INTRON CG32085
2L	3804278	2L_3804278_SNP [dm3] 2L_3804278_SNP [dm6]	G	C	1.134e^-4	0.678	INTRON Reph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	4851359	3R_4851359_SNP [dm3] 3R_9025637_SNP [dm6]	T	C	1.135e^-4	0.678	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7050710	3R_7050710_SNP [dm3] 3R_11224988_SNP [dm6]	T	A	1.140e^-4	0.678	UTR_3_PRIME RpL3 UPSTREAM scpr-C DOWNSTREAM snoRNA:Me28S-G2017 & 1 other
3R	25396143	3R_25396143_SNP [dm3] 3R_29570421_SNP [dm6]	G	A	1.143e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	12532517	3R_12532517_SNP [dm3] 3R_16706795_SNP [dm6]	G	T	1.146e^-4	0.678	INTRON Ubx	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13747042	3R_13747042_SNP [dm3] 3R_17921320_SNP [dm6]	C	A	1.164e^-4	0.678	UTR_5_PRIME cpo
3R	18869010	3R_18869010_SNP [dm3] 3R_23043288_SNP [dm6]	T	G	1.165e^-4	0.678	UPSTREAM CG13837 DOWNSTREAM CG13838 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11382927	2L_11382927_SNP [dm3] 2L_11382927_SNP [dm6]	T	A	1.168e^-4	0.678	INTERGENIC	regulatory region REDfly_CRMs
2R	18408832	2R_18408832_SNP [dm3] 2R_22521327_SNP [dm6]	C	A	1.170e^-4	0.678	INTRON px	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	13093889	3R_13093889_SNP [dm3] 3R_17268167_SNP [dm6]	G	A	1.172e^-4	0.678	INTERGENIC
3L	284897	3L_284897_SNP [dm3] 3L_284897_SNP [dm6]	T	C	1.174e^-4	0.678	INTRON RhoGEF3
3L	21719538	3L_21719538_SNP [dm3] 3L_21726438_SNP [dm6]	C	G	1.174e^-4	0.678	NON_SYNONYMOUS_CODING CG11247 UTR_5_PRIME CG11247	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2256555	2L_2256555_SNP [dm3] 2L_2256555_SNP [dm6]	C	G	1.176e^-4	0.678	INTERGENIC
2R	8534715	2R_8534715_SNP [dm3] 2R_12647210_SNP [dm6]	A	G	1.176e^-4	0.678	INTRON CG8785
X	8075644	X_8075644_SNP [dm3] X_8181611_SNP [dm6]	G	A	1.185e^-4	0.678	INTRON sdt
X	14993157	X_14993157_SNP [dm3] X_15099124_SNP [dm6]	T	A	1.187e^-4	0.678	INTRON Rab3-GEF
3L	4015179	3L_4015179_SNP [dm3] 3L_4015179_SNP [dm6]	T	C	1.194e^-4	0.678	INTERGENIC	regulatory region REDfly_CRMs
2L	15863957	2L_15863957_SNP [dm3] 2L_15863957_SNP [dm6]	G	C	1.201e^-4	0.678	DOWNSTREAM CR42791 & 1 other INTERGENIC
3L	1750367	3L_1750367_SNP [dm3] 3L_1750367_SNP [dm6]	A	G	1.203e^-4	0.678	SYNONYMOUS_CODING CG13921	TF binding site mE1_TFBS_chinmo
3R	24697851	3R_24697851_SNP [dm3] 3R_28872129_SNP [dm6]	T	C	1.204e^-4	0.678	UPSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3565454	2R_3565454_SNP [dm3] 2R_7677949_SNP [dm6]	C	G	1.205e^-4	0.678	UTR_3_PRIME CG1399 INTRON CG1399	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14945061	3R_14945061_SNP [dm3] 3R_19119339_SNP [dm6]	G	A	1.205e^-4	0.678	INTRON CG6040
2R	7966488	2R_7966488_SNP [dm3] 2R_12078983_SNP [dm6]	G	A	1.205e^-4	0.678	INTRON CG8888
2L	14390327	2L_14390327_SNP [dm3] 2L_14390327_SNP [dm6]	T	C	1.212e^-4	0.678	DOWNSTREAM elB INTERGENIC
3L	5645290	3L_5645290_SNP [dm3] 3L_5652190_SNP [dm6]	A	T	1.220e^-4	0.678	DOWNSTREAM Blimp-1 INTERGENIC
3R	7121612	3R_7121612_SNP [dm3] 3R_11295890_SNP [dm6]	T	A	1.225e^-4	0.678	INTRON CR31386	TF binding site mE1_TFBS_inv
2R	10868346	2R_10868346_SNP [dm3] 2R_14980841_SNP [dm6]	A	G	1.226e^-4	0.678	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
2R	10868347	2R_10868347_SNP [dm3] 2R_14980842_SNP [dm6]	C	T	1.226e^-4	0.678	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3L	1422679	3L_1422679_SNP [dm3] 3L_1422679_SNP [dm6]	C	A	1.236e^-4	0.678	NON_SYNONYMOUS_CODING CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6912315	3L_6912315_SNP [dm3] 3L_6919215_SNP [dm6]	A	G	1.238e^-4	0.678	INTERGENIC
3L	9226677	3L_9226677_SNP [dm3] 3L_9233577_SNP [dm6]	G	T	1.241e^-4	0.678	INTERGENIC
3L	14481712	3L_14481712_SNP [dm3] 3L_14488612_SNP [dm6]	T	A	1.243e^-4	0.678	INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14481696	3L_14481696_SNP [dm3] 3L_14488596_SNP [dm6]	T	C	1.243e^-4	0.678	INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5645368	3L_5645368_SNP [dm3] 3L_5652268_SNP [dm6]	T	C	1.244e^-4	0.678	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	3416959	3L_3416959_SNP [dm3] 3L_3416959_SNP [dm6]	T	C	1.247e^-4	0.678	UTR_5_PRIME sty INTRON sty	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	15641903	2L_15641903_SNP [dm3] 2L_15641903_SNP [dm6]	C	T	1.247e^-4	0.678	INTERGENIC
2L	4749605	2L_4749605_SNP [dm3] 2L_4749605_SNP [dm6]	G	A	1.248e^-4	0.678	INTRON CG15630
3R	4883149	3R_4883149_SNP [dm3] 3R_9057427_SNP [dm6]	A	C	1.253e^-4	0.678	INTRON Kdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	25527985	3R_25527985_SNP [dm3] 3R_29702263_SNP [dm6]	G	A	1.255e^-4	0.678	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi
2R	18433080	2R_18433080_SNP [dm3] 2R_22545575_SNP [dm6]	T	C	1.257e^-4	0.678	INTRON px	TF binding site BDTNP1_TFBS_dl
3R	9954837	3R_9954837_SNP [dm3] 3R_14129115_SNP [dm6]	A	C	1.265e^-4	0.678	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20898756	3R_20898756_SNP [dm3] 3R_25073034_SNP [dm6]	G	A	1.274e^-4	0.678	SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
3L	22653289	3L_22653289_SNP [dm3] 3L_22660189_SNP [dm6]	G	C	1.275e^-4	0.678	INTERGENIC
3R	11128835	3R_11128835_SNP [dm3] 3R_15303113_SNP [dm6]	A	C	1.281e^-4	0.678	INTRON Tm1
3L	7713405	3L_7713405_SNP [dm3] 3L_7720305_SNP [dm6]	T	C	1.283e^-4	0.678	SYNONYMOUS_CODING CG12262 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22118045	3L_22118045_SNP [dm3] 3L_22124945_SNP [dm6]	T	A	1.287e^-4	0.678	INTERGENIC
3R	20899121	3R_20899121_SNP [dm3] 3R_25073399_SNP [dm6]	T	G	1.288e^-4	0.678	SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836	TF binding site mE1_TFBS_sbb
2R	20214999	2R_20214999_SNP [dm3] 2R_24327476_SNP [dm6]	A	C	1.292e^-4	0.678	INTRON CR44810
3R	18971433	3R_18971433_SNP [dm3] 3R_23145711_SNP [dm6]	T	C	1.308e^-4	0.678	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	11733963	2L_11733963_SNP [dm3] 2L_11733963_SNP [dm6]	T	C	1.316e^-4	0.678	INTERGENIC
2R	15481699	2R_15481699_SNP [dm3] 2R_19594194_SNP [dm6]	C	T	1.316e^-4	0.678	SYNONYMOUS_CODING CG16716 INTRON sm
2L	9252819	2L_9252819_SNP [dm3] 2L_9252819_SNP [dm6]	G	C	1.320e^-4	0.678	SYNONYMOUS_CODING borr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6891662	3L_6891662_SNP [dm3] 3L_6898562_SNP [dm6]	C	G	1.320e^-4	0.678	INTERGENIC
2R	12326601	2R_12326601_SNP [dm3] 2R_16439096_SNP [dm6]	C	T	1.324e^-4	0.678	INTERGENIC
3R	23021286	3R_23021286_SNP [dm3] 3R_27195564_SNP [dm6]	G	T	1.324e^-4	0.678	INTERGENIC	regulatory region REDfly_CRMs
2R	17809646	2R_17809646_SNP [dm3] 2R_21922141_SNP [dm6]	C	T	1.325e^-4	0.678	INTRON Fili
3R	25300665	3R_25300665_SNP [dm3] 3R_29474943_SNP [dm6]	G	C	1.334e^-4	0.678	INTRON Ptp99A
2L	6916430	2L_6916430_SNP [dm3] 2L_6916430_SNP [dm6]	A	T	1.336e^-4	0.678	UTR_5_PRIME CG32829 DOWNSTREAM nop5 & 1 other INTRON x16
2L	11180837	2L_11180837_SNP [dm3] 2L_11180837_SNP [dm6]	T	C	1.337e^-4	0.678	DOWNSTREAM CG4788 INTRON Ca-beta	TF binding site mE1_TFBS_cad
2R	9466151	2R_9466151_SNP [dm3] 2R_13578646_SNP [dm6]	G	A	1.344e^-4	0.678	EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11310796	3R_11310796_SNP [dm3] 3R_15485074_SNP [dm6]	G	T	1.344e^-4	0.678	SPLICE_SITE_REGION Trissin SYNONYMOUS_CODING Trissin UPSTREAM CG5205 DOWNSTREAM Rh6
3R	5651214	3R_5651214_SNP [dm3] 3R_9825492_SNP [dm6]	T	A	1.348e^-4	0.678	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
X	8075630	X_8075630_DEL [dm3] X_8181597_DEL [dm6]	AATGCCCCAAGAC...	A	1.354e^-4	0.678	INTRON sdt
3R	14145413	3R_14145413_SNP [dm3] 3R_18319691_SNP [dm6]	T	C	1.358e^-4	0.678	INTRON CG31235
2L	21127426	2L_21127426_SNP [dm3] 2L_21127426_SNP [dm6]	T	A	1.362e^-4	0.678	INTRON Nhe2
3L	14081650	3L_14081650_SNP [dm3] 3L_14088550_SNP [dm6]	G	A	1.367e^-4	0.678	INTERGENIC
3R	25735005	3R_25735005_SNP [dm3] 3R_29909283_SNP [dm6]	A	C	1.371e^-4	0.678	SYNONYMOUS_CODING CG31036
2L	12160224	2L_12160224_INS [dm3] 2L_12160224_INS [dm6]	A	AGGATTTTA	1.379e^-4	0.678	INTRON CG31760	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7053533	3R_7053533_SNP [dm3] 3R_11227811_SNP [dm6]	A	C	1.381e^-4	0.678	NON_SYNONYMOUS_CODING CG17726 DOWNSTREAM GCC88	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	22118140	3L_22118140_SNP [dm3] 3L_22125040_SNP [dm6]	T	G	1.391e^-4	0.678	INTERGENIC
3L	5645286	3L_5645286_SNP [dm3] 3L_5652186_SNP [dm6]	T	C	1.392e^-4	0.678	DOWNSTREAM Blimp-1 INTERGENIC
3R	4691957	3R_4691957_SNP [dm3] 3R_8866235_SNP [dm6]	G	A	1.412e^-4	0.678	INTRON pyd
3R	6863579	3R_6863579_INS [dm3] 3R_11037857_INS [dm6]	G	GAGA	1.415e^-4	0.678	INTRON CG34114
2L	3458447	2L_3458447_SNP [dm3] 2L_3458447_SNP [dm6]	C	T	1.420e^-4	0.678	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9545525	3L_9545525_SNP [dm3] 3L_9552425_SNP [dm6]	T	A	1.421e^-4	0.678	INTRON CG42673
3R	25528155	3R_25528155_SNP [dm3] 3R_29702433_SNP [dm6]	T	A	1.422e^-4	0.678	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi
3R	12567007	3R_12567007_SNP [dm3] 3R_16741285_SNP [dm6]	T	A	1.427e^-4	0.678	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12567038	3R_12567038_SNP [dm3] 3R_16741316_SNP [dm6]	G	A	1.427e^-4	0.678	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10947479	2R_10947479_SNP [dm3] 2R_15059974_SNP [dm6]	T	C	1.430e^-4	0.678	INTERGENIC
2L	2920322	2L_2920322_SNP [dm3] 2L_2920322_SNP [dm6]	T	G	1.433e^-4	0.678	INTRON lilli
2L	11020207	2L_11020207_DEL [dm3] 2L_11020207_DEL [dm6]	CC	C	1.437e^-4	0.678	INTRON Samuel
3R	23845438	3R_23845438_SNP [dm3] 3R_28019716_SNP [dm6]	G	T	1.442e^-4	0.678	INTERGENIC
2L	11480155	2L_11480155_SNP [dm3] 2L_11480155_SNP [dm6]	G	T	1.446e^-4	0.678	INTERGENIC
2L	11943129	2L_11943129_SNP [dm3] 2L_11943129_SNP [dm6]	G	T	1.447e^-4	0.678	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
2R	19563579	2R_19563579_SNP [dm3] 2R_23676056_SNP [dm6]	T	A	1.454e^-4	0.678	UPSTREAM Pde8 INTRON Pde8	TF binding site mE1_TFBS_chinmo
3L	5645292	3L_5645292_SNP [dm3] 3L_5652192_SNP [dm6]	G	A	1.457e^-4	0.678	DOWNSTREAM Blimp-1 INTERGENIC
2L	5227843	2L_5227843_SNP [dm3] 2L_5227843_SNP [dm6]	G	A	1.466e^-4	0.678	INTRON tkv
3R	1970751	3R_1970751_SNP [dm3] 3R_6145029_SNP [dm6]	A	C	1.481e^-4	0.678	INTERGENIC
2L	12497950	2L_12497950_SNP [dm3] 2L_12497950_SNP [dm6]	C	T	1.482e^-4	0.678	UPSTREAM t-cup INTRON bun
X	4814984	X_4814984_SNP [dm3] X_4920951_SNP [dm6]	T	C	1.484e^-4	0.678	SYNONYMOUS_CODING CG6903 DOWNSTREAM CG44774	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	10486072	3L_10486072_SNP [dm3] 3L_10492972_SNP [dm6]	T	A	1.486e^-4	0.678	DOWNSTREAM S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25408854	3R_25408854_SNP [dm3] 3R_29583132_SNP [dm6]	A	T	1.497e^-4	0.678	INTERGENIC
3R	16174491	3R_16174491_SNP [dm3] 3R_20348769_SNP [dm6]	A	T	1.499e^-4	0.678	INTERGENIC
3R	23845267	3R_23845267_SNP [dm3] 3R_28019545_SNP [dm6]	A	T	1.512e^-4	0.678	INTERGENIC
X	16289745	X_16289745_SNP [dm3] X_16395712_SNP [dm6]	A	G	1.512e^-4	0.678	SYNONYMOUS_CODING mei-41
2R	14623383	2R_14623383_SNP [dm3] 2R_18735878_SNP [dm6]	C	A	1.516e^-4	0.678	INTRON Hs3st-A
X	4254001	X_4254001_SNP [dm3] X_4359968_SNP [dm6]	T	C	1.519e^-4	0.678	SYNONYMOUS_CODING norpA
X	20397663	X_20397663_SNP [dm3] X_20526636_SNP [dm6]	C	A	1.527e^-4	0.678	UPSTREAM CG42579 INTERGENIC
2L	7969876	2L_7969876_SNP [dm3] 2L_7969876_SNP [dm6]	T	A	1.530e^-4	0.678	INTRON Snoo
3L	19575347	3L_19575347_SNP [dm3] 3L_19582247_SNP [dm6]	G	C	1.535e^-4	0.678	INTRON Shal
3R	6584703	3R_6584703_SNP [dm3] 3R_10758981_SNP [dm6]	C	A	1.535e^-4	0.678	DOWNSTREAM CR45015 INTRON CG31272	TF binding site mE1_TFBS_Kr
3L	10048233	3L_10048233_SNP [dm3] 3L_10055133_SNP [dm6]	A	T	1.538e^-4	0.678	INTRON dpr6
3L	21758012	3L_21758012_SNP [dm3] 3L_21764912_SNP [dm6]	T	C	1.541e^-4	0.678	INTRON Syn1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
3L	6898268	3L_6898268_SNP [dm3] 3L_6905168_SNP [dm6]	G	T	1.550e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	2538159	2L_2538159_SNP [dm3] 2L_2538159_SNP [dm6]	G	A	1.557e^-4	0.678	INTERGENIC
3R	15899665	3R_15899665_DEL [dm3] 3R_20073943_DEL [dm6]	TA	T	1.558e^-4	0.678	INTERGENIC
3L	6902409	3L_6902409_DEL [dm3] 3L_6909309_DEL [dm6]	TCCATAAATT	T	1.562e^-4	0.678	INTERGENIC
2L	12897314	2L_12897314_DEL [dm3] 2L_12897314_DEL [dm6]	TT	T	1.563e^-4	0.678	INTERGENIC
2R	16935350	2R_16935350_SNP [dm3] 2R_21047845_SNP [dm6]	C	G	1.564e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	7712533	3R_7712533_SNP [dm3] 3R_11886811_SNP [dm6]	G	T	1.564e^-4	0.678	NON_SYNONYMOUS_CODING mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12670382	2R_12670382_SNP [dm3] 2R_16782877_SNP [dm6]	G	A	1.565e^-4	0.678	UTR_3_PRIME resilin UPSTREAM CG5522	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4667510	3R_4667510_SNP [dm3] 3R_8841788_SNP [dm6]	T	A	1.566e^-4	0.678	INTRON pyd	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4921493	2R_4921493_SNP [dm3] 2R_9033988_SNP [dm6]	T	C	1.572e^-4	0.678	INTERGENIC
3R	12567264	3R_12567264_SNP [dm3] 3R_16741542_SNP [dm6]	C	A	1.573e^-4	0.678	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	10732959	3L_10732959_DEL [dm3] 3L_10739859_DEL [dm6]	ACCA	A	1.579e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10732964	3L_10732964_SNP [dm3] 3L_10739864_SNP [dm6]	A	G	1.579e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	1971622	3R_1971622_SNP [dm3] 3R_6145900_SNP [dm6]	C	T	1.582e^-4	0.678	INTERGENIC
3L	1252592	3L_1252592_SNP [dm3] 3L_1252592_SNP [dm6]	T	C	1.584e^-4	0.678	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9839158	2L_9839158_SNP [dm3] 2L_9839158_SNP [dm6]	C	T	1.584e^-4	0.678	INTRON nAChRalpha6	TF binding site mE1_TFBS_chinmo
X	2627861	X_2627861_SNP [dm3] X_2733828_SNP [dm6]	A	C	1.586e^-4	0.678	SYNONYMOUS_CODING CG2712 DOWNSTREAM crm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6249228	3R_6249228_SNP [dm3] 3R_10423506_SNP [dm6]	T	A	1.595e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7170385	3R_7170385_SNP [dm3] 3R_11344663_SNP [dm6]	A	G	1.604e^-4	0.678	INTRON pros	TF binding site BDTNP1_TFBS_dl
X	8075623	X_8075623_SNP [dm3] X_8181590_SNP [dm6]	A	G	1.617e^-4	0.678	INTRON sdt
3R	1079186	3R_1079186_SNP [dm3] 3R_5253464_SNP [dm6]	G	A	1.617e^-4	0.678	SYNONYMOUS_CODING CG1113
3R	25396313	3R_25396313_SNP [dm3] 3R_29570591_SNP [dm6]	G	A	1.629e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10946212	2R_10946212_SNP [dm3] 2R_15058707_SNP [dm6]	G	A	1.635e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12532213	3R_12532213_SNP [dm3] 3R_16706491_SNP [dm6]	T	G	1.650e^-4	0.678	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22399001	3R_22399001_SNP [dm3] 3R_26573279_SNP [dm6]	G	A	1.659e^-4	0.678	INTRON scrib
3L	10048061	3L_10048061_SNP [dm3] 3L_10054961_SNP [dm6]	A	T	1.660e^-4	0.678	INTRON dpr6
3L	6879050	3L_6879050_SNP [dm3] 3L_6885950_SNP [dm6]	C	T	1.662e^-4	0.678	INTERGENIC
X	14421244	X_14421244_SNP [dm3] X_14527211_SNP [dm6]	G	A	1.664e^-4	0.678	INTERGENIC
3R	22311672	3R_22311672_SNP [dm3] 3R_26485950_SNP [dm6]	A	C	1.672e^-4	0.678	INTRON plum
3L	1564932	3L_1564932_SNP [dm3] 3L_1564932_SNP [dm6]	T	C	1.674e^-4	0.678	UPSTREAM CG12003 INTRON CG7879
2R	13119399	2R_13119399_SNP [dm3] 2R_17231894_SNP [dm6]	T	C	1.677e^-4	0.678	INTRON mbl
3R	18257149	3R_18257149_SNP [dm3] 3R_22431427_SNP [dm6]	C	T	1.677e^-4	0.678	INTRON CG13847
3R	23847319	3R_23847319_SNP [dm3] 3R_28021597_SNP [dm6]	C	A	1.688e^-4	0.678	INTERGENIC
2L	4551529	2L_4551529_SNP [dm3] 2L_4551529_SNP [dm6]	T	C	1.690e^-4	0.678	INTRON dp
3L	5620322	3L_5620322_SNP [dm3] 3L_5627222_SNP [dm6]	A	C	1.696e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11942719	2L_11942719_SNP [dm3] 2L_11942719_SNP [dm6]	C	T	1.697e^-4	0.678	INTERGENIC	regulatory region REDfly_CRMs
2L	14140835	2L_14140835_SNP [dm3] 2L_14140835_SNP [dm6]	C	G	1.697e^-4	0.678	INTRON CG17341
X	15660026	X_15660026_SNP [dm3] X_15765993_SNP [dm6]	G	A	1.698e^-4	0.678	SYNONYMOUS_CODING CG8952 INTRON CG17209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1847616	3L_1847616_SNP [dm3] 3L_1847616_SNP [dm6]	A	G	1.701e^-4	0.678	INTERGENIC
3R	15466061	3R_15466061_SNP [dm3] 3R_19640339_SNP [dm6]	C	T	1.702e^-4	0.678	INTRON subdued
3L	6307817	3L_6307817_SNP [dm3] 3L_6314717_SNP [dm6]	G	C	1.702e^-4	0.678	INTERGENIC
3L	9028842	3L_9028842_SNP [dm3] 3L_9035742_SNP [dm6]	A	G	1.705e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2796940	3L_2796940_SNP [dm3] 3L_2796940_SNP [dm6]	A	T	1.723e^-4	0.678	INTRON CG43444
3R	10872964	3R_10872964_SNP [dm3] 3R_15047242_SNP [dm6]	G	A	1.729e^-4	0.678	INTERGENIC
2R	8654877	2R_8654877_SNP [dm3] 2R_12767372_SNP [dm6]	G	T	1.736e^-4	0.678	INTERGENIC
3L	10733079	3L_10733079_SNP [dm3] 3L_10739979_SNP [dm6]	T	G	1.744e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	14992766	3R_14992766_SNP [dm3] 3R_19167044_SNP [dm6]	A	G	1.747e^-4	0.678	INTRON sqz
3R	13647711	3R_13647711_SNP [dm3] 3R_17821989_SNP [dm6]	T	C	1.756e^-4	0.678	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	11480112	2L_11480112_SNP [dm3] 2L_11480112_SNP [dm6]	A	C	1.758e^-4	0.678	INTERGENIC
X	19435273	X_19435273_SNP [dm3] X_19541240_SNP [dm6]	A	T	1.760e^-4	0.678	INTRON CG32532
3R	14130969	3R_14130969_SNP [dm3] 3R_18305247_SNP [dm6]	T	C	1.760e^-4	0.678	SYNONYMOUS_CODING PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17422756	2R_17422756_SNP [dm3] 2R_21535251_SNP [dm6]	C	A	1.762e^-4	0.678	DOWNSTREAM CG30286 INTRON Egfr	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10122990	3R_10122990_SNP [dm3] 3R_14297268_SNP [dm6]	C	A	1.763e^-4	0.678	UPSTREAM CG12207 INTRON CG12207
3L	10022208	3L_10022208_SNP [dm3] 3L_10029108_SNP [dm6]	G	T	1.766e^-4	0.678	DOWNSTREAM CR45155 INTRON dpr6
3L	5354884	3L_5354884_SNP [dm3] 3L_5361784_SNP [dm6]	G	A	1.767e^-4	0.678	SYNONYMOUS_CODING CG4769
2L	3670850	2L_3670850_SNP [dm3] 2L_3670850_SNP [dm6]	C	G	1.768e^-4	0.678	UPSTREAM Sfp24Bc INTRON CG34340
X	21845797	X_21845797_DEL [dm3] X_22443961_DEL [dm6]	CAACCTGTATAAG...	TTGGT	1.769e^-4	0.678	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	6893990	3L_6893990_SNP [dm3] 3L_6900890_SNP [dm6]	A	T	1.770e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	4684750	3L_4684750_SNP [dm3] 3L_4684750_SNP [dm6]	C	G	1.771e^-4	0.678	INTRON axo
X	20044332	X_20044332_SNP [dm3] X_20150299_SNP [dm6]	C	A	1.776e^-4	0.678	INTRON CG9572
3L	6448871	3L_6448871_SNP [dm3] 3L_6455771_SNP [dm6]	G	A	1.778e^-4	0.678	INTRON CG42747
3L	21727059	3L_21727059_SNP [dm3] 3L_21733959_SNP [dm6]	G	A	1.779e^-4	0.678	UPSTREAM CG14573 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	5383308	3L_5383308_SNP [dm3] 3L_5390208_SNP [dm6]	C	T	1.785e^-4	0.678	INTERGENIC
3R	12464661	3R_12464661_SNP [dm3] 3R_16638939_SNP [dm6]	G	A	1.786e^-4	0.678	UTR_3_PRIME Fas1 DOWNSTREAM Fas1	TF binding site mE1_TFBS_HSA
X	22058066	X_22058066_SNP [dm3] X_22656230_SNP [dm6]	G	T	1.787e^-4	0.678	INTERGENIC
3L	3090480	3L_3090480_SNP [dm3] 3L_3090480_SNP [dm6]	A	C	1.791e^-4	0.678	UPSTREAM snRNA:U5:63BC DOWNSTREAM Cht7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	4621422	X_4621422_SNP [dm3] X_4727389_SNP [dm6]	C	T	1.792e^-4	0.678	SYNONYMOUS_CODING Proc-R
3R	22396306	3R_22396306_SNP [dm3] 3R_26570584_SNP [dm6]	G	A	1.793e^-4	0.678	INTRON scrib	TF binding site BDTNP1_TFBS_twi
2R	12327156	2R_12327156_SNP [dm3] 2R_16439651_SNP [dm6]	T	G	1.797e^-4	0.678	INTERGENIC
3L	7083666	3L_7083666_SNP [dm3] 3L_7090566_SNP [dm6]	T	C	1.800e^-4	0.678	INTERGENIC
X	6520215	X_6520215_INS [dm3] X_6626182_INS [dm6]	C	CAAATTGTAAAAATTGTACA...	1.801e^-4	0.678	INTRON pigs
3L	10049471	3L_10049471_SNP [dm3] 3L_10056371_SNP [dm6]	T	A	1.801e^-4	0.678	INTRON dpr6
X	16803257	X_16803257_SNP [dm3] X_16909224_SNP [dm6]	G	T	1.803e^-4	0.678	INTRON CR44754
3R	15466053	3R_15466053_SNP [dm3] 3R_19640331_SNP [dm6]	G	T	1.809e^-4	0.678	INTRON subdued
2L	4623064	2L_4623064_SNP [dm3] 2L_4623064_SNP [dm6]	C	T	1.816e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6900678	3L_6900678_SNP [dm3] 3L_6907578_SNP [dm6]	T	C	1.820e^-4	0.678	INTERGENIC
3R	25397708	3R_25397708_SNP [dm3] 3R_29571986_SNP [dm6]	C	T	1.821e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	16795859	2L_16795859_INS [dm3] 2L_16795859_INS [dm6]	A	ACAA	1.827e^-4	0.678	UTR_3_PRIME Ugt36Ba UPSTREAM Ugt36Bb DOWNSTREAM Ugt36Ba
3L	10486067	3L_10486067_SNP [dm3] 3L_10492967_SNP [dm6]	T	G	1.828e^-4	0.678	DOWNSTREAM S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19341296	3R_19341296_SNP [dm3] 3R_23515574_SNP [dm6]	C	T	1.828e^-4	0.678	INTRON Irk2
3R	16773596	3R_16773596_SNP [dm3] 3R_20947874_SNP [dm6]	T	C	1.839e^-4	0.678	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
3R	6574413	3R_6574413_SNP [dm3] 3R_10748691_SNP [dm6]	G	C	1.847e^-4	0.678	INTRON TkR86C
2L	15837146	2L_15837146_SNP [dm3] 2L_15837146_SNP [dm6]	G	A	1.849e^-4	0.678	EXON CR31822
3R	7075576	3R_7075576_SNP [dm3] 3R_11249854_SNP [dm6]	A	T	1.850e^-4	0.678	EXON CR43283	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12338016	2L_12338016_SNP [dm3] 2L_12338016_SNP [dm6]	C	A	1.851e^-4	0.678	UPSTREAM CG31862 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13154183	2L_13154183_SNP [dm3] 2L_13154183_SNP [dm6]	T	G	1.854e^-4	0.678	INTERGENIC
2R	13932128	2R_13932128_SNP [dm3] 2R_18044623_SNP [dm6]	A	G	1.857e^-4	0.678	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
2L	10040383	2L_10040383_SNP [dm3] 2L_10040383_SNP [dm6]	T	A	1.858e^-4	0.678	INTERGENIC
2L	18941559	2L_18941559_SNP [dm3] 2L_18941559_SNP [dm6]	T	G	1.861e^-4	0.678	SYNONYMOUS_CODING ssp3	TF binding site mE1_TFBS_HSA
3R	16029328	3R_16029328_SNP [dm3] 3R_20203606_SNP [dm6]	T	C	1.866e^-4	0.678	INTERGENIC
3L	10733089	3L_10733089_INS [dm3] 3L_10739989_INS [dm6]	G	GG	1.867e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	13389889	X_13389889_SNP [dm3] X_13495856_SNP [dm6]	A	G	1.868e^-4	0.678	NON_SYNONYMOUS_CODING Neto
2R	10945774	2R_10945774_SNP [dm3] 2R_15058269_SNP [dm6]	T	G	1.869e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2557125	3L_2557125_SNP [dm3] 3L_2557125_SNP [dm6]	G	T	1.870e^-4	0.678	INTRON msn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12498363	2L_12498363_SNP [dm3] 2L_12498363_SNP [dm6]	T	C	1.871e^-4	0.678	INTRON bun
2R	15074142	2R_15074142_SNP [dm3] 2R_19186637_SNP [dm6]	A	G	1.879e^-4	0.678	INTRON hppy
3R	11900809	3R_11900809_SNP [dm3] 3R_16075087_SNP [dm6]	T	G	1.895e^-4	0.678	SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20898755	3R_20898755_SNP [dm3] 3R_25073033_SNP [dm6]	A	T	1.900e^-4	0.678	NON_SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
3L	22714555	3L_22714555_SNP [dm3] 3L_22721455_SNP [dm6]	T	C	1.906e^-4	0.678	NON_SYNONYMOUS_CODING CG14451	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8763048	2L_8763048_SNP [dm3] 2L_8763048_SNP [dm6]	T	A	1.913e^-4	0.678	INTERGENIC
X	8075624	X_8075624_SNP [dm3] X_8181591_SNP [dm6]	T	A	1.913e^-4	0.678	INTRON sdt
3R	13765527	3R_13765527_DEL [dm3] 3R_17939805_DEL [dm6]	AA	A	1.914e^-4	0.678	INTRON cpo	TF binding site mE1_TFBS_sens
2L	16526208	2L_16526208_SNP [dm3] 2L_16526208_SNP [dm6]	G	A	1.919e^-4	0.678	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	15095317	X_15095317_SNP [dm3] X_15201284_SNP [dm6]	G	C	1.925e^-4	0.678	INTERGENIC
2R	19238645	2R_19238645_SNP [dm3] 2R_23351122_SNP [dm6]	C	G	1.929e^-4	0.678	UPSTREAM CG34210 INTERGENIC
3L	21756069	3L_21756069_SNP [dm3] 3L_21762969_SNP [dm6]	G	T	1.941e^-4	0.678	INTRON Syn1
2L	13904855	2L_13904855_SNP [dm3] 2L_13904855_SNP [dm6]	C	T	1.941e^-4	0.678	UPSTREAM Smg5 & 1 other INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
X	4253992	X_4253992_SNP [dm3] X_4359959_SNP [dm6]	C	T	1.942e^-4	0.678	SYNONYMOUS_CODING norpA
3R	17942048	3R_17942048_SNP [dm3] 3R_22116326_SNP [dm6]	C	T	1.947e^-4	0.678	SYNONYMOUS_CODING Ir94b
3L	21709905	3L_21709905_SNP [dm3] 3L_21716805_SNP [dm6]	G	T	1.955e^-4	0.678	INTERGENIC
3L	10732986	3L_10732986_SNP [dm3] 3L_10739886_SNP [dm6]	G	T	1.956e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	9537124	2R_9537124_SNP [dm3] 2R_13649619_SNP [dm6]	G	T	1.956e^-4	0.678	INTRON fas
3R	25316524	3R_25316524_SNP [dm3] 3R_29490802_SNP [dm6]	C	T	1.962e^-4	0.678	SPLICE_SITE_REGION Spase12 UTR_3_PRIME CG2006 DOWNSTREAM CG2310 & 1 other INTRON Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8965243	X_8965243_SNP [dm3] X_9071210_SNP [dm6]	C	T	1.969e^-4	0.678	UTR_5_PRIME CG10970 UTR_3_PRIME CG44325 DOWNSTREAM CG44325 INTRON CG44325
3R	11885394	3R_11885394_SNP [dm3] 3R_16059672_SNP [dm6]	C	T	1.975e^-4	0.678	SYNONYMOUS_CODING msps DOWNSTREAM CG10185
3R	14924176	3R_14924176_SNP [dm3] 3R_19098454_SNP [dm6]	G	A	1.978e^-4	0.678	INTRON CG6040
2L	11191025	2L_11191025_SNP [dm3] 2L_11191025_SNP [dm6]	A	G	1.979e^-4	0.678	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4684744	3L_4684744_SNP [dm3] 3L_4684744_SNP [dm6]	A	G	1.986e^-4	0.678	INTRON axo
2R	19927349	2R_19927349_SNP [dm3] 2R_24039826_SNP [dm6]	C	T	1.987e^-4	0.678	SYNONYMOUS_CODING IntS1
3R	13869643	3R_13869643_SNP [dm3] 3R_18043921_SNP [dm6]	A	C	1.989e^-4	0.678	INTERGENIC
3L	15135896	3L_15135896_SNP [dm3] 3L_15142796_SNP [dm6]	G	T	1.994e^-4	0.678	UTR_5_PRIME Pdi UPSTREAM Pdi DOWNSTREAM CG32147 EXON CR45396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7456566	2L_7456566_SNP [dm3] 2L_7456566_SNP [dm6]	G	A	2.002e^-4	0.678	UPSTREAM Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5625952	2R_5625952_SNP [dm3] 2R_9738447_SNP [dm6]	G	T	2.003e^-4	0.678	INTRON sqa
3L	18837863	3L_18837863_SNP [dm3] 3L_18844763_SNP [dm6]	A	G	2.004e^-4	0.678	INTRON Indy
2R	13119670	2R_13119670_SNP [dm3] 2R_17232165_SNP [dm6]	A	C	2.018e^-4	0.678	INTRON mbl
3R	4888296	3R_4888296_SNP [dm3] 3R_9062574_SNP [dm6]	T	C	2.019e^-4	0.678	UTR_3_PRIME Kdm2 DOWNSTREAM beag
3R	6585138	3R_6585138_SNP [dm3] 3R_10759416_SNP [dm6]	C	G	2.019e^-4	0.678	UPSTREAM CG31272 DOWNSTREAM MED7 INTERGENIC	TF binding site mE1_TFBS_Kr
3L	20439623	3L_20439623_SNP [dm3] 3L_20446523_SNP [dm6]	A	C	2.024e^-4	0.678	INTRON CG5910
3L	15608970	3L_15608970_SNP [dm3] 3L_15615870_SNP [dm6]	C	T	2.035e^-4	0.678	INTRON comm3
X	12571664	X_12571664_INS [dm3] X_12677631_INS [dm6]	T	TT	2.039e^-4	0.678	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14116354	2L_14116354_SNP [dm3] 2L_14116354_SNP [dm6]	C	T	2.041e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26726584	3R_26726584_SNP [dm3] 3R_30900862_SNP [dm6]	T	G	2.041e^-4	0.678	SYNONYMOUS_CODING CG33483 DOWNSTREAM Cyp4c3
2R	18258244	2R_18258244_SNP [dm3] 2R_22370739_SNP [dm6]	A	G	2.045e^-4	0.678	INTRON Liprin-gamma
3R	12567291	3R_12567291_SNP [dm3] 3R_16741569_SNP [dm6]	T	C	2.045e^-4	0.678	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3R	5443372	3R_5443372_SNP [dm3] 3R_9617650_SNP [dm6]	G	C	2.053e^-4	0.678	INTRON CG8312
2L	2920397	2L_2920397_SNP [dm3] 2L_2920397_SNP [dm6]	T	A	2.054e^-4	0.678	INTRON lilli
3L	11668538	3L_11668538_SNP [dm3] 3L_11675438_SNP [dm6]	C	T	2.054e^-4	0.678	SYNONYMOUS_CODING CG32085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4888209	3R_4888209_SNP [dm3] 3R_9062487_SNP [dm6]	A	T	2.057e^-4	0.678	UTR_3_PRIME Kdm2 DOWNSTREAM beag	TF binding site mE1_TFBS_cad
3R	17497952	3R_17497952_SNP [dm3] 3R_21672230_SNP [dm6]	G	T	2.062e^-4	0.678	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	19344244	3R_19344244_SNP [dm3] 3R_23518522_SNP [dm6]	T	G	2.069e^-4	0.678	SYNONYMOUS_CODING Irk2 UPSTREAM Irk2
3L	5645297	3L_5645297_SNP [dm3] 3L_5652197_SNP [dm6]	C	T	2.072e^-4	0.678	DOWNSTREAM Blimp-1 INTERGENIC
2L	11837084	2L_11837084_SNP [dm3] 2L_11837084_SNP [dm6]	T	G	2.074e^-4	0.678	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c	transposable element FlyBase
2L	14426083	2L_14426083_SNP [dm3] 2L_14426083_SNP [dm6]	A	T	2.075e^-4	0.678	UPSTREAM Cpr35B INTERGENIC
2R	16725093	2R_16725093_SNP [dm3] 2R_20837588_SNP [dm6]	G	A	2.076e^-4	0.678	EXON CR44667	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12765283	3R_12765283_SNP [dm3] 3R_16939561_SNP [dm6]	T	G	2.077e^-4	0.678	INTRON Abd-B	TF binding site mE1_TFBS_cad
2R	3859921	2R_3859921_SNP [dm3] 2R_7972416_SNP [dm6]	A	G	2.078e^-4	0.678	START_GAINED CSN4 UTR_5_PRIME CSN4 UPSTREAM CSN4 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22398700	3R_22398700_INS [dm3] 3R_26572978_INS [dm6]	T	TATT	2.080e^-4	0.678	INTRON scrib
2L	16477342	2L_16477342_SNP [dm3] 2L_16477342_SNP [dm6]	A	G	2.083e^-4	0.678	INTRON dac	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14422258	2L_14422258_SNP [dm3] 2L_14422258_SNP [dm6]	G	A	2.084e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7712672	3R_7712672_SNP [dm3] 3R_11886950_SNP [dm6]	C	T	2.084e^-4	0.678	UTR_5_PRIME mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8700468	2L_8700468_SNP [dm3] 2L_8700468_SNP [dm6]	A	T	2.085e^-4	0.678	UPSTREAM Hnf4 INTRON Hnf4
X	12151320	X_12151320_SNP [dm3] X_12257287_SNP [dm6]	A	T	2.087e^-4	0.678	INTRON Ten-a
3R	25597155	3R_25597155_SNP [dm3] 3R_29771433_SNP [dm6]	A	T	2.089e^-4	0.678	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6898075	3L_6898075_SNP [dm3] 3L_6904975_SNP [dm6]	A	T	2.097e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	16173921	3R_16173921_SNP [dm3] 3R_20348199_SNP [dm6]	A	G	2.099e^-4	0.678	INTERGENIC
3R	11887627	3R_11887627_SNP [dm3] 3R_16061905_SNP [dm6]	G	A	2.099e^-4	0.678	SYNONYMOUS_CODING CG10185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25527085	3R_25527085_SNP [dm3] 3R_29701363_SNP [dm6]	G	A	2.100e^-4	0.678	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	4684612	3R_4684612_SNP [dm3] 3R_8858890_SNP [dm6]	G	T	2.107e^-4	0.678	INTRON pyd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	19679534	2R_19679534_SNP [dm3] 2R_23792011_SNP [dm6]	G	A	2.111e^-4	0.678	SYNONYMOUS_CODING CG9850 UPSTREAM CG15800
3R	17166451	3R_17166451_SNP [dm3] 3R_21340729_SNP [dm6]	T	C	2.111e^-4	0.678	INTRON CG16791	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15738065	3L_15738065_SNP [dm3] 3L_15744965_SNP [dm6]	G	A	2.114e^-4	0.678	INTERGENIC
3R	4985097	3R_4985097_SNP [dm3] 3R_9159375_SNP [dm6]	A	C	2.117e^-4	0.678	INTRON pum
3L	19402074	3L_19402074_SNP [dm3] 3L_19408974_SNP [dm6]	G	A	2.124e^-4	0.678	INTRON CG32206
2R	17132054	2R_17132054_SNP [dm3] 2R_21244549_SNP [dm6]	G	C	2.124e^-4	0.678	INTRON ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13482138	2L_13482138_SNP [dm3] 2L_13482138_SNP [dm6]	A	G	2.139e^-4	0.678	INTRON CG42784
2L	2920285	2L_2920285_SNP [dm3] 2L_2920285_SNP [dm6]	G	T	2.142e^-4	0.678	INTRON lilli
3R	6857725	3R_6857725_SNP [dm3] 3R_11032003_SNP [dm6]	A	G	2.146e^-4	0.678	INTRON CG34114
3R	20899116	3R_20899116_SNP [dm3] 3R_25073394_SNP [dm6]	A	G	2.149e^-4	0.678	SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836	TF binding site mE1_TFBS_sbb
3L	6893980	3L_6893980_SNP [dm3] 3L_6900880_SNP [dm6]	A	G	2.150e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	15493762	3L_15493762_SNP [dm3] 3L_15500662_SNP [dm6]	C	T	2.151e^-4	0.678	UPSTREAM CG7272 DOWNSTREAM CG7275 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3458174	2L_3458174_SNP [dm3] 2L_3458174_SNP [dm6]	A	T	2.152e^-4	0.678	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17056157	2R_17056157_SNP [dm3] 2R_21168652_SNP [dm6]	G	C	2.154e^-4	0.678	UTR_5_PRIME CG4266 UPSTREAM hng1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_h mE1_TFBS_HSA
3L	6119900	3L_6119900_SNP [dm3] 3L_6126800_SNP [dm6]	G	A	2.156e^-4	0.678	INTRON l_3_mbn
3R	13501511	3R_13501511_SNP [dm3] 3R_17675789_SNP [dm6]	A	T	2.156e^-4	0.678	INTRON alt
2R	20526486	2R_20526486_SNP [dm3] 2R_24638963_SNP [dm6]	A	G	2.159e^-4	0.678	UPSTREAM CG13594 & 1 other INTERGENIC
2L	12338012	2L_12338012_SNP [dm3] 2L_12338012_SNP [dm6]	T	C	2.159e^-4	0.678	UPSTREAM CG31862 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9817591	2L_9817591_DEL [dm3] 2L_9817591_DEL [dm6]	TAATAA	T	2.160e^-4	0.678	INTRON nAChRalpha6
3R	7713209	3R_7713209_SNP [dm3] 3R_11887487_SNP [dm6]	T	G	2.161e^-4	0.678	UPSTREAM mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	11943300	2L_11943300_SNP [dm3] 2L_11943300_SNP [dm6]	T	G	2.161e^-4	0.678	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
X	3202636	X_3202636_SNP [dm3] X_3308603_SNP [dm6]	T	G	2.164e^-4	0.678	INTRON dnc
3R	13399536	3R_13399536_SNP [dm3] 3R_17573814_SNP [dm6]	T	C	2.167e^-4	0.678	INTERGENIC
3R	9822487	3R_9822487_SNP [dm3] 3R_13996765_SNP [dm6]	C	A	2.167e^-4	0.678	INTRON rdx
2R	13932113	2R_13932113_SNP [dm3] 2R_18044608_SNP [dm6]	G	A	2.170e^-4	0.678	UPSTREAM CG5773 INTRON CG5770
3R	13179365	3R_13179365_SNP [dm3] 3R_17353643_SNP [dm6]	C	G	2.184e^-4	0.678	INTRON beat-IIa
3L	5690969	3L_5690969_SNP [dm3] 3L_5697869_SNP [dm6]	A	G	2.186e^-4	0.678	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7991334	3L_7991334_SNP [dm3] 3L_7998234_SNP [dm6]	T	A	2.189e^-4	0.678	INTRON nmo	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	12308561	3L_12308561_SNP [dm3] 3L_12315461_SNP [dm6]	A	C	2.198e^-4	0.678	INTERGENIC
3R	14130612	3R_14130612_SNP [dm3] 3R_18304890_SNP [dm6]	G	C	2.198e^-4	0.678	INTRON PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12157087	2L_12157087_SNP [dm3] 2L_12157087_SNP [dm6]	A	G	2.202e^-4	0.678	INTRON CG31760
2R	4743620	2R_4743620_INS [dm3] 2R_8856115_INS [dm6]	G	GG	2.211e^-4	0.678	DOWNSTREAM sns INTERGENIC
3R	10140518	3R_10140518_SNP [dm3] 3R_14314796_SNP [dm6]	A	C	2.212e^-4	0.678	UPSTREAM Crz DOWNSTREAM CG31321 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22638544	3L_22638544_SNP [dm3] 3L_22645444_SNP [dm6]	G	A	2.216e^-4	0.678	UPSTREAM CG33766 & 1 other DOWNSTREAM CR45381 INTERGENIC
2L	9082346	2L_9082346_SNP [dm3] 2L_9082346_SNP [dm6]	T	C	2.218e^-4	0.678	INTERGENIC
2R	5812256	2R_5812256_SNP [dm3] 2R_9924751_SNP [dm6]	G	A	2.226e^-4	0.678	INTRON Mef2	TF binding site mE1_TFBS_inv
2L	13839841	2L_13839841_SNP [dm3] 2L_13839841_SNP [dm6]	T	C	2.229e^-4	0.678	UTR_3_PRIME CG33307 DOWNSTREAM CG33307 INTRON CenG1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10147880	3R_10147880_SNP [dm3] 3R_14322158_SNP [dm6]	C	G	2.234e^-4	0.678	SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17497948	3R_17497948_SNP [dm3] 3R_21672226_SNP [dm6]	A	T	2.240e^-4	0.678	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14153642	3L_14153642_SNP [dm3] 3L_14160542_SNP [dm6]	T	C	2.241e^-4	0.678	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	17497875	3R_17497875_SNP [dm3] 3R_21672153_SNP [dm6]	T	A	2.243e^-4	0.678	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18319549	2R_18319549_SNP [dm3] 2R_22432044_SNP [dm6]	T	C	2.253e^-4	0.678	INTERGENIC
3L	3090482	3L_3090482_SNP [dm3] 3L_3090482_SNP [dm6]	G	T	2.258e^-4	0.678	UPSTREAM snRNA:U5:63BC DOWNSTREAM Cht7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	14626325	3L_14626325_SNP [dm3] 3L_14633225_SNP [dm6]	C	T	2.260e^-4	0.678	SYNONYMOUS_CODING dlp	TF binding site mE1_TFBS_Trl
2R	20522857	2R_20522857_SNP [dm3] 2R_24635334_SNP [dm6]	C	G	2.263e^-4	0.678	INTRON CG13594
3R	16252225	3R_16252225_SNP [dm3] 3R_20426503_SNP [dm6]	G	A	2.266e^-4	0.678	INTRON Gfrl
3L	1338754	3L_1338754_SNP [dm3] 3L_1338754_SNP [dm6]	T	C	2.279e^-4	0.678	SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199	TF binding site mE1_TFBS_chinmo
3R	23452176	3R_23452176_SNP [dm3] 3R_27626454_SNP [dm6]	A	C	2.283e^-4	0.678	UPSTREAM CG5612 INTRON Tusp
2L	16166255	2L_16166255_SNP [dm3] 2L_16166255_SNP [dm6]	C	T	2.303e^-4	0.678	UTR_5_PRIME Ca-alpha1D
3L	5645415	3L_5645415_SNP [dm3] 3L_5652315_SNP [dm6]	C	T	2.306e^-4	0.678	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	26726587	3R_26726587_SNP [dm3] 3R_30900865_SNP [dm6]	T	A	2.307e^-4	0.678	SYNONYMOUS_CODING CG33483 DOWNSTREAM Cyp4c3
3R	7138135	3R_7138135_SNP [dm3] 3R_11312413_SNP [dm6]	C	G	2.308e^-4	0.678	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16897236	X_16897236_DEL [dm3] X_17003203_DEL [dm6]	ACTCGA	A	2.311e^-4	0.678	INTRON CG45002
3R	10714696	3R_10714696_SNP [dm3] 3R_14888974_SNP [dm6]	A	T	2.313e^-4	0.678	UTR_3_PRIME CG33332 DOWNSTREAM CycC
3R	11924901	3R_11924901_SNP [dm3] 3R_16099179_SNP [dm6]	C	G	2.315e^-4	0.678	UPSTREAM Akt1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6246042	3L_6246042_SNP [dm3] 3L_6252942_SNP [dm6]	A	T	2.315e^-4	0.678	INTRON Best2
3R	7138459	3R_7138459_SNP [dm3] 3R_11312737_SNP [dm6]	A	T	2.315e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	21760906	3L_21760906_SNP [dm3] 3L_21767806_SNP [dm6]	G	C	2.318e^-4	0.678	INTRON Syn1 & 1 other
3R	25531095	3R_25531095_SNP [dm3] 3R_29705373_SNP [dm6]	G	T	2.322e^-4	0.678	INTERGENIC
3R	4886039	3R_4886039_SNP [dm3] 3R_9060317_SNP [dm6]	C	G	2.329e^-4	0.678	SYNONYMOUS_CODING Kdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10017113	3R_10017113_SNP [dm3] 3R_14191391_SNP [dm6]	A	C	2.332e^-4	0.678	INTRON Dop1R1
3L	18197908	3L_18197908_SNP [dm3] 3L_18204808_SNP [dm6]	G	T	2.338e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2913190	2R_2913190_SNP [dm3] 2R_7025685_SNP [dm6]	G	C	2.343e^-4	0.678	INTRON Tsp42Ef	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11955477	3R_11955477_SNP [dm3] 3R_16129755_SNP [dm6]	C	T	2.351e^-4	0.678	INTRON Sb
2L	9839036	2L_9839036_SNP [dm3] 2L_9839036_SNP [dm6]	G	C	2.352e^-4	0.678	INTRON nAChRalpha6
3R	23472049	3R_23472049_SNP [dm3] 3R_27646327_SNP [dm6]	G	C	2.353e^-4	0.678	INTRON tau	TF binding site BDTNP1_TFBS_prd
3R	14678004	3R_14678004_SNP [dm3] 3R_18852282_SNP [dm6]	G	A	2.354e^-4	0.678	UPSTREAM CG31226 INTERGENIC
3L	1577456	3L_1577456_SNP [dm3] 3L_1577456_SNP [dm6]	A	G	2.364e^-4	0.678	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_Trl
X	12493569	X_12493569_SNP [dm3] X_12599536_SNP [dm6]	G	T	2.365e^-4	0.678	SYNONYMOUS_CODING Sec16	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	12592690	2L_12592690_SNP [dm3] 2L_12592690_SNP [dm6]	A	G	2.371e^-4	0.678	INTRON nub
2L	18917742	2L_18917742_SNP [dm3] 2L_18917742_SNP [dm6]	G	A	2.380e^-4	0.678	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6888288	3L_6888288_SNP [dm3] 3L_6895188_SNP [dm6]	G	C	2.383e^-4	0.678	INTERGENIC
X	5093625	X_5093625_SNP [dm3] X_5199592_SNP [dm6]	A	G	2.384e^-4	0.678	INTRON rg & 1 other
2L	15911411	2L_15911411_SNP [dm3] 2L_15911411_SNP [dm6]	G	C	2.396e^-4	0.678	UPSTREAM CR44867 INTRON beat-Ib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	16725529	2R_16725529_DEL [dm3] 2R_20838024_DEL [dm6]	CC	A	2.398e^-4	0.678	INTRON CR44667	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	9859802	2R_9859802_SNP [dm3] 2R_13972297_SNP [dm6]	T	C	2.406e^-4	0.678	SYNONYMOUS_CODING CG18568 DOWNSTREAM CG6701
3R	7732699	3R_7732699_SNP [dm3] 3R_11906977_SNP [dm6]	C	T	2.409e^-4	0.678	INTRON Cad87A
3R	22050007	3R_22050007_INS [dm3] 3R_26224285_INS [dm6]	G	GTTTCTCGATTATTCAG...	2.414e^-4	0.678	INTERGENIC
2L	2842903	2L_2842903_SNP [dm3] 2L_2842903_SNP [dm6]	G	A	2.418e^-4	0.678	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
X	8075627	X_8075627_SNP [dm3] X_8181594_SNP [dm6]	A	T	2.419e^-4	0.678	INTRON sdt
3R	15466078	3R_15466078_SNP [dm3] 3R_19640356_SNP [dm6]	C	G	2.420e^-4	0.678	INTRON subdued
3L	5646513	3L_5646513_SNP [dm3] 3L_5653413_SNP [dm6]	A	T	2.422e^-4	0.678	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	13304784	2L_13304784_SNP [dm3] 2L_13304784_SNP [dm6]	C	T	2.427e^-4	0.678	UTR_3_PRIME CG43778 UPSTREAM CG16825	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12567270	3R_12567270_SNP [dm3] 3R_16741548_SNP [dm6]	G	C	2.432e^-4	0.678	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	1338594	3L_1338594_SNP [dm3] 3L_1338594_SNP [dm6]	A	C	2.434e^-4	0.678	SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	26936709	3R_26936709_SNP [dm3] 3R_31110987_SNP [dm6]	A	T	2.440e^-4	0.678	INTERGENIC
X	10782827	X_10782827_DEL [dm3] X_10888794_DEL [dm6]	AT	G	2.444e^-4	0.678	INTRON Ork1
3R	11885042	3R_11885042_SNP [dm3] 3R_16059320_SNP [dm6]	T	C	2.446e^-4	0.678	SYNONYMOUS_CODING msps
3R	11892423	3R_11892423_SNP [dm3] 3R_16066701_SNP [dm6]	C	G	2.450e^-4	0.678	INTRON CG10185	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12420615	2R_12420615_SNP [dm3] 2R_16533110_SNP [dm6]	A	C	2.451e^-4	0.678	UTR_3_PRIME Sema-2a
3R	25622038	3R_25622038_SNP [dm3] 3R_29796316_SNP [dm6]	A	G	2.454e^-4	0.678	SYNONYMOUS_CODING CG7837 DOWNSTREAM sro	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12078301	3R_12078301_SNP [dm3] 3R_16252579_SNP [dm6]	C	G	2.455e^-4	0.678	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	12337464	2L_12337464_SNP [dm3] 2L_12337464_SNP [dm6]	C	A	2.456e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5611653	2R_5611653_SNP [dm3] 2R_9724148_SNP [dm6]	G	C	2.460e^-4	0.678	INTRON sqa
3L	15467097	3L_15467097_SNP [dm3] 3L_15473997_SNP [dm6]	C	T	2.464e^-4	0.678	INTRON CG7804
2R	13932134	2R_13932134_SNP [dm3] 2R_18044629_SNP [dm6]	G	A	2.468e^-4	0.678	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
3L	18406388	3L_18406388_SNP [dm3] 3L_18413288_SNP [dm6]	A	G	2.469e^-4	0.678	INTERGENIC
X	911866	X_911866_SNP [dm3] X_1017833_SNP [dm6]	G	C	2.475e^-4	0.678	INTRON su_w[a]_ & 1 other
3L	13903954	3L_13903954_SNP [dm3] 3L_13910854_SNP [dm6]	A	T	2.477e^-4	0.678	INTRON Rgl
X	905670	X_905670_DEL [dm3] X_1011637_DEL [dm6]	CAC	C	2.477e^-4	0.678	UTR_5_PRIME TfIIA-S-2 UPSTREAM CG14631
2L	3802356	2L_3802356_SNP [dm3] 2L_3802356_SNP [dm6]	C	T	2.478e^-4	0.678	UTR_3_PRIME CG3921
3R	4985205	3R_4985205_SNP [dm3] 3R_9159483_SNP [dm6]	A	C	2.481e^-4	0.678	INTRON pum
3R	15725284	3R_15725284_SNP [dm3] 3R_19899562_SNP [dm6]	T	C	2.488e^-4	0.678	UTR_3_PRIME CG4538 DOWNSTREAM CG4733 INTRON CG4538	TF binding site mE1_TFBS_cad
3R	16174571	3R_16174571_SNP [dm3] 3R_20348849_SNP [dm6]	G	A	2.488e^-4	0.678	INTERGENIC
3L	22746333	3L_22746333_SNP [dm3] 3L_22753233_SNP [dm6]	G	T	2.489e^-4	0.678	INTRON SPoCk
2L	3181433	2L_3181433_SNP [dm3] 2L_3181433_SNP [dm6]	T	G	2.491e^-4	0.678	INTRON CG34393
3R	4992909	3R_4992909_SNP [dm3] 3R_9167187_SNP [dm6]	C	T	2.493e^-4	0.678	INTRON pum
2L	14426306	2L_14426306_SNP [dm3] 2L_14426306_SNP [dm6]	G	T	2.495e^-4	0.678	INTERGENIC
2L	11012497	2L_11012497_DEL [dm3] 2L_11012497_DEL [dm6]	TA	T	2.497e^-4	0.678	DOWNSTREAM dUTPase & 1 other INTERGENIC
2L	9082347	2L_9082347_SNP [dm3] 2L_9082347_SNP [dm6]	C	A	2.498e^-4	0.678	INTERGENIC
3L	21724981	3L_21724981_SNP [dm3] 3L_21731881_SNP [dm6]	C	G	2.499e^-4	0.678	UPSTREAM CG14569 DOWNSTREAM CG14568 INTERGENIC
3R	16030143	3R_16030143_SNP [dm3] 3R_20204421_SNP [dm6]	C	T	2.501e^-4	0.678	UPSTREAM Nlg4 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	15466073	3R_15466073_SNP [dm3] 3R_19640351_SNP [dm6]	G	A	2.508e^-4	0.678	INTRON subdued
3R	26153742	3R_26153742_SNP [dm3] 3R_30328020_SNP [dm6]	T	C	2.541e^-4	0.678	INTRON hdc
3R	4774612	3R_4774612_SNP [dm3] 3R_8948890_SNP [dm6]	A	G	2.545e^-4	0.678	INTERGENIC
3L	13030519	3L_13030519_SNP [dm3] 3L_13037419_SNP [dm6]	A	T	2.546e^-4	0.678	SPLICE_SITE_REGION SRm160 DOWNSTREAM CG17672 INTRON SRm160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	2627927	X_2627927_SNP [dm3] X_2733894_SNP [dm6]	T	C	2.552e^-4	0.678	SYNONYMOUS_CODING CG2712 DOWNSTREAM crm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1604254	3R_1604254_SNP [dm3] 3R_5778532_SNP [dm6]	T	G	2.557e^-4	0.678	UPSTREAM CG2082 & 1 other INTRON CG2082	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13179309	3R_13179309_SNP [dm3] 3R_17353587_SNP [dm6]	A	G	2.563e^-4	0.678	INTRON beat-IIa
3L	18617123	3L_18617123_SNP [dm3] 3L_18624023_SNP [dm6]	G	T	2.570e^-4	0.678	SYNONYMOUS_CODING bora	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	15466057	3R_15466057_SNP [dm3] 3R_19640335_SNP [dm6]	T	A	2.571e^-4	0.678	INTRON subdued
2L	11479901	2L_11479901_SNP [dm3] 2L_11479901_SNP [dm6]	A	G	2.586e^-4	0.678	INTERGENIC
2L	3422555	2L_3422555_SNP [dm3] 2L_3422555_SNP [dm6]	G	A	2.591e^-4	0.678	INTRON pgant2
3R	18249849	3R_18249849_SNP [dm3] 3R_22424127_SNP [dm6]	T	C	2.597e^-4	0.678	DOWNSTREAM mats INTRON pinta
3L	6897698	3L_6897698_SNP [dm3] 3L_6904598_SNP [dm6]	A	C	2.605e^-4	0.678	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7104006	3L_7104006_SNP [dm3] 3L_7110906_SNP [dm6]	G	T	2.612e^-4	0.678	INTRON form3
3R	10440337	3R_10440337_SNP [dm3] 3R_14614615_SNP [dm6]	G	T	2.612e^-4	0.678	INTRON CG14853
3L	10047858	3L_10047858_SNP [dm3] 3L_10054758_SNP [dm6]	A	C	2.615e^-4	0.678	INTRON dpr6
3R	12463949	3R_12463949_SNP [dm3] 3R_16638227_SNP [dm6]	C	A	2.617e^-4	0.678	UTR_3_PRIME Fas1 DOWNSTREAM Fas1 INTRON Fas1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11639857	3L_11639857_SNP [dm3] 3L_11646757_SNP [dm6]	C	T	2.623e^-4	0.678	NON_SYNONYMOUS_CODING RIOK1 UPSTREAM CG6071
2L	13281509	2L_13281509_SNP [dm3] 2L_13281509_SNP [dm6]	A	G	2.626e^-4	0.678	SYNONYMOUS_CODING CG44085 INTRON CG44085
2L	6112786	2L_6112786_SNP [dm3] 2L_6112786_SNP [dm6]	G	A	2.627e^-4	0.678	INTRON stai
3L	13172887	3L_13172887_SNP [dm3] 3L_13179787_SNP [dm6]	C	T	2.635e^-4	0.678	INTERGENIC
3R	6567620	3R_6567620_SNP [dm3] 3R_10741898_SNP [dm6]	A	G	2.635e^-4	0.678	SYNONYMOUS_CODING TkR86C
X	20458774	X_20458774_SNP [dm3] X_20587747_SNP [dm6]	A	T	2.635e^-4	0.678	INTERGENIC
3R	24363961	3R_24363961_SNP [dm3] 3R_28538239_SNP [dm6]	A	T	2.636e^-4	0.678	INTRON Ppn
3R	4871980	3R_4871980_SNP [dm3] 3R_9046258_SNP [dm6]	C	A	2.653e^-4	0.678	INTRON Nmdmc & 1 other
3L	1850349	3L_1850349_SNP [dm3] 3L_1850349_SNP [dm6]	C	A	2.654e^-4	0.678	DOWNSTREAM CG13936 INTERGENIC
3R	15466067	3R_15466067_SNP [dm3] 3R_19640345_SNP [dm6]	A	C	2.656e^-4	0.678	INTRON subdued
3R	11491503	3R_11491503_SNP [dm3] 3R_15665781_SNP [dm6]	G	A	2.660e^-4	0.678	UPSTREAM pxb INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Trl
2R	4921508	2R_4921508_SNP [dm3] 2R_9034003_SNP [dm6]	T	C	2.670e^-4	0.678	INTERGENIC
2L	17676161	2L_17676161_SNP [dm3] 2L_17676161_SNP [dm6]	C	A	2.676e^-4	0.678	INTRON CadN
2R	13932807	2R_13932807_SNP [dm3] 2R_18045302_SNP [dm6]	C	T	2.677e^-4	0.678	UPSTREAM CG5770 INTERGENIC
3R	13388662	3R_13388662_SNP [dm3] 3R_17562940_SNP [dm6]	C	T	2.681e^-4	0.678	INTRON Hmx
2L	18794005	2L_18794005_SNP [dm3] 2L_18794005_SNP [dm6]	G	C	2.686e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16865889	2R_16865889_SNP [dm3] 2R_20978384_SNP [dm6]	G	C	2.695e^-4	0.678	UTR_5_PRIME CG15650 UPSTREAM CG9313 & 1 other DOWNSTREAM CG9344
2R	19134917	2R_19134917_SNP [dm3] 2R_23247394_SNP [dm6]	A	T	2.700e^-4	0.678	SYNONYMOUS_CODING RpL22-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4621517	X_4621517_SNP [dm3] X_4727484_SNP [dm6]	C	G	2.710e^-4	0.678	SYNONYMOUS_CODING Proc-R
2R	10420411	2R_10420411_SNP [dm3] 2R_14532906_SNP [dm6]	A	G	2.710e^-4	0.678	INTRON ttv
3R	23021243	3R_23021243_SNP [dm3] 3R_27195521_SNP [dm6]	C	T	2.722e^-4	0.678	INTERGENIC	regulatory region REDfly_CRMs
2R	13932121	2R_13932121_SNP [dm3] 2R_18044616_SNP [dm6]	T	G	2.724e^-4	0.678	SPLICE_SITE_REGION CG5770 UPSTREAM CG5773 INTRON CG5770
2L	16045056	2L_16045056_SNP [dm3] 2L_16045056_SNP [dm6]	C	A	2.729e^-4	0.678	INTRON BicC & 1 other
3R	4998137	3R_4998137_SNP [dm3] 3R_9172415_SNP [dm6]	T	A	2.729e^-4	0.678	INTRON pum	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	23608180	3L_23608180_SNP [dm3] 3L_23615080_SNP [dm6]	C	A	2.730e^-4	0.678	INTRON AGO3
3R	6662754	3R_6662754_SNP [dm3] 3R_10837032_SNP [dm6]	C	T	2.730e^-4	0.678	INTRON Cad86C
3L	7713012	3L_7713012_SNP [dm3] 3L_7719912_SNP [dm6]	G	A	2.734e^-4	0.678	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
X	16035984	X_16035984_SNP [dm3] X_16141951_SNP [dm6]	C	A	2.748e^-4	0.678	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
3R	4867944	3R_4867944_SNP [dm3] 3R_9042222_SNP [dm6]	G	T	2.752e^-4	0.678	UTR_3_PRIME hyx DOWNSTREAM Nmdmc
3L	15142588	3L_15142588_SNP [dm3] 3L_15149488_SNP [dm6]	A	G	2.761e^-4	0.678	INTRON FucTA
3L	9545483	3L_9545483_SNP [dm3] 3L_9552383_SNP [dm6]	C	A	2.762e^-4	0.678	INTRON CG42673
3L	13426058	3L_13426058_INS [dm3] 3L_13432958_INS [dm6]	A	AACACTA	2.763e^-4	0.678	UPSTREAM tRNA:V4:70BCb DOWNSTREAM tRNA:V4:70BCa INTRON CG10713
3L	21748776	3L_21748776_SNP [dm3] 3L_21755676_SNP [dm6]	G	T	2.764e^-4	0.678	INTRON Syn1
X	16416524	X_16416524_SNP [dm3] X_16522491_SNP [dm6]	A	C	2.773e^-4	0.678	DOWNSTREAM Cnx14D INTRON para
X	10236366	X_10236366_SNP [dm3] X_10342333_SNP [dm6]	C	T	2.774e^-4	0.678	INTRON CG43740
3L	12500634	3L_12500634_SNP [dm3] 3L_12507534_SNP [dm6]	T	C	2.781e^-4	0.678	SYNONYMOUS_CODING CG10654 DOWNSTREAM sti	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3159963	2L_3159963_SNP [dm3] 2L_3159963_SNP [dm6]	A	T	2.781e^-4	0.678	UTR_5_PRIME gkt UPSTREAM Mad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	4704722	3R_4704722_SNP [dm3] 3R_8879000_SNP [dm6]	C	T	2.783e^-4	0.678	INTRON pyd	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1130583	3L_1130583_SNP [dm3] 3L_1130583_SNP [dm6]	T	A	2.789e^-4	0.678	INTERGENIC	regulatory region REDfly_CRMs
2L	18695556	2L_18695556_SNP [dm3] 2L_18695556_SNP [dm6]	G	A	2.789e^-4	0.678	UTR_5_PRIME CG10383 UPSTREAM CG10338 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	22710580	3L_22710580_SNP [dm3] 3L_22717480_SNP [dm6]	T	A	2.793e^-4	0.678	UPSTREAM CG32452 & 1 other INTRON ArfGAP3	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10895054	3L_10895054_SNP [dm3] 3L_10901954_SNP [dm6]	A	T	2.798e^-4	0.678	INTERGENIC
3L	10486077	3L_10486077_SNP [dm3] 3L_10492977_SNP [dm6]	T	C	2.800e^-4	0.678	DOWNSTREAM S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19683084	2R_19683084_SNP [dm3] 2R_23795561_SNP [dm6]	T	C	2.800e^-4	0.678	INTRON CG9850
3L	5645530	3L_5645530_SNP [dm3] 3L_5652430_SNP [dm6]	T	C	2.801e^-4	0.678	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	1262393	3L_1262393_SNP [dm3] 3L_1262393_SNP [dm6]	G	A	2.803e^-4	0.678	INTRON CG9134
3L	7489527	3L_7489527_SNP [dm3] 3L_7496427_SNP [dm6]	C	T	2.805e^-4	0.678	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
3R	4790659	3R_4790659_SNP [dm3] 3R_8964937_SNP [dm6]	T	C	2.810e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12337467	2L_12337467_SNP [dm3] 2L_12337467_SNP [dm6]	T	A	2.811e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8546588	2R_8546588_SNP [dm3] 2R_12659083_SNP [dm6]	C	T	2.817e^-4	0.678	DOWNSTREAM nemy INTRON CG8646	TF binding site mE1_TFBS_cad
3R	14465583	3R_14465583_SNP [dm3] 3R_18639861_SNP [dm6]	C	G	2.823e^-4	0.678	INTRON qin & 1 other
3L	21729918	3L_21729918_DEL [dm3] 3L_21736818_DEL [dm6]	ACC	A	2.840e^-4	0.678	DOWNSTREAM CR43888 & 1 other INTERGENIC
2R	15120398	2R_15120398_SNP [dm3] 2R_19232893_SNP [dm6]	A	T	2.841e^-4	0.678	INTRON cora	TF binding site mE1_TFBS_HSA
3L	10842600	3L_10842600_SNP [dm3] 3L_10849500_SNP [dm6]	A	G	2.843e^-4	0.678	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	7456560	2L_7456560_SNP [dm3] 2L_7456560_SNP [dm6]	A	C	2.845e^-4	0.678	UPSTREAM Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20396950	X_20396950_SNP [dm3] X_20525923_SNP [dm6]	C	A	2.865e^-4	0.678	UPSTREAM Tak1 INTERGENIC	transposable element FlyBase
2L	14236915	2L_14236915_SNP [dm3] 2L_14236915_SNP [dm6]	C	G	2.866e^-4	0.678	DOWNSTREAM CR44728 INTERGENIC
X	21835870	X_21835870_SNP [dm3] X_22434035_SNP [dm6]	C	A	2.866e^-4	0.678	INTERGENIC	transposable element FlyBase
3R	19355323	3R_19355323_SNP [dm3] 3R_23529601_SNP [dm6]	A	T	2.869e^-4	0.678	UPSTREAM CG10175 INTRON CG10175
X	3180098	X_3180098_SNP [dm3] X_3286065_SNP [dm6]	C	A	2.881e^-4	0.678	INTRON dnc
3R	9879702	3R_9879702_SNP [dm3] 3R_14053980_SNP [dm6]	C	G	2.885e^-4	0.678	INTERGENIC
3R	18424625	3R_18424625_SNP [dm3] 3R_22598903_SNP [dm6]	G	A	2.889e^-4	0.678	INTRON Efa6	TF binding site mE1_TFBS_Trl
2L	14124435	2L_14124435_SNP [dm3] 2L_14124435_SNP [dm6]	G	A	2.891e^-4	0.678	INTERGENIC
2R	17643809	2R_17643809_SNP [dm3] 2R_21756304_SNP [dm6]	C	A	2.893e^-4	0.678	INTERGENIC
3R	22399272	3R_22399272_SNP [dm3] 3R_26573550_SNP [dm6]	C	T	2.896e^-4	0.678	SYNONYMOUS_CODING scrib INTRON scrib
2R	7067511	2R_7067511_SNP [dm3] 2R_11180006_SNP [dm6]	A	G	2.897e^-4	0.678	INTRON shn
2L	10945098	2L_10945098_SNP [dm3] 2L_10945098_SNP [dm6]	A	G	2.902e^-4	0.678	INTRON dpr2
2R	7067458	2R_7067458_SNP [dm3] 2R_11179953_SNP [dm6]	A	T	2.902e^-4	0.678	INTRON shn
2L	7456589	2L_7456589_MNP [dm3] 2L_7456589_MNP [dm6]	AAG	GTA	2.909e^-4	0.678	UPSTREAM Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14142863	3L_14142863_SNP [dm3] 3L_14149763_SNP [dm6]	A	G	2.911e^-4	0.678	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	14580857	3L_14580857_SNP [dm3] 3L_14587757_SNP [dm6]	T	C	2.913e^-4	0.678	INTRON HGTX
3L	1932559	3L_1932559_SNP [dm3] 3L_1932559_SNP [dm6]	A	G	2.920e^-4	0.678	INTRON Dbx	TF binding site mE1_TFBS_chinmo
X	6306793	X_6306793_SNP [dm3] X_6412760_SNP [dm6]	G	A	2.923e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18836793	3L_18836793_SNP [dm3] 3L_18843693_SNP [dm6]	A	C	2.924e^-4	0.678	DOWNSTREAM CR32027 INTRON Indy
3L	14585958	3L_14585958_SNP [dm3] 3L_14592858_SNP [dm6]	C	T	2.924e^-4	0.678	INTRON HGTX	TF binding site BDTNP1_TFBS_da
2R	12327083	2R_12327083_SNP [dm3] 2R_16439578_SNP [dm6]	G	A	2.927e^-4	0.678	INTERGENIC
2L	2475258	2L_2475258_SNP [dm3] 2L_2475258_SNP [dm6]	C	T	2.928e^-4	0.678	INTERGENIC	regulatory region REDfly_CRMs
3L	14052948	3L_14052948_SNP [dm3] 3L_14059848_SNP [dm6]	A	G	2.934e^-4	0.678	INTRON CG32138
2L	11320518	2L_11320518_SNP [dm3] 2L_11320518_SNP [dm6]	G	A	2.938e^-4	0.678	INTERGENIC
3L	5567335	3L_5567335_SNP [dm3] 3L_5574235_SNP [dm6]	T	G	2.938e^-4	0.678	INTRON Msr-110
2L	3804333	2L_3804333_INS [dm3] 2L_3804333_INS [dm6]	A	AAA	2.942e^-4	0.678	INTRON Reph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11943323	2L_11943323_INS [dm3] 2L_11943323_INS [dm6]	A	GTTTTGGTCGGTTGTAG...	2.942e^-4	0.678	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
3R	10872955	3R_10872955_DEL [dm3] 3R_15047233_DEL [dm6]	CA	C	2.942e^-4	0.678	INTERGENIC
2L	4749980	2L_4749980_SNP [dm3] 2L_4749980_SNP [dm6]	A	C	2.943e^-4	0.678	INTRON CG15630
3R	4856246	3R_4856246_SNP [dm3] 3R_9030524_SNP [dm6]	A	G	2.947e^-4	0.678	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5625951	2R_5625951_SNP [dm3] 2R_9738446_SNP [dm6]	C	T	2.947e^-4	0.678	INTRON sqa
3R	7097301	3R_7097301_SNP [dm3] 3R_11271579_SNP [dm6]	C	G	2.948e^-4	0.678	SPLICE_SITE_REGION CR31386 EXON CR31386
3R	15107107	3R_15107107_SNP [dm3] 3R_19281385_SNP [dm6]	A	G	2.955e^-4	0.678	INTERGENIC
3R	15194508	3R_15194508_SNP [dm3] 3R_19368786_SNP [dm6]	T	A	2.955e^-4	0.678	DOWNSTREAM Ino80 INTERGENIC
2L	12592685	2L_12592685_SNP [dm3] 2L_12592685_SNP [dm6]	T	A	2.963e^-4	0.678	INTRON nub
2R	5827538	2R_5827538_SNP [dm3] 2R_9940033_SNP [dm6]	T	C	2.966e^-4	0.678	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5827543	2R_5827543_SNP [dm3] 2R_9940038_SNP [dm6]	G	A	2.966e^-4	0.678	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11204723	X_11204723_SNP [dm3] X_11310690_SNP [dm6]	A	T	2.968e^-4	0.678	SYNONYMOUS_CODING Ir10a
X	14792042	X_14792042_SNP [dm3] X_14898009_SNP [dm6]	T	A	2.970e^-4	0.678	INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11931068	2L_11931068_SNP [dm3] 2L_11931068_SNP [dm6]	G	T	2.980e^-4	0.678	INTERGENIC
2L	934780	2L_934780_SNP [dm3] 2L_934780_SNP [dm6]	G	A	2.980e^-4	0.678	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10660272	3R_10660272_INS [dm3] 3R_14834550_INS [dm6]	G	GCCATGGTG	2.982e^-4	0.678	INTRON btsz
2L	11943326	2L_11943326_SNP [dm3] 2L_11943326_SNP [dm6]	A	C	2.985e^-4	0.678	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
3R	26726611	3R_26726611_SNP [dm3] 3R_30900889_SNP [dm6]	A	G	2.987e^-4	0.678	DOWNSTREAM Cyp4c3 INTRON CG33483
3R	14992527	3R_14992527_SNP [dm3] 3R_19166805_SNP [dm6]	T	G	2.991e^-4	0.678	INTRON sqz	TF binding site BDTNP1_TFBS_dl
3L	10049952	3L_10049952_SNP [dm3] 3L_10056852_SNP [dm6]	C	A	2.992e^-4	0.678	INTRON dpr6
3R	14388602	3R_14388602_SNP [dm3] 3R_18562880_SNP [dm6]	C	A	2.995e^-4	0.678	INTERGENIC
3R	20248672	3R_20248672_SNP [dm3] 3R_24422950_SNP [dm6]	T	A	2.999e^-4	0.678	INTRON nAChRalpha1
3L	1263692	3L_1263692_SNP [dm3] 3L_1263692_SNP [dm6]	C	A	3.004e^-4	0.678	INTRON CG9134
2L	14113580	2L_14113580_SNP [dm3] 2L_14113580_SNP [dm6]	G	A	3.010e^-4	0.678	INTERGENIC
2R	19569678	2R_19569678_SNP [dm3] 2R_23682155_SNP [dm6]	G	T	3.019e^-4	0.678	NON_SYNONYMOUS_CODING St1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23960377	3R_23960377_SNP [dm3] 3R_28134655_SNP [dm6]	C	G	3.021e^-4	0.678	INTERGENIC
3L	4369800	3L_4369800_SNP [dm3] 3L_4369800_SNP [dm6]	T	C	3.024e^-4	0.678	INTRON DopEcR
X	2833057	X_2833057_SNP [dm3] X_2939024_SNP [dm6]	C	T	3.037e^-4	0.678	UTR_5_PRIME CG14420 DOWNSTREAM CG3598 INTRON kirre
X	5702569	X_5702569_SNP [dm3] X_5808536_SNP [dm6]	A	T	3.038e^-4	0.678	UPSTREAM Prosbeta2R1 INTERGENIC
2L	7969941	2L_7969941_SNP [dm3] 2L_7969941_SNP [dm6]	A	G	3.038e^-4	0.678	INTRON Snoo
3R	4854672	3R_4854672_SNP [dm3] 3R_9028950_SNP [dm6]	T	A	3.038e^-4	0.678	INTRON neur	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10422027	2R_10422027_SNP [dm3] 2R_14534522_SNP [dm6]	C	A	3.038e^-4	0.678	INTRON ttv
2L	9468799	2L_9468799_SNP [dm3] 2L_9468799_SNP [dm6]	C	A	3.045e^-4	0.678	INTERGENIC
2L	12498166	2L_12498166_SNP [dm3] 2L_12498166_SNP [dm6]	T	A	3.048e^-4	0.678	UPSTREAM t-cup INTRON bun
2L	18927460	2L_18927460_SNP [dm3] 2L_18927460_SNP [dm6]	T	C	3.050e^-4	0.678	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	17206989	X_17206989_SNP [dm3] X_17312956_SNP [dm6]	C	T	3.061e^-4	0.678	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6893984	3L_6893984_SNP [dm3] 3L_6900884_SNP [dm6]	C	A	3.071e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	9599981	3L_9599981_SNP [dm3] 3L_9606881_SNP [dm6]	T	A	3.075e^-4	0.678	INTRON CG3280
3L	22641526	3L_22641526_SNP [dm3] 3L_22648426_SNP [dm6]	C	A	3.078e^-4	0.678	NON_SYNONYMOUS_CODING CG33769 UPSTREAM CG33770 & 1 other DOWNSTREAM CG33768
3L	10048839	3L_10048839_SNP [dm3] 3L_10055739_SNP [dm6]	T	C	3.083e^-4	0.678	INTRON dpr6
3R	4770365	3R_4770365_SNP [dm3] 3R_8944643_SNP [dm6]	C	T	3.087e^-4	0.678	NON_SYNONYMOUS_CODING CG11964	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	12661166	2L_12661166_SNP [dm3] 2L_12661166_SNP [dm6]	C	T	3.089e^-4	0.678	INTRON pdm2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	7712863	3R_7712863_SNP [dm3] 3R_11887141_SNP [dm6]	T	A	3.089e^-4	0.678	UTR_5_PRIME mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11311277	3R_11311277_SNP [dm3] 3R_15485555_SNP [dm6]	G	A	3.089e^-4	0.678	NON_SYNONYMOUS_CODING Trissin UPSTREAM CG5205 & 1 other DOWNSTREAM Rh6	TF binding site mE1_TFBS_HSA
3L	21760918	3L_21760918_DEL [dm3] 3L_21767818_DEL [dm6]	AGTAGGTACAA...	A	3.090e^-4	0.678	INTRON Syn1 & 1 other
3L	14323368	3L_14323368_SNP [dm3] 3L_14330268_SNP [dm6]	G	T	3.091e^-4	0.678	DOWNSTREAM CG13482 INTRON fz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13157066	2L_13157066_SNP [dm3] 2L_13157066_SNP [dm6]	A	C	3.093e^-4	0.678	INTERGENIC
3L	13172864	3L_13172864_SNP [dm3] 3L_13179764_SNP [dm6]	A	G	3.100e^-4	0.678	INTERGENIC
3R	15466104	3R_15466104_SNP [dm3] 3R_19640382_SNP [dm6]	T	G	3.101e^-4	0.678	INTRON subdued
2R	13932114	2R_13932114_SNP [dm3] 2R_18044609_SNP [dm6]	C	G	3.101e^-4	0.678	UPSTREAM CG5773 INTRON CG5770
3R	4689041	3R_4689041_SNP [dm3] 3R_8863319_SNP [dm6]	T	C	3.104e^-4	0.678	DOWNSTREAM tRNA:R:85Cb INTRON pyd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	23602513	3L_23602513_SNP [dm3] 3L_23609413_SNP [dm6]	G	C	3.105e^-4	0.678	INTRON AGO3	transposable element FlyBase
3R	13831672	3R_13831672_SNP [dm3] 3R_18005950_SNP [dm6]	G	A	3.107e^-4	0.678	INTRON cpo
2R	8554978	2R_8554978_SNP [dm3] 2R_12667473_SNP [dm6]	G	A	3.108e^-4	0.678	INTRON nemy
3L	10027527	3L_10027527_SNP [dm3] 3L_10034427_SNP [dm6]	C	T	3.110e^-4	0.678	INTRON dpr6
2L	18709659	2L_18709659_SNP [dm3] 2L_18709659_SNP [dm6]	G	A	3.112e^-4	0.678	NON_SYNONYMOUS_CODING Grip71 UPSTREAM Faf	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	7031980	3L_7031980_DEL [dm3] 3L_7038880_DEL [dm6]	GGTGGCTC	T	3.117e^-4	0.678	INTRON Mp
3R	14397432	3R_14397432_SNP [dm3] 3R_18571710_SNP [dm6]	C	T	3.120e^-4	0.678	INTERGENIC
3L	12924016	3L_12924016_SNP [dm3] 3L_12930916_SNP [dm6]	G	T	3.123e^-4	0.678	INTERGENIC
3L	15651273	3L_15651273_SNP [dm3] 3L_15658173_SNP [dm6]	C	T	3.125e^-4	0.678	UPSTREAM Eig71Ef DOWNSTREAM Eig71Eh & 1 other INTERGENIC
2L	8302351	2L_8302351_SNP [dm3] 2L_8302351_SNP [dm6]	A	G	3.129e^-4	0.678	INTRON wol	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2R	20569061	2R_20569061_SNP [dm3] 2R_24681538_SNP [dm6]	G	A	3.132e^-4	0.678	INTRON Mmp1
X	15060003	X_15060003_SNP [dm3] X_15165970_SNP [dm6]	A	G	3.133e^-4	0.678	INTERGENIC
3L	6893988	3L_6893988_SNP [dm3] 3L_6900888_SNP [dm6]	C	A	3.143e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	3647439	2L_3647439_SNP [dm3] 2L_3647439_SNP [dm6]	C	G	3.152e^-4	0.678	INTRON for
3L	3902231	3L_3902231_SNP [dm3] 3L_3902231_SNP [dm6]	T	G	3.152e^-4	0.678	UPSTREAM Ubi-p63E INTRON Ubi-p63E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	26404143	3R_26404143_SNP [dm3] 3R_30578421_SNP [dm6]	C	G	3.153e^-4	0.678	UTR_3_PRIME tmod
3R	20688456	3R_20688456_DEL [dm3] 3R_24862734_DEL [dm6]	TT	T	3.153e^-4	0.678	UPSTREAM CG7016 & 1 other INTERGENIC
3R	7601563	3R_7601563_SNP [dm3] 3R_11775841_SNP [dm6]	C	T	3.155e^-4	0.678	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19391613	3L_19391613_SNP [dm3] 3L_19398513_SNP [dm6]	C	T	3.158e^-4	0.678	INTRON CG32206
3R	21426319	3R_21426319_SNP [dm3] 3R_25600597_SNP [dm6]	C	A	3.161e^-4	0.678	SYNONYMOUS_CODING msi INTRON ymp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26806717	3R_26806717_SNP [dm3] 3R_30980995_SNP [dm6]	C	T	3.165e^-4	0.678	INTRON 5-HT7
2L	11149783	2L_11149783_SNP [dm3] 2L_11149783_SNP [dm6]	C	T	3.169e^-4	0.678	UPSTREAM Gyc32E INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	7814038	3R_7814038_SNP [dm3] 3R_11988316_SNP [dm6]	T	A	3.172e^-4	0.678	INTRON mfas
2L	16411192	2L_16411192_SNP [dm3] 2L_16411192_SNP [dm6]	T	C	3.174e^-4	0.678	INTRON CG5888
X	20398399	X_20398399_SNP [dm3] X_20527372_SNP [dm6]	A	C	3.178e^-4	0.678	UPSTREAM CG42579 INTERGENIC	transposable element FlyBase
3R	14552025	3R_14552025_DEL [dm3] 3R_18726303_DEL [dm6]	TAT	T	3.178e^-4	0.678	INTRON Cha & 1 other
2R	14623534	2R_14623534_SNP [dm3] 2R_18736029_SNP [dm6]	T	G	3.180e^-4	0.678	INTRON Hs3st-A
3R	6064880	3R_6064880_SNP [dm3] 3R_10239158_SNP [dm6]	T	G	3.190e^-4	0.678	INTRON CG42795
2L	16873012	2L_16873012_SNP [dm3] 2L_16873012_SNP [dm6]	C	T	3.190e^-4	0.678	INTRON CR31781
3L	1875766	3L_1875766_SNP [dm3] 3L_1875766_SNP [dm6]	A	G	3.194e^-4	0.678	SYNONYMOUS_CODING dre4 DOWNSTREAM CG13937	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22652173	3L_22652173_SNP [dm3] 3L_22659073_SNP [dm6]	G	C	3.195e^-4	0.678	INTERGENIC
3R	7732618	3R_7732618_SNP [dm3] 3R_11906896_SNP [dm6]	G	C	3.197e^-4	0.678	INTRON Cad87A
2L	20911558	2L_20911558_SNP [dm3] 2L_20911558_SNP [dm6]	T	C	3.203e^-4	0.678	INTRON sky & 1 other
3L	13172850	3L_13172850_SNP [dm3] 3L_13179750_SNP [dm6]	G	A	3.208e^-4	0.678	INTERGENIC
3L	15236828	3L_15236828_SNP [dm3] 3L_15243728_SNP [dm6]	T	C	3.212e^-4	0.678	DOWNSTREAM Tollo INTERGENIC
3R	19192904	3R_19192904_SNP [dm3] 3R_23367182_SNP [dm6]	A	C	3.213e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14992525	3R_14992525_SNP [dm3] 3R_19166803_SNP [dm6]	T	G	3.214e^-4	0.678	INTRON sqz	TF binding site BDTNP1_TFBS_dl
3R	8507405	3R_8507405_SNP [dm3] 3R_12681683_SNP [dm6]	G	T	3.215e^-4	0.678	UPSTREAM Cyp313a4 DOWNSTREAM kar INTERGENIC
3L	23601204	3L_23601204_SNP [dm3] 3L_23608104_SNP [dm6]	T	A	3.220e^-4	0.678	INTRON AGO3
2R	18717142	2R_18717142_SNP [dm3] 2R_22829619_SNP [dm6]	C	G	3.222e^-4	0.678	UPSTREAM CG30272 DOWNSTREAM CG30274 & 1 other INTERGENIC
2R	18550394	2R_18550394_SNP [dm3] 2R_22662889_SNP [dm6]	T	C	3.224e^-4	0.678	UPSTREAM CG4250 INTRON CG42566
2L	12317016	2L_12317016_SNP [dm3] 2L_12317016_SNP [dm6]	T	A	3.229e^-4	0.678	UPSTREAM CR45282 EXON CR45283
2L	4710173	2L_4710173_SNP [dm3] 2L_4710173_SNP [dm6]	G	A	3.229e^-4	0.678	INTRON CG34351
2L	16293938	2L_16293938_MNP [dm3] 2L_16293938_MNP [dm6]	GAA	AGC	3.236e^-4	0.678	UPSTREAM CG13258 & 2 others INTERGENIC
2L	13839843	2L_13839843_SNP [dm3] 2L_13839843_SNP [dm6]	T	C	3.237e^-4	0.678	UTR_3_PRIME CG33307 DOWNSTREAM CG33307 INTRON CenG1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7144320	2L_7144320_SNP [dm3] 2L_7144320_SNP [dm6]	C	A	3.239e^-4	0.678	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13799919	X_13799919_SNP [dm3] X_13905886_SNP [dm6]	A	C	3.242e^-4	0.678	INTRON mamo	TF binding site BDTNP1_TFBS_da
2L	2519841	2L_2519841_INS [dm3] 2L_2519841_INS [dm6]	G	TA	3.248e^-4	0.678	INTERGENIC
3L	1577152	3L_1577152_SNP [dm3] 3L_1577152_SNP [dm6]	T	C	3.254e^-4	0.678	DOWNSTREAM CG12004 INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	6897677	3L_6897677_SNP [dm3] 3L_6904577_SNP [dm6]	A	G	3.256e^-4	0.678	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4741600	3R_4741600_SNP [dm3] 3R_8915878_SNP [dm6]	C	T	3.259e^-4	0.678	INTRON pyd	TF binding site BDTNP1_TFBS_twi
3R	24353003	3R_24353003_SNP [dm3] 3R_28527281_SNP [dm6]	A	G	3.262e^-4	0.678	SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_chinmo
3R	4892706	3R_4892706_SNP [dm3] 3R_9066984_SNP [dm6]	A	G	3.263e^-4	0.678	UTR_3_PRIME pum DOWNSTREAM Ada & 1 other
2L	12160642	2L_12160642_SNP [dm3] 2L_12160642_SNP [dm6]	A	C	3.266e^-4	0.678	INTRON CG31760	TF binding site mE1_TFBS_HSA
3R	5707757	3R_5707757_SNP [dm3] 3R_9882035_SNP [dm6]	T	C	3.273e^-4	0.678	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3457387	2L_3457387_SNP [dm3] 2L_3457387_SNP [dm6]	C	T	3.275e^-4	0.678	UTR_5_PRIME Sec5 UPSTREAM Cog3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19812743	3L_19812743_SNP [dm3] 3L_19819643_SNP [dm6]	C	T	3.277e^-4	0.678	SYNONYMOUS_CODING Deaf1	TF binding site mE1_TFBS_chinmo
3L	13425083	3L_13425083_SNP [dm3] 3L_13431983_SNP [dm6]	G	A	3.278e^-4	0.678	INTRON CG10713
2L	12644274	2L_12644274_SNP [dm3] 2L_12644274_SNP [dm6]	G	A	3.287e^-4	0.678	INTRON Ref2
3R	14628694	3R_14628694_SNP [dm3] 3R_18802972_SNP [dm6]	A	G	3.288e^-4	0.678	UTR_3_PRIME CG18208
2R	15659152	2R_15659152_SNP [dm3] 2R_19771647_SNP [dm6]	G	A	3.288e^-4	0.678	UPSTREAM Or56a INTERGENIC
3R	11128991	3R_11128991_SNP [dm3] 3R_15303269_SNP [dm6]	G	A	3.301e^-4	0.678	INTRON Tm1
3L	632792	3L_632792_SNP [dm3] 3L_632792_SNP [dm6]	T	C	3.304e^-4	0.678	EXON CR43334	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	10693321	3L_10693321_DEL [dm3] 3L_10700221_DEL [dm6]	AAT	A	3.310e^-4	0.678	INTERGENIC
3R	4784256	3R_4784256_SNP [dm3] 3R_8958534_SNP [dm6]	T	C	3.311e^-4	0.678	INTRON CG11966	TF binding site mE1_TFBS_cad
3L	22118056	3L_22118056_SNP [dm3] 3L_22124956_SNP [dm6]	C	A	3.313e^-4	0.678	INTERGENIC
3L	10732991	3L_10732991_SNP [dm3] 3L_10739891_SNP [dm6]	G	A	3.318e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	20215325	2R_20215325_SNP [dm3] 2R_24327802_SNP [dm6]	T	A	3.320e^-4	0.678	INTRON CR44810
3R	11128994	3R_11128994_SNP [dm3] 3R_15303272_SNP [dm6]	A	T	3.320e^-4	0.678	INTRON Tm1
2L	3184835	2L_3184835_SNP [dm3] 2L_3184835_SNP [dm6]	C	G	3.321e^-4	0.678	INTRON CG34393
3R	11128996	3R_11128996_SNP [dm3] 3R_15303274_SNP [dm6]	A	G	3.340e^-4	0.678	INTRON Tm1
3L	15775702	3L_15775702_DEL [dm3] 3L_15782602_DEL [dm6]	TAAAAGTTTAGTTCATATTT...	T	3.344e^-4	0.678	INTERGENIC
2L	6038003	2L_6038003_INS [dm3] 2L_6038003_INS [dm6]	T	TCAT	3.347e^-4	0.678	UPSTREAM mtm & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	5560458	3L_5560458_SNP [dm3] 3L_5567358_SNP [dm6]	T	C	3.347e^-4	0.678	UTR_3_PRIME Msr-110 DOWNSTREAM bc10 & 1 other
3R	19193144	3R_19193144_SNP [dm3] 3R_23367422_SNP [dm6]	C	T	3.348e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16937628	3R_16937628_SNP [dm3] 3R_21111906_SNP [dm6]	T	G	3.351e^-4	0.678	INTRON Rab11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16030165	3R_16030165_SNP [dm3] 3R_20204443_SNP [dm6]	C	T	3.354e^-4	0.678	UPSTREAM Nlg4 INTERGENIC	TF binding site mE1_TFBS_Trl
X	20398397	X_20398397_SNP [dm3] X_20527370_SNP [dm6]	T	C	3.356e^-4	0.678	UPSTREAM CG42579 INTERGENIC	transposable element FlyBase
2L	15121426	2L_15121426_SNP [dm3] 2L_15121426_SNP [dm6]	G	A	3.363e^-4	0.678	DOWNSTREAM CR43853 INTERGENIC
3L	6821495	3L_6821495_SNP [dm3] 3L_6828395_SNP [dm6]	T	C	3.364e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22691034	3L_22691034_SNP [dm3] 3L_22697934_SNP [dm6]	A	G	3.365e^-4	0.678	UTR_3_PRIME CG32453 DOWNSTREAM CG32453
2L	15211665	2L_15211665_SNP [dm3] 2L_15211665_SNP [dm6]	A	G	3.367e^-4	0.678	INTERGENIC
3R	4784168	3R_4784168_SNP [dm3] 3R_8958446_SNP [dm6]	A	G	3.374e^-4	0.678	INTRON CG11966	TF binding site mE1_TFBS_cad
X	12151446	X_12151446_SNP [dm3] X_12257413_SNP [dm6]	A	T	3.375e^-4	0.678	INTRON Ten-a
3R	7760866	3R_7760866_SNP [dm3] 3R_11935144_SNP [dm6]	G	A	3.391e^-4	0.678	INTRON Cad87A
X	14874820	X_14874820_SNP [dm3] X_14980787_SNP [dm6]	A	G	3.394e^-4	0.678	INTRON eag
3L	21710700	3L_21710700_SNP [dm3] 3L_21717600_SNP [dm6]	T	A	3.397e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	14281862	3L_14281862_SNP [dm3] 3L_14288762_SNP [dm6]	C	T	3.408e^-4	0.678	INTRON fz
3L	2893776	3L_2893776_INS [dm3] 3L_2893776_INS [dm6]	A	AC	3.409e^-4	0.678	INTERGENIC
3L	14626292	3L_14626292_SNP [dm3] 3L_14633192_SNP [dm6]	C	T	3.409e^-4	0.678	SYNONYMOUS_CODING dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	4765616	3R_4765616_SNP [dm3] 3R_8939894_SNP [dm6]	C	T	3.415e^-4	0.678	INTRON skap
3R	22610221	3R_22610221_SNP [dm3] 3R_26784499_SNP [dm6]	A	G	3.423e^-4	0.678	SYNONYMOUS_CODING CG42790 UPSTREAM CG42789
2L	11155192	2L_11155192_SNP [dm3] 2L_11155192_SNP [dm6]	A	C	3.423e^-4	0.678	DOWNSTREAM Ca-beta INTRON CG6287
2R	19319620	2R_19319620_SNP [dm3] 2R_23432097_SNP [dm6]	C	G	3.430e^-4	0.678	UPSTREAM CG9815 INTRON CG9815
3L	1469048	3L_1469048_SNP [dm3] 3L_1469048_SNP [dm6]	G	C	3.435e^-4	0.678	DOWNSTREAM rho INTRON Ptp61F
X	16932245	X_16932245_SNP [dm3] X_17038212_SNP [dm6]	G	T	3.440e^-4	0.678	INTRON CG45002
2L	18433204	2L_18433204_SNP [dm3] 2L_18433204_SNP [dm6]	G	A	3.441e^-4	0.678	UPSTREAM CR44488 INTERGENIC
3R	5198176	3R_5198176_SNP [dm3] 3R_9372454_SNP [dm6]	C	T	3.442e^-4	0.678	NON_SYNONYMOUS_CODING FER UPSTREAM FER INTRON FER
3L	11661994	3L_11661994_SNP [dm3] 3L_11668894_SNP [dm6]	C	T	3.443e^-4	0.678	INTRON CG32085
2R	4930549	2R_4930549_SNP [dm3] 2R_9043044_SNP [dm6]	G	T	3.453e^-4	0.678	SYNONYMOUS_CODING PPO2 UPSTREAM Ance-4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4979104	3L_4979104_DEL [dm3] 3L_4979104_DEL [dm6]	AAA	A	3.459e^-4	0.678	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	4741406	3R_4741406_SNP [dm3] 3R_8915684_SNP [dm6]	G	A	3.461e^-4	0.678	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7714894	3L_7714894_SNP [dm3] 3L_7721794_SNP [dm6]	C	A	3.472e^-4	0.678	DOWNSTREAM CG7457 & 1 other INTRON CG32373
2R	4484306	2R_4484306_INS [dm3] 2R_8596801_INS [dm6]	C	CTAATAATTAATAATTAATT...	3.477e^-4	0.678	DOWNSTREAM CG8735 INTERGENIC
3R	22861368	3R_22861368_SNP [dm3] 3R_27035646_SNP [dm6]	A	T	3.485e^-4	0.678	INTRON RYa-R	TF binding site BDTNP1_TFBS_da
2L	8700528	2L_8700528_SNP [dm3] 2L_8700528_SNP [dm6]	A	T	3.486e^-4	0.678	UPSTREAM Hnf4 INTRON Hnf4
2L	12498136	2L_12498136_SNP [dm3] 2L_12498136_SNP [dm6]	A	T	3.486e^-4	0.678	UPSTREAM t-cup INTRON bun
2L	5505250	2L_5505250_SNP [dm3] 2L_5505250_SNP [dm6]	T	G	3.486e^-4	0.678	INTERGENIC
X	3012029	X_3012029_SNP [dm3] X_3117996_SNP [dm6]	C	T	3.495e^-4	0.678	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6891674	3L_6891674_SNP [dm3] 3L_6898574_SNP [dm6]	C	T	3.498e^-4	0.678	INTERGENIC
2L	7837374	2L_7837374_DEL [dm3] 2L_7837374_DEL [dm6]	TT	T	3.500e^-4	0.678	INTERGENIC
3R	22998052	3R_22998052_SNP [dm3] 3R_27172330_SNP [dm6]	A	T	3.502e^-4	0.678	UTR_3_PRIME Ser	regulatory region REDfly_CRMs
2L	5016088	2L_5016088_SNP [dm3] 2L_5016088_SNP [dm6]	C	G	3.510e^-4	0.678	SYNONYMOUS_CODING vkg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22996965	3R_22996965_SNP [dm3] 3R_27171243_SNP [dm6]	G	A	3.510e^-4	0.678	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
2L	19088443	2L_19088443_SNP [dm3] 2L_19088443_SNP [dm6]	C	T	3.512e^-4	0.678	INTRON Lim3
2L	12498102	2L_12498102_DEL [dm3] 2L_12498102_DEL [dm6]	TT	T	3.523e^-4	0.678	UPSTREAM t-cup INTRON bun
3R	8987120	3R_8987120_SNP [dm3] 3R_13161398_SNP [dm6]	C	T	3.526e^-4	0.678	INTRON timeout
3R	11882786	3R_11882786_SNP [dm3] 3R_16057064_SNP [dm6]	C	T	3.528e^-4	0.678	INTRON msps
3L	22679217	3L_22679217_SNP [dm3] 3L_22686117_SNP [dm6]	G	C	3.534e^-4	0.678	DOWNSTREAM CG14455 INTERGENIC
3L	12880620	3L_12880620_SNP [dm3] 3L_12887520_SNP [dm6]	G	C	3.536e^-4	0.678	SYNONYMOUS_CODING CG14120
2R	4777932	2R_4777932_SNP [dm3] 2R_8890427_SNP [dm6]	A	G	3.537e^-4	0.678	NON_SYNONYMOUS_CODING CG8272	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_sens
2L	8097172	2L_8097172_SNP [dm3] 2L_8097172_SNP [dm6]	A	T	3.539e^-4	0.678	INTRON Bsg
3L	10693364	3L_10693364_SNP [dm3] 3L_10700264_SNP [dm6]	G	C	3.546e^-4	0.678	INTERGENIC
3L	6898825	3L_6898825_SNP [dm3] 3L_6905725_SNP [dm6]	C	G	3.547e^-4	0.678	INTERGENIC
2L	16802423	2L_16802423_SNP [dm3] 2L_16802423_SNP [dm6]	A	G	3.549e^-4	0.678	SYNONYMOUS_CODING CG13280 DOWNSTREAM Ugt36Bc
2L	12498018	2L_12498018_SNP [dm3] 2L_12498018_SNP [dm6]	T	G	3.558e^-4	0.678	UPSTREAM t-cup INTRON bun
3R	7170415	3R_7170415_SNP [dm3] 3R_11344693_SNP [dm6]	A	C	3.559e^-4	0.678	INTRON pros	TF binding site BDTNP1_TFBS_dl
2R	8485103	2R_8485103_SNP [dm3] 2R_12597598_SNP [dm6]	A	C	3.564e^-4	0.678	INTRON Amph
2L	14545413	2L_14545413_SNP [dm3] 2L_14545413_SNP [dm6]	A	G	3.568e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9599252	3L_9599252_SNP [dm3] 3L_9606152_SNP [dm6]	C	T	3.571e^-4	0.678	SPLICE_SITE_REGION CG3280 INTRON CG3280
2L	12328170	2L_12328170_SNP [dm3] 2L_12328170_SNP [dm6]	C	T	3.573e^-4	0.678	INTERGENIC
X	16469609	X_16469609_SNP [dm3] X_16575576_SNP [dm6]	T	C	3.579e^-4	0.678	INTRON CanA-14F
3R	11892310	3R_11892310_SNP [dm3] 3R_16066588_SNP [dm6]	C	T	3.582e^-4	0.678	SYNONYMOUS_CODING CG10185	TF binding site mE1_TFBS_cad
3R	1972430	3R_1972430_SNP [dm3] 3R_6146708_SNP [dm6]	A	G	3.586e^-4	0.678	INTERGENIC
3L	11585448	3L_11585448_SNP [dm3] 3L_11592348_SNP [dm6]	A	G	3.592e^-4	0.678	DOWNSTREAM CR45672 & 1 other INTERGENIC
2R	14847642	2R_14847642_SNP [dm3] 2R_18960137_SNP [dm6]	G	A	3.592e^-4	0.678	DOWNSTREAM sano INTERGENIC
2L	3892707	2L_3892707_SNP [dm3] 2L_3892707_SNP [dm6]	C	T	3.594e^-4	0.678	INTRON capu
3R	7732716	3R_7732716_SNP [dm3] 3R_11906994_SNP [dm6]	A	T	3.596e^-4	0.678	INTRON Cad87A
3R	20996601	3R_20996601_SNP [dm3] 3R_25170879_SNP [dm6]	A	G	3.599e^-4	0.678	SYNONYMOUS_CODING lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14145195	3R_14145195_SNP [dm3] 3R_18319473_SNP [dm6]	T	C	3.606e^-4	0.678	INTRON CG31235
2R	17843065	2R_17843065_SNP [dm3] 2R_21955560_SNP [dm6]	G	A	3.610e^-4	0.678	UPSTREAM CG13494 INTERGENIC
3L	22719394	3L_22719394_SNP [dm3] 3L_22726294_SNP [dm6]	C	A	3.614e^-4	0.678	UTR_3_PRIME CG14450 DOWNSTREAM mael
3L	21068860	3L_21068860_SNP [dm3] 3L_21075760_SNP [dm6]	G	T	3.615e^-4	0.678	UTR_3_PRIME ko DOWNSTREAM siz
3L	3090491	3L_3090491_SNP [dm3] 3L_3090491_SNP [dm6]	A	C	3.616e^-4	0.678	UPSTREAM snRNA:U5:63BC DOWNSTREAM Cht7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	10048229	3L_10048229_DEL [dm3] 3L_10055129_DEL [dm6]	AA	A	3.616e^-4	0.678	INTRON dpr6
3L	13395357	3L_13395357_SNP [dm3] 3L_13402257_SNP [dm6]	G	T	3.618e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
2R	14623529	2R_14623529_SNP [dm3] 2R_18736024_SNP [dm6]	G	A	3.621e^-4	0.678	INTRON Hs3st-A
3L	5982608	3L_5982608_SNP [dm3] 3L_5989508_SNP [dm6]	A	T	3.622e^-4	0.678	INTERGENIC
3L	6880634	3L_6880634_SNP [dm3] 3L_6887534_SNP [dm6]	T	C	3.629e^-4	0.678	INTERGENIC
2L	2417640	2L_2417640_SNP [dm3] 2L_2417640_SNP [dm6]	G	A	3.633e^-4	0.678	SYNONYMOUS_CODING CG34448 UPSTREAM CG31948 DOWNSTREAM CG34447
2L	18425375	2L_18425375_SNP [dm3] 2L_18425375_SNP [dm6]	G	T	3.633e^-4	0.678	INTERGENIC
3L	6880660	3L_6880660_SNP [dm3] 3L_6887560_SNP [dm6]	T	A	3.637e^-4	0.678	INTERGENIC
3L	10650768	3L_10650768_DEL [dm3] 3L_10657668_DEL [dm6]	GGG	G	3.638e^-4	0.678	INTRON CG32066	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	2070429	3R_2070429_SNP [dm3] 3R_6244707_SNP [dm6]	T	A	3.641e^-4	0.678	INTERGENIC
3R	25936678	3R_25936678_SNP [dm3] 3R_30110956_SNP [dm6]	T	C	3.644e^-4	0.678	INTRON sima
3R	26275163	3R_26275163_SNP [dm3] 3R_30449441_SNP [dm6]	G	A	3.652e^-4	0.678	INTRON aralar1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9822490	3R_9822490_SNP [dm3] 3R_13996768_SNP [dm6]	T	A	3.658e^-4	0.678	INTRON rdx
3L	3090484	3L_3090484_SNP [dm3] 3L_3090484_SNP [dm6]	A	C	3.658e^-4	0.678	UPSTREAM snRNA:U5:63BC DOWNSTREAM Cht7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	10018460	3R_10018460_SNP [dm3] 3R_14192738_SNP [dm6]	G	C	3.669e^-4	0.678	INTRON Dop1R1
3R	6009461	3R_6009461_DEL [dm3] 3R_10183739_DEL [dm6]	GG	G	3.674e^-4	0.678	INTRON CG12814
2L	12907280	2L_12907280_SNP [dm3] 2L_12907280_SNP [dm6]	G	T	3.677e^-4	0.678	INTERGENIC
3L	10693440	3L_10693440_SNP [dm3] 3L_10700340_SNP [dm6]	T	G	3.684e^-4	0.678	INTERGENIC
X	20445089	X_20445089_SNP [dm3] X_20574062_SNP [dm6]	A	T	3.704e^-4	0.678	UPSTREAM CG42580 INTERGENIC
2R	19227209	2R_19227209_SNP [dm3] 2R_23339686_SNP [dm6]	T	A	3.705e^-4	0.678	INTERGENIC
3L	1584730	3L_1584730_SNP [dm3] 3L_1584730_SNP [dm6]	G	A	3.705e^-4	0.678	INTRON CG13917
X	14875133	X_14875133_DEL [dm3] X_14981100_DEL [dm6]	AA	C	3.710e^-4	0.678	INTRON eag
3L	7489462	3L_7489462_SNP [dm3] 3L_7496362_SNP [dm6]	A	G	3.712e^-4	0.678	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
3L	2775730	3L_2775730_SNP [dm3] 3L_2775730_SNP [dm6]	C	A	3.712e^-4	0.678	NON_SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14119259	3R_14119259_SNP [dm3] 3R_18293537_SNP [dm6]	G	A	3.713e^-4	0.678	UPSTREAM l_3_05822 INTRON l_3_05822
3R	6584460	3R_6584460_SNP [dm3] 3R_10758738_SNP [dm6]	A	G	3.713e^-4	0.678	NON_SYNONYMOUS_CODING CG31272 DOWNSTREAM CR45015
2R	17408702	2R_17408702_SNP [dm3] 2R_21521197_SNP [dm6]	G	T	3.717e^-4	0.678	SYNONYMOUS_CODING CG30289 UPSTREAM CG30288
3R	15280997	3R_15280997_SNP [dm3] 3R_19455275_SNP [dm6]	G	C	3.719e^-4	0.678	INTRON CG31221
3L	5645282	3L_5645282_SNP [dm3] 3L_5652182_SNP [dm6]	A	G	3.720e^-4	0.678	DOWNSTREAM Blimp-1 INTERGENIC
2L	20907031	2L_20907031_SNP [dm3] 2L_20907031_SNP [dm6]	C	T	3.724e^-4	0.678	INTRON sky & 1 other
3R	6662518	3R_6662518_SNP [dm3] 3R_10836796_SNP [dm6]	G	A	3.725e^-4	0.678	INTRON Cad86C
2L	2461538	2L_2461538_SNP [dm3] 2L_2461538_SNP [dm6]	A	T	3.736e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	10690258	3L_10690258_SNP [dm3] 3L_10697158_SNP [dm6]	G	A	3.739e^-4	0.678	UPSTREAM NijA INTERGENIC
2L	11943321	2L_11943321_SNP [dm3] 2L_11943321_SNP [dm6]	C	T	3.743e^-4	0.678	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
3R	6882139	3R_6882139_SNP [dm3] 3R_11056417_SNP [dm6]	A	T	3.744e^-4	0.678	INTERGENIC
X	11341625	X_11341625_SNP [dm3] X_11447592_SNP [dm6]	G	A	3.744e^-4	0.678	INTRON Evi5	TF binding site mE1_TFBS_kn
2L	18140199	2L_18140199_SNP [dm3] 2L_18140199_SNP [dm6]	G	A	3.750e^-4	0.678	INTRON Socs36E	TF binding site mE1_TFBS_cad
3L	9753810	3L_9753810_INS [dm3] 3L_9760710_INS [dm6]	T	TT	3.750e^-4	0.678	UPSTREAM CR45407 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	9999471	3R_9999471_SNP [dm3] 3R_14173749_SNP [dm6]	G	T	3.759e^-4	0.678	UTR_3_PRIME Dop1R1
3R	10237881	3R_10237881_SNP [dm3] 3R_14412159_SNP [dm6]	T	C	3.761e^-4	0.678	INTRON cv-c	TF binding site mE1_TFBS_inv

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.573e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1538 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	25502011	3R_25502011_SNP [dm3] 3R_29676289_SNP [dm6]	G	A	5.015e^-7	0.941	SYNONYMOUS_CODING Cap-D2 UPSTREAM Bub3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	15593338	2R_15593338_SNP [dm3] 2R_19705833_SNP [dm6]	A	G	1.855e^-6	1	INTERGENIC	regulatory region REDfly_CRMs
X	15731771	X_15731771_SNP [dm3] X_15837738_SNP [dm6]	T	G	2.398e^-6	1	UPSTREAM CG8565 DOWNSTREAM CG32582 INTERGENIC
3R	19493931	3R_19493931_SNP [dm3] 3R_23668209_SNP [dm6]	A	G	2.889e^-6	1	INTRON CG31145
3R	21261011	3R_21261011_SNP [dm3] 3R_25435289_SNP [dm6]	C	G	3.349e^-6	1	INTRON Fur1
3R	746651	3R_746651_SNP [dm3] 3R_4920929_SNP [dm6]	C	A	3.614e^-6	1	INTRON Cdep
3L	6246042	3L_6246042_SNP [dm3] 3L_6252942_SNP [dm6]	A	T	5.879e^-6	1	INTRON Best2
3R	18535684	3R_18535684_SNP [dm3] 3R_22709962_SNP [dm6]	T	C	8.326e^-6	1	NON_SYNONYMOUS_CODING CG4907 SPLICE_SITE_REGION CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi
3R	11128994	3R_11128994_SNP [dm3] 3R_15303272_SNP [dm6]	A	T	9.737e^-6	1	INTRON Tm1
3R	17612492	3R_17612492_SNP [dm3] 3R_21786770_SNP [dm6]	A	G	1.019e^-5	1	SYNONYMOUS_CODING CASK UPSTREAM CRG
X	15731730	X_15731730_SNP [dm3] X_15837697_SNP [dm6]	T	C	1.051e^-5	1	UPSTREAM CG8565 DOWNSTREAM CG32582 INTERGENIC
3R	14288375	3R_14288375_DEL [dm3] 3R_18462653_DEL [dm6]	TT	T	1.106e^-5	1	INTRON fru
3R	18249849	3R_18249849_SNP [dm3] 3R_22424127_SNP [dm6]	T	C	1.193e^-5	1	DOWNSTREAM mats INTRON pinta
3R	18252460	3R_18252460_SNP [dm3] 3R_22426738_SNP [dm6]	A	G	1.394e^-5	1	SPLICE_SITE_REGION CG13847 INTRON CG13847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	489330	2L_489330_SNP [dm3] 2L_489330_SNP [dm6]	C	T	1.456e^-5	1	INTRON ush
2L	489332	2L_489332_DEL [dm3] 2L_489332_DEL [dm6]	GACACA	G	1.456e^-5	1	INTRON ush
2L	489339	2L_489339_SNP [dm3] 2L_489339_SNP [dm6]	T	A	1.456e^-5	1	INTRON ush
2L	489340	2L_489340_SNP [dm3] 2L_489340_SNP [dm6]	C	T	1.456e^-5	1	INTRON ush
3L	601085	3L_601085_SNP [dm3] 3L_601085_SNP [dm6]	T	A	1.501e^-5	1	INTRON CG13893	TF binding site mE1_TFBS_inv
X	13272841	X_13272841_SNP [dm3] X_13378808_SNP [dm6]	T	C	1.502e^-5	1	SYNONYMOUS_CODING CG1640
3R	25501996	3R_25501996_SNP [dm3] 3R_29676274_SNP [dm6]	A	G	1.548e^-5	1	SYNONYMOUS_CODING Cap-D2 UPSTREAM Bub3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	489326	2L_489326_INS [dm3] 2L_489326_INS [dm6]	C	GT	1.553e^-5	1	INTRON ush
2L	489329	2L_489329_SNP [dm3] 2L_489329_SNP [dm6]	A	T	1.553e^-5	1	INTRON ush
3L	10362779	3L_10362779_SNP [dm3] 3L_10369679_SNP [dm6]	G	T	1.608e^-5	1	INTERGENIC
X	3167412	X_3167412_SNP [dm3] X_3273379_SNP [dm6]	G	A	1.664e^-5	1	INTRON dnc
2R	9823172	2R_9823172_SNP [dm3] 2R_13935667_SNP [dm6]	A	G	1.751e^-5	1	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11128991	3R_11128991_SNP [dm3] 3R_15303269_SNP [dm6]	G	A	1.875e^-5	1	INTRON Tm1
3R	10501277	3R_10501277_SNP [dm3] 3R_14675555_SNP [dm6]	C	A	2.054e^-5	1	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11128996	3R_11128996_SNP [dm3] 3R_15303274_SNP [dm6]	A	G	2.080e^-5	1	INTRON Tm1
3R	6254698	3R_6254698_SNP [dm3] 3R_10428976_SNP [dm6]	C	T	2.159e^-5	1	INTERGENIC
3R	24938752	3R_24938752_SNP [dm3] 3R_29113030_SNP [dm6]	C	A	2.254e^-5	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	1838423	3R_1838423_SNP [dm3] 3R_6012701_SNP [dm6]	A	T	2.263e^-5	1	UPSTREAM CG10280 INTERGENIC
2R	14224382	2R_14224382_SNP [dm3] 2R_18336877_SNP [dm6]	A	G	2.446e^-5	1	INTRON sbb
3R	6662174	3R_6662174_SNP [dm3] 3R_10836452_SNP [dm6]	T	G	2.465e^-5	1	INTRON Cad86C
2L	4400596	2L_4400596_SNP [dm3] 2L_4400596_SNP [dm6]	T	G	2.633e^-5	1	UPSTREAM CG33003 DOWNSTREAM l_2_k05819 INTERGENIC
3L	19812743	3L_19812743_SNP [dm3] 3L_19819643_SNP [dm6]	C	T	2.685e^-5	1	SYNONYMOUS_CODING Deaf1	TF binding site mE1_TFBS_chinmo
3L	6246049	3L_6246049_SNP [dm3] 3L_6252949_SNP [dm6]	T	A	2.685e^-5	1	INTRON Best2
2L	16504424	2L_16504424_SNP [dm3] 2L_16504424_SNP [dm6]	A	G	2.784e^-5	1	INTRON Tpr2
X	15731699	X_15731699_SNP [dm3] X_15837666_SNP [dm6]	G	A	2.791e^-5	1	UPSTREAM CG8565 DOWNSTREAM CG32582 INTERGENIC
2L	2255947	2L_2255947_SNP [dm3] 2L_2255947_SNP [dm6]	T	C	2.880e^-5	1	UPSTREAM Send1 INTERGENIC
3R	17612528	3R_17612528_SNP [dm3] 3R_21786806_SNP [dm6]	G	A	3.165e^-5	1	SYNONYMOUS_CODING CASK UPSTREAM CRG
3R	6662564	3R_6662564_SNP [dm3] 3R_10836842_SNP [dm6]	A	G	3.195e^-5	1	INTRON Cad86C
3R	20332286	3R_20332286_SNP [dm3] 3R_24506564_SNP [dm6]	G	A	3.313e^-5	1	INTERGENIC
3R	26057580	3R_26057580_SNP [dm3] 3R_30231858_SNP [dm6]	C	G	3.418e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_inv
X	16051095	X_16051095_SNP [dm3] X_16157062_SNP [dm6]	C	G	3.609e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	488487	2L_488487_SNP [dm3] 2L_488487_SNP [dm6]	C	T	3.774e^-5	1	INTRON ush	TF binding site mE1_TFBS_Trl
2L	2879909	2L_2879909_SNP [dm3] 2L_2879909_SNP [dm6]	C	T	3.776e^-5	1	DOWNSTREAM CG31950 & 1 other INTRON betaggt-II	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	6246574	3L_6246574_DEL [dm3] 3L_6253474_DEL [dm6]	TT	T	3.777e^-5	1	INTRON Best2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3754810	X_3754810_SNP [dm3] X_3860777_SNP [dm6]	C	G	3.841e^-5	1	EXON roX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25746922	3R_25746922_SNP [dm3] 3R_29921200_SNP [dm6]	A	T	3.848e^-5	1	UPSTREAM trp INTERGENIC
3R	18252458	3R_18252458_SNP [dm3] 3R_22426736_SNP [dm6]	A	G	3.878e^-5	1	SPLICE_SITE_REGION CG13847 INTRON CG13847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14851255	3R_14851255_SNP [dm3] 3R_19025533_SNP [dm6]	G	A	3.957e^-5	1	SYNONYMOUS_CODING CG14285 DOWNSTREAM CG14286 & 1 other
3R	25888951	3R_25888951_SNP [dm3] 3R_30063229_SNP [dm6]	C	A	3.966e^-5	1	NON_SYNONYMOUS_CODING sima INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	11140143	3R_11140143_SNP [dm3] 3R_15314421_SNP [dm6]	T	C	4.194e^-5	1	INTRON Tm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	1837292	3R_1837292_SNP [dm3] 3R_6011570_SNP [dm6]	T	A	4.261e^-5	1	INTRON CG10280
3L	14016159	3L_14016159_SNP [dm3] 3L_14023059_SNP [dm6]	G	A	4.466e^-5	1	SYNONYMOUS_CODING ptip
X	5969915	X_5969915_SNP [dm3] X_6075882_SNP [dm6]	C	G	4.504e^-5	1	DOWNSTREAM CG4666 INTERGENIC
3L	2854296	3L_2854296_SNP [dm3] 3L_2854296_SNP [dm6]	A	C	4.518e^-5	1	INTRON CG43444
3L	8648455	3L_8648455_DEL [dm3] 3L_8655355_DEL [dm6]	AAGTATATCAA...	A	4.535e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17929158	3R_17929158_SNP [dm3] 3R_22103436_SNP [dm6]	A	G	4.561e^-5	1	NON_SYNONYMOUS_CODING CG13407 INTRON CG5778
3R	25800287	3R_25800287_SNP [dm3] 3R_29974565_SNP [dm6]	T	C	4.642e^-5	1	INTERGENIC
3R	10275239	3R_10275239_SNP [dm3] 3R_14449517_SNP [dm6]	C	A	4.716e^-5	1	INTRON cv-c
3R	25500447	3R_25500447_SNP [dm3] 3R_29674725_SNP [dm6]	C	A	4.724e^-5	1	SYNONYMOUS_CODING Bub3 UPSTREAM Cap-D2 DOWNSTREAM ppk19	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	477754	2L_477754_SNP [dm3] 2L_477754_SNP [dm6]	G	A	4.724e^-5	1	NON_SYNONYMOUS_CODING cbt INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	485935	2L_485935_SNP [dm3] 2L_485935_SNP [dm6]	G	A	4.724e^-5	1	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	485954	2L_485954_SNP [dm3] 2L_485954_SNP [dm6]	C	T	4.724e^-5	1	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	489499	2L_489499_DEL [dm3] 2L_489499_DEL [dm6]	GC	G	4.782e^-5	1	INTRON ush
3L	19511977	3L_19511977_SNP [dm3] 3L_19518877_SNP [dm6]	T	A	4.888e^-5	1	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3R	25786776	3R_25786776_SNP [dm3] 3R_29961054_SNP [dm6]	G	C	5.058e^-5	1	INTRON TkR99D
3R	1838452	3R_1838452_SNP [dm3] 3R_6012730_SNP [dm6]	C	T	5.076e^-5	1	UPSTREAM CG10280 INTERGENIC
X	17269417	X_17269417_INS [dm3] X_17375384_INS [dm6]	A	AGACAAA	5.109e^-5	1	INTERGENIC
2R	13962320	2R_13962320_SNP [dm3] 2R_18074815_SNP [dm6]	A	T	5.225e^-5	1	DOWNSTREAM CR45022 INTRON CG34386
2R	13962321	2R_13962321_SNP [dm3] 2R_18074816_SNP [dm6]	A	G	5.225e^-5	1	DOWNSTREAM CR45022 INTRON CG34386
3R	17612474	3R_17612474_SNP [dm3] 3R_21786752_SNP [dm6]	G	T	5.287e^-5	1	SYNONYMOUS_CODING CASK UPSTREAM CRG
2L	472690	2L_472690_SNP [dm3] 2L_472690_SNP [dm6]	A	G	5.312e^-5	1	UPSTREAM MED15 & 1 other INTRON CG4297	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5799191	3L_5799191_SNP [dm3] 3L_5806091_SNP [dm6]	A	C	5.319e^-5	1	SYNONYMOUS_CODING S6k DOWNSTREAM CG42272	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	6269919	X_6269919_SNP [dm3] X_6375886_SNP [dm6]	C	G	5.323e^-5	1	INTERGENIC
X	20044332	X_20044332_SNP [dm3] X_20150299_SNP [dm6]	C	A	5.350e^-5	1	INTRON CG9572
2R	15593947	2R_15593947_SNP [dm3] 2R_19706442_SNP [dm6]	A	T	5.565e^-5	1	INTERGENIC	regulatory region REDfly_CRMs
2L	456513	2L_456513_SNP [dm3] 2L_456513_SNP [dm6]	T	A	5.729e^-5	1	INTRON CG4133	TF binding site mE1_TFBS_cad
2L	458606	2L_458606_SNP [dm3] 2L_458606_SNP [dm6]	G	A	5.729e^-5	1	UTR_3_PRIME CG4133 DOWNSTREAM CG4297	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	489296	2L_489296_SNP [dm3] 2L_489296_SNP [dm6]	T	A	5.786e^-5	1	INTRON ush
X	3747759	X_3747759_SNP [dm3] X_3853726_SNP [dm6]	C	T	5.802e^-5	1	SYNONYMOUS_CODING ec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	488405	2L_488405_SNP [dm3] 2L_488405_SNP [dm6]	A	G	5.818e^-5	1	INTRON ush	TF binding site mE1_TFBS_Trl
X	20931096	X_20931096_SNP [dm3] X_21060069_SNP [dm6]	T	A	5.824e^-5	1	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_run
2L	492811	2L_492811_SNP [dm3] 2L_492811_SNP [dm6]	A	G	5.838e^-5	1	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	488456	2L_488456_SNP [dm3] 2L_488456_SNP [dm6]	A	T	6.048e^-5	1	INTRON ush	TF binding site mE1_TFBS_Trl
2L	6298742	2L_6298742_SNP [dm3] 2L_6298742_SNP [dm6]	C	G	6.143e^-5	1	INTRON Ddr
2L	465672	2L_465672_SNP [dm3] 2L_465672_SNP [dm6]	T	C	6.277e^-5	1	INTRON CG4297
3R	18252651	3R_18252651_SNP [dm3] 3R_22426929_SNP [dm6]	G	C	6.286e^-5	1	SYNONYMOUS_CODING CG13847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	452915	2L_452915_SNP [dm3] 2L_452915_SNP [dm6]	G	A	6.349e^-5	1	UTR_5_PRIME crq UPSTREAM CG4164 & 1 other INTRON crq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	492605	2L_492605_SNP [dm3] 2L_492605_SNP [dm6]	C	A	6.350e^-5	1	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	16051099	X_16051099_SNP [dm3] X_16157066_SNP [dm6]	T	C	6.400e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22269812	3R_22269812_SNP [dm3] 3R_26444090_SNP [dm6]	G	A	6.509e^-5	1	INTRON tx
2L	483064	2L_483064_SNP [dm3] 2L_483064_SNP [dm6]	G	A	6.517e^-5	1	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8795108	3L_8795108_SNP [dm3] 3L_8802008_SNP [dm6]	G	T	6.599e^-5	1	NON_SYNONYMOUS_CODING CG13311 UPSTREAM CG34426
2L	492643	2L_492643_SNP [dm3] 2L_492643_SNP [dm6]	C	T	7.010e^-5	1	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18617123	3L_18617123_SNP [dm3] 3L_18624023_SNP [dm6]	G	T	7.037e^-5	1	SYNONYMOUS_CODING bora	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	18264172	3L_18264172_SNP [dm3] 3L_18271072_SNP [dm6]	A	G	7.062e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	16693253	3R_16693253_SNP [dm3] 3R_20867531_SNP [dm6]	C	T	7.092e^-5	1	INTERGENIC
3R	16574636	3R_16574636_SNP [dm3] 3R_20748914_SNP [dm6]	G	A	7.131e^-5	1	SYNONYMOUS_CODING Prosalpha4T1 INTRON CG42322	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21183488	3R_21183488_SNP [dm3] 3R_25357766_SNP [dm6]	C	T	7.180e^-5	1	UPSTREAM CG11913 INTRON Fur1
2R	15718720	2R_15718720_SNP [dm3] 2R_19831215_SNP [dm6]	G	C	7.196e^-5	1	NON_SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	1839538	3R_1839538_SNP [dm3] 3R_6013816_SNP [dm6]	A	C	7.290e^-5	1	INTERGENIC
3L	10776821	3L_10776821_SNP [dm3] 3L_10783721_SNP [dm6]	T	A	7.299e^-5	1	UPSTREAM CR44544 INTERGENIC	TF binding site mE1_TFBS_inv
3R	22050007	3R_22050007_INS [dm3] 3R_26224285_INS [dm6]	G	GTTTCTCGATTATTCAG...	7.311e^-5	1	INTERGENIC
3L	6246569	3L_6246569_SNP [dm3] 3L_6253469_SNP [dm6]	A	G	7.323e^-5	1	INTRON Best2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	489244	2L_489244_DEL [dm3] 2L_489244_DEL [dm6]	TT	T	7.423e^-5	1	INTRON ush	TF binding site mE1_TFBS_Trl
3R	15751626	3R_15751626_SNP [dm3] 3R_19925904_SNP [dm6]	A	T	7.540e^-5	1	UPSTREAM CG4462 DOWNSTREAM CG4459 INTERGENIC
3L	7593180	3L_7593180_SNP [dm3] 3L_7600080_SNP [dm6]	T	G	7.587e^-5	1	INTRON CG33275
X	3761007	X_3761007_SNP [dm3] X_3866974_SNP [dm6]	G	A	7.717e^-5	1	UPSTREAM yin INTRON yin	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15148541	3R_15148541_SNP [dm3] 3R_19322819_SNP [dm6]	A	G	7.907e^-5	1	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6246570	3L_6246570_SNP [dm3] 3L_6253470_SNP [dm6]	T	A	7.941e^-5	1	INTRON Best2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14447335	3L_14447335_SNP [dm3] 3L_14454235_SNP [dm6]	G	T	7.987e^-5	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2678465	2R_2678465_SNP [dm3] 2R_6790960_SNP [dm6]	A	G	7.992e^-5	1	INTRON Epac
3L	4745616	3L_4745616_SNP [dm3] 3L_4745616_SNP [dm6]	A	T	8.019e^-5	1	DOWNSTREAM CR43882 INTRON RhoGEF64C
3R	14846613	3R_14846613_SNP [dm3] 3R_19020891_SNP [dm6]	A	C	8.041e^-5	1	DOWNSTREAM gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3813093	2L_3813093_SNP [dm3] 2L_3813093_SNP [dm6]	T	C	8.140e^-5	1	SYNONYMOUS_CODING CG3407	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1615167	3L_1615167_SNP [dm3] 3L_1615167_SNP [dm6]	C	T	8.157e^-5	1	NON_SYNONYMOUS_CODING CG12105 UPSTREAM CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad
3L	9189300	3L_9189300_SNP [dm3] 3L_9196200_SNP [dm6]	G	A	8.399e^-5	1	INTERGENIC
2L	2790427	2L_2790427_SNP [dm3] 2L_2790427_SNP [dm6]	G	C	8.400e^-5	1	INTRON Syt1
2L	985082	2L_985082_SNP [dm3] 2L_985082_SNP [dm6]	G	A	8.415e^-5	1	INTERGENIC
X	5188205	X_5188205_SNP [dm3] X_5294172_SNP [dm6]	G	A	8.529e^-5	1	INTERGENIC
3L	18644162	3L_18644162_SNP [dm3] 3L_18651062_SNP [dm6]	T	C	8.663e^-5	1	INTRON MYPT-75D
3L	1405084	3L_1405084_SNP [dm3] 3L_1405084_SNP [dm6]	T	G	8.759e^-5	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	3179256	X_3179256_SNP [dm3] X_3285223_SNP [dm6]	T	C	8.761e^-5	1	INTRON dnc
3R	26566711	3R_26566711_SNP [dm3] 3R_30740989_SNP [dm6]	A	G	8.770e^-5	1	INTERGENIC
2R	18657395	2R_18657395_SNP [dm3] 2R_22769890_SNP [dm6]	C	T	8.925e^-5	1	INTRON CG42260
2R	18657390	2R_18657390_SNP [dm3] 2R_22769885_SNP [dm6]	G	C	8.927e^-5	1	INTRON CG42260
3R	14846608	3R_14846608_SNP [dm3] 3R_19020886_SNP [dm6]	T	A	9.119e^-5	1	DOWNSTREAM gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3176871	X_3176871_INS [dm3] X_3282838_INS [dm6]	T	TTCAACAT	9.347e^-5	1	INTRON dnc
3L	18952071	3L_18952071_SNP [dm3] 3L_18958971_SNP [dm6]	T	C	9.515e^-5	1	INTERGENIC
2L	13305595	2L_13305595_SNP [dm3] 2L_13305595_SNP [dm6]	C	T	9.637e^-5	1	UTR_5_PRIME CG16825 UPSTREAM CG16825 DOWNSTREAM CG43779 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14144832	X_14144832_SNP [dm3] X_14250799_SNP [dm6]	A	G	9.729e^-5	1	SYNONYMOUS_CODING mud	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	1246877	2R_1246877_INS [dm3] 2R_5359372_INS [dm6]	C	CAC	9.772e^-5	1	DOWNSTREAM CG10417 INTERGENIC	transposable element FlyBase
3R	14516799	3R_14516799_SNP [dm3] 3R_18691077_SNP [dm6]	G	T	9.783e^-5	1	INTRON Muc91C
3L	18278619	3L_18278619_SNP [dm3] 3L_18285519_SNP [dm6]	T	C	9.878e^-5	1	INTERGENIC
3R	1858319	3R_1858319_DEL [dm3] 3R_6032597_DEL [dm6]	CATACAC	C	9.886e^-5	1	INTERGENIC
X	21959433	X_21959433_SNP [dm3] X_22557597_SNP [dm6]	A	T	9.992e^-5	1	INTERGENIC	transposable element FlyBase
2R	18657400	2R_18657400_SNP [dm3] 2R_22769895_SNP [dm6]	T	C	1.009e^-4	1	INTRON CG42260
3L	2202523	3L_2202523_SNP [dm3] 3L_2202523_SNP [dm6]	T	A	1.011e^-4	1	INTERGENIC
X	9489502	X_9489502_SNP [dm3] X_9595469_SNP [dm6]	A	G	1.021e^-4	1	DOWNSTREAM CR45543 INTERGENIC
2R	14416127	2R_14416127_SNP [dm3] 2R_18528622_SNP [dm6]	T	A	1.023e^-4	1	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19770207	3R_19770207_SNP [dm3] 3R_23944485_SNP [dm6]	C	T	1.033e^-4	1	SYNONYMOUS_CODING CG12268	TF binding site mE1_TFBS_cad
X	3747618	X_3747618_SNP [dm3] X_3853585_SNP [dm6]	T	C	1.048e^-4	1	SYNONYMOUS_CODING ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11589944	2R_11589944_SNP [dm3] 2R_15702439_SNP [dm6]	A	G	1.054e^-4	1	UPSTREAM CG30080 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	12907393	X_12907393_DEL [dm3] X_13013360_DEL [dm6]	CA	G	1.062e^-4	1	INTRON rad
2R	13355475	2R_13355475_SNP [dm3] 2R_17467970_SNP [dm6]	C	T	1.069e^-4	1	SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_sens
2L	1705693	2L_1705693_SNP [dm3] 2L_1705693_SNP [dm6]	G	A	1.082e^-4	1	SYNONYMOUS_CODING cpb	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6425437	2L_6425437_SNP [dm3] 2L_6425437_SNP [dm6]	A	T	1.085e^-4	1	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18927387	3L_18927387_SNP [dm3] 3L_18934287_SNP [dm6]	G	C	1.088e^-4	1	INTRON CG32204
2R	18657613	2R_18657613_SNP [dm3] 2R_22770108_SNP [dm6]	G	A	1.093e^-4	1	INTRON CG42260
3L	4003181	3L_4003181_SNP [dm3] 3L_4003181_SNP [dm6]	G	A	1.094e^-4	1	UPSTREAM CG14985 INTERGENIC
3L	3330842	3L_3330842_SNP [dm3] 3L_3330842_SNP [dm6]	C	G	1.105e^-4	1	SYNONYMOUS_CODING CG14961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	6357995	3L_6357995_SNP [dm3] 3L_6364895_SNP [dm6]	G	T	1.129e^-4	1	INTERGENIC
3R	18252478	3R_18252478_SNP [dm3] 3R_22426756_SNP [dm6]	A	T	1.146e^-4	1	INTRON CG13847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21994263	3R_21994263_SNP [dm3] 3R_26168541_SNP [dm6]	A	C	1.152e^-4	1	INTERGENIC
2L	3587396	2L_3587396_SNP [dm3] 2L_3587396_SNP [dm6]	G	T	1.177e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	5397278	3R_5397278_SNP [dm3] 3R_9571556_SNP [dm6]	C	T	1.178e^-4	1	UTR_5_PRIME CG9396 DOWNSTREAM CG9399
3R	22998052	3R_22998052_SNP [dm3] 3R_27172330_SNP [dm6]	A	T	1.182e^-4	1	UTR_3_PRIME Ser	regulatory region REDfly_CRMs
3R	1863680	3R_1863680_SNP [dm3] 3R_6037958_SNP [dm6]	G	A	1.193e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	1856645	3R_1856645_SNP [dm3] 3R_6030923_SNP [dm6]	A	T	1.201e^-4	1	INTERGENIC
3R	1815365	3R_1815365_SNP [dm3] 3R_5989643_SNP [dm6]	G	A	1.212e^-4	1	EXON CR44927	TF binding site mE1_TFBS_cad
3L	7084245	3L_7084245_SNP [dm3] 3L_7091145_SNP [dm6]	G	A	1.232e^-4	1	INTERGENIC
3L	8648609	3L_8648609_SNP [dm3] 3L_8655509_SNP [dm6]	A	G	1.240e^-4	1	INTERGENIC
3R	19010712	3R_19010712_SNP [dm3] 3R_23184990_SNP [dm6]	T	C	1.245e^-4	1	UTR_3_PRIME Irk1 DOWNSTREAM cnc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18092645	3L_18092645_SNP [dm3] 3L_18099545_SNP [dm6]	A	T	1.251e^-4	1	INTRON CG13698
3L	2477402	3L_2477402_SNP [dm3] 3L_2477402_SNP [dm6]	G	A	1.252e^-4	1	INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6358096	3L_6358096_SNP [dm3] 3L_6364996_SNP [dm6]	C	G	1.252e^-4	1	INTERGENIC
3R	25745014	3R_25745014_SNP [dm3] 3R_29919292_SNP [dm6]	G	C	1.278e^-4	1	INTRON trp
3R	10275302	3R_10275302_SNP [dm3] 3R_14449580_SNP [dm6]	C	G	1.285e^-4	1	INTRON cv-c
3L	2586803	3L_2586803_SNP [dm3] 3L_2586803_SNP [dm6]	A	C	1.292e^-4	1	UPSTREAM msn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15901587	3R_15901587_SNP [dm3] 3R_20075865_SNP [dm6]	G	C	1.294e^-4	1	INTERGENIC
2L	9835046	2L_9835046_SNP [dm3] 2L_9835046_SNP [dm6]	T	A	1.294e^-4	1	INTRON nAChRalpha6
2L	4623064	2L_4623064_SNP [dm3] 2L_4623064_SNP [dm6]	C	T	1.305e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6570230	3L_6570230_SNP [dm3] 3L_6577130_SNP [dm6]	T	C	1.312e^-4	1	INTRON CG18769 & 1 other
2R	13751428	2R_13751428_SNP [dm3] 2R_17863923_SNP [dm6]	A	T	1.317e^-4	1	SYNONYMOUS_CODING thr
3L	2630465	3L_2630465_SNP [dm3] 3L_2630465_SNP [dm6]	G	A	1.324e^-4	1	UPSTREAM Pxn EXON CR45660
3R	14388602	3R_14388602_SNP [dm3] 3R_18562880_SNP [dm6]	C	A	1.324e^-4	1	INTERGENIC
3R	4669245	3R_4669245_SNP [dm3] 3R_8843523_SNP [dm6]	T	G	1.330e^-4	1	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18356003	X_18356003_SNP [dm3] X_18461970_SNP [dm6]	G	T	1.334e^-4	1	INTRON CG32547 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11504972	2R_11504972_SNP [dm3] 2R_15617467_SNP [dm6]	C	T	1.334e^-4	1	INTRON CG42524
2R	13751371	2R_13751371_SNP [dm3] 2R_17863866_SNP [dm6]	C	G	1.337e^-4	1	NON_SYNONYMOUS_CODING thr
3R	25665730	3R_25665730_SNP [dm3] 3R_29840008_SNP [dm6]	G	A	1.339e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	4003125	3L_4003125_SNP [dm3] 3L_4003125_SNP [dm6]	G	T	1.345e^-4	1	UPSTREAM CG14985 INTERGENIC
3L	18933967	3L_18933967_SNP [dm3] 3L_18940867_SNP [dm6]	G	T	1.348e^-4	1	INTRON CG32204
X	14384632	X_14384632_SNP [dm3] X_14490599_SNP [dm6]	T	C	1.357e^-4	1	INTERGENIC
3L	18617174	3L_18617174_SNP [dm3] 3L_18624074_SNP [dm6]	G	A	1.375e^-4	1	SYNONYMOUS_CODING bora	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	13240558	2R_13240558_SNP [dm3] 2R_17353053_SNP [dm6]	G	C	1.385e^-4	1	UTR_3_PRIME mbl INTRON mbl
3R	18444562	3R_18444562_SNP [dm3] 3R_22618840_SNP [dm6]	A	G	1.388e^-4	1	SYNONYMOUS_CODING mRpL45 DOWNSTREAM CG31161	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6323061	X_6323061_DEL [dm3] X_6429028_DEL [dm6]	AAA	G	1.397e^-4	1	INTRON CG42340
3L	16298523	3L_16298523_SNP [dm3] 3L_16305423_SNP [dm6]	G	A	1.403e^-4	1	SYNONYMOUS_CODING CG13043 DOWNSTREAM CG43249	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1955264	3R_1955264_DEL [dm3] 3R_6129542_DEL [dm6]	AA	A	1.408e^-4	1	INTERGENIC
3R	1714285	3R_1714285_SNP [dm3] 3R_5888563_SNP [dm6]	C	T	1.413e^-4	1	INTRON CG34113
2L	10481936	2L_10481936_SNP [dm3] 2L_10481936_SNP [dm6]	C	A	1.421e^-4	1	SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2
3R	1704414	3R_1704414_SNP [dm3] 3R_5878692_SNP [dm6]	G	A	1.426e^-4	1	SPLICE_SITE_REGION CG34113 INTRON CG34113
2L	13154183	2L_13154183_SNP [dm3] 2L_13154183_SNP [dm6]	T	G	1.432e^-4	1	INTERGENIC
3R	25784965	3R_25784965_SNP [dm3] 3R_29959243_SNP [dm6]	A	T	1.468e^-4	1	NON_SYNONYMOUS_CODING TkR99D
3R	1701313	3R_1701313_SNP [dm3] 3R_5875591_SNP [dm6]	C	T	1.476e^-4	1	INTRON CG34113
3L	8648542	3L_8648542_SNP [dm3] 3L_8655442_SNP [dm6]	T	C	1.521e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	1305498	X_1305498_INS [dm3] X_1411465_INS [dm6]	G	GGTG	1.573e^-4	1	UPSTREAM futsch INTRON futsch	TF binding site BDTNP1_TFBS_dl
3L	15702866	3L_15702866_SNP [dm3] 3L_15709766_SNP [dm6]	C	A	1.574e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8523117	2L_8523117_SNP [dm3] 2L_8523117_SNP [dm6]	A	G	1.585e^-4	1	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	6840599	3L_6840599_SNP [dm3] 3L_6847499_SNP [dm6]	C	A	1.590e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18702933	2R_18702933_SNP [dm3] 2R_22815428_SNP [dm6]	C	T	1.612e^-4	1	SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	10362795	3L_10362795_DEL [dm3] 3L_10369695_DEL [dm6]	GTAAATG	C	1.615e^-4	1	INTERGENIC
3R	13434233	3R_13434233_SNP [dm3] 3R_17608511_SNP [dm6]	G	T	1.632e^-4	1	UTR_3_PRIME sll UPSTREAM CG14329
3L	11253062	3L_11253062_SNP [dm3] 3L_11259962_SNP [dm6]	C	G	1.634e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8672749	3L_8672749_SNP [dm3] 3L_8679649_SNP [dm6]	G	A	1.634e^-4	1	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	15593547	2R_15593547_SNP [dm3] 2R_19706042_SNP [dm6]	T	A	1.645e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	16592123	3R_16592123_DEL [dm3] 3R_20766401_DEL [dm6]	AG	A	1.651e^-4	1	INTRON Syp	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	3180317	2R_3180317_SNP [dm3] 2R_7292812_SNP [dm6]	T	C	1.654e^-4	1	INTRON pwn
2R	7349462	2R_7349462_SNP [dm3] 2R_11461957_SNP [dm6]	C	A	1.668e^-4	1	UTR_3_PRIME E_Pc_	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17637974	3R_17637974_SNP [dm3] 3R_21812252_SNP [dm6]	C	T	1.669e^-4	1	INTRON CASK
2L	10515724	2L_10515724_SNP [dm3] 2L_10515724_SNP [dm6]	C	G	1.674e^-4	1	INTRON Fatp & 1 other
2R	16168304	2R_16168304_SNP [dm3] 2R_20280799_SNP [dm6]	T	C	1.682e^-4	1	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2R	14146360	2R_14146360_SNP [dm3] 2R_18258855_SNP [dm6]	T	A	1.682e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17236312	3R_17236312_SNP [dm3] 3R_21410590_SNP [dm6]	T	C	1.686e^-4	1	NON_SYNONYMOUS_CODING lbl SYNONYMOUS_CODING lbl DOWNSTREAM CheB93b	TF binding site mE1_TFBS_cad
2R	11637450	2R_11637450_SNP [dm3] 2R_15749945_SNP [dm6]	C	A	1.688e^-4	1	INTRON CG30089
2R	3213375	2R_3213375_SNP [dm3] 2R_7325870_SNP [dm6]	C	G	1.689e^-4	1	UPSTREAM CR45129 INTRON Dscam1	TF binding site BDTNP1_TFBS_dl
3L	16994041	3L_16994041_SNP [dm3] 3L_17000941_SNP [dm6]	C	G	1.689e^-4	1	INTRON CG3764
2L	10515699	2L_10515699_SNP [dm3] 2L_10515699_SNP [dm6]	G	T	1.703e^-4	1	INTRON Fatp & 1 other
X	3020162	X_3020162_SNP [dm3] X_3126129_SNP [dm6]	A	G	1.707e^-4	1	INTRON kirre
2L	2617570	2L_2617570_SNP [dm3] 2L_2617570_SNP [dm6]	T	C	1.709e^-4	1	INTERGENIC
3L	16871866	3L_16871866_SNP [dm3] 3L_16878766_SNP [dm6]	T	C	1.718e^-4	1	SYNONYMOUS_CODING CG32170 INTRON Lmpt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5845338	X_5845338_SNP [dm3] X_5951305_SNP [dm6]	A	C	1.719e^-4	1	SYNONYMOUS_CODING CG32755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14668435	3L_14668435_SNP [dm3] 3L_14675335_SNP [dm6]	T	C	1.750e^-4	1	SYNONYMOUS_CODING CG4914 DOWNSTREAM tRNA:M3:70Fb INTRON ome	TF binding site mE1_TFBS_sens
3R	15581200	3R_15581200_DEL [dm3] 3R_19755478_DEL [dm6]	ATTTGTTCATACCACACATT...	A	1.751e^-4	1	INTRON GluClalpha
2R	12266465	2R_12266465_SNP [dm3] 2R_16378960_SNP [dm6]	C	G	1.752e^-4	1	DOWNSTREAM CR45317 EXON CR45316
2R	15593447	2R_15593447_SNP [dm3] 2R_19705942_SNP [dm6]	G	A	1.765e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	11129400	3L_11129400_SNP [dm3] 3L_11136300_SNP [dm6]	G	A	1.777e^-4	1	DOWNSTREAM CG14143 INTRON CG32082
2R	7378830	2R_7378830_INS [dm3] 2R_11491325_INS [dm6]	C	CGAC	1.783e^-4	1	INTRON inv
3R	26079842	3R_26079842_DEL [dm3] 3R_30254120_DEL [dm6]	CC	C	1.797e^-4	1	DOWNSTREAM CG18404 INTERGENIC
3R	26079845	3R_26079845_SNP [dm3] 3R_30254123_SNP [dm6]	T	A	1.797e^-4	1	DOWNSTREAM CG18404 INTERGENIC
3R	1822509	3R_1822509_SNP [dm3] 3R_5996787_SNP [dm6]	T	G	1.798e^-4	1	UPSTREAM CR44928 INTERGENIC
3L	13312215	3L_13312215_SNP [dm3] 3L_13319115_SNP [dm6]	G	A	1.803e^-4	1	INTERGENIC
3R	13130148	3R_13130148_SNP [dm3] 3R_17304426_SNP [dm6]	T	C	1.805e^-4	1	INTERGENIC
3R	19702145	3R_19702145_SNP [dm3] 3R_23876423_SNP [dm6]	T	C	1.806e^-4	1	INTRON Pli
2R	9203429	2R_9203429_SNP [dm3] 2R_13315924_SNP [dm6]	T	A	1.807e^-4	1	INTERGENIC
2L	3698510	2L_3698510_DEL [dm3] 2L_3698510_DEL [dm6]	AA	A	1.818e^-4	1	UTR_3_PRIME CG10031 UPSTREAM CG3604 & 1 other
3L	14042177	3L_14042177_SNP [dm3] 3L_14049077_SNP [dm6]	T	G	1.821e^-4	1	SPLICE_SITE_REGION blue INTRON blue	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6645723	2R_6645723_SNP [dm3] 2R_10758218_SNP [dm6]	G	A	1.840e^-4	1	INTRON CG33144
2R	13751362	2R_13751362_SNP [dm3] 2R_17863857_SNP [dm6]	C	G	1.846e^-4	1	SYNONYMOUS_CODING thr
2L	21181281	2L_21181281_SNP [dm3] 2L_21181281_SNP [dm6]	A	T	1.848e^-4	1	NON_SYNONYMOUS_CODING Mcm10	TF binding site mE1_TFBS_cad
3R	25464450	3R_25464450_SNP [dm3] 3R_29638728_SNP [dm6]	T	C	1.852e^-4	1	INTRON Dop1R2
2L	9175912	2L_9175912_SNP [dm3] 2L_9175912_SNP [dm6]	T	A	1.872e^-4	1	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2196143	3L_2196143_SNP [dm3] 3L_2196143_SNP [dm6]	C	T	1.892e^-4	1	UPSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11594496	2R_11594496_SNP [dm3] 2R_15706991_SNP [dm6]	C	G	1.914e^-4	1	INTERGENIC
X	18356000	X_18356000_SNP [dm3] X_18461967_SNP [dm6]	G	A	1.923e^-4	1	INTRON CG32547 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8374419	3R_8374419_SNP [dm3] 3R_12548697_SNP [dm6]	A	T	1.929e^-4	1	UPSTREAM Octbeta3R INTERGENIC
3R	15148558	3R_15148558_SNP [dm3] 3R_19322836_SNP [dm6]	A	T	1.932e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10515453	2L_10515453_SNP [dm3] 2L_10515453_SNP [dm6]	C	T	1.932e^-4	1	INTRON Fatp & 1 other
2L	4739680	2L_4739680_DEL [dm3] 2L_4739680_DEL [dm6]	TGCAGCTTGGCCACTCT...	T	1.933e^-4	1	INTRON CG15630
2L	8645595	2L_8645595_SNP [dm3] 2L_8645595_SNP [dm6]	T	A	1.941e^-4	1	INTRON Sema-1a
3R	3202451	3R_3202451_SNP [dm3] 3R_7376729_SNP [dm6]	G	A	1.943e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13594255	2R_13594255_SNP [dm3] 2R_17706750_SNP [dm6]	G	T	1.945e^-4	1	SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6664685	3R_6664685_DEL [dm3] 3R_10838963_DEL [dm6]	TTC	G	1.980e^-4	1	INTRON Cad86C
2L	3596094	2L_3596094_SNP [dm3] 2L_3596094_SNP [dm6]	C	A	1.983e^-4	1	INTERGENIC
2R	1245649	2R_1245649_SNP [dm3] 2R_5358144_SNP [dm6]	A	G	1.985e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA transposable element FlyBase
3R	25776759	3R_25776759_SNP [dm3] 3R_29951037_SNP [dm6]	A	C	1.990e^-4	1	UTR_3_PRIME TkR99D
3R	13130049	3R_13130049_SNP [dm3] 3R_17304327_SNP [dm6]	T	C	2.003e^-4	1	INTERGENIC
3L	15083745	3L_15083745_SNP [dm3] 3L_15090645_SNP [dm6]	A	T	2.003e^-4	1	UPSTREAM cp309 DOWNSTREAM CG6945 INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	14117810	2R_14117810_SNP [dm3] 2R_18230305_SNP [dm6]	G	C	2.008e^-4	1	EXON CR45311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_Trl
X	4012150	X_4012150_SNP [dm3] X_4118117_SNP [dm6]	G	A	2.019e^-4	1	UTR_5_PRIME tyf UPSTREAM Tip60	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	3754839	X_3754839_DEL [dm3] X_3860806_DEL [dm6]	CTGGCTTCT	C	2.019e^-4	1	EXON roX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	1838422	3R_1838422_SNP [dm3] 3R_6012700_SNP [dm6]	C	T	2.022e^-4	1	UPSTREAM CG10280 INTERGENIC
3L	9627943	3L_9627943_SNP [dm3] 3L_9634843_SNP [dm6]	G	T	2.035e^-4	1	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15155856	3R_15155856_SNP [dm3] 3R_19330134_SNP [dm6]	G	C	2.038e^-4	1	INTRON CR43258 EXON CR43258	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6246484	3L_6246484_SNP [dm3] 3L_6253384_SNP [dm6]	A	G	2.041e^-4	1	INTRON Best2	TF binding site BDTNP1_TFBS_dl
3R	10275301	3R_10275301_SNP [dm3] 3R_14449579_SNP [dm6]	G	T	2.044e^-4	1	INTRON cv-c
3R	1838573	3R_1838573_SNP [dm3] 3R_6012851_SNP [dm6]	G	A	2.048e^-4	1	UPSTREAM CG10280 INTERGENIC
2L	6775154	2L_6775154_SNP [dm3] 2L_6775154_SNP [dm6]	A	T	2.049e^-4	1	UPSTREAM CG17378 INTRON CG17378
2L	10094768	2L_10094768_SNP [dm3] 2L_10094768_SNP [dm6]	T	A	2.051e^-4	1	INTRON CG44153 & 1 other
X	5870568	X_5870568_SNP [dm3] X_5976535_SNP [dm6]	C	T	2.052e^-4	1	INTRON Grip
3R	1706828	3R_1706828_SNP [dm3] 3R_5881106_SNP [dm6]	G	C	2.055e^-4	1	INTRON CG34113	TF binding site mE1_TFBS_cad
3R	1833863	3R_1833863_SNP [dm3] 3R_6008141_SNP [dm6]	G	T	2.062e^-4	1	NON_SYNONYMOUS_CODING Rm62 UTR_5_PRIME Rm62 UPSTREAM Rm62	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5184759	X_5184759_SNP [dm3] X_5290726_SNP [dm6]	G	A	2.066e^-4	1	INTERGENIC
2L	8614638	2L_8614638_SNP [dm3] 2L_8614638_SNP [dm6]	C	T	2.068e^-4	1	INTRON Sema-1a
3R	10387672	3R_10387672_SNP [dm3] 3R_14561950_SNP [dm6]	A	T	2.077e^-4	1	UPSTREAM CG14851 DOWNSTREAM CG14850 INTERGENIC
2L	5021092	2L_5021092_SNP [dm3] 2L_5021092_SNP [dm6]	T	G	2.084e^-4	1	INTRON vkg
3L	19512034	3L_19512034_SNP [dm3] 3L_19518934_SNP [dm6]	G	T	2.085e^-4	1	UPSTREAM Cpr76Ba & 1 other INTERGENIC
2R	14439933	2R_14439933_SNP [dm3] 2R_18552428_SNP [dm6]	A	C	2.096e^-4	1	INTERGENIC
3R	24062669	3R_24062669_SNP [dm3] 3R_28236947_SNP [dm6]	G	A	2.109e^-4	1	DOWNSTREAM CR45041 INTRON CG34354
2R	5625252	2R_5625252_SNP [dm3] 2R_9737747_SNP [dm6]	T	C	2.122e^-4	1	INTRON sqa
2L	10515532	2L_10515532_SNP [dm3] 2L_10515532_SNP [dm6]	C	T	2.137e^-4	1	INTRON Fatp & 1 other
3L	15748121	3L_15748121_SNP [dm3] 3L_15755021_SNP [dm6]	T	G	2.150e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6949727	2R_6949727_SNP [dm3] 2R_11062222_SNP [dm6]	T	C	2.171e^-4	1	INTRON luna
3R	6660783	3R_6660783_SNP [dm3] 3R_10835061_SNP [dm6]	C	A	2.182e^-4	1	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1684394	3L_1684394_SNP [dm3] 3L_1684394_SNP [dm6]	A	G	2.186e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_chinmo
2R	13962523	2R_13962523_SNP [dm3] 2R_18075018_SNP [dm6]	T	A	2.192e^-4	1	DOWNSTREAM CR45022 INTRON CG34386
2R	18751132	2R_18751132_SNP [dm3] 2R_22863609_SNP [dm6]	C	A	2.192e^-4	1	INTERGENIC
2L	8149031	2L_8149031_INS [dm3] 2L_8149031_INS [dm6]	T	TT	2.196e^-4	1	UTR_5_PRIME CG43394 DOWNSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12267236	2R_12267236_SNP [dm3] 2R_16379731_SNP [dm6]	A	G	2.200e^-4	1	UPSTREAM CG43187 EXON CR45316 & 1 other
3L	16871860	3L_16871860_SNP [dm3] 3L_16878760_SNP [dm6]	C	T	2.205e^-4	1	SYNONYMOUS_CODING CG32170 INTRON Lmpt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1130583	3L_1130583_SNP [dm3] 3L_1130583_SNP [dm6]	T	A	2.206e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	14016621	3L_14016621_SNP [dm3] 3L_14023521_SNP [dm6]	T	C	2.208e^-4	1	INTRON ptip	TF binding site mE1_TFBS_chinmo
3L	477529	3L_477529_SNP [dm3] 3L_477529_SNP [dm6]	A	G	2.216e^-4	1	INTRON klar
3R	13470566	3R_13470566_SNP [dm3] 3R_17644844_SNP [dm6]	T	C	2.220e^-4	1	SYNONYMOUS_CODING CG43175 UPSTREAM tRNA:CR31578 DOWNSTREAM tRNA:CR31568	TF binding site mE1_TFBS_cad
2L	6775162	2L_6775162_SNP [dm3] 2L_6775162_SNP [dm6]	T	G	2.221e^-4	1	UPSTREAM CG17378 INTRON CG17378
3L	6246527	3L_6246527_SNP [dm3] 3L_6253427_SNP [dm6]	G	T	2.223e^-4	1	INTRON Best2	TF binding site BDTNP1_TFBS_dl
2R	11836071	2R_11836071_SNP [dm3] 2R_15948566_SNP [dm6]	T	C	2.224e^-4	1	NON_SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6418351	2L_6418351_SNP [dm3] 2L_6418351_SNP [dm6]	A	G	2.237e^-4	1	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_chinmo
2L	5336484	2L_5336484_SNP [dm3] 2L_5336484_SNP [dm6]	G	A	2.239e^-4	1	UPSTREAM fusl INTRON fusl
3R	21183471	3R_21183471_INS [dm3] 3R_25357749_INS [dm6]	G	GAA	2.249e^-4	1	UPSTREAM CG11913 INTRON Fur1
2R	16826806	2R_16826806_SNP [dm3] 2R_20939301_SNP [dm6]	C	T	2.255e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	18378234	3L_18378234_SNP [dm3] 3L_18385134_SNP [dm6]	T	C	2.259e^-4	1	INTERGENIC
2R	13962085	2R_13962085_SNP [dm3] 2R_18074580_SNP [dm6]	C	A	2.262e^-4	1	DOWNSTREAM CR45022 INTRON CG34386
3L	3341903	3L_3341903_SNP [dm3] 3L_3341903_SNP [dm6]	C	T	2.262e^-4	1	INTRON kst
2R	5625464	2R_5625464_SNP [dm3] 2R_9737959_SNP [dm6]	A	C	2.264e^-4	1	INTRON sqa
2R	14146330	2R_14146330_SNP [dm3] 2R_18258825_SNP [dm6]	A	C	2.271e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1819676	3R_1819676_SNP [dm3] 3R_5993954_SNP [dm6]	T	A	2.274e^-4	1	DOWNSTREAM CR44928 INTERGENIC
3R	1819787	3R_1819787_SNP [dm3] 3R_5994065_SNP [dm6]	G	A	2.274e^-4	1	DOWNSTREAM CR44928 INTERGENIC
3R	1829927	3R_1829927_SNP [dm3] 3R_6004205_SNP [dm6]	G	A	2.274e^-4	1	SYNONYMOUS_CODING Rm62	TF binding site mE1_TFBS_chinmo
2L	488424	2L_488424_SNP [dm3] 2L_488424_SNP [dm6]	A	T	2.278e^-4	1	INTRON ush	TF binding site mE1_TFBS_Trl
2L	6898844	2L_6898844_SNP [dm3] 2L_6898844_SNP [dm6]	T	C	2.280e^-4	1	INTRON Nlg2
3L	5871324	3L_5871324_SNP [dm3] 3L_5878224_SNP [dm6]	G	T	2.290e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7200177	3R_7200177_SNP [dm3] 3R_11374455_SNP [dm6]	T	C	2.299e^-4	1	SYNONYMOUS_CODING pros	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	6051153	2L_6051153_SNP [dm3] 2L_6051153_SNP [dm6]	T	C	2.313e^-4	1	DOWNSTREAM CG12393 INTRON CG9135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6051631	2L_6051631_SNP [dm3] 2L_6051631_SNP [dm6]	G	T	2.313e^-4	1	UTR_5_PRIME CG9135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17710971	2R_17710971_SNP [dm3] 2R_21823466_SNP [dm6]	G	A	2.315e^-4	1	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2076559	3L_2076559_SNP [dm3] 3L_2076559_SNP [dm6]	A	C	2.325e^-4	1	INTRON sls
2R	12693480	2R_12693480_SNP [dm3] 2R_16805975_SNP [dm6]	G	T	2.338e^-4	1	INTERGENIC
2R	9267137	2R_9267137_SNP [dm3] 2R_13379632_SNP [dm6]	T	C	2.346e^-4	1	INTERGENIC
3R	4669301	3R_4669301_SNP [dm3] 3R_8843579_SNP [dm6]	C	A	2.356e^-4	1	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5630019	2R_5630019_SNP [dm3] 2R_9742514_SNP [dm6]	T	A	2.356e^-4	1	INTRON sqa
2R	16168278	2R_16168278_SNP [dm3] 2R_20280773_SNP [dm6]	T	C	2.361e^-4	1	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
3R	21183431	3R_21183431_SNP [dm3] 3R_25357709_SNP [dm6]	A	T	2.363e^-4	1	UPSTREAM CG11913 INTRON Fur1
3R	21183446	3R_21183446_SNP [dm3] 3R_25357724_SNP [dm6]	C	T	2.363e^-4	1	UPSTREAM CG11913 INTRON Fur1
3R	21183536	3R_21183536_DEL [dm3] 3R_25357814_DEL [dm6]	TTTTGC	T	2.363e^-4	1	UPSTREAM CG11913 INTRON Fur1
3R	21183555	3R_21183555_DEL [dm3] 3R_25357833_DEL [dm6]	TAA	T	2.363e^-4	1	UPSTREAM CG11913 INTRON Fur1
3R	23600036	3R_23600036_SNP [dm3] 3R_27774314_SNP [dm6]	C	A	2.373e^-4	1	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3R	25189151	3R_25189151_SNP [dm3] 3R_29363429_SNP [dm6]	T	C	2.373e^-4	1	INTERGENIC
2R	1246690	2R_1246690_SNP [dm3] 2R_5359185_SNP [dm6]	G	A	2.382e^-4	1	INTERGENIC	transposable element FlyBase
3L	12880566	3L_12880566_SNP [dm3] 3L_12887466_SNP [dm6]	A	T	2.386e^-4	1	SYNONYMOUS_CODING CG14120
2L	13329972	2L_13329972_SNP [dm3] 2L_13329972_SNP [dm6]	A	G	2.398e^-4	1	INTRON CG43778
3R	5381906	3R_5381906_SNP [dm3] 3R_9556184_SNP [dm6]	A	T	2.400e^-4	1	NON_SYNONYMOUS_CODING CG8199 UPSTREAM CG9386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21183473	3R_21183473_SNP [dm3] 3R_25357751_SNP [dm6]	T	A	2.403e^-4	1	UPSTREAM CG11913 INTRON Fur1
2L	458839	2L_458839_SNP [dm3] 2L_458839_SNP [dm6]	A	G	2.406e^-4	1	DOWNSTREAM CG4297 & 1 other INTERGENIC
X	8602687	X_8602687_SNP [dm3] X_8708654_SNP [dm6]	A	T	2.415e^-4	1	UPSTREAM CR44507 & 1 other DOWNSTREAM CR44508 INTERGENIC
2L	6972212	2L_6972212_SNP [dm3] 2L_6972212_SNP [dm6]	A	T	2.425e^-4	1	UPSTREAM CR43142 & 1 other DOWNSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1
3R	9270443	3R_9270443_SNP [dm3] 3R_13444721_SNP [dm6]	C	A	2.437e^-4	1	UPSTREAM CR45679 INTERGENIC
2R	1347816	2R_1347816_SNP [dm3] 2R_5460311_SNP [dm6]	C	A	2.454e^-4	1	INTERGENIC	transposable element FlyBase
3L	5871188	3L_5871188_SNP [dm3] 3L_5878088_SNP [dm6]	C	T	2.480e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25550168	3R_25550168_SNP [dm3] 3R_29724446_SNP [dm6]	G	A	2.482e^-4	1	UPSTREAM CG18731 DOWNSTREAM Pcd INTRON CG7593	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	17180541	3R_17180541_DEL [dm3] 3R_21354819_DEL [dm6]	TAAACGTATACATATATT...	T	2.492e^-4	1	DOWNSTREAM mod_mdg4_ & 6 others INTRON mod_mdg4_
3R	20331888	3R_20331888_SNP [dm3] 3R_24506166_SNP [dm6]	G	C	2.492e^-4	1	INTERGENIC	transposable element FlyBase
2L	6148107	2L_6148107_SNP [dm3] 2L_6148107_SNP [dm6]	A	G	2.496e^-4	1	INTERGENIC
2L	7648291	2L_7648291_SNP [dm3] 2L_7648291_SNP [dm6]	G	A	2.498e^-4	1	INTRON Slob
3R	2000032	3R_2000032_SNP [dm3] 3R_6174310_SNP [dm6]	C	T	2.505e^-4	1	SYNONYMOUS_CODING Osi1
3L	10378979	3L_10378979_SNP [dm3] 3L_10385879_SNP [dm6]	A	C	2.509e^-4	1	UPSTREAM CR45245 INTERGENIC
3R	8138604	3R_8138604_SNP [dm3] 3R_12312882_SNP [dm6]	T	A	2.525e^-4	1	SYNONYMOUS_CODING CG4066	TF binding site BDTNP1_TFBS_slp1
3L	19769849	3L_19769849_SNP [dm3] 3L_19776749_SNP [dm6]	G	A	2.532e^-4	1	INTRON CG42637 & 1 other
2R	5827690	2R_5827690_SNP [dm3] 2R_9940185_SNP [dm6]	T	C	2.532e^-4	1	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	13564815	3R_13564815_SNP [dm3] 3R_17739093_SNP [dm6]	C	A	2.542e^-4	1	UPSTREAM TyrRII INTRON TyrRII
2L	12193562	2L_12193562_SNP [dm3] 2L_12193562_SNP [dm6]	C	G	2.547e^-4	1	INTRON aret
3L	5444362	3L_5444362_DEL [dm3] 3L_5451262_DEL [dm6]	TT	A	2.553e^-4	1	INTERGENIC
2R	12959270	2R_12959270_SNP [dm3] 2R_17071765_SNP [dm6]	C	T	2.555e^-4	1	SYNONYMOUS_CODING CG30460	TF binding site mE1_TFBS_cad
X	13389364	X_13389364_SNP [dm3] X_13495331_SNP [dm6]	G	T	2.563e^-4	1	INTRON Neto
2R	6647115	2R_6647115_SNP [dm3] 2R_10759610_SNP [dm6]	T	A	2.564e^-4	1	INTRON CG33144
X	3167413	X_3167413_SNP [dm3] X_3273380_SNP [dm6]	C	T	2.568e^-4	1	INTRON dnc
2R	1246716	2R_1246716_SNP [dm3] 2R_5359211_SNP [dm6]	A	G	2.568e^-4	1	INTERGENIC	transposable element FlyBase
3L	5388040	3L_5388040_INS [dm3] 3L_5394940_INS [dm6]	T	TAAT	2.570e^-4	1	INTERGENIC
2L	1619480	2L_1619480_SNP [dm3] 2L_1619480_SNP [dm6]	A	C	2.576e^-4	1	EXON CR44603
2R	16828997	2R_16828997_INS [dm3] 2R_20941492_INS [dm6]	C	CGATGTGTCGATGTC...	2.583e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4571328	X_4571328_SNP [dm3] X_4677295_SNP [dm6]	A	G	2.583e^-4	1	INTRON rap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	23518858	3R_23518858_SNP [dm3] 3R_27693136_SNP [dm6]	A	G	2.588e^-4	1	DOWNSTREAM CG12880 INTERGENIC
2R	5625878	2R_5625878_SNP [dm3] 2R_9738373_SNP [dm6]	G	C	2.589e^-4	1	INTRON sqa
2R	5625886	2R_5625886_SNP [dm3] 2R_9738381_SNP [dm6]	G	A	2.589e^-4	1	INTRON sqa
3R	20105688	3R_20105688_SNP [dm3] 3R_24279966_SNP [dm6]	T	G	2.590e^-4	1	NON_SYNONYMOUS_CODING CG13611	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	25790726	3R_25790726_INS [dm3] 3R_29965004_INS [dm6]	G	GTG	2.596e^-4	1	INTRON TkR99D
X	8683294	X_8683294_SNP [dm3] X_8789261_SNP [dm6]	C	G	2.602e^-4	1	INTRON Lim1
X	12907326	X_12907326_SNP [dm3] X_13013293_SNP [dm6]	G	A	2.608e^-4	1	INTRON rad
2L	8629367	2L_8629367_SNP [dm3] 2L_8629367_SNP [dm6]	C	T	2.616e^-4	1	INTRON Sema-1a
2R	11499640	2R_11499640_SNP [dm3] 2R_15612135_SNP [dm6]	G	A	2.623e^-4	1	INTERGENIC
2R	11503093	2R_11503093_SNP [dm3] 2R_15615588_SNP [dm6]	G	T	2.623e^-4	1	INTRON CG42524
3L	3898641	3L_3898641_SNP [dm3] 3L_3898641_SNP [dm6]	A	G	2.634e^-4	1	SYNONYMOUS_CODING Ccz1 DOWNSTREAM Ubi-p63E	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	10194654	X_10194654_SNP [dm3] X_10300621_SNP [dm6]	C	G	2.634e^-4	1	INTRON alpha-Man-I
X	10194657	X_10194657_SNP [dm3] X_10300624_SNP [dm6]	A	G	2.634e^-4	1	INTRON alpha-Man-I
2R	11499396	2R_11499396_SNP [dm3] 2R_15611891_SNP [dm6]	A	G	2.639e^-4	1	INTERGENIC
2R	5778612	2R_5778612_SNP [dm3] 2R_9891107_SNP [dm6]	G	A	2.639e^-4	1	UTR_3_PRIME CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2R	14146313	2R_14146313_SNP [dm3] 2R_18258808_SNP [dm6]	C	T	2.640e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2076086	3L_2076086_SNP [dm3] 3L_2076086_SNP [dm6]	T	C	2.662e^-4	1	INTRON sls
2R	16168236	2R_16168236_SNP [dm3] 2R_20280731_SNP [dm6]	T	C	2.671e^-4	1	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2L	6972113	2L_6972113_SNP [dm3] 2L_6972113_SNP [dm6]	A	G	2.671e^-4	1	UPSTREAM CR43142 & 1 other DOWNSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1
3L	14511616	3L_14511616_SNP [dm3] 3L_14518516_SNP [dm6]	T	G	2.679e^-4	1	DOWNSTREAM CG9592 INTRON bbg
3R	25893842	3R_25893842_SNP [dm3] 3R_30068120_SNP [dm6]	T	A	2.687e^-4	1	INTRON sima
3L	17492138	3L_17492138_SNP [dm3] 3L_17499038_SNP [dm6]	C	A	2.699e^-4	1	INTRON Oatp74D
X	13389363	X_13389363_SNP [dm3] X_13495330_SNP [dm6]	C	A	2.701e^-4	1	INTRON Neto
X	3748707	X_3748707_SNP [dm3] X_3854674_SNP [dm6]	T	A	2.703e^-4	1	SYNONYMOUS_CODING ec	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	20044312	X_20044312_SNP [dm3] X_20150279_SNP [dm6]	T	A	2.704e^-4	1	INTRON CG9572
X	6269740	X_6269740_SNP [dm3] X_6375707_SNP [dm6]	C	G	2.707e^-4	1	INTERGENIC
2L	318414	2L_318414_SNP [dm3] 2L_318414_SNP [dm6]	T	A	2.707e^-4	1	UTR_3_PRIME CG11912 INTRON Plc21C	TF binding site mE1_TFBS_cad
2R	5625887	2R_5625887_SNP [dm3] 2R_9738382_SNP [dm6]	C	T	2.731e^-4	1	INTRON sqa
2R	13720944	2R_13720944_SNP [dm3] 2R_17833439_SNP [dm6]	C	A	2.738e^-4	1	INTRON grh
3R	26655606	3R_26655606_SNP [dm3] 3R_30829884_SNP [dm6]	G	A	2.739e^-4	1	INTRON CG15544
2L	6293717	2L_6293717_SNP [dm3] 2L_6293717_SNP [dm6]	A	T	2.753e^-4	1	INTRON Ddr
2R	9974100	2R_9974100_SNP [dm3] 2R_14086595_SNP [dm6]	A	C	2.754e^-4	1	INTRON Prosap
X	6323115	X_6323115_SNP [dm3] X_6429082_SNP [dm6]	T	G	2.757e^-4	1	INTRON CG42340
3L	11851245	3L_11851245_SNP [dm3] 3L_11858145_SNP [dm6]	T	A	2.766e^-4	1	INTRON CG44837
3R	25188883	3R_25188883_SNP [dm3] 3R_29363161_SNP [dm6]	C	G	2.768e^-4	1	INTERGENIC
2L	10345545	2L_10345545_SNP [dm3] 2L_10345545_SNP [dm6]	T	C	2.775e^-4	1	SYNONYMOUS_CODING CG5022
2L	6986557	2L_6986557_SNP [dm3] 2L_6986557_SNP [dm6]	A	G	2.781e^-4	1	INTRON uif EXON CR44326
3R	23053981	3R_23053981_SNP [dm3] 3R_27228259_SNP [dm6]	G	A	2.800e^-4	1	SYNONYMOUS_CODING CG42813 DOWNSTREAM CG42814	TF binding site mE1_TFBS_cad
3R	19115656	3R_19115656_SNP [dm3] 3R_23289934_SNP [dm6]	C	T	2.801e^-4	1	SYNONYMOUS_CODING CG4434 DOWNSTREAM pnt
3L	11851270	3L_11851270_SNP [dm3] 3L_11858170_SNP [dm6]	C	T	2.802e^-4	1	INTRON CG44837
3R	19916448	3R_19916448_SNP [dm3] 3R_24090726_SNP [dm6]	C	A	2.806e^-4	1	INTRON 4EHP
2R	9538009	2R_9538009_SNP [dm3] 2R_13650504_SNP [dm6]	G	T	2.807e^-4	1	INTRON fas
3R	12965670	3R_12965670_SNP [dm3] 3R_17139948_SNP [dm6]	T	C	2.810e^-4	1	NON_SYNONYMOUS_CODING CG5265
2L	4400496	2L_4400496_SNP [dm3] 2L_4400496_SNP [dm6]	C	T	2.811e^-4	1	UPSTREAM CG33003 DOWNSTREAM l_2_k05819 INTERGENIC
X	3045647	X_3045647_INS [dm3] X_3151614_INS [dm6]	G	GCTGGTTGGTTGCTCGATTG...	2.812e^-4	1	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	1301554	X_1301554_SNP [dm3] X_1407521_SNP [dm6]	A	G	2.817e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	493885	2L_493885_SNP [dm3] 2L_493885_SNP [dm6]	A	G	2.832e^-4	1	INTRON ush
2R	7352831	2R_7352831_SNP [dm3] 2R_11465326_SNP [dm6]	T	C	2.861e^-4	1	DOWNSTREAM E_Pc_ INTERGENIC
2R	14426681	2R_14426681_SNP [dm3] 2R_18539176_SNP [dm6]	G	C	2.866e^-4	1	UTR_3_PRIME CG45087 & 1 other UPSTREAM Rgk2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3708165	X_3708165_SNP [dm3] X_3814132_SNP [dm6]	A	G	2.869e^-4	1	INTRON ec
2L	10094796	2L_10094796_SNP [dm3] 2L_10094796_SNP [dm6]	T	C	2.869e^-4	1	INTRON CG44153 & 1 other
3L	12374579	3L_12374579_SNP [dm3] 3L_12381479_SNP [dm6]	G	A	2.883e^-4	1	INTRON Ncc69	TF binding site mE1_TFBS_inv
2L	6293967	2L_6293967_DEL [dm3] 2L_6293967_DEL [dm6]	AAAGTCAAACATAAACTGCG...	A	2.899e^-4	1	INTRON Ddr
X	7056128	X_7056128_SNP [dm3] X_7162095_SNP [dm6]	G	C	2.911e^-4	1	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	10059187	X_10059187_SNP [dm3] X_10165154_SNP [dm6]	T	C	2.913e^-4	1	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_chinmo
3R	15137458	3R_15137458_SNP [dm3] 3R_19311736_SNP [dm6]	C	A	2.918e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	15137459	3R_15137459_SNP [dm3] 3R_19311737_SNP [dm6]	C	A	2.918e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	15137469	3R_15137469_SNP [dm3] 3R_19311747_SNP [dm6]	T	C	2.918e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	6246526	3L_6246526_SNP [dm3] 3L_6253426_SNP [dm6]	T	A	2.919e^-4	1	INTRON Best2	TF binding site BDTNP1_TFBS_dl
2L	9212976	2L_9212976_SNP [dm3] 2L_9212976_SNP [dm6]	C	A	2.942e^-4	1	INTRON tai
3R	14516932	3R_14516932_SNP [dm3] 3R_18691210_SNP [dm6]	A	C	2.954e^-4	1	INTRON Muc91C
3R	11689804	3R_11689804_SNP [dm3] 3R_15864082_SNP [dm6]	T	C	2.967e^-4	1	INTRON CG31183
2R	5630028	2R_5630028_SNP [dm3] 2R_9742523_SNP [dm6]	T	A	2.984e^-4	1	INTRON sqa
3R	2611536	3R_2611536_DEL [dm3] 3R_6785814_DEL [dm6]	AA	A	2.986e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_inv
2R	16168235	2R_16168235_SNP [dm3] 2R_20280730_SNP [dm6]	A	G	2.995e^-4	1	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
3L	15024624	3L_15024624_SNP [dm3] 3L_15031524_SNP [dm6]	C	T	3.011e^-4	1	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10515816	2L_10515816_SNP [dm3] 2L_10515816_SNP [dm6]	A	T	3.025e^-4	1	INTRON Fatp & 1 other
X	3747702	X_3747702_SNP [dm3] X_3853669_SNP [dm6]	C	T	3.029e^-4	1	SYNONYMOUS_CODING ec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25770229	3R_25770229_SNP [dm3] 3R_29944507_SNP [dm6]	G	A	3.048e^-4	1	INTRON CG15523
3R	18445069	3R_18445069_SNP [dm3] 3R_22619347_SNP [dm6]	A	G	3.049e^-4	1	SYNONYMOUS_CODING mRpL45 DOWNSTREAM loco	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6246398	3L_6246398_SNP [dm3] 3L_6253298_SNP [dm6]	A	T	3.068e^-4	1	INTRON Best2	TF binding site BDTNP1_TFBS_dl
2R	13993383	2R_13993383_SNP [dm3] 2R_18105878_SNP [dm6]	G	A	3.076e^-4	1	INTRON CG5756
3R	598201	3R_598201_SNP [dm3] 3R_4772479_SNP [dm6]	G	T	3.087e^-4	1	INTRON atms & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	14386799	X_14386799_SNP [dm3] X_14492766_SNP [dm6]	A	G	3.102e^-4	1	INTERGENIC
3L	19512027	3L_19512027_SNP [dm3] 3L_19518927_SNP [dm6]	G	A	3.103e^-4	1	UPSTREAM Cpr76Ba & 1 other INTERGENIC
2L	12173729	2L_12173729_SNP [dm3] 2L_12173729_SNP [dm6]	C	G	3.107e^-4	1	UTR_3_PRIME crok DOWNSTREAM CR43356	TF binding site BDTNP1_TFBS_hb
3R	6663310	3R_6663310_SNP [dm3] 3R_10837588_SNP [dm6]	G	A	3.108e^-4	1	INTRON Cad86C
2L	6293910	2L_6293910_SNP [dm3] 2L_6293910_SNP [dm6]	G	T	3.112e^-4	1	INTRON Ddr
X	13364815	X_13364815_SNP [dm3] X_13470782_SNP [dm6]	C	T	3.115e^-4	1	INTRON Neto
2R	15564906	2R_15564906_SNP [dm3] 2R_19677401_SNP [dm6]	T	C	3.116e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10109831	2R_10109831_SNP [dm3] 2R_14222326_SNP [dm6]	G	C	3.117e^-4	1	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5328244	2L_5328244_SNP [dm3] 2L_5328244_SNP [dm6]	T	A	3.125e^-4	1	DOWNSTREAM cype INTRON CG14022
3R	20314345	3R_20314345_SNP [dm3] 3R_24488623_SNP [dm6]	G	A	3.150e^-4	1	UPSTREAM mir-1017 INTRON nAChRalpha2 EXON mir-1017
3L	8233098	3L_8233098_SNP [dm3] 3L_8239998_SNP [dm6]	G	A	3.150e^-4	1	SYNONYMOUS_CODING CG7213 INTRON Dscam4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1684397	3L_1684397_SNP [dm3] 3L_1684397_SNP [dm6]	T	G	3.155e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_chinmo
2R	18657397	2R_18657397_SNP [dm3] 2R_22769892_SNP [dm6]	C	A	3.164e^-4	1	INTRON CG42260
X	10194656	X_10194656_SNP [dm3] X_10300623_SNP [dm6]	C	T	3.173e^-4	1	INTRON alpha-Man-I
3L	20552407	3L_20552407_SNP [dm3] 3L_20559307_SNP [dm6]	C	T	3.175e^-4	1	INTERGENIC
3L	5066000	3L_5066000_SNP [dm3] 3L_5066000_SNP [dm6]	T	C	3.179e^-4	1	INTRON Con
3L	2159586	3L_2159586_SNP [dm3] 3L_2159586_SNP [dm6]	A	T	3.183e^-4	1	INTRON CG15822	TF binding site mE1_TFBS_inv
3L	3771408	3L_3771408_SNP [dm3] 3L_3771408_SNP [dm6]	C	T	3.184e^-4	1	INTRON CG32264
X	3376121	X_3376121_SNP [dm3] X_3482088_SNP [dm6]	A	G	3.185e^-4	1	UTR_5_PRIME CG10804 UPSTREAM CG10802 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	16030165	3R_16030165_SNP [dm3] 3R_20204443_SNP [dm6]	C	T	3.189e^-4	1	UPSTREAM Nlg4 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	18424751	2R_18424751_SNP [dm3] 2R_22537246_SNP [dm6]	T	G	3.190e^-4	1	SYNONYMOUS_CODING px
3R	16577291	3R_16577291_SNP [dm3] 3R_20751569_SNP [dm6]	A	G	3.192e^-4	1	INTRON CG42322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17691234	2R_17691234_SNP [dm3] 2R_21803729_SNP [dm6]	G	A	3.215e^-4	1	EXON CR9284
2L	9345433	2L_9345433_SNP [dm3] 2L_9345433_SNP [dm6]	C	T	3.220e^-4	1	DOWNSTREAM CG3748 INTERGENIC
3L	18008414	3L_18008414_SNP [dm3] 3L_18015314_SNP [dm6]	C	T	3.222e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6351802	2L_6351802_SNP [dm3] 2L_6351802_SNP [dm6]	T	G	3.223e^-4	1	UPSTREAM CG9498 DOWNSTREAM ppk7 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	1246810	2R_1246810_SNP [dm3] 2R_5359305_SNP [dm6]	A	G	3.229e^-4	1	INTERGENIC	transposable element FlyBase
2R	14660864	2R_14660864_SNP [dm3] 2R_18773359_SNP [dm6]	G	A	3.235e^-4	1	INTRON Mctp
2R	14971187	2R_14971187_DEL [dm3] 2R_19083682_DEL [dm6]	CA	C	3.254e^-4	1	INTRON 5-HT1A
2L	4102862	2L_4102862_SNP [dm3] 2L_4102862_SNP [dm6]	G	A	3.261e^-4	1	INTRON ed
2L	4102868	2L_4102868_SNP [dm3] 2L_4102868_SNP [dm6]	G	A	3.261e^-4	1	INTRON ed
2R	19447046	2R_19447046_SNP [dm3] 2R_23559523_SNP [dm6]	C	G	3.273e^-4	1	NON_SYNONYMOUS_CODING ItgalphaPS5 UPSTREAM Pi3K59F	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	1868740	3R_1868740_INS [dm3] 3R_6043018_INS [dm6]	A	ATATCC	3.281e^-4	1	INTERGENIC
2L	21179564	2L_21179564_SNP [dm3] 2L_21179564_SNP [dm6]	A	G	3.284e^-4	1	UTR_5_PRIME bur UPSTREAM Mcm10 EXON CR44911	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16986186	3L_16986186_SNP [dm3] 3L_16993086_SNP [dm6]	T	C	3.290e^-4	1	SYNONYMOUS_CODING Exn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6143535	2L_6143535_SNP [dm3] 2L_6143535_SNP [dm6]	G	A	3.309e^-4	1	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13488915	3L_13488915_SNP [dm3] 3L_13495815_SNP [dm6]	T	A	3.315e^-4	1	SYNONYMOUS_CODING Tgi INTRON Tgi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18657620	2R_18657620_SNP [dm3] 2R_22770115_SNP [dm6]	A	G	3.317e^-4	1	INTRON CG42260
3R	25786496	3R_25786496_SNP [dm3] 3R_29960774_SNP [dm6]	C	G	3.347e^-4	1	INTRON TkR99D
3L	10465626	3L_10465626_SNP [dm3] 3L_10472526_SNP [dm6]	G	A	3.349e^-4	1	INTERGENIC
2R	14660862	2R_14660862_SNP [dm3] 2R_18773357_SNP [dm6]	G	A	3.363e^-4	1	INTRON Mctp
3R	16758087	3R_16758087_SNP [dm3] 3R_20932365_SNP [dm6]	T	G	3.381e^-4	1	INTRON CG31191
3R	7745979	3R_7745979_SNP [dm3] 3R_11920257_SNP [dm6]	T	C	3.381e^-4	1	INTRON Cad87A
3L	6844972	3L_6844972_SNP [dm3] 3L_6851872_SNP [dm6]	A	T	3.392e^-4	1	INTERGENIC
3L	2702368	3L_2702368_SNP [dm3] 3L_2702368_SNP [dm6]	C	T	3.393e^-4	1	INTRON Fife
3R	11689817	3R_11689817_SNP [dm3] 3R_15864095_SNP [dm6]	C	T	3.404e^-4	1	INTRON CG31183
3R	11689820	3R_11689820_MNP [dm3] 3R_15864098_MNP [dm6]	CCA	GAT	3.404e^-4	1	INTRON CG31183
3R	11689824	3R_11689824_MNP [dm3] 3R_15864102_MNP [dm6]	GGGAA	TTATT	3.404e^-4	1	INTRON CG31183
3R	1888643	3R_1888643_SNP [dm3] 3R_6062921_SNP [dm6]	C	T	3.405e^-4	1	INTERGENIC
3L	12880620	3L_12880620_SNP [dm3] 3L_12887520_SNP [dm6]	G	C	3.427e^-4	1	SYNONYMOUS_CODING CG14120
3L	14016672	3L_14016672_SNP [dm3] 3L_14023572_SNP [dm6]	A	T	3.436e^-4	1	INTRON ptip	TF binding site mE1_TFBS_chinmo
2R	14758273	2R_14758273_SNP [dm3] 2R_18870768_SNP [dm6]	G	A	3.437e^-4	1	INTERGENIC
2L	4285236	2L_4285236_SNP [dm3] 2L_4285236_SNP [dm6]	A	C	3.438e^-4	1	INTRON tutl	TF binding site BDTNP1_TFBS_dl
X	21385153	X_21385153_SNP [dm3] X_21514126_SNP [dm6]	G	A	3.438e^-4	1	INTRON CR45082
3L	19387652	3L_19387652_INS [dm3] 3L_19394552_INS [dm6]	T	TCT	3.439e^-4	1	INTRON CG32206
2R	5783798	2R_5783798_SNP [dm3] 2R_9896293_SNP [dm6]	G	T	3.446e^-4	1	NON_SYNONYMOUS_CODING CG30007
2L	6829740	2L_6829740_SNP [dm3] 2L_6829740_SNP [dm6]	G	T	3.448e^-4	1	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16693170	3R_16693170_SNP [dm3] 3R_20867448_SNP [dm6]	G	A	3.450e^-4	1	INTERGENIC
3R	2618958	3R_2618958_SNP [dm3] 3R_6793236_SNP [dm6]	T	A	3.462e^-4	1	INTRON Dfd
3L	6246393	3L_6246393_SNP [dm3] 3L_6253293_SNP [dm6]	C	T	3.466e^-4	1	INTRON Best2	TF binding site BDTNP1_TFBS_dl
2L	466195	2L_466195_SNP [dm3] 2L_466195_SNP [dm6]	T	A	3.468e^-4	1	INTRON CG4297
2R	5625453	2R_5625453_SNP [dm3] 2R_9737948_SNP [dm6]	C	G	3.469e^-4	1	INTRON sqa
3R	20309118	3R_20309118_SNP [dm3] 3R_24483396_SNP [dm6]	G	C	3.470e^-4	1	INTERGENIC
3R	4669300	3R_4669300_SNP [dm3] 3R_8843578_SNP [dm6]	T	A	3.472e^-4	1	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13750855	2R_13750855_SNP [dm3] 2R_17863350_SNP [dm6]	C	T	3.472e^-4	1	SYNONYMOUS_CODING thr
2R	4792957	2R_4792957_SNP [dm3] 2R_8905452_SNP [dm6]	G	T	3.481e^-4	1	SYNONYMOUS_CODING CG8258 DOWNSTREAM Ggamma1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	17180594	3R_17180594_SNP [dm3] 3R_21354872_SNP [dm6]	T	A	3.483e^-4	1	DOWNSTREAM mod_mdg4_ & 6 others INTRON mod_mdg4_
3R	18594089	3R_18594089_SNP [dm3] 3R_22768367_SNP [dm6]	G	T	3.484e^-4	1	NON_SYNONYMOUS_CODING CG43091 UPSTREAM CG13841 DOWNSTREAM CG43092 INTRON Usp12-46 & 1 other
2L	7566264	2L_7566264_SNP [dm3] 2L_7566264_SNP [dm6]	C	A	3.485e^-4	1	INTRON RapGAP1
2R	19942643	2R_19942643_SNP [dm3] 2R_24055120_SNP [dm6]	G	A	3.491e^-4	1	UPSTREAM CG13563 INTRON ppk29
2L	4710173	2L_4710173_SNP [dm3] 2L_4710173_SNP [dm6]	G	A	3.524e^-4	1	INTRON CG34351
2R	13407535	2R_13407535_SNP [dm3] 2R_17520030_SNP [dm6]	C	T	3.530e^-4	1	UTR_3_PRIME Patronin DOWNSTREAM Patronin
3L	8648483	3L_8648483_SNP [dm3] 3L_8655383_SNP [dm6]	A	G	3.532e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5439908	2L_5439908_SNP [dm3] 2L_5439908_SNP [dm6]	T	C	3.534e^-4	1	UPSTREAM CR31647 INTERGENIC
2R	19500301	2R_19500301_SNP [dm3] 2R_23612778_SNP [dm6]	T	C	3.541e^-4	1	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	16168258	2R_16168258_SNP [dm3] 2R_20280753_SNP [dm6]	C	T	3.546e^-4	1	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2L	3101910	2L_3101910_SNP [dm3] 2L_3101910_SNP [dm6]	T	C	3.547e^-4	1	INTRON toc
3R	1869808	3R_1869808_SNP [dm3] 3R_6044086_SNP [dm6]	A	G	3.558e^-4	1	INTERGENIC
2L	6148119	2L_6148119_SNP [dm3] 2L_6148119_SNP [dm6]	T	C	3.560e^-4	1	INTERGENIC
2R	13240527	2R_13240527_DEL [dm3] 2R_17353022_DEL [dm6]	AAAA	A	3.565e^-4	1	UTR_3_PRIME mbl INTRON mbl
3R	2028587	3R_2028587_SNP [dm3] 3R_6202865_SNP [dm6]	G	C	3.568e^-4	1	INTRON Osi24
X	9427131	X_9427131_SNP [dm3] X_9533098_SNP [dm6]	T	A	3.573e^-4	1	UPSTREAM CG34026 INTRON CG32700
2R	17879259	2R_17879259_SNP [dm3] 2R_21991754_SNP [dm6]	C	T	3.582e^-4	1	INTRON CG34370
2R	5625134	2R_5625134_DEL [dm3] 2R_9737629_DEL [dm6]	CAGCAGCA	C	3.584e^-4	1	INTRON sqa
2L	485502	2L_485502_SNP [dm3] 2L_485502_SNP [dm6]	C	T	3.598e^-4	1	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6424005	2L_6424005_SNP [dm3] 2L_6424005_SNP [dm6]	A	G	3.601e^-4	1	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14113580	2L_14113580_SNP [dm3] 2L_14113580_SNP [dm6]	G	A	3.611e^-4	1	INTERGENIC
3R	887826	3R_887826_SNP [dm3] 3R_5062104_SNP [dm6]	C	A	3.619e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9010453	3L_9010453_SNP [dm3] 3L_9017353_SNP [dm6]	T	C	3.621e^-4	1	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	10070257	3R_10070257_SNP [dm3] 3R_14244535_SNP [dm6]	G	A	3.634e^-4	1	NON_SYNONYMOUS_CODING CG43291 DOWNSTREAM CG9616
2R	5606739	2R_5606739_SNP [dm3] 2R_9719234_SNP [dm6]	G	A	3.634e^-4	1	SPLICE_SITE_REGION sqa INTRON sqa	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14980935	2R_14980935_SNP [dm3] 2R_19093430_SNP [dm6]	T	C	3.637e^-4	1	DOWNSTREAM Ir56a INTRON 5-HT1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10515691	2L_10515691_SNP [dm3] 2L_10515691_SNP [dm6]	T	A	3.644e^-4	1	INTRON Fatp & 1 other
2R	12267174	2R_12267174_SNP [dm3] 2R_16379669_SNP [dm6]	G	A	3.646e^-4	1	UPSTREAM CG43187 EXON CR45316 & 1 other
X	3171826	X_3171826_SNP [dm3] X_3277793_SNP [dm6]	G	A	3.652e^-4	1	INTRON dnc
2L	16147062	2L_16147062_SNP [dm3] 2L_16147062_SNP [dm6]	G	C	3.654e^-4	1	INTERGENIC
2R	18186684	2R_18186684_SNP [dm3] 2R_22299179_SNP [dm6]	T	C	3.662e^-4	1	SYNONYMOUS_CODING wdp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8083171	2L_8083171_SNP [dm3] 2L_8083171_SNP [dm6]	A	G	3.666e^-4	1	UPSTREAM Bsg & 1 other DOWNSTREAM CR45257 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	14917397	3R_14917397_INS [dm3] 3R_19091675_INS [dm6]	A	AA	3.669e^-4	1	INTRON cdi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19577575	3L_19577575_DEL [dm3] 3L_19584475_DEL [dm6]	GGG	G	3.674e^-4	1	UTR_5_PRIME Shal DOWNSTREAM CG9231	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14146312	2R_14146312_SNP [dm3] 2R_18258807_SNP [dm6]	A	C	3.677e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2775880	X_2775880_SNP [dm3] X_2881847_SNP [dm6]	T	C	3.677e^-4	1	DOWNSTREAM CG14418 INTRON kirre
3R	19659500	3R_19659500_SNP [dm3] 3R_23833778_SNP [dm6]	T	A	3.681e^-4	1	INTRON CG34355
3L	601113	3L_601113_SNP [dm3] 3L_601113_SNP [dm6]	C	T	3.690e^-4	1	INTRON CG13893	TF binding site mE1_TFBS_inv
2R	13720940	2R_13720940_INS [dm3] 2R_17833435_INS [dm6]	C	CTCCTCGCCCC...	3.697e^-4	1	INTRON grh
3L	2077298	3L_2077298_SNP [dm3] 3L_2077298_SNP [dm6]	T	C	3.701e^-4	1	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
3L	14040904	3L_14040904_SNP [dm3] 3L_14047804_SNP [dm6]	T	A	3.715e^-4	1	INTRON blue	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17180533	3R_17180533_SNP [dm3] 3R_21354811_SNP [dm6]	A	C	3.716e^-4	1	DOWNSTREAM mod_mdg4_ & 6 others INTRON mod_mdg4_
3R	19902534	3R_19902534_DEL [dm3] 3R_24076812_DEL [dm6]	ACGTATTT	A	3.723e^-4	1	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1252623	3L_1252623_SNP [dm3] 3L_1252623_SNP [dm6]	G	A	3.725e^-4	1	NON_SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18252574	3R_18252574_SNP [dm3] 3R_22426852_SNP [dm6]	C	T	3.731e^-4	1	NON_SYNONYMOUS_CODING CG13847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10388184	3L_10388184_SNP [dm3] 3L_10395084_SNP [dm6]	A	T	3.737e^-4	1	INTERGENIC
X	12678571	X_12678571_SNP [dm3] X_12784538_SNP [dm6]	T	G	3.742e^-4	1	INTRON CG32647
3R	23053957	3R_23053957_SNP [dm3] 3R_27228235_SNP [dm6]	A	G	3.746e^-4	1	SYNONYMOUS_CODING CG42813 DOWNSTREAM CG42814	TF binding site mE1_TFBS_cad
3L	16298742	3L_16298742_SNP [dm3] 3L_16305642_SNP [dm6]	G	C	3.748e^-4	1	SYNONYMOUS_CODING CG13043 UPSTREAM CG13063 DOWNSTREAM CG43249	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	18302484	3L_18302484_SNP [dm3] 3L_18309384_SNP [dm6]	A	G	3.751e^-4	1	INTERGENIC
2R	13929630	2R_13929630_SNP [dm3] 2R_18042125_SNP [dm6]	A	C	3.754e^-4	1	DOWNSTREAM CG5773 INTERGENIC
2L	1931216	2L_1931216_SNP [dm3] 2L_1931216_SNP [dm6]	T	G	3.772e^-4	1	INTRON CG7337
3L	5903378	3L_5903378_SNP [dm3] 3L_5910278_SNP [dm6]	C	T	3.775e^-4	1	DOWNSTREAM CG13288 INTRON CG13288
2L	10481726	2L_10481726_SNP [dm3] 2L_10481726_SNP [dm6]	G	A	3.777e^-4	1	INTRON RluA-2
2L	459193	2L_459193_SNP [dm3] 2L_459193_SNP [dm6]	G	C	3.779e^-4	1	UTR_3_PRIME CG4297 DOWNSTREAM CG4133
2R	5111467	2R_5111467_SNP [dm3] 2R_9223962_SNP [dm6]	A	C	3.786e^-4	1	INTERGENIC
2L	3964757	2L_3964757_SNP [dm3] 2L_3964757_SNP [dm6]	C	A	3.788e^-4	1	INTRON fred
2L	2613535	2L_2613535_SNP [dm3] 2L_2613535_SNP [dm6]	G	A	3.793e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14330647	3L_14330647_SNP [dm3] 3L_14337547_SNP [dm6]	A	G	3.793e^-4	1	INTRON fz
3R	19770255	3R_19770255_SNP [dm3] 3R_23944533_SNP [dm6]	G	A	3.797e^-4	1	SYNONYMOUS_CODING CG12268	TF binding site mE1_TFBS_cad
3R	24938674	3R_24938674_SNP [dm3] 3R_29112952_SNP [dm6]	G	A	3.797e^-4	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12422152	2L_12422152_SNP [dm3] 2L_12422152_SNP [dm6]	G	C	3.801e^-4	1	UPSTREAM vir-1 INTRON vir-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11253058	3L_11253058_SNP [dm3] 3L_11259958_SNP [dm6]	C	A	3.809e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14945061	3R_14945061_SNP [dm3] 3R_19119339_SNP [dm6]	G	A	3.834e^-4	1	INTRON CG6040
X	13156486	X_13156486_SNP [dm3] X_13262453_SNP [dm6]	T	A	3.841e^-4	1	UTR_3_PRIME comt DOWNSTREAM HDAC4
3L	7949087	3L_7949087_SNP [dm3] 3L_7955987_SNP [dm6]	C	A	3.844e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	19853729	X_19853729_SNP [dm3] X_19959696_SNP [dm6]	C	T	3.847e^-4	1	UPSTREAM CG12655 INTERGENIC
X	11614856	X_11614856_SNP [dm3] X_11720823_SNP [dm6]	G	A	3.855e^-4	1	SYNONYMOUS_CODING Tango10 DOWNSTREAM prtp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15381435	2R_15381435_SNP [dm3] 2R_19493930_SNP [dm6]	C	A	3.861e^-4	1	UTR_3_PRIME Rep DOWNSTREAM hpo
2R	5625952	2R_5625952_SNP [dm3] 2R_9738447_SNP [dm6]	G	T	3.867e^-4	1	INTRON sqa
3L	14224524	3L_14224524_SNP [dm3] 3L_14231424_SNP [dm6]	G	T	3.871e^-4	1	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	1305442	X_1305442_SNP [dm3] X_1411409_SNP [dm6]	G	A	3.875e^-4	1	UPSTREAM futsch INTRON futsch	TF binding site BDTNP1_TFBS_dl
3R	17534994	3R_17534994_SNP [dm3] 3R_21709272_SNP [dm6]	T	G	3.879e^-4	1	INTRON CG31176
3L	2196334	3L_2196334_SNP [dm3] 3L_2196334_SNP [dm6]	T	C	3.879e^-4	1	UPSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	531279	2L_531279_SNP [dm3] 2L_531279_SNP [dm6]	T	C	3.881e^-4	1	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9394788	3L_9394788_INS [dm3] 3L_9401688_INS [dm6]	G	GAGACTGCG	3.892e^-4	1	UTR_5_PRIME eIF-4E INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10308658	3L_10308658_DEL [dm3] 3L_10315558_DEL [dm6]	AA	A	3.894e^-4	1	INTERGENIC
2L	1658964	2L_1658964_SNP [dm3] 2L_1658964_SNP [dm6]	C	T	3.896e^-4	1	INTRON chinmo	TF binding site mE1_TFBS_Trl
2R	18194466	2R_18194466_SNP [dm3] 2R_22306961_SNP [dm6]	C	T	3.908e^-4	1	INTRON wdp
X	21208394	X_21208394_SNP [dm3] X_21337367_SNP [dm6]	C	A	3.908e^-4	1	INTRON tty	TF binding site BDTNP1_TFBS_dl
2R	18657356	2R_18657356_SNP [dm3] 2R_22769851_SNP [dm6]	T	C	3.909e^-4	1	INTRON CG42260
X	14841983	X_14841983_SNP [dm3] X_14947950_SNP [dm6]	A	G	3.918e^-4	1	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4293307	3R_4293307_SNP [dm3] 3R_8467585_SNP [dm6]	T	C	3.931e^-4	1	INTRON CG45263	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4293309	3R_4293309_SNP [dm3] 3R_8467587_SNP [dm6]	A	T	3.931e^-4	1	INTRON CG45263	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19276249	2L_19276249_SNP [dm3] 2L_19276249_SNP [dm6]	T	G	3.935e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2202516	3L_2202516_SNP [dm3] 3L_2202516_SNP [dm6]	A	T	3.952e^-4	1	INTERGENIC
X	17269411	X_17269411_DEL [dm3] X_17375378_DEL [dm6]	TGC	T	3.969e^-4	1	INTERGENIC
3R	921226	3R_921226_SNP [dm3] 3R_5095504_SNP [dm6]	C	T	3.970e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	327329	2L_327329_SNP [dm3] 2L_327329_SNP [dm6]	G	A	3.972e^-4	1	DOWNSTREAM CG43755 INTRON Plc21C & 1 other
X	5870201	X_5870201_SNP [dm3] X_5976168_SNP [dm6]	C	T	3.980e^-4	1	INTRON Grip
2R	6402960	2R_6402960_SNP [dm3] 2R_10515455_SNP [dm6]	T	C	3.984e^-4	1	UTR_3_PRIME lola INTRON lola
3R	20332003	3R_20332003_INS [dm3] 3R_24506281_INS [dm6]	A	ATT	3.986e^-4	1	INTERGENIC	transposable element FlyBase
3R	20332055	3R_20332055_SNP [dm3] 3R_24506333_SNP [dm6]	G	A	3.986e^-4	1	INTERGENIC
3L	18323981	3L_18323981_SNP [dm3] 3L_18330881_SNP [dm6]	T	A	4.039e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3708173	X_3708173_SNP [dm3] X_3814140_SNP [dm6]	C	A	4.042e^-4	1	INTRON ec
3R	21183563	3R_21183563_SNP [dm3] 3R_25357841_SNP [dm6]	A	G	4.070e^-4	1	UPSTREAM CG11913 INTRON Fur1
2R	16078640	2R_16078640_SNP [dm3] 2R_20191135_SNP [dm6]	C	G	4.078e^-4	1	INTERGENIC
2L	6424633	2L_6424633_SNP [dm3] 2L_6424633_SNP [dm6]	T	C	4.078e^-4	1	SYNONYMOUS_CODING Fic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	20630930	3R_20630930_DEL [dm3] 3R_24805208_DEL [dm6]	AA	A	4.080e^-4	1	UTR_5_PRIME polybromo DOWNSTREAM CG5807	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12946830	2R_12946830_SNP [dm3] 2R_17059325_SNP [dm6]	T	G	4.081e^-4	1	DOWNSTREAM CG8950 & 1 other INTERGENIC
2R	15593546	2R_15593546_SNP [dm3] 2R_19706041_SNP [dm6]	T	A	4.082e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	4875604	3R_4875604_SNP [dm3] 3R_9049882_SNP [dm6]	T	A	4.093e^-4	1	UPSTREAM Nmdmc & 1 other INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12211993	2L_12211993_DEL [dm3] 2L_12211993_DEL [dm6]	CC	C	4.096e^-4	1	INTRON aret
3L	9187213	3L_9187213_SNP [dm3] 3L_9194113_SNP [dm6]	T	A	4.112e^-4	1	INTERGENIC
3L	18542881	3L_18542881_SNP [dm3] 3L_18549781_SNP [dm6]	A	T	4.127e^-4	1	INTERGENIC
3R	10543914	3R_10543914_SNP [dm3] 3R_14718192_SNP [dm6]	C	T	4.133e^-4	1	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8213268	3R_8213268_DEL [dm3] 3R_12387546_DEL [dm6]	AGCTA	A	4.160e^-4	1	UTR_5_PRIME CG33098 UPSTREAM CG33098 INTRON CG34402	TF binding site mE1_TFBS_cad
X	14682376	X_14682376_SNP [dm3] X_14788343_SNP [dm6]	C	T	4.162e^-4	1	UTR_3_PRIME rut DOWNSTREAM CR45522
3L	3457244	3L_3457244_SNP [dm3] 3L_3457244_SNP [dm6]	G	A	4.165e^-4	1	SYNONYMOUS_CODING eIF5B	TF binding site mE1_TFBS_cad
X	5571880	X_5571880_SNP [dm3] X_5677847_SNP [dm6]	A	C	4.173e^-4	1	UPSTREAM Tre1 INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15575938	3R_15575938_SNP [dm3] 3R_19750216_SNP [dm6]	G	A	4.179e^-4	1	INTRON GluClalpha
2R	5104902	2R_5104902_SNP [dm3] 2R_9217397_SNP [dm6]	C	T	4.179e^-4	1	INTERGENIC
3R	23402479	3R_23402479_DEL [dm3] 3R_27576757_DEL [dm6]	ACA	A	4.188e^-4	1	INTRON wdb
2L	4874572	2L_4874572_SNP [dm3] 2L_4874572_SNP [dm6]	T	G	4.206e^-4	1	UTR_3_PRIME pog INTRON pog
3R	16314818	3R_16314818_SNP [dm3] 3R_20489096_SNP [dm6]	T	C	4.210e^-4	1	INTERGENIC
3R	25777085	3R_25777085_SNP [dm3] 3R_29951363_SNP [dm6]	G	A	4.212e^-4	1	UTR_3_PRIME TkR99D	TF binding site mE1_TFBS_chinmo
2L	489148	2L_489148_SNP [dm3] 2L_489148_SNP [dm6]	A	G	4.219e^-4	1	INTRON ush	TF binding site mE1_TFBS_Trl
3R	10137691	3R_10137691_SNP [dm3] 3R_14311969_SNP [dm6]	A	T	4.222e^-4	1	INTRON CG31321	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18355953	X_18355953_SNP [dm3] X_18461920_SNP [dm6]	A	G	4.242e^-4	1	INTRON CG32547 EXON CR43842	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17638062	3R_17638062_SNP [dm3] 3R_21812340_SNP [dm6]	C	G	4.243e^-4	1	INTRON CASK
X	20931074	X_20931074_SNP [dm3] X_21060047_SNP [dm6]	T	A	4.247e^-4	1	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	1302187	X_1302187_SNP [dm3] X_1408154_SNP [dm6]	T	C	4.266e^-4	1	UPSTREAM futsch INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3674136	3L_3674136_SNP [dm3] 3L_3674136_SNP [dm6]	T	C	4.269e^-4	1	INTERGENIC
3L	6840608	3L_6840608_SNP [dm3] 3L_6847508_SNP [dm6]	T	A	4.274e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12236818	2L_12236818_DEL [dm3] 2L_12236818_DEL [dm6]	CCAGC	C	4.275e^-4	1	INTRON aret	TF binding site mE1_TFBS_inv
2R	13751354	2R_13751354_SNP [dm3] 2R_17863849_SNP [dm6]	T	A	4.283e^-4	1	NON_SYNONYMOUS_CODING thr
3R	11125182	3R_11125182_SNP [dm3] 3R_15299460_SNP [dm6]	A	T	4.286e^-4	1	INTRON Tm1
3L	632792	3L_632792_SNP [dm3] 3L_632792_SNP [dm6]	T	C	4.290e^-4	1	EXON CR43334	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	12267235	2R_12267235_SNP [dm3] 2R_16379730_SNP [dm6]	T	C	4.297e^-4	1	UPSTREAM CG43187 EXON CR45316 & 1 other
2R	13224069	2R_13224069_SNP [dm3] 2R_17336564_SNP [dm6]	G	A	4.300e^-4	1	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	17688677	2R_17688677_SNP [dm3] 2R_21801172_SNP [dm6]	G	T	4.304e^-4	1	UPSTREAM CG4386 INTERGENIC
2R	5625893	2R_5625893_SNP [dm3] 2R_9738388_SNP [dm6]	G	T	4.306e^-4	1	INTRON sqa
2L	6424024	2L_6424024_SNP [dm3] 2L_6424024_SNP [dm6]	T	G	4.306e^-4	1	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10377510	3L_10377510_SNP [dm3] 3L_10384410_SNP [dm6]	C	T	4.307e^-4	1	INTERGENIC
2L	10592611	2L_10592611_SNP [dm3] 2L_10592611_SNP [dm6]	A	T	4.310e^-4	1	INTRON Trim9
2L	12172980	2L_12172980_SNP [dm3] 2L_12172980_SNP [dm6]	C	T	4.323e^-4	1	UPSTREAM crok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18025088	2R_18025088_INS [dm3] 2R_22137583_INS [dm6]	A	AAA	4.334e^-4	1	UTR_5_PRIME a INTRON a	TF binding site mE1_TFBS_run
2R	6026159	2R_6026159_SNP [dm3] 2R_10138654_SNP [dm6]	T	C	4.350e^-4	1	SYNONYMOUS_CODING CG12917 UPSTREAM Or46a DOWNSTREAM CR43467	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21959440	X_21959440_SNP [dm3] X_22557604_SNP [dm6]	T	C	4.379e^-4	1	INTERGENIC	transposable element FlyBase
3R	25153561	3R_25153561_DEL [dm3] 3R_29327839_DEL [dm6]	GGG	G	4.382e^-4	1	INTERGENIC
3R	7200767	3R_7200767_SNP [dm3] 3R_11375045_SNP [dm6]	C	T	4.398e^-4	1	SYNONYMOUS_CODING pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11503513	2R_11503513_SNP [dm3] 2R_15616008_SNP [dm6]	C	T	4.400e^-4	1	INTRON CG42524
3L	3327931	3L_3327931_SNP [dm3] 3L_3327931_SNP [dm6]	T	C	4.405e^-4	1	SYNONYMOUS_CODING PHGPx INTRON CG11526
2R	11571320	2R_11571320_SNP [dm3] 2R_15683815_SNP [dm6]	C	T	4.411e^-4	1	SYNONYMOUS_CODING Ranbp11 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8219978	3L_8219978_DEL [dm3] 3L_8226878_DEL [dm6]	AC	A	4.411e^-4	1	INTERGENIC
3L	17807673	3L_17807673_SNP [dm3] 3L_17814573_SNP [dm6]	C	T	4.414e^-4	1	UPSTREAM cln3 DOWNSTREAM Ir75a INTERGENIC
3R	23210301	3R_23210301_SNP [dm3] 3R_27384579_SNP [dm6]	T	A	4.414e^-4	1	INTRON side
3L	3412056	3L_3412056_SNP [dm3] 3L_3412056_SNP [dm6]	G	T	4.415e^-4	1	DOWNSTREAM mir-2282 INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	8798491	3L_8798491_SNP [dm3] 3L_8805391_SNP [dm6]	C	T	4.418e^-4	1	SYNONYMOUS_CODING CG34427 DOWNSTREAM CG13312	TF binding site mE1_TFBS_chinmo
2L	1931214	2L_1931214_SNP [dm3] 2L_1931214_SNP [dm6]	T	A	4.445e^-4	1	INTRON CG7337
2L	11045876	2L_11045876_INS [dm3] 2L_11045876_INS [dm6]	T	TT	4.457e^-4	1	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	2314605	3R_2314605_SNP [dm3] 3R_6488883_SNP [dm6]	A	C	4.463e^-4	1	UPSTREAM CG15186 INTRON CG15186
3R	13898549	3R_13898549_SNP [dm3] 3R_18072827_SNP [dm6]	T	G	4.481e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5871398	3L_5871398_SNP [dm3] 3L_5878298_SNP [dm6]	T	C	4.482e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18246625	3R_18246625_SNP [dm3] 3R_22420903_SNP [dm6]	G	T	4.483e^-4	1	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20631455	3R_20631455_SNP [dm3] 3R_24805733_SNP [dm6]	G	T	4.497e^-4	1	UTR_3_PRIME CG5807 UPSTREAM polybromo INTRON CG5807	TF binding site BDTNP1_TFBS_dl
X	3747984	X_3747984_SNP [dm3] X_3853951_SNP [dm6]	C	G	4.506e^-4	1	SYNONYMOUS_CODING ec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17219540	3L_17219540_SNP [dm3] 3L_17226440_SNP [dm6]	C	G	4.524e^-4	1	INTRON Rbp6
2L	3227777	2L_3227777_INS [dm3] 2L_3227777_INS [dm6]	C	CAT	4.527e^-4	1	INTERGENIC
2R	12471027	2R_12471027_SNP [dm3] 2R_16583522_SNP [dm6]	G	A	4.541e^-4	1	UPSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25789094	3R_25789094_SNP [dm3] 3R_29963372_SNP [dm6]	T	G	4.547e^-4	1	INTRON TkR99D
3L	4947246	3L_4947246_SNP [dm3] 3L_4947246_SNP [dm6]	T	C	4.562e^-4	1	INTRON Con
2R	19940886	2R_19940886_SNP [dm3] 2R_24053363_SNP [dm6]	G	A	4.574e^-4	1	DOWNSTREAM sei INTRON ppk29
X	11354509	X_11354509_DEL [dm3] X_11460476_DEL [dm6]	TAT	T	4.583e^-4	1	INTRON CG43155
3R	23600035	3R_23600035_SNP [dm3] 3R_27774313_SNP [dm6]	G	C	4.585e^-4	1	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3R	16029632	3R_16029632_SNP [dm3] 3R_20203910_SNP [dm6]	G	A	4.585e^-4	1	UPSTREAM Nlg4 INTERGENIC
X	9918763	X_9918763_INS [dm3] X_10024730_INS [dm6]	A	AA	4.586e^-4	1	INTRON Cht6
X	3760648	X_3760648_SNP [dm3] X_3866615_SNP [dm6]	T	C	4.593e^-4	1	UTR_5_PRIME yin INTRON yin	TF binding site mE1_TFBS_Trl
X	1300606	X_1300606_INS [dm3] X_1406573_INS [dm6]	G	GACTGCCG	4.597e^-4	1	INTERGENIC
2R	11496159	2R_11496159_SNP [dm3] 2R_15608654_SNP [dm6]	A	G	4.598e^-4	1	INTERGENIC
3R	26053698	3R_26053698_SNP [dm3] 3R_30227976_SNP [dm6]	G	A	4.602e^-4	1	INTERGENIC
X	5578921	X_5578921_INS [dm3] X_5684888_INS [dm6]	A	ACCATAAGCGATACGTTA...	4.602e^-4	1	DOWNSTREAM CG3160 & 1 other INTERGENIC
3R	22141783	3R_22141783_SNP [dm3] 3R_26316061_SNP [dm6]	T	A	4.606e^-4	1	INTERGENIC
3R	18912041	3R_18912041_SNP [dm3] 3R_23086319_SNP [dm6]	T	G	4.617e^-4	1	INTRON CG13830	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3748713	X_3748713_SNP [dm3] X_3854680_SNP [dm6]	A	G	4.628e^-4	1	SYNONYMOUS_CODING ec	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	18192461	3R_18192461_SNP [dm3] 3R_22366739_SNP [dm6]	G	A	4.650e^-4	1	UPSTREAM CG5382 & 1 other INTRON CG5380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	16031970	2R_16031970_SNP [dm3] 2R_20144465_SNP [dm6]	C	G	4.661e^-4	1	INTERGENIC
3L	10616407	3L_10616407_SNP [dm3] 3L_10623307_SNP [dm6]	C	T	4.662e^-4	1	NON_SYNONYMOUS_CODING CG42521
X	8590249	X_8590249_SNP [dm3] X_8696216_SNP [dm6]	C	T	4.679e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3747222	X_3747222_SNP [dm3] X_3853189_SNP [dm6]	T	A	4.683e^-4	1	SYNONYMOUS_CODING ec	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	20565526	2R_20565526_SNP [dm3] 2R_24678003_SNP [dm6]	T	C	4.693e^-4	1	INTRON Mmp1
3L	14666712	3L_14666712_SNP [dm3] 3L_14673612_SNP [dm6]	T	G	4.694e^-4	1	UPSTREAM tRNA:M3:70Fb DOWNSTREAM tRNA:M3:70Fa & 1 other INTRON ome	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2202508	3L_2202508_SNP [dm3] 3L_2202508_SNP [dm6]	G	A	4.703e^-4	1	INTERGENIC
2L	2254786	2L_2254786_SNP [dm3] 2L_2254786_SNP [dm6]	C	T	4.703e^-4	1	SYNONYMOUS_CODING Send1 DOWNSTREAM CG17234
2L	8142512	2L_8142512_SNP [dm3] 2L_8142512_SNP [dm6]	C	A	4.711e^-4	1	UPSTREAM mir-4984 DOWNSTREAM CG42762 INTRON CG8552
3R	19108205	3R_19108205_SNP [dm3] 3R_23282483_SNP [dm6]	T	C	4.718e^-4	1	SYNONYMOUS_CODING Cdc16	TF binding site mE1_TFBS_sens
3R	1838454	3R_1838454_DEL [dm3] 3R_6012732_DEL [dm6]	CAT	C	4.718e^-4	1	UPSTREAM CG10280 INTERGENIC
2R	15942488	2R_15942488_SNP [dm3] 2R_20054983_SNP [dm6]	A	C	4.719e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	21018239	3L_21018239_SNP [dm3] 3L_21025139_SNP [dm6]	G	T	4.743e^-4	1	UTR_5_PRIME skd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_sens mE1_TFBS_Trl
3L	10376274	3L_10376274_SNP [dm3] 3L_10383174_SNP [dm6]	G	A	4.743e^-4	1	INTERGENIC
3L	6395012	3L_6395012_SNP [dm3] 3L_6401912_SNP [dm6]	T	C	4.744e^-4	1	INTRON CG42747
2L	12278177	2L_12278177_SNP [dm3] 2L_12278177_SNP [dm6]	A	T	4.760e^-4	1	INTRON aret
3L	12128115	3L_12128115_SNP [dm3] 3L_12135015_SNP [dm6]	C	T	4.762e^-4	1	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad
2R	15381437	2R_15381437_SNP [dm3] 2R_19493932_SNP [dm6]	A	C	4.775e^-4	1	UTR_3_PRIME Rep DOWNSTREAM hpo
3L	4354621	3L_4354621_SNP [dm3] 3L_4354621_SNP [dm6]	T	C	4.792e^-4	1	INTRON Cip4
2L	10515826	2L_10515826_SNP [dm3] 2L_10515826_SNP [dm6]	G	A	4.802e^-4	1	INTRON Fatp & 1 other
3R	15568934	3R_15568934_SNP [dm3] 3R_19743212_SNP [dm6]	G	T	4.802e^-4	1	DOWNSTREAM CR43488 INTRON GluClalpha
3R	13573491	3R_13573491_SNP [dm3] 3R_17747769_SNP [dm6]	G	A	4.806e^-4	1	DOWNSTREAM TyrRII INTERGENIC
3L	11851264	3L_11851264_SNP [dm3] 3L_11858164_SNP [dm6]	C	T	4.807e^-4	1	INTRON CG44837
3R	25802116	3R_25802116_SNP [dm3] 3R_29976394_SNP [dm6]	A	C	4.827e^-4	1	INTERGENIC
3L	3327919	3L_3327919_SNP [dm3] 3L_3327919_SNP [dm6]	G	A	4.827e^-4	1	SYNONYMOUS_CODING PHGPx INTRON CG11526
3L	14160357	3L_14160357_SNP [dm3] 3L_14167257_SNP [dm6]	T	C	4.829e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	19010724	3R_19010724_SNP [dm3] 3R_23185002_SNP [dm6]	G	T	4.832e^-4	1	UTR_3_PRIME Irk1 DOWNSTREAM cnc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3754838	X_3754838_SNP [dm3] X_3860805_SNP [dm6]	T	A	4.832e^-4	1	EXON roX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5870274	X_5870274_SNP [dm3] X_5976241_SNP [dm6]	C	T	4.838e^-4	1	INTRON Grip
3L	10064673	3L_10064673_SNP [dm3] 3L_10071573_SNP [dm6]	C	G	4.839e^-4	1	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14334466	3L_14334466_SNP [dm3] 3L_14341366_SNP [dm6]	T	C	4.848e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	4003223	3L_4003223_SNP [dm3] 3L_4003223_SNP [dm6]	A	T	4.873e^-4	1	UPSTREAM CG14985 INTERGENIC
3R	16275291	3R_16275291_SNP [dm3] 3R_20449569_SNP [dm6]	G	A	4.881e^-4	1	UTR_5_PRIME Gfrl INTRON Gfrl
X	1417594	X_1417594_SNP [dm3] X_1523561_SNP [dm6]	G	C	4.882e^-4	1	UTR_3_PRIME Mur2B
X	14538744	X_14538744_SNP [dm3] X_14644711_SNP [dm6]	A	G	4.895e^-4	1	INTRON NetA
2R	11956567	2R_11956567_SNP [dm3] 2R_16069062_SNP [dm6]	C	T	4.897e^-4	1	INTERGENIC
2R	16168277	2R_16168277_SNP [dm3] 2R_20280772_SNP [dm6]	T	G	4.921e^-4	1	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
3R	19910238	3R_19910238_SNP [dm3] 3R_24084516_SNP [dm6]	A	G	4.928e^-4	1	INTRON 4EHP
2L	7341355	2L_7341355_DEL [dm3] 2L_7341355_DEL [dm6]	TT	T	4.939e^-4	1	INTRON Wnt6	TF binding site mE1_TFBS_sbb
3L	6149530	3L_6149530_SNP [dm3] 3L_6156430_SNP [dm6]	A	G	4.943e^-4	1	DOWNSTREAM CG13297 INTERGENIC
3L	12880560	3L_12880560_SNP [dm3] 3L_12887460_SNP [dm6]	G	A	4.943e^-4	1	SYNONYMOUS_CODING CG14120
3R	13733941	3R_13733941_SNP [dm3] 3R_17908219_SNP [dm6]	C	A	4.954e^-4	1	DOWNSTREAM CG12347 INTRON Rim
2L	542878	2L_542878_SNP [dm3] 2L_542878_SNP [dm6]	G	T	4.958e^-4	1	UTR_3_PRIME Spp UPSTREAM lwr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21183570	3R_21183570_SNP [dm3] 3R_25357848_SNP [dm6]	G	T	4.960e^-4	1	UPSTREAM CG11913 INTRON Fur1
2R	2688115	2R_2688115_SNP [dm3] 2R_6800610_SNP [dm6]	A	G	4.960e^-4	1	INTERGENIC
3R	18249548	3R_18249548_SNP [dm3] 3R_22423826_SNP [dm6]	A	T	4.963e^-4	1	DOWNSTREAM mats INTRON pinta
2R	19666938	2R_19666938_SNP [dm3] 2R_23779415_SNP [dm6]	G	T	4.965e^-4	1	INTRON CG9850
X	16811858	X_16811858_SNP [dm3] X_16917825_SNP [dm6]	T	A	4.969e^-4	1	INTRON CG4928
3L	10064544	3L_10064544_SNP [dm3] 3L_10071444_SNP [dm6]	G	A	4.970e^-4	1	INTRON dpr6
3R	25786343	3R_25786343_SNP [dm3] 3R_29960621_SNP [dm6]	A	C	4.972e^-4	1	INTRON TkR99D
2L	477871	2L_477871_SNP [dm3] 2L_477871_SNP [dm6]	T	C	4.974e^-4	1	NON_SYNONYMOUS_CODING cbt INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12903831	X_12903831_SNP [dm3] X_13009798_SNP [dm6]	G	A	4.989e^-4	1	INTRON rad
3R	23165564	3R_23165564_SNP [dm3] 3R_27339842_SNP [dm6]	G	A	4.996e^-4	1	UPSTREAM CG42534 INTERGENIC
2R	14439882	2R_14439882_SNP [dm3] 2R_18552377_SNP [dm6]	T	C	4.998e^-4	1	INTERGENIC
2L	11507411	2L_11507411_SNP [dm3] 2L_11507411_SNP [dm6]	A	C	5.003e^-4	1	DOWNSTREAM CG6509 INTRON spz4	TF binding site mE1_TFBS_cad
3R	21338166	3R_21338166_DEL [dm3] 3R_25512444_DEL [dm6]	AAAAGGCTTGACCACTGCAA...	A	5.024e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15725284	3R_15725284_SNP [dm3] 3R_19899562_SNP [dm6]	T	C	5.028e^-4	1	UTR_3_PRIME CG4538 DOWNSTREAM CG4733 INTRON CG4538	TF binding site mE1_TFBS_cad
3L	11372478	3L_11372478_SNP [dm3] 3L_11379378_SNP [dm6]	G	C	5.031e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13917592	3L_13917592_SNP [dm3] 3L_13924492_SNP [dm6]	T	A	5.039e^-4	1	INTRON Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	16521724	3R_16521724_SNP [dm3] 3R_20696002_SNP [dm6]	C	T	5.047e^-4	1	INTRON Oamb
3R	25016805	3R_25016805_SNP [dm3] 3R_29191083_SNP [dm6]	T	A	5.051e^-4	1	INTRON CG14509
2R	17110459	2R_17110459_SNP [dm3] 2R_21222954_SNP [dm6]	C	G	5.066e^-4	1	INTRON ASPP	TF binding site mE1_TFBS_cad
3R	25666936	3R_25666936_SNP [dm3] 3R_29841214_SNP [dm6]	A	C	5.093e^-4	1	UPSTREAM Cad99C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
X	18938636	X_18938636_SNP [dm3] X_19044603_SNP [dm6]	T	C	5.094e^-4	1	INTERGENIC
2L	10345624	2L_10345624_SNP [dm3] 2L_10345624_SNP [dm6]	G	T	5.105e^-4	1	INTRON CG5022
2L	6351806	2L_6351806_SNP [dm3] 2L_6351806_SNP [dm6]	T	G	5.107e^-4	1	UPSTREAM CG9498 DOWNSTREAM ppk7 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	16173118	3R_16173118_SNP [dm3] 3R_20347396_SNP [dm6]	C	A	5.108e^-4	1	INTERGENIC
2L	3962957	2L_3962957_SNP [dm3] 2L_3962957_SNP [dm6]	T	A	5.115e^-4	1	INTRON fred	TF binding site mE1_TFBS_bab1
3L	6395013	3L_6395013_SNP [dm3] 3L_6401913_SNP [dm6]	G	A	5.117e^-4	1	INTRON CG42747
3L	18244701	3L_18244701_SNP [dm3] 3L_18251601_SNP [dm6]	G	T	5.117e^-4	1	UPSTREAM CheA75a INTERGENIC
3L	12852843	3L_12852843_SNP [dm3] 3L_12859743_SNP [dm6]	G	T	5.118e^-4	1	NON_SYNONYMOUS_CODING CG32107
3L	8648347	3L_8648347_SNP [dm3] 3L_8655247_SNP [dm6]	A	C	5.130e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10528178	2L_10528178_SNP [dm3] 2L_10528178_SNP [dm6]	T	G	5.136e^-4	1	UPSTREAM Lip4 INTRON Lip4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6149532	3L_6149532_SNP [dm3] 3L_6156432_SNP [dm6]	A	C	5.139e^-4	1	DOWNSTREAM CG13297 INTERGENIC
X	4986903	X_4986903_SNP [dm3] X_5092870_SNP [dm6]	C	T	5.142e^-4	1	INTRON rg & 1 other
2L	21179802	2L_21179802_SNP [dm3] 2L_21179802_SNP [dm6]	T	A	5.143e^-4	1	UPSTREAM Mcm10 & 1 other DOWNSTREAM CR44911 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1583577	2L_1583577_SNP [dm3] 2L_1583577_SNP [dm6]	G	T	5.143e^-4	1	INTRON haf
2L	12662396	2L_12662396_SNP [dm3] 2L_12662396_SNP [dm6]	G	A	5.147e^-4	1	INTRON pdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14016633	3L_14016633_SNP [dm3] 3L_14023533_SNP [dm6]	A	T	5.151e^-4	1	INTRON ptip	TF binding site mE1_TFBS_chinmo
3L	2181193	3L_2181193_DEL [dm3] 3L_2181193_DEL [dm6]	TTTT	T	5.179e^-4	1	INTERGENIC
3L	2207438	3L_2207438_SNP [dm3] 3L_2207438_SNP [dm6]	A	T	5.184e^-4	1	INTERGENIC
X	8608284	X_8608284_SNP [dm3] X_8714251_SNP [dm6]	C	T	5.206e^-4	1	UPSTREAM CG1785 & 1 other INTRON CG2004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	19386638	3L_19386638_SNP [dm3] 3L_19393538_SNP [dm6]	A	C	5.215e^-4	1	INTRON CG32206
X	3012235	X_3012235_SNP [dm3] X_3118202_SNP [dm6]	A	T	5.221e^-4	1	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6110721	X_6110721_SNP [dm3] X_6216688_SNP [dm6]	T	G	5.222e^-4	1	DOWNSTREAM Btd INTERGENIC
3L	11851615	3L_11851615_SNP [dm3] 3L_11858515_SNP [dm6]	C	A	5.228e^-4	1	INTRON CG44837
X	9540149	X_9540149_SNP [dm3] X_9646116_SNP [dm6]	G	A	5.235e^-4	1	UPSTREAM l_1_G0232 INTRON l_1_G0232	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23062084	3R_23062084_SNP [dm3] 3R_27236362_SNP [dm6]	A	C	5.240e^-4	1	DOWNSTREAM CG31068 INTRON CG31064
X	3754850	X_3754850_SNP [dm3] X_3860817_SNP [dm6]	T	G	5.241e^-4	1	EXON roX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12013939	3L_12013939_SNP [dm3] 3L_12020839_SNP [dm6]	G	T	5.251e^-4	1	INTRON rols
3R	11689818	3R_11689818_SNP [dm3] 3R_15864096_SNP [dm6]	T	A	5.252e^-4	1	INTRON CG31183
3R	11689831	3R_11689831_INS [dm3] 3R_15864109_INS [dm6]	T	TGA	5.252e^-4	1	INTRON CG31183
3R	11689833	3R_11689833_SNP [dm3] 3R_15864111_SNP [dm6]	T	G	5.252e^-4	1	INTRON CG31183
3R	11689838	3R_11689838_SNP [dm3] 3R_15864116_SNP [dm6]	G	C	5.252e^-4	1	INTRON CG31183
3R	11689842	3R_11689842_INS [dm3] 3R_15864120_INS [dm6]	T	GGA	5.252e^-4	1	INTRON CG31183
3R	11689845	3R_11689845_MNP [dm3] 3R_15864123_MNP [dm6]	TGC	ACG	5.252e^-4	1	INTRON CG31183
3R	11689849	3R_11689849_SNP [dm3] 3R_15864127_SNP [dm6]	A	T	5.252e^-4	1	INTRON CG31183
3R	17829629	3R_17829629_SNP [dm3] 3R_22003907_SNP [dm6]	A	G	5.254e^-4	1	INTRON Eip93F	TF binding site mE1_TFBS_cad
3L	12128004	3L_12128004_SNP [dm3] 3L_12134904_SNP [dm6]	T	G	5.257e^-4	1	INTRON CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9896026	2R_9896026_SNP [dm3] 2R_14008521_SNP [dm6]	A	G	5.260e^-4	1	UPSTREAM mam INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2181875	3L_2181875_SNP [dm3] 3L_2181875_SNP [dm6]	C	T	5.268e^-4	1	INTERGENIC
3R	25787085	3R_25787085_SNP [dm3] 3R_29961363_SNP [dm6]	G	C	5.273e^-4	1	INTRON TkR99D
2R	2685166	2R_2685166_DEL [dm3] 2R_6797661_DEL [dm6]	GCTTGTGTGTG...	G	5.273e^-4	1	INTRON Epac
3L	6770540	3L_6770540_SNP [dm3] 3L_6777440_SNP [dm6]	T	C	5.302e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17334423	2L_17334423_SNP [dm3] 2L_17334423_SNP [dm6]	T	C	5.304e^-4	1	INTERGENIC
3L	1684613	3L_1684613_SNP [dm3] 3L_1684613_SNP [dm6]	C	T	5.305e^-4	1	INTRON CG7991
3L	5871366	3L_5871366_SNP [dm3] 3L_5878266_SNP [dm6]	G	A	5.305e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12236804	2L_12236804_INS [dm3] 2L_12236804_INS [dm6]	T	TAAAAT	5.316e^-4	1	INTRON aret	TF binding site mE1_TFBS_inv
2L	3580231	2L_3580231_SNP [dm3] 2L_3580231_SNP [dm6]	G	A	5.330e^-4	1	START_GAINED sob UTR_5_PRIME sob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	3754834	X_3754834_SNP [dm3] X_3860801_SNP [dm6]	A	T	5.330e^-4	1	EXON roX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5626609	2R_5626609_SNP [dm3] 2R_9739104_SNP [dm6]	G	A	5.336e^-4	1	INTRON sqa
3R	18245800	3R_18245800_SNP [dm3] 3R_22420078_SNP [dm6]	G	A	5.342e^-4	1	SYNONYMOUS_CODING Nop56	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4400727	2L_4400727_SNP [dm3] 2L_4400727_SNP [dm6]	T	G	5.358e^-4	1	UPSTREAM CG33003 DOWNSTREAM l_2_k05819 INTERGENIC	TF binding site mE1_TFBS_cad
3L	4932698	3L_4932698_SNP [dm3] 3L_4932698_SNP [dm6]	G	A	5.380e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	12374614	3L_12374614_SNP [dm3] 3L_12381514_SNP [dm6]	G	A	5.383e^-4	1	INTRON Ncc69	TF binding site mE1_TFBS_inv
X	4012383	X_4012383_SNP [dm3] X_4118350_SNP [dm6]	T	C	5.386e^-4	1	SPLICE_SITE_REGION tyf UPSTREAM Tip60 INTRON tyf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	12172979	2L_12172979_SNP [dm3] 2L_12172979_SNP [dm6]	A	G	5.396e^-4	1	UPSTREAM crok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19150419	2R_19150419_SNP [dm3] 2R_23262896_SNP [dm6]	G	T	5.399e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5021121	2L_5021121_SNP [dm3] 2L_5021121_SNP [dm6]	T	A	5.402e^-4	1	INTRON vkg
2R	1242980	2R_1242980_SNP [dm3] 2R_5355475_SNP [dm6]	C	T	5.404e^-4	1	DOWNSTREAM CG10396 INTERGENIC	transposable element FlyBase
3R	16315118	3R_16315118_SNP [dm3] 3R_20489396_SNP [dm6]	T	C	5.408e^-4	1	INTERGENIC
X	16040238	X_16040238_DEL [dm3] X_16146205_DEL [dm6]	GG	G	5.413e^-4	1	INTRON disco-r	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10980664	2R_10980664_SNP [dm3] 2R_15093159_SNP [dm6]	A	G	5.432e^-4	1	DOWNSTREAM CR44457 INTERGENIC
2L	12205285	2L_12205285_SNP [dm3] 2L_12205285_SNP [dm6]	T	G	5.434e^-4	1	UPSTREAM aret INTRON aret
2R	1561666	2R_1561666_DEL [dm3] 2R_5674161_DEL [dm6]	GA	C	5.449e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb
3R	14954238	3R_14954238_SNP [dm3] 3R_19128516_SNP [dm6]	T	A	5.449e^-4	1	INTRON CG6040
X	17388155	X_17388155_SNP [dm3] X_17494122_SNP [dm6]	A	G	5.451e^-4	1	INTRON CG43658
3L	397347	3L_397347_SNP [dm3] 3L_397347_SNP [dm6]	G	T	5.464e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12205341	2L_12205341_SNP [dm3] 2L_12205341_SNP [dm6]	C	T	5.464e^-4	1	UPSTREAM aret INTRON aret
3L	6368506	3L_6368506_SNP [dm3] 3L_6375406_SNP [dm6]	G	T	5.467e^-4	1	INTERGENIC
3R	667672	3R_667672_SNP [dm3] 3R_4841950_SNP [dm6]	A	T	5.476e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	10321655	3L_10321655_SNP [dm3] 3L_10328555_SNP [dm6]	T	C	5.504e^-4	1	INTERGENIC
X	4768483	X_4768483_SNP [dm3] X_4874450_SNP [dm6]	T	A	5.504e^-4	1	UPSTREAM CR43495 INTRON CG42594
3R	25785610	3R_25785610_SNP [dm3] 3R_29959888_SNP [dm6]	T	A	5.512e^-4	1	INTRON TkR99D
3R	19914317	3R_19914317_SNP [dm3] 3R_24088595_SNP [dm6]	T	C	5.528e^-4	1	INTRON 4EHP
X	17523238	X_17523238_SNP [dm3] X_17629205_SNP [dm6]	A	G	5.538e^-4	1	SYNONYMOUS_CODING CG8326 DOWNSTREAM CG8316	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14040920	3L_14040920_SNP [dm3] 3L_14047820_SNP [dm6]	C	A	5.543e^-4	1	INTRON blue	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8523105	2L_8523105_SNP [dm3] 2L_8523105_SNP [dm6]	G	C	5.544e^-4	1	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8523133	2L_8523133_SNP [dm3] 2L_8523133_SNP [dm6]	G	A	5.544e^-4	1	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
4	765308	4_765308_SNP [dm3] 4_744682_SNP [dm6]	T	G	5.549e^-4	1	INTRON bt
3R	1854764	3R_1854764_SNP [dm3] 3R_6029042_SNP [dm6]	A	T	5.574e^-4	1	DOWNSTREAM CR1075 INTERGENIC
3R	25665773	3R_25665773_INS [dm3] 3R_29840051_INS [dm6]	C	CAGC	5.582e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1239806	3L_1239806_INS [dm3] 3L_1239806_INS [dm6]	T	TGTAT	5.593e^-4	1	INTRON CG9194	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	13130014	3R_13130014_SNP [dm3] 3R_17304292_SNP [dm6]	A	G	5.604e^-4	1	INTERGENIC
2L	8142545	2L_8142545_SNP [dm3] 2L_8142545_SNP [dm6]	C	A	5.605e^-4	1	UPSTREAM mir-4984 DOWNSTREAM CG42762 INTRON CG8552
3R	6249228	3R_6249228_SNP [dm3] 3R_10423506_SNP [dm6]	T	A	5.607e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	2611478	3R_2611478_SNP [dm3] 3R_6785756_SNP [dm6]	A	C	5.616e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_inv
3R	1806427	3R_1806427_SNP [dm3] 3R_5980705_SNP [dm6]	A	T	5.624e^-4	1	INTERGENIC
X	10381143	X_10381143_SNP [dm3] X_10487110_SNP [dm6]	G	A	5.626e^-4	1	UTR_5_PRIME CG32687 UPSTREAM CG32687
2R	611196	2R_611196_SNP [dm3] 2R_4723691_SNP [dm6]	G	A	5.631e^-4	1	INTRON Nipped-B	transposable element FlyBase
3L	18689778	3L_18689778_SNP [dm3] 3L_18696678_SNP [dm6]	C	T	5.633e^-4	1	UTR_3_PRIME Dic4 DOWNSTREAM Dic4
2L	7023977	2L_7023977_SNP [dm3] 2L_7023977_SNP [dm6]	C	A	5.639e^-4	1	UPSTREAM ade3 DOWNSTREAM CG31908 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11151670	3L_11151670_SNP [dm3] 3L_11158570_SNP [dm6]	T	A	5.647e^-4	1	SPLICE_SITE_REGION CG32082 INTRON CG32082	TF binding site mE1_TFBS_inv
X	3760190	X_3760190_SNP [dm3] X_3866157_SNP [dm6]	A	T	5.648e^-4	1	INTRON yin
2R	13272057	2R_13272057_SNP [dm3] 2R_17384552_SNP [dm6]	A	G	5.649e^-4	1	INTERGENIC
X	10110545	X_10110545_SNP [dm3] X_10216512_SNP [dm6]	G	A	5.651e^-4	1	UTR_3_PRIME l_1_G0230 INTRON CG2962
3R	12936837	3R_12936837_SNP [dm3] 3R_17111115_SNP [dm6]	G	A	5.656e^-4	1	INTRON cher	TF binding site mE1_TFBS_cad
3R	16315078	3R_16315078_SNP [dm3] 3R_20489356_SNP [dm6]	G	A	5.676e^-4	1	INTERGENIC
X	17148167	X_17148167_SNP [dm3] X_17254134_SNP [dm6]	T	C	5.678e^-4	1	INTRON f
3R	12003310	3R_12003310_SNP [dm3] 3R_16177588_SNP [dm6]	C	G	5.684e^-4	1	NON_SYNONYMOUS_CODING CG8925
X	3748380	X_3748380_SNP [dm3] X_3854347_SNP [dm6]	C	G	5.698e^-4	1	SYNONYMOUS_CODING ec	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5625951	2R_5625951_SNP [dm3] 2R_9738446_SNP [dm6]	C	T	5.702e^-4	1	INTRON sqa
X	6323085	X_6323085_SNP [dm3] X_6429052_SNP [dm6]	C	G	5.708e^-4	1	INTRON CG42340
3R	1838424	3R_1838424_DEL [dm3] 3R_6012702_DEL [dm6]	ATACAAACATATACATCAAA...	A	5.712e^-4	1	UPSTREAM CG10280 INTERGENIC
3R	20534128	3R_20534128_SNP [dm3] 3R_24708406_SNP [dm6]	C	T	5.713e^-4	1	UTR_3_PRIME slo DOWNSTREAM slo
X	17585421	X_17585421_SNP [dm3] X_17691388_SNP [dm6]	C	G	5.720e^-4	1	INTRON chas
2R	5392162	2R_5392162_SNP [dm3] 2R_9504657_SNP [dm6]	C	T	5.724e^-4	1	INTRON brp
2R	8875602	2R_8875602_SNP [dm3] 2R_12988097_SNP [dm6]	G	A	5.725e^-4	1	INTERGENIC
X	5184760	X_5184760_SNP [dm3] X_5290727_SNP [dm6]	T	G	5.726e^-4	1	INTERGENIC
3L	18287433	3L_18287433_SNP [dm3] 3L_18294333_SNP [dm6]	T	C	5.727e^-4	1	UPSTREAM CR43306 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	11951946	X_11951946_SNP [dm3] X_12057913_SNP [dm6]	G	C	5.743e^-4	1	INTRON CR43960 & 1 other	TF binding site mE1_TFBS_chinmo
3L	7557120	3L_7557120_SNP [dm3] 3L_7564020_SNP [dm6]	T	C	5.744e^-4	1	INTRON frac	TF binding site BDTNP1_TFBS_twi
2L	4814269	2L_4814269_DEL [dm3] 2L_4814269_DEL [dm6]	ACAA	A	5.745e^-4	1	INTRON CG15629
3L	10388202	3L_10388202_SNP [dm3] 3L_10395102_SNP [dm6]	G	T	5.746e^-4	1	INTERGENIC
2L	16470343	2L_16470343_DEL [dm3] 2L_16470343_DEL [dm6]	GG	G	5.754e^-4	1	INTRON dac	regulatory region REDfly_CRMs
2R	9422057	2R_9422057_SNP [dm3] 2R_13534552_SNP [dm6]	T	A	5.754e^-4	1	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	6840630	3L_6840630_INS [dm3] 3L_6847530_INS [dm6]	T	TGT	5.758e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	18017623	2L_18017623_SNP [dm3] 2L_18017623_SNP [dm6]	C	A	5.769e^-4	1	INTRON rdo
3R	21183564	3R_21183564_DEL [dm3] 3R_25357842_DEL [dm6]	TGGAA	T	5.776e^-4	1	UPSTREAM CG11913 INTRON Fur1
3R	12907930	3R_12907930_SNP [dm3] 3R_17082208_SNP [dm6]	G	T	5.781e^-4	1	UPSTREAM kuk INTRON kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	4819230	2L_4819230_SNP [dm3] 2L_4819230_SNP [dm6]	C	A	5.791e^-4	1	UPSTREAM CG3225 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14016657	3L_14016657_SNP [dm3] 3L_14023557_SNP [dm6]	G	A	5.807e^-4	1	INTRON ptip	TF binding site mE1_TFBS_chinmo
3L	16871870	3L_16871870_SNP [dm3] 3L_16878770_SNP [dm6]	A	G	5.808e^-4	1	NON_SYNONYMOUS_CODING CG32170 INTRON Lmpt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1497334	2R_1497334_SNP [dm3] 2R_5609829_SNP [dm6]	T	A	5.813e^-4	1	UTR_3_PRIME CG17508 INTRON CG17508
2L	14164538	2L_14164538_SNP [dm3] 2L_14164538_SNP [dm6]	G	T	5.815e^-4	1	INTRON CG43333
2L	8652799	2L_8652799_SNP [dm3] 2L_8652799_SNP [dm6]	G	A	5.824e^-4	1	INTRON Sema-1a
2L	13623229	2L_13623229_SNP [dm3] 2L_13623229_SNP [dm6]	G	T	5.832e^-4	1	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3969204	2L_3969204_SNP [dm3] 2L_3969204_SNP [dm6]	A	T	5.835e^-4	1	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	22996947	3R_22996947_SNP [dm3] 3R_27171225_SNP [dm6]	G	A	5.835e^-4	1	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
X	9284037	X_9284037_SNP [dm3] X_9390004_SNP [dm6]	G	A	5.843e^-4	1	INTRON mgl
X	9284052	X_9284052_SNP [dm3] X_9390019_SNP [dm6]	C	T	5.843e^-4	1	INTRON mgl
3R	11048760	3R_11048760_SNP [dm3] 3R_15223038_SNP [dm6]	G	T	5.859e^-4	1	DOWNSTREAM CG12241 & 1 other INTRON Rpb7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	9845289	2R_9845289_SNP [dm3] 2R_13957784_SNP [dm6]	C	T	5.861e^-4	1	DOWNSTREAM Rpn13 INTRON AGO1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
2L	16479490	2L_16479490_SNP [dm3] 2L_16479490_SNP [dm6]	T	C	5.865e^-4	1	INTRON dac
3R	23884709	3R_23884709_SNP [dm3] 3R_28058987_SNP [dm6]	G	A	5.866e^-4	1	INTRON CG34362
3R	4787927	3R_4787927_SNP [dm3] 3R_8962205_SNP [dm6]	A	T	5.870e^-4	1	INTRON CG11966	TF binding site BDTNP1_TFBS_dl
3L	18617893	3L_18617893_SNP [dm3] 3L_18624793_SNP [dm6]	C	T	5.872e^-4	1	DOWNSTREAM bora INTERGENIC
2R	7342643	2R_7342643_SNP [dm3] 2R_11455138_SNP [dm6]	C	T	5.879e^-4	1	SYNONYMOUS_CODING E_Pc_	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11869884	3R_11869884_SNP [dm3] 3R_16044162_SNP [dm6]	G	A	5.880e^-4	1	SYNONYMOUS_CODING CG10264 DOWNSTREAM CG10407
3L	2592523	3L_2592523_SNP [dm3] 3L_2592523_SNP [dm6]	C	A	5.886e^-4	1	INTRON dos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	2592540	3L_2592540_SNP [dm3] 3L_2592540_SNP [dm6]	T	G	5.886e^-4	1	INTRON dos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	2593709	3L_2593709_SNP [dm3] 3L_2593709_SNP [dm6]	G	T	5.886e^-4	1	SYNONYMOUS_CODING dos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8704205	3R_8704205_SNP [dm3] 3R_12878483_SNP [dm6]	T	C	5.892e^-4	1	INTERGENIC
3R	21228210	3R_21228210_SNP [dm3] 3R_25402488_SNP [dm6]	C	T	5.900e^-4	1	INTRON Fur1
2R	611197	2R_611197_SNP [dm3] 2R_4723692_SNP [dm6]	T	C	5.920e^-4	1	INTRON Nipped-B	transposable element FlyBase
2L	11494079	2L_11494079_SNP [dm3] 2L_11494079_SNP [dm6]	G	C	5.922e^-4	1	INTERGENIC
2R	5611653	2R_5611653_SNP [dm3] 2R_9724148_SNP [dm6]	G	C	5.926e^-4	1	INTRON sqa
3L	19527880	3L_19527880_SNP [dm3] 3L_19534780_SNP [dm6]	C	T	5.936e^-4	1	NON_SYNONYMOUS_CODING Cpr76Bd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18656753	2R_18656753_SNP [dm3] 2R_22769248_SNP [dm6]	A	G	5.936e^-4	1	INTRON CG42260
2R	14918517	2R_14918517_SNP [dm3] 2R_19031012_SNP [dm6]	G	A	5.943e^-4	1	DOWNSTREAM CG43351 INTRON 5-HT1B
3R	1713448	3R_1713448_INS [dm3] 3R_5887726_INS [dm6]	A	ATACA	5.943e^-4	1	INTRON CG34113
3R	3902807	3R_3902807_SNP [dm3] 3R_8077085_SNP [dm6]	G	T	5.953e^-4	1	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10387710	3R_10387710_SNP [dm3] 3R_14561988_SNP [dm6]	T	C	5.953e^-4	1	UPSTREAM CG14851 DOWNSTREAM CG14850 INTERGENIC
3L	21000000	3L_21000000_SNP [dm3] 3L_21006900_SNP [dm6]	A	G	5.956e^-4	1	UPSTREAM scaRNA:PsiU6-40 INTRON skd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2R	5627400	2R_5627400_SNP [dm3] 2R_9739895_SNP [dm6]	T	G	5.957e^-4	1	INTRON sqa	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10187618	3R_10187618_SNP [dm3] 3R_14361896_SNP [dm6]	T	C	5.965e^-4	1	UPSTREAM CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20450121	3R_20450121_SNP [dm3] 3R_24624399_SNP [dm6]	A	T	5.968e^-4	1	DOWNSTREAM mld INTRON Syx18
3L	2159583	3L_2159583_SNP [dm3] 3L_2159583_SNP [dm6]	A	G	5.971e^-4	1	INTRON CG15822	TF binding site mE1_TFBS_inv
3R	21265064	3R_21265064_SNP [dm3] 3R_25439342_SNP [dm6]	A	G	5.971e^-4	1	INTRON Fur1
2L	8452388	2L_8452388_SNP [dm3] 2L_8452388_SNP [dm6]	G	T	5.972e^-4	1	UPSTREAM fu12 INTRON fu12
3R	17612321	3R_17612321_SNP [dm3] 3R_21786599_SNP [dm6]	G	A	5.974e^-4	1	SYNONYMOUS_CODING CASK UTR_3_PRIME CASK UPSTREAM CRG
3R	4855927	3R_4855927_SNP [dm3] 3R_9030205_SNP [dm6]	A	G	5.977e^-4	1	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25887383	3R_25887383_DEL [dm3] 3R_30061661_DEL [dm6]	TT	A	5.978e^-4	1	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1258141	3L_1258141_SNP [dm3] 3L_1258141_SNP [dm6]	C	A	5.979e^-4	1	INTRON CG9134
3L	6574409	3L_6574409_SNP [dm3] 3L_6581309_SNP [dm6]	C	T	5.982e^-4	1	INTRON CG18769 & 1 other
2L	10515411	2L_10515411_DEL [dm3] 2L_10515411_DEL [dm6]	AGCCGTCTTCAAAATACATA...	A	5.989e^-4	1	INTRON Fatp & 1 other
2R	16168228	2R_16168228_SNP [dm3] 2R_20280723_SNP [dm6]	A	T	5.991e^-4	1	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2R	18532151	2R_18532151_SNP [dm3] 2R_22644646_SNP [dm6]	A	T	5.997e^-4	1	UTR_3_PRIME CG2852 UPSTREAM Ugt58Fa DOWNSTREAM CG2852	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5727861	2L_5727861_SNP [dm3] 2L_5727861_SNP [dm6]	G	A	6.006e^-4	1	NON_SYNONYMOUS_CODING CG14006 INTRON CG11030	TF binding site mE1_TFBS_cad
3R	22271116	3R_22271116_SNP [dm3] 3R_26445394_SNP [dm6]	G	A	6.011e^-4	1	INTRON tx
X	5869572	X_5869572_SNP [dm3] X_5975539_SNP [dm6]	G	A	6.020e^-4	1	INTRON Grip
3R	7740064	3R_7740064_SNP [dm3] 3R_11914342_SNP [dm6]	C	A	6.062e^-4	1	INTRON Cad87A
3R	6009461	3R_6009461_DEL [dm3] 3R_10183739_DEL [dm6]	GG	G	6.091e^-4	1	INTRON CG12814
3L	9127753	3L_9127753_SNP [dm3] 3L_9134653_SNP [dm6]	C	T	6.098e^-4	1	UTR_5_PRIME Dhpr UPSTREAM Dhpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11808117	3L_11808117_SNP [dm3] 3L_11815017_SNP [dm6]	G	T	6.098e^-4	1	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8052463	2L_8052463_SNP [dm3] 2L_8052463_SNP [dm6]	A	G	6.101e^-4	1	SYNONYMOUS_CODING CG7466
2R	18362231	2R_18362231_SNP [dm3] 2R_22474726_SNP [dm6]	A	C	6.101e^-4	1	SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_chinmo
2R	15307325	2R_15307325_SNP [dm3] 2R_19419820_SNP [dm6]	A	G	6.105e^-4	1	INTRON hts	TF binding site mE1_TFBS_Trl
3L	10377570	3L_10377570_SNP [dm3] 3L_10384470_SNP [dm6]	G	A	6.116e^-4	1	INTERGENIC
2R	7349442	2R_7349442_SNP [dm3] 2R_11461937_SNP [dm6]	A	C	6.120e^-4	1	UTR_3_PRIME E_Pc_	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1258823	3L_1258823_SNP [dm3] 3L_1258823_SNP [dm6]	T	C	6.120e^-4	1	INTRON CG9134
2L	18063514	2L_18063514_SNP [dm3] 2L_18063514_SNP [dm6]	G	A	6.121e^-4	1	INTRON rdo
3R	18444361	3R_18444361_SNP [dm3] 3R_22618639_SNP [dm6]	C	T	6.125e^-4	1	DOWNSTREAM CG31161 INTRON mRpL45	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20012844	X_20012844_DEL [dm3] X_20118811_DEL [dm6]	CAAGGC	C	6.161e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20012851	X_20012851_INS [dm3] X_20118818_INS [dm6]	T	TCGAT	6.161e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18841548	3L_18841548_SNP [dm3] 3L_18848448_SNP [dm6]	A	T	6.161e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	14017904	3L_14017904_SNP [dm3] 3L_14024804_SNP [dm6]	C	T	6.165e^-4	1	SYNONYMOUS_CODING ptip
3L	14378092	3L_14378092_SNP [dm3] 3L_14384992_SNP [dm6]	C	G	6.170e^-4	1	INTERGENIC
2R	1561669	2R_1561669_SNP [dm3] 2R_5674164_SNP [dm6]	A	G	6.170e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb
X	4768412	X_4768412_SNP [dm3] X_4874379_SNP [dm6]	T	C	6.177e^-4	1	INTRON CG42594 EXON CR43495
3L	10826436	3L_10826436_SNP [dm3] 3L_10833336_SNP [dm6]	C	T	6.179e^-4	1	INTERGENIC
X	11903992	X_11903992_SNP [dm3] X_12009959_SNP [dm6]	A	C	6.183e^-4	1	DOWNSTREAM CG1492 & 1 other INTERGENIC
2R	13272063	2R_13272063_SNP [dm3] 2R_17384558_SNP [dm6]	G	T	6.190e^-4	1	INTERGENIC
3L	5346055	3L_5346055_SNP [dm3] 3L_5352955_SNP [dm6]	C	A	6.191e^-4	1	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	17720638	2R_17720638_INS [dm3] 2R_21833133_INS [dm6]	T	TGCC	6.193e^-4	1	INTRON CG34040	TF binding site mE1_TFBS_sens
3R	26377079	3R_26377079_SNP [dm3] 3R_30551357_SNP [dm6]	C	T	6.202e^-4	1	INTRON tmod
3R	18252497	3R_18252497_SNP [dm3] 3R_22426775_SNP [dm6]	A	T	6.207e^-4	1	INTRON CG13847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17927883	X_17927883_SNP [dm3] X_18033850_SNP [dm6]	G	A	6.207e^-4	1	INTRON Sh
X	15421596	X_15421596_SNP [dm3] X_15527563_SNP [dm6]	C	T	6.208e^-4	1	INTRON Ac13E
3L	11128411	3L_11128411_SNP [dm3] 3L_11135311_SNP [dm6]	A	C	6.245e^-4	1	SYNONYMOUS_CODING CG14143 UPSTREAM CG32082 DOWNSTREAM CG42575
2L	2790411	2L_2790411_SNP [dm3] 2L_2790411_SNP [dm6]	G	A	6.257e^-4	1	INTRON Syt1
2L	12668003	2L_12668003_SNP [dm3] 2L_12668003_SNP [dm6]	G	A	6.259e^-4	1	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3761039	X_3761039_SNP [dm3] X_3867006_SNP [dm6]	T	C	6.263e^-4	1	UPSTREAM yin INTRON yin	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3447849	2L_3447849_SNP [dm3] 2L_3447849_SNP [dm6]	C	T	6.269e^-4	1	DOWNSTREAM CG2772 INTERGENIC
2L	5366358	2L_5366358_SNP [dm3] 2L_5366358_SNP [dm6]	T	C	6.270e^-4	1	DOWNSTREAM nompC INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9203443	2R_9203443_SNP [dm3] 2R_13315938_SNP [dm6]	A	C	6.284e^-4	1	INTERGENIC
3L	2592679	3L_2592679_SNP [dm3] 3L_2592679_SNP [dm6]	G	C	6.287e^-4	1	NON_SYNONYMOUS_CODING dos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	7342532	2R_7342532_SNP [dm3] 2R_11455027_SNP [dm6]	C	T	6.287e^-4	1	SYNONYMOUS_CODING E_Pc_	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	12088885	X_12088885_SNP [dm3] X_12194852_SNP [dm6]	T	C	6.287e^-4	1	INTRON Ten-a
3L	18565823	3L_18565823_SNP [dm3] 3L_18572723_SNP [dm6]	T	C	6.292e^-4	1	INTRON AstC-R1
3L	5871364	3L_5871364_SNP [dm3] 3L_5878264_SNP [dm6]	T	A	6.294e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14523152	3L_14523152_SNP [dm3] 3L_14530052_SNP [dm6]	C	T	6.294e^-4	1	INTRON bbg
3L	11851676	3L_11851676_SNP [dm3] 3L_11858576_SNP [dm6]	C	T	6.294e^-4	1	INTRON CG44837
3L	2852142	3L_2852142_SNP [dm3] 3L_2852142_SNP [dm6]	G	A	6.300e^-4	1	INTRON CG43444	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	2089749	2L_2089749_SNP [dm3] 2L_2089749_SNP [dm6]	A	G	6.303e^-4	1	INTRON dpr3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	491033	2L_491033_SNP [dm3] 2L_491033_SNP [dm6]	C	T	6.308e^-4	1	UTR_5_PRIME ush INTRON ush	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	18017651	2L_18017651_SNP [dm3] 2L_18017651_SNP [dm6]	T	C	6.320e^-4	1	INTRON rdo
2L	6423898	2L_6423898_SNP [dm3] 2L_6423898_SNP [dm6]	G	T	6.326e^-4	1	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8941915	2R_8941915_SNP [dm3] 2R_13054410_SNP [dm6]	A	G	6.336e^-4	1	DOWNSTREAM Drl-2 INTERGENIC
X	4009763	X_4009763_SNP [dm3] X_4115730_SNP [dm6]	T	G	6.336e^-4	1	SYNONYMOUS_CODING Tip60 DOWNSTREAM dgt4	TF binding site mE1_TFBS_sens
2R	15584778	2R_15584778_SNP [dm3] 2R_19697273_SNP [dm6]	T	C	6.337e^-4	1	UPSTREAM Obp56a DOWNSTREAM CR44506 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	18989533	3R_18989533_SNP [dm3] 3R_23163811_SNP [dm6]	C	A	6.339e^-4	1	INTERGENIC
3R	4667815	3R_4667815_SNP [dm3] 3R_8842093_SNP [dm6]	C	A	6.344e^-4	1	INTRON pyd	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16928421	3L_16928421_SNP [dm3] 3L_16935321_SNP [dm6]	G	A	6.347e^-4	1	UTR_5_PRIME CG11905 INTRON CG11905	TF binding site mE1_TFBS_Trl
2L	9154814	2L_9154814_SNP [dm3] 2L_9154814_SNP [dm6]	C	G	6.363e^-4	1	INTRON CG32982
3L	1684435	3L_1684435_INS [dm3] 3L_1684435_INS [dm6]	C	CTTGGTTTTTGGC...	6.375e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_chinmo
X	4808521	X_4808521_SNP [dm3] X_4914488_SNP [dm6]	T	C	6.379e^-4	1	UTR_3_PRIME CG32772 DOWNSTREAM CG4041
2L	3967212	2L_3967212_SNP [dm3] 2L_3967212_SNP [dm6]	A	G	6.381e^-4	1	INTRON fred
3R	17535050	3R_17535050_SNP [dm3] 3R_21709328_SNP [dm6]	G	C	6.391e^-4	1	INTRON CG31176
3L	13008748	3L_13008748_SNP [dm3] 3L_13015648_SNP [dm6]	G	A	6.391e^-4	1	UPSTREAM CG11267 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3R	21988167	3R_21988167_DEL [dm3] 3R_26162445_DEL [dm6]	AA	A	6.391e^-4	1	INTERGENIC
2R	15593360	2R_15593360_SNP [dm3] 2R_19705855_SNP [dm6]	C	T	6.392e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	3176107	2L_3176107_SNP [dm3] 2L_3176107_SNP [dm6]	G	T	6.401e^-4	1	INTRON CG34393
2R	8512261	2R_8512261_SNP [dm3] 2R_12624756_SNP [dm6]	T	C	6.407e^-4	1	SPLICE_SITE_REGION CG30054 SYNONYMOUS_CODING CG30054
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	6.410e^-4	1	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10515745	2L_10515745_SNP [dm3] 2L_10515745_SNP [dm6]	A	G	6.415e^-4	1	INTRON Fatp & 1 other
3L	15119115	3L_15119115_SNP [dm3] 3L_15126015_SNP [dm6]	A	T	6.419e^-4	1	UPSTREAM CG16959 INTRON Cep135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	8071369	3L_8071369_SNP [dm3] 3L_8078269_SNP [dm6]	T	A	6.422e^-4	1	INTRON Ect4	TF binding site mE1_TFBS_Kr
2L	3640710	2L_3640710_SNP [dm3] 2L_3640710_SNP [dm6]	C	G	6.423e^-4	1	INTRON for
2L	18017739	2L_18017739_SNP [dm3] 2L_18017739_SNP [dm6]	A	G	6.440e^-4	1	INTRON rdo
3R	13906841	3R_13906841_SNP [dm3] 3R_18081119_SNP [dm6]	C	T	6.459e^-4	1	UTR_5_PRIME CG14317	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18644695	3L_18644695_SNP [dm3] 3L_18651595_SNP [dm6]	C	T	6.460e^-4	1	INTRON MYPT-75D
2R	18657431	2R_18657431_SNP [dm3] 2R_22769926_SNP [dm6]	G	C	6.468e^-4	1	INTRON CG42260
3R	10700431	3R_10700431_SNP [dm3] 3R_14874709_SNP [dm6]	T	C	6.476e^-4	1	INTRON btsz
2L	984901	2L_984901_SNP [dm3] 2L_984901_SNP [dm6]	C	G	6.486e^-4	1	INTERGENIC
2R	608678	2R_608678_SNP [dm3] 2R_4721173_SNP [dm6]	C	T	6.487e^-4	1	INTRON Nipped-B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5266323	3L_5266323_SNP [dm3] 3L_5273223_SNP [dm6]	T	A	6.487e^-4	1	UTR_5_PRIME shep INTRON shep
3L	16996575	3L_16996575_SNP [dm3] 3L_17003475_SNP [dm6]	C	A	6.517e^-4	1	INTRON CG3764
3L	11807894	3L_11807894_DEL [dm3] 3L_11814794_DEL [dm6]	TATAATATT	T	6.519e^-4	1	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14016666	3L_14016666_SNP [dm3] 3L_14023566_SNP [dm6]	G	A	6.520e^-4	1	INTRON ptip	TF binding site mE1_TFBS_chinmo
3R	24062640	3R_24062640_SNP [dm3] 3R_28236918_SNP [dm6]	T	C	6.522e^-4	1	DOWNSTREAM CR45041 INTRON CG34354
X	4807374	X_4807374_SNP [dm3] X_4913341_SNP [dm6]	C	T	6.524e^-4	1	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20999316	3L_20999316_SNP [dm3] 3L_21006216_SNP [dm6]	G	A	6.531e^-4	1	DOWNSTREAM scaRNA:PsiU6-40 INTRON skd	TF binding site mE1_TFBS_chinmo
3L	21020634	3L_21020634_SNP [dm3] 3L_21027534_SNP [dm6]	G	A	6.531e^-4	1	UPSTREAM CG10585 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21183560	3R_21183560_SNP [dm3] 3R_25357838_SNP [dm6]	G	T	6.532e^-4	1	UPSTREAM CG11913 INTRON Fur1
3R	3188479	3R_3188479_SNP [dm3] 3R_7362757_SNP [dm6]	T	A	6.537e^-4	1	UPSTREAM CG17944 DOWNSTREAM Mst84Dd INTERGENIC
3R	14945245	3R_14945245_SNP [dm3] 3R_19119523_SNP [dm6]	T	C	6.552e^-4	1	INTRON CG6040
X	5869574	X_5869574_SNP [dm3] X_5975541_SNP [dm6]	A	T	6.554e^-4	1	INTRON Grip
2L	12713788	2L_12713788_SNP [dm3] 2L_12713788_SNP [dm6]	G	A	6.555e^-4	1	SYNONYMOUS_CODING CG5792 UPSTREAM CG5787 DOWNSTREAM CG5792
2L	10133277	2L_10133277_SNP [dm3] 2L_10133277_SNP [dm6]	A	T	6.560e^-4	1	INTRON CG44153

By genomic position
Variant impact
Gene name

Cuticul_2_Me_C25 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results