DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.126e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01766
In_3R_K	0.03039

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	12.1902	0.0023
In_3R_K	8.349	0.0154

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2718 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	5.336e^-7	0.457	INTRON Cad87A
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	7.387e^-7	0.457	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
X	14872580	X_14872580_INS [dm3] X_14978547_INS [dm6]	T	TT	7.437e^-7	0.457	INTRON eag
2L	11465743	2L_11465743_SNP [dm3] 2L_11465743_SNP [dm6]	T	C	2.069e^-6	0.457	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	11441399	2L_11441399_SNP [dm3] 2L_11441399_SNP [dm6]	G	A	2.076e^-6	0.457	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18982582	3R_18982582_SNP [dm3] 3R_23156860_SNP [dm6]	T	C	2.336e^-6	0.457	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	11448729	2L_11448729_SNP [dm3] 2L_11448729_SNP [dm6]	T	C	2.431e^-6	0.457	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	2.489e^-6	0.457	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	2.627e^-6	0.457	INTRON Octbeta3R
3R	8572590	3R_8572590_SNP [dm3] 3R_12746868_SNP [dm6]	G	A	2.726e^-6	0.457	SYNONYMOUS_CODING beat-Vc
3R	8567206	3R_8567206_SNP [dm3] 3R_12741484_SNP [dm6]	A	T	2.837e^-6	0.457	DOWNSTREAM CG5999 & 1 other INTERGENIC
3R	5652022	3R_5652022_SNP [dm3] 3R_9826300_SNP [dm6]	G	A	2.922e^-6	0.457	UTR_3_PRIME Teh1
2L	11448829	2L_11448829_SNP [dm3] 2L_11448829_SNP [dm6]	G	A	3.930e^-6	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3L	18836900	3L_18836900_SNP [dm3] 3L_18843800_SNP [dm6]	G	A	4.847e^-6	0.489	INTRON Indy
2L	11465793	2L_11465793_SNP [dm3] 2L_11465793_SNP [dm6]	A	G	4.945e^-6	0.489	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	8288562	3R_8288562_SNP [dm3] 3R_12462840_SNP [dm6]	C	T	4.955e^-6	0.489	DOWNSTREAM CG12267 INTRON CG5608	TF binding site mE1_TFBS_inv
3R	2304603	3R_2304603_SNP [dm3] 3R_6478881_SNP [dm6]	G	T	5.122e^-6	0.489	UTR_5_PRIME CG15186
2L	11466020	2L_11466020_SNP [dm3] 2L_11466020_SNP [dm6]	A	T	5.700e^-6	0.489	INTERGENIC
2L	11633126	2L_11633126_SNP [dm3] 2L_11633126_SNP [dm6]	C	T	6.002e^-6	0.489	INTERGENIC
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	6.172e^-6	0.489	INTERGENIC
3R	8572747	3R_8572747_SNP [dm3] 3R_12747025_SNP [dm6]	C	T	6.234e^-6	0.489	NON_SYNONYMOUS_CODING beat-Vc
2L	11448202	2L_11448202_INS [dm3] 2L_11448202_INS [dm6]	A	ATAATTATACAT...	7.457e^-6	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7696878	2L_7696878_SNP [dm3] 2L_7696878_SNP [dm6]	T	A	7.493e^-6	0.489	INTRON Tep2
3R	27082889	3R_27082889_SNP [dm3] 3R_31257167_SNP [dm6]	A	G	7.594e^-6	0.489	UPSTREAM CG3669 DOWNSTREAM spn-F INTERGENIC
2L	11436539	2L_11436539_SNP [dm3] 2L_11436539_SNP [dm6]	G	A	7.737e^-6	0.489	SYNONYMOUS_CODING salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11448231	2L_11448231_SNP [dm3] 2L_11448231_SNP [dm6]	T	A	7.938e^-6	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448236	2L_11448236_SNP [dm3] 2L_11448236_SNP [dm6]	G	C	8.239e^-6	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8346633	3R_8346633_SNP [dm3] 3R_12520911_SNP [dm6]	G	A	8.362e^-6	0.489	INTRON Octbeta3R
2R	9897964	2R_9897964_SNP [dm3] 2R_14010459_SNP [dm6]	A	T	8.400e^-6	0.489	START_GAINED mam UTR_5_PRIME mam	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11519695	3L_11519695_SNP [dm3] 3L_11526595_SNP [dm6]	C	A	8.627e^-6	0.489	INTRON Mob2
3L	5706169	3L_5706169_SNP [dm3] 3L_5713069_SNP [dm6]	C	A	9.649e^-6	0.489	UPSTREAM CG44521 INTRON sif
2R	18015420	2R_18015420_SNP [dm3] 2R_22127915_SNP [dm6]	T	C	9.848e^-6	0.489	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D
3L	8032185	3L_8032185_SNP [dm3] 3L_8039085_SNP [dm6]	G	A	1.016e^-5	0.489	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6879456	X_6879456_SNP [dm3] X_6985423_SNP [dm6]	A	C	1.016e^-5	0.489	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	14872612	X_14872612_SNP [dm3] X_14978579_SNP [dm6]	G	T	1.021e^-5	0.489	INTRON eag
3R	8506260	3R_8506260_SNP [dm3] 3R_12680538_SNP [dm6]	C	T	1.036e^-5	0.489	INTRON Cyp313a4
3R	7026916	3R_7026916_SNP [dm3] 3R_11201194_SNP [dm6]	G	C	1.044e^-5	0.489	INTRON cu
3R	24698056	3R_24698056_SNP [dm3] 3R_28872334_SNP [dm6]	G	A	1.064e^-5	0.489	UPSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6879975	X_6879975_SNP [dm3] X_6985942_SNP [dm6]	A	G	1.104e^-5	0.489	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	262825	2L_262825_SNP [dm3] 2L_262825_SNP [dm6]	C	A	1.176e^-5	0.489	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 INTRON CG3645 EXON CR44219
2L	10997480	2L_10997480_MNP [dm3] 2L_10997480_MNP [dm6]	ATT	TCA	1.179e^-5	0.489	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 & 1 other INTRON CG16833
3L	10727221	3L_10727221_DEL [dm3] 3L_10734121_DEL [dm6]	CTCTA	GGT	1.264e^-5	0.489	INTERGENIC
2L	11448201	2L_11448201_SNP [dm3] 2L_11448201_SNP [dm6]	C	A	1.280e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448239	2L_11448239_SNP [dm3] 2L_11448239_SNP [dm6]	T	C	1.286e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448221	2L_11448221_SNP [dm3] 2L_11448221_SNP [dm6]	A	C	1.386e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448199	2L_11448199_SNP [dm3] 2L_11448199_SNP [dm6]	T	A	1.436e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11362462	2L_11362462_SNP [dm3] 2L_11362462_SNP [dm6]	A	C	1.436e^-5	0.489	INTRON salr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	24697851	3R_24697851_SNP [dm3] 3R_28872129_SNP [dm6]	T	C	1.487e^-5	0.489	UPSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14872616	X_14872616_SNP [dm3] X_14978583_SNP [dm6]	G	A	1.491e^-5	0.489	INTRON eag
2L	11441568	2L_11441568_SNP [dm3] 2L_11441568_SNP [dm6]	G	A	1.498e^-5	0.489	INTRON salm	TF binding site mE1_TFBS_inv
2L	11448198	2L_11448198_SNP [dm3] 2L_11448198_SNP [dm6]	T	A	1.499e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6145354	2L_6145354_SNP [dm3] 2L_6145354_SNP [dm6]	G	A	1.527e^-5	0.489	DOWNSTREAM CG13991 INTERGENIC
3R	8576551	3R_8576551_SNP [dm3] 3R_12750829_SNP [dm6]	A	G	1.547e^-5	0.489	INTRON beat-Vc
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	1.659e^-5	0.489	INTERGENIC
2L	8290987	2L_8290987_SNP [dm3] 2L_8290987_SNP [dm6]	G	T	1.710e^-5	0.489	DOWNSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_twi
X	7964388	X_7964388_INS [dm3] X_8070355_INS [dm6]	G	GAG	1.755e^-5	0.489	UTR_3_PRIME Upf2 DOWNSTREAM mys
X	18927775	X_18927775_SNP [dm3] X_19033742_SNP [dm6]	T	A	1.885e^-5	0.489	INTERGENIC
X	6879976	X_6879976_SNP [dm3] X_6985943_SNP [dm6]	T	G	1.888e^-5	0.489	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	6880047	X_6880047_SNP [dm3] X_6986014_SNP [dm6]	T	A	1.898e^-5	0.489	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	1278019	X_1278019_SNP [dm3] X_1383986_SNP [dm6]	C	G	1.898e^-5	0.489	UPSTREAM CG32813 INTRON CG32813	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	11441320	2L_11441320_INS [dm3] 2L_11441320_INS [dm6]	T	TACAGCT	1.905e^-5	0.489	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18982411	3R_18982411_DEL [dm3] 3R_23156689_DEL [dm6]	TAAAACCGCT	T	1.921e^-5	0.489	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	14872490	X_14872490_SNP [dm3] X_14978457_SNP [dm6]	A	G	1.986e^-5	0.489	INTRON eag
3R	18982358	3R_18982358_SNP [dm3] 3R_23156636_SNP [dm6]	T	A	1.992e^-5	0.489	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	1.998e^-5	0.489	INTRON salm
X	12362847	X_12362847_DEL [dm3] X_12468814_DEL [dm6]	TCATTTTAT	T	2.070e^-5	0.489	INTRON CG42258	TF binding site mE1_TFBS_HSA
3R	27145772	3R_27145772_SNP [dm3] 3R_31320050_SNP [dm6]	T	A	2.141e^-5	0.489	INTRON CG34347
2L	10028456	2L_10028456_SNP [dm3] 2L_10028456_SNP [dm6]	A	T	2.144e^-5	0.489	SYNONYMOUS_CODING CG13127
2L	9960003	2L_9960003_SNP [dm3] 2L_9960003_SNP [dm6]	T	A	2.148e^-5	0.489	UTR_3_PRIME CG5850 & 1 other DOWNSTREAM CG4658 & 1 other EXON CR44872
2R	12755139	2R_12755139_SNP [dm3] 2R_16867634_SNP [dm6]	T	C	2.151e^-5	0.489	UTR_5_PRIME Psi UPSTREAM Ef1beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_Ubx
2L	11466061	2L_11466061_SNP [dm3] 2L_11466061_SNP [dm6]	C	T	2.155e^-5	0.489	INTERGENIC
3L	9802329	3L_9802329_SNP [dm3] 3L_9809229_SNP [dm6]	G	T	2.173e^-5	0.489	DOWNSTREAM CG32052 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7568737	3L_7568737_SNP [dm3] 3L_7575637_SNP [dm6]	A	G	2.189e^-5	0.489	INTERGENIC
3R	8565677	3R_8565677_SNP [dm3] 3R_12739955_SNP [dm6]	C	T	2.249e^-5	0.489	SYNONYMOUS_CODING CG5724
2L	11465803	2L_11465803_INS [dm3] 2L_11465803_INS [dm6]	A	AA	2.270e^-5	0.489	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	18983447	3R_18983447_SNP [dm3] 3R_23157725_SNP [dm6]	G	A	2.283e^-5	0.489	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	4151720	3R_4151720_SNP [dm3] 3R_8325998_SNP [dm6]	A	C	2.327e^-5	0.489	DOWNSTREAM CG7443 INTRON Poxm
3L	18837007	3L_18837007_SNP [dm3] 3L_18843907_SNP [dm6]	A	T	2.347e^-5	0.489	INTRON Indy
3R	10279608	3R_10279608_SNP [dm3] 3R_14453886_SNP [dm6]	T	C	2.451e^-5	0.489	INTRON cv-c
2L	11466408	2L_11466408_SNP [dm3] 2L_11466408_SNP [dm6]	A	T	2.507e^-5	0.489	INTERGENIC
X	1266448	X_1266448_SNP [dm3] X_1372415_SNP [dm6]	G	A	2.546e^-5	0.489	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7790367	3R_7790367_SNP [dm3] 3R_11964645_SNP [dm6]	A	G	2.547e^-5	0.489	NON_SYNONYMOUS_CODING aur DOWNSTREAM CG12213	TF binding site mE1_TFBS_chinmo
2L	8883344	2L_8883344_SNP [dm3] 2L_8883344_SNP [dm6]	C	T	2.558e^-5	0.489	INTERGENIC
X	4444142	X_4444142_SNP [dm3] X_4550109_SNP [dm6]	A	T	2.574e^-5	0.489	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
3R	6762060	3R_6762060_SNP [dm3] 3R_10936338_SNP [dm6]	G	C	2.584e^-5	0.489	INTERGENIC
2L	11465996	2L_11465996_SNP [dm3] 2L_11465996_SNP [dm6]	T	C	2.611e^-5	0.489	INTERGENIC
3R	8565686	3R_8565686_SNP [dm3] 3R_12739964_SNP [dm6]	C	T	2.642e^-5	0.489	SYNONYMOUS_CODING CG5724
3R	27526103	3R_27526103_SNP [dm3] 3R_31700381_SNP [dm6]	A	T	2.650e^-5	0.489	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5881096	2R_5881096_SNP [dm3] 2R_9993591_SNP [dm6]	G	A	2.651e^-5	0.489	DOWNSTREAM Pka-R2 & 1 other INTERGENIC
2L	19320763	2L_19320763_SNP [dm3] 2L_19320763_SNP [dm6]	C	A	2.705e^-5	0.489	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11519697	3L_11519697_SNP [dm3] 3L_11526597_SNP [dm6]	A	G	2.744e^-5	0.489	INTRON Mob2
3R	18983465	3R_18983465_SNP [dm3] 3R_23157743_SNP [dm6]	A	T	2.752e^-5	0.489	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	14012460	2L_14012460_SNP [dm3] 2L_14012460_SNP [dm6]	A	T	2.756e^-5	0.489	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8565806	3R_8565806_SNP [dm3] 3R_12740084_SNP [dm6]	T	C	2.777e^-5	0.489	SYNONYMOUS_CODING CG5724
3L	18837004	3L_18837004_SNP [dm3] 3L_18843904_SNP [dm6]	G	C	2.799e^-5	0.489	INTRON Indy
3R	6507826	3R_6507826_SNP [dm3] 3R_10682104_SNP [dm6]	T	C	2.811e^-5	0.489	UPSTREAM CR44230 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13850430	2R_13850430_SNP [dm3] 2R_17962925_SNP [dm6]	A	G	2.857e^-5	0.489	INTERGENIC
2L	11417684	2L_11417684_SNP [dm3] 2L_11417684_SNP [dm6]	C	T	2.892e^-5	0.489	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	6879453	X_6879453_SNP [dm3] X_6985420_SNP [dm6]	A	T	2.923e^-5	0.489	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	16039960	X_16039960_SNP [dm3] X_16145927_SNP [dm6]	T	G	2.973e^-5	0.489	INTRON disco-r	TF binding site BDTNP1_TFBS_dl

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Missing results

By genomic position
Variant impact
Gene name

Cuticul_8_12_C26_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results