DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.553e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.05057

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	8.8714	0.0118

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1815 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	8314568	3L_8314568_SNP [dm3] 3L_8321468_SNP [dm6]	A	G	4.091e^-7	0.767	INTRON CG13670	TF binding site mE1_TFBS_cad
3L	8314503	3L_8314503_SNP [dm3] 3L_8321403_SNP [dm6]	A	T	3.456e^-6	0.979	INTRON CG13670	TF binding site mE1_TFBS_cad
X	10078498	X_10078498_SNP [dm3] X_10184465_SNP [dm6]	A	G	3.948e^-6	0.979	INTRON CG43902 & 1 other
3L	10571829	3L_10571829_DEL [dm3] 3L_10578729_DEL [dm6]	GG	A	5.512e^-6	0.979	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21337061	3R_21337061_SNP [dm3] 3R_25511339_SNP [dm6]	A	T	6.299e^-6	0.979	INTERGENIC
3L	10571834	3L_10571834_SNP [dm3] 3L_10578734_SNP [dm6]	A	G	8.030e^-6	0.979	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18882553	3L_18882553_SNP [dm3] 3L_18889453_SNP [dm6]	T	C	9.657e^-6	0.979	INTRON CG3961
3R	11580407	3R_11580407_SNP [dm3] 3R_15754685_SNP [dm6]	A	G	9.888e^-6	0.979	INTERGENIC
2R	18474107	2R_18474107_SNP [dm3] 2R_22586602_SNP [dm6]	G	T	1.047e^-5	0.979	INTRON dnr1
X	13221413	X_13221413_SNP [dm3] X_13327380_SNP [dm6]	T	C	1.063e^-5	0.979	SYNONYMOUS_CODING IP3K2
3L	7889244	3L_7889244_DEL [dm3] 3L_7896144_DEL [dm6]	TATTAACTTAAACATCTTCA...	T	1.651e^-5	0.979	UTR_3_PRIME pbl DOWNSTREAM eIF4E-5
X	19301615	X_19301615_SNP [dm3] X_19407582_SNP [dm6]	A	C	1.685e^-5	0.979	INTRON kek5
3L	18889880	3L_18889880_SNP [dm3] 3L_18896780_SNP [dm6]	C	T	1.802e^-5	0.979	UPSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10695016	3L_10695016_SNP [dm3] 3L_10701916_SNP [dm6]	G	A	2.007e^-5	0.979	INTERGENIC
3L	10695012	3L_10695012_SNP [dm3] 3L_10701912_SNP [dm6]	G	T	2.019e^-5	0.979	INTERGENIC
X	2244201	X_2244201_SNP [dm3] X_2350168_SNP [dm6]	C	A	2.087e^-5	0.979	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7889240	3L_7889240_SNP [dm3] 3L_7896140_SNP [dm6]	C	T	2.115e^-5	0.979	UTR_3_PRIME pbl DOWNSTREAM eIF4E-5
3L	18560093	3L_18560093_SNP [dm3] 3L_18566993_SNP [dm6]	T	A	2.192e^-5	0.979	INTRON AstC-R1
3L	10292364	3L_10292364_SNP [dm3] 3L_10299264_SNP [dm6]	G	A	2.342e^-5	0.979	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12231602	2L_12231602_SNP [dm3] 2L_12231602_SNP [dm6]	G	T	2.450e^-5	0.979	INTRON aret
2R	8856210	2R_8856210_SNP [dm3] 2R_12968705_SNP [dm6]	G	T	2.515e^-5	0.979	SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21998515	3R_21998515_SNP [dm3] 3R_26172793_SNP [dm6]	A	G	2.683e^-5	0.979	INTRON CG31323
X	19301541	X_19301541_SNP [dm3] X_19407508_SNP [dm6]	T	C	2.706e^-5	0.979	INTRON kek5
3L	4163845	3L_4163845_SNP [dm3] 3L_4163845_SNP [dm6]	T	C	2.717e^-5	0.979	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1530819	2L_1530819_INS [dm3] 2L_1530819_INS [dm6]	T	TT	2.883e^-5	0.979	INTERGENIC
3L	7298516	3L_7298516_SNP [dm3] 3L_7305416_SNP [dm6]	T	C	3.184e^-5	0.979	INTRON unc-13-4A
3L	8314617	3L_8314617_SNP [dm3] 3L_8321517_SNP [dm6]	A	C	3.192e^-5	0.979	INTRON CG13670
2R	14318503	2R_14318503_SNP [dm3] 2R_18430998_SNP [dm6]	T	C	3.352e^-5	0.979	UTR_3_PRIME CG30118 DOWNSTREAM CG12263 INTRON CG30118
X	11392200	X_11392200_SNP [dm3] X_11498167_SNP [dm6]	T	G	3.375e^-5	0.979	INTRON Drak
3R	20877075	3R_20877075_SNP [dm3] 3R_25051353_SNP [dm6]	C	T	3.378e^-5	0.979	NON_SYNONYMOUS_CODING CG11791	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16071344	2R_16071344_SNP [dm3] 2R_20183839_SNP [dm6]	G	A	3.509e^-5	0.979	INTERGENIC
3R	13368067	3R_13368067_SNP [dm3] 3R_17542345_SNP [dm6]	A	G	3.696e^-5	0.979	INTRON SF1
2L	9624477	2L_9624477_SNP [dm3] 2L_9624477_SNP [dm6]	C	A	3.733e^-5	0.979	UTR_3_PRIME CG31882
X	12751137	X_12751137_SNP [dm3] X_12857104_SNP [dm6]	A	G	3.735e^-5	0.979	SYNONYMOUS_CODING CG4661 INTRON Pde9
2L	2809799	2L_2809799_SNP [dm3] 2L_2809799_SNP [dm6]	C	G	3.745e^-5	0.979	SYNONYMOUS_CODING daw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18914817	3L_18914817_SNP [dm3] 3L_18921717_SNP [dm6]	T	C	3.780e^-5	0.979	DOWNSTREAM CG32204 INTRON CG3819
X	15989787	X_15989787_SNP [dm3] X_16095754_SNP [dm6]	A	C	3.801e^-5	0.979	INTRON CG42354 & 1 other
X	5034832	X_5034832_SNP [dm3] X_5140799_SNP [dm6]	G	C	3.897e^-5	0.979	INTRON rg & 1 other	TF binding site mE1_TFBS_inv
2R	20588700	2R_20588700_SNP [dm3] 2R_24701177_SNP [dm6]	T	A	3.926e^-5	0.979	SYNONYMOUS_CODING Mid1
3L	18889911	3L_18889911_DEL [dm3] 3L_18896811_DEL [dm6]	GTAAATTATTATTATTATCA...	G	3.971e^-5	0.979	UPSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	11565934	X_11565934_SNP [dm3] X_11671901_SNP [dm6]	G	A	4.073e^-5	0.979	INTRON Ptp10D	TF binding site mE1_TFBS_cad
3L	18906963	3L_18906963_SNP [dm3] 3L_18913863_SNP [dm6]	T	C	4.212e^-5	0.979	NON_SYNONYMOUS_CODING CG14077
3L	12414308	3L_12414308_SNP [dm3] 3L_12421208_SNP [dm6]	T	G	4.277e^-5	0.979	INTERGENIC
3R	14529535	3R_14529535_SNP [dm3] 3R_18703813_SNP [dm6]	A	G	4.383e^-5	0.979	INTERGENIC
3R	3774604	3R_3774604_SNP [dm3] 3R_7948882_SNP [dm6]	G	A	4.468e^-5	0.979	INTRON dsx
X	4448661	X_4448661_DEL [dm3] X_4554628_DEL [dm6]	GC	G	4.514e^-5	0.979	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18882775	3L_18882775_SNP [dm3] 3L_18889675_SNP [dm6]	A	C	4.613e^-5	0.979	INTRON CG3961	TF binding site BDTNP1_TFBS_dl
X	8807753	X_8807753_SNP [dm3] X_8913720_SNP [dm6]	G	C	4.615e^-5	0.979	INTRON rdgA
X	18730754	X_18730754_SNP [dm3] X_18836721_SNP [dm6]	G	T	4.636e^-5	0.979	INTRON Pvf1
X	22108291	X_22108291_SNP [dm3] X_22706455_SNP [dm6]	T	A	4.704e^-5	0.979	INTRON CR44997
3R	7904600	3R_7904600_SNP [dm3] 3R_12078878_SNP [dm6]	A	T	4.734e^-5	0.979	INTRON CG14741	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	9092040	X_9092040_SNP [dm3] X_9198007_SNP [dm6]	C	T	5.027e^-5	0.979	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11089295	3R_11089295_SNP [dm3] 3R_15263573_SNP [dm6]	C	T	5.027e^-5	0.979	START_GAINED Set UTR_5_PRIME Set UPSTREAM eIF-2gamma & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	18913570	3L_18913570_SNP [dm3] 3L_18920470_SNP [dm6]	A	T	5.031e^-5	0.979	UTR_3_PRIME CG3819 UPSTREAM CG18223 DOWNSTREAM CG3819
3R	9679238	3R_9679238_SNP [dm3] 3R_13853516_SNP [dm6]	T	C	5.079e^-5	0.979	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12619135	2L_12619135_SNP [dm3] 2L_12619135_SNP [dm6]	T	C	5.132e^-5	0.979	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	1363400	3L_1363400_DEL [dm3] 3L_1363400_DEL [dm6]	GGGTG	G	5.141e^-5	0.979	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl
X	2769334	X_2769334_SNP [dm3] X_2875301_SNP [dm6]	T	A	5.146e^-5	0.979	DOWNSTREAM CG14417 INTRON kirre
2L	12254919	2L_12254919_SNP [dm3] 2L_12254919_SNP [dm6]	T	C	5.180e^-5	0.979	INTRON aret
3L	18882719	3L_18882719_SNP [dm3] 3L_18889619_SNP [dm6]	C	A	5.331e^-5	0.979	INTRON CG3961	TF binding site BDTNP1_TFBS_dl
X	4448664	X_4448664_SNP [dm3] X_4554631_SNP [dm6]	C	T	5.384e^-5	0.979	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18881979	3L_18881979_SNP [dm3] 3L_18888879_SNP [dm6]	A	T	5.450e^-5	0.979	INTRON CG3961
2L	4111492	2L_4111492_DEL [dm3] 2L_4111492_DEL [dm6]	GG	G	5.510e^-5	0.979	INTRON ed
3L	4160872	3L_4160872_SNP [dm3] 3L_4160872_SNP [dm6]	G	A	5.578e^-5	0.979	UTR_5_PRIME nab DOWNSTREAM mas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	13239228	3L_13239228_SNP [dm3] 3L_13246128_SNP [dm6]	A	G	5.627e^-5	0.979	DOWNSTREAM CG32119 INTRON caps
2L	2266078	2L_2266078_SNP [dm3] 2L_2266078_SNP [dm6]	A	T	5.648e^-5	0.979	UPSTREAM CG34049 INTERGENIC
3L	10695068	3L_10695068_SNP [dm3] 3L_10701968_SNP [dm6]	A	G	5.765e^-5	0.979	INTERGENIC
X	2245169	X_2245169_DEL [dm3] X_2351136_DEL [dm6]	TT	T	5.789e^-5	0.979	INTRON ptr
2R	12498356	2R_12498356_SNP [dm3] 2R_16610851_SNP [dm6]	A	G	5.835e^-5	0.979	INTRON CG5065
3L	18903040	3L_18903040_SNP [dm3] 3L_18909940_SNP [dm6]	G	A	6.033e^-5	0.979	INTRON Ir75d & 1 other
3L	4163863	3L_4163863_SNP [dm3] 3L_4163863_SNP [dm6]	C	T	6.345e^-5	0.979	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16246938	2L_16246938_DEL [dm3] 2L_16246938_DEL [dm6]	TAGTT	T	6.350e^-5	0.979	UTR_3_PRIME PRL-1
X	4954059	X_4954059_INS [dm3] X_5060026_INS [dm6]	G	GG	6.371e^-5	0.979	INTRON CR44833 & 1 other
3L	9806771	3L_9806771_SNP [dm3] 3L_9813671_SNP [dm6]	T	A	6.495e^-5	0.979	UPSTREAM CG43897 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	7776511	X_7776511_SNP [dm3] X_7882478_SNP [dm6]	C	G	6.562e^-5	0.979	NON_SYNONYMOUS_CODING Ir7f UPSTREAM Ir7e
3L	10741113	3L_10741113_SNP [dm3] 3L_10748013_SNP [dm6]	C	A	6.600e^-5	0.979	INTERGENIC
2R	2874740	2R_2874740_SNP [dm3] 2R_6987235_SNP [dm6]	T	A	6.653e^-5	0.979	INTRON CG17002	TF binding site mE1_TFBS_cad
3R	11580337	3R_11580337_SNP [dm3] 3R_15754615_SNP [dm6]	C	G	6.705e^-5	0.979	INTERGENIC
3L	10109271	3L_10109271_SNP [dm3] 3L_10116171_SNP [dm6]	A	G	6.733e^-5	0.979	INTRON dpr6
X	4539562	X_4539562_SNP [dm3] X_4645529_SNP [dm6]	C	A	6.738e^-5	0.979	UTR_3_PRIME HLH4C UPSTREAM CG3062	TF binding site mE1_TFBS_chinmo
3R	25499425	3R_25499425_SNP [dm3] 3R_29673703_SNP [dm6]	T	C	6.801e^-5	0.979	DOWNSTREAM Bub3 INTRON ppk19
X	22370049	X_22370049_SNP [dm3] X_22968213_SNP [dm6]	T	G	6.882e^-5	0.979	INTERGENIC
3L	10109277	3L_10109277_SNP [dm3] 3L_10116177_SNP [dm6]	G	C	6.891e^-5	0.979	INTRON dpr6
2R	18177092	2R_18177092_SNP [dm3] 2R_22289587_SNP [dm6]	G	T	6.967e^-5	0.979	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
X	5588315	X_5588315_SNP [dm3] X_5694282_SNP [dm6]	A	G	6.986e^-5	0.979	SYNONYMOUS_CODING CG3149	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	10404253	2R_10404253_SNP [dm3] 2R_14516748_SNP [dm6]	C	A	6.997e^-5	0.979	INTERGENIC
2R	9974008	2R_9974008_SNP [dm3] 2R_14086503_SNP [dm6]	G	A	7.010e^-5	0.979	INTRON Prosap
3R	12146903	3R_12146903_SNP [dm3] 3R_16321181_SNP [dm6]	G	A	7.022e^-5	0.979	UPSTREAM tRNA:F2:89BC & 2 others INTRON Sulf1
2L	1928454	2L_1928454_SNP [dm3] 2L_1928454_SNP [dm6]	C	T	7.043e^-5	0.979	UTR_5_PRIME CG7337 INTRON CG7337
3L	18914844	3L_18914844_SNP [dm3] 3L_18921744_SNP [dm6]	T	A	7.050e^-5	0.979	DOWNSTREAM CG32204 INTRON CG3819
X	22371736	X_22371736_SNP [dm3] X_22969900_SNP [dm6]	A	T	7.080e^-5	0.979	INTERGENIC	transposable element FlyBase
2L	4281093	2L_4281093_SNP [dm3] 2L_4281093_SNP [dm6]	A	T	7.103e^-5	0.979	INTRON Art2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7220390	3L_7220390_SNP [dm3] 3L_7227290_SNP [dm6]	A	T	7.242e^-5	0.979	INTERGENIC
X	2244180	X_2244180_SNP [dm3] X_2350147_SNP [dm6]	A	T	7.272e^-5	0.979	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2158923	2L_2158923_SNP [dm3] 2L_2158923_SNP [dm6]	A	G	7.498e^-5	0.979	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13081965	2R_13081965_SNP [dm3] 2R_17194460_SNP [dm6]	T	A	7.574e^-5	0.979	UPSTREAM CG10950 INTERGENIC
3L	13864106	3L_13864106_SNP [dm3] 3L_13871006_SNP [dm6]	T	C	7.597e^-5	0.979	UTR_3_PRIME dysc
3L	15696722	3L_15696722_SNP [dm3] 3L_15703622_SNP [dm6]	T	C	7.619e^-5	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12086776	3R_12086776_SNP [dm3] 3R_16261054_SNP [dm6]	G	A	7.709e^-5	0.979	DOWNSTREAM tara & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	7229494	3R_7229494_SNP [dm3] 3R_11403772_SNP [dm6]	T	C	7.751e^-5	0.979	UTR_3_PRIME pros
X	17585530	X_17585530_SNP [dm3] X_17691497_SNP [dm6]	A	G	7.826e^-5	0.979	INTRON chas
X	2244802	X_2244802_INS [dm3] X_2350769_INS [dm6]	A	AA	7.850e^-5	0.979	UPSTREAM ptr INTRON ptr
3R	9798364	3R_9798364_INS [dm3] 3R_13972642_INS [dm6]	T	TGTAGTGTGAGTGTGT...	7.901e^-5	0.979	UPSTREAM rdx DOWNSTREAM CR43460 INTRON rdx & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8723018	X_8723018_INS [dm3] X_8828985_INS [dm6]	G	GG	8.116e^-5	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9053415	3L_9053415_SNP [dm3] 3L_9060315_SNP [dm6]	C	G	8.176e^-5	0.979	INTRON Argk
3R	9952530	3R_9952530_SNP [dm3] 3R_14126808_SNP [dm6]	G	A	8.306e^-5	0.979	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15273637	2L_15273637_SNP [dm3] 2L_15273637_SNP [dm6]	A	G	8.309e^-5	0.979	DOWNSTREAM UK114 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18915462	3L_18915462_SNP [dm3] 3L_18922362_SNP [dm6]	C	T	8.324e^-5	0.979	UPSTREAM CG3819 DOWNSTREAM CG32204 INTERGENIC
2R	17104405	2R_17104405_SNP [dm3] 2R_21216900_SNP [dm6]	T	C	8.483e^-5	0.979	SYNONYMOUS_CODING CG15661 DOWNSTREAM ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3950373	2L_3950373_SNP [dm3] 2L_3950373_SNP [dm6]	A	C	8.512e^-5	0.979	INTRON fred
2L	12619158	2L_12619158_SNP [dm3] 2L_12619158_SNP [dm6]	A	G	8.650e^-5	0.979	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	18888828	3L_18888828_SNP [dm3] 3L_18895728_SNP [dm6]	G	T	8.728e^-5	0.979	DOWNSTREAM snoRNA:Psi28S-2566 INTRON CG3902
3R	25499445	3R_25499445_DEL [dm3] 3R_29673723_DEL [dm6]	TTTTT	CTCC	8.829e^-5	0.979	SPLICE_SITE_REGION ppk19 DOWNSTREAM Bub3 INTRON ppk19
2L	1928231	2L_1928231_SNP [dm3] 2L_1928231_SNP [dm6]	A	G	8.872e^-5	0.979	UTR_5_PRIME CG7337 INTRON CG7337
2L	7167518	2L_7167518_DEL [dm3] 2L_7167518_DEL [dm6]	GG	G	8.938e^-5	0.979	INTERGENIC
X	9490721	X_9490721_DEL [dm3] X_9596688_DEL [dm6]	GTAGTAAG	G	9.048e^-5	0.979	INTERGENIC
2L	3268248	2L_3268248_SNP [dm3] 2L_3268248_SNP [dm6]	C	T	9.065e^-5	0.979	UPSTREAM CR44484 INTERGENIC
3R	20961201	3R_20961201_DEL [dm3] 3R_25135479_DEL [dm6]	TCT	T	9.092e^-5	0.979	INTRON Bili
2L	4104996	2L_4104996_SNP [dm3] 2L_4104996_SNP [dm6]	A	G	9.181e^-5	0.979	INTRON ed
3L	18835840	3L_18835840_SNP [dm3] 3L_18842740_SNP [dm6]	G	T	9.215e^-5	0.979	INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da
3R	11738137	3R_11738137_SNP [dm3] 3R_15912415_SNP [dm6]	G	A	9.320e^-5	0.979	SYNONYMOUS_CODING CG45105 UTR_3_PRIME CG45105 INTRON CG45105
3R	9906358	3R_9906358_SNP [dm3] 3R_14080636_SNP [dm6]	C	A	9.360e^-5	0.979	INTRON foxo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16902696	X_16902696_INS [dm3] X_17008663_INS [dm6]	C	CTC	9.535e^-5	0.979	INTRON CG45002
X	1843916	X_1843916_SNP [dm3] X_1949883_SNP [dm6]	T	G	9.625e^-5	0.979	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17585526	X_17585526_SNP [dm3] X_17691493_SNP [dm6]	T	A	9.633e^-5	0.979	INTRON chas
2L	2146312	2L_2146312_SNP [dm3] 2L_2146312_SNP [dm6]	A	G	9.763e^-5	0.979	NON_SYNONYMOUS_CODING CG11723	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	15471940	3L_15471940_SNP [dm3] 3L_15478840_SNP [dm6]	A	T	9.836e^-5	0.979	INTERGENIC
2R	7379626	2R_7379626_SNP [dm3] 2R_11492121_SNP [dm6]	G	A	1.004e^-4	0.979	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14190650	X_14190650_SNP [dm3] X_14296617_SNP [dm6]	C	T	1.008e^-4	0.979	INTERGENIC
2L	12254953	2L_12254953_SNP [dm3] 2L_12254953_SNP [dm6]	T	C	1.008e^-4	0.979	INTRON aret
3R	13152705	3R_13152705_SNP [dm3] 3R_17326983_SNP [dm6]	A	G	1.032e^-4	0.979	INTRON beat-IIa
2L	3154711	2L_3154711_SNP [dm3] 2L_3154711_SNP [dm6]	C	T	1.054e^-4	0.979	INTRON Mad
2R	7908126	2R_7908126_INS [dm3] 2R_12020621_INS [dm6]	A	AG	1.060e^-4	0.979	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
X	13720800	X_13720800_SNP [dm3] X_13826767_SNP [dm6]	G	A	1.062e^-4	0.979	DOWNSTREAM Nup93-1 INTRON jub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18882779	3L_18882779_SNP [dm3] 3L_18889679_SNP [dm6]	G	A	1.064e^-4	0.979	INTRON CG3961	TF binding site BDTNP1_TFBS_dl
3R	27043057	3R_27043057_SNP [dm3] 3R_31217335_SNP [dm6]	T	C	1.065e^-4	0.979	DOWNSTREAM RNaseP:RNA INTRON CG1746	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	848395	2L_848395_SNP [dm3] 2L_848395_SNP [dm6]	C	G	1.090e^-4	0.979	INTRON drongo	TF binding site mE1_TFBS_sens
2L	2266083	2L_2266083_SNP [dm3] 2L_2266083_SNP [dm6]	A	G	1.091e^-4	0.979	UPSTREAM CG34049 INTERGENIC
2L	8713221	2L_8713221_SNP [dm3] 2L_8713221_SNP [dm6]	T	G	1.095e^-4	0.979	INTRON raw
X	16990501	X_16990501_SNP [dm3] X_17096468_SNP [dm6]	G	A	1.096e^-4	0.979	SYNONYMOUS_CODING CG16700 INTRON CG4991	TF binding site mE1_TFBS_sens
3R	24482097	3R_24482097_SNP [dm3] 3R_28656375_SNP [dm6]	G	T	1.100e^-4	0.979	INTERGENIC
3R	26793188	3R_26793188_SNP [dm3] 3R_30967466_SNP [dm6]	G	A	1.118e^-4	0.979	DOWNSTREAM 5-HT7 INTERGENIC
X	8408285	X_8408285_SNP [dm3] X_8514252_SNP [dm6]	G	T	1.123e^-4	0.979	INTRON CG33181
X	7776518	X_7776518_SNP [dm3] X_7882485_SNP [dm6]	T	A	1.124e^-4	0.979	SYNONYMOUS_CODING Ir7f UPSTREAM Ir7e
3R	7907997	3R_7907997_SNP [dm3] 3R_12082275_SNP [dm6]	T	G	1.128e^-4	0.979	INTRON CG14741
2L	14244622	2L_14244622_SNP [dm3] 2L_14244622_SNP [dm6]	G	A	1.131e^-4	0.979	INTERGENIC
3L	18907815	3L_18907815_SNP [dm3] 3L_18914715_SNP [dm6]	C	T	1.147e^-4	0.979	UPSTREAM CG14077 INTERGENIC
X	11751088	X_11751088_SNP [dm3] X_11857055_SNP [dm6]	T	C	1.147e^-4	0.979	INTRON ATP7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3668746	2L_3668746_SNP [dm3] 2L_3668746_SNP [dm6]	T	G	1.149e^-4	0.979	SYNONYMOUS_CODING CG42463 UPSTREAM Sfp24Ba DOWNSTREAM Sfp24Bb INTRON CG34340
3R	13970328	3R_13970328_SNP [dm3] 3R_18144606_SNP [dm6]	T	C	1.150e^-4	0.979	INTERGENIC
3L	1077858	3L_1077858_SNP [dm3] 3L_1077858_SNP [dm6]	A	G	1.152e^-4	0.979	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15551407	2L_15551407_SNP [dm3] 2L_15551407_SNP [dm6]	C	T	1.160e^-4	0.979	UTR_3_PRIME CG15256 DOWNSTREAM CG15256
2R	16905606	2R_16905606_SNP [dm3] 2R_21018101_SNP [dm6]	C	A	1.161e^-4	0.979	UPSTREAM RIC-3 & 1 other INTRON RIC-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
X	21930491	X_21930491_SNP [dm3] X_22528655_SNP [dm6]	T	C	1.167e^-4	0.979	INTRON CG17600	TF binding site mE1_TFBS_sens
2R	489244	2R_489244_SNP [dm3] 2R_4601739_SNP [dm6]	A	G	1.167e^-4	0.979	INTRON p120ctn
2R	16905626	2R_16905626_SNP [dm3] 2R_21018121_SNP [dm6]	A	T	1.172e^-4	0.979	UPSTREAM RIC-3 & 1 other INTRON RIC-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
3L	9053341	3L_9053341_SNP [dm3] 3L_9060241_SNP [dm6]	C	A	1.178e^-4	0.979	INTRON Argk
2R	16905674	2R_16905674_SNP [dm3] 2R_21018169_SNP [dm6]	G	A	1.182e^-4	0.979	UTR_5_PRIME RIC-3 UPSTREAM CG3295 & 1 other INTRON RIC-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
X	4552855	X_4552855_DEL [dm3] X_4658822_DEL [dm6]	TTCT	T	1.189e^-4	0.979	UTR_3_PRIME CG3009 DOWNSTREAM Cbp80 INTRON CG3009
2L	4083184	2L_4083184_SNP [dm3] 2L_4083184_SNP [dm6]	A	G	1.194e^-4	0.979	INTRON ed
2R	7908069	2R_7908069_SNP [dm3] 2R_12020564_SNP [dm6]	A	C	1.202e^-4	0.979	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
2L	12254921	2L_12254921_SNP [dm3] 2L_12254921_SNP [dm6]	C	T	1.204e^-4	0.979	INTRON aret
3R	10635704	3R_10635704_SNP [dm3] 3R_14809982_SNP [dm6]	C	G	1.218e^-4	0.979	SYNONYMOUS_CODING btsz INTRON btsz	TF binding site mE1_TFBS_cad
3R	25542465	3R_25542465_SNP [dm3] 3R_29716743_SNP [dm6]	C	G	1.235e^-4	0.979	SYNONYMOUS_CODING Obp99b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15098188	2L_15098188_SNP [dm3] 2L_15098188_SNP [dm6]	T	C	1.236e^-4	0.979	INTERGENIC
X	4448658	X_4448658_SNP [dm3] X_4554625_SNP [dm6]	T	A	1.239e^-4	0.979	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10516240	2R_10516240_SNP [dm3] 2R_14628735_SNP [dm6]	G	A	1.240e^-4	0.979	INTERGENIC
X	3202119	X_3202119_SNP [dm3] X_3308086_SNP [dm6]	T	G	1.262e^-4	0.979	INTRON dnc
3L	6910973	3L_6910973_SNP [dm3] 3L_6917873_SNP [dm6]	T	A	1.263e^-4	0.979	INTERGENIC
X	14670524	X_14670524_SNP [dm3] X_14776491_SNP [dm6]	G	T	1.266e^-4	0.979	UPSTREAM CG5347 DOWNSTREAM CG5334 INTERGENIC
X	15989793	X_15989793_SNP [dm3] X_16095760_SNP [dm6]	G	T	1.266e^-4	0.979	INTRON CG42354 & 1 other
3L	18890098	3L_18890098_SNP [dm3] 3L_18896998_SNP [dm6]	A	G	1.268e^-4	0.979	UPSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site BDTNP1_TFBS_dl
X	1497195	X_1497195_SNP [dm3] X_1603162_SNP [dm6]	C	T	1.268e^-4	0.979	INTRON br & 1 other
2R	15385102	2R_15385102_SNP [dm3] 2R_19497597_SNP [dm6]	A	C	1.271e^-4	0.979	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14244643	2L_14244643_SNP [dm3] 2L_14244643_SNP [dm6]	G	C	1.286e^-4	0.979	INTERGENIC
X	10888353	X_10888353_SNP [dm3] X_10994320_SNP [dm6]	G	T	1.295e^-4	0.979	INTRON CG42339
2L	4957319	2L_4957319_SNP [dm3] 2L_4957319_SNP [dm6]	C	G	1.297e^-4	0.979	SYNONYMOUS_CODING Marcal1
2L	10115000	2L_10115000_SNP [dm3] 2L_10115000_SNP [dm6]	G	A	1.299e^-4	0.979	INTRON CG44153 & 1 other
X	2245125	X_2245125_SNP [dm3] X_2351092_SNP [dm6]	T	G	1.323e^-4	0.979	INTRON ptr
2R	18870254	2R_18870254_SNP [dm3] 2R_22982731_SNP [dm6]	T	G	1.327e^-4	0.979	SYNONYMOUS_CODING CG32834
2R	18467934	2R_18467934_SNP [dm3] 2R_22580429_SNP [dm6]	A	G	1.332e^-4	0.979	INTRON dnr1
2R	17293073	2R_17293073_SNP [dm3] 2R_21405568_SNP [dm6]	T	A	1.340e^-4	0.979	INTRON Sdc
2R	12040620	2R_12040620_SNP [dm3] 2R_16153115_SNP [dm6]	T	C	1.343e^-4	0.979	INTRON lbk
3L	8076676	3L_8076676_SNP [dm3] 3L_8083576_SNP [dm6]	T	C	1.347e^-4	0.979	UPSTREAM CR43974 INTRON Ect4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2L	17491455	2L_17491455_SNP [dm3] 2L_17491455_SNP [dm6]	A	G	1.349e^-4	0.979	INTRON qua
2R	12498333	2R_12498333_SNP [dm3] 2R_16610828_SNP [dm6]	C	T	1.349e^-4	0.979	INTRON CG5065
2R	12498335	2R_12498335_SNP [dm3] 2R_16610830_SNP [dm6]	T	C	1.349e^-4	0.979	INTRON CG5065
3R	6286541	3R_6286541_SNP [dm3] 3R_10460819_SNP [dm6]	C	T	1.351e^-4	0.979	UPSTREAM CR44939 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	2769361	X_2769361_DEL [dm3] X_2875328_DEL [dm6]	AGAAAACATC	A	1.369e^-4	0.979	DOWNSTREAM CG14417 INTRON kirre
3L	18215312	3L_18215312_INS [dm3] 3L_18222212_INS [dm6]	A	AGCG	1.373e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17106201	3L_17106201_SNP [dm3] 3L_17113101_SNP [dm6]	T	G	1.374e^-4	0.979	INTRON Rbp6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10109268	3L_10109268_SNP [dm3] 3L_10116168_SNP [dm6]	C	A	1.382e^-4	0.979	INTRON dpr6
3R	15163222	3R_15163222_INS [dm3] 3R_19337500_INS [dm6]	A	AA	1.386e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16803260	2L_16803260_SNP [dm3] 2L_16803260_SNP [dm6]	A	T	1.387e^-4	0.979	INTRON CG13280	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10404286	2R_10404286_SNP [dm3] 2R_14516781_SNP [dm6]	G	A	1.395e^-4	0.979	INTERGENIC
3L	2191951	3L_2191951_SNP [dm3] 3L_2191951_SNP [dm6]	T	G	1.409e^-4	0.979	NON_SYNONYMOUS_CODING CG5707 UTR_5_PRIME CG5707 UPSTREAM CG5707
3R	25968189	3R_25968189_SNP [dm3] 3R_30142467_SNP [dm6]	A	T	1.414e^-4	0.979	INTRON AdoR
3L	3909821	3L_3909821_SNP [dm3] 3L_3909821_SNP [dm6]	A	G	1.414e^-4	0.979	UTR_5_PRIME mge UPSTREAM mge DOWNSTREAM Eip63F-1
3L	14327894	3L_14327894_SNP [dm3] 3L_14334794_SNP [dm6]	C	A	1.415e^-4	0.979	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18883224	3L_18883224_SNP [dm3] 3L_18890124_SNP [dm6]	A	T	1.415e^-4	0.979	INTRON CG3961	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4161918	3L_4161918_SNP [dm3] 3L_4161918_SNP [dm6]	C	T	1.417e^-4	0.979	UTR_3_PRIME mas UPSTREAM nab	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4161955	3L_4161955_SNP [dm3] 3L_4161955_SNP [dm6]	C	T	1.418e^-4	0.979	UTR_3_PRIME mas	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	14449740	2L_14449740_SNP [dm3] 2L_14449740_SNP [dm6]	T	A	1.423e^-4	0.979	UPSTREAM CR45726 DOWNSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3R	21277876	3R_21277876_INS [dm3] 3R_25452154_INS [dm6]	T	TT	1.434e^-4	0.979	INTRON Fur1
2L	3268015	2L_3268015_SNP [dm3] 2L_3268015_SNP [dm6]	A	C	1.435e^-4	0.979	UPSTREAM CR44484 INTERGENIC
3R	25249666	3R_25249666_SNP [dm3] 3R_29423944_SNP [dm6]	T	C	1.437e^-4	0.979	INTRON Ptp99A
2R	12223268	2R_12223268_SNP [dm3] 2R_16335763_SNP [dm6]	C	T	1.445e^-4	0.979	UPSTREAM Hmgs INTRON Vha44	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17240671	3R_17240671_SNP [dm3] 3R_21414949_SNP [dm6]	T	A	1.458e^-4	0.979	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	4152399	3L_4152399_SNP [dm3] 3L_4152399_SNP [dm6]	T	A	1.458e^-4	0.979	UTR_3_PRIME CG1299	TF binding site mE1_TFBS_cad
2L	12725277	2L_12725277_SNP [dm3] 2L_12725277_SNP [dm6]	C	T	1.473e^-4	0.979	INTRON MRP
3L	18879442	3L_18879442_SNP [dm3] 3L_18886342_SNP [dm6]	C	T	1.486e^-4	0.979	INTRON CG3961
2L	17491451	2L_17491451_SNP [dm3] 2L_17491451_SNP [dm6]	A	G	1.489e^-4	0.979	INTRON qua
3L	7475491	3L_7475491_INS [dm3] 3L_7482391_INS [dm6]	A	AA	1.491e^-4	0.979	INTERGENIC
2L	12666797	2L_12666797_SNP [dm3] 2L_12666797_SNP [dm6]	A	G	1.501e^-4	0.979	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9664563	X_9664563_SNP [dm3] X_9770530_SNP [dm6]	A	C	1.508e^-4	0.979	INTERGENIC
3L	18889864	3L_18889864_SNP [dm3] 3L_18896764_SNP [dm6]	G	C	1.512e^-4	0.979	UPSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14400361	2R_14400361_SNP [dm3] 2R_18512856_SNP [dm6]	C	A	1.513e^-4	0.979	INTERGENIC
2L	1296871	2L_1296871_DEL [dm3] 2L_1296871_DEL [dm6]	GAC	G	1.513e^-4	0.979	DOWNSTREAM robo3 INTERGENIC
2L	10115002	2L_10115002_SNP [dm3] 2L_10115002_SNP [dm6]	A	G	1.521e^-4	0.979	INTRON CG44153 & 1 other
3R	5359196	3R_5359196_INS [dm3] 3R_9533474_INS [dm6]	CAGC	TTCTATTCTA	1.532e^-4	0.979	UPSTREAM by INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	7489172	3L_7489172_SNP [dm3] 3L_7496072_SNP [dm6]	T	C	1.536e^-4	0.979	UTR_5_PRIME Cyp4d8
3R	17487973	3R_17487973_SNP [dm3] 3R_21662251_SNP [dm6]	G	A	1.538e^-4	0.979	INTRON CG6353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18621668	3R_18621668_SNP [dm3] 3R_22795946_SNP [dm6]	C	T	1.543e^-4	0.979	INTERGENIC
3R	18621678	3R_18621678_SNP [dm3] 3R_22795956_SNP [dm6]	T	A	1.543e^-4	0.979	INTERGENIC
2L	15817107	2L_15817107_SNP [dm3] 2L_15817107_SNP [dm6]	A	G	1.553e^-4	0.979	INTERGENIC
3L	18914866	3L_18914866_SNP [dm3] 3L_18921766_SNP [dm6]	A	T	1.557e^-4	0.979	DOWNSTREAM CG32204 INTRON CG3819
3L	18913594	3L_18913594_SNP [dm3] 3L_18920494_SNP [dm6]	C	A	1.570e^-4	0.979	UTR_3_PRIME CG3819 UPSTREAM CG18223 DOWNSTREAM CG3819
3L	10300552	3L_10300552_SNP [dm3] 3L_10307452_SNP [dm6]	A	T	1.573e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2266061	2L_2266061_SNP [dm3] 2L_2266061_SNP [dm6]	G	A	1.575e^-4	0.979	UPSTREAM CG34049 INTERGENIC
3R	27042941	3R_27042941_SNP [dm3] 3R_31217219_SNP [dm6]	G	A	1.588e^-4	0.979	DOWNSTREAM RNaseP:RNA INTRON CG1746	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9216255	2L_9216255_SNP [dm3] 2L_9216255_SNP [dm6]	G	A	1.597e^-4	0.979	INTRON tai
2R	9974076	2R_9974076_DEL [dm3] 2R_14086571_DEL [dm6]	TATC	T	1.598e^-4	0.979	INTRON Prosap
3R	18622087	3R_18622087_SNP [dm3] 3R_22796365_SNP [dm6]	C	T	1.604e^-4	0.979	INTERGENIC
X	16724299	X_16724299_SNP [dm3] X_16830266_SNP [dm6]	T	C	1.608e^-4	0.979	INTRON CG13004
3L	7475488	3L_7475488_SNP [dm3] 3L_7482388_SNP [dm6]	A	T	1.609e^-4	0.979	INTERGENIC
2R	8854994	2R_8854994_SNP [dm3] 2R_12967489_SNP [dm6]	G	C	1.610e^-4	0.979	NON_SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18621700	3R_18621700_SNP [dm3] 3R_22795978_SNP [dm6]	T	C	1.610e^-4	0.979	INTERGENIC
2L	7371635	2L_7371635_SNP [dm3] 2L_7371635_SNP [dm6]	C	A	1.612e^-4	0.979	INTRON Wnt10
3L	10300223	3L_10300223_SNP [dm3] 3L_10307123_SNP [dm6]	C	T	1.613e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18888704	3L_18888704_SNP [dm3] 3L_18895604_SNP [dm6]	G	T	1.622e^-4	0.979	DOWNSTREAM snoRNA:Psi28S-2566 INTRON CG3902
X	6817901	X_6817901_SNP [dm3] X_6923868_SNP [dm6]	G	T	1.623e^-4	0.979	INTRON CG14431
3L	18914941	3L_18914941_SNP [dm3] 3L_18921841_SNP [dm6]	A	G	1.624e^-4	0.979	DOWNSTREAM CG32204 INTRON CG3819
X	5588282	X_5588282_SNP [dm3] X_5694249_SNP [dm6]	C	G	1.625e^-4	0.979	SYNONYMOUS_CODING CG3149	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	16502793	3L_16502793_INS [dm3] 3L_16509693_INS [dm6]	C	CTGTAACGCCAC...	1.627e^-4	0.979	INTRON CG43373
3R	12086769	3R_12086769_SNP [dm3] 3R_16261047_SNP [dm6]	T	C	1.644e^-4	0.979	DOWNSTREAM tara & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	22412778	X_22412778_SNP [dm3] X_23010942_SNP [dm6]	A	G	1.648e^-4	0.979	UTR_5_PRIME FucTC UPSTREAM CR45010	TF binding site BDTNP1_TFBS_dl
3R	5651214	3R_5651214_SNP [dm3] 3R_9825492_SNP [dm6]	T	A	1.660e^-4	0.979	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	12134608	3R_12134608_SNP [dm3] 3R_16308886_SNP [dm6]	C	T	1.673e^-4	0.979	DOWNSTREAM Zip89B INTERGENIC
3L	10300176	3L_10300176_SNP [dm3] 3L_10307076_SNP [dm6]	G	C	1.676e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	11751084	X_11751084_SNP [dm3] X_11857051_SNP [dm6]	G	A	1.691e^-4	0.979	INTRON ATP7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	20588243	2R_20588243_SNP [dm3] 2R_24700720_SNP [dm6]	C	A	1.694e^-4	0.979	STOP_GAINED Mid1
3R	20838866	3R_20838866_SNP [dm3] 3R_25013144_SNP [dm6]	A	G	1.709e^-4	0.979	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19496641	2R_19496641_SNP [dm3] 2R_23609118_SNP [dm6]	G	A	1.716e^-4	0.979	UPSTREAM CG4019 INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7475535	3L_7475535_SNP [dm3] 3L_7482435_SNP [dm6]	A	G	1.732e^-4	0.979	INTERGENIC
2R	7908117	2R_7908117_SNP [dm3] 2R_12020612_SNP [dm6]	C	T	1.736e^-4	0.979	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
X	8807740	X_8807740_SNP [dm3] X_8913707_SNP [dm6]	C	G	1.737e^-4	0.979	INTRON rdgA
2L	10643479	2L_10643479_SNP [dm3] 2L_10643479_SNP [dm6]	T	A	1.743e^-4	0.979	UTR_3_PRIME CG31872 UPSTREAM CG18284
2L	12255030	2L_12255030_SNP [dm3] 2L_12255030_SNP [dm6]	G	A	1.754e^-4	0.979	INTRON aret
X	22411960	X_22411960_SNP [dm3] X_23010124_SNP [dm6]	A	G	1.808e^-4	0.979	NON_SYNONYMOUS_CODING FucTC UPSTREAM CR45010 DOWNSTREAM CR45009	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	3777499	3R_3777499_SNP [dm3] 3R_7951777_SNP [dm6]	T	C	1.812e^-4	0.979	INTRON dsx
3L	8660124	3L_8660124_SNP [dm3] 3L_8667024_SNP [dm6]	G	T	1.822e^-4	0.979	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	19357680	X_19357680_INS [dm3] X_19463647_INS [dm6]	C	GAGGTATGAAGTATGA...	1.826e^-4	0.979	INTRON kek5
3L	4163887	3L_4163887_SNP [dm3] 3L_4163887_SNP [dm6]	C	G	1.828e^-4	0.979	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18914851	3L_18914851_SNP [dm3] 3L_18921751_SNP [dm6]	A	T	1.838e^-4	0.979	DOWNSTREAM CG32204 INTRON CG3819
X	14670523	X_14670523_SNP [dm3] X_14776490_SNP [dm6]	A	G	1.838e^-4	0.979	UPSTREAM CG5347 DOWNSTREAM CG5334 INTERGENIC
2L	4110369	2L_4110369_SNP [dm3] 2L_4110369_SNP [dm6]	A	G	1.843e^-4	0.979	INTRON ed
3R	13391693	3R_13391693_SNP [dm3] 3R_17565971_SNP [dm6]	G	A	1.847e^-4	0.979	INTRON Hmx
3R	21277862	3R_21277862_SNP [dm3] 3R_25452140_SNP [dm6]	A	T	1.848e^-4	0.979	INTRON Fur1
3R	4673741	3R_4673741_SNP [dm3] 3R_8848019_SNP [dm6]	G	A	1.853e^-4	0.979	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14571940	3L_14571940_SNP [dm3] 3L_14578840_SNP [dm6]	T	C	1.861e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	12131824	3R_12131824_SNP [dm3] 3R_16306102_SNP [dm6]	C	T	1.863e^-4	0.979	START_GAINED Zip89B UTR_5_PRIME Zip89B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16450200	2L_16450200_SNP [dm3] 2L_16450200_SNP [dm6]	C	T	1.867e^-4	0.979	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
3L	4160680	3L_4160680_SNP [dm3] 3L_4160680_SNP [dm6]	G	A	1.868e^-4	0.979	UTR_5_PRIME nab DOWNSTREAM mas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	8353159	2R_8353159_SNP [dm3] 2R_12465654_SNP [dm6]	T	A	1.877e^-4	0.979	DOWNSTREAM dgt5 & 1 other INTERGENIC
2L	9624567	2L_9624567_SNP [dm3] 2L_9624567_SNP [dm6]	G	A	1.880e^-4	0.979	UTR_3_PRIME CG31882
2L	10628429	2L_10628429_SNP [dm3] 2L_10628429_SNP [dm6]	G	T	1.881e^-4	0.979	DOWNSTREAM Trim9 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3525060	3L_3525060_SNP [dm3] 3L_3525060_SNP [dm6]	A	G	1.881e^-4	0.979	INTRON Eip63E
2R	6736284	2R_6736284_SNP [dm3] 2R_10848779_SNP [dm6]	G	A	1.884e^-4	0.979	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7889319	3L_7889319_SNP [dm3] 3L_7896219_SNP [dm6]	G	A	1.888e^-4	0.979	UTR_3_PRIME pbl DOWNSTREAM eIF4E-5
3R	23059769	3R_23059769_SNP [dm3] 3R_27234047_SNP [dm6]	A	G	1.896e^-4	0.979	SYNONYMOUS_CODING CG31068 INTRON CG31064	TF binding site mE1_TFBS_HSA
2L	2589274	2L_2589274_SNP [dm3] 2L_2589274_SNP [dm6]	C	T	1.897e^-4	0.979	INTERGENIC
3L	1267572	3L_1267572_SNP [dm3] 3L_1267572_SNP [dm6]	T	C	1.897e^-4	0.979	INTRON CG9134
3L	18888060	3L_18888060_SNP [dm3] 3L_18894960_SNP [dm6]	C	G	1.903e^-4	0.979	INTRON CG3902
3L	10695066	3L_10695066_SNP [dm3] 3L_10701966_SNP [dm6]	A	T	1.907e^-4	0.979	INTERGENIC
2L	8275515	2L_8275515_SNP [dm3] 2L_8275515_SNP [dm6]	T	G	1.913e^-4	0.979	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	2244799	X_2244799_SNP [dm3] X_2350766_SNP [dm6]	C	A	1.916e^-4	0.979	UPSTREAM ptr INTRON ptr
3R	15168663	3R_15168663_SNP [dm3] 3R_19342941_SNP [dm6]	A	T	1.919e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	8273355	2L_8273355_DEL [dm3] 2L_8273355_DEL [dm6]	TA	T	1.938e^-4	0.979	UTR_5_PRIME Btk29A INTRON Btk29A
3R	25075406	3R_25075406_DEL [dm3] 3R_29249684_DEL [dm6]	GTTAACTTGTTGTGATTTCT...	G	1.941e^-4	0.979	UPSTREAM SP1029 INTRON SP1029
3L	4160302	3L_4160302_SNP [dm3] 3L_4160302_SNP [dm6]	A	G	1.941e^-4	0.979	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
X	3790169	X_3790169_SNP [dm3] X_3896136_SNP [dm6]	C	G	1.944e^-4	0.979	NON_SYNONYMOUS_CODING CG42541	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11277743	X_11277743_SNP [dm3] X_11383710_SNP [dm6]	T	A	1.955e^-4	0.979	INTRON dlg1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25880535	3R_25880535_SNP [dm3] 3R_30054813_SNP [dm6]	A	G	1.955e^-4	0.979	UTR_3_PRIME spn-A DOWNSTREAM CG7946	TF binding site mE1_TFBS_HSA
3R	27043026	3R_27043026_SNP [dm3] 3R_31217304_SNP [dm6]	A	G	1.956e^-4	0.979	DOWNSTREAM RNaseP:RNA INTRON CG1746	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5000901	3R_5000901_SNP [dm3] 3R_9175179_SNP [dm6]	T	C	1.962e^-4	0.979	INTRON pum	TF binding site mE1_TFBS_bab1
X	12751230	X_12751230_SNP [dm3] X_12857197_SNP [dm6]	G	A	1.964e^-4	0.979	SYNONYMOUS_CODING CG4661 INTRON Pde9
3R	18732602	3R_18732602_SNP [dm3] 3R_22906880_SNP [dm6]	C	T	1.972e^-4	0.979	INTRON klg
3L	6763510	3L_6763510_SNP [dm3] 3L_6770410_SNP [dm6]	C	T	1.974e^-4	0.979	INTERGENIC
3L	4149736	3L_4149736_SNP [dm3] 3L_4149736_SNP [dm6]	C	T	1.977e^-4	0.979	INTRON CG1299	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	16172404	X_16172404_SNP [dm3] X_16278371_SNP [dm6]	G	A	1.982e^-4	0.979	UTR_5_PRIME eas UPSTREAM eas DOWNSTREAM Prosalpha4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	9974020	2R_9974020_DEL [dm3] 2R_14086515_DEL [dm6]	TA	C	1.984e^-4	0.979	INTRON Prosap
3L	6303062	3L_6303062_DEL [dm3] 3L_6309962_DEL [dm6]	AA	A	1.992e^-4	0.979	INTERGENIC
3L	5932666	3L_5932666_INS [dm3] 3L_5939566_INS [dm6]	A	AATGAACA	1.998e^-4	0.979	INTRON CG33993
X	8271992	X_8271992_SNP [dm3] X_8377959_SNP [dm6]	T	C	2.001e^-4	0.979	INTERGENIC
3L	13129587	3L_13129587_SNP [dm3] 3L_13136487_SNP [dm6]	G	T	2.007e^-4	0.979	SYNONYMOUS_CODING CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17491508	2L_17491508_SNP [dm3] 2L_17491508_SNP [dm6]	T	C	2.026e^-4	0.979	INTRON qua
3L	7165954	3L_7165954_SNP [dm3] 3L_7172854_SNP [dm6]	T	C	2.029e^-4	0.979	INTRON Dscam2
3L	7165956	3L_7165956_INS [dm3] 3L_7172856_INS [dm6]	T	CCTTCAGC	2.029e^-4	0.979	INTRON Dscam2
3L	15691238	3L_15691238_SNP [dm3] 3L_15698138_SNP [dm6]	C	G	2.038e^-4	0.979	SYNONYMOUS_CODING comm2
3L	10892866	3L_10892866_SNP [dm3] 3L_10899766_SNP [dm6]	A	C	2.041e^-4	0.979	UPSTREAM Aps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	19779314	X_19779314_SNP [dm3] X_19885281_SNP [dm6]	A	G	2.044e^-4	0.979	DOWNSTREAM amn INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	13720801	X_13720801_SNP [dm3] X_13826768_SNP [dm6]	A	C	2.044e^-4	0.979	DOWNSTREAM Nup93-1 INTRON jub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10078510	X_10078510_SNP [dm3] X_10184477_SNP [dm6]	T	A	2.049e^-4	0.979	INTRON CG43902 & 1 other
2R	13495553	2R_13495553_SNP [dm3] 2R_17608048_SNP [dm6]	C	G	2.055e^-4	0.979	SYNONYMOUS_CODING CG10936
2R	13638020	2R_13638020_SNP [dm3] 2R_17750515_SNP [dm6]	G	A	2.079e^-4	0.979	DOWNSTREAM CG10931 INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11128929	X_11128929_SNP [dm3] X_11234896_SNP [dm6]	C	A	2.081e^-4	0.979	INTRON CG44422
3R	12082373	3R_12082373_SNP [dm3] 3R_16256651_SNP [dm6]	A	T	2.084e^-4	0.979	INTRON tara	TF binding site mE1_TFBS_cad mE1_TFBS_eve
2L	12596387	2L_12596387_SNP [dm3] 2L_12596387_SNP [dm6]	T	A	2.085e^-4	0.979	INTRON nub
2R	12499668	2R_12499668_SNP [dm3] 2R_16612163_SNP [dm6]	G	A	2.094e^-4	0.979	UTR_5_PRIME CG5065 INTRON CG5065	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	13241208	3L_13241208_SNP [dm3] 3L_13248108_SNP [dm6]	G	A	2.096e^-4	0.979	SYNONYMOUS_CODING CG32119 INTRON caps
X	4438547	X_4438547_SNP [dm3] X_4544514_SNP [dm6]	A	G	2.097e^-4	0.979	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22381879	X_22381879_SNP [dm3] X_22980043_SNP [dm6]	G	C	2.098e^-4	0.979	DOWNSTREAM stnA & 1 other INTERGENIC
2L	7966945	2L_7966945_SNP [dm3] 2L_7966945_SNP [dm6]	C	T	2.109e^-4	0.979	INTRON Snoo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8275457	2L_8275457_SNP [dm3] 2L_8275457_SNP [dm6]	G	A	2.116e^-4	0.979	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9203112	2L_9203112_INS [dm3] 2L_9203112_INS [dm6]	G	GCA	2.128e^-4	0.979	INTRON tai	TF binding site mE1_TFBS_Trl
3R	13202212	3R_13202212_SNP [dm3] 3R_17376490_SNP [dm6]	A	G	2.140e^-4	0.979	SYNONYMOUS_CODING Brf
3L	19555421	3L_19555421_DEL [dm3] 3L_19562321_DEL [dm6]	CAAGCAGGC	C	2.155e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9548540	3L_9548540_SNP [dm3] 3L_9555440_SNP [dm6]	G	A	2.184e^-4	0.979	INTRON CG42673
2L	7155072	2L_7155072_SNP [dm3] 2L_7155072_SNP [dm6]	C	G	2.189e^-4	0.979	INTRON Pvf3
X	5450811	X_5450811_SNP [dm3] X_5556778_SNP [dm6]	A	G	2.197e^-4	0.979	INTRON Vsx2
X	2244822	X_2244822_SNP [dm3] X_2350789_SNP [dm6]	T	A	2.201e^-4	0.979	UPSTREAM ptr INTRON ptr
X	9664557	X_9664557_SNP [dm3] X_9770524_SNP [dm6]	C	A	2.206e^-4	0.979	INTERGENIC
3L	13329225	3L_13329225_SNP [dm3] 3L_13336125_SNP [dm6]	T	C	2.212e^-4	0.979	INTERGENIC
2L	5567381	2L_5567381_SNP [dm3] 2L_5567381_SNP [dm6]	A	G	2.217e^-4	0.979	INTERGENIC
3R	7861369	3R_7861369_SNP [dm3] 3R_12035647_SNP [dm6]	G	T	2.217e^-4	0.979	DOWNSTREAM ssp5 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10643475	2L_10643475_SNP [dm3] 2L_10643475_SNP [dm6]	T	A	2.227e^-4	0.979	UTR_3_PRIME CG31872 UPSTREAM CG18284
X	2244844	X_2244844_SNP [dm3] X_2350811_SNP [dm6]	C	A	2.237e^-4	0.979	UPSTREAM ptr INTRON ptr
3L	18882755	3L_18882755_SNP [dm3] 3L_18889655_SNP [dm6]	C	G	2.250e^-4	0.979	INTRON CG3961	TF binding site BDTNP1_TFBS_dl
2R	13640154	2R_13640154_SNP [dm3] 2R_17752649_SNP [dm6]	G	A	2.259e^-4	0.979	SPLICE_SITE_REGION CG5002 DOWNSTREAM CG6385 INTRON CG5002	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12132497	3R_12132497_SNP [dm3] 3R_16306775_SNP [dm6]	C	A	2.260e^-4	0.979	NON_SYNONYMOUS_CODING Zip89B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16654523	2R_16654523_SNP [dm3] 2R_20767018_SNP [dm6]	C	A	2.265e^-4	0.979	DOWNSTREAM CR44665 EXON CR44665
2R	17812243	2R_17812243_SNP [dm3] 2R_21924738_SNP [dm6]	G	A	2.269e^-4	0.979	INTRON Fili
2L	15098226	2L_15098226_SNP [dm3] 2L_15098226_SNP [dm6]	A	C	2.292e^-4	0.979	INTERGENIC
3L	18882674	3L_18882674_SNP [dm3] 3L_18889574_SNP [dm6]	T	G	2.296e^-4	0.979	INTRON CG3961
2L	9203234	2L_9203234_SNP [dm3] 2L_9203234_SNP [dm6]	G	A	2.318e^-4	0.979	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1260177	3L_1260177_SNP [dm3] 3L_1260177_SNP [dm6]	T	G	2.320e^-4	0.979	INTRON CG9134
2L	17574396	2L_17574396_SNP [dm3] 2L_17574396_SNP [dm6]	T	C	2.327e^-4	0.979	UPSTREAM mir-287 DOWNSTREAM CR45358 INTERGENIC
2L	5567454	2L_5567454_SNP [dm3] 2L_5567454_SNP [dm6]	C	G	2.331e^-4	0.979	INTERGENIC
X	4172279	X_4172279_SNP [dm3] X_4278246_SNP [dm6]	T	A	2.336e^-4	0.979	UPSTREAM CG15578 INTERGENIC
3L	18888116	3L_18888116_SNP [dm3] 3L_18895016_SNP [dm6]	G	A	2.337e^-4	0.979	INTRON CG3902
X	10888624	X_10888624_SNP [dm3] X_10994591_SNP [dm6]	C	G	2.346e^-4	0.979	INTRON CG42339
3L	4163848	3L_4163848_SNP [dm3] 3L_4163848_SNP [dm6]	C	G	2.349e^-4	0.979	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2158926	2L_2158926_SNP [dm3] 2L_2158926_SNP [dm6]	C	T	2.378e^-4	0.979	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10695146	3L_10695146_DEL [dm3] 3L_10702046_DEL [dm6]	AAA	TT	2.391e^-4	0.979	INTERGENIC
2L	4180740	2L_4180740_SNP [dm3] 2L_4180740_SNP [dm6]	A	T	2.396e^-4	0.979	INTERGENIC
3L	13818632	3L_13818632_SNP [dm3] 3L_13825532_SNP [dm6]	G	A	2.397e^-4	0.979	INTERGENIC
3R	25597625	3R_25597625_SNP [dm3] 3R_29771903_SNP [dm6]	A	T	2.397e^-4	0.979	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22919731	3L_22919731_SNP [dm3] 3L_22926631_SNP [dm6]	A	C	2.398e^-4	0.979	INTERGENIC
X	11390441	X_11390441_SNP [dm3] X_11496408_SNP [dm6]	C	T	2.398e^-4	0.979	INTRON Drak	TF binding site BDTNP1_TFBS_dl
3R	25555073	3R_25555073_SNP [dm3] 3R_29729351_SNP [dm6]	C	T	2.400e^-4	0.979	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da
3L	18914956	3L_18914956_INS [dm3] 3L_18921856_INS [dm6]	G	GG	2.438e^-4	0.979	DOWNSTREAM CG32204 INTRON CG3819
X	15558951	X_15558951_SNP [dm3] X_15664918_SNP [dm6]	T	A	2.441e^-4	0.979	INTRON CR43299 EXON CR43299
X	19301475	X_19301475_INS [dm3] X_19407442_INS [dm6]	G	GG	2.443e^-4	0.979	INTRON kek5
2R	7908111	2R_7908111_SNP [dm3] 2R_12020606_SNP [dm6]	G	T	2.454e^-4	0.979	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
2R	7731470	2R_7731470_SNP [dm3] 2R_11843965_SNP [dm6]	T	A	2.454e^-4	0.979	UTR_5_PRIME S2P UPSTREAM CG43190 DOWNSTREAM CR44304
2L	10353623	2L_10353623_SNP [dm3] 2L_10353623_SNP [dm6]	C	T	2.462e^-4	0.979	SYNONYMOUS_CODING CG34367	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2244846	X_2244846_SNP [dm3] X_2350813_SNP [dm6]	T	C	2.489e^-4	0.979	UPSTREAM ptr INTRON ptr
X	20449365	X_20449365_SNP [dm3] X_20578338_SNP [dm6]	A	C	2.492e^-4	0.979	INTERGENIC
2L	15100132	2L_15100132_SNP [dm3] 2L_15100132_SNP [dm6]	G	A	2.497e^-4	0.979	INTERGENIC
3L	9053362	3L_9053362_SNP [dm3] 3L_9060262_SNP [dm6]	A	G	2.500e^-4	0.979	INTRON Argk
2R	4198105	2R_4198105_SNP [dm3] 2R_8310600_SNP [dm6]	A	G	2.504e^-4	0.979	DOWNSTREAM CR44449 & 1 other INTERGENIC
3R	13055863	3R_13055863_SNP [dm3] 3R_17230141_SNP [dm6]	C	G	2.511e^-4	0.979	INTERGENIC
3L	14647243	3L_14647243_INS [dm3] 3L_14654143_INS [dm6]	A	AATATGATA	2.513e^-4	0.979	INTRON dlp
3R	19763619	3R_19763619_SNP [dm3] 3R_23937897_SNP [dm6]	A	G	2.526e^-4	0.979	SYNONYMOUS_CODING Gdh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25555058	3R_25555058_SNP [dm3] 3R_29729336_SNP [dm6]	C	T	2.529e^-4	0.979	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da
2L	2588285	2L_2588285_SNP [dm3] 2L_2588285_SNP [dm6]	C	T	2.530e^-4	0.979	INTERGENIC
3R	11472703	3R_11472703_SNP [dm3] 3R_15646981_SNP [dm6]	G	A	2.530e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	2507315	3L_2507315_SNP [dm3] 3L_2507315_SNP [dm6]	C	T	2.532e^-4	0.979	UTR_3_PRIME Spn DOWNSTREAM Spn
3L	2577043	3L_2577043_SNP [dm3] 3L_2577043_SNP [dm6]	A	C	2.532e^-4	0.979	INTRON msn	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15346757	3R_15346757_DEL [dm3] 3R_19521035_DEL [dm6]	TGTTGCTTT	T	2.540e^-4	0.979	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6872114	2L_6872114_SNP [dm3] 2L_6872114_SNP [dm6]	C	T	2.542e^-4	0.979	SPLICE_SITE_DONOR CR44915 UPSTREAM CR44914 INTRON CR44915
3L	7120503	3L_7120503_SNP [dm3] 3L_7127403_SNP [dm6]	T	C	2.548e^-4	0.979	DOWNSTREAM CG8629 INTRON BBS1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2860360	2R_2860360_SNP [dm3] 2R_6972855_SNP [dm6]	C	T	2.555e^-4	0.979	SYNONYMOUS_CODING Cyp6u1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2598498	2L_2598498_SNP [dm3] 2L_2598498_SNP [dm6]	C	A	2.559e^-4	0.979	DOWNSTREAM CR44790 INTERGENIC
3L	22749755	3L_22749755_SNP [dm3] 3L_22756655_SNP [dm6]	A	T	2.565e^-4	0.979	INTRON SPoCk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19189164	2R_19189164_SNP [dm3] 2R_23301641_SNP [dm6]	T	C	2.574e^-4	0.979	INTERGENIC
3R	11738647	3R_11738647_SNP [dm3] 3R_15912925_SNP [dm6]	A	T	2.575e^-4	0.979	NON_SYNONYMOUS_CODING CG45105 UTR_3_PRIME CG45105 INTRON CG45105	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4733344	2L_4733344_SNP [dm3] 2L_4733344_SNP [dm6]	A	G	2.589e^-4	0.979	SYNONYMOUS_CODING CG15631	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15691567	3L_15691567_SNP [dm3] 3L_15698467_SNP [dm6]	A	G	2.604e^-4	0.979	INTRON comm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	12633217	2R_12633217_SNP [dm3] 2R_16745712_SNP [dm6]	T	C	2.606e^-4	0.979	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
X	1846068	X_1846068_SNP [dm3] X_1952035_SNP [dm6]	A	G	2.607e^-4	0.979	INTRON Hr4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6730104	3R_6730104_SNP [dm3] 3R_10904382_SNP [dm6]	C	T	2.608e^-4	0.979	INTERGENIC
3R	17216193	3R_17216193_SNP [dm3] 3R_21390471_SNP [dm6]	G	A	2.609e^-4	0.979	DOWNSTREAM bap INTERGENIC
3L	13292298	3L_13292298_SNP [dm3] 3L_13299198_SNP [dm6]	T	G	2.610e^-4	0.979	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	20343794	3R_20343794_SNP [dm3] 3R_24518072_SNP [dm6]	A	T	2.612e^-4	0.979	UTR_3_PRIME CG13617 UPSTREAM Pp1alpha-96A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20343803	3R_20343803_SNP [dm3] 3R_24518081_SNP [dm6]	C	T	2.612e^-4	0.979	UTR_3_PRIME CG13617 UPSTREAM Pp1alpha-96A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22417938	X_22417938_SNP [dm3] X_23016102_SNP [dm6]	G	A	2.621e^-4	0.979	UTR_3_PRIME CG13865 DOWNSTREAM CG13865
2R	10699676	2R_10699676_SNP [dm3] 2R_14812171_SNP [dm6]	A	G	2.622e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs
3R	15042216	3R_15042216_SNP [dm3] 3R_19216494_SNP [dm6]	T	G	2.622e^-4	0.979	UTR_3_PRIME vib
2L	2158806	2L_2158806_SNP [dm3] 2L_2158806_SNP [dm6]	C	T	2.628e^-4	0.979	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5645852	3R_5645852_SNP [dm3] 3R_9820130_SNP [dm6]	C	T	2.632e^-4	0.979	UPSTREAM CG9458 DOWNSTREAM CG42857 INTERGENIC
3L	1278704	3L_1278704_SNP [dm3] 3L_1278704_SNP [dm6]	G	T	2.648e^-4	0.979	INTRON CG32333
2R	12872555	2R_12872555_SNP [dm3] 2R_16985050_SNP [dm6]	A	G	2.668e^-4	0.979	INTRON Cbp53E
3L	13129507	3L_13129507_SNP [dm3] 3L_13136407_SNP [dm6]	G	A	2.668e^-4	0.979	INTRON CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8271982	X_8271982_SNP [dm3] X_8377949_SNP [dm6]	T	A	2.669e^-4	0.979	INTERGENIC
2R	18166225	2R_18166225_SNP [dm3] 2R_22278720_SNP [dm6]	T	C	2.674e^-4	0.979	INTRON dve
3L	18914907	3L_18914907_SNP [dm3] 3L_18921807_SNP [dm6]	G	T	2.683e^-4	0.979	DOWNSTREAM CG32204 INTRON CG3819
2L	17423202	2L_17423202_SNP [dm3] 2L_17423202_SNP [dm6]	C	A	2.683e^-4	0.979	INTRON Dif
3R	17487997	3R_17487997_MNP [dm3] 3R_21662275_MNP [dm6]	GTC	TAT	2.685e^-4	0.979	INTRON CG6353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10980051	2R_10980051_SNP [dm3] 2R_15092546_SNP [dm6]	G	A	2.685e^-4	0.979	DOWNSTREAM CR44457 INTERGENIC
2R	17355310	2R_17355310_SNP [dm3] 2R_21467805_SNP [dm6]	T	A	2.711e^-4	0.979	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10699833	2R_10699833_SNP [dm3] 2R_14812328_SNP [dm6]	T	C	2.715e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs
3L	18837619	3L_18837619_SNP [dm3] 3L_18844519_SNP [dm6]	G	A	2.715e^-4	0.979	INTRON Indy
2L	13780099	2L_13780099_SNP [dm3] 2L_13780099_SNP [dm6]	G	A	2.718e^-4	0.979	START_GAINED CG9008 UTR_5_PRIME CG9008 UPSTREAM p38b	TF binding site BDTNP1_TFBS_dl
2L	3509447	2L_3509447_SNP [dm3] 2L_3509447_SNP [dm6]	G	A	2.728e^-4	0.979	SYNONYMOUS_CODING CG31954 DOWNSTREAM CR45299 & 2 others
X	15153921	X_15153921_SNP [dm3] X_15259888_SNP [dm6]	T	C	2.737e^-4	0.979	INTERGENIC
3R	15301505	3R_15301505_SNP [dm3] 3R_19475783_SNP [dm6]	C	A	2.744e^-4	0.979	INTRON Dys	TF binding site mE1_TFBS_inv
2R	18464748	2R_18464748_SNP [dm3] 2R_22577243_SNP [dm6]	C	T	2.746e^-4	0.979	INTRON dnr1
3L	8916853	3L_8916853_SNP [dm3] 3L_8923753_SNP [dm6]	G	A	2.750e^-4	0.979	INTRON Tsp66E
X	22365782	X_22365782_SNP [dm3] X_22963946_SNP [dm6]	A	T	2.752e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11801697	2R_11801697_DEL [dm3] 2R_15914192_DEL [dm6]	GG	G	2.756e^-4	0.979	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10952809	3R_10952809_SNP [dm3] 3R_15127087_SNP [dm6]	G	C	2.761e^-4	0.979	INTRON CG42788
2L	2158860	2L_2158860_SNP [dm3] 2L_2158860_SNP [dm6]	G	C	2.763e^-4	0.979	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4754928	2R_4754928_SNP [dm3] 2R_8867423_SNP [dm6]	C	T	2.763e^-4	0.979	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7700406	X_7700406_SNP [dm3] X_7806373_SNP [dm6]	A	T	2.766e^-4	0.979	INTERGENIC
X	4954190	X_4954190_SNP [dm3] X_5060157_SNP [dm6]	T	A	2.783e^-4	0.979	INTRON CR44833 & 1 other
3R	15013138	3R_15013138_SNP [dm3] 3R_19187416_SNP [dm6]	C	T	2.784e^-4	0.979	INTRON CG31475	TF binding site mE1_TFBS_inv
3R	25721852	3R_25721852_SNP [dm3] 3R_29896130_SNP [dm6]	C	T	2.789e^-4	0.979	INTRON CG31038	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6851976	3R_6851976_SNP [dm3] 3R_11026254_SNP [dm6]	T	C	2.792e^-4	0.979	INTRON CG34114
3R	6851978	3R_6851978_SNP [dm3] 3R_11026256_SNP [dm6]	C	G	2.792e^-4	0.979	INTRON CG34114
3L	1689187	3L_1689187_INS [dm3] 3L_1689187_INS [dm6]	C	CTCC	2.796e^-4	0.979	UTR_5_PRIME CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi
3L	3470254	3L_3470254_DEL [dm3] 3L_3470254_DEL [dm6]	TT	T	2.802e^-4	0.979	INTRON CG14971
2L	12924149	2L_12924149_SNP [dm3] 2L_12924149_SNP [dm6]	A	G	2.811e^-4	0.979	INTRON ACXA	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	11350156	3R_11350156_SNP [dm3] 3R_15524434_SNP [dm6]	G	A	2.816e^-4	0.979	INTERGENIC
2L	17574410	2L_17574410_SNP [dm3] 2L_17574410_SNP [dm6]	T	C	2.816e^-4	0.979	UPSTREAM mir-287 DOWNSTREAM CR45358 INTERGENIC
2L	12040126	2L_12040126_SNP [dm3] 2L_12040126_SNP [dm6]	T	C	2.817e^-4	0.979	SYNONYMOUS_CODING CG6766 DOWNSTREAM CG6785	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13241096	3L_13241096_SNP [dm3] 3L_13247996_SNP [dm6]	C	T	2.829e^-4	0.979	NON_SYNONYMOUS_CODING CG32119 INTRON caps
X	8402895	X_8402895_DEL [dm3] X_8508862_DEL [dm6]	TGCG	T	2.832e^-4	0.979	UPSTREAM CG33181 INTRON CG33181
X	11217838	X_11217838_SNP [dm3] X_11323805_SNP [dm6]	G	A	2.839e^-4	0.979	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	15363241	2L_15363241_SNP [dm3] 2L_15363241_SNP [dm6]	C	G	2.842e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7891086	3R_7891086_SNP [dm3] 3R_12065364_SNP [dm6]	A	G	2.848e^-4	0.979	INTERGENIC
3R	11553443	3R_11553443_SNP [dm3] 3R_15727721_SNP [dm6]	G	C	2.849e^-4	0.979	INTERGENIC
3L	18913471	3L_18913471_SNP [dm3] 3L_18920371_SNP [dm6]	A	G	2.852e^-4	0.979	UPSTREAM CG18223 DOWNSTREAM CG3819 INTERGENIC
X	5418313	X_5418313_SNP [dm3] X_5524280_SNP [dm6]	A	G	2.854e^-4	0.979	DOWNSTREAM snoRNA:Psi28S-3342 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
X	4438542	X_4438542_SNP [dm3] X_4544509_SNP [dm6]	A	T	2.856e^-4	0.979	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8275815	2L_8275815_SNP [dm3] 2L_8275815_SNP [dm6]	G	A	2.857e^-4	0.979	INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15691551	3L_15691551_SNP [dm3] 3L_15698451_SNP [dm6]	T	C	2.868e^-4	0.979	NON_SYNONYMOUS_CODING comm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	11350158	3R_11350158_SNP [dm3] 3R_15524436_SNP [dm6]	A	G	2.869e^-4	0.979	INTERGENIC
2L	17491470	2L_17491470_DEL [dm3] 2L_17491470_DEL [dm6]	TA	T	2.880e^-4	0.979	INTRON qua
2R	7512927	2R_7512927_SNP [dm3] 2R_11625422_SNP [dm6]	T	G	2.882e^-4	0.979	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2791123	3R_2791123_SNP [dm3] 3R_6965401_SNP [dm6]	T	G	2.886e^-4	0.979	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	16654358	2R_16654358_SNP [dm3] 2R_20766853_SNP [dm6]	T	A	2.887e^-4	0.979	DOWNSTREAM CR44665 EXON CR44665
3L	8917206	3L_8917206_SNP [dm3] 3L_8924106_SNP [dm6]	T	C	2.890e^-4	0.979	INTRON Tsp66E
2L	2787394	2L_2787394_SNP [dm3] 2L_2787394_SNP [dm6]	T	G	2.908e^-4	0.979	INTRON Syt1
X	22112664	X_22112664_SNP [dm3] X_22710828_SNP [dm6]	C	T	2.908e^-4	0.979	INTRON CR44997	transposable element FlyBase
3R	12082443	3R_12082443_INS [dm3] 3R_16256721_INS [dm6]	T	CTC	2.917e^-4	0.979	INTRON tara	TF binding site mE1_TFBS_cad mE1_TFBS_eve
3L	18882383	3L_18882383_SNP [dm3] 3L_18889283_SNP [dm6]	A	G	2.923e^-4	0.979	INTRON CG3961
X	17900721	X_17900721_SNP [dm3] X_18006688_SNP [dm6]	C	T	2.929e^-4	0.979	NON_SYNONYMOUS_CODING CG12672 INTRON Sh
3L	9053447	3L_9053447_SNP [dm3] 3L_9060347_SNP [dm6]	T	C	2.929e^-4	0.979	INTRON Argk
3R	14585606	3R_14585606_SNP [dm3] 3R_18759884_SNP [dm6]	C	T	2.937e^-4	0.979	NON_SYNONYMOUS_CODING CG7720
2L	2164370	2L_2164370_SNP [dm3] 2L_2164370_SNP [dm6]	G	A	2.940e^-4	0.979	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	15461665	2L_15461665_SNP [dm3] 2L_15461665_SNP [dm6]	A	G	2.951e^-4	0.979	INTERGENIC
X	1497192	X_1497192_INS [dm3] X_1603159_INS [dm6]	A	ACCCATGG	2.960e^-4	0.979	INTRON br & 1 other
3L	8314431	3L_8314431_SNP [dm3] 3L_8321331_SNP [dm6]	C	T	2.963e^-4	0.979	INTRON CG13670	TF binding site mE1_TFBS_cad
X	22412390	X_22412390_DEL [dm3] X_23010554_DEL [dm6]	GTGACTGAGTG...	G	2.974e^-4	0.979	FRAME_SHIFT FucTC UPSTREAM CR45010	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	9594662	3L_9594662_SNP [dm3] 3L_9601562_SNP [dm6]	T	C	2.994e^-4	0.979	START_GAINED CG3306 UTR_5_PRIME CG3306 UPSTREAM CG3088
2R	9391563	2R_9391563_SNP [dm3] 2R_13504058_SNP [dm6]	A	T	2.998e^-4	0.979	SYNONYMOUS_CODING mars	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9053521	3L_9053521_SNP [dm3] 3L_9060421_SNP [dm6]	T	G	3.005e^-4	0.979	INTRON Argk
3L	18888703	3L_18888703_SNP [dm3] 3L_18895603_SNP [dm6]	C	G	3.012e^-4	0.979	DOWNSTREAM snoRNA:Psi28S-2566 INTRON CG3902
3L	10898108	3L_10898108_SNP [dm3] 3L_10905008_SNP [dm6]	A	T	3.013e^-4	0.979	INTERGENIC
2L	14363566	2L_14363566_SNP [dm3] 2L_14363566_SNP [dm6]	C	A	3.026e^-4	0.979	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16912819	2L_16912819_SNP [dm3] 2L_16912819_SNP [dm6]	G	A	3.027e^-4	0.979	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_sens
X	5030697	X_5030697_SNP [dm3] X_5136664_SNP [dm6]	G	A	3.028e^-4	0.979	INTRON rg & 1 other
3L	18893506	3L_18893506_SNP [dm3] 3L_18900406_SNP [dm6]	A	G	3.031e^-4	0.979	DOWNSTREAM arx & 1 other INTERGENIC
2R	9820146	2R_9820146_SNP [dm3] 2R_13932641_SNP [dm6]	C	G	3.031e^-4	0.979	INTRON shot
3L	12562244	3L_12562244_SNP [dm3] 3L_12569144_SNP [dm6]	A	G	3.033e^-4	0.979	INTRON sowah	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	11221089	X_11221089_SNP [dm3] X_11327056_SNP [dm6]	C	G	3.035e^-4	0.979	INTRON CG1657	TF binding site BDTNP1_TFBS_dl
3L	7489169	3L_7489169_SNP [dm3] 3L_7496069_SNP [dm6]	G	A	3.037e^-4	0.979	UTR_5_PRIME Cyp4d8
X	7356568	X_7356568_SNP [dm3] X_7462535_SNP [dm6]	T	C	3.044e^-4	0.979	INTERGENIC
2L	4104518	2L_4104518_SNP [dm3] 2L_4104518_SNP [dm6]	A	C	3.047e^-4	0.979	INTRON ed
3L	19696576	3L_19696576_SNP [dm3] 3L_19703476_SNP [dm6]	T	G	3.055e^-4	0.979	INTRON serp
2L	5567402	2L_5567402_SNP [dm3] 2L_5567402_SNP [dm6]	C	T	3.080e^-4	0.979	INTERGENIC
2L	3391194	2L_3391194_SNP [dm3] 2L_3391194_SNP [dm6]	T	A	3.081e^-4	0.979	INTERGENIC
2R	15463535	2R_15463535_SNP [dm3] 2R_19576030_SNP [dm6]	A	G	3.082e^-4	0.979	INTRON sm
2R	7504276	2R_7504276_INS [dm3] 2R_11616771_INS [dm6]	A	CTACC	3.086e^-4	0.979	UPSTREAM tou DOWNSTREAM Egm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_Trl
3R	12933316	3R_12933316_SNP [dm3] 3R_17107594_SNP [dm6]	G	A	3.092e^-4	0.979	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2245003	X_2245003_SNP [dm3] X_2350970_SNP [dm6]	T	C	3.092e^-4	0.979	INTRON ptr
3L	8833945	3L_8833945_SNP [dm3] 3L_8840845_SNP [dm6]	A	C	3.095e^-4	0.979	INTRON dally	TF binding site mE1_TFBS_HSA
3R	16980894	3R_16980894_SNP [dm3] 3R_21155172_SNP [dm6]	G	T	3.103e^-4	0.979	INTRON SNF4Agamma
2L	16623208	2L_16623208_SNP [dm3] 2L_16623208_SNP [dm6]	A	T	3.105e^-4	0.979	INTRON CG42389
2L	3849098	2L_3849098_SNP [dm3] 2L_3849098_SNP [dm6]	A	C	3.112e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
X	8271984	X_8271984_SNP [dm3] X_8377951_SNP [dm6]	T	C	3.119e^-4	0.979	INTERGENIC
X	2276870	X_2276870_SNP [dm3] X_2382837_SNP [dm6]	G	T	3.120e^-4	0.979	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18570672	X_18570672_SNP [dm3] X_18676639_SNP [dm6]	G	A	3.120e^-4	0.979	EXON CR45710
3L	10507370	3L_10507370_SNP [dm3] 3L_10514270_SNP [dm6]	G	A	3.125e^-4	0.979	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13241129	3L_13241129_SNP [dm3] 3L_13248029_SNP [dm6]	G	A	3.133e^-4	0.979	SYNONYMOUS_CODING CG32119 INTRON caps
2L	8287125	2L_8287125_DEL [dm3] 2L_8287125_DEL [dm6]	CC	C	3.134e^-4	0.979	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18886072	3L_18886072_SNP [dm3] 3L_18892972_SNP [dm6]	C	T	3.140e^-4	0.979	SYNONYMOUS_CODING NijB DOWNSTREAM CG3902	TF binding site mE1_TFBS_cad
2R	8937081	2R_8937081_SNP [dm3] 2R_13049576_SNP [dm6]	G	A	3.141e^-4	0.979	NON_SYNONYMOUS_CODING CG13324
X	19983490	X_19983490_SNP [dm3] X_20089457_SNP [dm6]	A	C	3.142e^-4	0.979	INTERGENIC
2R	11617898	2R_11617898_SNP [dm3] 2R_15730393_SNP [dm6]	T	C	3.142e^-4	0.979	INTRON CG30089
3L	9822240	3L_9822240_SNP [dm3] 3L_9829140_SNP [dm6]	G	T	3.144e^-4	0.979	UPSTREAM CG43897 INTRON CG43897
3R	25312248	3R_25312248_SNP [dm3] 3R_29486526_SNP [dm6]	C	A	3.146e^-4	0.979	UTR_3_PRIME Ptp99A DOWNSTREAM CG2321 INTRON CG2321
2L	13591339	2L_13591339_SNP [dm3] 2L_13591339_SNP [dm6]	T	C	3.148e^-4	0.979	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4516727	2L_4516727_SNP [dm3] 2L_4516727_SNP [dm6]	A	G	3.148e^-4	0.979	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7120509	3L_7120509_SNP [dm3] 3L_7127409_SNP [dm6]	C	T	3.150e^-4	0.979	DOWNSTREAM CG8629 INTRON BBS1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15069056	3R_15069056_SNP [dm3] 3R_19243334_SNP [dm6]	C	T	3.153e^-4	0.979	SYNONYMOUS_CODING unc79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8910582	2L_8910582_SNP [dm3] 2L_8910582_SNP [dm6]	C	A	3.154e^-4	0.979	INTRON CG34398
2L	11349381	2L_11349381_SNP [dm3] 2L_11349381_SNP [dm6]	T	C	3.160e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs
3R	6320168	3R_6320168_SNP [dm3] 3R_10494446_SNP [dm6]	A	T	3.166e^-4	0.979	INTERGENIC
2R	2464467	2R_2464467_SNP [dm3] 2R_6576962_SNP [dm6]	C	G	3.168e^-4	0.979	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18919866	3L_18919866_SNP [dm3] 3L_18926766_SNP [dm6]	G	A	3.169e^-4	0.979	DOWNSTREAM CG43049 INTRON CG32204	TF binding site mE1_TFBS_inv
2L	5980840	2L_5980840_SNP [dm3] 2L_5980840_SNP [dm6]	A	T	3.169e^-4	0.979	UPSTREAM chic & 1 other INTRON chic	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
X	2244792	X_2244792_SNP [dm3] X_2350759_SNP [dm6]	T	G	3.170e^-4	0.979	UPSTREAM ptr INTRON ptr
2R	10699816	2R_10699816_INS [dm3] 2R_14812311_INS [dm6]	T	TC	3.172e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs
3R	25051598	3R_25051598_SNP [dm3] 3R_29225876_SNP [dm6]	A	G	3.177e^-4	0.979	SYNONYMOUS_CODING Brd8 DOWNSTREAM CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17998648	2R_17998648_SNP [dm3] 2R_22111143_SNP [dm6]	T	C	3.178e^-4	0.979	INTRON Vrp1
2R	5857207	2R_5857207_SNP [dm3] 2R_9969702_SNP [dm6]	G	T	3.192e^-4	0.979	INTRON Adam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18882805	3L_18882805_SNP [dm3] 3L_18889705_SNP [dm6]	T	C	3.194e^-4	0.979	INTRON CG3961	TF binding site BDTNP1_TFBS_dl
2R	12500478	2R_12500478_SNP [dm3] 2R_16612973_SNP [dm6]	C	T	3.195e^-4	0.979	INTRON CG5065	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14585496	3R_14585496_SNP [dm3] 3R_18759774_SNP [dm6]	G	A	3.201e^-4	0.979	SYNONYMOUS_CODING CG7720 UPSTREAM CG14299
3R	26943417	3R_26943417_SNP [dm3] 3R_31117695_SNP [dm6]	T	G	3.205e^-4	0.979	INTERGENIC
X	8375250	X_8375250_SNP [dm3] X_8481217_SNP [dm6]	C	T	3.220e^-4	0.979	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3L	13818196	3L_13818196_INS [dm3] 3L_13825096_INS [dm6]	A	ACTTTAAAGTTCTCAA...	3.224e^-4	0.979	INTERGENIC
2L	3007556	2L_3007556_SNP [dm3] 2L_3007556_SNP [dm6]	C	A	3.231e^-4	0.979	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13780106	2L_13780106_SNP [dm3] 2L_13780106_SNP [dm6]	C	G	3.243e^-4	0.979	UTR_5_PRIME CG9008 UPSTREAM p38b	TF binding site BDTNP1_TFBS_dl
2L	5541793	2L_5541793_SNP [dm3] 2L_5541793_SNP [dm6]	G	A	3.247e^-4	0.979	SYNONYMOUS_CODING Hel25E UPSTREAM Lam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	15562186	2L_15562186_SNP [dm3] 2L_15562186_SNP [dm6]	A	G	3.259e^-4	0.979	INTRON kek3
2L	3437430	2L_3437430_SNP [dm3] 2L_3437430_SNP [dm6]	A	T	3.260e^-4	0.979	INTERGENIC
2L	19028582	2L_19028582_DEL [dm3] 2L_19028582_DEL [dm6]	AGATATAGATGTTTA...	A	3.260e^-4	0.979	INTRON Side
3R	4673690	3R_4673690_SNP [dm3] 3R_8847968_SNP [dm6]	G	T	3.266e^-4	0.979	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17355404	2R_17355404_INS [dm3] 2R_21467899_INS [dm6]	T	TTCCCAAAAAT...	3.286e^-4	0.979	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20571338	X_20571338_SNP [dm3] X_20700311_SNP [dm6]	A	G	3.288e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs
3R	22611472	3R_22611472_SNP [dm3] 3R_26785750_SNP [dm6]	G	T	3.289e^-4	0.979	UTR_3_PRIME CG42790 DOWNSTREAM CG42790
2L	6763834	2L_6763834_SNP [dm3] 2L_6763834_SNP [dm6]	T	C	3.290e^-4	0.979	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	18888314	3L_18888314_SNP [dm3] 3L_18895214_SNP [dm6]	T	G	3.309e^-4	0.979	DOWNSTREAM snoRNA:Psi28S-2566 INTRON CG3902
2L	9203357	2L_9203357_SNP [dm3] 2L_9203357_SNP [dm6]	A	G	3.311e^-4	0.979	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6057562	X_6057562_SNP [dm3] X_6163529_SNP [dm6]	T	A	3.312e^-4	0.979	INTRON Ca-alpha1T
2L	5289100	2L_5289100_INS [dm3] 2L_5289100_INS [dm6]	A	AA	3.319e^-4	0.979	UTR_5_PRIME vri UPSTREAM CR44743 DOWNSTREAM CR44742	TF binding site BDTNP1_TFBS_dl
2L	15461717	2L_15461717_SNP [dm3] 2L_15461717_SNP [dm6]	A	T	3.320e^-4	0.979	INTERGENIC
X	6600640	X_6600640_INS [dm3] X_6706607_INS [dm6]	A	ACGGTA	3.340e^-4	0.979	INTRON CG14441	TF binding site BDTNP1_TFBS_dl
3L	5825641	3L_5825641_SNP [dm3] 3L_5832541_SNP [dm6]	T	A	3.345e^-4	0.979	INTRON vn	TF binding site mE1_TFBS_chinmo
3R	18621749	3R_18621749_SNP [dm3] 3R_22796027_SNP [dm6]	C	G	3.350e^-4	0.979	INTERGENIC
3R	11553436	3R_11553436_SNP [dm3] 3R_15727714_SNP [dm6]	T	G	3.357e^-4	0.979	INTERGENIC
3L	16502766	3L_16502766_SNP [dm3] 3L_16509666_SNP [dm6]	C	A	3.359e^-4	0.979	INTRON CG43373
2R	4224105	2R_4224105_SNP [dm3] 2R_8336600_SNP [dm6]	T	C	3.360e^-4	0.979	INTRON pdm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	6438883	3R_6438883_SNP [dm3] 3R_10613161_SNP [dm6]	A	G	3.360e^-4	0.979	UTR_5_PRIME hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6880972	3R_6880972_SNP [dm3] 3R_11055250_SNP [dm6]	A	G	3.361e^-4	0.979	INTERGENIC
2L	10188857	2L_10188857_SNP [dm3] 2L_10188857_SNP [dm6]	G	C	3.362e^-4	0.979	SYNONYMOUS_CODING Sur DOWNSTREAM CG31874
X	11221091	X_11221091_SNP [dm3] X_11327058_SNP [dm6]	G	A	3.366e^-4	0.979	INTRON CG1657	TF binding site BDTNP1_TFBS_dl
2R	5221235	2R_5221235_SNP [dm3] 2R_9333730_SNP [dm6]	A	C	3.367e^-4	0.979	INTRON CG13954 & 1 other
3L	3621231	3L_3621231_SNP [dm3] 3L_3621231_SNP [dm6]	T	G	3.373e^-4	0.979	UPSTREAM CG14974 INTERGENIC
2R	2665592	2R_2665592_SNP [dm3] 2R_6778087_SNP [dm6]	G	C	3.374e^-4	0.979	INTRON Epac	TF binding site mE1_TFBS_cad
2L	15811422	2L_15811422_SNP [dm3] 2L_15811422_SNP [dm6]	A	G	3.376e^-4	0.979	SYNONYMOUS_CODING CG42876	TF binding site BDTNP1_TFBS_da
3L	18883792	3L_18883792_SNP [dm3] 3L_18890692_SNP [dm6]	A	G	3.378e^-4	0.979	UPSTREAM CG3961 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	2471489	X_2471489_SNP [dm3] X_2577456_SNP [dm6]	T	C	3.382e^-4	0.979	DOWNSTREAM Pdfr INTRON Pdfr	TF binding site BDTNP1_TFBS_dl
2R	10608331	2R_10608331_SNP [dm3] 2R_14720826_SNP [dm6]	A	T	3.383e^-4	0.979	INTERGENIC
X	20156579	X_20156579_SNP [dm3] X_20285552_SNP [dm6]	T	A	3.383e^-4	0.979	INTERGENIC
3L	6888535	3L_6888535_SNP [dm3] 3L_6895435_SNP [dm6]	C	A	3.383e^-4	0.979	INTERGENIC
3R	5651260	3R_5651260_SNP [dm3] 3R_9825538_SNP [dm6]	A	T	3.388e^-4	0.979	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	9840893	3L_9840893_SNP [dm3] 3L_9847793_SNP [dm6]	T	A	3.388e^-4	0.979	INTRON RasGAP1
3R	20343797	3R_20343797_SNP [dm3] 3R_24518075_SNP [dm6]	T	A	3.389e^-4	0.979	UTR_3_PRIME CG13617 UPSTREAM Pp1alpha-96A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6294504	3R_6294504_SNP [dm3] 3R_10468782_SNP [dm6]	T	A	3.395e^-4	0.979	INTERGENIC
3L	7171766	3L_7171766_SNP [dm3] 3L_7178666_SNP [dm6]	C	A	3.399e^-4	0.979	INTRON Dscam2
2L	12926674	2L_12926674_SNP [dm3] 2L_12926674_SNP [dm6]	C	G	3.401e^-4	0.979	SYNONYMOUS_CODING ACXE
2R	18174083	2R_18174083_DEL [dm3] 2R_22286578_DEL [dm6]	TTGACTTTATAATTTGTAGA...	G	3.439e^-4	0.979	DOWNSTREAM dve INTERGENIC
2L	14363384	2L_14363384_SNP [dm3] 2L_14363384_SNP [dm6]	A	G	3.453e^-4	0.979	NON_SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18000378	2R_18000378_SNP [dm3] 2R_22112873_SNP [dm6]	G	A	3.454e^-4	0.979	UPSTREAM CG30280 & 1 other INTRON Vrp1
2R	16655428	2R_16655428_SNP [dm3] 2R_20767923_SNP [dm6]	G	C	3.457e^-4	0.979	DOWNSTREAM CR44665 INTERGENIC
3R	11866784	3R_11866784_SNP [dm3] 3R_16041062_SNP [dm6]	A	G	3.463e^-4	0.979	UTR_3_PRIME pnr DOWNSTREAM pnr	TF binding site mE1_TFBS_HSA mE1_TFBS_run
X	18998678	X_18998678_SNP [dm3] X_19104645_SNP [dm6]	G	A	3.471e^-4	0.979	INTERGENIC
X	22366872	X_22366872_SNP [dm3] X_22965036_SNP [dm6]	A	C	3.476e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6975601	2R_6975601_SNP [dm3] 2R_11088096_SNP [dm6]	C	A	3.490e^-4	0.979	UTR_3_PRIME CG43188 INTRON luna
3L	21388505	3L_21388505_SNP [dm3] 3L_21395405_SNP [dm6]	A	C	3.494e^-4	0.979	INTRON rgn
3R	11866709	3R_11866709_SNP [dm3] 3R_16040987_SNP [dm6]	T	C	3.495e^-4	0.979	UTR_3_PRIME pnr DOWNSTREAM pnr	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	3788482	3L_3788482_SNP [dm3] 3L_3788482_SNP [dm6]	C	T	3.495e^-4	0.979	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	18466129	2L_18466129_SNP [dm3] 2L_18466129_SNP [dm6]	T	G	3.498e^-4	0.979	INTRON let-7-C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16782062	2L_16782062_SNP [dm3] 2L_16782062_SNP [dm6]	G	A	3.504e^-4	0.979	INTRON Mhc	TF binding site mE1_TFBS_chinmo
2L	9202774	2L_9202774_SNP [dm3] 2L_9202774_SNP [dm6]	T	C	3.522e^-4	0.979	INTRON tai
2R	10687961	2R_10687961_DEL [dm3] 2R_14800456_DEL [dm6]	GG	G	3.533e^-4	0.979	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
X	22412661	X_22412661_SNP [dm3] X_23010825_SNP [dm6]	C	T	3.537e^-4	0.979	UTR_5_PRIME FucTC UPSTREAM CR45010	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	25540644	3R_25540644_SNP [dm3] 3R_29714922_SNP [dm6]	C	A	3.545e^-4	0.979	NON_SYNONYMOUS_CODING Obp99d DOWNSTREAM Dup99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	18907747	3L_18907747_SNP [dm3] 3L_18914647_SNP [dm6]	C	T	3.553e^-4	0.979	UPSTREAM CG14077 INTERGENIC
3R	20961236	3R_20961236_SNP [dm3] 3R_25135514_SNP [dm6]	A	T	3.553e^-4	0.979	INTRON Bili
2L	15098062	2L_15098062_SNP [dm3] 2L_15098062_SNP [dm6]	T	C	3.555e^-4	0.979	INTERGENIC
3R	25075196	3R_25075196_SNP [dm3] 3R_29249474_SNP [dm6]	G	A	3.555e^-4	0.979	UTR_5_PRIME SP1029 UPSTREAM SP1029 INTRON SP1029
3R	14883999	3R_14883999_INS [dm3] 3R_19058277_INS [dm6]	C	CAGTCATTC	3.556e^-4	0.979	INTRON cdi	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7504238	2R_7504238_INS [dm3] 2R_11616733_INS [dm6]	T	TAAAA	3.575e^-4	0.979	UPSTREAM tou DOWNSTREAM Egm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_Trl
3L	919591	3L_919591_DEL [dm3] 3L_919591_DEL [dm6]	CGT	C	3.577e^-4	0.979	INTRON Glut1
2L	13030566	2L_13030566_SNP [dm3] 2L_13030566_SNP [dm6]	C	A	3.582e^-4	0.979	SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6111651	X_6111651_SNP [dm3] X_6217618_SNP [dm6]	G	A	3.584e^-4	0.979	SYNONYMOUS_CODING Btd
3L	13129512	3L_13129512_SNP [dm3] 3L_13136412_SNP [dm6]	A	T	3.585e^-4	0.979	INTRON CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20343791	3R_20343791_SNP [dm3] 3R_24518069_SNP [dm6]	T	A	3.586e^-4	0.979	UTR_3_PRIME CG13617 UPSTREAM Pp1alpha-96A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15471942	3L_15471942_SNP [dm3] 3L_15478842_SNP [dm6]	A	G	3.590e^-4	0.979	INTERGENIC
2R	16655402	2R_16655402_SNP [dm3] 2R_20767897_SNP [dm6]	T	G	3.590e^-4	0.979	DOWNSTREAM CR44665 INTERGENIC
X	21961450	X_21961450_SNP [dm3] X_22559614_SNP [dm6]	A	T	3.590e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3R	24405998	3R_24405998_SNP [dm3] 3R_28580276_SNP [dm6]	G	T	3.597e^-4	0.979	DOWNSTREAM fkh INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16915111	2L_16915111_SNP [dm3] 2L_16915111_SNP [dm6]	C	G	3.599e^-4	0.979	SYNONYMOUS_CODING tweek
2L	10643593	2L_10643593_SNP [dm3] 2L_10643593_SNP [dm6]	C	T	3.601e^-4	0.979	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
X	19128335	X_19128335_SNP [dm3] X_19234302_SNP [dm6]	C	G	3.603e^-4	0.979	SYNONYMOUS_CODING CG7884	TF binding site mE1_TFBS_chinmo
3L	13290752	3L_13290752_SNP [dm3] 3L_13297652_SNP [dm6]	A	G	3.610e^-4	0.979	UPSTREAM Sfp70A4 & 1 other DOWNSTREAM CR45253 EXON CR45255
3R	13303205	3R_13303205_SNP [dm3] 3R_17477483_SNP [dm6]	T	A	3.616e^-4	0.979	INTRON Dscam3
3L	4080538	3L_4080538_SNP [dm3] 3L_4080538_SNP [dm6]	C	A	3.619e^-4	0.979	INTRON Gad1
2L	16244390	2L_16244390_SNP [dm3] 2L_16244390_SNP [dm6]	T	C	3.619e^-4	0.979	SYNONYMOUS_CODING CG42818
2L	5410656	2L_5410656_SNP [dm3] 2L_5410656_SNP [dm6]	C	T	3.623e^-4	0.979	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13643071	2R_13643071_SNP [dm3] 2R_17755566_SNP [dm6]	A	C	3.625e^-4	0.979	SYNONYMOUS_CODING CG6385	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19496269	3L_19496269_SNP [dm3] 3L_19503169_SNP [dm6]	G	A	3.626e^-4	0.979	INTRON CG9452
2R	713156	2R_713156_SNP [dm3] 2R_4825651_SNP [dm6]	G	A	3.630e^-4	0.979	INTERGENIC
2R	12500452	2R_12500452_SNP [dm3] 2R_16612947_SNP [dm6]	T	A	3.634e^-4	0.979	INTRON CG5065	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4110330	2L_4110330_SNP [dm3] 2L_4110330_SNP [dm6]	C	A	3.637e^-4	0.979	INTRON ed
3L	4932564	3L_4932564_SNP [dm3] 3L_4932564_SNP [dm6]	G	A	3.638e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs
2L	14344300	2L_14344300_SNP [dm3] 2L_14344300_SNP [dm6]	A	C	3.640e^-4	0.979	NON_SYNONYMOUS_CODING CG33090
X	2245699	X_2245699_SNP [dm3] X_2351666_SNP [dm6]	G	A	3.640e^-4	0.979	INTRON ptr
2L	4380896	2L_4380896_SNP [dm3] 2L_4380896_SNP [dm6]	C	T	3.655e^-4	0.979	NON_SYNONYMOUS_CODING CG17612 DOWNSTREAM Traf4	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	5447933	2L_5447933_SNP [dm3] 2L_5447933_SNP [dm6]	T	C	3.665e^-4	0.979	INTERGENIC
2R	10892087	2R_10892087_SNP [dm3] 2R_15004582_SNP [dm6]	G	A	3.667e^-4	0.979	INTERGENIC
2R	20589914	2R_20589914_SNP [dm3] 2R_24702391_SNP [dm6]	A	T	3.670e^-4	0.979	INTRON Mid1
2L	17491489	2L_17491489_SNP [dm3] 2L_17491489_SNP [dm6]	A	G	3.683e^-4	0.979	INTRON qua
2L	17491491	2L_17491491_DEL [dm3] 2L_17491491_DEL [dm6]	TTTAA	G	3.683e^-4	0.979	INTRON qua
2L	7155108	2L_7155108_SNP [dm3] 2L_7155108_SNP [dm6]	C	G	3.709e^-4	0.979	INTRON Pvf3	TF binding site mE1_TFBS_sens
2R	15463531	2R_15463531_DEL [dm3] 2R_19576026_DEL [dm6]	CC	C	3.714e^-4	0.979	INTRON sm
3L	920514	3L_920514_SNP [dm3] 3L_920514_SNP [dm6]	T	C	3.719e^-4	0.979	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8312930	3L_8312930_SNP [dm3] 3L_8319830_SNP [dm6]	C	T	3.722e^-4	0.979	UPSTREAM CG43059 & 1 other INTERGENIC
2L	15093259	2L_15093259_SNP [dm3] 2L_15093259_SNP [dm6]	C	A	3.723e^-4	0.979	INTRON CG15270
X	7060724	X_7060724_SNP [dm3] X_7166691_SNP [dm6]	C	T	3.725e^-4	0.979	INTRON CG9650 EXON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	89612	2R_89612_SNP [dm3] 2R_4202107_SNP [dm6]	G	T	3.730e^-4	0.979	INTERGENIC
2L	7378036	2L_7378036_SNP [dm3] 2L_7378036_SNP [dm6]	A	G	3.733e^-4	0.979	DOWNSTREAM Wnt10 INTRON ninaC
3R	15294749	3R_15294749_SNP [dm3] 3R_19469027_SNP [dm6]	G	T	3.739e^-4	0.979	INTRON Dys	TF binding site mE1_TFBS_inv
X	4438551	X_4438551_SNP [dm3] X_4544518_SNP [dm6]	T	C	3.739e^-4	0.979	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9686649	3L_9686649_SNP [dm3] 3L_9693549_SNP [dm6]	G	A	3.740e^-4	0.979	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	6736137	2R_6736137_SNP [dm3] 2R_10848632_SNP [dm6]	C	T	3.741e^-4	0.979	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad
2L	3268235	2L_3268235_SNP [dm3] 2L_3268235_SNP [dm6]	G	A	3.743e^-4	0.979	UPSTREAM CR44484 INTERGENIC
3R	9952572	3R_9952572_SNP [dm3] 3R_14126850_SNP [dm6]	C	T	3.744e^-4	0.979	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13303207	3R_13303207_SNP [dm3] 3R_17477485_SNP [dm6]	C	G	3.761e^-4	0.979	INTRON Dscam3
3R	3141467	3R_3141467_SNP [dm3] 3R_7315745_SNP [dm6]	A	T	3.762e^-4	0.979	UTR_3_PRIME CG10029
3R	12086200	3R_12086200_SNP [dm3] 3R_16260478_SNP [dm6]	C	A	3.764e^-4	0.979	DOWNSTREAM tara & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
X	6785082	X_6785082_SNP [dm3] X_6891049_SNP [dm6]	A	G	3.764e^-4	0.979	INTERGENIC
2R	12960971	2R_12960971_SNP [dm3] 2R_17073466_SNP [dm6]	T	C	3.765e^-4	0.979	UPSTREAM CG30460 INTRON CG30460
3R	6863579	3R_6863579_INS [dm3] 3R_11037857_INS [dm6]	G	GAGA	3.766e^-4	0.979	INTRON CG34114
2L	15840568	2L_15840568_SNP [dm3] 2L_15840568_SNP [dm6]	C	T	3.766e^-4	0.979	DOWNSTREAM CR45694 INTERGENIC
2L	13135093	2L_13135093_SNP [dm3] 2L_13135093_SNP [dm6]	C	A	3.773e^-4	0.979	DOWNSTREAM CG5122 INTERGENIC
3R	7497405	3R_7497405_SNP [dm3] 3R_11671683_SNP [dm6]	A	C	3.783e^-4	0.979	INTRON CG42327
3L	10757781	3L_10757781_SNP [dm3] 3L_10764681_SNP [dm6]	T	A	3.784e^-4	0.979	INTERGENIC
3L	13290743	3L_13290743_SNP [dm3] 3L_13297643_SNP [dm6]	A	T	3.788e^-4	0.979	UPSTREAM Sfp70A4 & 1 other DOWNSTREAM CR45255 & 1 other INTERGENIC
2R	4727426	2R_4727426_SNP [dm3] 2R_8839921_SNP [dm6]	T	A	3.792e^-4	0.979	INTRON sns
3R	23472049	3R_23472049_SNP [dm3] 3R_27646327_SNP [dm6]	G	C	3.804e^-4	0.979	INTRON tau	TF binding site BDTNP1_TFBS_prd
3L	18837004	3L_18837004_SNP [dm3] 3L_18843904_SNP [dm6]	G	C	3.821e^-4	0.979	INTRON Indy
X	2544520	X_2544520_SNP [dm3] X_2650487_SNP [dm6]	T	A	3.846e^-4	0.979	INTRON sgg
2L	2693939	2L_2693939_SNP [dm3] 2L_2693939_SNP [dm6]	T	C	3.858e^-4	0.979	INTRON CG31690
3L	18888684	3L_18888684_SNP [dm3] 3L_18895584_SNP [dm6]	G	T	3.859e^-4	0.979	DOWNSTREAM snoRNA:Psi28S-2566 INTRON CG3902
2L	1686676	2L_1686676_SNP [dm3] 2L_1686676_SNP [dm6]	A	T	3.862e^-4	0.979	INTRON chinmo
3L	4165736	3L_4165736_SNP [dm3] 3L_4165736_SNP [dm6]	A	C	3.864e^-4	0.979	INTRON mas	TF binding site BDTNP1_TFBS_dl
2L	11417675	2L_11417675_SNP [dm3] 2L_11417675_SNP [dm6]	T	G	3.873e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13249593	3L_13249593_INS [dm3] 3L_13256493_INS [dm6]	C	CCTTC	3.873e^-4	0.979	INTRON caps
2R	8115551	2R_8115551_SNP [dm3] 2R_12228046_SNP [dm6]	A	T	3.878e^-4	0.979	INTRON CG8854
3R	23294921	3R_23294921_SNP [dm3] 3R_27469199_SNP [dm6]	G	C	3.880e^-4	0.979	INTERGENIC
2R	7322207	2R_7322207_SNP [dm3] 2R_11434702_SNP [dm6]	A	T	3.891e^-4	0.979	INTERGENIC
3R	17986856	3R_17986856_INS [dm3] 3R_22161134_INS [dm6]	A	AAGC	3.892e^-4	0.979	INTRON SKIP
3R	6349271	3R_6349271_SNP [dm3] 3R_10523549_SNP [dm6]	C	A	3.898e^-4	0.979	INTRON hth
2L	17491412	2L_17491412_SNP [dm3] 2L_17491412_SNP [dm6]	G	A	3.904e^-4	0.979	INTRON qua
2R	8612646	2R_8612646_SNP [dm3] 2R_12725141_SNP [dm6]	T	C	3.943e^-4	0.979	INTRON CG42663
3R	15117319	3R_15117319_SNP [dm3] 3R_19291597_SNP [dm6]	T	C	3.945e^-4	0.979	INTERGENIC
3L	16502776	3L_16502776_SNP [dm3] 3L_16509676_SNP [dm6]	C	T	3.947e^-4	0.979	INTRON CG43373
2L	4103989	2L_4103989_SNP [dm3] 2L_4103989_SNP [dm6]	T	A	3.949e^-4	0.979	INTRON ed
3L	13251449	3L_13251449_SNP [dm3] 3L_13258349_SNP [dm6]	A	T	3.952e^-4	0.979	INTRON caps
X	16750651	X_16750651_SNP [dm3] X_16856618_SNP [dm6]	C	T	3.955e^-4	0.979	INTRON CG13003	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17405209	2R_17405209_SNP [dm3] 2R_21517704_SNP [dm6]	C	T	3.962e^-4	0.979	SYNONYMOUS_CODING CG10494 DOWNSTREAM MESK2	TF binding site mE1_TFBS_HSA
3R	25282171	3R_25282171_SNP [dm3] 3R_29456449_SNP [dm6]	T	A	3.964e^-4	0.979	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10383450	3L_10383450_SNP [dm3] 3L_10390350_SNP [dm6]	G	A	3.968e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	518661	3R_518661_DEL [dm3] 3R_4692939_DEL [dm6]	TAA	T	3.969e^-4	0.979	INTRON CG43427
3L	18881818	3L_18881818_SNP [dm3] 3L_18888718_SNP [dm6]	A	G	3.969e^-4	0.979	INTRON CG3961
3R	16507040	3R_16507040_SNP [dm3] 3R_20681318_SNP [dm6]	G	A	3.971e^-4	0.979	INTERGENIC
2L	4733337	2L_4733337_SNP [dm3] 2L_4733337_SNP [dm6]	T	A	3.974e^-4	0.979	NON_SYNONYMOUS_CODING CG15631	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27044280	3R_27044280_SNP [dm3] 3R_31218558_SNP [dm6]	A	G	3.979e^-4	0.979	UPSTREAM RNaseP:RNA DOWNSTREAM mir-4949 INTRON CG1746	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	18886088	3L_18886088_SNP [dm3] 3L_18892988_SNP [dm6]	A	G	3.984e^-4	0.979	NON_SYNONYMOUS_CODING NijB DOWNSTREAM CG3902	TF binding site mE1_TFBS_cad
2L	9203366	2L_9203366_SNP [dm3] 2L_9203366_SNP [dm6]	A	G	4.004e^-4	0.979	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	19046929	X_19046929_SNP [dm3] X_19152896_SNP [dm6]	T	C	4.004e^-4	0.979	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
X	15558954	X_15558954_INS [dm3] X_15664921_INS [dm6]	T	TAAGTTTATTACTTTTGTC...	4.007e^-4	0.979	INTRON CR43299 EXON CR43299
3L	6678690	3L_6678690_SNP [dm3] 3L_6685590_SNP [dm6]	T	A	4.008e^-4	0.979	INTERGENIC
2R	12909983	2R_12909983_SNP [dm3] 2R_17022478_SNP [dm6]	G	T	4.011e^-4	0.979	SYNONYMOUS_CODING Ark	TF binding site mE1_TFBS_sens
2R	11081503	2R_11081503_SNP [dm3] 2R_15193998_SNP [dm6]	G	A	4.019e^-4	0.979	UTR_3_PRIME CG43829 UPSTREAM Sfp51E
2R	7908083	2R_7908083_SNP [dm3] 2R_12020578_SNP [dm6]	A	T	4.032e^-4	0.979	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
X	1152768	X_1152768_SNP [dm3] X_1258735_SNP [dm6]	C	T	4.035e^-4	0.979	INTRON Atf3
2L	10643492	2L_10643492_SNP [dm3] 2L_10643492_SNP [dm6]	T	G	4.036e^-4	0.979	UTR_3_PRIME CG31872 UPSTREAM CG18284
2R	17355328	2R_17355328_DEL [dm3] 2R_21467823_DEL [dm6]	TTAAGCAAGGTGTTTAAGAT...	T	4.044e^-4	0.979	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355379	2R_17355379_SNP [dm3] 2R_21467874_SNP [dm6]	T	C	4.044e^-4	0.979	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355385	2R_17355385_DEL [dm3] 2R_21467880_DEL [dm6]	AT	G	4.044e^-4	0.979	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355390	2R_17355390_SNP [dm3] 2R_21467885_SNP [dm6]	T	A	4.044e^-4	0.979	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355391	2R_17355391_SNP [dm3] 2R_21467886_SNP [dm6]	C	A	4.044e^-4	0.979	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355414	2R_17355414_DEL [dm3] 2R_21467909_DEL [dm6]	TTTCC	T	4.044e^-4	0.979	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355421	2R_17355421_SNP [dm3] 2R_21467916_SNP [dm6]	A	T	4.044e^-4	0.979	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355438	2R_17355438_MNP [dm3] 2R_21467933_MNP [dm6]	GCCG	ATGA	4.044e^-4	0.979	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9004040	3R_9004040_SNP [dm3] 3R_13178318_SNP [dm6]	A	G	4.055e^-4	0.979	INTERGENIC
3R	22004078	3R_22004078_SNP [dm3] 3R_26178356_SNP [dm6]	A	G	4.067e^-4	0.979	INTRON CG31323
2R	18332689	2R_18332689_SNP [dm3] 2R_22445184_SNP [dm6]	T	A	4.071e^-4	0.979	INTERGENIC
X	10078541	X_10078541_SNP [dm3] X_10184508_SNP [dm6]	C	G	4.071e^-4	0.979	INTRON CG43902 & 1 other
2R	15326876	2R_15326876_SNP [dm3] 2R_19439371_SNP [dm6]	G	A	4.076e^-4	0.979	SPLICE_SITE_REGION Spt5 INTRON Spt5
3R	14589503	3R_14589503_SNP [dm3] 3R_18763781_SNP [dm6]	G	A	4.083e^-4	0.979	INTRON CG7720
3R	6854684	3R_6854684_SNP [dm3] 3R_11028962_SNP [dm6]	T	C	4.083e^-4	0.979	INTRON CG34114
2L	11417684	2L_11417684_SNP [dm3] 2L_11417684_SNP [dm6]	C	T	4.085e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	18657457	2L_18657457_SNP [dm3] 2L_18657457_SNP [dm6]	T	A	4.091e^-4	0.979	INTRON MESR3
3L	1278708	3L_1278708_SNP [dm3] 3L_1278708_SNP [dm6]	C	T	4.093e^-4	0.979	INTRON CG32333
2L	10076776	2L_10076776_SNP [dm3] 2L_10076776_SNP [dm6]	C	A	4.093e^-4	0.979	INTRON CG44153	TF binding site mE1_TFBS_cad
3L	4146277	3L_4146277_SNP [dm3] 3L_4146277_SNP [dm6]	C	A	4.096e^-4	0.979	DOWNSTREAM CG32260 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13179385	2R_13179385_SNP [dm3] 2R_17291880_SNP [dm6]	A	C	4.096e^-4	0.979	INTRON mbl
2L	8280565	2L_8280565_SNP [dm3] 2L_8280565_SNP [dm6]	T	A	4.097e^-4	0.979	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
X	15153928	X_15153928_SNP [dm3] X_15259895_SNP [dm6]	G	T	4.100e^-4	0.979	INTERGENIC
3R	8997221	3R_8997221_SNP [dm3] 3R_13171499_SNP [dm6]	T	C	4.104e^-4	0.979	INTERGENIC
3R	3351354	3R_3351354_SNP [dm3] 3R_7525632_SNP [dm6]	C	T	4.111e^-4	0.979	NON_SYNONYMOUS_CODING alpha-Est6 UPSTREAM alpha-Est4aPsi
2R	11799141	2R_11799141_SNP [dm3] 2R_15911636_SNP [dm6]	T	A	4.113e^-4	0.979	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15291153	3R_15291153_SNP [dm3] 3R_19465431_SNP [dm6]	A	T	4.118e^-4	0.979	INTRON Dys	TF binding site BDTNP1_TFBS_twi
2L	12617975	2L_12617975_SNP [dm3] 2L_12617975_SNP [dm6]	A	G	4.127e^-4	0.979	UPSTREAM nub INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1362694	3L_1362694_SNP [dm3] 3L_1362694_SNP [dm6]	G	A	4.133e^-4	0.979	INTRON Ptp61F
3L	13339531	3L_13339531_SNP [dm3] 3L_13346431_SNP [dm6]	G	T	4.140e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14602690	2R_14602690_SNP [dm3] 2R_18715185_SNP [dm6]	C	A	4.143e^-4	0.979	INTERGENIC
2L	6931060	2L_6931060_SNP [dm3] 2L_6931060_SNP [dm6]	A	T	4.160e^-4	0.979	UTR_3_PRIME Hrb27C
2L	8270284	2L_8270284_SNP [dm3] 2L_8270284_SNP [dm6]	A	G	4.165e^-4	0.979	INTRON Btk29A
2L	4106510	2L_4106510_SNP [dm3] 2L_4106510_SNP [dm6]	C	T	4.176e^-4	0.979	INTRON ed
2L	4108997	2L_4108997_SNP [dm3] 2L_4108997_SNP [dm6]	A	T	4.187e^-4	0.979	INTRON ed
2L	2158913	2L_2158913_SNP [dm3] 2L_2158913_SNP [dm6]	C	T	4.193e^-4	0.979	NON_SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2682347	2R_2682347_SNP [dm3] 2R_6794842_SNP [dm6]	C	T	4.202e^-4	0.979	INTRON Epac	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18950162	2R_18950162_SNP [dm3] 2R_23062639_SNP [dm6]	A	G	4.206e^-4	0.979	UPSTREAM l_2_06496 DOWNSTREAM CG9890 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14363563	2L_14363563_SNP [dm3] 2L_14363563_SNP [dm6]	G	A	4.208e^-4	0.979	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3545987	3L_3545987_SNP [dm3] 3L_3545987_SNP [dm6]	C	A	4.213e^-4	0.979	UTR_5_PRIME Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb mE1_TFBS_Trl
3R	19534352	3R_19534352_SNP [dm3] 3R_23708630_SNP [dm6]	A	C	4.216e^-4	0.979	DOWNSTREAM CG31414 INTERGENIC
3L	11326550	3L_11326550_SNP [dm3] 3L_11333450_SNP [dm6]	G	A	4.218e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11566141	X_11566141_DEL [dm3] X_11672108_DEL [dm6]	TCC	AA	4.219e^-4	0.979	INTRON Ptp10D
X	13996631	X_13996631_SNP [dm3] X_14102598_SNP [dm6]	A	C	4.228e^-4	0.979	DOWNSTREAM tRNA:S4:12Ee INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13369384	3R_13369384_SNP [dm3] 3R_17543662_SNP [dm6]	G	T	4.241e^-4	0.979	DOWNSTREAM SF1 INTRON SF1
3L	5932662	3L_5932662_DEL [dm3] 3L_5939562_DEL [dm6]	TA	T	4.243e^-4	0.979	INTRON CG33993
2L	11964648	2L_11964648_SNP [dm3] 2L_11964648_SNP [dm6]	T	G	4.249e^-4	0.979	INTRON CR43314
3L	20085186	3L_20085186_SNP [dm3] 3L_20092086_SNP [dm6]	C	A	4.250e^-4	0.979	INTERGENIC
X	2276809	X_2276809_SNP [dm3] X_2382776_SNP [dm6]	C	T	4.260e^-4	0.979	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1199921	X_1199921_DEL [dm3] X_1305888_DEL [dm6]	GG	G	4.263e^-4	0.979	INTRON DAAM
2L	8732924	2L_8732924_INS [dm3] 2L_8732924_INS [dm6]	T	TCT	4.265e^-4	0.979	INTRON raw
3R	22022876	3R_22022876_SNP [dm3] 3R_26197154_SNP [dm6]	A	T	4.266e^-4	0.979	INTRON CR44320
3R	22022877	3R_22022877_SNP [dm3] 3R_26197155_SNP [dm6]	C	T	4.266e^-4	0.979	INTRON CR44320
3L	14016611	3L_14016611_SNP [dm3] 3L_14023511_SNP [dm6]	A	T	4.268e^-4	0.979	INTRON ptip	TF binding site mE1_TFBS_chinmo
2L	3432001	2L_3432001_SNP [dm3] 2L_3432001_SNP [dm6]	A	T	4.278e^-4	0.979	INTERGENIC
2R	19022474	2R_19022474_SNP [dm3] 2R_23134951_SNP [dm6]	T	C	4.284e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10608366	2R_10608366_SNP [dm3] 2R_14720861_SNP [dm6]	A	T	4.285e^-4	0.979	INTERGENIC
2L	6931074	2L_6931074_SNP [dm3] 2L_6931074_SNP [dm6]	A	G	4.289e^-4	0.979	UTR_3_PRIME Hrb27C
3L	13250150	3L_13250150_SNP [dm3] 3L_13257050_SNP [dm6]	C	G	4.297e^-4	0.979	INTRON caps
2R	6686833	2R_6686833_INS [dm3] 2R_10799328_INS [dm6]	A	ATA	4.299e^-4	0.979	UPSTREAM CG33144 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10290256	3L_10290256_SNP [dm3] 3L_10297156_SNP [dm6]	G	T	4.302e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	6321516	2L_6321516_SNP [dm3] 2L_6321516_SNP [dm6]	G	A	4.310e^-4	0.979	INTRON Ddr
2L	2675918	2L_2675918_SNP [dm3] 2L_2675918_SNP [dm6]	C	G	4.311e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13879222	3L_13879222_SNP [dm3] 3L_13886122_SNP [dm6]	A	T	4.311e^-4	0.979	INTRON dysc
X	18270979	X_18270979_SNP [dm3] X_18376946_SNP [dm6]	C	T	4.311e^-4	0.979	UTR_3_PRIME CrebB DOWNSTREAM por & 1 other
2R	20217667	2R_20217667_SNP [dm3] 2R_24330144_SNP [dm6]	G	A	4.317e^-4	0.979	EXON CR44810	TF binding site mE1_TFBS_Trl
X	22411672	X_22411672_SNP [dm3] X_23009836_SNP [dm6]	C	T	4.321e^-4	0.979	DOWNSTREAM CR45009 INTRON FucTC	TF binding site BDTNP1_TFBS_dl
2L	20389634	2L_20389634_SNP [dm3] 2L_20389634_SNP [dm6]	T	C	4.326e^-4	0.979	INTRON CG10947
X	8272005	X_8272005_DEL [dm3] X_8377972_DEL [dm6]	AATCGTTTGAGCTCAGTCAA...	A	4.332e^-4	0.979	INTERGENIC
3L	4161919	3L_4161919_SNP [dm3] 3L_4161919_SNP [dm6]	G	C	4.340e^-4	0.979	UTR_3_PRIME mas UPSTREAM nab	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2598535	2L_2598535_SNP [dm3] 2L_2598535_SNP [dm6]	T	A	4.342e^-4	0.979	DOWNSTREAM CR44790 INTERGENIC
2R	17308201	2R_17308201_SNP [dm3] 2R_21420696_SNP [dm6]	C	A	4.356e^-4	0.979	INTRON Sdc
X	13127313	X_13127313_SNP [dm3] X_13233280_SNP [dm6]	G	A	4.360e^-4	0.979	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21762837	3L_21762837_SNP [dm3] 3L_21769737_SNP [dm6]	G	A	4.361e^-4	0.979	UPSTREAM CG7370 INTRON Syn1 & 1 other	TF binding site mE1_TFBS_Trl
3R	25473562	3R_25473562_SNP [dm3] 3R_29647840_SNP [dm6]	G	C	4.362e^-4	0.979	INTRON Dop1R2
3L	10510145	3L_10510145_SNP [dm3] 3L_10517045_SNP [dm6]	C	A	4.368e^-4	0.979	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18622459	2R_18622459_INS [dm3] 2R_22734954_INS [dm6]	C	CTACTC	4.372e^-4	0.979	INTRON jbug
2L	4109984	2L_4109984_SNP [dm3] 2L_4109984_SNP [dm6]	G	T	4.373e^-4	0.979	INTRON ed
2R	8612640	2R_8612640_SNP [dm3] 2R_12725135_SNP [dm6]	A	C	4.379e^-4	0.979	INTRON CG42663
3R	12146238	3R_12146238_SNP [dm3] 3R_16320516_SNP [dm6]	C	T	4.394e^-4	0.979	UPSTREAM tRNA:F2:89BC INTRON Sulf1
3R	25770183	3R_25770183_SNP [dm3] 3R_29944461_SNP [dm6]	C	T	4.396e^-4	0.979	SYNONYMOUS_CODING CG15523
3L	12718139	3L_12718139_SNP [dm3] 3L_12725039_SNP [dm6]	G	A	4.400e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8612634	2R_8612634_SNP [dm3] 2R_12725129_SNP [dm6]	G	T	4.400e^-4	0.979	INTRON CG42663
X	5450795	X_5450795_DEL [dm3] X_5556762_DEL [dm6]	ATCAGT	G	4.410e^-4	0.979	INTRON Vsx2
3L	18891912	3L_18891912_SNP [dm3] 3L_18898812_SNP [dm6]	A	G	4.420e^-4	0.979	UPSTREAM RpL26 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	13291244	X_13291244_SNP [dm3] X_13397211_SNP [dm6]	C	A	4.439e^-4	0.979	UTR_5_PRIME CG1673 DOWNSTREAM CR44621	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16724492	X_16724492_INS [dm3] X_16830459_INS [dm6]	T	TATTT	4.447e^-4	0.979	INTRON CG13004	TF binding site BDTNP1_TFBS_twi
3R	11350662	3R_11350662_SNP [dm3] 3R_15524940_SNP [dm6]	T	C	4.450e^-4	0.979	INTERGENIC
2R	11096103	2R_11096103_SNP [dm3] 2R_15208598_SNP [dm6]	T	C	4.454e^-4	0.979	SYNONYMOUS_CODING Ir51b INTRON row	TF binding site mE1_TFBS_sens
2L	9257596	2L_9257596_SNP [dm3] 2L_9257596_SNP [dm6]	A	C	4.455e^-4	0.979	INTRON Ggamma30A
3L	3830421	3L_3830421_SNP [dm3] 3L_3830421_SNP [dm6]	A	C	4.479e^-4	0.979	INTRON enc
2R	7908092	2R_7908092_SNP [dm3] 2R_12020587_SNP [dm6]	G	A	4.480e^-4	0.979	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3R	15342867	3R_15342867_SNP [dm3] 3R_19517145_SNP [dm6]	T	C	4.484e^-4	0.979	INTRON Dys
3L	18891157	3L_18891157_SNP [dm3] 3L_18898057_SNP [dm6]	G	A	4.495e^-4	0.979	SPLICE_SITE_REGION CG3902 UPSTREAM RpL26 INTRON CG3902
X	2244424	X_2244424_SNP [dm3] X_2350391_SNP [dm6]	C	T	4.519e^-4	0.979	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3R	15168648	3R_15168648_SNP [dm3] 3R_19342926_SNP [dm6]	T	A	4.545e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	7123502	3L_7123502_SNP [dm3] 3L_7130402_SNP [dm6]	C	T	4.550e^-4	0.979	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	8917168	3L_8917168_SNP [dm3] 3L_8924068_SNP [dm6]	A	T	4.557e^-4	0.979	INTRON Tsp66E
3L	15282736	3L_15282736_SNP [dm3] 3L_15289636_SNP [dm6]	A	G	4.566e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15746092	2L_15746092_SNP [dm3] 2L_15746092_SNP [dm6]	A	C	4.567e^-4	0.979	UPSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	11867311	2L_11867311_SNP [dm3] 2L_11867311_SNP [dm6]	C	G	4.569e^-4	0.979	INTRON Pde1c
2R	6995715	2R_6995715_SNP [dm3] 2R_11108210_SNP [dm6]	G	C	4.570e^-4	0.979	INTRON luna	TF binding site mE1_TFBS_Trl
3R	21995541	3R_21995541_SNP [dm3] 3R_26169819_SNP [dm6]	A	C	4.574e^-4	0.979	INTERGENIC
2R	19862311	2R_19862311_SNP [dm3] 2R_23974788_SNP [dm6]	C	T	4.578e^-4	0.979	DOWNSTREAM Gadd34 INTRON mr
X	16874954	X_16874954_DEL [dm3] X_16980921_DEL [dm6]	GCCGCTGCTGG...	C	4.580e^-4	0.979	INTRON CG45002
3L	4159923	3L_4159923_SNP [dm3] 3L_4159923_SNP [dm6]	A	G	4.592e^-4	0.979	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	23474696	3R_23474696_SNP [dm3] 3R_27648974_SNP [dm6]	A	T	4.594e^-4	0.979	NON_SYNONYMOUS_CODING tau INTRON tau
3L	7120489	3L_7120489_SNP [dm3] 3L_7127389_SNP [dm6]	T	A	4.608e^-4	0.979	DOWNSTREAM CG8629 INTRON BBS1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19259424	X_19259424_SNP [dm3] X_19365391_SNP [dm6]	G	A	4.609e^-4	0.979	INTRON kek5
3R	20275217	3R_20275217_SNP [dm3] 3R_24449495_SNP [dm6]	A	G	4.610e^-4	0.979	INTRON nAChRalpha1
3L	15692905	3L_15692905_SNP [dm3] 3L_15699805_SNP [dm6]	A	T	4.612e^-4	0.979	UTR_5_PRIME comm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8126974	3L_8126974_SNP [dm3] 3L_8133874_SNP [dm6]	T	C	4.612e^-4	0.979	NON_SYNONYMOUS_CODING CG7504
3R	10576423	3R_10576423_DEL [dm3] 3R_14750701_DEL [dm6]	AATAACATTAAATAATGTTT...	T	4.619e^-4	0.979	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
3L	8860421	3L_8860421_SNP [dm3] 3L_8867321_SNP [dm6]	G	A	4.619e^-4	0.979	INTRON dally
3R	6326059	3R_6326059_SNP [dm3] 3R_10500337_SNP [dm6]	T	C	4.625e^-4	0.979	INTERGENIC
3L	18848798	3L_18848798_SNP [dm3] 3L_18855698_SNP [dm6]	A	T	4.626e^-4	0.979	INTERGENIC
3R	21275903	3R_21275903_SNP [dm3] 3R_25450181_SNP [dm6]	A	T	4.637e^-4	0.979	INTRON Fur1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5131848	2R_5131848_SNP [dm3] 2R_9244343_SNP [dm6]	C	A	4.640e^-4	0.979	UTR_3_PRIME Cyp4p3 INTRON hig
X	20325964	X_20325964_SNP [dm3] X_20454937_SNP [dm6]	A	G	4.645e^-4	0.979	INTRON CG32506
3L	11304540	3L_11304540_SNP [dm3] 3L_11311440_SNP [dm6]	G	C	4.646e^-4	0.979	UPSTREAM CG7573 INTERGENIC
3R	6880857	3R_6880857_SNP [dm3] 3R_11055135_SNP [dm6]	T	A	4.654e^-4	0.979	INTERGENIC
3L	12731476	3L_12731476_SNP [dm3] 3L_12738376_SNP [dm6]	C	T	4.660e^-4	0.979	SYNONYMOUS_CODING Ptp69D
3R	15317615	3R_15317615_DEL [dm3] 3R_19491893_DEL [dm6]	AGCGATAAACA...	A	4.674e^-4	0.979	UPSTREAM CG15025 INTRON Dys
3L	2602196	3L_2602196_SNP [dm3] 3L_2602196_SNP [dm6]	T	C	4.676e^-4	0.979	NON_SYNONYMOUS_CODING Pxn DOWNSTREAM CG16986	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	6335144	3L_6335144_SNP [dm3] 3L_6342044_SNP [dm6]	G	A	4.677e^-4	0.979	INTRON CG13300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10021906	3L_10021906_SNP [dm3] 3L_10028806_SNP [dm6]	T	C	4.681e^-4	0.979	DOWNSTREAM CR45155 INTRON dpr6
2R	12633116	2R_12633116_SNP [dm3] 2R_16745611_SNP [dm6]	G	A	4.687e^-4	0.979	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
3R	8852697	3R_8852697_SNP [dm3] 3R_13026975_SNP [dm6]	A	C	4.693e^-4	0.979	UTR_3_PRIME CG12360 DOWNSTREAM CG12360 & 1 other
2R	6446705	2R_6446705_INS [dm3] 2R_10559200_INS [dm6]	A	AACA	4.695e^-4	0.979	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	9664569	X_9664569_DEL [dm3] X_9770536_DEL [dm6]	ATGTTTTAAAGTTA...	A	4.700e^-4	0.979	INTERGENIC
2L	11410255	2L_11410255_SNP [dm3] 2L_11410255_SNP [dm6]	A	T	4.704e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs
3L	920504	3L_920504_SNP [dm3] 3L_920504_SNP [dm6]	A	G	4.716e^-4	0.979	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14834662	2L_14834662_SNP [dm3] 2L_14834662_SNP [dm6]	G	A	4.716e^-4	0.979	INTERGENIC
2R	6791271	2R_6791271_SNP [dm3] 2R_10903766_SNP [dm6]	G	C	4.724e^-4	0.979	INTRON CG12943
3L	12454949	3L_12454949_SNP [dm3] 3L_12461849_SNP [dm6]	A	T	4.730e^-4	0.979	DOWNSTREAM eyg INTERGENIC	TF binding site mE1_TFBS_inv
3L	13250147	3L_13250147_SNP [dm3] 3L_13257047_SNP [dm6]	G	A	4.736e^-4	0.979	INTRON caps
2L	9202563	2L_9202563_SNP [dm3] 2L_9202563_SNP [dm6]	T	G	4.739e^-4	0.979	INTRON tai
2L	13983235	2L_13983235_SNP [dm3] 2L_13983235_SNP [dm6]	T	C	4.745e^-4	0.979	UTR_3_PRIME NimC2 & 1 other DOWNSTREAM NimC2
2R	18332697	2R_18332697_SNP [dm3] 2R_22445192_SNP [dm6]	C	T	4.746e^-4	0.979	INTERGENIC
X	21888860	X_21888860_SNP [dm3] X_22487024_SNP [dm6]	T	A	4.751e^-4	0.979	UPSTREAM l_1_G0196 DOWNSTREAM Cp110 & 1 other INTRON Cp110
X	16094420	X_16094420_SNP [dm3] X_16200387_SNP [dm6]	C	T	4.768e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15036940	3R_15036940_SNP [dm3] 3R_19211218_SNP [dm6]	C	T	4.772e^-4	0.979	UPSTREAM cry INTERGENIC
2L	12666835	2L_12666835_SNP [dm3] 2L_12666835_SNP [dm6]	C	T	4.774e^-4	0.979	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18523304	3R_18523304_SNP [dm3] 3R_22697582_SNP [dm6]	A	T	4.789e^-4	0.979	SPLICE_SITE_REGION cd UPSTREAM Cyp6d4 INTRON cd
3R	12082446	3R_12082446_SNP [dm3] 3R_16256724_SNP [dm6]	C	T	4.791e^-4	0.979	INTRON tara	TF binding site mE1_TFBS_cad mE1_TFBS_eve
2L	19640517	2L_19640517_SNP [dm3] 2L_19640517_SNP [dm6]	T	C	4.791e^-4	0.979	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18893498	3L_18893498_SNP [dm3] 3L_18900398_SNP [dm6]	G	T	4.793e^-4	0.979	DOWNSTREAM arx & 1 other INTERGENIC
2R	8612657	2R_8612657_SNP [dm3] 2R_12725152_SNP [dm6]	A	G	4.804e^-4	0.979	INTRON CG42663
2L	9487008	2L_9487008_SNP [dm3] 2L_9487008_SNP [dm6]	A	T	4.809e^-4	0.979	INTERGENIC
3L	13353831	3L_13353831_SNP [dm3] 3L_13360731_SNP [dm6]	C	G	4.809e^-4	0.979	INTERGENIC
3R	16981935	3R_16981935_SNP [dm3] 3R_21156213_SNP [dm6]	A	G	4.818e^-4	0.979	UPSTREAM SNF4Agamma INTRON SNF4Agamma	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	9008581	X_9008581_SNP [dm3] X_9114548_SNP [dm6]	T	C	4.826e^-4	0.979	SYNONYMOUS_CODING AP-1gamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15163361	3R_15163361_INS [dm3] 3R_19337639_INS [dm6]	T	TG	4.838e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18193781	3L_18193781_SNP [dm3] 3L_18200681_SNP [dm6]	A	G	4.838e^-4	0.979	UPSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	7448243	X_7448243_SNP [dm3] X_7554210_SNP [dm6]	T	G	4.844e^-4	0.979	INTERGENIC
X	4438549	X_4438549_SNP [dm3] X_4544516_SNP [dm6]	C	A	4.846e^-4	0.979	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9527148	2L_9527148_INS [dm3] 2L_9527148_INS [dm6]	A	AAGTGTATTATACAGATATA...	4.852e^-4	0.979	INTRON Oatp30B
3R	12086771	3R_12086771_SNP [dm3] 3R_16261049_SNP [dm6]	C	T	4.854e^-4	0.979	DOWNSTREAM tara & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9643748	3L_9643748_SNP [dm3] 3L_9650648_SNP [dm6]	A	G	4.854e^-4	0.979	INTRON fry & 1 other
2R	15326881	2R_15326881_SNP [dm3] 2R_19439376_SNP [dm6]	G	T	4.862e^-4	0.979	SPLICE_SITE_REGION Spt5 INTRON Spt5
3R	10224624	3R_10224624_DEL [dm3] 3R_14398902_DEL [dm6]	TGT	T	4.868e^-4	0.979	INTRON cv-c
2L	19099128	2L_19099128_SNP [dm3] 2L_19099128_SNP [dm6]	C	T	4.881e^-4	0.979	INTRON Lim3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9144763	2L_9144763_SNP [dm3] 2L_9144763_SNP [dm6]	G	A	4.882e^-4	0.979	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3R	18523202	3R_18523202_SNP [dm3] 3R_22697480_SNP [dm6]	T	C	4.885e^-4	0.979	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
3R	18523219	3R_18523219_SNP [dm3] 3R_22697497_SNP [dm6]	T	G	4.885e^-4	0.979	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
2R	20367732	2R_20367732_SNP [dm3] 2R_24480209_SNP [dm6]	C	G	4.890e^-4	0.979	INTRON CG13579
2L	5890874	2L_5890874_SNP [dm3] 2L_5890874_SNP [dm6]	G	A	4.907e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	19519283	2R_19519283_SNP [dm3] 2R_23631760_SNP [dm6]	C	A	4.907e^-4	0.979	UPSTREAM retn INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10608370	2R_10608370_SNP [dm3] 2R_14720865_SNP [dm6]	T	A	4.913e^-4	0.979	INTERGENIC
3R	25555296	3R_25555296_SNP [dm3] 3R_29729574_SNP [dm6]	A	G	4.918e^-4	0.979	INTRON Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	3031011	2R_3031011_SNP [dm3] 2R_7143506_SNP [dm6]	C	T	4.919e^-4	0.979	INTERGENIC
3R	25992788	3R_25992788_SNP [dm3] 3R_30167066_SNP [dm6]	G	A	4.924e^-4	0.979	SYNONYMOUS_CODING CG31028 UPSTREAM CG31030	TF binding site BDTNP1_TFBS_twi
3L	1683450	3L_1683450_SNP [dm3] 3L_1683450_SNP [dm6]	T	G	4.925e^-4	0.979	INTRON CG7991
3L	3784166	3L_3784166_DEL [dm3] 3L_3784166_DEL [dm6]	GTCAGCAG	G	4.946e^-4	0.979	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9890364	3R_9890364_SNP [dm3] 3R_14064642_SNP [dm6]	A	G	4.949e^-4	0.979	INTRON foxo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	1368383	3L_1368383_SNP [dm3] 3L_1368383_SNP [dm6]	G	A	4.951e^-4	0.979	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20421616	3R_20421616_SNP [dm3] 3R_24595894_SNP [dm6]	C	G	4.954e^-4	0.979	INTRON mld	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20256478	3L_20256478_SNP [dm3] 3L_20263378_SNP [dm6]	C	A	4.956e^-4	0.979	NON_SYNONYMOUS_CODING rdgC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1031824	3L_1031824_SNP [dm3] 3L_1031824_SNP [dm6]	T	A	4.967e^-4	0.979	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18888371	3L_18888371_SNP [dm3] 3L_18895271_SNP [dm6]	T	C	4.968e^-4	0.979	DOWNSTREAM snoRNA:Psi28S-2566 INTRON CG3902
3L	5527374	3L_5527374_SNP [dm3] 3L_5534274_SNP [dm6]	C	G	4.973e^-4	0.979	UTR_3_PRIME CG13285 DOWNSTREAM CG13285
2L	5567395	2L_5567395_INS [dm3] 2L_5567395_INS [dm6]	A	ACA	4.975e^-4	0.979	INTERGENIC
3L	7171942	3L_7171942_SNP [dm3] 3L_7178842_SNP [dm6]	G	A	4.982e^-4	0.979	INTRON Dscam2
2R	11791385	2R_11791385_SNP [dm3] 2R_15903880_SNP [dm6]	T	C	4.990e^-4	0.979	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15040988	3R_15040988_SNP [dm3] 3R_19215266_SNP [dm6]	T	G	4.991e^-4	0.979	SYNONYMOUS_CODING cry DOWNSTREAM vib
3L	17177551	3L_17177551_SNP [dm3] 3L_17184451_SNP [dm6]	T	A	5.008e^-4	0.979	INTRON Rbp6
3L	9053542	3L_9053542_SNP [dm3] 3L_9060442_SNP [dm6]	G	A	5.008e^-4	0.979	INTRON Argk
X	2238588	X_2238588_SNP [dm3] X_2344555_SNP [dm6]	A	G	5.011e^-4	0.979	UTR_5_PRIME mRpL14 DOWNSTREAM phl & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	2223334	X_2223334_SNP [dm3] X_2329301_SNP [dm6]	T	A	5.012e^-4	0.979	UPSTREAM CR33218 DOWNSTREAM CG2854 INTRON phl
X	2541352	X_2541352_SNP [dm3] X_2647319_SNP [dm6]	A	G	5.013e^-4	0.979	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18881762	3L_18881762_SNP [dm3] 3L_18888662_SNP [dm6]	T	C	5.014e^-4	0.979	INTRON CG3961
X	16706129	X_16706129_SNP [dm3] X_16812096_SNP [dm6]	A	G	5.019e^-4	0.979	INTRON CG4829
X	8128134	X_8128134_SNP [dm3] X_8234101_SNP [dm6]	T	G	5.019e^-4	0.979	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	17145100	2R_17145100_SNP [dm3] 2R_21257595_SNP [dm6]	A	C	5.025e^-4	0.979	UTR_5_PRIME Rgk3 INTRON Rgk3
2L	9487002	2L_9487002_SNP [dm3] 2L_9487002_SNP [dm6]	A	T	5.037e^-4	0.979	INTERGENIC
X	6427076	X_6427076_INS [dm3] X_6533043_INS [dm6]	A	AA	5.047e^-4	0.979	UPSTREAM RpL7A & 1 other INTRON RpL7A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	12382313	3L_12382313_SNP [dm3] 3L_12389213_SNP [dm6]	C	A	5.050e^-4	0.979	INTRON Ncc69
3L	17328529	3L_17328529_SNP [dm3] 3L_17335429_SNP [dm6]	A	G	5.055e^-4	0.979	DOWNSTREAM CR44563 & 1 other INTERGENIC
2L	7394815	2L_7394815_SNP [dm3] 2L_7394815_SNP [dm6]	A	C	5.058e^-4	0.979	INTRON CG5160
3L	18885808	3L_18885808_SNP [dm3] 3L_18892708_SNP [dm6]	T	G	5.059e^-4	0.979	DOWNSTREAM CG3902 INTRON NijB	TF binding site mE1_TFBS_cad
2L	11392260	2L_11392260_SNP [dm3] 2L_11392260_SNP [dm6]	C	A	5.064e^-4	0.979	EXON CR43681	regulatory region REDfly_CRMs
X	17257233	X_17257233_SNP [dm3] X_17363200_SNP [dm6]	T	C	5.069e^-4	0.979	INTERGENIC
2R	13081963	2R_13081963_SNP [dm3] 2R_17194458_SNP [dm6]	T	G	5.078e^-4	0.979	UPSTREAM CG10950 INTERGENIC
X	11566175	X_11566175_SNP [dm3] X_11672142_SNP [dm6]	A	G	5.084e^-4	0.979	INTRON Ptp10D
2L	2588829	2L_2588829_SNP [dm3] 2L_2588829_SNP [dm6]	T	G	5.090e^-4	0.979	INTERGENIC
3L	18907038	3L_18907038_SNP [dm3] 3L_18913938_SNP [dm6]	A	C	5.090e^-4	0.979	INTRON CG14077
3R	12333000	3R_12333000_SNP [dm3] 3R_16507278_SNP [dm6]	G	C	5.094e^-4	0.979	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13250316	3L_13250316_SNP [dm3] 3L_13257216_SNP [dm6]	G	A	5.100e^-4	0.979	INTRON caps
2R	7512935	2R_7512935_SNP [dm3] 2R_11625430_SNP [dm6]	T	A	5.100e^-4	0.979	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	7485621	3L_7485621_SNP [dm3] 3L_7492521_SNP [dm6]	T	A	5.101e^-4	0.979	INTRON Cyp316a1
2R	7638452	2R_7638452_SNP [dm3] 2R_11750947_SNP [dm6]	A	G	5.101e^-4	0.979	INTERGENIC
2L	7368953	2L_7368953_SNP [dm3] 2L_7368953_SNP [dm6]	G	A	5.108e^-4	0.979	DOWNSTREAM CR44063 INTRON Wnt10
2R	14276694	2R_14276694_SNP [dm3] 2R_18389189_SNP [dm6]	T	A	5.126e^-4	0.979	UPSTREAM CG15065 DOWNSTREAM IM3 INTRON CG16836	TF binding site BDTNP1_TFBS_dl
3L	15282742	3L_15282742_SNP [dm3] 3L_15289642_SNP [dm6]	C	T	5.134e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8271999	X_8271999_SNP [dm3] X_8377966_SNP [dm6]	C	T	5.135e^-4	0.979	INTERGENIC
3L	18883011	3L_18883011_SNP [dm3] 3L_18889911_SNP [dm6]	A	T	5.149e^-4	0.979	INTRON CG3961	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25483964	3R_25483964_SNP [dm3] 3R_29658242_SNP [dm6]	C	T	5.160e^-4	0.979	INTRON Dop1R2
3L	1260236	3L_1260236_SNP [dm3] 3L_1260236_SNP [dm6]	A	T	5.162e^-4	0.979	INTRON CG9134
3R	15204262	3R_15204262_SNP [dm3] 3R_19378540_SNP [dm6]	T	C	5.162e^-4	0.979	INTRON Ino80
3L	6763404	3L_6763404_SNP [dm3] 3L_6770304_SNP [dm6]	G	A	5.164e^-4	0.979	INTERGENIC
3R	13934577	3R_13934577_SNP [dm3] 3R_18108855_SNP [dm6]	A	T	5.166e^-4	0.979	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
3L	1256122	3L_1256122_SNP [dm3] 3L_1256122_SNP [dm6]	C	T	5.168e^-4	0.979	UPSTREAM CG9134 DOWNSTREAM CG9130 & 1 other INTERGENIC
3R	5865205	3R_5865205_SNP [dm3] 3R_10039483_SNP [dm6]	T	A	5.170e^-4	0.979	INTRON Mical
3R	6320060	3R_6320060_SNP [dm3] 3R_10494338_SNP [dm6]	T	C	5.173e^-4	0.979	INTERGENIC
3R	15124599	3R_15124599_SNP [dm3] 3R_19298877_SNP [dm6]	G	C	5.174e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18165680	X_18165680_SNP [dm3] X_18271647_SNP [dm6]	C	T	5.177e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9203108	2L_9203108_SNP [dm3] 2L_9203108_SNP [dm6]	A	T	5.181e^-4	0.979	INTRON tai	TF binding site mE1_TFBS_Trl
2L	9203110	2L_9203110_INS [dm3] 2L_9203110_INS [dm6]	A	AG	5.181e^-4	0.979	INTRON tai	TF binding site mE1_TFBS_Trl
2L	5871678	2L_5871678_SNP [dm3] 2L_5871678_SNP [dm6]	G	A	5.182e^-4	0.979	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	18882588	3L_18882588_SNP [dm3] 3L_18889488_SNP [dm6]	A	G	5.183e^-4	0.979	INTRON CG3961
3R	10679773	3R_10679773_SNP [dm3] 3R_14854051_SNP [dm6]	G	C	5.189e^-4	0.979	UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7152892	2L_7152892_SNP [dm3] 2L_7152892_SNP [dm6]	G	A	5.192e^-4	0.979	INTRON Pvf3
2R	10698002	2R_10698002_SNP [dm3] 2R_14810497_SNP [dm6]	T	C	5.197e^-4	0.979	DOWNSTREAM hui INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2236924	X_2236924_SNP [dm3] X_2342891_SNP [dm6]	T	C	5.200e^-4	0.979	SYNONYMOUS_CODING phl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	5.201e^-4	0.979	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	10049478	2L_10049478_SNP [dm3] 2L_10049478_SNP [dm6]	G	T	5.209e^-4	0.979	UPSTREAM CG33301 INTERGENIC	TF binding site mE1_TFBS_cad
2L	7012395	2L_7012395_SNP [dm3] 2L_7012395_SNP [dm6]	A	G	5.216e^-4	0.979	SYNONYMOUS_CODING CG43321
3R	7865757	3R_7865757_SNP [dm3] 3R_12040035_SNP [dm6]	G	T	5.219e^-4	0.979	UPSTREAM CG14736 INTERGENIC
2L	8061294	2L_8061294_SNP [dm3] 2L_8061294_SNP [dm6]	A	C	5.219e^-4	0.979	INTRON poe	TF binding site mE1_TFBS_chinmo
2L	15817526	2L_15817526_SNP [dm3] 2L_15817526_SNP [dm6]	G	A	5.225e^-4	0.979	INTERGENIC
X	2176706	X_2176706_DEL [dm3] X_2282673_DEL [dm6]	CTATCGACGCCACAGAGACC...	C	5.234e^-4	0.979	INTRON CG2865	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21069920	3R_21069920_SNP [dm3] 3R_25244198_SNP [dm6]	C	A	5.236e^-4	0.979	NON_SYNONYMOUS_CODING bam DOWNSTREAM CG11854	TF binding site mE1_TFBS_sens
X	21932957	X_21932957_SNP [dm3] X_22531121_SNP [dm6]	T	C	5.281e^-4	0.979	SYNONYMOUS_CODING S6kII INTRON CG17600	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15013268	2L_15013268_SNP [dm3] 2L_15013268_SNP [dm6]	A	C	5.286e^-4	0.979	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4164617	3L_4164617_SNP [dm3] 3L_4164617_SNP [dm6]	T	A	5.287e^-4	0.979	INTRON mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11764674	2R_11764674_SNP [dm3] 2R_15877169_SNP [dm6]	T	C	5.288e^-4	0.979	SPLICE_SITE_REGION sli INTRON sli
3L	10898166	3L_10898166_SNP [dm3] 3L_10905066_SNP [dm6]	C	A	5.288e^-4	0.979	INTERGENIC
3R	25597630	3R_25597630_SNP [dm3] 3R_29771908_SNP [dm6]	T	C	5.295e^-4	0.979	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	22412033	X_22412033_SNP [dm3] X_23010197_SNP [dm6]	G	A	5.297e^-4	0.979	STOP_GAINED FucTC UPSTREAM CR45010 DOWNSTREAM CR45009	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	22368837	X_22368837_SNP [dm3] X_22967001_SNP [dm6]	G	A	5.304e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10378611	3L_10378611_SNP [dm3] 3L_10385511_SNP [dm6]	T	A	5.304e^-4	0.979	UPSTREAM CR45245 INTERGENIC
X	5230024	X_5230024_SNP [dm3] X_5335991_SNP [dm6]	C	T	5.311e^-4	0.979	INTERGENIC
2R	17547598	2R_17547598_SNP [dm3] 2R_21660093_SNP [dm6]	A	G	5.314e^-4	0.979	UPSTREAM Rae1 DOWNSTREAM pirk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	15889543	2L_15889543_SNP [dm3] 2L_15889543_SNP [dm6]	G	A	5.323e^-4	0.979	NON_SYNONYMOUS_CODING Tep1 DOWNSTREAM CR31824
2R	9414724	2R_9414724_INS [dm3] 2R_13527219_INS [dm6]	T	TT	5.331e^-4	0.979	DOWNSTREAM CG13332 INTRON Vmat
2L	9203455	2L_9203455_SNP [dm3] 2L_9203455_SNP [dm6]	C	T	5.334e^-4	0.979	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	23753339	3R_23753339_SNP [dm3] 3R_27927617_SNP [dm6]	C	T	5.335e^-4	0.979	SYNONYMOUS_CODING CG31053 INTRON mino	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25509468	3R_25509468_SNP [dm3] 3R_29683746_SNP [dm6]	G	A	5.355e^-4	0.979	SYNONYMOUS_CODING Gycalpha99B	TF binding site mE1_TFBS_cad
2L	4854363	2L_4854363_SNP [dm3] 2L_4854363_SNP [dm6]	G	C	5.362e^-4	0.979	INTRON pog
3R	6880925	3R_6880925_SNP [dm3] 3R_11055203_SNP [dm6]	C	T	5.369e^-4	0.979	INTERGENIC
3L	1260368	3L_1260368_SNP [dm3] 3L_1260368_SNP [dm6]	G	C	5.369e^-4	0.979	INTRON CG9134
2L	3849077	2L_3849077_SNP [dm3] 2L_3849077_SNP [dm6]	A	G	5.375e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	12666820	2L_12666820_INS [dm3] 2L_12666820_INS [dm6]	T	TT	5.386e^-4	0.979	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9143971	2L_9143971_SNP [dm3] 2L_9143971_SNP [dm6]	A	T	5.387e^-4	0.979	INTRON CG32982
X	14419982	X_14419982_SNP [dm3] X_14525949_SNP [dm6]	G	C	5.390e^-4	0.979	INTERGENIC
X	14011965	X_14011965_INS [dm3] X_14117932_INS [dm6]	A	ATAG	5.393e^-4	0.979	UPSTREAM tRNA:S7:12Eg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19144249	2R_19144249_SNP [dm3] 2R_23256726_SNP [dm6]	T	C	5.397e^-4	0.979	INTERGENIC
2L	3441494	2L_3441494_SNP [dm3] 2L_3441494_SNP [dm6]	A	T	5.398e^-4	0.979	INTERGENIC
2L	1673857	2L_1673857_SNP [dm3] 2L_1673857_SNP [dm6]	G	T	5.401e^-4	0.979	INTRON chinmo
X	20571391	X_20571391_DEL [dm3] X_20700364_DEL [dm6]	AAGATATTTTCTTA...	A	5.408e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs
2R	18439022	2R_18439022_SNP [dm3] 2R_22551517_SNP [dm6]	T	C	5.410e^-4	0.979	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	20509888	2R_20509888_DEL [dm3] 2R_24622365_DEL [dm6]	ATTTCCGCAGTTACTTGGCG...	A	5.414e^-4	0.979	INTRON CG13594	TF binding site mE1_TFBS_chinmo
3R	8997392	3R_8997392_SNP [dm3] 3R_13171670_SNP [dm6]	G	C	5.422e^-4	0.979	INTERGENIC
3L	9222746	3L_9222746_DEL [dm3] 3L_9229646_DEL [dm6]	TCCT	T	5.422e^-4	0.979	INTERGENIC
X	6507747	X_6507747_SNP [dm3] X_6613714_SNP [dm6]	A	G	5.437e^-4	0.979	INTRON pigs	TF binding site mE1_TFBS_sens
X	20447594	X_20447594_SNP [dm3] X_20576567_SNP [dm6]	T	A	5.442e^-4	0.979	INTERGENIC
X	19357683	X_19357683_INS [dm3] X_19463650_INS [dm6]	A	AGCATTCAAG	5.450e^-4	0.979	INTRON kek5
3L	6890725	3L_6890725_SNP [dm3] 3L_6897625_SNP [dm6]	A	C	5.452e^-4	0.979	INTERGENIC
2L	6552624	2L_6552624_SNP [dm3] 2L_6552624_SNP [dm6]	T	C	5.460e^-4	0.979	DOWNSTREAM CR44776 INTERGENIC
3L	1591567	3L_1591567_SNP [dm3] 3L_1591567_SNP [dm6]	T	A	5.462e^-4	0.979	INTRON CG13917
3R	21997491	3R_21997491_SNP [dm3] 3R_26171769_SNP [dm6]	C	T	5.462e^-4	0.979	INTRON CG31323
2L	8001494	2L_8001494_SNP [dm3] 2L_8001494_SNP [dm6]	T	G	5.467e^-4	0.979	INTRON Wwox
2L	1717417	2L_1717417_SNP [dm3] 2L_1717417_SNP [dm6]	T	G	5.472e^-4	0.979	INTRON Rim2
2L	2266067	2L_2266067_SNP [dm3] 2L_2266067_SNP [dm6]	G	A	5.485e^-4	0.979	UPSTREAM CG34049 INTERGENIC
3L	4165191	3L_4165191_SNP [dm3] 3L_4165191_SNP [dm6]	A	T	5.505e^-4	0.979	INTRON mas
X	8564986	X_8564986_SNP [dm3] X_8670953_SNP [dm6]	T	G	5.513e^-4	0.979	INTERGENIC
2L	13490924	2L_13490924_SNP [dm3] 2L_13490924_SNP [dm6]	T	G	5.516e^-4	0.979	INTRON CG42784
3R	20865622	3R_20865622_SNP [dm3] 3R_25039900_SNP [dm6]	A	G	5.525e^-4	0.979	NON_SYNONYMOUS_CODING bai UPSTREAM CG6422 DOWNSTREAM 5PtaseI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	12176468	2R_12176468_SNP [dm3] 2R_16288963_SNP [dm6]	G	A	5.541e^-4	0.979	UTR_5_PRIME CG30099 UPSTREAM CG30324 & 1 other INTRON CR43730	TF binding site mE1_TFBS_cad
2L	3007140	2L_3007140_SNP [dm3] 2L_3007140_SNP [dm6]	G	A	5.542e^-4	0.979	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18904577	3L_18904577_SNP [dm3] 3L_18911477_SNP [dm6]	C	G	5.543e^-4	0.979	UPSTREAM Ir75d INTRON CG14077
3L	17271947	3L_17271947_SNP [dm3] 3L_17278847_SNP [dm6]	C	A	5.544e^-4	0.979	INTERGENIC
2R	10608361	2R_10608361_SNP [dm3] 2R_14720856_SNP [dm6]	A	T	5.548e^-4	0.979	INTERGENIC
3R	25075391	3R_25075391_DEL [dm3] 3R_29249669_DEL [dm6]	GAATTAAATAC...	G	5.548e^-4	0.979	UPSTREAM SP1029 INTRON SP1029
2R	11808585	2R_11808585_SNP [dm3] 2R_15921080_SNP [dm6]	T	C	5.561e^-4	0.979	INTRON sli	TF binding site BDTNP1_TFBS_dl
3R	22303180	3R_22303180_SNP [dm3] 3R_26477458_SNP [dm6]	T	G	5.566e^-4	0.979	SYNONYMOUS_CODING plum
3R	6418303	3R_6418303_SNP [dm3] 3R_10592581_SNP [dm6]	C	G	5.568e^-4	0.979	INTRON hth	TF binding site mE1_TFBS_cad
3R	22019868	3R_22019868_SNP [dm3] 3R_26194146_SNP [dm6]	G	T	5.572e^-4	0.979	INTERGENIC
3R	19763641	3R_19763641_SNP [dm3] 3R_23937919_SNP [dm6]	T	A	5.580e^-4	0.979	NON_SYNONYMOUS_CODING Gdh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17264429	3L_17264429_SNP [dm3] 3L_17271329_SNP [dm6]	A	G	5.583e^-4	0.979	INTERGENIC
3L	4149894	3L_4149894_DEL [dm3] 3L_4149894_DEL [dm6]	GTTCTGGCT	G	5.590e^-4	0.979	INTRON CG1299	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2R	16945163	2R_16945163_INS [dm3] 2R_21057658_INS [dm6]	T	TA	5.593e^-4	0.979	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15709435	3L_15709435_SNP [dm3] 3L_15716335_SNP [dm6]	A	T	5.595e^-4	0.979	UPSTREAM CG42571 INTERGENIC	TF binding site mE1_TFBS_cad
3L	6335143	3L_6335143_SNP [dm3] 3L_6342043_SNP [dm6]	A	G	5.602e^-4	0.979	INTRON CG13300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19493244	3L_19493244_SNP [dm3] 3L_19500144_SNP [dm6]	A	C	5.604e^-4	0.979	DOWNSTREAM CG9452 INTRON CG9451
X	14011976	X_14011976_SNP [dm3] X_14117943_SNP [dm6]	G	C	5.610e^-4	0.979	UPSTREAM tRNA:S7:12Eg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18908412	3L_18908412_SNP [dm3] 3L_18915312_SNP [dm6]	A	G	5.615e^-4	0.979	INTERGENIC
X	2277122	X_2277122_SNP [dm3] X_2383089_SNP [dm6]	A	G	5.616e^-4	0.979	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
2L	16782100	2L_16782100_SNP [dm3] 2L_16782100_SNP [dm6]	A	C	5.619e^-4	0.979	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3R	6507863	3R_6507863_SNP [dm3] 3R_10682141_SNP [dm6]	C	A	5.625e^-4	0.979	UPSTREAM CR44230 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6502334	3R_6502334_SNP [dm3] 3R_10676612_SNP [dm6]	T	A	5.626e^-4	0.979	INTRON CG6465
3L	956646	3L_956646_SNP [dm3] 3L_956646_SNP [dm6]	C	T	5.628e^-4	0.979	INTRON Glut1
2L	9671012	2L_9671012_SNP [dm3] 2L_9671012_SNP [dm6]	G	A	5.636e^-4	0.979	EXON CR44150
X	3228430	X_3228430_INS [dm3] X_3334397_INS [dm6]	T	TT	5.646e^-4	0.979	INTRON CR44886 & 1 other
3R	13934533	3R_13934533_DEL [dm3] 3R_18108811_DEL [dm6]	TATTTCGTTG	T	5.653e^-4	0.979	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
3L	4150013	3L_4150013_SNP [dm3] 3L_4150013_SNP [dm6]	A	T	5.662e^-4	0.979	INTRON CG1299	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna

Missing results

By genomic position
Variant impact
Gene name

Cuticul_13_11_Me_C25 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results