DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.117e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1976 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10292364	3L_10292364_SNP [dm3] 3L_10299264_SNP [dm6]	G	A	4.505e^-7	0.234	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17355310	2R_17355310_SNP [dm3] 2R_21467805_SNP [dm6]	T	A	5.133e^-7	0.234	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355404	2R_17355404_INS [dm3] 2R_21467899_INS [dm6]	T	TTCCCAAAAAT...	9.165e^-7	0.234	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355328	2R_17355328_DEL [dm3] 2R_21467823_DEL [dm6]	TTAAGCAAGGTGTTTAAGAT...	T	1.370e^-6	0.234	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355379	2R_17355379_SNP [dm3] 2R_21467874_SNP [dm6]	T	C	1.370e^-6	0.234	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355385	2R_17355385_DEL [dm3] 2R_21467880_DEL [dm6]	AT	G	1.370e^-6	0.234	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355390	2R_17355390_SNP [dm3] 2R_21467885_SNP [dm6]	T	A	1.370e^-6	0.234	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355391	2R_17355391_SNP [dm3] 2R_21467886_SNP [dm6]	C	A	1.370e^-6	0.234	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355414	2R_17355414_DEL [dm3] 2R_21467909_DEL [dm6]	TTTCC	T	1.370e^-6	0.234	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355421	2R_17355421_SNP [dm3] 2R_21467916_SNP [dm6]	A	T	1.370e^-6	0.234	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355438	2R_17355438_MNP [dm3] 2R_21467933_MNP [dm6]	GCCG	ATGA	1.370e^-6	0.234	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12924149	2L_12924149_SNP [dm3] 2L_12924149_SNP [dm6]	A	G	1.750e^-6	0.274	INTRON ACXA	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	21277876	3R_21277876_INS [dm3] 3R_25452154_INS [dm6]	T	TT	1.997e^-6	0.288	INTRON Fur1
X	13221413	X_13221413_SNP [dm3] X_13327380_SNP [dm6]	T	C	3.043e^-6	0.408	SYNONYMOUS_CODING IP3K2
2R	7986830	2R_7986830_SNP [dm3] 2R_12099325_SNP [dm6]	A	G	3.845e^-6	0.481	INTRON jeb	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17355424	2R_17355424_SNP [dm3] 2R_21467919_SNP [dm6]	A	C	4.665e^-6	0.512	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11081503	2R_11081503_SNP [dm3] 2R_15193998_SNP [dm6]	G	A	4.944e^-6	0.512	UTR_3_PRIME CG43829 UPSTREAM Sfp51E
3R	27054989	3R_27054989_SNP [dm3] 3R_31229267_SNP [dm6]	A	G	5.057e^-6	0.512	UTR_3_PRIME CG12054 DOWNSTREAM CG12054	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
X	4954059	X_4954059_INS [dm3] X_5060026_INS [dm6]	G	GG	5.187e^-6	0.512	INTRON CR44833 & 1 other
3L	8314568	3L_8314568_SNP [dm3] 3L_8321468_SNP [dm6]	A	G	6.370e^-6	0.597	INTRON CG13670	TF binding site mE1_TFBS_cad
3L	3788482	3L_3788482_SNP [dm3] 3L_3788482_SNP [dm6]	C	T	7.559e^-6	0.675	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	18197536	3L_18197536_SNP [dm3] 3L_18204436_SNP [dm6]	T	C	7.979e^-6	0.68	DOWNSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3L	14327894	3L_14327894_SNP [dm3] 3L_14334794_SNP [dm6]	C	A	8.362e^-6	0.682	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7770687	3L_7770687_SNP [dm3] 3L_7777587_SNP [dm6]	A	G	9.054e^-6	0.708	UTR_3_PRIME CG32369 DOWNSTREAM CG32369	regulatory region REDfly_CRMs
3R	21277862	3R_21277862_SNP [dm3] 3R_25452140_SNP [dm6]	A	T	1.064e^-5	0.772	INTRON Fur1
3L	18215312	3L_18215312_INS [dm3] 3L_18222212_INS [dm6]	A	AGCG	1.069e^-5	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13864106	3L_13864106_SNP [dm3] 3L_13871006_SNP [dm6]	T	C	1.183e^-5	0.815	UTR_3_PRIME dysc
3L	15709435	3L_15709435_SNP [dm3] 3L_15716335_SNP [dm6]	A	T	1.217e^-5	0.815	UPSTREAM CG42571 INTERGENIC	TF binding site mE1_TFBS_cad
3R	5650568	3R_5650568_SNP [dm3] 3R_9824846_SNP [dm6]	G	T	1.443e^-5	0.842	EXON CR42858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6982730	2L_6982730_SNP [dm3] 2L_6982730_SNP [dm6]	G	A	1.576e^-5	0.842	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6443034	3R_6443034_SNP [dm3] 3R_10617312_SNP [dm6]	C	A	1.618e^-5	0.842	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10898108	3L_10898108_SNP [dm3] 3L_10905008_SNP [dm6]	A	T	1.624e^-5	0.842	INTERGENIC
2R	8856210	2R_8856210_SNP [dm3] 2R_12968705_SNP [dm6]	G	T	1.728e^-5	0.842	SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11089295	3R_11089295_SNP [dm3] 3R_15263573_SNP [dm6]	C	T	1.744e^-5	0.842	START_GAINED Set UTR_5_PRIME Set UPSTREAM eIF-2gamma & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	11580407	3R_11580407_SNP [dm3] 3R_15754685_SNP [dm6]	A	G	1.758e^-5	0.842	INTERGENIC
3R	19358058	3R_19358058_SNP [dm3] 3R_23532336_SNP [dm6]	G	T	1.772e^-5	0.842	DOWNSTREAM CG10170 INTERGENIC
3R	15124599	3R_15124599_SNP [dm3] 3R_19298877_SNP [dm6]	G	C	1.793e^-5	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12926674	2L_12926674_SNP [dm3] 2L_12926674_SNP [dm6]	C	G	1.839e^-5	0.842	SYNONYMOUS_CODING ACXE
3L	7829895	3L_7829895_SNP [dm3] 3L_7836795_SNP [dm6]	C	G	1.906e^-5	0.842	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	7829885	3L_7829885_SNP [dm3] 3L_7836785_SNP [dm6]	T	C	1.936e^-5	0.842	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	7829882	3L_7829882_SNP [dm3] 3L_7836782_SNP [dm6]	A	G	1.941e^-5	0.842	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	9487008	2L_9487008_SNP [dm3] 2L_9487008_SNP [dm6]	A	T	2.010e^-5	0.842	INTERGENIC
3L	8696408	3L_8696408_SNP [dm3] 3L_8703308_SNP [dm6]	C	T	2.094e^-5	0.842	INTERGENIC
3R	12933316	3R_12933316_SNP [dm3] 3R_17107594_SNP [dm6]	G	A	2.133e^-5	0.842	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2164370	2L_2164370_SNP [dm3] 2L_2164370_SNP [dm6]	G	A	2.166e^-5	0.842	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	9487002	2L_9487002_SNP [dm3] 2L_9487002_SNP [dm6]	A	T	2.303e^-5	0.842	INTERGENIC
3L	8314503	3L_8314503_SNP [dm3] 3L_8321403_SNP [dm6]	A	T	2.318e^-5	0.842	INTRON CG13670	TF binding site mE1_TFBS_cad
X	18570672	X_18570672_SNP [dm3] X_18676639_SNP [dm6]	G	A	2.322e^-5	0.842	EXON CR45710
2R	6997082	2R_6997082_SNP [dm3] 2R_11109577_SNP [dm6]	A	C	2.368e^-5	0.842	INTRON luna
3L	15013278	3L_15013278_SNP [dm3] 3L_15020178_SNP [dm6]	C	A	2.390e^-5	0.842	INTRON Sytbeta	TF binding site BDTNP1_TFBS_prd
3L	3532203	3L_3532203_DEL [dm3] 3L_3532203_DEL [dm6]	TATGGCACATT...	T	2.419e^-5	0.842	INTRON Eip63E
2R	6799140	2R_6799140_SNP [dm3] 2R_10911635_SNP [dm6]	G	A	2.482e^-5	0.842	INTERGENIC
3L	6910973	3L_6910973_SNP [dm3] 3L_6917873_SNP [dm6]	T	A	2.487e^-5	0.842	INTERGENIC
2R	12498356	2R_12498356_SNP [dm3] 2R_16610851_SNP [dm6]	A	G	2.600e^-5	0.842	INTRON CG5065
X	3202119	X_3202119_SNP [dm3] X_3308086_SNP [dm6]	T	G	2.725e^-5	0.842	INTRON dnc
3R	9053286	3R_9053286_SNP [dm3] 3R_13227564_SNP [dm6]	A	G	2.963e^-5	0.842	UTR_3_PRIME Ace DOWNSTREAM Ace INTRON Ace
2R	11081455	2R_11081455_SNP [dm3] 2R_15193950_SNP [dm6]	G	A	3.045e^-5	0.842	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3R	26929383	3R_26929383_INS [dm3] 3R_31103661_INS [dm6]	A	AATATATCTCTTCATTTTAA...	3.272e^-5	0.842	INTERGENIC
2L	9486665	2L_9486665_SNP [dm3] 2L_9486665_SNP [dm6]	T	A	3.294e^-5	0.842	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4997112	3R_4997112_SNP [dm3] 3R_9171390_SNP [dm6]	T	C	3.297e^-5	0.842	INTRON pum
X	5034832	X_5034832_SNP [dm3] X_5140799_SNP [dm6]	G	C	3.330e^-5	0.842	INTRON rg & 1 other	TF binding site mE1_TFBS_inv
2L	987154	2L_987154_SNP [dm3] 2L_987154_SNP [dm6]	G	C	3.386e^-5	0.842	DOWNSTREAM CR44801 INTERGENIC
3R	20865580	3R_20865580_SNP [dm3] 3R_25039858_SNP [dm6]	A	G	3.409e^-5	0.842	UPSTREAM CG6422 DOWNSTREAM 5PtaseI INTRON bai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	13140369	3R_13140369_SNP [dm3] 3R_17314647_SNP [dm6]	C	T	3.411e^-5	0.842	INTERGENIC
3L	10898166	3L_10898166_SNP [dm3] 3L_10905066_SNP [dm6]	C	A	3.455e^-5	0.842	INTERGENIC
3L	9002826	3L_9002826_SNP [dm3] 3L_9009726_SNP [dm6]	G	A	3.456e^-5	0.842	SYNONYMOUS_CODING CG5194	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18197487	3L_18197487_SNP [dm3] 3L_18204387_SNP [dm6]	G	A	3.498e^-5	0.842	DOWNSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17240671	3R_17240671_SNP [dm3] 3R_21414949_SNP [dm6]	T	A	3.524e^-5	0.842	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	1436339	2L_1436339_SNP [dm3] 2L_1436339_SNP [dm6]	G	A	3.613e^-5	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11867311	2L_11867311_SNP [dm3] 2L_11867311_SNP [dm6]	C	G	3.720e^-5	0.842	INTRON Pde1c
2L	15013268	2L_15013268_SNP [dm3] 2L_15013268_SNP [dm6]	A	C	3.744e^-5	0.842	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15013372	2L_15013372_SNP [dm3] 2L_15013372_SNP [dm6]	T	C	3.765e^-5	0.842	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4957319	2L_4957319_SNP [dm3] 2L_4957319_SNP [dm6]	C	G	3.869e^-5	0.842	SYNONYMOUS_CODING Marcal1
3R	12931793	3R_12931793_SNP [dm3] 3R_17106071_SNP [dm6]	A	T	3.885e^-5	0.842	INTRON cher
3R	4296538	3R_4296538_SNP [dm3] 3R_8470816_SNP [dm6]	A	T	3.939e^-5	0.842	INTRON CG45263
3R	11086019	3R_11086019_SNP [dm3] 3R_15260297_SNP [dm6]	G	A	3.960e^-5	0.842	SYNONYMOUS_CODING Su_var_3-9 INTRON eIF-2gamma
2L	6982388	2L_6982388_SNP [dm3] 2L_6982388_SNP [dm6]	C	T	4.016e^-5	0.842	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22294769	3R_22294769_SNP [dm3] 3R_26469047_SNP [dm6]	T	C	4.041e^-5	0.842	INTRON CG5455
2L	14244622	2L_14244622_SNP [dm3] 2L_14244622_SNP [dm6]	G	A	4.119e^-5	0.842	INTERGENIC
X	13127313	X_13127313_SNP [dm3] X_13233280_SNP [dm6]	G	A	4.223e^-5	0.842	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4998594	3R_4998594_INS [dm3] 3R_9172872_INS [dm6]	A	ACAAAA	4.238e^-5	0.842	INTRON pum	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	23059769	3R_23059769_SNP [dm3] 3R_27234047_SNP [dm6]	A	G	4.303e^-5	0.842	SYNONYMOUS_CODING CG31068 INTRON CG31064	TF binding site mE1_TFBS_HSA
3R	6418761	3R_6418761_SNP [dm3] 3R_10593039_SNP [dm6]	G	T	4.309e^-5	0.842	INTRON hth	TF binding site mE1_TFBS_cad
3R	22294793	3R_22294793_SNP [dm3] 3R_26469071_SNP [dm6]	A	G	4.315e^-5	0.842	INTRON CG5455
3R	20636558	3R_20636558_SNP [dm3] 3R_24810836_SNP [dm6]	C	A	4.324e^-5	0.842	INTRON CG5807
3R	13368067	3R_13368067_SNP [dm3] 3R_17542345_SNP [dm6]	A	G	4.409e^-5	0.842	INTRON SF1
3R	7229494	3R_7229494_SNP [dm3] 3R_11403772_SNP [dm6]	T	C	4.424e^-5	0.842	UTR_3_PRIME pros
3R	4294576	3R_4294576_SNP [dm3] 3R_8468854_SNP [dm6]	T	A	4.441e^-5	0.842	INTRON CG45263	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	15363241	2L_15363241_SNP [dm3] 2L_15363241_SNP [dm6]	C	G	4.589e^-5	0.842	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2266078	2L_2266078_SNP [dm3] 2L_2266078_SNP [dm6]	A	T	4.663e^-5	0.842	UPSTREAM CG34049 INTERGENIC
3R	11580337	3R_11580337_SNP [dm3] 3R_15754615_SNP [dm6]	C	G	4.698e^-5	0.842	INTERGENIC
2L	12619158	2L_12619158_SNP [dm3] 2L_12619158_SNP [dm6]	A	G	4.826e^-5	0.842	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	4954190	X_4954190_SNP [dm3] X_5060157_SNP [dm6]	T	A	4.958e^-5	0.842	INTRON CR44833 & 1 other
2R	14318503	2R_14318503_SNP [dm3] 2R_18430998_SNP [dm6]	T	C	5.014e^-5	0.842	UTR_3_PRIME CG30118 DOWNSTREAM CG12263 INTRON CG30118
3R	6286541	3R_6286541_SNP [dm3] 3R_10460819_SNP [dm6]	C	T	5.020e^-5	0.842	UPSTREAM CR44939 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5634260	2R_5634260_SNP [dm3] 2R_9746755_SNP [dm6]	T	C	5.093e^-5	0.842	UTR_5_PRIME sqa
2L	7167518	2L_7167518_DEL [dm3] 2L_7167518_DEL [dm6]	GG	G	5.146e^-5	0.842	INTERGENIC
X	19128335	X_19128335_SNP [dm3] X_19234302_SNP [dm6]	C	G	5.191e^-5	0.842	SYNONYMOUS_CODING CG7884	TF binding site mE1_TFBS_chinmo
3R	22909085	3R_22909085_SNP [dm3] 3R_27083363_SNP [dm6]	G	T	5.209e^-5	0.842	SYNONYMOUS_CODING Cpr97Ea DOWNSTREAM CG14257	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20961201	3R_20961201_DEL [dm3] 3R_25135479_DEL [dm6]	TCT	T	5.355e^-5	0.842	INTRON Bili
3R	11088937	3R_11088937_SNP [dm3] 3R_15263215_SNP [dm6]	T	C	5.407e^-5	0.842	UPSTREAM Set & 1 other INTRON Su_var_3-9 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	12933323	3R_12933323_SNP [dm3] 3R_17107601_SNP [dm6]	A	G	5.436e^-5	0.842	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6785098	X_6785098_SNP [dm3] X_6891065_SNP [dm6]	T	C	5.447e^-5	0.842	INTERGENIC
X	11392200	X_11392200_SNP [dm3] X_11498167_SNP [dm6]	T	G	5.458e^-5	0.842	INTRON Drak
2R	12498333	2R_12498333_SNP [dm3] 2R_16610828_SNP [dm6]	C	T	5.603e^-5	0.842	INTRON CG5065
2R	12498335	2R_12498335_SNP [dm3] 2R_16610830_SNP [dm6]	T	C	5.603e^-5	0.842	INTRON CG5065
3L	18198133	3L_18198133_SNP [dm3] 3L_18205033_SNP [dm6]	G	C	5.632e^-5	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9005432	3L_9005432_SNP [dm3] 3L_9012332_SNP [dm6]	C	A	5.645e^-5	0.842	DOWNSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10898165	3L_10898165_SNP [dm3] 3L_10905065_SNP [dm6]	C	T	5.724e^-5	0.842	INTERGENIC
2L	9671096	2L_9671096_SNP [dm3] 2L_9671096_SNP [dm6]	G	C	5.754e^-5	0.842	UPSTREAM CR44150 INTERGENIC
2R	16115831	2R_16115831_SNP [dm3] 2R_20228326_SNP [dm6]	G	A	5.800e^-5	0.842	INTERGENIC
3L	3830421	3L_3830421_SNP [dm3] 3L_3830421_SNP [dm6]	A	C	5.800e^-5	0.842	INTRON enc
2L	8275815	2L_8275815_SNP [dm3] 2L_8275815_SNP [dm6]	G	A	5.841e^-5	0.842	INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10040443	3L_10040443_SNP [dm3] 3L_10047343_SNP [dm6]	G	C	5.877e^-5	0.842	INTRON dpr6
3R	13055863	3R_13055863_SNP [dm3] 3R_17230141_SNP [dm6]	C	G	5.880e^-5	0.842	INTERGENIC
3L	10898159	3L_10898159_SNP [dm3] 3L_10905059_SNP [dm6]	T	G	5.890e^-5	0.842	INTERGENIC
3R	13391693	3R_13391693_SNP [dm3] 3R_17565971_SNP [dm6]	G	A	5.925e^-5	0.842	INTRON Hmx
2L	14244643	2L_14244643_SNP [dm3] 2L_14244643_SNP [dm6]	G	C	5.939e^-5	0.842	INTERGENIC
3R	18621700	3R_18621700_SNP [dm3] 3R_22795978_SNP [dm6]	T	C	5.965e^-5	0.842	INTERGENIC
X	8402895	X_8402895_DEL [dm3] X_8508862_DEL [dm6]	TGCG	T	5.989e^-5	0.842	UPSTREAM CG33181 INTRON CG33181
2L	16246938	2L_16246938_DEL [dm3] 2L_16246938_DEL [dm6]	TAGTT	T	6.007e^-5	0.842	UTR_3_PRIME PRL-1
X	13996631	X_13996631_SNP [dm3] X_14102598_SNP [dm6]	A	C	6.024e^-5	0.842	DOWNSTREAM tRNA:S4:12Ee INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8173981	3L_8173981_SNP [dm3] 3L_8180881_SNP [dm6]	C	T	6.029e^-5	0.842	UPSTREAM CG7979 & 1 other INTERGENIC
3L	3909821	3L_3909821_SNP [dm3] 3L_3909821_SNP [dm6]	A	G	6.076e^-5	0.842	UTR_5_PRIME mge UPSTREAM mge DOWNSTREAM Eip63F-1
3R	6922819	3R_6922819_SNP [dm3] 3R_11097097_SNP [dm6]	C	T	6.149e^-5	0.842	INTERGENIC
2L	9671012	2L_9671012_SNP [dm3] 2L_9671012_SNP [dm6]	G	A	6.169e^-5	0.842	EXON CR44150
3R	15124607	3R_15124607_SNP [dm3] 3R_19298885_SNP [dm6]	C	A	6.189e^-5	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11390787	2L_11390787_SNP [dm3] 2L_11390787_SNP [dm6]	T	C	6.220e^-5	0.842	INTRON CR43681 EXON CR43681	regulatory region REDfly_CRMs
3R	10838951	3R_10838951_SNP [dm3] 3R_15013229_SNP [dm6]	T	C	6.280e^-5	0.842	INTERGENIC
2L	12619135	2L_12619135_SNP [dm3] 2L_12619135_SNP [dm6]	T	C	6.322e^-5	0.842	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	16147769	2L_16147769_SNP [dm3] 2L_16147769_SNP [dm6]	A	T	6.334e^-5	0.842	INTERGENIC
3L	5932666	3L_5932666_INS [dm3] 3L_5939566_INS [dm6]	A	AATGAACA	6.353e^-5	0.842	INTRON CG33993
2L	2266083	2L_2266083_SNP [dm3] 2L_2266083_SNP [dm6]	A	G	6.374e^-5	0.842	UPSTREAM CG34049 INTERGENIC
3R	18622087	3R_18622087_SNP [dm3] 3R_22796365_SNP [dm6]	C	T	6.383e^-5	0.842	INTERGENIC
3R	9996739	3R_9996739_SNP [dm3] 3R_14171017_SNP [dm6]	G	A	6.439e^-5	0.842	UTR_3_PRIME Dop1R1
3R	18621668	3R_18621668_SNP [dm3] 3R_22795946_SNP [dm6]	C	T	6.504e^-5	0.842	INTERGENIC
3R	18621678	3R_18621678_SNP [dm3] 3R_22795956_SNP [dm6]	T	A	6.504e^-5	0.842	INTERGENIC
3L	3532194	3L_3532194_SNP [dm3] 3L_3532194_SNP [dm6]	A	G	6.562e^-5	0.842	INTRON Eip63E
3L	8696368	3L_8696368_SNP [dm3] 3L_8703268_SNP [dm6]	C	T	6.635e^-5	0.842	INTERGENIC
3L	13818196	3L_13818196_INS [dm3] 3L_13825096_INS [dm6]	A	ACTTTAAAGTTCTCAA...	6.638e^-5	0.842	INTERGENIC
3R	4999461	3R_4999461_SNP [dm3] 3R_9173739_SNP [dm6]	T	A	6.651e^-5	0.842	INTRON pum
2L	4004457	2L_4004457_SNP [dm3] 2L_4004457_SNP [dm6]	C	T	6.666e^-5	0.842	UTR_3_PRIME CG34176 UPSTREAM CG15422
3R	13647627	3R_13647627_SNP [dm3] 3R_17821905_SNP [dm6]	T	A	6.721e^-5	0.842	UTR_5_PRIME tinc INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	12157195	2L_12157195_SNP [dm3] 2L_12157195_SNP [dm6]	C	A	6.737e^-5	0.842	INTRON CG31760
2R	9217773	2R_9217773_SNP [dm3] 2R_13330268_SNP [dm6]	C	T	6.822e^-5	0.842	UPSTREAM mir-184 EXON CR44206	TF binding site mE1_TFBS_cad
3L	4163845	3L_4163845_SNP [dm3] 3L_4163845_SNP [dm6]	T	C	6.882e^-5	0.842	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21337061	3R_21337061_SNP [dm3] 3R_25511339_SNP [dm6]	A	T	6.886e^-5	0.842	INTERGENIC
3L	12372133	3L_12372133_SNP [dm3] 3L_12379033_SNP [dm6]	G	A	6.886e^-5	0.842	INTRON Ncc69
3R	3774604	3R_3774604_SNP [dm3] 3R_7948882_SNP [dm6]	G	A	6.887e^-5	0.842	INTRON dsx
X	13244546	X_13244546_SNP [dm3] X_13350513_SNP [dm6]	G	C	6.899e^-5	0.842	INTERGENIC
3R	11086034	3R_11086034_SNP [dm3] 3R_15260312_SNP [dm6]	A	G	6.952e^-5	0.842	SYNONYMOUS_CODING Su_var_3-9 INTRON eIF-2gamma
2L	14545567	2L_14545567_SNP [dm3] 2L_14545567_SNP [dm6]	G	A	6.955e^-5	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18877117	2L_18877117_SNP [dm3] 2L_18877117_SNP [dm6]	G	T	7.021e^-5	0.842	INTRON tup	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2R	4527908	2R_4527908_DEL [dm3] 2R_8640403_DEL [dm6]	CAAGGAGC	C	7.057e^-5	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv
3R	6438883	3R_6438883_SNP [dm3] 3R_10613161_SNP [dm6]	A	G	7.074e^-5	0.842	UTR_5_PRIME hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8408285	X_8408285_SNP [dm3] X_8514252_SNP [dm6]	G	T	7.085e^-5	0.842	INTRON CG33181
2L	2164375	2L_2164375_SNP [dm3] 2L_2164375_SNP [dm6]	C	T	7.089e^-5	0.842	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	15013402	2L_15013402_SNP [dm3] 2L_15013402_SNP [dm6]	A	T	7.128e^-5	0.842	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7378036	2L_7378036_SNP [dm3] 2L_7378036_SNP [dm6]	A	G	7.139e^-5	0.842	DOWNSTREAM Wnt10 INTRON ninaC
3L	14328086	3L_14328086_SNP [dm3] 3L_14334986_SNP [dm6]	A	G	7.233e^-5	0.848	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18906963	3L_18906963_SNP [dm3] 3L_18913863_SNP [dm6]	T	C	7.342e^-5	0.855	NON_SYNONYMOUS_CODING CG14077
3L	18889880	3L_18889880_SNP [dm3] 3L_18896780_SNP [dm6]	C	T	7.436e^-5	0.861	UPSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	6303062	3L_6303062_DEL [dm3] 3L_6309962_DEL [dm6]	AA	A	7.601e^-5	0.875	INTERGENIC
2R	4086427	2R_4086427_DEL [dm3] 2R_8198922_DEL [dm6]	TT	T	7.790e^-5	0.891	INTRON LRP1
2L	16578655	2L_16578655_SNP [dm3] 2L_16578655_SNP [dm6]	A	T	7.931e^-5	0.897	INTRON CG42389
3R	6307160	3R_6307160_SNP [dm3] 3R_10481438_SNP [dm6]	C	A	8.142e^-5	0.897	INTERGENIC
2L	15400253	2L_15400253_SNP [dm3] 2L_15400253_SNP [dm6]	G	A	8.207e^-5	0.897	UPSTREAM CR44860 EXON CR45374
3L	9594662	3L_9594662_SNP [dm3] 3L_9601562_SNP [dm6]	T	C	8.225e^-5	0.897	START_GAINED CG3306 UTR_5_PRIME CG3306 UPSTREAM CG3088
X	18216351	X_18216351_SNP [dm3] X_18322318_SNP [dm6]	C	A	8.245e^-5	0.897	DOWNSTREAM CG6123 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	4727426	2R_4727426_SNP [dm3] 2R_8839921_SNP [dm6]	T	A	8.246e^-5	0.897	INTRON sns
X	16724299	X_16724299_SNP [dm3] X_16830266_SNP [dm6]	T	C	8.266e^-5	0.897	INTRON CG13004
2R	12969127	2R_12969127_SNP [dm3] 2R_17081622_SNP [dm6]	T	C	8.357e^-5	0.897	UTR_5_PRIME CG30460
3L	10809303	3L_10809303_SNP [dm3] 3L_10816203_SNP [dm6]	T	C	8.375e^-5	0.897	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
2L	18877115	2L_18877115_SNP [dm3] 2L_18877115_SNP [dm6]	T	C	8.455e^-5	0.897	INTRON tup	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	15013374	2L_15013374_SNP [dm3] 2L_15013374_SNP [dm6]	T	C	8.489e^-5	0.897	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8335897	2R_8335897_SNP [dm3] 2R_12448392_SNP [dm6]	C	T	8.509e^-5	0.897	SYNONYMOUS_CODING Dyb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12013311	3L_12013311_SNP [dm3] 3L_12020211_SNP [dm6]	A	T	8.512e^-5	0.897	INTRON rols
X	9325449	X_9325449_SNP [dm3] X_9431416_SNP [dm6]	A	G	8.576e^-5	0.897	INTRON mgl
3R	14860552	3R_14860552_SNP [dm3] 3R_19034830_SNP [dm6]	C	T	8.655e^-5	0.897	INTRON CG6026
3R	11325593	3R_11325593_SNP [dm3] 3R_15499871_SNP [dm6]	T	G	8.672e^-5	0.897	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11322524	2L_11322524_SNP [dm3] 2L_11322524_SNP [dm6]	A	C	8.750e^-5	0.897	INTERGENIC
2L	2158923	2L_2158923_SNP [dm3] 2L_2158923_SNP [dm6]	A	G	8.790e^-5	0.897	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3950373	2L_3950373_SNP [dm3] 2L_3950373_SNP [dm6]	A	C	8.829e^-5	0.897	INTRON fred
X	16902696	X_16902696_INS [dm3] X_17008663_INS [dm6]	C	CTC	8.895e^-5	0.897	INTRON CG45002
X	1152768	X_1152768_SNP [dm3] X_1258735_SNP [dm6]	C	T	8.965e^-5	0.897	INTRON Atf3
2R	12040620	2R_12040620_SNP [dm3] 2R_16153115_SNP [dm6]	T	C	8.971e^-5	0.897	INTRON lbk
X	6655434	X_6655434_SNP [dm3] X_6761401_SNP [dm6]	A	G	8.977e^-5	0.897	NON_SYNONYMOUS_CODING CG14438
2R	19519283	2R_19519283_SNP [dm3] 2R_23631760_SNP [dm6]	C	A	9.056e^-5	0.897	UPSTREAM retn INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12969093	2R_12969093_DEL [dm3] 2R_17081588_DEL [dm6]	TT	T	9.090e^-5	0.897	UTR_5_PRIME CG30460
3R	20980890	3R_20980890_SNP [dm3] 3R_25155168_SNP [dm6]	T	G	9.104e^-5	0.897	INTERGENIC
2L	15344466	2L_15344466_SNP [dm3] 2L_15344466_SNP [dm6]	T	C	9.157e^-5	0.897	INTERGENIC
3L	13249593	3L_13249593_INS [dm3] 3L_13256493_INS [dm6]	C	CCTTC	9.227e^-5	0.897	INTRON caps
3L	13250150	3L_13250150_SNP [dm3] 3L_13257050_SNP [dm6]	C	G	9.279e^-5	0.897	INTRON caps
2L	1928454	2L_1928454_SNP [dm3] 2L_1928454_SNP [dm6]	C	T	9.282e^-5	0.897	UTR_5_PRIME CG7337 INTRON CG7337
3L	10757781	3L_10757781_SNP [dm3] 3L_10764681_SNP [dm6]	T	A	9.351e^-5	0.898	INTERGENIC
2L	2164379	2L_2164379_SNP [dm3] 2L_2164379_SNP [dm6]	A	C	9.386e^-5	0.898	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	4878256	3R_4878256_SNP [dm3] 3R_9052534_SNP [dm6]	C	G	9.457e^-5	0.9	UTR_5_PRIME Kdm2 UPSTREAM Kdm2 DOWNSTREAM Mst85C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	22909280	3R_22909280_SNP [dm3] 3R_27083558_SNP [dm6]	G	A	9.531e^-5	0.901	SYNONYMOUS_CODING Cpr97Ea DOWNSTREAM CG14257	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6440770	3R_6440770_SNP [dm3] 3R_10615048_SNP [dm6]	T	G	9.567e^-5	0.901	UPSTREAM hth INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18156059	X_18156059_SNP [dm3] X_18262026_SNP [dm6]	C	T	9.603e^-5	0.901	INTERGENIC
2R	6581771	2R_6581771_SNP [dm3] 2R_10694266_SNP [dm6]	A	G	9.664e^-5	0.901	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	4224105	2R_4224105_SNP [dm3] 2R_8336600_SNP [dm6]	T	C	9.729e^-5	0.901	INTRON pdm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10957103	3L_10957103_INS [dm3] 3L_10964003_INS [dm6]	A	ACTCGCAA	9.759e^-5	0.901	INTERGENIC
3R	4997527	3R_4997527_SNP [dm3] 3R_9171805_SNP [dm6]	A	G	9.854e^-5	0.901	INTRON pum
2R	19472206	2R_19472206_SNP [dm3] 2R_23584683_SNP [dm6]	A	T	9.863e^-5	0.901	INTRON apt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8371049	2R_8371049_SNP [dm3] 2R_12483544_SNP [dm6]	A	G	1.006e^-4	0.901	INTRON Dh44-R2
2R	4312495	2R_4312495_SNP [dm3] 2R_8424990_SNP [dm6]	A	T	1.017e^-4	0.901	INTRON CSN7	TF binding site mE1_TFBS_chinmo
3R	5662272	3R_5662272_SNP [dm3] 3R_9836550_SNP [dm6]	A	C	1.030e^-4	0.901	INTRON Teh1
3L	3784515	3L_3784515_SNP [dm3] 3L_3784515_SNP [dm6]	A	C	1.034e^-4	0.901	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11084220	3R_11084220_SNP [dm3] 3R_15258498_SNP [dm6]	C	T	1.044e^-4	0.901	DOWNSTREAM CG42404 INTRON eIF-2gamma
2R	5634151	2R_5634151_SNP [dm3] 2R_9746646_SNP [dm6]	A	T	1.045e^-4	0.901	UTR_5_PRIME sqa
2L	5509212	2L_5509212_DEL [dm3] 2L_5509212_DEL [dm6]	CGATATTATATCG...	C	1.047e^-4	0.901	INTERGENIC
2L	5509234	2L_5509234_SNP [dm3] 2L_5509234_SNP [dm6]	T	C	1.047e^-4	0.901	INTERGENIC
2L	5509240	2L_5509240_SNP [dm3] 2L_5509240_SNP [dm6]	A	G	1.047e^-4	0.901	INTERGENIC
2L	5509249	2L_5509249_SNP [dm3] 2L_5509249_SNP [dm6]	T	A	1.047e^-4	0.901	INTERGENIC
3L	17328529	3L_17328529_SNP [dm3] 3L_17335429_SNP [dm6]	A	G	1.047e^-4	0.901	DOWNSTREAM CR44563 & 1 other INTERGENIC
2R	17405209	2R_17405209_SNP [dm3] 2R_21517704_SNP [dm6]	C	T	1.050e^-4	0.901	SYNONYMOUS_CODING CG10494 DOWNSTREAM MESK2	TF binding site mE1_TFBS_HSA
2R	13638020	2R_13638020_SNP [dm3] 2R_17750515_SNP [dm6]	G	A	1.052e^-4	0.901	DOWNSTREAM CG10931 INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10898029	3L_10898029_SNP [dm3] 3L_10904929_SNP [dm6]	C	A	1.052e^-4	0.901	INTERGENIC
3R	26929398	3R_26929398_SNP [dm3] 3R_31103676_SNP [dm6]	G	T	1.064e^-4	0.902	INTERGENIC
2R	20208832	2R_20208832_SNP [dm3] 2R_24321309_SNP [dm6]	T	C	1.070e^-4	0.902	INTERGENIC
2L	3154711	2L_3154711_SNP [dm3] 2L_3154711_SNP [dm6]	C	T	1.075e^-4	0.902	INTRON Mad
3L	17106201	3L_17106201_SNP [dm3] 3L_17113101_SNP [dm6]	T	G	1.081e^-4	0.902	INTRON Rbp6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5566731	2L_5566731_SNP [dm3] 2L_5566731_SNP [dm6]	T	C	1.081e^-4	0.902	UPSTREAM CR44794 DOWNSTREAM snRNA:U4:25F INTERGENIC
2L	16247360	2L_16247360_SNP [dm3] 2L_16247360_SNP [dm6]	G	A	1.082e^-4	0.902	SYNONYMOUS_CODING PRL-1
3L	18889864	3L_18889864_SNP [dm3] 3L_18896764_SNP [dm6]	G	C	1.115e^-4	0.907	UPSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16905606	2R_16905606_SNP [dm3] 2R_21018101_SNP [dm6]	C	A	1.119e^-4	0.907	UPSTREAM RIC-3 & 1 other INTRON RIC-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
3R	15151190	3R_15151190_SNP [dm3] 3R_19325468_SNP [dm6]	G	C	1.129e^-4	0.907	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	18836613	3L_18836613_SNP [dm3] 3L_18843513_SNP [dm6]	A	T	1.130e^-4	0.907	DOWNSTREAM CR32027 INTRON Indy
2L	18934885	2L_18934885_SNP [dm3] 2L_18934885_SNP [dm6]	A	G	1.139e^-4	0.907	INTRON ssp3	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	10571829	3L_10571829_DEL [dm3] 3L_10578729_DEL [dm6]	GG	A	1.139e^-4	0.907	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15145940	2R_15145940_SNP [dm3] 2R_19258435_SNP [dm6]	G	T	1.142e^-4	0.907	DOWNSTREAM CR44432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	3162452	3R_3162452_SNP [dm3] 3R_7336730_SNP [dm6]	G	T	1.143e^-4	0.907	INTERGENIC
3L	8825113	3L_8825113_SNP [dm3] 3L_8832013_SNP [dm6]	A	T	1.145e^-4	0.907	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	18882553	3L_18882553_SNP [dm3] 3L_18889453_SNP [dm6]	T	C	1.145e^-4	0.907	INTRON CG3961
3R	18621800	3R_18621800_SNP [dm3] 3R_22796078_SNP [dm6]	T	C	1.154e^-4	0.907	INTERGENIC
2L	8287125	2L_8287125_DEL [dm3] 2L_8287125_DEL [dm6]	CC	C	1.156e^-4	0.907	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10892087	2R_10892087_SNP [dm3] 2R_15004582_SNP [dm6]	G	A	1.175e^-4	0.907	INTERGENIC
X	6817901	X_6817901_SNP [dm3] X_6923868_SNP [dm6]	G	T	1.178e^-4	0.907	INTRON CG14431
3R	14741082	3R_14741082_SNP [dm3] 3R_18915360_SNP [dm6]	A	G	1.181e^-4	0.907	START_GAINED Xrp1 UTR_5_PRIME Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	16905626	2R_16905626_SNP [dm3] 2R_21018121_SNP [dm6]	A	T	1.182e^-4	0.907	UPSTREAM RIC-3 & 1 other INTRON RIC-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
3L	9226677	3L_9226677_SNP [dm3] 3L_9233577_SNP [dm6]	G	T	1.194e^-4	0.907	INTERGENIC
3L	13250174	3L_13250174_SNP [dm3] 3L_13257074_SNP [dm6]	A	T	1.197e^-4	0.907	INTRON caps
2L	16245610	2L_16245610_SNP [dm3] 2L_16245610_SNP [dm6]	A	T	1.205e^-4	0.907	DOWNSTREAM PRL-1 & 1 other INTERGENIC
3R	8997218	3R_8997218_SNP [dm3] 3R_13171496_SNP [dm6]	C	G	1.214e^-4	0.907	INTERGENIC
2L	5567454	2L_5567454_SNP [dm3] 2L_5567454_SNP [dm6]	C	G	1.220e^-4	0.907	INTERGENIC
3R	4294698	3R_4294698_SNP [dm3] 3R_8468976_SNP [dm6]	T	C	1.233e^-4	0.907	INTRON CG45263	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14449740	2L_14449740_SNP [dm3] 2L_14449740_SNP [dm6]	T	A	1.243e^-4	0.907	UPSTREAM CR45726 DOWNSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	12399979	3L_12399979_SNP [dm3] 3L_12406879_SNP [dm6]	C	A	1.246e^-4	0.907	INTRON CG32103	TF binding site mE1_TFBS_cad
X	19301615	X_19301615_SNP [dm3] X_19407582_SNP [dm6]	A	C	1.248e^-4	0.907	INTRON kek5
3R	9152510	3R_9152510_SNP [dm3] 3R_13326788_SNP [dm6]	T	C	1.251e^-4	0.907	INTERGENIC
3L	18140632	3L_18140632_SNP [dm3] 3L_18147532_SNP [dm6]	T	C	1.255e^-4	0.907	INTERGENIC
3R	12483820	3R_12483820_SNP [dm3] 3R_16658098_SNP [dm6]	A	T	1.258e^-4	0.907	UTR_3_PRIME Ubx
3L	14054659	3L_14054659_INS [dm3] 3L_14061559_INS [dm6]	T	TT	1.272e^-4	0.907	INTRON CG32138
3R	4801592	3R_4801592_SNP [dm3] 3R_8975870_SNP [dm6]	C	A	1.274e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	13160945	3R_13160945_DEL [dm3] 3R_17335223_DEL [dm6]	TCTTTTCACAG...	T	1.284e^-4	0.907	INTRON beat-IIa
2L	16198436	2L_16198436_SNP [dm3] 2L_16198436_SNP [dm6]	T	C	1.285e^-4	0.907	INTERGENIC
2L	6982358	2L_6982358_SNP [dm3] 2L_6982358_SNP [dm6]	G	A	1.285e^-4	0.907	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22295002	3R_22295002_SNP [dm3] 3R_26469280_SNP [dm6]	G	A	1.292e^-4	0.907	DOWNSTREAM plum INTRON CG5455
3R	11086145	3R_11086145_SNP [dm3] 3R_15260423_SNP [dm6]	A	G	1.307e^-4	0.907	SYNONYMOUS_CODING Su_var_3-9 INTRON eIF-2gamma
2L	17618236	2L_17618236_SNP [dm3] 2L_17618236_SNP [dm6]	A	C	1.307e^-4	0.907	INTERGENIC
X	10078498	X_10078498_SNP [dm3] X_10184465_SNP [dm6]	A	G	1.307e^-4	0.907	INTRON CG43902 & 1 other
2L	15058527	2L_15058527_SNP [dm3] 2L_15058527_SNP [dm6]	A	C	1.314e^-4	0.907	SYNONYMOUS_CODING CG33679 UPSTREAM ck DOWNSTREAM TfIIS	TF binding site BDTNP1_TFBS_dl
2R	9974020	2R_9974020_DEL [dm3] 2R_14086515_DEL [dm6]	TA	C	1.323e^-4	0.907	INTRON Prosap
3R	18621749	3R_18621749_SNP [dm3] 3R_22796027_SNP [dm6]	C	G	1.327e^-4	0.907	INTERGENIC
3L	13657932	3L_13657932_SNP [dm3] 3L_13664832_SNP [dm6]	T	C	1.338e^-4	0.907	UTR_5_PRIME bru-3 INTRON bru-3
2R	7379626	2R_7379626_SNP [dm3] 2R_11492121_SNP [dm6]	G	A	1.342e^-4	0.907	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13129507	3L_13129507_SNP [dm3] 3L_13136407_SNP [dm6]	G	A	1.346e^-4	0.907	INTRON CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13127264	X_13127264_SNP [dm3] X_13233231_SNP [dm6]	G	A	1.356e^-4	0.907	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12499668	2R_12499668_SNP [dm3] 2R_16612163_SNP [dm6]	G	A	1.357e^-4	0.907	UTR_5_PRIME CG5065 INTRON CG5065	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	15013456	2L_15013456_SNP [dm3] 2L_15013456_SNP [dm6]	A	G	1.361e^-4	0.907	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17177551	3L_17177551_SNP [dm3] 3L_17184451_SNP [dm6]	T	A	1.364e^-4	0.907	INTRON Rbp6
3L	12068033	3L_12068033_SNP [dm3] 3L_12074933_SNP [dm6]	C	T	1.365e^-4	0.907	INTRON Sema-5c
3L	7829886	3L_7829886_SNP [dm3] 3L_7836786_SNP [dm6]	A	G	1.365e^-4	0.907	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
X	4954401	X_4954401_SNP [dm3] X_5060368_SNP [dm6]	G	T	1.374e^-4	0.907	INTRON CR44833 & 1 other
2R	16431954	2R_16431954_SNP [dm3] 2R_20544449_SNP [dm6]	C	G	1.375e^-4	0.907	INTERGENIC
3L	10741113	3L_10741113_SNP [dm3] 3L_10748013_SNP [dm6]	C	A	1.376e^-4	0.907	INTERGENIC
3L	7829832	3L_7829832_SNP [dm3] 3L_7836732_SNP [dm6]	G	T	1.394e^-4	0.907	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	18657149	2L_18657149_SNP [dm3] 2L_18657149_SNP [dm6]	C	T	1.396e^-4	0.907	INTRON MESR3
3R	6438905	3R_6438905_SNP [dm3] 3R_10613183_SNP [dm6]	C	G	1.405e^-4	0.907	UTR_5_PRIME hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14647243	3L_14647243_INS [dm3] 3L_14654143_INS [dm6]	A	AATATGATA	1.419e^-4	0.907	INTRON dlp
3L	18198092	3L_18198092_SNP [dm3] 3L_18204992_SNP [dm6]	C	A	1.423e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3525060	3L_3525060_SNP [dm3] 3L_3525060_SNP [dm6]	A	G	1.425e^-4	0.907	INTRON Eip63E
X	9184931	X_9184931_SNP [dm3] X_9290898_SNP [dm6]	C	T	1.430e^-4	0.907	INTRON lz	TF binding site mE1_TFBS_Kr
3R	6925749	3R_6925749_SNP [dm3] 3R_11100027_SNP [dm6]	A	C	1.440e^-4	0.907	INTERGENIC
2L	5509194	2L_5509194_SNP [dm3] 2L_5509194_SNP [dm6]	T	A	1.442e^-4	0.907	INTERGENIC
3R	15442783	3R_15442783_SNP [dm3] 3R_19617061_SNP [dm6]	A	T	1.445e^-4	0.907	INTRON CG6231
2L	18466129	2L_18466129_SNP [dm3] 2L_18466129_SNP [dm6]	T	G	1.456e^-4	0.907	INTRON let-7-C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16115875	2R_16115875_SNP [dm3] 2R_20228370_SNP [dm6]	C	G	1.459e^-4	0.907	INTERGENIC
3L	9545525	3L_9545525_SNP [dm3] 3L_9552425_SNP [dm6]	T	A	1.467e^-4	0.907	INTRON CG42673
3R	27143393	3R_27143393_SNP [dm3] 3R_31317671_SNP [dm6]	T	G	1.478e^-4	0.907	INTRON CG34347
3L	5314364	3L_5314364_SNP [dm3] 3L_5321264_SNP [dm6]	G	A	1.493e^-4	0.907	INTERGENIC
3L	1256122	3L_1256122_SNP [dm3] 3L_1256122_SNP [dm6]	C	T	1.495e^-4	0.907	UPSTREAM CG9134 DOWNSTREAM CG9130 & 1 other INTERGENIC
3L	14088531	3L_14088531_SNP [dm3] 3L_14095431_SNP [dm6]	G	A	1.495e^-4	0.907	SYNONYMOUS_CODING Fbp1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25051598	3R_25051598_SNP [dm3] 3R_29225876_SNP [dm6]	A	G	1.498e^-4	0.907	SYNONYMOUS_CODING Brd8 DOWNSTREAM CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7171766	3L_7171766_SNP [dm3] 3L_7178666_SNP [dm6]	C	A	1.499e^-4	0.907	INTRON Dscam2
3R	15442835	3R_15442835_SNP [dm3] 3R_19617113_SNP [dm6]	C	T	1.502e^-4	0.907	INTRON CG6231
2R	8937081	2R_8937081_SNP [dm3] 2R_13049576_SNP [dm6]	G	A	1.504e^-4	0.907	NON_SYNONYMOUS_CODING CG13324
X	16724268	X_16724268_SNP [dm3] X_16830235_SNP [dm6]	A	T	1.507e^-4	0.907	INTRON CG13004
3L	18197895	3L_18197895_SNP [dm3] 3L_18204795_SNP [dm6]	A	C	1.516e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16229384	X_16229384_SNP [dm3] X_16335351_SNP [dm6]	A	G	1.519e^-4	0.907	UPSTREAM Dsp1 INTRON Dsp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	5651214	3R_5651214_SNP [dm3] 3R_9825492_SNP [dm6]	T	A	1.520e^-4	0.907	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10898012	3L_10898012_SNP [dm3] 3L_10904912_SNP [dm6]	G	A	1.520e^-4	0.907	INTERGENIC
X	16724265	X_16724265_SNP [dm3] X_16830232_SNP [dm6]	A	T	1.529e^-4	0.907	INTRON CG13004
3L	13248941	3L_13248941_SNP [dm3] 3L_13255841_SNP [dm6]	T	G	1.534e^-4	0.907	INTRON caps
2R	17981620	2R_17981620_SNP [dm3] 2R_22094115_SNP [dm6]	G	A	1.538e^-4	0.907	NON_SYNONYMOUS_CODING CG11073 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3532162	3L_3532162_SNP [dm3] 3L_3532162_SNP [dm6]	A	G	1.541e^-4	0.907	INTRON Eip63E
2L	5541793	2L_5541793_SNP [dm3] 2L_5541793_SNP [dm6]	G	A	1.548e^-4	0.907	SYNONYMOUS_CODING Hel25E UPSTREAM Lam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	12931792	3R_12931792_SNP [dm3] 3R_17106070_SNP [dm6]	C	T	1.556e^-4	0.907	INTRON cher
2L	5567381	2L_5567381_SNP [dm3] 2L_5567381_SNP [dm6]	A	G	1.556e^-4	0.907	INTERGENIC
2R	20210110	2R_20210110_SNP [dm3] 2R_24322587_SNP [dm6]	A	G	1.559e^-4	0.907	INTERGENIC
2L	8732924	2L_8732924_INS [dm3] 2L_8732924_INS [dm6]	T	TCT	1.559e^-4	0.907	INTRON raw
2R	6995715	2R_6995715_SNP [dm3] 2R_11108210_SNP [dm6]	G	C	1.559e^-4	0.907	INTRON luna	TF binding site mE1_TFBS_Trl
3L	13220079	3L_13220079_SNP [dm3] 3L_13226979_SNP [dm6]	A	G	1.567e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	10575021	2L_10575021_SNP [dm3] 2L_10575021_SNP [dm6]	A	G	1.572e^-4	0.907	DOWNSTREAM w-cup INTRON Trim9
X	9325447	X_9325447_SNP [dm3] X_9431414_SNP [dm6]	C	G	1.575e^-4	0.907	INTRON mgl
3R	20838866	3R_20838866_SNP [dm3] 3R_25013144_SNP [dm6]	A	G	1.580e^-4	0.907	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19301541	X_19301541_SNP [dm3] X_19407508_SNP [dm6]	T	C	1.585e^-4	0.907	INTRON kek5
2L	8275515	2L_8275515_SNP [dm3] 2L_8275515_SNP [dm6]	T	G	1.592e^-4	0.907	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13704323	2L_13704323_SNP [dm3] 2L_13704323_SNP [dm6]	G	C	1.596e^-4	0.907	INTRON CG31814
2L	16450200	2L_16450200_SNP [dm3] 2L_16450200_SNP [dm6]	C	T	1.603e^-4	0.907	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
2L	8273355	2L_8273355_DEL [dm3] 2L_8273355_DEL [dm6]	TA	T	1.604e^-4	0.907	UTR_5_PRIME Btk29A INTRON Btk29A
2L	2914785	2L_2914785_SNP [dm3] 2L_2914785_SNP [dm6]	C	T	1.605e^-4	0.907	INTRON lilli
2L	9486696	2L_9486696_SNP [dm3] 2L_9486696_SNP [dm6]	A	G	1.607e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	14545578	2L_14545578_SNP [dm3] 2L_14545578_SNP [dm6]	T	G	1.607e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18220381	3L_18220381_SNP [dm3] 3L_18227281_SNP [dm6]	C	T	1.611e^-4	0.907	INTERGENIC
2L	20622105	2L_20622105_SNP [dm3] 2L_20622105_SNP [dm6]	T	C	1.614e^-4	0.907	INTRON CR44909
2L	2338272	2L_2338272_SNP [dm3] 2L_2338272_SNP [dm6]	C	T	1.616e^-4	0.907	INTRON CG9967 & 1 other
2L	2158860	2L_2158860_SNP [dm3] 2L_2158860_SNP [dm6]	G	C	1.617e^-4	0.907	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22003939	3R_22003939_SNP [dm3] 3R_26178217_SNP [dm6]	G	T	1.624e^-4	0.907	INTRON CG31323
2R	3347833	2R_3347833_SNP [dm3] 2R_7460328_SNP [dm6]	A	G	1.628e^-4	0.907	UTR_3_PRIME CG11141 DOWNSTREAM CG11141
2R	6997279	2R_6997279_SNP [dm3] 2R_11109774_SNP [dm6]	C	T	1.628e^-4	0.907	INTRON luna
X	14849195	X_14849195_SNP [dm3] X_14955162_SNP [dm6]	C	A	1.632e^-4	0.907	UPSTREAM eag & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	16420196	2R_16420196_SNP [dm3] 2R_20532691_SNP [dm6]	C	G	1.635e^-4	0.907	UPSTREAM CG30154 EXON CR44651
2L	1928231	2L_1928231_SNP [dm3] 2L_1928231_SNP [dm6]	A	G	1.637e^-4	0.907	UTR_5_PRIME CG7337 INTRON CG7337
3L	18886072	3L_18886072_SNP [dm3] 3L_18892972_SNP [dm6]	C	T	1.644e^-4	0.907	SYNONYMOUS_CODING NijB DOWNSTREAM CG3902	TF binding site mE1_TFBS_cad
2R	15145994	2R_15145994_SNP [dm3] 2R_19258489_SNP [dm6]	G	A	1.644e^-4	0.907	DOWNSTREAM CR44432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	2266061	2L_2266061_SNP [dm3] 2L_2266061_SNP [dm6]	G	A	1.645e^-4	0.907	UPSTREAM CG34049 INTERGENIC
2R	17355296	2R_17355296_SNP [dm3] 2R_21467791_SNP [dm6]	G	T	1.645e^-4	0.907	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9718789	3R_9718789_SNP [dm3] 3R_13893067_SNP [dm6]	T	G	1.647e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	13221530	X_13221530_SNP [dm3] X_13327497_SNP [dm6]	C	T	1.654e^-4	0.907	SYNONYMOUS_CODING IP3K2
2R	5635196	2R_5635196_INS [dm3] 2R_9747691_INS [dm6]	A	ATCTCGCCCAAAAGAGAAAG...	1.655e^-4	0.907	UTR_5_PRIME sqa
2L	7772344	2L_7772344_SNP [dm3] 2L_7772344_SNP [dm6]	G	C	1.677e^-4	0.907	INTRON CG7191	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	10898082	3L_10898082_SNP [dm3] 3L_10904982_SNP [dm6]	T	C	1.680e^-4	0.907	INTERGENIC
3R	11085791	3R_11085791_SNP [dm3] 3R_15260069_SNP [dm6]	A	C	1.683e^-4	0.907	UTR_3_PRIME Su_var_3-9 INTRON eIF-2gamma
3L	10040638	3L_10040638_SNP [dm3] 3L_10047538_SNP [dm6]	T	G	1.688e^-4	0.907	INTRON dpr6
3L	13694459	3L_13694459_SNP [dm3] 3L_13701359_SNP [dm6]	G	A	1.688e^-4	0.907	INTRON bru-3
3L	18128291	3L_18128291_SNP [dm3] 3L_18135191_SNP [dm6]	A	T	1.701e^-4	0.907	DOWNSTREAM CR44669 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	4090811	2L_4090811_SNP [dm3] 2L_4090811_SNP [dm6]	C	T	1.706e^-4	0.907	INTRON ed
3R	22294891	3R_22294891_SNP [dm3] 3R_26469169_SNP [dm6]	T	A	1.718e^-4	0.907	DOWNSTREAM plum INTRON CG5455
2L	4090890	2L_4090890_SNP [dm3] 2L_4090890_SNP [dm6]	A	G	1.722e^-4	0.907	INTRON ed
2L	8275457	2L_8275457_SNP [dm3] 2L_8275457_SNP [dm6]	G	A	1.724e^-4	0.907	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4224092	2R_4224092_SNP [dm3] 2R_8336587_SNP [dm6]	G	T	1.726e^-4	0.907	INTRON pdm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8126974	3L_8126974_SNP [dm3] 3L_8133874_SNP [dm6]	T	C	1.729e^-4	0.907	NON_SYNONYMOUS_CODING CG7504
X	16094420	X_16094420_SNP [dm3] X_16200387_SNP [dm6]	C	T	1.734e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16933126	2L_16933126_SNP [dm3] 2L_16933126_SNP [dm6]	A	T	1.735e^-4	0.907	INTERGENIC
2L	17423202	2L_17423202_SNP [dm3] 2L_17423202_SNP [dm6]	C	A	1.738e^-4	0.907	INTRON Dif
2R	20509888	2R_20509888_DEL [dm3] 2R_24622365_DEL [dm6]	ATTTCCGCAGTTACTTGGCG...	A	1.740e^-4	0.907	INTRON CG13594	TF binding site mE1_TFBS_chinmo
3L	14603658	3L_14603658_SNP [dm3] 3L_14610558_SNP [dm6]	C	T	1.756e^-4	0.907	INTERGENIC
3L	18197898	3L_18197898_SNP [dm3] 3L_18204798_SNP [dm6]	T	G	1.761e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16115800	2R_16115800_SNP [dm3] 2R_20228295_SNP [dm6]	C	T	1.761e^-4	0.907	INTERGENIC
3L	18836793	3L_18836793_SNP [dm3] 3L_18843693_SNP [dm6]	A	C	1.795e^-4	0.907	DOWNSTREAM CR32027 INTRON Indy
2R	5213972	2R_5213972_SNP [dm3] 2R_9326467_SNP [dm6]	G	T	1.797e^-4	0.907	INTRON CG13954 & 1 other
2R	5213973	2R_5213973_SNP [dm3] 2R_9326468_SNP [dm6]	G	A	1.797e^-4	0.907	INTRON CG13954 & 1 other
2R	5213977	2R_5213977_SNP [dm3] 2R_9326472_SNP [dm6]	A	G	1.797e^-4	0.907	INTRON CG13954 & 1 other
2R	15129389	2R_15129389_SNP [dm3] 2R_19241884_SNP [dm6]	G	C	1.807e^-4	0.907	INTRON cora	TF binding site mE1_TFBS_cad
2R	15129396	2R_15129396_SNP [dm3] 2R_19241891_SNP [dm6]	A	T	1.807e^-4	0.907	INTRON cora	TF binding site mE1_TFBS_cad
2R	9939274	2R_9939274_SNP [dm3] 2R_14051769_SNP [dm6]	T	G	1.809e^-4	0.907	INTRON mam
3R	11096068	3R_11096068_SNP [dm3] 3R_15270346_SNP [dm6]	G	C	1.814e^-4	0.907	UTR_3_PRIME Zip88E DOWNSTREAM Cp190
2L	12619282	2L_12619282_SNP [dm3] 2L_12619282_SNP [dm6]	T	G	1.821e^-4	0.907	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	9817740	2L_9817740_INS [dm3] 2L_9817740_INS [dm6]	A	ACTAA	1.824e^-4	0.907	INTRON nAChRalpha6
X	13720800	X_13720800_SNP [dm3] X_13826767_SNP [dm6]	G	A	1.831e^-4	0.907	DOWNSTREAM Nup93-1 INTRON jub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15037365	2L_15037365_SNP [dm3] 2L_15037365_SNP [dm6]	C	T	1.836e^-4	0.907	SYNONYMOUS_CODING yellow-c UTR_3_PRIME CIAPIN1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13129512	3L_13129512_SNP [dm3] 3L_13136412_SNP [dm6]	A	T	1.840e^-4	0.907	INTRON CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6177830	2L_6177830_SNP [dm3] 2L_6177830_SNP [dm6]	C	T	1.849e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20021183	2R_20021183_SNP [dm3] 2R_24133660_SNP [dm6]	T	A	1.860e^-4	0.907	UPSTREAM Zfrp8 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17618243	2L_17618243_SNP [dm3] 2L_17618243_SNP [dm6]	G	T	1.868e^-4	0.907	INTERGENIC
3R	17240708	3R_17240708_SNP [dm3] 3R_21414986_SNP [dm6]	C	T	1.869e^-4	0.907	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	11302147	2R_11302147_SNP [dm3] 2R_15414642_SNP [dm6]	A	T	1.877e^-4	0.907	INTRON CG43729
3R	9152518	3R_9152518_SNP [dm3] 3R_13326796_SNP [dm6]	G	T	1.884e^-4	0.907	INTERGENIC
3L	7830213	3L_7830213_SNP [dm3] 3L_7837113_SNP [dm6]	T	G	1.887e^-4	0.907	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	2860360	2R_2860360_SNP [dm3] 2R_6972855_SNP [dm6]	C	T	1.888e^-4	0.907	SYNONYMOUS_CODING Cyp6u1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4159923	3L_4159923_SNP [dm3] 3L_4159923_SNP [dm6]	A	G	1.894e^-4	0.907	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	14757808	2L_14757808_SNP [dm3] 2L_14757808_SNP [dm6]	T	A	1.897e^-4	0.907	INTERGENIC
X	22239891	X_22239891_DEL [dm3] X_22838055_DEL [dm6]	AAT	A	1.910e^-4	0.907	INTRON fog & 1 other	transposable element FlyBase
3R	13053997	3R_13053997_SNP [dm3] 3R_17228275_SNP [dm6]	C	A	1.910e^-4	0.907	INTERGENIC
X	22239887	X_22239887_SNP [dm3] X_22838051_SNP [dm6]	C	G	1.911e^-4	0.907	INTRON fog & 1 other	transposable element FlyBase
3L	3531082	3L_3531082_SNP [dm3] 3L_3531082_SNP [dm6]	C	T	1.914e^-4	0.907	INTRON Eip63E
X	6270951	X_6270951_SNP [dm3] X_6376918_SNP [dm6]	T	A	1.919e^-4	0.907	INTERGENIC
3L	13250147	3L_13250147_SNP [dm3] 3L_13257047_SNP [dm6]	G	A	1.925e^-4	0.907	INTRON caps
3L	13818632	3L_13818632_SNP [dm3] 3L_13825532_SNP [dm6]	G	A	1.933e^-4	0.907	INTERGENIC
2L	12928584	2L_12928584_SNP [dm3] 2L_12928584_SNP [dm6]	T	A	1.934e^-4	0.907	INTRON ACXE
3R	15150931	3R_15150931_SNP [dm3] 3R_19325209_SNP [dm6]	G	A	1.935e^-4	0.907	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10695012	3L_10695012_SNP [dm3] 3L_10701912_SNP [dm6]	G	T	1.936e^-4	0.907	INTERGENIC
2L	7368953	2L_7368953_SNP [dm3] 2L_7368953_SNP [dm6]	G	A	1.939e^-4	0.907	DOWNSTREAM CR44063 INTRON Wnt10
2L	1530819	2L_1530819_INS [dm3] 2L_1530819_INS [dm6]	T	TT	1.942e^-4	0.907	INTERGENIC
2L	13155786	2L_13155786_SNP [dm3] 2L_13155786_SNP [dm6]	T	C	1.946e^-4	0.907	INTERGENIC
2L	960245	2L_960245_SNP [dm3] 2L_960245_SNP [dm6]	T	C	1.953e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	4206379	2R_4206379_SNP [dm3] 2R_8318874_SNP [dm6]	A	G	1.954e^-4	0.907	INTERGENIC
3L	1363400	3L_1363400_DEL [dm3] 3L_1363400_DEL [dm6]	GGGTG	G	1.956e^-4	0.907	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl
2L	5567402	2L_5567402_SNP [dm3] 2L_5567402_SNP [dm6]	C	T	1.956e^-4	0.907	INTERGENIC
3R	12131824	3R_12131824_SNP [dm3] 3R_16306102_SNP [dm6]	C	T	1.960e^-4	0.907	START_GAINED Zip89B UTR_5_PRIME Zip89B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12931588	3R_12931588_SNP [dm3] 3R_17105866_SNP [dm6]	G	A	1.964e^-4	0.907	INTRON cher	TF binding site mE1_TFBS_cad
2R	20184413	2R_20184413_SNP [dm3] 2R_24296890_SNP [dm6]	G	T	1.969e^-4	0.907	NON_SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10571834	3L_10571834_SNP [dm3] 3L_10578734_SNP [dm6]	A	G	1.969e^-4	0.907	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18523202	3R_18523202_SNP [dm3] 3R_22697480_SNP [dm6]	T	C	1.974e^-4	0.907	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
3R	18523219	3R_18523219_SNP [dm3] 3R_22697497_SNP [dm6]	T	G	1.974e^-4	0.907	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
X	2544520	X_2544520_SNP [dm3] X_2650487_SNP [dm6]	T	A	1.976e^-4	0.907	INTRON sgg
3L	7995293	3L_7995293_SNP [dm3] 3L_8002193_SNP [dm6]	C	T	1.977e^-4	0.907	INTRON nmo
2L	11410255	2L_11410255_SNP [dm3] 2L_11410255_SNP [dm6]	A	T	1.993e^-4	0.91	INTERGENIC	regulatory region REDfly_CRMs
2L	17262573	2L_17262573_SNP [dm3] 2L_17262573_SNP [dm6]	A	T	1.994e^-4	0.91	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	7772349	2L_7772349_SNP [dm3] 2L_7772349_SNP [dm6]	T	A	1.998e^-4	0.91	INTRON CG7191	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	9867611	2L_9867611_SNP [dm3] 2L_9867611_SNP [dm6]	C	G	2.005e^-4	0.91	INTRON nAChRalpha6
3R	10838982	3R_10838982_DEL [dm3] 3R_15013260_DEL [dm6]	CC	C	2.015e^-4	0.911	INTERGENIC
3R	18523304	3R_18523304_SNP [dm3] 3R_22697582_SNP [dm6]	A	T	2.017e^-4	0.911	SPLICE_SITE_REGION cd UPSTREAM Cyp6d4 INTRON cd
2L	8347751	2L_8347751_SNP [dm3] 2L_8347751_SNP [dm6]	T	A	2.021e^-4	0.911	INTRON CG7778
3R	20961236	3R_20961236_SNP [dm3] 3R_25135514_SNP [dm6]	A	T	2.041e^-4	0.918	INTRON Bili
3L	10695016	3L_10695016_SNP [dm3] 3L_10701916_SNP [dm6]	G	A	2.055e^-4	0.921	INTERGENIC
2R	13894488	2R_13894488_INS [dm3] 2R_18006983_INS [dm6]	T	TGT	2.057e^-4	0.921	DOWNSTREAM CR44419 INTRON dpr13
X	4448543	X_4448543_SNP [dm3] X_4554510_SNP [dm6]	C	A	2.063e^-4	0.921	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12934850	3R_12934850_SNP [dm3] 3R_17109128_SNP [dm6]	A	G	2.071e^-4	0.922	INTRON cher
X	2596962	X_2596962_SNP [dm3] X_2702929_SNP [dm6]	T	A	2.078e^-4	0.922	INTRON Csat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26600651	3R_26600651_SNP [dm3] 3R_30774929_SNP [dm6]	A	G	2.079e^-4	0.922	INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4883907	2L_4883907_SNP [dm3] 2L_4883907_SNP [dm6]	A	G	2.106e^-4	0.924	SYNONYMOUS_CODING CG3008 UPSTREAM Cf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	18889911	3L_18889911_DEL [dm3] 3L_18896811_DEL [dm6]	GTAAATTATTATTATTATCA...	G	2.126e^-4	0.924	UPSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	125746	2R_125746_SNP [dm3] 2R_4238241_SNP [dm6]	C	G	2.128e^-4	0.924	INTRON IntS3
X	2223334	X_2223334_SNP [dm3] X_2329301_SNP [dm6]	T	A	2.141e^-4	0.924	UPSTREAM CR33218 DOWNSTREAM CG2854 INTRON phl
2L	8276533	2L_8276533_SNP [dm3] 2L_8276533_SNP [dm6]	T	A	2.146e^-4	0.924	INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	5633376	2R_5633376_SNP [dm3] 2R_9745871_SNP [dm6]	A	T	2.154e^-4	0.924	UTR_5_PRIME sqa UPSTREAM sqa
X	13244547	X_13244547_SNP [dm3] X_13350514_SNP [dm6]	G	T	2.174e^-4	0.924	INTERGENIC
2R	19254055	2R_19254055_SNP [dm3] 2R_23366532_SNP [dm6]	G	A	2.183e^-4	0.924	UPSTREAM Ice1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17486571	3R_17486571_SNP [dm3] 3R_21660849_SNP [dm6]	G	T	2.200e^-4	0.924	UTR_5_PRIME E2f UPSTREAM E2f DOWNSTREAM CG6353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17486755	3R_17486755_SNP [dm3] 3R_21661033_SNP [dm6]	T	C	2.207e^-4	0.924	UPSTREAM E2f DOWNSTREAM CG6353 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4759502	3R_4759502_SNP [dm3] 3R_8933780_SNP [dm6]	G	A	2.216e^-4	0.924	DOWNSTREAM CR44020 INTERGENIC
2R	6446705	2R_6446705_INS [dm3] 2R_10559200_INS [dm6]	A	AACA	2.221e^-4	0.924	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	18929264	2L_18929264_SNP [dm3] 2L_18929264_SNP [dm6]	G	A	2.224e^-4	0.924	INTRON ssp3
2R	13894525	2R_13894525_SNP [dm3] 2R_18007020_SNP [dm6]	T	C	2.232e^-4	0.924	INTRON dpr13
3L	3784166	3L_3784166_DEL [dm3] 3L_3784166_DEL [dm6]	GTCAGCAG	G	2.237e^-4	0.924	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25071074	3R_25071074_SNP [dm3] 3R_29245352_SNP [dm6]	G	A	2.237e^-4	0.924	UPSTREAM CG31445 INTRON SP1029	TF binding site mE1_TFBS_cad
3L	10378611	3L_10378611_SNP [dm3] 3L_10385511_SNP [dm6]	T	A	2.253e^-4	0.924	UPSTREAM CR45245 INTERGENIC
3L	7830162	3L_7830162_SNP [dm3] 3L_7837062_SNP [dm6]	C	T	2.256e^-4	0.924	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17355297	2R_17355297_SNP [dm3] 2R_21467792_SNP [dm6]	G	T	2.260e^-4	0.924	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7084310	2R_7084310_SNP [dm3] 2R_11196805_SNP [dm6]	T	G	2.264e^-4	0.924	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	13179218	2R_13179218_SNP [dm3] 2R_17291713_SNP [dm6]	C	A	2.280e^-4	0.924	INTRON mbl
2L	10454537	2L_10454537_SNP [dm3] 2L_10454537_SNP [dm6]	A	T	2.288e^-4	0.924	SYNONYMOUS_CODING CG5322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8860421	3L_8860421_SNP [dm3] 3L_8867321_SNP [dm6]	G	A	2.294e^-4	0.924	INTRON dally
2L	2158806	2L_2158806_SNP [dm3] 2L_2158806_SNP [dm6]	C	T	2.296e^-4	0.924	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19792668	2R_19792668_INS [dm3] 2R_23905145_INS [dm6]	T	TC	2.296e^-4	0.924	UTR_3_PRIME CG13562 DOWNSTREAM Nap1
2L	15028261	2L_15028261_SNP [dm3] 2L_15028261_SNP [dm6]	A	C	2.299e^-4	0.924	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11081354	2R_11081354_SNP [dm3] 2R_15193849_SNP [dm6]	T	C	2.302e^-4	0.924	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3L	13342868	3L_13342868_SNP [dm3] 3L_13349768_SNP [dm6]	T	A	2.325e^-4	0.924	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18456379	X_18456379_SNP [dm3] X_18562346_SNP [dm6]	C	T	2.326e^-4	0.924	INTRON Bx
3R	13160930	3R_13160930_DEL [dm3] 3R_17335208_DEL [dm6]	GGACGCTTTTCACG...	G	2.330e^-4	0.924	INTRON beat-IIa
3L	18220392	3L_18220392_SNP [dm3] 3L_18227292_SNP [dm6]	C	T	2.341e^-4	0.924	INTERGENIC
2R	9939282	2R_9939282_SNP [dm3] 2R_14051777_SNP [dm6]	C	A	2.350e^-4	0.924	INTRON mam
3L	10019827	3L_10019827_SNP [dm3] 3L_10026727_SNP [dm6]	T	C	2.359e^-4	0.924	INTRON dpr6
3L	7088459	3L_7088459_SNP [dm3] 3L_7095359_SNP [dm6]	C	A	2.368e^-4	0.924	UTR_5_PRIME form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18126968	3L_18126968_SNP [dm3] 3L_18133868_SNP [dm6]	G	A	2.384e^-4	0.924	INTERGENIC
X	18165680	X_18165680_SNP [dm3] X_18271647_SNP [dm6]	C	T	2.386e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9523155	3L_9523155_SNP [dm3] 3L_9530055_SNP [dm6]	A	G	2.389e^-4	0.924	SYNONYMOUS_CODING Or67a
3L	18882775	3L_18882775_SNP [dm3] 3L_18889675_SNP [dm6]	A	C	2.391e^-4	0.924	INTRON CG3961	TF binding site BDTNP1_TFBS_dl
X	11678074	X_11678074_SNP [dm3] X_11784041_SNP [dm6]	C	T	2.394e^-4	0.924	INTERGENIC
2R	6686833	2R_6686833_INS [dm3] 2R_10799328_INS [dm6]	A	ATA	2.396e^-4	0.924	UPSTREAM CG33144 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15163222	3R_15163222_INS [dm3] 3R_19337500_INS [dm6]	A	AA	2.409e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10805235	2L_10805235_SNP [dm3] 2L_10805235_SNP [dm6]	A	C	2.410e^-4	0.924	INTRON Nos
3R	5001006	3R_5001006_DEL [dm3] 3R_9175284_DEL [dm6]	ATAGAAAATCT...	A	2.412e^-4	0.924	INTRON pum
3R	10635704	3R_10635704_SNP [dm3] 3R_14809982_SNP [dm6]	C	G	2.438e^-4	0.924	SYNONYMOUS_CODING btsz INTRON btsz	TF binding site mE1_TFBS_cad
3L	18881979	3L_18881979_SNP [dm3] 3L_18888879_SNP [dm6]	A	T	2.462e^-4	0.924	INTRON CG3961
X	6496484	X_6496484_SNP [dm3] X_6602451_SNP [dm6]	C	A	2.467e^-4	0.924	UTR_5_PRIME pigs INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	18198084	3L_18198084_SNP [dm3] 3L_18204984_SNP [dm6]	C	A	2.478e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	18111469	3L_18111469_SNP [dm3] 3L_18118369_SNP [dm6]	C	T	2.481e^-4	0.924	UTR_3_PRIME CG32195 INTRON CG7341
2L	16449939	2L_16449939_SNP [dm3] 2L_16449939_SNP [dm6]	T	C	2.483e^-4	0.924	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
3L	10300223	3L_10300223_SNP [dm3] 3L_10307123_SNP [dm6]	C	T	2.484e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	12931616	3R_12931616_SNP [dm3] 3R_17105894_SNP [dm6]	G	A	2.510e^-4	0.924	INTRON cher	TF binding site mE1_TFBS_cad
3L	12717022	3L_12717022_SNP [dm3] 3L_12723922_SNP [dm6]	A	C	2.512e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4883889	2L_4883889_SNP [dm3] 2L_4883889_SNP [dm6]	C	T	2.516e^-4	0.924	SYNONYMOUS_CODING CG3008 UPSTREAM Cf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	2588829	2L_2588829_SNP [dm3] 2L_2588829_SNP [dm6]	T	G	2.520e^-4	0.924	INTERGENIC
3R	8163215	3R_8163215_SNP [dm3] 3R_12337493_SNP [dm6]	G	A	2.521e^-4	0.924	INTRON CR44941
2L	760097	2L_760097_SNP [dm3] 2L_760097_SNP [dm6]	T	C	2.521e^-4	0.924	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo
3L	18196944	3L_18196944_SNP [dm3] 3L_18203844_SNP [dm6]	T	C	2.523e^-4	0.924	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	14603648	3L_14603648_SNP [dm3] 3L_14610548_SNP [dm6]	A	G	2.531e^-4	0.924	INTERGENIC
X	5030697	X_5030697_SNP [dm3] X_5136664_SNP [dm6]	G	A	2.533e^-4	0.924	INTRON rg & 1 other
2L	15093259	2L_15093259_SNP [dm3] 2L_15093259_SNP [dm6]	C	A	2.534e^-4	0.924	INTRON CG15270
2L	4865441	2L_4865441_SNP [dm3] 2L_4865441_SNP [dm6]	C	A	2.542e^-4	0.924	NON_SYNONYMOUS_CODING pog	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9486356	2L_9486356_SNP [dm3] 2L_9486356_SNP [dm6]	C	T	2.549e^-4	0.924	INTERGENIC
3L	2418271	3L_2418271_INS [dm3] 3L_2418271_INS [dm6]	A	AA	2.551e^-4	0.924	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15585860	X_15585860_DEL [dm3] X_15691827_DEL [dm6]	AAA	A	2.567e^-4	0.924	UPSTREAM CR45523 DOWNSTREAM CG43132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	14603655	3L_14603655_SNP [dm3] 3L_14610555_SNP [dm6]	T	G	2.568e^-4	0.924	INTERGENIC
3L	9642400	3L_9642400_SNP [dm3] 3L_9649300_SNP [dm6]	C	T	2.572e^-4	0.924	INTRON fry & 1 other
3R	20865622	3R_20865622_SNP [dm3] 3R_25039900_SNP [dm6]	A	G	2.576e^-4	0.924	NON_SYNONYMOUS_CODING bai UPSTREAM CG6422 DOWNSTREAM 5PtaseI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	4160872	3L_4160872_SNP [dm3] 3L_4160872_SNP [dm6]	G	A	2.577e^-4	0.924	UTR_5_PRIME nab DOWNSTREAM mas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	11098768	3R_11098768_SNP [dm3] 3R_15273046_SNP [dm6]	G	T	2.578e^-4	0.924	INTRON Cp190
2L	17614699	2L_17614699_DEL [dm3] 2L_17614699_DEL [dm6]	TTCGAATGTTTTGCCTTTTT...	T	2.580e^-4	0.924	INTERGENIC
3L	9547032	3L_9547032_SNP [dm3] 3L_9553932_SNP [dm6]	A	G	2.583e^-4	0.924	INTRON CG42673
2L	1296871	2L_1296871_DEL [dm3] 2L_1296871_DEL [dm6]	GAC	G	2.587e^-4	0.924	DOWNSTREAM robo3 INTERGENIC
2R	8775390	2R_8775390_SNP [dm3] 2R_12887885_SNP [dm6]	T	C	2.592e^-4	0.924	INTRON vg
2R	16654523	2R_16654523_SNP [dm3] 2R_20767018_SNP [dm6]	C	A	2.609e^-4	0.924	DOWNSTREAM CR44665 EXON CR44665
3R	25071072	3R_25071072_SNP [dm3] 3R_29245350_SNP [dm6]	G	A	2.609e^-4	0.924	UPSTREAM CG31445 INTRON SP1029	TF binding site mE1_TFBS_cad
3L	13250316	3L_13250316_SNP [dm3] 3L_13257216_SNP [dm6]	G	A	2.614e^-4	0.924	INTRON caps
X	8094272	X_8094272_DEL [dm3] X_8200239_DEL [dm6]	ATATATGTACATA...	A	2.614e^-4	0.924	INTRON sdt
3R	25597630	3R_25597630_SNP [dm3] 3R_29771908_SNP [dm6]	T	C	2.621e^-4	0.924	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14861836	2L_14861836_SNP [dm3] 2L_14861836_SNP [dm6]	G	A	2.622e^-4	0.924	INTERGENIC
3R	14741094	3R_14741094_SNP [dm3] 3R_18915372_SNP [dm6]	T	A	2.623e^-4	0.924	UTR_5_PRIME Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	3193248	2L_3193248_INS [dm3] 2L_3193248_INS [dm6]	T	TT	2.624e^-4	0.924	INTRON CG34393
2L	14545406	2L_14545406_SNP [dm3] 2L_14545406_SNP [dm6]	A	T	2.627e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18523309	3R_18523309_SNP [dm3] 3R_22697587_SNP [dm6]	T	A	2.629e^-4	0.924	UPSTREAM Cyp6d4 INTRON cd
X	3289537	X_3289537_SNP [dm3] X_3395504_SNP [dm6]	T	C	2.637e^-4	0.924	INTRON CR44999 & 1 other
2R	18464700	2R_18464700_SNP [dm3] 2R_22577195_SNP [dm6]	C	T	2.638e^-4	0.924	INTRON dnr1
2R	13789677	2R_13789677_SNP [dm3] 2R_17902172_SNP [dm6]	G	A	2.641e^-4	0.924	INTRON Elk
3L	7829860	3L_7829860_SNP [dm3] 3L_7836760_SNP [dm6]	A	G	2.651e^-4	0.924	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3R	15151196	3R_15151196_SNP [dm3] 3R_19325474_SNP [dm6]	A	T	2.660e^-4	0.924	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	13250153	3L_13250153_MNP [dm3] 3L_13257053_MNP [dm6]	GGT	ATG	2.663e^-4	0.924	INTRON caps
3L	13250157	3L_13250157_INS [dm3] 3L_13257057_INS [dm6]	A	AG	2.663e^-4	0.924	INTRON caps
3L	8035182	3L_8035182_SNP [dm3] 3L_8042082_SNP [dm6]	A	G	2.673e^-4	0.924	INTRON nmo
2L	1853161	2L_1853161_SNP [dm3] 2L_1853161_SNP [dm6]	G	A	2.678e^-4	0.924	INTRON wry
2R	20589914	2R_20589914_SNP [dm3] 2R_24702391_SNP [dm6]	A	T	2.678e^-4	0.924	INTRON Mid1
2R	16905674	2R_16905674_SNP [dm3] 2R_21018169_SNP [dm6]	G	A	2.685e^-4	0.924	UTR_5_PRIME RIC-3 UPSTREAM CG3295 & 1 other INTRON RIC-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
2L	4090916	2L_4090916_SNP [dm3] 2L_4090916_SNP [dm6]	C	T	2.697e^-4	0.924	INTRON ed
3L	14603651	3L_14603651_SNP [dm3] 3L_14610551_SNP [dm6]	T	C	2.702e^-4	0.924	INTERGENIC
3L	10300176	3L_10300176_SNP [dm3] 3L_10307076_SNP [dm6]	G	C	2.704e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19223386	3R_19223386_SNP [dm3] 3R_23397664_SNP [dm6]	T	G	2.709e^-4	0.924	INTERGENIC
2L	617998	2L_617998_SNP [dm3] 2L_617998_SNP [dm6]	C	T	2.714e^-4	0.924	INTERGENIC
3L	15691238	3L_15691238_SNP [dm3] 3L_15698138_SNP [dm6]	C	G	2.722e^-4	0.924	SYNONYMOUS_CODING comm2
2R	13769684	2R_13769684_SNP [dm3] 2R_17882179_SNP [dm6]	A	G	2.728e^-4	0.924	UTR_5_PRIME CG30110 INTRON Elk
X	9009786	X_9009786_SNP [dm3] X_9115753_SNP [dm6]	C	T	2.731e^-4	0.924	INTRON AP-1gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14545086	2L_14545086_SNP [dm3] 2L_14545086_SNP [dm6]	A	T	2.734e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14741100	3R_14741100_SNP [dm3] 3R_18915378_SNP [dm6]	A	T	2.740e^-4	0.924	UTR_5_PRIME Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	5645852	3R_5645852_SNP [dm3] 3R_9820130_SNP [dm6]	C	T	2.744e^-4	0.924	UPSTREAM CG9458 DOWNSTREAM CG42857 INTERGENIC
2R	13791296	2R_13791296_SNP [dm3] 2R_17903791_SNP [dm6]	C	A	2.755e^-4	0.924	INTRON Elk
3L	9547596	3L_9547596_SNP [dm3] 3L_9554496_SNP [dm6]	C	T	2.760e^-4	0.924	INTRON CG42673
3L	8312930	3L_8312930_SNP [dm3] 3L_8319830_SNP [dm6]	C	T	2.769e^-4	0.924	UPSTREAM CG43059 & 1 other INTERGENIC
3L	10378565	3L_10378565_SNP [dm3] 3L_10385465_SNP [dm6]	G	A	2.773e^-4	0.924	UPSTREAM CR45245 INTERGENIC
X	15431132	X_15431132_SNP [dm3] X_15537099_SNP [dm6]	G	A	2.781e^-4	0.924	INTRON Ac13E
2L	810626	2L_810626_SNP [dm3] 2L_810626_SNP [dm6]	G	C	2.792e^-4	0.924	UTR_5_PRIME Nnf1b UPSTREAM Dbp21E2
X	9898801	X_9898801_SNP [dm3] X_10004768_SNP [dm6]	A	G	2.793e^-4	0.924	INTRON CG32694
3L	20042417	3L_20042417_SNP [dm3] 3L_20049317_SNP [dm6]	T	C	2.800e^-4	0.924	INTERGENIC
3R	8103861	3R_8103861_SNP [dm3] 3R_12278139_SNP [dm6]	T	A	2.810e^-4	0.924	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	15193985	X_15193985_SNP [dm3] X_15299952_SNP [dm6]	C	T	2.813e^-4	0.924	UPSTREAM gce INTRON gce
X	8052532	X_8052532_SNP [dm3] X_8158499_SNP [dm6]	C	A	2.815e^-4	0.924	INTRON GIIIspla2	TF binding site mE1_TFBS_cad
3R	12736845	3R_12736845_SNP [dm3] 3R_16911123_SNP [dm6]	T	C	2.818e^-4	0.924	INTRON iab-8
3L	6764699	3L_6764699_SNP [dm3] 3L_6771599_SNP [dm6]	C	A	2.818e^-4	0.924	INTERGENIC
3R	11580383	3R_11580383_SNP [dm3] 3R_15754661_SNP [dm6]	G	A	2.819e^-4	0.924	INTERGENIC
3R	25555296	3R_25555296_SNP [dm3] 3R_29729574_SNP [dm6]	A	G	2.821e^-4	0.924	INTRON Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	10695068	3L_10695068_SNP [dm3] 3L_10701968_SNP [dm6]	A	G	2.824e^-4	0.924	INTERGENIC
3L	2358767	3L_2358767_SNP [dm3] 3L_2358767_SNP [dm6]	G	T	2.825e^-4	0.924	INTERGENIC
2L	2819729	2L_2819729_SNP [dm3] 2L_2819729_SNP [dm6]	T	C	2.826e^-4	0.924	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad
3L	12454949	3L_12454949_SNP [dm3] 3L_12461849_SNP [dm6]	A	T	2.828e^-4	0.924	DOWNSTREAM eyg INTERGENIC	TF binding site mE1_TFBS_inv
3L	10294022	3L_10294022_SNP [dm3] 3L_10300922_SNP [dm6]	T	A	2.832e^-4	0.924	INTERGENIC
2R	5634948	2R_5634948_SNP [dm3] 2R_9747443_SNP [dm6]	A	T	2.834e^-4	0.924	UTR_5_PRIME sqa
3L	5729005	3L_5729005_SNP [dm3] 3L_5735905_SNP [dm6]	C	T	2.839e^-4	0.924	SYNONYMOUS_CODING sif
2L	11392260	2L_11392260_SNP [dm3] 2L_11392260_SNP [dm6]	C	A	2.841e^-4	0.924	EXON CR43681	regulatory region REDfly_CRMs
3R	12896174	3R_12896174_SNP [dm3] 3R_17070452_SNP [dm6]	A	G	2.843e^-4	0.924	DOWNSTREAM Ns1 & 1 other INTERGENIC
2R	20588700	2R_20588700_SNP [dm3] 2R_24701177_SNP [dm6]	T	A	2.851e^-4	0.924	SYNONYMOUS_CODING Mid1
X	3439014	X_3439014_DEL [dm3] X_3544981_DEL [dm6]	TT	T	2.857e^-4	0.924	DOWNSTREAM CR34335 INTRON CG32791
2L	14344300	2L_14344300_SNP [dm3] 2L_14344300_SNP [dm6]	A	C	2.872e^-4	0.924	NON_SYNONYMOUS_CODING CG33090
2R	17355313	2R_17355313_DEL [dm3] 2R_21467808_DEL [dm6]	ATGTA	A	2.872e^-4	0.924	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15442837	3R_15442837_SNP [dm3] 3R_19617115_SNP [dm6]	C	T	2.879e^-4	0.924	INTRON CG6231
X	18165846	X_18165846_SNP [dm3] X_18271813_SNP [dm6]	T	C	2.893e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8363132	2L_8363132_SNP [dm3] 2L_8363132_SNP [dm6]	G	T	2.906e^-4	0.924	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2693939	2L_2693939_SNP [dm3] 2L_2693939_SNP [dm6]	T	C	2.908e^-4	0.924	INTRON CG31690
3R	2011340	3R_2011340_SNP [dm3] 3R_6185618_SNP [dm6]	G	A	2.926e^-4	0.924	EXON CR31562
3L	16152546	3L_16152546_SNP [dm3] 3L_16159446_SNP [dm6]	G	T	2.928e^-4	0.924	INTRON CG5151
2L	16578704	2L_16578704_SNP [dm3] 2L_16578704_SNP [dm6]	G	T	2.933e^-4	0.924	INTRON CG42389
3L	5932662	3L_5932662_DEL [dm3] 3L_5939562_DEL [dm6]	TA	T	2.938e^-4	0.924	INTRON CG33993
3R	14860351	3R_14860351_DEL [dm3] 3R_19034629_DEL [dm6]	AACAGAAACAGCAGAATCAG...	A	2.941e^-4	0.924	INTRON CG6026	TF binding site BDTNP1_TFBS_twi
X	20908441	X_20908441_SNP [dm3] X_21037414_SNP [dm6]	C	A	2.954e^-4	0.924	INTRON Ntf-2
3R	21277821	3R_21277821_SNP [dm3] 3R_25452099_SNP [dm6]	T	A	2.955e^-4	0.924	INTRON Fur1
2L	11400010	2L_11400010_SNP [dm3] 2L_11400010_SNP [dm6]	T	C	2.958e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs
3L	14173978	3L_14173978_SNP [dm3] 3L_14180878_SNP [dm6]	C	G	2.961e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	9547598	3L_9547598_SNP [dm3] 3L_9554498_SNP [dm6]	G	T	2.967e^-4	0.924	INTRON CG42673
3R	5652815	3R_5652815_DEL [dm3] 3R_9827093_DEL [dm6]	CT	C	2.971e^-4	0.924	UTR_3_PRIME Teh1
2R	6994584	2R_6994584_INS [dm3] 2R_11107079_INS [dm6]	A	ACATAC	2.973e^-4	0.924	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	10885678	2L_10885678_SNP [dm3] 2L_10885678_SNP [dm6]	T	C	2.983e^-4	0.924	UPSTREAM CR44490 INTERGENIC
3R	9952530	3R_9952530_SNP [dm3] 3R_14126808_SNP [dm6]	G	A	2.988e^-4	0.924	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6291088	3R_6291088_SNP [dm3] 3R_10465366_SNP [dm6]	G	A	2.990e^-4	0.924	UPSTREAM CR44955 INTERGENIC
3R	4998445	3R_4998445_SNP [dm3] 3R_9172723_SNP [dm6]	T	C	2.991e^-4	0.924	INTRON pum	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	13682252	2L_13682252_SNP [dm3] 2L_13682252_SNP [dm6]	A	G	3.009e^-4	0.924	INTRON CG31814
X	3459657	X_3459657_DEL [dm3] X_3565624_DEL [dm6]	TATATGCACACGTAT...	T	3.015e^-4	0.924	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	14012555	2L_14012555_SNP [dm3] 2L_14012555_SNP [dm6]	T	C	3.021e^-4	0.924	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4903477	2L_4903477_SNP [dm3] 2L_4903477_SNP [dm6]	C	T	3.024e^-4	0.924	UTR_3_PRIME CG3036 DOWNSTREAM CG2837 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12176468	2R_12176468_SNP [dm3] 2R_16288963_SNP [dm6]	G	A	3.031e^-4	0.924	UTR_5_PRIME CG30099 UPSTREAM CG30324 & 1 other INTRON CR43730	TF binding site mE1_TFBS_cad
2L	20389634	2L_20389634_SNP [dm3] 2L_20389634_SNP [dm6]	T	C	3.037e^-4	0.924	INTRON CG10947
3L	9547165	3L_9547165_SNP [dm3] 3L_9554065_SNP [dm6]	G	A	3.040e^-4	0.924	INTRON CG42673
3R	15385238	3R_15385238_SNP [dm3] 3R_19559516_SNP [dm6]	A	G	3.043e^-4	0.924	INTRON Dys
2L	2338755	2L_2338755_SNP [dm3] 2L_2338755_SNP [dm6]	T	C	3.049e^-4	0.924	INTRON CG9967 & 1 other
3L	17690539	3L_17690539_SNP [dm3] 3L_17697439_SNP [dm6]	T	C	3.065e^-4	0.924	INTRON Ccn
2L	3668746	2L_3668746_SNP [dm3] 2L_3668746_SNP [dm6]	T	G	3.066e^-4	0.924	SYNONYMOUS_CODING CG42463 UPSTREAM Sfp24Ba DOWNSTREAM Sfp24Bb INTRON CG34340
3L	1007163	3L_1007163_SNP [dm3] 3L_1007163_SNP [dm6]	C	T	3.067e^-4	0.924	INTRON trio
3R	15442929	3R_15442929_SNP [dm3] 3R_19617207_SNP [dm6]	G	A	3.073e^-4	0.924	INTRON CG6231
2R	6995724	2R_6995724_SNP [dm3] 2R_11108219_SNP [dm6]	T	C	3.081e^-4	0.924	INTRON luna	TF binding site mE1_TFBS_Trl
2L	13639579	2L_13639579_SNP [dm3] 2L_13639579_SNP [dm6]	T	A	3.083e^-4	0.924	UTR_3_PRIME ics DOWNSTREAM kuz	TF binding site mE1_TFBS_HSA
3R	12736831	3R_12736831_SNP [dm3] 3R_16911109_SNP [dm6]	G	A	3.083e^-4	0.924	INTRON iab-8
3L	1606381	3L_1606381_SNP [dm3] 3L_1606381_SNP [dm6]	T	C	3.084e^-4	0.924	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11221091	X_11221091_SNP [dm3] X_11327058_SNP [dm6]	G	A	3.087e^-4	0.924	INTRON CG1657	TF binding site BDTNP1_TFBS_dl
3L	1921376	3L_1921376_SNP [dm3] 3L_1921376_SNP [dm6]	G	A	3.087e^-4	0.924	UTR_5_PRIME Dbx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8856113	2R_8856113_SNP [dm3] 2R_12968608_SNP [dm6]	C	A	3.088e^-4	0.924	NON_SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2158926	2L_2158926_SNP [dm3] 2L_2158926_SNP [dm6]	C	T	3.091e^-4	0.924	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8280565	2L_8280565_SNP [dm3] 2L_8280565_SNP [dm6]	T	A	3.096e^-4	0.924	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2L	14545079	2L_14545079_SNP [dm3] 2L_14545079_SNP [dm6]	T	C	3.104e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4259897	2L_4259897_SNP [dm3] 2L_4259897_SNP [dm6]	T	A	3.105e^-4	0.924	DOWNSTREAM CR44080 INTERGENIC
3R	10626863	3R_10626863_SNP [dm3] 3R_14801141_SNP [dm6]	A	G	3.107e^-4	0.924	UTR_3_PRIME CG14856 UPSTREAM CG14857
3R	12202970	3R_12202970_SNP [dm3] 3R_16377248_SNP [dm6]	T	C	3.109e^-4	0.924	SYNONYMOUS_CODING ss	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1683450	3L_1683450_SNP [dm3] 3L_1683450_SNP [dm6]	T	G	3.111e^-4	0.924	INTRON CG7991
2L	8377077	2L_8377077_SNP [dm3] 2L_8377077_SNP [dm6]	G	C	3.114e^-4	0.924	UTR_5_PRIME CG17294 UPSTREAM CG13390	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5433449	3L_5433449_SNP [dm3] 3L_5440349_SNP [dm6]	C	A	3.116e^-4	0.924	UTR_3_PRIME CG34391 DOWNSTREAM CG34391
3R	15442810	3R_15442810_SNP [dm3] 3R_19617088_SNP [dm6]	C	T	3.116e^-4	0.924	INTRON CG6231
3R	18983635	3R_18983635_DEL [dm3] 3R_23157913_DEL [dm6]	AA	A	3.121e^-4	0.924	UPSTREAM unk DOWNSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3802736	3L_3802736_SNP [dm3] 3L_3802736_SNP [dm6]	G	A	3.130e^-4	0.924	INTRON CG32264
2R	17547598	2R_17547598_SNP [dm3] 2R_21660093_SNP [dm6]	A	G	3.133e^-4	0.924	UPSTREAM Rae1 DOWNSTREAM pirk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	6442536	3R_6442536_INS [dm3] 3R_10616814_INS [dm6]	A	AA	3.133e^-4	0.924	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4712572	2L_4712572_SNP [dm3] 2L_4712572_SNP [dm6]	A	G	3.136e^-4	0.924	INTRON CG34351
2L	15400331	2L_15400331_SNP [dm3] 2L_15400331_SNP [dm6]	C	G	3.140e^-4	0.924	UPSTREAM CR44860 EXON CR45374
X	13720801	X_13720801_SNP [dm3] X_13826768_SNP [dm6]	A	C	3.143e^-4	0.924	DOWNSTREAM Nup93-1 INTRON jub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6982760	2L_6982760_SNP [dm3] 2L_6982760_SNP [dm6]	G	A	3.144e^-4	0.924	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25258227	3R_25258227_SNP [dm3] 3R_29432505_SNP [dm6]	C	G	3.160e^-4	0.924	INTRON Ptp99A
2R	14883324	2R_14883324_INS [dm3] 2R_18995819_INS [dm6]	T	TAAT	3.165e^-4	0.924	DOWNSTREAM snoRNA:abba-a INTRON tn
3R	14738317	3R_14738317_SNP [dm3] 3R_18912595_SNP [dm6]	A	C	3.167e^-4	0.924	SYNONYMOUS_CODING CG14291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5635129	2R_5635129_SNP [dm3] 2R_9747624_SNP [dm6]	T	C	3.179e^-4	0.924	UTR_5_PRIME sqa
3L	3097440	3L_3097440_SNP [dm3] 3L_3097440_SNP [dm6]	A	G	3.193e^-4	0.924	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32287 & 1 other INTRON Cht7
X	14670524	X_14670524_SNP [dm3] X_14776491_SNP [dm6]	G	T	3.194e^-4	0.924	UPSTREAM CG5347 DOWNSTREAM CG5334 INTERGENIC
X	19327904	X_19327904_SNP [dm3] X_19433871_SNP [dm6]	T	C	3.200e^-4	0.924	INTRON kek5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2418326	3L_2418326_SNP [dm3] 3L_2418326_SNP [dm6]	A	G	3.202e^-4	0.924	START_GAINED CG45186 UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19252433	2R_19252433_SNP [dm3] 2R_23364910_SNP [dm6]	C	T	3.208e^-4	0.924	SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7865757	3R_7865757_SNP [dm3] 3R_12040035_SNP [dm6]	G	T	3.213e^-4	0.924	UPSTREAM CG14736 INTERGENIC
3L	3356500	3L_3356500_SNP [dm3] 3L_3356500_SNP [dm6]	A	T	3.217e^-4	0.924	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20588243	2R_20588243_SNP [dm3] 2R_24700720_SNP [dm6]	C	A	3.218e^-4	0.924	STOP_GAINED Mid1
X	17505091	X_17505091_SNP [dm3] X_17611058_SNP [dm6]	A	G	3.218e^-4	0.924	INTERGENIC
X	6682885	X_6682885_SNP [dm3] X_6788852_SNP [dm6]	T	G	3.228e^-4	0.924	SYNONYMOUS_CODING C3G UTR_5_PRIME C3G	TF binding site mE1_TFBS_chinmo
X	21898931	X_21898931_SNP [dm3] X_22497095_SNP [dm6]	G	A	3.234e^-4	0.924	INTRON l_1_G0196
X	4954203	X_4954203_SNP [dm3] X_5060170_SNP [dm6]	G	A	3.239e^-4	0.924	INTRON CR44833 & 1 other
X	11392750	X_11392750_SNP [dm3] X_11498717_SNP [dm6]	C	T	3.242e^-4	0.924	INTRON Drak
3R	9679238	3R_9679238_SNP [dm3] 3R_13853516_SNP [dm6]	T	C	3.243e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19223385	3R_19223385_SNP [dm3] 3R_23397663_SNP [dm6]	C	T	3.262e^-4	0.924	INTERGENIC
2L	8661063	2L_8661063_SNP [dm3] 2L_8661063_SNP [dm6]	A	C	3.263e^-4	0.924	INTRON Sema-1a
2L	4420778	2L_4420778_SNP [dm3] 2L_4420778_SNP [dm6]	T	C	3.272e^-4	0.924	INTRON CG15431
X	13822943	X_13822943_SNP [dm3] X_13928910_SNP [dm6]	C	G	3.275e^-4	0.924	INTRON mamo
3L	8363534	3L_8363534_INS [dm3] 3L_8370434_INS [dm6]	A	ACAATA	3.280e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14545691	2L_14545691_SNP [dm3] 2L_14545691_SNP [dm6]	T	G	3.281e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9004040	3R_9004040_SNP [dm3] 3R_13178318_SNP [dm6]	A	G	3.281e^-4	0.924	INTERGENIC
X	15498534	X_15498534_SNP [dm3] X_15604501_SNP [dm6]	A	C	3.284e^-4	0.924	UTR_3_PRIME sog DOWNSTREAM sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	3017082	3R_3017082_SNP [dm3] 3R_7191360_SNP [dm6]	A	G	3.287e^-4	0.924	INTRON lap
2L	13155638	2L_13155638_SNP [dm3] 2L_13155638_SNP [dm6]	G	A	3.290e^-4	0.924	INTERGENIC
2L	16578724	2L_16578724_SNP [dm3] 2L_16578724_SNP [dm6]	A	C	3.290e^-4	0.924	INTRON CG42389
3R	25555058	3R_25555058_SNP [dm3] 3R_29729336_SNP [dm6]	C	T	3.292e^-4	0.924	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da
3R	13202212	3R_13202212_SNP [dm3] 3R_17376490_SNP [dm6]	A	G	3.295e^-4	0.924	SYNONYMOUS_CODING Brf
2L	2598498	2L_2598498_SNP [dm3] 2L_2598498_SNP [dm6]	C	A	3.298e^-4	0.924	DOWNSTREAM CR44790 INTERGENIC
3L	15696722	3L_15696722_SNP [dm3] 3L_15703622_SNP [dm6]	T	C	3.302e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15385102	2R_15385102_SNP [dm3] 2R_19497597_SNP [dm6]	A	C	3.303e^-4	0.924	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25555073	3R_25555073_SNP [dm3] 3R_29729351_SNP [dm6]	C	T	3.313e^-4	0.924	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da
3L	10294133	3L_10294133_SNP [dm3] 3L_10301033_SNP [dm6]	T	C	3.313e^-4	0.924	INTERGENIC
2L	8372703	2L_8372703_SNP [dm3] 2L_8372703_SNP [dm6]	C	T	3.332e^-4	0.924	SYNONYMOUS_CODING CG17292
3R	15189694	3R_15189694_SNP [dm3] 3R_19363972_SNP [dm6]	A	G	3.344e^-4	0.924	INTERGENIC
2R	4348328	2R_4348328_SNP [dm3] 2R_8460823_SNP [dm6]	G	T	3.373e^-4	0.924	SYNONYMOUS_CODING Mal-A4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12636335	2R_12636335_SNP [dm3] 2R_16748830_SNP [dm6]	A	T	3.374e^-4	0.924	UTR_3_PRIME Acp53C14b UPSTREAM Acp53C14a DOWNSTREAM Acp53C14b & 1 other
2L	11866412	2L_11866412_SNP [dm3] 2L_11866412_SNP [dm6]	C	T	3.376e^-4	0.924	INTRON Pde1c
3R	7245220	3R_7245220_SNP [dm3] 3R_11419498_SNP [dm6]	A	G	3.378e^-4	0.924	SYNONYMOUS_CODING ninaG UPSTREAM CG6723 DOWNSTREAM CG45676
3R	26929385	3R_26929385_SNP [dm3] 3R_31103663_SNP [dm6]	A	T	3.393e^-4	0.924	INTERGENIC
2L	3211532	2L_3211532_INS [dm3] 2L_3211532_INS [dm6]	T	TT	3.400e^-4	0.924	DOWNSTREAM CR45336 INTERGENIC
2R	19880062	2R_19880062_SNP [dm3] 2R_23992539_SNP [dm6]	A	G	3.403e^-4	0.924	NON_SYNONYMOUS_CODING CG3860 DOWNSTREAM Pask & 1 other
3L	10892866	3L_10892866_SNP [dm3] 3L_10899766_SNP [dm6]	A	C	3.418e^-4	0.924	UPSTREAM Aps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	3221726	2L_3221726_DEL [dm3] 2L_3221726_DEL [dm6]	TT	T	3.419e^-4	0.924	INTERGENIC
3L	12680944	3L_12680944_SNP [dm3] 3L_12687844_SNP [dm6]	T	G	3.422e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18983627	3R_18983627_SNP [dm3] 3R_23157905_SNP [dm6]	A	T	3.427e^-4	0.924	UPSTREAM unk DOWNSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4161955	3L_4161955_SNP [dm3] 3L_4161955_SNP [dm6]	C	T	3.433e^-4	0.924	UTR_3_PRIME mas	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	19302152	2R_19302152_SNP [dm3] 2R_23414629_SNP [dm6]	G	C	3.433e^-4	0.924	SYNONYMOUS_CODING CG9812	TF binding site mE1_TFBS_chinmo
3R	11085865	3R_11085865_DEL [dm3] 3R_15260143_DEL [dm6]	ATA	A	3.449e^-4	0.924	UTR_3_PRIME Su_var_3-9 INTRON eIF-2gamma
X	9664563	X_9664563_SNP [dm3] X_9770530_SNP [dm6]	A	C	3.453e^-4	0.924	INTERGENIC
3R	15342867	3R_15342867_SNP [dm3] 3R_19517145_SNP [dm6]	T	C	3.454e^-4	0.924	INTRON Dys
3R	9718801	3R_9718801_SNP [dm3] 3R_13893079_SNP [dm6]	T	C	3.455e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	6426073	3R_6426073_SNP [dm3] 3R_10600351_SNP [dm6]	G	C	3.467e^-4	0.924	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	6490623	2R_6490623_SNP [dm3] 2R_10603118_SNP [dm6]	A	C	3.468e^-4	0.924	INTRON psq	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13759760	2R_13759760_SNP [dm3] 2R_17872255_SNP [dm6]	T	A	3.472e^-4	0.924	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	11406122	2L_11406122_SNP [dm3] 2L_11406122_SNP [dm6]	G	T	3.476e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs
2L	8371361	2L_8371361_SNP [dm3] 2L_8371361_SNP [dm6]	G	A	3.477e^-4	0.924	UPSTREAM CR45341 INTRON CG17292
3R	6711497	3R_6711497_SNP [dm3] 3R_10885775_SNP [dm6]	T	G	3.488e^-4	0.924	UTR_5_PRIME Leash UPSTREAM CG14696	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18126729	3L_18126729_SNP [dm3] 3L_18133629_SNP [dm6]	A	G	3.497e^-4	0.924	UPSTREAM Cyp312a1 INTERGENIC
X	15585853	X_15585853_SNP [dm3] X_15691820_SNP [dm6]	T	A	3.498e^-4	0.924	UPSTREAM CR45523 DOWNSTREAM CG43132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	7993665	3L_7993665_DEL [dm3] 3L_8000565_DEL [dm6]	CT	C	3.511e^-4	0.924	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15151178	3R_15151178_SNP [dm3] 3R_19325456_SNP [dm6]	G	A	3.514e^-4	0.924	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	6441980	3R_6441980_SNP [dm3] 3R_10616258_SNP [dm6]	C	T	3.523e^-4	0.924	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8304586	2R_8304586_SNP [dm3] 2R_12417081_SNP [dm6]	A	T	3.527e^-4	0.924	INTRON CG13157	TF binding site mE1_TFBS_cad
3L	9545435	3L_9545435_SNP [dm3] 3L_9552335_SNP [dm6]	T	C	3.528e^-4	0.924	INTRON CG42673
3R	13934577	3R_13934577_SNP [dm3] 3R_18108855_SNP [dm6]	A	T	3.537e^-4	0.924	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
2R	6997407	2R_6997407_SNP [dm3] 2R_11109902_SNP [dm6]	A	G	3.541e^-4	0.924	INTRON luna
2L	7750333	2L_7750333_SNP [dm3] 2L_7750333_SNP [dm6]	T	A	3.551e^-4	0.924	INTERGENIC
3L	13342787	3L_13342787_SNP [dm3] 3L_13349687_SNP [dm6]	T	C	3.566e^-4	0.924	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11081343	2R_11081343_SNP [dm3] 2R_15193838_SNP [dm6]	T	A	3.567e^-4	0.924	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
2L	5562854	2L_5562854_SNP [dm3] 2L_5562854_SNP [dm6]	C	T	3.577e^-4	0.924	INTRON GluRIIB	TF binding site mE1_TFBS_cad
2R	12105005	2R_12105005_SNP [dm3] 2R_16217500_SNP [dm6]	C	G	3.584e^-4	0.924	INTRON mrj
X	2239200	X_2239200_SNP [dm3] X_2345167_SNP [dm6]	G	A	3.588e^-4	0.924	UTR_3_PRIME ptr UPSTREAM mRpL14 DOWNSTREAM ptr	TF binding site BDTNP1_TFBS_Med
2L	2266067	2L_2266067_SNP [dm3] 2L_2266067_SNP [dm6]	G	A	3.595e^-4	0.924	UPSTREAM CG34049 INTERGENIC
2L	5103259	2L_5103259_SNP [dm3] 2L_5103259_SNP [dm6]	A	G	3.602e^-4	0.924	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4629893	2L_4629893_SNP [dm3] 2L_4629893_SNP [dm6]	T	C	3.605e^-4	0.924	INTERGENIC
3L	13818237	3L_13818237_SNP [dm3] 3L_13825137_SNP [dm6]	G	A	3.625e^-4	0.924	INTERGENIC
X	4539562	X_4539562_SNP [dm3] X_4645529_SNP [dm6]	C	A	3.636e^-4	0.924	UTR_3_PRIME HLH4C UPSTREAM CG3062	TF binding site mE1_TFBS_chinmo
X	6708942	X_6708942_SNP [dm3] X_6814909_SNP [dm6]	C	T	3.639e^-4	0.924	SYNONYMOUS_CODING iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14603669	3L_14603669_SNP [dm3] 3L_14610569_SNP [dm6]	G	T	3.646e^-4	0.924	INTERGENIC
2L	4883892	2L_4883892_SNP [dm3] 2L_4883892_SNP [dm6]	T	C	3.649e^-4	0.924	SYNONYMOUS_CODING CG3008 UPSTREAM Cf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	19792664	2R_19792664_SNP [dm3] 2R_23905141_SNP [dm6]	G	A	3.653e^-4	0.924	UTR_3_PRIME CG13562 DOWNSTREAM Nap1
2R	19792667	2R_19792667_SNP [dm3] 2R_23905144_SNP [dm6]	T	C	3.653e^-4	0.924	UTR_3_PRIME CG13562 DOWNSTREAM Nap1
3L	4161918	3L_4161918_SNP [dm3] 3L_4161918_SNP [dm6]	C	T	3.657e^-4	0.924	UTR_3_PRIME mas UPSTREAM nab	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4104700	2L_4104700_SNP [dm3] 2L_4104700_SNP [dm6]	A	G	3.665e^-4	0.924	INTRON ed
2L	6982640	2L_6982640_SNP [dm3] 2L_6982640_SNP [dm6]	G	C	3.667e^-4	0.924	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6995719	2R_6995719_SNP [dm3] 2R_11108214_SNP [dm6]	G	T	3.668e^-4	0.924	INTRON luna	TF binding site mE1_TFBS_Trl
2L	10329287	2L_10329287_SNP [dm3] 2L_10329287_SNP [dm6]	A	T	3.673e^-4	0.924	INTRON CG5375
3R	9006961	3R_9006961_SNP [dm3] 3R_13181239_SNP [dm6]	G	T	3.679e^-4	0.924	UPSTREAM CG8138 INTERGENIC
3L	9974450	3L_9974450_SNP [dm3] 3L_9981350_SNP [dm6]	A	G	3.725e^-4	0.924	INTRON dpr6
3L	9545483	3L_9545483_SNP [dm3] 3L_9552383_SNP [dm6]	C	A	3.727e^-4	0.924	INTRON CG42673
2R	5635200	2R_5635200_INS [dm3] 2R_9747695_INS [dm6]	C	CCTTC	3.728e^-4	0.924	UTR_5_PRIME sqa
2R	12753744	2R_12753744_SNP [dm3] 2R_16866239_SNP [dm6]	G	A	3.739e^-4	0.924	SYNONYMOUS_CODING Psi	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	18595907	3L_18595907_SNP [dm3] 3L_18602807_SNP [dm6]	T	A	3.745e^-4	0.924	UPSTREAM CG4174 & 1 other INTRON CG4174 & 1 other
3R	11085191	3R_11085191_SNP [dm3] 3R_15259469_SNP [dm6]	A	G	3.745e^-4	0.924	SYNONYMOUS_CODING eIF-2gamma DOWNSTREAM Su_var_3-9
2L	14834662	2L_14834662_SNP [dm3] 2L_14834662_SNP [dm6]	G	A	3.749e^-4	0.924	INTERGENIC
2R	20029931	2R_20029931_SNP [dm3] 2R_24142408_SNP [dm6]	C	G	3.750e^-4	0.924	INTRON Dat
2L	12928644	2L_12928644_SNP [dm3] 2L_12928644_SNP [dm6]	G	A	3.751e^-4	0.924	SYNONYMOUS_CODING ACXE
3L	12382313	3L_12382313_SNP [dm3] 3L_12389213_SNP [dm6]	C	A	3.764e^-4	0.924	INTRON Ncc69
2L	15223897	2L_15223897_SNP [dm3] 2L_15223897_SNP [dm6]	C	T	3.772e^-4	0.924	INTERGENIC
3R	8997221	3R_8997221_SNP [dm3] 3R_13171499_SNP [dm6]	T	C	3.777e^-4	0.924	INTERGENIC
2L	2158913	2L_2158913_SNP [dm3] 2L_2158913_SNP [dm6]	C	T	3.777e^-4	0.924	NON_SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8372834	2L_8372834_SNP [dm3] 2L_8372834_SNP [dm6]	T	A	3.784e^-4	0.924	INTRON CG17292	TF binding site mE1_TFBS_HSA
2R	19877840	2R_19877840_SNP [dm3] 2R_23990317_SNP [dm6]	G	A	3.792e^-4	0.924	SYNONYMOUS_CODING Pask	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12666797	2L_12666797_SNP [dm3] 2L_12666797_SNP [dm6]	A	G	3.793e^-4	0.924	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10469646	2R_10469646_SNP [dm3] 2R_14582141_SNP [dm6]	G	A	3.800e^-4	0.924	INTRON ttv
2L	6982595	2L_6982595_SNP [dm3] 2L_6982595_SNP [dm6]	A	G	3.802e^-4	0.924	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7776511	X_7776511_SNP [dm3] X_7882478_SNP [dm6]	C	G	3.808e^-4	0.924	NON_SYNONYMOUS_CODING Ir7f UPSTREAM Ir7e
3R	9718790	3R_9718790_SNP [dm3] 3R_13893068_SNP [dm6]	G	A	3.811e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	2143581	3L_2143581_SNP [dm3] 3L_2143581_SNP [dm6]	G	A	3.816e^-4	0.924	INTRON zormin
2L	15330295	2L_15330295_SNP [dm3] 2L_15330295_SNP [dm6]	T	A	3.817e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad
2L	2809799	2L_2809799_SNP [dm3] 2L_2809799_SNP [dm6]	C	G	3.820e^-4	0.924	SYNONYMOUS_CODING daw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22294878	3R_22294878_SNP [dm3] 3R_26469156_SNP [dm6]	C	G	3.820e^-4	0.924	DOWNSTREAM plum INTRON CG5455
2L	5567395	2L_5567395_INS [dm3] 2L_5567395_INS [dm6]	A	ACA	3.821e^-4	0.924	INTERGENIC
3R	21022559	3R_21022559_SNP [dm3] 3R_25196837_SNP [dm6]	A	C	3.821e^-4	0.924	DOWNSTREAM CG13653 & 1 other INTERGENIC
3R	23913831	3R_23913831_SNP [dm3] 3R_28088109_SNP [dm6]	G	A	3.827e^-4	0.924	UTR_3_PRIME CG34362
3L	3356341	3L_3356341_SNP [dm3] 3L_3356341_SNP [dm6]	A	G	3.828e^-4	0.924	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19255988	2R_19255988_SNP [dm3] 2R_23368465_SNP [dm6]	G	A	3.834e^-4	0.924	INTRON Ice1	TF binding site mE1_TFBS_cad
3L	12730756	3L_12730756_SNP [dm3] 3L_12737656_SNP [dm6]	C	T	3.839e^-4	0.924	NON_SYNONYMOUS_CODING Ptp69D	TF binding site mE1_TFBS_HSA
3R	22113094	3R_22113094_SNP [dm3] 3R_26287372_SNP [dm6]	C	T	3.842e^-4	0.924	INTERGENIC
X	2544521	X_2544521_DEL [dm3] X_2650488_DEL [dm6]	GAGATTACATTATA...	G	3.847e^-4	0.924	INTRON sgg
X	21905317	X_21905317_SNP [dm3] X_22503481_SNP [dm6]	G	A	3.851e^-4	0.924	SYNONYMOUS_CODING l_1_G0196
3R	13152705	3R_13152705_SNP [dm3] 3R_17326983_SNP [dm6]	A	G	3.853e^-4	0.924	INTRON beat-IIa
3R	13765469	3R_13765469_INS [dm3] 3R_17939747_INS [dm6]	G	GCGTTT	3.856e^-4	0.924	INTRON cpo	TF binding site mE1_TFBS_sens
3R	18465134	3R_18465134_SNP [dm3] 3R_22639412_SNP [dm6]	G	T	3.857e^-4	0.924	UPSTREAM CG45058 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	18828967	3R_18828967_SNP [dm3] 3R_23003245_SNP [dm6]	T	C	3.858e^-4	0.924	INTRON CG34375
X	9008581	X_9008581_SNP [dm3] X_9114548_SNP [dm6]	T	C	3.872e^-4	0.924	SYNONYMOUS_CODING AP-1gamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4876246	3R_4876246_SNP [dm3] 3R_9050524_SNP [dm6]	G	A	3.888e^-4	0.924	UTR_5_PRIME Nmdmc UPSTREAM Mst85C INTRON Mst85C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	23907395	3R_23907395_SNP [dm3] 3R_28081673_SNP [dm6]	T	G	3.893e^-4	0.924	INTRON CG34362
3L	1365195	3L_1365195_SNP [dm3] 3L_1365195_SNP [dm6]	C	T	3.894e^-4	0.924	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	14419982	X_14419982_SNP [dm3] X_14525949_SNP [dm6]	G	C	3.895e^-4	0.924	INTERGENIC
3R	15674062	3R_15674062_DEL [dm3] 3R_19848340_DEL [dm6]	GGAGATGAACATAGTAATCA...	G	3.922e^-4	0.924	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4629895	2L_4629895_SNP [dm3] 2L_4629895_SNP [dm6]	A	G	3.927e^-4	0.924	INTERGENIC
3R	22113072	3R_22113072_SNP [dm3] 3R_26287350_SNP [dm6]	T	A	3.927e^-4	0.924	INTERGENIC
X	10027509	X_10027509_SNP [dm3] X_10133476_SNP [dm6]	C	T	3.947e^-4	0.924	INTRON CR44894 & 1 other
X	13221353	X_13221353_DEL [dm3] X_13327320_DEL [dm6]	TT	T	3.951e^-4	0.924	INTRON IP3K2
2R	2079770	2R_2079770_DEL [dm3] 2R_6192265_DEL [dm6]	CATCATC	C	3.952e^-4	0.924	INTRON Ptr	TF binding site BDTNP1_TFBS_dl
2L	12188129	2L_12188129_SNP [dm3] 2L_12188129_SNP [dm6]	C	A	3.963e^-4	0.924	INTRON aret
3L	13329225	3L_13329225_SNP [dm3] 3L_13336125_SNP [dm6]	T	C	3.966e^-4	0.924	INTERGENIC
2L	8346154	2L_8346154_SNP [dm3] 2L_8346154_SNP [dm6]	C	T	3.970e^-4	0.924	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9929785	2R_9929785_SNP [dm3] 2R_14042280_SNP [dm6]	T	A	3.975e^-4	0.924	INTRON mam
2L	15814208	2L_15814208_SNP [dm3] 2L_15814208_SNP [dm6]	C	T	3.978e^-4	0.924	INTERGENIC
X	11221089	X_11221089_SNP [dm3] X_11327056_SNP [dm6]	C	G	3.981e^-4	0.924	INTRON CG1657	TF binding site BDTNP1_TFBS_dl
X	4553491	X_4553491_SNP [dm3] X_4659458_SNP [dm6]	G	A	3.984e^-4	0.924	SYNONYMOUS_CODING CG3009 INTRON CG3009	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	7776518	X_7776518_SNP [dm3] X_7882485_SNP [dm6]	T	A	3.992e^-4	0.924	SYNONYMOUS_CODING Ir7f UPSTREAM Ir7e
2R	7226486	2R_7226486_SNP [dm3] 2R_11338981_SNP [dm6]	T	C	3.996e^-4	0.924	UPSTREAM kappaTry DOWNSTREAM zetaTry INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	1199921	X_1199921_DEL [dm3] X_1305888_DEL [dm6]	GG	G	3.996e^-4	0.924	INTRON DAAM
3R	12930544	3R_12930544_SNP [dm3] 3R_17104822_SNP [dm6]	G	A	4.008e^-4	0.924	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12931309	3R_12931309_SNP [dm3] 3R_17105587_SNP [dm6]	T	C	4.008e^-4	0.924	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad
3R	12931782	3R_12931782_SNP [dm3] 3R_17106060_SNP [dm6]	G	C	4.008e^-4	0.924	INTRON cher
2L	4420792	2L_4420792_SNP [dm3] 2L_4420792_SNP [dm6]	A	G	4.010e^-4	0.924	INTRON CG15431
3R	12934935	3R_12934935_SNP [dm3] 3R_17109213_SNP [dm6]	A	G	4.010e^-4	0.924	INTRON cher
3R	23285239	3R_23285239_SNP [dm3] 3R_27459517_SNP [dm6]	C	T	4.013e^-4	0.924	INTERGENIC
2L	7394617	2L_7394617_SNP [dm3] 2L_7394617_SNP [dm6]	T	A	4.016e^-4	0.924	INTRON CG5160
3L	13342811	3L_13342811_SNP [dm3] 3L_13349711_SNP [dm6]	A	T	4.021e^-4	0.924	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13155614	2L_13155614_SNP [dm3] 2L_13155614_SNP [dm6]	G	T	4.021e^-4	0.924	INTERGENIC
3R	12736854	3R_12736854_SNP [dm3] 3R_16911132_SNP [dm6]	C	T	4.026e^-4	0.924	INTRON iab-8
3R	25249666	3R_25249666_SNP [dm3] 3R_29423944_SNP [dm6]	T	C	4.032e^-4	0.924	INTRON Ptp99A
2R	4312494	2R_4312494_SNP [dm3] 2R_8424989_SNP [dm6]	A	G	4.050e^-4	0.924	INTRON CSN7	TF binding site mE1_TFBS_chinmo
3R	14883999	3R_14883999_INS [dm3] 3R_19058277_INS [dm6]	C	CAGTCATTC	4.053e^-4	0.924	INTRON cdi	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12710967	3L_12710967_DEL [dm3] 3L_12717867_DEL [dm6]	ATTA	A	4.064e^-4	0.924	INTERGENIC
3L	10898144	3L_10898144_SNP [dm3] 3L_10905044_SNP [dm6]	G	T	4.075e^-4	0.924	INTERGENIC
3R	11085815	3R_11085815_SNP [dm3] 3R_15260093_SNP [dm6]	A	C	4.085e^-4	0.924	UTR_3_PRIME Su_var_3-9 INTRON eIF-2gamma
X	8342698	X_8342698_SNP [dm3] X_8448665_SNP [dm6]	G	T	4.090e^-4	0.924	NON_SYNONYMOUS_CODING org-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15346757	3R_15346757_DEL [dm3] 3R_19521035_DEL [dm6]	TGTTGCTTT	T	4.091e^-4	0.924	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6998798	2R_6998798_SNP [dm3] 2R_11111293_SNP [dm6]	C	T	4.092e^-4	0.924	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2646280	3L_2646280_SNP [dm3] 3L_2646280_SNP [dm6]	C	G	4.095e^-4	0.924	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8275999	2L_8275999_SNP [dm3] 2L_8275999_SNP [dm6]	C	G	4.106e^-4	0.924	INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8936884	2R_8936884_SNP [dm3] 2R_13049379_SNP [dm6]	G	A	4.112e^-4	0.924	SYNONYMOUS_CODING CG13324
2R	7908126	2R_7908126_INS [dm3] 2R_12020621_INS [dm6]	A	AG	4.113e^-4	0.924	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
2L	1604009	2L_1604009_SNP [dm3] 2L_1604009_SNP [dm6]	C	T	4.117e^-4	0.924	INTRON CG31935 & 1 other
2L	17262576	2L_17262576_INS [dm3] 2L_17262576_INS [dm6]	A	AA	4.128e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	1395654	3L_1395654_SNP [dm3] 3L_1395654_SNP [dm6]	T	C	4.136e^-4	0.924	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7512774	2R_7512774_SNP [dm3] 2R_11625269_SNP [dm6]	G	A	4.137e^-4	0.924	UTR_5_PRIME CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12725277	2L_12725277_SNP [dm3] 2L_12725277_SNP [dm6]	C	T	4.141e^-4	0.924	INTRON MRP
3R	5079294	3R_5079294_SNP [dm3] 3R_9253572_SNP [dm6]	G	T	4.157e^-4	0.924	DOWNSTREAM St2 EXON CR16735
3L	15456035	3L_15456035_SNP [dm3] 3L_15462935_SNP [dm6]	C	A	4.171e^-4	0.924	INTERGENIC
2R	18452505	2R_18452505_SNP [dm3] 2R_22565000_SNP [dm6]	G	A	4.172e^-4	0.924	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18569066	X_18569066_INS [dm3] X_18675033_INS [dm6]	A	AA	4.177e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14619063	X_14619063_SNP [dm3] X_14725030_SNP [dm6]	C	T	4.179e^-4	0.924	INTRON NetB
X	4553605	X_4553605_SNP [dm3] X_4659572_SNP [dm6]	C	A	4.185e^-4	0.924	SYNONYMOUS_CODING CG3009 INTRON CG3009	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	5420344	2L_5420344_SNP [dm3] 2L_5420344_SNP [dm6]	T	C	4.186e^-4	0.924	INTERGENIC
2L	8365873	2L_8365873_SNP [dm3] 2L_8365873_SNP [dm6]	C	A	4.187e^-4	0.924	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	1673857	2L_1673857_SNP [dm3] 2L_1673857_SNP [dm6]	G	T	4.190e^-4	0.924	INTRON chinmo
3L	11059413	3L_11059413_DEL [dm3] 3L_11066313_DEL [dm6]	AGACCGGAA	A	4.199e^-4	0.924	INTRON SuUR & 1 other	TF binding site mE1_TFBS_sens
3R	14529535	3R_14529535_SNP [dm3] 3R_18703813_SNP [dm6]	A	G	4.201e^-4	0.924	INTERGENIC
3L	14328009	3L_14328009_SNP [dm3] 3L_14334909_SNP [dm6]	G	A	4.207e^-4	0.924	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1912431	2L_1912431_SNP [dm3] 2L_1912431_SNP [dm6]	A	T	4.217e^-4	0.924	INTRON CG7337
X	14190650	X_14190650_SNP [dm3] X_14296617_SNP [dm6]	C	T	4.222e^-4	0.924	INTERGENIC
3L	13594846	3L_13594846_SNP [dm3] 3L_13601746_SNP [dm6]	T	A	4.224e^-4	0.924	INTRON bru-3
3R	10555985	3R_10555985_SNP [dm3] 3R_14730263_SNP [dm6]	C	T	4.224e^-4	0.924	INTRON CG7530
3R	15109489	3R_15109489_SNP [dm3] 3R_19283767_SNP [dm6]	T	C	4.225e^-4	0.924	INTERGENIC
2L	8363698	2L_8363698_SNP [dm3] 2L_8363698_SNP [dm6]	T	A	4.228e^-4	0.924	UTR_3_PRIME RpS13 DOWNSTREAM RpS13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_sens
3L	13129587	3L_13129587_SNP [dm3] 3L_13136487_SNP [dm6]	G	T	4.230e^-4	0.924	SYNONYMOUS_CODING CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11418476	2L_11418476_SNP [dm3] 2L_11418476_SNP [dm6]	T	A	4.237e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7378129	2L_7378129_SNP [dm3] 2L_7378129_SNP [dm6]	G	A	4.241e^-4	0.924	DOWNSTREAM Wnt10 INTRON ninaC
3R	13310662	3R_13310662_SNP [dm3] 3R_17484940_SNP [dm6]	G	A	4.244e^-4	0.924	INTRON Dscam3
X	9009477	X_9009477_SNP [dm3] X_9115444_SNP [dm6]	G	C	4.244e^-4	0.924	SYNONYMOUS_CODING AP-1gamma
3L	6449187	3L_6449187_SNP [dm3] 3L_6456087_SNP [dm6]	T	C	4.258e^-4	0.924	INTRON CG42747
X	5911083	X_5911083_DEL [dm3] X_6017050_DEL [dm6]	ACCGCATCCA	A	4.270e^-4	0.924	INTERGENIC
3L	10300552	3L_10300552_SNP [dm3] 3L_10307452_SNP [dm6]	A	T	4.272e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5303016	3R_5303016_SNP [dm3] 3R_9477294_SNP [dm6]	C	T	4.288e^-4	0.924	INTRON CG16779
2R	8556533	2R_8556533_SNP [dm3] 2R_12669028_SNP [dm6]	C	G	4.289e^-4	0.924	INTRON nemy
X	8433502	X_8433502_SNP [dm3] X_8539469_SNP [dm6]	A	C	4.290e^-4	0.924	INTRON Nrg
2L	17262569	2L_17262569_SNP [dm3] 2L_17262569_SNP [dm6]	A	G	4.293e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	10692944	3R_10692944_SNP [dm3] 3R_14867222_SNP [dm6]	A	T	4.301e^-4	0.924	INTRON btsz
2R	17145100	2R_17145100_SNP [dm3] 2R_21257595_SNP [dm6]	A	C	4.309e^-4	0.924	UTR_5_PRIME Rgk3 INTRON Rgk3
2R	11075567	2R_11075567_SNP [dm3] 2R_15188062_SNP [dm6]	T	A	4.314e^-4	0.924	INTRON igl
3R	13053780	3R_13053780_SNP [dm3] 3R_17228058_SNP [dm6]	T	G	4.315e^-4	0.924	INTERGENIC
2R	20021194	2R_20021194_SNP [dm3] 2R_24133671_SNP [dm6]	C	A	4.316e^-4	0.924	UPSTREAM Zfrp8 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	16434148	X_16434148_SNP [dm3] X_16540115_SNP [dm6]	A	C	4.331e^-4	0.924	NON_SYNONYMOUS_CODING CG9903	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11236072	2L_11236072_SNP [dm3] 2L_11236072_SNP [dm6]	G	T	4.333e^-4	0.924	SPLICE_SITE_REGION ab INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5378281	3L_5378281_SNP [dm3] 3L_5385181_SNP [dm6]	C	T	4.336e^-4	0.924	INTERGENIC
X	13221422	X_13221422_SNP [dm3] X_13327389_SNP [dm6]	G	A	4.342e^-4	0.924	SYNONYMOUS_CODING IP3K2
X	14419962	X_14419962_SNP [dm3] X_14525929_SNP [dm6]	A	C	4.345e^-4	0.924	INTERGENIC
3R	13053868	3R_13053868_INS [dm3] 3R_17228146_INS [dm6]	A	TTT	4.351e^-4	0.924	INTERGENIC
2R	4514753	2R_4514753_SNP [dm3] 2R_8627248_SNP [dm6]	G	A	4.353e^-4	0.924	SYNONYMOUS_CODING beta3GalTII UPSTREAM CG14749	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2224192	X_2224192_SNP [dm3] X_2330159_SNP [dm6]	A	C	4.353e^-4	0.924	INTRON phl EXON CR33218
2L	12619222	2L_12619222_SNP [dm3] 2L_12619222_SNP [dm6]	C	A	4.354e^-4	0.924	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	1881060	2L_1881060_SNP [dm3] 2L_1881060_SNP [dm6]	T	A	4.370e^-4	0.924	UPSTREAM CG31663 INTRON CG31663
3L	18115780	3L_18115780_DEL [dm3] 3L_18122680_DEL [dm6]	CAATTTATGTTTTTGAAAAT...	C	4.372e^-4	0.924	UPSTREAM CG42853 INTERGENIC
3R	17660946	3R_17660946_SNP [dm3] 3R_21835224_SNP [dm6]	T	G	4.380e^-4	0.924	INTERGENIC
2L	15811422	2L_15811422_SNP [dm3] 2L_15811422_SNP [dm6]	A	G	4.381e^-4	0.924	SYNONYMOUS_CODING CG42876	TF binding site BDTNP1_TFBS_da
3L	9002320	3L_9002320_SNP [dm3] 3L_9009220_SNP [dm6]	C	T	4.389e^-4	0.924	NON_SYNONYMOUS_CODING CG5194	TF binding site mE1_TFBS_cad
3R	18981909	3R_18981909_SNP [dm3] 3R_23156187_SNP [dm6]	A	G	4.392e^-4	0.924	SYNONYMOUS_CODING unk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	19232338	2R_19232338_SNP [dm3] 2R_23344815_SNP [dm6]	G	A	4.399e^-4	0.924	SYNONYMOUS_CODING CG3502
X	2378643	X_2378643_SNP [dm3] X_2484610_SNP [dm6]	T	A	4.405e^-4	0.924	SPLICE_SITE_REGION trol INTRON trol
3L	12562244	3L_12562244_SNP [dm3] 3L_12569144_SNP [dm6]	A	G	4.428e^-4	0.924	INTRON sowah	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	4673741	3R_4673741_SNP [dm3] 3R_8848019_SNP [dm6]	G	A	4.439e^-4	0.924	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19059213	3R_19059213_SNP [dm3] 3R_23233491_SNP [dm6]	A	G	4.448e^-4	0.924	INTRON CG4467	TF binding site mE1_TFBS_cad
X	9025135	X_9025135_SNP [dm3] X_9131102_SNP [dm6]	T	C	4.458e^-4	0.924	INTRON fend	TF binding site BDTNP1_TFBS_dl
2L	2698962	2L_2698962_SNP [dm3] 2L_2698962_SNP [dm6]	T	C	4.460e^-4	0.924	INTRON CG31690
3L	10228883	3L_10228883_SNP [dm3] 3L_10235783_SNP [dm6]	A	G	4.463e^-4	0.924	UPSTREAM CR44542 INTERGENIC
3R	7490646	3R_7490646_SNP [dm3] 3R_11664924_SNP [dm6]	C	T	4.467e^-4	0.924	INTRON CG42327
X	2546072	X_2546072_SNP [dm3] X_2652039_SNP [dm6]	A	G	4.469e^-4	0.924	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	21888860	X_21888860_SNP [dm3] X_22487024_SNP [dm6]	T	A	4.480e^-4	0.924	UPSTREAM l_1_G0196 DOWNSTREAM Cp110 & 1 other INTRON Cp110
X	21886990	X_21886990_DEL [dm3] X_22485154_DEL [dm6]	AA	A	4.485e^-4	0.924	INTRON Cp110
X	2471489	X_2471489_SNP [dm3] X_2577456_SNP [dm6]	T	C	4.502e^-4	0.924	DOWNSTREAM Pdfr INTRON Pdfr	TF binding site BDTNP1_TFBS_dl
3L	9005383	3L_9005383_SNP [dm3] 3L_9012283_SNP [dm6]	C	T	4.510e^-4	0.924	DOWNSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11423213	2L_11423213_SNP [dm3] 2L_11423213_SNP [dm6]	A	C	4.513e^-4	0.924	INTERGENIC
2L	9486710	2L_9486710_SNP [dm3] 2L_9486710_SNP [dm6]	C	T	4.525e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	2665592	2R_2665592_SNP [dm3] 2R_6778087_SNP [dm6]	G	C	4.526e^-4	0.924	INTRON Epac	TF binding site mE1_TFBS_cad
3L	3784507	3L_3784507_SNP [dm3] 3L_3784507_SNP [dm6]	A	C	4.531e^-4	0.924	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8854254	2R_8854254_SNP [dm3] 2R_12966749_SNP [dm6]	C	T	4.531e^-4	0.924	SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3576606	2R_3576606_SNP [dm3] 2R_7689101_SNP [dm6]	A	T	4.538e^-4	0.924	INTRON CG1399
3L	7176675	3L_7176675_DEL [dm3] 3L_7183575_DEL [dm6]	ATA	A	4.538e^-4	0.924	INTRON Dscam2
X	16436557	X_16436557_SNP [dm3] X_16542524_SNP [dm6]	T	G	4.542e^-4	0.924	UTR_3_PRIME CG9902
X	16724492	X_16724492_INS [dm3] X_16830459_INS [dm6]	T	TATTT	4.544e^-4	0.924	INTRON CG13004	TF binding site BDTNP1_TFBS_twi
2R	2639199	2R_2639199_SNP [dm3] 2R_6751694_SNP [dm6]	C	T	4.545e^-4	0.924	START_GAINED Eb1 UTR_5_PRIME Eb1 UPSTREAM Eb1 INTRON Eb1	TF binding site mE1_TFBS_sens
3R	7889385	3R_7889385_SNP [dm3] 3R_12063663_SNP [dm6]	T	A	4.560e^-4	0.924	UPSTREAM CG14740 INTERGENIC
3R	6457170	3R_6457170_SNP [dm3] 3R_10631448_SNP [dm6]	A	G	4.567e^-4	0.924	INTRON hth	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12973402	2L_12973402_SNP [dm3] 2L_12973402_SNP [dm6]	C	A	4.568e^-4	0.924	UPSTREAM Vha68-2 INTERGENIC
2R	6995721	2R_6995721_SNP [dm3] 2R_11108216_SNP [dm6]	T	A	4.577e^-4	0.924	INTRON luna	TF binding site mE1_TFBS_Trl
X	2545618	X_2545618_SNP [dm3] X_2651585_SNP [dm6]	T	C	4.580e^-4	0.924	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9742820	3L_9742820_SNP [dm3] 3L_9749720_SNP [dm6]	C	T	4.584e^-4	0.924	SYNONYMOUS_CODING CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18882719	3L_18882719_SNP [dm3] 3L_18889619_SNP [dm6]	C	A	4.586e^-4	0.924	INTRON CG3961	TF binding site BDTNP1_TFBS_dl
2L	14043726	2L_14043726_SNP [dm3] 2L_14043726_SNP [dm6]	T	C	4.599e^-4	0.924	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5079148	2L_5079148_SNP [dm3] 2L_5079148_SNP [dm6]	G	T	4.599e^-4	0.924	UTR_5_PRIME pgant5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	17048404	X_17048404_SNP [dm3] X_17154371_SNP [dm6]	G	A	4.606e^-4	0.924	UTR_3_PRIME xmas-2 INTRON xmas-1
2R	18560357	2R_18560357_SNP [dm3] 2R_22672852_SNP [dm6]	A	G	4.609e^-4	0.924	UTR_3_PRIME RYBP DOWNSTREAM CR44761	TF binding site mE1_TFBS_HSA
2R	11302130	2R_11302130_SNP [dm3] 2R_15414625_SNP [dm6]	A	T	4.612e^-4	0.924	INTRON CG43729
2L	11423683	2L_11423683_SNP [dm3] 2L_11423683_SNP [dm6]	A	G	4.613e^-4	0.924	INTERGENIC
2L	11435325	2L_11435325_SNP [dm3] 2L_11435325_SNP [dm6]	T	A	4.623e^-4	0.924	UTR_3_PRIME salm
2L	4741163	2L_4741163_SNP [dm3] 2L_4741163_SNP [dm6]	A	C	4.629e^-4	0.924	INTRON CG15630
3R	6457168	3R_6457168_SNP [dm3] 3R_10631446_SNP [dm6]	G	A	4.630e^-4	0.924	INTRON hth	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6457413	3R_6457413_SNP [dm3] 3R_10631691_SNP [dm6]	G	A	4.636e^-4	0.924	INTRON hth	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9546943	3L_9546943_SNP [dm3] 3L_9553843_SNP [dm6]	G	A	4.656e^-4	0.924	INTRON CG42673
3R	4874166	3R_4874166_SNP [dm3] 3R_9048444_SNP [dm6]	T	A	4.659e^-4	0.924	UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10019843	3L_10019843_SNP [dm3] 3L_10026743_SNP [dm6]	G	A	4.669e^-4	0.924	INTRON dpr6
2R	4222081	2R_4222081_SNP [dm3] 2R_8334576_SNP [dm6]	G	T	4.673e^-4	0.924	INTRON pdm3
2R	17474783	2R_17474783_SNP [dm3] 2R_21587278_SNP [dm6]	A	T	4.673e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2602196	3L_2602196_SNP [dm3] 3L_2602196_SNP [dm6]	T	C	4.680e^-4	0.924	NON_SYNONYMOUS_CODING Pxn DOWNSTREAM CG16986	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	8402865	X_8402865_SNP [dm3] X_8508832_SNP [dm6]	A	C	4.691e^-4	0.924	UPSTREAM CG33181 INTRON CG33181
3L	15700283	3L_15700283_SNP [dm3] 3L_15707183_SNP [dm6]	G	T	4.692e^-4	0.924	INTERGENIC
2L	15273637	2L_15273637_SNP [dm3] 2L_15273637_SNP [dm6]	A	G	4.696e^-4	0.924	DOWNSTREAM UK114 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14013315	2L_14013315_SNP [dm3] 2L_14013315_SNP [dm6]	T	A	4.700e^-4	0.924	UPSTREAM bgm INTRON bgm	TF binding site BDTNP1_TFBS_dl
3L	9547591	3L_9547591_SNP [dm3] 3L_9554491_SNP [dm6]	T	C	4.704e^-4	0.924	INTRON CG42673
3R	15442770	3R_15442770_SNP [dm3] 3R_19617048_SNP [dm6]	A	C	4.710e^-4	0.924	INTRON CG6231
X	6250455	X_6250455_INS [dm3] X_6356422_INS [dm6]	T	TT	4.714e^-4	0.924	INTRON kdn
2L	8551901	2L_8551901_SNP [dm3] 2L_8551901_SNP [dm6]	T	G	4.715e^-4	0.924	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
X	9009769	X_9009769_SNP [dm3] X_9115736_SNP [dm6]	T	A	4.720e^-4	0.924	INTRON AP-1gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20449365	X_20449365_SNP [dm3] X_20578338_SNP [dm6]	A	C	4.721e^-4	0.924	INTERGENIC
3L	15699620	3L_15699620_SNP [dm3] 3L_15706520_SNP [dm6]	C	T	4.738e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_sens
3L	15699843	3L_15699843_SNP [dm3] 3L_15706743_SNP [dm6]	G	A	4.738e^-4	0.924	INTERGENIC
3R	17486356	3R_17486356_SNP [dm3] 3R_21660634_SNP [dm6]	A	G	4.739e^-4	0.924	UTR_5_PRIME E2f UPSTREAM E2f DOWNSTREAM CG6353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16230647	X_16230647_SNP [dm3] X_16336614_SNP [dm6]	C	T	4.740e^-4	0.924	SYNONYMOUS_CODING Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11424266	2L_11424266_SNP [dm3] 2L_11424266_SNP [dm6]	T	A	4.742e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7908069	2R_7908069_SNP [dm3] 2R_12020564_SNP [dm6]	A	C	4.750e^-4	0.924	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
X	9656083	X_9656083_INS [dm3] X_9762050_INS [dm6]	A	AA	4.751e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	1686676	2L_1686676_SNP [dm3] 2L_1686676_SNP [dm6]	A	T	4.753e^-4	0.924	INTRON chinmo
3R	9016465	3R_9016465_SNP [dm3] 3R_13190743_SNP [dm6]	G	C	4.760e^-4	0.924	UPSTREAM CG8141 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16507040	3R_16507040_SNP [dm3] 3R_20681318_SNP [dm6]	G	A	4.772e^-4	0.924	INTERGENIC
2R	10946223	2R_10946223_SNP [dm3] 2R_15058718_SNP [dm6]	A	C	4.773e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8937902	2R_8937902_SNP [dm3] 2R_13050397_SNP [dm6]	C	T	4.776e^-4	0.924	UPSTREAM CG13324 INTERGENIC
2L	18338821	2L_18338821_SNP [dm3] 2L_18338821_SNP [dm6]	C	G	4.782e^-4	0.924	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22294984	3R_22294984_DEL [dm3] 3R_26469262_DEL [dm6]	TG	T	4.785e^-4	0.924	DOWNSTREAM plum INTRON CG5455
3L	1503887	3L_1503887_SNP [dm3] 3L_1503887_SNP [dm6]	C	T	4.789e^-4	0.924	SYNONYMOUS_CODING cue INTRON Psa	TF binding site mE1_TFBS_cad
2L	8371525	2L_8371525_INS [dm3] 2L_8371525_INS [dm6]	A	ATGGGCCTCAAAAA...	4.795e^-4	0.924	UPSTREAM CR45341 & 1 other INTRON CG17292
3R	16234576	3R_16234576_SNP [dm3] 3R_20408854_SNP [dm6]	C	T	4.802e^-4	0.924	SYNONYMOUS_CODING CG10881 UPSTREAM CG4335 INTRON Gfrl
3R	22113077	3R_22113077_SNP [dm3] 3R_26287355_SNP [dm6]	G	A	4.817e^-4	0.924	INTERGENIC
3R	24784396	3R_24784396_SNP [dm3] 3R_28958674_SNP [dm6]	A	C	4.822e^-4	0.924	INTRON CG14521	TF binding site mE1_TFBS_chinmo
X	4107032	X_4107032_SNP [dm3] X_4212999_SNP [dm6]	G	A	4.825e^-4	0.924	UPSTREAM CG43288 INTERGENIC
2L	16198448	2L_16198448_SNP [dm3] 2L_16198448_SNP [dm6]	T	A	4.829e^-4	0.924	INTERGENIC
2L	16198450	2L_16198450_SNP [dm3] 2L_16198450_SNP [dm6]	C	A	4.829e^-4	0.924	INTERGENIC
3L	7485621	3L_7485621_SNP [dm3] 3L_7492521_SNP [dm6]	T	A	4.838e^-4	0.924	INTRON Cyp316a1
2R	14883286	2R_14883286_DEL [dm3] 2R_18995781_DEL [dm6]	ATAGGCTTGA	A	4.848e^-4	0.924	DOWNSTREAM snoRNA:abba-a INTRON tn
3L	4353616	3L_4353616_SNP [dm3] 3L_4353616_SNP [dm6]	A	C	4.855e^-4	0.924	INTRON Cip4
3R	9016474	3R_9016474_SNP [dm3] 3R_13190752_SNP [dm6]	T	C	4.864e^-4	0.924	UPSTREAM CG8141 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9826177	2R_9826177_SNP [dm3] 2R_13938672_SNP [dm6]	G	A	4.867e^-4	0.924	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
X	6780849	X_6780849_SNP [dm3] X_6886816_SNP [dm6]	G	T	4.879e^-4	0.924	INTERGENIC
2L	22009684	2L_22009684_SNP [dm3] 2L_22009684_SNP [dm6]	T	A	4.883e^-4	0.924	INTERGENIC	transposable element FlyBase
X	5004859	X_5004859_SNP [dm3] X_5110826_SNP [dm6]	A	T	4.893e^-4	0.924	INTRON rg & 1 other
2R	20200774	2R_20200774_SNP [dm3] 2R_24313251_SNP [dm6]	C	A	4.895e^-4	0.924	DOWNSTREAM betaTub60D INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18795171	3R_18795171_SNP [dm3] 3R_22969449_SNP [dm6]	G	A	4.898e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	3790169	X_3790169_SNP [dm3] X_3896136_SNP [dm6]	C	G	4.907e^-4	0.924	NON_SYNONYMOUS_CODING CG42541	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12093853	2L_12093853_SNP [dm3] 2L_12093853_SNP [dm6]	A	C	4.907e^-4	0.924	UTR_5_PRIME Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	4146277	3L_4146277_SNP [dm3] 3L_4146277_SNP [dm6]	C	A	4.926e^-4	0.924	DOWNSTREAM CG32260 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15139025	2L_15139025_DEL [dm3] 2L_15139025_DEL [dm6]	CTCATAATGATG...	C	4.930e^-4	0.924	INTERGENIC
2L	11980007	2L_11980007_SNP [dm3] 2L_11980007_SNP [dm6]	C	T	4.932e^-4	0.924	INTERGENIC
X	4448661	X_4448661_DEL [dm3] X_4554628_DEL [dm6]	GC	G	4.932e^-4	0.924	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7008484	X_7008484_SNP [dm3] X_7114451_SNP [dm6]	T	A	4.932e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6998802	2R_6998802_SNP [dm3] 2R_11111297_SNP [dm6]	A	C	4.934e^-4	0.924	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20030054	2R_20030054_SNP [dm3] 2R_24142531_SNP [dm6]	A	G	4.935e^-4	0.924	INTRON Dat
3R	6922039	3R_6922039_SNP [dm3] 3R_11096317_SNP [dm6]	A	G	4.938e^-4	0.924	INTERGENIC
2R	5635181	2R_5635181_SNP [dm3] 2R_9747676_SNP [dm6]	G	T	4.946e^-4	0.924	UTR_5_PRIME sqa
X	6887095	X_6887095_SNP [dm3] X_6993062_SNP [dm6]	A	G	4.946e^-4	0.924	INTRON Inx7
2R	3072696	2R_3072696_SNP [dm3] 2R_7185191_SNP [dm6]	C	T	4.946e^-4	0.924	UTR_3_PRIME CG30384 INTRON pk	TF binding site mE1_TFBS_chinmo
X	14670523	X_14670523_SNP [dm3] X_14776490_SNP [dm6]	A	G	4.948e^-4	0.924	UPSTREAM CG5347 DOWNSTREAM CG5334 INTERGENIC
2R	19253856	2R_19253856_SNP [dm3] 2R_23366333_SNP [dm6]	G	A	4.950e^-4	0.924	UTR_5_PRIME vir UPSTREAM Ice1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8399615	2L_8399615_SNP [dm3] 2L_8399615_SNP [dm6]	T	C	4.951e^-4	0.924	SYNONYMOUS_CODING CG13386 UPSTREAM CG31898	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13364021	3R_13364021_SNP [dm3] 3R_17538299_SNP [dm6]	A	G	4.953e^-4	0.924	NON_SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
2L	11411561	2L_11411561_SNP [dm3] 2L_11411561_SNP [dm6]	C	T	4.954e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs
2L	8372861	2L_8372861_SNP [dm3] 2L_8372861_SNP [dm6]	G	T	4.959e^-4	0.924	INTRON CG17292	TF binding site mE1_TFBS_HSA
3R	11095870	3R_11095870_SNP [dm3] 3R_15270148_SNP [dm6]	T	C	4.959e^-4	0.924	DOWNSTREAM Cp190 INTRON Zip88E	TF binding site mE1_TFBS_HSA
3L	8151198	3L_8151198_SNP [dm3] 3L_8158098_SNP [dm6]	G	A	4.960e^-4	0.924	INTRON CG42445
3R	8934173	3R_8934173_SNP [dm3] 3R_13108451_SNP [dm6]	A	G	4.965e^-4	0.924	INTRON timeout
X	11390441	X_11390441_SNP [dm3] X_11496408_SNP [dm6]	C	T	4.970e^-4	0.924	INTRON Drak	TF binding site BDTNP1_TFBS_dl
3R	25968189	3R_25968189_SNP [dm3] 3R_30142467_SNP [dm6]	A	T	4.975e^-4	0.924	INTRON AdoR
2R	15033783	2R_15033783_SNP [dm3] 2R_19146278_SNP [dm6]	C	T	4.978e^-4	0.924	DOWNSTREAM CR43399 INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7638452	2R_7638452_SNP [dm3] 2R_11750947_SNP [dm6]	A	G	4.978e^-4	0.924	INTERGENIC
3L	10293945	3L_10293945_SNP [dm3] 3L_10300845_SNP [dm6]	T	A	4.978e^-4	0.924	INTERGENIC
X	4448664	X_4448664_SNP [dm3] X_4554631_SNP [dm6]	C	T	4.979e^-4	0.924	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8915472	3L_8915472_SNP [dm3] 3L_8922372_SNP [dm6]	A	T	4.983e^-4	0.924	INTRON Tsp66E
2R	16774240	2R_16774240_SNP [dm3] 2R_20886735_SNP [dm6]	G	A	4.983e^-4	0.924	SPLICE_SITE_REGION otp INTRON otp
X	13164885	X_13164885_SNP [dm3] X_13270852_SNP [dm6]	G	A	4.985e^-4	0.924	INTRON HDAC4
2L	16814383	2L_16814383_SNP [dm3] 2L_16814383_SNP [dm6]	A	C	4.991e^-4	0.924	SYNONYMOUS_CODING CG13272 INTRON CG13280	TF binding site mE1_TFBS_sens
3R	26488840	3R_26488840_SNP [dm3] 3R_30663118_SNP [dm6]	G	A	4.996e^-4	0.924	INTERGENIC
2R	4206384	2R_4206384_SNP [dm3] 2R_8318879_SNP [dm6]	A	G	4.998e^-4	0.924	INTERGENIC
2L	9427439	2L_9427439_SNP [dm3] 2L_9427439_SNP [dm6]	T	G	5.024e^-4	0.924	NON_SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847
2L	15100132	2L_15100132_SNP [dm3] 2L_15100132_SNP [dm6]	G	A	5.029e^-4	0.924	INTERGENIC
3R	16233809	3R_16233809_SNP [dm3] 3R_20408087_SNP [dm6]	A	T	5.033e^-4	0.924	UPSTREAM CG10881 & 1 other INTRON Gfrl
2L	5566729	2L_5566729_SNP [dm3] 2L_5566729_SNP [dm6]	A	G	5.036e^-4	0.924	UPSTREAM CR44794 DOWNSTREAM snRNA:U4:25F INTERGENIC
3L	12379029	3L_12379029_SNP [dm3] 3L_12385929_SNP [dm6]	C	A	5.039e^-4	0.924	INTRON Ncc69
2R	19314593	2R_19314593_INS [dm3] 2R_23427070_INS [dm6]	T	TT	5.044e^-4	0.924	INTRON CG9815	TF binding site BDTNP1_TFBS_dl
2R	3072713	2R_3072713_SNP [dm3] 2R_7185208_SNP [dm6]	T	C	5.046e^-4	0.924	UTR_3_PRIME CG30384 INTRON pk	TF binding site mE1_TFBS_chinmo
3L	14647532	3L_14647532_SNP [dm3] 3L_14654432_SNP [dm6]	A	T	5.048e^-4	0.924	INTRON dlp
3R	12512612	3R_12512612_SNP [dm3] 3R_16686890_SNP [dm6]	A	T	5.050e^-4	0.924	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13041934	3L_13041934_SNP [dm3] 3L_13048834_SNP [dm6]	C	T	5.054e^-4	0.924	UTR_3_PRIME CG11279 DOWNSTREAM CG11279	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	6854684	3R_6854684_SNP [dm3] 3R_11028962_SNP [dm6]	T	C	5.083e^-4	0.924	INTRON CG34114
3R	20629936	3R_20629936_SNP [dm3] 3R_24804214_SNP [dm6]	A	T	5.086e^-4	0.924	INTRON polybromo	TF binding site mE1_TFBS_HSA
2R	8308950	2R_8308950_SNP [dm3] 2R_12421445_SNP [dm6]	G	A	5.092e^-4	0.924	SYNONYMOUS_CODING CG8834	TF binding site mE1_TFBS_cad
X	8690979	X_8690979_DEL [dm3] X_8796946_DEL [dm6]	CA	C	5.095e^-4	0.924	INTRON Lim1
3L	12418526	3L_12418526_SNP [dm3] 3L_12425426_SNP [dm6]	C	T	5.102e^-4	0.924	SYNONYMOUS_CODING toe	TF binding site mE1_TFBS_cad
3R	10871002	3R_10871002_SNP [dm3] 3R_15045280_SNP [dm6]	C	T	5.108e^-4	0.924	INTERGENIC
2L	11390749	2L_11390749_SNP [dm3] 2L_11390749_SNP [dm6]	C	A	5.109e^-4	0.924	INTRON CR43681 EXON CR43681	regulatory region REDfly_CRMs
2R	17001269	2R_17001269_SNP [dm3] 2R_21113764_SNP [dm6]	T	C	5.117e^-4	0.924	INTRON ktub
2L	13541077	2L_13541077_SNP [dm3] 2L_13541077_SNP [dm6]	T	C	5.117e^-4	0.924	DOWNSTREAM CG9263 INTRON B4 & 1 other	TF binding site mE1_TFBS_HSA
2R	11096103	2R_11096103_SNP [dm3] 2R_15208598_SNP [dm6]	T	C	5.120e^-4	0.924	SYNONYMOUS_CODING Ir51b INTRON row	TF binding site mE1_TFBS_sens
2R	16431980	2R_16431980_INS [dm3] 2R_20544475_INS [dm6]	A	AA	5.121e^-4	0.924	INTERGENIC
2R	16915602	2R_16915602_SNP [dm3] 2R_21028097_SNP [dm6]	C	T	5.137e^-4	0.924	INTERGENIC
2R	16115926	2R_16115926_SNP [dm3] 2R_20228421_SNP [dm6]	T	G	5.140e^-4	0.924	INTERGENIC
3R	6730104	3R_6730104_SNP [dm3] 3R_10904382_SNP [dm6]	C	T	5.150e^-4	0.924	INTERGENIC
2L	3669067	2L_3669067_SNP [dm3] 2L_3669067_SNP [dm6]	A	G	5.153e^-4	0.924	SYNONYMOUS_CODING CG42463 UPSTREAM Sfp24Ba DOWNSTREAM Sfp24Bb INTRON CG34340
2R	18020071	2R_18020071_SNP [dm3] 2R_22132566_SNP [dm6]	A	G	5.164e^-4	0.924	INTERGENIC
3L	4792435	3L_4792435_SNP [dm3] 3L_4792435_SNP [dm6]	C	T	5.173e^-4	0.924	SYNONYMOUS_CODING RhoGEF64C	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
X	1192425	X_1192425_SNP [dm3] X_1298392_SNP [dm6]	T	A	5.179e^-4	0.924	UPSTREAM CG32811 INTRON DAAM
2L	960228	2L_960228_SNP [dm3] 2L_960228_SNP [dm6]	C	T	5.182e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23917626	3R_23917626_INS [dm3] 3R_28091904_INS [dm6]	A	AT	5.182e^-4	0.924	INTERGENIC
X	15617132	X_15617132_SNP [dm3] X_15723099_SNP [dm6]	A	G	5.183e^-4	0.924	SYNONYMOUS_CODING CG8184 INTRON CG8184	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15498295	X_15498295_DEL [dm3] X_15604262_DEL [dm6]	CTGTTTTTT	C	5.185e^-4	0.924	UTR_3_PRIME sog DOWNSTREAM sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10037179	2L_10037179_SNP [dm3] 2L_10037179_SNP [dm6]	G	A	5.186e^-4	0.924	SYNONYMOUS_CODING obst-B
3R	17754848	3R_17754848_INS [dm3] 3R_21929126_INS [dm6]	T	TT	5.187e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	15145862	2R_15145862_SNP [dm3] 2R_19258357_SNP [dm6]	A	G	5.188e^-4	0.924	DOWNSTREAM CR44432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens

Missing results

By genomic position
Variant impact
Gene name

Cuticul_5_Me_C25 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results