DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.126e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01766
In_3R_K	0.03039

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	12.1902	0.0023
In_3R_K	8.349	0.0154

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2718 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	5.336e^-7	0.457	INTRON Cad87A
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	7.387e^-7	0.457	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
X	14872580	X_14872580_INS [dm3] X_14978547_INS [dm6]	T	TT	7.437e^-7	0.457	INTRON eag
2L	11465743	2L_11465743_SNP [dm3] 2L_11465743_SNP [dm6]	T	C	2.069e^-6	0.457	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	11441399	2L_11441399_SNP [dm3] 2L_11441399_SNP [dm6]	G	A	2.076e^-6	0.457	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18982582	3R_18982582_SNP [dm3] 3R_23156860_SNP [dm6]	T	C	2.336e^-6	0.457	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	11448729	2L_11448729_SNP [dm3] 2L_11448729_SNP [dm6]	T	C	2.431e^-6	0.457	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	2.489e^-6	0.457	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	2.627e^-6	0.457	INTRON Octbeta3R
3R	8572590	3R_8572590_SNP [dm3] 3R_12746868_SNP [dm6]	G	A	2.726e^-6	0.457	SYNONYMOUS_CODING beat-Vc
3R	8567206	3R_8567206_SNP [dm3] 3R_12741484_SNP [dm6]	A	T	2.837e^-6	0.457	DOWNSTREAM CG5999 & 1 other INTERGENIC
3R	5652022	3R_5652022_SNP [dm3] 3R_9826300_SNP [dm6]	G	A	2.922e^-6	0.457	UTR_3_PRIME Teh1
2L	11448829	2L_11448829_SNP [dm3] 2L_11448829_SNP [dm6]	G	A	3.930e^-6	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3L	18836900	3L_18836900_SNP [dm3] 3L_18843800_SNP [dm6]	G	A	4.847e^-6	0.489	INTRON Indy
2L	11465793	2L_11465793_SNP [dm3] 2L_11465793_SNP [dm6]	A	G	4.945e^-6	0.489	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	8288562	3R_8288562_SNP [dm3] 3R_12462840_SNP [dm6]	C	T	4.955e^-6	0.489	DOWNSTREAM CG12267 INTRON CG5608	TF binding site mE1_TFBS_inv
3R	2304603	3R_2304603_SNP [dm3] 3R_6478881_SNP [dm6]	G	T	5.122e^-6	0.489	UTR_5_PRIME CG15186
2L	11466020	2L_11466020_SNP [dm3] 2L_11466020_SNP [dm6]	A	T	5.700e^-6	0.489	INTERGENIC
2L	11633126	2L_11633126_SNP [dm3] 2L_11633126_SNP [dm6]	C	T	6.002e^-6	0.489	INTERGENIC
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	6.172e^-6	0.489	INTERGENIC
3R	8572747	3R_8572747_SNP [dm3] 3R_12747025_SNP [dm6]	C	T	6.234e^-6	0.489	NON_SYNONYMOUS_CODING beat-Vc
2L	11448202	2L_11448202_INS [dm3] 2L_11448202_INS [dm6]	A	ATAATTATACAT...	7.457e^-6	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7696878	2L_7696878_SNP [dm3] 2L_7696878_SNP [dm6]	T	A	7.493e^-6	0.489	INTRON Tep2
3R	27082889	3R_27082889_SNP [dm3] 3R_31257167_SNP [dm6]	A	G	7.594e^-6	0.489	UPSTREAM CG3669 DOWNSTREAM spn-F INTERGENIC
2L	11436539	2L_11436539_SNP [dm3] 2L_11436539_SNP [dm6]	G	A	7.737e^-6	0.489	SYNONYMOUS_CODING salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11448231	2L_11448231_SNP [dm3] 2L_11448231_SNP [dm6]	T	A	7.938e^-6	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448236	2L_11448236_SNP [dm3] 2L_11448236_SNP [dm6]	G	C	8.239e^-6	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8346633	3R_8346633_SNP [dm3] 3R_12520911_SNP [dm6]	G	A	8.362e^-6	0.489	INTRON Octbeta3R
2R	9897964	2R_9897964_SNP [dm3] 2R_14010459_SNP [dm6]	A	T	8.400e^-6	0.489	START_GAINED mam UTR_5_PRIME mam	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11519695	3L_11519695_SNP [dm3] 3L_11526595_SNP [dm6]	C	A	8.627e^-6	0.489	INTRON Mob2
3L	5706169	3L_5706169_SNP [dm3] 3L_5713069_SNP [dm6]	C	A	9.649e^-6	0.489	UPSTREAM CG44521 INTRON sif
2R	18015420	2R_18015420_SNP [dm3] 2R_22127915_SNP [dm6]	T	C	9.848e^-6	0.489	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D
3L	8032185	3L_8032185_SNP [dm3] 3L_8039085_SNP [dm6]	G	A	1.016e^-5	0.489	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6879456	X_6879456_SNP [dm3] X_6985423_SNP [dm6]	A	C	1.016e^-5	0.489	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	14872612	X_14872612_SNP [dm3] X_14978579_SNP [dm6]	G	T	1.021e^-5	0.489	INTRON eag
3R	8506260	3R_8506260_SNP [dm3] 3R_12680538_SNP [dm6]	C	T	1.036e^-5	0.489	INTRON Cyp313a4
3R	7026916	3R_7026916_SNP [dm3] 3R_11201194_SNP [dm6]	G	C	1.044e^-5	0.489	INTRON cu
3R	24698056	3R_24698056_SNP [dm3] 3R_28872334_SNP [dm6]	G	A	1.064e^-5	0.489	UPSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6879975	X_6879975_SNP [dm3] X_6985942_SNP [dm6]	A	G	1.104e^-5	0.489	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	262825	2L_262825_SNP [dm3] 2L_262825_SNP [dm6]	C	A	1.176e^-5	0.489	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 INTRON CG3645 EXON CR44219
2L	10997480	2L_10997480_MNP [dm3] 2L_10997480_MNP [dm6]	ATT	TCA	1.179e^-5	0.489	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 & 1 other INTRON CG16833
3L	10727221	3L_10727221_DEL [dm3] 3L_10734121_DEL [dm6]	CTCTA	GGT	1.264e^-5	0.489	INTERGENIC
2L	11448201	2L_11448201_SNP [dm3] 2L_11448201_SNP [dm6]	C	A	1.280e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448239	2L_11448239_SNP [dm3] 2L_11448239_SNP [dm6]	T	C	1.286e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448221	2L_11448221_SNP [dm3] 2L_11448221_SNP [dm6]	A	C	1.386e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448199	2L_11448199_SNP [dm3] 2L_11448199_SNP [dm6]	T	A	1.436e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11362462	2L_11362462_SNP [dm3] 2L_11362462_SNP [dm6]	A	C	1.436e^-5	0.489	INTRON salr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	24697851	3R_24697851_SNP [dm3] 3R_28872129_SNP [dm6]	T	C	1.487e^-5	0.489	UPSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14872616	X_14872616_SNP [dm3] X_14978583_SNP [dm6]	G	A	1.491e^-5	0.489	INTRON eag
2L	11441568	2L_11441568_SNP [dm3] 2L_11441568_SNP [dm6]	G	A	1.498e^-5	0.489	INTRON salm	TF binding site mE1_TFBS_inv
2L	11448198	2L_11448198_SNP [dm3] 2L_11448198_SNP [dm6]	T	A	1.499e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6145354	2L_6145354_SNP [dm3] 2L_6145354_SNP [dm6]	G	A	1.527e^-5	0.489	DOWNSTREAM CG13991 INTERGENIC
3R	8576551	3R_8576551_SNP [dm3] 3R_12750829_SNP [dm6]	A	G	1.547e^-5	0.489	INTRON beat-Vc
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	1.659e^-5	0.489	INTERGENIC
2L	8290987	2L_8290987_SNP [dm3] 2L_8290987_SNP [dm6]	G	T	1.710e^-5	0.489	DOWNSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_twi
X	7964388	X_7964388_INS [dm3] X_8070355_INS [dm6]	G	GAG	1.755e^-5	0.489	UTR_3_PRIME Upf2 DOWNSTREAM mys
X	18927775	X_18927775_SNP [dm3] X_19033742_SNP [dm6]	T	A	1.885e^-5	0.489	INTERGENIC
X	6879976	X_6879976_SNP [dm3] X_6985943_SNP [dm6]	T	G	1.888e^-5	0.489	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	6880047	X_6880047_SNP [dm3] X_6986014_SNP [dm6]	T	A	1.898e^-5	0.489	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	1278019	X_1278019_SNP [dm3] X_1383986_SNP [dm6]	C	G	1.898e^-5	0.489	UPSTREAM CG32813 INTRON CG32813	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	11441320	2L_11441320_INS [dm3] 2L_11441320_INS [dm6]	T	TACAGCT	1.905e^-5	0.489	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18982411	3R_18982411_DEL [dm3] 3R_23156689_DEL [dm6]	TAAAACCGCT	T	1.921e^-5	0.489	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	14872490	X_14872490_SNP [dm3] X_14978457_SNP [dm6]	A	G	1.986e^-5	0.489	INTRON eag
3R	18982358	3R_18982358_SNP [dm3] 3R_23156636_SNP [dm6]	T	A	1.992e^-5	0.489	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	1.998e^-5	0.489	INTRON salm
X	12362847	X_12362847_DEL [dm3] X_12468814_DEL [dm6]	TCATTTTAT	T	2.070e^-5	0.489	INTRON CG42258	TF binding site mE1_TFBS_HSA
3R	27145772	3R_27145772_SNP [dm3] 3R_31320050_SNP [dm6]	T	A	2.141e^-5	0.489	INTRON CG34347
2L	10028456	2L_10028456_SNP [dm3] 2L_10028456_SNP [dm6]	A	T	2.144e^-5	0.489	SYNONYMOUS_CODING CG13127
2L	9960003	2L_9960003_SNP [dm3] 2L_9960003_SNP [dm6]	T	A	2.148e^-5	0.489	UTR_3_PRIME CG5850 & 1 other DOWNSTREAM CG4658 & 1 other EXON CR44872
2R	12755139	2R_12755139_SNP [dm3] 2R_16867634_SNP [dm6]	T	C	2.151e^-5	0.489	UTR_5_PRIME Psi UPSTREAM Ef1beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_Ubx
2L	11466061	2L_11466061_SNP [dm3] 2L_11466061_SNP [dm6]	C	T	2.155e^-5	0.489	INTERGENIC
3L	9802329	3L_9802329_SNP [dm3] 3L_9809229_SNP [dm6]	G	T	2.173e^-5	0.489	DOWNSTREAM CG32052 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7568737	3L_7568737_SNP [dm3] 3L_7575637_SNP [dm6]	A	G	2.189e^-5	0.489	INTERGENIC
3R	8565677	3R_8565677_SNP [dm3] 3R_12739955_SNP [dm6]	C	T	2.249e^-5	0.489	SYNONYMOUS_CODING CG5724
2L	11465803	2L_11465803_INS [dm3] 2L_11465803_INS [dm6]	A	AA	2.270e^-5	0.489	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	18983447	3R_18983447_SNP [dm3] 3R_23157725_SNP [dm6]	G	A	2.283e^-5	0.489	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	4151720	3R_4151720_SNP [dm3] 3R_8325998_SNP [dm6]	A	C	2.327e^-5	0.489	DOWNSTREAM CG7443 INTRON Poxm
3L	18837007	3L_18837007_SNP [dm3] 3L_18843907_SNP [dm6]	A	T	2.347e^-5	0.489	INTRON Indy
3R	10279608	3R_10279608_SNP [dm3] 3R_14453886_SNP [dm6]	T	C	2.451e^-5	0.489	INTRON cv-c
2L	11466408	2L_11466408_SNP [dm3] 2L_11466408_SNP [dm6]	A	T	2.507e^-5	0.489	INTERGENIC
X	1266448	X_1266448_SNP [dm3] X_1372415_SNP [dm6]	G	A	2.546e^-5	0.489	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7790367	3R_7790367_SNP [dm3] 3R_11964645_SNP [dm6]	A	G	2.547e^-5	0.489	NON_SYNONYMOUS_CODING aur DOWNSTREAM CG12213	TF binding site mE1_TFBS_chinmo
2L	8883344	2L_8883344_SNP [dm3] 2L_8883344_SNP [dm6]	C	T	2.558e^-5	0.489	INTERGENIC
X	4444142	X_4444142_SNP [dm3] X_4550109_SNP [dm6]	A	T	2.574e^-5	0.489	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
3R	6762060	3R_6762060_SNP [dm3] 3R_10936338_SNP [dm6]	G	C	2.584e^-5	0.489	INTERGENIC
2L	11465996	2L_11465996_SNP [dm3] 2L_11465996_SNP [dm6]	T	C	2.611e^-5	0.489	INTERGENIC
3R	8565686	3R_8565686_SNP [dm3] 3R_12739964_SNP [dm6]	C	T	2.642e^-5	0.489	SYNONYMOUS_CODING CG5724
3R	27526103	3R_27526103_SNP [dm3] 3R_31700381_SNP [dm6]	A	T	2.650e^-5	0.489	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5881096	2R_5881096_SNP [dm3] 2R_9993591_SNP [dm6]	G	A	2.651e^-5	0.489	DOWNSTREAM Pka-R2 & 1 other INTERGENIC
2L	19320763	2L_19320763_SNP [dm3] 2L_19320763_SNP [dm6]	C	A	2.705e^-5	0.489	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11519697	3L_11519697_SNP [dm3] 3L_11526597_SNP [dm6]	A	G	2.744e^-5	0.489	INTRON Mob2
3R	18983465	3R_18983465_SNP [dm3] 3R_23157743_SNP [dm6]	A	T	2.752e^-5	0.489	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	14012460	2L_14012460_SNP [dm3] 2L_14012460_SNP [dm6]	A	T	2.756e^-5	0.489	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8565806	3R_8565806_SNP [dm3] 3R_12740084_SNP [dm6]	T	C	2.777e^-5	0.489	SYNONYMOUS_CODING CG5724
3L	18837004	3L_18837004_SNP [dm3] 3L_18843904_SNP [dm6]	G	C	2.799e^-5	0.489	INTRON Indy
3R	6507826	3R_6507826_SNP [dm3] 3R_10682104_SNP [dm6]	T	C	2.811e^-5	0.489	UPSTREAM CR44230 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13850430	2R_13850430_SNP [dm3] 2R_17962925_SNP [dm6]	A	G	2.857e^-5	0.489	INTERGENIC
2L	11417684	2L_11417684_SNP [dm3] 2L_11417684_SNP [dm6]	C	T	2.892e^-5	0.489	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	6879453	X_6879453_SNP [dm3] X_6985420_SNP [dm6]	A	T	2.923e^-5	0.489	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	16039960	X_16039960_SNP [dm3] X_16145927_SNP [dm6]	T	G	2.973e^-5	0.489	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
3R	7796214	3R_7796214_SNP [dm3] 3R_11970492_SNP [dm6]	A	G	3.005e^-5	0.489	SYNONYMOUS_CODING GC1
3L	16330542	3L_16330542_SNP [dm3] 3L_16337442_SNP [dm6]	G	A	3.049e^-5	0.489	INTERGENIC
2L	21764585	2L_21764585_SNP [dm3] 2L_21764585_SNP [dm6]	G	A	3.123e^-5	0.489	INTRON CG31612
X	9666222	X_9666222_SNP [dm3] X_9772189_SNP [dm6]	A	G	3.155e^-5	0.489	INTERGENIC
2L	11447487	2L_11447487_SNP [dm3] 2L_11447487_SNP [dm6]	G	A	3.166e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8366548	3R_8366548_SNP [dm3] 3R_12540826_SNP [dm6]	G	A	3.183e^-5	0.489	INTRON Octbeta3R
2L	11441288	2L_11441288_SNP [dm3] 2L_11441288_SNP [dm6]	C	T	3.188e^-5	0.489	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	18836793	3L_18836793_SNP [dm3] 3L_18843693_SNP [dm6]	A	C	3.217e^-5	0.489	DOWNSTREAM CR32027 INTRON Indy
3R	9086155	3R_9086155_SNP [dm3] 3R_13260433_SNP [dm6]	C	G	3.285e^-5	0.489	START_GAINED CG11686 UTR_5_PRIME CG11686 UPSTREAM Ace INTRON CG11686
2L	14784057	2L_14784057_SNP [dm3] 2L_14784057_SNP [dm6]	C	T	3.329e^-5	0.489	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11417675	2L_11417675_SNP [dm3] 2L_11417675_SNP [dm6]	T	G	3.391e^-5	0.489	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2715961	3L_2715961_SNP [dm3] 3L_2715961_SNP [dm6]	T	G	3.421e^-5	0.489	INTERGENIC
3L	9425183	3L_9425183_SNP [dm3] 3L_9432083_SNP [dm6]	A	G	3.443e^-5	0.489	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11519718	3L_11519718_SNP [dm3] 3L_11526618_SNP [dm6]	T	A	3.446e^-5	0.489	INTRON Mob2
2L	8291010	2L_8291010_SNP [dm3] 2L_8291010_SNP [dm6]	G	T	3.477e^-5	0.489	DOWNSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_twi
3R	18983464	3R_18983464_SNP [dm3] 3R_23157742_SNP [dm6]	A	C	3.497e^-5	0.489	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18982377	3R_18982377_SNP [dm3] 3R_23156655_SNP [dm6]	C	T	3.516e^-5	0.489	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	9666557	X_9666557_SNP [dm3] X_9772524_SNP [dm6]	G	C	3.537e^-5	0.489	INTERGENIC
2L	11466031	2L_11466031_SNP [dm3] 2L_11466031_SNP [dm6]	C	T	3.621e^-5	0.489	INTERGENIC
X	6879827	X_6879827_SNP [dm3] X_6985794_SNP [dm6]	G	A	3.642e^-5	0.489	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	16330519	3L_16330519_SNP [dm3] 3L_16337419_SNP [dm6]	T	A	3.644e^-5	0.489	INTERGENIC
3R	8379793	3R_8379793_SNP [dm3] 3R_12554071_SNP [dm6]	C	T	3.656e^-5	0.489	INTRON Octbeta2R
3R	18983515	3R_18983515_SNP [dm3] 3R_23157793_SNP [dm6]	T	C	3.672e^-5	0.489	SYNONYMOUS_CODING unk DOWNSTREAM VhaAC39-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2928942	2L_2928942_SNP [dm3] 2L_2928942_SNP [dm6]	G	C	3.702e^-5	0.489	INTRON lilli
2R	18382972	2R_18382972_SNP [dm3] 2R_22495467_SNP [dm6]	T	C	3.707e^-5	0.489	UTR_3_PRIME px
3R	14145237	3R_14145237_SNP [dm3] 3R_18319515_SNP [dm6]	T	A	3.755e^-5	0.489	INTRON CG31235
X	9666178	X_9666178_SNP [dm3] X_9772145_SNP [dm6]	T	G	3.757e^-5	0.489	INTERGENIC
2R	9897963	2R_9897963_SNP [dm3] 2R_14010458_SNP [dm6]	T	C	3.810e^-5	0.489	UTR_5_PRIME mam	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17089422	3L_17089422_SNP [dm3] 3L_17096322_SNP [dm6]	C	G	3.844e^-5	0.489	INTRON Rbp6
X	1279150	X_1279150_SNP [dm3] X_1385117_SNP [dm6]	G	C	3.892e^-5	0.489	UPSTREAM CG32813 INTRON CG32813	TF binding site mE1_TFBS_chinmo
X	1269878	X_1269878_SNP [dm3] X_1375845_SNP [dm6]	T	C	3.934e^-5	0.489	UTR_5_PRIME AMPKalpha DOWNSTREAM ssx INTRON AMPKalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11784409	2L_11784409_SNP [dm3] 2L_11784409_SNP [dm6]	T	C	3.944e^-5	0.489	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5722463	2R_5722463_SNP [dm3] 2R_9834958_SNP [dm6]	A	C	3.964e^-5	0.489	INTRON hebe
2L	14012555	2L_14012555_SNP [dm3] 2L_14012555_SNP [dm6]	T	C	3.971e^-5	0.489	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11193602	2L_11193602_SNP [dm3] 2L_11193602_SNP [dm6]	T	G	4.049e^-5	0.489	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da
2L	11442989	2L_11442989_SNP [dm3] 2L_11442989_SNP [dm6]	T	C	4.072e^-5	0.489	INTRON salm
3R	5736783	3R_5736783_SNP [dm3] 3R_9911061_SNP [dm6]	C	T	4.091e^-5	0.489	INTRON Glut4EF
2L	11362550	2L_11362550_SNP [dm3] 2L_11362550_SNP [dm6]	A	T	4.106e^-5	0.489	INTRON salr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	11448182	2L_11448182_SNP [dm3] 2L_11448182_SNP [dm6]	G	A	4.146e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15232346	2L_15232346_SNP [dm3] 2L_15232346_SNP [dm6]	G	A	4.149e^-5	0.489	INTRON ZnT35C	TF binding site mE1_TFBS_cad
3R	8994436	3R_8994436_SNP [dm3] 3R_13168714_SNP [dm6]	G	A	4.152e^-5	0.489	INTERGENIC
3R	6857725	3R_6857725_SNP [dm3] 3R_11032003_SNP [dm6]	A	G	4.158e^-5	0.489	INTRON CG34114
3R	8573696	3R_8573696_SNP [dm3] 3R_12747974_SNP [dm6]	G	A	4.164e^-5	0.489	INTRON beat-Vc
3R	18982520	3R_18982520_SNP [dm3] 3R_23156798_SNP [dm6]	A	G	4.166e^-5	0.489	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	11447058	2L_11447058_SNP [dm3] 2L_11447058_SNP [dm6]	C	A	4.187e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16330526	3L_16330526_INS [dm3] 3L_16337426_INS [dm6]	A	AAG	4.205e^-5	0.489	INTERGENIC
X	16908524	X_16908524_SNP [dm3] X_17014491_SNP [dm6]	T	A	4.212e^-5	0.489	INTRON CG45002
2R	5707583	2R_5707583_SNP [dm3] 2R_9820078_SNP [dm6]	A	G	4.241e^-5	0.489	UPSTREAM CG34033 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2L	8883300	2L_8883300_SNP [dm3] 2L_8883300_SNP [dm6]	G	A	4.290e^-5	0.489	INTERGENIC
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	4.362e^-5	0.489	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4009835	2L_4009835_SNP [dm3] 2L_4009835_SNP [dm6]	A	G	4.425e^-5	0.489	DOWNSTREAM CG43774 INTERGENIC
X	19555301	X_19555301_INS [dm3] X_19661268_INS [dm6]	G	GGTG	4.431e^-5	0.489	CODON_INSERTION CG14223	TF binding site mE1_TFBS_chinmo
3R	6848243	3R_6848243_INS [dm3] 3R_11022521_INS [dm6]	A	AAC	4.474e^-5	0.489	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	8344006	3R_8344006_SNP [dm3] 3R_12518284_SNP [dm6]	A	G	4.497e^-5	0.489	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	8579630	3R_8579630_SNP [dm3] 3R_12753908_SNP [dm6]	G	A	4.498e^-5	0.489	INTRON beat-Vc
2L	8291037	2L_8291037_SNP [dm3] 2L_8291037_SNP [dm6]	C	A	4.556e^-5	0.489	DOWNSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_twi
2L	11417676	2L_11417676_SNP [dm3] 2L_11417676_SNP [dm6]	T	C	4.569e^-5	0.489	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8460032	3R_8460032_SNP [dm3] 3R_12634310_SNP [dm6]	C	T	4.579e^-5	0.489	SYNONYMOUS_CODING CG18530 UPSTREAM CG11598	TF binding site mE1_TFBS_inv
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	4.611e^-5	0.489	INTRON salm
2R	18028892	2R_18028892_SNP [dm3] 2R_22141387_SNP [dm6]	G	A	4.614e^-5	0.489	DOWNSTREAM gom INTRON a
X	19430764	X_19430764_SNP [dm3] X_19536731_SNP [dm6]	C	A	4.645e^-5	0.489	INTRON CG32532
3R	8707874	3R_8707874_SNP [dm3] 3R_12882152_SNP [dm6]	T	C	4.675e^-5	0.489	INTERGENIC
3R	8337236	3R_8337236_SNP [dm3] 3R_12511514_SNP [dm6]	C	T	4.715e^-5	0.489	DOWNSTREAM Octbeta3R & 1 other INTERGENIC
3R	8885665	3R_8885665_SNP [dm3] 3R_13059943_SNP [dm6]	A	G	4.767e^-5	0.489	INTRON sim	TF binding site BDTNP1_TFBS_prd
2R	5706048	2R_5706048_SNP [dm3] 2R_9818543_SNP [dm6]	A	T	4.770e^-5	0.489	DOWNSTREAM lectin-46Ca INTRON CG1648
3R	13374887	3R_13374887_SNP [dm3] 3R_17549165_SNP [dm6]	T	C	4.832e^-5	0.489	INTERGENIC
3L	14441441	3L_14441441_SNP [dm3] 3L_14448341_SNP [dm6]	A	T	4.841e^-5	0.489	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	7489527	3L_7489527_SNP [dm3] 3L_7496427_SNP [dm6]	C	T	4.919e^-5	0.489	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
2R	19244649	2R_19244649_SNP [dm3] 2R_23357126_SNP [dm6]	G	T	4.933e^-5	0.489	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3590835	3L_3590835_SNP [dm3] 3L_3590835_SNP [dm6]	T	G	4.953e^-5	0.489	INTRON Eip63E
3L	11039110	3L_11039110_SNP [dm3] 3L_11046010_SNP [dm6]	A	G	4.957e^-5	0.489	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	3812783	2R_3812783_SNP [dm3] 2R_7925278_SNP [dm6]	T	A	4.977e^-5	0.489	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	7489481	3L_7489481_DEL [dm3] 3L_7496381_DEL [dm6]	TT	T	4.989e^-5	0.489	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
3R	8122231	3R_8122231_SNP [dm3] 3R_12296509_SNP [dm6]	C	A	5.001e^-5	0.489	DOWNSTREAM svp INTRON svp
3R	6564639	3R_6564639_INS [dm3] 3R_10738917_INS [dm6]	T	TAT	5.041e^-5	0.489	INTRON TkR86C	TF binding site mE1_TFBS_cad
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	5.045e^-5	0.489	INTRON salm
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	5.056e^-5	0.489	INTRON Cad87A
3R	7801608	3R_7801608_SNP [dm3] 3R_11975886_SNP [dm6]	A	T	5.091e^-5	0.489	UPSTREAM Tango9 INTRON CG10005	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5706229	3L_5706229_SNP [dm3] 3L_5713129_SNP [dm6]	A	T	5.094e^-5	0.489	UPSTREAM CG44521 INTRON sif
2L	263485	2L_263485_SNP [dm3] 2L_263485_SNP [dm6]	A	C	5.120e^-5	0.489	UTR_3_PRIME CG17075 DOWNSTREAM CR44219 INTRON CG3645	TF binding site mE1_TFBS_cad
2L	13284458	2L_13284458_SNP [dm3] 2L_13284458_SNP [dm6]	T	G	5.125e^-5	0.489	UTR_3_PRIME Drep-4 UPSTREAM CR44083 DOWNSTREAM CG44085
3R	6573765	3R_6573765_SNP [dm3] 3R_10748043_SNP [dm6]	C	A	5.131e^-5	0.489	INTRON TkR86C
3R	8605216	3R_8605216_SNP [dm3] 3R_12779494_SNP [dm6]	G	C	5.160e^-5	0.489	INTRON beat-Vc
3R	5529882	3R_5529882_SNP [dm3] 3R_9704160_SNP [dm6]	T	G	5.175e^-5	0.489	INTRON Unc-115a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	1266463	X_1266463_SNP [dm3] X_1372430_SNP [dm6]	C	T	5.320e^-5	0.489	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5438426	3R_5438426_SNP [dm3] 3R_9612704_SNP [dm6]	G	A	5.342e^-5	0.489	INTRON CG8312
2R	12120427	2R_12120427_SNP [dm3] 2R_16232922_SNP [dm6]	C	T	5.393e^-5	0.489	INTRON CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4009864	2L_4009864_SNP [dm3] 2L_4009864_SNP [dm6]	T	C	5.403e^-5	0.489	DOWNSTREAM CG43774 INTERGENIC
2L	11465971	2L_11465971_DEL [dm3] 2L_11465971_DEL [dm6]	TAATAAGTCT	T	5.412e^-5	0.489	INTERGENIC
3R	8863660	3R_8863660_SNP [dm3] 3R_13037938_SNP [dm6]	T	C	5.421e^-5	0.489	UTR_3_PRIME ry UPSTREAM CG11668
2R	13600637	2R_13600637_SNP [dm3] 2R_17713132_SNP [dm6]	C	G	5.447e^-5	0.489	INTRON CG6424	TF binding site mE1_TFBS_sbb
2R	19249905	2R_19249905_SNP [dm3] 2R_23362382_SNP [dm6]	C	T	5.460e^-5	0.489	SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9666497	X_9666497_SNP [dm3] X_9772464_SNP [dm6]	A	G	5.510e^-5	0.489	INTERGENIC
3R	6856799	3R_6856799_SNP [dm3] 3R_11031077_SNP [dm6]	G	T	5.543e^-5	0.489	INTRON CG34114
X	12013152	X_12013152_SNP [dm3] X_12119119_SNP [dm6]	A	G	5.563e^-5	0.489	INTRON Ten-a
2R	10998597	2R_10998597_SNP [dm3] 2R_15111092_SNP [dm6]	T	C	5.571e^-5	0.489	INTERGENIC
X	1266464	X_1266464_SNP [dm3] X_1372431_SNP [dm6]	T	C	5.594e^-5	0.489	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9830180	X_9830180_SNP [dm3] X_9936147_SNP [dm6]	G	A	5.598e^-5	0.489	INTERGENIC
2L	11442729	2L_11442729_SNP [dm3] 2L_11442729_SNP [dm6]	C	T	5.606e^-5	0.489	INTRON salm
3R	8578351	3R_8578351_SNP [dm3] 3R_12752629_SNP [dm6]	G	A	5.620e^-5	0.489	SPLICE_SITE_REGION beat-Vc INTRON beat-Vc
2R	5829932	2R_5829932_SNP [dm3] 2R_9942427_SNP [dm6]	A	T	5.644e^-5	0.489	INTRON Mef2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
X	9666820	X_9666820_SNP [dm3] X_9772787_SNP [dm6]	T	G	5.647e^-5	0.489	INTERGENIC
2R	10998545	2R_10998545_SNP [dm3] 2R_15111040_SNP [dm6]	C	G	5.672e^-5	0.489	INTERGENIC
2R	10998561	2R_10998561_INS [dm3] 2R_15111056_INS [dm6]	T	TCTATC	5.672e^-5	0.489	INTERGENIC
X	12362948	X_12362948_SNP [dm3] X_12468915_SNP [dm6]	C	T	5.684e^-5	0.489	INTRON CG42258	TF binding site mE1_TFBS_HSA
X	9666830	X_9666830_SNP [dm3] X_9772797_SNP [dm6]	G	A	5.702e^-5	0.489	INTERGENIC
3R	7745581	3R_7745581_SNP [dm3] 3R_11919859_SNP [dm6]	G	A	5.704e^-5	0.489	INTRON Cad87A
3L	18836723	3L_18836723_SNP [dm3] 3L_18843623_SNP [dm6]	C	G	5.714e^-5	0.489	DOWNSTREAM CR32027 INTRON Indy
3L	18836662	3L_18836662_SNP [dm3] 3L_18843562_SNP [dm6]	G	A	5.727e^-5	0.489	DOWNSTREAM CR32027 INTRON Indy
3R	6567987	3R_6567987_SNP [dm3] 3R_10742265_SNP [dm6]	C	T	5.735e^-5	0.489	INTRON TkR86C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12013129	X_12013129_INS [dm3] X_12119096_INS [dm6]	T	TTTTAGGCCCCT...	5.783e^-5	0.489	INTRON Ten-a
3R	20906722	3R_20906722_SNP [dm3] 3R_25081000_SNP [dm6]	G	T	5.807e^-5	0.489	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10998591	2R_10998591_SNP [dm3] 2R_15111086_SNP [dm6]	G	T	5.809e^-5	0.489	INTERGENIC
2R	10998602	2R_10998602_SNP [dm3] 2R_15111097_SNP [dm6]	A	T	5.809e^-5	0.489	INTERGENIC
2L	9146166	2L_9146166_SNP [dm3] 2L_9146166_SNP [dm6]	T	C	5.815e^-5	0.489	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16161356	2L_16161356_INS [dm3] 2L_16161356_INS [dm6]	A	ATTTGGTGGCTTA...	5.907e^-5	0.489	INTERGENIC
3R	8622699	3R_8622699_SNP [dm3] 3R_12796977_SNP [dm6]	T	C	5.926e^-5	0.489	INTERGENIC
3L	16330524	3L_16330524_SNP [dm3] 3L_16337424_SNP [dm6]	A	T	5.948e^-5	0.489	INTERGENIC
3L	14205927	3L_14205927_SNP [dm3] 3L_14212827_SNP [dm6]	A	T	5.966e^-5	0.489	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	8618753	3R_8618753_SNP [dm3] 3R_12793031_SNP [dm6]	G	C	5.971e^-5	0.489	INTERGENIC
3R	6574923	3R_6574923_SNP [dm3] 3R_10749201_SNP [dm6]	G	T	5.995e^-5	0.489	INTRON TkR86C
3R	18982340	3R_18982340_SNP [dm3] 3R_23156618_SNP [dm6]	G	T	6.040e^-5	0.489	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	1266374	X_1266374_SNP [dm3] X_1372341_SNP [dm6]	G	C	6.085e^-5	0.489	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6737267	3L_6737267_SNP [dm3] 3L_6744167_SNP [dm6]	T	C	6.109e^-5	0.489	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2R	18015452	2R_18015452_SNP [dm3] 2R_22127947_SNP [dm6]	A	G	6.226e^-5	0.489	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad
3R	14144913	3R_14144913_SNP [dm3] 3R_18319191_SNP [dm6]	G	C	6.235e^-5	0.489	INTRON CG31235
X	9666279	X_9666279_SNP [dm3] X_9772246_SNP [dm6]	C	T	6.274e^-5	0.489	INTERGENIC
3L	3800878	3L_3800878_SNP [dm3] 3L_3800878_SNP [dm6]	T	A	6.277e^-5	0.489	START_GAINED CG32264 UTR_5_PRIME CG32264 INTRON CG32264
3R	8379789	3R_8379789_SNP [dm3] 3R_12554067_SNP [dm6]	C	T	6.333e^-5	0.489	INTRON Octbeta2R
2R	11604491	2R_11604491_SNP [dm3] 2R_15716986_SNP [dm6]	T	A	6.339e^-5	0.489	INTERGENIC
3L	16330525	3L_16330525_SNP [dm3] 3L_16337425_SNP [dm6]	T	A	6.410e^-5	0.489	INTERGENIC
2L	13707344	2L_13707344_SNP [dm3] 2L_13707344_SNP [dm6]	G	A	6.462e^-5	0.489	UPSTREAM CG7311 INTRON CG31814
2R	10998606	2R_10998606_SNP [dm3] 2R_15111101_SNP [dm6]	A	C	6.477e^-5	0.489	INTERGENIC
3R	8651610	3R_8651610_DEL [dm3] 3R_12825888_DEL [dm6]	TCGAAATCGCCGGCAGACGT...	T	6.480e^-5	0.489	INTERGENIC
3L	14441456	3L_14441456_SNP [dm3] 3L_14448356_SNP [dm6]	G	T	6.487e^-5	0.489	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	11426405	2L_11426405_SNP [dm3] 2L_11426405_SNP [dm6]	A	G	6.597e^-5	0.489	INTERGENIC
2L	16045056	2L_16045056_SNP [dm3] 2L_16045056_SNP [dm6]	C	A	6.606e^-5	0.489	INTRON BicC & 1 other
3L	1590943	3L_1590943_SNP [dm3] 3L_1590943_SNP [dm6]	T	C	6.612e^-5	0.489	INTRON CG13917
2L	11362554	2L_11362554_SNP [dm3] 2L_11362554_SNP [dm6]	T	A	6.614e^-5	0.489	INTRON salr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	5719369	2R_5719369_SNP [dm3] 2R_9831864_SNP [dm6]	A	C	6.619e^-5	0.489	UPSTREAM hebe INTRON hebe
2L	2785394	2L_2785394_SNP [dm3] 2L_2785394_SNP [dm6]	T	A	6.647e^-5	0.489	UTR_3_PRIME Syt1 INTRON Syt1
2R	10998557	2R_10998557_SNP [dm3] 2R_15111052_SNP [dm6]	A	T	6.683e^-5	0.489	INTERGENIC
2R	12791379	2R_12791379_SNP [dm3] 2R_16903874_SNP [dm6]	A	C	6.727e^-5	0.489	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8410480	2R_8410480_SNP [dm3] 2R_12522975_SNP [dm6]	G	T	6.730e^-5	0.489	DOWNSTREAM CG33632 INTERGENIC	transposable element FlyBase
2R	8410494	2R_8410494_SNP [dm3] 2R_12522989_SNP [dm6]	G	A	6.730e^-5	0.489	DOWNSTREAM CG33632 INTERGENIC	transposable element FlyBase
3R	20913489	3R_20913489_SNP [dm3] 3R_25087767_SNP [dm6]	G	C	6.776e^-5	0.489	INTERGENIC
2R	5882805	2R_5882805_SNP [dm3] 2R_9995300_SNP [dm6]	G	A	6.779e^-5	0.489	UTR_3_PRIME Pka-R2 DOWNSTREAM Pka-R2
X	9666284	X_9666284_SNP [dm3] X_9772251_SNP [dm6]	G	A	6.784e^-5	0.489	INTERGENIC
3L	2044248	3L_2044248_SNP [dm3] 3L_2044248_SNP [dm6]	C	T	6.788e^-5	0.489	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1591434	3L_1591434_SNP [dm3] 3L_1591434_SNP [dm6]	C	A	6.818e^-5	0.489	INTRON CG13917
3R	8976991	3R_8976991_SNP [dm3] 3R_13151269_SNP [dm6]	A	G	6.820e^-5	0.489	INTRON timeout & 2 others
3L	4355966	3L_4355966_SNP [dm3] 3L_4355966_SNP [dm6]	C	T	6.833e^-5	0.489	INTRON Cip4
2L	11443197	2L_11443197_SNP [dm3] 2L_11443197_SNP [dm6]	G	A	6.837e^-5	0.489	INTRON salm
2L	11442707	2L_11442707_SNP [dm3] 2L_11442707_SNP [dm6]	A	C	6.846e^-5	0.489	INTRON salm
2L	5860768	2L_5860768_SNP [dm3] 2L_5860768_SNP [dm6]	T	C	6.849e^-5	0.489	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8555320	3R_8555320_SNP [dm3] 3R_12729598_SNP [dm6]	T	A	6.860e^-5	0.489	INTERGENIC
3L	19171927	3L_19171927_SNP [dm3] 3L_19178827_SNP [dm6]	T	G	6.882e^-5	0.489	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14205797	3L_14205797_SNP [dm3] 3L_14212697_SNP [dm6]	A	T	6.896e^-5	0.489	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	11197137	2L_11197137_SNP [dm3] 2L_11197137_SNP [dm6]	T	C	6.906e^-5	0.489	INTRON Ca-beta
3R	22115699	3R_22115699_SNP [dm3] 3R_26289977_SNP [dm6]	A	G	6.916e^-5	0.489	INTERGENIC
3R	7757160	3R_7757160_SNP [dm3] 3R_11931438_SNP [dm6]	A	G	6.948e^-5	0.489	NON_SYNONYMOUS_CODING CG14731 INTRON Cad87A
2L	7210991	2L_7210991_SNP [dm3] 2L_7210991_SNP [dm6]	T	A	6.969e^-5	0.489	INTRON CG13784
3L	7489554	3L_7489554_DEL [dm3] 3L_7496454_DEL [dm6]	GG	G	7.010e^-5	0.489	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
2L	9982627	2L_9982627_SNP [dm3] 2L_9982627_SNP [dm6]	T	A	7.024e^-5	0.489	INTERGENIC	regulatory region REDfly_CRMs
3L	1593572	3L_1593572_SNP [dm3] 3L_1593572_SNP [dm6]	G	A	7.039e^-5	0.489	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5754494	2R_5754494_SNP [dm3] 2R_9866989_SNP [dm6]	T	G	7.058e^-5	0.489	DOWNSTREAM Ntmt INTRON cbx
X	9666289	X_9666289_SNP [dm3] X_9772256_SNP [dm6]	T	C	7.089e^-5	0.489	INTERGENIC
2L	11466089	2L_11466089_SNP [dm3] 2L_11466089_SNP [dm6]	T	G	7.102e^-5	0.489	INTERGENIC
X	12168847	X_12168847_SNP [dm3] X_12274814_SNP [dm6]	T	G	7.124e^-5	0.489	NON_SYNONYMOUS_CODING CG45603 INTRON Ten-a
3L	3802410	3L_3802410_SNP [dm3] 3L_3802410_SNP [dm6]	G	T	7.133e^-5	0.489	INTRON CG32264
2L	12249238	2L_12249238_SNP [dm3] 2L_12249238_SNP [dm6]	T	C	7.159e^-5	0.489	INTRON aret
3R	22115690	3R_22115690_SNP [dm3] 3R_26289968_SNP [dm6]	T	A	7.162e^-5	0.489	INTERGENIC
3R	8605215	3R_8605215_SNP [dm3] 3R_12779493_SNP [dm6]	T	C	7.208e^-5	0.489	INTRON beat-Vc
3R	7133756	3R_7133756_SNP [dm3] 3R_11308034_SNP [dm6]	G	T	7.302e^-5	0.489	INTERGENIC
3L	2716165	3L_2716165_SNP [dm3] 3L_2716165_SNP [dm6]	A	T	7.312e^-5	0.489	INTERGENIC
3R	9086132	3R_9086132_SNP [dm3] 3R_13260410_SNP [dm6]	G	T	7.339e^-5	0.489	UTR_5_PRIME CG11686 UPSTREAM Ace
2R	3812897	2R_3812897_SNP [dm3] 2R_7925392_SNP [dm6]	G	T	7.351e^-5	0.489	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	14451885	3R_14451885_SNP [dm3] 3R_18626163_SNP [dm6]	C	T	7.355e^-5	0.489	INTRON qin
2L	14784018	2L_14784018_SNP [dm3] 2L_14784018_SNP [dm6]	C	T	7.393e^-5	0.489	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5755269	2R_5755269_SNP [dm3] 2R_9867764_SNP [dm6]	C	A	7.398e^-5	0.489	UPSTREAM CR45138 INTRON cbx
2R	5755395	2R_5755395_SNP [dm3] 2R_9867890_SNP [dm6]	T	C	7.398e^-5	0.489	UPSTREAM CR45138 INTRON cbx
2L	14788377	2L_14788377_SNP [dm3] 2L_14788377_SNP [dm6]	G	A	7.409e^-5	0.489	INTERGENIC
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	7.409e^-5	0.489	SYNONYMOUS_CODING msps
3R	8609403	3R_8609403_SNP [dm3] 3R_12783681_SNP [dm6]	A	T	7.517e^-5	0.489	UPSTREAM beat-Vc INTERGENIC
3L	18837619	3L_18837619_SNP [dm3] 3L_18844519_SNP [dm6]	G	A	7.517e^-5	0.489	INTRON Indy
2L	14430978	2L_14430978_SNP [dm3] 2L_14430978_SNP [dm6]	A	G	7.530e^-5	0.489	UPSTREAM CR44732 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7844127	3R_7844127_SNP [dm3] 3R_12018405_SNP [dm6]	C	A	7.556e^-5	0.489	UTR_3_PRIME Spt3	TF binding site mE1_TFBS_chinmo
2L	11362557	2L_11362557_SNP [dm3] 2L_11362557_SNP [dm6]	C	T	7.570e^-5	0.489	INTRON salr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	10832406	2L_10832406_SNP [dm3] 2L_10832406_SNP [dm6]	C	T	7.586e^-5	0.489	INTRON Nos
X	6879893	X_6879893_SNP [dm3] X_6985860_SNP [dm6]	T	A	7.599e^-5	0.489	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	12362934	X_12362934_SNP [dm3] X_12468901_SNP [dm6]	G	A	7.624e^-5	0.489	INTRON CG42258	TF binding site mE1_TFBS_HSA
2L	9982642	2L_9982642_SNP [dm3] 2L_9982642_SNP [dm6]	C	G	7.645e^-5	0.489	INTERGENIC	regulatory region REDfly_CRMs
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	7.666e^-5	0.489	INTRON salm
2L	11354595	2L_11354595_SNP [dm3] 2L_11354595_SNP [dm6]	T	A	7.680e^-5	0.489	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2L	10886542	2L_10886542_SNP [dm3] 2L_10886542_SNP [dm6]	G	A	7.715e^-5	0.489	INTRON CR44490
2L	11446685	2L_11446685_SNP [dm3] 2L_11446685_SNP [dm6]	G	A	7.722e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5561727	3L_5561727_SNP [dm3] 3L_5568627_SNP [dm6]	C	T	7.755e^-5	0.489	SYNONYMOUS_CODING Msr-110 UPSTREAM snmRNA:357	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10020153	X_10020153_SNP [dm3] X_10126120_SNP [dm6]	C	A	7.770e^-5	0.489	INTRON CR44894 & 1 other
X	6879337	X_6879337_SNP [dm3] X_6985304_SNP [dm6]	G	A	7.887e^-5	0.493	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16330550	3L_16330550_SNP [dm3] 3L_16337450_SNP [dm6]	A	G	7.915e^-5	0.493	INTERGENIC
2R	3809371	2R_3809371_SNP [dm3] 2R_7921866_SNP [dm6]	G	A	7.932e^-5	0.493	SYNONYMOUS_CODING Or43b DOWNSTREAM Cul1 & 1 other	TF binding site mE1_TFBS_cad
3L	16330549	3L_16330549_SNP [dm3] 3L_16337449_SNP [dm6]	A	T	8.038e^-5	0.493	INTERGENIC
X	12362911	X_12362911_SNP [dm3] X_12468878_SNP [dm6]	A	T	8.052e^-5	0.493	INTRON CG42258	TF binding site mE1_TFBS_HSA
2R	19238645	2R_19238645_SNP [dm3] 2R_23351122_SNP [dm6]	C	G	8.069e^-5	0.493	UPSTREAM CG34210 INTERGENIC
3L	16330538	3L_16330538_SNP [dm3] 3L_16337438_SNP [dm6]	G	C	8.074e^-5	0.493	INTERGENIC
X	2237930	X_2237930_SNP [dm3] X_2343897_SNP [dm6]	G	C	8.119e^-5	0.493	DOWNSTREAM mRpL14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14145226	3R_14145226_SNP [dm3] 3R_18319504_SNP [dm6]	C	A	8.157e^-5	0.493	INTRON CG31235
X	9666505	X_9666505_SNP [dm3] X_9772472_SNP [dm6]	A	T	8.203e^-5	0.493	INTERGENIC
2L	11442850	2L_11442850_SNP [dm3] 2L_11442850_SNP [dm6]	G	C	8.258e^-5	0.493	INTRON salm
2L	10958617	2L_10958617_SNP [dm3] 2L_10958617_SNP [dm6]	T	G	8.280e^-5	0.493	INTRON dpr2	TF binding site BDTNP1_TFBS_twi
2L	10941978	2L_10941978_SNP [dm3] 2L_10941978_SNP [dm6]	G	C	8.312e^-5	0.493	DOWNSTREAM CR44492 INTRON dpr2
3R	8578327	3R_8578327_SNP [dm3] 3R_12752605_SNP [dm6]	T	C	8.326e^-5	0.493	SYNONYMOUS_CODING beat-Vc
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	8.354e^-5	0.493	INTRON salm
2L	15854133	2L_15854133_SNP [dm3] 2L_15854133_SNP [dm6]	A	G	8.362e^-5	0.493	START_GAINED Tektin-A UTR_5_PRIME Tektin-A UPSTREAM Tektin-A DOWNSTREAM CG13243
3L	18299528	3L_18299528_SNP [dm3] 3L_18306428_SNP [dm6]	C	A	8.366e^-5	0.493	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22115635	3R_22115635_SNP [dm3] 3R_26289913_SNP [dm6]	C	A	8.407e^-5	0.493	INTERGENIC
X	8532109	X_8532109_SNP [dm3] X_8638076_SNP [dm6]	T	G	8.409e^-5	0.493	INTRON oc	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	7743614	3R_7743614_SNP [dm3] 3R_11917892_SNP [dm6]	A	C	8.444e^-5	0.493	INTRON Cad87A
2L	14550370	2L_14550370_SNP [dm3] 2L_14550370_SNP [dm6]	T	C	8.454e^-5	0.493	DOWNSTREAM CR44853 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9982694	2L_9982694_SNP [dm3] 2L_9982694_SNP [dm6]	C	A	8.457e^-5	0.493	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3L	3805685	3L_3805685_INS [dm3] 3L_3805685_INS [dm6]	G	GCCAG	8.497e^-5	0.493	INTRON CG32264 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	4356053	3L_4356053_SNP [dm3] 3L_4356053_SNP [dm6]	C	T	8.501e^-5	0.493	INTRON Cip4
X	14871823	X_14871823_SNP [dm3] X_14977790_SNP [dm6]	T	C	8.511e^-5	0.493	INTRON eag
2L	9127586	2L_9127586_SNP [dm3] 2L_9127586_SNP [dm6]	T	A	8.525e^-5	0.493	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2R	10731047	2R_10731047_SNP [dm3] 2R_14843542_SNP [dm6]	T	C	8.542e^-5	0.493	SYNONYMOUS_CODING NaPi-T
2R	19611990	2R_19611990_SNP [dm3] 2R_23724467_SNP [dm6]	A	G	8.571e^-5	0.493	INTRON Sesn
2R	3812779	2R_3812779_SNP [dm3] 2R_7925274_SNP [dm6]	T	A	8.591e^-5	0.493	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	19063283	2R_19063283_SNP [dm3] 2R_23175760_SNP [dm6]	C	A	8.770e^-5	0.499	INTRON CG34371
2R	5747055	2R_5747055_SNP [dm3] 2R_9859550_SNP [dm6]	T	C	8.838e^-5	0.499	INTRON CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	16330545	3L_16330545_SNP [dm3] 3L_16337445_SNP [dm6]	A	C	8.847e^-5	0.499	INTERGENIC
X	10500236	X_10500236_SNP [dm3] X_10606203_SNP [dm6]	G	C	8.852e^-5	0.499	INTRON CG43347
3R	5640310	3R_5640310_SNP [dm3] 3R_9814588_SNP [dm6]	C	A	8.875e^-5	0.499	SYNONYMOUS_CODING eloF UPSTREAM CR44035 DOWNSTREAM CG8534
3R	26405794	3R_26405794_SNP [dm3] 3R_30580072_SNP [dm6]	C	G	8.881e^-5	0.499	INTRON CG9702	TF binding site mE1_TFBS_HSA
3R	18982542	3R_18982542_SNP [dm3] 3R_23156820_SNP [dm6]	A	G	8.906e^-5	0.499	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14145235	3R_14145235_SNP [dm3] 3R_18319513_SNP [dm6]	C	T	8.918e^-5	0.499	INTRON CG31235
3R	7740802	3R_7740802_SNP [dm3] 3R_11915080_SNP [dm6]	G	A	8.962e^-5	0.5	INTRON Cad87A
2L	12819656	2L_12819656_SNP [dm3] 2L_12819656_SNP [dm6]	T	A	8.998e^-5	0.5	NON_SYNONYMOUS_CODING kek1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11442809	2L_11442809_SNP [dm3] 2L_11442809_SNP [dm6]	A	C	9.014e^-5	0.5	INTRON salm
2L	11465988	2L_11465988_SNP [dm3] 2L_11465988_SNP [dm6]	A	C	9.143e^-5	0.504	INTERGENIC
3L	12005150	3L_12005150_SNP [dm3] 3L_12012050_SNP [dm6]	G	C	9.200e^-5	0.504	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15210135	X_15210135_SNP [dm3] X_15316102_SNP [dm6]	C	A	9.212e^-5	0.504	INTRON gce EXON CR44961	TF binding site mE1_TFBS_cad
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	9.219e^-5	0.504	INTRON salm
X	1263681	X_1263681_SNP [dm3] X_1369648_SNP [dm6]	T	C	9.237e^-5	0.504	SYNONYMOUS_CODING CG14770 UPSTREAM ssx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sbb
2L	6859812	2L_6859812_SNP [dm3] 2L_6859812_SNP [dm6]	C	G	9.244e^-5	0.504	SYNONYMOUS_CODING l_2_k09022	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5747039	2R_5747039_MNP [dm3] 2R_9859534_MNP [dm6]	CCA	AGT	9.263e^-5	0.504	INTRON CG1516	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	19217913	3L_19217913_SNP [dm3] 3L_19224813_SNP [dm6]	A	G	9.322e^-5	0.505	INTRON fz2
2L	14391153	2L_14391153_SNP [dm3] 2L_14391153_SNP [dm6]	T	G	9.365e^-5	0.505	UTR_3_PRIME elB	TF binding site mE1_TFBS_chinmo
2L	2784883	2L_2784883_SNP [dm3] 2L_2784883_SNP [dm6]	A	G	9.372e^-5	0.505	UTR_3_PRIME Syt1 INTRON Syt1
3R	26006739	3R_26006739_SNP [dm3] 3R_30181017_SNP [dm6]	T	C	9.411e^-5	0.505	UTR_3_PRIME Bet5 DOWNSTREAM CG15530
3R	12651073	3R_12651073_SNP [dm3] 3R_16825351_SNP [dm6]	C	T	9.416e^-5	0.505	INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	16039920	X_16039920_SNP [dm3] X_16145887_SNP [dm6]	A	G	9.499e^-5	0.508	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
2R	11239579	2R_11239579_INS [dm3] 2R_15352074_INS [dm6]	A	AACCA	9.552e^-5	0.509	INTRON unc-5	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	5881305	2R_5881305_SNP [dm3] 2R_9993800_SNP [dm6]	T	C	9.629e^-5	0.511	DOWNSTREAM Pka-R2 & 1 other INTERGENIC
2R	19532899	2R_19532899_SNP [dm3] 2R_23645376_SNP [dm6]	G	T	9.708e^-5	0.511	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12425598	2L_12425598_SNP [dm3] 2L_12425598_SNP [dm6]	G	T	9.728e^-5	0.511	NON_SYNONYMOUS_CODING CG6405	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	11468264	2L_11468264_SNP [dm3] 2L_11468264_SNP [dm6]	A	G	9.747e^-5	0.511	INTERGENIC
3R	8346482	3R_8346482_SNP [dm3] 3R_12520760_SNP [dm6]	C	T	9.771e^-5	0.511	INTRON Octbeta3R
3R	9024626	3R_9024626_SNP [dm3] 3R_13198904_SNP [dm6]	T	A	9.792e^-5	0.511	INTERGENIC
2R	11605319	2R_11605319_SNP [dm3] 2R_15717814_SNP [dm6]	A	C	9.801e^-5	0.511	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	26405766	3R_26405766_SNP [dm3] 3R_30580044_SNP [dm6]	C	T	9.833e^-5	0.511	INTRON CG9702	TF binding site mE1_TFBS_HSA
3L	14585958	3L_14585958_SNP [dm3] 3L_14592858_SNP [dm6]	C	T	9.846e^-5	0.511	INTRON HGTX	TF binding site BDTNP1_TFBS_da
2R	19240521	2R_19240521_SNP [dm3] 2R_23352998_SNP [dm6]	T	C	9.894e^-5	0.511	DOWNSTREAM CG34210 INTERGENIC
3R	8495201	3R_8495201_SNP [dm3] 3R_12669479_SNP [dm6]	C	T	9.900e^-5	0.511	INTRON CG14395
2L	11449536	2L_11449536_SNP [dm3] 2L_11449536_SNP [dm6]	A	C	9.931e^-5	0.511	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3624238	3L_3624238_SNP [dm3] 3L_3624238_SNP [dm6]	A	T	9.948e^-5	0.511	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	3308228	2L_3308228_SNP [dm3] 2L_3308228_SNP [dm6]	G	A	9.980e^-5	0.511	UPSTREAM CG15406 INTRON CG3277
2R	3812903	2R_3812903_SNP [dm3] 2R_7925398_SNP [dm6]	A	T	1.004e^-4	0.513	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	5439524	2L_5439524_SNP [dm3] 2L_5439524_SNP [dm6]	T	A	1.011e^-4	0.514	UPSTREAM CR31647 INTERGENIC
X	9666282	X_9666282_SNP [dm3] X_9772249_SNP [dm6]	C	T	1.017e^-4	0.514	INTERGENIC
2L	7773855	2L_7773855_SNP [dm3] 2L_7773855_SNP [dm6]	C	A	1.017e^-4	0.514	INTRON CG7191
2R	5747056	2R_5747056_SNP [dm3] 2R_9859551_SNP [dm6]	T	A	1.018e^-4	0.514	INTRON CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8888492	3R_8888492_SNP [dm3] 3R_13062770_SNP [dm6]	G	A	1.024e^-4	0.514	INTRON sim
3L	9985612	3L_9985612_SNP [dm3] 3L_9992512_SNP [dm6]	G	C	1.031e^-4	0.514	INTRON dpr6
2L	11442910	2L_11442910_INS [dm3] 2L_11442910_INS [dm6]	A	ATGGCTT	1.033e^-4	0.514	INTRON salm
2L	6017943	2L_6017943_SNP [dm3] 2L_6017943_SNP [dm6]	A	T	1.035e^-4	0.514	INTRON H2.0
2L	10028321	2L_10028321_SNP [dm3] 2L_10028321_SNP [dm6]	A	T	1.039e^-4	0.514	NON_SYNONYMOUS_CODING CG13127
2R	4192646	2R_4192646_SNP [dm3] 2R_8305141_SNP [dm6]	G	A	1.040e^-4	0.514	DOWNSTREAM CR44447 INTERGENIC
2L	11209433	2L_11209433_SNP [dm3] 2L_11209433_SNP [dm6]	T	C	1.049e^-4	0.514	INTERGENIC	silencer mE1_HDAC_PRE
3R	6733658	3R_6733658_SNP [dm3] 3R_10907936_SNP [dm6]	T	C	1.051e^-4	0.514	INTERGENIC
X	6321073	X_6321073_SNP [dm3] X_6427040_SNP [dm6]	A	G	1.055e^-4	0.514	INTRON CG42340
2R	19240878	2R_19240878_SNP [dm3] 2R_23353355_SNP [dm6]	G	A	1.058e^-4	0.514	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	22020382	2L_22020382_SNP [dm3] 2L_22020382_SNP [dm6]	G	T	1.058e^-4	0.514	DOWNSTREAM CR33987 INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	5747036	2R_5747036_SNP [dm3] 2R_9859531_SNP [dm6]	C	T	1.058e^-4	0.514	INTRON CG1516	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19429619	X_19429619_SNP [dm3] X_19535586_SNP [dm6]	T	C	1.060e^-4	0.514	INTRON CG32532
X	4861945	X_4861945_SNP [dm3] X_4967912_SNP [dm6]	C	T	1.068e^-4	0.514	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4861905	X_4861905_SNP [dm3] X_4967872_SNP [dm6]	A	G	1.068e^-4	0.514	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8513424	3R_8513424_SNP [dm3] 3R_12687702_SNP [dm6]	C	G	1.069e^-4	0.514	INTRON kar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8651597	3R_8651597_DEL [dm3] 3R_12825875_DEL [dm6]	ATTGCTAAT	A	1.069e^-4	0.514	INTERGENIC
3R	8648827	3R_8648827_SNP [dm3] 3R_12823105_SNP [dm6]	G	C	1.070e^-4	0.514	INTERGENIC
2R	19711631	2R_19711631_SNP [dm3] 2R_23824108_SNP [dm6]	T	C	1.070e^-4	0.514	INTRON CG5549 & 1 other	TF binding site mE1_TFBS_chinmo
X	14872238	X_14872238_DEL [dm3] X_14978205_DEL [dm6]	TCTGCGGATT	T	1.073e^-4	0.514	INTRON eag
3R	7853617	3R_7853617_SNP [dm3] 3R_12027895_SNP [dm6]	G	A	1.073e^-4	0.514	UTR_3_PRIME CG31358 DOWNSTREAM CG31358 & 2 others
X	4861916	X_4861916_SNP [dm3] X_4967883_SNP [dm6]	A	C	1.082e^-4	0.514	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18383000	2R_18383000_SNP [dm3] 2R_22495495_SNP [dm6]	A	T	1.084e^-4	0.514	UTR_3_PRIME px
3R	8609424	3R_8609424_SNP [dm3] 3R_12783702_SNP [dm6]	A	T	1.084e^-4	0.514	UPSTREAM beat-Vc INTERGENIC
3R	9024585	3R_9024585_SNP [dm3] 3R_13198863_SNP [dm6]	C	T	1.086e^-4	0.514	INTERGENIC
3R	24358971	3R_24358971_SNP [dm3] 3R_28533249_SNP [dm6]	C	T	1.101e^-4	0.518	INTRON Ppn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3810554	3L_3810554_SNP [dm3] 3L_3810554_SNP [dm6]	C	T	1.102e^-4	0.518	SYNONYMOUS_CODING CG32263 UPSTREAM CG32262 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	3812632	2R_3812632_SNP [dm3] 2R_7925127_SNP [dm6]	A	T	1.109e^-4	0.518	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	5645415	3L_5645415_SNP [dm3] 3L_5652315_SNP [dm6]	C	T	1.115e^-4	0.518	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	8538978	3R_8538978_SNP [dm3] 3R_12713256_SNP [dm6]	T	C	1.115e^-4	0.518	UTR_3_PRIME Men UPSTREAM mus308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sbb
2L	11442875	2L_11442875_DEL [dm3] 2L_11442875_DEL [dm6]	CAC	T	1.119e^-4	0.518	INTRON salm
3R	12651069	3R_12651069_SNP [dm3] 3R_16825347_SNP [dm6]	T	G	1.123e^-4	0.518	INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	19437195	2L_19437195_SNP [dm3] 2L_19437195_SNP [dm6]	C	A	1.125e^-4	0.518	INTRON CG10237
2R	16966284	2R_16966284_SNP [dm3] 2R_21078779_SNP [dm6]	A	T	1.125e^-4	0.518	INTRON Treh
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	1.132e^-4	0.518	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
3L	19217897	3L_19217897_SNP [dm3] 3L_19224797_SNP [dm6]	G	A	1.137e^-4	0.518	INTRON fz2
3R	8268696	3R_8268696_SNP [dm3] 3R_12442974_SNP [dm6]	C	A	1.140e^-4	0.518	UPSTREAM Desat1 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19662292	X_19662292_SNP [dm3] X_19768259_SNP [dm6]	G	A	1.141e^-4	0.518	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1147090	2L_1147090_SNP [dm3] 2L_1147090_SNP [dm6]	C	T	1.146e^-4	0.518	UTR_3_PRIME MFS3 UPSTREAM CG4749	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12697459	2L_12697459_SNP [dm3] 2L_12697459_SNP [dm6]	A	C	1.147e^-4	0.518	UPSTREAM CG5781 INTRON PICK1	TF binding site mE1_TFBS_cad
2R	18466466	2R_18466466_SNP [dm3] 2R_22578961_SNP [dm6]	G	A	1.149e^-4	0.518	INTRON dnr1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6388372	X_6388372_SNP [dm3] X_6494339_SNP [dm6]	C	T	1.152e^-4	0.518	INTRON CG42340
2R	12790537	2R_12790537_SNP [dm3] 2R_16903032_SNP [dm6]	C	A	1.153e^-4	0.518	INTERGENIC
X	4861897	X_4861897_SNP [dm3] X_4967864_SNP [dm6]	T	A	1.153e^-4	0.518	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9998438	2L_9998438_SNP [dm3] 2L_9998438_SNP [dm6]	G	A	1.154e^-4	0.518	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
2R	3812896	2R_3812896_SNP [dm3] 2R_7925391_SNP [dm6]	G	A	1.155e^-4	0.518	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	22030410	2L_22030410_SNP [dm3] 2L_22030410_SNP [dm6]	G	A	1.165e^-4	0.518	INTERGENIC
2R	5740274	2R_5740274_SNP [dm3] 2R_9852769_SNP [dm6]	C	A	1.169e^-4	0.518	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_chinmo
2L	11354609	2L_11354609_SNP [dm3] 2L_11354609_SNP [dm6]	G	A	1.171e^-4	0.518	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
3R	7757845	3R_7757845_SNP [dm3] 3R_11932123_SNP [dm6]	T	G	1.173e^-4	0.518	INTRON Cad87A & 1 other
3L	7489556	3L_7489556_INS [dm3] 3L_7496456_INS [dm6]	T	TCAAA	1.174e^-4	0.518	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
2R	19240541	2R_19240541_INS [dm3] 2R_23353018_INS [dm6]	C	CACGC	1.175e^-4	0.518	DOWNSTREAM CG34210 INTERGENIC
2L	21006971	2L_21006971_SNP [dm3] 2L_21006971_SNP [dm6]	A	G	1.178e^-4	0.518	INTRON CG42238
2L	9982684	2L_9982684_DEL [dm3] 2L_9982684_DEL [dm6]	ACTTCTTC	G	1.179e^-4	0.518	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	9982717	2L_9982717_DEL [dm3] 2L_9982717_DEL [dm6]	TCCTTC	T	1.179e^-4	0.518	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3R	8327259	3R_8327259_SNP [dm3] 3R_12501537_SNP [dm6]	A	C	1.180e^-4	0.518	UPSTREAM Hsp70Bbb INTERGENIC	transposable element FlyBase
2R	5715696	2R_5715696_SNP [dm3] 2R_9828191_SNP [dm6]	T	A	1.182e^-4	0.518	UTR_3_PRIME hebe UPSTREAM dila
2R	5698521	2R_5698521_SNP [dm3] 2R_9811016_SNP [dm6]	C	A	1.185e^-4	0.518	UTR_3_PRIME CG1648 DOWNSTREAM CG1648	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	6223580	3L_6223580_SNP [dm3] 3L_6230480_SNP [dm6]	C	A	1.188e^-4	0.518	INTERGENIC
3L	4876421	3L_4876421_SNP [dm3] 3L_4876421_SNP [dm6]	C	T	1.198e^-4	0.521	INTRON CG17150
2R	5735332	2R_5735332_SNP [dm3] 2R_9847827_SNP [dm6]	A	C	1.200e^-4	0.521	UTR_5_PRIME Prosalpha7 UPSTREAM CG1671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	18072017	3L_18072017_SNP [dm3] 3L_18078917_SNP [dm6]	T	G	1.202e^-4	0.521	DOWNSTREAM CR45392 INTERGENIC
3L	22842890	3L_22842890_SNP [dm3] 3L_22849790_SNP [dm6]	A	G	1.209e^-4	0.521	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11429907	2L_11429907_SNP [dm3] 2L_11429907_SNP [dm6]	A	G	1.216e^-4	0.521	INTERGENIC
2L	11450545	2L_11450545_SNP [dm3] 2L_11450545_SNP [dm6]	T	A	1.218e^-4	0.521	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	5747037	2R_5747037_SNP [dm3] 2R_9859532_SNP [dm6]	G	A	1.220e^-4	0.521	INTRON CG1516	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8507405	3R_8507405_SNP [dm3] 3R_12681683_SNP [dm6]	G	T	1.223e^-4	0.521	UPSTREAM Cyp313a4 DOWNSTREAM kar INTERGENIC
X	6879881	X_6879881_SNP [dm3] X_6985848_SNP [dm6]	A	G	1.223e^-4	0.521	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	9666895	X_9666895_SNP [dm3] X_9772862_SNP [dm6]	T	C	1.223e^-4	0.521	INTERGENIC
X	19896249	X_19896249_SNP [dm3] X_20002216_SNP [dm6]	T	C	1.231e^-4	0.524	UPSTREAM CG17003 INTERGENIC
3L	5645530	3L_5645530_SNP [dm3] 3L_5652430_SNP [dm6]	T	C	1.234e^-4	0.524	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	9666149	X_9666149_SNP [dm3] X_9772116_SNP [dm6]	G	C	1.244e^-4	0.525	INTERGENIC
3L	18836857	3L_18836857_SNP [dm3] 3L_18843757_SNP [dm6]	A	G	1.245e^-4	0.525	DOWNSTREAM CR32027 INTRON Indy
2L	18908235	2L_18908235_SNP [dm3] 2L_18908235_SNP [dm6]	A	G	1.245e^-4	0.525	INTERGENIC
X	1279607	X_1279607_SNP [dm3] X_1385574_SNP [dm6]	T	G	1.249e^-4	0.525	UPSTREAM CG32813 INTRON CG32813	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8646044	3R_8646044_SNP [dm3] 3R_12820322_SNP [dm6]	C	A	1.251e^-4	0.525	INTERGENIC
2L	7226594	2L_7226594_DEL [dm3] 2L_7226594_DEL [dm6]	GG	G	1.254e^-4	0.525	UTR_3_PRIME Ndae1 INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	18132049	3L_18132049_SNP [dm3] 3L_18138949_SNP [dm6]	A	C	1.258e^-4	0.525	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3530861	2L_3530861_SNP [dm3] 2L_3530861_SNP [dm6]	A	T	1.269e^-4	0.525	UTR_5_PRIME Che-13 UPSTREAM Spindly	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_zfh1
2L	2064740	2L_2064740_DEL [dm3] 2L_2064740_DEL [dm6]	CTTGCACTGCC...	C	1.270e^-4	0.525	INTRON dpr3
3L	14189516	3L_14189516_SNP [dm3] 3L_14196416_SNP [dm6]	G	T	1.271e^-4	0.525	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	21127426	2L_21127426_SNP [dm3] 2L_21127426_SNP [dm6]	T	A	1.271e^-4	0.525	INTRON Nhe2
3L	5706285	3L_5706285_SNP [dm3] 3L_5713185_SNP [dm6]	C	G	1.272e^-4	0.525	UPSTREAM CG44521 INTRON sif
X	9666509	X_9666509_SNP [dm3] X_9772476_SNP [dm6]	G	A	1.276e^-4	0.525	INTERGENIC
3L	4876411	3L_4876411_DEL [dm3] 3L_4876411_DEL [dm6]	CTTTTTC	C	1.279e^-4	0.525	INTRON CG17150
X	15433147	X_15433147_SNP [dm3] X_15539114_SNP [dm6]	G	A	1.281e^-4	0.525	INTRON Ac13E
2R	18012242	2R_18012242_SNP [dm3] 2R_22124737_SNP [dm6]	G	A	1.286e^-4	0.525	UTR_3_PRIME GM130 DOWNSTREAM mei-S332	TF binding site mE1_TFBS_cad
X	8326104	X_8326104_DEL [dm3] X_8432071_DEL [dm6]	AA	A	1.286e^-4	0.525	UTR_3_PRIME Trf2
3R	8138043	3R_8138043_SNP [dm3] 3R_12312321_SNP [dm6]	C	T	1.290e^-4	0.525	SYNONYMOUS_CODING CG4066	TF binding site mE1_TFBS_sens
X	12735998	X_12735998_SNP [dm3] X_12841965_SNP [dm6]	G	T	1.294e^-4	0.525	INTRON Pde9
3R	20906851	3R_20906851_SNP [dm3] 3R_25081129_SNP [dm6]	T	C	1.294e^-4	0.525	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11010472	2L_11010472_SNP [dm3] 2L_11010472_SNP [dm6]	C	T	1.296e^-4	0.525	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	9982693	2L_9982693_SNP [dm3] 2L_9982693_SNP [dm6]	C	A	1.302e^-4	0.526	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3R	5129307	3R_5129307_SNP [dm3] 3R_9303585_SNP [dm6]	G	A	1.306e^-4	0.527	INTRON CG8861
2R	18015182	2R_18015182_SNP [dm3] 2R_22127677_SNP [dm6]	C	T	1.314e^-4	0.527	UPSTREAM NtR & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	22006730	3R_22006730_SNP [dm3] 3R_26181008_SNP [dm6]	C	A	1.315e^-4	0.527	INTRON CG31323
2L	7471414	2L_7471414_SNP [dm3] 2L_7471414_SNP [dm6]	A	T	1.316e^-4	0.527	UTR_5_PRIME CG6055 INTRON CG6055
3L	1590897	3L_1590897_SNP [dm3] 3L_1590897_SNP [dm6]	T	C	1.320e^-4	0.528	INTRON CG13917
3R	20623510	3R_20623510_SNP [dm3] 3R_24797788_SNP [dm6]	A	G	1.324e^-4	0.528	UTR_3_PRIME Ets96B & 1 other
3R	8783040	3R_8783040_INS [dm3] 3R_12957318_INS [dm6]	A	AA	1.328e^-4	0.528	INTRON grsm
3R	8585185	3R_8585185_SNP [dm3] 3R_12759463_SNP [dm6]	A	G	1.330e^-4	0.528	INTRON beat-Vc
2L	16161352	2L_16161352_SNP [dm3] 2L_16161352_SNP [dm6]	C	T	1.342e^-4	0.528	INTERGENIC
X	9666807	X_9666807_SNP [dm3] X_9772774_SNP [dm6]	A	C	1.347e^-4	0.528	INTERGENIC
3L	9328509	3L_9328509_SNP [dm3] 3L_9335409_SNP [dm6]	A	G	1.353e^-4	0.528	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	1.359e^-4	0.528	UPSTREAM hoe1 INTRON hoe1
2R	5738956	2R_5738956_SNP [dm3] 2R_9851451_SNP [dm6]	T	A	1.360e^-4	0.528	SPLICE_SITE_REGION CG1516 DOWNSTREAM CG1671 INTRON CG1516
2R	5745272	2R_5745272_SNP [dm3] 2R_9857767_SNP [dm6]	C	T	1.360e^-4	0.528	INTRON CG1516
2R	5745296	2R_5745296_SNP [dm3] 2R_9857791_SNP [dm6]	G	C	1.360e^-4	0.528	INTRON CG1516
2R	5747087	2R_5747087_SNP [dm3] 2R_9859582_SNP [dm6]	T	C	1.360e^-4	0.528	INTRON CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	5752278	2R_5752278_SNP [dm3] 2R_9864773_SNP [dm6]	G	T	1.360e^-4	0.528	SYNONYMOUS_CODING cbx UPSTREAM Ntmt DOWNSTREAM CG30010	TF binding site mE1_TFBS_sens
2R	5771918	2R_5771918_SNP [dm3] 2R_9884413_SNP [dm6]	T	C	1.360e^-4	0.528	INTRON CG1513
3R	21045824	3R_21045824_SNP [dm3] 3R_25220102_SNP [dm6]	C	T	1.362e^-4	0.528	INTRON CG31103	TF binding site BDTNP1_TFBS_dl
3R	7746303	3R_7746303_SNP [dm3] 3R_11920581_SNP [dm6]	A	C	1.369e^-4	0.528	INTRON Cad87A
X	14872115	X_14872115_SNP [dm3] X_14978082_SNP [dm6]	C	G	1.370e^-4	0.528	INTRON eag
3R	19342504	3R_19342504_SNP [dm3] 3R_23516782_SNP [dm6]	C	T	1.371e^-4	0.528	INTRON Irk2	TF binding site mE1_TFBS_Trl
X	9666520	X_9666520_SNP [dm3] X_9772487_SNP [dm6]	C	A	1.383e^-4	0.528	INTERGENIC
2R	9149323	2R_9149323_SNP [dm3] 2R_13261818_SNP [dm6]	G	T	1.384e^-4	0.528	UPSTREAM CG42319 INTRON CG42319
3L	14205821	3L_14205821_SNP [dm3] 3L_14212721_SNP [dm6]	T	A	1.386e^-4	0.528	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
X	4861992	X_4861992_SNP [dm3] X_4967959_SNP [dm6]	G	A	1.393e^-4	0.528	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5747073	2R_5747073_SNP [dm3] 2R_9859568_SNP [dm6]	T	A	1.396e^-4	0.528	INTRON CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8379790	3R_8379790_SNP [dm3] 3R_12554068_SNP [dm6]	A	C	1.396e^-4	0.528	INTRON Octbeta2R
3L	3607252	3L_3607252_SNP [dm3] 3L_3607252_SNP [dm6]	T	C	1.400e^-4	0.528	INTRON Eip63E	TF binding site mE1_TFBS_zfh1
3R	5640267	3R_5640267_SNP [dm3] 3R_9814545_SNP [dm6]	G	C	1.406e^-4	0.528	NON_SYNONYMOUS_CODING eloF UPSTREAM CR44035 DOWNSTREAM CG8534	TF binding site mE1_TFBS_sens
3R	10248243	3R_10248243_SNP [dm3] 3R_14422521_SNP [dm6]	C	T	1.409e^-4	0.528	DOWNSTREAM natalisin INTRON cv-c EXON CR44176
3L	4356087	3L_4356087_SNP [dm3] 3L_4356087_SNP [dm6]	T	C	1.409e^-4	0.528	INTRON Cip4
3L	2915581	3L_2915581_SNP [dm3] 3L_2915581_SNP [dm6]	A	G	1.411e^-4	0.528	SYNONYMOUS_CODING CG9970 INTRON Shab	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14545703	X_14545703_INS [dm3] X_14651670_INS [dm6]	T	TT	1.412e^-4	0.528	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	9666898	X_9666898_SNP [dm3] X_9772865_SNP [dm6]	C	T	1.413e^-4	0.528	INTERGENIC
3R	13826430	3R_13826430_SNP [dm3] 3R_18000708_SNP [dm6]	T	C	1.420e^-4	0.528	INTRON cpo
2L	8824407	2L_8824407_SNP [dm3] 2L_8824407_SNP [dm6]	C	A	1.423e^-4	0.528	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10731181	2R_10731181_SNP [dm3] 2R_14843676_SNP [dm6]	T	A	1.424e^-4	0.528	INTRON NaPi-T
2L	9998986	2L_9998986_SNP [dm3] 2L_9998986_SNP [dm6]	T	C	1.424e^-4	0.528	NON_SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
3R	8517655	3R_8517655_SNP [dm3] 3R_12691933_SNP [dm6]	T	C	1.426e^-4	0.528	UTR_3_PRIME CG31347 UPSTREAM Su_fu_ INTRON Arp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	8346464	3R_8346464_SNP [dm3] 3R_12520742_SNP [dm6]	C	A	1.431e^-4	0.528	INTRON Octbeta3R
3R	7121612	3R_7121612_SNP [dm3] 3R_11295890_SNP [dm6]	T	A	1.431e^-4	0.528	INTRON CR31386	TF binding site mE1_TFBS_inv
2L	15244957	2L_15244957_SNP [dm3] 2L_15244957_SNP [dm6]	A	G	1.432e^-4	0.528	INTRON ZnT35C
3L	16330544	3L_16330544_SNP [dm3] 3L_16337444_SNP [dm6]	T	G	1.432e^-4	0.528	INTERGENIC
3R	7737381	3R_7737381_SNP [dm3] 3R_11911659_SNP [dm6]	C	G	1.433e^-4	0.528	INTRON Cad87A
3R	8569347	3R_8569347_SNP [dm3] 3R_12743625_SNP [dm6]	C	A	1.437e^-4	0.528	NON_SYNONYMOUS_CODING CG5999
2L	14780110	2L_14780110_SNP [dm3] 2L_14780110_SNP [dm6]	C	T	1.440e^-4	0.529	INTERGENIC
2R	11609424	2R_11609424_DEL [dm3] 2R_15721919_DEL [dm6]	CC	C	1.443e^-4	0.529	INTERGENIC
2R	5735992	2R_5735992_SNP [dm3] 2R_9848487_SNP [dm6]	C	G	1.451e^-4	0.53	NON_SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8888572	3R_8888572_INS [dm3] 3R_13062850_INS [dm6]	T	TACGGTTTATAGT...	1.452e^-4	0.53	INTRON sim
2R	3812901	2R_3812901_SNP [dm3] 2R_7925396_SNP [dm6]	C	T	1.457e^-4	0.53	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6564637	3R_6564637_SNP [dm3] 3R_10738915_SNP [dm6]	A	C	1.462e^-4	0.53	INTRON TkR86C	TF binding site mE1_TFBS_cad
3R	15103393	3R_15103393_SNP [dm3] 3R_19277671_SNP [dm6]	A	T	1.466e^-4	0.53	INTERGENIC
3L	11017597	3L_11017597_SNP [dm3] 3L_11024497_SNP [dm6]	T	C	1.468e^-4	0.53	NON_SYNONYMOUS_CODING Fad2
2L	11192220	2L_11192220_SNP [dm3] 2L_11192220_SNP [dm6]	C	G	1.468e^-4	0.53	INTRON Ca-beta
3L	9995578	3L_9995578_DEL [dm3] 3L_10002478_DEL [dm6]	CA	C	1.470e^-4	0.53	INTRON dpr6
2R	18662937	2R_18662937_SNP [dm3] 2R_22775432_SNP [dm6]	G	A	1.473e^-4	0.53	INTRON CG42260
3L	5881478	3L_5881478_DEL [dm3] 3L_5888378_DEL [dm6]	TA	C	1.480e^-4	0.53	INTERGENIC
2L	11447279	2L_11447279_SNP [dm3] 2L_11447279_SNP [dm6]	C	T	1.490e^-4	0.53	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14784020	2L_14784020_SNP [dm3] 2L_14784020_SNP [dm6]	A	G	1.494e^-4	0.53	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8578318	3R_8578318_SNP [dm3] 3R_12752596_SNP [dm6]	A	G	1.495e^-4	0.53	SYNONYMOUS_CODING beat-Vc
2R	5735680	2R_5735680_SNP [dm3] 2R_9848175_SNP [dm6]	G	T	1.498e^-4	0.53	UPSTREAM Prosalpha7 INTRON CG1671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	5745204	2R_5745204_SNP [dm3] 2R_9857699_SNP [dm6]	C	G	1.498e^-4	0.53	INTRON CG1516
2R	5747788	2R_5747788_SNP [dm3] 2R_9860283_SNP [dm6]	G	A	1.498e^-4	0.53	UPSTREAM CR44293 INTRON CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	3567628	2L_3567628_SNP [dm3] 2L_3567628_SNP [dm6]	G	T	1.499e^-4	0.53	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	9666531	X_9666531_SNP [dm3] X_9772498_SNP [dm6]	G	A	1.501e^-4	0.53	INTERGENIC
X	6405313	X_6405313_SNP [dm3] X_6511280_SNP [dm6]	A	G	1.503e^-4	0.53	INTRON CG42340
3L	2828744	3L_2828744_SNP [dm3] 3L_2828744_SNP [dm6]	G	T	1.504e^-4	0.53	INTRON CG43444
3R	8538954	3R_8538954_SNP [dm3] 3R_12713232_SNP [dm6]	A	C	1.508e^-4	0.53	UTR_3_PRIME Men UPSTREAM mus308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sbb
3R	7026683	3R_7026683_SNP [dm3] 3R_11200961_SNP [dm6]	A	C	1.509e^-4	0.53	INTRON cu
3R	8538956	3R_8538956_SNP [dm3] 3R_12713234_SNP [dm6]	G	C	1.514e^-4	0.531	UTR_3_PRIME Men UPSTREAM mus308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sbb
2R	5750537	2R_5750537_SNP [dm3] 2R_9863032_SNP [dm6]	A	G	1.522e^-4	0.532	UPSTREAM CG30010 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26405783	3R_26405783_SNP [dm3] 3R_30580061_SNP [dm6]	T	A	1.524e^-4	0.532	INTRON CG9702	TF binding site mE1_TFBS_HSA
3R	5202794	3R_5202794_SNP [dm3] 3R_9377072_SNP [dm6]	A	C	1.533e^-4	0.535	INTRON FER	TF binding site BDTNP1_TFBS_twi
2R	1373350	2R_1373350_SNP [dm3] 2R_5485845_SNP [dm6]	T	C	1.539e^-4	0.535	INTRON CG30440
3R	8370522	3R_8370522_SNP [dm3] 3R_12544800_SNP [dm6]	C	T	1.541e^-4	0.535	INTRON Octbeta3R
X	13154203	X_13154203_SNP [dm3] X_13260170_SNP [dm6]	T	C	1.545e^-4	0.536	SYNONYMOUS_CODING comt	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9716329	3L_9716329_SNP [dm3] 3L_9723229_SNP [dm6]	A	G	1.554e^-4	0.537	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10271237	2L_10271237_SNP [dm3] 2L_10271237_SNP [dm6]	G	A	1.557e^-4	0.537	SYNONYMOUS_CODING Mulk DOWNSTREAM trk
3L	14441403	3L_14441403_SNP [dm3] 3L_14448303_SNP [dm6]	A	G	1.557e^-4	0.537	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	16290036	X_16290036_SNP [dm3] X_16396003_SNP [dm6]	C	T	1.562e^-4	0.537	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	1.563e^-4	0.537	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5751384	2R_5751384_SNP [dm3] 2R_9863879_SNP [dm6]	T	A	1.566e^-4	0.537	START_GAINED CG30010 UTR_5_PRIME CG30010 DOWNSTREAM cbx	TF binding site mE1_TFBS_HSA
3R	8265539	3R_8265539_SNP [dm3] 3R_12439817_SNP [dm6]	G	T	1.579e^-4	0.54	UPSTREAM CG17207 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	15244896	2L_15244896_SNP [dm3] 2L_15244896_SNP [dm6]	C	A	1.580e^-4	0.54	INTRON ZnT35C
2L	16045029	2L_16045029_SNP [dm3] 2L_16045029_SNP [dm6]	T	G	1.584e^-4	0.54	INTRON BicC & 1 other
2L	9982648	2L_9982648_SNP [dm3] 2L_9982648_SNP [dm6]	A	G	1.588e^-4	0.54	INTERGENIC	regulatory region REDfly_CRMs
2R	11608971	2R_11608971_SNP [dm3] 2R_15721466_SNP [dm6]	C	G	1.596e^-4	0.54	INTERGENIC
2R	11609378	2R_11609378_SNP [dm3] 2R_15721873_SNP [dm6]	C	T	1.596e^-4	0.54	INTERGENIC
2R	11609519	2R_11609519_SNP [dm3] 2R_15722014_SNP [dm6]	G	A	1.596e^-4	0.54	INTERGENIC
3R	11587690	3R_11587690_SNP [dm3] 3R_15761968_SNP [dm6]	T	C	1.601e^-4	0.541	INTERGENIC
X	9666904	X_9666904_SNP [dm3] X_9772871_SNP [dm6]	T	G	1.605e^-4	0.541	INTERGENIC
2L	9982705	2L_9982705_SNP [dm3] 2L_9982705_SNP [dm6]	T	G	1.610e^-4	0.541	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
X	12373066	X_12373066_SNP [dm3] X_12479033_SNP [dm6]	G	A	1.613e^-4	0.541	DOWNSTREAM CG42258 INTERGENIC
2R	11610359	2R_11610359_SNP [dm3] 2R_15722854_SNP [dm6]	C	T	1.617e^-4	0.541	INTERGENIC
2L	8033585	2L_8033585_SNP [dm3] 2L_8033585_SNP [dm6]	C	G	1.618e^-4	0.541	INTRON CG7367 & 1 other
3R	7740692	3R_7740692_SNP [dm3] 3R_11914970_SNP [dm6]	A	T	1.618e^-4	0.541	INTRON Cad87A
3L	4356090	3L_4356090_SNP [dm3] 3L_4356090_SNP [dm6]	G	A	1.622e^-4	0.541	INTRON Cip4
2L	9811149	2L_9811149_SNP [dm3] 2L_9811149_SNP [dm6]	C	A	1.627e^-4	0.542	INTRON nAChRalpha6
2R	19240018	2R_19240018_INS [dm3] 2R_23352495_INS [dm6]	T	TT	1.632e^-4	0.542	DOWNSTREAM CG34210 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2942236	X_2942236_SNP [dm3] X_3048203_SNP [dm6]	C	G	1.632e^-4	0.542	INTRON kirre
2R	18382994	2R_18382994_SNP [dm3] 2R_22495489_SNP [dm6]	C	T	1.637e^-4	0.542	UTR_3_PRIME px
2R	5745189	2R_5745189_SNP [dm3] 2R_9857684_SNP [dm6]	A	G	1.643e^-4	0.543	INTRON CG1516
3R	25398623	3R_25398623_SNP [dm3] 3R_29572901_SNP [dm6]	G	A	1.653e^-4	0.546	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448174	2L_11448174_DEL [dm3] 2L_11448174_DEL [dm6]	AG	A	1.668e^-4	0.546	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	4743620	2R_4743620_INS [dm3] 2R_8856115_INS [dm6]	G	GG	1.671e^-4	0.546	DOWNSTREAM sns INTERGENIC
X	8681815	X_8681815_SNP [dm3] X_8787782_SNP [dm6]	T	C	1.676e^-4	0.546	SYNONYMOUS_CODING Lim1
2L	11832698	2L_11832698_SNP [dm3] 2L_11832698_SNP [dm6]	A	C	1.678e^-4	0.546	INTRON Pde1c
X	4861891	X_4861891_INS [dm3] X_4967858_INS [dm6]	T	TC	1.683e^-4	0.546	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9756361	2R_9756361_SNP [dm3] 2R_13868856_SNP [dm6]	A	T	1.684e^-4	0.546	INTRON shot
3R	22115678	3R_22115678_SNP [dm3] 3R_26289956_SNP [dm6]	A	T	1.685e^-4	0.546	INTERGENIC
2R	19240200	2R_19240200_SNP [dm3] 2R_23352677_SNP [dm6]	C	G	1.687e^-4	0.546	DOWNSTREAM CG34210 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19240636	2R_19240636_SNP [dm3] 2R_23353113_SNP [dm6]	A	G	1.687e^-4	0.546	DOWNSTREAM CG34210 INTERGENIC
3L	2915034	3L_2915034_SNP [dm3] 3L_2915034_SNP [dm6]	T	C	1.688e^-4	0.546	UTR_3_PRIME CG9970 INTRON Shab
3R	8582440	3R_8582440_SNP [dm3] 3R_12756718_SNP [dm6]	G	T	1.692e^-4	0.546	INTRON beat-Vc
X	12373177	X_12373177_SNP [dm3] X_12479144_SNP [dm6]	A	G	1.692e^-4	0.546	DOWNSTREAM CG42258 INTERGENIC
3R	20819947	3R_20819947_SNP [dm3] 3R_24994225_SNP [dm6]	G	A	1.697e^-4	0.546	INTRON tnc	TF binding site mE1_TFBS_cad
3R	20819954	3R_20819954_SNP [dm3] 3R_24994232_SNP [dm6]	A	C	1.697e^-4	0.546	INTRON tnc	TF binding site mE1_TFBS_cad
2R	20497486	2R_20497486_SNP [dm3] 2R_24609963_SNP [dm6]	C	T	1.697e^-4	0.546	SPLICE_SITE_REGION CG42360 DOWNSTREAM CG4741 INTRON CG42360	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5702851	2R_5702851_SNP [dm3] 2R_9815346_SNP [dm6]	G	A	1.703e^-4	0.547	UPSTREAM lectin-46Cb INTRON CG1648	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	16045036	2L_16045036_SNP [dm3] 2L_16045036_SNP [dm6]	T	G	1.709e^-4	0.548	INTRON BicC & 1 other
3R	8265543	3R_8265543_SNP [dm3] 3R_12439821_SNP [dm6]	A	C	1.711e^-4	0.548	UPSTREAM CG17207 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	6715384	3R_6715384_INS [dm3] 3R_10889662_INS [dm6]	T	TGTATAATTTCTTTTGAACT...	1.714e^-4	0.548	UPSTREAM Adk3 DOWNSTREAM CG6621 INTRON Leash	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18075171	3R_18075171_SNP [dm3] 3R_22249449_SNP [dm6]	A	G	1.717e^-4	0.548	INTRON SKIP
X	9666274	X_9666274_SNP [dm3] X_9772241_SNP [dm6]	T	C	1.730e^-4	0.549	INTERGENIC
3R	8884745	3R_8884745_SNP [dm3] 3R_13059023_SNP [dm6]	G	T	1.731e^-4	0.549	INTRON sim	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	21583931	3L_21583931_SNP [dm3] 3L_21590831_SNP [dm6]	G	C	1.733e^-4	0.549	INTRON TfAP-2
3L	3590870	3L_3590870_SNP [dm3] 3L_3590870_SNP [dm6]	T	C	1.734e^-4	0.549	INTRON Eip63E
2R	12327922	2R_12327922_SNP [dm3] 2R_16440417_SNP [dm6]	G	T	1.741e^-4	0.551	INTERGENIC
2L	10008514	2L_10008514_DEL [dm3] 2L_10008514_DEL [dm6]	TT	T	1.764e^-4	0.554	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
X	4444103	X_4444103_SNP [dm3] X_4550070_SNP [dm6]	A	T	1.766e^-4	0.554	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
2R	5747139	2R_5747139_SNP [dm3] 2R_9859634_SNP [dm6]	C	G	1.766e^-4	0.554	INTRON CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	16330609	3L_16330609_SNP [dm3] 3L_16337509_SNP [dm6]	A	T	1.769e^-4	0.554	INTERGENIC
2L	12119331	2L_12119331_SNP [dm3] 2L_12119331_SNP [dm6]	C	T	1.771e^-4	0.554	INTRON CG17211
3L	5648441	3L_5648441_SNP [dm3] 3L_5655341_SNP [dm6]	G	A	1.772e^-4	0.554	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17898542	2R_17898542_SNP [dm3] 2R_22011037_SNP [dm6]	T	C	1.775e^-4	0.554	INTRON CG34370
3R	6507814	3R_6507814_SNP [dm3] 3R_10682092_SNP [dm6]	A	T	1.781e^-4	0.554	UPSTREAM CR44230 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5706253	3L_5706253_SNP [dm3] 3L_5713153_SNP [dm6]	A	G	1.783e^-4	0.554	UPSTREAM CG44521 INTRON sif
3R	26068206	3R_26068206_SNP [dm3] 3R_30242484_SNP [dm6]	T	C	1.789e^-4	0.554	INTRON CG9737
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	1.791e^-4	0.554	INTRON Ca-beta
X	4861894	X_4861894_SNP [dm3] X_4967861_SNP [dm6]	A	T	1.798e^-4	0.554	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	556745	2L_556745_SNP [dm3] 2L_556745_SNP [dm6]	C	A	1.804e^-4	0.554	NON_SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8607961	3R_8607961_SNP [dm3] 3R_12782239_SNP [dm6]	C	A	1.808e^-4	0.554	INTRON beat-Vc
2R	12790548	2R_12790548_SNP [dm3] 2R_16903043_SNP [dm6]	T	C	1.811e^-4	0.554	INTERGENIC
X	6730833	X_6730833_SNP [dm3] X_6836800_SNP [dm6]	A	G	1.812e^-4	0.554	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_cad
3L	12985214	3L_12985214_SNP [dm3] 3L_12992114_SNP [dm6]	T	A	1.812e^-4	0.554	INTERGENIC
X	14874435	X_14874435_DEL [dm3] X_14980402_DEL [dm6]	AA	A	1.812e^-4	0.554	INTRON eag
2R	10069592	2R_10069592_SNP [dm3] 2R_14182087_SNP [dm6]	T	C	1.818e^-4	0.554	UTR_3_PRIME cg
2R	8430327	2R_8430327_SNP [dm3] 2R_12542822_SNP [dm6]	G	A	1.819e^-4	0.554	INTRON fra
2R	20009025	2R_20009025_SNP [dm3] 2R_24121502_SNP [dm6]	G	T	1.820e^-4	0.554	INTRON CG3257	TF binding site mE1_TFBS_chinmo
2R	20009042	2R_20009042_SNP [dm3] 2R_24121519_SNP [dm6]	T	A	1.820e^-4	0.554	INTRON CG3257	TF binding site mE1_TFBS_chinmo
3R	7755347	3R_7755347_SNP [dm3] 3R_11929625_SNP [dm6]	A	G	1.821e^-4	0.554	INTRON Cad87A
2L	13485370	2L_13485370_SNP [dm3] 2L_13485370_SNP [dm6]	A	G	1.826e^-4	0.554	INTRON CG42784
3R	6135425	3R_6135425_SNP [dm3] 3R_10309703_SNP [dm6]	A	G	1.828e^-4	0.554	SPLICE_SITE_REGION CG6293 INTRON CG6293
2R	8289964	2R_8289964_INS [dm3] 2R_12402459_INS [dm6]	G	GTG	1.829e^-4	0.554	INTRON Cpr49Ae
2L	15389563	2L_15389563_SNP [dm3] 2L_15389563_SNP [dm6]	A	C	1.839e^-4	0.555	INTERGENIC
2L	3883789	2L_3883789_SNP [dm3] 2L_3883789_SNP [dm6]	C	T	1.842e^-4	0.555	INTRON capu
2L	4931812	2L_4931812_SNP [dm3] 2L_4931812_SNP [dm6]	T	C	1.842e^-4	0.555	INTRON hoe1
2L	12260860	2L_12260860_SNP [dm3] 2L_12260860_SNP [dm6]	G	A	1.843e^-4	0.555	INTRON aret
X	16289991	X_16289991_SNP [dm3] X_16395958_SNP [dm6]	T	A	1.849e^-4	0.555	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
2R	5747086	2R_5747086_SNP [dm3] 2R_9859581_SNP [dm6]	C	T	1.851e^-4	0.555	INTRON CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11785157	2L_11785157_SNP [dm3] 2L_11785157_SNP [dm6]	A	G	1.854e^-4	0.555	INTERGENIC	TF binding site mE1_TFBS_inv
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	1.855e^-4	0.555	INTERGENIC
3R	14145413	3R_14145413_SNP [dm3] 3R_18319691_SNP [dm6]	T	C	1.864e^-4	0.556	INTRON CG31235
2R	5882844	2R_5882844_SNP [dm3] 2R_9995339_SNP [dm6]	T	C	1.867e^-4	0.556	UTR_3_PRIME Pka-R2 DOWNSTREAM Pka-R2
3L	16492368	3L_16492368_SNP [dm3] 3L_16499268_SNP [dm6]	G	A	1.867e^-4	0.556	SYNONYMOUS_CODING st INTRON CG43373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13370957	3R_13370957_INS [dm3] 3R_17545235_INS [dm6]	T	TCTAACATACAAAAAT...	1.872e^-4	0.556	UTR_3_PRIME Prx3 DOWNSTREAM SF1
X	2592246	X_2592246_SNP [dm3] X_2698213_SNP [dm6]	A	T	1.873e^-4	0.556	UPSTREAM CG2662 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9085532	3R_9085532_SNP [dm3] 3R_13259810_SNP [dm6]	C	T	1.887e^-4	0.557	UPSTREAM CG11686 & 1 other INTERGENIC
2L	11454725	2L_11454725_SNP [dm3] 2L_11454725_SNP [dm6]	G	A	1.895e^-4	0.557	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	11696208	2L_11696208_SNP [dm3] 2L_11696208_SNP [dm6]	T	A	1.897e^-4	0.557	DOWNSTREAM CG4988 INTERGENIC
3R	14333003	3R_14333003_SNP [dm3] 3R_18507281_SNP [dm6]	G	T	1.897e^-4	0.557	UPSTREAM fru INTRON fru	TF binding site mE1_TFBS_HSA
3R	7791700	3R_7791700_SNP [dm3] 3R_11965978_SNP [dm6]	G	A	1.899e^-4	0.557	SYNONYMOUS_CODING CG12213	TF binding site mE1_TFBS_cad
2R	5735679	2R_5735679_SNP [dm3] 2R_9848174_SNP [dm6]	T	C	1.904e^-4	0.557	UPSTREAM Prosalpha7 INTRON CG1671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	18836861	3L_18836861_SNP [dm3] 3L_18843761_SNP [dm6]	G	A	1.906e^-4	0.557	DOWNSTREAM CR32027 INTRON Indy
3R	19341259	3R_19341259_SNP [dm3] 3R_23515537_SNP [dm6]	G	A	1.908e^-4	0.557	INTRON Irk2
3R	19341279	3R_19341279_SNP [dm3] 3R_23515557_SNP [dm6]	G	A	1.908e^-4	0.557	INTRON Irk2
3R	19341288	3R_19341288_SNP [dm3] 3R_23515566_SNP [dm6]	C	G	1.908e^-4	0.557	INTRON Irk2
2L	12609672	2L_12609672_SNP [dm3] 2L_12609672_SNP [dm6]	T	A	1.909e^-4	0.557	DOWNSTREAM Ref2 INTRON nub	TF binding site BDTNP1_TFBS_dl
2L	11198315	2L_11198315_SNP [dm3] 2L_11198315_SNP [dm6]	T	G	1.912e^-4	0.557	INTRON Ca-beta
2R	5756249	2R_5756249_SNP [dm3] 2R_9868744_SNP [dm6]	G	T	1.916e^-4	0.557	INTRON cbx EXON CR45138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16330591	3L_16330591_SNP [dm3] 3L_16337491_SNP [dm6]	A	G	1.917e^-4	0.557	INTERGENIC
2R	5702517	2R_5702517_SNP [dm3] 2R_9815012_SNP [dm6]	G	T	1.922e^-4	0.557	UPSTREAM lectin-46Cb INTRON CG1648
2L	11442658	2L_11442658_SNP [dm3] 2L_11442658_SNP [dm6]	C	A	1.927e^-4	0.557	INTRON salm
2L	14782756	2L_14782756_SNP [dm3] 2L_14782756_SNP [dm6]	A	G	1.930e^-4	0.557	DOWNSTREAM CG18636 INTRON CR15280
3R	6573840	3R_6573840_SNP [dm3] 3R_10748118_SNP [dm6]	T	G	1.932e^-4	0.557	INTRON TkR86C
2L	11553642	2L_11553642_SNP [dm3] 2L_11553642_SNP [dm6]	C	T	1.935e^-4	0.557	INTERGENIC
3R	7138798	3R_7138798_SNP [dm3] 3R_11313076_SNP [dm6]	G	A	1.943e^-4	0.557	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12621807	X_12621807_SNP [dm3] X_12727774_SNP [dm6]	G	A	1.943e^-4	0.557	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18850157	3L_18850157_SNP [dm3] 3L_18857057_SNP [dm6]	G	A	1.945e^-4	0.557	EXON CR45388
3L	3802349	3L_3802349_SNP [dm3] 3L_3802349_SNP [dm6]	G	A	1.945e^-4	0.557	INTRON CG32264
2L	9982644	2L_9982644_SNP [dm3] 2L_9982644_SNP [dm6]	T	G	1.950e^-4	0.557	INTERGENIC	regulatory region REDfly_CRMs
3R	8890447	3R_8890447_DEL [dm3] 3R_13064725_DEL [dm6]	GCCC	G	1.960e^-4	0.557	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	9967584	2L_9967584_SNP [dm3] 2L_9967584_SNP [dm6]	G	A	1.962e^-4	0.557	UTR_5_PRIME RpL13 UPSTREAM Dref INTRON RpL13	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19670878	2R_19670878_SNP [dm3] 2R_23783355_SNP [dm6]	T	C	1.963e^-4	0.557	INTRON CG9850
3R	8459722	3R_8459722_SNP [dm3] 3R_12634000_SNP [dm6]	G	A	1.964e^-4	0.557	SYNONYMOUS_CODING CG18530 UPSTREAM CG11598 DOWNSTREAM Not10
2L	10779979	2L_10779979_SNP [dm3] 2L_10779979_SNP [dm6]	C	T	1.964e^-4	0.557	INTRON CG31869
3L	18372301	3L_18372301_SNP [dm3] 3L_18379201_SNP [dm6]	C	A	1.966e^-4	0.557	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	3815096	2R_3815096_SNP [dm3] 2R_7927591_SNP [dm6]	C	G	1.968e^-4	0.557	START_GAINED CG8791 UTR_5_PRIME CG8791 UPSTREAM CG8791 INTRON CG8791
3R	19341286	3R_19341286_SNP [dm3] 3R_23515564_SNP [dm6]	T	A	1.975e^-4	0.558	INTRON Irk2
3R	8978787	3R_8978787_SNP [dm3] 3R_13153065_SNP [dm6]	C	T	1.983e^-4	0.558	INTRON timeout & 2 others
2R	5749376	2R_5749376_SNP [dm3] 2R_9861871_SNP [dm6]	G	A	1.985e^-4	0.558	UPSTREAM CG1516 DOWNSTREAM CR44293 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8814616	X_8814616_SNP [dm3] X_8920583_SNP [dm6]	T	C	1.988e^-4	0.558	UPSTREAM CR44111 INTRON rdgA
2L	12566460	2L_12566460_SNP [dm3] 2L_12566460_SNP [dm6]	T	G	1.990e^-4	0.558	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6223601	3L_6223601_SNP [dm3] 3L_6230501_SNP [dm6]	A	G	1.999e^-4	0.558	INTERGENIC
3L	4356084	3L_4356084_SNP [dm3] 3L_4356084_SNP [dm6]	T	G	2.000e^-4	0.558	INTRON Cip4
2R	12116015	2R_12116015_SNP [dm3] 2R_16228510_SNP [dm6]	G	A	2.010e^-4	0.558	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11441890	2L_11441890_DEL [dm3] 2L_11441890_DEL [dm6]	TGGATTT	T	2.011e^-4	0.558	INTRON salm	TF binding site mE1_TFBS_inv
X	14545710	X_14545710_SNP [dm3] X_14651677_SNP [dm6]	C	A	2.011e^-4	0.558	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3895062	3L_3895062_SNP [dm3] 3L_3895062_SNP [dm6]	G	A	2.013e^-4	0.558	SYNONYMOUS_CODING Gr63a DOWNSTREAM Fie
3R	8380743	3R_8380743_DEL [dm3] 3R_12555021_DEL [dm6]	TT	T	2.016e^-4	0.558	INTRON Octbeta2R
2L	2959527	2L_2959527_SNP [dm3] 2L_2959527_SNP [dm6]	T	C	2.021e^-4	0.558	INTRON Rbp9
3R	13826426	3R_13826426_SNP [dm3] 3R_18000704_SNP [dm6]	A	T	2.024e^-4	0.558	INTRON cpo
X	16897236	X_16897236_DEL [dm3] X_17003203_DEL [dm6]	ACTCGA	A	2.028e^-4	0.558	INTRON CG45002
X	5549234	X_5549234_SNP [dm3] X_5655201_SNP [dm6]	A	T	2.030e^-4	0.558	INTRON CG42265
X	6879912	X_6879912_SNP [dm3] X_6985879_SNP [dm6]	G	A	2.033e^-4	0.558	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	18012202	2R_18012202_DEL [dm3] 2R_22124697_DEL [dm6]	ACAATTA	A	2.034e^-4	0.558	UTR_3_PRIME GM130 DOWNSTREAM mei-S332	TF binding site mE1_TFBS_cad
3R	8139696	3R_8139696_SNP [dm3] 3R_12313974_SNP [dm6]	G	C	2.037e^-4	0.558	DOWNSTREAM CG4066 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3812652	2R_3812652_SNP [dm3] 2R_7925147_SNP [dm6]	A	C	2.037e^-4	0.558	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	4861910	X_4861910_SNP [dm3] X_4967877_SNP [dm6]	T	A	2.042e^-4	0.558	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18466441	2R_18466441_SNP [dm3] 2R_22578936_SNP [dm6]	T	C	2.043e^-4	0.558	INTRON dnr1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5480787	X_5480787_SNP [dm3] X_5586754_SNP [dm6]	G	A	2.048e^-4	0.558	INTERGENIC
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	2.048e^-4	0.558	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16161347	2L_16161347_SNP [dm3] 2L_16161347_SNP [dm6]	C	A	2.052e^-4	0.558	INTERGENIC
3R	14451878	3R_14451878_SNP [dm3] 3R_18626156_SNP [dm6]	A	T	2.061e^-4	0.558	INTRON qin
3R	7002414	3R_7002414_SNP [dm3] 3R_11176692_SNP [dm6]	A	C	2.063e^-4	0.558	SYNONYMOUS_CODING Ugt86Dh
3L	19414987	3L_19414987_SNP [dm3] 3L_19421887_SNP [dm6]	G	A	2.066e^-4	0.558	DOWNSTREAM CR32205 INTERGENIC
3R	13087936	3R_13087936_SNP [dm3] 3R_17262214_SNP [dm6]	A	G	2.067e^-4	0.558	INTRON beat-IIb
3R	8890435	3R_8890435_SNP [dm3] 3R_13064713_SNP [dm6]	C	T	2.074e^-4	0.558	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	15065650	3R_15065650_INS [dm3] 3R_19239928_INS [dm6]	T	TT	2.078e^-4	0.558	INTRON unc79
3R	8657751	3R_8657751_DEL [dm3] 3R_12832029_DEL [dm6]	TTTGATT	T	2.080e^-4	0.558	INTERGENIC
X	19662291	X_19662291_SNP [dm3] X_19768258_SNP [dm6]	A	T	2.081e^-4	0.558	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19242268	2R_19242268_SNP [dm3] 2R_23354745_SNP [dm6]	T	G	2.084e^-4	0.558	NON_SYNONYMOUS_CODING CG30409 UPSTREAM Rpi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8473686	3L_8473686_SNP [dm3] 3L_8480586_SNP [dm6]	G	A	2.085e^-4	0.558	SYNONYMOUS_CODING CG43163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	6507828	3R_6507828_SNP [dm3] 3R_10682106_SNP [dm6]	A	T	2.087e^-4	0.558	UPSTREAM CR44230 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4861899	X_4861899_SNP [dm3] X_4967866_SNP [dm6]	C	A	2.088e^-4	0.558	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	920537	3L_920537_SNP [dm3] 3L_920537_SNP [dm6]	T	G	2.090e^-4	0.558	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7844114	3R_7844114_SNP [dm3] 3R_12018392_SNP [dm6]	C	G	2.093e^-4	0.558	UTR_3_PRIME Spt3	TF binding site mE1_TFBS_chinmo
3R	19342916	3R_19342916_SNP [dm3] 3R_23517194_SNP [dm6]	A	C	2.100e^-4	0.558	INTRON Irk2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	18982406	3R_18982406_SNP [dm3] 3R_23156684_SNP [dm6]	A	T	2.102e^-4	0.558	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
X	5480822	X_5480822_SNP [dm3] X_5586789_SNP [dm6]	A	T	2.105e^-4	0.558	INTERGENIC
3R	26405760	3R_26405760_SNP [dm3] 3R_30580038_SNP [dm6]	T	A	2.109e^-4	0.558	INTRON CG9702	TF binding site mE1_TFBS_HSA
2L	15854328	2L_15854328_SNP [dm3] 2L_15854328_SNP [dm6]	G	C	2.110e^-4	0.558	UTR_5_PRIME Tektin-A DOWNSTREAM CG13243
2R	11839111	2R_11839111_SNP [dm3] 2R_15951606_SNP [dm6]	A	G	2.111e^-4	0.558	UPSTREAM Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck
2L	9127587	2L_9127587_SNP [dm3] 2L_9127587_SNP [dm6]	A	T	2.117e^-4	0.558	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2L	11198373	2L_11198373_SNP [dm3] 2L_11198373_SNP [dm6]	A	T	2.123e^-4	0.558	INTRON Ca-beta
2R	18015169	2R_18015169_SNP [dm3] 2R_22127664_SNP [dm6]	A	G	2.123e^-4	0.558	UPSTREAM NtR & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	8977137	3R_8977137_DEL [dm3] 3R_13151415_DEL [dm6]	AGTGTGTAATATTTTTCGCT...	GTTCG	2.124e^-4	0.558	INTRON timeout & 2 others
2L	14783992	2L_14783992_SNP [dm3] 2L_14783992_SNP [dm6]	C	T	2.125e^-4	0.558	NON_SYNONYMOUS_CODING CG18636 SPLICE_SITE_REGION CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18156333	3R_18156333_SNP [dm3] 3R_22330611_SNP [dm6]	C	G	2.125e^-4	0.558	UPSTREAM CG33721 DOWNSTREAM CG7080 INTERGENIC	TF binding site mE1_TFBS_cad
X	4861908	X_4861908_SNP [dm3] X_4967875_SNP [dm6]	G	T	2.133e^-4	0.56	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11198319	2L_11198319_SNP [dm3] 2L_11198319_SNP [dm6]	A	T	2.140e^-4	0.56	INTRON Ca-beta
3R	6568138	3R_6568138_SNP [dm3] 3R_10742416_SNP [dm6]	C	T	2.142e^-4	0.56	INTRON TkR86C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	22842996	3L_22842996_SNP [dm3] 3L_22849896_SNP [dm6]	G	A	2.143e^-4	0.56	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8607948	3R_8607948_SNP [dm3] 3R_12782226_SNP [dm6]	C	T	2.154e^-4	0.561	INTRON beat-Vc
3R	3205092	3R_3205092_SNP [dm3] 3R_7379370_SNP [dm6]	A	C	2.162e^-4	0.561	INTERGENIC
2R	15426647	2R_15426647_SNP [dm3] 2R_19539142_SNP [dm6]	A	G	2.165e^-4	0.561	INTRON sm
3R	5991628	3R_5991628_SNP [dm3] 3R_10165906_SNP [dm6]	G	C	2.167e^-4	0.561	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12309708	2L_12309708_SNP [dm3] 2L_12309708_SNP [dm6]	T	C	2.169e^-4	0.561	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5748355	2R_5748355_SNP [dm3] 2R_9860850_SNP [dm6]	G	C	2.169e^-4	0.561	UPSTREAM CR44293 & 1 other INTRON CG1516	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	10900513	2L_10900513_SNP [dm3] 2L_10900513_SNP [dm6]	C	A	2.170e^-4	0.561	UTR_3_PRIME CG14070 DOWNSTREAM CG14070
3L	14189216	3L_14189216_SNP [dm3] 3L_14196116_SNP [dm6]	C	A	2.174e^-4	0.561	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2591660	X_2591660_SNP [dm3] X_2697627_SNP [dm6]	G	T	2.178e^-4	0.561	SYNONYMOUS_CODING CG2658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3R	8994351	3R_8994351_SNP [dm3] 3R_13168629_SNP [dm6]	T	C	2.178e^-4	0.561	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18382932	2R_18382932_DEL [dm3] 2R_22495427_DEL [dm6]	GC	G	2.181e^-4	0.561	UTR_3_PRIME px
3L	3981408	3L_3981408_SNP [dm3] 3L_3981408_SNP [dm6]	A	G	2.187e^-4	0.561	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2R	12116087	2R_12116087_SNP [dm3] 2R_16228582_SNP [dm6]	T	C	2.191e^-4	0.561	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19341289	3R_19341289_SNP [dm3] 3R_23515567_SNP [dm6]	T	A	2.194e^-4	0.561	INTRON Irk2
3R	9000985	3R_9000985_SNP [dm3] 3R_13175263_SNP [dm6]	G	A	2.196e^-4	0.561	INTERGENIC
3L	16330592	3L_16330592_SNP [dm3] 3L_16337492_SNP [dm6]	T	A	2.206e^-4	0.561	INTERGENIC
X	20551071	X_20551071_SNP [dm3] X_20680044_SNP [dm6]	T	A	2.209e^-4	0.561	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	5828599	X_5828599_INS [dm3] X_5934566_INS [dm6]	A	AA	2.213e^-4	0.561	INTRON CG3726
3L	8698526	3L_8698526_SNP [dm3] 3L_8705426_SNP [dm6]	C	T	2.218e^-4	0.561	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10824324	2L_10824324_SNP [dm3] 2L_10824324_SNP [dm6]	G	A	2.228e^-4	0.561	INTRON Nos
2L	8759593	2L_8759593_SNP [dm3] 2L_8759593_SNP [dm6]	A	G	2.230e^-4	0.561	INTERGENIC
3R	12651122	3R_12651122_SNP [dm3] 3R_16825400_SNP [dm6]	T	A	2.237e^-4	0.561	INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8866095	2L_8866095_SNP [dm3] 2L_8866095_SNP [dm6]	G	T	2.244e^-4	0.561	SYNONYMOUS_CODING CG32983 UPSTREAM CG9483 DOWNSTREAM CG32988 EXON CR45260	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	11442836	2L_11442836_SNP [dm3] 2L_11442836_SNP [dm6]	G	A	2.247e^-4	0.561	INTRON salm
3R	6858443	3R_6858443_SNP [dm3] 3R_11032721_SNP [dm6]	G	A	2.249e^-4	0.561	INTRON CG34114
3R	14145195	3R_14145195_SNP [dm3] 3R_18319473_SNP [dm6]	T	C	2.254e^-4	0.561	INTRON CG31235
2L	19412298	2L_19412298_DEL [dm3] 2L_19412298_DEL [dm6]	ATAATAGCATTAATTACAA...	A	2.258e^-4	0.561	UPSTREAM Pax INTRON Pax
2L	3567642	2L_3567642_SNP [dm3] 2L_3567642_SNP [dm6]	T	C	2.258e^-4	0.561	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13722941	3L_13722941_SNP [dm3] 3L_13729841_SNP [dm6]	A	T	2.262e^-4	0.561	INTRON bru-3
3L	10167431	3L_10167431_SNP [dm3] 3L_10174331_SNP [dm6]	T	A	2.263e^-4	0.561	INTRON dpr10
2R	16966225	2R_16966225_SNP [dm3] 2R_21078720_SNP [dm6]	A	C	2.267e^-4	0.561	INTRON Treh
2R	3811827	2R_3811827_SNP [dm3] 2R_7924322_SNP [dm6]	G	T	2.268e^-4	0.561	NON_SYNONYMOUS_CODING Kdm4A	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
3R	8347006	3R_8347006_SNP [dm3] 3R_12521284_SNP [dm6]	T	A	2.271e^-4	0.561	INTRON Octbeta3R	TF binding site mE1_TFBS_cad
3R	25649406	3R_25649406_SNP [dm3] 3R_29823684_SNP [dm6]	C	G	2.276e^-4	0.561	INTRON neo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11603938	2R_11603938_SNP [dm3] 2R_15716433_SNP [dm6]	C	T	2.276e^-4	0.561	INTERGENIC
X	15147256	X_15147256_SNP [dm3] X_15253223_SNP [dm6]	T	A	2.276e^-4	0.561	INTERGENIC
3L	16330552	3L_16330552_SNP [dm3] 3L_16337452_SNP [dm6]	T	A	2.280e^-4	0.561	INTERGENIC
3R	20777628	3R_20777628_SNP [dm3] 3R_24951906_SNP [dm6]	A	T	2.282e^-4	0.561	INTERGENIC
X	9666190	X_9666190_SNP [dm3] X_9772157_SNP [dm6]	T	G	2.282e^-4	0.561	INTERGENIC
2L	10174800	2L_10174800_SNP [dm3] 2L_10174800_SNP [dm6]	A	T	2.284e^-4	0.561	DOWNSTREAM CG13137 INTRON CG44153
2L	10174801	2L_10174801_SNP [dm3] 2L_10174801_SNP [dm6]	C	T	2.284e^-4	0.561	DOWNSTREAM CG13137 INTRON CG44153
3R	20169559	3R_20169559_DEL [dm3] 3R_24343837_DEL [dm6]	GTTTATATAGTCAAT...	G	2.286e^-4	0.561	DOWNSTREAM CG5746 & 1 other INTERGENIC
3L	9607130	3L_9607130_DEL [dm3] 3L_9614030_DEL [dm6]	CA	T	2.286e^-4	0.561	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	11198374	2L_11198374_SNP [dm3] 2L_11198374_SNP [dm6]	A	T	2.287e^-4	0.561	INTRON Ca-beta
3R	19341277	3R_19341277_SNP [dm3] 3R_23515555_SNP [dm6]	T	G	2.288e^-4	0.561	INTRON Irk2
3L	16330530	3L_16330530_SNP [dm3] 3L_16337430_SNP [dm6]	G	A	2.299e^-4	0.561	INTERGENIC
3R	5776937	3R_5776937_SNP [dm3] 3R_9951215_SNP [dm6]	A	G	2.302e^-4	0.561	INTRON Glut4EF
2L	507635	2L_507635_SNP [dm3] 2L_507635_SNP [dm6]	A	C	2.304e^-4	0.561	INTRON ush
3R	27151784	3R_27151784_SNP [dm3] 3R_31326062_SNP [dm6]	A	G	2.304e^-4	0.561	INTRON CG34347
X	2591831	X_2591831_SNP [dm3] X_2697798_SNP [dm6]	G	T	2.304e^-4	0.561	UPSTREAM CG2662 INTRON CG2658	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3R	18982407	3R_18982407_SNP [dm3] 3R_23156685_SNP [dm6]	A	T	2.308e^-4	0.561	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	8538952	3R_8538952_SNP [dm3] 3R_12713230_SNP [dm6]	G	C	2.309e^-4	0.561	UTR_3_PRIME Men UPSTREAM mus308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sbb
2L	11446429	2L_11446429_SNP [dm3] 2L_11446429_SNP [dm6]	G	T	2.311e^-4	0.561	UPSTREAM salm INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11354610	2L_11354610_SNP [dm3] 2L_11354610_SNP [dm6]	C	A	2.312e^-4	0.561	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2L	10008502	2L_10008502_SNP [dm3] 2L_10008502_SNP [dm6]	A	C	2.312e^-4	0.561	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
3R	19341056	3R_19341056_SNP [dm3] 3R_23515334_SNP [dm6]	C	T	2.320e^-4	0.562	SYNONYMOUS_CODING Irk2
X	14763147	X_14763147_SNP [dm3] X_14869114_SNP [dm6]	T	C	2.326e^-4	0.563	INTRON Flo2 & 1 other
3L	3802464	3L_3802464_SNP [dm3] 3L_3802464_SNP [dm6]	A	C	2.331e^-4	0.564	INTRON CG32264
3L	5951239	3L_5951239_SNP [dm3] 3L_5958139_SNP [dm6]	C	G	2.340e^-4	0.565	INTERGENIC
2L	11364177	2L_11364177_SNP [dm3] 2L_11364177_SNP [dm6]	A	C	2.347e^-4	0.565	INTRON salr	TF binding site mE1_TFBS_HSA
3L	14189504	3L_14189504_SNP [dm3] 3L_14196404_SNP [dm6]	A	T	2.350e^-4	0.565	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	5719753	2R_5719753_SNP [dm3] 2R_9832248_SNP [dm6]	A	G	2.351e^-4	0.565	UPSTREAM hebe INTRON hebe
2L	262249	2L_262249_SNP [dm3] 2L_262249_SNP [dm6]	A	T	2.356e^-4	0.565	UTR_3_PRIME CG17075 INTRON CG3645 EXON CR44219
3L	3518119	3L_3518119_SNP [dm3] 3L_3518119_SNP [dm6]	G	A	2.357e^-4	0.565	INTRON Eip63E
3L	9693585	3L_9693585_SNP [dm3] 3L_9700485_SNP [dm6]	A	G	2.363e^-4	0.565	DOWNSTREAM CG6761 & 1 other INTERGENIC
3L	1254004	3L_1254004_SNP [dm3] 3L_1254004_SNP [dm6]	A	C	2.364e^-4	0.565	INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
3R	6858484	3R_6858484_SNP [dm3] 3R_11032762_SNP [dm6]	G	A	2.365e^-4	0.565	INTRON CG34114
2L	6477589	2L_6477589_SNP [dm3] 2L_6477589_SNP [dm6]	G	A	2.367e^-4	0.565	UTR_3_PRIME Sec61alpha UPSTREAM CG9536	TF binding site mE1_TFBS_HSA
2L	11415231	2L_11415231_SNP [dm3] 2L_11415231_SNP [dm6]	A	T	2.373e^-4	0.566	INTERGENIC
3L	2882500	3L_2882500_SNP [dm3] 3L_2882500_SNP [dm6]	G	A	2.378e^-4	0.566	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
2L	14630873	2L_14630873_SNP [dm3] 2L_14630873_SNP [dm6]	C	T	2.389e^-4	0.567	INTRON osp
2L	9962740	2L_9962740_SNP [dm3] 2L_9962740_SNP [dm6]	G	T	2.391e^-4	0.567	SYNONYMOUS_CODING CG5850 DOWNSTREAM CR43683	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	12567007	3R_12567007_SNP [dm3] 3R_16741285_SNP [dm6]	T	A	2.395e^-4	0.567	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12567038	3R_12567038_SNP [dm3] 3R_16741316_SNP [dm6]	G	A	2.395e^-4	0.567	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	13706523	X_13706523_SNP [dm3] X_13812490_SNP [dm6]	A	G	2.397e^-4	0.567	SYNONYMOUS_CODING CG11095 DOWNSTREAM inaE & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10998575	2R_10998575_SNP [dm3] 2R_15111070_SNP [dm6]	T	G	2.400e^-4	0.567	INTERGENIC
X	1275150	X_1275150_SNP [dm3] X_1381117_SNP [dm6]	T	C	2.405e^-4	0.567	UTR_5_PRIME CG32813 UPSTREAM CG3719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7138756	3R_7138756_SNP [dm3] 3R_11313034_SNP [dm6]	T	C	2.407e^-4	0.567	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11182397	2L_11182397_SNP [dm3] 2L_11182397_SNP [dm6]	C	T	2.410e^-4	0.567	INTRON Ca-beta
3L	3800672	3L_3800672_SNP [dm3] 3L_3800672_SNP [dm6]	G	C	2.416e^-4	0.567	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	495044	2L_495044_SNP [dm3] 2L_495044_SNP [dm6]	G	T	2.418e^-4	0.567	INTRON ush
2L	18640680	2L_18640680_SNP [dm3] 2L_18640680_SNP [dm6]	T	A	2.418e^-4	0.567	INTRON MESR3
2L	2605671	2L_2605671_SNP [dm3] 2L_2605671_SNP [dm6]	T	C	2.420e^-4	0.567	INTERGENIC
3L	16330555	3L_16330555_DEL [dm3] 3L_16337455_DEL [dm6]	TTA	GC	2.422e^-4	0.567	INTERGENIC
X	4861904	X_4861904_SNP [dm3] X_4967871_SNP [dm6]	T	G	2.428e^-4	0.567	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14189540	3L_14189540_SNP [dm3] 3L_14196440_SNP [dm6]	T	C	2.429e^-4	0.567	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	496329	2L_496329_SNP [dm3] 2L_496329_SNP [dm6]	G	A	2.453e^-4	0.571	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5060918	3L_5060918_SNP [dm3] 3L_5060918_SNP [dm6]	A	G	2.454e^-4	0.571	INTRON Con
X	14545629	X_14545629_DEL [dm3] X_14651596_DEL [dm6]	TGT	T	2.458e^-4	0.571	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	4862020	X_4862020_SNP [dm3] X_4967987_SNP [dm6]	C	T	2.459e^-4	0.571	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3800669	3L_3800669_SNP [dm3] 3L_3800669_SNP [dm6]	G	T	2.462e^-4	0.571	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8194981	3R_8194981_DEL [dm3] 3R_12369259_DEL [dm6]	ACTGAACGGAATTCGAAGAG...	A	2.471e^-4	0.572	UTR_5_PRIME GstD1 UPSTREAM GstD1 INTRAGENIC GstD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5611640	X_5611640_SNP [dm3] X_5717607_SNP [dm6]	A	G	2.484e^-4	0.574	SYNONYMOUS_CODING CG33080	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7633265	3R_7633265_INS [dm3] 3R_11807543_INS [dm6]	T	TA	2.490e^-4	0.574	UPSTREAM ClC-a INTRON ClC-a
2R	8430278	2R_8430278_SNP [dm3] 2R_12542773_SNP [dm6]	G	A	2.491e^-4	0.574	INTRON fra
3R	7002225	3R_7002225_SNP [dm3] 3R_11176503_SNP [dm6]	A	C	2.493e^-4	0.574	SYNONYMOUS_CODING Ugt86Dh
3R	3205159	3R_3205159_SNP [dm3] 3R_7379437_SNP [dm6]	A	G	2.498e^-4	0.575	INTERGENIC
3R	8644897	3R_8644897_DEL [dm3] 3R_12819175_DEL [dm6]	AA	A	2.513e^-4	0.577	INTERGENIC
2L	7958139	2L_7958139_SNP [dm3] 2L_7958139_SNP [dm6]	A	T	2.514e^-4	0.577	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14189503	3L_14189503_SNP [dm3] 3L_14196403_SNP [dm6]	G	A	2.515e^-4	0.577	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	15160692	X_15160692_SNP [dm3] X_15266659_SNP [dm6]	A	G	2.532e^-4	0.579	INTERGENIC
2R	11641380	2R_11641380_SNP [dm3] 2R_15753875_SNP [dm6]	T	A	2.534e^-4	0.579	INTRON CG30089	TF binding site BDTNP1_TFBS_twi
2L	13485378	2L_13485378_SNP [dm3] 2L_13485378_SNP [dm6]	T	A	2.536e^-4	0.579	INTRON CG42784
3L	9328580	3L_9328580_SNP [dm3] 3L_9335480_SNP [dm6]	T	C	2.541e^-4	0.579	UPSTREAM PGRP-LA INTRON PGRP-LA
3R	6574254	3R_6574254_SNP [dm3] 3R_10748532_SNP [dm6]	T	C	2.544e^-4	0.579	INTRON TkR86C
X	18350724	X_18350724_SNP [dm3] X_18456691_SNP [dm6]	A	G	2.544e^-4	0.579	INTRON CG32547
2L	14783090	2L_14783090_SNP [dm3] 2L_14783090_SNP [dm6]	G	T	2.554e^-4	0.58	DOWNSTREAM CG18636 EXON CR15280
3L	3645429	3L_3645429_SNP [dm3] 3L_3645429_SNP [dm6]	A	G	2.555e^-4	0.58	INTRON dar1	TF binding site BDTNP1_TFBS_da
3L	9998968	3L_9998968_SNP [dm3] 3L_10005868_SNP [dm6]	C	A	2.563e^-4	0.581	INTRON dpr6
2L	5756932	2L_5756932_SNP [dm3] 2L_5756932_SNP [dm6]	T	G	2.570e^-4	0.581	INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5411648	3R_5411648_SNP [dm3] 3R_9585926_SNP [dm6]	C	T	2.571e^-4	0.581	INTRON CG8301
3R	8580640	3R_8580640_SNP [dm3] 3R_12754918_SNP [dm6]	A	T	2.573e^-4	0.581	INTRON beat-Vc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8289946	2R_8289946_SNP [dm3] 2R_12402441_SNP [dm6]	A	G	2.576e^-4	0.581	INTRON Cpr49Ae
2R	19664210	2R_19664210_SNP [dm3] 2R_23776687_SNP [dm6]	A	G	2.576e^-4	0.581	INTRON CG9850
3L	16330645	3L_16330645_SNP [dm3] 3L_16337545_SNP [dm6]	T	C	2.579e^-4	0.581	INTERGENIC
2R	11610399	2R_11610399_SNP [dm3] 2R_15722894_SNP [dm6]	A	T	2.587e^-4	0.581	INTERGENIC
2R	3812806	2R_3812806_SNP [dm3] 2R_7925301_SNP [dm6]	T	G	2.591e^-4	0.581	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	12466628	2L_12466628_SNP [dm3] 2L_12466628_SNP [dm6]	G	A	2.597e^-4	0.581	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4010000	2L_4010000_SNP [dm3] 2L_4010000_SNP [dm6]	C	T	2.599e^-4	0.581	DOWNSTREAM CG43774 INTERGENIC
X	4861907	X_4861907_SNP [dm3] X_4967874_SNP [dm6]	G	T	2.600e^-4	0.581	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12791375	2R_12791375_SNP [dm3] 2R_16903870_SNP [dm6]	T	G	2.603e^-4	0.581	INTERGENIC	TF binding site mE1_TFBS_inv
3R	8863784	3R_8863784_SNP [dm3] 3R_13038062_SNP [dm6]	G	T	2.605e^-4	0.581	UPSTREAM CG11668 DOWNSTREAM ry INTERGENIC
3R	8246176	3R_8246176_SNP [dm3] 3R_12420454_SNP [dm6]	A	T	2.611e^-4	0.581	DOWNSTREAM Scgbeta INTRON pps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14023413	2R_14023413_SNP [dm3] 2R_18135908_SNP [dm6]	C	A	2.611e^-4	0.581	UTR_5_PRIME Pcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5227843	2L_5227843_SNP [dm3] 2L_5227843_SNP [dm6]	G	A	2.612e^-4	0.581	INTRON tkv
2R	5749197	2R_5749197_SNP [dm3] 2R_9861692_SNP [dm6]	A	G	2.613e^-4	0.581	UPSTREAM CG1516 DOWNSTREAM CR44293 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20204289	2R_20204289_SNP [dm3] 2R_24316766_SNP [dm6]	G	T	2.622e^-4	0.582	INTERGENIC
X	6242537	X_6242537_SNP [dm3] X_6348504_SNP [dm6]	C	T	2.627e^-4	0.582	SYNONYMOUS_CODING CG3847 DOWNSTREAM CG3446	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	5438394	3R_5438394_SNP [dm3] 3R_9612672_SNP [dm6]	C	A	2.630e^-4	0.582	INTRON CG8312
3R	26456168	3R_26456168_SNP [dm3] 3R_30630446_SNP [dm6]	T	C	2.636e^-4	0.583	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7315565	3R_7315565_SNP [dm3] 3R_11489843_SNP [dm6]	T	A	2.641e^-4	0.583	INTERGENIC
3L	4407090	3L_4407090_SNP [dm3] 3L_4407090_SNP [dm6]	A	T	2.646e^-4	0.583	UPSTREAM DOR INTRON DOR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
X	14545736	X_14545736_SNP [dm3] X_14651703_SNP [dm6]	C	T	2.648e^-4	0.583	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2474704	3L_2474704_INS [dm3] 3L_2474704_INS [dm6]	G	TA	2.651e^-4	0.583	UTR_3_PRIME CG16762 INTRON CG45186
2L	1033969	2L_1033969_SNP [dm3] 2L_1033969_SNP [dm6]	T	C	2.651e^-4	0.583	NON_SYNONYMOUS_CODING IA-2
2R	10072435	2R_10072435_SNP [dm3] 2R_14184930_SNP [dm6]	G	A	2.656e^-4	0.583	UPSTREAM CG30069 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9059565	3R_9059565_SNP [dm3] 3R_13233843_SNP [dm6]	A	G	2.658e^-4	0.583	INTRON Ace
2L	11695237	2L_11695237_SNP [dm3] 2L_11695237_SNP [dm6]	T	A	2.670e^-4	0.584	INTRON CG4988
2L	13482138	2L_13482138_SNP [dm3] 2L_13482138_SNP [dm6]	A	G	2.671e^-4	0.584	INTRON CG42784
2R	17583811	2R_17583811_SNP [dm3] 2R_21696306_SNP [dm6]	T	C	2.675e^-4	0.584	UPSTREAM CngB INTRON CngB	TF binding site mE1_TFBS_cad
2R	17583833	2R_17583833_SNP [dm3] 2R_21696328_SNP [dm6]	G	A	2.675e^-4	0.584	UPSTREAM CngB INTRON CngB	TF binding site mE1_TFBS_cad
X	15159530	X_15159530_DEL [dm3] X_15265497_DEL [dm6]	CC	C	2.679e^-4	0.584	INTERGENIC
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	2.683e^-4	0.584	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	1590923	3L_1590923_SNP [dm3] 3L_1590923_SNP [dm6]	C	G	2.686e^-4	0.584	INTRON CG13917
2R	5746982	2R_5746982_SNP [dm3] 2R_9859477_SNP [dm6]	A	T	2.690e^-4	0.585	INTRON CG1516	TF binding site mE1_TFBS_inv
3L	2044254	3L_2044254_SNP [dm3] 3L_2044254_SNP [dm6]	C	T	2.699e^-4	0.586	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18831598	3L_18831598_SNP [dm3] 3L_18838498_SNP [dm6]	A	T	2.706e^-4	0.587	INTRON Indy	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5627915	3L_5627915_SNP [dm3] 3L_5634815_SNP [dm6]	C	T	2.713e^-4	0.588	INTRON Blimp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	8743846	3R_8743846_SNP [dm3] 3R_12918124_SNP [dm6]	T	A	2.727e^-4	0.589	INTRON beat-Vb
3L	3624184	3L_3624184_SNP [dm3] 3L_3624184_SNP [dm6]	G	A	2.729e^-4	0.589	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11182393	2L_11182393_SNP [dm3] 2L_11182393_SNP [dm6]	T	C	2.730e^-4	0.589	INTRON Ca-beta
3R	19341284	3R_19341284_SNP [dm3] 3R_23515562_SNP [dm6]	G	A	2.753e^-4	0.593	INTRON Irk2
2L	11472129	2L_11472129_SNP [dm3] 2L_11472129_SNP [dm6]	A	G	2.756e^-4	0.593	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9214364	2L_9214364_SNP [dm3] 2L_9214364_SNP [dm6]	A	G	2.759e^-4	0.593	INTRON tai
2L	19336139	2L_19336139_SNP [dm3] 2L_19336139_SNP [dm6]	T	C	2.766e^-4	0.593	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8981995	3R_8981995_SNP [dm3] 3R_13156273_SNP [dm6]	G	A	2.766e^-4	0.593	UPSTREAM 2mit & 1 other INTRON timeout	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12766090	2R_12766090_SNP [dm3] 2R_16878585_SNP [dm6]	C	T	2.768e^-4	0.593	INTRON CG8910
2L	11010697	2L_11010697_SNP [dm3] 2L_11010697_SNP [dm6]	C	A	2.769e^-4	0.593	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	11609427	2R_11609427_SNP [dm3] 2R_15721922_SNP [dm6]	T	G	2.774e^-4	0.593	INTERGENIC
3R	6572510	3R_6572510_SNP [dm3] 3R_10746788_SNP [dm6]	C	T	2.782e^-4	0.594	INTRON TkR86C
3R	8569297	3R_8569297_SNP [dm3] 3R_12743575_SNP [dm6]	C	T	2.788e^-4	0.594	SYNONYMOUS_CODING CG5999
2R	5717486	2R_5717486_SNP [dm3] 2R_9829981_SNP [dm6]	G	A	2.792e^-4	0.594	INTRON hebe	TF binding site mE1_TFBS_cad
3R	8888316	3R_8888316_SNP [dm3] 3R_13062594_SNP [dm6]	A	G	2.793e^-4	0.594	UTR_5_PRIME sim INTRON sim
3R	8607922	3R_8607922_SNP [dm3] 3R_12782200_SNP [dm6]	G	A	2.793e^-4	0.594	INTRON beat-Vc
3L	18887336	3L_18887336_SNP [dm3] 3L_18894236_SNP [dm6]	A	C	2.794e^-4	0.594	DOWNSTREAM NijB INTRON CG3902
2L	556764	2L_556764_SNP [dm3] 2L_556764_SNP [dm6]	C	T	2.818e^-4	0.594	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11442926	2L_11442926_SNP [dm3] 2L_11442926_SNP [dm6]	C	G	2.819e^-4	0.594	INTRON salm
2R	1990437	2R_1990437_SNP [dm3] 2R_6102932_SNP [dm6]	G	A	2.823e^-4	0.594	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	7257941	X_7257941_SNP [dm3] X_7363908_SNP [dm6]	G	A	2.831e^-4	0.594	INTRON CG1677 & 1 other
X	14872107	X_14872107_INS [dm3] X_14978074_INS [dm6]	G	GAG	2.833e^-4	0.594	INTRON eag
X	5611607	X_5611607_SNP [dm3] X_5717574_SNP [dm6]	A	G	2.834e^-4	0.594	SYNONYMOUS_CODING CG33080	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14788313	2L_14788313_SNP [dm3] 2L_14788313_SNP [dm6]	A	T	2.836e^-4	0.594	INTERGENIC
2L	8268638	2L_8268638_SNP [dm3] 2L_8268638_SNP [dm6]	A	T	2.840e^-4	0.594	INTRON Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16715132	2L_16715132_SNP [dm3] 2L_16715132_SNP [dm6]	G	A	2.847e^-4	0.594	UPSTREAM Cyt-c-d INTRON CG31808
2R	9950245	2R_9950245_SNP [dm3] 2R_14062740_SNP [dm6]	G	A	2.849e^-4	0.594	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6895795	3L_6895795_SNP [dm3] 3L_6902695_SNP [dm6]	G	A	2.852e^-4	0.594	INTERGENIC
2R	10998554	2R_10998554_INS [dm3] 2R_15111049_INS [dm6]	A	ACCATAAGAACCACTAATGG...	2.854e^-4	0.594	INTERGENIC
2L	11695663	2L_11695663_SNP [dm3] 2L_11695663_SNP [dm6]	C	T	2.855e^-4	0.594	NON_SYNONYMOUS_CODING CG4988
2L	9663622	2L_9663622_SNP [dm3] 2L_9663622_SNP [dm6]	G	A	2.858e^-4	0.594	INTERGENIC
3L	6737757	3L_6737757_SNP [dm3] 3L_6744657_SNP [dm6]	G	A	2.864e^-4	0.594	SYNONYMOUS_CODING velo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	20920568	X_20920568_SNP [dm3] X_21049541_SNP [dm6]	A	C	2.873e^-4	0.594	DOWNSTREAM CG1518 & 1 other INTERGENIC
2L	263266	2L_263266_SNP [dm3] 2L_263266_SNP [dm6]	T	C	2.876e^-4	0.594	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 & 1 other INTRON CG3645
3L	18132167	3L_18132167_SNP [dm3] 3L_18139067_SNP [dm6]	C	G	2.877e^-4	0.594	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	20888285	X_20888285_SNP [dm3] X_21017258_SNP [dm6]	A	G	2.878e^-4	0.594	INTERGENIC
2R	2624625	2R_2624625_SNP [dm3] 2R_6737120_SNP [dm6]	C	T	2.879e^-4	0.594	INTRON l_2_01289
3R	6583251	3R_6583251_SNP [dm3] 3R_10757529_SNP [dm6]	A	G	2.884e^-4	0.594	NON_SYNONYMOUS_CODING CG31272 EXON CR45015
3R	18930613	3R_18930613_SNP [dm3] 3R_23104891_SNP [dm6]	T	C	2.885e^-4	0.594	INTRON CG13830
3R	8116880	3R_8116880_SNP [dm3] 3R_12291158_SNP [dm6]	G	C	2.885e^-4	0.594	INTRON svp	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	18005605	3R_18005605_SNP [dm3] 3R_22179883_SNP [dm6]	T	C	2.885e^-4	0.594	INTRON SKIP
2L	16229363	2L_16229363_SNP [dm3] 2L_16229363_SNP [dm6]	T	G	2.887e^-4	0.594	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5711955	2R_5711955_INS [dm3] 2R_9824450_INS [dm6]	A	AAATAATATAACATATAAAG...	2.889e^-4	0.594	INTRON dila	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4861896	X_4861896_SNP [dm3] X_4967863_SNP [dm6]	A	G	2.895e^-4	0.594	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5881859	2R_5881859_SNP [dm3] 2R_9994354_SNP [dm6]	A	T	2.896e^-4	0.594	UTR_3_PRIME Pka-R2 DOWNSTREAM TER94
X	14881902	X_14881902_SNP [dm3] X_14987869_SNP [dm6]	A	C	2.899e^-4	0.594	INTRON eag	TF binding site BDTNP1_TFBS_dl
3L	5629439	3L_5629439_SNP [dm3] 3L_5636339_SNP [dm6]	G	T	2.902e^-4	0.594	UTR_5_PRIME Blimp-1 INTRON Blimp-1
3L	7438454	3L_7438454_SNP [dm3] 3L_7445354_SNP [dm6]	A	G	2.904e^-4	0.594	UTR_5_PRIME CG42458
X	1251777	X_1251777_SNP [dm3] X_1357744_SNP [dm6]	T	G	2.905e^-4	0.594	UPSTREAM png INTERGENIC
3R	8544976	3R_8544976_SNP [dm3] 3R_12719254_SNP [dm6]	T	G	2.906e^-4	0.594	INTRON Men	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10032111	3L_10032111_SNP [dm3] 3L_10039011_SNP [dm6]	C	A	2.907e^-4	0.594	INTRON dpr6
2R	5860868	2R_5860868_SNP [dm3] 2R_9973363_SNP [dm6]	A	G	2.909e^-4	0.594	DOWNSTREAM CG12134 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8601468	3R_8601468_SNP [dm3] 3R_12775746_SNP [dm6]	T	G	2.909e^-4	0.594	INTRON beat-Vc
X	4437897	X_4437897_SNP [dm3] X_4543864_SNP [dm6]	C	G	2.932e^-4	0.597	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
3R	8585187	3R_8585187_SNP [dm3] 3R_12759465_SNP [dm6]	G	A	2.936e^-4	0.597	INTRON beat-Vc
3L	16979014	3L_16979014_SNP [dm3] 3L_16985914_SNP [dm6]	G	A	2.936e^-4	0.597	UPSTREAM Exn INTRON Exn	TF binding site mE1_TFBS_bab1 mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	12523847	3L_12523847_SNP [dm3] 3L_12530747_SNP [dm6]	C	T	2.939e^-4	0.597	UTR_3_PRIME Tsf2 UPSTREAM nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11468265	2L_11468265_SNP [dm3] 2L_11468265_SNP [dm6]	C	G	2.941e^-4	0.597	INTERGENIC
X	15560023	X_15560023_SNP [dm3] X_15665990_SNP [dm6]	C	G	2.943e^-4	0.597	UPSTREAM CR43299 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11612579	2R_11612579_SNP [dm3] 2R_15725074_SNP [dm6]	C	T	2.950e^-4	0.598	INTERGENIC
3R	8102682	3R_8102682_SNP [dm3] 3R_12276960_SNP [dm6]	G	A	2.968e^-4	0.6	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8102707	3R_8102707_SNP [dm3] 3R_12276985_SNP [dm6]	T	C	2.968e^-4	0.6	INTRON svp
2L	15560151	2L_15560151_SNP [dm3] 2L_15560151_SNP [dm6]	T	C	2.975e^-4	0.6	INTRON kek3
3L	16330567	3L_16330567_INS [dm3] 3L_16337467_INS [dm6]	A	ATTT	2.977e^-4	0.6	INTERGENIC
3L	11375437	3L_11375437_SNP [dm3] 3L_11382337_SNP [dm6]	T	A	2.981e^-4	0.6	DOWNSTREAM CR42755 INTERGENIC
3R	8103861	3R_8103861_SNP [dm3] 3R_12278139_SNP [dm6]	T	A	2.982e^-4	0.6	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	21045832	3R_21045832_SNP [dm3] 3R_25220110_SNP [dm6]	C	T	2.982e^-4	0.6	INTRON CG31103	TF binding site BDTNP1_TFBS_dl
3R	7133764	3R_7133764_SNP [dm3] 3R_11308042_SNP [dm6]	T	G	2.996e^-4	0.601	INTERGENIC
3R	7026951	3R_7026951_SNP [dm3] 3R_11201229_SNP [dm6]	C	A	2.996e^-4	0.601	INTRON cu
3L	12523846	3L_12523846_SNP [dm3] 3L_12530746_SNP [dm6]	G	A	2.998e^-4	0.601	UTR_3_PRIME Tsf2 UPSTREAM nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21354178	X_21354178_SNP [dm3] X_21483151_SNP [dm6]	A	G	3.004e^-4	0.601	EXON CR45511	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8864676	3R_8864676_SNP [dm3] 3R_13038954_SNP [dm6]	A	G	3.009e^-4	0.601	SYNONYMOUS_CODING CG11668 DOWNSTREAM ry
3L	19014518	3L_19014518_SNP [dm3] 3L_19021418_SNP [dm6]	T	G	3.010e^-4	0.601	INTRON nkd
2R	12790600	2R_12790600_INS [dm3] 2R_16903095_INS [dm6]	A	ACA	3.011e^-4	0.601	INTERGENIC
2L	263273	2L_263273_SNP [dm3] 2L_263273_SNP [dm6]	C	T	3.018e^-4	0.601	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 & 1 other INTRON CG3645
3L	20029293	3L_20029293_SNP [dm3] 3L_20036193_SNP [dm6]	A	G	3.022e^-4	0.601	INTERGENIC
2R	19244050	2R_19244050_SNP [dm3] 2R_23356527_SNP [dm6]	A	G	3.023e^-4	0.601	SYNONYMOUS_CODING CG3500 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	10761446	3L_10761446_SNP [dm3] 3L_10768346_SNP [dm6]	C	T	3.024e^-4	0.601	INTERGENIC
2R	8430301	2R_8430301_SNP [dm3] 2R_12542796_SNP [dm6]	G	A	3.029e^-4	0.601	INTRON fra
3R	8884490	3R_8884490_SNP [dm3] 3R_13058768_SNP [dm6]	T	C	3.039e^-4	0.602	INTRON sim	TF binding site mE1_TFBS_Kr
2R	20147771	2R_20147771_SNP [dm3] 2R_24260248_SNP [dm6]	T	G	3.047e^-4	0.602	INTRON CG3376	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8977040	3R_8977040_SNP [dm3] 3R_13151318_SNP [dm6]	C	G	3.049e^-4	0.602	INTRON timeout & 2 others
3R	8977108	3R_8977108_DEL [dm3] 3R_13151386_DEL [dm6]	TTT	T	3.049e^-4	0.602	INTRON timeout & 2 others
X	10895358	X_10895358_SNP [dm3] X_11001325_SNP [dm6]	G	A	3.051e^-4	0.602	INTRON CG42339
3R	8573164	3R_8573164_SNP [dm3] 3R_12747442_SNP [dm6]	A	T	3.053e^-4	0.602	SYNONYMOUS_CODING beat-Vc
3L	18836613	3L_18836613_SNP [dm3] 3L_18843513_SNP [dm6]	A	T	3.059e^-4	0.603	DOWNSTREAM CR32027 INTRON Indy
3R	9059786	3R_9059786_SNP [dm3] 3R_13234064_SNP [dm6]	G	C	3.070e^-4	0.604	INTRON Ace
3L	1002331	3L_1002331_SNP [dm3] 3L_1002331_SNP [dm6]	G	A	3.071e^-4	0.604	INTRON trio
2L	12460888	2L_12460888_SNP [dm3] 2L_12460888_SNP [dm6]	A	T	3.077e^-4	0.604	UTR_5_PRIME bun UPSTREAM mir-967 INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18148330	3R_18148330_SNP [dm3] 3R_22322608_SNP [dm6]	A	T	3.081e^-4	0.604	INTRON CG34377
X	8683022	X_8683022_SNP [dm3] X_8788989_SNP [dm6]	A	G	3.090e^-4	0.604	INTRON Lim1
3R	13919890	3R_13919890_DEL [dm3] 3R_18094168_DEL [dm6]	AGGA	A	3.092e^-4	0.604	INTRON sr
3R	6568492	3R_6568492_SNP [dm3] 3R_10742770_SNP [dm6]	C	T	3.094e^-4	0.604	INTRON TkR86C
3R	25440367	3R_25440367_DEL [dm3] 3R_29614645_DEL [dm6]	CG	C	3.094e^-4	0.604	INTRON alph
3L	16029350	3L_16029350_SNP [dm3] 3L_16036250_SNP [dm6]	G	T	3.094e^-4	0.604	SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_twi
X	4861911	X_4861911_SNP [dm3] X_4967878_SNP [dm6]	C	T	3.098e^-4	0.604	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5738232	2R_5738232_DEL [dm3] 2R_9850727_DEL [dm6]	ATA	A	3.104e^-4	0.604	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
X	14871871	X_14871871_SNP [dm3] X_14977838_SNP [dm6]	G	A	3.105e^-4	0.604	INTRON eag
2L	17692833	2L_17692833_SNP [dm3] 2L_17692833_SNP [dm6]	A	G	3.114e^-4	0.605	INTRON CadN
3R	8976984	3R_8976984_SNP [dm3] 3R_13151262_SNP [dm6]	T	A	3.119e^-4	0.605	INTRON timeout & 2 others
3L	19228952	3L_19228952_SNP [dm3] 3L_19235852_SNP [dm6]	T	A	3.125e^-4	0.605	UPSTREAM CG33647 & 1 other INTERGENIC
2R	15672988	2R_15672988_SNP [dm3] 2R_19785483_SNP [dm6]	C	T	3.127e^-4	0.605	EXON CR45231	regulatory region REDfly_CRMs
3R	7133766	3R_7133766_SNP [dm3] 3R_11308044_SNP [dm6]	C	A	3.127e^-4	0.605	INTERGENIC
2R	18466824	2R_18466824_SNP [dm3] 2R_22579319_SNP [dm6]	C	A	3.131e^-4	0.605	INTRON dnr1	TF binding site mE1_TFBS_chinmo
X	10853236	X_10853236_SNP [dm3] X_10959203_SNP [dm6]	A	T	3.137e^-4	0.605	INTRON Myo10A
3L	18387870	3L_18387870_SNP [dm3] 3L_18394770_SNP [dm6]	A	G	3.139e^-4	0.605	INTERGENIC
3R	10234852	3R_10234852_SNP [dm3] 3R_14409130_SNP [dm6]	C	A	3.141e^-4	0.605	SYNONYMOUS_CODING cv-c
X	6878744	X_6878744_SNP [dm3] X_6984711_SNP [dm6]	A	G	3.141e^-4	0.605	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9756259	2R_9756259_SNP [dm3] 2R_13868754_SNP [dm6]	A	T	3.147e^-4	0.605	INTRON shot
X	4861902	X_4861902_SNP [dm3] X_4967869_SNP [dm6]	T	G	3.150e^-4	0.605	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19340874	3R_19340874_SNP [dm3] 3R_23515152_SNP [dm6]	A	G	3.154e^-4	0.605	SYNONYMOUS_CODING Irk2	TF binding site mE1_TFBS_sens
2L	2787487	2L_2787487_SNP [dm3] 2L_2787487_SNP [dm6]	G	A	3.157e^-4	0.605	INTRON Syt1
X	6136089	X_6136089_SNP [dm3] X_6242056_SNP [dm6]	G	A	3.160e^-4	0.605	INTRON Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	5860812	2R_5860812_SNP [dm3] 2R_9973307_SNP [dm6]	C	A	3.169e^-4	0.605	DOWNSTREAM CG12134 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	4754555	3L_4754555_SNP [dm3] 3L_4754555_SNP [dm6]	T	C	3.173e^-4	0.605	UPSTREAM CG12493 INTRON RhoGEF64C
2L	12609453	2L_12609453_SNP [dm3] 2L_12609453_SNP [dm6]	G	C	3.176e^-4	0.605	INTRON nub	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	15217828	X_15217828_SNP [dm3] X_15323795_SNP [dm6]	G	C	3.176e^-4	0.605	INTRON Top1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19341304	3R_19341304_SNP [dm3] 3R_23515582_SNP [dm6]	T	G	3.178e^-4	0.605	INTRON Irk2
2L	11468222	2L_11468222_SNP [dm3] 2L_11468222_SNP [dm6]	G	C	3.184e^-4	0.605	INTERGENIC
3R	8442013	3R_8442013_SNP [dm3] 3R_12616291_SNP [dm6]	G	T	3.184e^-4	0.605	INTERGENIC
3R	8494403	3R_8494403_SNP [dm3] 3R_12668681_SNP [dm6]	G	T	3.186e^-4	0.605	UTR_5_PRIME CG14395
3R	8979318	3R_8979318_SNP [dm3] 3R_13153596_SNP [dm6]	G	C	3.190e^-4	0.605	INTRON timeout & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3522754	3L_3522754_DEL [dm3] 3L_3522754_DEL [dm6]	TCAGTTG	T	3.191e^-4	0.605	DOWNSTREAM CR45043 INTRON Eip63E
3R	25810994	3R_25810994_SNP [dm3] 3R_29985272_SNP [dm6]	C	A	3.200e^-4	0.606	INTRON CG7896	TF binding site mE1_TFBS_cad
3R	26404961	3R_26404961_SNP [dm3] 3R_30579239_SNP [dm6]	G	T	3.200e^-4	0.606	UPSTREAM CG9702 DOWNSTREAM tmod INTERGENIC
2L	11012271	2L_11012271_SNP [dm3] 2L_11012271_SNP [dm6]	T	G	3.206e^-4	0.606	DOWNSTREAM dUTPase & 1 other INTERGENIC
2R	12755822	2R_12755822_SNP [dm3] 2R_16868317_SNP [dm6]	A	T	3.215e^-4	0.606	SYNONYMOUS_CODING Ef1beta UPSTREAM Psi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	10853604	X_10853604_SNP [dm3] X_10959571_SNP [dm6]	G	A	3.216e^-4	0.606	INTRON Myo10A
2L	11182226	2L_11182226_SNP [dm3] 2L_11182226_SNP [dm6]	T	C	3.216e^-4	0.606	INTRON Ca-beta	TF binding site mE1_TFBS_cad
2R	2666195	2R_2666195_SNP [dm3] 2R_6778690_SNP [dm6]	G	A	3.229e^-4	0.608	INTRON Epac
2L	11447890	2L_11447890_SNP [dm3] 2L_11447890_SNP [dm6]	T	A	3.235e^-4	0.609	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5706278	3L_5706278_SNP [dm3] 3L_5713178_SNP [dm6]	C	G	3.250e^-4	0.61	UPSTREAM CG44521 INTRON sif
3L	1590899	3L_1590899_SNP [dm3] 3L_1590899_SNP [dm6]	T	A	3.255e^-4	0.61	INTRON CG13917
2R	10096549	2R_10096549_SNP [dm3] 2R_14209044_SNP [dm6]	A	T	3.261e^-4	0.61	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

Cuticul_8_12_C26_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results