DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.681e^-12)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2546 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	7379626	2R_7379626_SNP [dm3] 2R_11492121_SNP [dm6]	G	A	4.602e^-7	0.404	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7229494	3R_7229494_SNP [dm3] 3R_11403772_SNP [dm6]	T	C	6.107e^-7	0.404	UTR_3_PRIME pros
2R	8126340	2R_8126340_SNP [dm3] 2R_12238835_SNP [dm6]	C	A	6.463e^-7	0.404	INTERGENIC
2R	8129610	2R_8129610_SNP [dm3] 2R_12242105_SNP [dm6]	T	C	1.268e^-6	0.444	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3L	1590954	3L_1590954_SNP [dm3] 3L_1590954_SNP [dm6]	C	T	1.383e^-6	0.444	INTRON CG13917
3R	12981451	3R_12981451_SNP [dm3] 3R_17155729_SNP [dm6]	G	A	1.484e^-6	0.444	SYNONYMOUS_CODING Mur89F	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8115551	2R_8115551_SNP [dm3] 2R_12228046_SNP [dm6]	A	T	1.868e^-6	0.444	INTRON CG8854
2L	760529	2L_760529_SNP [dm3] 2L_760529_SNP [dm6]	T	G	2.474e^-6	0.444	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20224047	3R_20224047_SNP [dm3] 3R_24398325_SNP [dm6]	A	T	2.826e^-6	0.444	UTR_3_PRIME nAChRalpha1
2R	8126227	2R_8126227_SNP [dm3] 2R_12238722_SNP [dm6]	G	A	3.067e^-6	0.444	INTERGENIC
X	9131054	X_9131054_SNP [dm3] X_9237021_SNP [dm6]	C	A	3.149e^-6	0.444	UTR_3_PRIME mxc UPSTREAM mir-4916 & 1 other
3R	19061054	3R_19061054_SNP [dm3] 3R_23235332_SNP [dm6]	G	A	3.263e^-6	0.444	INTRON CG4467
2R	8123411	2R_8123411_DEL [dm3] 2R_12235906_DEL [dm6]	TT	T	3.491e^-6	0.444	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	14741100	3R_14741100_SNP [dm3] 3R_18915378_SNP [dm6]	A	T	3.661e^-6	0.444	UTR_5_PRIME Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	8076676	3L_8076676_SNP [dm3] 3L_8083576_SNP [dm6]	T	C	3.698e^-6	0.444	UPSTREAM CR43974 INTRON Ect4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2R	8123410	2R_8123410_SNP [dm3] 2R_12235905_SNP [dm6]	T	G	3.951e^-6	0.444	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	4360549	2L_4360549_SNP [dm3] 2L_4360549_SNP [dm6]	C	A	4.164e^-6	0.444	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	760040	2L_760040_SNP [dm3] 2L_760040_SNP [dm6]	T	A	4.334e^-6	0.444	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo
2R	8092654	2R_8092654_SNP [dm3] 2R_12205149_SNP [dm6]	A	T	4.914e^-6	0.444	UPSTREAM CR45276 INTERGENIC
3L	10387324	3L_10387324_SNP [dm3] 3L_10394224_SNP [dm6]	A	C	5.216e^-6	0.444	INTERGENIC
2R	8133866	2R_8133866_SNP [dm3] 2R_12246361_SNP [dm6]	A	C	5.351e^-6	0.444	DOWNSTREAM CR44315 INTERGENIC
2R	8097982	2R_8097982_SNP [dm3] 2R_12210477_SNP [dm6]	T	C	5.497e^-6	0.444	NON_SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8163087	2R_8163087_SNP [dm3] 2R_12275582_SNP [dm6]	G	A	5.741e^-6	0.444	UTR_3_PRIME Cam DOWNSTREAM Cam
3R	19059172	3R_19059172_SNP [dm3] 3R_23233450_SNP [dm6]	A	G	6.227e^-6	0.444	SPLICE_SITE_REGION CG4467 INTRON CG4467	TF binding site mE1_TFBS_cad
3R	19059181	3R_19059181_SNP [dm3] 3R_23233459_SNP [dm6]	T	G	6.227e^-6	0.444	INTRON CG4467	TF binding site mE1_TFBS_cad
2R	8166810	2R_8166810_SNP [dm3] 2R_12279305_SNP [dm6]	A	T	6.660e^-6	0.444	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	8092696	2R_8092696_SNP [dm3] 2R_12205191_SNP [dm6]	C	A	6.685e^-6	0.444	UPSTREAM CR45276 INTERGENIC
3L	10294022	3L_10294022_SNP [dm3] 3L_10300922_SNP [dm6]	T	A	6.775e^-6	0.444	INTERGENIC
2L	6982358	2L_6982358_SNP [dm3] 2L_6982358_SNP [dm6]	G	A	7.043e^-6	0.444	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13349000	3R_13349000_SNP [dm3] 3R_17523278_SNP [dm6]	G	T	7.109e^-6	0.444	INTERGENIC
3R	19059213	3R_19059213_SNP [dm3] 3R_23233491_SNP [dm6]	A	G	7.415e^-6	0.446	INTRON CG4467	TF binding site mE1_TFBS_cad
2L	15840568	2L_15840568_SNP [dm3] 2L_15840568_SNP [dm6]	C	T	7.603e^-6	0.446	DOWNSTREAM CR45694 INTERGENIC
2L	848395	2L_848395_SNP [dm3] 2L_848395_SNP [dm6]	C	G	8.459e^-6	0.469	INTRON drongo	TF binding site mE1_TFBS_sens
3L	3362268	3L_3362268_SNP [dm3] 3L_3362268_SNP [dm6]	T	G	8.494e^-6	0.469	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3R	25119477	3R_25119477_SNP [dm3] 3R_29293755_SNP [dm6]	G	A	8.995e^-6	0.482	UTR_3_PRIME CG14506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	8101295	2R_8101295_INS [dm3] 2R_12213790_INS [dm6]	T	TG	9.688e^-6	0.494	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18621668	3R_18621668_SNP [dm3] 3R_22795946_SNP [dm6]	C	T	1.000e^-5	0.494	INTERGENIC
3R	18621678	3R_18621678_SNP [dm3] 3R_22795956_SNP [dm6]	T	A	1.000e^-5	0.494	INTERGENIC
X	2244201	X_2244201_SNP [dm3] X_2350168_SNP [dm6]	C	A	1.049e^-5	0.496	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4216726	2R_4216726_SNP [dm3] 2R_8329221_SNP [dm6]	G	A	1.087e^-5	0.496	INTRON pdm3
3R	18621700	3R_18621700_SNP [dm3] 3R_22795978_SNP [dm6]	T	C	1.109e^-5	0.496	INTERGENIC
2R	8122310	2R_8122310_SNP [dm3] 2R_12234805_SNP [dm6]	A	G	1.122e^-5	0.496	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	27274123	3R_27274123_SNP [dm3] 3R_31448401_SNP [dm6]	G	A	1.150e^-5	0.496	INTRON Gprk2
2R	8097803	2R_8097803_SNP [dm3] 2R_12210298_SNP [dm6]	C	T	1.176e^-5	0.496	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8129355	2R_8129355_SNP [dm3] 2R_12241850_SNP [dm6]	A	T	1.189e^-5	0.496	UTR_3_PRIME CG43315 UPSTREAM CG43316 DOWNSTREAM CG43315
2R	9779862	2R_9779862_SNP [dm3] 2R_13892357_SNP [dm6]	T	A	1.240e^-5	0.505	SYNONYMOUS_CODING shot INTRON shot
3L	10293945	3L_10293945_SNP [dm3] 3L_10300845_SNP [dm6]	T	A	1.351e^-5	0.527	INTERGENIC
2R	20266116	2R_20266116_SNP [dm3] 2R_24378593_SNP [dm6]	A	G	1.392e^-5	0.527	NON_SYNONYMOUS_CODING CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo
2R	8108500	2R_8108500_SNP [dm3] 2R_12220995_SNP [dm6]	G	A	1.397e^-5	0.527	INTERGENIC
3L	14480270	3L_14480270_SNP [dm3] 3L_14487170_SNP [dm6]	A	G	1.439e^-5	0.527	INTRON bbg
2R	8151102	2R_8151102_SNP [dm3] 2R_12263597_SNP [dm6]	C	A	1.472e^-5	0.527	UPSTREAM Cam INTRON Cam
2R	8102309	2R_8102309_INS [dm3] 2R_12214804_INS [dm6]	G	GAGTG	1.516e^-5	0.527	DOWNSTREAM CG13171 INTERGENIC
3L	10710957	3L_10710957_SNP [dm3] 3L_10717857_SNP [dm6]	A	T	1.770e^-5	0.527	INTERGENIC
3R	649406	3R_649406_SNP [dm3] 3R_4823684_SNP [dm6]	G	A	1.780e^-5	0.527	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	754799	3L_754799_SNP [dm3] 3L_754799_SNP [dm6]	T	A	1.785e^-5	0.527	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	401696	3L_401696_SNP [dm3] 3L_401696_SNP [dm6]	T	G	1.802e^-5	0.527	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6247716	2R_6247716_SNP [dm3] 2R_10360211_SNP [dm6]	C	G	1.856e^-5	0.527	UPSTREAM CG43396 INTRON CG42732	TF binding site BDTNP1_TFBS_twi
2R	8097882	2R_8097882_SNP [dm3] 2R_12210377_SNP [dm6]	A	G	1.924e^-5	0.527	NON_SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8166807	2R_8166807_DEL [dm3] 2R_12279302_DEL [dm6]	AA	A	1.949e^-5	0.527	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	8127327	2R_8127327_SNP [dm3] 2R_12239822_SNP [dm6]	A	T	1.976e^-5	0.527	UPSTREAM CG13170 INTERGENIC
2L	6574979	2L_6574979_SNP [dm3] 2L_6574979_SNP [dm6]	T	A	2.031e^-5	0.527	NON_SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2577043	3L_2577043_SNP [dm3] 3L_2577043_SNP [dm6]	A	C	2.071e^-5	0.527	INTRON msn	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2244180	X_2244180_SNP [dm3] X_2350147_SNP [dm6]	A	T	2.098e^-5	0.527	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15840575	2L_15840575_SNP [dm3] 2L_15840575_SNP [dm6]	C	G	2.101e^-5	0.527	DOWNSTREAM CR45694 INTERGENIC
2R	11617898	2R_11617898_SNP [dm3] 2R_15730393_SNP [dm6]	T	C	2.110e^-5	0.527	INTRON CG30089
2R	8156504	2R_8156504_SNP [dm3] 2R_12268999_SNP [dm6]	A	T	2.116e^-5	0.527	INTRON Cam
2L	6594328	2L_6594328_SNP [dm3] 2L_6594328_SNP [dm6]	G	A	2.123e^-5	0.527	INTRON CG11319	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8092781	2R_8092781_SNP [dm3] 2R_12205276_SNP [dm6]	C	T	2.128e^-5	0.527	UPSTREAM CR45276 INTERGENIC
3L	21813903	3L_21813903_SNP [dm3] 3L_21820803_SNP [dm6]	C	A	2.136e^-5	0.527	INTERGENIC
3L	754844	3L_754844_SNP [dm3] 3L_754844_SNP [dm6]	C	A	2.136e^-5	0.527	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	19586558	2R_19586558_DEL [dm3] 2R_23699035_DEL [dm6]	TCCATCGCT	T	2.217e^-5	0.527	UTR_3_PRIME CG4091 DOWNSTREAM mRpL43
X	2246568	X_2246568_SNP [dm3] X_2352535_SNP [dm6]	A	T	2.222e^-5	0.527	INTRON ptr	TF binding site mE1_TFBS_sens
2R	8101389	2R_8101389_SNP [dm3] 2R_12213884_SNP [dm6]	A	G	2.278e^-5	0.527	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8090760	2R_8090760_SNP [dm3] 2R_12203255_SNP [dm6]	C	T	2.295e^-5	0.527	INTERGENIC
2R	8096216	2R_8096216_SNP [dm3] 2R_12208711_SNP [dm6]	G	A	2.305e^-5	0.527	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8101314	2R_8101314_SNP [dm3] 2R_12213809_SNP [dm6]	T	C	2.312e^-5	0.527	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26087300	3R_26087300_SNP [dm3] 3R_30261578_SNP [dm6]	T	C	2.315e^-5	0.527	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	19063757	3R_19063757_SNP [dm3] 3R_23238035_SNP [dm6]	T	A	2.349e^-5	0.527	INTRON CG4467
2R	8158540	2R_8158540_SNP [dm3] 2R_12271035_SNP [dm6]	G	T	2.364e^-5	0.527	INTRON Cam
3L	6022449	3L_6022449_SNP [dm3] 3L_6029349_SNP [dm6]	C	T	2.368e^-5	0.527	INTERGENIC
2R	8089970	2R_8089970_SNP [dm3] 2R_12202465_SNP [dm6]	A	G	2.404e^-5	0.527	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20704889	3L_20704889_SNP [dm3] 3L_20711789_SNP [dm6]	T	A	2.405e^-5	0.527	INTERGENIC	TF binding site mE1_TFBS_bab1
X	8807740	X_8807740_SNP [dm3] X_8913707_SNP [dm6]	C	G	2.453e^-5	0.527	INTRON rdgA
3L	5932662	3L_5932662_DEL [dm3] 3L_5939562_DEL [dm6]	TA	T	2.476e^-5	0.527	INTRON CG33993
2R	8101325	2R_8101325_SNP [dm3] 2R_12213820_SNP [dm6]	T	C	2.503e^-5	0.527	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8090555	2R_8090555_DEL [dm3] 2R_12203050_DEL [dm6]	AAAA	A	2.518e^-5	0.527	INTERGENIC
X	8807732	X_8807732_INS [dm3] X_8913699_INS [dm6]	T	TGT	2.528e^-5	0.527	INTRON rdgA
2R	8113999	2R_8113999_SNP [dm3] 2R_12226494_SNP [dm6]	C	G	2.569e^-5	0.527	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8097753	2R_8097753_SNP [dm3] 2R_12210248_SNP [dm6]	C	T	2.604e^-5	0.527	INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3362307	3L_3362307_SNP [dm3] 3L_3362307_SNP [dm6]	G	C	2.605e^-5	0.527	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	8090744	2R_8090744_SNP [dm3] 2R_12203239_SNP [dm6]	A	G	2.624e^-5	0.527	INTERGENIC
3L	497296	3L_497296_SNP [dm3] 3L_497296_SNP [dm6]	A	T	2.657e^-5	0.527	INTRON klar
2R	8090624	2R_8090624_SNP [dm3] 2R_12203119_SNP [dm6]	G	A	2.666e^-5	0.527	INTERGENIC
2L	4360550	2L_4360550_SNP [dm3] 2L_4360550_SNP [dm6]	C	A	2.755e^-5	0.527	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21805234	2L_21805234_SNP [dm3] 2L_21805234_SNP [dm6]	G	A	2.761e^-5	0.527	INTERGENIC
2R	8092783	2R_8092783_SNP [dm3] 2R_12205278_SNP [dm6]	G	T	2.771e^-5	0.527	UPSTREAM CR45276 INTERGENIC
2R	8163976	2R_8163976_SNP [dm3] 2R_12276471_SNP [dm6]	C	A	2.777e^-5	0.527	UTR_3_PRIME Cam
3R	518661	3R_518661_DEL [dm3] 3R_4692939_DEL [dm6]	TAA	T	2.789e^-5	0.527	INTRON CG43427
3L	754847	3L_754847_INS [dm3] 3L_754847_INS [dm6]	A	ATCATTAAGCATAGTTTCAG...	2.807e^-5	0.527	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8113441	2R_8113441_SNP [dm3] 2R_12225936_SNP [dm6]	C	T	2.809e^-5	0.527	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	6587511	2L_6587511_SNP [dm3] 2L_6587511_SNP [dm6]	C	T	2.902e^-5	0.531	INTRON CG11319
X	15848100	X_15848100_INS [dm3] X_15954067_INS [dm6]	T	ATGGTAAAATGCTAATGCAT...	2.909e^-5	0.531	INTRON mmd
3L	18999339	3L_18999339_SNP [dm3] 3L_19006239_SNP [dm6]	C	T	2.926e^-5	0.531	INTRON nkd
2R	8090739	2R_8090739_SNP [dm3] 2R_12203234_SNP [dm6]	G	A	2.949e^-5	0.531	INTERGENIC
2L	6587705	2L_6587705_SNP [dm3] 2L_6587705_SNP [dm6]	A	G	3.041e^-5	0.531	INTRON CG11319
3L	1436184	3L_1436184_SNP [dm3] 3L_1436184_SNP [dm6]	G	C	3.096e^-5	0.531	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16887675	3L_16887675_SNP [dm3] 3L_16894575_SNP [dm6]	G	T	3.128e^-5	0.531	INTRON Lmpt
3L	754820	3L_754820_SNP [dm3] 3L_754820_SNP [dm6]	T	G	3.163e^-5	0.531	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	754829	3L_754829_SNP [dm3] 3L_754829_SNP [dm6]	A	G	3.163e^-5	0.531	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8122309	2R_8122309_SNP [dm3] 2R_12234804_SNP [dm6]	G	A	3.177e^-5	0.531	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8101476	2R_8101476_DEL [dm3] 2R_12213971_DEL [dm6]	CAGTAAGTC	C	3.209e^-5	0.531	UPSTREAM CG13171 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8097197	2R_8097197_SNP [dm3] 2R_12209692_SNP [dm6]	T	G	3.306e^-5	0.531	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7379538	2R_7379538_SNP [dm3] 2R_11492033_SNP [dm6]	G	T	3.310e^-5	0.531	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7749402	2L_7749402_SNP [dm3] 2L_7749402_SNP [dm6]	G	T	3.339e^-5	0.531	INTERGENIC
3L	10293879	3L_10293879_SNP [dm3] 3L_10300779_SNP [dm6]	A	T	3.462e^-5	0.531	INTERGENIC
2R	8734405	2R_8734405_SNP [dm3] 2R_12846900_SNP [dm6]	A	G	3.490e^-5	0.531	UTR_3_PRIME antr UPSTREAM CG17575
3R	3265714	3R_3265714_SNP [dm3] 3R_7439992_SNP [dm6]	A	G	3.504e^-5	0.531	INTRON CG14598
X	5489216	X_5489216_SNP [dm3] X_5595183_SNP [dm6]	A	C	3.579e^-5	0.531	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8101354	2R_8101354_SNP [dm3] 2R_12213849_SNP [dm6]	G	A	3.648e^-5	0.531	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	27369015	3R_27369015_SNP [dm3] 3R_31543293_SNP [dm6]	A	G	3.675e^-5	0.531	START_GAINED nyo UTR_5_PRIME nyo	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	8101378	2R_8101378_SNP [dm3] 2R_12213873_SNP [dm6]	G	A	3.688e^-5	0.531	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25332329	3R_25332329_SNP [dm3] 3R_29506607_SNP [dm6]	G	A	3.743e^-5	0.531	INTERGENIC
X	6414988	X_6414988_SNP [dm3] X_6520955_SNP [dm6]	C	T	3.752e^-5	0.531	INTRON CG42340
2L	15881899	2L_15881899_SNP [dm3] 2L_15881899_SNP [dm6]	T	A	3.843e^-5	0.531	DOWNSTREAM CG44475 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	10293957	3L_10293957_SNP [dm3] 3L_10300857_SNP [dm6]	C	T	3.845e^-5	0.531	INTERGENIC
2R	8104031	2R_8104031_SNP [dm3] 2R_12216526_SNP [dm6]	G	C	3.852e^-5	0.531	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8097196	2R_8097196_SNP [dm3] 2R_12209691_SNP [dm6]	A	G	3.857e^-5	0.531	NON_SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8101390	2R_8101390_SNP [dm3] 2R_12213885_SNP [dm6]	A	C	3.858e^-5	0.531	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6594273	2L_6594273_DEL [dm3] 2L_6594273_DEL [dm6]	CA	C	3.866e^-5	0.531	INTRON CG11319	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2292616	3R_2292616_SNP [dm3] 3R_6466894_SNP [dm6]	G	C	3.884e^-5	0.531	INTERGENIC
3R	13934577	3R_13934577_SNP [dm3] 3R_18108855_SNP [dm6]	A	T	3.889e^-5	0.531	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
2L	7749411	2L_7749411_SNP [dm3] 2L_7749411_SNP [dm6]	C	A	3.893e^-5	0.531	INTERGENIC
2R	8103870	2R_8103870_SNP [dm3] 2R_12216365_SNP [dm6]	A	T	3.894e^-5	0.531	INTERGENIC
2R	8153382	2R_8153382_SNP [dm3] 2R_12265877_SNP [dm6]	G	T	3.911e^-5	0.531	INTRON Cam
2L	6574900	2L_6574900_SNP [dm3] 2L_6574900_SNP [dm6]	G	C	3.971e^-5	0.531	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6427076	X_6427076_INS [dm3] X_6533043_INS [dm6]	A	AA	3.989e^-5	0.531	UPSTREAM RpL7A & 1 other INTRON RpL7A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	8097777	2R_8097777_SNP [dm3] 2R_12210272_SNP [dm6]	C	T	3.999e^-5	0.531	NON_SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	838169	2L_838169_SNP [dm3] 2L_838169_SNP [dm6]	G	A	4.104e^-5	0.531	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8097726	2R_8097726_SNP [dm3] 2R_12210221_SNP [dm6]	C	A	4.107e^-5	0.531	INTRON Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8129578	2R_8129578_SNP [dm3] 2R_12242073_SNP [dm6]	G	C	4.153e^-5	0.531	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8112843	2R_8112843_SNP [dm3] 2R_12225338_SNP [dm6]	T	C	4.191e^-5	0.531	INTRON CG8854
3R	26192898	3R_26192898_SNP [dm3] 3R_30367176_SNP [dm6]	A	C	4.244e^-5	0.531	UTR_3_PRIME hdc
2R	15327744	2R_15327744_SNP [dm3] 2R_19440239_SNP [dm6]	C	T	4.267e^-5	0.531	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_sens
X	11508574	X_11508574_SNP [dm3] X_11614541_SNP [dm6]	C	T	4.277e^-5	0.531	SYNONYMOUS_CODING CG1703 DOWNSTREAM RPA3	TF binding site mE1_TFBS_sens
2R	8153391	2R_8153391_DEL [dm3] 2R_12265886_DEL [dm6]	TTG	T	4.282e^-5	0.531	INTRON Cam
2R	6239066	2R_6239066_SNP [dm3] 2R_10351561_SNP [dm6]	C	T	4.325e^-5	0.531	UTR_3_PRIME CG43172 & 1 other DOWNSTREAM CG43171 & 2 others INTRON CG42732
2R	8090749	2R_8090749_SNP [dm3] 2R_12203244_SNP [dm6]	T	A	4.343e^-5	0.531	INTERGENIC
3R	18621705	3R_18621705_SNP [dm3] 3R_22795983_SNP [dm6]	C	A	4.357e^-5	0.531	INTERGENIC
3R	14741082	3R_14741082_SNP [dm3] 3R_18915360_SNP [dm6]	A	G	4.360e^-5	0.531	START_GAINED Xrp1 UTR_5_PRIME Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	8123249	2R_8123249_SNP [dm3] 2R_12235744_SNP [dm6]	T	A	4.366e^-5	0.531	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8104037	2R_8104037_SNP [dm3] 2R_12216532_SNP [dm6]	C	T	4.395e^-5	0.531	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8097767	2R_8097767_SNP [dm3] 2R_12210262_SNP [dm6]	C	G	4.414e^-5	0.531	SPLICE_SITE_REGION Sr-CII SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26087294	3R_26087294_DEL [dm3] 3R_30261572_DEL [dm6]	AG	A	4.423e^-5	0.531	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	21988388	3R_21988388_SNP [dm3] 3R_26162666_SNP [dm6]	G	A	4.451e^-5	0.531	INTERGENIC
3L	10710967	3L_10710967_SNP [dm3] 3L_10717867_SNP [dm6]	G	A	4.461e^-5	0.531	INTERGENIC
2R	8078006	2R_8078006_INS [dm3] 2R_12190501_INS [dm6]	G	GG	4.488e^-5	0.531	UPSTREAM Cyp6t3 & 1 other INTERGENIC
2R	20045795	2R_20045795_SNP [dm3] 2R_24158272_SNP [dm6]	A	C	4.512e^-5	0.531	UTR_5_PRIME CG42568 UTR_3_PRIME DnaJ-60 DOWNSTREAM DnaJ-60 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	1480020	2L_1480020_SNP [dm3] 2L_1480020_SNP [dm6]	G	A	4.586e^-5	0.531	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8101441	2R_8101441_SNP [dm3] 2R_12213936_SNP [dm6]	T	A	4.669e^-5	0.531	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18621749	3R_18621749_SNP [dm3] 3R_22796027_SNP [dm6]	C	G	4.756e^-5	0.531	INTERGENIC
2L	10928698	2L_10928698_SNP [dm3] 2L_10928698_SNP [dm6]	T	C	4.764e^-5	0.531	INTRON dpr2
2R	8155996	2R_8155996_SNP [dm3] 2R_12268491_SNP [dm6]	G	C	4.771e^-5	0.531	INTRON Cam
2R	8078974	2R_8078974_SNP [dm3] 2R_12191469_SNP [dm6]	G	C	4.786e^-5	0.531	NON_SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
2L	13971804	2L_13971804_SNP [dm3] 2L_13971804_SNP [dm6]	C	T	4.822e^-5	0.531	SYNONYMOUS_CODING NimB5 DOWNSTREAM He	TF binding site mE1_TFBS_cad
2L	15881902	2L_15881902_SNP [dm3] 2L_15881902_SNP [dm6]	A	G	4.829e^-5	0.531	DOWNSTREAM CG44475 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	2590917	3L_2590917_SNP [dm3] 3L_2590917_SNP [dm6]	T	A	4.912e^-5	0.531	UTR_5_PRIME dos INTRON dos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
3R	13934449	3R_13934449_SNP [dm3] 3R_18108727_SNP [dm6]	T	A	4.926e^-5	0.531	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
3R	26195961	3R_26195961_SNP [dm3] 3R_30370239_SNP [dm6]	C	T	4.947e^-5	0.531	UTR_3_PRIME hdc
3R	3141467	3R_3141467_SNP [dm3] 3R_7315745_SNP [dm6]	A	T	4.958e^-5	0.531	UTR_3_PRIME CG10029
2R	8172290	2R_8172290_SNP [dm3] 2R_12284785_SNP [dm6]	T	A	4.972e^-5	0.531	INTRON CG42700
2R	8097749	2R_8097749_SNP [dm3] 2R_12210244_SNP [dm6]	T	C	4.975e^-5	0.531	INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8097748	2R_8097748_SNP [dm3] 2R_12210243_SNP [dm6]	T	A	5.012e^-5	0.531	INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27366790	3R_27366790_SNP [dm3] 3R_31541068_SNP [dm6]	T	A	5.027e^-5	0.531	INTERGENIC
2L	6574873	2L_6574873_SNP [dm3] 2L_6574873_SNP [dm6]	A	G	5.038e^-5	0.531	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11508580	X_11508580_SNP [dm3] X_11614547_SNP [dm6]	G	T	5.063e^-5	0.531	SYNONYMOUS_CODING CG1703 DOWNSTREAM RPA3	TF binding site mE1_TFBS_sens
3R	9949217	3R_9949217_SNP [dm3] 3R_14123495_SNP [dm6]	G	A	5.073e^-5	0.531	SYNONYMOUS_CODING twf DOWNSTREAM 140up	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	767038	2L_767038_SNP [dm3] 2L_767038_SNP [dm6]	A	C	5.075e^-5	0.531	INTERGENIC
2R	8101497	2R_8101497_SNP [dm3] 2R_12213992_SNP [dm6]	C	T	5.077e^-5	0.531	UPSTREAM CG13171 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11435486	2L_11435486_DEL [dm3] 2L_11435486_DEL [dm6]	TA	T	5.087e^-5	0.531	UTR_3_PRIME salm
3R	13934913	3R_13934913_SNP [dm3] 3R_18109191_SNP [dm6]	G	A	5.100e^-5	0.531	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
2R	15431754	2R_15431754_SNP [dm3] 2R_19544249_SNP [dm6]	G	T	5.209e^-5	0.536	INTRON sm
2R	8097551	2R_8097551_SNP [dm3] 2R_12210046_SNP [dm6]	G	T	5.210e^-5	0.536	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21998009	3R_21998009_DEL [dm3] 3R_26172287_DEL [dm6]	AA	A	5.284e^-5	0.536	INTRON CG31323
3L	10294016	3L_10294016_SNP [dm3] 3L_10300916_SNP [dm6]	G	A	5.316e^-5	0.536	INTERGENIC
3R	27366787	3R_27366787_SNP [dm3] 3R_31541065_SNP [dm6]	C	T	5.318e^-5	0.536	INTERGENIC
X	11509486	X_11509486_SNP [dm3] X_11615453_SNP [dm6]	A	G	5.338e^-5	0.536	UPSTREAM Met DOWNSTREAM CG1703 INTRON RPA3	TF binding site BDTNP1_TFBS_dl
3L	10695012	3L_10695012_SNP [dm3] 3L_10701912_SNP [dm6]	G	T	5.370e^-5	0.536	INTERGENIC
3L	1278704	3L_1278704_SNP [dm3] 3L_1278704_SNP [dm6]	G	T	5.380e^-5	0.536	INTRON CG32333
2L	2620859	2L_2620859_SNP [dm3] 2L_2620859_SNP [dm6]	C	G	5.402e^-5	0.536	DOWNSTREAM CG43403 INTERGENIC
X	8807715	X_8807715_SNP [dm3] X_8913682_SNP [dm6]	T	A	5.502e^-5	0.543	INTRON rdgA
3L	3797883	3L_3797883_SNP [dm3] 3L_3797883_SNP [dm6]	C	A	5.568e^-5	0.544	INTRON CG32264
2R	8155744	2R_8155744_SNP [dm3] 2R_12268239_SNP [dm6]	G	A	5.588e^-5	0.544	INTRON Cam
3R	2292568	3R_2292568_SNP [dm3] 3R_6466846_SNP [dm6]	G	A	5.598e^-5	0.544	INTERGENIC
3L	10695016	3L_10695016_SNP [dm3] 3L_10701916_SNP [dm6]	G	A	5.670e^-5	0.545	INTERGENIC
2R	8167588	2R_8167588_SNP [dm3] 2R_12280083_SNP [dm6]	C	G	5.674e^-5	0.545	UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo
3L	10710956	3L_10710956_SNP [dm3] 3L_10717856_SNP [dm6]	C	A	5.731e^-5	0.545	INTERGENIC
3R	2292297	3R_2292297_SNP [dm3] 3R_6466575_SNP [dm6]	C	A	5.750e^-5	0.545	INTERGENIC
3R	2292313	3R_2292313_SNP [dm3] 3R_6466591_SNP [dm6]	A	G	5.774e^-5	0.545	INTERGENIC
2R	8097203	2R_8097203_SNP [dm3] 2R_12209698_SNP [dm6]	T	C	5.793e^-5	0.545	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21583693	3R_21583693_SNP [dm3] 3R_25757971_SNP [dm6]	A	C	5.835e^-5	0.545	INTRON LpR1
X	8807753	X_8807753_SNP [dm3] X_8913720_SNP [dm6]	G	C	5.870e^-5	0.545	INTRON rdgA
2R	14232026	2R_14232026_SNP [dm3] 2R_18344521_SNP [dm6]	C	T	5.907e^-5	0.545	INTRON sbb
2R	8101436	2R_8101436_SNP [dm3] 2R_12213931_SNP [dm6]	A	T	5.920e^-5	0.545	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8166538	2R_8166538_SNP [dm3] 2R_12279033_SNP [dm6]	T	C	5.939e^-5	0.545	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	8096130	2R_8096130_SNP [dm3] 2R_12208625_SNP [dm6]	G	A	5.977e^-5	0.545	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8101400	2R_8101400_DEL [dm3] 2R_12213895_DEL [dm6]	TAAATATAACA...	T	6.088e^-5	0.545	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	2588178	3R_2588178_SNP [dm3] 3R_6762456_SNP [dm6]	A	G	6.090e^-5	0.545	UPSTREAM Ama INTRON CR45593 EXON CR45593	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1690964	3L_1690964_SNP [dm3] 3L_1690964_SNP [dm6]	G	A	6.110e^-5	0.545	INTRON CG7991
2R	8160707	2R_8160707_SNP [dm3] 2R_12273202_SNP [dm6]	T	C	6.112e^-5	0.545	INTRON Cam
3R	18621688	3R_18621688_SNP [dm3] 3R_22795966_SNP [dm6]	C	A	6.127e^-5	0.545	INTERGENIC
2R	8114221	2R_8114221_SNP [dm3] 2R_12226716_SNP [dm6]	G	T	6.138e^-5	0.545	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
3L	423194	3L_423194_SNP [dm3] 3L_423194_SNP [dm6]	C	T	6.158e^-5	0.545	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8090765	2R_8090765_SNP [dm3] 2R_12203260_SNP [dm6]	C	T	6.227e^-5	0.546	INTERGENIC
X	9283470	X_9283470_SNP [dm3] X_9389437_SNP [dm6]	T	C	6.228e^-5	0.546	INTRON mgl
2R	8118730	2R_8118730_SNP [dm3] 2R_12231225_SNP [dm6]	T	A	6.255e^-5	0.546	INTERGENIC
2R	8101396	2R_8101396_SNP [dm3] 2R_12213891_SNP [dm6]	A	G	6.332e^-5	0.55	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6678690	3L_6678690_SNP [dm3] 3L_6685590_SNP [dm6]	T	A	6.478e^-5	0.556	INTERGENIC
2R	8123840	2R_8123840_SNP [dm3] 2R_12236335_SNP [dm6]	C	A	6.498e^-5	0.556	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	6826791	X_6826791_SNP [dm3] X_6932758_SNP [dm6]	G	C	6.521e^-5	0.556	INTRON CG14431
2L	6982388	2L_6982388_SNP [dm3] 2L_6982388_SNP [dm6]	C	T	6.522e^-5	0.556	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10179424	3L_10179424_SNP [dm3] 3L_10186324_SNP [dm6]	A	C	6.613e^-5	0.556	UPSTREAM dpr10 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	8101449	2R_8101449_DEL [dm3] 2R_12213944_DEL [dm6]	TTATTTAAT	T	6.621e^-5	0.556	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8166698	2R_8166698_SNP [dm3] 2R_12279193_SNP [dm6]	T	A	6.636e^-5	0.556	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2L	6575425	2L_6575425_SNP [dm3] 2L_6575425_SNP [dm6]	A	C	6.649e^-5	0.556	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad
3R	26602388	3R_26602388_SNP [dm3] 3R_30776666_SNP [dm6]	A	G	6.713e^-5	0.556	INTRON zfh1
2R	14232022	2R_14232022_INS [dm3] 2R_18344517_INS [dm6]	A	AA	6.720e^-5	0.556	INTRON sbb
2R	9090506	2R_9090506_SNP [dm3] 2R_13203001_SNP [dm6]	T	C	6.732e^-5	0.556	DOWNSTREAM Aats-val INTRON lat & 1 other	TF binding site mE1_TFBS_cad
3L	9831358	3L_9831358_SNP [dm3] 3L_9838258_SNP [dm6]	A	G	6.826e^-5	0.559	SYNONYMOUS_CODING Cdk8 DOWNSTREAM RasGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	8129756	2R_8129756_INS [dm3] 2R_12242251_INS [dm6]	G	GG	6.871e^-5	0.559	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2L	6593723	2L_6593723_SNP [dm3] 2L_6593723_SNP [dm6]	T	A	6.885e^-5	0.559	INTRON CG11319
X	11509456	X_11509456_SNP [dm3] X_11615423_SNP [dm6]	G	A	6.890e^-5	0.559	SYNONYMOUS_CODING RPA3 UPSTREAM Met DOWNSTREAM CG1703	TF binding site BDTNP1_TFBS_dl
2R	8143489	2R_8143489_SNP [dm3] 2R_12255984_SNP [dm6]	C	G	7.020e^-5	0.566	DOWNSTREAM CG13168 INTERGENIC
3R	643493	3R_643493_SNP [dm3] 3R_4817771_SNP [dm6]	A	C	7.066e^-5	0.566	UTR_3_PRIME CG1126 DOWNSTREAM CG14657	TF binding site mE1_TFBS_cad
2R	8097266	2R_8097266_SNP [dm3] 2R_12209761_SNP [dm6]	A	G	7.077e^-5	0.566	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_twi
2R	8077706	2R_8077706_SNP [dm3] 2R_12190201_SNP [dm6]	G	T	7.106e^-5	0.566	SYNONYMOUS_CODING Cyp6g2 UPSTREAM Cyp6t3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	919591	3L_919591_DEL [dm3] 3L_919591_DEL [dm6]	CGT	C	7.134e^-5	0.566	INTRON Glut1
2L	4702652	2L_4702652_SNP [dm3] 2L_4702652_SNP [dm6]	G	A	7.148e^-5	0.566	INTRON CG34351
2R	6239121	2R_6239121_SNP [dm3] 2R_10351616_SNP [dm6]	C	T	7.212e^-5	0.568	UTR_3_PRIME CG43172 & 1 other DOWNSTREAM CG43171 & 2 others INTRON CG42732
2R	8101395	2R_8101395_SNP [dm3] 2R_12213890_SNP [dm6]	C	A	7.355e^-5	0.573	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6575304	2L_6575304_SNP [dm3] 2L_6575304_SNP [dm6]	G	T	7.428e^-5	0.573	NON_SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad
2R	8141391	2R_8141391_SNP [dm3] 2R_12253886_SNP [dm6]	G	C	7.430e^-5	0.573	UPSTREAM CG13168 INTERGENIC
2R	8105402	2R_8105402_SNP [dm3] 2R_12217897_SNP [dm6]	C	G	7.461e^-5	0.573	INTERGENIC	TF binding site mE1_TFBS_inv
3R	13934533	3R_13934533_DEL [dm3] 3R_18108811_DEL [dm6]	TATTTCGTTG	T	7.472e^-5	0.573	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
3L	18999285	3L_18999285_SNP [dm3] 3L_19006185_SNP [dm6]	C	T	7.476e^-5	0.573	INTRON nkd	TF binding site mE1_TFBS_inv
2L	6594104	2L_6594104_SNP [dm3] 2L_6594104_SNP [dm6]	A	G	7.526e^-5	0.573	INTRON CG11319	TF binding site BDTNP1_TFBS_dl
2R	8127730	2R_8127730_SNP [dm3] 2R_12240225_SNP [dm6]	T	C	7.564e^-5	0.573	UPSTREAM CG13170 & 1 other INTERGENIC
2R	8092786	2R_8092786_SNP [dm3] 2R_12205281_SNP [dm6]	C	T	7.567e^-5	0.573	UPSTREAM CR45276 INTERGENIC
2R	10159962	2R_10159962_SNP [dm3] 2R_14272457_SNP [dm6]	G	A	7.580e^-5	0.573	SYNONYMOUS_CODING conv
2R	6239480	2R_6239480_SNP [dm3] 2R_10351975_SNP [dm6]	G	A	7.613e^-5	0.573	UTR_5_PRIME CG43172 DOWNSTREAM CG43171 & 2 others INTRON CG42732 & 2 others
2R	15098045	2R_15098045_SNP [dm3] 2R_19210540_SNP [dm6]	G	A	7.660e^-5	0.573	INTRON hppy
3L	1278708	3L_1278708_SNP [dm3] 3L_1278708_SNP [dm6]	C	T	7.692e^-5	0.573	INTRON CG32333
X	4048384	X_4048384_SNP [dm3] X_4154351_SNP [dm6]	G	T	7.712e^-5	0.573	INTRON Fas2
3L	1591017	3L_1591017_SNP [dm3] 3L_1591017_SNP [dm6]	T	G	7.726e^-5	0.573	INTRON CG13917
2L	15854133	2L_15854133_SNP [dm3] 2L_15854133_SNP [dm6]	A	G	7.807e^-5	0.576	START_GAINED Tektin-A UTR_5_PRIME Tektin-A UPSTREAM Tektin-A DOWNSTREAM CG13243
2L	14976483	2L_14976483_SNP [dm3] 2L_14976483_SNP [dm6]	C	G	7.831e^-5	0.576	INTRON mol
2L	901397	2L_901397_SNP [dm3] 2L_901397_SNP [dm6]	T	C	7.926e^-5	0.576	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	8162539	2R_8162539_SNP [dm3] 2R_12275034_SNP [dm6]	A	G	7.971e^-5	0.576	UTR_3_PRIME Cam DOWNSTREAM Cam
2R	6239777	2R_6239777_SNP [dm3] 2R_10352272_SNP [dm6]	A	T	7.978e^-5	0.576	UPSTREAM CG43172 & 1 other DOWNSTREAM CG43171 & 2 others INTRON CG42732
2R	8183517	2R_8183517_SNP [dm3] 2R_12296012_SNP [dm6]	A	T	7.995e^-5	0.576	DOWNSTREAM CR45271 INTRON CG42700
3R	23651204	3R_23651204_SNP [dm3] 3R_27825482_SNP [dm6]	C	G	8.013e^-5	0.576	INTRON CG34353
2R	8097192	2R_8097192_SNP [dm3] 2R_12209687_SNP [dm6]	A	C	8.033e^-5	0.576	NON_SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10296493	3R_10296493_SNP [dm3] 3R_14470771_SNP [dm6]	C	A	8.073e^-5	0.576	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8114301	2R_8114301_SNP [dm3] 2R_12226796_SNP [dm6]	T	G	8.082e^-5	0.576	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
2L	5191057	2L_5191057_SNP [dm3] 2L_5191057_SNP [dm6]	T	A	8.305e^-5	0.59	NON_SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9845108	3L_9845108_SNP [dm3] 3L_9852008_SNP [dm6]	A	T	8.362e^-5	0.591	INTRON RasGAP1	TF binding site mE1_TFBS_cad
2L	703808	2L_703808_SNP [dm3] 2L_703808_SNP [dm6]	G	A	8.398e^-5	0.591	INTRON ds
2R	7058657	2R_7058657_SNP [dm3] 2R_11171152_SNP [dm6]	G	C	8.436e^-5	0.591	INTRON shn & 1 other
3L	754807	3L_754807_SNP [dm3] 3L_754807_SNP [dm6]	G	A	8.448e^-5	0.591	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8092784	2R_8092784_INS [dm3] 2R_12205279_INS [dm6]	A	AT	8.549e^-5	0.593	UPSTREAM CR45276 INTERGENIC
2R	8167586	2R_8167586_SNP [dm3] 2R_12280081_SNP [dm6]	A	G	8.593e^-5	0.593	START_GAINED CG42700 UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo
2L	9695561	2L_9695561_SNP [dm3] 2L_9695561_SNP [dm6]	C	T	8.673e^-5	0.593	INTRON Pka-C1
X	2246583	X_2246583_SNP [dm3] X_2352550_SNP [dm6]	T	C	8.674e^-5	0.593	INTRON ptr	TF binding site mE1_TFBS_sens
2R	8096002	2R_8096002_SNP [dm3] 2R_12208497_SNP [dm6]	C	A	8.677e^-5	0.593	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2R	8101437	2R_8101437_SNP [dm3] 2R_12213932_SNP [dm6]	G	A	8.726e^-5	0.593	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14976482	2L_14976482_SNP [dm3] 2L_14976482_SNP [dm6]	G	C	8.770e^-5	0.593	INTRON mol
3L	14480236	3L_14480236_SNP [dm3] 3L_14487136_SNP [dm6]	T	G	8.790e^-5	0.593	INTRON bbg
2L	760064	2L_760064_SNP [dm3] 2L_760064_SNP [dm6]	G	C	8.827e^-5	0.593	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo
3R	21623025	3R_21623025_MNP [dm3] 3R_25797303_MNP [dm6]	GAA	CTG	8.829e^-5	0.593	EXON CR43847
2R	10160265	2R_10160265_SNP [dm3] 2R_14272760_SNP [dm6]	A	T	8.857e^-5	0.593	NON_SYNONYMOUS_CODING conv
2R	8113034	2R_8113034_DEL [dm3] 2R_12225529_DEL [dm6]	TGCGTAAA	T	8.877e^-5	0.593	INTRON CG8854
X	3270382	X_3270382_SNP [dm3] X_3376349_SNP [dm6]	C	T	8.907e^-5	0.593	INTRON dm & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	639447	3R_639447_SNP [dm3] 3R_4813725_SNP [dm6]	A	G	8.987e^-5	0.593	START_GAINED CG1129 UTR_5_PRIME CG1129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	8097727	2R_8097727_SNP [dm3] 2R_12210222_SNP [dm6]	A	C	8.993e^-5	0.593	INTRON Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13483745	2R_13483745_SNP [dm3] 2R_17596240_SNP [dm6]	A	G	9.013e^-5	0.593	SYNONYMOUS_CODING CG11423 INTRON lack
2L	2935761	2L_2935761_SNP [dm3] 2L_2935761_SNP [dm6]	A	G	9.089e^-5	0.593	INTRON lilli
3L	6022214	3L_6022214_SNP [dm3] 3L_6029114_SNP [dm6]	G	A	9.103e^-5	0.593	INTERGENIC
2R	13184702	2R_13184702_DEL [dm3] 2R_17297197_DEL [dm6]	GTG	G	9.165e^-5	0.593	INTRON mbl
2R	8094593	2R_8094593_SNP [dm3] 2R_12207088_SNP [dm6]	A	C	9.168e^-5	0.593	EXON CR45276	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8153946	2R_8153946_SNP [dm3] 2R_12266441_SNP [dm6]	T	G	9.239e^-5	0.593	INTRON Cam
X	12677392	X_12677392_SNP [dm3] X_12783359_SNP [dm6]	C	T	9.257e^-5	0.593	NON_SYNONYMOUS_CODING CG32647
2L	9216255	2L_9216255_SNP [dm3] 2L_9216255_SNP [dm6]	G	A	9.259e^-5	0.593	INTRON tai
X	13221413	X_13221413_SNP [dm3] X_13327380_SNP [dm6]	T	C	9.272e^-5	0.593	SYNONYMOUS_CODING IP3K2
3L	4497829	3L_4497829_SNP [dm3] 3L_4497829_SNP [dm6]	G	T	9.291e^-5	0.593	UPSTREAM CG13721 INTERGENIC	TF binding site mE1_TFBS_inv
2R	2606874	2R_2606874_SNP [dm3] 2R_6719369_SNP [dm6]	A	G	9.321e^-5	0.593	SYNONYMOUS_CODING Zip42C.2	TF binding site mE1_TFBS_cad
2R	8092581	2R_8092581_SNP [dm3] 2R_12205076_SNP [dm6]	C	T	9.330e^-5	0.593	INTERGENIC
2R	8108409	2R_8108409_SNP [dm3] 2R_12220904_SNP [dm6]	C	T	9.400e^-5	0.596	INTERGENIC
2R	8095966	2R_8095966_SNP [dm3] 2R_12208461_SNP [dm6]	G	A	9.457e^-5	0.597	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2R	8114468	2R_8114468_SNP [dm3] 2R_12226963_SNP [dm6]	C	T	9.554e^-5	0.599	UPSTREAM CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
3R	3051099	3R_3051099_SNP [dm3] 3R_7225377_SNP [dm6]	C	T	9.555e^-5	0.599	INTRON CG14608
2R	8084645	2R_8084645_SNP [dm3] 2R_12197140_SNP [dm6]	G	A	9.592e^-5	0.6	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
2R	17253697	2R_17253697_SNP [dm3] 2R_21366192_SNP [dm6]	T	A	9.705e^-5	0.601	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	4793788	X_4793788_INS [dm3] X_4899755_INS [dm6]	A	ACAAA	9.707e^-5	0.601	INTRON CG42594
3L	754840	3L_754840_SNP [dm3] 3L_754840_SNP [dm6]	G	A	9.746e^-5	0.601	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8086863	2R_8086863_INS [dm3] 2R_12199358_INS [dm6]	A	AGA	9.763e^-5	0.601	UTR_3_PRIME RpS11 UPSTREAM CG8858 & 1 other DOWNSTREAM RpS11 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14232032	2R_14232032_DEL [dm3] 2R_18344527_DEL [dm6]	ATGCT	A	9.773e^-5	0.601	INTRON sbb
3R	23651089	3R_23651089_SNP [dm3] 3R_27825367_SNP [dm6]	C	T	9.804e^-5	0.601	INTRON CG34353
2R	5647638	2R_5647638_SNP [dm3] 2R_9760133_SNP [dm6]	A	G	9.840e^-5	0.601	INTRON trpl
2R	8096106	2R_8096106_SNP [dm3] 2R_12208601_SNP [dm6]	A	G	9.893e^-5	0.601	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15387157	2R_15387157_SNP [dm3] 2R_19499652_SNP [dm6]	C	T	9.910e^-5	0.601	SYNONYMOUS_CODING CG15120 DOWNSTREAM CG16926
2L	8661060	2L_8661060_SNP [dm3] 2L_8661060_SNP [dm6]	C	A	9.954e^-5	0.601	INTRON Sema-1a
3R	17216193	3R_17216193_SNP [dm3] 3R_21390471_SNP [dm6]	G	A	9.976e^-5	0.601	DOWNSTREAM bap INTERGENIC
3L	3022201	3L_3022201_SNP [dm3] 3L_3022201_SNP [dm6]	T	G	9.992e^-5	0.601	INTERGENIC
3L	10387365	3L_10387365_INS [dm3] 3L_10394265_INS [dm6]	A	ATAA	1.005e^-4	0.602	INTERGENIC
3R	25115369	3R_25115369_SNP [dm3] 3R_29289647_SNP [dm6]	G	T	1.022e^-4	0.606	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8372015	3L_8372015_DEL [dm3] 3L_8378915_DEL [dm6]	AATCGGGATTACTTTA...	A	1.024e^-4	0.606	INTRON ImpE1
2L	21325893	2L_21325893_SNP [dm3] 2L_21325893_SNP [dm6]	G	T	1.024e^-4	0.606	UPSTREAM CR42696 INTERGENIC
3R	26700565	3R_26700565_SNP [dm3] 3R_30874843_SNP [dm6]	T	C	1.026e^-4	0.606	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
X	6270951	X_6270951_SNP [dm3] X_6376918_SNP [dm6]	T	A	1.030e^-4	0.606	INTERGENIC
X	7742496	X_7742496_SNP [dm3] X_7848463_SNP [dm6]	G	C	1.032e^-4	0.606	INTERGENIC
2R	8112685	2R_8112685_SNP [dm3] 2R_12225180_SNP [dm6]	T	C	1.036e^-4	0.606	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
3L	16085071	3L_16085071_SNP [dm3] 3L_16091971_SNP [dm6]	G	A	1.037e^-4	0.606	INTRON ClC-c
3R	27477285	3R_27477285_SNP [dm3] 3R_31651563_SNP [dm6]	A	G	1.041e^-4	0.606	INTRON kek6
2R	8164546	2R_8164546_SNP [dm3] 2R_12277041_SNP [dm6]	A	C	1.051e^-4	0.607	UTR_3_PRIME Cam DOWNSTREAM Cam
2R	8090564	2R_8090564_SNP [dm3] 2R_12203059_SNP [dm6]	G	A	1.055e^-4	0.607	INTERGENIC
3L	21813583	3L_21813583_SNP [dm3] 3L_21820483_SNP [dm6]	G	A	1.058e^-4	0.607	INTERGENIC
2L	747630	2L_747630_SNP [dm3] 2L_747630_SNP [dm6]	C	A	1.073e^-4	0.607	INTERGENIC
2R	8100454	2R_8100454_SNP [dm3] 2R_12212949_SNP [dm6]	G	T	1.073e^-4	0.607	UPSTREAM Sr-CII INTERGENIC
2L	6586646	2L_6586646_SNP [dm3] 2L_6586646_SNP [dm6]	C	G	1.076e^-4	0.607	UTR_5_PRIME CG11319
X	2245699	X_2245699_SNP [dm3] X_2351666_SNP [dm6]	G	A	1.077e^-4	0.607	INTRON ptr
2L	8661057	2L_8661057_SNP [dm3] 2L_8661057_SNP [dm6]	G	T	1.078e^-4	0.607	INTRON Sema-1a
2R	8133841	2R_8133841_SNP [dm3] 2R_12246336_SNP [dm6]	C	T	1.078e^-4	0.607	DOWNSTREAM CR44315 INTERGENIC
2R	8123257	2R_8123257_SNP [dm3] 2R_12235752_SNP [dm6]	G	T	1.080e^-4	0.607	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	5675697	2R_5675697_SNP [dm3] 2R_9788192_SNP [dm6]	A	C	1.081e^-4	0.607	UPSTREAM CR44208 INTRON CG1688
2R	8105848	2R_8105848_SNP [dm3] 2R_12218343_SNP [dm6]	A	G	1.081e^-4	0.607	INTERGENIC
3R	649397	3R_649397_SNP [dm3] 3R_4823675_SNP [dm6]	T	C	1.093e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	8092306	2R_8092306_SNP [dm3] 2R_12204801_SNP [dm6]	C	T	1.097e^-4	0.611	INTERGENIC
X	9305480	X_9305480_INS [dm3] X_9411447_INS [dm6]	T	TTGGGAGGG	1.104e^-4	0.611	INTRON mgl
2R	13353829	2R_13353829_INS [dm3] 2R_17466324_INS [dm6]	A	AT	1.106e^-4	0.611	UTR_3_PRIME Tes DOWNSTREAM CG14478	TF binding site BDTNP1_TFBS_dl
2L	8061443	2L_8061443_SNP [dm3] 2L_8061443_SNP [dm6]	G	A	1.108e^-4	0.611	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_chinmo
2R	16651923	2R_16651923_SNP [dm3] 2R_20764418_SNP [dm6]	C	A	1.109e^-4	0.611	INTERGENIC
3R	5498461	3R_5498461_SNP [dm3] 3R_9672739_SNP [dm6]	G	C	1.118e^-4	0.611	SYNONYMOUS_CODING CG9492
2L	8661063	2L_8661063_SNP [dm3] 2L_8661063_SNP [dm6]	A	C	1.119e^-4	0.611	INTRON Sema-1a
2L	1435300	2L_1435300_SNP [dm3] 2L_1435300_SNP [dm6]	A	T	1.119e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12896929	3L_12896929_SNP [dm3] 3L_12903829_SNP [dm6]	A	T	1.121e^-4	0.611	UPSTREAM CG32117 INTERGENIC
2R	8106419	2R_8106419_INS [dm3] 2R_12218914_INS [dm6]	T	TGGAATA	1.125e^-4	0.612	INTERGENIC
2R	13688272	2R_13688272_SNP [dm3] 2R_17800767_SNP [dm6]	C	T	1.139e^-4	0.615	UPSTREAM grh DOWNSTREAM Dhit EXON CR45270	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8149542	2R_8149542_SNP [dm3] 2R_12262037_SNP [dm6]	G	T	1.139e^-4	0.615	INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	21995541	3R_21995541_SNP [dm3] 3R_26169819_SNP [dm6]	A	C	1.147e^-4	0.615	INTERGENIC
3L	21403134	3L_21403134_SNP [dm3] 3L_21410034_SNP [dm6]	C	T	1.147e^-4	0.615	INTRON rgn
2R	8087287	2R_8087287_INS [dm3] 2R_12199782_INS [dm6]	T	TAT	1.153e^-4	0.615	UPSTREAM CG8858 & 2 others INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	17215198	3R_17215198_SNP [dm3] 3R_21389476_SNP [dm6]	A	G	1.153e^-4	0.615	INTRON bap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21988409	3R_21988409_SNP [dm3] 3R_26162687_SNP [dm6]	T	G	1.164e^-4	0.615	INTERGENIC
2R	8105936	2R_8105936_SNP [dm3] 2R_12218431_SNP [dm6]	T	A	1.168e^-4	0.615	INTERGENIC
2R	7322207	2R_7322207_SNP [dm3] 2R_11434702_SNP [dm6]	A	T	1.171e^-4	0.615	INTERGENIC
3L	5607956	3L_5607956_SNP [dm3] 3L_5614856_SNP [dm6]	C	T	1.173e^-4	0.615	INTERGENIC
3L	14390033	3L_14390033_SNP [dm3] 3L_14396933_SNP [dm6]	T	C	1.174e^-4	0.615	INTERGENIC
2R	8092572	2R_8092572_SNP [dm3] 2R_12205067_SNP [dm6]	C	T	1.176e^-4	0.615	INTERGENIC
X	2488585	X_2488585_DEL [dm3] X_2594552_DEL [dm6]	TTTAT	T	1.182e^-4	0.615	INTRON egh
3R	26571193	3R_26571193_SNP [dm3] 3R_30745471_SNP [dm6]	A	G	1.182e^-4	0.615	UPSTREAM Npc2g DOWNSTREAM CG15543 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8167458	2R_8167458_SNP [dm3] 2R_12279953_SNP [dm6]	C	T	1.184e^-4	0.615	UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo
2L	6594086	2L_6594086_SNP [dm3] 2L_6594086_SNP [dm6]	C	A	1.185e^-4	0.615	INTRON CG11319	TF binding site BDTNP1_TFBS_dl
3L	18999365	3L_18999365_SNP [dm3] 3L_19006265_SNP [dm6]	A	T	1.186e^-4	0.615	INTRON nkd
2L	7394815	2L_7394815_SNP [dm3] 2L_7394815_SNP [dm6]	A	C	1.199e^-4	0.617	INTRON CG5160
3L	2426075	3L_2426075_SNP [dm3] 3L_2426075_SNP [dm6]	G	T	1.201e^-4	0.617	INTRON CG45186	TF binding site mE1_TFBS_bab1
2R	6377616	2R_6377616_SNP [dm3] 2R_10490111_SNP [dm6]	T	G	1.215e^-4	0.617	SYNONYMOUS_CODING lola INTRON lola	TF binding site mE1_TFBS_sens
2R	10159742	2R_10159742_SNP [dm3] 2R_14272237_SNP [dm6]	T	G	1.223e^-4	0.617	SYNONYMOUS_CODING conv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4022277	2L_4022277_SNP [dm3] 2L_4022277_SNP [dm6]	G	A	1.227e^-4	0.617	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7468668	3L_7468668_DEL [dm3] 3L_7475568_DEL [dm6]	TTGCTAT	T	1.227e^-4	0.617	UTR_5_PRIME CG43292 UPSTREAM CG43292 INTRAGENIC CG43292 INTERGENIC
3L	1365195	3L_1365195_SNP [dm3] 3L_1365195_SNP [dm6]	C	T	1.231e^-4	0.617	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	13934564	3R_13934564_INS [dm3] 3R_18108842_INS [dm6]	A	ATATAAA	1.234e^-4	0.617	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
2R	3031011	2R_3031011_SNP [dm3] 2R_7143506_SNP [dm6]	C	T	1.236e^-4	0.617	INTERGENIC
X	11509516	X_11509516_SNP [dm3] X_11615483_SNP [dm6]	T	A	1.236e^-4	0.617	UPSTREAM Met DOWNSTREAM CG1703 INTRON RPA3	TF binding site BDTNP1_TFBS_dl
X	11904610	X_11904610_SNP [dm3] X_12010577_SNP [dm6]	C	T	1.236e^-4	0.617	SYNONYMOUS_CODING CG1492 DOWNSTREAM CG1806
2R	8130550	2R_8130550_SNP [dm3] 2R_12243045_SNP [dm6]	T	A	1.238e^-4	0.617	DOWNSTREAM CG43244 INTRON CG43316
2R	8122434	2R_8122434_SNP [dm3] 2R_12234929_SNP [dm6]	C	T	1.240e^-4	0.617	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	13150484	3R_13150484_SNP [dm3] 3R_17324762_SNP [dm6]	G	T	1.241e^-4	0.617	INTRON beat-IIa
2R	18563605	2R_18563605_SNP [dm3] 2R_22676100_SNP [dm6]	T	G	1.244e^-4	0.617	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18621800	3R_18621800_SNP [dm3] 3R_22796078_SNP [dm6]	T	C	1.244e^-4	0.617	INTERGENIC
X	22381879	X_22381879_SNP [dm3] X_22980043_SNP [dm6]	G	C	1.250e^-4	0.618	DOWNSTREAM stnA & 1 other INTERGENIC
2L	1278047	2L_1278047_SNP [dm3] 2L_1278047_SNP [dm6]	C	A	1.256e^-4	0.618	INTRON robo3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1284127	2L_1284127_DEL [dm3] 2L_1284127_DEL [dm6]	ATAATAAAGACCGA...	GTTT	1.258e^-4	0.618	INTRON robo3
2R	15174933	2R_15174933_SNP [dm3] 2R_19287428_SNP [dm6]	A	T	1.258e^-4	0.618	UPSTREAM CG10474 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10346526	3L_10346526_SNP [dm3] 3L_10353426_SNP [dm6]	G	A	1.261e^-4	0.618	INTRON CR44327
2R	8106520	2R_8106520_SNP [dm3] 2R_12219015_SNP [dm6]	G	C	1.274e^-4	0.622	INTERGENIC
2R	8093914	2R_8093914_SNP [dm3] 2R_12206409_SNP [dm6]	G	C	1.285e^-4	0.623	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15429541	2L_15429541_SNP [dm3] 2L_15429541_SNP [dm6]	T	A	1.292e^-4	0.623	INTERGENIC
3L	5932666	3L_5932666_INS [dm3] 3L_5939566_INS [dm6]	A	AATGAACA	1.293e^-4	0.623	INTRON CG33993
2R	8095506	2R_8095506_SNP [dm3] 2R_12208001_SNP [dm6]	T	A	1.299e^-4	0.623	DOWNSTREAM CR45276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	1943052	3R_1943052_SNP [dm3] 3R_6117330_SNP [dm6]	A	G	1.301e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9910607	3L_9910607_DEL [dm3] 3L_9917507_DEL [dm6]	CTT	C	1.320e^-4	0.623	INTRON CG34356
X	6882191	X_6882191_SNP [dm3] X_6988158_SNP [dm6]	C	T	1.320e^-4	0.623	DOWNSTREAM bou INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8122459	2R_8122459_SNP [dm3] 2R_12234954_SNP [dm6]	G	A	1.326e^-4	0.623	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	7445351	2L_7445351_SNP [dm3] 2L_7445351_SNP [dm6]	C	T	1.330e^-4	0.623	UTR_3_PRIME CG5973 DOWNSTREAM santa-maria & 1 other
3L	4393049	3L_4393049_SNP [dm3] 3L_4393049_SNP [dm6]	G	T	1.333e^-4	0.623	INTRON slow
X	7772256	X_7772256_SNP [dm3] X_7878223_SNP [dm6]	T	C	1.335e^-4	0.623	SYNONYMOUS_CODING Ir7d
3R	26075786	3R_26075786_SNP [dm3] 3R_30250064_SNP [dm6]	T	C	1.337e^-4	0.623	UPSTREAM CG9682 DOWNSTREAM CG34299 INTRON CG34299	TF binding site mE1_TFBS_inv
2L	16384026	2L_16384026_SNP [dm3] 2L_16384026_SNP [dm6]	T	C	1.340e^-4	0.623	INTERGENIC
3R	3975489	3R_3975489_SNP [dm3] 3R_8149767_SNP [dm6]	T	C	1.340e^-4	0.623	INTRON grn	TF binding site BDTNP1_TFBS_dl
2R	8087757	2R_8087757_SNP [dm3] 2R_12200252_SNP [dm6]	A	G	1.348e^-4	0.623	UPSTREAM snoRNA:Me28S-C3420b & 1 other INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	1502310	3L_1502310_SNP [dm3] 3L_1502310_SNP [dm6]	C	T	1.349e^-4	0.623	UPSTREAM Psa DOWNSTREAM cue INTRON pUf68	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16274790	3R_16274790_SNP [dm3] 3R_20449068_SNP [dm6]	G	A	1.351e^-4	0.623	INTRON Gfrl
3L	9845098	3L_9845098_SNP [dm3] 3L_9851998_SNP [dm6]	A	G	1.352e^-4	0.623	INTRON RasGAP1	TF binding site mE1_TFBS_cad
3R	26276384	3R_26276384_SNP [dm3] 3R_30450662_SNP [dm6]	T	A	1.355e^-4	0.623	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8351864	3L_8351864_SNP [dm3] 3L_8358764_SNP [dm6]	G	C	1.356e^-4	0.623	UTR_5_PRIME Idh UPSTREAM Idh INTRON Idh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13357198	2R_13357198_SNP [dm3] 2R_17469693_SNP [dm6]	T	G	1.356e^-4	0.623	UTR_5_PRIME qkr54B UPSTREAM qkr54B & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8113333	2R_8113333_SNP [dm3] 2R_12225828_SNP [dm6]	C	T	1.356e^-4	0.623	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5100297	2L_5100297_SNP [dm3] 2L_5100297_SNP [dm6]	C	T	1.365e^-4	0.623	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	8123177	2R_8123177_SNP [dm3] 2R_12235672_SNP [dm6]	C	T	1.366e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	7445620	2L_7445620_SNP [dm3] 2L_7445620_SNP [dm6]	C	T	1.372e^-4	0.623	UTR_3_PRIME CG5973 & 1 other DOWNSTREAM CG5973
3R	18621653	3R_18621653_SNP [dm3] 3R_22795931_SNP [dm6]	T	A	1.372e^-4	0.623	INTERGENIC
2R	8165014	2R_8165014_DEL [dm3] 2R_12277509_DEL [dm6]	CT	C	1.379e^-4	0.623	UTR_3_PRIME Cam DOWNSTREAM Cam
X	17054906	X_17054906_DEL [dm3] X_17160873_DEL [dm6]	AA	A	1.380e^-4	0.623	UTR_5_PRIME baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6574897	2L_6574897_SNP [dm3] 2L_6574897_SNP [dm6]	C	T	1.387e^-4	0.623	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13687746	2R_13687746_SNP [dm3] 2R_17800241_SNP [dm6]	A	C	1.391e^-4	0.623	UTR_3_PRIME Dhit UPSTREAM grh DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8077937	2R_8077937_SNP [dm3] 2R_12190432_SNP [dm6]	T	C	1.392e^-4	0.623	UPSTREAM Cyp6t3 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	14558163	3L_14558163_INS [dm3] 3L_14565063_INS [dm6]	T	TCAG	1.394e^-4	0.623	INTERGENIC
3L	4393022	3L_4393022_SNP [dm3] 3L_4393022_SNP [dm6]	A	G	1.397e^-4	0.623	INTRON slow
3L	4393026	3L_4393026_SNP [dm3] 3L_4393026_SNP [dm6]	A	C	1.397e^-4	0.623	INTRON slow
X	2241540	X_2241540_SNP [dm3] X_2347507_SNP [dm6]	G	A	1.399e^-4	0.623	NON_SYNONYMOUS_CODING ptr	TF binding site mE1_TFBS_sens
2R	8136645	2R_8136645_SNP [dm3] 2R_12249140_SNP [dm6]	T	A	1.399e^-4	0.623	INTERGENIC
2L	1286829	2L_1286829_SNP [dm3] 2L_1286829_SNP [dm6]	A	C	1.400e^-4	0.623	SYNONYMOUS_CODING robo3
3L	5930879	3L_5930879_SNP [dm3] 3L_5937779_SNP [dm6]	G	A	1.404e^-4	0.623	INTRON CG33993
2R	14264388	2R_14264388_SNP [dm3] 2R_18376883_SNP [dm6]	C	T	1.407e^-4	0.623	UPSTREAM CR42736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4100281	2L_4100281_SNP [dm3] 2L_4100281_SNP [dm6]	T	G	1.409e^-4	0.623	INTRON ed
2R	13687788	2R_13687788_SNP [dm3] 2R_17800283_SNP [dm6]	C	T	1.415e^-4	0.624	UTR_3_PRIME Dhit UPSTREAM grh DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18872556	3R_18872556_SNP [dm3] 3R_23046834_SNP [dm6]	G	T	1.424e^-4	0.626	INTRON CG17121
X	17540649	X_17540649_SNP [dm3] X_17646616_SNP [dm6]	G	A	1.427e^-4	0.626	INTRON RhoGAPp190
3R	16899281	3R_16899281_SNP [dm3] 3R_21073559_SNP [dm6]	A	T	1.429e^-4	0.626	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17253864	2R_17253864_SNP [dm3] 2R_21366359_SNP [dm6]	C	A	1.431e^-4	0.626	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13958563	2L_13958563_SNP [dm3] 2L_13958563_SNP [dm6]	A	C	1.439e^-4	0.626	INTRON NimA
2R	7645313	2R_7645313_SNP [dm3] 2R_11757808_SNP [dm6]	C	T	1.445e^-4	0.626	START_GAINED ths UTR_5_PRIME ths	TF binding site mE1_TFBS_Trl
2R	8080226	2R_8080226_SNP [dm3] 2R_12192721_SNP [dm6]	C	G	1.447e^-4	0.626	NON_SYNONYMOUS_CODING CG8858 DOWNSTREAM Cyp6t3	TF binding site mE1_TFBS_cad
2R	8183444	2R_8183444_SNP [dm3] 2R_12295939_SNP [dm6]	T	C	1.450e^-4	0.626	DOWNSTREAM CR45271 INTRON CG42700
X	11509218	X_11509218_SNP [dm3] X_11615185_SNP [dm6]	T	C	1.452e^-4	0.626	UTR_3_PRIME RPA3 UPSTREAM Met DOWNSTREAM RPA3 & 1 other
2R	16944973	2R_16944973_SNP [dm3] 2R_21057468_SNP [dm6]	C	A	1.468e^-4	0.626	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7792875	2L_7792875_SNP [dm3] 2L_7792875_SNP [dm6]	C	T	1.469e^-4	0.626	SYNONYMOUS_CODING LKR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26087311	3R_26087311_SNP [dm3] 3R_30261589_SNP [dm6]	T	C	1.470e^-4	0.626	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	26565277	3R_26565277_SNP [dm3] 3R_30739555_SNP [dm6]	G	A	1.471e^-4	0.626	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8173855	2R_8173855_SNP [dm3] 2R_12286350_SNP [dm6]	A	G	1.474e^-4	0.626	INTRON CG42700
3R	13934512	3R_13934512_SNP [dm3] 3R_18108790_SNP [dm6]	T	C	1.481e^-4	0.626	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
X	18124687	X_18124687_SNP [dm3] X_18230654_SNP [dm6]	A	G	1.485e^-4	0.626	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4794079	X_4794079_SNP [dm3] X_4900046_SNP [dm6]	A	T	1.489e^-4	0.626	INTRON CG42594
2R	8097738	2R_8097738_SNP [dm3] 2R_12210233_SNP [dm6]	A	C	1.492e^-4	0.626	INTRON Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8910582	2L_8910582_SNP [dm3] 2L_8910582_SNP [dm6]	C	A	1.493e^-4	0.626	INTRON CG34398
3R	13934848	3R_13934848_SNP [dm3] 3R_18109126_SNP [dm6]	T	A	1.495e^-4	0.626	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
2R	8078685	2R_8078685_SNP [dm3] 2R_12191180_SNP [dm6]	G	A	1.498e^-4	0.626	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2R	8101433	2R_8101433_SNP [dm3] 2R_12213928_SNP [dm6]	T	C	1.502e^-4	0.626	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8157372	2R_8157372_SNP [dm3] 2R_12269867_SNP [dm6]	T	C	1.509e^-4	0.626	INTRON Cam
3R	15350694	3R_15350694_SNP [dm3] 3R_19524972_SNP [dm6]	C	A	1.510e^-4	0.626	SYNONYMOUS_CODING Dys INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	901375	2L_901375_SNP [dm3] 2L_901375_SNP [dm6]	A	T	1.510e^-4	0.626	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	1286926	2L_1286926_SNP [dm3] 2L_1286926_SNP [dm6]	C	A	1.515e^-4	0.626	NON_SYNONYMOUS_CODING robo3
2R	8115222	2R_8115222_SNP [dm3] 2R_12227717_SNP [dm6]	T	C	1.518e^-4	0.626	UPSTREAM CG8854 INTRON CG8854
2L	18326122	2L_18326122_SNP [dm3] 2L_18326122_SNP [dm6]	A	T	1.521e^-4	0.626	INTRON Fas3
3R	13934514	3R_13934514_SNP [dm3] 3R_18108792_SNP [dm6]	T	G	1.521e^-4	0.626	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
X	6883413	X_6883413_SNP [dm3] X_6989380_SNP [dm6]	T	A	1.522e^-4	0.626	INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9820370	3L_9820370_SNP [dm3] 3L_9827270_SNP [dm6]	T	C	1.524e^-4	0.626	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_cad
2R	10160181	2R_10160181_SNP [dm3] 2R_14272676_SNP [dm6]	C	T	1.525e^-4	0.626	SYNONYMOUS_CODING conv
3R	13934833	3R_13934833_INS [dm3] 3R_18109111_INS [dm6]	T	TC	1.529e^-4	0.626	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
3R	2139162	3R_2139162_SNP [dm3] 3R_6313440_SNP [dm6]	C	T	1.538e^-4	0.628	INTRON Osi17
2R	19589389	2R_19589389_SNP [dm3] 2R_23701866_SNP [dm6]	A	G	1.546e^-4	0.63	UPSTREAM l_2_dtl INTRON CG4091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9978407	X_9978407_SNP [dm3] X_10084374_SNP [dm6]	C	A	1.566e^-4	0.631	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1402827	3L_1402827_SNP [dm3] 3L_1402827_SNP [dm6]	T	G	1.566e^-4	0.631	DOWNSTREAM tRNA:E4:62Ae INTRON Ptp61F
3L	9692454	3L_9692454_SNP [dm3] 3L_9699354_SNP [dm6]	C	T	1.569e^-4	0.631	SYNONYMOUS_CODING UbcD4	TF binding site mE1_TFBS_cad
X	13221530	X_13221530_SNP [dm3] X_13327497_SNP [dm6]	C	T	1.572e^-4	0.631	SYNONYMOUS_CODING IP3K2
2R	790000	2R_790000_SNP [dm3] 2R_4902495_SNP [dm6]	A	T	1.573e^-4	0.631	INTRON CG44102	transposable element FlyBase
2R	1095806	2R_1095806_SNP [dm3] 2R_5208301_SNP [dm6]	C	G	1.578e^-4	0.631	INTRON Nipped-A	transposable element FlyBase
2R	8125618	2R_8125618_SNP [dm3] 2R_12238113_SNP [dm6]	C	T	1.579e^-4	0.631	INTERGENIC
2L	5159342	2L_5159342_SNP [dm3] 2L_5159342_SNP [dm6]	C	A	1.579e^-4	0.631	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	13934867	3R_13934867_SNP [dm3] 3R_18109145_SNP [dm6]	G	A	1.585e^-4	0.631	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
3L	10710985	3L_10710985_SNP [dm3] 3L_10717885_SNP [dm6]	G	C	1.586e^-4	0.631	INTERGENIC
2R	16662830	2R_16662830_SNP [dm3] 2R_20775325_SNP [dm6]	A	C	1.586e^-4	0.631	UTR_3_PRIME CG13443 DOWNSTREAM CG43709
3R	5343292	3R_5343292_SNP [dm3] 3R_9517570_SNP [dm6]	T	G	1.587e^-4	0.631	DOWNSTREAM mir-2283 INTRON JHDM2 & 1 other EXON mir-2283	TF binding site mE1_TFBS_HSA
3R	13934569	3R_13934569_SNP [dm3] 3R_18108847_SNP [dm6]	T	A	1.592e^-4	0.631	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
2L	838191	2L_838191_SNP [dm3] 2L_838191_SNP [dm6]	C	T	1.594e^-4	0.631	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8122478	2R_8122478_SNP [dm3] 2R_12234973_SNP [dm6]	A	T	1.607e^-4	0.633	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_kn
3R	5847249	3R_5847249_SNP [dm3] 3R_10021527_SNP [dm6]	A	C	1.609e^-4	0.633	UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7400407	3L_7400407_SNP [dm3] 3L_7407307_SNP [dm6]	T	C	1.610e^-4	0.633	DOWNSTREAM pncr015:3L INTERGENIC
2R	8121174	2R_8121174_SNP [dm3] 2R_12233669_SNP [dm6]	G	C	1.624e^-4	0.635	DOWNSTREAM CR44313 INTERGENIC
3R	25119453	3R_25119453_SNP [dm3] 3R_29293731_SNP [dm6]	G	A	1.627e^-4	0.635	DOWNSTREAM CG14506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	10160223	2R_10160223_SNP [dm3] 2R_14272718_SNP [dm6]	T	G	1.630e^-4	0.635	SYNONYMOUS_CODING conv
3R	22696227	3R_22696227_SNP [dm3] 3R_26870505_SNP [dm6]	A	G	1.632e^-4	0.635	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	3543095	3R_3543095_DEL [dm3] 3R_7717373_DEL [dm6]	TT	T	1.636e^-4	0.635	INTERGENIC
3R	26265414	3R_26265414_SNP [dm3] 3R_30439692_SNP [dm6]	A	C	1.636e^-4	0.635	INTRON CG15537
3R	16869976	3R_16869976_SNP [dm3] 3R_21044254_SNP [dm6]	T	A	1.652e^-4	0.64	SYNONYMOUS_CODING CG12278 DOWNSTREAM CG31189
2R	15387135	2R_15387135_SNP [dm3] 2R_19499630_SNP [dm6]	A	G	1.656e^-4	0.64	SYNONYMOUS_CODING CG15120 DOWNSTREAM CG16926
2L	3670841	2L_3670841_SNP [dm3] 2L_3670841_SNP [dm6]	A	G	1.659e^-4	0.64	UPSTREAM Sfp24Bc INTRON CG34340
2L	6587294	2L_6587294_INS [dm3] 2L_6587294_INS [dm6]	T	TTTT	1.664e^-4	0.641	INTRON CG11319
3R	5893484	3R_5893484_SNP [dm3] 3R_10067762_SNP [dm6]	A	C	1.671e^-4	0.641	UPSTREAM CG33784 DOWNSTREAM CG33783 INTERGENIC
2L	15840688	2L_15840688_SNP [dm3] 2L_15840688_SNP [dm6]	T	C	1.673e^-4	0.641	DOWNSTREAM CR45694 INTERGENIC
2R	8122444	2R_8122444_MNP [dm3] 2R_12234939_MNP [dm6]	TAAAGG	ATCCCC	1.677e^-4	0.641	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	11509494	X_11509494_SNP [dm3] X_11615461_SNP [dm6]	T	G	1.681e^-4	0.641	UPSTREAM Met DOWNSTREAM CG1703 INTRON RPA3	TF binding site BDTNP1_TFBS_dl
3L	7990775	3L_7990775_SNP [dm3] 3L_7997675_SNP [dm6]	C	T	1.687e^-4	0.641	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	13353312	2R_13353312_SNP [dm3] 2R_17465807_SNP [dm6]	T	C	1.688e^-4	0.641	DOWNSTREAM Tes & 1 other INTERGENIC
3R	5898213	3R_5898213_SNP [dm3] 3R_10072491_SNP [dm6]	C	A	1.688e^-4	0.641	SYNONYMOUS_CODING nerfin-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8147573	2R_8147573_SNP [dm3] 2R_12260068_SNP [dm6]	A	C	1.699e^-4	0.644	UTR_5_PRIME Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	11817322	X_11817322_SNP [dm3] X_11923289_SNP [dm6]	A	C	1.712e^-4	0.647	UPSTREAM Sclp INTRON Sclp
2R	8121885	2R_8121885_SNP [dm3] 2R_12234380_SNP [dm6]	G	A	1.715e^-4	0.647	EXON CR44313
2R	8109725	2R_8109725_SNP [dm3] 2R_12222220_SNP [dm6]	G	C	1.719e^-4	0.647	INTERGENIC
2R	8166660	2R_8166660_INS [dm3] 2R_12279155_INS [dm6]	T	TGTAT	1.721e^-4	0.647	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	6331988	2R_6331988_SNP [dm3] 2R_10444483_SNP [dm6]	T	C	1.728e^-4	0.647	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl
X	4425553	X_4425553_SNP [dm3] X_4531520_SNP [dm6]	C	A	1.740e^-4	0.647	NON_SYNONYMOUS_CODING CG3556 INTRON CR32773
2L	2603518	2L_2603518_SNP [dm3] 2L_2603518_SNP [dm6]	T	C	1.742e^-4	0.647	INTERGENIC
2R	8141432	2R_8141432_SNP [dm3] 2R_12253927_SNP [dm6]	C	A	1.745e^-4	0.647	UPSTREAM CG13168 INTERGENIC
3L	10767904	3L_10767904_SNP [dm3] 3L_10774804_SNP [dm6]	C	T	1.747e^-4	0.647	INTERGENIC
3R	26548263	3R_26548263_SNP [dm3] 3R_30722541_SNP [dm6]	C	T	1.749e^-4	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13390692	3R_13390692_SNP [dm3] 3R_17564970_SNP [dm6]	C	A	1.751e^-4	0.647	INTRON Hmx
3R	22247014	3R_22247014_SNP [dm3] 3R_26421292_SNP [dm6]	A	G	1.757e^-4	0.647	INTERGENIC
2L	4378050	2L_4378050_SNP [dm3] 2L_4378050_SNP [dm6]	T	A	1.758e^-4	0.647	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11705019	3L_11705019_SNP [dm3] 3L_11711919_SNP [dm6]	G	A	1.759e^-4	0.647	UPSTREAM crim DOWNSTREAM CG14132 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	10752894	2L_10752894_SNP [dm3] 2L_10752894_SNP [dm6]	A	G	1.768e^-4	0.647	INTRON CG17124	TF binding site mE1_TFBS_cad
2R	8116163	2R_8116163_SNP [dm3] 2R_12228658_SNP [dm6]	T	A	1.774e^-4	0.647	INTRON CG8854
3L	18999247	3L_18999247_INS [dm3] 3L_19006147_INS [dm6]	T	TCAGGAT	1.780e^-4	0.647	INTRON nkd	TF binding site mE1_TFBS_inv
2R	11441244	2R_11441244_SNP [dm3] 2R_15553739_SNP [dm6]	T	A	1.781e^-4	0.647	INTERGENIC
2R	8121704	2R_8121704_SNP [dm3] 2R_12234199_SNP [dm6]	C	A	1.782e^-4	0.647	EXON CR44313
3R	3128967	3R_3128967_SNP [dm3] 3R_7303245_SNP [dm6]	G	A	1.782e^-4	0.647	INTRON rn
3R	7247940	3R_7247940_SNP [dm3] 3R_11422218_SNP [dm6]	T	G	1.784e^-4	0.647	UTR_5_PRIME CG5270 UPSTREAM ninaG	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6575428	2L_6575428_SNP [dm3] 2L_6575428_SNP [dm6]	A	C	1.785e^-4	0.647	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad
X	2245059	X_2245059_SNP [dm3] X_2351026_SNP [dm6]	G	T	1.793e^-4	0.649	INTRON ptr
X	8807713	X_8807713_SNP [dm3] X_8913680_SNP [dm6]	A	G	1.797e^-4	0.649	INTRON rdgA
2R	16945163	2R_16945163_INS [dm3] 2R_21057658_INS [dm6]	T	TA	1.799e^-4	0.649	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13818237	3L_13818237_SNP [dm3] 3L_13825137_SNP [dm6]	G	A	1.809e^-4	0.651	INTERGENIC
3R	15000493	3R_15000493_SNP [dm3] 3R_19174771_SNP [dm6]	G	A	1.818e^-4	0.653	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_inv
2R	14232948	2R_14232948_SNP [dm3] 2R_18345443_SNP [dm6]	G	A	1.825e^-4	0.653	INTRON sbb
X	7358787	X_7358787_SNP [dm3] X_7464754_SNP [dm6]	C	T	1.829e^-4	0.653	INTERGENIC
3L	2577053	3L_2577053_DEL [dm3] 3L_2577053_DEL [dm6]	AAA	C	1.829e^-4	0.653	INTRON msn	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18363766	2R_18363766_SNP [dm3] 2R_22476261_SNP [dm6]	A	C	1.832e^-4	0.653	UTR_5_PRIME CG45062 DOWNSTREAM CG45063
3R	2292438	3R_2292438_SNP [dm3] 3R_6466716_SNP [dm6]	C	T	1.847e^-4	0.657	INTERGENIC
X	2711592	X_2711592_SNP [dm3] X_2817559_SNP [dm6]	C	G	1.852e^-4	0.657	INTRON kirre
3L	1629717	3L_1629717_SNP [dm3] 3L_1629717_SNP [dm6]	G	A	1.858e^-4	0.657	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8106483	2R_8106483_SNP [dm3] 2R_12218978_SNP [dm6]	T	C	1.864e^-4	0.657	INTERGENIC
3R	18093191	3R_18093191_SNP [dm3] 3R_22267469_SNP [dm6]	A	G	1.865e^-4	0.657	INTRON SKIP
2R	7379418	2R_7379418_SNP [dm3] 2R_11491913_SNP [dm6]	C	T	1.891e^-4	0.657	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6243604	2R_6243604_DEL [dm3] 2R_10356099_DEL [dm6]	ACGAATTTACGCAG...	A	1.892e^-4	0.657	UPSTREAM CG12902 & 1 other DOWNSTREAM CG42733 INTRON CG42732
3R	13934526	3R_13934526_SNP [dm3] 3R_18108804_SNP [dm6]	T	C	1.905e^-4	0.657	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
2L	15840859	2L_15840859_SNP [dm3] 2L_15840859_SNP [dm6]	G	A	1.911e^-4	0.657	DOWNSTREAM CR45694 INTERGENIC
2R	8101421	2R_8101421_SNP [dm3] 2R_12213916_SNP [dm6]	T	C	1.914e^-4	0.657	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10168873	2R_10168873_SNP [dm3] 2R_14281368_SNP [dm6]	C	T	1.915e^-4	0.657	INTRON Ih	TF binding site mE1_TFBS_HSA
X	8104491	X_8104491_SNP [dm3] X_8210458_SNP [dm6]	G	A	1.918e^-4	0.657	NON_SYNONYMOUS_CODING sdt START_GAINED sdt UTR_5_PRIME sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	16745327	3L_16745327_SNP [dm3] 3L_16752227_SNP [dm6]	T	C	1.922e^-4	0.657	INTERGENIC
3L	7992059	3L_7992059_SNP [dm3] 3L_7998959_SNP [dm6]	C	T	1.926e^-4	0.657	INTRON nmo
2L	847986	2L_847986_SNP [dm3] 2L_847986_SNP [dm6]	C	A	1.928e^-4	0.657	INTRON drongo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8119561	2R_8119561_SNP [dm3] 2R_12232056_SNP [dm6]	C	T	1.930e^-4	0.657	INTERGENIC
3L	6472253	3L_6472253_SNP [dm3] 3L_6479153_SNP [dm6]	A	C	1.938e^-4	0.657	INTRON CG42747
3R	15342867	3R_15342867_SNP [dm3] 3R_19517145_SNP [dm6]	T	C	1.939e^-4	0.657	INTRON Dys
2R	8092527	2R_8092527_SNP [dm3] 2R_12205022_SNP [dm6]	C	T	1.946e^-4	0.657	INTERGENIC
3R	2426483	3R_2426483_SNP [dm3] 3R_6600761_SNP [dm6]	C	T	1.946e^-4	0.657	UPSTREAM CG31482 INTERGENIC
2L	3666094	2L_3666094_SNP [dm3] 2L_3666094_SNP [dm6]	G	C	1.961e^-4	0.657	INTRON CG34340
2R	20370244	2R_20370244_SNP [dm3] 2R_24482721_SNP [dm6]	T	A	1.963e^-4	0.657	INTRON CG13579	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8122254	2R_8122254_SNP [dm3] 2R_12234749_SNP [dm6]	T	C	1.964e^-4	0.657	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	6246860	2R_6246860_SNP [dm3] 2R_10359355_SNP [dm6]	A	G	1.965e^-4	0.657	UPSTREAM CG43396 INTRON CG42732	TF binding site BDTNP1_TFBS_twi
3R	25030458	3R_25030458_SNP [dm3] 3R_29204736_SNP [dm6]	G	A	1.965e^-4	0.657	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5420377	2L_5420377_SNP [dm3] 2L_5420377_SNP [dm6]	T	G	1.968e^-4	0.657	INTERGENIC
3R	12925736	3R_12925736_SNP [dm3] 3R_17100014_SNP [dm6]	C	G	1.969e^-4	0.657	INTRON cher
X	11390441	X_11390441_SNP [dm3] X_11496408_SNP [dm6]	C	T	1.982e^-4	0.657	INTRON Drak	TF binding site BDTNP1_TFBS_dl
2R	8087306	2R_8087306_SNP [dm3] 2R_12199801_SNP [dm6]	G	C	1.984e^-4	0.657	UPSTREAM CG8858 & 2 others INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	19589643	2R_19589643_DEL [dm3] 2R_23702120_DEL [dm6]	TTTTTGT	T	1.992e^-4	0.657	UTR_5_PRIME CG4091 UPSTREAM l_2_dtl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2711607	X_2711607_SNP [dm3] X_2817574_SNP [dm6]	G	A	1.993e^-4	0.657	INTRON kirre
2L	743414	2L_743414_SNP [dm3] 2L_743414_SNP [dm6]	G	A	1.998e^-4	0.657	UTR_5_PRIME Eaat2
3R	3777467	3R_3777467_SNP [dm3] 3R_7951745_SNP [dm6]	G	A	1.998e^-4	0.657	INTRON dsx
2R	19792607	2R_19792607_SNP [dm3] 2R_23905084_SNP [dm6]	C	G	1.999e^-4	0.657	SYNONYMOUS_CODING CG13562 DOWNSTREAM Nap1
2L	16384035	2L_16384035_SNP [dm3] 2L_16384035_SNP [dm6]	T	C	2.002e^-4	0.657	INTERGENIC
2L	10501128	2L_10501128_SNP [dm3] 2L_10501128_SNP [dm6]	T	C	2.003e^-4	0.657	INTRON Myo31DF
2R	8093892	2R_8093892_SNP [dm3] 2R_12206387_SNP [dm6]	G	A	2.006e^-4	0.657	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	2.006e^-4	0.657	INTERGENIC
2R	13687918	2R_13687918_INS [dm3] 2R_17800413_INS [dm6]	C	CGCACAC	2.006e^-4	0.657	UTR_3_PRIME Dhit UPSTREAM grh DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	901370	2L_901370_DEL [dm3] 2L_901370_DEL [dm6]	AAG	C	2.007e^-4	0.657	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14163910	3L_14163910_SNP [dm3] 3L_14170810_SNP [dm6]	C	T	2.012e^-4	0.657	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	20265980	2R_20265980_SNP [dm3] 2R_24378457_SNP [dm6]	G	A	2.016e^-4	0.657	SYNONYMOUS_CODING CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo
2R	8122462	2R_8122462_SNP [dm3] 2R_12234957_SNP [dm6]	T	G	2.024e^-4	0.657	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	5683373	X_5683373_SNP [dm3] X_5789340_SNP [dm6]	G	A	2.035e^-4	0.657	UTR_3_PRIME CG42699 UPSTREAM CG15767
2R	8181213	2R_8181213_SNP [dm3] 2R_12293708_SNP [dm6]	A	G	2.037e^-4	0.657	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18478761	2R_18478761_SNP [dm3] 2R_22591256_SNP [dm6]	C	T	2.039e^-4	0.657	INTRON dnr1
3L	4497536	3L_4497536_SNP [dm3] 3L_4497536_SNP [dm6]	C	T	2.042e^-4	0.657	SYNONYMOUS_CODING CG13721	TF binding site mE1_TFBS_inv
2L	1480107	2L_1480107_SNP [dm3] 2L_1480107_SNP [dm6]	A	G	2.046e^-4	0.657	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14552660	3L_14552660_SNP [dm3] 3L_14559560_SNP [dm6]	A	T	2.046e^-4	0.657	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1688548	3L_1688548_SNP [dm3] 3L_1688548_SNP [dm6]	T	A	2.053e^-4	0.657	UPSTREAM CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi
3R	13150458	3R_13150458_SNP [dm3] 3R_17324736_SNP [dm6]	G	T	2.059e^-4	0.657	INTRON beat-IIa
3R	26181290	3R_26181290_SNP [dm3] 3R_30355568_SNP [dm6]	A	G	2.060e^-4	0.657	INTRON hdc
2R	8137699	2R_8137699_SNP [dm3] 2R_12250194_SNP [dm6]	T	C	2.060e^-4	0.657	INTERGENIC
3L	10682008	3L_10682008_SNP [dm3] 3L_10688908_SNP [dm6]	C	G	2.064e^-4	0.657	INTRON simj	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	8126176	2R_8126176_SNP [dm3] 2R_12238671_SNP [dm6]	T	C	2.064e^-4	0.657	INTERGENIC
2L	839365	2L_839365_SNP [dm3] 2L_839365_SNP [dm6]	G	C	2.064e^-4	0.657	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5818752	3L_5818752_SNP [dm3] 3L_5825652_SNP [dm6]	G	A	2.067e^-4	0.657	INTRON vn
X	2245169	X_2245169_DEL [dm3] X_2351136_DEL [dm6]	TT	T	2.067e^-4	0.657	INTRON ptr
2R	8088135	2R_8088135_SNP [dm3] 2R_12200630_SNP [dm6]	A	G	2.070e^-4	0.657	UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	9779733	2R_9779733_SNP [dm3] 2R_13892228_SNP [dm6]	A	G	2.076e^-4	0.657	SYNONYMOUS_CODING shot INTRON shot
2R	8163745	2R_8163745_SNP [dm3] 2R_12276240_SNP [dm6]	G	A	2.079e^-4	0.657	UTR_3_PRIME Cam
2R	6395212	2R_6395212_SNP [dm3] 2R_10507707_SNP [dm6]	T	C	2.080e^-4	0.657	UTR_3_PRIME lola INTRON lola
2L	767044	2L_767044_INS [dm3] 2L_767044_INS [dm6]	C	CTCC	2.081e^-4	0.657	INTERGENIC
2R	12872532	2R_12872532_SNP [dm3] 2R_16985027_SNP [dm6]	A	T	2.083e^-4	0.657	INTRON Cbp53E
3L	7165954	3L_7165954_SNP [dm3] 3L_7172854_SNP [dm6]	T	C	2.084e^-4	0.657	INTRON Dscam2
3L	7165956	3L_7165956_INS [dm3] 3L_7172856_INS [dm6]	T	CCTTCAGC	2.084e^-4	0.657	INTRON Dscam2
2L	901348	2L_901348_SNP [dm3] 2L_901348_SNP [dm6]	A	G	2.086e^-4	0.657	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	839096	3R_839096_SNP [dm3] 3R_5013374_SNP [dm6]	T	A	2.086e^-4	0.657	INTERGENIC
3R	14741032	3R_14741032_SNP [dm3] 3R_18915310_SNP [dm6]	C	T	2.091e^-4	0.657	UTR_5_PRIME Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	4935732	2L_4935732_SNP [dm3] 2L_4935732_SNP [dm6]	G	A	2.092e^-4	0.657	SYNONYMOUS_CODING hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8477019	3R_8477019_SNP [dm3] 3R_12651297_SNP [dm6]	A	G	2.095e^-4	0.657	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
2R	8120262	2R_8120262_SNP [dm3] 2R_12232757_SNP [dm6]	T	G	2.102e^-4	0.657	INTERGENIC
2R	8126966	2R_8126966_SNP [dm3] 2R_12239461_SNP [dm6]	C	A	2.104e^-4	0.657	UPSTREAM CG13170 INTERGENIC
2L	3670850	2L_3670850_SNP [dm3] 2L_3670850_SNP [dm6]	C	G	2.106e^-4	0.657	UPSTREAM Sfp24Bc INTRON CG34340
2R	8145150	2R_8145150_SNP [dm3] 2R_12257645_SNP [dm6]	G	A	2.108e^-4	0.657	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
3R	6861268	3R_6861268_SNP [dm3] 3R_11035546_SNP [dm6]	T	G	2.109e^-4	0.657	INTRON CG34114
2L	5113894	2L_5113894_SNP [dm3] 2L_5113894_SNP [dm6]	G	C	2.114e^-4	0.657	INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16945232	2R_16945232_SNP [dm3] 2R_21057727_SNP [dm6]	G	A	2.120e^-4	0.657	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21357166	3R_21357166_SNP [dm3] 3R_25531444_SNP [dm6]	G	T	2.121e^-4	0.657	INTRON msi
X	16168243	X_16168243_SNP [dm3] X_16274210_SNP [dm6]	C	G	2.127e^-4	0.658	DOWNSTREAM Mfe2 INTRON kat80
3L	1502425	3L_1502425_SNP [dm3] 3L_1502425_SNP [dm6]	G	C	2.130e^-4	0.658	UPSTREAM Psa DOWNSTREAM cue INTRON pUf68	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	8129433	2R_8129433_SNP [dm3] 2R_12241928_SNP [dm6]	A	G	2.139e^-4	0.659	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
X	16062619	X_16062619_SNP [dm3] X_16168586_SNP [dm6]	A	T	2.151e^-4	0.659	INTERGENIC
2R	17253948	2R_17253948_SNP [dm3] 2R_21366443_SNP [dm6]	T	A	2.154e^-4	0.659	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10711022	3L_10711022_SNP [dm3] 3L_10717922_SNP [dm6]	T	C	2.154e^-4	0.659	INTERGENIC
2R	8078684	2R_8078684_SNP [dm3] 2R_12191179_SNP [dm6]	A	G	2.155e^-4	0.659	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3R	1770744	3R_1770744_SNP [dm3] 3R_5945022_SNP [dm6]	T	A	2.155e^-4	0.659	INTRON CG34113
2L	15429802	2L_15429802_SNP [dm3] 2L_15429802_SNP [dm6]	G	C	2.163e^-4	0.659	INTERGENIC
2L	901326	2L_901326_SNP [dm3] 2L_901326_SNP [dm6]	C	A	2.163e^-4	0.659	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	10795437	3L_10795437_SNP [dm3] 3L_10802337_SNP [dm6]	G	A	2.164e^-4	0.659	UTR_3_PRIME CG12523 DOWNSTREAM CG12523
3R	856881	3R_856881_SNP [dm3] 3R_5031159_SNP [dm6]	G	T	2.175e^-4	0.661	INTERGENIC
3L	1570771	3L_1570771_SNP [dm3] 3L_1570771_SNP [dm6]	A	C	2.180e^-4	0.662	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	5688239	2L_5688239_SNP [dm3] 2L_5688239_SNP [dm6]	C	T	2.188e^-4	0.663	INTERGENIC
2R	10889142	2R_10889142_SNP [dm3] 2R_15001637_SNP [dm6]	T	A	2.191e^-4	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	575891	3R_575891_SNP [dm3] 3R_4750169_SNP [dm6]	C	T	2.207e^-4	0.665	DOWNSTREAM CG44098 INTRON atms	transposable element FlyBase
2R	8115428	2R_8115428_SNP [dm3] 2R_12227923_SNP [dm6]	A	T	2.208e^-4	0.665	INTRON CG8854
2L	5980840	2L_5980840_SNP [dm3] 2L_5980840_SNP [dm6]	A	T	2.210e^-4	0.665	UPSTREAM chic & 1 other INTRON chic	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10160178	2R_10160178_SNP [dm3] 2R_14272673_SNP [dm6]	C	T	2.213e^-4	0.665	SYNONYMOUS_CODING conv
3L	16083291	3L_16083291_SNP [dm3] 3L_16090191_SNP [dm6]	T	A	2.229e^-4	0.667	NON_SYNONYMOUS_CODING CG5235 UPSTREAM ClC-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	8095372	2R_8095372_INS [dm3] 2R_12207867_INS [dm6]	T	TT	2.231e^-4	0.667	DOWNSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8125691	2R_8125691_SNP [dm3] 2R_12238186_SNP [dm6]	T	G	2.233e^-4	0.667	INTERGENIC
3L	7043196	3L_7043196_SNP [dm3] 3L_7050096_SNP [dm6]	A	C	2.234e^-4	0.667	INTRON Mp
2R	8100000	2R_8100000_SNP [dm3] 2R_12212495_SNP [dm6]	G	A	2.241e^-4	0.667	UPSTREAM Sr-CII INTERGENIC
3R	26626521	3R_26626521_SNP [dm3] 3R_30800799_SNP [dm6]	A	G	2.244e^-4	0.667	UTR_5_PRIME wts
3R	2328042	3R_2328042_SNP [dm3] 3R_6502320_SNP [dm6]	C	T	2.247e^-4	0.667	INTERGENIC
2R	8122693	2R_8122693_SNP [dm3] 2R_12235188_SNP [dm6]	G	A	2.252e^-4	0.667	UPSTREAM CR44313 INTERGENIC
3R	2492504	3R_2492504_SNP [dm3] 3R_6666782_SNP [dm6]	T	C	2.259e^-4	0.667	INTRON lab	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	8087300	2R_8087300_SNP [dm3] 2R_12199795_SNP [dm6]	G	T	2.260e^-4	0.667	UPSTREAM CG8858 & 2 others INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	17364832	3R_17364832_SNP [dm3] 3R_21539110_SNP [dm6]	G	A	2.260e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	8954375	3R_8954375_SNP [dm3] 3R_13128653_SNP [dm6]	C	A	2.262e^-4	0.667	INTRON timeout & 1 other
X	3879236	X_3879236_SNP [dm3] X_3985203_SNP [dm6]	T	A	2.286e^-4	0.669	INTERGENIC
3L	18985031	3L_18985031_SNP [dm3] 3L_18991931_SNP [dm6]	T	G	2.286e^-4	0.669	SYNONYMOUS_CODING CG18135	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13361281	2R_13361281_SNP [dm3] 2R_17473776_SNP [dm6]	C	T	2.290e^-4	0.669	UTR_3_PRIME qkr54B DOWNSTREAM qkr54B
3R	22696232	3R_22696232_SNP [dm3] 3R_26870510_SNP [dm6]	A	T	2.294e^-4	0.669	SPLICE_SITE_REGION BM-40-SPARC UTR_5_PRIME BM-40-SPARC INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	8162763	2R_8162763_INS [dm3] 2R_12275258_INS [dm6]	A	AA	2.302e^-4	0.669	UTR_3_PRIME Cam DOWNSTREAM Cam
3R	26274563	3R_26274563_SNP [dm3] 3R_30448841_SNP [dm6]	A	G	2.307e^-4	0.669	INTRON aralar1	TF binding site mE1_TFBS_chinmo
3R	859720	3R_859720_DEL [dm3] 3R_5033998_DEL [dm6]	AA	A	2.308e^-4	0.669	INTERGENIC
3R	26276386	3R_26276386_SNP [dm3] 3R_30450664_SNP [dm6]	T	A	2.309e^-4	0.669	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16802634	3L_16802634_SNP [dm3] 3L_16809534_SNP [dm6]	A	G	2.318e^-4	0.669	DOWNSTREAM CG13024 INTRON nudC
2L	6575471	2L_6575471_SNP [dm3] 2L_6575471_SNP [dm6]	C	T	2.319e^-4	0.669	INTRON CG11319	TF binding site mE1_TFBS_cad
2R	8129085	2R_8129085_SNP [dm3] 2R_12241580_SNP [dm6]	C	A	2.322e^-4	0.669	UPSTREAM CG43316 DOWNSTREAM CG13170 INTRON CG43315
2R	10160334	2R_10160334_SNP [dm3] 2R_14272829_SNP [dm6]	C	T	2.324e^-4	0.669	SYNONYMOUS_CODING conv
2R	8086475	2R_8086475_INS [dm3] 2R_12198970_INS [dm6]	A	ATTC	2.332e^-4	0.669	UPSTREAM CG8858 DOWNSTREAM RpS11 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22211701	3R_22211701_SNP [dm3] 3R_26385979_SNP [dm6]	G	A	2.332e^-4	0.669	INTERGENIC
2L	5624142	2L_5624142_SNP [dm3] 2L_5624142_SNP [dm6]	T	C	2.334e^-4	0.669	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6022451	3L_6022451_SNP [dm3] 3L_6029351_SNP [dm6]	A	G	2.335e^-4	0.669	INTERGENIC
2L	8154088	2L_8154088_SNP [dm3] 2L_8154088_SNP [dm6]	A	G	2.339e^-4	0.669	INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8154109	2L_8154109_SNP [dm3] 2L_8154109_SNP [dm6]	C	A	2.339e^-4	0.669	INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14215480	3R_14215480_SNP [dm3] 3R_18389758_SNP [dm6]	C	G	2.340e^-4	0.669	UTR_5_PRIME Vha100-4 DOWNSTREAM Vha100-2	TF binding site mE1_TFBS_cad
2R	10890491	2R_10890491_SNP [dm3] 2R_15002986_SNP [dm6]	A	T	2.347e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	1932902	2L_1932902_DEL [dm3] 2L_1932902_DEL [dm6]	GC	T	2.348e^-4	0.669	INTRON CG7337
X	2224434	X_2224434_SNP [dm3] X_2330401_SNP [dm6]	T	C	2.362e^-4	0.669	INTRON phl & 1 other
3L	4393043	3L_4393043_SNP [dm3] 3L_4393043_SNP [dm6]	T	G	2.363e^-4	0.669	INTRON slow
2L	915540	2L_915540_SNP [dm3] 2L_915540_SNP [dm6]	G	A	2.367e^-4	0.669	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3668305	2L_3668305_SNP [dm3] 2L_3668305_SNP [dm6]	T	A	2.369e^-4	0.669	SYNONYMOUS_CODING Sfp24Ba DOWNSTREAM CG42463 & 1 other INTRON CG34340
2L	1480027	2L_1480027_SNP [dm3] 2L_1480027_SNP [dm6]	T	A	2.370e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	2.372e^-4	0.669	INTERGENIC
X	16637799	X_16637799_SNP [dm3] X_16743766_SNP [dm6]	C	A	2.375e^-4	0.669	SYNONYMOUS_CODING Twdlalpha DOWNSTREAM CG32568 INTRON CG9634	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15854328	2L_15854328_SNP [dm3] 2L_15854328_SNP [dm6]	G	C	2.385e^-4	0.669	UTR_5_PRIME Tektin-A DOWNSTREAM CG13243
3R	13765279	3R_13765279_SNP [dm3] 3R_17939557_SNP [dm6]	A	T	2.388e^-4	0.669	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18124680	X_18124680_SNP [dm3] X_18230647_SNP [dm6]	A	T	2.390e^-4	0.669	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	19902009	X_19902009_DEL [dm3] X_20007976_DEL [dm6]	AA	A	2.392e^-4	0.669	INTRON Dop2R
3L	22087490	3L_22087490_SNP [dm3] 3L_22094390_SNP [dm6]	T	C	2.402e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7244729	3R_7244729_DEL [dm3] 3R_11419007_DEL [dm6]	AA	A	2.406e^-4	0.669	UTR_5_PRIME CG45676 UPSTREAM CG6723 DOWNSTREAM ninaG	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13353860	2R_13353860_SNP [dm3] 2R_17466355_SNP [dm6]	G	T	2.406e^-4	0.669	UTR_3_PRIME Tes DOWNSTREAM CG14478	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8109912	2R_8109912_SNP [dm3] 2R_12222407_SNP [dm6]	C	A	2.409e^-4	0.669	INTERGENIC
3R	16899366	3R_16899366_SNP [dm3] 3R_21073644_SNP [dm6]	A	G	2.409e^-4	0.669	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18072818	2R_18072818_SNP [dm3] 2R_22185313_SNP [dm6]	C	T	2.409e^-4	0.669	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	8096148	2R_8096148_SNP [dm3] 2R_12208643_SNP [dm6]	C	T	2.412e^-4	0.669	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26175570	3R_26175570_SNP [dm3] 3R_30349848_SNP [dm6]	C	T	2.414e^-4	0.669	INTRON hdc
3L	10376542	3L_10376542_INS [dm3] 3L_10383442_INS [dm6]	A	GT	2.420e^-4	0.669	INTERGENIC
2L	750573	2L_750573_SNP [dm3] 2L_750573_SNP [dm6]	T	C	2.422e^-4	0.669	UPSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	2627704	3R_2627704_SNP [dm3] 3R_6801982_SNP [dm6]	T	G	2.429e^-4	0.669	UTR_3_PRIME Dfd	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	14433781	2L_14433781_DEL [dm3] 2L_14433781_DEL [dm6]	ACACTTTGAGAATA...	A	2.430e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	16727010	3L_16727010_SNP [dm3] 3L_16733910_SNP [dm6]	G	A	2.432e^-4	0.669	INTRON CG9701
2R	8125668	2R_8125668_SNP [dm3] 2R_12238163_SNP [dm6]	A	T	2.434e^-4	0.669	INTERGENIC
3L	7468654	3L_7468654_SNP [dm3] 3L_7475554_SNP [dm6]	G	T	2.438e^-4	0.669	UPSTREAM CG43292 INTERGENIC
3R	21997458	3R_21997458_SNP [dm3] 3R_26171736_SNP [dm6]	C	A	2.443e^-4	0.669	INTRON CG31323
3R	25385066	3R_25385066_SNP [dm3] 3R_29559344_SNP [dm6]	A	G	2.454e^-4	0.669	INTRON Dr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11430845	2L_11430845_SNP [dm3] 2L_11430845_SNP [dm6]	T	A	2.456e^-4	0.669	INTERGENIC
3R	3143319	3R_3143319_DEL [dm3] 3R_7317597_DEL [dm6]	AAT	C	2.461e^-4	0.669	UPSTREAM CG10029 INTERGENIC	transposable element FlyBase
2L	7386273	2L_7386273_SNP [dm3] 2L_7386273_SNP [dm6]	T	G	2.462e^-4	0.669	INTRON CG5149	TF binding site BDTNP1_TFBS_twi
3R	2418012	3R_2418012_SNP [dm3] 3R_6592290_SNP [dm6]	T	A	2.462e^-4	0.669	INTRON dpr11
2L	16205116	2L_16205116_SNP [dm3] 2L_16205116_SNP [dm6]	A	G	2.462e^-4	0.669	INTERGENIC
X	20141125	X_20141125_SNP [dm3] X_20270099_SNP [dm6]	C	T	2.474e^-4	0.669	UPSTREAM Inx6 INTERGENIC
2R	8170850	2R_8170850_SNP [dm3] 2R_12283345_SNP [dm6]	T	C	2.476e^-4	0.669	INTRON CG42700
2R	19746773	2R_19746773_DEL [dm3] 2R_23859250_DEL [dm6]	TT	T	2.483e^-4	0.669	UTR_3_PRIME TBPH UPSTREAM bgcn DOWNSTREAM TBPH
2R	10891143	2R_10891143_SNP [dm3] 2R_15003638_SNP [dm6]	C	T	2.486e^-4	0.669	INTERGENIC
3R	3054576	3R_3054576_SNP [dm3] 3R_7228854_SNP [dm6]	C	A	2.490e^-4	0.669	INTRON CG14608
3R	17364859	3R_17364859_SNP [dm3] 3R_21539137_SNP [dm6]	G	A	2.495e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	10293901	3L_10293901_SNP [dm3] 3L_10300801_SNP [dm6]	T	A	2.500e^-4	0.669	INTERGENIC
3R	21477243	3R_21477243_SNP [dm3] 3R_25651521_SNP [dm6]	T	A	2.502e^-4	0.669	DOWNSTREAM mir-92b INTERGENIC	TF binding site mE1_TFBS_cad
2L	21781847	2L_21781847_SNP [dm3] 2L_21781847_SNP [dm6]	A	G	2.503e^-4	0.669	DOWNSTREAM CG11630 INTRON CG31612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4996625	2L_4996625_SNP [dm3] 2L_4996625_SNP [dm6]	C	T	2.507e^-4	0.669	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	761154	2L_761154_SNP [dm3] 2L_761154_SNP [dm6]	C	T	2.510e^-4	0.669	UTR_3_PRIME GABA-B-R3
3R	2419407	3R_2419407_SNP [dm3] 3R_6593685_SNP [dm6]	T	C	2.510e^-4	0.669	UPSTREAM dpr11 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17253813	2R_17253813_DEL [dm3] 2R_21366308_DEL [dm6]	CGGATCGGTATC...	C	2.511e^-4	0.669	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8122493	2R_8122493_INS [dm3] 2R_12234988_INS [dm6]	A	ATTAGTTA	2.513e^-4	0.669	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_kn
3R	20877075	3R_20877075_SNP [dm3] 3R_25051353_SNP [dm6]	C	T	2.514e^-4	0.669	NON_SYNONYMOUS_CODING CG11791	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10359510	X_10359510_SNP [dm3] X_10465477_SNP [dm6]	A	G	2.517e^-4	0.669	INTRON nocte
3R	21967158	3R_21967158_SNP [dm3] 3R_26141436_SNP [dm6]	G	A	2.523e^-4	0.669	INTERGENIC
2R	8078325	2R_8078325_SNP [dm3] 2R_12190820_SNP [dm6]	G	T	2.526e^-4	0.669	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3R	15344980	3R_15344980_SNP [dm3] 3R_19519258_SNP [dm6]	C	A	2.534e^-4	0.671	INTRON Dys
2R	8087580	2R_8087580_SNP [dm3] 2R_12200075_SNP [dm6]	A	G	2.548e^-4	0.672	UPSTREAM snoRNA:Me28S-C3420b & 1 other INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	10343984	3L_10343984_DEL [dm3] 3L_10350884_DEL [dm6]	ATAC	A	2.554e^-4	0.672	INTRON CR44327
2R	10170555	2R_10170555_SNP [dm3] 2R_14283050_SNP [dm6]	C	G	2.558e^-4	0.672	INTRON Ih
3L	869264	3L_869264_SNP [dm3] 3L_869264_SNP [dm6]	T	G	2.558e^-4	0.672	NON_SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8086269	2R_8086269_SNP [dm3] 2R_12198764_SNP [dm6]	A	C	2.566e^-4	0.672	DOWNSTREAM RpS11 & 2 others INTRON CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2R	8163934	2R_8163934_SNP [dm3] 2R_12276429_SNP [dm6]	T	C	2.567e^-4	0.672	UTR_3_PRIME Cam
2L	11504553	2L_11504553_SNP [dm3] 2L_11504553_SNP [dm6]	C	A	2.568e^-4	0.672	INTRON spz4
2R	8123170	2R_8123170_SNP [dm3] 2R_12235665_SNP [dm6]	G	A	2.573e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	2.574e^-4	0.672	INTERGENIC
2R	8087309	2R_8087309_SNP [dm3] 2R_12199804_SNP [dm6]	T	C	2.580e^-4	0.673	UPSTREAM CG8858 & 2 others INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	1410039	2R_1410039_SNP [dm3] 2R_5522534_SNP [dm6]	C	T	2.583e^-4	0.673	INTRON CG30438	transposable element FlyBase
2R	8178402	2R_8178402_INS [dm3] 2R_12290897_INS [dm6]	A	AA	2.596e^-4	0.673	INTRON CG42700
3R	26276475	3R_26276475_SNP [dm3] 3R_30450753_SNP [dm6]	T	G	2.598e^-4	0.673	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8090853	2R_8090853_SNP [dm3] 2R_12203348_SNP [dm6]	A	C	2.598e^-4	0.673	INTERGENIC
2R	8123318	2R_8123318_SNP [dm3] 2R_12235813_SNP [dm6]	T	A	2.599e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8124836	2R_8124836_SNP [dm3] 2R_12237331_SNP [dm6]	T	A	2.609e^-4	0.674	INTERGENIC
3R	26596006	3R_26596006_SNP [dm3] 3R_30770284_SNP [dm6]	G	A	2.616e^-4	0.674	INTRON zfh1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8169396	2R_8169396_SNP [dm3] 2R_12281891_SNP [dm6]	T	C	2.617e^-4	0.674	INTRON CG42700
2R	8122383	2R_8122383_SNP [dm3] 2R_12234878_SNP [dm6]	G	T	2.618e^-4	0.674	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	19630169	3L_19630169_SNP [dm3] 3L_19637069_SNP [dm6]	T	A	2.622e^-4	0.674	DOWNSTREAM CG8786 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	10721974	3R_10721974_SNP [dm3] 3R_14896252_SNP [dm6]	G	C	2.627e^-4	0.674	SYNONYMOUS_CODING Nup93-2 UTR_3_PRIME CG14860	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8112615	2R_8112615_SNP [dm3] 2R_12225110_SNP [dm6]	T	C	2.631e^-4	0.674	NON_SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8112137	2R_8112137_SNP [dm3] 2R_12224632_SNP [dm6]	G	T	2.632e^-4	0.674	UTR_3_PRIME CG8854
3L	1396667	3L_1396667_SNP [dm3] 3L_1396667_SNP [dm6]	C	T	2.633e^-4	0.674	INTRON Ptp61F	TF binding site mE1_TFBS_HSA
2R	8566651	2R_8566651_SNP [dm3] 2R_12679146_SNP [dm6]	C	G	2.639e^-4	0.674	DOWNSTREAM CG8771 INTRON CG42708	TF binding site mE1_TFBS_Trl
3L	1933890	3L_1933890_SNP [dm3] 3L_1933890_SNP [dm6]	G	A	2.648e^-4	0.676	UTR_3_PRIME CG5687 DOWNSTREAM Dbx	TF binding site mE1_TFBS_cad
2R	8125451	2R_8125451_SNP [dm3] 2R_12237946_SNP [dm6]	T	C	2.651e^-4	0.676	INTERGENIC
2R	8131743	2R_8131743_SNP [dm3] 2R_12244238_SNP [dm6]	T	C	2.667e^-4	0.676	DOWNSTREAM CG43316 INTRON CG43244
2R	8166550	2R_8166550_SNP [dm3] 2R_12279045_SNP [dm6]	G	A	2.667e^-4	0.676	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	3007673	2R_3007673_SNP [dm3] 2R_7120168_SNP [dm6]	C	T	2.667e^-4	0.676	INTRON esn
3R	4968854	3R_4968854_SNP [dm3] 3R_9143132_SNP [dm6]	A	G	2.668e^-4	0.676	INTRON pum
3R	15346757	3R_15346757_DEL [dm3] 3R_19521035_DEL [dm6]	TGTTGCTTT	T	2.676e^-4	0.677	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15252484	2L_15252484_SNP [dm3] 2L_15252484_SNP [dm6]	A	G	2.679e^-4	0.677	SYNONYMOUS_CODING dao	TF binding site mE1_TFBS_cad
2R	8102893	2R_8102893_SNP [dm3] 2R_12215388_SNP [dm6]	A	G	2.688e^-4	0.677	DOWNSTREAM CG13171 INTERGENIC
2R	8143625	2R_8143625_SNP [dm3] 2R_12256120_SNP [dm6]	A	T	2.689e^-4	0.677	DOWNSTREAM CG13168 INTERGENIC
3R	5888048	3R_5888048_SNP [dm3] 3R_10062326_SNP [dm6]	G	A	2.691e^-4	0.677	UPSTREAM CG33630 & 1 other DOWNSTREAM CR33629 INTERGENIC
2R	8091164	2R_8091164_SNP [dm3] 2R_12203659_SNP [dm6]	G	A	2.700e^-4	0.677	INTERGENIC
3L	10695161	3L_10695161_SNP [dm3] 3L_10702061_SNP [dm6]	G	A	2.701e^-4	0.677	INTERGENIC
2R	10542465	2R_10542465_SNP [dm3] 2R_14654960_SNP [dm6]	A	T	2.705e^-4	0.677	INTERGENIC
3L	19102882	3L_19102882_SNP [dm3] 3L_19109782_SNP [dm6]	A	G	2.707e^-4	0.677	INTRON CG14082
X	6335564	X_6335564_SNP [dm3] X_6441531_SNP [dm6]	A	T	2.722e^-4	0.677	INTRON CG42340
X	3560066	X_3560066_SNP [dm3] X_3666033_SNP [dm6]	C	A	2.735e^-4	0.677	UTR_3_PRIME AstA-R1
2R	8167416	2R_8167416_SNP [dm3] 2R_12279911_SNP [dm6]	G	C	2.739e^-4	0.677	UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo
3R	559040	3R_559040_SNP [dm3] 3R_4733318_SNP [dm6]	C	T	2.740e^-4	0.677	DOWNSTREAM tacc INTERGENIC
3L	15730461	3L_15730461_SNP [dm3] 3L_15737361_SNP [dm6]	G	A	2.743e^-4	0.677	INTERGENIC
X	8008032	X_8008032_SNP [dm3] X_8113999_SNP [dm6]	A	C	2.745e^-4	0.677	INTRON Gclc	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	12967860	2R_12967860_SNP [dm3] 2R_17080355_SNP [dm6]	T	A	2.751e^-4	0.677	INTRON CG30460
2R	6259174	2R_6259174_SNP [dm3] 2R_10371669_SNP [dm6]	C	T	2.773e^-4	0.677	INTRON CG42732
2L	3666120	2L_3666120_SNP [dm3] 2L_3666120_SNP [dm6]	G	T	2.782e^-4	0.677	INTRON CG34340
2R	8128168	2R_8128168_SNP [dm3] 2R_12240663_SNP [dm6]	T	C	2.782e^-4	0.677	SYNONYMOUS_CODING CG13170 UPSTREAM CG43315
3R	651236	3R_651236_SNP [dm3] 3R_4825514_SNP [dm6]	C	A	2.792e^-4	0.677	INTERGENIC
2L	1530819	2L_1530819_INS [dm3] 2L_1530819_INS [dm6]	T	TT	2.798e^-4	0.677	INTERGENIC
3R	16029678	3R_16029678_SNP [dm3] 3R_20203956_SNP [dm6]	G	A	2.800e^-4	0.677	UPSTREAM Nlg4 INTERGENIC
2R	8091053	2R_8091053_SNP [dm3] 2R_12203548_SNP [dm6]	A	G	2.804e^-4	0.677	INTERGENIC
2L	9443766	2L_9443766_SNP [dm3] 2L_9443766_SNP [dm6]	T	C	2.812e^-4	0.677	INTRON numb
2R	17984322	2R_17984322_SNP [dm3] 2R_22096817_SNP [dm6]	G	T	2.812e^-4	0.677	INTRON CG11073
2R	13354995	2R_13354995_SNP [dm3] 2R_17467490_SNP [dm6]	G	A	2.814e^-4	0.677	SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18621703	3R_18621703_SNP [dm3] 3R_22795981_SNP [dm6]	T	A	2.815e^-4	0.677	INTERGENIC
3R	2275900	3R_2275900_SNP [dm3] 3R_6450178_SNP [dm6]	T	G	2.818e^-4	0.677	UTR_3_PRIME CG9727 DOWNSTREAM gpp
3L	4495251	3L_4495251_SNP [dm3] 3L_4495251_SNP [dm6]	G	C	2.828e^-4	0.677	UPSTREAM CR44709 INTERGENIC
3L	4496182	3L_4496182_DEL [dm3] 3L_4496182_DEL [dm6]	TG	T	2.828e^-4	0.677	DOWNSTREAM CG13721 INTERGENIC
2R	10627631	2R_10627631_SNP [dm3] 2R_14740126_SNP [dm6]	T	G	2.834e^-4	0.677	UTR_3_PRIME CG12858 UPSTREAM CR43428 DOWNSTREAM CG12858
2R	6240196	2R_6240196_SNP [dm3] 2R_10352691_SNP [dm6]	G	T	2.841e^-4	0.677	UTR_5_PRIME CG43178 UTR_3_PRIME CG43171 & 1 other UPSTREAM CG43172 & 2 others INTRON CG42732
3R	585492	3R_585492_DEL [dm3] 3R_4759770_DEL [dm6]	TAGTAAAG	C	2.848e^-4	0.677	INTRON atms & 1 other
2R	8156294	2R_8156294_SNP [dm3] 2R_12268789_SNP [dm6]	G	A	2.849e^-4	0.677	INTRON Cam
2L	5655642	2L_5655642_SNP [dm3] 2L_5655642_SNP [dm6]	G	A	2.851e^-4	0.677	INTRON CG31646	TF binding site mE1_TFBS_inv
2R	8110983	2R_8110983_DEL [dm3] 2R_12223478_DEL [dm6]	CT	A	2.856e^-4	0.677	DOWNSTREAM CG8854 INTERGENIC
2R	8088154	2R_8088154_SNP [dm3] 2R_12200649_SNP [dm6]	T	C	2.861e^-4	0.677	UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	13868883	3R_13868883_SNP [dm3] 3R_18043161_SNP [dm6]	C	A	2.864e^-4	0.677	INTERGENIC
2R	8157386	2R_8157386_SNP [dm3] 2R_12269881_SNP [dm6]	C	A	2.870e^-4	0.677	INTRON Cam
2R	8120064	2R_8120064_SNP [dm3] 2R_12232559_SNP [dm6]	T	C	2.870e^-4	0.677	INTERGENIC
2R	8126311	2R_8126311_SNP [dm3] 2R_12238806_SNP [dm6]	A	C	2.872e^-4	0.677	INTERGENIC
2R	8112207	2R_8112207_SNP [dm3] 2R_12224702_SNP [dm6]	G	A	2.872e^-4	0.677	UTR_3_PRIME CG8854	TF binding site mE1_TFBS_chinmo
3R	23443146	3R_23443146_SNP [dm3] 3R_27617424_SNP [dm6]	T	C	2.881e^-4	0.677	INTRON Tusp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12819925	2R_12819925_SNP [dm3] 2R_16932420_SNP [dm6]	A	G	2.882e^-4	0.677	INTRON Pkc53E
2R	8084504	2R_8084504_SNP [dm3] 2R_12196999_SNP [dm6]	T	C	2.886e^-4	0.677	INTRON CG8858	TF binding site mE1_TFBS_cad
3R	16899416	3R_16899416_SNP [dm3] 3R_21073694_SNP [dm6]	C	A	2.891e^-4	0.677	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8103038	2R_8103038_SNP [dm3] 2R_12215533_SNP [dm6]	C	T	2.896e^-4	0.677	INTERGENIC
2L	4117684	2L_4117684_SNP [dm3] 2L_4117684_SNP [dm6]	G	A	2.898e^-4	0.677	INTERGENIC
2L	3881929	2L_3881929_SNP [dm3] 2L_3881929_SNP [dm6]	A	G	2.899e^-4	0.677	INTRON capu
2R	8088146	2R_8088146_SNP [dm3] 2R_12200641_SNP [dm6]	T	G	2.902e^-4	0.677	UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	13495553	2R_13495553_SNP [dm3] 2R_17608048_SNP [dm6]	C	G	2.903e^-4	0.677	SYNONYMOUS_CODING CG10936
2R	8135527	2R_8135527_SNP [dm3] 2R_12248022_SNP [dm6]	G	A	2.909e^-4	0.677	INTERGENIC
3L	661661	3L_661661_SNP [dm3] 3L_661661_SNP [dm6]	C	G	2.916e^-4	0.677	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5830969	X_5830969_SNP [dm3] X_5936936_SNP [dm6]	T	G	2.920e^-4	0.677	INTRON CG3726
3L	1125180	3L_1125180_DEL [dm3] 3L_1125180_DEL [dm6]	AT	G	2.925e^-4	0.677	INTERGENIC	regulatory region REDfly_CRMs
X	12046662	X_12046662_SNP [dm3] X_12152629_SNP [dm6]	A	T	2.930e^-4	0.677	INTRON Ten-a
3R	21572565	3R_21572565_SNP [dm3] 3R_25746843_SNP [dm6]	A	T	2.948e^-4	0.677	INTRON LpR1
2L	2598535	2L_2598535_SNP [dm3] 2L_2598535_SNP [dm6]	T	A	2.948e^-4	0.677	DOWNSTREAM CR44790 INTERGENIC
2R	8136749	2R_8136749_SNP [dm3] 2R_12249244_SNP [dm6]	T	A	2.956e^-4	0.677	INTERGENIC
X	6721464	X_6721464_SNP [dm3] X_6827431_SNP [dm6]	C	T	2.962e^-4	0.677	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo
3L	4495248	3L_4495248_SNP [dm3] 3L_4495248_SNP [dm6]	A	C	2.963e^-4	0.677	UPSTREAM CR44709 INTERGENIC
X	12046613	X_12046613_SNP [dm3] X_12152580_SNP [dm6]	T	A	2.967e^-4	0.677	INTRON Ten-a
3L	19630147	3L_19630147_DEL [dm3] 3L_19637047_DEL [dm6]	TT	T	2.970e^-4	0.677	DOWNSTREAM CG8786 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	17364809	3R_17364809_SNP [dm3] 3R_21539087_SNP [dm6]	G	A	2.982e^-4	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	968283	3L_968283_SNP [dm3] 3L_968283_SNP [dm6]	A	G	2.983e^-4	0.677	INTRON Glut1
X	6882284	X_6882284_SNP [dm3] X_6988251_SNP [dm6]	C	G	2.986e^-4	0.677	INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	901374	2L_901374_SNP [dm3] 2L_901374_SNP [dm6]	A	T	2.991e^-4	0.677	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14491724	3L_14491724_SNP [dm3] 3L_14498624_SNP [dm6]	T	C	2.993e^-4	0.677	INTRON bbg	TF binding site mE1_TFBS_inv
X	19680975	X_19680975_SNP [dm3] X_19786942_SNP [dm6]	A	G	2.999e^-4	0.677	EXON CR44885	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5920890	3L_5920890_DEL [dm3] 3L_5927790_DEL [dm6]	AGAGCCCAAAAGTCCGGCTT...	A	3.002e^-4	0.677	UTR_5_PRIME Vap-33B UPSTREAM Vap-33B INTRON Vap-33B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4793827	X_4793827_DEL [dm3] X_4899794_DEL [dm6]	CATATAAGCTTAAAACTTGC...	C	3.003e^-4	0.677	INTRON CG42594
X	4793883	X_4793883_SNP [dm3] X_4899850_SNP [dm6]	C	A	3.003e^-4	0.677	INTRON CG42594
2R	10170857	2R_10170857_SNP [dm3] 2R_14283352_SNP [dm6]	G	T	3.007e^-4	0.677	INTRON Ih
2L	3370385	2L_3370385_DEL [dm3] 2L_3370385_DEL [dm6]	TTTTTATTTTTAGC...	T	3.008e^-4	0.677	INTRON CG34394
X	19301615	X_19301615_SNP [dm3] X_19407582_SNP [dm6]	A	C	3.012e^-4	0.677	INTRON kek5
X	6882290	X_6882290_SNP [dm3] X_6988257_SNP [dm6]	T	C	3.013e^-4	0.677	INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7240669	3R_7240669_SNP [dm3] 3R_11414947_SNP [dm6]	C	T	3.017e^-4	0.677	SYNONYMOUS_CODING Ranbp9	TF binding site mE1_TFBS_cad
3R	25376561	3R_25376561_SNP [dm3] 3R_29550839_SNP [dm6]	T	C	3.018e^-4	0.677	INTERGENIC
3R	18683069	3R_18683069_SNP [dm3] 3R_22857347_SNP [dm6]	T	A	3.019e^-4	0.677	INTERGENIC
3R	13934608	3R_13934608_INS [dm3] 3R_18108886_INS [dm6]	G	GCGGGG	3.024e^-4	0.677	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
2L	2269160	2L_2269160_SNP [dm3] 2L_2269160_SNP [dm6]	T	C	3.024e^-4	0.677	UPSTREAM CG17242 INTERGENIC
3R	5077062	3R_5077062_SNP [dm3] 3R_9251340_SNP [dm6]	A	G	3.026e^-4	0.677	UTR_3_PRIME CG8420 UPSTREAM St2
2R	8090560	2R_8090560_SNP [dm3] 2R_12203055_SNP [dm6]	A	T	3.026e^-4	0.677	INTERGENIC
2R	6230793	2R_6230793_SNP [dm3] 2R_10343288_SNP [dm6]	C	T	3.031e^-4	0.677	INTRON CG42732
2R	6230318	2R_6230318_SNP [dm3] 2R_10342813_SNP [dm6]	T	G	3.035e^-4	0.677	INTRON CG42732
2R	6233997	2R_6233997_SNP [dm3] 2R_10346492_SNP [dm6]	T	A	3.035e^-4	0.677	INTRON CG42732
3L	10695066	3L_10695066_SNP [dm3] 3L_10701966_SNP [dm6]	A	T	3.038e^-4	0.677	INTERGENIC
3R	8440015	3R_8440015_SNP [dm3] 3R_12614293_SNP [dm6]	G	C	3.041e^-4	0.677	INTERGENIC
2R	7058670	2R_7058670_SNP [dm3] 2R_11171165_SNP [dm6]	C	T	3.042e^-4	0.677	INTRON shn & 1 other
3R	26175569	3R_26175569_SNP [dm3] 3R_30349847_SNP [dm6]	T	C	3.047e^-4	0.677	INTRON hdc
3R	16899430	3R_16899430_SNP [dm3] 3R_21073708_SNP [dm6]	A	T	3.053e^-4	0.677	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8122442	2R_8122442_SNP [dm3] 2R_12234937_SNP [dm6]	A	G	3.055e^-4	0.677	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8104836	2R_8104836_SNP [dm3] 2R_12217331_SNP [dm6]	T	G	3.058e^-4	0.677	INTERGENIC	TF binding site mE1_TFBS_inv
3L	17244278	3L_17244278_SNP [dm3] 3L_17251178_SNP [dm6]	A	T	3.062e^-4	0.677	INTRON CR43870
X	12046650	X_12046650_SNP [dm3] X_12152617_SNP [dm6]	A	G	3.067e^-4	0.677	INTRON Ten-a
2R	8093258	2R_8093258_SNP [dm3] 2R_12205753_SNP [dm6]	A	T	3.070e^-4	0.677	UPSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13781149	3R_13781149_SNP [dm3] 3R_17955427_SNP [dm6]	A	C	3.075e^-4	0.677	INTRON cpo
2R	14608659	2R_14608659_SNP [dm3] 2R_18721154_SNP [dm6]	G	A	3.080e^-4	0.677	DOWNSTREAM mir-4982 INTRON Hs3st-A
2R	8112670	2R_8112670_SNP [dm3] 2R_12225165_SNP [dm6]	C	T	3.081e^-4	0.677	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
2R	2599820	2R_2599820_SNP [dm3] 2R_6712315_SNP [dm6]	C	G	3.088e^-4	0.677	UPSTREAM CG3409 & 1 other INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	2649638	2R_2649638_SNP [dm3] 2R_6762133_SNP [dm6]	A	T	3.092e^-4	0.677	UTR_3_PRIME Epac	TF binding site mE1_TFBS_cad
3L	7903548	3L_7903548_SNP [dm3] 3L_7910448_SNP [dm6]	T	C	3.094e^-4	0.677	INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8113309	2R_8113309_SNP [dm3] 2R_12225804_SNP [dm6]	C	T	3.098e^-4	0.677	NON_SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
3L	7400358	3L_7400358_SNP [dm3] 3L_7407258_SNP [dm6]	T	G	3.100e^-4	0.677	DOWNSTREAM pncr015:3L INTERGENIC
3R	9333654	3R_9333654_SNP [dm3] 3R_13507932_SNP [dm6]	C	A	3.110e^-4	0.677	INTERGENIC
2L	6594069	2L_6594069_SNP [dm3] 2L_6594069_SNP [dm6]	G	A	3.112e^-4	0.677	INTRON CG11319
3L	1368383	3L_1368383_SNP [dm3] 3L_1368383_SNP [dm6]	G	A	3.116e^-4	0.677	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3670705	2L_3670705_SNP [dm3] 2L_3670705_SNP [dm6]	T	A	3.118e^-4	0.677	UPSTREAM Sfp24Bb & 1 other INTRON CG34340
X	2245867	X_2245867_SNP [dm3] X_2351834_SNP [dm6]	A	C	3.120e^-4	0.677	INTRON ptr
X	6882250	X_6882250_SNP [dm3] X_6988217_SNP [dm6]	C	T	3.121e^-4	0.677	INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6117773	2L_6117773_SNP [dm3] 2L_6117773_SNP [dm6]	A	G	3.123e^-4	0.677	UPSTREAM CG31642 INTRON stai
2L	1480110	2L_1480110_SNP [dm3] 2L_1480110_SNP [dm6]	C	T	3.126e^-4	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8153662	2R_8153662_SNP [dm3] 2R_12266157_SNP [dm6]	G	A	3.127e^-4	0.677	INTRON Cam
2L	6589321	2L_6589321_SNP [dm3] 2L_6589321_SNP [dm6]	C	A	3.134e^-4	0.677	INTRON CG11319
3R	5853531	3R_5853531_SNP [dm3] 3R_10027809_SNP [dm6]	G	C	3.134e^-4	0.677	INTRON Mical
2L	839340	2L_839340_SNP [dm3] 2L_839340_SNP [dm6]	G	C	3.135e^-4	0.677	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	761391	2L_761391_SNP [dm3] 2L_761391_SNP [dm6]	C	T	3.136e^-4	0.677	UTR_3_PRIME GABA-B-R3
3R	2626031	3R_2626031_SNP [dm3] 3R_6800309_SNP [dm6]	G	A	3.139e^-4	0.677	INTRON Dfd	regulatory region FlyBase REDfly_CRMs
2R	8093885	2R_8093885_SNP [dm3] 2R_12206380_SNP [dm6]	T	G	3.143e^-4	0.677	EXON CR45276	TF binding site mE1_TFBS_cad
3L	6022346	3L_6022346_SNP [dm3] 3L_6029246_SNP [dm6]	T	A	3.143e^-4	0.677	INTERGENIC
2R	19189163	2R_19189163_SNP [dm3] 2R_23301640_SNP [dm6]	T	C	3.146e^-4	0.677	INTERGENIC
3R	17339813	3R_17339813_SNP [dm3] 3R_21514091_SNP [dm6]	C	T	3.154e^-4	0.677	INTERGENIC
2L	7400313	2L_7400313_DEL [dm3] 2L_7400313_DEL [dm6]	TT	T	3.156e^-4	0.677	DOWNSTREAM CR44079 INTERGENIC
3R	10720397	3R_10720397_SNP [dm3] 3R_14894675_SNP [dm6]	A	C	3.158e^-4	0.677	UPSTREAM CG14860 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	8090678	2R_8090678_SNP [dm3] 2R_12203173_SNP [dm6]	C	T	3.162e^-4	0.677	INTERGENIC
2R	6227942	2R_6227942_SNP [dm3] 2R_10340437_SNP [dm6]	C	A	3.163e^-4	0.677	INTRON CG42732
2R	6227946	2R_6227946_SNP [dm3] 2R_10340441_SNP [dm6]	T	A	3.163e^-4	0.677	INTRON CG42732
2R	5486841	2R_5486841_SNP [dm3] 2R_9599336_SNP [dm6]	C	T	3.166e^-4	0.677	SYNONYMOUS_CODING CG30338 DOWNSTREAM CG30340 INTRON CG1902 & 1 other
3L	9748810	3L_9748810_SNP [dm3] 3L_9755710_SNP [dm6]	G	T	3.170e^-4	0.677	INTRON CG42268
X	22391974	X_22391974_SNP [dm3] X_22990138_SNP [dm6]	A	T	3.172e^-4	0.677	INTRON stnA & 1 other
3L	7256324	3L_7256324_SNP [dm3] 3L_7263224_SNP [dm6]	C	T	3.179e^-4	0.677	INTRON CG14830
3R	2531949	3R_2531949_SNP [dm3] 3R_6706227_SNP [dm6]	A	T	3.182e^-4	0.677	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14016913	3L_14016913_SNP [dm3] 3L_14023813_SNP [dm6]	A	G	3.183e^-4	0.677	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8727891	X_8727891_SNP [dm3] X_8833858_SNP [dm6]	A	C	3.184e^-4	0.677	INTERGENIC
3R	3137868	3R_3137868_SNP [dm3] 3R_7312146_SNP [dm6]	C	G	3.185e^-4	0.677	DOWNSTREAM CR44334 INTERGENIC
3R	5869561	3R_5869561_SNP [dm3] 3R_10043839_SNP [dm6]	T	G	3.188e^-4	0.677	SYNONYMOUS_CODING CG3909 UPSTREAM Mical DOWNSTREAM CG11722	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26218716	3R_26218716_SNP [dm3] 3R_30392994_SNP [dm6]	C	G	3.193e^-4	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	768079	2L_768079_SNP [dm3] 2L_768079_SNP [dm6]	T	C	3.194e^-4	0.677	INTERGENIC
2L	12398083	2L_12398083_SNP [dm3] 2L_12398083_SNP [dm6]	A	T	3.195e^-4	0.677	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
2R	8102924	2R_8102924_SNP [dm3] 2R_12215419_SNP [dm6]	C	G	3.197e^-4	0.677	INTERGENIC
2L	8661019	2L_8661019_SNP [dm3] 2L_8661019_SNP [dm6]	G	A	3.200e^-4	0.677	INTRON Sema-1a
3R	17240671	3R_17240671_SNP [dm3] 3R_21414949_SNP [dm6]	T	A	3.200e^-4	0.677	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	9845026	3L_9845026_DEL [dm3] 3L_9851926_DEL [dm6]	AGGCGAGGA	A	3.203e^-4	0.677	INTRON RasGAP1	TF binding site mE1_TFBS_cad
2R	2649636	2R_2649636_SNP [dm3] 2R_6762131_SNP [dm6]	A	G	3.208e^-4	0.677	UTR_3_PRIME Epac	TF binding site mE1_TFBS_cad
2R	8125560	2R_8125560_DEL [dm3] 2R_12238055_DEL [dm6]	AT	A	3.209e^-4	0.677	INTERGENIC
3R	14812195	3R_14812195_SNP [dm3] 3R_18986473_SNP [dm6]	A	C	3.212e^-4	0.677	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18072416	2R_18072416_SNP [dm3] 2R_22184911_SNP [dm6]	C	T	3.212e^-4	0.677	SYNONYMOUS_CODING MED16	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	3143024	3R_3143024_INS [dm3] 3R_7317302_INS [dm6]	A	ATACAA	3.220e^-4	0.677	UPSTREAM CG10029 INTERGENIC
2L	1480033	2L_1480033_SNP [dm3] 2L_1480033_SNP [dm6]	C	A	3.228e^-4	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8526106	3L_8526106_SNP [dm3] 3L_8533006_SNP [dm6]	C	T	3.230e^-4	0.677	SYNONYMOUS_CODING foi	TF binding site mE1_TFBS_cad
3L	8529220	3L_8529220_SNP [dm3] 3L_8536120_SNP [dm6]	G	A	3.230e^-4	0.677	INTRON ergic53	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5675079	2R_5675079_SNP [dm3] 2R_9787574_SNP [dm6]	C	T	3.233e^-4	0.677	UPSTREAM CR44208 INTRON CG1688
X	19680958	X_19680958_SNP [dm3] X_19786925_SNP [dm6]	T	C	3.236e^-4	0.677	EXON CR44885	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13934451	3R_13934451_SNP [dm3] 3R_18108729_SNP [dm6]	C	A	3.238e^-4	0.677	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
3R	10499457	3R_10499457_SNP [dm3] 3R_14673735_SNP [dm6]	A	G	3.242e^-4	0.677	INTRON Meltrin
X	7742392	X_7742392_SNP [dm3] X_7848359_SNP [dm6]	G	T	3.242e^-4	0.677	INTERGENIC
2L	2620098	2L_2620098_SNP [dm3] 2L_2620098_SNP [dm6]	G	C	3.243e^-4	0.677	UPSTREAM CG43403 INTERGENIC
3R	3155964	3R_3155964_SNP [dm3] 3R_7330242_SNP [dm6]	C	T	3.245e^-4	0.677	INTERGENIC
3R	21187038	3R_21187038_SNP [dm3] 3R_25361316_SNP [dm6]	C	T	3.249e^-4	0.677	INTRON Fur1
2R	10160112	2R_10160112_SNP [dm3] 2R_14272607_SNP [dm6]	G	A	3.250e^-4	0.677	SYNONYMOUS_CODING conv
3L	10682011	3L_10682011_SNP [dm3] 3L_10688911_SNP [dm6]	C	T	3.253e^-4	0.677	INTRON simj	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	19765861	3R_19765861_SNP [dm3] 3R_23940139_SNP [dm6]	G	C	3.253e^-4	0.677	INTRON Gdh
3R	2429329	3R_2429329_SNP [dm3] 3R_6603607_SNP [dm6]	A	T	3.258e^-4	0.677	INTERGENIC
3L	882969	3L_882969_SNP [dm3] 3L_882969_SNP [dm6]	A	C	3.271e^-4	0.678	UPSTREAM CG13907 INTRON CG32479	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	629464	3R_629464_INS [dm3] 3R_4803742_INS [dm6]	C	CT	3.275e^-4	0.678	UPSTREAM ctrip INTRON ctrip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3861052	2L_3861052_SNP [dm3] 2L_3861052_SNP [dm6]	C	T	3.280e^-4	0.678	DOWNSTREAM CR44078 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8173240	2R_8173240_SNP [dm3] 2R_12285735_SNP [dm6]	T	A	3.283e^-4	0.678	UPSTREAM CG42700 INTRON CG42700
2L	4111492	2L_4111492_DEL [dm3] 2L_4111492_DEL [dm6]	GG	G	3.288e^-4	0.678	INTRON ed
3R	15325535	3R_15325535_DEL [dm3] 3R_19499813_DEL [dm6]	GCGTG	G	3.292e^-4	0.678	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22764518	3R_22764518_SNP [dm3] 3R_26938796_SNP [dm6]	G	A	3.305e^-4	0.678	INTRON sda
X	2995364	X_2995364_SNP [dm3] X_3101331_SNP [dm6]	T	C	3.307e^-4	0.678	INTRON kirre
3R	24927611	3R_24927611_SNP [dm3] 3R_29101889_SNP [dm6]	C	A	3.307e^-4	0.678	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7400288	2L_7400288_SNP [dm3] 2L_7400288_SNP [dm6]	A	C	3.309e^-4	0.678	DOWNSTREAM CR44079 INTERGENIC
2R	3987713	2R_3987713_SNP [dm3] 2R_8100208_SNP [dm6]	C	A	3.310e^-4	0.678	SYNONYMOUS_CODING CG11210	TF binding site mE1_TFBS_sens
2R	10889296	2R_10889296_SNP [dm3] 2R_15001791_SNP [dm6]	G	T	3.312e^-4	0.678	INTERGENIC
2L	9354948	2L_9354948_SNP [dm3] 2L_9354948_SNP [dm6]	A	T	3.316e^-4	0.678	INTERGENIC
2R	8129536	2R_8129536_SNP [dm3] 2R_12242031_SNP [dm6]	G	T	3.325e^-4	0.678	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3L	16083338	3L_16083338_SNP [dm3] 3L_16090238_SNP [dm6]	G	T	3.330e^-4	0.678	NON_SYNONYMOUS_CODING CG5235 UPSTREAM ClC-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	10160367	2R_10160367_SNP [dm3] 2R_14272862_SNP [dm6]	C	T	3.334e^-4	0.678	SYNONYMOUS_CODING conv
3L	8196494	3L_8196494_SNP [dm3] 3L_8203394_SNP [dm6]	G	A	3.334e^-4	0.678	UPSTREAM CG7366 DOWNSTREAM CG13679 INTERGENIC
X	12814200	X_12814200_SNP [dm3] X_12920167_SNP [dm6]	G	A	3.342e^-4	0.678	INTRON fne
X	5219238	X_5219238_SNP [dm3] X_5325205_SNP [dm6]	T	C	3.347e^-4	0.678	SYNONYMOUS_CODING Mcm3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8105888	2R_8105888_SNP [dm3] 2R_12218383_SNP [dm6]	T	G	3.348e^-4	0.678	INTERGENIC
3R	9102611	3R_9102611_SNP [dm3] 3R_13276889_SNP [dm6]	G	C	3.360e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	5978722	2L_5978722_SNP [dm3] 2L_5978722_SNP [dm6]	G	T	3.364e^-4	0.678	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2240286	X_2240286_SNP [dm3] X_2346253_SNP [dm6]	C	A	3.364e^-4	0.678	NON_SYNONYMOUS_CODING ptr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15980303	2R_15980303_SNP [dm3] 2R_20092798_SNP [dm6]	A	C	3.368e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	21806580	2L_21806580_SNP [dm3] 2L_21806580_SNP [dm6]	T	C	3.372e^-4	0.678	INTERGENIC
3L	5909414	3L_5909414_SNP [dm3] 3L_5916314_SNP [dm6]	A	G	3.372e^-4	0.678	INTRON CG13288
2R	8171467	2R_8171467_SNP [dm3] 2R_12283962_SNP [dm6]	G	T	3.378e^-4	0.678	INTRON CG42700
2L	4712391	2L_4712391_SNP [dm3] 2L_4712391_SNP [dm6]	T	C	3.381e^-4	0.678	SYNONYMOUS_CODING CG34351
2L	2598176	2L_2598176_SNP [dm3] 2L_2598176_SNP [dm6]	C	A	3.386e^-4	0.678	DOWNSTREAM CR44790 INTERGENIC
2L	2694727	2L_2694727_SNP [dm3] 2L_2694727_SNP [dm6]	C	T	3.390e^-4	0.678	DOWNSTREAM CG15398 INTRON CG31690
2L	15821473	2L_15821473_SNP [dm3] 2L_15821473_SNP [dm6]	G	A	3.395e^-4	0.678	DOWNSTREAM CR44601 INTERGENIC
2R	4481312	2R_4481312_SNP [dm3] 2R_8593807_SNP [dm6]	A	C	3.398e^-4	0.678	DOWNSTREAM CG43183 & 1 other INTERGENIC
2R	8133804	2R_8133804_SNP [dm3] 2R_12246299_SNP [dm6]	T	G	3.401e^-4	0.678	DOWNSTREAM CR44315 INTERGENIC
2L	2269182	2L_2269182_SNP [dm3] 2L_2269182_SNP [dm6]	G	A	3.403e^-4	0.678	UPSTREAM CG17242 INTERGENIC
2R	17160717	2R_17160717_SNP [dm3] 2R_21273212_SNP [dm6]	T	G	3.404e^-4	0.678	INTRON Rgk3
2R	8127924	2R_8127924_SNP [dm3] 2R_12240419_SNP [dm6]	T	C	3.408e^-4	0.678	NON_SYNONYMOUS_CODING CG13170 UPSTREAM CG43315
2R	8168304	2R_8168304_SNP [dm3] 2R_12280799_SNP [dm6]	A	G	3.408e^-4	0.678	INTRON CG42700	TF binding site mE1_TFBS_chinmo
3L	1688542	3L_1688542_SNP [dm3] 3L_1688542_SNP [dm6]	C	A	3.411e^-4	0.678	UPSTREAM CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi
2R	8077982	2R_8077982_SNP [dm3] 2R_12190477_SNP [dm6]	A	G	3.413e^-4	0.678	UPSTREAM Cyp6t3 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	8734856	2R_8734856_SNP [dm3] 2R_12847351_SNP [dm6]	T	A	3.419e^-4	0.678	UPSTREAM CG17575 & 1 other DOWNSTREAM CG30486 INTRON antr
2L	1619077	2L_1619077_SNP [dm3] 2L_1619077_SNP [dm6]	G	A	3.423e^-4	0.678	DOWNSTREAM CR44603 EXON CR44603
2L	8061440	2L_8061440_SNP [dm3] 2L_8061440_SNP [dm6]	T	A	3.434e^-4	0.678	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_chinmo
3L	19630170	3L_19630170_SNP [dm3] 3L_19637070_SNP [dm6]	G	T	3.434e^-4	0.678	DOWNSTREAM CG8786 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	8129554	2R_8129554_INS [dm3] 2R_12242049_INS [dm6]	T	TAC	3.448e^-4	0.678	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8149282	2R_8149282_DEL [dm3] 2R_12261777_DEL [dm6]	CTTTTCGCGCAAGAATTTT...	C	3.451e^-4	0.678	DOWNSTREAM CR43900 INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8166675	2R_8166675_SNP [dm3] 2R_12279170_SNP [dm6]	T	C	3.452e^-4	0.678	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3L	13900094	3L_13900094_SNP [dm3] 3L_13906994_SNP [dm6]	T	G	3.454e^-4	0.678	UTR_3_PRIME Rgl
3R	13934845	3R_13934845_SNP [dm3] 3R_18109123_SNP [dm6]	G	T	3.458e^-4	0.678	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
3R	2492289	3R_2492289_SNP [dm3] 3R_6666567_SNP [dm6]	C	T	3.458e^-4	0.678	INTRON lab	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25376535	3R_25376535_SNP [dm3] 3R_29550813_SNP [dm6]	G	A	3.461e^-4	0.678	INTERGENIC
X	12756127	X_12756127_SNP [dm3] X_12862094_SNP [dm6]	T	C	3.465e^-4	0.678	INTRON Pde9
2L	15437138	2L_15437138_SNP [dm3] 2L_15437138_SNP [dm6]	G	A	3.470e^-4	0.678	DOWNSTREAM CR44861 INTERGENIC
2L	8153992	2L_8153992_SNP [dm3] 2L_8153992_SNP [dm6]	C	T	3.474e^-4	0.678	SYNONYMOUS_CODING CG43394 INTRON CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8154100	2L_8154100_SNP [dm3] 2L_8154100_SNP [dm6]	C	G	3.474e^-4	0.678	INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8154152	2L_8154152_SNP [dm3] 2L_8154152_SNP [dm6]	C	T	3.474e^-4	0.678	SPLICE_SITE_REGION CG43394 INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9479388	3R_9479388_SNP [dm3] 3R_13653666_SNP [dm6]	A	T	3.475e^-4	0.678	UTR_3_PRIME rin DOWNSTREAM Rbp4
2R	8092831	2R_8092831_SNP [dm3] 2R_12205326_SNP [dm6]	G	A	3.486e^-4	0.678	UPSTREAM CR45276 INTERGENIC
3L	14390103	3L_14390103_SNP [dm3] 3L_14397003_SNP [dm6]	A	G	3.492e^-4	0.678	INTERGENIC
2R	8106473	2R_8106473_SNP [dm3] 2R_12218968_SNP [dm6]	A	G	3.500e^-4	0.678	INTERGENIC
3L	6022383	3L_6022383_DEL [dm3] 3L_6029283_DEL [dm6]	CC	T	3.501e^-4	0.678	INTERGENIC
3L	6022386	3L_6022386_SNP [dm3] 3L_6029286_SNP [dm6]	A	C	3.501e^-4	0.678	INTERGENIC
X	5243329	X_5243329_SNP [dm3] X_5349296_SNP [dm6]	A	G	3.502e^-4	0.678	INTRON SK
2R	6332264	2R_6332264_SNP [dm3] 2R_10444759_SNP [dm6]	G	T	3.511e^-4	0.678	UPSTREAM Galphao INTRON Galphao	TF binding site mE1_TFBS_HSA
2L	18954378	2L_18954378_DEL [dm3] 2L_18954378_DEL [dm6]	AACGGTGGA	A	3.511e^-4	0.678	UTR_5_PRIME CG10621 UPSTREAM CR44741
2R	8129590	2R_8129590_SNP [dm3] 2R_12242085_SNP [dm6]	T	C	3.518e^-4	0.678	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3L	2424409	3L_2424409_SNP [dm3] 3L_2424409_SNP [dm6]	T	G	3.519e^-4	0.678	INTRON CG45186
3L	13818632	3L_13818632_SNP [dm3] 3L_13825532_SNP [dm6]	G	A	3.519e^-4	0.678	INTERGENIC
2L	7386271	2L_7386271_SNP [dm3] 2L_7386271_SNP [dm6]	C	G	3.523e^-4	0.678	INTRON CG5149	TF binding site BDTNP1_TFBS_twi
2R	8092915	2R_8092915_SNP [dm3] 2R_12205410_SNP [dm6]	C	G	3.523e^-4	0.678	UPSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6982595	2L_6982595_SNP [dm3] 2L_6982595_SNP [dm6]	A	G	3.534e^-4	0.678	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7835687	2R_7835687_SNP [dm3] 2R_11948182_SNP [dm6]	C	T	3.534e^-4	0.678	INTRON CG13188
3R	13934843	3R_13934843_SNP [dm3] 3R_18109121_SNP [dm6]	C	T	3.536e^-4	0.678	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
3R	26164137	3R_26164137_SNP [dm3] 3R_30338415_SNP [dm6]	A	G	3.538e^-4	0.678	INTRON hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	6444852	2R_6444852_SNP [dm3] 2R_10557347_SNP [dm6]	A	G	3.539e^-4	0.678	UPSTREAM psq INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8082493	2R_8082493_SNP [dm3] 2R_12194988_SNP [dm6]	T	A	3.540e^-4	0.678	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
2R	8087114	2R_8087114_SNP [dm3] 2R_12199609_SNP [dm6]	A	G	3.540e^-4	0.678	UPSTREAM CG8858 & 1 other DOWNSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8110981	2R_8110981_SNP [dm3] 2R_12223476_SNP [dm6]	T	C	3.559e^-4	0.678	DOWNSTREAM CG8854 INTERGENIC
3R	3054840	3R_3054840_SNP [dm3] 3R_7229118_SNP [dm6]	G	T	3.560e^-4	0.678	INTRON CG14608
3L	3532203	3L_3532203_DEL [dm3] 3L_3532203_DEL [dm6]	TATGGCACATT...	T	3.561e^-4	0.678	INTRON Eip63E
2L	768526	2L_768526_SNP [dm3] 2L_768526_SNP [dm6]	T	A	3.566e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5486724	2R_5486724_SNP [dm3] 2R_9599219_SNP [dm6]	G	A	3.575e^-4	0.678	SYNONYMOUS_CODING CG30338 DOWNSTREAM CG30340 INTRON CG1902 & 1 other
3L	1403679	3L_1403679_INS [dm3] 3L_1403679_INS [dm6]	G	GACGGGTTAGTGCACTTTTT...	3.579e^-4	0.678	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3R	3057218	3R_3057218_SNP [dm3] 3R_7231496_SNP [dm6]	A	T	3.581e^-4	0.678	INTRON CG14608
X	19940493	X_19940493_INS [dm3] X_20046460_INS [dm6]	A	ATATACAATATATACAACAT...	3.581e^-4	0.678	INTRON Dop2R
2R	8086831	2R_8086831_SNP [dm3] 2R_12199326_SNP [dm6]	A	G	3.585e^-4	0.678	UTR_3_PRIME RpS11 UPSTREAM CG8858 & 1 other DOWNSTREAM RpS11 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	5448945	2L_5448945_SNP [dm3] 2L_5448945_SNP [dm6]	C	G	3.585e^-4	0.678	INTERGENIC
X	3459111	X_3459111_SNP [dm3] X_3565078_SNP [dm6]	G	A	3.587e^-4	0.678	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	7778739	2R_7778739_SNP [dm3] 2R_11891234_SNP [dm6]	C	T	3.596e^-4	0.678	UTR_5_PRIME Ef1alpha48D UPSTREAM Ef1alpha48D & 1 other	TF binding site BDTNP1_TFBS_dl
3R	25343095	3R_25343095_SNP [dm3] 3R_29517373_SNP [dm6]	G	A	3.599e^-4	0.678	DOWNSTREAM CG2014 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16899434	3R_16899434_SNP [dm3] 3R_21073712_SNP [dm6]	T	C	3.603e^-4	0.678	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6724450	3L_6724450_SNP [dm3] 3L_6731350_SNP [dm6]	C	T	3.607e^-4	0.678	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5568241	2L_5568241_SNP [dm3] 2L_5568241_SNP [dm6]	C	T	3.615e^-4	0.678	INTERGENIC
2L	15307211	2L_15307211_SNP [dm3] 2L_15307211_SNP [dm6]	T	G	3.617e^-4	0.678	INTERGENIC
3L	13333814	3L_13333814_SNP [dm3] 3L_13340714_SNP [dm6]	T	G	3.618e^-4	0.678	INTERGENIC
3R	15343462	3R_15343462_SNP [dm3] 3R_19517740_SNP [dm6]	A	T	3.619e^-4	0.678	INTRON Dys
2L	838163	2L_838163_SNP [dm3] 2L_838163_SNP [dm6]	G	A	3.620e^-4	0.678	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	768110	2L_768110_SNP [dm3] 2L_768110_SNP [dm6]	C	T	3.621e^-4	0.678	INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

Cuticul_NI_34 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results