DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.320e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.0004989

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.289	0.071
In_3R_K	16.5889	0.0002

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2096 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	7.598e^-7	0.581	SYNONYMOUS_CODING msps
3L	5706169	3L_5706169_SNP [dm3] 3L_5713069_SNP [dm6]	C	A	1.028e^-6	0.581	UPSTREAM CG44521 INTRON sif
2L	12592688	2L_12592688_SNP [dm3] 2L_12592688_SNP [dm6]	C	G	1.252e^-6	0.581	INTRON nub
3L	1590943	3L_1590943_SNP [dm3] 3L_1590943_SNP [dm6]	T	C	2.410e^-6	0.581	INTRON CG13917
2L	11197137	2L_11197137_SNP [dm3] 2L_11197137_SNP [dm6]	T	C	2.413e^-6	0.581	INTRON Ca-beta
3R	7139117	3R_7139117_SNP [dm3] 3R_11313395_SNP [dm6]	T	C	2.528e^-6	0.581	INTERGENIC
X	6137389	X_6137389_SNP [dm3] X_6243356_SNP [dm6]	G	A	2.604e^-6	0.581	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8138043	3R_8138043_SNP [dm3] 3R_12312321_SNP [dm6]	C	T	3.602e^-6	0.581	SYNONYMOUS_CODING CG4066	TF binding site mE1_TFBS_sens
3R	7026916	3R_7026916_SNP [dm3] 3R_11201194_SNP [dm6]	G	C	3.720e^-6	0.581	INTRON cu
3L	7568737	3L_7568737_SNP [dm3] 3L_7575637_SNP [dm6]	A	G	3.903e^-6	0.581	INTERGENIC
X	6137319	X_6137319_SNP [dm3] X_6243286_SNP [dm6]	T	G	3.934e^-6	0.581	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6136089	X_6136089_SNP [dm3] X_6242056_SNP [dm6]	G	A	4.087e^-6	0.581	INTRON Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12592690	2L_12592690_SNP [dm3] 2L_12592690_SNP [dm6]	A	G	4.809e^-6	0.581	INTRON nub
3R	7126770	3R_7126770_SNP [dm3] 3R_11301048_SNP [dm6]	T	C	4.834e^-6	0.581	INTRON CR31386	TF binding site mE1_TFBS_chinmo
3R	25398623	3R_25398623_SNP [dm3] 3R_29572901_SNP [dm6]	G	A	5.418e^-6	0.581	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	5.428e^-6	0.581	INTRON Octbeta3R
3R	9678205	3R_9678205_SNP [dm3] 3R_13852483_SNP [dm6]	A	T	5.480e^-6	0.581	INTERGENIC
X	6137320	X_6137320_SNP [dm3] X_6243287_SNP [dm6]	T	G	5.789e^-6	0.581	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11819272	2L_11819272_SNP [dm3] 2L_11819272_SNP [dm6]	A	T	6.514e^-6	0.581	INTRON Pde1c
2L	11819269	2L_11819269_SNP [dm3] 2L_11819269_SNP [dm6]	T	C	6.518e^-6	0.581	INTRON Pde1c
3R	10119687	3R_10119687_DEL [dm3] 3R_14293965_DEL [dm6]	TTT	T	6.988e^-6	0.581	INTRON CG12207
2L	11819255	2L_11819255_SNP [dm3] 2L_11819255_SNP [dm6]	A	G	7.018e^-6	0.581	INTRON Pde1c
3R	7138391	3R_7138391_SNP [dm3] 3R_11312669_SNP [dm6]	A	G	7.120e^-6	0.581	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14426096	2L_14426096_SNP [dm3] 2L_14426096_SNP [dm6]	G	A	7.495e^-6	0.586	UPSTREAM Cpr35B INTERGENIC
3R	24698056	3R_24698056_SNP [dm3] 3R_28872334_SNP [dm6]	G	A	7.998e^-6	0.6	UPSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11885437	3R_11885437_SNP [dm3] 3R_16059715_SNP [dm6]	C	T	8.401e^-6	0.606	DOWNSTREAM CG10185 INTRON msps
X	5716933	X_5716933_SNP [dm3] X_5822900_SNP [dm6]	G	A	1.058e^-5	0.704	INTRON CG15765
2L	7210991	2L_7210991_SNP [dm3] 2L_7210991_SNP [dm6]	T	A	1.060e^-5	0.704	INTRON CG13784
3R	8346633	3R_8346633_SNP [dm3] 3R_12520911_SNP [dm6]	G	A	1.088e^-5	0.704	INTRON Octbeta3R
3R	11587690	3R_11587690_SNP [dm3] 3R_15761968_SNP [dm6]	T	C	1.133e^-5	0.708	INTERGENIC
X	6137091	X_6137091_SNP [dm3] X_6243058_SNP [dm6]	G	A	1.214e^-5	0.71	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12592685	2L_12592685_SNP [dm3] 2L_12592685_SNP [dm6]	T	A	1.226e^-5	0.71	INTRON nub
2L	20934671	2L_20934671_SNP [dm3] 2L_20934671_SNP [dm6]	G	A	1.262e^-5	0.71	UPSTREAM CG9270 INTERGENIC
2R	15120398	2R_15120398_SNP [dm3] 2R_19232893_SNP [dm6]	A	T	1.286e^-5	0.71	INTRON cora	TF binding site mE1_TFBS_HSA
3L	8863761	3L_8863761_DEL [dm3] 3L_8870661_DEL [dm6]	CATTATTAT	C	1.433e^-5	0.747	INTRON dally
3L	17583389	3L_17583389_SNP [dm3] 3L_17590289_SNP [dm6]	C	A	1.436e^-5	0.747	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5610219	3L_5610219_SNP [dm3] 3L_5617119_SNP [dm6]	T	C	1.473e^-5	0.747	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18837007	3L_18837007_SNP [dm3] 3L_18843907_SNP [dm6]	A	T	1.532e^-5	0.756	INTRON Indy
3L	1590923	3L_1590923_SNP [dm3] 3L_1590923_SNP [dm6]	C	G	1.647e^-5	0.783	INTRON CG13917
3R	13639450	3R_13639450_SNP [dm3] 3R_17813728_SNP [dm6]	A	G	1.670e^-5	0.783	INTRON tinc	TF binding site mE1_TFBS_HSA
2L	11819266	2L_11819266_SNP [dm3] 2L_11819266_SNP [dm6]	T	G	1.797e^-5	0.81	INTRON Pde1c
3L	18837004	3L_18837004_SNP [dm3] 3L_18843904_SNP [dm6]	G	C	1.845e^-5	0.81	INTRON Indy
3R	25395959	3R_25395959_SNP [dm3] 3R_29570237_SNP [dm6]	T	A	1.908e^-5	0.81	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9985612	3L_9985612_SNP [dm3] 3L_9992512_SNP [dm6]	G	C	1.937e^-5	0.81	INTRON dpr6
3L	1590897	3L_1590897_SNP [dm3] 3L_1590897_SNP [dm6]	T	C	1.944e^-5	0.81	INTRON CG13917
3L	5561727	3L_5561727_SNP [dm3] 3L_5568627_SNP [dm6]	C	T	1.994e^-5	0.812	SYNONYMOUS_CODING Msr-110 UPSTREAM snmRNA:357	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7696878	2L_7696878_SNP [dm3] 2L_7696878_SNP [dm6]	T	A	2.034e^-5	0.812	INTRON Tep2
X	13069335	X_13069335_SNP [dm3] X_13175302_SNP [dm6]	C	T	2.195e^-5	0.817	INTRON CG34411	TF binding site BDTNP1_TFBS_twi
3R	13747042	3R_13747042_SNP [dm3] 3R_17921320_SNP [dm6]	C	A	2.218e^-5	0.817	UTR_5_PRIME cpo
3L	17123463	3L_17123463_SNP [dm3] 3L_17130363_SNP [dm6]	G	C	2.307e^-5	0.817	INTRON Rbp6
2R	20195111	2R_20195111_SNP [dm3] 2R_24307588_SNP [dm6]	G	A	2.354e^-5	0.817	INTRON betaTub60D	regulatory region REDfly_CRMs
2R	19238645	2R_19238645_SNP [dm3] 2R_23351122_SNP [dm6]	C	G	2.362e^-5	0.817	UPSTREAM CG34210 INTERGENIC
2L	8131413	2L_8131413_SNP [dm3] 2L_8131413_SNP [dm6]	T	A	2.412e^-5	0.817	UTR_5_PRIME CG8668	TF binding site BDTNP1_TFBS_da
3R	8288562	3R_8288562_SNP [dm3] 3R_12462840_SNP [dm6]	C	T	2.436e^-5	0.817	DOWNSTREAM CG12267 INTRON CG5608	TF binding site mE1_TFBS_inv
3L	8211275	3L_8211275_SNP [dm3] 3L_8218175_SNP [dm6]	A	T	2.439e^-5	0.817	DOWNSTREAM CG13674 INTERGENIC
2L	11417675	2L_11417675_SNP [dm3] 2L_11417675_SNP [dm6]	T	G	2.466e^-5	0.817	INTERGENIC	TF binding site mE1_TFBS_cad
X	16803257	X_16803257_SNP [dm3] X_16909224_SNP [dm6]	G	T	2.484e^-5	0.817	INTRON CR44754
2L	20934672	2L_20934672_SNP [dm3] 2L_20934672_SNP [dm6]	A	T	2.644e^-5	0.848	UPSTREAM CG9270 INTERGENIC
3R	6461164	3R_6461164_SNP [dm3] 3R_10635442_SNP [dm6]	A	C	2.668e^-5	0.848	INTRON hth
3L	1590899	3L_1590899_SNP [dm3] 3L_1590899_SNP [dm6]	T	A	2.837e^-5	0.867	INTRON CG13917
2R	12909983	2R_12909983_SNP [dm3] 2R_17022478_SNP [dm6]	G	T	2.844e^-5	0.867	SYNONYMOUS_CODING Ark	TF binding site mE1_TFBS_sens
3L	15774763	3L_15774763_SNP [dm3] 3L_15781663_SNP [dm6]	T	C	2.866e^-5	0.867	INTERGENIC
3R	25394283	3R_25394283_SNP [dm3] 3R_29568561_SNP [dm6]	A	G	2.941e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18257588	2R_18257588_INS [dm3] 2R_22370083_INS [dm6]	C	CCTC	2.994e^-5	0.869	INTRON Liprin-gamma
2L	11922449	2L_11922449_SNP [dm3] 2L_11922449_SNP [dm6]	T	A	3.106e^-5	0.869	INTRON Pde1c
3R	7138798	3R_7138798_SNP [dm3] 3R_11313076_SNP [dm6]	G	A	3.184e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11823067	2L_11823067_SNP [dm3] 2L_11823067_SNP [dm6]	G	T	3.221e^-5	0.869	INTRON Pde1c
2L	9663622	2L_9663622_SNP [dm3] 2L_9663622_SNP [dm6]	G	A	3.230e^-5	0.869	INTERGENIC
3R	7138756	3R_7138756_SNP [dm3] 3R_11313034_SNP [dm6]	T	C	3.243e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12592679	2L_12592679_SNP [dm3] 2L_12592679_SNP [dm6]	C	T	3.305e^-5	0.869	INTRON nub
3L	17145867	3L_17145867_SNP [dm3] 3L_17152767_SNP [dm6]	T	A	3.308e^-5	0.869	INTRON Rbp6
2L	19439641	2L_19439641_SNP [dm3] 2L_19439641_SNP [dm6]	G	T	3.335e^-5	0.869	UPSTREAM CG10237 INTRON CG10237	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11197259	2L_11197259_SNP [dm3] 2L_11197259_SNP [dm6]	C	T	3.428e^-5	0.869	INTRON Ca-beta
X	17647393	X_17647393_INS [dm3] X_17753360_INS [dm6]	A	TTAACT	3.533e^-5	0.869	INTERGENIC
3L	9425183	3L_9425183_SNP [dm3] 3L_9432083_SNP [dm6]	A	G	3.560e^-5	0.869	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10869580	2L_10869580_SNP [dm3] 2L_10869580_SNP [dm6]	T	C	3.661e^-5	0.869	UPSTREAM CG12517 INTERGENIC
3R	24697851	3R_24697851_SNP [dm3] 3R_28872129_SNP [dm6]	T	C	3.691e^-5	0.869	UPSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25394303	3R_25394303_DEL [dm3] 3R_29568581_DEL [dm6]	GGAAA	T	3.702e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12553396	2L_12553396_SNP [dm3] 2L_12553396_SNP [dm6]	G	A	3.748e^-5	0.869	INTERGENIC
3L	15774762	3L_15774762_SNP [dm3] 3L_15781662_SNP [dm6]	G	T	3.791e^-5	0.869	INTERGENIC
2L	16045056	2L_16045056_SNP [dm3] 2L_16045056_SNP [dm6]	C	A	3.793e^-5	0.869	INTRON BicC & 1 other
2L	8131488	2L_8131488_SNP [dm3] 2L_8131488_SNP [dm6]	G	T	3.814e^-5	0.869	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da
2L	11417684	2L_11417684_SNP [dm3] 2L_11417684_SNP [dm6]	C	T	3.889e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1593572	3L_1593572_SNP [dm3] 3L_1593572_SNP [dm6]	G	A	3.979e^-5	0.869	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1595568	3L_1595568_SNP [dm3] 3L_1595568_SNP [dm6]	A	G	3.993e^-5	0.869	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2799791	3R_2799791_SNP [dm3] 3R_6974069_SNP [dm6]	T	C	4.234e^-5	0.869	INTRON Antp	TF binding site mE1_TFBS_bab1
2L	11922428	2L_11922428_SNP [dm3] 2L_11922428_SNP [dm6]	G	A	4.264e^-5	0.869	INTRON Pde1c
2R	19249905	2R_19249905_SNP [dm3] 2R_23362382_SNP [dm6]	C	T	4.264e^-5	0.869	SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7130115	3R_7130115_SNP [dm3] 3R_11304393_SNP [dm6]	C	T	4.278e^-5	0.869	INTRON CR31386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16972415	2R_16972415_SNP [dm3] 2R_21084910_SNP [dm6]	T	G	4.292e^-5	0.869	INTRON Treh	TF binding site mE1_TFBS_cad
2L	20934675	2L_20934675_SNP [dm3] 2L_20934675_SNP [dm6]	C	G	4.369e^-5	0.869	UPSTREAM CG9270 INTERGENIC
3R	8888316	3R_8888316_SNP [dm3] 3R_13062594_SNP [dm6]	A	G	4.383e^-5	0.869	UTR_5_PRIME sim INTRON sim
3L	9316342	3L_9316342_SNP [dm3] 3L_9323242_SNP [dm6]	T	C	4.399e^-5	0.869	INTERGENIC
2L	14865403	2L_14865403_SNP [dm3] 2L_14865403_SNP [dm6]	C	A	4.436e^-5	0.869	INTERGENIC
X	8814616	X_8814616_SNP [dm3] X_8920583_SNP [dm6]	T	C	4.505e^-5	0.869	UPSTREAM CR44111 INTRON rdgA
2L	11348104	2L_11348104_SNP [dm3] 2L_11348104_SNP [dm6]	T	C	4.515e^-5	0.869	INTERGENIC
2L	10869670	2L_10869670_SNP [dm3] 2L_10869670_SNP [dm6]	T	C	4.528e^-5	0.869	UPSTREAM CG12517 INTERGENIC	TF binding site mE1_TFBS_inv
3L	18269289	3L_18269289_SNP [dm3] 3L_18276189_SNP [dm6]	T	G	4.744e^-5	0.869	INTERGENIC
2L	15854133	2L_15854133_SNP [dm3] 2L_15854133_SNP [dm6]	A	G	4.774e^-5	0.869	START_GAINED Tektin-A UTR_5_PRIME Tektin-A UPSTREAM Tektin-A DOWNSTREAM CG13243
3L	7307650	3L_7307650_SNP [dm3] 3L_7314550_SNP [dm6]	A	T	4.784e^-5	0.869	INTERGENIC
X	4448450	X_4448450_SNP [dm3] X_4554417_SNP [dm6]	G	C	4.907e^-5	0.869	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1591434	3L_1591434_SNP [dm3] 3L_1591434_SNP [dm6]	C	A	4.909e^-5	0.869	INTRON CG13917
X	4441949	X_4441949_SNP [dm3] X_4547916_SNP [dm6]	T	C	4.909e^-5	0.869	SYNONYMOUS_CODING Usf INTRON CR32773	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	15244957	2L_15244957_SNP [dm3] 2L_15244957_SNP [dm6]	A	G	4.928e^-5	0.869	INTRON ZnT35C
2L	20934666	2L_20934666_MNP [dm3] 2L_20934666_MNP [dm6]	CACT	GTTA	5.112e^-5	0.869	UPSTREAM CG9270 INTERGENIC
X	8184605	X_8184605_INS [dm3] X_8290572_INS [dm6]	A	ATCAAAAAAA	5.173e^-5	0.869	INTRON nAChRalpha3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16045029	2L_16045029_SNP [dm3] 2L_16045029_SNP [dm6]	T	G	5.176e^-5	0.869	INTRON BicC & 1 other
2R	13850430	2R_13850430_SNP [dm3] 2R_17962925_SNP [dm6]	A	G	5.276e^-5	0.869	INTERGENIC
3R	11885416	3R_11885416_SNP [dm3] 3R_16059694_SNP [dm6]	C	T	5.307e^-5	0.869	DOWNSTREAM CG10185 INTRON msps
2L	20934656	2L_20934656_SNP [dm3] 2L_20934656_SNP [dm6]	A	C	5.398e^-5	0.869	UPSTREAM CG9270 INTERGENIC
3L	19315193	3L_19315193_SNP [dm3] 3L_19322093_SNP [dm6]	T	G	5.476e^-5	0.869	INTRON pip
3L	18602669	3L_18602669_SNP [dm3] 3L_18609569_SNP [dm6]	C	T	5.480e^-5	0.869	UPSTREAM CG32201 DOWNSTREAM CG18231 INTRON CG4174 & 1 other
2R	19059777	2R_19059777_SNP [dm3] 2R_23172254_SNP [dm6]	G	A	5.561e^-5	0.869	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18982358	3R_18982358_SNP [dm3] 3R_23156636_SNP [dm6]	T	A	5.572e^-5	0.869	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11885421	3R_11885421_SNP [dm3] 3R_16059699_SNP [dm6]	C	T	5.605e^-5	0.869	DOWNSTREAM CG10185 INTRON msps
2L	7226594	2L_7226594_DEL [dm3] 2L_7226594_DEL [dm6]	GG	G	5.655e^-5	0.869	UTR_3_PRIME Ndae1 INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
X	15227105	X_15227105_SNP [dm3] X_15333072_SNP [dm6]	A	G	5.658e^-5	0.869	START_GAINED CG9114 UTR_5_PRIME CG9114 UPSTREAM HDAC6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	24653328	3R_24653328_SNP [dm3] 3R_28827606_SNP [dm6]	T	C	5.678e^-5	0.869	UPSTREAM WASp INTRON WASp
3L	15774768	3L_15774768_INS [dm3] 3L_15781668_INS [dm6]	C	CCG	5.779e^-5	0.869	INTERGENIC
3L	5610261	3L_5610261_SNP [dm3] 3L_5617161_SNP [dm6]	T	A	5.800e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8859795	3L_8859795_SNP [dm3] 3L_8866695_SNP [dm6]	A	G	5.934e^-5	0.869	INTRON dally
3L	2993748	3L_2993748_SNP [dm3] 3L_2993748_SNP [dm6]	C	T	5.942e^-5	0.869	INTERGENIC
3R	10139020	3R_10139020_SNP [dm3] 3R_14313298_SNP [dm6]	C	T	5.999e^-5	0.869	SYNONYMOUS_CODING CG31321
2L	16045036	2L_16045036_SNP [dm3] 2L_16045036_SNP [dm6]	T	G	6.054e^-5	0.869	INTRON BicC & 1 other
2R	15120327	2R_15120327_SNP [dm3] 2R_19232822_SNP [dm6]	A	C	6.090e^-5	0.869	INTRON cora	TF binding site mE1_TFBS_HSA
3L	21255553	3L_21255553_SNP [dm3] 3L_21262453_SNP [dm6]	T	A	6.095e^-5	0.869	INTRON Eip78C
2L	11819280	2L_11819280_SNP [dm3] 2L_11819280_SNP [dm6]	C	A	6.186e^-5	0.869	INTRON Pde1c
2L	8883344	2L_8883344_SNP [dm3] 2L_8883344_SNP [dm6]	C	T	6.200e^-5	0.869	INTERGENIC
3R	8506260	3R_8506260_SNP [dm3] 3R_12680538_SNP [dm6]	C	T	6.261e^-5	0.869	INTRON Cyp313a4
3R	5757246	3R_5757246_SNP [dm3] 3R_9931524_SNP [dm6]	C	G	6.296e^-5	0.869	INTRON Glut4EF
2L	12312253	2L_12312253_SNP [dm3] 2L_12312253_SNP [dm6]	A	T	6.390e^-5	0.869	UTR_3_PRIME aret INTRON aret
3L	9496260	3L_9496260_SNP [dm3] 3L_9503160_SNP [dm6]	T	C	6.452e^-5	0.869	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8344006	3R_8344006_SNP [dm3] 3R_12518284_SNP [dm6]	A	G	6.499e^-5	0.869	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	9514910	3L_9514910_SNP [dm3] 3L_9521810_SNP [dm6]	G	A	6.536e^-5	0.869	INTRON CG33700
2L	20934662	2L_20934662_SNP [dm3] 2L_20934662_SNP [dm6]	C	A	6.554e^-5	0.869	UPSTREAM CG9270 INTERGENIC
X	5093625	X_5093625_SNP [dm3] X_5199592_SNP [dm6]	A	G	6.584e^-5	0.869	INTRON rg & 1 other
2R	19063283	2R_19063283_SNP [dm3] 2R_23175760_SNP [dm6]	C	A	6.612e^-5	0.869	INTRON CG34371
3L	21731691	3L_21731691_SNP [dm3] 3L_21738591_SNP [dm6]	A	T	6.623e^-5	0.869	UPSTREAM CG14567 DOWNSTREAM CG14566 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12501292	2R_12501292_SNP [dm3] 2R_16613787_SNP [dm6]	C	A	6.810e^-5	0.869	INTRON CG5065
2L	12249238	2L_12249238_SNP [dm3] 2L_12249238_SNP [dm6]	T	C	6.814e^-5	0.869	INTRON aret
2L	9982627	2L_9982627_SNP [dm3] 2L_9982627_SNP [dm6]	T	A	6.837e^-5	0.869	INTERGENIC	regulatory region REDfly_CRMs
2L	262825	2L_262825_SNP [dm3] 2L_262825_SNP [dm6]	C	A	6.842e^-5	0.869	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 INTRON CG3645 EXON CR44219
3L	9802329	3L_9802329_SNP [dm3] 3L_9809229_SNP [dm6]	G	T	6.897e^-5	0.869	DOWNSTREAM CG32052 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	6.905e^-5	0.869	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2L	20934664	2L_20934664_SNP [dm3] 2L_20934664_SNP [dm6]	T	A	6.925e^-5	0.869	UPSTREAM CG9270 INTERGENIC
2R	15120383	2R_15120383_SNP [dm3] 2R_19232878_SNP [dm6]	C	T	6.937e^-5	0.869	INTRON cora	TF binding site mE1_TFBS_HSA
X	16290036	X_16290036_SNP [dm3] X_16396003_SNP [dm6]	C	T	6.955e^-5	0.869	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
X	5716685	X_5716685_DEL [dm3] X_5822652_DEL [dm6]	CTGCC	TCGA	6.972e^-5	0.869	INTRON CG15765	TF binding site mE1_TFBS_chinmo
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	7.108e^-5	0.869	INTRON Ca-beta
2L	20816513	2L_20816513_SNP [dm3] 2L_20816513_SNP [dm6]	C	T	7.144e^-5	0.869	UTR_3_PRIME CheB38b UPSTREAM CG33322
3R	26405794	3R_26405794_SNP [dm3] 3R_30580072_SNP [dm6]	C	G	7.160e^-5	0.869	INTRON CG9702	TF binding site mE1_TFBS_HSA
2L	15158216	2L_15158216_SNP [dm3] 2L_15158216_SNP [dm6]	T	C	7.199e^-5	0.869	INTERGENIC
X	3202636	X_3202636_SNP [dm3] X_3308603_SNP [dm6]	T	G	7.218e^-5	0.869	INTRON dnc
3R	24650890	3R_24650890_DEL [dm3] 3R_28825168_DEL [dm6]	ATTC	T	7.409e^-5	0.869	UTR_3_PRIME WASp DOWNSTREAM CG1647
2L	14865404	2L_14865404_SNP [dm3] 2L_14865404_SNP [dm6]	C	A	7.427e^-5	0.869	INTERGENIC
3R	13380750	3R_13380750_SNP [dm3] 3R_17555028_SNP [dm6]	C	T	7.479e^-5	0.869	INTERGENIC
2L	14977938	2L_14977938_SNP [dm3] 2L_14977938_SNP [dm6]	C	A	7.597e^-5	0.869	INTRON mol
3R	8495201	3R_8495201_SNP [dm3] 3R_12669479_SNP [dm6]	C	T	7.658e^-5	0.869	INTRON CG14395
2R	11954400	2R_11954400_INS [dm3] 2R_16066895_INS [dm6]	A	ACAAGAA	7.694e^-5	0.869	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18576660	2R_18576660_SNP [dm3] 2R_22689155_SNP [dm6]	G	C	7.722e^-5	0.869	UPSTREAM CR44763 & 1 other EXON CR44762	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15120351	2R_15120351_SNP [dm3] 2R_19232846_SNP [dm6]	A	G	7.738e^-5	0.869	INTRON cora	TF binding site mE1_TFBS_HSA
2L	12227922	2L_12227922_SNP [dm3] 2L_12227922_SNP [dm6]	G	A	7.857e^-5	0.869	INTRON aret
3R	24879465	3R_24879465_SNP [dm3] 3R_29053743_SNP [dm6]	G	A	7.900e^-5	0.869	SYNONYMOUS_CODING CG11842 UPSTREAM CG11843	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17675939	2L_17675939_SNP [dm3] 2L_17675939_SNP [dm6]	C	A	7.919e^-5	0.869	INTRON CadN
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	7.967e^-5	0.869	INTRON 4EHP
2L	11822996	2L_11822996_SNP [dm3] 2L_11822996_SNP [dm6]	C	A	8.016e^-5	0.869	INTRON Pde1c
2R	9452154	2R_9452154_SNP [dm3] 2R_13564649_SNP [dm6]	G	T	8.021e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	7489481	3L_7489481_DEL [dm3] 3L_7496381_DEL [dm6]	TT	T	8.049e^-5	0.869	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
X	5114166	X_5114166_SNP [dm3] X_5220133_SNP [dm6]	A	G	8.055e^-5	0.869	INTRON CG15465 & 1 other
X	14875133	X_14875133_DEL [dm3] X_14981100_DEL [dm6]	AA	C	8.065e^-5	0.869	INTRON eag
3L	1583784	3L_1583784_SNP [dm3] 3L_1583784_SNP [dm6]	C	A	8.171e^-5	0.869	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11486235	3L_11486235_SNP [dm3] 3L_11493135_SNP [dm6]	A	G	8.212e^-5	0.869	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9328580	3L_9328580_SNP [dm3] 3L_9335480_SNP [dm6]	T	C	8.267e^-5	0.869	UPSTREAM PGRP-LA INTRON PGRP-LA
3L	17089422	3L_17089422_SNP [dm3] 3L_17096322_SNP [dm6]	C	G	8.274e^-5	0.869	INTRON Rbp6
2R	7050072	2R_7050072_SNP [dm3] 2R_11162567_SNP [dm6]	T	C	8.277e^-5	0.869	INTRON shn & 1 other
2L	11194445	2L_11194445_SNP [dm3] 2L_11194445_SNP [dm6]	G	T	8.394e^-5	0.869	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5610194	3L_5610194_SNP [dm3] 3L_5617094_SNP [dm6]	A	T	8.398e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11417676	2L_11417676_SNP [dm3] 2L_11417676_SNP [dm6]	T	C	8.413e^-5	0.869	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19777455	3R_19777455_SNP [dm3] 3R_23951733_SNP [dm6]	T	A	8.414e^-5	0.869	DOWNSTREAM Aats-glupro INTERGENIC
3L	17618060	3L_17618060_SNP [dm3] 3L_17624960_SNP [dm6]	A	T	8.453e^-5	0.869	INTRON CG7510
3R	6856799	3R_6856799_SNP [dm3] 3R_11031077_SNP [dm6]	G	T	8.453e^-5	0.869	INTRON CG34114
3L	10049471	3L_10049471_SNP [dm3] 3L_10056371_SNP [dm6]	T	A	8.544e^-5	0.869	INTRON dpr6
2R	10526798	2R_10526798_SNP [dm3] 2R_14639293_SNP [dm6]	C	T	8.548e^-5	0.869	NON_SYNONYMOUS_CODING CG42715 DOWNSTREAM CG43236 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11010697	2L_11010697_SNP [dm3] 2L_11010697_SNP [dm6]	C	A	8.568e^-5	0.869	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	18330779	2L_18330779_SNP [dm3] 2L_18330779_SNP [dm6]	T	A	8.582e^-5	0.869	INTRON Fas3	TF binding site mE1_TFBS_inv
X	16289991	X_16289991_SNP [dm3] X_16395958_SNP [dm6]	T	A	8.616e^-5	0.869	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
X	17647342	X_17647342_SNP [dm3] X_17753309_SNP [dm6]	T	G	8.745e^-5	0.872	INTERGENIC
2L	12553436	2L_12553436_SNP [dm3] 2L_12553436_SNP [dm6]	G	A	8.790e^-5	0.872	INTERGENIC
3R	7127808	3R_7127808_SNP [dm3] 3R_11302086_SNP [dm6]	T	A	8.876e^-5	0.872	INTRON CR31386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13284458	2L_13284458_SNP [dm3] 2L_13284458_SNP [dm6]	T	G	8.886e^-5	0.872	UTR_3_PRIME Drep-4 UPSTREAM CR44083 DOWNSTREAM CG44085
3R	18982340	3R_18982340_SNP [dm3] 3R_23156618_SNP [dm6]	G	T	8.936e^-5	0.872	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	7050218	2R_7050218_SNP [dm3] 2R_11162713_SNP [dm6]	C	T	8.969e^-5	0.872	INTRON shn & 1 other
2L	21006971	2L_21006971_SNP [dm3] 2L_21006971_SNP [dm6]	A	G	8.973e^-5	0.872	INTRON CG42238
2L	11193068	2L_11193068_SNP [dm3] 2L_11193068_SNP [dm6]	T	C	9.086e^-5	0.874	INTRON Ca-beta
2L	20816508	2L_20816508_SNP [dm3] 2L_20816508_SNP [dm6]	A	T	9.118e^-5	0.874	UTR_3_PRIME CheB38b UPSTREAM CG33322
3L	5610129	3L_5610129_SNP [dm3] 3L_5617029_SNP [dm6]	A	C	9.192e^-5	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	16864763	3L_16864763_INS [dm3] 3L_16871663_INS [dm6]	T	TT	9.212e^-5	0.874	INTRON Lmpt
2L	13730030	2L_13730030_INS [dm3] 2L_13730030_INS [dm6]	A	ATACACACA	9.268e^-5	0.874	INTERGENIC
3L	18836723	3L_18836723_SNP [dm3] 3L_18843623_SNP [dm6]	C	G	9.381e^-5	0.874	DOWNSTREAM CR32027 INTRON Indy
3L	19284303	3L_19284303_SNP [dm3] 3L_19291203_SNP [dm6]	T	A	9.480e^-5	0.874	INTRON Gbs-76A
2L	12143450	2L_12143450_SNP [dm3] 2L_12143450_SNP [dm6]	A	T	9.511e^-5	0.874	INTRON CG31760
2L	12143452	2L_12143452_SNP [dm3] 2L_12143452_SNP [dm6]	A	T	9.511e^-5	0.874	INTRON CG31760
2L	19336139	2L_19336139_SNP [dm3] 2L_19336139_SNP [dm6]	T	C	9.564e^-5	0.874	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	9.644e^-5	0.874	INTRON Cad87A
2R	19014941	2R_19014941_SNP [dm3] 2R_23127418_SNP [dm6]	G	C	9.708e^-5	0.874	UPSTREAM CR44456 DOWNSTREAM CR44455 INTERGENIC
3R	10279608	3R_10279608_SNP [dm3] 3R_14453886_SNP [dm6]	T	C	9.713e^-5	0.874	INTRON cv-c
X	8681815	X_8681815_SNP [dm3] X_8787782_SNP [dm6]	T	C	9.786e^-5	0.874	SYNONYMOUS_CODING Lim1
3R	17279077	3R_17279077_SNP [dm3] 3R_21453355_SNP [dm6]	T	A	9.865e^-5	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	20021302	2R_20021302_SNP [dm3] 2R_24133779_SNP [dm6]	A	C	1.001e^-4	0.874	UPSTREAM Zfrp8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	5860812	2R_5860812_SNP [dm3] 2R_9973307_SNP [dm6]	C	A	1.002e^-4	0.874	DOWNSTREAM CG12134 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	25494059	3R_25494059_SNP [dm3] 3R_29668337_SNP [dm6]	C	G	1.006e^-4	0.874	NON_SYNONYMOUS_CODING ppk20 UPSTREAM ppk30	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16933517	X_16933517_SNP [dm3] X_17039484_SNP [dm6]	C	T	1.012e^-4	0.874	INTRON CG45002
2L	11364177	2L_11364177_SNP [dm3] 2L_11364177_SNP [dm6]	A	C	1.013e^-4	0.874	INTRON salr	TF binding site mE1_TFBS_HSA
2L	9982642	2L_9982642_SNP [dm3] 2L_9982642_SNP [dm6]	C	G	1.029e^-4	0.874	INTERGENIC	regulatory region REDfly_CRMs
X	8814630	X_8814630_SNP [dm3] X_8920597_SNP [dm6]	C	T	1.038e^-4	0.874	UPSTREAM CR44111 INTRON rdgA
2L	11363844	2L_11363844_SNP [dm3] 2L_11363844_SNP [dm6]	C	T	1.039e^-4	0.874	INTRON salr	TF binding site mE1_TFBS_HSA
3L	17412712	3L_17412712_DEL [dm3] 3L_17419612_DEL [dm6]	CTGACGTACTATC...	C	1.063e^-4	0.874	INTRON blot	TF binding site BDTNP1_TFBS_da
3R	8366548	3R_8366548_SNP [dm3] 3R_12540826_SNP [dm6]	G	A	1.067e^-4	0.874	INTRON Octbeta3R
3R	8379793	3R_8379793_SNP [dm3] 3R_12554071_SNP [dm6]	C	T	1.070e^-4	0.874	INTRON Octbeta2R
3R	10129859	3R_10129859_SNP [dm3] 3R_14304137_SNP [dm6]	G	A	1.072e^-4	0.874	SYNONYMOUS_CODING CG3259 DOWNSTREAM su_Hw_	TF binding site mE1_TFBS_cad
3R	17481292	3R_17481292_SNP [dm3] 3R_21655570_SNP [dm6]	A	T	1.080e^-4	0.874	INTRON E2f	TF binding site BDTNP1_TFBS_da
2L	7210988	2L_7210988_SNP [dm3] 2L_7210988_SNP [dm6]	A	G	1.081e^-4	0.874	INTRON CG13784
3R	17576512	3R_17576512_SNP [dm3] 3R_21750790_SNP [dm6]	T	G	1.085e^-4	0.874	INTRON CG31233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21601602	3R_21601602_SNP [dm3] 3R_25775880_SNP [dm6]	C	A	1.091e^-4	0.874	NON_SYNONYMOUS_CODING CG17196 UPSTREAM CG17197 & 1 other DOWNSTREAM CG17195
3L	15774756	3L_15774756_SNP [dm3] 3L_15781656_SNP [dm6]	G	A	1.092e^-4	0.874	INTERGENIC
2L	11441399	2L_11441399_SNP [dm3] 2L_11441399_SNP [dm6]	G	A	1.095e^-4	0.874	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	11839111	2R_11839111_SNP [dm3] 2R_15951606_SNP [dm6]	A	G	1.096e^-4	0.874	UPSTREAM Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck
3R	17279091	3R_17279091_SNP [dm3] 3R_21453369_SNP [dm6]	C	A	1.100e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	2485293	3L_2485293_SNP [dm3] 3L_2485293_SNP [dm6]	T	C	1.102e^-4	0.874	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	7127818	3R_7127818_SNP [dm3] 3R_11302096_SNP [dm6]	G	T	1.102e^-4	0.874	INTRON CR31386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26405022	3R_26405022_SNP [dm3] 3R_30579300_SNP [dm6]	G	A	1.108e^-4	0.874	UPSTREAM CG9702 DOWNSTREAM tmod INTERGENIC
3L	5610140	3L_5610140_SNP [dm3] 3L_5617040_SNP [dm6]	G	T	1.116e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	7121612	3R_7121612_SNP [dm3] 3R_11295890_SNP [dm6]	T	A	1.116e^-4	0.874	INTRON CR31386	TF binding site mE1_TFBS_inv
3R	10122995	3R_10122995_SNP [dm3] 3R_14297273_SNP [dm6]	C	A	1.127e^-4	0.874	UPSTREAM CG12207 INTRON CG12207
3R	19442328	3R_19442328_SNP [dm3] 3R_23616606_SNP [dm6]	G	A	1.128e^-4	0.874	INTRON CG31145
3L	6089261	3L_6089261_SNP [dm3] 3L_6096161_SNP [dm6]	G	T	1.134e^-4	0.874	INTRON loj	TF binding site mE1_TFBS_sens
3R	4891435	3R_4891435_SNP [dm3] 3R_9065713_SNP [dm6]	G	A	1.141e^-4	0.874	NON_SYNONYMOUS_CODING Ada UPSTREAM beag DOWNSTREAM pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12474615	2R_12474615_SNP [dm3] 2R_16587110_SNP [dm6]	T	A	1.146e^-4	0.874	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
2L	10866751	2L_10866751_SNP [dm3] 2L_10866751_SNP [dm6]	G	A	1.147e^-4	0.874	INTERGENIC
3L	9511560	3L_9511560_SNP [dm3] 3L_9518460_SNP [dm6]	A	G	1.147e^-4	0.874	INTRON CG33700
2L	19435858	2L_19435858_SNP [dm3] 2L_19435858_SNP [dm6]	A	T	1.172e^-4	0.874	UTR_3_PRIME CG10237 DOWNSTREAM Rab9
3L	1332505	3L_1332505_SNP [dm3] 3L_1332505_SNP [dm6]	T	C	1.180e^-4	0.874	SYNONYMOUS_CODING msd5 DOWNSTREAM mtacp1 & 2 others
3L	19314785	3L_19314785_SNP [dm3] 3L_19321685_SNP [dm6]	G	T	1.198e^-4	0.874	INTRON pip
X	12452321	X_12452321_SNP [dm3] X_12558288_SNP [dm6]	T	C	1.200e^-4	0.874	INTRON CG43921
3R	8884690	3R_8884690_SNP [dm3] 3R_13058968_SNP [dm6]	A	G	1.208e^-4	0.874	INTRON sim	TF binding site mE1_TFBS_Kr
3L	11588572	3L_11588572_SNP [dm3] 3L_11595472_SNP [dm6]	G	C	1.212e^-4	0.874	INTERGENIC
2L	14355740	2L_14355740_SNP [dm3] 2L_14355740_SNP [dm6]	T	C	1.215e^-4	0.874	UPSTREAM l_2_34Fd INTRON Rab14 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12613637	2L_12613637_SNP [dm3] 2L_12613637_SNP [dm6]	G	A	1.228e^-4	0.874	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Kr mE1_TFBS_Trl
3R	9327265	3R_9327265_SNP [dm3] 3R_13501543_SNP [dm6]	C	T	1.232e^-4	0.874	INTERGENIC
3R	11885042	3R_11885042_SNP [dm3] 3R_16059320_SNP [dm6]	T	C	1.233e^-4	0.874	SYNONYMOUS_CODING msps
3L	1002551	3L_1002551_SNP [dm3] 3L_1002551_SNP [dm6]	C	T	1.234e^-4	0.874	INTRON trio
3L	15147300	3L_15147300_SNP [dm3] 3L_15154200_SNP [dm6]	C	T	1.245e^-4	0.874	UTR_3_PRIME FucTA DOWNSTREAM Msh6
X	13873635	X_13873635_SNP [dm3] X_13979602_SNP [dm6]	T	A	1.250e^-4	0.874	INTRON mamo
2L	3508029	2L_3508029_SNP [dm3] 2L_3508029_SNP [dm6]	T	C	1.250e^-4	0.874	UTR_5_PRIME tim UPSTREAM tim & 1 other INTRON tim
3R	8380743	3R_8380743_DEL [dm3] 3R_12555021_DEL [dm6]	TT	T	1.251e^-4	0.874	INTRON Octbeta2R
3L	21583931	3L_21583931_SNP [dm3] 3L_21590831_SNP [dm6]	G	C	1.260e^-4	0.874	INTRON TfAP-2
2R	10851778	2R_10851778_SNP [dm3] 2R_14964273_SNP [dm6]	G	T	1.265e^-4	0.874	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18908235	2L_18908235_SNP [dm3] 2L_18908235_SNP [dm6]	A	G	1.266e^-4	0.874	INTERGENIC
X	18285011	X_18285011_SNP [dm3] X_18390978_SNP [dm6]	C	T	1.266e^-4	0.874	DOWNSTREAM Tsf1 INTRON CG32549	TF binding site mE1_TFBS_chinmo
3R	13374887	3R_13374887_SNP [dm3] 3R_17549165_SNP [dm6]	T	C	1.268e^-4	0.874	INTERGENIC
2R	19240541	2R_19240541_INS [dm3] 2R_23353018_INS [dm6]	C	CACGC	1.268e^-4	0.874	DOWNSTREAM CG34210 INTERGENIC
3R	10217782	3R_10217782_SNP [dm3] 3R_14392060_SNP [dm6]	T	C	1.269e^-4	0.874	UTR_3_PRIME cv-c	TF binding site mE1_TFBS_zfh1
3L	4355966	3L_4355966_SNP [dm3] 3L_4355966_SNP [dm6]	C	T	1.271e^-4	0.874	INTRON Cip4
3R	10122990	3R_10122990_SNP [dm3] 3R_14297268_SNP [dm6]	C	A	1.276e^-4	0.874	UPSTREAM CG12207 INTRON CG12207
3L	18836900	3L_18836900_SNP [dm3] 3L_18843800_SNP [dm6]	G	A	1.281e^-4	0.874	INTRON Indy
X	6099481	X_6099481_SNP [dm3] X_6205448_SNP [dm6]	A	G	1.282e^-4	0.874	INTERGENIC
2R	10526790	2R_10526790_SNP [dm3] 2R_14639285_SNP [dm6]	G	T	1.284e^-4	0.874	NON_SYNONYMOUS_CODING CG42715 DOWNSTREAM CG43236 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7070332	2R_7070332_SNP [dm3] 2R_11182827_SNP [dm6]	G	C	1.285e^-4	0.874	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15774783	3L_15774783_SNP [dm3] 3L_15781683_SNP [dm6]	G	T	1.288e^-4	0.874	INTERGENIC
3L	19558358	3L_19558358_SNP [dm3] 3L_19565258_SNP [dm6]	A	G	1.289e^-4	0.874	DOWNSTREAM mir-9a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3R	8542603	3R_8542603_SNP [dm3] 3R_12716881_SNP [dm6]	A	T	1.292e^-4	0.874	INTRON Men
3L	11039110	3L_11039110_SNP [dm3] 3L_11046010_SNP [dm6]	A	G	1.298e^-4	0.874	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9109300	3L_9109300_SNP [dm3] 3L_9116200_SNP [dm6]	T	C	1.303e^-4	0.874	INTRON bol
X	14881902	X_14881902_SNP [dm3] X_14987869_SNP [dm6]	A	C	1.304e^-4	0.874	INTRON eag	TF binding site BDTNP1_TFBS_dl
3R	6461131	3R_6461131_SNP [dm3] 3R_10635409_SNP [dm6]	A	G	1.319e^-4	0.874	INTRON hth
X	14763147	X_14763147_SNP [dm3] X_14869114_SNP [dm6]	T	C	1.322e^-4	0.874	INTRON Flo2 & 1 other
2L	15854328	2L_15854328_SNP [dm3] 2L_15854328_SNP [dm6]	G	C	1.326e^-4	0.874	UTR_5_PRIME Tektin-A DOWNSTREAM CG13243
3R	22829384	3R_22829384_SNP [dm3] 3R_27003662_SNP [dm6]	C	A	1.327e^-4	0.874	NON_SYNONYMOUS_CODING CG6296 DOWNSTREAM CG31077 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8211330	3L_8211330_SNP [dm3] 3L_8218230_SNP [dm6]	T	C	1.328e^-4	0.874	DOWNSTREAM CG13674 INTERGENIC
3R	2515731	3R_2515731_SNP [dm3] 3R_6690009_SNP [dm6]	G	A	1.343e^-4	0.874	SYNONYMOUS_CODING Ccp84Af DOWNSTREAM Ccp84Ae
2L	11197299	2L_11197299_SNP [dm3] 2L_11197299_SNP [dm6]	T	G	1.345e^-4	0.874	INTRON Ca-beta
3L	7583305	3L_7583305_SNP [dm3] 3L_7590205_SNP [dm6]	G	A	1.353e^-4	0.874	SYNONYMOUS_CODING CG7716
2L	14300332	2L_14300332_INS [dm3] 2L_14300332_INS [dm6]	T	TATATC	1.354e^-4	0.874	UPSTREAM wb INTRON wb
3L	1464053	3L_1464053_SNP [dm3] 3L_1464053_SNP [dm6]	G	A	1.361e^-4	0.874	UTR_5_PRIME rho INTRON Ptp61F	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10632419	2R_10632419_SNP [dm3] 2R_14744914_SNP [dm6]	T	C	1.369e^-4	0.874	INTRON CG12858
2L	19426685	2L_19426685_SNP [dm3] 2L_19426685_SNP [dm6]	G	A	1.373e^-4	0.874	UTR_5_PRIME CG16771 & 1 other UPSTREAM CG16771 & 1 other INTRON CG16771 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6363031	3L_6363031_SNP [dm3] 3L_6369931_SNP [dm6]	T	C	1.381e^-4	0.874	DOWNSTREAM CR45419 INTERGENIC
2L	7210981	2L_7210981_SNP [dm3] 2L_7210981_SNP [dm6]	C	T	1.383e^-4	0.874	INTRON CG13784
3R	17576520	3R_17576520_SNP [dm3] 3R_21750798_SNP [dm6]	C	G	1.397e^-4	0.874	INTRON CG31233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5702569	X_5702569_SNP [dm3] X_5808536_SNP [dm6]	A	T	1.398e^-4	0.874	UPSTREAM Prosbeta2R1 INTERGENIC
2L	14543768	2L_14543768_SNP [dm3] 2L_14543768_SNP [dm6]	T	C	1.413e^-4	0.874	INTERGENIC
3R	7140054	3R_7140054_SNP [dm3] 3R_11314332_SNP [dm6]	C	G	1.420e^-4	0.874	INTERGENIC
2L	15139082	2L_15139082_SNP [dm3] 2L_15139082_SNP [dm6]	C	A	1.432e^-4	0.874	INTERGENIC
3L	6470486	3L_6470486_SNP [dm3] 3L_6477386_SNP [dm6]	T	C	1.435e^-4	0.874	INTRON CG42747
3L	9509609	3L_9509609_INS [dm3] 3L_9516509_INS [dm6]	C	CG	1.443e^-4	0.874	INTRON CG33700
2L	12312293	2L_12312293_SNP [dm3] 2L_12312293_SNP [dm6]	A	G	1.443e^-4	0.874	UTR_3_PRIME aret INTRON aret
3L	9225981	3L_9225981_SNP [dm3] 3L_9232881_SNP [dm6]	T	C	1.445e^-4	0.874	INTERGENIC
2L	21764585	2L_21764585_SNP [dm3] 2L_21764585_SNP [dm6]	G	A	1.448e^-4	0.874	INTRON CG31612
X	12362948	X_12362948_SNP [dm3] X_12468915_SNP [dm6]	C	T	1.452e^-4	0.874	INTRON CG42258	TF binding site mE1_TFBS_HSA
X	477618	X_477618_SNP [dm3] X_583585_SNP [dm6]	G	A	1.457e^-4	0.874	INTRON vnd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13377111	3L_13377111_SNP [dm3] 3L_13384011_SNP [dm6]	G	T	1.460e^-4	0.874	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	1.462e^-4	0.874	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	496322	2L_496322_SNP [dm3] 2L_496322_SNP [dm6]	C	T	1.462e^-4	0.874	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	20934678	2L_20934678_SNP [dm3] 2L_20934678_SNP [dm6]	T	C	1.464e^-4	0.874	UPSTREAM CG9270 INTERGENIC
3R	6377671	3R_6377671_SNP [dm3] 3R_10551949_SNP [dm6]	G	A	1.474e^-4	0.874	INTRON hth
2L	12146251	2L_12146251_SNP [dm3] 2L_12146251_SNP [dm6]	A	G	1.478e^-4	0.874	INTRON CG31760
X	17647364	X_17647364_SNP [dm3] X_17753331_SNP [dm6]	G	A	1.480e^-4	0.874	INTERGENIC
X	4448456	X_4448456_SNP [dm3] X_4554423_SNP [dm6]	G	A	1.484e^-4	0.874	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9328579	3L_9328579_SNP [dm3] 3L_9335479_SNP [dm6]	C	G	1.484e^-4	0.874	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	19592620	2L_19592620_SNP [dm3] 2L_19592620_SNP [dm6]	A	G	1.489e^-4	0.874	INTRON Lar	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11348109	2L_11348109_SNP [dm3] 2L_11348109_SNP [dm6]	A	T	1.496e^-4	0.874	INTERGENIC
2R	12501352	2R_12501352_SNP [dm3] 2R_16613847_SNP [dm6]	G	A	1.497e^-4	0.874	INTRON CG5065
2R	19237572	2R_19237572_SNP [dm3] 2R_23350049_SNP [dm6]	T	G	1.497e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11819278	2L_11819278_SNP [dm3] 2L_11819278_SNP [dm6]	C	G	1.500e^-4	0.874	INTRON Pde1c
3L	5706094	3L_5706094_SNP [dm3] 3L_5712994_SNP [dm6]	G	A	1.500e^-4	0.874	UPSTREAM CG44521 INTRON sif
3R	7026951	3R_7026951_SNP [dm3] 3R_11201229_SNP [dm6]	C	A	1.501e^-4	0.874	INTRON cu
2L	9621585	2L_9621585_SNP [dm3] 2L_9621585_SNP [dm6]	G	A	1.510e^-4	0.874	SYNONYMOUS_CODING GlcAT-S
3L	19400666	3L_19400666_SNP [dm3] 3L_19407566_SNP [dm6]	T	A	1.510e^-4	0.874	INTRON CG32206
3R	19676807	3R_19676807_SNP [dm3] 3R_23851085_SNP [dm6]	A	T	1.515e^-4	0.874	UTR_3_PRIME CG34355
3L	9328509	3L_9328509_SNP [dm3] 3L_9335409_SNP [dm6]	A	G	1.516e^-4	0.874	UPSTREAM PGRP-LA INTRON PGRP-LA
X	6099335	X_6099335_SNP [dm3] X_6205302_SNP [dm6]	C	T	1.523e^-4	0.874	INTERGENIC
3R	7092222	3R_7092222_SNP [dm3] 3R_11266500_SNP [dm6]	T	C	1.524e^-4	0.874	INTERGENIC
2L	13492247	2L_13492247_DEL [dm3] 2L_13492247_DEL [dm6]	TTAAAGAATT	T	1.532e^-4	0.874	INTRON CG42784
2L	13492321	2L_13492321_SNP [dm3] 2L_13492321_SNP [dm6]	A	T	1.532e^-4	0.874	INTRON CG42784
X	5716734	X_5716734_DEL [dm3] X_5822701_DEL [dm6]	TACAT	A	1.532e^-4	0.874	INTRON CG15765	TF binding site mE1_TFBS_chinmo
3R	10663528	3R_10663528_SNP [dm3] 3R_14837806_SNP [dm6]	C	T	1.542e^-4	0.874	INTRON btsz
2L	14543767	2L_14543767_SNP [dm3] 2L_14543767_SNP [dm6]	T	C	1.543e^-4	0.874	INTERGENIC
2L	5718223	2L_5718223_SNP [dm3] 2L_5718223_SNP [dm6]	G	T	1.566e^-4	0.874	UTR_3_PRIME CG11149 DOWNSTREAM CG34011
X	5027252	X_5027252_SNP [dm3] X_5133219_SNP [dm6]	A	G	1.568e^-4	0.874	DOWNSTREAM Rpn13R INTRON rg & 1 other
2R	11736495	2R_11736495_SNP [dm3] 2R_15848990_SNP [dm6]	C	T	1.574e^-4	0.874	UTR_5_PRIME tun
2L	11037223	2L_11037223_DEL [dm3] 2L_11037223_DEL [dm6]	AA	A	1.575e^-4	0.874	INTRON Samuel
3R	26405783	3R_26405783_SNP [dm3] 3R_30580061_SNP [dm6]	T	A	1.575e^-4	0.874	INTRON CG9702	TF binding site mE1_TFBS_HSA
3R	8346482	3R_8346482_SNP [dm3] 3R_12520760_SNP [dm6]	C	T	1.579e^-4	0.874	INTRON Octbeta3R
2L	9982694	2L_9982694_SNP [dm3] 2L_9982694_SNP [dm6]	C	A	1.580e^-4	0.874	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
X	6184849	X_6184849_SNP [dm3] X_6290816_SNP [dm6]	A	G	1.586e^-4	0.874	UPSTREAM CG15896 INTRON Rpt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	6848243	3R_6848243_INS [dm3] 3R_11022521_INS [dm6]	A	AAC	1.587e^-4	0.874	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	14299698	2L_14299698_SNP [dm3] 2L_14299698_SNP [dm6]	C	T	1.602e^-4	0.874	INTRON wb
2L	18281508	2L_18281508_SNP [dm3] 2L_18281508_SNP [dm6]	T	C	1.604e^-4	0.874	INTERGENIC
2L	13707344	2L_13707344_SNP [dm3] 2L_13707344_SNP [dm6]	G	A	1.606e^-4	0.874	UPSTREAM CG7311 INTRON CG31814
X	6136125	X_6136125_SNP [dm3] X_6242092_SNP [dm6]	A	C	1.610e^-4	0.874	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	22868327	3R_22868327_SNP [dm3] 3R_27042605_SNP [dm6]	C	T	1.612e^-4	0.874	INTRON RYa-R
2L	7210969	2L_7210969_SNP [dm3] 2L_7210969_SNP [dm6]	C	A	1.615e^-4	0.874	INTRON CG13784
2L	5718199	2L_5718199_SNP [dm3] 2L_5718199_SNP [dm6]	T	C	1.619e^-4	0.874	UTR_3_PRIME CG11149 DOWNSTREAM CG34011
3L	11486237	3L_11486237_SNP [dm3] 3L_11493137_SNP [dm6]	A	T	1.641e^-4	0.874	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1847616	3L_1847616_SNP [dm3] 3L_1847616_SNP [dm6]	A	G	1.641e^-4	0.874	INTERGENIC
X	479320	X_479320_SNP [dm3] X_585287_SNP [dm6]	C	G	1.651e^-4	0.874	INTRON vnd & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19240521	2R_19240521_SNP [dm3] 2R_23352998_SNP [dm6]	T	C	1.664e^-4	0.874	DOWNSTREAM CG34210 INTERGENIC
3R	7128341	3R_7128341_SNP [dm3] 3R_11302619_SNP [dm6]	C	T	1.664e^-4	0.874	INTRON CR31386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	20934679	2L_20934679_SNP [dm3] 2L_20934679_SNP [dm6]	T	A	1.667e^-4	0.874	UPSTREAM CG9270 INTERGENIC
3R	9632546	3R_9632546_SNP [dm3] 3R_13806824_SNP [dm6]	G	C	1.675e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	21758012	3L_21758012_SNP [dm3] 3L_21764912_SNP [dm6]	T	C	1.682e^-4	0.874	INTRON Syn1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
2L	9982684	2L_9982684_DEL [dm3] 2L_9982684_DEL [dm6]	ACTTCTTC	G	1.695e^-4	0.874	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	9982717	2L_9982717_DEL [dm3] 2L_9982717_DEL [dm6]	TCCTTC	T	1.695e^-4	0.874	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	14550370	2L_14550370_SNP [dm3] 2L_14550370_SNP [dm6]	T	C	1.697e^-4	0.874	DOWNSTREAM CR44853 INTERGENIC	TF binding site mE1_TFBS_cad
3L	1582237	3L_1582237_SNP [dm3] 3L_1582237_SNP [dm6]	A	G	1.700e^-4	0.874	INTRON CG13917
2L	11192220	2L_11192220_SNP [dm3] 2L_11192220_SNP [dm6]	C	G	1.710e^-4	0.874	INTRON Ca-beta
3R	8542604	3R_8542604_SNP [dm3] 3R_12716882_SNP [dm6]	A	C	1.713e^-4	0.874	INTRON Men
4	643533	4_643533_SNP [dm3] 4_622907_SNP [dm6]	G	T	1.717e^-4	0.874	DOWNSTREAM mav & 1 other INTERGENIC
2R	7147595	2R_7147595_SNP [dm3] 2R_11260090_SNP [dm6]	G	A	1.721e^-4	0.874	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
3L	12128223	3L_12128223_SNP [dm3] 3L_12135123_SNP [dm6]	A	G	1.729e^-4	0.874	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	145583	3L_145583_SNP [dm3] 3L_145583_SNP [dm6]	C	G	1.735e^-4	0.874	UTR_3_PRIME Pdk1 UPSTREAM CG6845 DOWNSTREAM Pdk1
3R	26404961	3R_26404961_SNP [dm3] 3R_30579239_SNP [dm6]	G	T	1.742e^-4	0.874	UPSTREAM CG9702 DOWNSTREAM tmod INTERGENIC
3R	18982582	3R_18982582_SNP [dm3] 3R_23156860_SNP [dm6]	T	C	1.753e^-4	0.874	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	11486233	3L_11486233_SNP [dm3] 3L_11493133_SNP [dm6]	G	A	1.759e^-4	0.874	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	20031320	3L_20031320_SNP [dm3] 3L_20038220_SNP [dm6]	C	G	1.765e^-4	0.874	INTERGENIC
3L	12336230	3L_12336230_SNP [dm3] 3L_12343130_SNP [dm6]	T	C	1.772e^-4	0.874	INTRON CrzR
2L	12668701	2L_12668701_SNP [dm3] 2L_12668701_SNP [dm6]	G	A	1.789e^-4	0.874	NON_SYNONYMOUS_CODING CG15485 INTRON pdm2
2R	19244050	2R_19244050_SNP [dm3] 2R_23356527_SNP [dm6]	A	G	1.807e^-4	0.874	SYNONYMOUS_CODING CG3500 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	14425345	2L_14425345_SNP [dm3] 2L_14425345_SNP [dm6]	G	C	1.812e^-4	0.874	UPSTREAM Cpr35B INTERGENIC
2L	13492264	2L_13492264_SNP [dm3] 2L_13492264_SNP [dm6]	A	G	1.817e^-4	0.874	INTRON CG42784
3L	13377102	3L_13377102_SNP [dm3] 3L_13384002_SNP [dm6]	A	T	1.818e^-4	0.874	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	13377114	3L_13377114_SNP [dm3] 3L_13384014_SNP [dm6]	T	G	1.818e^-4	0.874	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
X	6782184	X_6782184_SNP [dm3] X_6888151_SNP [dm6]	T	A	1.826e^-4	0.874	INTERGENIC
2R	9452296	2R_9452296_SNP [dm3] 2R_13564791_SNP [dm6]	C	A	1.826e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	17675922	2L_17675922_SNP [dm3] 2L_17675922_SNP [dm6]	A	T	1.827e^-4	0.874	INTRON CadN
2L	9303615	2L_9303615_SNP [dm3] 2L_9303615_SNP [dm6]	C	T	1.829e^-4	0.874	DOWNSTREAM CR42844 INTERGENIC
2R	16972214	2R_16972214_SNP [dm3] 2R_21084709_SNP [dm6]	C	T	1.838e^-4	0.874	INTRON Treh	TF binding site mE1_TFBS_cad
2L	15139041	2L_15139041_DEL [dm3] 2L_15139041_DEL [dm6]	AAGTAGAATAAAGTGTC...	A	1.839e^-4	0.874	INTERGENIC
2L	20934688	2L_20934688_SNP [dm3] 2L_20934688_SNP [dm6]	T	C	1.843e^-4	0.874	UPSTREAM CG9270 INTERGENIC
3L	15363545	3L_15363545_SNP [dm3] 3L_15370445_SNP [dm6]	A	C	1.843e^-4	0.874	INTERGENIC
2R	11839119	2R_11839119_SNP [dm3] 2R_15951614_SNP [dm6]	A	G	1.846e^-4	0.874	UPSTREAM Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck
3R	9362935	3R_9362935_SNP [dm3] 3R_13537213_SNP [dm6]	G	C	1.850e^-4	0.874	INTERGENIC
2R	15120389	2R_15120389_SNP [dm3] 2R_19232884_SNP [dm6]	A	T	1.854e^-4	0.874	INTRON cora	TF binding site mE1_TFBS_HSA
3R	10664770	3R_10664770_SNP [dm3] 3R_14839048_SNP [dm6]	C	T	1.854e^-4	0.874	INTRON btsz
3L	2359671	3L_2359671_SNP [dm3] 3L_2359671_SNP [dm6]	C	A	1.860e^-4	0.874	UPSTREAM CG13801 INTERGENIC
2L	12312463	2L_12312463_SNP [dm3] 2L_12312463_SNP [dm6]	G	A	1.867e^-4	0.874	SPLICE_SITE_REGION aret UTR_3_PRIME aret DOWNSTREAM aret
2L	12458074	2L_12458074_SNP [dm3] 2L_12458074_SNP [dm6]	C	T	1.870e^-4	0.874	SYNONYMOUS_CODING bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16492368	3L_16492368_SNP [dm3] 3L_16499268_SNP [dm6]	G	A	1.871e^-4	0.874	SYNONYMOUS_CODING st INTRON CG43373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5027231	X_5027231_DEL [dm3] X_5133198_DEL [dm6]	TA	G	1.872e^-4	0.874	DOWNSTREAM Rpn13R INTRON rg & 1 other
3R	20925631	3R_20925631_SNP [dm3] 3R_25099909_SNP [dm6]	T	C	1.876e^-4	0.874	DOWNSTREAM CG33096 INTRON CG33095 & 1 other
2R	14233946	2R_14233946_DEL [dm3] 2R_18346441_DEL [dm6]	AA	A	1.885e^-4	0.874	INTRON sbb	TF binding site mE1_TFBS_inv
3L	13377105	3L_13377105_SNP [dm3] 3L_13384005_SNP [dm6]	C	A	1.891e^-4	0.874	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3R	13370957	3R_13370957_INS [dm3] 3R_17545235_INS [dm6]	T	TCTAACATACAAAAAT...	1.892e^-4	0.874	UTR_3_PRIME Prx3 DOWNSTREAM SF1
2L	15139064	2L_15139064_DEL [dm3] 2L_15139064_DEL [dm6]	TTACGAAAA	C	1.898e^-4	0.874	INTERGENIC
2R	12474580	2R_12474580_SNP [dm3] 2R_16587075_SNP [dm6]	T	G	1.909e^-4	0.874	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
3L	3895083	3L_3895083_SNP [dm3] 3L_3895083_SNP [dm6]	T	C	1.913e^-4	0.874	SYNONYMOUS_CODING Gr63a DOWNSTREAM Fie
3L	17147112	3L_17147112_SNP [dm3] 3L_17154012_SNP [dm6]	A	T	1.932e^-4	0.874	INTRON Rbp6
3R	10136163	3R_10136163_SNP [dm3] 3R_14310441_SNP [dm6]	C	T	1.933e^-4	0.874	UTR_5_PRIME CG31321 DOWNSTREAM RpII15
X	16933501	X_16933501_INS [dm3] X_17039468_INS [dm6]	A	ACAATGGGTAATAAA...	1.933e^-4	0.874	INTRON CG45002
2L	15139061	2L_15139061_SNP [dm3] 2L_15139061_SNP [dm6]	T	A	1.940e^-4	0.874	INTERGENIC
3R	17110186	3R_17110186_SNP [dm3] 3R_21284464_SNP [dm6]	C	A	1.949e^-4	0.874	DOWNSTREAM CG17298 INTRON SIFaR
3L	6079953	3L_6079953_SNP [dm3] 3L_6086853_SNP [dm6]	T	C	1.950e^-4	0.874	INTRON CG13293
2R	18382972	2R_18382972_SNP [dm3] 2R_22495467_SNP [dm6]	T	C	1.952e^-4	0.874	UTR_3_PRIME px
3R	7131556	3R_7131556_SNP [dm3] 3R_11305834_SNP [dm6]	A	G	1.964e^-4	0.874	UPSTREAM CR31386 INTERGENIC
3R	10149369	3R_10149369_SNP [dm3] 3R_14323647_SNP [dm6]	G	A	1.967e^-4	0.874	INTRON Afti
2L	13941595	2L_13941595_SNP [dm3] 2L_13941595_SNP [dm6]	T	C	1.978e^-4	0.874	INTRON Ance-3
3R	17182027	3R_17182027_SNP [dm3] 3R_21356305_SNP [dm6]	C	A	1.980e^-4	0.874	START_GAINED pre-mod_mdg4_-B UTR_5_PRIME pre-mod_mdg4_-B UTR_3_PRIME pre-mod_mdg4_-I & 3 others DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 1 other
2R	19237762	2R_19237762_SNP [dm3] 2R_23350239_SNP [dm6]	T	A	1.984e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19457512	2L_19457512_SNP [dm3] 2L_19457512_SNP [dm6]	C	T	1.991e^-4	0.874	SYNONYMOUS_CODING CG10026	TF binding site BDTNP1_TFBS_dl
3R	6849769	3R_6849769_SNP [dm3] 3R_11024047_SNP [dm6]	A	T	1.995e^-4	0.874	INTRON CG34114
2L	496329	2L_496329_SNP [dm3] 2L_496329_SNP [dm6]	G	A	1.999e^-4	0.874	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	6584763	2R_6584763_SNP [dm3] 2R_10697258_SNP [dm6]	G	A	2.018e^-4	0.874	INTRON stan
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	2.024e^-4	0.874	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	9982705	2L_9982705_SNP [dm3] 2L_9982705_SNP [dm6]	T	G	2.025e^-4	0.874	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2R	12358981	2R_12358981_SNP [dm3] 2R_16471476_SNP [dm6]	T	C	2.042e^-4	0.874	INTERGENIC
2L	14001547	2L_14001547_SNP [dm3] 2L_14001547_SNP [dm6]	G	A	2.043e^-4	0.874	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	7127826	3R_7127826_SNP [dm3] 3R_11302104_SNP [dm6]	G	T	2.048e^-4	0.874	INTRON CR31386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8504639	2L_8504639_DEL [dm3] 2L_8504639_DEL [dm6]	TACCGTCTGCATCTCCT...	T	2.048e^-4	0.874	INTRON Dh31
3R	19777401	3R_19777401_SNP [dm3] 3R_23951679_SNP [dm6]	C	T	2.063e^-4	0.874	DOWNSTREAM Aats-glupro INTERGENIC
2R	17066226	2R_17066226_SNP [dm3] 2R_21178721_SNP [dm6]	C	T	2.066e^-4	0.874	UPSTREAM Pu & 1 other INTRON Pu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16979014	3L_16979014_SNP [dm3] 3L_16985914_SNP [dm6]	G	A	2.069e^-4	0.874	UPSTREAM Exn INTRON Exn	TF binding site mE1_TFBS_bab1 mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	22868373	3R_22868373_SNP [dm3] 3R_27042651_SNP [dm6]	G	A	2.072e^-4	0.874	INTRON RYa-R
3R	10138971	3R_10138971_SNP [dm3] 3R_14313249_SNP [dm6]	G	A	2.073e^-4	0.874	SYNONYMOUS_CODING CG31321
3L	13377110	3L_13377110_SNP [dm3] 3L_13384010_SNP [dm6]	T	A	2.078e^-4	0.874	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
X	12013152	X_12013152_SNP [dm3] X_12119119_SNP [dm6]	A	G	2.084e^-4	0.874	INTRON Ten-a
2R	5718950	2R_5718950_SNP [dm3] 2R_9831445_SNP [dm6]	T	A	2.090e^-4	0.874	UPSTREAM hebe INTRON hebe
3L	11486384	3L_11486384_SNP [dm3] 3L_11493284_SNP [dm6]	T	C	2.100e^-4	0.874	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	21645724	3L_21645724_SNP [dm3] 3L_21652624_SNP [dm6]	G	A	2.101e^-4	0.874	INTRON CG43980	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	18927775	X_18927775_SNP [dm3] X_19033742_SNP [dm6]	T	A	2.111e^-4	0.874	INTERGENIC
2R	12093270	2R_12093270_SNP [dm3] 2R_16205765_SNP [dm6]	A	T	2.119e^-4	0.874	NON_SYNONYMOUS_CODING mrj UPSTREAM mrj	TF binding site mE1_TFBS_sens
3L	11484548	3L_11484548_INS [dm3] 3L_11491448_INS [dm6]	T	TCT	2.119e^-4	0.874	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12474609	2R_12474609_SNP [dm3] 2R_16587104_SNP [dm6]	T	C	2.123e^-4	0.874	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
2L	15139099	2L_15139099_SNP [dm3] 2L_15139099_SNP [dm6]	A	C	2.127e^-4	0.874	INTERGENIC
2L	15139105	2L_15139105_MNP [dm3] 2L_15139105_MNP [dm6]	GTA	TCC	2.127e^-4	0.874	INTERGENIC
3L	11730852	3L_11730852_SNP [dm3] 3L_11737752_SNP [dm6]	A	G	2.129e^-4	0.874	INTRON CG6024
2R	12615324	2R_12615324_SNP [dm3] 2R_16727819_SNP [dm6]	A	G	2.129e^-4	0.874	INTRON CG30463
3L	13426736	3L_13426736_SNP [dm3] 3L_13433636_SNP [dm6]	T	G	2.131e^-4	0.874	DOWNSTREAM tRNA:V4:70BCa & 1 other INTRON CG10713
2L	14426306	2L_14426306_SNP [dm3] 2L_14426306_SNP [dm6]	G	T	2.132e^-4	0.874	INTERGENIC
3R	7810180	3R_7810180_SNP [dm3] 3R_11984458_SNP [dm6]	C	T	2.133e^-4	0.874	SYNONYMOUS_CODING CG3397 DOWNSTREAM mfas	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1592444	3L_1592444_SNP [dm3] 3L_1592444_SNP [dm6]	A	C	2.134e^-4	0.874	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	14400256	2L_14400256_SNP [dm3] 2L_14400256_SNP [dm6]	A	T	2.134e^-4	0.874	INTRON elB
3R	14905159	3R_14905159_SNP [dm3] 3R_19079437_SNP [dm6]	G	T	2.138e^-4	0.874	INTRON cdi
3R	6572388	3R_6572388_SNP [dm3] 3R_10746666_SNP [dm6]	C	T	2.142e^-4	0.874	INTRON TkR86C
3L	1906465	3L_1906465_SNP [dm3] 3L_1906465_SNP [dm6]	T	A	2.152e^-4	0.874	INTRON CG1887
2L	9960003	2L_9960003_SNP [dm3] 2L_9960003_SNP [dm6]	T	A	2.154e^-4	0.874	UTR_3_PRIME CG5850 & 1 other DOWNSTREAM CG4658 & 1 other EXON CR44872
3R	25857715	3R_25857715_SNP [dm3] 3R_30031993_SNP [dm6]	C	T	2.155e^-4	0.874	SYNONYMOUS_CODING Axn UTR_3_PRIME Axn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18983641	3R_18983641_DEL [dm3] 3R_23157919_DEL [dm6]	TG	T	2.165e^-4	0.874	UPSTREAM unk DOWNSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20997360	3R_20997360_SNP [dm3] 3R_25171638_SNP [dm6]	G	A	2.181e^-4	0.874	SYNONYMOUS_CODING lobo	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3446255	X_3446255_SNP [dm3] X_3552222_SNP [dm6]	C	T	2.183e^-4	0.874	INTRON CG32791
3L	4478410	3L_4478410_SNP [dm3] 3L_4478410_SNP [dm6]	A	T	2.187e^-4	0.874	INTERGENIC
3R	25396056	3R_25396056_SNP [dm3] 3R_29570334_SNP [dm6]	G	T	2.188e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	7796214	3R_7796214_SNP [dm3] 3R_11970492_SNP [dm6]	A	G	2.190e^-4	0.874	SYNONYMOUS_CODING GC1
3R	6837749	3R_6837749_SNP [dm3] 3R_11012027_SNP [dm6]	G	C	2.194e^-4	0.874	SYNONYMOUS_CODING CG34114
3R	17942048	3R_17942048_SNP [dm3] 3R_22116326_SNP [dm6]	C	T	2.219e^-4	0.874	SYNONYMOUS_CODING Ir94b
3L	5610243	3L_5610243_SNP [dm3] 3L_5617143_SNP [dm6]	C	T	2.220e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14829284	3R_14829284_SNP [dm3] 3R_19003562_SNP [dm6]	T	C	2.223e^-4	0.874	INTRON gukh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20383491	3R_20383491_SNP [dm3] 3R_24557769_SNP [dm6]	T	G	2.225e^-4	0.874	UTR_3_PRIME CG13624 DOWNSTREAM snRNA:U6:96Ab & 1 other
2R	18696731	2R_18696731_SNP [dm3] 2R_22809226_SNP [dm6]	T	A	2.228e^-4	0.874	INTRON stl	TF binding site BDTNP1_TFBS_twi
X	5608660	X_5608660_SNP [dm3] X_5714627_SNP [dm6]	G	T	2.234e^-4	0.874	INTRON CG33080
2L	15117741	2L_15117741_SNP [dm3] 2L_15117741_SNP [dm6]	A	G	2.248e^-4	0.874	UTR_3_PRIME stc
3L	3803010	3L_3803010_SNP [dm3] 3L_3803010_SNP [dm6]	G	A	2.249e^-4	0.874	DOWNSTREAM ntc INTRON CG32264
3R	15070382	3R_15070382_SNP [dm3] 3R_19244660_SNP [dm6]	A	C	2.249e^-4	0.874	INTRON unc79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5652191	3L_5652191_INS [dm3] 3L_5659091_INS [dm6]	A	AAAAA	2.253e^-4	0.874	DOWNSTREAM Sse INTRON sif
3R	9999606	3R_9999606_SNP [dm3] 3R_14173884_SNP [dm6]	G	A	2.255e^-4	0.874	UTR_3_PRIME Dop1R1
3L	12128391	3L_12128391_SNP [dm3] 3L_12135291_SNP [dm6]	A	G	2.256e^-4	0.874	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10632398	2R_10632398_SNP [dm3] 2R_14744893_SNP [dm6]	C	T	2.256e^-4	0.874	INTRON CG12858
2R	7105897	2R_7105897_SNP [dm3] 2R_11218392_SNP [dm6]	A	G	2.257e^-4	0.874	DOWNSTREAM shn INTRON CG9084
2R	10998554	2R_10998554_INS [dm3] 2R_15111049_INS [dm6]	A	ACCATAAGAACCACTAATGG...	2.264e^-4	0.874	INTERGENIC
2R	7070036	2R_7070036_SNP [dm3] 2R_11182531_SNP [dm6]	G	C	2.273e^-4	0.874	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	1956565	3R_1956565_SNP [dm3] 3R_6130843_SNP [dm6]	T	A	2.282e^-4	0.874	INTERGENIC
2L	11012271	2L_11012271_SNP [dm3] 2L_11012271_SNP [dm6]	T	G	2.293e^-4	0.874	DOWNSTREAM dUTPase & 1 other INTERGENIC
3R	8548244	3R_8548244_SNP [dm3] 3R_12722522_SNP [dm6]	G	C	2.298e^-4	0.874	UPSTREAM Men INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16933505	X_16933505_SNP [dm3] X_17039472_SNP [dm6]	C	T	2.303e^-4	0.874	INTRON CG45002
X	12362934	X_12362934_SNP [dm3] X_12468901_SNP [dm6]	G	A	2.305e^-4	0.874	INTRON CG42258	TF binding site mE1_TFBS_HSA
2R	4743620	2R_4743620_INS [dm3] 2R_8856115_INS [dm6]	G	GG	2.307e^-4	0.874	DOWNSTREAM sns INTERGENIC
3L	6895795	3L_6895795_SNP [dm3] 3L_6902695_SNP [dm6]	G	A	2.311e^-4	0.874	INTERGENIC
3R	12289151	3R_12289151_SNP [dm3] 3R_16463429_SNP [dm6]	C	G	2.313e^-4	0.874	SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7140031	3R_7140031_SNP [dm3] 3R_11314309_SNP [dm6]	T	A	2.315e^-4	0.874	INTERGENIC
X	14874435	X_14874435_DEL [dm3] X_14980402_DEL [dm6]	AA	A	2.319e^-4	0.874	INTRON eag
2L	12458059	2L_12458059_SNP [dm3] 2L_12458059_SNP [dm6]	T	A	2.319e^-4	0.874	SYNONYMOUS_CODING bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9928353	3R_9928353_SNP [dm3] 3R_14102631_SNP [dm6]	G	C	2.327e^-4	0.874	SYNONYMOUS_CODING PK1-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	797455	3R_797455_INS [dm3] 3R_4971733_INS [dm6]	T	TT	2.328e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe
3R	7740692	3R_7740692_SNP [dm3] 3R_11914970_SNP [dm6]	A	T	2.333e^-4	0.874	INTRON Cad87A
2R	3563066	2R_3563066_SNP [dm3] 2R_7675561_SNP [dm6]	C	T	2.336e^-4	0.874	SYNONYMOUS_CODING U2A DOWNSTREAM CG12107 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7131675	3R_7131675_DEL [dm3] 3R_11305953_DEL [dm6]	AG	A	2.339e^-4	0.874	UPSTREAM CR31386 INTERGENIC
3R	18982520	3R_18982520_SNP [dm3] 3R_23156798_SNP [dm6]	A	G	2.347e^-4	0.874	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	6411217	2R_6411217_SNP [dm3] 2R_10523712_SNP [dm6]	A	G	2.348e^-4	0.874	UTR_3_PRIME lola INTRON lola	TF binding site BDTNP1_TFBS_dl
3R	19442365	3R_19442365_SNP [dm3] 3R_23616643_SNP [dm6]	A	G	2.351e^-4	0.874	INTRON CG31145
3R	19442386	3R_19442386_SNP [dm3] 3R_23616664_SNP [dm6]	G	C	2.351e^-4	0.874	INTRON CG31145
2L	19443134	2L_19443134_SNP [dm3] 2L_19443134_SNP [dm6]	A	C	2.367e^-4	0.874	UTR_3_PRIME Hs2st UPSTREAM CG10237 INTRON RanGAP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5625668	3L_5625668_SNP [dm3] 3L_5632568_SNP [dm6]	A	G	2.375e^-4	0.874	INTRON Blimp-1
2L	6020281	2L_6020281_SNP [dm3] 2L_6020281_SNP [dm6]	A	G	2.375e^-4	0.874	UPSTREAM H2.0 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7114083	3R_7114083_SNP [dm3] 3R_11288361_SNP [dm6]	C	G	2.381e^-4	0.874	INTRON CR31386
3L	6957914	3L_6957914_SNP [dm3] 3L_6964814_SNP [dm6]	C	G	2.390e^-4	0.874	UPSTREAM sgl DOWNSTREAM CG10064 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7270416	2L_7270416_SNP [dm3] 2L_7270416_SNP [dm6]	C	T	2.398e^-4	0.874	INTRON Wnt4
3R	14945561	3R_14945561_SNP [dm3] 3R_19119839_SNP [dm6]	G	T	2.399e^-4	0.874	INTRON CG6040
2L	8334614	2L_8334614_SNP [dm3] 2L_8334614_SNP [dm6]	G	C	2.402e^-4	0.874	INTERGENIC
3R	17279197	3R_17279197_SNP [dm3] 3R_21453475_SNP [dm6]	T	C	2.405e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	20195319	2R_20195319_SNP [dm3] 2R_24307796_SNP [dm6]	A	T	2.406e^-4	0.874	INTRON betaTub60D	regulatory region REDfly_CRMs
2R	16972445	2R_16972445_SNP [dm3] 2R_21084940_SNP [dm6]	C	A	2.409e^-4	0.874	INTRON Treh	TF binding site mE1_TFBS_cad
3L	1332112	3L_1332112_SNP [dm3] 3L_1332112_SNP [dm6]	C	T	2.410e^-4	0.874	SYNONYMOUS_CODING msd1 DOWNSTREAM msd5 & 1 other
3L	11976746	3L_11976746_SNP [dm3] 3L_11983646_SNP [dm6]	G	A	2.417e^-4	0.874	UTR_3_PRIME CG43896 DOWNSTREAM CG43896	TF binding site mE1_TFBS_chinmo
3L	11730831	3L_11730831_SNP [dm3] 3L_11737731_SNP [dm6]	A	G	2.423e^-4	0.874	INTRON CG6024
2L	14001545	2L_14001545_SNP [dm3] 2L_14001545_SNP [dm6]	G	A	2.432e^-4	0.874	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	8867031	3L_8867031_SNP [dm3] 3L_8873931_SNP [dm6]	T	G	2.436e^-4	0.874	INTRON dally
2L	19326852	2L_19326852_SNP [dm3] 2L_19326852_SNP [dm6]	C	T	2.438e^-4	0.874	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	13560078	2L_13560078_INS [dm3] 2L_13560078_INS [dm6]	C	CT	2.440e^-4	0.874	INTRON kuz
3L	11589286	3L_11589286_SNP [dm3] 3L_11596186_SNP [dm6]	G	T	2.441e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12146252	2L_12146252_SNP [dm3] 2L_12146252_SNP [dm6]	G	A	2.444e^-4	0.874	INTRON CG31760
3L	1249229	3L_1249229_SNP [dm3] 3L_1249229_SNP [dm6]	A	G	2.448e^-4	0.874	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	5642321	3L_5642321_SNP [dm3] 3L_5649221_SNP [dm6]	T	A	2.451e^-4	0.874	UTR_3_PRIME Blimp-1 DOWNSTREAM Blimp-1
2L	8140685	2L_8140685_SNP [dm3] 2L_8140685_SNP [dm6]	G	A	2.451e^-4	0.874	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552 DOWNSTREAM mir-4984	TF binding site mE1_TFBS_cad
2L	8932713	2L_8932713_SNP [dm3] 2L_8932713_SNP [dm6]	G	A	2.461e^-4	0.874	DOWNSTREAM CG34398 INTRON CG34398
X	19015286	X_19015286_SNP [dm3] X_19121253_SNP [dm6]	T	C	2.467e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5471576	2L_5471576_SNP [dm3] 2L_5471576_SNP [dm6]	G	A	2.470e^-4	0.874	INTERGENIC
2L	11382927	2L_11382927_SNP [dm3] 2L_11382927_SNP [dm6]	T	A	2.471e^-4	0.874	INTERGENIC	regulatory region REDfly_CRMs
3R	22829028	3R_22829028_SNP [dm3] 3R_27003306_SNP [dm6]	G	A	2.473e^-4	0.874	UTR_3_PRIME CG6296 DOWNSTREAM CG31077 INTRON RYa-R
3L	6449202	3L_6449202_SNP [dm3] 3L_6456102_SNP [dm6]	T	C	2.474e^-4	0.874	INTRON CG42747
X	6099314	X_6099314_SNP [dm3] X_6205281_SNP [dm6]	A	T	2.475e^-4	0.874	INTERGENIC
2L	15635096	2L_15635096_SNP [dm3] 2L_15635096_SNP [dm6]	A	G	2.476e^-4	0.874	DOWNSTREAM CG18480 INTERGENIC
2R	13547147	2R_13547147_SNP [dm3] 2R_17659642_SNP [dm6]	T	A	2.477e^-4	0.874	INTRON CCHa1-R
2L	9982648	2L_9982648_SNP [dm3] 2L_9982648_SNP [dm6]	A	G	2.484e^-4	0.874	INTERGENIC	regulatory region REDfly_CRMs
2R	16974567	2R_16974567_SNP [dm3] 2R_21087062_SNP [dm6]	T	C	2.498e^-4	0.874	UTR_3_PRIME Treh	TF binding site mE1_TFBS_cad
3L	1596009	3L_1596009_SNP [dm3] 3L_1596009_SNP [dm6]	C	T	2.503e^-4	0.874	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22842890	3L_22842890_SNP [dm3] 3L_22849790_SNP [dm6]	A	G	2.507e^-4	0.874	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17279360	3R_17279360_SNP [dm3] 3R_21453638_SNP [dm6]	C	T	2.514e^-4	0.874	INTERGENIC
2L	13492340	2L_13492340_SNP [dm3] 2L_13492340_SNP [dm6]	C	T	2.525e^-4	0.874	INTRON CG42784
3L	3895062	3L_3895062_SNP [dm3] 3L_3895062_SNP [dm6]	G	A	2.527e^-4	0.874	SYNONYMOUS_CODING Gr63a DOWNSTREAM Fie
2R	16523708	2R_16523708_SNP [dm3] 2R_20636203_SNP [dm6]	T	G	2.535e^-4	0.874	UPSTREAM CG13436 INTRON rig
2R	16523709	2R_16523709_SNP [dm3] 2R_20636204_SNP [dm6]	T	C	2.535e^-4	0.874	UPSTREAM CG13436 INTRON rig
2L	11192942	2L_11192942_SNP [dm3] 2L_11192942_SNP [dm6]	A	G	2.559e^-4	0.874	INTRON Ca-beta
2L	3698775	2L_3698775_SNP [dm3] 2L_3698775_SNP [dm6]	G	T	2.562e^-4	0.874	UPSTREAM CG3604 & 1 other INTRON CG10031
X	14419812	X_14419812_SNP [dm3] X_14525779_SNP [dm6]	T	C	2.565e^-4	0.874	INTERGENIC
2R	7070095	2R_7070095_SNP [dm3] 2R_11182590_SNP [dm6]	A	G	2.567e^-4	0.874	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	2.584e^-4	0.874	INTRON unc-5
2R	7070027	2R_7070027_SNP [dm3] 2R_11182522_SNP [dm6]	T	G	2.587e^-4	0.874	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10663714	3R_10663714_SNP [dm3] 3R_14837992_SNP [dm6]	G	A	2.589e^-4	0.874	INTRON btsz
3R	8888492	3R_8888492_SNP [dm3] 3R_13062770_SNP [dm6]	G	A	2.598e^-4	0.874	INTRON sim
2L	12260860	2L_12260860_SNP [dm3] 2L_12260860_SNP [dm6]	G	A	2.610e^-4	0.874	INTRON aret
2R	12712526	2R_12712526_SNP [dm3] 2R_16825021_SNP [dm6]	C	G	2.610e^-4	0.874	UPSTREAM CG34459 INTRON CG34459
2R	19927923	2R_19927923_SNP [dm3] 2R_24040400_SNP [dm6]	G	T	2.613e^-4	0.874	NON_SYNONYMOUS_CODING IntS1
2R	9456034	2R_9456034_SNP [dm3] 2R_13568529_SNP [dm6]	A	G	2.624e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3L	18062257	3L_18062257_SNP [dm3] 3L_18069157_SNP [dm6]	T	C	2.631e^-4	0.874	NON_SYNONYMOUS_CODING CG44006
2L	14001536	2L_14001536_SNP [dm3] 2L_14001536_SNP [dm6]	G	C	2.632e^-4	0.874	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	19441252	2L_19441252_SNP [dm3] 2L_19441252_SNP [dm6]	A	G	2.637e^-4	0.874	UTR_5_PRIME CG10237 UPSTREAM CG10237 & 1 other	TF binding site BDTNP1_TFBS_dl
X	14548085	X_14548085_SNP [dm3] X_14654052_SNP [dm6]	T	A	2.638e^-4	0.874	UPSTREAM NetA INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	14873323	X_14873323_SNP [dm3] X_14979290_SNP [dm6]	C	A	2.639e^-4	0.874	INTRON eag
3L	14227894	3L_14227894_SNP [dm3] 3L_14234794_SNP [dm6]	C	T	2.648e^-4	0.874	DOWNSTREAM CG34244 & 1 other INTERGENIC
2L	11940744	2L_11940744_SNP [dm3] 2L_11940744_SNP [dm6]	C	A	2.649e^-4	0.874	INTERGENIC
3L	11852208	3L_11852208_SNP [dm3] 3L_11859108_SNP [dm6]	G	T	2.661e^-4	0.874	INTRON CG44837
2L	4426135	2L_4426135_DEL [dm3] 2L_4426135_DEL [dm6]	ATAGCCCATTTACA...	A	2.665e^-4	0.874	INTRON CG15431
3L	5706229	3L_5706229_SNP [dm3] 3L_5713129_SNP [dm6]	A	T	2.667e^-4	0.874	UPSTREAM CG44521 INTRON sif
2R	16344071	2R_16344071_SNP [dm3] 2R_20456566_SNP [dm6]	A	C	2.670e^-4	0.874	INTRON CG12484	TF binding site mE1_TFBS_inv
2R	6337525	2R_6337525_SNP [dm3] 2R_10450020_SNP [dm6]	C	T	2.672e^-4	0.874	INTRON Galphao & 1 other
3L	11486181	3L_11486181_SNP [dm3] 3L_11493081_SNP [dm6]	G	T	2.673e^-4	0.874	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6136376	X_6136376_SNP [dm3] X_6242343_SNP [dm6]	T	C	2.674e^-4	0.874	INTRON Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	8290987	2L_8290987_SNP [dm3] 2L_8290987_SNP [dm6]	G	T	2.687e^-4	0.874	DOWNSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_twi
X	8129911	X_8129911_SNP [dm3] X_8235878_SNP [dm6]	C	G	2.691e^-4	0.874	SPLICE_SITE_REGION sdt INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14208357	3L_14208357_SNP [dm3] 3L_14215257_SNP [dm6]	G	A	2.701e^-4	0.874	INTRON nuf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6857725	3R_6857725_SNP [dm3] 3R_11032003_SNP [dm6]	A	G	2.708e^-4	0.874	INTRON CG34114
3R	19258765	3R_19258765_SNP [dm3] 3R_23433043_SNP [dm6]	A	G	2.713e^-4	0.874	INTRON CG4374
2L	12592861	2L_12592861_SNP [dm3] 2L_12592861_SNP [dm6]	A	G	2.716e^-4	0.874	INTRON nub
3L	15363442	3L_15363442_SNP [dm3] 3L_15370342_SNP [dm6]	A	T	2.716e^-4	0.874	INTERGENIC
2L	21128575	2L_21128575_SNP [dm3] 2L_21128575_SNP [dm6]	T	C	2.722e^-4	0.874	INTRON Nhe2
3R	20777474	3R_20777474_SNP [dm3] 3R_24951752_SNP [dm6]	T	A	2.724e^-4	0.874	INTERGENIC
2L	3990793	2L_3990793_SNP [dm3] 2L_3990793_SNP [dm6]	C	A	2.733e^-4	0.874	INTRON fred
2L	15199800	2L_15199800_SNP [dm3] 2L_15199800_SNP [dm6]	A	G	2.734e^-4	0.874	INTRON CG4168
X	358595	X_358595_SNP [dm3] X_464562_SNP [dm6]	G	T	2.734e^-4	0.874	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12818273	2R_12818273_SNP [dm3] 2R_16930768_SNP [dm6]	C	A	2.741e^-4	0.874	INTRON Pkc53E
2R	19241332	2R_19241332_SNP [dm3] 2R_23353809_SNP [dm6]	C	T	2.746e^-4	0.874	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3754671	3L_3754671_DEL [dm3] 3L_3754671_DEL [dm6]	TCAT	T	2.748e^-4	0.874	CODON_DELETION ppk27 INTRON CG32264
2R	12615170	2R_12615170_SNP [dm3] 2R_16727665_SNP [dm6]	A	G	2.750e^-4	0.874	INTRON CG30463	TF binding site mE1_TFBS_inv
2R	6584766	2R_6584766_SNP [dm3] 2R_10697261_SNP [dm6]	C	G	2.756e^-4	0.874	INTRON stan
3L	18546317	3L_18546317_SNP [dm3] 3L_18553217_SNP [dm6]	G	A	2.761e^-4	0.874	INTERGENIC
3R	8494403	3R_8494403_SNP [dm3] 3R_12668681_SNP [dm6]	G	T	2.769e^-4	0.874	UTR_5_PRIME CG14395
3L	1851978	3L_1851978_SNP [dm3] 3L_1851978_SNP [dm6]	A	G	2.770e^-4	0.874	SPLICE_SITE_REGION CG13936 INTRON CG13936	TF binding site mE1_TFBS_cad
2R	11250864	2R_11250864_SNP [dm3] 2R_15363359_SNP [dm6]	A	G	2.770e^-4	0.874	INTRON unc-5
X	19429619	X_19429619_SNP [dm3] X_19535586_SNP [dm6]	T	C	2.771e^-4	0.874	INTRON CG32532
2R	6411216	2R_6411216_SNP [dm3] 2R_10523711_SNP [dm6]	A	G	2.776e^-4	0.874	UTR_3_PRIME lola INTRON lola	TF binding site BDTNP1_TFBS_dl
X	17852210	X_17852210_SNP [dm3] X_17958177_SNP [dm6]	C	T	2.778e^-4	0.874	INTRON Sh
2R	19237668	2R_19237668_DEL [dm3] 2R_23350145_DEL [dm6]	GGCTTTGCCATTCCGG...	G	2.778e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12813204	2R_12813204_SNP [dm3] 2R_16925699_SNP [dm6]	T	C	2.783e^-4	0.874	UTR_5_PRIME Pkc53E INTRON Pkc53E	TF binding site mE1_TFBS_HSA
3R	15005788	3R_15005788_SNP [dm3] 3R_19180066_SNP [dm6]	G	A	2.794e^-4	0.874	SPLICE_SITE_REGION CG5555 UPSTREAM CG31475 INTRON CG5555	TF binding site BDTNP1_TFBS_dl
2L	8218561	2L_8218561_SNP [dm3] 2L_8218561_SNP [dm6]	C	T	2.801e^-4	0.874	UPSTREAM CG8292 INTRON Snx6
2L	14163496	2L_14163496_SNP [dm3] 2L_14163496_SNP [dm6]	C	G	2.806e^-4	0.874	UPSTREAM CG43332 DOWNSTREAM CG43333 INTERGENIC
3R	2774350	3R_2774350_SNP [dm3] 3R_6948628_SNP [dm6]	G	A	2.823e^-4	0.874	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	6099338	X_6099338_SNP [dm3] X_6205305_SNP [dm6]	A	C	2.828e^-4	0.874	INTERGENIC
X	14874820	X_14874820_SNP [dm3] X_14980787_SNP [dm6]	A	G	2.834e^-4	0.874	INTRON eag
3L	12710895	3L_12710895_SNP [dm3] 3L_12717795_SNP [dm6]	G	A	2.839e^-4	0.874	INTERGENIC
3R	7106772	3R_7106772_SNP [dm3] 3R_11281050_SNP [dm6]	A	G	2.847e^-4	0.874	INTRON CR31386
2L	15854798	2L_15854798_SNP [dm3] 2L_15854798_SNP [dm6]	C	T	2.848e^-4	0.874	DOWNSTREAM CG13243 INTRON Tektin-A
2R	6288408	2R_6288408_SNP [dm3] 2R_10400903_SNP [dm6]	A	T	2.854e^-4	0.874	INTRON CG42732
3L	21666769	3L_21666769_SNP [dm3] 3L_21673669_SNP [dm6]	C	T	2.854e^-4	0.874	SYNONYMOUS_CODING CG11249 DOWNSTREAM CG7158	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14437748	2R_14437748_DEL [dm3] 2R_18550243_DEL [dm6]	AA	A	2.861e^-4	0.874	INTERGENIC
3L	3453567	3L_3453567_SNP [dm3] 3L_3453567_SNP [dm6]	A	G	2.865e^-4	0.874	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6845327	3R_6845327_SNP [dm3] 3R_11019605_SNP [dm6]	G	A	2.868e^-4	0.874	INTRON CG34114
3R	9999471	3R_9999471_SNP [dm3] 3R_14173749_SNP [dm6]	G	T	2.881e^-4	0.874	UTR_3_PRIME Dop1R1
3L	1254210	3L_1254210_SNP [dm3] 3L_1254210_SNP [dm6]	A	G	2.884e^-4	0.874	UTR_5_PRIME CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo
X	6242537	X_6242537_SNP [dm3] X_6348504_SNP [dm6]	C	T	2.890e^-4	0.874	SYNONYMOUS_CODING CG3847 DOWNSTREAM CG3446	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	9303620	2L_9303620_SNP [dm3] 2L_9303620_SNP [dm6]	G	C	2.902e^-4	0.874	DOWNSTREAM CR42844 INTERGENIC
2L	9982644	2L_9982644_SNP [dm3] 2L_9982644_SNP [dm6]	T	G	2.914e^-4	0.874	INTERGENIC	regulatory region REDfly_CRMs
2L	4976732	2L_4976732_SNP [dm3] 2L_4976732_SNP [dm6]	G	A	2.914e^-4	0.874	UPSTREAM CG3792 INTRON Gmd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_h mE1_TFBS_HSA
3L	14189216	3L_14189216_SNP [dm3] 3L_14196116_SNP [dm6]	C	A	2.924e^-4	0.874	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16908524	X_16908524_SNP [dm3] X_17014491_SNP [dm6]	T	A	2.927e^-4	0.874	INTRON CG45002
2L	15467508	2L_15467508_SNP [dm3] 2L_15467508_SNP [dm6]	A	C	2.928e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10296546	3R_10296546_SNP [dm3] 3R_14470824_SNP [dm6]	A	T	2.929e^-4	0.874	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1340083	3L_1340083_SNP [dm3] 3L_1340083_SNP [dm6]	T	G	2.933e^-4	0.874	SYNONYMOUS_CODING CG2199 DOWNSTREAM l_3_02640	TF binding site mE1_TFBS_HSA
2R	9627974	2R_9627974_SNP [dm3] 2R_13740469_SNP [dm6]	A	G	2.941e^-4	0.874	INTRON fas
3L	6452943	3L_6452943_SNP [dm3] 3L_6459843_SNP [dm6]	T	C	2.941e^-4	0.874	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
3L	16103364	3L_16103364_DEL [dm3] 3L_16110264_DEL [dm6]	CTTTTAAC	C	2.941e^-4	0.874	INTRON Zn72D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19422687	2L_19422687_SNP [dm3] 2L_19422687_SNP [dm6]	A	C	2.952e^-4	0.874	INTRON Pax
3L	16979285	3L_16979285_SNP [dm3] 3L_16986185_SNP [dm6]	C	G	2.954e^-4	0.874	UPSTREAM Exn INTRON Exn	TF binding site mE1_TFBS_bab1 mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	12120427	2R_12120427_SNP [dm3] 2R_16232922_SNP [dm6]	C	T	2.955e^-4	0.874	INTRON CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12199564	2L_12199564_SNP [dm3] 2L_12199564_SNP [dm6]	G	C	2.957e^-4	0.874	INTRON aret
2L	9608997	2L_9608997_SNP [dm3] 2L_9608997_SNP [dm6]	C	A	2.969e^-4	0.874	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11730833	3L_11730833_SNP [dm3] 3L_11737733_SNP [dm6]	G	T	2.978e^-4	0.874	INTRON CG6024
2L	15467543	2L_15467543_SNP [dm3] 2L_15467543_SNP [dm6]	T	A	2.979e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16492515	3L_16492515_SNP [dm3] 3L_16499415_SNP [dm6]	G	A	2.983e^-4	0.874	SYNONYMOUS_CODING st INTRON CG43373	TF binding site mE1_TFBS_cad
2R	18015452	2R_18015452_SNP [dm3] 2R_22127947_SNP [dm6]	A	G	2.988e^-4	0.874	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad
3L	8859811	3L_8859811_SNP [dm3] 3L_8866711_SNP [dm6]	C	G	2.994e^-4	0.874	INTRON dally
2R	16965946	2R_16965946_SNP [dm3] 2R_21078441_SNP [dm6]	C	A	2.999e^-4	0.874	INTRON Treh
3L	2712613	3L_2712613_SNP [dm3] 3L_2712613_SNP [dm6]	A	G	3.000e^-4	0.874	UPSTREAM Fife INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17647441	X_17647441_SNP [dm3] X_17753408_SNP [dm6]	G	A	3.006e^-4	0.874	INTERGENIC
3L	6451348	3L_6451348_SNP [dm3] 3L_6458248_SNP [dm6]	C	A	3.008e^-4	0.874	INTRON CG42747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	9982372	3R_9982372_SNP [dm3] 3R_14156650_SNP [dm6]	C	A	3.008e^-4	0.874	NON_SYNONYMOUS_CODING CG31533 DOWNSTREAM CG31327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18837619	3L_18837619_SNP [dm3] 3L_18844519_SNP [dm6]	G	A	3.008e^-4	0.874	INTRON Indy
2R	10774901	2R_10774901_SNP [dm3] 2R_14887396_SNP [dm6]	G	A	3.015e^-4	0.874	UTR_3_PRIME Cyp6a8 UPSTREAM Cyp6a21
2L	19437195	2L_19437195_SNP [dm3] 2L_19437195_SNP [dm6]	C	A	3.018e^-4	0.874	INTRON CG10237
3R	25398798	3R_25398798_SNP [dm3] 3R_29573076_SNP [dm6]	G	A	3.020e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12064085	2R_12064085_SNP [dm3] 2R_16176580_SNP [dm6]	A	G	3.023e^-4	0.874	NON_SYNONYMOUS_CODING Ptp52F
2L	15093259	2L_15093259_SNP [dm3] 2L_15093259_SNP [dm6]	C	A	3.024e^-4	0.874	INTRON CG15270
X	20407899	X_20407899_SNP [dm3] X_20536872_SNP [dm6]	T	G	3.027e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9982693	2L_9982693_SNP [dm3] 2L_9982693_SNP [dm6]	C	A	3.028e^-4	0.874	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3L	7524448	3L_7524448_SNP [dm3] 3L_7531348_SNP [dm6]	A	G	3.031e^-4	0.874	INTRON lqf
2R	10948340	2R_10948340_SNP [dm3] 2R_15060835_SNP [dm6]	T	A	3.032e^-4	0.874	INTERGENIC
2L	12578447	2L_12578447_SNP [dm3] 2L_12578447_SNP [dm6]	T	A	3.050e^-4	0.874	INTERGENIC
X	16897236	X_16897236_DEL [dm3] X_17003203_DEL [dm6]	ACTCGA	A	3.050e^-4	0.874	INTRON CG45002
2R	15396268	2R_15396268_SNP [dm3] 2R_19508763_SNP [dm6]	A	G	3.054e^-4	0.874	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11922429	2L_11922429_SNP [dm3] 2L_11922429_SNP [dm6]	C	A	3.059e^-4	0.874	INTRON Pde1c
3L	1255963	3L_1255963_SNP [dm3] 3L_1255963_SNP [dm6]	A	G	3.069e^-4	0.874	UTR_3_PRIME CG9130 & 1 other UPSTREAM CG9134
3R	8337236	3R_8337236_SNP [dm3] 3R_12511514_SNP [dm6]	C	T	3.075e^-4	0.874	DOWNSTREAM Octbeta3R & 1 other INTERGENIC
3R	6135425	3R_6135425_SNP [dm3] 3R_10309703_SNP [dm6]	A	G	3.075e^-4	0.874	SPLICE_SITE_REGION CG6293 INTRON CG6293
2L	13492328	2L_13492328_SNP [dm3] 2L_13492328_SNP [dm6]	A	T	3.080e^-4	0.874	INTRON CG42784
X	21301040	X_21301040_SNP [dm3] X_21430013_SNP [dm6]	G	A	3.096e^-4	0.874	UPSTREAM CG10918 INTRON CG42343
2R	12501293	2R_12501293_SNP [dm3] 2R_16613788_SNP [dm6]	C	A	3.099e^-4	0.874	INTRON CG5065
3R	3167435	3R_3167435_SNP [dm3] 3R_7341713_SNP [dm6]	C	A	3.105e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	16972108	2R_16972108_SNP [dm3] 2R_21084603_SNP [dm6]	C	T	3.105e^-4	0.874	SYNONYMOUS_CODING Treh INTRON Treh	TF binding site mE1_TFBS_cad
3R	12289893	3R_12289893_SNP [dm3] 3R_16464171_SNP [dm6]	T	A	3.107e^-4	0.874	NON_SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_sens
3R	17985108	3R_17985108_SNP [dm3] 3R_22159386_SNP [dm6]	A	G	3.108e^-4	0.874	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	9143032	2R_9143032_INS [dm3] 2R_13255527_INS [dm6]	T	TATTT	3.111e^-4	0.874	UPSTREAM CR44343 INTERGENIC
2L	4132068	2L_4132068_SNP [dm3] 2L_4132068_SNP [dm6]	T	G	3.119e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	4642829	3L_4642829_SNP [dm3] 3L_4642829_SNP [dm6]	A	C	3.120e^-4	0.874	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18566288	2L_18566288_SNP [dm3] 2L_18566288_SNP [dm6]	A	G	3.120e^-4	0.874	INTRON Pde11
3L	8651707	3L_8651707_SNP [dm3] 3L_8658607_SNP [dm6]	C	G	3.125e^-4	0.874	INTERGENIC
2L	11480155	2L_11480155_SNP [dm3] 2L_11480155_SNP [dm6]	G	T	3.146e^-4	0.874	INTERGENIC
3L	19414987	3L_19414987_SNP [dm3] 3L_19421887_SNP [dm6]	G	A	3.153e^-4	0.874	DOWNSTREAM CR32205 INTERGENIC
3R	7120985	3R_7120985_SNP [dm3] 3R_11295263_SNP [dm6]	G	A	3.165e^-4	0.874	INTRON CR31386
3L	11486106	3L_11486106_SNP [dm3] 3L_11493006_SNP [dm6]	T	G	3.165e^-4	0.874	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16623481	3L_16623481_DEL [dm3] 3L_16630381_DEL [dm6]	GG	G	3.169e^-4	0.874	INTRON Abl	TF binding site mE1_TFBS_inv
3L	12128368	3L_12128368_SNP [dm3] 3L_12135268_SNP [dm6]	C	T	3.193e^-4	0.874	NON_SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4180427	2L_4180427_SNP [dm3] 2L_4180427_SNP [dm6]	G	C	3.196e^-4	0.874	INTERGENIC
2L	14543771	2L_14543771_DEL [dm3] 2L_14543771_DEL [dm6]	AAAA	A	3.200e^-4	0.874	INTERGENIC
2R	14634291	2R_14634291_SNP [dm3] 2R_18746786_SNP [dm6]	A	G	3.201e^-4	0.874	INTRON Hs3st-A	TF binding site mE1_TFBS_chinmo
3R	20777628	3R_20777628_SNP [dm3] 3R_24951906_SNP [dm6]	A	T	3.210e^-4	0.874	INTERGENIC
2L	15635088	2L_15635088_DEL [dm3] 2L_15635088_DEL [dm6]	AA	A	3.211e^-4	0.874	DOWNSTREAM CG18480 INTERGENIC
2R	6655956	2R_6655956_SNP [dm3] 2R_10768451_SNP [dm6]	T	C	3.217e^-4	0.874	INTRON CG33144
3L	5566949	3L_5566949_SNP [dm3] 3L_5573849_SNP [dm6]	C	A	3.217e^-4	0.874	INTRON Msr-110
3L	14208379	3L_14208379_SNP [dm3] 3L_14215279_SNP [dm6]	C	T	3.225e^-4	0.874	INTRON nuf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9187387	2R_9187387_SNP [dm3] 2R_13299882_SNP [dm6]	A	T	3.226e^-4	0.874	SYNONYMOUS_CODING CG17047
3L	11660403	3L_11660403_SNP [dm3] 3L_11667303_SNP [dm6]	T	C	3.229e^-4	0.874	INTRON CG32085
3L	18061711	3L_18061711_SNP [dm3] 3L_18068611_SNP [dm6]	T	A	3.229e^-4	0.874	DOWNSTREAM CG44006 INTERGENIC
3L	11486247	3L_11486247_SNP [dm3] 3L_11493147_SNP [dm6]	A	C	3.240e^-4	0.874	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10663187	3R_10663187_SNP [dm3] 3R_14837465_SNP [dm6]	G	A	3.241e^-4	0.874	INTRON btsz
2L	12609453	2L_12609453_SNP [dm3] 2L_12609453_SNP [dm6]	G	C	3.242e^-4	0.874	INTRON nub	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25522349	3R_25522349_SNP [dm3] 3R_29696627_SNP [dm6]	T	C	3.243e^-4	0.874	UTR_3_PRIME dmrt99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2537714	2L_2537714_SNP [dm3] 2L_2537714_SNP [dm6]	A	T	3.244e^-4	0.874	INTERGENIC
3L	1255970	3L_1255970_DEL [dm3] 3L_1255970_DEL [dm6]	AG	A	3.254e^-4	0.874	UTR_3_PRIME CG9130 & 1 other UPSTREAM CG9134
2R	3812652	2R_3812652_SNP [dm3] 2R_7925147_SNP [dm6]	A	C	3.254e^-4	0.874	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	6136370	X_6136370_SNP [dm3] X_6242337_SNP [dm6]	A	G	3.257e^-4	0.874	INTRON Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	10867112	2L_10867112_SNP [dm3] 2L_10867112_SNP [dm6]	T	G	3.257e^-4	0.874	INTERGENIC
2R	14139588	2R_14139588_SNP [dm3] 2R_18252083_SNP [dm6]	G	A	3.257e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5694442	3R_5694442_SNP [dm3] 3R_9868720_SNP [dm6]	A	T	3.259e^-4	0.874	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
2L	14001563	2L_14001563_SNP [dm3] 2L_14001563_SNP [dm6]	G	C	3.275e^-4	0.874	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	9303929	2L_9303929_SNP [dm3] 2L_9303929_SNP [dm6]	G	T	3.276e^-4	0.874	DOWNSTREAM CR42844 INTERGENIC
3R	7128459	3R_7128459_SNP [dm3] 3R_11302737_SNP [dm6]	A	G	3.276e^-4	0.874	INTRON CR31386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	6924151	2R_6924151_SNP [dm3] 2R_11036646_SNP [dm6]	C	T	3.278e^-4	0.874	INTRON luna
3L	9507246	3L_9507246_SNP [dm3] 3L_9514146_SNP [dm6]	C	A	3.280e^-4	0.874	UTR_3_PRIME CG33700 UPSTREAM CG33702 & 1 other
3L	3590835	3L_3590835_SNP [dm3] 3L_3590835_SNP [dm6]	T	G	3.285e^-4	0.874	INTRON Eip63E
3L	14562916	3L_14562916_SNP [dm3] 3L_14569816_SNP [dm6]	G	T	3.287e^-4	0.874	INTERGENIC
X	2871601	X_2871601_SNP [dm3] X_2977568_SNP [dm6]	C	A	3.289e^-4	0.874	INTRON kirre
3L	449357	3L_449357_SNP [dm3] 3L_449357_SNP [dm6]	C	T	3.290e^-4	0.874	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7544208	3L_7544208_SNP [dm3] 3L_7551108_SNP [dm6]	T	C	3.295e^-4	0.874	INTERGENIC
3L	11597146	3L_11597146_SNP [dm3] 3L_11604046_SNP [dm6]	G	A	3.299e^-4	0.874	SYNONYMOUS_CODING CG7368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8379789	3R_8379789_SNP [dm3] 3R_12554067_SNP [dm6]	C	T	3.306e^-4	0.874	INTRON Octbeta2R
2R	1076296	2R_1076296_SNP [dm3] 2R_5188791_SNP [dm6]	T	C	3.309e^-4	0.874	INTRON Nipped-A
2L	1436480	2L_1436480_SNP [dm3] 2L_1436480_SNP [dm6]	T	A	3.314e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5393737	2L_5393737_SNP [dm3] 2L_5393737_SNP [dm6]	T	C	3.316e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	263485	2L_263485_SNP [dm3] 2L_263485_SNP [dm6]	A	C	3.316e^-4	0.874	UTR_3_PRIME CG17075 DOWNSTREAM CR44219 INTRON CG3645	TF binding site mE1_TFBS_cad
3L	14208356	3L_14208356_SNP [dm3] 3L_14215256_SNP [dm6]	G	A	3.333e^-4	0.874	INTRON nuf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2636867	2R_2636867_SNP [dm3] 2R_6749362_SNP [dm6]	C	G	3.366e^-4	0.874	UTR_5_PRIME Eb1 UPSTREAM Eb1 DOWNSTREAM CG3267	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	6583251	3R_6583251_SNP [dm3] 3R_10757529_SNP [dm6]	A	G	3.367e^-4	0.874	NON_SYNONYMOUS_CODING CG31272 EXON CR45015
X	9322347	X_9322347_SNP [dm3] X_9428314_SNP [dm6]	A	C	3.388e^-4	0.874	INTRON mgl	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	11311237	2L_11311237_SNP [dm3] 2L_11311237_SNP [dm6]	C	T	3.401e^-4	0.874	INTERGENIC
2L	15139116	2L_15139116_SNP [dm3] 2L_15139116_SNP [dm6]	C	A	3.416e^-4	0.874	INTERGENIC
3R	2218960	3R_2218960_SNP [dm3] 3R_6393238_SNP [dm6]	A	T	3.419e^-4	0.874	INTRON Dmtn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	6924104	2R_6924104_SNP [dm3] 2R_11036599_SNP [dm6]	A	C	3.424e^-4	0.874	INTRON luna
2L	1258689	2L_1258689_SNP [dm3] 2L_1258689_SNP [dm6]	A	G	3.427e^-4	0.874	INTRON robo3
X	6136378	X_6136378_SNP [dm3] X_6242345_SNP [dm6]	C	G	3.428e^-4	0.874	INTRON Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	14543725	2L_14543725_SNP [dm3] 2L_14543725_SNP [dm6]	A	G	3.434e^-4	0.874	INTERGENIC
3R	6838451	3R_6838451_SNP [dm3] 3R_11012729_SNP [dm6]	C	G	3.443e^-4	0.874	INTRON CG34114
3L	13162244	3L_13162244_SNP [dm3] 3L_13169144_SNP [dm6]	T	A	3.454e^-4	0.874	INTERGENIC
3R	2513785	3R_2513785_SNP [dm3] 3R_6688063_SNP [dm6]	T	A	3.454e^-4	0.874	DOWNSTREAM Ccp84Ag INTERGENIC
X	12013129	X_12013129_INS [dm3] X_12119096_INS [dm6]	T	TTTTAGGCCCCT...	3.456e^-4	0.874	INTRON Ten-a
2L	19439755	2L_19439755_SNP [dm3] 2L_19439755_SNP [dm6]	T	A	3.465e^-4	0.874	UPSTREAM CG10237 INTRON CG10237	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12478180	2R_12478180_SNP [dm3] 2R_16590675_SNP [dm6]	G	A	3.465e^-4	0.874	SYNONYMOUS_CODING CG8306	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18015420	2R_18015420_SNP [dm3] 2R_22127915_SNP [dm6]	T	C	3.468e^-4	0.874	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D
2L	12618632	2L_12618632_SNP [dm3] 2L_12618632_SNP [dm6]	C	T	3.474e^-4	0.874	UTR_5_PRIME nub UPSTREAM nub INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2796907	3L_2796907_SNP [dm3] 3L_2796907_SNP [dm6]	C	T	3.484e^-4	0.874	INTRON CG43444	TF binding site mE1_TFBS_inv
3R	17670911	3R_17670911_SNP [dm3] 3R_21845189_SNP [dm6]	C	A	3.487e^-4	0.874	NON_SYNONYMOUS_CODING Gr93c UPSTREAM CR44087 DOWNSTREAM Gr93d
X	14875128	X_14875128_SNP [dm3] X_14981095_SNP [dm6]	G	C	3.488e^-4	0.874	INTRON eag
X	20532430	X_20532430_SNP [dm3] X_20661403_SNP [dm6]	G	T	3.489e^-4	0.874	UTR_3_PRIME Cyp6v1 UPSTREAM CG1835 DOWNSTREAM Cyp6v1
2R	20195283	2R_20195283_SNP [dm3] 2R_24307760_SNP [dm6]	T	C	3.490e^-4	0.874	INTRON betaTub60D	regulatory region REDfly_CRMs
2L	14012460	2L_14012460_SNP [dm3] 2L_14012460_SNP [dm6]	A	T	3.490e^-4	0.874	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13898869	3L_13898869_INS [dm3] 3L_13905769_INS [dm6]	T	TT	3.492e^-4	0.874	INTERGENIC
3L	2037735	3L_2037735_SNP [dm3] 3L_2037735_SNP [dm6]	G	C	3.494e^-4	0.874	NON_SYNONYMOUS_CODING CG42355
3R	8888424	3R_8888424_SNP [dm3] 3R_13062702_SNP [dm6]	G	T	3.496e^-4	0.874	UTR_5_PRIME sim INTRON sim
3L	6903238	3L_6903238_SNP [dm3] 3L_6910138_SNP [dm6]	T	C	3.498e^-4	0.874	INTERGENIC
2R	12635987	2R_12635987_SNP [dm3] 2R_16748482_SNP [dm6]	C	A	3.498e^-4	0.874	DOWNSTREAM Acp53C14b INTRON Acp53C14a
3L	4084692	3L_4084692_SNP [dm3] 3L_4084692_SNP [dm6]	G	T	3.503e^-4	0.874	INTRON Gad1
2L	20378072	2L_20378072_SNP [dm3] 2L_20378072_SNP [dm6]	C	T	3.506e^-4	0.874	NON_SYNONYMOUS_CODING CG16798	TF binding site mE1_TFBS_cad
3L	11167289	3L_11167289_SNP [dm3] 3L_11174189_SNP [dm6]	T	A	3.507e^-4	0.874	INTRON CG14142
3R	10039374	3R_10039374_SNP [dm3] 3R_14213652_SNP [dm6]	C	T	3.511e^-4	0.874	INTRON Dop1R1
2L	21764213	2L_21764213_SNP [dm3] 2L_21764213_SNP [dm6]	A	G	3.513e^-4	0.874	INTRON CG31612
2L	19218077	2L_19218077_SNP [dm3] 2L_19218077_SNP [dm6]	A	G	3.515e^-4	0.874	EXON CR44189	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11354609	2L_11354609_SNP [dm3] 2L_11354609_SNP [dm6]	G	A	3.522e^-4	0.874	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2R	6330989	2R_6330989_SNP [dm3] 2R_10443484_SNP [dm6]	G	A	3.523e^-4	0.874	UPSTREAM Galphao INTRON Galphao
3R	6838380	3R_6838380_SNP [dm3] 3R_11012658_SNP [dm6]	A	T	3.529e^-4	0.874	INTRON CG34114
3L	6094601	3L_6094601_SNP [dm3] 3L_6101501_SNP [dm6]	A	G	3.533e^-4	0.874	INTRON Ets65A
2L	9015641	2L_9015641_DEL [dm3] 2L_9015641_DEL [dm6]	GG	A	3.540e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22828435	3R_22828435_SNP [dm3] 3R_27002713_SNP [dm6]	G	A	3.541e^-4	0.874	SYNONYMOUS_CODING CG31077 DOWNSTREAM CG6296 INTRON RYa-R
3L	8519751	3L_8519751_SNP [dm3] 3L_8526651_SNP [dm6]	G	T	3.550e^-4	0.874	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	1595593	3L_1595593_SNP [dm3] 3L_1595593_SNP [dm6]	A	G	3.552e^-4	0.874	NON_SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25649406	3R_25649406_SNP [dm3] 3R_29823684_SNP [dm6]	C	G	3.556e^-4	0.874	INTRON neo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11820416	2L_11820416_SNP [dm3] 2L_11820416_SNP [dm6]	G	A	3.566e^-4	0.874	INTRON Pde1c
2L	4760002	2L_4760002_SNP [dm3] 2L_4760002_SNP [dm6]	T	C	3.568e^-4	0.874	INTRON CG15630
X	13038175	X_13038175_SNP [dm3] X_13144142_SNP [dm6]	T	A	3.578e^-4	0.874	INTRON CG32645
2L	8291010	2L_8291010_SNP [dm3] 2L_8291010_SNP [dm6]	G	T	3.599e^-4	0.874	DOWNSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_twi
3L	8863464	3L_8863464_DEL [dm3] 3L_8870364_DEL [dm6]	GGC	G	3.604e^-4	0.874	INTRON dally
2L	19392369	2L_19392369_SNP [dm3] 2L_19392369_SNP [dm6]	C	G	3.604e^-4	0.874	SYNONYMOUS_CODING CG17544	TF binding site mE1_TFBS_cad
2R	11838865	2R_11838865_SNP [dm3] 2R_15951360_SNP [dm6]	A	G	3.608e^-4	0.874	NON_SYNONYMOUS_CODING Strn-Mlck UPSTREAM Strn-Mlck DOWNSTREAM Strn-Mlck
3L	21600208	3L_21600208_SNP [dm3] 3L_21607108_SNP [dm6]	T	G	3.625e^-4	0.874	INTRON TfAP-2
2R	2807871	2R_2807871_SNP [dm3] 2R_6920366_SNP [dm6]	T	C	3.629e^-4	0.874	UTR_3_PRIME CG30158
3L	6737757	3L_6737757_SNP [dm3] 3L_6744657_SNP [dm6]	G	A	3.639e^-4	0.874	SYNONYMOUS_CODING velo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	8496482	2L_8496482_INS [dm3] 2L_8496482_INS [dm6]	A	ACTA	3.650e^-4	0.874	UPSTREAM Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8859805	3L_8859805_SNP [dm3] 3L_8866705_SNP [dm6]	C	T	3.655e^-4	0.874	INTRON dally
2L	11182348	2L_11182348_SNP [dm3] 2L_11182348_SNP [dm6]	T	A	3.661e^-4	0.874	INTRON Ca-beta
3L	19311561	3L_19311561_SNP [dm3] 3L_19318461_SNP [dm6]	C	T	3.661e^-4	0.874	INTRON pip	TF binding site mE1_TFBS_cad
3L	1002422	3L_1002422_INS [dm3] 3L_1002422_INS [dm6]	A	ATACTAGGTACGA...	3.662e^-4	0.874	INTRON trio
2R	7108217	2R_7108217_SNP [dm3] 2R_11220712_SNP [dm6]	G	T	3.668e^-4	0.874	UPSTREAM CG9084 INTRON Syx6
3R	18982377	3R_18982377_SNP [dm3] 3R_23156655_SNP [dm6]	C	T	3.669e^-4	0.874	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5718115	2L_5718115_SNP [dm3] 2L_5718115_SNP [dm6]	A	C	3.680e^-4	0.874	DOWNSTREAM CG11149 & 1 other INTERGENIC
3L	11427569	3L_11427569_INS [dm3] 3L_11434469_INS [dm6]	C	CC	3.682e^-4	0.874	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	5673312	3L_5673312_SNP [dm3] 3L_5680212_SNP [dm6]	G	A	3.682e^-4	0.874	INTRON sif
3L	16010431	3L_16010431_SNP [dm3] 3L_16017331_SNP [dm6]	T	A	3.686e^-4	0.874	EXON CR43950	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9900178	3L_9900178_SNP [dm3] 3L_9907078_SNP [dm6]	C	G	3.688e^-4	0.874	INTERGENIC
2L	11600182	2L_11600182_SNP [dm3] 2L_11600182_SNP [dm6]	T	C	3.695e^-4	0.874	INTRON kek2
3R	19442246	3R_19442246_SNP [dm3] 3R_23616524_SNP [dm6]	T	C	3.697e^-4	0.874	INTRON CG31145
2R	12498095	2R_12498095_SNP [dm3] 2R_16610590_SNP [dm6]	C	T	3.698e^-4	0.874	INTRON CG5065
2L	3698185	2L_3698185_SNP [dm3] 2L_3698185_SNP [dm6]	C	G	3.701e^-4	0.874	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
3L	447783	3L_447783_SNP [dm3] 3L_447783_SNP [dm6]	A	T	3.712e^-4	0.874	UTR_5_PRIME klar INTRON klar	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	6848307	3R_6848307_SNP [dm3] 3R_11022585_SNP [dm6]	G	A	3.712e^-4	0.874	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	3981408	3L_3981408_SNP [dm3] 3L_3981408_SNP [dm6]	A	G	3.713e^-4	0.874	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
X	4444252	X_4444252_DEL [dm3] X_4550219_DEL [dm6]	AA	A	3.714e^-4	0.874	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
3L	13898863	3L_13898863_SNP [dm3] 3L_13905763_SNP [dm6]	C	T	3.721e^-4	0.874	INTERGENIC
3R	12289675	3R_12289675_SNP [dm3] 3R_16463953_SNP [dm6]	A	C	3.724e^-4	0.874	NON_SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_sens
3R	2767591	3R_2767591_DEL [dm3] 3R_6941869_DEL [dm6]	CC	C	3.724e^-4	0.874	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17420615	3R_17420615_SNP [dm3] 3R_21594893_SNP [dm6]	C	T	3.732e^-4	0.874	DOWNSTREAM CR43653 INTRON InR	TF binding site BDTNP1_TFBS_dl
3L	11486441	3L_11486441_DEL [dm3] 3L_11493341_DEL [dm6]	AT	A	3.733e^-4	0.874	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2621662	3L_2621662_SNP [dm3] 3L_2621662_SNP [dm6]	C	A	3.753e^-4	0.874	INTRON Pxn
3R	23403538	3R_23403538_INS [dm3] 3R_27577816_INS [dm6]	G	GCG	3.756e^-4	0.874	INTRON wdb
X	11836506	X_11836506_SNP [dm3] X_11942473_SNP [dm6]	T	G	3.769e^-4	0.874	INTRON cac
2L	14481277	2L_14481277_SNP [dm3] 2L_14481277_SNP [dm6]	C	T	3.774e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	7108211	2R_7108211_SNP [dm3] 2R_11220706_SNP [dm6]	T	A	3.795e^-4	0.874	UPSTREAM CG9084 INTRON Syx6
3L	8837215	3L_8837215_SNP [dm3] 3L_8844115_SNP [dm6]	A	C	3.798e^-4	0.874	INTRON dally
3L	17542338	3L_17542338_SNP [dm3] 3L_17549238_SNP [dm6]	C	A	3.803e^-4	0.874	UPSTREAM CG7542 & 1 other INTERGENIC
2R	9470736	2R_9470736_SNP [dm3] 2R_13583231_SNP [dm6]	A	G	3.814e^-4	0.874	SYNONYMOUS_CODING CG6191 UTR_3_PRIME CG45088
3R	14037455	3R_14037455_SNP [dm3] 3R_18211733_SNP [dm6]	C	A	3.819e^-4	0.874	INTRON CG7985
2R	14193682	2R_14193682_SNP [dm3] 2R_18306177_SNP [dm6]	T	G	3.821e^-4	0.874	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
2L	1097426	2L_1097426_SNP [dm3] 2L_1097426_SNP [dm6]	A	G	3.823e^-4	0.874	INTRON CG4629
3L	16332819	3L_16332819_SNP [dm3] 3L_16339719_SNP [dm6]	A	T	3.824e^-4	0.874	INTRON CG4998
3L	8863422	3L_8863422_SNP [dm3] 3L_8870322_SNP [dm6]	C	T	3.826e^-4	0.874	INTRON dally
2R	5860868	2R_5860868_SNP [dm3] 2R_9973363_SNP [dm6]	A	G	3.830e^-4	0.874	DOWNSTREAM CG12134 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	11486366	3L_11486366_SNP [dm3] 3L_11493266_SNP [dm6]	G	A	3.843e^-4	0.874	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18214976	3L_18214976_SNP [dm3] 3L_18221876_SNP [dm6]	C	G	3.847e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19990357	3R_19990357_SNP [dm3] 3R_24164635_SNP [dm6]	A	T	3.849e^-4	0.874	SYNONYMOUS_CODING Apc2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	2631221	2R_2631221_SNP [dm3] 2R_6743716_SNP [dm6]	A	C	3.850e^-4	0.874	SYNONYMOUS_CODING phtf
2R	2637293	2R_2637293_SNP [dm3] 2R_6749788_SNP [dm6]	A	G	3.850e^-4	0.874	DOWNSTREAM CG3267 INTRON Eb1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	2637711	2R_2637711_SNP [dm3] 2R_6750206_SNP [dm6]	T	C	3.850e^-4	0.874	INTRON Eb1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	5027206	X_5027206_INS [dm3] X_5133173_INS [dm6]	C	CG	3.852e^-4	0.874	DOWNSTREAM Rpn13R INTRON rg & 1 other
2L	9998255	2L_9998255_SNP [dm3] 2L_9998255_SNP [dm6]	A	G	3.852e^-4	0.874	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
X	12348898	X_12348898_SNP [dm3] X_12454865_SNP [dm6]	G	A	3.856e^-4	0.874	UTR_5_PRIME CG15927 UPSTREAM CR45615
3L	9104047	3L_9104047_INS [dm3] 3L_9110947_INS [dm6]	G	GTGGCAGTG	3.857e^-4	0.874	INTRON bol
2L	14111845	2L_14111845_SNP [dm3] 2L_14111845_SNP [dm6]	T	A	3.865e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_cad
2R	20021619	2R_20021619_SNP [dm3] 2R_24134096_SNP [dm6]	A	T	3.865e^-4	0.874	SYNONYMOUS_CODING Zfrp8 UPSTREAM tamo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12353536	2R_12353536_SNP [dm3] 2R_16466031_SNP [dm6]	A	C	3.865e^-4	0.874	UPSTREAM CheB53a INTERGENIC
2R	12893661	2R_12893661_SNP [dm3] 2R_17006156_SNP [dm6]	A	G	3.870e^-4	0.874	SYNONYMOUS_CODING CG6805	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	8863426	3L_8863426_SNP [dm3] 3L_8870326_SNP [dm6]	A	T	3.873e^-4	0.874	INTRON dally
2L	14300451	2L_14300451_SNP [dm3] 2L_14300451_SNP [dm6]	A	C	3.879e^-4	0.874	UPSTREAM wb INTRON wb
3L	1255986	3L_1255986_SNP [dm3] 3L_1255986_SNP [dm6]	T	A	3.880e^-4	0.874	UTR_3_PRIME CG9130 & 1 other UPSTREAM CG9134
2R	5829932	2R_5829932_SNP [dm3] 2R_9942427_SNP [dm6]	A	T	3.888e^-4	0.874	INTRON Mef2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	15099172	2L_15099172_DEL [dm3] 2L_15099172_DEL [dm6]	ACTA	A	3.896e^-4	0.874	INTERGENIC
3R	6311646	3R_6311646_SNP [dm3] 3R_10485924_SNP [dm6]	A	C	3.900e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11486451	3L_11486451_SNP [dm3] 3L_11493351_SNP [dm6]	C	A	3.900e^-4	0.874	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14399691	2L_14399691_SNP [dm3] 2L_14399691_SNP [dm6]	G	A	3.907e^-4	0.874	INTRON elB
2R	14233896	2R_14233896_SNP [dm3] 2R_18346391_SNP [dm6]	C	T	3.909e^-4	0.874	INTRON sbb	TF binding site mE1_TFBS_inv
2R	16934511	2R_16934511_INS [dm3] 2R_21047006_INS [dm6]	C	CA	3.912e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15021010	2R_15021010_SNP [dm3] 2R_19133505_SNP [dm6]	A	T	3.912e^-4	0.874	UTR_3_PRIME botv DOWNSTREAM CG15118
2L	8496487	2L_8496487_SNP [dm3] 2L_8496487_SNP [dm6]	T	C	3.918e^-4	0.874	UPSTREAM Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11216178	3L_11216178_SNP [dm3] 3L_11223078_SNP [dm6]	G	C	3.922e^-4	0.874	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9514915	3L_9514915_SNP [dm3] 3L_9521815_SNP [dm6]	C	G	3.928e^-4	0.874	INTRON CG33700
2L	13701910	2L_13701910_DEL [dm3] 2L_13701910_DEL [dm6]	CATGCT	C	3.929e^-4	0.874	INTRON CG31814
3R	26964086	3R_26964086_SNP [dm3] 3R_31138364_SNP [dm6]	A	C	3.936e^-4	0.874	SPLICE_SITE_REGION Gycbeta100B INTRON Gycbeta100B
2L	14001569	2L_14001569_SNP [dm3] 2L_14001569_SNP [dm6]	C	T	3.937e^-4	0.874	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	6898075	3L_6898075_SNP [dm3] 3L_6904975_SNP [dm6]	A	T	3.938e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	3.940e^-4	0.874	INTRON salm
2R	11839150	2R_11839150_SNP [dm3] 2R_15951645_SNP [dm6]	A	C	3.941e^-4	0.874	UTR_3_PRIME Strn-Mlck UPSTREAM Strn-Mlck INTRON Strn-Mlck
X	7746118	X_7746118_SNP [dm3] X_7852085_SNP [dm6]	C	T	3.941e^-4	0.874	DOWNSTREAM CG10920 INTERGENIC
3L	9328572	3L_9328572_SNP [dm3] 3L_9335472_SNP [dm6]	C	T	3.944e^-4	0.874	UPSTREAM PGRP-LA INTRON PGRP-LA
3L	7987660	3L_7987660_SNP [dm3] 3L_7994560_SNP [dm6]	C	T	3.947e^-4	0.874	INTRON nmo
3R	25901689	3R_25901689_SNP [dm3] 3R_30075967_SNP [dm6]	G	T	3.949e^-4	0.874	INTRON sima
2L	7493204	2L_7493204_SNP [dm3] 2L_7493204_SNP [dm6]	C	A	3.973e^-4	0.874	INTRON Ziz
3L	6094604	3L_6094604_SNP [dm3] 3L_6101504_SNP [dm6]	T	A	3.981e^-4	0.874	INTRON Ets65A
3L	4369813	3L_4369813_SNP [dm3] 3L_4369813_SNP [dm6]	T	G	3.992e^-4	0.874	INTRON DopEcR
2R	2636824	2R_2636824_SNP [dm3] 2R_6749319_SNP [dm6]	A	G	3.992e^-4	0.874	UTR_5_PRIME Eb1 UPSTREAM Eb1 DOWNSTREAM CG3267	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	17647299	X_17647299_SNP [dm3] X_17753266_SNP [dm6]	A	G	3.992e^-4	0.874	INTERGENIC
3R	8585185	3R_8585185_SNP [dm3] 3R_12759463_SNP [dm6]	A	G	3.995e^-4	0.874	INTRON beat-Vc
2L	2393490	2L_2393490_SNP [dm3] 2L_2393490_SNP [dm6]	T	G	3.998e^-4	0.874	INTRON VGlut
3L	13615885	3L_13615885_SNP [dm3] 3L_13622785_SNP [dm6]	A	T	4.000e^-4	0.874	INTRON bru-3
3R	22868815	3R_22868815_SNP [dm3] 3R_27043093_SNP [dm6]	A	G	4.000e^-4	0.874	INTRON RYa-R
3L	9498521	3L_9498521_SNP [dm3] 3L_9505421_SNP [dm6]	A	T	4.001e^-4	0.874	UPSTREAM path INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9667042	X_9667042_SNP [dm3] X_9773009_SNP [dm6]	G	A	4.028e^-4	0.874	INTERGENIC
2L	12617293	2L_12617293_SNP [dm3] 2L_12617293_SNP [dm6]	G	T	4.029e^-4	0.874	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	1353252	2R_1353252_SNP [dm3] 2R_5465747_SNP [dm6]	A	G	4.033e^-4	0.874	INTERGENIC	transposable element FlyBase
3R	5438426	3R_5438426_SNP [dm3] 3R_9612704_SNP [dm6]	G	A	4.037e^-4	0.874	INTRON CG8312
3R	22868823	3R_22868823_SNP [dm3] 3R_27043101_SNP [dm6]	T	G	4.038e^-4	0.874	INTRON RYa-R
X	8129885	X_8129885_SNP [dm3] X_8235852_SNP [dm6]	A	C	4.058e^-4	0.874	INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1921927	3L_1921927_SNP [dm3] 3L_1921927_SNP [dm6]	A	G	4.080e^-4	0.874	SYNONYMOUS_CODING Dbx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2796679	3L_2796679_SNP [dm3] 3L_2796679_SNP [dm6]	C	T	4.080e^-4	0.874	SPLICE_SITE_ACCEPTOR CG43444 SPLICE_SITE_REGION CG43444 SYNONYMOUS_CODING CG43444 UTR_5_PRIME CG43444 INTRON CG43444	TF binding site mE1_TFBS_inv
3R	18983638	3R_18983638_SNP [dm3] 3R_23157916_SNP [dm6]	T	G	4.090e^-4	0.874	UPSTREAM unk DOWNSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7458085	2R_7458085_SNP [dm3] 2R_11570580_SNP [dm6]	A	G	4.103e^-4	0.874	INTERGENIC
3R	6315220	3R_6315220_SNP [dm3] 3R_10489498_SNP [dm6]	T	C	4.106e^-4	0.874	EXON CR45576
3L	18836793	3L_18836793_SNP [dm3] 3L_18843693_SNP [dm6]	A	C	4.126e^-4	0.874	DOWNSTREAM CR32027 INTRON Indy
3R	20953102	3R_20953102_SNP [dm3] 3R_25127380_SNP [dm6]	T	A	4.128e^-4	0.874	UPSTREAM Clbn & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12243976	3R_12243976_SNP [dm3] 3R_16418254_SNP [dm6]	G	C	4.131e^-4	0.874	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	2708000	2L_2708000_SNP [dm3] 2L_2708000_SNP [dm6]	A	T	4.131e^-4	0.874	INTRON CG31690
3L	1345297	3L_1345297_SNP [dm3] 3L_1345297_SNP [dm6]	A	G	4.131e^-4	0.874	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3R	10904241	3R_10904241_SNP [dm3] 3R_15078519_SNP [dm6]	C	T	4.138e^-4	0.874	DOWNSTREAM CG6974 & 1 other INTERGENIC
3L	21667503	3L_21667503_SNP [dm3] 3L_21674403_SNP [dm6]	G	A	4.143e^-4	0.874	UTR_3_PRIME CG11249 & 1 other	TF binding site mE1_TFBS_cad
3L	8211286	3L_8211286_SNP [dm3] 3L_8218186_SNP [dm6]	T	G	4.149e^-4	0.874	DOWNSTREAM CG13674 INTERGENIC
3R	20925954	3R_20925954_SNP [dm3] 3R_25100232_SNP [dm6]	A	C	4.155e^-4	0.874	NON_SYNONYMOUS_CODING CG33095 UTR_3_PRIME CG33096 DOWNSTREAM CG33096
2L	19457862	2L_19457862_SNP [dm3] 2L_19457862_SNP [dm6]	C	T	4.159e^-4	0.874	DOWNSTREAM CG10026 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9830180	X_9830180_SNP [dm3] X_9936147_SNP [dm6]	G	A	4.160e^-4	0.874	INTERGENIC
2L	3017867	2L_3017867_SNP [dm3] 2L_3017867_SNP [dm6]	T	G	4.173e^-4	0.874	SYNONYMOUS_CODING CG17224 UPSTREAM CG17264
2L	11012152	2L_11012152_DEL [dm3] 2L_11012152_DEL [dm6]	GTCATTAGAT	A	4.174e^-4	0.874	DOWNSTREAM dUTPase INTERGENIC
3R	17764263	3R_17764263_DEL [dm3] 3R_21938541_DEL [dm6]	TT	T	4.176e^-4	0.874	INTERGENIC
3R	10605555	3R_10605555_SNP [dm3] 3R_14779833_SNP [dm6]	T	A	4.184e^-4	0.874	INTRON jvl
3L	11730610	3L_11730610_SNP [dm3] 3L_11737510_SNP [dm6]	G	A	4.191e^-4	0.874	SPLICE_SITE_REGION CG6024 INTRON CG6024
2L	14124337	2L_14124337_SNP [dm3] 2L_14124337_SNP [dm6]	T	G	4.193e^-4	0.874	INTERGENIC
2R	19562874	2R_19562874_DEL [dm3] 2R_23675351_DEL [dm6]	CC	C	4.194e^-4	0.874	SPLICE_SITE_REGION Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5706325	3L_5706325_SNP [dm3] 3L_5713225_SNP [dm6]	A	T	4.199e^-4	0.874	UPSTREAM CG44521 INTRON sif
3L	11484827	3L_11484827_DEL [dm3] 3L_11491727_DEL [dm6]	GG	G	4.207e^-4	0.874	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11605319	2R_11605319_SNP [dm3] 2R_15717814_SNP [dm6]	A	C	4.217e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3571863	3L_3571863_INS [dm3] 3L_3571863_INS [dm6]	C	CCC	4.217e^-4	0.874	INTRON Eip63E
3R	24700490	3R_24700490_SNP [dm3] 3R_28874768_SNP [dm6]	C	T	4.227e^-4	0.874	SYNONYMOUS_CODING CG14529 UPSTREAM CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7112350	3R_7112350_SNP [dm3] 3R_11286628_SNP [dm6]	G	A	4.230e^-4	0.874	INTRON CR31386
3R	20997330	3R_20997330_SNP [dm3] 3R_25171608_SNP [dm6]	G	A	4.230e^-4	0.874	SYNONYMOUS_CODING lobo	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15093320	2L_15093320_DEL [dm3] 2L_15093320_DEL [dm6]	TTGATTAT	T	4.246e^-4	0.874	INTRON CG15270
3L	14561156	3L_14561156_SNP [dm3] 3L_14568056_SNP [dm6]	G	A	4.249e^-4	0.874	SYNONYMOUS_STOP CG42758
X	14763129	X_14763129_DEL [dm3] X_14869096_DEL [dm6]	AA	A	4.253e^-4	0.874	INTRON Flo2 & 1 other
3R	14970227	3R_14970227_SNP [dm3] 3R_19144505_SNP [dm6]	G	C	4.254e^-4	0.874	INTRON Ppcs
3R	10948139	3R_10948139_SNP [dm3] 3R_15122417_SNP [dm6]	C	T	4.257e^-4	0.874	INTRON CG42788
3R	26295253	3R_26295253_SNP [dm3] 3R_30469531_SNP [dm6]	T	C	4.262e^-4	0.874	INTRON PH4alphaEFB
2R	9956630	2R_9956630_SNP [dm3] 2R_14069125_SNP [dm6]	G	C	4.263e^-4	0.874	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12592711	2L_12592711_SNP [dm3] 2L_12592711_SNP [dm6]	G	A	4.266e^-4	0.874	INTRON nub
3R	6849731	3R_6849731_SNP [dm3] 3R_11024009_SNP [dm6]	T	C	4.272e^-4	0.874	INTRON CG34114
3R	10663734	3R_10663734_SNP [dm3] 3R_14838012_SNP [dm6]	G	A	4.292e^-4	0.874	INTRON btsz
2R	7301667	2R_7301667_SNP [dm3] 2R_11414162_SNP [dm6]	G	A	4.310e^-4	0.874	UPSTREAM CG7763 INTRON Drip
3L	1129682	3L_1129682_SNP [dm3] 3L_1129682_SNP [dm6]	G	A	4.332e^-4	0.874	INTERGENIC	regulatory region REDfly_CRMs
3R	7691583	3R_7691583_SNP [dm3] 3R_11865861_SNP [dm6]	G	C	4.342e^-4	0.874	INTRON CG6959
3L	1906500	3L_1906500_SNP [dm3] 3L_1906500_SNP [dm6]	T	G	4.343e^-4	0.874	INTRON CG1887
3L	10062488	3L_10062488_SNP [dm3] 3L_10069388_SNP [dm6]	G	A	4.351e^-4	0.874	INTRON dpr6
2L	8131530	2L_8131530_SNP [dm3] 2L_8131530_SNP [dm6]	T	G	4.368e^-4	0.874	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da
2L	21769964	2L_21769964_SNP [dm3] 2L_21769964_SNP [dm6]	C	G	4.375e^-4	0.874	INTRON CG31612
2L	8496496	2L_8496496_INS [dm3] 2L_8496496_INS [dm6]	G	GCTG	4.376e^-4	0.874	UPSTREAM Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10132151	3R_10132151_SNP [dm3] 3R_14306429_SNP [dm6]	T	A	4.376e^-4	0.874	SYNONYMOUS_CODING su_Hw_
2R	14123702	2R_14123702_SNP [dm3] 2R_18236197_SNP [dm6]	C	A	4.390e^-4	0.874	UTR_3_PRIME fj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11486883	3L_11486883_SNP [dm3] 3L_11493783_SNP [dm6]	C	T	4.393e^-4	0.874	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	20414898	X_20414898_INS [dm3] X_20543871_INS [dm6]	T	TTT	4.398e^-4	0.874	INTRON RunxB
X	11344782	X_11344782_SNP [dm3] X_11450749_SNP [dm6]	A	G	4.400e^-4	0.874	INTRON Evi5
X	8814609	X_8814609_SNP [dm3] X_8920576_SNP [dm6]	C	G	4.400e^-4	0.874	UPSTREAM CR44111 INTRON rdgA
3L	6020395	3L_6020395_SNP [dm3] 3L_6027295_SNP [dm6]	A	G	4.401e^-4	0.874	DOWNSTREAM PVRAP INTERGENIC
3R	8122231	3R_8122231_SNP [dm3] 3R_12296509_SNP [dm6]	C	A	4.404e^-4	0.874	DOWNSTREAM svp INTRON svp
X	15437714	X_15437714_SNP [dm3] X_15543681_SNP [dm6]	T	C	4.404e^-4	0.874	INTRON Ac13E
2L	2393575	2L_2393575_SNP [dm3] 2L_2393575_SNP [dm6]	A	G	4.412e^-4	0.874	INTRON VGlut
3R	10129685	3R_10129685_SNP [dm3] 3R_14303963_SNP [dm6]	G	A	4.424e^-4	0.874	SYNONYMOUS_CODING CG3259 DOWNSTREAM su_Hw_	TF binding site mE1_TFBS_cad
3L	16967865	3L_16967865_SNP [dm3] 3L_16974765_SNP [dm6]	G	T	4.438e^-4	0.874	INTRON Exn	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	1870196	3L_1870196_SNP [dm3] 3L_1870196_SNP [dm6]	C	T	4.440e^-4	0.874	SYNONYMOUS_CODING CG13924 DOWNSTREAM CG12025	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4843764	X_4843764_SNP [dm3] X_4949731_SNP [dm6]	C	T	4.443e^-4	0.874	INTRON Ptp4E	TF binding site mE1_TFBS_cad
3R	7106806	3R_7106806_SNP [dm3] 3R_11281084_SNP [dm6]	C	A	4.448e^-4	0.874	INTRON CR31386
3R	22961782	3R_22961782_SNP [dm3] 3R_27136060_SNP [dm6]	G	A	4.459e^-4	0.874	INTRON CG6051
3R	22860237	3R_22860237_SNP [dm3] 3R_27034515_SNP [dm6]	C	A	4.467e^-4	0.874	INTRON RYa-R	TF binding site BDTNP1_TFBS_da
3L	15176813	3L_15176813_SNP [dm3] 3L_15183713_SNP [dm6]	A	T	4.473e^-4	0.874	INTERGENIC
3L	6957296	3L_6957296_SNP [dm3] 3L_6964196_SNP [dm6]	A	T	4.473e^-4	0.874	INTRON sgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10886542	2L_10886542_SNP [dm3] 2L_10886542_SNP [dm6]	G	A	4.475e^-4	0.874	INTRON CR44490
2L	4111213	2L_4111213_SNP [dm3] 2L_4111213_SNP [dm6]	T	C	4.477e^-4	0.874	INTRON ed
3L	5627915	3L_5627915_SNP [dm3] 3L_5634815_SNP [dm6]	C	T	4.483e^-4	0.874	INTRON Blimp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	13426058	3L_13426058_INS [dm3] 3L_13432958_INS [dm6]	A	AACACTA	4.485e^-4	0.874	UPSTREAM tRNA:V4:70BCb DOWNSTREAM tRNA:V4:70BCa INTRON CG10713
3L	11537328	3L_11537328_SNP [dm3] 3L_11544228_SNP [dm6]	C	T	4.485e^-4	0.874	INTRON Mob2
2R	6846006	2R_6846006_SNP [dm3] 2R_10958501_SNP [dm6]	C	A	4.490e^-4	0.874	INTERGENIC
2L	14300412	2L_14300412_INS [dm3] 2L_14300412_INS [dm6]	A	AAA	4.492e^-4	0.874	UPSTREAM wb INTRON wb
3L	2083256	3L_2083256_SNP [dm3] 3L_2083256_SNP [dm6]	G	T	4.492e^-4	0.874	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15139025	2L_15139025_DEL [dm3] 2L_15139025_DEL [dm6]	CTCATAATGATG...	C	4.504e^-4	0.874	INTERGENIC
3L	16100246	3L_16100246_SNP [dm3] 3L_16107146_SNP [dm6]	A	G	4.506e^-4	0.874	SYNONYMOUS_CODING Zn72D UTR_3_PRIME Zn72D DOWNSTREAM CG43295
3R	17481303	3R_17481303_SNP [dm3] 3R_21655581_SNP [dm6]	G	A	4.510e^-4	0.874	INTRON E2f	TF binding site BDTNP1_TFBS_da
3L	1593414	3L_1593414_SNP [dm3] 3L_1593414_SNP [dm6]	A	T	4.512e^-4	0.874	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13449050	2L_13449050_SNP [dm3] 2L_13449050_SNP [dm6]	T	C	4.516e^-4	0.874	SYNONYMOUS_CODING Hsp60D INTRON CG42784	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	20960400	3R_20960400_SNP [dm3] 3R_25134678_SNP [dm6]	A	C	4.529e^-4	0.874	INTRON Bili
X	4444142	X_4444142_SNP [dm3] X_4550109_SNP [dm6]	A	T	4.534e^-4	0.874	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
3R	21291528	3R_21291528_SNP [dm3] 3R_25465806_SNP [dm6]	G	A	4.539e^-4	0.874	INTRON Fur1
2L	9982743	2L_9982743_SNP [dm3] 2L_9982743_SNP [dm6]	C	G	4.542e^-4	0.874	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3R	18983465	3R_18983465_SNP [dm3] 3R_23157743_SNP [dm6]	A	T	4.550e^-4	0.874	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5651514	3L_5651514_SNP [dm3] 3L_5658414_SNP [dm6]	G	A	4.555e^-4	0.874	UTR_5_PRIME sif INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23296473	3R_23296473_SNP [dm3] 3R_27470751_SNP [dm6]	C	T	4.567e^-4	0.874	INTERGENIC
3R	7740802	3R_7740802_SNP [dm3] 3R_11915080_SNP [dm6]	G	A	4.592e^-4	0.874	INTRON Cad87A
3L	1332619	3L_1332619_SNP [dm3] 3L_1332619_SNP [dm6]	G	C	4.595e^-4	0.874	SYNONYMOUS_CODING msd5 DOWNSTREAM mtacp1 & 2 others
3L	18836861	3L_18836861_SNP [dm3] 3L_18843761_SNP [dm6]	G	A	4.596e^-4	0.874	DOWNSTREAM CR32027 INTRON Indy
X	15167273	X_15167273_SNP [dm3] X_15273240_SNP [dm6]	T	C	4.600e^-4	0.874	UPSTREAM CG9106 INTERGENIC
3R	25343441	3R_25343441_SNP [dm3] 3R_29517719_SNP [dm6]	C	T	4.606e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	19425322	2L_19425322_SNP [dm3] 2L_19425322_SNP [dm6]	G	T	4.606e^-4	0.874	UPSTREAM CG13085 & 1 other INTRON Pax & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	8891838	X_8891838_SNP [dm3] X_8997805_SNP [dm6]	G	A	4.608e^-4	0.874	INTRON rdgA & 1 other
X	15210135	X_15210135_SNP [dm3] X_15316102_SNP [dm6]	C	A	4.618e^-4	0.874	INTRON gce EXON CR44961	TF binding site mE1_TFBS_cad
X	12640516	X_12640516_SNP [dm3] X_12746483_SNP [dm6]	G	A	4.618e^-4	0.874	NON_SYNONYMOUS_CODING CG4004 INTRON CG4004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
2L	9982741	2L_9982741_SNP [dm3] 2L_9982741_SNP [dm6]	A	T	4.620e^-4	0.874	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	2620859	2L_2620859_SNP [dm3] 2L_2620859_SNP [dm6]	C	G	4.630e^-4	0.874	DOWNSTREAM CG43403 INTERGENIC
3L	455234	3L_455234_SNP [dm3] 3L_455234_SNP [dm6]	C	G	4.642e^-4	0.874	INTRON klar
2R	5875736	2R_5875736_SNP [dm3] 2R_9988231_SNP [dm6]	T	C	4.657e^-4	0.874	UPSTREAM TER94 EXON CR45324	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Trl
3R	17576290	3R_17576290_SNP [dm3] 3R_21750568_SNP [dm6]	C	T	4.660e^-4	0.874	SYNONYMOUS_CODING CG31233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2915581	3L_2915581_SNP [dm3] 3L_2915581_SNP [dm6]	A	G	4.666e^-4	0.874	SYNONYMOUS_CODING CG9970 INTRON Shab	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20572826	2L_20572826_SNP [dm3] 2L_20572826_SNP [dm6]	T	G	4.667e^-4	0.874	INTRON CR45347
3R	8265543	3R_8265543_SNP [dm3] 3R_12439821_SNP [dm6]	A	C	4.669e^-4	0.874	UPSTREAM CG17207 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	14425369	2L_14425369_SNP [dm3] 2L_14425369_SNP [dm6]	C	G	4.670e^-4	0.874	UPSTREAM Cpr35B INTERGENIC
3R	25324100	3R_25324100_SNP [dm3] 3R_29498378_SNP [dm6]	T	C	4.675e^-4	0.874	SYNONYMOUS_CODING CG2010 DOWNSTREAM Trc8	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	1373350	2R_1373350_SNP [dm3] 2R_5485845_SNP [dm6]	T	C	4.681e^-4	0.874	INTRON CG30440
2L	9122099	2L_9122099_SNP [dm3] 2L_9122099_SNP [dm6]	C	A	4.683e^-4	0.874	UPSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	7073588	2R_7073588_SNP [dm3] 2R_11186083_SNP [dm6]	C	T	4.687e^-4	0.874	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	8883300	2L_8883300_SNP [dm3] 2L_8883300_SNP [dm6]	G	A	4.690e^-4	0.874	INTERGENIC
2L	14132958	2L_14132958_SNP [dm3] 2L_14132958_SNP [dm6]	A	C	4.691e^-4	0.874	INTERGENIC
X	18971639	X_18971639_SNP [dm3] X_19077606_SNP [dm6]	T	A	4.704e^-4	0.874	UPSTREAM CG7406 INTERGENIC
3L	11507999	3L_11507999_SNP [dm3] 3L_11514899_SNP [dm6]	G	T	4.721e^-4	0.874	NON_SYNONYMOUS_CODING CG7512
2R	10947049	2R_10947049_SNP [dm3] 2R_15059544_SNP [dm6]	G	C	4.730e^-4	0.874	INTERGENIC
X	10318435	X_10318435_SNP [dm3] X_10424402_SNP [dm6]	G	T	4.745e^-4	0.874	INTRON CG32683
3R	19442442	3R_19442442_SNP [dm3] 3R_23616720_SNP [dm6]	T	C	4.754e^-4	0.874	INTRON CG31145
3R	26937041	3R_26937041_SNP [dm3] 3R_31111319_SNP [dm6]	C	T	4.755e^-4	0.874	INTERGENIC
3R	19442433	3R_19442433_SNP [dm3] 3R_23616711_SNP [dm6]	T	C	4.762e^-4	0.874	INTRON CG31145
2L	15138860	2L_15138860_SNP [dm3] 2L_15138860_SNP [dm6]	T	C	4.769e^-4	0.874	INTERGENIC
2R	12995683	2R_12995683_SNP [dm3] 2R_17108178_SNP [dm6]	T	G	4.782e^-4	0.874	UPSTREAM CG15611 DOWNSTREAM CG30456 INTERGENIC
3L	11597288	3L_11597288_SNP [dm3] 3L_11604188_SNP [dm6]	C	A	4.783e^-4	0.874	SYNONYMOUS_CODING CG7368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6053489	3L_6053489_SNP [dm3] 3L_6060389_SNP [dm6]	T	G	4.790e^-4	0.874	SYNONYMOUS_CODING CG6592 DOWNSTREAM CR45441 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	11331651	2L_11331651_SNP [dm3] 2L_11331651_SNP [dm6]	C	A	4.793e^-4	0.874	DOWNSTREAM CR44584 INTERGENIC
3L	12010094	3L_12010094_SNP [dm3] 3L_12016994_SNP [dm6]	A	G	4.799e^-4	0.874	INTRON rols
2L	5482685	2L_5482685_SNP [dm3] 2L_5482685_SNP [dm6]	G	A	4.799e^-4	0.874	INTERGENIC
3L	4633799	3L_4633799_SNP [dm3] 3L_4633799_SNP [dm6]	G	A	4.805e^-4	0.874	DOWNSTREAM CG13716 INTRON axo
3L	17583294	3L_17583294_SNP [dm3] 3L_17590194_SNP [dm6]	T	G	4.806e^-4	0.874	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11442910	2L_11442910_INS [dm3] 2L_11442910_INS [dm6]	A	ATGGCTT	4.806e^-4	0.874	INTRON salm
3L	7906015	3L_7906015_SNP [dm3] 3L_7912915_SNP [dm6]	A	C	4.809e^-4	0.874	SYNONYMOUS_CODING CG8281 UPSTREAM pbl DOWNSTREAM CG8111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	5026296	X_5026296_SNP [dm3] X_5132263_SNP [dm6]	T	C	4.815e^-4	0.874	SYNONYMOUS_CODING Rpn13R INTRON rg & 1 other
3L	3590870	3L_3590870_SNP [dm3] 3L_3590870_SNP [dm6]	T	C	4.821e^-4	0.874	INTRON Eip63E
X	12362911	X_12362911_SNP [dm3] X_12468878_SNP [dm6]	A	T	4.826e^-4	0.874	INTRON CG42258	TF binding site mE1_TFBS_HSA
3R	5736783	3R_5736783_SNP [dm3] 3R_9911061_SNP [dm6]	C	T	4.827e^-4	0.874	INTRON Glut4EF
X	14881947	X_14881947_SNP [dm3] X_14987914_SNP [dm6]	C	G	4.834e^-4	0.874	INTRON eag	TF binding site BDTNP1_TFBS_dl
3R	25393651	3R_25393651_DEL [dm3] 3R_29567929_DEL [dm6]	CTAG	C	4.845e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12985214	3L_12985214_SNP [dm3] 3L_12992114_SNP [dm6]	T	A	4.849e^-4	0.874	INTERGENIC
2R	20022097	2R_20022097_SNP [dm3] 2R_24134574_SNP [dm6]	C	T	4.851e^-4	0.874	NON_SYNONYMOUS_CODING Zfrp8 DOWNSTREAM CG4065	TF binding site mE1_TFBS_sens
2L	7490430	2L_7490430_SNP [dm3] 2L_7490430_SNP [dm6]	T	G	4.858e^-4	0.874	INTRON Ziz
3R	10941814	3R_10941814_SNP [dm3] 3R_15116092_SNP [dm6]	A	C	4.858e^-4	0.874	INTRON CG42788
3L	4091907	3L_4091907_INS [dm3] 3L_4091907_INS [dm6]	A	AA	4.858e^-4	0.874	UTR_3_PRIME CG14989 DOWNSTREAM CG14989
3R	9535593	3R_9535593_SNP [dm3] 3R_13709871_SNP [dm6]	T	G	4.859e^-4	0.874	DOWNSTREAM primo-2 & 2 others INTRON CG31469
3R	18983464	3R_18983464_SNP [dm3] 3R_23157742_SNP [dm6]	A	C	4.860e^-4	0.874	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7072774	2R_7072774_SNP [dm3] 2R_11185269_SNP [dm6]	C	T	4.862e^-4	0.874	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	18398972	2R_18398972_SNP [dm3] 2R_22511467_SNP [dm6]	C	T	4.863e^-4	0.874	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
2L	14392315	2L_14392315_SNP [dm3] 2L_14392315_SNP [dm6]	C	T	4.865e^-4	0.874	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
2L	14431755	2L_14431755_SNP [dm3] 2L_14431755_SNP [dm6]	G	A	4.875e^-4	0.874	UPSTREAM CR44732 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14432175	2R_14432175_SNP [dm3] 2R_18544670_SNP [dm6]	T	G	4.876e^-4	0.874	NON_SYNONYMOUS_CODING Rgk2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25198561	3R_25198561_SNP [dm3] 3R_29372839_SNP [dm6]	A	T	4.881e^-4	0.874	INTERGENIC
2R	15426647	2R_15426647_SNP [dm3] 2R_19539142_SNP [dm6]	A	G	4.894e^-4	0.874	INTRON sm
3R	25413609	3R_25413609_SNP [dm3] 3R_29587887_SNP [dm6]	G	A	4.905e^-4	0.874	SYNONYMOUS_CODING CG7567
2L	10775027	2L_10775027_DEL [dm3] 2L_10775027_DEL [dm6]	GATATCTTAAAGTTTTA...	C	4.907e^-4	0.874	INTRON CG31869
X	4444563	X_4444563_SNP [dm3] X_4550530_SNP [dm6]	T	C	4.910e^-4	0.874	SYNONYMOUS_CODING CG11436 DOWNSTREAM CG15912 INTRON CR32773
3R	26295175	3R_26295175_SNP [dm3] 3R_30469453_SNP [dm6]	G	C	4.911e^-4	0.874	INTRON PH4alphaEFB
2R	19268069	2R_19268069_SNP [dm3] 2R_23380546_SNP [dm6]	C	T	4.916e^-4	0.874	UPSTREAM yellow-d2 DOWNSTREAM yellow-d INTRON CG13551

Missing results

By genomic position
Variant impact
Gene name

Cuticul_7_11_C26_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results