DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.277e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1647 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	12331930	2R_12331930_DEL [dm3] 2R_16444425_DEL [dm6]	TT	T	3.083e^-6	0.943	INTRON CG4409
3R	3732123	3R_3732123_DEL [dm3] 3R_7906401_DEL [dm6]	CAA	C	3.142e^-6	0.943	UPSTREAM Taf7 INTRON CG2943	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	3759385	3R_3759385_SNP [dm3] 3R_7933663_SNP [dm6]	G	A	3.281e^-6	0.943	UTR_3_PRIME dsx DOWNSTREAM dsx INTRON dsx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3887125	3R_3887125_SNP [dm3] 3R_8061403_SNP [dm6]	T	G	3.657e^-6	0.943	INTRON mAChR-B	TF binding site mE1_TFBS_inv
3R	3727301	3R_3727301_SNP [dm3] 3R_7901579_SNP [dm6]	C	G	4.891e^-6	0.943	SYNONYMOUS_CODING mRpS9 DOWNSTREAM wtrw
3L	7524569	3L_7524569_SNP [dm3] 3L_7531469_SNP [dm6]	A	G	6.044e^-6	0.943	UPSTREAM lqf INTRON lqf
3L	7523237	3L_7523237_SNP [dm3] 3L_7530137_SNP [dm6]	C	T	6.659e^-6	0.943	INTRON lqf	TF binding site mE1_TFBS_cad
2R	12338832	2R_12338832_SNP [dm3] 2R_16451327_SNP [dm6]	A	T	7.889e^-6	0.943	INTERGENIC
3R	3887121	3R_3887121_SNP [dm3] 3R_8061399_SNP [dm6]	G	A	8.183e^-6	0.943	INTRON mAChR-B	TF binding site mE1_TFBS_inv
3L	7523462	3L_7523462_SNP [dm3] 3L_7530362_SNP [dm6]	G	A	8.239e^-6	0.943	INTRON lqf
2L	9757843	2L_9757843_SNP [dm3] 2L_9757843_SNP [dm6]	A	C	8.987e^-6	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3R	12934567	3R_12934567_SNP [dm3] 3R_17108845_SNP [dm6]	G	A	9.346e^-6	0.943	SPLICE_SITE_REGION cher INTRON cher	TF binding site mE1_TFBS_cad
2L	4104744	2L_4104744_SNP [dm3] 2L_4104744_SNP [dm6]	T	C	9.514e^-6	0.943	INTRON ed
2L	9757901	2L_9757901_INS [dm3] 2L_9757901_INS [dm6]	T	TCTT	9.740e^-6	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3L	7518926	3L_7518926_SNP [dm3] 3L_7525826_SNP [dm6]	T	A	1.015e^-5	0.943	INTRON ltl
2L	9757846	2L_9757846_SNP [dm3] 2L_9757846_SNP [dm6]	G	C	1.144e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3R	3759561	3R_3759561_SNP [dm3] 3R_7933839_SNP [dm6]	C	T	1.188e^-5	0.943	UTR_3_PRIME dsx DOWNSTREAM dsx INTRON dsx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9757903	2L_9757903_SNP [dm3] 2L_9757903_SNP [dm6]	G	T	1.253e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3L	10892866	3L_10892866_SNP [dm3] 3L_10899766_SNP [dm6]	A	C	1.317e^-5	0.943	UPSTREAM Aps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	8434733	X_8434733_SNP [dm3] X_8540700_SNP [dm6]	C	T	1.353e^-5	0.943	INTRON Nrg
2R	6997655	2R_6997655_SNP [dm3] 2R_11110150_SNP [dm6]	T	A	1.356e^-5	0.943	INTRON luna
2R	12340981	2R_12340981_SNP [dm3] 2R_16453476_SNP [dm6]	T	A	1.384e^-5	0.943	INTERGENIC
3L	8751152	3L_8751152_SNP [dm3] 3L_8758052_SNP [dm6]	A	C	1.418e^-5	0.943	DOWNSTREAM CG6576 INTRON Fhos
2L	3526443	2L_3526443_SNP [dm3] 2L_3526443_SNP [dm6]	T	C	1.461e^-5	0.943	NON_SYNONYMOUS_CODING CG8852 DOWNSTREAM Spindly	TF binding site mE1_TFBS_HSA
3L	1590954	3L_1590954_SNP [dm3] 3L_1590954_SNP [dm6]	C	T	1.515e^-5	0.943	INTRON CG13917
2L	9757855	2L_9757855_SNP [dm3] 2L_9757855_SNP [dm6]	T	A	1.609e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9757864	2L_9757864_SNP [dm3] 2L_9757864_SNP [dm6]	A	T	1.609e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3L	7514680	3L_7514680_SNP [dm3] 3L_7521580_SNP [dm6]	G	A	1.803e^-5	0.943	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	26943417	3R_26943417_SNP [dm3] 3R_31117695_SNP [dm6]	T	G	1.855e^-5	0.943	INTERGENIC
2L	9757847	2L_9757847_SNP [dm3] 2L_9757847_SNP [dm6]	T	A	1.895e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2R	12338800	2R_12338800_SNP [dm3] 2R_16451295_SNP [dm6]	G	T	1.913e^-5	0.943	INTERGENIC
3L	12418526	3L_12418526_SNP [dm3] 3L_12425426_SNP [dm6]	C	T	1.940e^-5	0.943	SYNONYMOUS_CODING toe	TF binding site mE1_TFBS_cad
2L	9757867	2L_9757867_SNP [dm3] 2L_9757867_SNP [dm6]	T	G	1.946e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9757857	2L_9757857_SNP [dm3] 2L_9757857_SNP [dm6]	G	A	2.034e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9757907	2L_9757907_SNP [dm3] 2L_9757907_SNP [dm6]	A	C	2.077e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	4082586	2L_4082586_SNP [dm3] 2L_4082586_SNP [dm6]	C	T	2.189e^-5	0.943	INTRON ed
2L	1860552	2L_1860552_SNP [dm3] 2L_1860552_SNP [dm6]	C	T	2.229e^-5	0.943	INTRON CG31663
2R	12338784	2R_12338784_SNP [dm3] 2R_16451279_SNP [dm6]	A	T	2.253e^-5	0.943	INTERGENIC
3L	7515973	3L_7515973_SNP [dm3] 3L_7522873_SNP [dm6]	T	C	2.334e^-5	0.943	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6537499	2R_6537499_SNP [dm3] 2R_10649994_SNP [dm6]	C	T	2.384e^-5	0.943	DOWNSTREAM CG12934 INTERGENIC
2L	9757839	2L_9757839_SNP [dm3] 2L_9757839_SNP [dm6]	G	A	2.443e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
X	17462854	X_17462854_SNP [dm3] X_17568821_SNP [dm6]	G	A	2.455e^-5	0.943	SYNONYMOUS_CODING ppk23
2L	15023690	2L_15023690_SNP [dm3] 2L_15023690_SNP [dm6]	A	T	2.462e^-5	0.943	INTRON GABA-B-R1
2R	12338840	2R_12338840_INS [dm3] 2R_16451335_INS [dm6]	T	TT	2.484e^-5	0.943	INTERGENIC
3R	3716577	3R_3716577_SNP [dm3] 3R_7890855_SNP [dm6]	C	G	2.491e^-5	0.943	UPSTREAM wtrw DOWNSTREAM CG10092 INTRON mRpS9
X	4062359	X_4062359_SNP [dm3] X_4168326_SNP [dm6]	A	G	2.540e^-5	0.943	INTRON Fas2	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	13975678	2R_13975678_SNP [dm3] 2R_18088173_SNP [dm6]	A	C	2.593e^-5	0.943	INTRON CG34386
3R	17559930	3R_17559930_SNP [dm3] 3R_21734208_SNP [dm6]	G	A	2.716e^-5	0.943	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	12672553	3L_12672553_SNP [dm3] 3L_12679453_SNP [dm6]	A	G	2.775e^-5	0.943	INTERGENIC
2L	20435781	2L_20435781_SNP [dm3] 2L_20435781_SNP [dm6]	G	T	2.808e^-5	0.943	INTRON CG31688
2L	9757833	2L_9757833_SNP [dm3] 2L_9757833_SNP [dm6]	A	C	2.929e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2R	1565042	2R_1565042_SNP [dm3] 2R_5677537_SNP [dm6]	C	T	2.986e^-5	0.943	UTR_3_PRIME scaf
2R	9974008	2R_9974008_SNP [dm3] 2R_14086503_SNP [dm6]	G	A	3.016e^-5	0.943	INTRON Prosap
2R	9974076	2R_9974076_DEL [dm3] 2R_14086571_DEL [dm6]	TATC	T	3.117e^-5	0.943	INTRON Prosap
2R	7225370	2R_7225370_SNP [dm3] 2R_11337865_SNP [dm6]	G	A	3.176e^-5	0.943	UTR_3_PRIME kappaTry DOWNSTREAM lambdaTry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15251785	2R_15251785_SNP [dm3] 2R_19364280_SNP [dm6]	T	C	3.191e^-5	0.943	INTRON CG10051	TF binding site mE1_TFBS_cad
3R	3737683	3R_3737683_SNP [dm3] 3R_7911961_SNP [dm6]	A	C	3.231e^-5	0.943	UPSTREAM Prat DOWNSTREAM CG2846 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7518869	3L_7518869_SNP [dm3] 3L_7525769_SNP [dm6]	G	A	3.293e^-5	0.943	INTRON ltl
3L	13895902	3L_13895902_SNP [dm3] 3L_13902802_SNP [dm6]	A	T	3.351e^-5	0.943	UTR_5_PRIME dysc
2R	9976701	2R_9976701_SNP [dm3] 2R_14089196_SNP [dm6]	C	A	3.394e^-5	0.943	INTRON Prosap
3L	8683705	3L_8683705_SNP [dm3] 3L_8690605_SNP [dm6]	A	C	3.415e^-5	0.943	INTERGENIC
3R	22758941	3R_22758941_SNP [dm3] 3R_26933219_SNP [dm6]	G	A	3.416e^-5	0.943	INTRON sda
2R	5317353	2R_5317353_SNP [dm3] 2R_9429848_SNP [dm6]	C	T	3.579e^-5	0.943	INTRON Pdk
2R	12340989	2R_12340989_SNP [dm3] 2R_16453484_SNP [dm6]	G	C	3.593e^-5	0.943	INTERGENIC
2L	9757908	2L_9757908_SNP [dm3] 2L_9757908_SNP [dm6]	G	T	3.665e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	14577910	2L_14577910_SNP [dm3] 2L_14577910_SNP [dm6]	A	G	3.851e^-5	0.943	DOWNSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9757816	2L_9757816_SNP [dm3] 2L_9757816_SNP [dm6]	T	C	4.011e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
X	4707004	X_4707004_SNP [dm3] X_4812971_SNP [dm6]	A	T	4.025e^-5	0.943	INTERGENIC
2R	12765594	2R_12765594_SNP [dm3] 2R_16878089_SNP [dm6]	A	C	4.052e^-5	0.943	INTRON CG8910	TF binding site mE1_TFBS_cad
2L	14032182	2L_14032182_DEL [dm3] 2L_14032182_DEL [dm6]	CT	C	4.078e^-5	0.943	UPSTREAM CG18095 EXON CR45284
3R	3736594	3R_3736594_SNP [dm3] 3R_7910872_SNP [dm6]	C	T	4.084e^-5	0.943	SYNONYMOUS_CODING Prat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2041861	2R_2041861_SNP [dm3] 2R_6154356_SNP [dm6]	C	A	4.130e^-5	0.943	UPSTREAM tRNA:N5:42Af INTRON EcR
2R	12338836	2R_12338836_SNP [dm3] 2R_16451331_SNP [dm6]	T	G	4.225e^-5	0.943	INTERGENIC
2L	14032154	2L_14032154_INS [dm3] 2L_14032154_INS [dm6]	T	TT	4.225e^-5	0.943	UPSTREAM CG18095 EXON CR45284
3R	3767490	3R_3767490_SNP [dm3] 3R_7941768_SNP [dm6]	T	C	4.314e^-5	0.943	INTRON dsx
3R	3752904	3R_3752904_INS [dm3] 3R_7927182_INS [dm6]	G	GAG	4.346e^-5	0.943	INTRON dsx
3L	11663862	3L_11663862_SNP [dm3] 3L_11670762_SNP [dm6]	A	G	4.414e^-5	0.943	INTRON CG32085
2R	7282692	2R_7282692_SNP [dm3] 2R_11395187_SNP [dm6]	G	A	4.477e^-5	0.943	DOWNSTREAM tRNA:CR30257 INTRON sprt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18861017	3R_18861017_SNP [dm3] 3R_23035295_SNP [dm6]	T	A	4.521e^-5	0.943	INTRON CG13833
2R	12338773	2R_12338773_SNP [dm3] 2R_16451268_SNP [dm6]	T	G	4.536e^-5	0.943	INTERGENIC
2L	9757975	2L_9757975_SNP [dm3] 2L_9757975_SNP [dm6]	G	A	4.571e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	9757852	2L_9757852_SNP [dm3] 2L_9757852_SNP [dm6]	G	T	4.624e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9758035	2L_9758035_SNP [dm3] 2L_9758035_SNP [dm6]	G	A	4.818e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	7494204	3R_7494204_SNP [dm3] 3R_11668482_SNP [dm6]	C	T	4.852e^-5	0.943	NON_SYNONYMOUS_CODING CG42327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9757831	2L_9757831_SNP [dm3] 2L_9757831_SNP [dm6]	G	A	4.963e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3R	17559947	3R_17559947_SNP [dm3] 3R_21734225_SNP [dm6]	T	A	5.017e^-5	0.943	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	9757890	2L_9757890_SNP [dm3] 2L_9757890_SNP [dm6]	C	A	5.040e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2R	12338772	2R_12338772_SNP [dm3] 2R_16451267_SNP [dm6]	C	A	5.046e^-5	0.943	INTERGENIC
2L	15023671	2L_15023671_SNP [dm3] 2L_15023671_SNP [dm6]	G	A	5.057e^-5	0.943	INTRON GABA-B-R1
3R	3768204	3R_3768204_SNP [dm3] 3R_7942482_SNP [dm6]	T	C	5.099e^-5	0.943	INTRON dsx
2L	9758037	2L_9758037_SNP [dm3] 2L_9758037_SNP [dm6]	T	G	5.127e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	18154650	2R_18154650_SNP [dm3] 2R_22267145_SNP [dm6]	G	C	5.130e^-5	0.943	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3882804	3R_3882804_SNP [dm3] 3R_8057082_SNP [dm6]	G	A	5.169e^-5	0.943	INTERGENIC
3L	10898033	3L_10898033_SNP [dm3] 3L_10904933_SNP [dm6]	A	T	5.237e^-5	0.943	INTERGENIC
3R	25115832	3R_25115832_SNP [dm3] 3R_29290110_SNP [dm6]	G	A	5.246e^-5	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	3768933	3R_3768933_SNP [dm3] 3R_7943211_SNP [dm6]	T	C	5.274e^-5	0.943	INTRON dsx
2R	4510668	2R_4510668_SNP [dm3] 2R_8623163_SNP [dm6]	C	A	5.326e^-5	0.943	NON_SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2158923	2L_2158923_SNP [dm3] 2L_2158923_SNP [dm6]	A	G	5.329e^-5	0.943	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7995293	3L_7995293_SNP [dm3] 3L_8002193_SNP [dm6]	C	T	5.407e^-5	0.943	INTRON nmo
2R	12338949	2R_12338949_SNP [dm3] 2R_16451444_SNP [dm6]	C	A	5.433e^-5	0.943	INTERGENIC
3R	3882763	3R_3882763_SNP [dm3] 3R_8057041_SNP [dm6]	C	A	5.438e^-5	0.943	INTERGENIC
2R	13184997	2R_13184997_SNP [dm3] 2R_17297492_SNP [dm6]	C	G	5.449e^-5	0.943	INTRON mbl
2R	4206379	2R_4206379_SNP [dm3] 2R_8318874_SNP [dm6]	A	G	5.522e^-5	0.943	INTERGENIC
2L	19049168	2L_19049168_SNP [dm3] 2L_19049168_SNP [dm6]	T	A	5.564e^-5	0.943	UTR_5_PRIME CG10470 DOWNSTREAM Acn & 1 other	TF binding site mE1_TFBS_cad
3R	16331533	3R_16331533_SNP [dm3] 3R_20505811_SNP [dm6]	A	C	5.645e^-5	0.943	SYNONYMOUS_CODING Or92a
2L	5926266	2L_5926266_SNP [dm3] 2L_5926266_SNP [dm6]	G	T	5.674e^-5	0.943	UPSTREAM CR43926 INTRON dsf
2L	1860550	2L_1860550_SNP [dm3] 2L_1860550_SNP [dm6]	T	G	5.678e^-5	0.943	INTRON CG31663
2L	2158806	2L_2158806_SNP [dm3] 2L_2158806_SNP [dm6]	C	T	5.697e^-5	0.943	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7522435	3L_7522435_SNP [dm3] 3L_7529335_SNP [dm6]	A	C	5.780e^-5	0.943	INTRON lqf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	3595496	3L_3595496_SNP [dm3] 3L_3595496_SNP [dm6]	T	C	5.883e^-5	0.943	INTRON Eip63E	TF binding site mE1_TFBS_sens
2L	9757806	2L_9757806_SNP [dm3] 2L_9757806_SNP [dm6]	T	C	5.890e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2R	12338791	2R_12338791_DEL [dm3] 2R_16451286_DEL [dm6]	ATGTGA	A	5.996e^-5	0.943	INTERGENIC
X	7656353	X_7656353_SNP [dm3] X_7762320_SNP [dm6]	C	A	6.030e^-5	0.943	INTERGENIC
2R	15048077	2R_15048077_SNP [dm3] 2R_19160572_SNP [dm6]	T	C	6.039e^-5	0.943	SYNONYMOUS_CODING ena
3R	3733328	3R_3733328_SNP [dm3] 3R_7907606_SNP [dm6]	A	C	6.108e^-5	0.943	UTR_5_PRIME Taf7 UPSTREAM Taf7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	4264424	2L_4264424_SNP [dm3] 2L_4264424_SNP [dm6]	A	G	6.117e^-5	0.943	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9757914	2L_9757914_SNP [dm3] 2L_9757914_SNP [dm6]	A	T	6.123e^-5	0.943	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2R	12338602	2R_12338602_SNP [dm3] 2R_16451097_SNP [dm6]	A	G	6.128e^-5	0.943	INTERGENIC
3R	25597630	3R_25597630_SNP [dm3] 3R_29771908_SNP [dm6]	T	C	6.133e^-5	0.943	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7516299	3L_7516299_SNP [dm3] 3L_7523199_SNP [dm6]	T	A	6.148e^-5	0.943	INTRON ltl	TF binding site BDTNP1_TFBS_twi
2L	7095400	2L_7095400_SNP [dm3] 2L_7095400_SNP [dm6]	T	C	6.180e^-5	0.943	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3526325	2L_3526325_SNP [dm3] 2L_3526325_SNP [dm6]	G	A	6.184e^-5	0.943	NON_SYNONYMOUS_CODING CG8852	TF binding site mE1_TFBS_HSA
3R	3734523	3R_3734523_SNP [dm3] 3R_7908801_SNP [dm6]	C	T	6.186e^-5	0.943	SYNONYMOUS_CODING Taf7 DOWNSTREAM Prat	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	20474209	2L_20474209_SNP [dm3] 2L_20474209_SNP [dm6]	A	T	6.241e^-5	0.944	UPSTREAM CG43233 INTRON CR44980
2L	19049186	2L_19049186_SNP [dm3] 2L_19049186_SNP [dm6]	C	T	6.342e^-5	0.947	SYNONYMOUS_CODING CG10470 DOWNSTREAM Acn & 1 other	TF binding site mE1_TFBS_cad
2L	9758006	2L_9758006_SNP [dm3] 2L_9758006_SNP [dm6]	C	A	6.360e^-5	0.947	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	17410057	2R_17410057_SNP [dm3] 2R_21522552_SNP [dm6]	T	A	6.446e^-5	0.952	UTR_5_PRIME Egfr UPSTREAM CG30289	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	12338767	2R_12338767_SNP [dm3] 2R_16451262_SNP [dm6]	T	G	6.627e^-5	0.963	INTERGENIC
2L	9757896	2L_9757896_SNP [dm3] 2L_9757896_SNP [dm6]	T	G	6.696e^-5	0.963	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2R	12338755	2R_12338755_SNP [dm3] 2R_16451250_SNP [dm6]	G	A	6.728e^-5	0.963	INTERGENIC
2R	12338758	2R_12338758_MNP [dm3] 2R_16451253_MNP [dm6]	GGTTTC	AAACGA	6.728e^-5	0.963	INTERGENIC
3R	3144712	3R_3144712_SNP [dm3] 3R_7318990_SNP [dm6]	A	G	6.863e^-5	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11340709	2R_11340709_SNP [dm3] 2R_15453204_SNP [dm6]	T	C	6.955e^-5	0.964	INTRON CG43729
2L	15023709	2L_15023709_SNP [dm3] 2L_15023709_SNP [dm6]	C	A	6.956e^-5	0.964	INTRON GABA-B-R1
2L	15023719	2L_15023719_DEL [dm3] 2L_15023719_DEL [dm6]	CTT	AA	6.982e^-5	0.964	INTRON GABA-B-R1
2R	12341207	2R_12341207_SNP [dm3] 2R_16453702_SNP [dm6]	T	A	7.010e^-5	0.964	INTERGENIC
2L	9757807	2L_9757807_INS [dm3] 2L_9757807_INS [dm6]	T	TGTAGAATAT	7.043e^-5	0.964	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3R	26488840	3R_26488840_SNP [dm3] 3R_30663118_SNP [dm6]	G	A	7.101e^-5	0.965	INTERGENIC
X	12055295	X_12055295_SNP [dm3] X_12161262_SNP [dm6]	C	A	7.187e^-5	0.97	INTRON Ten-a
2R	7638452	2R_7638452_SNP [dm3] 2R_11750947_SNP [dm6]	A	G	7.238e^-5	0.97	INTERGENIC
2R	11490919	2R_11490919_SNP [dm3] 2R_15603414_SNP [dm6]	C	A	7.402e^-5	0.975	INTERGENIC
3R	26175570	3R_26175570_SNP [dm3] 3R_30349848_SNP [dm6]	C	T	7.429e^-5	0.975	INTRON hdc
3L	18027076	3L_18027076_INS [dm3] 3L_18033976_INS [dm6]	C	CTC	7.441e^-5	0.975	INTRON Eip75B	TF binding site BDTNP1_TFBS_sna
2L	20401223	2L_20401223_SNP [dm3] 2L_20401223_SNP [dm6]	C	G	7.484e^-5	0.975	INTRON CG10947
2R	12338782	2R_12338782_SNP [dm3] 2R_16451277_SNP [dm6]	T	G	7.673e^-5	0.985	INTERGENIC
3L	2264070	3L_2264070_SNP [dm3] 3L_2264070_SNP [dm6]	G	A	7.711e^-5	0.985	SYNONYMOUS_CODING ecd DOWNSTREAM CG13807	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5925929	2L_5925929_SNP [dm3] 2L_5925929_SNP [dm6]	G	T	7.743e^-5	0.985	UPSTREAM dsf EXON CR43926	TF binding site BDTNP1_TFBS_dl
2R	1565074	2R_1565074_SNP [dm3] 2R_5677569_SNP [dm6]	G	A	7.807e^-5	0.985	UTR_3_PRIME scaf
3R	10410451	3R_10410451_SNP [dm3] 3R_14584729_SNP [dm6]	C	T	7.829e^-5	0.985	INTRON stumps
2R	16228256	2R_16228256_SNP [dm3] 2R_20340751_SNP [dm6]	A	T	7.901e^-5	0.988	INTERGENIC
2L	19419069	2L_19419069_SNP [dm3] 2L_19419069_SNP [dm6]	T	A	8.085e^-5	1	UPSTREAM lectin-37Db DOWNSTREAM Lectin-galC1 & 1 other INTRON Pax
3R	19486823	3R_19486823_SNP [dm3] 3R_23661101_SNP [dm6]	A	C	8.128e^-5	1	INTRON CG31145
2R	20515636	2R_20515636_SNP [dm3] 2R_24628113_SNP [dm6]	C	A	8.379e^-5	1	DOWNSTREAM snoRNA:Me18S-G393 INTRON CG13594
2L	19038075	2L_19038075_SNP [dm3] 2L_19038075_SNP [dm6]	T	G	8.434e^-5	1	INTRON mib2	TF binding site mE1_TFBS_cad
3R	3734844	3R_3734844_SNP [dm3] 3R_7909122_SNP [dm6]	G	C	8.510e^-5	1	NON_SYNONYMOUS_CODING Taf7 DOWNSTREAM Prat	TF binding site mE1_TFBS_cad
3R	17216461	3R_17216461_SNP [dm3] 3R_21390739_SNP [dm6]	G	A	8.519e^-5	1	DOWNSTREAM bap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	8433264	X_8433264_SNP [dm3] X_8539231_SNP [dm6]	C	T	8.622e^-5	1	INTRON Nrg
2L	2158913	2L_2158913_SNP [dm3] 2L_2158913_SNP [dm6]	C	T	8.821e^-5	1	NON_SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26175569	3R_26175569_SNP [dm3] 3R_30349847_SNP [dm6]	T	C	8.934e^-5	1	INTRON hdc
3R	9478660	3R_9478660_SNP [dm3] 3R_13652938_SNP [dm6]	G	T	8.957e^-5	1	UTR_3_PRIME rin DOWNSTREAM rin
3R	20343264	3R_20343264_SNP [dm3] 3R_24517542_SNP [dm6]	T	C	8.998e^-5	1	UPSTREAM Pp1alpha-96A INTRON CG13617	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	9758217	2L_9758217_SNP [dm3] 2L_9758217_SNP [dm6]	G	A	9.077e^-5	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	16241971	2R_16241971_SNP [dm3] 2R_20354466_SNP [dm6]	G	T	9.078e^-5	1	SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3149013	3R_3149013_SNP [dm3] 3R_7323291_SNP [dm6]	A	C	9.099e^-5	1	INTERGENIC
2R	17135582	2R_17135582_SNP [dm3] 2R_21248077_SNP [dm6]	C	T	9.154e^-5	1	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7379626	2R_7379626_SNP [dm3] 2R_11492121_SNP [dm6]	G	A	9.228e^-5	1	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13104056	2L_13104056_SNP [dm3] 2L_13104056_SNP [dm6]	G	C	9.256e^-5	1	UPSTREAM CR45461 INTERGENIC
2L	9627578	2L_9627578_SNP [dm3] 2L_9627578_SNP [dm6]	A	G	9.355e^-5	1	INTERGENIC
3R	13073125	3R_13073125_SNP [dm3] 3R_17247403_SNP [dm6]	C	A	9.372e^-5	1	NON_SYNONYMOUS_CODING beat-IIb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27392333	3R_27392333_SNP [dm3] 3R_31566611_SNP [dm6]	T	A	9.564e^-5	1	DOWNSTREAM nyo INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9758117	2L_9758117_SNP [dm3] 2L_9758117_SNP [dm6]	T	C	9.794e^-5	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	3852342	3R_3852342_SNP [dm3] 3R_8026620_SNP [dm6]	G	A	9.800e^-5	1	INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	2158860	2L_2158860_SNP [dm3] 2L_2158860_SNP [dm6]	G	C	9.850e^-5	1	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2132328	3R_2132328_SNP [dm3] 3R_6306606_SNP [dm6]	G	A	9.867e^-5	1	DOWNSTREAM CG31556 & 1 other INTERGENIC
X	5030697	X_5030697_SNP [dm3] X_5136664_SNP [dm6]	G	A	9.904e^-5	1	INTRON rg & 1 other
3L	12418787	3L_12418787_SNP [dm3] 3L_12425687_SNP [dm6]	C	T	9.945e^-5	1	INTRON toe
3L	18116353	3L_18116353_SNP [dm3] 3L_18123253_SNP [dm6]	G	A	9.986e^-5	1	INTERGENIC
2L	2158926	2L_2158926_SNP [dm3] 2L_2158926_SNP [dm6]	C	T	1.011e^-4	1	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14195606	3R_14195606_SNP [dm3] 3R_18369884_SNP [dm6]	A	T	1.014e^-4	1	NON_SYNONYMOUS_CODING gl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10695232	3L_10695232_SNP [dm3] 3L_10702132_SNP [dm6]	A	G	1.015e^-4	1	INTERGENIC
3L	10695233	3L_10695233_SNP [dm3] 3L_10702133_SNP [dm6]	A	G	1.015e^-4	1	INTERGENIC
2R	12330800	2R_12330800_SNP [dm3] 2R_16443295_SNP [dm6]	A	T	1.016e^-4	1	NON_SYNONYMOUS_CODING CG4409
3L	4724680	3L_4724680_SNP [dm3] 3L_4724680_SNP [dm6]	C	A	1.022e^-4	1	INTRON RhoGEF64C
3L	12418859	3L_12418859_SNP [dm3] 3L_12425759_SNP [dm6]	G	A	1.024e^-4	1	INTRON toe
3R	17216470	3R_17216470_SNP [dm3] 3R_21390748_SNP [dm6]	T	A	1.025e^-4	1	DOWNSTREAM bap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	2266061	2L_2266061_SNP [dm3] 2L_2266061_SNP [dm6]	G	A	1.031e^-4	1	UPSTREAM CG34049 INTERGENIC
2L	9757885	2L_9757885_SNP [dm3] 2L_9757885_SNP [dm6]	T	C	1.033e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9757887	2L_9757887_SNP [dm3] 2L_9757887_SNP [dm6]	C	A	1.033e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3L	5545289	3L_5545289_SNP [dm3] 3L_5552189_SNP [dm6]	A	C	1.045e^-4	1	INTERGENIC
3L	16277610	3L_16277610_SNP [dm3] 3L_16284510_SNP [dm6]	T	A	1.052e^-4	1	UPSTREAM CG13048 DOWNSTREAM CG13047 INTERGENIC
3L	8752699	3L_8752699_SNP [dm3] 3L_8759599_SNP [dm6]	A	G	1.055e^-4	1	NON_SYNONYMOUS_CODING Fhos
2L	11533171	2L_11533171_SNP [dm3] 2L_11533171_SNP [dm6]	G	T	1.074e^-4	1	NON_SYNONYMOUS_CODING CG34162 EXON CR42743
X	16090825	X_16090825_SNP [dm3] X_16196792_SNP [dm6]	G	T	1.075e^-4	1	INTERGENIC
3R	2132569	3R_2132569_SNP [dm3] 3R_6306847_SNP [dm6]	G	T	1.076e^-4	1	DOWNSTREAM CG31556 & 1 other INTERGENIC
3R	7229494	3R_7229494_SNP [dm3] 3R_11403772_SNP [dm6]	T	C	1.078e^-4	1	UTR_3_PRIME pros
3R	965322	3R_965322_INS [dm3] 3R_5139600_INS [dm6]	G	GTCCG	1.079e^-4	1	UPSTREAM CG12589 INTERGENIC
3R	17875852	3R_17875852_SNP [dm3] 3R_22050130_SNP [dm6]	G	A	1.080e^-4	1	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13631813	3L_13631813_SNP [dm3] 3L_13638713_SNP [dm6]	T	A	1.089e^-4	1	INTRON bru-3
2R	12338781	2R_12338781_SNP [dm3] 2R_16451276_SNP [dm6]	C	T	1.096e^-4	1	INTERGENIC
2R	12343587	2R_12343587_DEL [dm3] 2R_16456082_DEL [dm6]	CG	C	1.120e^-4	1	INTERGENIC
3R	3741397	3R_3741397_SNP [dm3] 3R_7915675_SNP [dm6]	A	T	1.138e^-4	1	DOWNSTREAM CG10445 INTRON CG2678
X	8434735	X_8434735_SNP [dm3] X_8540702_SNP [dm6]	C	T	1.144e^-4	1	INTRON Nrg
2L	7095379	2L_7095379_SNP [dm3] 2L_7095379_SNP [dm6]	G	T	1.145e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7633961	2R_7633961_SNP [dm3] 2R_11746456_SNP [dm6]	T	A	1.165e^-4	1	INTERGENIC
2R	15779210	2R_15779210_SNP [dm3] 2R_19891705_SNP [dm6]	A	G	1.166e^-4	1	INTERGENIC
2R	15249609	2R_15249609_SNP [dm3] 2R_19362104_SNP [dm6]	A	T	1.175e^-4	1	INTRON CG11961
3L	11445640	3L_11445640_SNP [dm3] 3L_11452540_SNP [dm6]	T	C	1.176e^-4	1	INTERGENIC
3R	21989341	3R_21989341_SNP [dm3] 3R_26163619_SNP [dm6]	C	A	1.176e^-4	1	INTERGENIC
3L	12672560	3L_12672560_SNP [dm3] 3L_12679460_SNP [dm6]	G	T	1.177e^-4	1	INTERGENIC
3L	10695012	3L_10695012_SNP [dm3] 3L_10701912_SNP [dm6]	G	T	1.179e^-4	1	INTERGENIC
2R	18725137	2R_18725137_SNP [dm3] 2R_22837614_SNP [dm6]	A	C	1.179e^-4	1	DOWNSTREAM CG12490 INTRON CG9825
2L	4104610	2L_4104610_SNP [dm3] 2L_4104610_SNP [dm6]	G	A	1.180e^-4	1	INTRON ed
2L	15023736	2L_15023736_SNP [dm3] 2L_15023736_SNP [dm6]	G	A	1.185e^-4	1	INTRON GABA-B-R1
2R	4206398	2R_4206398_SNP [dm3] 2R_8318893_SNP [dm6]	C	A	1.196e^-4	1	INTERGENIC
X	17226489	X_17226489_SNP [dm3] X_17332456_SNP [dm6]	T	A	1.200e^-4	1	INTERGENIC
2L	9757880	2L_9757880_SNP [dm3] 2L_9757880_SNP [dm6]	T	G	1.200e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2R	13185039	2R_13185039_SNP [dm3] 2R_17297534_SNP [dm6]	A	T	1.209e^-4	1	INTRON mbl
3R	17163739	3R_17163739_SNP [dm3] 3R_21338017_SNP [dm6]	A	T	1.211e^-4	1	INTRON CG16791	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24244369	3R_24244369_SNP [dm3] 3R_28418647_SNP [dm6]	A	T	1.220e^-4	1	UTR_5_PRIME beat-VI	TF binding site mE1_TFBS_HSA
2L	14012757	2L_14012757_SNP [dm3] 2L_14012757_SNP [dm6]	G	C	1.242e^-4	1	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_inv
2L	14012759	2L_14012759_SNP [dm3] 2L_14012759_SNP [dm6]	A	C	1.242e^-4	1	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_inv
2R	10437941	2R_10437941_SNP [dm3] 2R_14550436_SNP [dm6]	C	A	1.255e^-4	1	INTRON ttv
3R	21989336	3R_21989336_SNP [dm3] 3R_26163614_SNP [dm6]	T	C	1.258e^-4	1	INTERGENIC
2R	18634096	2R_18634096_SNP [dm3] 2R_22746591_SNP [dm6]	G	T	1.274e^-4	1	INTRON CG42260
3L	10695016	3L_10695016_SNP [dm3] 3L_10701916_SNP [dm6]	G	A	1.274e^-4	1	INTERGENIC
3R	27122951	3R_27122951_SNP [dm3] 3R_31297229_SNP [dm6]	C	G	1.280e^-4	1	INTERGENIC
2L	9757785	2L_9757785_SNP [dm3] 2L_9757785_SNP [dm6]	T	A	1.289e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3R	13072530	3R_13072530_SNP [dm3] 3R_17246808_SNP [dm6]	G	T	1.315e^-4	1	INTRON beat-IIb
X	10215019	X_10215019_SNP [dm3] X_10320986_SNP [dm6]	A	C	1.321e^-4	1	INTRON alpha-Man-I
3R	21989373	3R_21989373_SNP [dm3] 3R_26163651_SNP [dm6]	C	T	1.322e^-4	1	INTERGENIC
3R	21989378	3R_21989378_SNP [dm3] 3R_26163656_SNP [dm6]	G	A	1.322e^-4	1	INTERGENIC
3R	21989380	3R_21989380_SNP [dm3] 3R_26163658_SNP [dm6]	T	C	1.322e^-4	1	INTERGENIC
3L	1925715	3L_1925715_SNP [dm3] 3L_1925715_SNP [dm6]	T	A	1.324e^-4	1	DOWNSTREAM tRNA:CR32312 INTRON Dbx
2R	730931	2R_730931_DEL [dm3] 2R_4843426_DEL [dm6]	ATGGACG	A	1.346e^-4	1	INTERGENIC	transposable element FlyBase
3R	21989351	3R_21989351_INS [dm3] 3R_26163629_INS [dm6]	A	ACTACTTAAAAGAGTAGC...	1.348e^-4	1	INTERGENIC
3R	21989354	3R_21989354_INS [dm3] 3R_26163632_INS [dm6]	T	TTTA	1.348e^-4	1	INTERGENIC
3L	2426075	3L_2426075_SNP [dm3] 3L_2426075_SNP [dm6]	G	T	1.373e^-4	1	INTRON CG45186	TF binding site mE1_TFBS_bab1
2R	1565106	2R_1565106_SNP [dm3] 2R_5677601_SNP [dm6]	T	C	1.395e^-4	1	UTR_3_PRIME scaf
2L	12839675	2L_12839675_DEL [dm3] 2L_12839675_DEL [dm6]	CCCCC	C	1.405e^-4	1	INTERGENIC
3R	26783355	3R_26783355_SNP [dm3] 3R_30957633_SNP [dm6]	G	A	1.412e^-4	1	INTERGENIC
3R	629547	3R_629547_SNP [dm3] 3R_4803825_SNP [dm6]	A	G	1.426e^-4	1	UPSTREAM ctrip INTRON ctrip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4104700	2L_4104700_SNP [dm3] 2L_4104700_SNP [dm6]	A	G	1.435e^-4	1	INTRON ed
3L	12414308	3L_12414308_SNP [dm3] 3L_12421208_SNP [dm6]	T	G	1.447e^-4	1	INTERGENIC
2R	19149764	2R_19149764_SNP [dm3] 2R_23262241_SNP [dm6]	A	T	1.447e^-4	1	INTERGENIC
2R	8353159	2R_8353159_SNP [dm3] 2R_12465654_SNP [dm6]	T	A	1.450e^-4	1	DOWNSTREAM dgt5 & 1 other INTERGENIC
3L	5931239	3L_5931239_SNP [dm3] 3L_5938139_SNP [dm6]	G	T	1.455e^-4	1	INTRON CG33993
3L	2292876	3L_2292876_SNP [dm3] 3L_2292876_SNP [dm6]	G	A	1.468e^-4	1	INTRON MsR2
3R	629551	3R_629551_SNP [dm3] 3R_4803829_SNP [dm6]	A	C	1.472e^-4	1	UPSTREAM ctrip INTRON ctrip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11095515	2L_11095515_SNP [dm3] 2L_11095515_SNP [dm6]	T	C	1.475e^-4	1	UTR_3_PRIME Ge-1 DOWNSTREAM CG4705	TF binding site mE1_TFBS_HSA
3R	3755985	3R_3755985_SNP [dm3] 3R_7930263_SNP [dm6]	G	A	1.483e^-4	1	SYNONYMOUS_CODING dsx DOWNSTREAM dsx	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17374021	2R_17374021_SNP [dm3] 2R_21486516_SNP [dm6]	G	T	1.496e^-4	1	DOWNSTREAM Fkbp14 INTRON Sara	TF binding site mE1_TFBS_HSA
3R	629537	3R_629537_DEL [dm3] 3R_4803815_DEL [dm6]	CAACTTGCC	C	1.496e^-4	1	UPSTREAM ctrip INTRON ctrip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19044832	2L_19044832_SNP [dm3] 2L_19044832_SNP [dm6]	A	G	1.501e^-4	1	SYNONYMOUS_CODING Ttc19 UPSTREAM Acn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7095371	2L_7095371_SNP [dm3] 2L_7095371_SNP [dm6]	A	G	1.502e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9855349	2L_9855349_SNP [dm3] 2L_9855349_SNP [dm6]	C	T	1.503e^-4	1	INTRON nAChRalpha6
3L	5545270	3L_5545270_SNP [dm3] 3L_5552170_SNP [dm6]	C	A	1.506e^-4	1	INTERGENIC
2L	13589305	2L_13589305_DEL [dm3] 2L_13589305_DEL [dm6]	TT	T	1.509e^-4	1	INTRON kuz
2L	14246298	2L_14246298_SNP [dm3] 2L_14246298_SNP [dm6]	A	G	1.518e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9757775	2L_9757775_SNP [dm3] 2L_9757775_SNP [dm6]	T	C	1.522e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3L	5932662	3L_5932662_DEL [dm3] 3L_5939562_DEL [dm6]	TA	T	1.534e^-4	1	INTRON CG33993
3R	3736123	3R_3736123_SNP [dm3] 3R_7910401_SNP [dm6]	G	T	1.537e^-4	1	SYNONYMOUS_CODING Prat DOWNSTREAM Taf7	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	17160399	X_17160399_SNP [dm3] X_17266366_SNP [dm6]	T	G	1.539e^-4	1	INTRON f
X	17462700	X_17462700_SNP [dm3] X_17568667_SNP [dm6]	A	G	1.539e^-4	1	INTRON ppk23
3R	21989388	3R_21989388_SNP [dm3] 3R_26163666_SNP [dm6]	A	T	1.549e^-4	1	INTERGENIC
2L	9757841	2L_9757841_SNP [dm3] 2L_9757841_SNP [dm6]	T	A	1.552e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2R	15251691	2R_15251691_SNP [dm3] 2R_19364186_SNP [dm6]	T	C	1.555e^-4	1	INTRON CG10051	TF binding site mE1_TFBS_cad
3R	2135343	3R_2135343_SNP [dm3] 3R_6309621_SNP [dm6]	A	T	1.563e^-4	1	UPSTREAM CG31560 & 1 other INTERGENIC
3R	629464	3R_629464_INS [dm3] 3R_4803742_INS [dm6]	C	CT	1.564e^-4	1	UPSTREAM ctrip INTRON ctrip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14056743	2L_14056743_SNP [dm3] 2L_14056743_SNP [dm6]	A	G	1.565e^-4	1	INTRON nAChRalpha5
2L	7095335	2L_7095335_SNP [dm3] 2L_7095335_SNP [dm6]	A	G	1.569e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25115369	3R_25115369_SNP [dm3] 3R_29289647_SNP [dm6]	G	T	1.571e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13416017	2R_13416017_SNP [dm3] 2R_17528512_SNP [dm6]	A	G	1.582e^-4	1	INTRON Patronin
X	2430417	X_2430417_SNP [dm3] X_2536384_SNP [dm6]	C	T	1.588e^-4	1	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	9757792	2L_9757792_SNP [dm3] 2L_9757792_SNP [dm6]	T	C	1.604e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9719337	2L_9719337_SNP [dm3] 2L_9719337_SNP [dm6]	T	A	1.604e^-4	1	INTRON Nckx30C
2L	9855342	2L_9855342_INS [dm3] 2L_9855342_INS [dm6]	G	TT	1.606e^-4	1	INTRON nAChRalpha6
2L	14056739	2L_14056739_SNP [dm3] 2L_14056739_SNP [dm6]	G	T	1.609e^-4	1	INTRON nAChRalpha5
3L	2309962	3L_2309962_SNP [dm3] 3L_2309962_SNP [dm6]	G	A	1.615e^-4	1	INTERGENIC
3L	5930879	3L_5930879_SNP [dm3] 3L_5937779_SNP [dm6]	G	A	1.621e^-4	1	INTRON CG33993
2L	1436339	2L_1436339_SNP [dm3] 2L_1436339_SNP [dm6]	G	A	1.630e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3167009	3R_3167009_SNP [dm3] 3R_7341287_SNP [dm6]	G	A	1.641e^-4	1	INTERGENIC
3L	18140632	3L_18140632_SNP [dm3] 3L_18147532_SNP [dm6]	T	C	1.653e^-4	1	INTERGENIC
3R	1773878	3R_1773878_SNP [dm3] 3R_5948156_SNP [dm6]	C	G	1.675e^-4	1	INTRON CG34113
2L	1436328	2L_1436328_SNP [dm3] 2L_1436328_SNP [dm6]	G	A	1.682e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5447933	2L_5447933_SNP [dm3] 2L_5447933_SNP [dm6]	T	C	1.689e^-4	1	INTERGENIC
2R	19309000	2R_19309000_SNP [dm3] 2R_23421477_SNP [dm6]	T	A	1.696e^-4	1	DOWNSTREAM CG9815 INTERGENIC
2R	12339762	2R_12339762_SNP [dm3] 2R_16452257_SNP [dm6]	A	T	1.697e^-4	1	INTERGENIC
2R	17547598	2R_17547598_SNP [dm3] 2R_21660093_SNP [dm6]	A	G	1.711e^-4	1	UPSTREAM Rae1 DOWNSTREAM pirk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	3173136	3R_3173136_SNP [dm3] 3R_7347414_SNP [dm6]	A	C	1.716e^-4	1	SYNONYMOUS_CODING nxf4	TF binding site mE1_TFBS_sens
3R	3192710	3R_3192710_SNP [dm3] 3R_7366988_SNP [dm6]	A	T	1.716e^-4	1	NON_SYNONYMOUS_CODING MstProx DOWNSTREAM Mst84Da	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	9757778	2L_9757778_SNP [dm3] 2L_9757778_SNP [dm6]	G	C	1.718e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2R	13184791	2R_13184791_DEL [dm3] 2R_17297286_DEL [dm6]	TT	A	1.721e^-4	1	INTRON mbl
3L	18982300	3L_18982300_SNP [dm3] 3L_18989200_SNP [dm6]	T	G	1.722e^-4	1	SYNONYMOUS_CODING CG34256 UPSTREAM CG11619 DOWNSTREAM CG18135
3R	19763619	3R_19763619_SNP [dm3] 3R_23937897_SNP [dm6]	A	G	1.725e^-4	1	SYNONYMOUS_CODING Gdh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9757737	2L_9757737_SNP [dm3] 2L_9757737_SNP [dm6]	G	T	1.741e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
2R	19150396	2R_19150396_SNP [dm3] 2R_23262873_SNP [dm6]	C	A	1.743e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4520435	3L_4520435_SNP [dm3] 3L_4520435_SNP [dm6]	A	T	1.760e^-4	1	INTRON Tie
3R	24850878	3R_24850878_SNP [dm3] 3R_29025156_SNP [dm6]	T	C	1.771e^-4	1	SYNONYMOUS_CODING CG14518 DOWNSTREAM CR45567
2R	14401453	2R_14401453_SNP [dm3] 2R_18513948_SNP [dm6]	T	G	1.785e^-4	1	UPSTREAM CG43066 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl
2R	4206384	2R_4206384_SNP [dm3] 2R_8318879_SNP [dm6]	A	G	1.789e^-4	1	INTERGENIC
3L	6861772	3L_6861772_SNP [dm3] 3L_6868672_SNP [dm6]	T	C	1.798e^-4	1	INTERGENIC
3R	3762591	3R_3762591_SNP [dm3] 3R_7936869_SNP [dm6]	C	G	1.807e^-4	1	INTRON dsx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20292346	2L_20292346_SNP [dm3] 2L_20292346_SNP [dm6]	C	G	1.809e^-4	1	INTERGENIC
X	9305457	X_9305457_DEL [dm3] X_9411424_DEL [dm6]	AGGT	A	1.839e^-4	1	INTRON mgl
2R	15251686	2R_15251686_DEL [dm3] 2R_19364181_DEL [dm6]	TT	T	1.863e^-4	1	INTRON CG10051	TF binding site mE1_TFBS_cad
X	6810516	X_6810516_SNP [dm3] X_6916483_SNP [dm6]	G	A	1.874e^-4	1	INTRON CG14431
3R	21337061	3R_21337061_SNP [dm3] 3R_25511339_SNP [dm6]	A	T	1.888e^-4	1	INTERGENIC
2R	4206380	2R_4206380_SNP [dm3] 2R_8318875_SNP [dm6]	G	A	1.896e^-4	1	INTERGENIC
3L	6557131	3L_6557131_SNP [dm3] 3L_6564031_SNP [dm6]	C	T	1.896e^-4	1	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17216193	3R_17216193_SNP [dm3] 3R_21390471_SNP [dm6]	G	A	1.903e^-4	1	DOWNSTREAM bap INTERGENIC
3R	7493848	3R_7493848_SNP [dm3] 3R_11668126_SNP [dm6]	A	T	1.905e^-4	1	NON_SYNONYMOUS_CODING CG42327	TF binding site mE1_TFBS_sens
3R	9905393	3R_9905393_SNP [dm3] 3R_14079671_SNP [dm6]	G	A	1.910e^-4	1	INTRON foxo	TF binding site mE1_TFBS_cad
3L	11185901	3L_11185901_SNP [dm3] 3L_11192801_SNP [dm6]	G	A	1.916e^-4	1	INTRON GlcAT-P
2L	9855352	2L_9855352_SNP [dm3] 2L_9855352_SNP [dm6]	A	T	1.919e^-4	1	INTRON nAChRalpha6
3R	2649403	3R_2649403_DEL [dm3] 3R_6823681_DEL [dm6]	AGGTTGACA	A	1.925e^-4	1	UTR_3_PRIME Scr UPSTREAM tRNA:K5:84ABa DOWNSTREAM 7SLRNA:CR32864	regulatory region REDfly_CRMs
2L	2266078	2L_2266078_SNP [dm3] 2L_2266078_SNP [dm6]	A	T	1.932e^-4	1	UPSTREAM CG34049 INTERGENIC
X	20573372	X_20573372_SNP [dm3] X_20702345_SNP [dm6]	C	T	1.934e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	16397965	2L_16397965_SNP [dm3] 2L_16397965_SNP [dm6]	T	A	1.946e^-4	1	INTERGENIC
3L	5931200	3L_5931200_SNP [dm3] 3L_5938100_SNP [dm6]	A	T	1.950e^-4	1	INTRON CG33993
2R	7084310	2R_7084310_SNP [dm3] 2R_11196805_SNP [dm6]	T	G	1.951e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	13621949	2L_13621949_SNP [dm3] 2L_13621949_SNP [dm6]	A	T	1.958e^-4	1	INTRON kuz
2L	15881899	2L_15881899_SNP [dm3] 2L_15881899_SNP [dm6]	T	A	1.960e^-4	1	DOWNSTREAM CG44475 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	9757966	2L_9757966_SNP [dm3] 2L_9757966_SNP [dm6]	G	A	1.962e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	3858917	3R_3858917_SNP [dm3] 3R_8033195_SNP [dm6]	G	A	1.969e^-4	1	UPSTREAM unc-45 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9624285	3R_9624285_SNP [dm3] 3R_13798563_SNP [dm6]	T	C	1.972e^-4	1	UPSTREAM tRNA:CR31331 DOWNSTREAM tRNA:CR31588 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17263962	2R_17263962_SNP [dm3] 2R_21376457_SNP [dm6]	T	A	1.978e^-4	1	INTRON cv-2
3R	518661	3R_518661_DEL [dm3] 3R_4692939_DEL [dm6]	TAA	T	1.978e^-4	1	INTRON CG43427
2L	14056745	2L_14056745_SNP [dm3] 2L_14056745_SNP [dm6]	C	T	1.987e^-4	1	INTRON nAChRalpha5
X	5045184	X_5045184_SNP [dm3] X_5151151_SNP [dm6]	A	C	1.995e^-4	1	INTRON rg & 1 other
X	2430418	X_2430418_SNP [dm3] X_2536385_SNP [dm6]	T	C	2.009e^-4	1	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	3812575	2R_3812575_INS [dm3] 2R_7925070_INS [dm6]	A	AG	2.019e^-4	1	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	11903395	3L_11903395_SNP [dm3] 3L_11910295_SNP [dm6]	C	A	2.027e^-4	1	INTRON CG44837
2R	7583208	2R_7583208_SNP [dm3] 2R_11695703_SNP [dm6]	G	T	2.028e^-4	1	UTR_3_PRIME CG13197 DOWNSTREAM CG13197
3R	4065663	3R_4065663_SNP [dm3] 3R_8239941_SNP [dm6]	T	C	2.038e^-4	1	DOWNSTREAM CG9636 INTRON Ada2b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3L	4520479	3L_4520479_SNP [dm3] 3L_4520479_SNP [dm6]	A	G	2.039e^-4	1	INTRON Tie
3L	7562884	3L_7562884_SNP [dm3] 3L_7569784_SNP [dm6]	G	A	2.044e^-4	1	DOWNSTREAM frac INTERGENIC
3R	3213117	3R_3213117_SNP [dm3] 3R_7387395_SNP [dm6]	A	G	2.047e^-4	1	UPSTREAM CR45560 INTERGENIC
3L	14558163	3L_14558163_INS [dm3] 3L_14565063_INS [dm6]	T	TCAG	2.049e^-4	1	INTERGENIC
3L	8161415	3L_8161415_SNP [dm3] 3L_8168315_SNP [dm6]	C	A	2.052e^-4	1	INTERGENIC
3R	25115987	3R_25115987_SNP [dm3] 3R_29290265_SNP [dm6]	C	A	2.060e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	19832875	2R_19832875_SNP [dm3] 2R_23945352_SNP [dm6]	A	G	2.067e^-4	1	INTRON Galphas	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24375005	3R_24375005_SNP [dm3] 3R_28549283_SNP [dm6]	T	C	2.071e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10795437	3L_10795437_SNP [dm3] 3L_10802337_SNP [dm6]	G	A	2.073e^-4	1	UTR_3_PRIME CG12523 DOWNSTREAM CG12523
3R	17947115	3R_17947115_SNP [dm3] 3R_22121393_SNP [dm6]	A	G	2.074e^-4	1	INTRON CG42390
3L	5545285	3L_5545285_SNP [dm3] 3L_5552185_SNP [dm6]	C	A	2.075e^-4	1	INTERGENIC
3L	16742742	3L_16742742_SNP [dm3] 3L_16749642_SNP [dm6]	C	T	2.077e^-4	1	INTERGENIC
3L	20031691	3L_20031691_SNP [dm3] 3L_20038591_SNP [dm6]	A	G	2.080e^-4	1	INTERGENIC
3R	13647627	3R_13647627_SNP [dm3] 3R_17821905_SNP [dm6]	T	A	2.081e^-4	1	UTR_5_PRIME tinc INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	14146755	3R_14146755_DEL [dm3] 3R_18321033_DEL [dm6]	TT	T	2.096e^-4	1	INTRON CG31235
X	5765427	X_5765427_SNP [dm3] X_5871394_SNP [dm6]	C	T	2.102e^-4	1	SYNONYMOUS_CODING GAA1	TF binding site mE1_TFBS_cad
2L	10563435	2L_10563435_SNP [dm3] 2L_10563435_SNP [dm6]	C	T	2.116e^-4	1	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4206383	2R_4206383_SNP [dm3] 2R_8318878_SNP [dm6]	T	A	2.132e^-4	1	INTERGENIC
2L	14976449	2L_14976449_SNP [dm3] 2L_14976449_SNP [dm6]	C	T	2.134e^-4	1	INTRON mol
X	8434767	X_8434767_SNP [dm3] X_8540734_SNP [dm6]	C	T	2.146e^-4	1	INTRON Nrg
2R	9779862	2R_9779862_SNP [dm3] 2R_13892357_SNP [dm6]	T	A	2.147e^-4	1	SYNONYMOUS_CODING shot INTRON shot
X	8072368	X_8072368_SNP [dm3] X_8178335_SNP [dm6]	A	T	2.150e^-4	1	UPSTREAM sdt INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14146689	3R_14146689_SNP [dm3] 3R_18320967_SNP [dm6]	A	C	2.150e^-4	1	INTRON CG31235
2R	12343648	2R_12343648_SNP [dm3] 2R_16456143_SNP [dm6]	T	C	2.161e^-4	1	INTERGENIC
2L	9089733	2L_9089733_SNP [dm3] 2L_9089733_SNP [dm6]	A	C	2.169e^-4	1	DOWNSTREAM Toll-4 INTERGENIC
3L	7549743	3L_7549743_SNP [dm3] 3L_7556643_SNP [dm6]	G	A	2.170e^-4	1	NON_SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	747648	2R_747648_SNP [dm3] 2R_4860143_SNP [dm6]	C	G	2.184e^-4	1	INTERGENIC	transposable element FlyBase
3R	21989124	3R_21989124_SNP [dm3] 3R_26163402_SNP [dm6]	T	C	2.190e^-4	1	INTERGENIC
X	4706947	X_4706947_SNP [dm3] X_4812914_SNP [dm6]	A	T	2.197e^-4	1	INTERGENIC
2R	14401440	2R_14401440_SNP [dm3] 2R_18513935_SNP [dm6]	C	T	2.197e^-4	1	UPSTREAM CG43066 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16787078	2R_16787078_SNP [dm3] 2R_20899573_SNP [dm6]	G	A	2.199e^-4	1	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	13850342	3L_13850342_SNP [dm3] 3L_13857242_SNP [dm6]	A	G	2.204e^-4	1	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9757897	2L_9757897_SNP [dm3] 2L_9757897_SNP [dm6]	G	T	2.221e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2R	17355328	2R_17355328_DEL [dm3] 2R_21467823_DEL [dm6]	TTAAGCAAGGTGTTTAAGAT...	T	2.223e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355379	2R_17355379_SNP [dm3] 2R_21467874_SNP [dm6]	T	C	2.223e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355385	2R_17355385_DEL [dm3] 2R_21467880_DEL [dm6]	AT	G	2.223e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355390	2R_17355390_SNP [dm3] 2R_21467885_SNP [dm6]	T	A	2.223e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355391	2R_17355391_SNP [dm3] 2R_21467886_SNP [dm6]	C	A	2.223e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355414	2R_17355414_DEL [dm3] 2R_21467909_DEL [dm6]	TTTCC	T	2.223e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355421	2R_17355421_SNP [dm3] 2R_21467916_SNP [dm6]	A	T	2.223e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17355438	2R_17355438_MNP [dm3] 2R_21467933_MNP [dm6]	GCCG	ATGA	2.223e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22909280	3R_22909280_SNP [dm3] 3R_27083558_SNP [dm6]	G	A	2.225e^-4	1	SYNONYMOUS_CODING Cpr97Ea DOWNSTREAM CG14257	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20031655	3L_20031655_SNP [dm3] 3L_20038555_SNP [dm6]	T	C	2.225e^-4	1	INTERGENIC
2R	7394614	2R_7394614_SNP [dm3] 2R_11507109_SNP [dm6]	T	A	2.230e^-4	1	UTR_3_PRIME inv
3R	629637	3R_629637_SNP [dm3] 3R_4803915_SNP [dm6]	T	C	2.239e^-4	1	INTRON ctrip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	9555733	3R_9555733_SNP [dm3] 3R_13730011_SNP [dm6]	A	T	2.249e^-4	1	INTRON CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15779566	2R_15779566_SNP [dm3] 2R_19892061_SNP [dm6]	A	T	2.253e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	12338756	2R_12338756_SNP [dm3] 2R_16451251_SNP [dm6]	T	G	2.262e^-4	1	INTERGENIC
2L	20293783	2L_20293783_SNP [dm3] 2L_20293783_SNP [dm6]	A	G	2.264e^-4	1	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
X	7475271	X_7475271_SNP [dm3] X_7581238_SNP [dm6]	G	A	2.271e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	5545286	3L_5545286_SNP [dm3] 3L_5552186_SNP [dm6]	C	T	2.294e^-4	1	INTERGENIC
3R	15629862	3R_15629862_SNP [dm3] 3R_19804140_SNP [dm6]	C	A	2.300e^-4	1	INTRON bnl	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10707204	2L_10707204_SNP [dm3] 2L_10707204_SNP [dm6]	A	C	2.302e^-4	1	INTRON Lip2	TF binding site mE1_TFBS_inv
2L	9757687	2L_9757687_SNP [dm3] 2L_9757687_SNP [dm6]	T	C	2.302e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
2R	9466884	2R_9466884_SNP [dm3] 2R_13579379_SNP [dm6]	A	T	2.313e^-4	1	DOWNSTREAM CG6191 EXON CR44366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	9899470	3R_9899470_SNP [dm3] 3R_14073748_SNP [dm6]	G	T	2.318e^-4	1	INTRON foxo
3R	26950580	3R_26950580_SNP [dm3] 3R_31124858_SNP [dm6]	A	T	2.330e^-4	1	INTERGENIC
3L	15634936	3L_15634936_SNP [dm3] 3L_15641836_SNP [dm6]	A	T	2.349e^-4	1	INTRON comm3
2L	9757696	2L_9757696_SNP [dm3] 2L_9757696_SNP [dm6]	T	G	2.352e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
2R	18876956	2R_18876956_SNP [dm3] 2R_22989433_SNP [dm6]	C	A	2.352e^-4	1	INTRON twi
2R	17355404	2R_17355404_INS [dm3] 2R_21467899_INS [dm6]	T	TTCCCAAAAAT...	2.355e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	629594	3R_629594_INS [dm3] 3R_4803872_INS [dm6]	A	ATACATACAAATAAACCGTC...	2.357e^-4	1	INTRON ctrip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	10695066	3L_10695066_SNP [dm3] 3L_10701966_SNP [dm6]	A	T	2.358e^-4	1	INTERGENIC
X	14726352	X_14726352_SNP [dm3] X_14832319_SNP [dm6]	A	G	2.361e^-4	1	UPSTREAM CG14411 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
3R	14309720	3R_14309720_SNP [dm3] 3R_18483998_SNP [dm6]	C	A	2.382e^-4	1	INTRON fru
3R	25532835	3R_25532835_SNP [dm3] 3R_29707113_SNP [dm6]	T	A	2.384e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5992240	X_5992240_SNP [dm3] X_6098207_SNP [dm6]	C	A	2.389e^-4	1	INTRON Nep1	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	12765387	2R_12765387_SNP [dm3] 2R_16877882_SNP [dm6]	A	G	2.391e^-4	1	SYNONYMOUS_CODING CG8910	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15881902	2L_15881902_SNP [dm3] 2L_15881902_SNP [dm6]	A	G	2.392e^-4	1	DOWNSTREAM CG44475 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	13306939	3L_13306939_SNP [dm3] 3L_13313839_SNP [dm6]	T	A	2.395e^-4	1	INTERGENIC
3L	5932666	3L_5932666_INS [dm3] 3L_5939566_INS [dm6]	A	AATGAACA	2.397e^-4	1	INTRON CG33993
3L	13741048	3L_13741048_SNP [dm3] 3L_13747948_SNP [dm6]	A	T	2.415e^-4	1	INTRON bru-3
3R	25722128	3R_25722128_SNP [dm3] 3R_29896406_SNP [dm6]	A	G	2.426e^-4	1	INTRON CG31038	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2693939	2L_2693939_SNP [dm3] 2L_2693939_SNP [dm6]	T	C	2.441e^-4	1	INTRON CG31690
3L	10695068	3L_10695068_SNP [dm3] 3L_10701968_SNP [dm6]	A	G	2.453e^-4	1	INTERGENIC
2L	13639579	2L_13639579_SNP [dm3] 2L_13639579_SNP [dm6]	T	A	2.461e^-4	1	UTR_3_PRIME ics DOWNSTREAM kuz	TF binding site mE1_TFBS_HSA
2R	17602577	2R_17602577_SNP [dm3] 2R_21715072_SNP [dm6]	A	G	2.465e^-4	1	INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	3169411	3R_3169411_SNP [dm3] 3R_7343689_SNP [dm6]	A	C	2.468e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cnc
X	10215065	X_10215065_SNP [dm3] X_10321032_SNP [dm6]	C	A	2.470e^-4	1	INTRON alpha-Man-I
2R	11033845	2R_11033845_SNP [dm3] 2R_15146340_SNP [dm6]	G	A	2.473e^-4	1	SYNONYMOUS_CODING CG8089 UPSTREAM Rpb12	TF binding site mE1_TFBS_sens
3R	13300339	3R_13300339_SNP [dm3] 3R_17474617_SNP [dm6]	T	C	2.487e^-4	1	UTR_3_PRIME Dscam3
3L	8679532	3L_8679532_SNP [dm3] 3L_8686432_SNP [dm6]	C	T	2.494e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19893406	3R_19893406_SNP [dm3] 3R_24067684_SNP [dm6]	G	T	2.497e^-4	1	UTR_3_PRIME 4EHP INTRON 4EHP
2L	14458281	2L_14458281_SNP [dm3] 2L_14458281_SNP [dm6]	G	A	2.500e^-4	1	DOWNSTREAM CR44730 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7095339	2L_7095339_SNP [dm3] 2L_7095339_SNP [dm6]	A	C	2.502e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12619796	3L_12619796_SNP [dm3] 3L_12626696_SNP [dm6]	A	C	2.504e^-4	1	INTERGENIC
2L	20468256	2L_20468256_INS [dm3] 2L_20468256_INS [dm6]	C	AA	2.508e^-4	1	INTRON CR44980	transposable element FlyBase
3R	5076909	3R_5076909_SNP [dm3] 3R_9251187_SNP [dm6]	A	C	2.511e^-4	1	UPSTREAM St2 INTRON CG8420
2L	9757824	2L_9757824_SNP [dm3] 2L_9757824_SNP [dm6]	C	T	2.513e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3R	26480928	3R_26480928_SNP [dm3] 3R_30655206_SNP [dm6]	G	A	2.518e^-4	1	INTERGENIC
2R	18449571	2R_18449571_SNP [dm3] 2R_22562066_SNP [dm6]	A	C	2.522e^-4	1	UPSTREAM CG11362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16178773	2L_16178773_SNP [dm3] 2L_16178773_SNP [dm6]	C	T	2.555e^-4	1	INTRON Ca-alpha1D EXON CR43806
3R	10410458	3R_10410458_SNP [dm3] 3R_14584736_SNP [dm6]	T	G	2.557e^-4	1	INTRON stumps
2R	4521414	2R_4521414_SNP [dm3] 2R_8633909_SNP [dm6]	T	A	2.561e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20474980	2L_20474980_INS [dm3] 2L_20474980_INS [dm6]	G	GG	2.563e^-4	1	INTRON CR44980
2L	2845605	2L_2845605_SNP [dm3] 2L_2845605_SNP [dm6]	G	A	2.563e^-4	1	NON_SYNONYMOUS_CODING CG18557 DOWNSTREAM CG3117
X	11097319	X_11097319_DEL [dm3] X_11203286_DEL [dm6]	ACGGTA	A	2.565e^-4	1	DOWNSTREAM CG11106 INTERGENIC
3R	26427813	3R_26427813_SNP [dm3] 3R_30602091_SNP [dm6]	T	A	2.570e^-4	1	UPSTREAM CG31021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
2R	18450232	2R_18450232_SNP [dm3] 2R_22562727_SNP [dm6]	A	T	2.574e^-4	1	NON_SYNONYMOUS_CODING CG11362 UPSTREAM px DOWNSTREAM dnr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13349680	X_13349680_SNP [dm3] X_13455647_SNP [dm6]	A	C	2.588e^-4	1	DOWNSTREAM CG34324 INTRON Neto
3L	10723358	3L_10723358_SNP [dm3] 3L_10730258_SNP [dm6]	C	A	2.589e^-4	1	INTERGENIC
3L	19481945	3L_19481945_SNP [dm3] 3L_19488845_SNP [dm6]	C	G	2.611e^-4	1	UPSTREAM pncr009:3L DOWNSTREAM CG32212 INTERGENIC	transposable element FlyBase
3R	14319630	3R_14319630_SNP [dm3] 3R_18493908_SNP [dm6]	T	A	2.614e^-4	1	INTRON fru
2L	6656843	2L_6656843_SNP [dm3] 2L_6656843_SNP [dm6]	G	T	2.619e^-4	1	NON_SYNONYMOUS_CODING CG31636 UPSTREAM CG31633	TF binding site mE1_TFBS_chinmo
2L	9744582	2L_9744582_SNP [dm3] 2L_9744582_SNP [dm6]	A	G	2.622e^-4	1	INTRON Nckx30C
2R	16651923	2R_16651923_SNP [dm3] 2R_20764418_SNP [dm6]	C	A	2.636e^-4	1	INTERGENIC
3R	24176035	3R_24176035_SNP [dm3] 3R_28350313_SNP [dm6]	C	G	2.641e^-4	1	INTERGENIC
3L	12847286	3L_12847286_SNP [dm3] 3L_12854186_SNP [dm6]	T	C	2.642e^-4	1	SYNONYMOUS_CODING Ent3
X	4908544	X_4908544_SNP [dm3] X_5014511_SNP [dm6]	A	G	2.646e^-4	1	INTRON CR44833
3R	16694836	3R_16694836_SNP [dm3] 3R_20869114_SNP [dm6]	A	C	2.648e^-4	1	INTERGENIC
2R	7399933	2R_7399933_SNP [dm3] 2R_11512428_SNP [dm6]	C	A	2.649e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15251659	2R_15251659_DEL [dm3] 2R_19364154_DEL [dm6]	CC	C	2.654e^-4	1	INTRON CG10051	TF binding site mE1_TFBS_cad
3R	14426155	3R_14426155_SNP [dm3] 3R_18600433_SNP [dm6]	A	T	2.673e^-4	1	DOWNSTREAM CG14305 INTRON qin & 1 other
2L	9745583	2L_9745583_SNP [dm3] 2L_9745583_SNP [dm6]	A	G	2.673e^-4	1	INTRON Nckx30C
2R	741411	2R_741411_SNP [dm3] 2R_4853906_SNP [dm6]	G	A	2.683e^-4	1	INTERGENIC
3R	27231355	3R_27231355_SNP [dm3] 3R_31405633_SNP [dm6]	A	C	2.694e^-4	1	UTR_5_PRIME Gprk2 UPSTREAM CG11337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13895323	3L_13895323_SNP [dm3] 3L_13902223_SNP [dm6]	C	G	2.694e^-4	1	UTR_5_PRIME dysc
2R	4521305	2R_4521305_SNP [dm3] 2R_8633800_SNP [dm6]	A	T	2.694e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15544342	3R_15544342_SNP [dm3] 3R_19718620_SNP [dm6]	C	T	2.700e^-4	1	INTERGENIC
3R	26783216	3R_26783216_SNP [dm3] 3R_30957494_SNP [dm6]	G	C	2.701e^-4	1	INTERGENIC
3R	3754069	3R_3754069_SNP [dm3] 3R_7928347_SNP [dm6]	T	C	2.717e^-4	1	INTRON dsx	TF binding site mE1_TFBS_cad
X	6265529	X_6265529_DEL [dm3] X_6371496_DEL [dm6]	AT	A	2.727e^-4	1	UTR_3_PRIME PpV UPSTREAM CR44816 DOWNSTREAM Marf
2L	19134076	2L_19134076_SNP [dm3] 2L_19134076_SNP [dm6]	G	C	2.731e^-4	1	UTR_5_PRIME brat UPSTREAM l_2_37Cg DOWNSTREAM l_2_37Ce INTRON l_2_37Cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	19132183	2L_19132183_SNP [dm3] 2L_19132183_SNP [dm6]	T	A	2.734e^-4	1	UPSTREAM l_2_37Ce & 1 other DOWNSTREAM l_2_37Cg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	8746352	3L_8746352_SNP [dm3] 3L_8753252_SNP [dm6]	T	C	2.735e^-4	1	UPSTREAM Fhos INTERGENIC
3R	21989095	3R_21989095_SNP [dm3] 3R_26163373_SNP [dm6]	A	G	2.742e^-4	1	INTERGENIC
3L	1296894	3L_1296894_SNP [dm3] 3L_1296894_SNP [dm6]	T	C	2.748e^-4	1	INTRON Rabex-5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17930450	2R_17930450_SNP [dm3] 2R_22042945_SNP [dm6]	C	T	2.748e^-4	1	UTR_5_PRIME PpD5
3R	9614191	3R_9614191_SNP [dm3] 3R_13788469_SNP [dm6]	T	G	2.750e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8854994	2R_8854994_SNP [dm3] 2R_12967489_SNP [dm6]	G	C	2.755e^-4	1	NON_SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24466008	3R_24466008_SNP [dm3] 3R_28640286_SNP [dm6]	T	C	2.780e^-4	1	INTERGENIC
2R	18199945	2R_18199945_SNP [dm3] 2R_22312440_SNP [dm6]	C	G	2.783e^-4	1	UPSTREAM CR44758 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18569084	3L_18569084_SNP [dm3] 3L_18575984_SNP [dm6]	C	T	2.803e^-4	1	UTR_3_PRIME AstC-R1
3R	21989147	3R_21989147_SNP [dm3] 3R_26163425_SNP [dm6]	T	C	2.810e^-4	1	INTERGENIC
3R	15371854	3R_15371854_SNP [dm3] 3R_19546132_SNP [dm6]	G	T	2.828e^-4	1	INTRON Dys	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	20530287	X_20530287_SNP [dm3] X_20659260_SNP [dm6]	G	A	2.831e^-4	1	INTRON Cyp6v1
2L	20295000	2L_20295000_SNP [dm3] 2L_20295000_SNP [dm6]	T	C	2.834e^-4	1	NON_SYNONYMOUS_CODING CG12617
2R	4738336	2R_4738336_SNP [dm3] 2R_8850831_SNP [dm6]	G	A	2.835e^-4	1	INTRON sns	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10443733	3L_10443733_SNP [dm3] 3L_10450633_SNP [dm6]	A	G	2.842e^-4	1	INTERGENIC
2L	7095375	2L_7095375_DEL [dm3] 2L_7095375_DEL [dm6]	GG	G	2.847e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4860892	X_4860892_SNP [dm3] X_4966859_SNP [dm6]	A	G	2.847e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs
3R	24779844	3R_24779844_SNP [dm3] 3R_28954122_SNP [dm6]	C	T	2.862e^-4	1	INTRON CG14521
3R	14146654	3R_14146654_SNP [dm3] 3R_18320932_SNP [dm6]	G	C	2.862e^-4	1	INTRON CG31235
2R	3812581	2R_3812581_SNP [dm3] 2R_7925076_SNP [dm6]	A	G	2.864e^-4	1	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	12860496	3R_12860496_SNP [dm3] 3R_17034774_SNP [dm6]	A	T	2.867e^-4	1	INTRON CG4009	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9514114	2R_9514114_SNP [dm3] 2R_13626609_SNP [dm6]	C	G	2.872e^-4	1	INTRON fas
2R	14558851	2R_14558851_SNP [dm3] 2R_18671346_SNP [dm6]	A	G	2.880e^-4	1	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10410563	3R_10410563_SNP [dm3] 3R_14584841_SNP [dm6]	C	T	2.907e^-4	1	INTRON stumps
2L	10353299	2L_10353299_SNP [dm3] 2L_10353299_SNP [dm6]	C	G	2.916e^-4	1	SYNONYMOUS_CODING CG34367	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	4860878	X_4860878_SNP [dm3] X_4966845_SNP [dm6]	C	T	2.929e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs
2L	12610920	2L_12610920_SNP [dm3] 2L_12610920_SNP [dm6]	T	G	2.933e^-4	1	NON_SYNONYMOUS_CODING Ref2 INTRON nub	TF binding site mE1_TFBS_sens
2R	4075196	2R_4075196_SNP [dm3] 2R_8187691_SNP [dm6]	A	G	2.951e^-4	1	INTRON LRP1
3L	7828103	3L_7828103_SNP [dm3] 3L_7835003_SNP [dm6]	C	T	2.960e^-4	1	INTRON Pdp1
3R	3763240	3R_3763240_SNP [dm3] 3R_7937518_SNP [dm6]	C	T	2.967e^-4	1	INTRON dsx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14223509	3L_14223509_SNP [dm3] 3L_14230409_SNP [dm6]	C	G	2.977e^-4	1	INTRON nuf
3R	13300327	3R_13300327_SNP [dm3] 3R_17474605_SNP [dm6]	G	A	2.985e^-4	1	UTR_3_PRIME Dscam3
3R	16031533	3R_16031533_SNP [dm3] 3R_20205811_SNP [dm6]	A	T	2.988e^-4	1	INTRON Nlg4
3L	3594260	3L_3594260_SNP [dm3] 3L_3594260_SNP [dm6]	G	A	2.995e^-4	1	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site mE1_TFBS_HSA
2R	11033929	2R_11033929_SNP [dm3] 2R_15146424_SNP [dm6]	G	A	3.000e^-4	1	SYNONYMOUS_CODING CG8089 UPSTREAM Rpb12	TF binding site mE1_TFBS_sens
X	17816050	X_17816050_SNP [dm3] X_17922017_SNP [dm6]	A	C	3.012e^-4	1	SYNONYMOUS_CODING CG6847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8753811	3L_8753811_SNP [dm3] 3L_8760711_SNP [dm6]	T	A	3.035e^-4	1	SYNONYMOUS_CODING Fhos UPSTREAM Fhos
2R	17450616	2R_17450616_SNP [dm3] 2R_21563111_SNP [dm6]	T	G	3.037e^-4	1	INTRON CG10440
2L	9746238	2L_9746238_SNP [dm3] 2L_9746238_SNP [dm6]	C	T	3.046e^-4	1	INTRON Nckx30C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3875534	3R_3875534_SNP [dm3] 3R_8049812_SNP [dm6]	T	G	3.060e^-4	1	DOWNSTREAM CG43618 INTRON CG43060 & 1 other
2R	7260447	2R_7260447_SNP [dm3] 2R_11372942_SNP [dm6]	T	C	3.063e^-4	1	UPSTREAM CG13203 INTERGENIC
2R	16003019	2R_16003019_SNP [dm3] 2R_20115514_SNP [dm6]	C	T	3.078e^-4	1	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19274668	2R_19274668_SNP [dm3] 2R_23387145_SNP [dm6]	G	A	3.081e^-4	1	NON_SYNONYMOUS_CODING eIF2B-delta UPSTREAM CG30415	TF binding site mE1_TFBS_HSA
2R	12794476	2R_12794476_SNP [dm3] 2R_16906971_SNP [dm6]	C	T	3.090e^-4	1	INTERGENIC
3R	3187737	3R_3187737_SNP [dm3] 3R_7362015_SNP [dm6]	C	T	3.111e^-4	1	NON_SYNONYMOUS_CODING CG17944
2L	9843594	2L_9843594_SNP [dm3] 2L_9843594_SNP [dm6]	G	A	3.127e^-4	1	INTRON nAChRalpha6
X	8128134	X_8128134_SNP [dm3] X_8234101_SNP [dm6]	T	G	3.127e^-4	1	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	3149365	3R_3149365_SNP [dm3] 3R_7323643_SNP [dm6]	C	A	3.138e^-4	1	INTERGENIC
2L	12078825	2L_12078825_SNP [dm3] 2L_12078825_SNP [dm6]	C	T	3.154e^-4	1	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
2R	16713488	2R_16713488_SNP [dm3] 2R_20825983_SNP [dm6]	A	G	3.177e^-4	1	INTRON insc	TF binding site mE1_TFBS_cad
2R	16713490	2R_16713490_SNP [dm3] 2R_20825985_SNP [dm6]	A	T	3.177e^-4	1	INTRON insc	TF binding site mE1_TFBS_cad
2R	18753633	2R_18753633_SNP [dm3] 2R_22866110_SNP [dm6]	G	A	3.182e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20479533	2L_20479533_SNP [dm3] 2L_20479533_SNP [dm6]	C	T	3.182e^-4	1	UPSTREAM CR43234 INTRON CR44980
X	2244201	X_2244201_SNP [dm3] X_2350168_SNP [dm6]	C	A	3.195e^-4	1	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2292874	3L_2292874_SNP [dm3] 3L_2292874_SNP [dm6]	A	G	3.195e^-4	1	INTRON MsR2
3L	1007634	3L_1007634_SNP [dm3] 3L_1007634_SNP [dm6]	C	T	3.195e^-4	1	NON_SYNONYMOUS_CODING trio INTRON trio	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16087619	X_16087619_SNP [dm3] X_16193586_SNP [dm6]	T	C	3.199e^-4	1	INTERGENIC
3R	26054848	3R_26054848_SNP [dm3] 3R_30229126_SNP [dm6]	C	G	3.206e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	18725003	2R_18725003_SNP [dm3] 2R_22837480_SNP [dm6]	G	A	3.213e^-4	1	DOWNSTREAM CG12490 INTRON CG9825
3L	18569087	3L_18569087_SNP [dm3] 3L_18575987_SNP [dm6]	C	T	3.224e^-4	1	UTR_3_PRIME AstC-R1
3L	1591567	3L_1591567_SNP [dm3] 3L_1591567_SNP [dm6]	T	A	3.226e^-4	1	INTRON CG13917
2L	19045936	2L_19045936_SNP [dm3] 2L_19045936_SNP [dm6]	G	A	3.226e^-4	1	NON_SYNONYMOUS_CODING Acn UPSTREAM Ttc19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2R	6691349	2R_6691349_SNP [dm3] 2R_10803844_SNP [dm6]	A	T	3.241e^-4	1	NON_SYNONYMOUS_CODING wde	TF binding site BDTNP1_TFBS_twi
2R	20079974	2R_20079974_SNP [dm3] 2R_24192451_SNP [dm6]	C	T	3.242e^-4	1	SYNONYMOUS_CODING ocm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12872555	2R_12872555_SNP [dm3] 2R_16985050_SNP [dm6]	A	G	3.243e^-4	1	INTRON Cbp53E
3R	3164632	3R_3164632_SNP [dm3] 3R_7338910_SNP [dm6]	G	T	3.246e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2467333	3R_2467333_SNP [dm3] 3R_6641611_SNP [dm6]	G	A	3.268e^-4	1	DOWNSTREAM CG1315 INTRON CG31286	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9758359	2L_9758359_SNP [dm3] 2L_9758359_SNP [dm6]	G	A	3.268e^-4	1	UTR_5_PRIME zf30C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	702995	2R_702995_SNP [dm3] 2R_4815490_SNP [dm6]	T	G	3.268e^-4	1	UTR_3_PRIME CG17528
X	16788492	X_16788492_SNP [dm3] X_16894459_SNP [dm6]	G	T	3.272e^-4	1	INTERGENIC
X	16515861	X_16515861_SNP [dm3] X_16621828_SNP [dm6]	G	A	3.276e^-4	1	UPSTREAM CG9782 INTERGENIC
3R	3706430	3R_3706430_SNP [dm3] 3R_7880708_SNP [dm6]	G	A	3.278e^-4	1	INTRON CG17816
3R	20339495	3R_20339495_SNP [dm3] 3R_24513773_SNP [dm6]	A	G	3.287e^-4	1	SYNONYMOUS_CODING nAChRbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3R	27392009	3R_27392009_SNP [dm3] 3R_31566287_SNP [dm6]	T	A	3.290e^-4	1	DOWNSTREAM nyo INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11817987	2R_11817987_SNP [dm3] 2R_15930482_SNP [dm6]	A	T	3.297e^-4	1	INTRON bdg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	8730513	3L_8730513_SNP [dm3] 3L_8737413_SNP [dm6]	A	C	3.298e^-4	1	SYNONYMOUS_CODING Prm INTRON Prm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10406508	3L_10406508_SNP [dm3] 3L_10413408_SNP [dm6]	T	C	3.326e^-4	1	SYNONYMOUS_CODING CG12362	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12181209	X_12181209_SNP [dm3] X_12287176_SNP [dm6]	A	T	3.331e^-4	1	INTRON Ten-a
2L	5864762	2L_5864762_SNP [dm3] 2L_5864762_SNP [dm6]	G	A	3.332e^-4	1	INTRON rau	TF binding site BDTNP1_TFBS_twi
3R	10410547	3R_10410547_SNP [dm3] 3R_14584825_SNP [dm6]	T	C	3.333e^-4	1	INTRON stumps
2R	18536112	2R_18536112_SNP [dm3] 2R_22648607_SNP [dm6]	T	C	3.334e^-4	1	UPSTREAM CG34446 & 1 other DOWNSTREAM CG3746 INTERGENIC
2L	7016912	2L_7016912_SNP [dm3] 2L_7016912_SNP [dm6]	T	C	3.340e^-4	1	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
3L	20442340	3L_20442340_SNP [dm3] 3L_20449240_SNP [dm6]	T	A	3.355e^-4	1	INTRON CG5910
2L	10909218	2L_10909218_SNP [dm3] 2L_10909218_SNP [dm6]	T	A	3.356e^-4	1	UPSTREAM CG7309 DOWNSTREAM CG14069 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11267228	2L_11267228_SNP [dm3] 2L_11267228_SNP [dm6]	A	G	3.357e^-4	1	SYNONYMOUS_CODING cmet	TF binding site mE1_TFBS_sens
2R	7456440	2R_7456440_SNP [dm3] 2R_11568935_SNP [dm6]	G	C	3.362e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	9305480	X_9305480_INS [dm3] X_9411447_INS [dm6]	T	TTGGGAGGG	3.362e^-4	1	INTRON mgl
2R	12336293	2R_12336293_SNP [dm3] 2R_16448788_SNP [dm6]	G	T	3.368e^-4	1	INTERGENIC
2L	3372460	2L_3372460_SNP [dm3] 2L_3372460_SNP [dm6]	C	T	3.370e^-4	1	INTRON CG34394	TF binding site mE1_TFBS_D
3R	14146695	3R_14146695_SNP [dm3] 3R_18320973_SNP [dm6]	A	G	3.374e^-4	1	INTRON CG31235
3R	9162413	3R_9162413_SNP [dm3] 3R_13336691_SNP [dm6]	G	A	3.381e^-4	1	INTERGENIC
2R	17484158	2R_17484158_SNP [dm3] 2R_21596653_SNP [dm6]	G	C	3.386e^-4	1	INTERGENIC
2L	17232271	2L_17232271_SNP [dm3] 2L_17232271_SNP [dm6]	T	A	3.396e^-4	1	INTRON beat-IIIc
2R	19384679	2R_19384679_SNP [dm3] 2R_23497156_SNP [dm6]	T	C	3.399e^-4	1	INTERGENIC
2R	19310215	2R_19310215_SNP [dm3] 2R_23422692_SNP [dm6]	G	A	3.403e^-4	1	START_GAINED CG9815 UTR_5_PRIME CG9815 INTRON CG9815
3R	3731031	3R_3731031_SNP [dm3] 3R_7905309_SNP [dm6]	G	A	3.404e^-4	1	SYNONYMOUS_CODING CG2943	TF binding site mE1_TFBS_cad
3R	3162156	3R_3162156_SNP [dm3] 3R_7336434_SNP [dm6]	A	G	3.406e^-4	1	INTERGENIC
2R	12339592	2R_12339592_SNP [dm3] 2R_16452087_SNP [dm6]	C	T	3.409e^-4	1	INTERGENIC
3R	3147477	3R_3147477_SNP [dm3] 3R_7321755_SNP [dm6]	C	T	3.409e^-4	1	INTERGENIC
X	14728129	X_14728129_SNP [dm3] X_14834096_SNP [dm6]	A	G	3.416e^-4	1	SYNONYMOUS_CODING CG14411	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19832867	2R_19832867_SNP [dm3] 2R_23945344_SNP [dm6]	A	G	3.419e^-4	1	INTRON Galphas	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7165954	3L_7165954_SNP [dm3] 3L_7172854_SNP [dm6]	T	C	3.424e^-4	1	INTRON Dscam2
3L	7165956	3L_7165956_INS [dm3] 3L_7172856_INS [dm6]	T	CCTTCAGC	3.424e^-4	1	INTRON Dscam2
3R	17487997	3R_17487997_MNP [dm3] 3R_21662275_MNP [dm6]	GTC	TAT	3.425e^-4	1	INTRON CG6353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18665062	2R_18665062_SNP [dm3] 2R_22777557_SNP [dm6]	G	A	3.430e^-4	1	INTRON CG42260
X	16750651	X_16750651_SNP [dm3] X_16856618_SNP [dm6]	C	T	3.439e^-4	1	INTRON CG13003	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	3763424	3R_3763424_DEL [dm3] 3R_7937702_DEL [dm6]	TAACAGCGTT	T	3.449e^-4	1	INTRON dsx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15295647	3L_15295647_SNP [dm3] 3L_15302547_SNP [dm6]	G	A	3.451e^-4	1	SYNONYMOUS_CODING Best3
3L	366369	3L_366369_SNP [dm3] 3L_366369_SNP [dm6]	G	T	3.455e^-4	1	UTR_5_PRIME CG13884 DOWNSTREAM trh & 1 other	TF binding site mE1_TFBS_cad
3L	13307243	3L_13307243_SNP [dm3] 3L_13314143_SNP [dm6]	C	A	3.457e^-4	1	INTERGENIC
X	8723018	X_8723018_INS [dm3] X_8828985_INS [dm6]	G	GG	3.476e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25529635	3R_25529635_SNP [dm3] 3R_29703913_SNP [dm6]	G	A	3.488e^-4	1	INTERGENIC
3L	9002320	3L_9002320_SNP [dm3] 3L_9009220_SNP [dm6]	C	T	3.496e^-4	1	NON_SYNONYMOUS_CODING CG5194	TF binding site mE1_TFBS_cad
2L	10706984	2L_10706984_SNP [dm3] 2L_10706984_SNP [dm6]	A	T	3.497e^-4	1	UPSTREAM Lip2 INTRON Lip2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	27231677	3R_27231677_SNP [dm3] 3R_31405955_SNP [dm6]	A	G	3.499e^-4	1	SPLICE_SITE_REGION Gprk2 UTR_5_PRIME Gprk2 UPSTREAM CG11337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	13513083	3R_13513083_DEL [dm3] 3R_17687361_DEL [dm6]	AT	A	3.508e^-4	1	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3R	2648879	3R_2648879_SNP [dm3] 3R_6823157_SNP [dm6]	A	G	3.519e^-4	1	UTR_3_PRIME Scr UPSTREAM tRNA:K5:84ABa DOWNSTREAM 7SLRNA:CR32864	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3195560	3R_3195560_SNP [dm3] 3R_7369838_SNP [dm6]	C	A	3.520e^-4	1	UPSTREAM MstProx INTERGENIC
2L	7095331	2L_7095331_SNP [dm3] 2L_7095331_SNP [dm6]	C	T	3.530e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	3157472	3R_3157472_SNP [dm3] 3R_7331750_SNP [dm6]	C	T	3.537e^-4	1	EXON CR44337
2L	1882929	2L_1882929_SNP [dm3] 2L_1882929_SNP [dm6]	G	A	3.538e^-4	1	NON_SYNONYMOUS_CODING CG15358
2R	12338768	2R_12338768_SNP [dm3] 2R_16451263_SNP [dm6]	A	T	3.539e^-4	1	INTERGENIC
2L	15949393	2L_15949393_DEL [dm3] 2L_15949393_DEL [dm6]	ATAGTTTCA	A	3.539e^-4	1	INTRON beat-Ib
2R	18449570	2R_18449570_SNP [dm3] 2R_22562065_SNP [dm6]	C	G	3.540e^-4	1	UTR_5_PRIME px UPSTREAM CG11362	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8163215	3R_8163215_SNP [dm3] 3R_12337493_SNP [dm6]	G	A	3.544e^-4	1	INTRON CR44941
3L	834598	3L_834598_SNP [dm3] 3L_834598_SNP [dm6]	G	A	3.565e^-4	1	SYNONYMOUS_CODING CG42553	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	21124969	3R_21124969_SNP [dm3] 3R_25299247_SNP [dm6]	G	T	3.571e^-4	1	INTRON CG31288
3L	12847253	3L_12847253_SNP [dm3] 3L_12854153_SNP [dm6]	A	G	3.577e^-4	1	SYNONYMOUS_CODING Ent3 DOWNSTREAM Wbp2
2R	15244958	2R_15244958_SNP [dm3] 2R_19357453_SNP [dm6]	G	A	3.582e^-4	1	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17462755	X_17462755_SNP [dm3] X_17568722_SNP [dm6]	T	C	3.595e^-4	1	INTRON ppk23
X	13777056	X_13777056_SNP [dm3] X_13883023_SNP [dm6]	G	A	3.616e^-4	1	UTR_3_PRIME mamo INTRON mamo
2R	12338753	2R_12338753_SNP [dm3] 2R_16451248_SNP [dm6]	T	A	3.620e^-4	1	INTERGENIC
2L	9757578	2L_9757578_SNP [dm3] 2L_9757578_SNP [dm6]	G	A	3.621e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_run
2R	6698575	2R_6698575_SNP [dm3] 2R_10811070_SNP [dm6]	T	G	3.622e^-4	1	UPSTREAM mms4 & 1 other DOWNSTREAM CG12935 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	6475575	X_6475575_SNP [dm3] X_6581542_SNP [dm6]	G	T	3.623e^-4	1	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo
3R	15371884	3R_15371884_SNP [dm3] 3R_19546162_SNP [dm6]	T	C	3.627e^-4	1	INTRON Dys	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	15634921	3L_15634921_SNP [dm3] 3L_15641821_SNP [dm6]	A	G	3.632e^-4	1	INTRON comm3
2L	20290169	2L_20290169_SNP [dm3] 2L_20290169_SNP [dm6]	G	C	3.647e^-4	1	INTERGENIC
2L	9758115	2L_9758115_SNP [dm3] 2L_9758115_SNP [dm6]	G	A	3.648e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	11741264	X_11741264_SNP [dm3] X_11847231_SNP [dm6]	T	C	3.655e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	13788566	2L_13788566_SNP [dm3] 2L_13788566_SNP [dm6]	C	T	3.669e^-4	1	SYNONYMOUS_CODING CG31731	TF binding site mE1_TFBS_sens
3R	12219974	3R_12219974_SNP [dm3] 3R_16394252_SNP [dm6]	T	G	3.670e^-4	1	INTRON ss	regulatory region REDfly_CRMs
2L	19029570	2L_19029570_SNP [dm3] 2L_19029570_SNP [dm6]	C	G	3.678e^-4	1	NON_SYNONYMOUS_CODING Side	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16717088	3R_16717088_SNP [dm3] 3R_20891366_SNP [dm6]	T	A	3.686e^-4	1	UPSTREAM tRNA:CR31333 DOWNSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20573459	X_20573459_SNP [dm3] X_20702432_SNP [dm6]	T	C	3.688e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	12860446	3R_12860446_SNP [dm3] 3R_17034724_SNP [dm6]	C	T	3.693e^-4	1	SYNONYMOUS_CODING CG4009	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15634810	3L_15634810_SNP [dm3] 3L_15641710_SNP [dm6]	T	G	3.694e^-4	1	INTRON comm3
2R	14797237	2R_14797237_SNP [dm3] 2R_18909732_SNP [dm6]	A	G	3.696e^-4	1	SYNONYMOUS_CODING Vha100-3 INTRON sano	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13513066	3R_13513066_SNP [dm3] 3R_17687344_SNP [dm6]	G	T	3.696e^-4	1	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3L	11903598	3L_11903598_SNP [dm3] 3L_11910498_SNP [dm6]	G	T	3.710e^-4	1	INTRON CG44837
3L	10443716	3L_10443716_SNP [dm3] 3L_10450616_SNP [dm6]	G	A	3.711e^-4	1	INTERGENIC
3R	21017310	3R_21017310_SNP [dm3] 3R_25191588_SNP [dm6]	G	T	3.717e^-4	1	SYNONYMOUS_CODING dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7514615	3L_7514615_SNP [dm3] 3L_7521515_SNP [dm6]	T	G	3.733e^-4	1	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	17355310	2R_17355310_SNP [dm3] 2R_21467805_SNP [dm6]	T	A	3.734e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12908463	3R_12908463_SNP [dm3] 3R_17082741_SNP [dm6]	C	A	3.735e^-4	1	SYNONYMOUS_CODING kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	3933352	2R_3933352_SNP [dm3] 2R_8045847_SNP [dm6]	A	G	3.744e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	6697608	2R_6697608_SNP [dm3] 2R_10810103_SNP [dm6]	A	C	3.749e^-4	1	NON_SYNONYMOUS_CODING CG12935 UPSTREAM mms4 DOWNSTREAM CG7637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19434373	2R_19434373_SNP [dm3] 2R_23546850_SNP [dm6]	G	A	3.750e^-4	1	INTRON wmd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15786653	2R_15786653_SNP [dm3] 2R_19899148_SNP [dm6]	C	T	3.751e^-4	1	UPSTREAM CR44572 INTERGENIC
2R	8533160	2R_8533160_SNP [dm3] 2R_12645655_SNP [dm6]	G	A	3.756e^-4	1	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad
3R	20544233	3R_20544233_SNP [dm3] 3R_24718511_SNP [dm6]	T	C	3.760e^-4	1	SYNONYMOUS_CODING CG13630 DOWNSTREAM Rpb10	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18174256	2R_18174256_DEL [dm3] 2R_22286751_DEL [dm6]	CC	C	3.764e^-4	1	DOWNSTREAM dve INTERGENIC
3R	17947237	3R_17947237_SNP [dm3] 3R_22121515_SNP [dm6]	C	T	3.779e^-4	1	INTRON CG42390
3R	3700207	3R_3700207_SNP [dm3] 3R_7874485_SNP [dm6]	A	C	3.798e^-4	1	INTRON CG17816
3R	26798494	3R_26798494_SNP [dm3] 3R_30972772_SNP [dm6]	C	T	3.809e^-4	1	INTRON 5-HT7
2R	19384272	2R_19384272_SNP [dm3] 2R_23496749_SNP [dm6]	A	G	3.809e^-4	1	INTERGENIC
X	4376251	X_4376251_SNP [dm3] X_4482218_SNP [dm6]	C	T	3.817e^-4	1	SYNONYMOUS_CODING bi INTRON CR32773
2R	4206392	2R_4206392_SNP [dm3] 2R_8318887_SNP [dm6]	T	C	3.830e^-4	1	INTERGENIC
3R	16031483	3R_16031483_SNP [dm3] 3R_20205761_SNP [dm6]	T	G	3.846e^-4	1	INTRON Nlg4
2L	20392855	2L_20392855_SNP [dm3] 2L_20392855_SNP [dm6]	C	T	3.849e^-4	1	INTRON CG10947
2L	5447887	2L_5447887_SNP [dm3] 2L_5447887_SNP [dm6]	A	C	3.853e^-4	1	INTERGENIC
2L	14343579	2L_14343579_SNP [dm3] 2L_14343579_SNP [dm6]	G	A	3.858e^-4	1	SYNONYMOUS_CODING CG33090	TF binding site mE1_TFBS_cad
2L	16596750	2L_16596750_SNP [dm3] 2L_16596750_SNP [dm6]	T	C	3.870e^-4	1	INTRON CG42389
2L	2164902	2L_2164902_SNP [dm3] 2L_2164902_SNP [dm6]	G	A	3.878e^-4	1	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	16277677	3L_16277677_SNP [dm3] 3L_16284577_SNP [dm6]	C	T	3.884e^-4	1	UPSTREAM CG13048 DOWNSTREAM CG13047 INTERGENIC
3R	18681029	3R_18681029_SNP [dm3] 3R_22855307_SNP [dm6]	G	A	3.899e^-4	1	INTERGENIC
2R	4510590	2R_4510590_SNP [dm3] 2R_8623085_SNP [dm6]	T	C	3.899e^-4	1	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5634260	2R_5634260_SNP [dm3] 2R_9746755_SNP [dm6]	T	C	3.907e^-4	1	UTR_5_PRIME sqa
X	14729707	X_14729707_SNP [dm3] X_14835674_SNP [dm6]	C	T	3.913e^-4	1	SYNONYMOUS_CODING CG14411	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1973702	2L_1973702_DEL [dm3] 2L_1973702_DEL [dm6]	ATTGTA	A	3.913e^-4	1	UPSTREAM Der-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	3194816	3R_3194816_SNP [dm3] 3R_7369094_SNP [dm6]	T	C	3.916e^-4	1	NON_SYNONYMOUS_CODING MstProx
3R	3731827	3R_3731827_SNP [dm3] 3R_7906105_SNP [dm6]	T	A	3.916e^-4	1	SPLICE_SITE_REGION CG2943 INTRON CG2943	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13896718	3L_13896718_SNP [dm3] 3L_13903618_SNP [dm6]	T	A	3.925e^-4	1	UPSTREAM dysc INTERGENIC
X	6475698	X_6475698_SNP [dm3] X_6581665_SNP [dm6]	C	T	3.926e^-4	1	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9009438	X_9009438_SNP [dm3] X_9115405_SNP [dm6]	A	G	3.945e^-4	1	SYNONYMOUS_CODING AP-1gamma
X	2995364	X_2995364_SNP [dm3] X_3101331_SNP [dm6]	T	C	3.950e^-4	1	INTRON kirre
2R	8457393	2R_8457393_SNP [dm3] 2R_12569888_SNP [dm6]	G	A	3.959e^-4	1	UPSTREAM stil & 1 other DOWNSTREAM Cyp301a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	4860862	X_4860862_SNP [dm3] X_4966829_SNP [dm6]	T	C	3.960e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs
3L	1437688	3L_1437688_SNP [dm3] 3L_1437688_SNP [dm6]	C	T	3.961e^-4	1	UTR_5_PRIME SA-2 INTRON Ptp61F
2R	11773173	2R_11773173_SNP [dm3] 2R_15885668_SNP [dm6]	C	T	3.987e^-4	1	INTRON sli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	20339855	3R_20339855_SNP [dm3] 3R_24514133_SNP [dm6]	A	G	3.991e^-4	1	SYNONYMOUS_CODING nAChRbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	3198186	3R_3198186_SNP [dm3] 3R_7372464_SNP [dm6]	C	A	3.993e^-4	1	INTERGENIC
3R	3705980	3R_3705980_SNP [dm3] 3R_7880258_SNP [dm6]	C	T	4.000e^-4	1	INTRON CG17816
2R	12222178	2R_12222178_INS [dm3] 2R_16334673_INS [dm6]	A	TAT	4.000e^-4	1	UPSTREAM Vha44 INTRON Vha44
2L	1969957	2L_1969957_SNP [dm3] 2L_1969957_SNP [dm6]	G	T	4.003e^-4	1	UTR_5_PRIME erm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	5798606	3R_5798606_SNP [dm3] 3R_9972884_SNP [dm6]	T	C	4.005e^-4	1	INTRON Glut4EF
3L	8753805	3L_8753805_SNP [dm3] 3L_8760705_SNP [dm6]	G	A	4.036e^-4	1	SYNONYMOUS_CODING Fhos UPSTREAM Fhos
X	18998678	X_18998678_SNP [dm3] X_19104645_SNP [dm6]	G	A	4.039e^-4	1	INTERGENIC
2L	9746231	2L_9746231_SNP [dm3] 2L_9746231_SNP [dm6]	C	T	4.041e^-4	1	INTRON Nckx30C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24087944	3R_24087944_SNP [dm3] 3R_28262222_SNP [dm6]	T	C	4.054e^-4	1	DOWNSTREAM CG43125 INTERGENIC
2R	17145100	2R_17145100_SNP [dm3] 2R_21257595_SNP [dm6]	A	C	4.054e^-4	1	UTR_5_PRIME Rgk3 INTRON Rgk3
3L	8161896	3L_8161896_SNP [dm3] 3L_8168796_SNP [dm6]	G	A	4.054e^-4	1	INTERGENIC
2R	20509888	2R_20509888_DEL [dm3] 2R_24622365_DEL [dm6]	ATTTCCGCAGTTACTTGGCG...	A	4.057e^-4	1	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2R	17602483	2R_17602483_SNP [dm3] 2R_21714978_SNP [dm6]	C	G	4.059e^-4	1	INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	2264715	2L_2264715_SNP [dm3] 2L_2264715_SNP [dm6]	G	A	4.069e^-4	1	SPLICE_SITE_REGION CG34049 DOWNSTREAM CG4270 INTRON CG34049
3R	8869539	3R_8869539_SNP [dm3] 3R_13043817_SNP [dm6]	A	T	4.074e^-4	1	SYNONYMOUS_CODING CG11670 UPSTREAM CG45122 & 1 other
X	5967861	X_5967861_INS [dm3] X_6073828_INS [dm6]	A	ATCCTATAGATATCCTATGA...	4.074e^-4	1	UPSTREAM Tsp5D INTRON Tsp5D
2R	13564377	2R_13564377_SNP [dm3] 2R_17676872_SNP [dm6]	G	C	4.077e^-4	1	INTRON Sema-1b	TF binding site mE1_TFBS_cad
3R	27392029	3R_27392029_SNP [dm3] 3R_31566307_SNP [dm6]	A	G	4.084e^-4	1	DOWNSTREAM nyo INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18382462	3L_18382462_SNP [dm3] 3L_18389362_SNP [dm6]	A	T	4.091e^-4	1	INTERGENIC
2R	12222176	2R_12222176_SNP [dm3] 2R_16334671_SNP [dm6]	A	T	4.091e^-4	1	UPSTREAM Vha44 INTRON Vha44
3R	3279190	3R_3279190_SNP [dm3] 3R_7453468_SNP [dm6]	A	C	4.098e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	8408205	3L_8408205_SNP [dm3] 3L_8415105_SNP [dm6]	C	G	4.100e^-4	1	DOWNSTREAM CG32354 INTRON Exo70
3R	5798701	3R_5798701_SNP [dm3] 3R_9972979_SNP [dm6]	T	C	4.100e^-4	1	INTRON Glut4EF
X	7764475	X_7764475_SNP [dm3] X_7870442_SNP [dm6]	G	A	4.114e^-4	1	NON_SYNONYMOUS_CODING dec-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	9624074	3R_9624074_SNP [dm3] 3R_13798352_SNP [dm6]	C	T	4.117e^-4	1	UPSTREAM tRNA:CR31331 DOWNSTREAM tRNA:CR31588 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14146697	3R_14146697_SNP [dm3] 3R_18320975_SNP [dm6]	T	G	4.119e^-4	1	INTRON CG31235
2R	18753570	2R_18753570_DEL [dm3] 2R_22866047_DEL [dm6]	TGTTGTC	T	4.138e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10410551	3R_10410551_SNP [dm3] 3R_14584829_SNP [dm6]	A	G	4.141e^-4	1	INTRON stumps
2L	9757733	2L_9757733_SNP [dm3] 2L_9757733_SNP [dm6]	A	C	4.143e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
3R	23628844	3R_23628844_SNP [dm3] 3R_27803122_SNP [dm6]	G	A	4.143e^-4	1	INTRON CG34353
3R	2649413	3R_2649413_INS [dm3] 3R_6823691_INS [dm6]	A	ACGAACTA	4.143e^-4	1	UTR_3_PRIME Scr UPSTREAM tRNA:K5:84ABa DOWNSTREAM 7SLRNA:CR32864	regulatory region REDfly_CRMs
3L	7262538	3L_7262538_SNP [dm3] 3L_7269438_SNP [dm6]	C	T	4.144e^-4	1	SYNONYMOUS_CODING unc-13-4A
3L	2263944	3L_2263944_SNP [dm3] 3L_2263944_SNP [dm6]	G	T	4.159e^-4	1	SYNONYMOUS_CODING ecd DOWNSTREAM CG13807	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19153999	2R_19153999_SNP [dm3] 2R_23266476_SNP [dm6]	G	A	4.173e^-4	1	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3370831	2L_3370831_SNP [dm3] 2L_3370831_SNP [dm6]	A	C	4.182e^-4	1	INTRON CG34394
3R	18981490	3R_18981490_INS [dm3] 3R_23155768_INS [dm6]	C	CCTAGGC	4.187e^-4	1	INTRON unk	TF binding site mE1_TFBS_sens
3R	24087320	3R_24087320_SNP [dm3] 3R_28261598_SNP [dm6]	G	C	4.188e^-4	1	INTERGENIC
3R	12908398	3R_12908398_SNP [dm3] 3R_17082676_SNP [dm6]	G	A	4.193e^-4	1	UTR_5_PRIME kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	15634796	3L_15634796_DEL [dm3] 3L_15641696_DEL [dm6]	TTAACTTA	T	4.206e^-4	1	INTRON comm3
3R	2654226	3R_2654226_DEL [dm3] 3R_6828504_DEL [dm6]	GGG	G	4.218e^-4	1	INTRON Scr	regulatory region REDfly_CRMs
2R	18170981	2R_18170981_SNP [dm3] 2R_22283476_SNP [dm6]	C	A	4.225e^-4	1	SYNONYMOUS_CODING dve	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11036658	2R_11036658_SNP [dm3] 2R_15149153_SNP [dm6]	C	T	4.229e^-4	1	INTRON CG7544
2L	8062751	2L_8062751_SNP [dm3] 2L_8062751_SNP [dm6]	A	T	4.245e^-4	1	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18642852	3R_18642852_SNP [dm3] 3R_22817130_SNP [dm6]	G	A	4.247e^-4	1	UPSTREAM CG13840 INTERGENIC
2R	7583192	2R_7583192_SNP [dm3] 2R_11695687_SNP [dm6]	G	T	4.256e^-4	1	UTR_3_PRIME CG13197 DOWNSTREAM CG13197
3R	6444732	3R_6444732_SNP [dm3] 3R_10619010_SNP [dm6]	G	T	4.257e^-4	1	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22607823	3L_22607823_SNP [dm3] 3L_22614723_SNP [dm6]	G	A	4.263e^-4	1	INTRON CG14459	TF binding site mE1_TFBS_chinmo
3R	13138506	3R_13138506_SNP [dm3] 3R_17312784_SNP [dm6]	C	T	4.266e^-4	1	INTERGENIC
3L	7549622	3L_7549622_SNP [dm3] 3L_7556522_SNP [dm6]	T	G	4.271e^-4	1	NON_SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9067334	X_9067334_SNP [dm3] X_9173301_SNP [dm6]	A	T	4.273e^-4	1	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8457407	2R_8457407_SNP [dm3] 2R_12569902_SNP [dm6]	A	C	4.293e^-4	1	UPSTREAM stil & 1 other DOWNSTREAM Cyp301a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	9623642	3R_9623642_SNP [dm3] 3R_13797920_SNP [dm6]	C	G	4.298e^-4	1	UPSTREAM tRNA:CR31588 DOWNSTREAM tRNA:CR31331 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12765579	2R_12765579_SNP [dm3] 2R_16878074_SNP [dm6]	A	T	4.305e^-4	1	INTRON CG8910	TF binding site mE1_TFBS_cad
2R	18449520	2R_18449520_SNP [dm3] 2R_22562015_SNP [dm6]	T	G	4.319e^-4	1	UTR_5_PRIME px UPSTREAM CG11362	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9758741	2L_9758741_SNP [dm3] 2L_9758741_SNP [dm6]	C	T	4.319e^-4	1	START_GAINED zf30C UTR_5_PRIME zf30C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2R	5634948	2R_5634948_SNP [dm3] 2R_9747443_SNP [dm6]	A	T	4.323e^-4	1	UTR_5_PRIME sqa
2R	11946551	2R_11946551_DEL [dm3] 2R_16059046_DEL [dm6]	CGGCAGGAGGAGCCGAGGC...	G	4.326e^-4	1
3R	18681011	3R_18681011_SNP [dm3] 3R_22855289_SNP [dm6]	A	G	4.326e^-4	1	INTERGENIC
2L	20292345	2L_20292345_SNP [dm3] 2L_20292345_SNP [dm6]	C	T	4.332e^-4	1	INTERGENIC
2R	7392806	2R_7392806_SNP [dm3] 2R_11505301_SNP [dm6]	G	T	4.332e^-4	1	INTRON inv
2R	7660317	2R_7660317_SNP [dm3] 2R_11772812_SNP [dm6]	C	A	4.336e^-4	1	INTRON ths
3R	3633551	3R_3633551_INS [dm3] 3R_7807829_INS [dm6]	T	TAATGAGC	4.338e^-4	1	INTRON CG2993	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3633553	3R_3633553_DEL [dm3] 3R_7807831_DEL [dm6]	AGCTCAT	A	4.338e^-4	1	INTRON CG2993	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12449757	2R_12449757_SNP [dm3] 2R_16562252_SNP [dm6]	C	T	4.340e^-4	1	INTRON DAT
3L	15142103	3L_15142103_SNP [dm3] 3L_15149003_SNP [dm6]	A	G	4.349e^-4	1	INTRON FucTA
2L	3885964	2L_3885964_SNP [dm3] 2L_3885964_SNP [dm6]	C	T	4.349e^-4	1	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12284972	2L_12284972_SNP [dm3] 2L_12284972_SNP [dm6]	A	T	4.351e^-4	1	INTRON aret
2R	13978540	2R_13978540_SNP [dm3] 2R_18091035_SNP [dm6]	C	T	4.364e^-4	1	INTRON CG34386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb
X	4376305	X_4376305_SNP [dm3] X_4482272_SNP [dm6]	T	C	4.369e^-4	1	SYNONYMOUS_CODING bi INTRON CR32773
2L	7394996	2L_7394996_SNP [dm3] 2L_7394996_SNP [dm6]	A	G	4.372e^-4	1	INTRON CG5160
3R	3281693	3R_3281693_SNP [dm3] 3R_7455971_SNP [dm6]	C	A	4.372e^-4	1	INTERGENIC
3R	3852410	3R_3852410_SNP [dm3] 3R_8026688_SNP [dm6]	A	T	4.378e^-4	1	INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10215069	X_10215069_SNP [dm3] X_10321036_SNP [dm6]	C	T	4.392e^-4	1	INTRON alpha-Man-I
3L	4724540	3L_4724540_SNP [dm3] 3L_4724540_SNP [dm6]	G	T	4.399e^-4	1	INTRON RhoGEF64C
2R	16787074	2R_16787074_SNP [dm3] 2R_20899569_SNP [dm6]	T	A	4.399e^-4	1	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	15779041	2R_15779041_SNP [dm3] 2R_19891536_SNP [dm6]	T	A	4.409e^-4	1	INTERGENIC
3L	8403303	3L_8403303_SNP [dm3] 3L_8410203_SNP [dm6]	C	T	4.423e^-4	1	SYNONYMOUS_CODING Oseg1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20624947	2L_20624947_SNP [dm3] 2L_20624947_SNP [dm6]	C	T	4.431e^-4	1	INTRON CR44909
2L	4481991	2L_4481991_SNP [dm3] 2L_4481991_SNP [dm6]	G	A	4.437e^-4	1	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2711886	X_2711886_SNP [dm3] X_2817853_SNP [dm6]	C	G	4.455e^-4	1	INTRON kirre
3R	2620446	3R_2620446_SNP [dm3] 3R_6794724_SNP [dm6]	C	T	4.462e^-4	1	INTRON Dfd
3L	9051175	3L_9051175_SNP [dm3] 3L_9058075_SNP [dm6]	G	A	4.465e^-4	1	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	16103057	X_16103057_SNP [dm3] X_16209024_SNP [dm6]	G	A	4.475e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
3R	24172159	3R_24172159_SNP [dm3] 3R_28346437_SNP [dm6]	C	A	4.476e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7438505	2R_7438505_SNP [dm3] 2R_11551000_SNP [dm6]	C	G	4.478e^-4	1	INTERGENIC
2R	15007386	2R_15007386_SNP [dm3] 2R_19119881_SNP [dm6]	C	T	4.478e^-4	1	INTRON 5-HT1A
2R	744986	2R_744986_SNP [dm3] 2R_4857481_SNP [dm6]	A	G	4.483e^-4	1	INTERGENIC	transposable element FlyBase
2L	3370552	2L_3370552_SNP [dm3] 2L_3370552_SNP [dm6]	G	A	4.485e^-4	1	INTRON CG34394
X	4646968	X_4646968_SNP [dm3] X_4752935_SNP [dm6]	A	G	4.493e^-4	1	INTERGENIC
3L	4726658	3L_4726658_SNP [dm3] 3L_4726658_SNP [dm6]	T	C	4.496e^-4	1	INTRON RhoGEF64C
2R	12339586	2R_12339586_SNP [dm3] 2R_16452081_SNP [dm6]	T	C	4.498e^-4	1	INTERGENIC
3L	7827264	3L_7827264_SNP [dm3] 3L_7834164_SNP [dm6]	T	C	4.520e^-4	1	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18157849	3L_18157849_DEL [dm3] 3L_18164749_DEL [dm6]	GCCCGG	G	4.524e^-4	1	INTERGENIC
X	8302665	X_8302665_SNP [dm3] X_8408632_SNP [dm6]	C	G	4.535e^-4	1	UTR_3_PRIME lawc UPSTREAM Trf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16431335	2L_16431335_SNP [dm3] 2L_16431335_SNP [dm6]	C	T	4.541e^-4	1	INTRON CG5888
2R	18991149	2R_18991149_SNP [dm3] 2R_23103626_SNP [dm6]	G	A	4.544e^-4	1	SYNONYMOUS_CODING Gr59c DOWNSTREAM Gr59d
2R	15785524	2R_15785524_SNP [dm3] 2R_19898019_SNP [dm6]	T	C	4.564e^-4	1	EXON CR44572
2L	7676192	2L_7676192_SNP [dm3] 2L_7676192_SNP [dm6]	A	C	4.572e^-4	1	INTRON Myo28B1
X	20533225	X_20533225_SNP [dm3] X_20662198_SNP [dm6]	T	C	4.593e^-4	1	DOWNSTREAM Cyp6v1 INTRON CG1835
2R	11665880	2R_11665880_SNP [dm3] 2R_15778375_SNP [dm6]	G	A	4.594e^-4	1	SYNONYMOUS_CODING Zasp52
2L	4883288	2L_4883288_SNP [dm3] 2L_4883288_SNP [dm6]	T	A	4.599e^-4	1	UPSTREAM CG3008 & 1 other INTERGENIC	TF binding site mE1_TFBS_h
3L	6799403	3L_6799403_SNP [dm3] 3L_6806303_SNP [dm6]	A	T	4.600e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
X	20573365	X_20573365_SNP [dm3] X_20702338_SNP [dm6]	T	C	4.615e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20398735	2L_20398735_SNP [dm3] 2L_20398735_SNP [dm6]	T	A	4.616e^-4	1	INTRON CG10947
X	17816014	X_17816014_SNP [dm3] X_17921981_SNP [dm6]	T	C	4.616e^-4	1	SYNONYMOUS_CODING CG6847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20262246	2L_20262246_SNP [dm3] 2L_20262246_SNP [dm6]	C	T	4.621e^-4	1	INTERGENIC
2L	14049360	2L_14049360_SNP [dm3] 2L_14049360_SNP [dm6]	C	T	4.622e^-4	1	DOWNSTREAM NimC4 INTRON nAChRalpha5
3L	7828131	3L_7828131_SNP [dm3] 3L_7835031_SNP [dm6]	T	C	4.660e^-4	1	INTRON Pdp1
2L	4082589	2L_4082589_SNP [dm3] 2L_4082589_SNP [dm6]	A	G	4.663e^-4	1	INTRON ed
2R	13495553	2R_13495553_SNP [dm3] 2R_17608048_SNP [dm6]	C	G	4.665e^-4	1	SYNONYMOUS_CODING CG10936
2R	14966259	2R_14966259_DEL [dm3] 2R_19078754_DEL [dm6]	AA	A	4.666e^-4	1	INTRON 5-HT1A
3R	13513102	3R_13513102_SNP [dm3] 3R_17687380_SNP [dm6]	T	A	4.673e^-4	1	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3L	7518649	3L_7518649_SNP [dm3] 3L_7525549_SNP [dm6]	G	A	4.683e^-4	1	SPLICE_SITE_REGION ltl INTRON ltl
3R	10410532	3R_10410532_SNP [dm3] 3R_14584810_SNP [dm6]	A	T	4.684e^-4	1	INTRON stumps
3R	3776264	3R_3776264_SNP [dm3] 3R_7950542_SNP [dm6]	A	T	4.684e^-4	1	INTRON dsx
2R	14279523	2R_14279523_SNP [dm3] 2R_18392018_SNP [dm6]	C	G	4.685e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14311182	3R_14311182_SNP [dm3] 3R_18485460_SNP [dm6]	A	T	4.689e^-4	1	INTRON fru
3R	3227065	3R_3227065_DEL [dm3] 3R_7401343_DEL [dm6]	GGCTGGCCAGCCA...	G	4.693e^-4	1	INTERGENIC
3L	8161913	3L_8161913_SNP [dm3] 3L_8168813_SNP [dm6]	A	T	4.694e^-4	1	INTERGENIC
3R	14679561	3R_14679561_SNP [dm3] 3R_18853839_SNP [dm6]	T	A	4.698e^-4	1	INTERGENIC
3L	8161891	3L_8161891_SNP [dm3] 3L_8168791_SNP [dm6]	A	T	4.700e^-4	1	INTERGENIC
2L	16431294	2L_16431294_INS [dm3] 2L_16431294_INS [dm6]	T	TATCT	4.703e^-4	1	INTRON CG5888
2R	13975041	2R_13975041_SNP [dm3] 2R_18087536_SNP [dm6]	A	C	4.703e^-4	1	INTRON CG34386
3L	7098006	3L_7098006_SNP [dm3] 3L_7104906_SNP [dm6]	A	G	4.705e^-4	1	INTRON form3
2L	17304331	2L_17304331_SNP [dm3] 2L_17304331_SNP [dm6]	G	A	4.710e^-4	1	INTERGENIC
2R	6709608	2R_6709608_SNP [dm3] 2R_10822103_SNP [dm6]	T	C	4.713e^-4	1	SYNONYMOUS_CODING RpS15Ab UPSTREAM Lsm10 DOWNSTREAM Prosbeta5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	21996873	3R_21996873_SNP [dm3] 3R_26171151_SNP [dm6]	G	A	4.716e^-4	1	UPSTREAM CG31323 INTRON CG31323
3L	8999387	3L_8999387_SNP [dm3] 3L_9006287_SNP [dm6]	A	G	4.721e^-4	1	SYNONYMOUS_CODING Doc3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12339989	2R_12339989_SNP [dm3] 2R_16452484_SNP [dm6]	T	A	4.736e^-4	1	INTERGENIC
3R	24797399	3R_24797399_SNP [dm3] 3R_28971677_SNP [dm6]	A	C	4.738e^-4	1	EXON CR45669
2L	12284784	2L_12284784_SNP [dm3] 2L_12284784_SNP [dm6]	A	G	4.740e^-4	1	INTRON aret
2L	15487367	2L_15487367_SNP [dm3] 2L_15487367_SNP [dm6]	G	T	4.743e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15642706	3R_15642706_SNP [dm3] 3R_19816984_SNP [dm6]	T	C	4.767e^-4	1	INTRON bnl	TF binding site BDTNP1_TFBS_twi
3R	14146674	3R_14146674_INS [dm3] 3R_18320952_INS [dm6]	A	ACATA	4.768e^-4	1	INTRON CG31235
X	5966823	X_5966823_SNP [dm3] X_6072790_SNP [dm6]	G	A	4.784e^-4	1	INTRON Tsp5D	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	2801730	X_2801730_SNP [dm3] X_2907697_SNP [dm6]	G	C	4.790e^-4	1	INTRON kirre
3L	10694932	3L_10694932_INS [dm3] 3L_10701832_INS [dm6]	A	AGCAAATTGTATA...	4.792e^-4	1	INTERGENIC
3R	25407097	3R_25407097_SNP [dm3] 3R_29581375_SNP [dm6]	C	T	4.802e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1257624	2L_1257624_SNP [dm3] 2L_1257624_SNP [dm6]	A	T	4.807e^-4	1	INTRON robo3
2R	17547345	2R_17547345_SNP [dm3] 2R_21659840_SNP [dm6]	G	T	4.816e^-4	1	SYNONYMOUS_CODING Rae1	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	17856941	2R_17856941_SNP [dm3] 2R_21969436_SNP [dm6]	A	T	4.817e^-4	1	INTRON ppk9
3R	10571064	3R_10571064_SNP [dm3] 3R_14745342_SNP [dm6]	G	A	4.826e^-4	1	DOWNSTREAM smp-30 INTRON jvl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	11818170	2R_11818170_SNP [dm3] 2R_15930665_SNP [dm6]	A	T	4.826e^-4	1	INTRON bdg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	7074297	2L_7074297_SNP [dm3] 2L_7074297_SNP [dm6]	G	T	4.835e^-4	1	SYNONYMOUS_CODING Pvf2
2L	6747906	2L_6747906_SNP [dm3] 2L_6747906_SNP [dm6]	A	G	4.835e^-4	1	UTR_5_PRIME CG44271 INTRON CG11221
2R	18355988	2R_18355988_SNP [dm3] 2R_22468483_SNP [dm6]	T	A	4.845e^-4	1	INTRON CG10384	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9283470	X_9283470_SNP [dm3] X_9389437_SNP [dm6]	T	C	4.858e^-4	1	INTRON mgl
2R	16713655	2R_16713655_DEL [dm3] 2R_20826150_DEL [dm6]	GG	A	4.865e^-4	1	INTRON insc
3R	16726205	3R_16726205_SNP [dm3] 3R_20900483_SNP [dm6]	T	C	4.867e^-4	1	INTERGENIC
3R	26098491	3R_26098491_SNP [dm3] 3R_30272769_SNP [dm6]	A	T	4.878e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20476804	2L_20476804_SNP [dm3] 2L_20476804_SNP [dm6]	C	T	4.883e^-4	1	INTRON CR44980 EXON CR43234	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3133699	2L_3133699_DEL [dm3] 2L_3133699_DEL [dm6]	TT	T	4.887e^-4	1	INTRON toc
3R	6880972	3R_6880972_SNP [dm3] 3R_11055250_SNP [dm6]	A	G	4.887e^-4	1	INTERGENIC
3R	15172122	3R_15172122_SNP [dm3] 3R_19346400_SNP [dm6]	G	T	4.888e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	11180322	3L_11180322_DEL [dm3] 3L_11187222_DEL [dm6]	AATGTTGGC	A	4.899e^-4	1	INTRON GlcAT-P
3R	4066324	3R_4066324_SNP [dm3] 3R_8240602_SNP [dm6]	C	A	4.904e^-4	1	UPSTREAM Ada2b DOWNSTREAM CG9636 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	3748056	3R_3748056_SNP [dm3] 3R_7922334_SNP [dm6]	C	T	4.917e^-4	1	SYNONYMOUS_CODING lds DOWNSTREAM scaRNA:MeU2-C41
3R	13647150	3R_13647150_INS [dm3] 3R_17821428_INS [dm6]	T	TT	4.926e^-4	1	INTRON tinc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7638297	2R_7638297_SNP [dm3] 2R_11750792_SNP [dm6]	C	T	4.928e^-4	1	INTERGENIC
2L	5927392	2L_5927392_SNP [dm3] 2L_5927392_SNP [dm6]	G	A	4.930e^-4	1	INTRON dsf
2L	16594374	2L_16594374_SNP [dm3] 2L_16594374_SNP [dm6]	G	A	4.932e^-4	1	INTRON CG42389	TF binding site mE1_TFBS_HSA
3R	635641	3R_635641_SNP [dm3] 3R_4809919_SNP [dm6]	A	G	4.934e^-4	1	INTRON ctrip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8161414	3L_8161414_SNP [dm3] 3L_8168314_SNP [dm6]	A	G	4.935e^-4	1	INTERGENIC
3L	10820691	3L_10820691_SNP [dm3] 3L_10827591_SNP [dm6]	G	C	4.939e^-4	1	INTERGENIC
3R	3726942	3R_3726942_SNP [dm3] 3R_7901220_SNP [dm6]	A	C	4.945e^-4	1	DOWNSTREAM wtrw INTRON mRpS9
3R	629907	3R_629907_SNP [dm3] 3R_4804185_SNP [dm6]	C	T	4.959e^-4	1	INTRON ctrip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12347542	2R_12347542_SNP [dm3] 2R_16460037_SNP [dm6]	C	T	4.960e^-4	1	INTERGENIC
3L	10905265	3L_10905265_SNP [dm3] 3L_10912165_SNP [dm6]	C	G	4.963e^-4	1	INTERGENIC
3R	3726926	3R_3726926_SNP [dm3] 3R_7901204_SNP [dm6]	G	A	4.994e^-4	1	DOWNSTREAM wtrw INTRON mRpS9
2R	20051467	2R_20051467_SNP [dm3] 2R_24163944_SNP [dm6]	A	G	4.994e^-4	1	INTRON CG3328	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10694913	3L_10694913_SNP [dm3] 3L_10701813_SNP [dm6]	A	T	4.995e^-4	1	INTERGENIC
X	1199921	X_1199921_DEL [dm3] X_1305888_DEL [dm6]	GG	G	4.996e^-4	1	INTRON DAAM
3R	17657862	3R_17657862_SNP [dm3] 3R_21832140_SNP [dm6]	A	T	4.999e^-4	1	UPSTREAM Gr93a INTERGENIC
X	17462708	X_17462708_SNP [dm3] X_17568675_SNP [dm6]	G	A	5.002e^-4	1	INTRON ppk23
2L	2845604	2L_2845604_SNP [dm3] 2L_2845604_SNP [dm6]	C	T	5.009e^-4	1	SYNONYMOUS_CODING CG18557 DOWNSTREAM CG3117
2R	11034088	2R_11034088_SNP [dm3] 2R_15146583_SNP [dm6]	A	G	5.025e^-4	1	SYNONYMOUS_CODING CG8089	TF binding site mE1_TFBS_sens
2L	9773249	2L_9773249_SNP [dm3] 2L_9773249_SNP [dm6]	G	A	5.045e^-4	1	SYNONYMOUS_CODING ppk11 UPSTREAM ppk16
2R	6736137	2R_6736137_SNP [dm3] 2R_10848632_SNP [dm6]	C	T	5.048e^-4	1	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad
2R	6353143	2R_6353143_SNP [dm3] 2R_10465638_SNP [dm6]	T	C	5.051e^-4	1	UTR_3_PRIME Galphao DOWNSTREAM Caf1-105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18653544	2R_18653544_SNP [dm3] 2R_22766039_SNP [dm6]	C	G	5.056e^-4	1	DOWNSTREAM CG13527 INTRON CG42260
3R	19728352	3R_19728352_SNP [dm3] 3R_23902630_SNP [dm6]	G	T	5.072e^-4	1	INTRON sba
3R	8372705	3R_8372705_SNP [dm3] 3R_12546983_SNP [dm6]	A	G	5.073e^-4	1	INTRON Octbeta3R
2L	10805221	2L_10805221_SNP [dm3] 2L_10805221_SNP [dm6]	C	T	5.080e^-4	1	INTRON Nos
3L	10443712	3L_10443712_SNP [dm3] 3L_10450612_SNP [dm6]	A	C	5.088e^-4	1	INTERGENIC
2L	5567402	2L_5567402_SNP [dm3] 2L_5567402_SNP [dm6]	C	T	5.090e^-4	1	INTERGENIC
2R	2848543	2R_2848543_SNP [dm3] 2R_6961038_SNP [dm6]	C	T	5.090e^-4	1	INTRON mim & 1 other	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3157660	3R_3157660_SNP [dm3] 3R_7331938_SNP [dm6]	G	A	5.092e^-4	1	EXON CR44337
3L	2950085	3L_2950085_SNP [dm3] 3L_2950085_SNP [dm6]	G	C	5.096e^-4	1	DOWNSTREAM CG32846 INTRON Shab
3R	13513073	3R_13513073_SNP [dm3] 3R_17687351_SNP [dm6]	C	A	5.110e^-4	1	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3L	17496752	3L_17496752_SNP [dm3] 3L_17503652_SNP [dm6]	A	T	5.140e^-4	1	INTRON Oatp74D
3R	3706071	3R_3706071_SNP [dm3] 3R_7880349_SNP [dm6]	T	A	5.145e^-4	1	INTRON CG17816
3R	3198340	3R_3198340_SNP [dm3] 3R_7372618_SNP [dm6]	A	C	5.156e^-4	1	INTERGENIC
3L	15316876	3L_15316876_SNP [dm3] 3L_15323776_SNP [dm6]	C	G	5.180e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5628602	3L_5628602_SNP [dm3] 3L_5635502_SNP [dm6]	C	T	5.197e^-4	1	UPSTREAM Blimp-1 INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7262755	3L_7262755_DEL [dm3] 3L_7269655_DEL [dm6]	AATGTAGT	A	5.208e^-4	1	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
2L	16429791	2L_16429791_SNP [dm3] 2L_16429791_SNP [dm6]	C	T	5.210e^-4	1	INTRON CG5888
3L	9870900	3L_9870900_SNP [dm3] 3L_9877800_SNP [dm6]	G	A	5.215e^-4	1	INTERGENIC
X	20573458	X_20573458_SNP [dm3] X_20702431_SNP [dm6]	A	C	5.217e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	20447594	X_20447594_SNP [dm3] X_20576567_SNP [dm6]	T	A	5.230e^-4	1	INTERGENIC
2R	4727426	2R_4727426_SNP [dm3] 2R_8839921_SNP [dm6]	T	A	5.234e^-4	1	INTRON sns
3L	6873216	3L_6873216_SNP [dm3] 3L_6880116_SNP [dm6]	A	G	5.240e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16213284	3L_16213284_SNP [dm3] 3L_16220184_SNP [dm6]	A	G	5.244e^-4	1	INTERGENIC
2R	11038120	2R_11038120_SNP [dm3] 2R_15150615_SNP [dm6]	A	G	5.249e^-4	1	DOWNSTREAM CG7544 INTERGENIC
3R	861347	3R_861347_SNP [dm3] 3R_5035625_SNP [dm6]	G	A	5.252e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18569639	3L_18569639_INS [dm3] 3L_18576539_INS [dm6]	A	AA	5.282e^-4	1	DOWNSTREAM AstC-R1 INTERGENIC
3L	13397476	3L_13397476_SNP [dm3] 3L_13404376_SNP [dm6]	T	G	5.286e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	11815727	2R_11815727_SNP [dm3] 2R_15928222_SNP [dm6]	A	G	5.287e^-4	1	UTR_5_PRIME bdg INTRON bdg
3R	20544798	3R_20544798_SNP [dm3] 3R_24719076_SNP [dm6]	T	C	5.291e^-4	1	UPSTREAM tok INTRON CG13630	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	10997129	3R_10997129_SNP [dm3] 3R_15171407_SNP [dm6]	T	G	5.292e^-4	1	INTRON Gyc88E & 1 other
3R	26089160	3R_26089160_SNP [dm3] 3R_30263438_SNP [dm6]	C	T	5.300e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3577787	3L_3577787_DEL [dm3] 3L_3577787_DEL [dm6]	TAGGCAGAGGTTTTAAATAT...	T	5.305e^-4	1	INTRON Eip63E
2R	1438202	2R_1438202_SNP [dm3] 2R_5550697_SNP [dm6]	G	A	5.308e^-4	1	INTERGENIC
X	8813561	X_8813561_SNP [dm3] X_8919528_SNP [dm6]	C	A	5.308e^-4	1	DOWNSTREAM CR44111 INTRON rdgA
3R	17216217	3R_17216217_SNP [dm3] 3R_21390495_SNP [dm6]	T	C	5.317e^-4	1	DOWNSTREAM bap INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	20269282	2L_20269282_SNP [dm3] 2L_20269282_SNP [dm6]	G	A	5.320e^-4	1	INTERGENIC
3L	12202220	3L_12202220_SNP [dm3] 3L_12209120_SNP [dm6]	T	A	5.343e^-4	1	UTR_3_PRIME app INTRON app
2L	16431291	2L_16431291_SNP [dm3] 2L_16431291_SNP [dm6]	A	G	5.351e^-4	1	INTRON CG5888
X	5716739	X_5716739_DEL [dm3] X_5822706_DEL [dm6]	ACATA	A	5.354e^-4	1	INTRON CG15765	TF binding site mE1_TFBS_chinmo
2L	5567381	2L_5567381_SNP [dm3] 2L_5567381_SNP [dm6]	A	G	5.362e^-4	1	INTERGENIC
3R	19062499	3R_19062499_SNP [dm3] 3R_23236777_SNP [dm6]	T	G	5.364e^-4	1	INTRON CG4467
3R	3195946	3R_3195946_SNP [dm3] 3R_7370224_SNP [dm6]	G	A	5.366e^-4	1	UPSTREAM MstProx INTERGENIC
2R	4519663	2R_4519663_SNP [dm3] 2R_8632158_SNP [dm6]	G	T	5.371e^-4	1	UPSTREAM CG8635 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	629550	3R_629550_SNP [dm3] 3R_4803828_SNP [dm6]	G	T	5.379e^-4	1	UPSTREAM ctrip INTRON ctrip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15696722	3L_15696722_SNP [dm3] 3L_15703622_SNP [dm6]	T	C	5.428e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17657846	3R_17657846_SNP [dm3] 3R_21832124_SNP [dm6]	G	A	5.430e^-4	1	UPSTREAM Gr93a INTERGENIC
X	18042663	X_18042663_SNP [dm3] X_18148630_SNP [dm6]	A	T	5.434e^-4	1	INTERGENIC
2L	9757600	2L_9757600_SNP [dm3] 2L_9757600_SNP [dm6]	C	A	5.440e^-4	1	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_run
2L	9995639	2L_9995639_SNP [dm3] 2L_9995639_SNP [dm6]	C	T	5.457e^-4	1	UTR_3_PRIME CG31875 DOWNSTREAM bib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9995646	2L_9995646_SNP [dm3] 2L_9995646_SNP [dm6]	T	A	5.457e^-4	1	UTR_3_PRIME CG31875 DOWNSTREAM bib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2138650	3R_2138650_SNP [dm3] 3R_6312928_SNP [dm6]	C	T	5.457e^-4	1	INTRON Osi17
2R	16353406	2R_16353406_SNP [dm3] 2R_20465901_SNP [dm6]	T	G	5.460e^-4	1	INTRON CG12484
3L	15634813	3L_15634813_SNP [dm3] 3L_15641713_SNP [dm6]	G	A	5.464e^-4	1	INTRON comm3
2L	10928273	2L_10928273_INS [dm3] 2L_10928273_INS [dm6]	A	ATATATTAACGGTT...	5.468e^-4	1	INTRON dpr2
3R	26678407	3R_26678407_SNP [dm3] 3R_30852685_SNP [dm6]	A	G	5.468e^-4	1	INTRON tll	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17856181	2R_17856181_SNP [dm3] 2R_21968676_SNP [dm6]	C	A	5.482e^-4	1	SYNONYMOUS_CODING ppk9
2R	8721902	2R_8721902_SNP [dm3] 2R_12834397_SNP [dm6]	C	T	5.487e^-4	1	INTERGENIC
3R	22247055	3R_22247055_SNP [dm3] 3R_26421333_SNP [dm6]	T	A	5.489e^-4	1	INTERGENIC
2R	18724156	2R_18724156_SNP [dm3] 2R_22836633_SNP [dm6]	T	C	5.495e^-4	1	UTR_3_PRIME CG12490 UPSTREAM CG9825
3L	17496753	3L_17496753_SNP [dm3] 3L_17503653_SNP [dm6]	T	A	5.509e^-4	1	INTRON Oatp74D
3R	22753990	3R_22753990_SNP [dm3] 3R_26928268_SNP [dm6]	A	G	5.518e^-4	1	INTRON sda
2R	19149997	2R_19149997_SNP [dm3] 2R_23262474_SNP [dm6]	T	G	5.525e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7639181	2R_7639181_SNP [dm3] 2R_11751676_SNP [dm6]	T	G	5.535e^-4	1	INTERGENIC
3L	1363400	3L_1363400_DEL [dm3] 3L_1363400_DEL [dm6]	GGGTG	G	5.544e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl
2R	2644708	2R_2644708_SNP [dm3] 2R_6757203_SNP [dm6]	G	T	5.549e^-4	1	UTR_5_PRIME CG3420 UPSTREAM CG3420 DOWNSTREAM Eb1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	14305071	3L_14305071_SNP [dm3] 3L_14311971_SNP [dm6]	A	G	5.549e^-4	1	SYNONYMOUS_CODING fz
3L	1625362	3L_1625362_SNP [dm3] 3L_1625362_SNP [dm6]	T	C	5.551e^-4	1	SYNONYMOUS_CODING GC DOWNSTREAM CG13928	TF binding site mE1_TFBS_cad
3L	20704889	3L_20704889_SNP [dm3] 3L_20711789_SNP [dm6]	T	A	5.552e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	9284736	3L_9284736_SNP [dm3] 3L_9291636_SNP [dm6]	G	A	5.562e^-4	1	INTERGENIC
X	16896683	X_16896683_SNP [dm3] X_17002650_SNP [dm6]	A	T	5.563e^-4	1	INTRON CG45002
2L	6747920	2L_6747920_SNP [dm3] 2L_6747920_SNP [dm6]	C	G	5.580e^-4	1	UPSTREAM CG44271 INTRON CG11221
3R	6880934	3R_6880934_SNP [dm3] 3R_11055212_SNP [dm6]	G	A	5.582e^-4	1	INTERGENIC
X	21350370	X_21350370_SNP [dm3] X_21479343_SNP [dm6]	A	G	5.594e^-4	1	UPSTREAM Ir20a DOWNSTREAM CR45509 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	9534996	3R_9534996_SNP [dm3] 3R_13709274_SNP [dm6]	A	G	5.620e^-4	1	STOP_LOST CG31469 DOWNSTREAM primo-2 & 2 others
3R	13073542	3R_13073542_SNP [dm3] 3R_17247820_SNP [dm6]	T	C	5.634e^-4	1	UTR_5_PRIME beat-IIb	TF binding site BDTNP1_TFBS_twi
2L	9503247	2L_9503247_DEL [dm3] 2L_9503247_DEL [dm6]	TGA	T	5.641e^-4	1	INTRON CG33298	transposable element FlyBase
3R	20508385	3R_20508385_SNP [dm3] 3R_24682663_SNP [dm6]	T	C	5.642e^-4	1	INTRON slo
3R	13512913	3R_13512913_SNP [dm3] 3R_17687191_SNP [dm6]	A	G	5.642e^-4	1	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3R	17979377	3R_17979377_SNP [dm3] 3R_22153655_SNP [dm6]	T	A	5.646e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8729889	3L_8729889_SNP [dm3] 3L_8736789_SNP [dm6]	A	G	5.648e^-4	1	UTR_3_PRIME Prm INTRON Prm	TF binding site mE1_TFBS_inv
3R	16931267	3R_16931267_SNP [dm3] 3R_21105545_SNP [dm6]	A	G	5.652e^-4	1	SYNONYMOUS_CODING Sec15 DOWNSTREAM CG5745	TF binding site mE1_TFBS_cad
3R	14679336	3R_14679336_SNP [dm3] 3R_18853614_SNP [dm6]	T	C	5.655e^-4	1	INTERGENIC
2R	18189744	2R_18189744_SNP [dm3] 2R_22302239_SNP [dm6]	T	G	5.661e^-4	1	UPSTREAM wdp INTRON wdp	TF binding site BDTNP1_TFBS_da
X	19274594	X_19274594_SNP [dm3] X_19380561_SNP [dm6]	T	G	5.670e^-4	1	INTRON kek5
3L	5909414	3L_5909414_SNP [dm3] 3L_5916314_SNP [dm6]	A	G	5.672e^-4	1	INTRON CG13288
3L	15634826	3L_15634826_SNP [dm3] 3L_15641726_SNP [dm6]	T	A	5.681e^-4	1	INTRON comm3
X	999012	X_999012_SNP [dm3] X_1104979_SNP [dm6]	A	T	5.689e^-4	1	INTRON CG3655
2R	10892087	2R_10892087_SNP [dm3] 2R_15004582_SNP [dm6]	G	A	5.696e^-4	1	INTERGENIC
2L	17307057	2L_17307057_SNP [dm3] 2L_17307057_SNP [dm6]	A	C	5.697e^-4	1	INTERGENIC
X	6810501	X_6810501_SNP [dm3] X_6916468_SNP [dm6]	G	A	5.703e^-4	1	INTRON CG14431
2R	15244813	2R_15244813_DEL [dm3] 2R_19357308_DEL [dm6]	AGAGAGA	A	5.707e^-4	1	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14728768	X_14728768_SNP [dm3] X_14834735_SNP [dm6]	C	T	5.708e^-4	1	SYNONYMOUS_CODING CG14411	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19051990	3R_19051990_SNP [dm3] 3R_23226268_SNP [dm6]	G	C	5.711e^-4	1	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18732775	2R_18732775_SNP [dm3] 2R_22845252_SNP [dm6]	A	G	5.712e^-4	1	UPSTREAM CG3649 INTERGENIC
2L	19141070	2L_19141070_DEL [dm3] 2L_19141070_DEL [dm6]	AACATTT	A	5.724e^-4	1	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19763641	3R_19763641_SNP [dm3] 3R_23937919_SNP [dm6]	T	A	5.727e^-4	1	NON_SYNONYMOUS_CODING Gdh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5069019	3R_5069019_SNP [dm3] 3R_9243297_SNP [dm6]	G	T	5.728e^-4	1	SYNONYMOUS_CODING ird1	TF binding site mE1_TFBS_sens
3L	4871845	3L_4871845_SNP [dm3] 3L_4871845_SNP [dm6]	G	A	5.729e^-4	1	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	3172782	3R_3172782_SNP [dm3] 3R_7347060_SNP [dm6]	T	C	5.730e^-4	1	SYNONYMOUS_CODING nxf4 DOWNSTREAM CG31496	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	16619492	2L_16619492_DEL [dm3] 2L_16619492_DEL [dm6]	CC	C	5.733e^-4	1	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3097232	3R_3097232_SNP [dm3] 3R_7271510_SNP [dm6]	C	T	5.734e^-4	1	UPSTREAM CG10032 DOWNSTREAM Syt4 INTERGENIC
2R	3425340	2R_3425340_SNP [dm3] 2R_7537835_SNP [dm6]	T	A	5.740e^-4	1	SYNONYMOUS_CODING CG2137 DOWNSTREAM CG1598	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2264748	2L_2264748_SNP [dm3] 2L_2264748_SNP [dm6]	T	C	5.744e^-4	1	DOWNSTREAM CG4270 INTRON CG34049
2R	11037110	2R_11037110_SNP [dm3] 2R_15149605_SNP [dm6]	C	T	5.745e^-4	1	UTR_3_PRIME CG7544
3R	7783394	3R_7783394_INS [dm3] 3R_11957672_INS [dm6]	T	TATAT	5.747e^-4	1	UPSTREAM Hsp70Ab INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	15951909	3R_15951909_SNP [dm3] 3R_20126187_SNP [dm6]	A	G	5.750e^-4	1	INTERGENIC
2R	3812569	2R_3812569_SNP [dm3] 2R_7925064_SNP [dm6]	A	T	5.753e^-4	1	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	10219431	2L_10219431_SNP [dm3] 2L_10219431_SNP [dm6]	T	C	5.758e^-4	1	INTRON Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	22247014	3R_22247014_SNP [dm3] 3R_26421292_SNP [dm6]	A	G	5.759e^-4	1	INTERGENIC
3L	13397468	3L_13397468_SNP [dm3] 3L_13404368_SNP [dm6]	G	A	5.762e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2L	20395793	2L_20395793_SNP [dm3] 2L_20395793_SNP [dm6]	A	T	5.766e^-4	1	INTRON CG10947
3L	1363033	3L_1363033_SNP [dm3] 3L_1363033_SNP [dm6]	C	A	5.766e^-4	1	INTRON Ptp61F
2R	6089048	2R_6089048_SNP [dm3] 2R_10201543_SNP [dm6]	T	C	5.773e^-4	1	INTERGENIC
3L	6801834	3L_6801834_SNP [dm3] 3L_6808734_SNP [dm6]	G	A	5.773e^-4	1	INTERGENIC
3R	18642857	3R_18642857_SNP [dm3] 3R_22817135_SNP [dm6]	A	G	5.776e^-4	1	UPSTREAM CG13840 INTERGENIC
3R	17216516	3R_17216516_DEL [dm3] 3R_21390794_DEL [dm6]	CTACAA	C	5.781e^-4	1	DOWNSTREAM bap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	10898794	2R_10898794_SNP [dm3] 2R_15011289_SNP [dm6]	T	A	5.803e^-4	1	UPSTREAM hbs INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3L	2952546	3L_2952546_SNP [dm3] 3L_2952546_SNP [dm6]	T	A	5.808e^-4	1	UPSTREAM CG32846 INTRON Shab
3L	15323508	3L_15323508_INS [dm3] 3L_15330408_INS [dm6]	C	CTCAAAGTCAACTC...	5.821e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5926908	2L_5926908_SNP [dm3] 2L_5926908_SNP [dm6]	C	T	5.823e^-4	1	UPSTREAM CR43926 INTRON dsf
2L	5926927	2L_5926927_SNP [dm3] 2L_5926927_SNP [dm6]	A	C	5.823e^-4	1	UPSTREAM CR43926 INTRON dsf
X	20267856	X_20267856_SNP [dm3] X_20396829_SNP [dm6]	T	C	5.837e^-4	1	INTRON HERC2	TF binding site BDTNP1_TFBS_da
3R	636446	3R_636446_SNP [dm3] 3R_4810724_SNP [dm6]	A	T	5.858e^-4	1	UTR_5_PRIME ctrip & 1 other UPSTREAM CG1129 INTRON ctrip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	4885188	2L_4885188_SNP [dm3] 2L_4885188_SNP [dm6]	G	A	5.858e^-4	1	SYNONYMOUS_CODING CG3008	TF binding site mE1_TFBS_sens
3R	12862523	3R_12862523_SNP [dm3] 3R_17036801_SNP [dm6]	A	C	5.865e^-4	1	SYNONYMOUS_CODING CG18213 UPSTREAM CG4009
3R	2648934	3R_2648934_SNP [dm3] 3R_6823212_SNP [dm6]	C	G	5.866e^-4	1	UTR_3_PRIME Scr UPSTREAM tRNA:K5:84ABa DOWNSTREAM 7SLRNA:CR32864	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19731606	3R_19731606_SNP [dm3] 3R_23905884_SNP [dm6]	C	A	5.875e^-4	1	INTRON sba
3R	3721688	3R_3721688_SNP [dm3] 3R_7895966_SNP [dm6]	C	T	5.878e^-4	1	START_GAINED wtrw UTR_5_PRIME wtrw INTRON mRpS9 & 1 other
3L	8999089	3L_8999089_SNP [dm3] 3L_9005989_SNP [dm6]	C	T	5.894e^-4	1	SYNONYMOUS_CODING Doc3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10224089	3R_10224089_SNP [dm3] 3R_14398367_SNP [dm6]	A	G	5.896e^-4	1	INTRON cv-c
3L	14223878	3L_14223878_SNP [dm3] 3L_14230778_SNP [dm6]	C	T	5.902e^-4	1	SYNONYMOUS_CODING nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	9624330	3R_9624330_SNP [dm3] 3R_13798608_SNP [dm6]	A	C	5.905e^-4	1	UPSTREAM tRNA:CR31331 DOWNSTREAM tRNA:CR31588 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9668019	2L_9668019_SNP [dm3] 2L_9668019_SNP [dm6]	C	T	5.909e^-4	1	INTERGENIC
3L	8151198	3L_8151198_SNP [dm3] 3L_8158098_SNP [dm6]	G	A	5.923e^-4	1	INTRON CG42445
3R	9624203	3R_9624203_SNP [dm3] 3R_13798481_SNP [dm6]	A	C	5.925e^-4	1	UPSTREAM tRNA:CR31331 DOWNSTREAM tRNA:CR31588 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23437553	3R_23437553_SNP [dm3] 3R_27611831_SNP [dm6]	G	A	5.926e^-4	1	INTRON Tusp	TF binding site mE1_TFBS_inv
X	11101269	X_11101269_SNP [dm3] X_11207236_SNP [dm6]	T	C	5.931e^-4	1	INTERGENIC
X	15550288	X_15550288_INS [dm3] X_15656255_INS [dm6]	T	TTTGG	5.944e^-4	1	INTERGENIC
3R	20046410	3R_20046410_SNP [dm3] 3R_24220688_SNP [dm6]	T	A	5.946e^-4	1	UPSTREAM cav INTRON twin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	18642907	3R_18642907_SNP [dm3] 3R_22817185_SNP [dm6]	T	A	5.958e^-4	1	INTERGENIC
3L	16289232	3L_16289232_SNP [dm3] 3L_16296132_SNP [dm6]	A	T	5.967e^-4	1	UPSTREAM CG4962 INTERGENIC
2R	8861949	2R_8861949_SNP [dm3] 2R_12974444_SNP [dm6]	C	A	5.980e^-4	1	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22042584	2L_22042584_SNP [dm3] 2L_22042584_SNP [dm6]	A	C	5.989e^-4	1	NON_SYNONYMOUS_CODING CG31601
3L	14223552	3L_14223552_SNP [dm3] 3L_14230452_SNP [dm6]	A	G	5.996e^-4	1	INTRON nuf
2R	15047969	2R_15047969_SNP [dm3] 2R_19160464_SNP [dm6]	G	A	5.997e^-4	1	SYNONYMOUS_CODING ena
3R	3097541	3R_3097541_SNP [dm3] 3R_7271819_SNP [dm6]	A	T	6.009e^-4	1	NON_SYNONYMOUS_CODING CG10032 DOWNSTREAM rn
2L	16380515	2L_16380515_SNP [dm3] 2L_16380515_SNP [dm6]	T	A	6.013e^-4	1	INTERGENIC
3L	11408947	3L_11408947_SNP [dm3] 3L_11415847_SNP [dm6]	C	G	6.013e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12765570	2R_12765570_SNP [dm3] 2R_16878065_SNP [dm6]	T	C	6.017e^-4	1	INTRON CG8910	TF binding site mE1_TFBS_cad
3R	13072522	3R_13072522_SNP [dm3] 3R_17246800_SNP [dm6]	A	G	6.022e^-4	1	INTRON beat-IIb
2L	3372029	2L_3372029_SNP [dm3] 2L_3372029_SNP [dm6]	A	G	6.023e^-4	1	UPSTREAM CG34394 INTRON CG34394
2R	12814319	2R_12814319_SNP [dm3] 2R_16926814_SNP [dm6]	G	A	6.029e^-4	1	SPLICE_SITE_REGION Pkc53E INTRON Pkc53E
3L	13128488	3L_13128488_SNP [dm3] 3L_13135388_SNP [dm6]	C	A	6.031e^-4	1	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6949993	2R_6949993_SNP [dm3] 2R_11062488_SNP [dm6]	C	A	6.033e^-4	1	INTRON luna
2R	20534322	2R_20534322_DEL [dm3] 2R_24646799_DEL [dm6]	AAGTC	A	6.038e^-4	1	INTERGENIC
2R	10001198	2R_10001198_SNP [dm3] 2R_14113693_SNP [dm6]	C	A	6.039e^-4	1	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	16195575	3L_16195575_DEL [dm3] 3L_16202475_DEL [dm6]	GG	G	6.044e^-4	1	DOWNSTREAM CG33690 INTERGENIC
3R	26488902	3R_26488902_SNP [dm3] 3R_30663180_SNP [dm6]	T	A	6.047e^-4	1	INTERGENIC
3R	9623603	3R_9623603_SNP [dm3] 3R_13797881_SNP [dm6]	C	A	6.048e^-4	1	UPSTREAM tRNA:CR31588 DOWNSTREAM tRNA:CR31331 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	3003494	3R_3003494_SNP [dm3] 3R_7177772_SNP [dm6]	G	T	6.053e^-4	1	INTRON sas
3L	21250184	3L_21250184_SNP [dm3] 3L_21257084_SNP [dm6]	C	A	6.058e^-4	1	UPSTREAM CG43218 INTRON Eip78C	TF binding site mE1_TFBS_HSA
3R	639447	3R_639447_SNP [dm3] 3R_4813725_SNP [dm6]	A	G	6.061e^-4	1	START_GAINED CG1129 UTR_5_PRIME CG1129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	9758396	2L_9758396_SNP [dm3] 2L_9758396_SNP [dm6]	T	G	6.065e^-4	1	UTR_5_PRIME zf30C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2R	19288131	2R_19288131_SNP [dm3] 2R_23400608_SNP [dm6]	C	A	6.066e^-4	1	INTRON CG3520	TF binding site mE1_TFBS_chinmo
3R	10965118	3R_10965118_SNP [dm3] 3R_15139396_SNP [dm6]	A	G	6.070e^-4	1	UPSTREAM CG3987 DOWNSTREAM CG3984 EXON CR45600
X	14787769	X_14787769_SNP [dm3] X_14893736_SNP [dm6]	T	A	6.072e^-4	1	INTRON Flo2 & 1 other
3L	8403402	3L_8403402_SNP [dm3] 3L_8410302_SNP [dm6]	G	A	6.074e^-4	1	SYNONYMOUS_CODING Oseg1	TF binding site mE1_TFBS_sens
2R	13769684	2R_13769684_SNP [dm3] 2R_17882179_SNP [dm6]	A	G	6.077e^-4	1	UTR_5_PRIME CG30110 INTRON Elk
3R	14777360	3R_14777360_SNP [dm3] 3R_18951638_SNP [dm6]	G	C	6.078e^-4	1	INTRON CG42613 & 1 other
2R	7659782	2R_7659782_SNP [dm3] 2R_11772277_SNP [dm6]	T	A	6.079e^-4	1	INTRON ths
2L	7049913	2L_7049913_INS [dm3] 2L_7049913_INS [dm6]	G	GTCG	6.081e^-4	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17979345	3R_17979345_DEL [dm3] 3R_22153623_DEL [dm6]	CTCTGCTCAGCTTGA...	C	6.098e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens

Missing results

By genomic position
Variant impact
Gene name

Cuticul_NI_33 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results