DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.431e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.0754

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	9.6763	0.0079

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2218 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12254655	3L_12254655_SNP [dm3] 3L_12261555_SNP [dm6]	G	C	7.726e^-7	0.664	INTRON app
2R	14645040	2R_14645040_SNP [dm3] 2R_18757535_SNP [dm6]	T	A	9.814e^-7	0.664	DOWNSTREAM Jabba & 1 other INTRON Jabba
3R	20686245	3R_20686245_SNP [dm3] 3R_24860523_SNP [dm6]	T	C	1.617e^-6	0.664	UPSTREAM ppk22 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14645042	2R_14645042_SNP [dm3] 2R_18757537_SNP [dm6]	A	T	1.676e^-6	0.664	DOWNSTREAM Jabba & 1 other INTRON Jabba
2R	17686495	2R_17686495_SNP [dm3] 2R_21798990_SNP [dm6]	G	C	1.814e^-6	0.664	SYNONYMOUS_CODING CG18735 DOWNSTREAM CG4386	TF binding site mE1_TFBS_HSA
3L	2496106	3L_2496106_SNP [dm3] 3L_2496106_SNP [dm6]	G	A	2.129e^-6	0.664	SYNONYMOUS_CODING CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19305005	3R_19305005_SNP [dm3] 3R_23479283_SNP [dm6]	A	G	2.742e^-6	0.664	INTERGENIC
2R	18436241	2R_18436241_SNP [dm3] 2R_22548736_SNP [dm6]	G	A	3.149e^-6	0.664	INTRON px
3R	4375857	3R_4375857_SNP [dm3] 3R_8550135_SNP [dm6]	C	T	3.752e^-6	0.664	INTERGENIC
3R	24358583	3R_24358583_SNP [dm3] 3R_28532861_SNP [dm6]	A	G	3.892e^-6	0.664	INTRON Ppn	TF binding site BDTNP1_TFBS_twi
3R	24358971	3R_24358971_SNP [dm3] 3R_28533249_SNP [dm6]	C	T	4.079e^-6	0.664	INTRON Ppn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11012271	2L_11012271_SNP [dm3] 2L_11012271_SNP [dm6]	T	G	4.539e^-6	0.664	DOWNSTREAM dUTPase & 1 other INTERGENIC
2R	14645630	2R_14645630_SNP [dm3] 2R_18758125_SNP [dm6]	G	A	4.778e^-6	0.664	SPLICE_SITE_REGION Jabba SYNONYMOUS_CODING Jabba DOWNSTREAM Jabba INTRON Jabba
2R	17685377	2R_17685377_SNP [dm3] 2R_21797872_SNP [dm6]	G	A	5.108e^-6	0.664	DOWNSTREAM CG34204 & 1 other INTERGENIC
2L	7568477	2L_7568477_SNP [dm3] 2L_7568477_SNP [dm6]	C	A	5.307e^-6	0.664	INTRON RapGAP1
2R	12327083	2R_12327083_SNP [dm3] 2R_16439578_SNP [dm6]	G	A	6.032e^-6	0.707	INTERGENIC
2R	14626901	2R_14626901_SNP [dm3] 2R_18739396_SNP [dm6]	G	T	7.190e^-6	0.767	DOWNSTREAM CG33998 INTRON Hs3st-A EXON CR30121
3R	2611897	3R_2611897_SNP [dm3] 3R_6786175_SNP [dm6]	T	A	8.181e^-6	0.767	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	758702	3L_758702_SNP [dm3] 3L_758702_SNP [dm6]	G	A	1.013e^-5	0.767	INTERGENIC
3R	19304781	3R_19304781_SNP [dm3] 3R_23479059_SNP [dm6]	G	T	1.077e^-5	0.767	INTERGENIC
3R	6959307	3R_6959307_SNP [dm3] 3R_11133585_SNP [dm6]	A	T	1.149e^-5	0.767	INTERGENIC
2R	14892859	2R_14892859_SNP [dm3] 2R_19005354_SNP [dm6]	C	T	1.157e^-5	0.767	INTRON tn
2L	1696470	2L_1696470_SNP [dm3] 2L_1696470_SNP [dm6]	C	A	1.162e^-5	0.767	SYNONYMOUS_CODING chinmo UTR_3_PRIME chinmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10227446	3R_10227446_SNP [dm3] 3R_14401724_SNP [dm6]	A	T	1.251e^-5	0.767	INTRON cv-c
2L	4415544	2L_4415544_SNP [dm3] 2L_4415544_SNP [dm6]	G	C	1.252e^-5	0.767	INTRON CG15431
3R	12236478	3R_12236478_SNP [dm3] 3R_16410756_SNP [dm6]	C	G	1.306e^-5	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9453404	2R_9453404_SNP [dm3] 2R_13565899_SNP [dm6]	G	A	1.351e^-5	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	12254733	3L_12254733_SNP [dm3] 3L_12261633_SNP [dm6]	C	G	1.361e^-5	0.767	INTRON app
3L	9758551	3L_9758551_SNP [dm3] 3L_9765451_SNP [dm6]	T	A	1.530e^-5	0.767	INTRON CG8177
3L	4062966	3L_4062966_SNP [dm3] 3L_4062966_SNP [dm6]	C	T	1.535e^-5	0.767	INTRON dib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4063021	3L_4063021_SNP [dm3] 3L_4063021_SNP [dm6]	T	C	1.535e^-5	0.767	INTRON dib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12254736	3L_12254736_SNP [dm3] 3L_12261636_SNP [dm6]	G	T	1.593e^-5	0.767	INTRON app
2R	14647343	2R_14647343_SNP [dm3] 2R_18759838_SNP [dm6]	A	T	1.602e^-5	0.767	INTRON Jabba
3R	9619209	3R_9619209_SNP [dm3] 3R_13793487_SNP [dm6]	A	T	1.669e^-5	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16934864	3R_16934864_SNP [dm3] 3R_21109142_SNP [dm6]	T	A	1.722e^-5	0.767	INTRON rtet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4959573	3L_4959573_SNP [dm3] 3L_4959573_SNP [dm6]	G	A	1.736e^-5	0.767	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12168704	2R_12168704_SNP [dm3] 2R_16281199_SNP [dm6]	C	T	1.796e^-5	0.767	NON_SYNONYMOUS_CODING CG15705 DOWNSTREAM CG15704 & 1 other
2L	8301441	2L_8301441_DEL [dm3] 2L_8301441_DEL [dm6]	TT	T	1.830e^-5	0.767	UTR_3_PRIME wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12168708	2R_12168708_SNP [dm3] 2R_16281203_SNP [dm6]	C	T	1.848e^-5	0.767	NON_SYNONYMOUS_CODING CG15705 DOWNSTREAM CG15704 & 1 other
3L	9607020	3L_9607020_SNP [dm3] 3L_9613920_SNP [dm6]	G	C	1.849e^-5	0.767	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	11840183	3R_11840183_SNP [dm3] 3R_16014461_SNP [dm6]	A	C	1.906e^-5	0.767	INTRON GATAe
3L	9607244	3L_9607244_SNP [dm3] 3L_9614144_SNP [dm6]	T	C	1.964e^-5	0.767	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	9978492	3L_9978492_SNP [dm3] 3L_9985392_SNP [dm6]	G	A	1.980e^-5	0.767	INTRON dpr6
3R	2369436	3R_2369436_SNP [dm3] 3R_6543714_SNP [dm6]	A	T	1.980e^-5	0.767	INTRON dpr11	TF binding site mE1_TFBS_cad
3R	14945561	3R_14945561_SNP [dm3] 3R_19119839_SNP [dm6]	G	T	2.031e^-5	0.767	INTRON CG6040
2R	18508440	2R_18508440_SNP [dm3] 2R_22620935_SNP [dm6]	G	A	2.051e^-5	0.767	UTR_5_PRIME CG33143
3R	6959363	3R_6959363_SNP [dm3] 3R_11133641_SNP [dm6]	G	A	2.164e^-5	0.767	INTERGENIC
2L	8301530	2L_8301530_SNP [dm3] 2L_8301530_SNP [dm6]	G	C	2.178e^-5	0.767	UTR_3_PRIME wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	10182714	3L_10182714_SNP [dm3] 3L_10189614_SNP [dm6]	A	G	2.258e^-5	0.767	DOWNSTREAM ect INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	6714789	3L_6714789_SNP [dm3] 3L_6721689_SNP [dm6]	C	T	2.278e^-5	0.767	INTERGENIC
2L	12997176	2L_12997176_SNP [dm3] 2L_12997176_SNP [dm6]	G	A	2.326e^-5	0.767	INTRON CG12404
3R	16934875	3R_16934875_SNP [dm3] 3R_21109153_SNP [dm6]	C	T	2.339e^-5	0.767	INTRON rtet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17324082	2L_17324082_SNP [dm3] 2L_17324082_SNP [dm6]	A	T	2.368e^-5	0.767	INTERGENIC
3R	7760866	3R_7760866_SNP [dm3] 3R_11935144_SNP [dm6]	G	A	2.380e^-5	0.767	INTRON Cad87A
3L	3755942	3L_3755942_INS [dm3] 3L_3755942_INS [dm6]	A	ATTCACA	2.413e^-5	0.767	UPSTREAM ppk27 INTRON CG32264
X	21104994	X_21104994_SNP [dm3] X_21233967_SNP [dm6]	A	G	2.458e^-5	0.767	INTRON CG32521
3L	9607246	3L_9607246_SNP [dm3] 3L_9614146_SNP [dm6]	C	A	2.485e^-5	0.767	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	15915824	2L_15915824_SNP [dm3] 2L_15915824_SNP [dm6]	C	A	2.527e^-5	0.767	INTRON beat-Ib
2L	11952309	2L_11952309_SNP [dm3] 2L_11952309_SNP [dm6]	T	C	2.542e^-5	0.767	EXON CR43314
3R	5991101	3R_5991101_SNP [dm3] 3R_10165379_SNP [dm6]	G	C	2.795e^-5	0.767	SYNONYMOUS_CODING Best1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8302108	2L_8302108_SNP [dm3] 2L_8302108_SNP [dm6]	G	T	2.866e^-5	0.767	SYNONYMOUS_CODING wol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	20686062	3R_20686062_SNP [dm3] 3R_24860340_SNP [dm6]	G	A	2.884e^-5	0.767	UTR_5_PRIME CG13639 UPSTREAM ppk22	TF binding site mE1_TFBS_HSA
3L	7418389	3L_7418389_SNP [dm3] 3L_7425289_SNP [dm6]	A	G	2.963e^-5	0.767	INTRON CG42458
2L	9809585	2L_9809585_SNP [dm3] 2L_9809585_SNP [dm6]	C	T	2.982e^-5	0.767	INTRON nAChRalpha6
2R	12328065	2R_12328065_SNP [dm3] 2R_16440560_SNP [dm6]	C	A	3.022e^-5	0.767	INTERGENIC
X	20462923	X_20462923_SNP [dm3] X_20591896_SNP [dm6]	A	G	3.037e^-5	0.767	UTR_3_PRIME RunxA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9746808	3R_9746808_SNP [dm3] 3R_13921086_SNP [dm6]	T	A	3.040e^-5	0.767	INTERGENIC
2L	17782912	2L_17782912_SNP [dm3] 2L_17782912_SNP [dm6]	G	T	3.040e^-5	0.767	INTERGENIC
3R	2343205	3R_2343205_SNP [dm3] 3R_6517483_SNP [dm6]	A	G	3.109e^-5	0.767	INTERGENIC
2R	13958683	2R_13958683_SNP [dm3] 2R_18071178_SNP [dm6]	G	A	3.124e^-5	0.767	INTRON CG34386
3L	4959313	3L_4959313_SNP [dm3] 3L_4959313_SNP [dm6]	C	A	3.174e^-5	0.767	INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16897176	2R_16897176_SNP [dm3] 2R_21009671_SNP [dm6]	C	T	3.351e^-5	0.767	UPSTREAM CG30291 DOWNSTREAM grau INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20685482	3R_20685482_SNP [dm3] 3R_24859760_SNP [dm6]	T	G	3.403e^-5	0.767	UTR_5_PRIME ppk22 DOWNSTREAM CG13639
3L	4063015	3L_4063015_SNP [dm3] 3L_4063015_SNP [dm6]	T	C	3.424e^-5	0.767	INTRON dib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12327156	2R_12327156_SNP [dm3] 2R_16439651_SNP [dm6]	T	G	3.497e^-5	0.767	INTERGENIC
3L	394241	3L_394241_SNP [dm3] 3L_394241_SNP [dm6]	C	G	3.578e^-5	0.767	UPSTREAM CR45378 EXON CR43969
3R	2362109	3R_2362109_SNP [dm3] 3R_6536387_SNP [dm6]	G	A	3.580e^-5	0.767	INTRON dpr11	TF binding site mE1_TFBS_chinmo
2L	7608030	2L_7608030_SNP [dm3] 2L_7608030_SNP [dm6]	G	A	3.610e^-5	0.767	UPSTREAM CG6739 DOWNSTREAM Cyp4d21 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	2312576	3R_2312576_SNP [dm3] 3R_6486854_SNP [dm6]	T	A	3.627e^-5	0.767	UPSTREAM CG15186 INTRON CG15186
3R	14938384	3R_14938384_SNP [dm3] 3R_19112662_SNP [dm6]	G	A	3.737e^-5	0.767	INTRON CG6040
3R	11639217	3R_11639217_SNP [dm3] 3R_15813495_SNP [dm6]	T	C	3.797e^-5	0.767	INTRON alpha-Man-IIb
3L	4959654	3L_4959654_SNP [dm3] 3L_4959654_SNP [dm6]	A	G	3.839e^-5	0.767	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12328120	2R_12328120_SNP [dm3] 2R_16440615_SNP [dm6]	A	G	3.980e^-5	0.767	INTERGENIC
2L	10940487	2L_10940487_SNP [dm3] 2L_10940487_SNP [dm6]	G	A	4.037e^-5	0.767	INTRON dpr2
X	6306793	X_6306793_SNP [dm3] X_6412760_SNP [dm6]	G	A	4.104e^-5	0.767	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	758706	3L_758706_SNP [dm3] 3L_758706_SNP [dm6]	G	A	4.169e^-5	0.767	INTERGENIC
2L	10428979	2L_10428979_SNP [dm3] 2L_10428979_SNP [dm6]	C	A	4.211e^-5	0.767	SPLICE_SITE_REGION CG5188 DOWNSTREAM KdelR & 1 other INTRON CG5188	TF binding site BDTNP1_TFBS_dl
3R	6350003	3R_6350003_SNP [dm3] 3R_10524281_SNP [dm6]	C	T	4.237e^-5	0.767	INTRON hth
3R	12136326	3R_12136326_SNP [dm3] 3R_16310604_SNP [dm6]	C	T	4.274e^-5	0.767	UTR_3_PRIME Sulf1
3R	19304643	3R_19304643_SNP [dm3] 3R_23478921_SNP [dm6]	T	A	4.282e^-5	0.767	INTERGENIC
3R	4369107	3R_4369107_SNP [dm3] 3R_8543385_SNP [dm6]	T	G	4.313e^-5	0.767	INTERGENIC
2R	21067489	2R_21067489_SNP [dm3] 2R_25179966_SNP [dm6]	T	G	4.370e^-5	0.767	INTERGENIC	TF binding site mE1_TFBS_sens
2L	7568050	2L_7568050_SNP [dm3] 2L_7568050_SNP [dm6]	T	A	4.387e^-5	0.767	INTRON RapGAP1
2R	12328043	2R_12328043_SNP [dm3] 2R_16440538_SNP [dm6]	T	C	4.416e^-5	0.767	INTERGENIC
2L	17782908	2L_17782908_SNP [dm3] 2L_17782908_SNP [dm6]	C	A	4.507e^-5	0.767	INTERGENIC
3R	4369002	3R_4369002_SNP [dm3] 3R_8543280_SNP [dm6]	C	A	4.598e^-5	0.767	INTERGENIC
2R	10687943	2R_10687943_INS [dm3] 2R_14800438_INS [dm6]	C	CC	4.608e^-5	0.767	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	16725080	3L_16725080_SNP [dm3] 3L_16731980_SNP [dm6]	C	T	4.617e^-5	0.767	INTERGENIC
3L	4959607	3L_4959607_SNP [dm3] 3L_4959607_SNP [dm6]	G	T	4.741e^-5	0.767	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17424281	2L_17424281_SNP [dm3] 2L_17424281_SNP [dm6]	T	C	4.769e^-5	0.767	INTRON Dif
3L	4959657	3L_4959657_SNP [dm3] 3L_4959657_SNP [dm6]	G	A	4.906e^-5	0.767	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	1434511	X_1434511_SNP [dm3] X_1540478_SNP [dm6]	A	G	5.016e^-5	0.767	INTRON Mur2B
2R	14627009	2R_14627009_SNP [dm3] 2R_18739504_SNP [dm6]	A	T	5.028e^-5	0.767	DOWNSTREAM CG33998 INTRON Hs3st-A EXON CR30121
3R	12235957	3R_12235957_SNP [dm3] 3R_16410235_SNP [dm6]	T	G	5.063e^-5	0.767	INTERGENIC
2R	18037249	2R_18037249_SNP [dm3] 2R_22149744_SNP [dm6]	T	A	5.074e^-5	0.767	INTRON a
2R	18037250	2R_18037250_SNP [dm3] 2R_22149745_SNP [dm6]	C	A	5.074e^-5	0.767	INTRON a
3R	15473699	3R_15473699_SNP [dm3] 3R_19647977_SNP [dm6]	C	G	5.104e^-5	0.767	SYNONYMOUS_CODING CG6195 UPSTREAM CG31220	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12243708	3R_12243708_SNP [dm3] 3R_16417986_SNP [dm6]	C	T	5.107e^-5	0.767	INTERGENIC	regulatory region REDfly_CRMs
3L	4959622	3L_4959622_SNP [dm3] 3L_4959622_SNP [dm6]	A	G	5.177e^-5	0.767	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3764683	3L_3764683_SNP [dm3] 3L_3764683_SNP [dm6]	A	T	5.242e^-5	0.767	INTRON CG32264
2R	14643273	2R_14643273_SNP [dm3] 2R_18755768_SNP [dm6]	T	A	5.258e^-5	0.767	INTRON Cyp12b2
2L	2304715	2L_2304715_SNP [dm3] 2L_2304715_SNP [dm6]	T	A	5.266e^-5	0.767	INTERGENIC
X	7766525	X_7766525_SNP [dm3] X_7872492_SNP [dm6]	G	A	5.288e^-5	0.767	NON_SYNONYMOUS_CODING dec-1 UPSTREAM CR43615	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1441305	X_1441305_SNP [dm3] X_1547272_SNP [dm6]	C	A	5.302e^-5	0.767	INTRON Mur2B
3L	11705554	3L_11705554_SNP [dm3] 3L_11712454_SNP [dm6]	A	G	5.324e^-5	0.767	UTR_3_PRIME CG14132	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	13281509	2L_13281509_SNP [dm3] 2L_13281509_SNP [dm6]	A	G	5.435e^-5	0.767	SYNONYMOUS_CODING CG44085 INTRON CG44085
2L	13954266	2L_13954266_SNP [dm3] 2L_13954266_SNP [dm6]	G	A	5.468e^-5	0.767	INTRON Ance-3
3R	24237801	3R_24237801_SNP [dm3] 3R_28412079_SNP [dm6]	G	C	5.580e^-5	0.767	INTERGENIC
3R	6307160	3R_6307160_SNP [dm3] 3R_10481438_SNP [dm6]	C	A	5.586e^-5	0.767	INTERGENIC
3L	12469431	3L_12469431_SNP [dm3] 3L_12476331_SNP [dm6]	T	C	5.606e^-5	0.767	INTRON CG10663
3R	23021038	3R_23021038_SNP [dm3] 3R_27195316_SNP [dm6]	C	T	5.779e^-5	0.767	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	12328276	2R_12328276_SNP [dm3] 2R_16440771_SNP [dm6]	G	A	5.950e^-5	0.767	INTERGENIC
2L	15915829	2L_15915829_SNP [dm3] 2L_15915829_SNP [dm6]	T	A	5.964e^-5	0.767	INTRON beat-Ib
3L	18824273	3L_18824273_SNP [dm3] 3L_18831173_SNP [dm6]	G	A	5.976e^-5	0.767	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
X	20538434	X_20538434_SNP [dm3] X_20667407_SNP [dm6]	G	C	5.981e^-5	0.767	UPSTREAM CG1835 INTRON CG1835
3R	2362065	3R_2362065_SNP [dm3] 3R_6536343_SNP [dm6]	C	A	5.982e^-5	0.767	INTRON dpr11
3R	2356636	3R_2356636_INS [dm3] 3R_6530914_INS [dm6]	A	ATAGA	6.023e^-5	0.767	UTR_3_PRIME dpr11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5947927	3L_5947927_SNP [dm3] 3L_5954827_SNP [dm6]	A	T	6.069e^-5	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	2364871	3R_2364871_SNP [dm3] 3R_6539149_SNP [dm6]	G	A	6.092e^-5	0.767	INTRON dpr11
3R	19304764	3R_19304764_SNP [dm3] 3R_23479042_SNP [dm6]	A	G	6.131e^-5	0.767	INTERGENIC
X	19961084	X_19961084_SNP [dm3] X_20067051_SNP [dm6]	A	G	6.258e^-5	0.767	INTERGENIC
3L	9985160	3L_9985160_SNP [dm3] 3L_9992060_SNP [dm6]	C	T	6.281e^-5	0.767	INTRON dpr6
3L	13263976	3L_13263976_SNP [dm3] 3L_13270876_SNP [dm6]	C	T	6.291e^-5	0.767	INTRON caps
2R	13183128	2R_13183128_SNP [dm3] 2R_17295623_SNP [dm6]	T	C	6.305e^-5	0.767	INTRON mbl
3L	8224589	3L_8224589_SNP [dm3] 3L_8231489_SNP [dm6]	C	G	6.351e^-5	0.767	DOWNSTREAM eIF4E-3 & 1 other EXON CR43953
3L	4520479	3L_4520479_SNP [dm3] 3L_4520479_SNP [dm6]	A	G	6.398e^-5	0.767	INTRON Tie
X	18640160	X_18640160_SNP [dm3] X_18746127_SNP [dm6]	C	A	6.553e^-5	0.767	DOWNSTREAM CG12609 INTERGENIC	TF binding site mE1_TFBS_inv
3R	2515731	3R_2515731_SNP [dm3] 3R_6690009_SNP [dm6]	G	A	6.553e^-5	0.767	SYNONYMOUS_CODING Ccp84Af DOWNSTREAM Ccp84Ae
2R	19483686	2R_19483686_SNP [dm3] 2R_23596163_SNP [dm6]	A	C	6.560e^-5	0.767	UPSTREAM apt INTRON apt
3R	11639233	3R_11639233_SNP [dm3] 3R_15813511_SNP [dm6]	A	G	6.572e^-5	0.767	INTRON alpha-Man-IIb
3L	1436165	3L_1436165_SNP [dm3] 3L_1436165_SNP [dm6]	G	A	6.633e^-5	0.767	NON_SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24296178	3R_24296178_SNP [dm3] 3R_28470456_SNP [dm6]	A	C	6.661e^-5	0.767	INTRON beat-VI	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18869500	2R_18869500_SNP [dm3] 2R_22981977_SNP [dm6]	G	A	6.686e^-5	0.767	DOWNSTREAM CG32834 INTERGENIC
3L	4959580	3L_4959580_SNP [dm3] 3L_4959580_SNP [dm6]	C	G	6.693e^-5	0.767	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4959590	3L_4959590_SNP [dm3] 3L_4959590_SNP [dm6]	A	G	6.693e^-5	0.767	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13289567	2R_13289567_SNP [dm3] 2R_17402062_SNP [dm6]	C	T	6.781e^-5	0.767	INTRON Sip1
3L	1463021	3L_1463021_SNP [dm3] 3L_1463021_SNP [dm6]	A	G	6.814e^-5	0.767	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	1436343	3L_1436343_SNP [dm3] 3L_1436343_SNP [dm6]	A	T	6.814e^-5	0.767	NON_SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2353241	3R_2353241_SNP [dm3] 3R_6527519_SNP [dm6]	A	G	6.826e^-5	0.767	START_GAINED CG15185 UTR_5_PRIME CG15185
3L	3755925	3L_3755925_SNP [dm3] 3L_3755925_SNP [dm6]	A	G	6.860e^-5	0.767	UPSTREAM ppk27 INTRON CG32264
2R	12133033	2R_12133033_SNP [dm3] 2R_16245528_SNP [dm6]	A	C	6.881e^-5	0.767	INTRON CngA
3R	2347361	3R_2347361_SNP [dm3] 3R_6521639_SNP [dm6]	A	T	6.932e^-5	0.767	INTERGENIC
3R	19304640	3R_19304640_SNP [dm3] 3R_23478918_SNP [dm6]	C	T	6.940e^-5	0.767	INTERGENIC
2L	1696461	2L_1696461_SNP [dm3] 2L_1696461_SNP [dm6]	G	C	6.945e^-5	0.767	SYNONYMOUS_CODING chinmo UTR_3_PRIME chinmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22941943	3R_22941943_SNP [dm3] 3R_27116221_SNP [dm6]	C	T	6.947e^-5	0.767	SYNONYMOUS_CODING CG6066 UPSTREAM CG5880	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2474670	3L_2474670_SNP [dm3] 3L_2474670_SNP [dm6]	G	T	6.954e^-5	0.767	UTR_3_PRIME CG16762 INTRON CG45186
2R	15563747	2R_15563747_SNP [dm3] 2R_19676242_SNP [dm6]	A	G	7.001e^-5	0.767	INTERGENIC	TF binding site mE1_TFBS_cad
3R	13129880	3R_13129880_SNP [dm3] 3R_17304158_SNP [dm6]	C	A	7.057e^-5	0.767	INTERGENIC
3L	13264288	3L_13264288_SNP [dm3] 3L_13271188_SNP [dm6]	C	G	7.082e^-5	0.767	INTRON caps
3R	4379984	3R_4379984_SNP [dm3] 3R_8554262_SNP [dm6]	A	C	7.126e^-5	0.767	DOWNSTREAM Or85d INTERGENIC
3L	14777089	3L_14777089_SNP [dm3] 3L_14783989_SNP [dm6]	C	A	7.257e^-5	0.767	INTRON bmm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17262486	2R_17262486_SNP [dm3] 2R_21374981_SNP [dm6]	C	T	7.273e^-5	0.767	INTRON cv-2
3L	8207164	3L_8207164_SNP [dm3] 3L_8214064_SNP [dm6]	A	C	7.310e^-5	0.767	DOWNSTREAM CG8006 INTERGENIC
3R	19304575	3R_19304575_SNP [dm3] 3R_23478853_SNP [dm6]	C	T	7.463e^-5	0.767	INTERGENIC
3R	20685534	3R_20685534_SNP [dm3] 3R_24859812_SNP [dm6]	G	A	7.483e^-5	0.767	UPSTREAM ppk22 DOWNSTREAM CG13639 INTERGENIC
3R	11863987	3R_11863987_SNP [dm3] 3R_16038265_SNP [dm6]	C	T	7.500e^-5	0.767	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3052577	3L_3052577_SNP [dm3] 3L_3052577_SNP [dm6]	G	C	7.526e^-5	0.767	UTR_5_PRIME CG1271 UPSTREAM CG1271 DOWNSTREAM CG32485	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19364501	2L_19364501_SNP [dm3] 2L_19364501_SNP [dm6]	G	A	7.545e^-5	0.767	SYNONYMOUS_CODING CG13086
3L	3260896	3L_3260896_SNP [dm3] 3L_3260896_SNP [dm6]	C	G	7.580e^-5	0.767	INTRON ckd
3R	10296228	3R_10296228_SNP [dm3] 3R_14470506_SNP [dm6]	T	C	7.624e^-5	0.767	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14641630	2R_14641630_SNP [dm3] 2R_18754125_SNP [dm6]	G	T	7.659e^-5	0.767	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2
3L	18571112	3L_18571112_SNP [dm3] 3L_18578012_SNP [dm6]	A	G	7.701e^-5	0.767	INTERGENIC
3R	12235974	3R_12235974_SNP [dm3] 3R_16410252_SNP [dm6]	T	A	7.706e^-5	0.767	INTERGENIC
3L	13264137	3L_13264137_SNP [dm3] 3L_13271037_SNP [dm6]	C	T	7.715e^-5	0.767	INTRON caps
3R	19304720	3R_19304720_SNP [dm3] 3R_23478998_SNP [dm6]	C	A	7.727e^-5	0.767	INTERGENIC
2R	14626702	2R_14626702_SNP [dm3] 2R_18739197_SNP [dm6]	T	C	7.732e^-5	0.767	DOWNSTREAM CG33998 INTRON Hs3st-A EXON CR30121
2R	2146618	2R_2146618_SNP [dm3] 2R_6259113_SNP [dm6]	G	A	7.787e^-5	0.767	INTERGENIC	transposable element FlyBase
3R	19304632	3R_19304632_SNP [dm3] 3R_23478910_SNP [dm6]	C	T	7.804e^-5	0.767	INTERGENIC
2L	10926114	2L_10926114_SNP [dm3] 2L_10926114_SNP [dm6]	A	G	7.811e^-5	0.767	INTRON dpr2
2R	13151992	2R_13151992_SNP [dm3] 2R_17264487_SNP [dm6]	G	A	7.815e^-5	0.767	INTRON mbl	TF binding site BDTNP1_TFBS_z
2R	17843708	2R_17843708_SNP [dm3] 2R_21956203_SNP [dm6]	C	A	7.835e^-5	0.767	INTERGENIC
3L	3568004	3L_3568004_SNP [dm3] 3L_3568004_SNP [dm6]	A	C	7.841e^-5	0.767	INTRON Eip63E	TF binding site mE1_TFBS_bab1
3R	23799462	3R_23799462_SNP [dm3] 3R_27973740_SNP [dm6]	G	C	7.842e^-5	0.767	INTRON betaTub97EF
2L	9469433	2L_9469433_SNP [dm3] 2L_9469433_SNP [dm6]	C	T	7.904e^-5	0.767	UPSTREAM CR43769 INTERGENIC
3L	18208348	3L_18208348_SNP [dm3] 3L_18215248_SNP [dm6]	T	C	7.931e^-5	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	7215596	3R_7215596_SNP [dm3] 3R_11389874_SNP [dm6]	T	C	7.964e^-5	0.767	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	11665139	3R_11665139_SNP [dm3] 3R_15839417_SNP [dm6]	A	G	8.039e^-5	0.767	UTR_5_PRIME Pbp45 INTRON spn-E	TF binding site mE1_TFBS_cad
X	866773	X_866773_SNP [dm3] X_972740_SNP [dm6]	G	T	8.051e^-5	0.767	INTERGENIC
3L	5947924	3L_5947924_SNP [dm3] 3L_5954824_SNP [dm6]	A	T	8.150e^-5	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14806758	2R_14806758_SNP [dm3] 2R_18919253_SNP [dm6]	T	C	8.201e^-5	0.767	INTRON sano
3R	12896857	3R_12896857_SNP [dm3] 3R_17071135_SNP [dm6]	C	T	8.215e^-5	0.767	NON_SYNONYMOUS_CODING Ns1 DOWNSTREAM Dad
2L	17324057	2L_17324057_SNP [dm3] 2L_17324057_SNP [dm6]	G	T	8.247e^-5	0.767	INTERGENIC
3R	7678040	3R_7678040_SNP [dm3] 3R_11852318_SNP [dm6]	T	A	8.313e^-5	0.767	INTRON CG6959
3R	12243811	3R_12243811_SNP [dm3] 3R_16418089_SNP [dm6]	A	T	8.377e^-5	0.767	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	4134131	X_4134131_SNP [dm3] X_4240098_SNP [dm6]	C	T	8.434e^-5	0.767	INTERGENIC
2R	18411123	2R_18411123_SNP [dm3] 2R_22523618_SNP [dm6]	C	T	8.457e^-5	0.767	INTRON px	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15563725	2R_15563725_SNP [dm3] 2R_19676220_SNP [dm6]	G	C	8.638e^-5	0.767	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2474736	3L_2474736_SNP [dm3] 3L_2474736_SNP [dm6]	T	C	8.671e^-5	0.767	UTR_3_PRIME CG16762 INTRON CG45186
3R	2352103	3R_2352103_SNP [dm3] 3R_6526381_SNP [dm6]	T	C	8.685e^-5	0.767	INTERGENIC
3L	9758656	3L_9758656_SNP [dm3] 3L_9765556_SNP [dm6]	T	A	8.750e^-5	0.767	INTRON CG8177
2L	11296297	2L_11296297_SNP [dm3] 2L_11296297_SNP [dm6]	A	T	8.761e^-5	0.767	INTERGENIC
3R	13669421	3R_13669421_SNP [dm3] 3R_17843699_SNP [dm6]	C	A	8.794e^-5	0.767	INTRON tinc
3R	20686458	3R_20686458_SNP [dm3] 3R_24860736_SNP [dm6]	C	T	8.815e^-5	0.767	UPSTREAM ppk22 & 1 other DOWNSTREAM CG13640 INTERGENIC
X	864632	X_864632_SNP [dm3] X_970599_SNP [dm6]	A	T	8.833e^-5	0.767	INTERGENIC
2L	15943946	2L_15943946_SNP [dm3] 2L_15943946_SNP [dm6]	C	T	8.869e^-5	0.767	INTRON beat-Ib
2R	19486204	2R_19486204_SNP [dm3] 2R_23598681_SNP [dm6]	G	A	8.886e^-5	0.767	UTR_3_PRIME apt DOWNSTREAM CG42559 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8194981	3R_8194981_DEL [dm3] 3R_12369259_DEL [dm6]	ACTGAACGGAATTCGAAGAG...	A	8.935e^-5	0.767	UTR_5_PRIME GstD1 UPSTREAM GstD1 INTRAGENIC GstD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13357040	X_13357040_SNP [dm3] X_13463007_SNP [dm6]	A	C	8.941e^-5	0.767	INTRON Neto
2R	14647138	2R_14647138_SNP [dm3] 2R_18759633_SNP [dm6]	A	C	8.957e^-5	0.767	INTRON Jabba
3R	20610616	3R_20610616_SNP [dm3] 3R_24784894_SNP [dm6]	G	A	8.967e^-5	0.767	UTR_3_PRIME CG5805 DOWNSTREAM CG42331
X	18417498	X_18417498_SNP [dm3] X_18523465_SNP [dm6]	T	C	8.982e^-5	0.767	INTRON Bx	TF binding site BDTNP1_TFBS_dl
3L	3755963	3L_3755963_SNP [dm3] 3L_3755963_SNP [dm6]	T	C	9.015e^-5	0.767	UPSTREAM ppk27 INTRON CG32264
3R	6508839	3R_6508839_SNP [dm3] 3R_10683117_SNP [dm6]	C	T	9.174e^-5	0.767	INTRON CR44230	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20045267	X_20045267_SNP [dm3] X_20151234_SNP [dm6]	G	T	9.184e^-5	0.767	INTRON CG9572
2L	13946198	2L_13946198_SNP [dm3] 2L_13946198_SNP [dm6]	G	T	9.279e^-5	0.767	INTRON Ance-3 & 1 other
3L	3607107	3L_3607107_SNP [dm3] 3L_3607107_SNP [dm6]	A	G	9.298e^-5	0.767	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	10601328	3R_10601328_SNP [dm3] 3R_14775606_SNP [dm6]	A	T	9.304e^-5	0.767	INTRON jvl
3R	9878447	3R_9878447_SNP [dm3] 3R_14052725_SNP [dm6]	C	G	9.393e^-5	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2347231	2L_2347231_SNP [dm3] 2L_2347231_SNP [dm6]	A	G	9.410e^-5	0.767	INTRON CG9967 & 1 other
3R	12131824	3R_12131824_SNP [dm3] 3R_16306102_SNP [dm6]	C	T	9.453e^-5	0.767	START_GAINED Zip89B UTR_5_PRIME Zip89B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10601332	3R_10601332_SNP [dm3] 3R_14775610_SNP [dm6]	T	G	9.495e^-5	0.767	INTRON jvl
2R	14806748	2R_14806748_SNP [dm3] 2R_18919243_SNP [dm6]	T	A	9.529e^-5	0.767	INTRON sano
X	20045232	X_20045232_SNP [dm3] X_20151199_SNP [dm6]	G	T	9.589e^-5	0.767	INTRON CG9572
2R	17843694	2R_17843694_DEL [dm3] 2R_21956189_DEL [dm6]	TGCT	T	9.637e^-5	0.767	INTERGENIC
2L	3647807	2L_3647807_SNP [dm3] 2L_3647807_SNP [dm6]	A	C	9.638e^-5	0.767	INTRON for
2L	8977271	2L_8977271_SNP [dm3] 2L_8977271_SNP [dm6]	A	G	9.642e^-5	0.767	DOWNSTREAM CG13101 INTERGENIC
3R	4391378	3R_4391378_SNP [dm3] 3R_8565656_SNP [dm6]	G	C	9.707e^-5	0.767	NON_SYNONYMOUS_CODING Cenp-C	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	3194864	3L_3194864_SNP [dm3] 3L_3194864_SNP [dm6]	C	T	9.726e^-5	0.767	SYNONYMOUS_CODING Hsp83	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18856081	2R_18856081_INS [dm3] 2R_22968558_INS [dm6]	T	TGT	9.767e^-5	0.767	INTERGENIC
X	861006	X_861006_SNP [dm3] X_966973_SNP [dm6]	G	A	9.860e^-5	0.767	INTERGENIC
X	864746	X_864746_SNP [dm3] X_970713_SNP [dm6]	A	G	9.860e^-5	0.767	INTERGENIC
X	20944725	X_20944725_SNP [dm3] X_21073698_SNP [dm6]	T	G	9.939e^-5	0.767	INTRON bves
X	864077	X_864077_SNP [dm3] X_970044_SNP [dm6]	C	T	9.953e^-5	0.767	INTERGENIC
X	1441298	X_1441298_INS [dm3] X_1547265_INS [dm6]	A	ATCCCAAC	1.002e^-4	0.767	INTRON Mur2B
2R	4912228	2R_4912228_SNP [dm3] 2R_9024723_SNP [dm6]	A	G	1.003e^-4	0.767	INTRON CG8170	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7568330	2L_7568330_SNP [dm3] 2L_7568330_SNP [dm6]	A	G	1.004e^-4	0.767	INTRON RapGAP1
3L	18387290	3L_18387290_INS [dm3] 3L_18394190_INS [dm6]	A	AGGGCC	1.009e^-4	0.767	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5838267	3R_5838267_SNP [dm3] 3R_10012545_SNP [dm6]	A	G	1.010e^-4	0.767	NON_SYNONYMOUS_CODING Mical INTRON Mical
2R	6957609	2R_6957609_SNP [dm3] 2R_11070104_SNP [dm6]	C	T	1.011e^-4	0.767	INTRON luna	TF binding site BDTNP1_TFBS_dl
2L	15962845	2L_15962845_SNP [dm3] 2L_15962845_SNP [dm6]	C	A	1.012e^-4	0.767	UPSTREAM beat-Ib INTERGENIC
3R	16934813	3R_16934813_DEL [dm3] 3R_21109091_DEL [dm6]	CACTAAAC	C	1.013e^-4	0.767	INTRON rtet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10421885	3R_10421885_SNP [dm3] 3R_14596163_SNP [dm6]	C	T	1.015e^-4	0.767	UPSTREAM stumps INTRON stumps	TF binding site BDTNP1_TFBS_dl
2R	17685745	2R_17685745_SNP [dm3] 2R_21798240_SNP [dm6]	A	T	1.017e^-4	0.767	NON_SYNONYMOUS_CODING CG18735	TF binding site mE1_TFBS_chinmo
2L	1520639	2L_1520639_SNP [dm3] 2L_1520639_SNP [dm6]	A	T	1.021e^-4	0.767	SYNONYMOUS_CODING Or22a UPSTREAM CG44072
3L	9958346	3L_9958346_SNP [dm3] 3L_9965246_SNP [dm6]	A	C	1.024e^-4	0.767	UTR_3_PRIME CG34356
3R	19304727	3R_19304727_SNP [dm3] 3R_23479005_SNP [dm6]	A	C	1.027e^-4	0.767	INTERGENIC
2R	3737279	2R_3737279_SNP [dm3] 2R_7849774_SNP [dm6]	G	A	1.028e^-4	0.767	INTRON Dgk	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20320279	X_20320279_SNP [dm3] X_20449252_SNP [dm6]	G	A	1.036e^-4	0.767	UPSTREAM CG32506 INTERGENIC
X	863471	X_863471_SNP [dm3] X_969438_SNP [dm6]	G	T	1.038e^-4	0.767	UPSTREAM CR45476 INTERGENIC
3L	3755798	3L_3755798_SNP [dm3] 3L_3755798_SNP [dm6]	C	G	1.047e^-4	0.767	UPSTREAM ppk27 INTRON CG32264
X	864783	X_864783_SNP [dm3] X_970750_SNP [dm6]	C	A	1.048e^-4	0.767	INTERGENIC
2R	19483683	2R_19483683_SNP [dm3] 2R_23596160_SNP [dm6]	A	G	1.052e^-4	0.767	UPSTREAM apt INTRON apt
2L	17782825	2L_17782825_SNP [dm3] 2L_17782825_SNP [dm6]	A	T	1.054e^-4	0.767	INTERGENIC
2R	13788327	2R_13788327_SNP [dm3] 2R_17900822_SNP [dm6]	C	T	1.064e^-4	0.767	INTRON Elk
X	19445624	X_19445624_INS [dm3] X_19551591_INS [dm6]	A	AA	1.064e^-4	0.767	UPSTREAM mir-974 DOWNSTREAM mir-972 & 1 other EXON mir-973
3L	18824762	3L_18824762_SNP [dm3] 3L_18831662_SNP [dm6]	G	A	1.072e^-4	0.767	INTRON Indy
3R	25667857	3R_25667857_SNP [dm3] 3R_29842135_SNP [dm6]	C	T	1.074e^-4	0.767	INTRON Cad99C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	25667859	3R_25667859_SNP [dm3] 3R_29842137_SNP [dm6]	C	T	1.074e^-4	0.767	INTRON Cad99C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	10229977	3R_10229977_INS [dm3] 3R_14404255_INS [dm6]	T	CATG	1.086e^-4	0.767	INTRON cv-c
3R	10227278	3R_10227278_SNP [dm3] 3R_14401556_SNP [dm6]	A	C	1.089e^-4	0.767	INTRON cv-c
3L	1436199	3L_1436199_SNP [dm3] 3L_1436199_SNP [dm6]	C	A	1.095e^-4	0.767	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	861100	X_861100_SNP [dm3] X_967067_SNP [dm6]	C	T	1.107e^-4	0.767	INTERGENIC
3R	6959170	3R_6959170_SNP [dm3] 3R_11133448_SNP [dm6]	C	T	1.108e^-4	0.767	INTERGENIC
3R	2312079	3R_2312079_SNP [dm3] 3R_6486357_SNP [dm6]	T	A	1.112e^-4	0.767	UPSTREAM CG15186 INTRON CG15186
2R	14646899	2R_14646899_SNP [dm3] 2R_18759394_SNP [dm6]	A	C	1.117e^-4	0.767	SYNONYMOUS_CODING Jabba
3R	6303618	3R_6303618_SNP [dm3] 3R_10477896_SNP [dm6]	A	G	1.117e^-4	0.767	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4959649	3L_4959649_SNP [dm3] 3L_4959649_SNP [dm6]	A	G	1.119e^-4	0.767	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1446021	2L_1446021_SNP [dm3] 2L_1446021_SNP [dm6]	C	A	1.121e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13762217	3L_13762217_SNP [dm3] 3L_13769117_SNP [dm6]	A	C	1.127e^-4	0.767	INTRON bru-3
3L	8746437	3L_8746437_SNP [dm3] 3L_8753337_SNP [dm6]	A	G	1.141e^-4	0.767	UPSTREAM Fhos INTERGENIC
3R	14755371	3R_14755371_SNP [dm3] 3R_18929649_SNP [dm6]	G	A	1.144e^-4	0.767	UPSTREAM Mpc1 INTRON CG42613	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8008142	3L_8008142_SNP [dm3] 3L_8015042_SNP [dm6]	A	G	1.145e^-4	0.767	INTRON nmo
3R	6961228	3R_6961228_SNP [dm3] 3R_11135506_SNP [dm6]	A	C	1.147e^-4	0.767	INTERGENIC
2R	14807740	2R_14807740_SNP [dm3] 2R_18920235_SNP [dm6]	T	C	1.148e^-4	0.767	INTRON sano
2L	2495800	2L_2495800_SNP [dm3] 2L_2495800_SNP [dm6]	C	A	1.154e^-4	0.767	SYNONYMOUS_CODING oaf
3R	4364789	3R_4364789_SNP [dm3] 3R_8539067_SNP [dm6]	C	T	1.159e^-4	0.767	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8114627	2R_8114627_SNP [dm3] 2R_12227122_SNP [dm6]	G	A	1.162e^-4	0.767	UPSTREAM CG8854 INTRON CG8854
3R	2364821	3R_2364821_SNP [dm3] 3R_6539099_SNP [dm6]	A	G	1.166e^-4	0.767	INTRON dpr11
3R	2659691	3R_2659691_SNP [dm3] 3R_6833969_SNP [dm6]	C	G	1.169e^-4	0.767	INTRON Scr	regulatory region REDfly_CRMs
2R	14643414	2R_14643414_SNP [dm3] 2R_18755909_SNP [dm6]	A	T	1.171e^-4	0.767	INTRON Cyp12b2
3L	2044248	3L_2044248_SNP [dm3] 3L_2044248_SNP [dm6]	C	T	1.173e^-4	0.767	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2515316	3L_2515316_INS [dm3] 3L_2515316_INS [dm6]	C	CAT	1.174e^-4	0.767	INTRON Spn
3R	14938383	3R_14938383_SNP [dm3] 3R_19112661_SNP [dm6]	G	A	1.176e^-4	0.767	INTRON CG6040
3R	12901942	3R_12901942_SNP [dm3] 3R_17076220_SNP [dm6]	T	C	1.191e^-4	0.767	INTRON Keap1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2353693	3R_2353693_SNP [dm3] 3R_6527971_SNP [dm6]	A	G	1.199e^-4	0.767	NON_SYNONYMOUS_CODING CG15185
3L	20212771	3L_20212771_SNP [dm3] 3L_20219671_SNP [dm6]	G	T	1.206e^-4	0.767	INTRON CG6933	TF binding site mE1_TFBS_cad
3R	6571734	3R_6571734_SNP [dm3] 3R_10746012_SNP [dm6]	C	T	1.206e^-4	0.767	INTRON TkR86C
3L	3443860	3L_3443860_INS [dm3] 3L_3443860_INS [dm6]	T	GA	1.209e^-4	0.767	INTRON eIF5B
3L	3443876	3L_3443876_SNP [dm3] 3L_3443876_SNP [dm6]	A	G	1.209e^-4	0.767	INTRON eIF5B
2R	13183194	2R_13183194_SNP [dm3] 2R_17295689_SNP [dm6]	C	A	1.210e^-4	0.767	INTRON mbl
2R	12812973	2R_12812973_SNP [dm3] 2R_16925468_SNP [dm6]	T	A	1.214e^-4	0.767	UTR_5_PRIME Pkc53E INTRON Pkc53E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20611253	3R_20611253_SNP [dm3] 3R_24785531_SNP [dm6]	C	T	1.220e^-4	0.767	SYNONYMOUS_CODING CG5805 DOWNSTREAM CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3052578	3L_3052578_SNP [dm3] 3L_3052578_SNP [dm6]	T	A	1.231e^-4	0.767	UTR_5_PRIME CG1271 UPSTREAM CG1271 DOWNSTREAM CG32485	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8246176	3R_8246176_SNP [dm3] 3R_12420454_SNP [dm6]	A	T	1.232e^-4	0.767	DOWNSTREAM Scgbeta INTRON pps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14829551	3R_14829551_INS [dm3] 3R_19003829_INS [dm6]	A	AAGAACCACT	1.235e^-4	0.767	INTRON gukh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18005605	3R_18005605_SNP [dm3] 3R_22179883_SNP [dm6]	T	C	1.236e^-4	0.767	INTRON SKIP
3L	14816511	3L_14816511_SNP [dm3] 3L_14823411_SNP [dm6]	A	G	1.236e^-4	0.767	INTRON CG17839
3R	19304650	3R_19304650_SNP [dm3] 3R_23478928_SNP [dm6]	A	G	1.239e^-4	0.767	INTERGENIC
3R	2341910	3R_2341910_SNP [dm3] 3R_6516188_SNP [dm6]	A	T	1.244e^-4	0.767	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8324558	2L_8324558_INS [dm3] 2L_8324558_INS [dm6]	C	CTCCTGCT	1.246e^-4	0.767	INTRON CG7781
3R	12235901	3R_12235901_SNP [dm3] 3R_16410179_SNP [dm6]	G	A	1.252e^-4	0.767	INTERGENIC
3L	6284714	3L_6284714_SNP [dm3] 3L_6291614_SNP [dm6]	T	A	1.258e^-4	0.767	INTERGENIC
2R	19608292	2R_19608292_SNP [dm3] 2R_23720769_SNP [dm6]	T	A	1.267e^-4	0.767	UPSTREAM CG18128 INTRON Sesn EXON CR45325
2R	8877407	2R_8877407_SNP [dm3] 2R_12989902_SNP [dm6]	C	T	1.268e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17365005	3L_17365005_SNP [dm3] 3L_17371905_SNP [dm6]	C	T	1.275e^-4	0.767	SYNONYMOUS_CODING Cad74A
3R	18004488	3R_18004488_SNP [dm3] 3R_22178766_SNP [dm6]	C	G	1.277e^-4	0.767	INTRON SKIP
3R	21444081	3R_21444081_SNP [dm3] 3R_25618359_SNP [dm6]	C	T	1.278e^-4	0.767	UPSTREAM CG5071 INTRON Npl4
2L	10534488	2L_10534488_SNP [dm3] 2L_10534488_SNP [dm6]	A	T	1.282e^-4	0.767	UTR_5_PRIME CG18302 DOWNSTREAM CG18301
3R	18437230	3R_18437230_SNP [dm3] 3R_22611508_SNP [dm6]	A	T	1.286e^-4	0.767	DOWNSTREAM CG13843 INTRON CG31156
3R	19575970	3R_19575970_SNP [dm3] 3R_23750248_SNP [dm6]	C	T	1.292e^-4	0.767	SYNONYMOUS_CODING Hmgcr DOWNSTREAM RanBP3	TF binding site mE1_TFBS_cad
3R	19304634	3R_19304634_SNP [dm3] 3R_23478912_SNP [dm6]	T	A	1.306e^-4	0.767	INTERGENIC
3R	6867604	3R_6867604_SNP [dm3] 3R_11041882_SNP [dm6]	A	T	1.307e^-4	0.767	INTRON CG34114
3L	890857	3L_890857_SNP [dm3] 3L_890857_SNP [dm6]	T	C	1.308e^-4	0.767	SPLICE_SITE_REGION CG32479 UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9962352	3R_9962352_SNP [dm3] 3R_14136630_SNP [dm6]	G	A	1.309e^-4	0.767	INTERGENIC
2L	20027527	2L_20027527_DEL [dm3] 2L_20027527_DEL [dm6]	AA	A	1.309e^-4	0.767	UPSTREAM sNPF INTERGENIC	TF binding site mE1_TFBS_cnc
3L	3193591	3L_3193591_DEL [dm3] 3L_3193591_DEL [dm6]	GG	G	1.323e^-4	0.767	INTRON Hsp83	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11913751	2L_11913751_SNP [dm3] 2L_11913751_SNP [dm6]	G	A	1.327e^-4	0.767	INTRON Pde1c
3R	2354994	3R_2354994_SNP [dm3] 3R_6529272_SNP [dm6]	G	C	1.331e^-4	0.767	UTR_3_PRIME dpr11 DOWNSTREAM CG15185
3R	22750326	3R_22750326_SNP [dm3] 3R_26924604_SNP [dm6]	A	T	1.332e^-4	0.767	INTRON sda
3R	19304648	3R_19304648_SNP [dm3] 3R_23478926_SNP [dm6]	G	A	1.334e^-4	0.767	INTERGENIC
3R	19304678	3R_19304678_SNP [dm3] 3R_23478956_SNP [dm6]	G	T	1.336e^-4	0.767	INTERGENIC
3R	4370437	3R_4370437_SNP [dm3] 3R_8544715_SNP [dm6]	T	C	1.350e^-4	0.767	UPSTREAM CR45575 INTERGENIC
3R	2343353	3R_2343353_SNP [dm3] 3R_6517631_SNP [dm6]	G	A	1.355e^-4	0.767	INTERGENIC
3L	1436198	3L_1436198_SNP [dm3] 3L_1436198_SNP [dm6]	C	T	1.365e^-4	0.767	NON_SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14455300	3L_14455300_SNP [dm3] 3L_14462200_SNP [dm6]	T	C	1.367e^-4	0.767	INTRON bbg
X	20320290	X_20320290_SNP [dm3] X_20449263_SNP [dm6]	C	A	1.369e^-4	0.767	UPSTREAM CG32506 INTERGENIC
2L	10758110	2L_10758110_SNP [dm3] 2L_10758110_SNP [dm6]	C	T	1.377e^-4	0.767	INTERGENIC
3R	2335201	3R_2335201_SNP [dm3] 3R_6509479_SNP [dm6]	G	A	1.379e^-4	0.767	INTERGENIC
3R	2246713	3R_2246713_SNP [dm3] 3R_6420991_SNP [dm6]	T	A	1.380e^-4	0.767	INTRON gpp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12243808	3R_12243808_SNP [dm3] 3R_16418086_SNP [dm6]	G	A	1.383e^-4	0.767	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	12499825	3L_12499825_SNP [dm3] 3L_12506725_SNP [dm6]	T	A	1.387e^-4	0.767	DOWNSTREAM vih INTRON CG10654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16063360	3L_16063360_SNP [dm3] 3L_16070260_SNP [dm6]	C	T	1.390e^-4	0.767	SYNONYMOUS_CODING Mbs UTR_3_PRIME Mbs
2R	12328273	2R_12328273_SNP [dm3] 2R_16440768_SNP [dm6]	A	G	1.390e^-4	0.767	INTERGENIC
2R	12328274	2R_12328274_SNP [dm3] 2R_16440769_SNP [dm6]	T	A	1.390e^-4	0.767	INTERGENIC
3L	4186580	3L_4186580_SNP [dm3] 3L_4186580_SNP [dm6]	C	T	1.393e^-4	0.767	SYNONYMOUS_CODING VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8114661	2R_8114661_SNP [dm3] 2R_12227156_SNP [dm6]	C	T	1.393e^-4	0.767	UPSTREAM CG8854 INTRON CG8854
2R	19829102	2R_19829102_SNP [dm3] 2R_23941579_SNP [dm6]	C	G	1.395e^-4	0.767	SYNONYMOUS_CODING Tal UPSTREAM Galphas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1433613	X_1433613_SNP [dm3] X_1539580_SNP [dm6]	A	G	1.399e^-4	0.767	INTRON Mur2B
3R	23906584	3R_23906584_INS [dm3] 3R_28080862_INS [dm6]	T	TT	1.403e^-4	0.767	INTRON CG34362
2R	14643981	2R_14643981_SNP [dm3] 2R_18756476_SNP [dm6]	C	G	1.405e^-4	0.767	SYNONYMOUS_CODING Cyp12b2 DOWNSTREAM Jabba
2R	19829108	2R_19829108_SNP [dm3] 2R_23941585_SNP [dm6]	C	T	1.406e^-4	0.767	SYNONYMOUS_CODING Tal UPSTREAM Galphas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8093885	2L_8093885_SNP [dm3] 2L_8093885_SNP [dm6]	T	A	1.408e^-4	0.767	INTRON Bsg	TF binding site BDTNP1_TFBS_twi
3L	3443867	3L_3443867_SNP [dm3] 3L_3443867_SNP [dm6]	C	T	1.409e^-4	0.767	INTRON eIF5B
2R	14892675	2R_14892675_SNP [dm3] 2R_19005170_SNP [dm6]	T	C	1.413e^-4	0.767	INTRON tn
3L	3272902	3L_3272902_SNP [dm3] 3L_3272902_SNP [dm6]	C	T	1.414e^-4	0.767	INTRON CG14960
3L	9817427	3L_9817427_SNP [dm3] 3L_9824327_SNP [dm6]	T	G	1.415e^-4	0.767	UPSTREAM Ilp5 INTRON CG43897
2R	12327922	2R_12327922_SNP [dm3] 2R_16440417_SNP [dm6]	G	T	1.425e^-4	0.77	INTERGENIC
3R	4109224	3R_4109224_SNP [dm3] 3R_8283502_SNP [dm6]	T	G	1.438e^-4	0.773	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
3R	4380072	3R_4380072_SNP [dm3] 3R_8554350_SNP [dm6]	G	A	1.450e^-4	0.773	DOWNSTREAM Or85d INTERGENIC
2L	16607546	2L_16607546_SNP [dm3] 2L_16607546_SNP [dm6]	T	C	1.468e^-4	0.773	SYNONYMOUS_CODING CG4631 DOWNSTREAM CG31815 INTRON CG42389
3L	3492191	3L_3492191_SNP [dm3] 3L_3492191_SNP [dm6]	G	A	1.475e^-4	0.773	INTRON CG42324
3R	12028105	3R_12028105_SNP [dm3] 3R_16202383_SNP [dm6]	T	A	1.477e^-4	0.773	UPSTREAM CG31287 INTRON CG6126	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7354246	2L_7354246_SNP [dm3] 2L_7354246_SNP [dm6]	A	G	1.479e^-4	0.773	INTERGENIC
3L	3195548	3L_3195548_SNP [dm3] 3L_3195548_SNP [dm6]	G	A	1.489e^-4	0.773	SYNONYMOUS_CODING Hsp83	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20944804	X_20944804_SNP [dm3] X_21073777_SNP [dm6]	C	T	1.494e^-4	0.773	INTRON bves
2L	10088402	2L_10088402_SNP [dm3] 2L_10088402_SNP [dm6]	G	A	1.494e^-4	0.773	INTRON CG44153	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10951585	3L_10951585_SNP [dm3] 3L_10958485_SNP [dm6]	A	G	1.498e^-4	0.773	UPSTREAM CR45248 INTERGENIC
2R	18858985	2R_18858985_SNP [dm3] 2R_22971462_SNP [dm6]	A	C	1.509e^-4	0.773	INTERGENIC
3R	14837790	3R_14837790_SNP [dm3] 3R_19012068_SNP [dm6]	T	A	1.520e^-4	0.773	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
3L	3196040	3L_3196040_SNP [dm3] 3L_3196040_SNP [dm6]	C	T	1.526e^-4	0.773	SYNONYMOUS_CODING Hsp83	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2353148	3R_2353148_SNP [dm3] 3R_6527426_SNP [dm6]	A	G	1.527e^-4	0.773	UPSTREAM CG15185 INTERGENIC
3R	13883789	3R_13883789_SNP [dm3] 3R_18058067_SNP [dm6]	T	A	1.535e^-4	0.773	INTERGENIC
2L	1922910	2L_1922910_SNP [dm3] 2L_1922910_SNP [dm6]	A	G	1.546e^-4	0.773	INTRON CG7337
3R	24270865	3R_24270865_SNP [dm3] 3R_28445143_SNP [dm6]	T	C	1.548e^-4	0.773	INTRON beat-VI
3L	3613501	3L_3613501_SNP [dm3] 3L_3613501_SNP [dm6]	C	A	1.548e^-4	0.773	INTRON CG10359
3R	12368797	3R_12368797_SNP [dm3] 3R_16543075_SNP [dm6]	T	C	1.550e^-4	0.773	INTRON CG42342
3R	26468386	3R_26468386_SNP [dm3] 3R_30642664_SNP [dm6]	A	G	1.552e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2240936	3L_2240936_SNP [dm3] 3L_2240936_SNP [dm6]	A	G	1.555e^-4	0.773	SYNONYMOUS_CODING ACXD	TF binding site mE1_TFBS_chinmo
X	10019452	X_10019452_SNP [dm3] X_10125419_SNP [dm6]	T	C	1.557e^-4	0.773	DOWNSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
2R	17686920	2R_17686920_SNP [dm3] 2R_21799415_SNP [dm6]	G	A	1.567e^-4	0.773	UTR_3_PRIME CG4386 UPSTREAM CG18735
3L	9607243	3L_9607243_SNP [dm3] 3L_9614143_SNP [dm6]	A	G	1.568e^-4	0.773	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	9607256	3L_9607256_SNP [dm3] 3L_9614156_SNP [dm6]	G	T	1.568e^-4	0.773	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	8114650	2R_8114650_SNP [dm3] 2R_12227145_SNP [dm6]	T	A	1.570e^-4	0.773	UPSTREAM CG8854 INTRON CG8854
3R	21499140	3R_21499140_SNP [dm3] 3R_25673418_SNP [dm6]	T	C	1.571e^-4	0.773	INTRON Lgr3
3R	2364886	3R_2364886_SNP [dm3] 3R_6539164_SNP [dm6]	A	C	1.576e^-4	0.773	INTRON dpr11
3R	2342131	3R_2342131_SNP [dm3] 3R_6516409_SNP [dm6]	T	C	1.590e^-4	0.773	INTERGENIC
3L	7229049	3L_7229049_SNP [dm3] 3L_7235949_SNP [dm6]	A	G	1.590e^-4	0.773	UTR_3_PRIME CG14826 DOWNSTREAM CG14826 & 1 other
3R	25525942	3R_25525942_SNP [dm3] 3R_29700220_SNP [dm6]	G	A	1.591e^-4	0.773	INTERGENIC	TF binding site mE1_TFBS_sens
2R	19968326	2R_19968326_SNP [dm3] 2R_24080803_SNP [dm6]	T	C	1.592e^-4	0.773	UPSTREAM CG13564 & 2 others INTERGENIC
3R	14912009	3R_14912009_SNP [dm3] 3R_19086287_SNP [dm6]	T	C	1.594e^-4	0.773	INTRON cdi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20942730	X_20942730_SNP [dm3] X_21071703_SNP [dm6]	T	C	1.597e^-4	0.773	INTRON bves	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10602565	3R_10602565_SNP [dm3] 3R_14776843_SNP [dm6]	C	T	1.601e^-4	0.773	INTRON jvl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10519741	3R_10519741_DEL [dm3] 3R_14694019_DEL [dm6]	AA	A	1.602e^-4	0.773	INTRON Meltrin	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12135500	3R_12135500_SNP [dm3] 3R_16309778_SNP [dm6]	A	G	1.606e^-4	0.773	DOWNSTREAM Sulf1 INTERGENIC
2L	17782466	2L_17782466_SNP [dm3] 2L_17782466_SNP [dm6]	A	G	1.617e^-4	0.773	INTERGENIC
2R	12328262	2R_12328262_DEL [dm3] 2R_16440757_DEL [dm6]	AT	A	1.620e^-4	0.773	INTERGENIC
2R	13183428	2R_13183428_SNP [dm3] 2R_17295923_SNP [dm6]	A	G	1.630e^-4	0.773	INTRON mbl
2R	13183429	2R_13183429_SNP [dm3] 2R_17295924_SNP [dm6]	A	G	1.630e^-4	0.773	INTRON mbl
2R	14645386	2R_14645386_SNP [dm3] 2R_18757881_SNP [dm6]	A	T	1.633e^-4	0.773	NON_SYNONYMOUS_CODING Jabba UTR_3_PRIME Jabba DOWNSTREAM Cyp12b2 & 1 other INTRON Jabba
2R	14645422	2R_14645422_SNP [dm3] 2R_18757917_SNP [dm6]	G	T	1.633e^-4	0.773	NON_SYNONYMOUS_CODING Jabba UTR_3_PRIME Jabba DOWNSTREAM Cyp12b2 & 1 other INTRON Jabba
3L	9607091	3L_9607091_SNP [dm3] 3L_9613991_SNP [dm6]	C	A	1.639e^-4	0.773	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	9607107	3L_9607107_DEL [dm3] 3L_9614007_DEL [dm6]	TT	T	1.639e^-4	0.773	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	10589097	3R_10589097_SNP [dm3] 3R_14763375_SNP [dm6]	C	G	1.643e^-4	0.773	INTRON jvl
3R	11129081	3R_11129081_INS [dm3] 3R_15303359_INS [dm6]	G	GG	1.645e^-4	0.773	INTRON Tm1
X	6798539	X_6798539_SNP [dm3] X_6904506_SNP [dm6]	G	A	1.648e^-4	0.773	INTERGENIC
3R	22031350	3R_22031350_SNP [dm3] 3R_26205628_SNP [dm6]	T	G	1.656e^-4	0.773	INTRON CR44320
2R	19550990	2R_19550990_SNP [dm3] 2R_23663467_SNP [dm6]	G	A	1.659e^-4	0.773	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4186416	3L_4186416_SNP [dm3] 3L_4186416_SNP [dm6]	T	A	1.659e^-4	0.773	UTR_3_PRIME VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl
X	6332117	X_6332117_SNP [dm3] X_6438084_SNP [dm6]	T	C	1.662e^-4	0.773	INTRON CG42340
3L	1678471	3L_1678471_SNP [dm3] 3L_1678471_SNP [dm6]	G	T	1.663e^-4	0.773	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3R	1078852	3R_1078852_SNP [dm3] 3R_5253130_SNP [dm6]	G	A	1.671e^-4	0.773	UPSTREAM CG1113 DOWNSTREAM CR44019 INTERGENIC
2L	11290443	2L_11290443_SNP [dm3] 2L_11290443_SNP [dm6]	C	A	1.673e^-4	0.773	DOWNSTREAM CR43409 INTERGENIC
3R	16070126	3R_16070126_SNP [dm3] 3R_20244404_SNP [dm6]	G	A	1.678e^-4	0.773	UTR_3_PRIME Nlg4	TF binding site BDTNP1_TFBS_sna
3L	9956662	3L_9956662_SNP [dm3] 3L_9963562_SNP [dm6]	C	A	1.679e^-4	0.773	INTRON CG34356
2R	12133051	2R_12133051_SNP [dm3] 2R_16245546_SNP [dm6]	C	T	1.680e^-4	0.773	INTRON CngA
3L	6285805	3L_6285805_SNP [dm3] 3L_6292705_SNP [dm6]	A	G	1.685e^-4	0.773	INTERGENIC
3R	22941877	3R_22941877_SNP [dm3] 3R_27116155_SNP [dm6]	A	G	1.690e^-4	0.773	SYNONYMOUS_CODING CG6066 UPSTREAM CG5880	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	12493796	3R_12493796_SNP [dm3] 3R_16668074_SNP [dm6]	C	A	1.690e^-4	0.773	INTRON Ubx	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15687364	2R_15687364_SNP [dm3] 2R_19799859_SNP [dm6]	G	T	1.690e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13183160	2R_13183160_SNP [dm3] 2R_17295655_SNP [dm6]	T	A	1.698e^-4	0.773	INTRON mbl
3R	9621030	3R_9621030_SNP [dm3] 3R_13795308_SNP [dm6]	A	G	1.703e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	2424918	3R_2424918_SNP [dm3] 3R_6599196_SNP [dm6]	G	A	1.709e^-4	0.773	INTERGENIC
2R	12328786	2R_12328786_SNP [dm3] 2R_16441281_SNP [dm6]	T	G	1.719e^-4	0.773	INTERGENIC
2R	19705292	2R_19705292_SNP [dm3] 2R_23817769_SNP [dm6]	C	A	1.721e^-4	0.773	INTRON CG4797
X	19505524	X_19505524_SNP [dm3] X_19611491_SNP [dm6]	A	T	1.727e^-4	0.773	UPSTREAM Tyler & 1 other DOWNSTREAM CG14207 INTERGENIC	TF binding site mE1_TFBS_cad
2R	18944627	2R_18944627_INS [dm3] 2R_23057104_INS [dm6]	A	ACA	1.730e^-4	0.773	INTRON CG44252
2R	18626388	2R_18626388_INS [dm3] 2R_22738883_INS [dm6]	A	AGCTA	1.734e^-4	0.773	INTRON jbug
3R	7651856	3R_7651856_SNP [dm3] 3R_11826134_SNP [dm6]	T	A	1.737e^-4	0.773	INTRON CG6959
2R	19117293	2R_19117293_SNP [dm3] 2R_23229770_SNP [dm6]	C	A	1.738e^-4	0.773	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	12235851	3R_12235851_SNP [dm3] 3R_16410129_SNP [dm6]	G	A	1.739e^-4	0.773	INTERGENIC
2L	8301763	2L_8301763_SNP [dm3] 2L_8301763_SNP [dm6]	G	A	1.745e^-4	0.773	NON_SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	12647871	3R_12647871_SNP [dm3] 3R_16822149_SNP [dm6]	A	G	1.746e^-4	0.773	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	17331228	3R_17331228_INS [dm3] 3R_21505506_INS [dm6]	G	GAAATGG	1.746e^-4	0.773	INTRON C15	regulatory region REDfly_CRMs
X	9436216	X_9436216_SNP [dm3] X_9542183_SNP [dm6]	C	A	1.765e^-4	0.773	INTRON CG32700
3L	3028440	3L_3028440_SNP [dm3] 3L_3028440_SNP [dm6]	G	A	1.765e^-4	0.773	INTERGENIC
X	20942915	X_20942915_SNP [dm3] X_21071888_SNP [dm6]	A	T	1.765e^-4	0.773	INTRON bves	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18387293	3L_18387293_SNP [dm3] 3L_18394193_SNP [dm6]	G	T	1.767e^-4	0.773	INTERGENIC	TF binding site mE1_TFBS_cad
3R	27129994	3R_27129994_SNP [dm3] 3R_31304272_SNP [dm6]	C	G	1.768e^-4	0.773	SYNONYMOUS_CODING CG11340
3R	6037397	3R_6037397_SNP [dm3] 3R_10211675_SNP [dm6]	G	C	1.771e^-4	0.773	INTRON Syn & 1 other
2R	12388347	2R_12388347_SNP [dm3] 2R_16500842_SNP [dm6]	A	G	1.771e^-4	0.773	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	18826014	3L_18826014_SNP [dm3] 3L_18832914_SNP [dm6]	G	A	1.781e^-4	0.775	INTRON Indy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1446048	2L_1446048_SNP [dm3] 2L_1446048_SNP [dm6]	C	G	1.785e^-4	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	1949755	3R_1949755_SNP [dm3] 3R_6124033_SNP [dm6]	G	A	1.801e^-4	0.778	UTR_3_PRIME Vha14-2 DOWNSTREAM Vha14-2
2R	13504561	2R_13504561_SNP [dm3] 2R_17617056_SNP [dm6]	C	T	1.803e^-4	0.778	UTR_3_PRIME CG44403 DOWNSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8272182	3L_8272182_SNP [dm3] 3L_8279082_SNP [dm6]	G	C	1.815e^-4	0.778	SYNONYMOUS_CODING Dscam4
2R	13183205	2R_13183205_INS [dm3] 2R_17295700_INS [dm6]	T	TTCATT	1.816e^-4	0.778	INTRON mbl
3R	2429710	3R_2429710_SNP [dm3] 3R_6603988_SNP [dm6]	C	T	1.816e^-4	0.778	INTERGENIC
3R	7760894	3R_7760894_INS [dm3] 3R_11935172_INS [dm6]	C	CT	1.816e^-4	0.778	INTRON Cad87A
2R	14892853	2R_14892853_INS [dm3] 2R_19005348_INS [dm6]	T	TGGTTATTTTT...	1.832e^-4	0.783	INTRON tn
3L	3764687	3L_3764687_SNP [dm3] 3L_3764687_SNP [dm6]	G	T	1.843e^-4	0.786	INTRON CG32264
2R	7899934	2R_7899934_SNP [dm3] 2R_12012429_SNP [dm6]	A	G	1.852e^-4	0.788	INTRON otk
3L	3261762	3L_3261762_SNP [dm3] 3L_3261762_SNP [dm6]	G	T	1.861e^-4	0.788	INTRON ckd
2R	12116736	2R_12116736_SNP [dm3] 2R_16229231_SNP [dm6]	C	T	1.863e^-4	0.788	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15493762	3L_15493762_SNP [dm3] 3L_15500662_SNP [dm6]	C	T	1.866e^-4	0.788	UPSTREAM CG7272 DOWNSTREAM CG7275 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	11290438	2L_11290438_SNP [dm3] 2L_11290438_SNP [dm6]	T	C	1.873e^-4	0.788	DOWNSTREAM CR43409 INTERGENIC
3L	4669989	3L_4669989_SNP [dm3] 3L_4669989_SNP [dm6]	G	A	1.874e^-4	0.788	INTRON axo	TF binding site BDTNP1_TFBS_twi
3R	19019130	3R_19019130_SNP [dm3] 3R_23193408_SNP [dm6]	T	A	1.880e^-4	0.789	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26042041	3R_26042041_SNP [dm3] 3R_30216319_SNP [dm6]	C	T	1.897e^-4	0.789	UPSTREAM CecC INTERGENIC
2R	12638482	2R_12638482_SNP [dm3] 2R_16750977_SNP [dm6]	G	A	1.898e^-4	0.789	SYNONYMOUS_CODING Acp53C14c UPSTREAM Acp53Ea DOWNSTREAM unc-104
X	20944836	X_20944836_SNP [dm3] X_21073809_SNP [dm6]	C	T	1.899e^-4	0.789	INTRON bves
X	18785972	X_18785972_SNP [dm3] X_18891939_SNP [dm6]	G	A	1.907e^-4	0.789	INTRON CG7358	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13872611	2L_13872611_SNP [dm3] 2L_13872611_SNP [dm6]	C	A	1.909e^-4	0.789	INTRON CenG1A
3L	12082211	3L_12082211_SNP [dm3] 3L_12089111_SNP [dm6]	C	T	1.911e^-4	0.789	UTR_3_PRIME CG17154	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16585155	X_16585155_SNP [dm3] X_16691122_SNP [dm6]	G	T	1.911e^-4	0.789	INTRON Sep4
3R	14938337	3R_14938337_SNP [dm3] 3R_19112615_SNP [dm6]	T	G	1.917e^-4	0.789	INTRON CG6040
3L	4186417	3L_4186417_SNP [dm3] 3L_4186417_SNP [dm6]	T	G	1.918e^-4	0.789	UTR_3_PRIME VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl
X	8929305	X_8929305_INS [dm3] X_9035272_INS [dm6]	T	TAT	1.925e^-4	0.789	INTRON CR43836 & 1 other
X	8513304	X_8513304_SNP [dm3] X_8619271_SNP [dm6]	A	T	1.942e^-4	0.789	INTERGENIC
3R	2359233	3R_2359233_SNP [dm3] 3R_6533511_SNP [dm6]	G	T	1.953e^-4	0.789	INTRON dpr11
3R	9588985	3R_9588985_INS [dm3] 3R_13763263_INS [dm6]	G	GG	1.956e^-4	0.789	UTR_3_PRIME CG34383 DOWNSTREAM CG34383	TF binding site mE1_TFBS_inv
3R	18654429	3R_18654429_SNP [dm3] 3R_22828707_SNP [dm6]	A	G	1.964e^-4	0.789	INTERGENIC
X	6483242	X_6483242_SNP [dm3] X_6589209_SNP [dm6]	A	C	1.966e^-4	0.789	UPSTREAM CG17717 DOWNSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13945010	3R_13945010_SNP [dm3] 3R_18119288_SNP [dm6]	C	A	1.969e^-4	0.789	INTRON sr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	13263992	3L_13263992_SNP [dm3] 3L_13270892_SNP [dm6]	A	T	1.970e^-4	0.789	INTRON caps
3L	3803010	3L_3803010_SNP [dm3] 3L_3803010_SNP [dm6]	G	A	1.972e^-4	0.789	DOWNSTREAM ntc INTRON CG32264
2R	18536220	2R_18536220_SNP [dm3] 2R_22648715_SNP [dm6]	T	C	1.974e^-4	0.789	UPSTREAM CG34446 & 1 other DOWNSTREAM CG3746 INTERGENIC
X	281762	X_281762_DEL [dm3] X_387729_DEL [dm6]	AA	A	1.976e^-4	0.789	INTRON CG32816	TF binding site mE1_TFBS_HSA
2R	19547874	2R_19547874_SNP [dm3] 2R_23660351_SNP [dm6]	C	T	1.980e^-4	0.789	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_twi
3R	10846773	3R_10846773_SNP [dm3] 3R_15021051_SNP [dm6]	T	G	1.981e^-4	0.789	INTERGENIC
3L	10961967	3L_10961967_SNP [dm3] 3L_10968867_SNP [dm6]	A	T	1.983e^-4	0.789	INTERGENIC
2R	12388350	2R_12388350_INS [dm3] 2R_16500845_INS [dm6]	A	ACAGAAA	1.995e^-4	0.789	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	4730187	X_4730187_SNP [dm3] X_4836154_SNP [dm6]	C	A	2.004e^-4	0.789	INTERGENIC
3R	7644100	3R_7644100_SNP [dm3] 3R_11818378_SNP [dm6]	A	G	2.005e^-4	0.789	UPSTREAM CoVa INTRON glo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
3R	26098246	3R_26098246_SNP [dm3] 3R_30272524_SNP [dm6]	C	T	2.015e^-4	0.789	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12132915	3R_12132915_SNP [dm3] 3R_16307193_SNP [dm6]	T	G	2.015e^-4	0.789	SYNONYMOUS_CODING Zip89B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10221340	3R_10221340_SNP [dm3] 3R_14395618_SNP [dm6]	C	T	2.021e^-4	0.789	SYNONYMOUS_CODING cv-c DOWNSTREAM mir-2281	TF binding site mE1_TFBS_cad
2L	11296751	2L_11296751_SNP [dm3] 2L_11296751_SNP [dm6]	T	A	2.029e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	19777616	X_19777616_SNP [dm3] X_19883583_SNP [dm6]	C	A	2.029e^-4	0.789	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	2367444	3R_2367444_SNP [dm3] 3R_6541722_SNP [dm6]	G	A	2.034e^-4	0.789	INTRON dpr11
X	18860422	X_18860422_SNP [dm3] X_18966389_SNP [dm6]	A	T	2.035e^-4	0.789	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	18420906	2R_18420906_SNP [dm3] 2R_22533401_SNP [dm6]	G	C	2.036e^-4	0.789	INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11270213	X_11270213_SNP [dm3] X_11376180_SNP [dm6]	T	C	2.036e^-4	0.789	SYNONYMOUS_CODING dlg1 INTRON dlg1
3L	7262538	3L_7262538_SNP [dm3] 3L_7269438_SNP [dm6]	C	T	2.038e^-4	0.789	SYNONYMOUS_CODING unc-13-4A
2R	17493558	2R_17493558_SNP [dm3] 2R_21606053_SNP [dm6]	A	G	2.047e^-4	0.789	UTR_3_PRIME CG10433
3R	23870833	3R_23870833_SNP [dm3] 3R_28045111_SNP [dm6]	T	A	2.049e^-4	0.789	INTRON CG34362
2L	16607534	2L_16607534_SNP [dm3] 2L_16607534_SNP [dm6]	G	C	2.061e^-4	0.789	SYNONYMOUS_CODING CG4631 DOWNSTREAM CG31815 INTRON CG42389
3R	20933812	3R_20933812_SNP [dm3] 3R_25108090_SNP [dm6]	G	A	2.069e^-4	0.789	NON_SYNONYMOUS_CODING CG34027
2L	1933449	2L_1933449_SNP [dm3] 2L_1933449_SNP [dm6]	G	A	2.071e^-4	0.789	INTRON CG7337
3L	14839403	3L_14839403_SNP [dm3] 3L_14846303_SNP [dm6]	C	T	2.082e^-4	0.789	INTRON CG17839
3R	15473617	3R_15473617_INS [dm3] 3R_19647895_INS [dm6]	T	TTAAACTAAAATGT...	2.083e^-4	0.789	UPSTREAM CG31220 DOWNSTREAM Nup58 INTRON CG6195	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6954894	2R_6954894_SNP [dm3] 2R_11067389_SNP [dm6]	C	T	2.083e^-4	0.789	INTRON luna	TF binding site mE1_TFBS_chinmo
2R	16100944	2R_16100944_SNP [dm3] 2R_20213439_SNP [dm6]	A	T	2.085e^-4	0.789	UPSTREAM CG16894 INTERGENIC
X	8513312	X_8513312_SNP [dm3] X_8619279_SNP [dm6]	T	A	2.089e^-4	0.789	INTERGENIC
2R	16430654	2R_16430654_SNP [dm3] 2R_20543149_SNP [dm6]	G	A	2.091e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8301543	2L_8301543_SNP [dm3] 2L_8301543_SNP [dm6]	T	C	2.093e^-4	0.789	SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	2321480	3R_2321480_SNP [dm3] 3R_6495758_SNP [dm6]	T	C	2.094e^-4	0.789	DOWNSTREAM CG15186 & 1 other INTERGENIC
3R	2350124	3R_2350124_SNP [dm3] 3R_6524402_SNP [dm6]	C	G	2.097e^-4	0.789	INTERGENIC
2L	8301536	2L_8301536_SNP [dm3] 2L_8301536_SNP [dm6]	A	G	2.099e^-4	0.789	UTR_3_PRIME wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	8578318	3R_8578318_SNP [dm3] 3R_12752596_SNP [dm6]	A	G	2.101e^-4	0.789	SYNONYMOUS_CODING beat-Vc
2R	20207015	2R_20207015_SNP [dm3] 2R_24319492_SNP [dm6]	T	C	2.103e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9817431	3L_9817431_SNP [dm3] 3L_9824331_SNP [dm6]	A	T	2.119e^-4	0.789	UPSTREAM Ilp5 INTRON CG43897
3R	5979413	3R_5979413_SNP [dm3] 3R_10153691_SNP [dm6]	C	T	2.120e^-4	0.789	INTRON Invadolysin
3L	3366478	3L_3366478_SNP [dm3] 3L_3366478_SNP [dm6]	G	A	2.128e^-4	0.789	SYNONYMOUS_CODING kst INTRON kst	TF binding site mE1_TFBS_cad
2L	1268191	2L_1268191_SNP [dm3] 2L_1268191_SNP [dm6]	T	C	2.135e^-4	0.789	INTRON robo3
3L	902143	3L_902143_SNP [dm3] 3L_902143_SNP [dm6]	A	G	2.142e^-4	0.789	UPSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2341908	3R_2341908_SNP [dm3] 3R_6516186_SNP [dm6]	T	A	2.143e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12889291	3R_12889291_SNP [dm3] 3R_17063569_SNP [dm6]	A	T	2.156e^-4	0.789	INTRON Dad
2R	10655389	2R_10655389_SNP [dm3] 2R_14767884_SNP [dm6]	T	C	2.159e^-4	0.789	INTRON Spred	TF binding site BDTNP1_TFBS_dl
2L	5253710	2L_5253710_SNP [dm3] 2L_5253710_SNP [dm6]	G	A	2.162e^-4	0.789	INTRON tkv	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17835971	2L_17835971_SNP [dm3] 2L_17835971_SNP [dm6]	T	A	2.162e^-4	0.789	INTRON CadN2
3R	12350728	3R_12350728_SNP [dm3] 3R_16525006_SNP [dm6]	C	T	2.165e^-4	0.789	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	12334546	3R_12334546_DEL [dm3] 3R_16508824_DEL [dm6]	CAC	C	2.169e^-4	0.789	INTRON CG42342	TF binding site BDTNP1_TFBS_twi
3L	4917040	3L_4917040_SNP [dm3] 3L_4917040_SNP [dm6]	T	A	2.170e^-4	0.789	INTRON Rh50
2L	10787554	2L_10787554_SNP [dm3] 2L_10787554_SNP [dm6]	A	C	2.170e^-4	0.789	INTRON CG31869
3R	9840711	3R_9840711_SNP [dm3] 3R_14014989_SNP [dm6]	G	A	2.171e^-4	0.789	INTRON rdx
3L	5986672	3L_5986672_INS [dm3] 3L_5993572_INS [dm6]	G	GGG	2.186e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24321996	3R_24321996_SNP [dm3] 3R_28496274_SNP [dm6]	C	G	2.186e^-4	0.789	INTRON Dhc98D
3R	19135473	3R_19135473_SNP [dm3] 3R_23309751_SNP [dm6]	A	T	2.188e^-4	0.789	INTRON pnt	TF binding site mE1_TFBS_Trl
3R	18844758	3R_18844758_SNP [dm3] 3R_23019036_SNP [dm6]	A	G	2.190e^-4	0.789	INTERGENIC
3R	25383272	3R_25383272_SNP [dm3] 3R_29557550_SNP [dm6]	C	T	2.192e^-4	0.789	SYNONYMOUS_CODING Dr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13019929	3L_13019929_SNP [dm3] 3L_13026829_SNP [dm6]	A	T	2.195e^-4	0.789	UPSTREAM Zmynd10 INTERGENIC
3R	338157	3R_338157_SNP [dm3] 3R_4512435_SNP [dm6]	T	C	2.202e^-4	0.789	INTRON CG34357
3L	9985216	3L_9985216_SNP [dm3] 3L_9992116_SNP [dm6]	C	A	2.204e^-4	0.789	INTRON dpr6
3R	2343903	3R_2343903_SNP [dm3] 3R_6518181_SNP [dm6]	G	C	2.205e^-4	0.789	INTERGENIC
3R	11230324	3R_11230324_SNP [dm3] 3R_15404602_SNP [dm6]	C	G	2.220e^-4	0.792	INTRON CG6125	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6331221	3R_6331221_SNP [dm3] 3R_10505499_SNP [dm6]	G	A	2.230e^-4	0.792	INTERGENIC
2L	11203104	2L_11203104_SNP [dm3] 2L_11203104_SNP [dm6]	A	G	2.233e^-4	0.792	INTRON Ca-beta
3L	18096973	3L_18096973_SNP [dm3] 3L_18103873_SNP [dm6]	G	A	2.233e^-4	0.792	INTRON CG13698
3L	10797961	3L_10797961_SNP [dm3] 3L_10804861_SNP [dm6]	T	C	2.236e^-4	0.792	DOWNSTREAM CR44347 EXON CR44347
3L	10182815	3L_10182815_SNP [dm3] 3L_10189715_SNP [dm6]	C	A	2.238e^-4	0.792	DOWNSTREAM ect INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	4947827	3R_4947827_SNP [dm3] 3R_9122105_SNP [dm6]	C	G	2.258e^-4	0.798	INTRON pum
3L	2898876	3L_2898876_SNP [dm3] 3L_2898876_SNP [dm6]	T	C	2.267e^-4	0.798	INTRON Shab
X	8513315	X_8513315_SNP [dm3] X_8619282_SNP [dm6]	A	T	2.269e^-4	0.798	INTERGENIC
3L	3568040	3L_3568040_SNP [dm3] 3L_3568040_SNP [dm6]	T	C	2.276e^-4	0.799	INTRON Eip63E	TF binding site mE1_TFBS_bab1
3L	9799046	3L_9799046_SNP [dm3] 3L_9805946_SNP [dm6]	A	G	2.279e^-4	0.799	NON_SYNONYMOUS_CODING CG32052	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	3755751	3L_3755751_MNP [dm3] 3L_3755751_MNP [dm6]	GCC	CAA	2.285e^-4	0.799	UPSTREAM ppk27 INTRON CG32264
2L	10534496	2L_10534496_SNP [dm3] 2L_10534496_SNP [dm6]	C	A	2.304e^-4	0.803	UTR_5_PRIME CG18302 DOWNSTREAM CG18301
X	16376542	X_16376542_SNP [dm3] X_16482509_SNP [dm6]	G	A	2.308e^-4	0.803	INTRON para
2L	4415806	2L_4415806_SNP [dm3] 2L_4415806_SNP [dm6]	G	T	2.310e^-4	0.803	INTRON CG15431
3R	14944122	3R_14944122_SNP [dm3] 3R_19118400_SNP [dm6]	G	A	2.316e^-4	0.803	INTRON CG6040
3R	25525928	3R_25525928_SNP [dm3] 3R_29700206_SNP [dm6]	T	G	2.324e^-4	0.803	INTERGENIC	TF binding site mE1_TFBS_sens
X	18640136	X_18640136_SNP [dm3] X_18746103_SNP [dm6]	A	G	2.325e^-4	0.803	DOWNSTREAM CG12609 INTERGENIC	TF binding site mE1_TFBS_inv
2R	19118490	2R_19118490_SNP [dm3] 2R_23230967_SNP [dm6]	C	T	2.328e^-4	0.803	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3366375	3L_3366375_SNP [dm3] 3L_3366375_SNP [dm6]	G	A	2.328e^-4	0.803	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20558059	2R_20558059_SNP [dm3] 2R_24670536_SNP [dm6]	T	C	2.358e^-4	0.807	SYNONYMOUS_CODING Pof DOWNSTREAM Mmp1	TF binding site mE1_TFBS_chinmo
3L	9799158	3L_9799158_SNP [dm3] 3L_9806058_SNP [dm6]	A	T	2.365e^-4	0.807	SYNONYMOUS_CODING CG32052	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	1436182	3L_1436182_SNP [dm3] 3L_1436182_SNP [dm6]	C	T	2.369e^-4	0.807	NON_SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13762224	3L_13762224_INS [dm3] 3L_13769124_INS [dm6]	T	TT	2.369e^-4	0.807	INTRON bru-3
3R	6101868	3R_6101868_SNP [dm3] 3R_10276146_SNP [dm6]	C	A	2.373e^-4	0.807	INTRON CG43143	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7524852	2L_7524852_SNP [dm3] 2L_7524852_SNP [dm6]	C	T	2.377e^-4	0.807	INTRON RapGAP1
3R	5078819	3R_5078819_SNP [dm3] 3R_9253097_SNP [dm6]	A	C	2.379e^-4	0.807	UTR_3_PRIME St2 UPSTREAM CR16735
2L	11289978	2L_11289978_SNP [dm3] 2L_11289978_SNP [dm6]	C	T	2.383e^-4	0.807	DOWNSTREAM CR43409 INTERGENIC
2R	15916885	2R_15916885_SNP [dm3] 2R_20029380_SNP [dm6]	G	A	2.386e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	20030823	2R_20030823_SNP [dm3] 2R_24143300_SNP [dm6]	T	C	2.395e^-4	0.807	INTRON Dat
3R	19304797	3R_19304797_SNP [dm3] 3R_23479075_SNP [dm6]	G	A	2.397e^-4	0.807	INTERGENIC
3L	3362307	3L_3362307_SNP [dm3] 3L_3362307_SNP [dm6]	G	C	2.404e^-4	0.807	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
X	20319421	X_20319421_SNP [dm3] X_20448394_SNP [dm6]	G	A	2.411e^-4	0.807	UPSTREAM CG32506 INTERGENIC
3L	3202055	3L_3202055_SNP [dm3] 3L_3202055_SNP [dm6]	G	T	2.419e^-4	0.807	NON_SYNONYMOUS_CODING gry DOWNSTREAM CG32271
X	20991848	X_20991848_SNP [dm3] X_21120821_SNP [dm6]	C	T	2.421e^-4	0.807	UPSTREAM CR44374 DOWNSTREAM CG15445 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3233465	3L_3233465_SNP [dm3] 3L_3233465_SNP [dm6]	C	T	2.422e^-4	0.807	UTR_3_PRIME CG11505
3R	11302003	3R_11302003_SNP [dm3] 3R_15476281_SNP [dm6]	T	C	2.434e^-4	0.807	UPSTREAM AdamTS-A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	20022330	2R_20022330_SNP [dm3] 2R_24134807_SNP [dm6]	G	A	2.447e^-4	0.807	SYNONYMOUS_CODING Zfrp8 DOWNSTREAM CG4065	TF binding site mE1_TFBS_sens
3L	1623981	3L_1623981_SNP [dm3] 3L_1623981_SNP [dm6]	T	C	2.449e^-4	0.807	SYNONYMOUS_CODING GC DOWNSTREAM ABCB7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9310986	2R_9310986_SNP [dm3] 2R_13423481_SNP [dm6]	G	T	2.455e^-4	0.807	SYNONYMOUS_CODING CG30060 INTRON CG42321
3L	9731055	3L_9731055_SNP [dm3] 3L_9737955_SNP [dm6]	G	A	2.457e^-4	0.807	INTRON CG42268
3R	22941916	3R_22941916_SNP [dm3] 3R_27116194_SNP [dm6]	T	C	2.462e^-4	0.807	SYNONYMOUS_CODING CG6066 UPSTREAM CG5880	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	12962291	X_12962291_SNP [dm3] X_13068258_SNP [dm6]	T	C	2.465e^-4	0.807	SYNONYMOUS_CODING rad
3R	21045584	3R_21045584_SNP [dm3] 3R_25219862_SNP [dm6]	A	T	2.466e^-4	0.807	NON_SYNONYMOUS_CODING CG31103	TF binding site BDTNP1_TFBS_dl
3R	19081211	3R_19081211_SNP [dm3] 3R_23255489_SNP [dm6]	C	T	2.471e^-4	0.807	UTR_3_PRIME wda DOWNSTREAM EloA	TF binding site mE1_TFBS_cad
X	1161415	X_1161415_SNP [dm3] X_1267382_SNP [dm6]	G	A	2.475e^-4	0.807	INTRON Atf3
3L	6965399	3L_6965399_SNP [dm3] 3L_6972299_SNP [dm6]	T	C	2.490e^-4	0.807	SYNONYMOUS_CODING CG10063 DOWNSTREAM CG9953 & 1 other
3L	10024669	3L_10024669_SNP [dm3] 3L_10031569_SNP [dm6]	C	A	2.491e^-4	0.807	INTRON dpr6
X	20534352	X_20534352_SNP [dm3] X_20663325_SNP [dm6]	T	G	2.493e^-4	0.807	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	6037496	3R_6037496_SNP [dm3] 3R_10211774_SNP [dm6]	T	C	2.496e^-4	0.807	INTRON Syn & 1 other
3R	8428228	3R_8428228_SNP [dm3] 3R_12602506_SNP [dm6]	C	T	2.499e^-4	0.807	INTERGENIC
X	15185313	X_15185313_SNP [dm3] X_15291280_SNP [dm6]	T	G	2.500e^-4	0.807	DOWNSTREAM CR44664 INTERGENIC
3L	2995960	3L_2995960_SNP [dm3] 3L_2995960_SNP [dm6]	G	A	2.501e^-4	0.807	UTR_3_PRIME CG2113
3R	13980215	3R_13980215_SNP [dm3] 3R_18154493_SNP [dm6]	T	G	2.506e^-4	0.807	DOWNSTREAM CG14316 INTERGENIC
3L	11198450	3L_11198450_DEL [dm3] 3L_11205350_DEL [dm6]	TT	T	2.524e^-4	0.807	INTRON Plod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8194980	3R_8194980_SNP [dm3] 3R_12369258_SNP [dm6]	C	T	2.531e^-4	0.807	UTR_5_PRIME GstD1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	2347212	3R_2347212_SNP [dm3] 3R_6521490_SNP [dm6]	C	T	2.541e^-4	0.807	INTERGENIC
3R	14135128	3R_14135128_SNP [dm3] 3R_18309406_SNP [dm6]	T	A	2.546e^-4	0.807	START_GAINED PKD UTR_5_PRIME PKD
3R	6621248	3R_6621248_SNP [dm3] 3R_10795526_SNP [dm6]	G	A	2.551e^-4	0.807	NON_SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA
X	13253189	X_13253189_SNP [dm3] X_13359156_SNP [dm6]	C	G	2.555e^-4	0.807	UPSTREAM Syt12 INTERGENIC
3R	4374864	3R_4374864_SNP [dm3] 3R_8549142_SNP [dm6]	T	C	2.556e^-4	0.807	INTERGENIC
3L	3770085	3L_3770085_SNP [dm3] 3L_3770085_SNP [dm6]	G	T	2.560e^-4	0.807	INTRON CG32264
X	7915542	X_7915542_SNP [dm3] X_8021509_SNP [dm6]	C	G	2.562e^-4	0.807	UPSTREAM CG15333 INTRON Tbh
3L	16171161	3L_16171161_DEL [dm3] 3L_16178061_DEL [dm6]	TT	T	2.565e^-4	0.807	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	21013342	3R_21013342_SNP [dm3] 3R_25187620_SNP [dm6]	A	G	2.570e^-4	0.807	INTRON lobo & 1 other
X	20944679	X_20944679_SNP [dm3] X_21073652_SNP [dm6]	T	C	2.571e^-4	0.807	INTRON bves
X	16900711	X_16900711_SNP [dm3] X_17006678_SNP [dm6]	G	T	2.575e^-4	0.807	INTRON CG45002
3R	9822569	3R_9822569_INS [dm3] 3R_13996847_INS [dm6]	T	TAT	2.582e^-4	0.807	INTRON rdx
3L	12258118	3L_12258118_SNP [dm3] 3L_12265018_SNP [dm6]	T	C	2.583e^-4	0.807	INTRON app	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13668638	2L_13668638_SNP [dm3] 2L_13668638_SNP [dm6]	T	G	2.588e^-4	0.807	INTRON CG18507
2R	13778058	2R_13778058_SNP [dm3] 2R_17890553_SNP [dm6]	G	C	2.602e^-4	0.807	UPSTREAM PPO1 INTRON Elk
3L	3649186	3L_3649186_SNP [dm3] 3L_3649186_SNP [dm6]	T	A	2.612e^-4	0.807	INTRON dar1
3L	18824957	3L_18824957_SNP [dm3] 3L_18831857_SNP [dm6]	T	C	2.626e^-4	0.807	INTRON Indy
3R	22088039	3R_22088039_SNP [dm3] 3R_26262317_SNP [dm6]	C	T	2.626e^-4	0.807	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	18654451	3R_18654451_DEL [dm3] 3R_22828729_DEL [dm6]	TT	T	2.633e^-4	0.807	INTERGENIC
2L	10758099	2L_10758099_INS [dm3] 2L_10758099_INS [dm6]	T	TC	2.640e^-4	0.807	INTERGENIC
X	7332377	X_7332377_SNP [dm3] X_7438344_SNP [dm6]	C	G	2.642e^-4	0.807	INTERGENIC
2L	13239022	2L_13239022_SNP [dm3] 2L_13239022_SNP [dm6]	C	T	2.648e^-4	0.807	UPSTREAM CG5945 INTRON CG5867
2R	19107554	2R_19107554_SNP [dm3] 2R_23220031_SNP [dm6]	G	A	2.651e^-4	0.807	INTERGENIC
2L	19272668	2L_19272668_SNP [dm3] 2L_19272668_SNP [dm6]	C	A	2.656e^-4	0.807	INTRON CR44190
3R	11231997	3R_11231997_SNP [dm3] 3R_15406275_SNP [dm6]	T	C	2.657e^-4	0.807	UPSTREAM CG6125 INTRON CG6125
3R	4283876	3R_4283876_SNP [dm3] 3R_8458154_SNP [dm6]	C	A	2.658e^-4	0.807	INTRON CG45263
2L	11707962	2L_11707962_SNP [dm3] 2L_11707962_SNP [dm6]	C	A	2.661e^-4	0.807	INTERGENIC
2R	10013733	2R_10013733_SNP [dm3] 2R_14126228_SNP [dm6]	T	A	2.666e^-4	0.807	INTRON Prosap
2L	8093896	2L_8093896_SNP [dm3] 2L_8093896_SNP [dm6]	T	C	2.667e^-4	0.807	INTRON Bsg	TF binding site BDTNP1_TFBS_twi
3R	14265324	3R_14265324_INS [dm3] 3R_18439602_INS [dm6]	T	TCGT	2.684e^-4	0.807	UPSTREAM fru INTRON fru
3L	7624531	3L_7624531_SNP [dm3] 3L_7631431_SNP [dm6]	A	G	2.687e^-4	0.807	INTRON CG33275
X	8203814	X_8203814_SNP [dm3] X_8309781_SNP [dm6]	G	A	2.690e^-4	0.807	INTRON nAChRalpha3
X	9436215	X_9436215_SNP [dm3] X_9542182_SNP [dm6]	T	A	2.693e^-4	0.807	INTRON CG32700
3R	18596059	3R_18596059_SNP [dm3] 3R_22770337_SNP [dm6]	G	A	2.694e^-4	0.807	UPSTREAM CG43092 & 1 other DOWNSTREAM CG43094 & 1 other INTRON Usp12-46 & 1 other
2R	20190684	2R_20190684_SNP [dm3] 2R_24303161_SNP [dm6]	T	A	2.701e^-4	0.807	INTERGENIC
3R	13618618	3R_13618618_SNP [dm3] 3R_17792896_SNP [dm6]	C	A	2.704e^-4	0.807	INTRON CG43102
3L	11320100	3L_11320100_SNP [dm3] 3L_11327000_SNP [dm6]	T	C	2.708e^-4	0.807	INTERGENIC
2R	1820250	2R_1820250_SNP [dm3] 2R_5932745_SNP [dm6]	T	A	2.716e^-4	0.807	INTERGENIC
3L	14816159	3L_14816159_SNP [dm3] 3L_14823059_SNP [dm6]	G	A	2.722e^-4	0.807	INTRON CG17839
2L	14573282	2L_14573282_SNP [dm3] 2L_14573282_SNP [dm6]	G	C	2.732e^-4	0.807	INTERGENIC
3L	16447472	3L_16447472_SNP [dm3] 3L_16454372_SNP [dm6]	C	T	2.737e^-4	0.807	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	248750	2L_248750_SNP [dm3] 2L_248750_SNP [dm6]	G	T	2.747e^-4	0.807	UPSTREAM CR44218 INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	4273700	X_4273700_SNP [dm3] X_4379667_SNP [dm6]	T	A	2.748e^-4	0.807	INTERGENIC
2R	14653691	2R_14653691_SNP [dm3] 2R_18766186_SNP [dm6]	A	C	2.754e^-4	0.807	UPSTREAM Mctp INTRON Mctp
3L	9735159	3L_9735159_SNP [dm3] 3L_9742059_SNP [dm6]	T	A	2.756e^-4	0.807	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	865961	X_865961_INS [dm3] X_971928_INS [dm6]	T	GTA	2.761e^-4	0.807	INTERGENIC
3R	23883623	3R_23883623_SNP [dm3] 3R_28057901_SNP [dm6]	C	T	2.765e^-4	0.807	INTRON CG34362
X	288640	X_288640_INS [dm3] X_394607_INS [dm6]	A	AT	2.773e^-4	0.807	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	6576609	2L_6576609_SNP [dm3] 2L_6576609_SNP [dm6]	G	C	2.777e^-4	0.807	INTRON CG11319
2R	14646668	2R_14646668_SNP [dm3] 2R_18759163_SNP [dm6]	A	G	2.778e^-4	0.807	SYNONYMOUS_CODING Jabba
X	20320075	X_20320075_SNP [dm3] X_20449048_SNP [dm6]	C	T	2.778e^-4	0.807	UPSTREAM CG32506 INTERGENIC
2R	18575813	2R_18575813_SNP [dm3] 2R_22688308_SNP [dm6]	C	T	2.779e^-4	0.807	SYNONYMOUS_CODING ppa UPSTREAM CR44762	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8763114	2L_8763114_INS [dm3] 2L_8763114_INS [dm6]	T	TT	2.784e^-4	0.807	INTERGENIC
3R	6330754	3R_6330754_SNP [dm3] 3R_10505032_SNP [dm6]	T	C	2.787e^-4	0.807	INTERGENIC
3L	9255013	3L_9255013_SNP [dm3] 3L_9261913_SNP [dm6]	A	G	2.788e^-4	0.807	INTRON GluRIB	TF binding site BDTNP1_TFBS_twi
2L	2304634	2L_2304634_SNP [dm3] 2L_2304634_SNP [dm6]	A	G	2.796e^-4	0.807	INTERGENIC
3R	24356017	3R_24356017_SNP [dm3] 3R_28530295_SNP [dm6]	C	A	2.798e^-4	0.807	SYNONYMOUS_CODING Ppn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5690823	X_5690823_SNP [dm3] X_5796790_SNP [dm6]	T	C	2.812e^-4	0.807	INTERGENIC
3L	3755951	3L_3755951_SNP [dm3] 3L_3755951_SNP [dm6]	T	C	2.818e^-4	0.807	UPSTREAM ppk27 INTRON CG32264
3R	1768955	3R_1768955_SNP [dm3] 3R_5943233_SNP [dm6]	A	C	2.836e^-4	0.807	INTRON CG34113
3R	2502765	3R_2502765_SNP [dm3] 3R_6677043_SNP [dm6]	A	C	2.839e^-4	0.807	INTRON lab	TF binding site mE1_TFBS_cad
3L	8407787	3L_8407787_SNP [dm3] 3L_8414687_SNP [dm6]	G	T	2.847e^-4	0.807	SYNONYMOUS_CODING Exo70 DOWNSTREAM mtrm	TF binding site mE1_TFBS_HSA
3R	9869481	3R_9869481_SNP [dm3] 3R_14043759_SNP [dm6]	T	A	2.854e^-4	0.807	DOWNSTREAM tRNA:S2b:88A INTERGENIC
2L	10758111	2L_10758111_SNP [dm3] 2L_10758111_SNP [dm6]	G	A	2.856e^-4	0.807	INTERGENIC
2L	2304501	2L_2304501_SNP [dm3] 2L_2304501_SNP [dm6]	A	G	2.856e^-4	0.807	INTERGENIC
2L	13668680	2L_13668680_SNP [dm3] 2L_13668680_SNP [dm6]	C	A	2.867e^-4	0.807	INTRON CG18507
3L	15262246	3L_15262246_SNP [dm3] 3L_15269146_SNP [dm6]	C	T	2.868e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	2329787	3R_2329787_SNP [dm3] 3R_6504065_SNP [dm6]	G	A	2.878e^-4	0.807	INTERGENIC
X	20527070	X_20527070_SNP [dm3] X_20656043_SNP [dm6]	G	C	2.889e^-4	0.807	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15391411	X_15391411_INS [dm3] X_15497378_INS [dm6]	T	TT	2.892e^-4	0.807	DOWNSTREAM CR44888 INTRON Gmap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	4374827	3R_4374827_SNP [dm3] 3R_8549105_SNP [dm6]	A	C	2.900e^-4	0.807	INTERGENIC
3R	19335553	3R_19335553_SNP [dm3] 3R_23509831_SNP [dm6]	G	T	2.901e^-4	0.807	INTERGENIC
2L	1444267	2L_1444267_SNP [dm3] 2L_1444267_SNP [dm6]	C	T	2.903e^-4	0.807	DOWNSTREAM CG43402 INTERGENIC
2R	9310529	2R_9310529_SNP [dm3] 2R_13423024_SNP [dm6]	A	G	2.904e^-4	0.807	NON_SYNONYMOUS_CODING CG30060 INTRON CG42321
3R	2335552	3R_2335552_SNP [dm3] 3R_6509830_SNP [dm6]	T	C	2.906e^-4	0.807	INTERGENIC
3L	3325869	3L_3325869_SNP [dm3] 3L_3325869_SNP [dm6]	C	T	2.910e^-4	0.807	UTR_5_PRIME CG11526 UPSTREAM PHGPx INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3366145	3L_3366145_SNP [dm3] 3L_3366145_SNP [dm6]	A	T	2.916e^-4	0.807	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9996199	3L_9996199_SNP [dm3] 3L_10003099_SNP [dm6]	G	T	2.921e^-4	0.807	INTRON dpr6
3L	1458193	3L_1458193_SNP [dm3] 3L_1458193_SNP [dm6]	A	C	2.934e^-4	0.807	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
X	865682	X_865682_SNP [dm3] X_971649_SNP [dm6]	T	C	2.935e^-4	0.807	INTERGENIC
X	8096950	X_8096950_SNP [dm3] X_8202917_SNP [dm6]	G	A	2.943e^-4	0.807	INTRON sdt
2R	10693447	2R_10693447_SNP [dm3] 2R_14805942_SNP [dm6]	T	C	2.944e^-4	0.807	INTRON kn	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	19403088	3R_19403088_SNP [dm3] 3R_23577366_SNP [dm6]	G	T	2.952e^-4	0.807	INTRON beat-IV
2R	12325899	2R_12325899_SNP [dm3] 2R_16438394_SNP [dm6]	G	T	2.955e^-4	0.807	INTERGENIC
3L	9605920	3L_9605920_SNP [dm3] 3L_9612820_SNP [dm6]	G	A	2.955e^-4	0.807	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4123942	3L_4123942_SNP [dm3] 3L_4123942_SNP [dm6]	T	C	2.956e^-4	0.807	UTR_3_PRIME ens
3R	22752310	3R_22752310_SNP [dm3] 3R_26926588_SNP [dm6]	T	A	2.958e^-4	0.807	INTRON sda
3L	4916945	3L_4916945_SNP [dm3] 3L_4916945_SNP [dm6]	C	T	2.958e^-4	0.807	INTRON Rh50
3L	18778060	3L_18778060_INS [dm3] 3L_18784960_INS [dm6]	A	ATTTGA	2.959e^-4	0.807	INTRON ftz-f1
3R	4370439	3R_4370439_SNP [dm3] 3R_8544717_SNP [dm6]	T	G	2.959e^-4	0.807	UPSTREAM CR45575 INTERGENIC
2L	9596811	2L_9596811_SNP [dm3] 2L_9596811_SNP [dm6]	G	T	2.960e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	8877418	2R_8877418_SNP [dm3] 2R_12989913_SNP [dm6]	A	T	2.962e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	23870847	3R_23870847_SNP [dm3] 3R_28045125_SNP [dm6]	T	C	2.970e^-4	0.807	INTRON CG34362
2R	10719281	2R_10719281_SNP [dm3] 2R_14831776_SNP [dm6]	C	T	2.984e^-4	0.807	INTERGENIC
2L	2304653	2L_2304653_SNP [dm3] 2L_2304653_SNP [dm6]	A	C	2.984e^-4	0.807	INTERGENIC
X	21144617	X_21144617_SNP [dm3] X_21273590_SNP [dm6]	A	T	2.987e^-4	0.807	INTRON CG32521
3R	19304684	3R_19304684_SNP [dm3] 3R_23478962_SNP [dm6]	A	T	2.993e^-4	0.807	INTERGENIC
3L	2530857	3L_2530857_SNP [dm3] 3L_2530857_SNP [dm6]	T	A	2.997e^-4	0.807	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	12901948	3R_12901948_SNP [dm3] 3R_17076226_SNP [dm6]	C	G	2.997e^-4	0.807	INTRON Keap1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12524613	2L_12524613_SNP [dm3] 2L_12524613_SNP [dm6]	C	T	2.999e^-4	0.807	INTRON bun
2R	16922792	2R_16922792_SNP [dm3] 2R_21035287_SNP [dm6]	G	A	3.006e^-4	0.807	INTERGENIC
2L	7021551	2L_7021551_INS [dm3] 2L_7021551_INS [dm6]	T	TCATGACGAT	3.009e^-4	0.807	UPSTREAM Pcp INTRON ade3
2L	2583385	2L_2583385_SNP [dm3] 2L_2583385_SNP [dm6]	C	G	3.013e^-4	0.807	INTRON Drp1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4921499	3L_4921499_SNP [dm3] 3L_4921499_SNP [dm6]	C	A	3.023e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13284955	2R_13284955_SNP [dm3] 2R_17397450_SNP [dm6]	T	G	3.023e^-4	0.807	INTRON Sip1
3R	13053370	3R_13053370_SNP [dm3] 3R_17227648_SNP [dm6]	T	C	3.024e^-4	0.807	INTERGENIC
2R	7680575	2R_7680575_SNP [dm3] 2R_11793070_SNP [dm6]	A	G	3.028e^-4	0.807	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	7215594	3R_7215594_SNP [dm3] 3R_11389872_SNP [dm6]	T	A	3.033e^-4	0.807	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	5576501	3L_5576501_SNP [dm3] 3L_5583401_SNP [dm6]	T	A	3.040e^-4	0.807	UPSTREAM l_3_psg2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	10496306	3R_10496306_SNP [dm3] 3R_14670584_SNP [dm6]	C	G	3.046e^-4	0.807	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad
3L	2802426	3L_2802426_SNP [dm3] 3L_2802426_SNP [dm6]	G	C	3.055e^-4	0.807	INTRON CG43444
3L	20028427	3L_20028427_SNP [dm3] 3L_20035327_SNP [dm6]	G	T	3.068e^-4	0.807	INTERGENIC
2R	19621308	2R_19621308_DEL [dm3] 2R_23733785_DEL [dm6]	TGCT	T	3.072e^-4	0.807	UTR_3_PRIME Sesn DOWNSTREAM mir-4979 & 1 other
3R	10519748	3R_10519748_SNP [dm3] 3R_14694026_SNP [dm6]	C	A	3.075e^-4	0.807	INTRON Meltrin	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10562621	3L_10562621_SNP [dm3] 3L_10569521_SNP [dm6]	T	C	3.083e^-4	0.807	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	14680222	2R_14680222_SNP [dm3] 2R_18792717_SNP [dm6]	A	C	3.085e^-4	0.807	INTRON CG15080	TF binding site mE1_TFBS_cad
X	10019458	X_10019458_INS [dm3] X_10125425_INS [dm6]	A	AA	3.086e^-4	0.807	DOWNSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
3L	3273232	3L_3273232_INS [dm3] 3L_3273232_INS [dm6]	T	TTTTTT	3.087e^-4	0.807	INTRON CG14960
3R	2361239	3R_2361239_DEL [dm3] 3R_6535517_DEL [dm6]	AATGA	A	3.088e^-4	0.807	INTRON dpr11	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17493084	2R_17493084_SNP [dm3] 2R_21605579_SNP [dm6]	G	T	3.089e^-4	0.807	UPSTREAM CR45150 DOWNSTREAM CG10433 INTERGENIC
3R	25524535	3R_25524535_SNP [dm3] 3R_29698813_SNP [dm6]	C	T	3.091e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17258517	2R_17258517_SNP [dm3] 2R_21371012_SNP [dm6]	A	C	3.093e^-4	0.807	INTRON cv-2
3L	2986461	3L_2986461_SNP [dm3] 3L_2986461_SNP [dm6]	T	A	3.094e^-4	0.807	INTERGENIC
3R	11862741	3R_11862741_SNP [dm3] 3R_16037019_SNP [dm6]	A	G	3.094e^-4	0.807	INTRON pnr	TF binding site BDTNP1_TFBS_dl
3R	10975088	3R_10975088_SNP [dm3] 3R_15149366_SNP [dm6]	T	C	3.104e^-4	0.807	INTERGENIC
3L	13948786	3L_13948786_SNP [dm3] 3L_13955686_SNP [dm6]	T	C	3.114e^-4	0.807	INTRON CG32137
3L	4522090	3L_4522090_SNP [dm3] 3L_4522090_SNP [dm6]	G	A	3.117e^-4	0.807	INTRON Tie
2L	8624291	2L_8624291_SNP [dm3] 2L_8624291_SNP [dm6]	T	C	3.120e^-4	0.807	INTRON Sema-1a	TF binding site mE1_TFBS_inv
3R	26255118	3R_26255118_SNP [dm3] 3R_30429396_SNP [dm6]	C	T	3.128e^-4	0.807	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16531645	2R_16531645_SNP [dm3] 2R_20644140_SNP [dm6]	G	C	3.134e^-4	0.807	UTR_5_PRIME DMAP1 UPSTREAM CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	5114030	2R_5114030_SNP [dm3] 2R_9226525_SNP [dm6]	G	A	3.135e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16431546	2R_16431546_SNP [dm3] 2R_20544041_SNP [dm6]	C	T	3.141e^-4	0.807	INTERGENIC
3R	12102213	3R_12102213_SNP [dm3] 3R_16276491_SNP [dm6]	C	A	3.141e^-4	0.807	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	14279940	2L_14279940_INS [dm3] 2L_14279940_INS [dm6]	A	ACATA	3.146e^-4	0.807	INTRON wb
2R	11689773	2R_11689773_SNP [dm3] 2R_15802268_SNP [dm6]	A	C	3.148e^-4	0.807	INTRON Zasp52 & 1 other
3L	4669995	3L_4669995_SNP [dm3] 3L_4669995_SNP [dm6]	A	C	3.150e^-4	0.807	INTRON axo	TF binding site BDTNP1_TFBS_twi
2L	7457007	2L_7457007_SNP [dm3] 2L_7457007_SNP [dm6]	G	C	3.152e^-4	0.807	NON_SYNONYMOUS_CODING Gr28b UPSTREAM Gr28b INTRON Gr28b
2R	18859366	2R_18859366_SNP [dm3] 2R_22971843_SNP [dm6]	A	G	3.152e^-4	0.807	INTERGENIC
3R	26255127	3R_26255127_SNP [dm3] 3R_30429405_SNP [dm6]	T	C	3.154e^-4	0.807	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12647879	3R_12647879_SNP [dm3] 3R_16822157_SNP [dm6]	A	T	3.156e^-4	0.807	INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	13166123	X_13166123_SNP [dm3] X_13272090_SNP [dm6]	A	G	3.163e^-4	0.807	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2R	19826572	2R_19826572_SNP [dm3] 2R_23939049_SNP [dm6]	G	A	3.164e^-4	0.807	SYNONYMOUS_CODING CG3735	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	19272684	2L_19272684_SNP [dm3] 2L_19272684_SNP [dm6]	G	C	3.165e^-4	0.807	INTRON CR44190
X	16428893	X_16428893_SNP [dm3] X_16534860_SNP [dm6]	G	A	3.171e^-4	0.807	INTERGENIC
3R	11862652	3R_11862652_SNP [dm3] 3R_16036930_SNP [dm6]	T	A	3.172e^-4	0.807	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7910248	X_7910248_SNP [dm3] X_8016215_SNP [dm6]	A	G	3.173e^-4	0.807	INTRON Tbh
3R	24304782	3R_24304782_SNP [dm3] 3R_28479060_SNP [dm6]	A	G	3.174e^-4	0.807	INTERGENIC
3R	20998499	3R_20998499_SNP [dm3] 3R_25172777_SNP [dm6]	G	A	3.176e^-4	0.807	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	9602792	3L_9602792_SNP [dm3] 3L_9609692_SNP [dm6]	A	C	3.178e^-4	0.807	SYNONYMOUS_CODING CG3280
3R	24270718	3R_24270718_SNP [dm3] 3R_28444996_SNP [dm6]	T	A	3.183e^-4	0.807	INTRON beat-VI
3L	1476727	3L_1476727_SNP [dm3] 3L_1476727_SNP [dm6]	G	T	3.184e^-4	0.807	SYNONYMOUS_CODING stet UPSTREAM robl62A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1461857	2L_1461857_SNP [dm3] 2L_1461857_SNP [dm6]	G	A	3.187e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16610939	2L_16610939_SNP [dm3] 2L_16610939_SNP [dm6]	T	G	3.200e^-4	0.807	DOWNSTREAM CG4631 INTRON CG42389
3R	12893606	3R_12893606_SNP [dm3] 3R_17067884_SNP [dm6]	G	T	3.201e^-4	0.807	INTRON Dad	TF binding site BDTNP1_TFBS_Med
2L	7797390	2L_7797390_SNP [dm3] 2L_7797390_SNP [dm6]	T	C	3.216e^-4	0.807	SPLICE_SITE_REGION Herp INTRON Herp	TF binding site mE1_TFBS_cad
2L	2583439	2L_2583439_SNP [dm3] 2L_2583439_SNP [dm6]	G	A	3.217e^-4	0.807	INTRON Drp1	TF binding site mE1_TFBS_chinmo
3R	19304658	3R_19304658_SNP [dm3] 3R_23478936_SNP [dm6]	A	T	3.240e^-4	0.807	INTERGENIC
2R	14626696	2R_14626696_SNP [dm3] 2R_18739191_SNP [dm6]	G	A	3.247e^-4	0.807	DOWNSTREAM CG33998 INTRON Hs3st-A EXON CR30121
3L	11198105	3L_11198105_INS [dm3] 3L_11205005_INS [dm6]	A	AAAGTTATA	3.251e^-4	0.807	INTRON Plod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23487303	3R_23487303_SNP [dm3] 3R_27661581_SNP [dm6]	C	T	3.253e^-4	0.807	UPSTREAM unc80 INTERGENIC
3L	4082356	3L_4082356_SNP [dm3] 3L_4082356_SNP [dm6]	A	T	3.257e^-4	0.807	INTRON Gad1
X	20526908	X_20526908_SNP [dm3] X_20655881_SNP [dm6]	G	A	3.257e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3291881	3L_3291881_SNP [dm3] 3L_3291881_SNP [dm6]	T	C	3.257e^-4	0.807	DOWNSTREAM CG12017 INTRON CG12009
2R	21050902	2R_21050902_SNP [dm3] 2R_25163379_SNP [dm6]	A	G	3.259e^-4	0.807	INTERGENIC
2R	19007042	2R_19007042_SNP [dm3] 2R_23119519_SNP [dm6]	T	A	3.261e^-4	0.807	INTERGENIC
2L	10542118	2L_10542118_SNP [dm3] 2L_10542118_SNP [dm6]	G	T	3.266e^-4	0.807	DOWNSTREAM CR44618 INTERGENIC
3L	10207306	3L_10207306_SNP [dm3] 3L_10214206_SNP [dm6]	A	G	3.267e^-4	0.807	INTERGENIC
3L	4521934	3L_4521934_SNP [dm3] 3L_4521934_SNP [dm6]	T	C	3.269e^-4	0.807	INTRON Tie
3R	13856404	3R_13856404_SNP [dm3] 3R_18030682_SNP [dm6]	T	G	3.278e^-4	0.807	INTERGENIC
X	8203805	X_8203805_SNP [dm3] X_8309772_SNP [dm6]	G	A	3.279e^-4	0.807	INTRON nAChRalpha3
2R	12642634	2R_12642634_SNP [dm3] 2R_16755129_SNP [dm6]	G	A	3.281e^-4	0.807	UTR_5_PRIME CG5267 DOWNSTREAM CG34189 INTRON unc-104
3L	7624604	3L_7624604_SNP [dm3] 3L_7631504_SNP [dm6]	A	T	3.283e^-4	0.807	INTRON CG33275
3L	1597840	3L_1597840_SNP [dm3] 3L_1597840_SNP [dm6]	C	T	3.287e^-4	0.807	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17492953	2R_17492953_SNP [dm3] 2R_21605448_SNP [dm6]	C	T	3.288e^-4	0.807	UPSTREAM CR45150 DOWNSTREAM CG10433 INTERGENIC
X	20945127	X_20945127_SNP [dm3] X_21074100_SNP [dm6]	A	T	3.288e^-4	0.807	INTRON bves
2R	16530280	2R_16530280_SNP [dm3] 2R_20642775_SNP [dm6]	C	T	3.296e^-4	0.807	SYNONYMOUS_CODING CG33786 UTR_3_PRIME CG33785 DOWNSTREAM CG11110	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9997822	3L_9997822_INS [dm3] 3L_10004722_INS [dm6]	A	AA	3.302e^-4	0.807	INTRON dpr6
2L	9090028	2L_9090028_SNP [dm3] 2L_9090028_SNP [dm6]	T	G	3.305e^-4	0.807	DOWNSTREAM Toll-4 INTERGENIC
X	3360312	X_3360312_SNP [dm3] X_3466279_SNP [dm6]	T	C	3.306e^-4	0.807	SYNONYMOUS_CODING CG12206 INTRON CR44999
3L	20042308	3L_20042308_SNP [dm3] 3L_20049208_SNP [dm6]	G	T	3.308e^-4	0.807	INTERGENIC
X	13983877	X_13983877_DEL [dm3] X_14089844_DEL [dm6]	GG	G	3.336e^-4	0.807	INTERGENIC
3R	24304775	3R_24304775_SNP [dm3] 3R_28479053_SNP [dm6]	A	G	3.347e^-4	0.807	INTERGENIC
3R	23872376	3R_23872376_SNP [dm3] 3R_28046654_SNP [dm6]	G	C	3.348e^-4	0.807	UPSTREAM CG34362 INTRON CG34362
2R	16276127	2R_16276127_SNP [dm3] 2R_20388622_SNP [dm6]	A	T	3.353e^-4	0.807	INTERGENIC
3R	20998528	3R_20998528_SNP [dm3] 3R_25172806_SNP [dm6]	A	C	3.355e^-4	0.807	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	13477975	3R_13477975_SNP [dm3] 3R_17652253_SNP [dm6]	C	T	3.355e^-4	0.807	INTRON CG14322 EXON CR45223
2R	19791295	2R_19791295_SNP [dm3] 2R_23903772_SNP [dm6]	C	T	3.357e^-4	0.807	START_GAINED CG13562 UTR_5_PRIME CG13562 DOWNSTREAM Lpt
3R	6968594	3R_6968594_SNP [dm3] 3R_11142872_SNP [dm6]	G	T	3.363e^-4	0.807	INTERGENIC
2R	16381345	2R_16381345_SNP [dm3] 2R_20493840_SNP [dm6]	C	T	3.369e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13789810	2R_13789810_SNP [dm3] 2R_17902305_SNP [dm6]	A	C	3.373e^-4	0.807	INTRON Elk
X	20529036	X_20529036_SNP [dm3] X_20658009_SNP [dm6]	G	T	3.380e^-4	0.807	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
2R	15274443	2R_15274443_SNP [dm3] 2R_19386938_SNP [dm6]	A	C	3.381e^-4	0.807	SPLICE_SITE_REGION CG10081 INTRON CG10081
3R	26913874	3R_26913874_SNP [dm3] 3R_31088152_SNP [dm6]	C	A	3.385e^-4	0.807	INTERGENIC
3R	13307699	3R_13307699_SNP [dm3] 3R_17481977_SNP [dm6]	C	G	3.390e^-4	0.807	SYNONYMOUS_CODING Dscam3 DOWNSTREAM Dscam3
3R	26384659	3R_26384659_SNP [dm3] 3R_30558937_SNP [dm6]	C	T	3.391e^-4	0.807	INTRON tmod & 1 other
X	1433509	X_1433509_SNP [dm3] X_1539476_SNP [dm6]	G	A	3.400e^-4	0.807	INTRON Mur2B
3L	11198405	3L_11198405_SNP [dm3] 3L_11205305_SNP [dm6]	C	T	3.404e^-4	0.807	INTRON Plod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17425435	2L_17425435_SNP [dm3] 2L_17425435_SNP [dm6]	G	A	3.410e^-4	0.807	INTRON Dif
3L	2996263	3L_2996263_SNP [dm3] 3L_2996263_SNP [dm6]	T	C	3.414e^-4	0.807	DOWNSTREAM CG2113 INTERGENIC
3R	4715319	3R_4715319_SNP [dm3] 3R_8889597_SNP [dm6]	G	A	3.417e^-4	0.807	INTRON pyd
3L	8746905	3L_8746905_SNP [dm3] 3L_8753805_SNP [dm6]	C	T	3.422e^-4	0.807	START_GAINED Fhos UTR_5_PRIME Fhos UPSTREAM Fhos
3L	16724896	3L_16724896_SNP [dm3] 3L_16731796_SNP [dm6]	A	G	3.425e^-4	0.807	UPSTREAM Dbp73D INTERGENIC	TF binding site mE1_TFBS_HSA
X	8513316	X_8513316_SNP [dm3] X_8619283_SNP [dm6]	T	A	3.441e^-4	0.807	INTERGENIC
3L	5947925	3L_5947925_SNP [dm3] 3L_5954825_SNP [dm6]	A	C	3.455e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7967623	3R_7967623_SNP [dm3] 3R_12141901_SNP [dm6]	T	C	3.459e^-4	0.807	INTRON dpr15	TF binding site BDTNP1_TFBS_da
3L	21260449	3L_21260449_SNP [dm3] 3L_21267349_SNP [dm6]	T	C	3.461e^-4	0.807	SYNONYMOUS_CODING CG9391 DOWNSTREAM Eip78C	TF binding site mE1_TFBS_cad
X	2697754	X_2697754_SNP [dm3] X_2803721_SNP [dm6]	A	T	3.463e^-4	0.807	INTRON kirre
3R	9863867	3R_9863867_SNP [dm3] 3R_14038145_SNP [dm6]	C	T	3.475e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24644556	3R_24644556_SNP [dm3] 3R_28818834_SNP [dm6]	G	A	3.487e^-4	0.807	SYNONYMOUS_CODING CG1523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9234883	2L_9234883_SNP [dm3] 2L_9234883_SNP [dm6]	G	A	3.487e^-4	0.807	INTRON tai	TF binding site mE1_TFBS_inv
2R	15563157	2R_15563157_SNP [dm3] 2R_19675652_SNP [dm6]	C	G	3.487e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8039784	3L_8039784_SNP [dm3] 3L_8046684_SNP [dm6]	A	G	3.489e^-4	0.807	SYNONYMOUS_CODING nmo	TF binding site mE1_TFBS_cad
3L	4521889	3L_4521889_SNP [dm3] 3L_4521889_SNP [dm6]	T	A	3.492e^-4	0.807	INTRON Tie
3L	10919044	3L_10919044_SNP [dm3] 3L_10925944_SNP [dm6]	G	C	3.495e^-4	0.807	INTERGENIC
3L	4521998	3L_4521998_SNP [dm3] 3L_4521998_SNP [dm6]	C	A	3.495e^-4	0.807	INTRON Tie
3R	6137699	3R_6137699_SNP [dm3] 3R_10311977_SNP [dm6]	T	G	3.498e^-4	0.807	UPSTREAM CG6293 DOWNSTREAM Bruce INTERGENIC	TF binding site mE1_TFBS_cad
3L	19925413	3L_19925413_SNP [dm3] 3L_19932313_SNP [dm6]	C	T	3.505e^-4	0.807	UTR_3_PRIME RhoGDI
2R	18833703	2R_18833703_SNP [dm3] 2R_22946180_SNP [dm6]	G	A	3.505e^-4	0.807	INTERGENIC
3L	9607068	3L_9607068_SNP [dm3] 3L_9613968_SNP [dm6]	T	C	3.506e^-4	0.807	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11296298	2L_11296298_SNP [dm3] 2L_11296298_SNP [dm6]	C	T	3.506e^-4	0.807	INTERGENIC
2R	17644142	2R_17644142_SNP [dm3] 2R_21756637_SNP [dm6]	T	G	3.507e^-4	0.807	UPSTREAM Grx-1 INTERGENIC
3R	23248192	3R_23248192_SNP [dm3] 3R_27422470_SNP [dm6]	G	A	3.510e^-4	0.807	INTRON side
2R	12856352	2R_12856352_SNP [dm3] 2R_16968847_SNP [dm6]	C	T	3.511e^-4	0.807	UPSTREAM CR44377 DOWNSTREAM tRNA:G3:53E INTERGENIC
2L	12474776	2L_12474776_SNP [dm3] 2L_12474776_SNP [dm6]	C	T	3.515e^-4	0.807	INTRON bun
3L	4082376	3L_4082376_SNP [dm3] 3L_4082376_SNP [dm6]	C	A	3.517e^-4	0.807	INTRON Gad1
3R	20685992	3R_20685992_SNP [dm3] 3R_24860270_SNP [dm6]	A	G	3.518e^-4	0.807	SYNONYMOUS_CODING CG13639 UPSTREAM ppk22
2R	10013476	2R_10013476_SNP [dm3] 2R_14125971_SNP [dm6]	T	A	3.522e^-4	0.807	INTRON Prosap
X	20316750	X_20316750_SNP [dm3] X_20445723_SNP [dm6]	C	T	3.524e^-4	0.807	UPSTREAM CG42578 DOWNSTREAM CG1695 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4521888	3L_4521888_SNP [dm3] 3L_4521888_SNP [dm6]	G	A	3.528e^-4	0.807	INTRON Tie
3R	24435913	3R_24435913_SNP [dm3] 3R_28610191_SNP [dm6]	C	A	3.529e^-4	0.807	INTRON CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2737960	3R_2737960_SNP [dm3] 3R_6912238_SNP [dm6]	G	T	3.530e^-4	0.807	INTRON Antp	insulator Insulator_Class_II.mE01 Insulator_Class_I.mE01 silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11284893	2R_11284893_SNP [dm3] 2R_15397388_SNP [dm6]	G	C	3.532e^-4	0.807	INTERGENIC
2L	2583414	2L_2583414_SNP [dm3] 2L_2583414_SNP [dm6]	A	T	3.537e^-4	0.807	INTRON Drp1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7800828	2L_7800828_SNP [dm3] 2L_7800828_SNP [dm6]	C	G	3.558e^-4	0.807	NON_SYNONYMOUS_CODING r2d2 UPSTREAM Herp DOWNSTREAM cdc14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3703837	X_3703837_SNP [dm3] X_3809804_SNP [dm6]	G	A	3.567e^-4	0.807	SYNONYMOUS_CODING fd3F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	9619267	3R_9619267_SNP [dm3] 3R_13793545_SNP [dm6]	C	T	3.567e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19403123	3R_19403123_DEL [dm3] 3R_23577401_DEL [dm6]	AA	A	3.574e^-4	0.807	INTRON beat-IV
3L	1589011	3L_1589011_SNP [dm3] 3L_1589011_SNP [dm6]	A	C	3.581e^-4	0.807	INTRON CG13917
2R	18410562	2R_18410562_SNP [dm3] 2R_22523057_SNP [dm6]	T	A	3.585e^-4	0.807	INTRON px
2R	14642351	2R_14642351_SNP [dm3] 2R_18754846_SNP [dm6]	C	T	3.587e^-4	0.807	UPSTREAM Cyp12b2 DOWNSTREAM Hs3st-A INTERGENIC
X	16300636	X_16300636_DEL [dm3] X_16406603_DEL [dm6]	AATA	A	3.589e^-4	0.807	UTR_5_PRIME CG4301 INTRON CG4301
3R	13756070	3R_13756070_SNP [dm3] 3R_17930348_SNP [dm6]	G	C	3.590e^-4	0.807	INTRON cpo
3R	13052725	3R_13052725_SNP [dm3] 3R_17227003_SNP [dm6]	A	G	3.592e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21748542	3R_21748542_SNP [dm3] 3R_25922820_SNP [dm6]	T	C	3.593e^-4	0.807	UPSTREAM CG14546 DOWNSTREAM CCAP-R INTERGENIC
2L	12524614	2L_12524614_SNP [dm3] 2L_12524614_SNP [dm6]	C	T	3.601e^-4	0.807	INTRON bun
3R	8075703	3R_8075703_SNP [dm3] 3R_12249981_SNP [dm6]	G	T	3.603e^-4	0.807	INTERGENIC
3L	8748838	3L_8748838_SNP [dm3] 3L_8755738_SNP [dm6]	G	A	3.604e^-4	0.807	UPSTREAM CG6576 INTRON Fhos
2L	10421476	2L_10421476_SNP [dm3] 2L_10421476_SNP [dm6]	C	G	3.604e^-4	0.807	NON_SYNONYMOUS_CODING pie DOWNSTREAM RfC3	TF binding site mE1_TFBS_sens
X	20528944	X_20528944_SNP [dm3] X_20657917_SNP [dm6]	C	T	3.610e^-4	0.807	START_GAINED Cyp6v1 UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
3L	11319371	3L_11319371_SNP [dm3] 3L_11326271_SNP [dm6]	A	C	3.612e^-4	0.807	INTERGENIC
2L	5372497	2L_5372497_DEL [dm3] 2L_5372497_DEL [dm6]	CAGAGCCG	C	3.616e^-4	0.807	INTERGENIC
3L	9958423	3L_9958423_SNP [dm3] 3L_9965323_SNP [dm6]	T	C	3.617e^-4	0.807	UTR_3_PRIME CG34356
3L	12255469	3L_12255469_SNP [dm3] 3L_12262369_SNP [dm6]	T	C	3.619e^-4	0.807	INTRON app	TF binding site mE1_TFBS_inv
3L	3014633	3L_3014633_SNP [dm3] 3L_3014633_SNP [dm6]	T	C	3.621e^-4	0.807	DOWNSTREAM CG32488 INTERGENIC
X	13253092	X_13253092_INS [dm3] X_13359059_INS [dm6]	T	TTGCTCTGCCATAATTT...	3.622e^-4	0.807	UPSTREAM Syt12 INTERGENIC
3R	11235596	3R_11235596_SNP [dm3] 3R_15409874_SNP [dm6]	C	T	3.625e^-4	0.807	INTRON Atx2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1586810	3L_1586810_SNP [dm3] 3L_1586810_SNP [dm6]	G	A	3.627e^-4	0.807	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	8751201	3L_8751201_SNP [dm3] 3L_8758101_SNP [dm6]	C	T	3.628e^-4	0.807	DOWNSTREAM CG6576 INTRON Fhos
X	14788103	X_14788103_SNP [dm3] X_14894070_SNP [dm6]	G	T	3.630e^-4	0.807	INTRON Flo2 & 1 other
3L	2789351	3L_2789351_SNP [dm3] 3L_2789351_SNP [dm6]	G	A	3.632e^-4	0.807	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5141825	3L_5141825_SNP [dm3] 3L_5148725_SNP [dm6]	A	C	3.633e^-4	0.807	SPLICE_SITE_REGION Aats-ala-m INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo
X	9666178	X_9666178_SNP [dm3] X_9772145_SNP [dm6]	T	G	3.638e^-4	0.807	INTERGENIC
X	8203806	X_8203806_SNP [dm3] X_8309773_SNP [dm6]	A	T	3.643e^-4	0.807	INTRON nAChRalpha3
3R	11227286	3R_11227286_SNP [dm3] 3R_15401564_SNP [dm6]	T	A	3.644e^-4	0.807	UTR_3_PRIME Rbp	TF binding site mE1_TFBS_HSA
3L	21756069	3L_21756069_SNP [dm3] 3L_21762969_SNP [dm6]	G	T	3.648e^-4	0.807	INTRON Syn1
2L	10066965	2L_10066965_SNP [dm3] 2L_10066965_SNP [dm6]	A	G	3.648e^-4	0.807	INTRON CG44153
2R	10013626	2R_10013626_SNP [dm3] 2R_14126121_SNP [dm6]	A	G	3.652e^-4	0.807	INTRON Prosap
X	19878878	X_19878878_SNP [dm3] X_19984845_SNP [dm6]	G	A	3.653e^-4	0.807	INTERGENIC
3R	22087669	3R_22087669_SNP [dm3] 3R_26261947_SNP [dm6]	G	A	3.672e^-4	0.807	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC
3L	20132087	3L_20132087_SNP [dm3] 3L_20138987_SNP [dm6]	A	T	3.673e^-4	0.807	UTR_3_PRIME gig DOWNSTREAM CG7328
3R	4376584	3R_4376584_SNP [dm3] 3R_8550862_SNP [dm6]	A	T	3.683e^-4	0.807	INTERGENIC
2R	12543038	2R_12543038_SNP [dm3] 2R_16655533_SNP [dm6]	T	C	3.689e^-4	0.807	UTR_3_PRIME Picot UPSTREAM Nach
3R	13886503	3R_13886503_SNP [dm3] 3R_18060781_SNP [dm6]	G	T	3.710e^-4	0.807	INTERGENIC
X	10469521	X_10469521_SNP [dm3] X_10575488_SNP [dm6]	A	G	3.714e^-4	0.807	SYNONYMOUS_CODING spri
2R	19598683	2R_19598683_SNP [dm3] 2R_23711160_SNP [dm6]	T	C	3.716e^-4	0.807	INTERGENIC
2R	14651109	2R_14651109_SNP [dm3] 2R_18763604_SNP [dm6]	T	C	3.716e^-4	0.807	INTRON Mctp
2R	14651209	2R_14651209_SNP [dm3] 2R_18763704_SNP [dm6]	A	C	3.716e^-4	0.807	INTRON Mctp
3L	2114578	3L_2114578_SNP [dm3] 3L_2114578_SNP [dm6]	T	G	3.716e^-4	0.807	INTRON sls
3L	12256736	3L_12256736_SNP [dm3] 3L_12263636_SNP [dm6]	C	A	3.718e^-4	0.807	INTRON app
3R	12243976	3R_12243976_SNP [dm3] 3R_16418254_SNP [dm6]	G	C	3.719e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	17191861	3L_17191861_SNP [dm3] 3L_17198761_SNP [dm6]	G	A	3.723e^-4	0.807	INTRON Rbp6
3R	26914309	3R_26914309_SNP [dm3] 3R_31088587_SNP [dm6]	T	A	3.723e^-4	0.807	INTERGENIC
3R	12890097	3R_12890097_SNP [dm3] 3R_17064375_SNP [dm6]	T	A	3.727e^-4	0.807	INTRON Dad	TF binding site mE1_TFBS_Trl
3R	16174673	3R_16174673_SNP [dm3] 3R_20348951_SNP [dm6]	A	T	3.729e^-4	0.807	INTERGENIC
3R	2363676	3R_2363676_SNP [dm3] 3R_6537954_SNP [dm6]	C	T	3.730e^-4	0.807	INTRON dpr11
3R	7645254	3R_7645254_SNP [dm3] 3R_11819532_SNP [dm6]	C	A	3.735e^-4	0.807	UPSTREAM CoVa & 1 other DOWNSTREAM CG6950 INTRON CoVa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	2390794	3R_2390794_SNP [dm3] 3R_6565072_SNP [dm6]	T	A	3.735e^-4	0.807	INTRON dpr11
3L	1529646	3L_1529646_SNP [dm3] 3L_1529646_SNP [dm6]	G	T	3.738e^-4	0.807	SYNONYMOUS_CODING Ir62a INTRON CG12090
3R	2343890	3R_2343890_SNP [dm3] 3R_6518168_SNP [dm6]	T	C	3.744e^-4	0.807	INTERGENIC
2R	9311316	2R_9311316_SNP [dm3] 2R_13423811_SNP [dm6]	C	T	3.752e^-4	0.807	UPSTREAM CG30060 INTRON CG42321
3R	2427200	3R_2427200_SNP [dm3] 3R_6601478_SNP [dm6]	T	C	3.767e^-4	0.807	SYNONYMOUS_CODING CG31482	TF binding site mE1_TFBS_HSA
X	8298098	X_8298098_SNP [dm3] X_8404065_SNP [dm6]	T	G	3.770e^-4	0.807	UTR_3_PRIME CG10555 DOWNSTREAM CG11190 & 1 other	TF binding site mE1_TFBS_HSA
2L	12202812	2L_12202812_SNP [dm3] 2L_12202812_SNP [dm6]	G	A	3.770e^-4	0.807	INTRON aret
2R	14624251	2R_14624251_DEL [dm3] 2R_18736746_DEL [dm6]	AAAACAGAACATTCA...	A	3.772e^-4	0.807	INTRON Hs3st-A	TF binding site mE1_TFBS_kn
X	273938	X_273938_SNP [dm3] X_379905_SNP [dm6]	A	G	3.780e^-4	0.807	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	5942413	3L_5942413_SNP [dm3] 3L_5949313_SNP [dm6]	A	T	3.790e^-4	0.807	INTRON CG33993
2R	20001125	2R_20001125_SNP [dm3] 2R_24113602_SNP [dm6]	A	T	3.792e^-4	0.807	UPSTREAM CG3253 INTRON CG4049	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16534640	X_16534640_SNP [dm3] X_16640607_SNP [dm6]	C	T	3.792e^-4	0.807	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	4921514	2R_4921514_SNP [dm3] 2R_9034009_SNP [dm6]	C	T	3.793e^-4	0.807	INTERGENIC
2L	13238052	2L_13238052_SNP [dm3] 2L_13238052_SNP [dm6]	T	G	3.795e^-4	0.807	INTRON CG5867
3R	25380550	3R_25380550_SNP [dm3] 3R_29554828_SNP [dm6]	G	A	3.797e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25479088	3R_25479088_SNP [dm3] 3R_29653366_SNP [dm6]	T	A	3.798e^-4	0.807	INTRON Dop1R2	transposable element FlyBase
2L	2304500	2L_2304500_SNP [dm3] 2L_2304500_SNP [dm6]	T	C	3.807e^-4	0.807	INTERGENIC
2L	13954291	2L_13954291_SNP [dm3] 2L_13954291_SNP [dm6]	G	A	3.810e^-4	0.807	INTRON Ance-3
2R	16464383	2R_16464383_DEL [dm3] 2R_20576878_DEL [dm6]	AA	A	3.813e^-4	0.807	INTRON qsm
3L	8994664	3L_8994664_SNP [dm3] 3L_9001564_SNP [dm6]	T	C	3.842e^-4	0.807	SYNONYMOUS_CODING CG5087	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	2293261	2L_2293261_SNP [dm3] 2L_2293261_SNP [dm6]	T	G	3.844e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	16009783	3L_16009783_SNP [dm3] 3L_16016683_SNP [dm6]	G	A	3.851e^-4	0.807	DOWNSTREAM CR43950 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	19453826	2R_19453826_SNP [dm3] 2R_23566303_SNP [dm6]	T	C	3.852e^-4	0.807	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8306110	2L_8306110_SNP [dm3] 2L_8306110_SNP [dm6]	T	C	3.853e^-4	0.807	SYNONYMOUS_CODING CG7840 DOWNSTREAM Scgalpha & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2297970	3R_2297970_SNP [dm3] 3R_6472248_SNP [dm6]	G	T	3.855e^-4	0.807	INTERGENIC
3R	26451720	3R_26451720_SNP [dm3] 3R_30625998_SNP [dm6]	T	G	3.863e^-4	0.807	UPSTREAM CR44136 INTERGENIC
3L	16899689	3L_16899689_SNP [dm3] 3L_16906589_SNP [dm6]	T	A	3.868e^-4	0.807	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_sens
3L	2114567	3L_2114567_SNP [dm3] 3L_2114567_SNP [dm6]	A	T	3.874e^-4	0.807	INTRON sls
2L	10344542	2L_10344542_SNP [dm3] 2L_10344542_SNP [dm6]	T	G	3.878e^-4	0.807	START_GAINED CG5022 UTR_5_PRIME CG5022 DOWNSTREAM Sps2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13163216	X_13163216_SNP [dm3] X_13269183_SNP [dm6]	A	C	3.883e^-4	0.807	INTRON HDAC4
3R	2359183	3R_2359183_SNP [dm3] 3R_6533461_SNP [dm6]	C	T	3.892e^-4	0.807	INTRON dpr11
X	10089582	X_10089582_SNP [dm3] X_10195549_SNP [dm6]	G	A	3.894e^-4	0.807	DOWNSTREAM CG43902 INTRON CR44894	TF binding site BDTNP1_TFBS_dl
3R	5988317	3R_5988317_SNP [dm3] 3R_10162595_SNP [dm6]	A	T	3.900e^-4	0.807	INTRON Best1
2R	1819481	2R_1819481_SNP [dm3] 2R_5931976_SNP [dm6]	C	A	3.913e^-4	0.807	DOWNSTREAM CG43366 INTERGENIC	transposable element FlyBase
3L	3759134	3L_3759134_INS [dm3] 3L_3759134_INS [dm6]	T	TT	3.914e^-4	0.807	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_HSA
2L	9676137	2L_9676137_SNP [dm3] 2L_9676137_SNP [dm6]	G	A	3.921e^-4	0.807	INTERGENIC
2L	16391925	2L_16391925_SNP [dm3] 2L_16391925_SNP [dm6]	G	A	3.921e^-4	0.807	INTERGENIC
3R	14731671	3R_14731671_SNP [dm3] 3R_18905949_SNP [dm6]	A	G	3.925e^-4	0.807	UPSTREAM EndoA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16558266	X_16558266_SNP [dm3] X_16664233_SNP [dm6]	C	T	3.926e^-4	0.807	NON_SYNONYMOUS_CODING CG15865 INTRON r
2L	9990195	2L_9990195_INS [dm3] 2L_9990195_INS [dm6]	A	AT	3.926e^-4	0.807	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	16721098	3R_16721098_DEL [dm3] 3R_20895376_DEL [dm6]	GCTATTG	G	3.927e^-4	0.807	UTR_3_PRIME CG10830
3R	10293411	3R_10293411_SNP [dm3] 3R_14467689_SNP [dm6]	T	A	3.934e^-4	0.807	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	302659	X_302659_SNP [dm3] X_408626_SNP [dm6]	G	A	3.935e^-4	0.807	INTRON CG32816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_h
3L	4959820	3L_4959820_SNP [dm3] 3L_4959820_SNP [dm6]	T	C	3.952e^-4	0.807	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10904205	3R_10904205_SNP [dm3] 3R_15078483_SNP [dm6]	A	T	3.956e^-4	0.807	DOWNSTREAM CG6974 & 1 other INTERGENIC
3L	7229043	3L_7229043_SNP [dm3] 3L_7235943_SNP [dm6]	A	G	3.956e^-4	0.807	UTR_3_PRIME CG14826 DOWNSTREAM CG14826 & 1 other
3L	3193641	3L_3193641_SNP [dm3] 3L_3193641_SNP [dm6]	C	T	3.959e^-4	0.807	INTRON Hsp83	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14806762	2R_14806762_SNP [dm3] 2R_18919257_SNP [dm6]	G	A	3.965e^-4	0.807	INTRON sano
X	2888923	X_2888923_INS [dm3] X_2994890_INS [dm6]	C	CGAGAAATCC	3.965e^-4	0.807	UTR_5_PRIME kirre
3R	5845422	3R_5845422_SNP [dm3] 3R_10019700_SNP [dm6]	C	G	3.969e^-4	0.807	SPLICE_SITE_REGION Mical INTRON Mical	TF binding site mE1_TFBS_cad
3R	24304443	3R_24304443_SNP [dm3] 3R_28478721_SNP [dm6]	C	G	3.969e^-4	0.807	INTERGENIC
3L	4063038	3L_4063038_SNP [dm3] 3L_4063038_SNP [dm6]	T	C	3.971e^-4	0.807	SYNONYMOUS_CODING dib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2712975	2L_2712975_DEL [dm3] 2L_2712975_DEL [dm6]	TT	T	3.972e^-4	0.807	INTRON CG31690
3R	7760836	3R_7760836_SNP [dm3] 3R_11935114_SNP [dm6]	A	G	3.978e^-4	0.807	INTRON Cad87A
2R	15197832	2R_15197832_INS [dm3] 2R_19310327_INS [dm6]	T	TT	3.981e^-4	0.807	DOWNSTREAM Rgk1 INTRON EndoB	TF binding site mE1_TFBS_sens
3R	12515908	3R_12515908_SNP [dm3] 3R_16690186_SNP [dm6]	G	A	3.982e^-4	0.807	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11707176	2L_11707176_SNP [dm3] 2L_11707176_SNP [dm6]	C	T	3.991e^-4	0.807	INTERGENIC
2R	18858978	2R_18858978_SNP [dm3] 2R_22971455_SNP [dm6]	C	T	3.991e^-4	0.807	INTERGENIC
3R	7751802	3R_7751802_SNP [dm3] 3R_11926080_SNP [dm6]	A	T	4.000e^-4	0.807	INTRON Cad87A
3L	7432962	3L_7432962_SNP [dm3] 3L_7439862_SNP [dm6]	A	G	4.001e^-4	0.807	UTR_3_PRIME sphinx2 UPSTREAM sphinx1 INTRON CG42458	transposable element FlyBase
2R	18508577	2R_18508577_DEL [dm3] 2R_22621072_DEL [dm6]	AA	A	4.004e^-4	0.807	UTR_5_PRIME CG33143	TF binding site mE1_TFBS_inv
3R	13614610	3R_13614610_SNP [dm3] 3R_17788888_SNP [dm6]	G	T	4.005e^-4	0.807	INTRON CG43102
3R	25550210	3R_25550210_SNP [dm3] 3R_29724488_SNP [dm6]	A	G	4.017e^-4	0.807	UPSTREAM CG18731 DOWNSTREAM Pcd INTRON CG7593	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	7967624	3R_7967624_SNP [dm3] 3R_12141902_SNP [dm6]	C	G	4.018e^-4	0.807	INTRON dpr15	TF binding site BDTNP1_TFBS_da
2R	17686619	2R_17686619_SNP [dm3] 2R_21799114_SNP [dm6]	G	A	4.022e^-4	0.807	NON_SYNONYMOUS_CODING CG18735 DOWNSTREAM CG4386
3R	22941908	3R_22941908_SNP [dm3] 3R_27116186_SNP [dm6]	A	G	4.023e^-4	0.807	NON_SYNONYMOUS_CODING CG6066 UPSTREAM CG5880	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9473342	3L_9473342_SNP [dm3] 3L_9480242_SNP [dm6]	T	C	4.030e^-4	0.807	SYNONYMOUS_CODING Jarid2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	1312225	2R_1312225_SNP [dm3] 2R_5424720_SNP [dm6]	A	G	4.033e^-4	0.807	INTRON laccase2	transposable element FlyBase
3R	23657466	3R_23657466_DEL [dm3] 3R_27831744_DEL [dm6]	CC	C	4.036e^-4	0.807	INTRON CG34353
3R	15652728	3R_15652728_SNP [dm3] 3R_19827006_SNP [dm6]	C	T	4.039e^-4	0.807	INTRON bnl	TF binding site mE1_TFBS_HSA
3R	8428746	3R_8428746_SNP [dm3] 3R_12603024_SNP [dm6]	G	A	4.043e^-4	0.807	INTERGENIC
3R	19008926	3R_19008926_SNP [dm3] 3R_23183204_SNP [dm6]	C	T	4.044e^-4	0.807	INTRON Irk1
3L	6965217	3L_6965217_SNP [dm3] 3L_6972117_SNP [dm6]	G	A	4.056e^-4	0.807	SYNONYMOUS_CODING CG10063 DOWNSTREAM CG9953 & 1 other
2R	11069110	2R_11069110_SNP [dm3] 2R_15181605_SNP [dm6]	T	C	4.057e^-4	0.807	INTRON igl
X	19505497	X_19505497_SNP [dm3] X_19611464_SNP [dm6]	A	G	4.074e^-4	0.807	UPSTREAM Tyler & 1 other DOWNSTREAM CG14207 INTERGENIC	TF binding site mE1_TFBS_cad
3R	13885818	3R_13885818_SNP [dm3] 3R_18060096_SNP [dm6]	T	G	4.078e^-4	0.807	INTERGENIC
3L	18441227	3L_18441227_INS [dm3] 3L_18448127_INS [dm6]	T	TGCA	4.085e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12138648	3L_12138648_SNP [dm3] 3L_12145548_SNP [dm6]	T	C	4.087e^-4	0.807	UPSTREAM Nrx-IV INTRON CG5642	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	9822562	3R_9822562_SNP [dm3] 3R_13996840_SNP [dm6]	A	C	4.089e^-4	0.807	INTRON rdx
3R	27059005	3R_27059005_SNP [dm3] 3R_31233283_SNP [dm6]	C	T	4.089e^-4	0.807	SYNONYMOUS_CODING CG15564 UPSTREAM CG15563	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4959600	3L_4959600_SNP [dm3] 3L_4959600_SNP [dm6]	A	C	4.097e^-4	0.807	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	4065573	X_4065573_SNP [dm3] X_4171540_SNP [dm6]	C	G	4.098e^-4	0.807	INTRON Fas2	TF binding site mE1_TFBS_inv
3L	9607230	3L_9607230_SNP [dm3] 3L_9614130_SNP [dm6]	G	A	4.099e^-4	0.807	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	866829	X_866829_SNP [dm3] X_972796_SNP [dm6]	G	A	4.100e^-4	0.807	INTERGENIC
3L	9964373	3L_9964373_SNP [dm3] 3L_9971273_SNP [dm6]	C	T	4.102e^-4	0.807	SYNONYMOUS_CODING CG6674 DOWNSTREAM Nc	TF binding site BDTNP1_TFBS_dl
2L	6318384	2L_6318384_SNP [dm3] 2L_6318384_SNP [dm6]	C	T	4.112e^-4	0.807	INTRON Ddr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2348867	3R_2348867_SNP [dm3] 3R_6523145_SNP [dm6]	A	T	4.117e^-4	0.807	INTERGENIC
2R	9644231	2R_9644231_SNP [dm3] 2R_13756726_SNP [dm6]	G	C	4.120e^-4	0.807	NON_SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13810039	2R_13810039_SNP [dm3] 2R_17922534_SNP [dm6]	G	A	4.120e^-4	0.807	INTRON Elk
X	18932357	X_18932357_SNP [dm3] X_19038324_SNP [dm6]	A	T	4.130e^-4	0.807	INTERGENIC
3R	12129615	3R_12129615_SNP [dm3] 3R_16303893_SNP [dm6]	A	T	4.135e^-4	0.807	UTR_3_PRIME gish
3L	19957218	3L_19957218_SNP [dm3] 3L_19964118_SNP [dm6]	G	T	4.140e^-4	0.807	INTRON Ac76E
3L	16724999	3L_16724999_SNP [dm3] 3L_16731899_SNP [dm6]	T	A	4.144e^-4	0.807	INTERGENIC
3R	14309720	3R_14309720_SNP [dm3] 3R_18483998_SNP [dm6]	C	A	4.146e^-4	0.807	INTRON fru
2L	16148643	2L_16148643_SNP [dm3] 2L_16148643_SNP [dm6]	C	T	4.159e^-4	0.807	INTERGENIC
3L	15024652	3L_15024652_SNP [dm3] 3L_15031552_SNP [dm6]	G	T	4.163e^-4	0.807	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2888158	X_2888158_SNP [dm3] X_2994125_SNP [dm6]	C	A	4.172e^-4	0.807	INTRON kirre	TF binding site mE1_TFBS_HSA
2R	13819112	2R_13819112_SNP [dm3] 2R_17931607_SNP [dm6]	C	G	4.173e^-4	0.807	INTERGENIC
3R	19193395	3R_19193395_SNP [dm3] 3R_23367673_SNP [dm6]	A	C	4.173e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_inv
X	7854213	X_7854213_SNP [dm3] X_7960180_SNP [dm6]	T	C	4.177e^-4	0.807	UPSTREAM sws INTRON sws EXON CR45620	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	2425313	3R_2425313_SNP [dm3] 3R_6599591_SNP [dm6]	G	A	4.180e^-4	0.807	INTERGENIC
X	9666149	X_9666149_SNP [dm3] X_9772116_SNP [dm6]	G	C	4.181e^-4	0.807	INTERGENIC
3R	11986364	3R_11986364_SNP [dm3] 3R_16160642_SNP [dm6]	G	A	4.184e^-4	0.807	INTRON CG6006
2L	13281512	2L_13281512_SNP [dm3] 2L_13281512_SNP [dm6]	A	C	4.191e^-4	0.807	SYNONYMOUS_CODING CG44085 INTRON CG44085
2L	11622232	2L_11622232_SNP [dm3] 2L_11622232_SNP [dm6]	C	T	4.195e^-4	0.807	SYNONYMOUS_CODING kek2	TF binding site mE1_TFBS_chinmo
3L	2474704	3L_2474704_INS [dm3] 3L_2474704_INS [dm6]	G	TA	4.214e^-4	0.807	UTR_3_PRIME CG16762 INTRON CG45186
2L	10344567	2L_10344567_SNP [dm3] 2L_10344567_SNP [dm6]	C	T	4.215e^-4	0.807	UTR_5_PRIME CG5022 DOWNSTREAM Sps2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12130725	2R_12130725_SNP [dm3] 2R_16243220_SNP [dm6]	A	T	4.223e^-4	0.807	UTR_3_PRIME CngA
2R	17684867	2R_17684867_SNP [dm3] 2R_21797362_SNP [dm6]	G	T	4.227e^-4	0.807	DOWNSTREAM CG34204 & 1 other INTERGENIC
2R	20190214	2R_20190214_SNP [dm3] 2R_24302691_SNP [dm6]	T	G	4.227e^-4	0.807	INTERGENIC
3R	7676149	3R_7676149_SNP [dm3] 3R_11850427_SNP [dm6]	G	A	4.228e^-4	0.807	INTRON CG6959
2L	2304517	2L_2304517_SNP [dm3] 2L_2304517_SNP [dm6]	C	T	4.232e^-4	0.807	INTERGENIC
3L	17059624	3L_17059624_SNP [dm3] 3L_17066524_SNP [dm6]	T	A	4.238e^-4	0.807	DOWNSTREAM Rbp6 INTRON Rbp6
3L	14504066	3L_14504066_SNP [dm3] 3L_14510966_SNP [dm6]	C	T	4.239e^-4	0.807	SYNONYMOUS_CODING bbg UPSTREAM bbg
X	21104936	X_21104936_SNP [dm3] X_21233909_SNP [dm6]	C	A	4.240e^-4	0.807	INTRON CG32521
3R	20933748	3R_20933748_SNP [dm3] 3R_25108026_SNP [dm6]	A	G	4.241e^-4	0.807	SPLICE_SITE_REGION CG34027 INTRON CG34027
3R	7760008	3R_7760008_SNP [dm3] 3R_11934286_SNP [dm6]	A	T	4.244e^-4	0.807	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12892517	2R_12892517_SNP [dm3] 2R_17005012_SNP [dm6]	C	A	4.246e^-4	0.807	UPSTREAM CG6805 INTRON NiPp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7537782	2L_7537782_SNP [dm3] 2L_7537782_SNP [dm6]	G	C	4.250e^-4	0.807	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	5128026	3R_5128026_SNP [dm3] 3R_9302304_SNP [dm6]	T	C	4.258e^-4	0.807	INTRON CG8861
3R	24067968	3R_24067968_SNP [dm3] 3R_28242246_SNP [dm6]	A	C	4.261e^-4	0.807	INTERGENIC
3L	9864005	3L_9864005_SNP [dm3] 3L_9870905_SNP [dm6]	G	T	4.262e^-4	0.807	DOWNSTREAM CG8108 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18856191	2R_18856191_SNP [dm3] 2R_22968668_SNP [dm6]	G	A	4.279e^-4	0.807	INTERGENIC
3R	2347965	3R_2347965_SNP [dm3] 3R_6522243_SNP [dm6]	G	C	4.281e^-4	0.807	INTERGENIC
3R	22902362	3R_22902362_SNP [dm3] 3R_27076640_SNP [dm6]	C	T	4.284e^-4	0.807	INTRON CG14257
3R	8684844	3R_8684844_SNP [dm3] 3R_12859122_SNP [dm6]	T	C	4.288e^-4	0.807	INTRON CG10126
3R	23883794	3R_23883794_SNP [dm3] 3R_28058072_SNP [dm6]	A	C	4.289e^-4	0.807	INTRON CG34362
2R	19393900	2R_19393900_SNP [dm3] 2R_23506377_SNP [dm6]	G	A	4.291e^-4	0.807	DOWNSTREAM CR43794 INTERGENIC
3L	9607218	3L_9607218_SNP [dm3] 3L_9614118_SNP [dm6]	A	T	4.296e^-4	0.807	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	2655593	3R_2655593_SNP [dm3] 3R_6829871_SNP [dm6]	C	T	4.299e^-4	0.807	INTRON Scr	regulatory region REDfly_CRMs
3L	13705299	3L_13705299_SNP [dm3] 3L_13712199_SNP [dm6]	C	T	4.323e^-4	0.807	INTRON bru-3
3R	5484042	3R_5484042_SNP [dm3] 3R_9658320_SNP [dm6]	C	T	4.324e^-4	0.807	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9990199	2L_9990199_SNP [dm3] 2L_9990199_SNP [dm6]	G	A	4.325e^-4	0.807	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	9651505	3R_9651505_SNP [dm3] 3R_13825783_SNP [dm6]	T	C	4.330e^-4	0.807	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.774e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.02732

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	8.0572	0.0178

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2167 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	4.376e^-7	0.657	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3R	8286174	3R_8286174_SNP [dm3] 3R_12460452_SNP [dm6]	T	C	1.155e^-6	0.657	UTR_5_PRIME CG12267 UPSTREAM CG12267 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10633377	3L_10633377_SNP [dm3] 3L_10640277_SNP [dm6]	A	G	1.659e^-6	0.657	DOWNSTREAM CG32066 & 2 others INTERGENIC
3R	17000503	3R_17000503_SNP [dm3] 3R_21174781_SNP [dm6]	G	A	2.405e^-6	0.657	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	2.471e^-6	0.657	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
3L	13290636	3L_13290636_SNP [dm3] 3L_13297536_SNP [dm6]	T	C	2.688e^-6	0.657	UPSTREAM Sfp70A4 & 1 other DOWNSTREAM CR45255 EXON CR45253
3R	8286177	3R_8286177_INS [dm3] 3R_12460455_INS [dm6]	T	TT	3.002e^-6	0.657	UTR_5_PRIME CG12267 UPSTREAM CG12267 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13656491	3R_13656491_SNP [dm3] 3R_17830769_SNP [dm6]	T	A	3.093e^-6	0.657	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8938931	2R_8938931_SNP [dm3] 2R_13051426_SNP [dm6]	G	T	3.150e^-6	0.657	INTERGENIC
3R	13660682	3R_13660682_SNP [dm3] 3R_17834960_SNP [dm6]	T	C	3.857e^-6	0.724	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2L	8510360	2L_8510360_SNP [dm3] 2L_8510360_SNP [dm6]	T	A	5.332e^-6	0.819	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21009368	3R_21009368_SNP [dm3] 3R_25183646_SNP [dm6]	T	A	6.190e^-6	0.819	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	6.599e^-6	0.819	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
X	9474538	X_9474538_SNP [dm3] X_9580505_SNP [dm6]	T	C	7.794e^-6	0.819	UPSTREAM CG32699 DOWNSTREAM CR45540 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	8476544	X_8476544_SNP [dm3] X_8582511_SNP [dm6]	T	G	7.806e^-6	0.819	INTRON CG12065
3L	5058645	3L_5058645_DEL [dm3] 3L_5058645_DEL [dm6]	TTTTATGGCTACTTT...	T	8.092e^-6	0.819	INTRON Con
3R	9326310	3R_9326310_SNP [dm3] 3R_13500588_SNP [dm6]	G	A	8.916e^-6	0.819	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14960689	3R_14960689_SNP [dm3] 3R_19134967_SNP [dm6]	G	A	1.078e^-5	0.819	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3R	18295966	3R_18295966_SNP [dm3] 3R_22470244_SNP [dm6]	G	A	1.109e^-5	0.819	UTR_5_PRIME Nrx-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	1.110e^-5	0.819	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	16866391	3R_16866391_SNP [dm3] 3R_21040669_SNP [dm6]	G	T	1.243e^-5	0.819	INTRON Dhc93AB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16873236	3L_16873236_SNP [dm3] 3L_16880136_SNP [dm6]	T	C	1.280e^-5	0.819	DOWNSTREAM CG32170 INTRON Lmpt
X	5671591	X_5671591_SNP [dm3] X_5777558_SNP [dm6]	A	G	1.370e^-5	0.819	SYNONYMOUS_CODING CG3108 UPSTREAM CG42264 INTRON CG42699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6509693	2R_6509693_SNP [dm3] 2R_10622188_SNP [dm6]	G	T	1.463e^-5	0.819	UPSTREAM CG11883 INTRON CG11883
3L	3972497	3L_3972497_SNP [dm3] 3L_3972497_SNP [dm6]	T	A	1.472e^-5	0.819	UPSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs
2L	8510361	2L_8510361_SNP [dm3] 2L_8510361_SNP [dm6]	C	A	1.512e^-5	0.819	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2594268	2R_2594268_INS [dm3] 2R_6706763_INS [dm6]	A	AGTATTA	1.512e^-5	0.819	UPSTREAM CR43611 DOWNSTREAM mir-4975 INTRON CG3409 & 1 other
3R	8239628	3R_8239628_SNP [dm3] 3R_12413906_SNP [dm6]	A	C	1.522e^-5	0.819	UTR_5_PRIME pps UPSTREAM snmRNA:649 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk
3R	9325681	3R_9325681_SNP [dm3] 3R_13499959_SNP [dm6]	T	A	1.605e^-5	0.819	INTERGENIC
3R	16895648	3R_16895648_SNP [dm3] 3R_21069926_SNP [dm6]	C	A	1.671e^-5	0.819	DOWNSTREAM r-l & 1 other INTRON AnxB9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2L	18333127	2L_18333127_SNP [dm3] 2L_18333127_SNP [dm6]	A	C	1.686e^-5	0.819	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8224915	3R_8224915_SNP [dm3] 3R_12399193_SNP [dm6]	A	T	1.845e^-5	0.819	SYNONYMOUS_CODING lig3 UPSTREAM Cyp9f3Psi INTRON CG34402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2676031	2L_2676031_SNP [dm3] 2L_2676031_SNP [dm6]	C	T	1.862e^-5	0.819	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2676070	2L_2676070_SNP [dm3] 2L_2676070_SNP [dm6]	T	A	1.862e^-5	0.819	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14647605	3R_14647605_SNP [dm3] 3R_18821883_SNP [dm6]	G	C	1.996e^-5	0.819	INTRON CG18208
2R	6140002	2R_6140002_SNP [dm3] 2R_10252497_SNP [dm6]	C	T	2.068e^-5	0.819	UPSTREAM Syb INTRON CG12913	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3R	16443609	3R_16443609_SNP [dm3] 3R_20617887_SNP [dm6]	A	C	2.070e^-5	0.819	START_GAINED CG5466 UTR_5_PRIME CG5466 UPSTREAM CG15923
3R	7393892	3R_7393892_SNP [dm3] 3R_11568170_SNP [dm6]	C	A	2.096e^-5	0.819	INTERGENIC
X	12518599	X_12518599_DEL [dm3] X_12624566_DEL [dm6]	TG	T	2.141e^-5	0.819	INTRON CG15728
3R	4362872	3R_4362872_SNP [dm3] 3R_8537150_SNP [dm6]	A	C	2.167e^-5	0.819	INTERGENIC
3R	16443960	3R_16443960_SNP [dm3] 3R_20618238_SNP [dm6]	T	C	2.183e^-5	0.819	SYNONYMOUS_CODING CG5466	TF binding site mE1_TFBS_chinmo
3L	839282	3L_839282_SNP [dm3] 3L_839282_SNP [dm6]	A	G	2.190e^-5	0.819	SYNONYMOUS_CODING CG13887 UTR_3_PRIME CG13887 DOWNSTREAM CG13902	TF binding site mE1_TFBS_inv
3L	5530809	3L_5530809_SNP [dm3] 3L_5537709_SNP [dm6]	C	T	2.205e^-5	0.819	DOWNSTREAM CG10625 INTERGENIC
3R	13653685	3R_13653685_SNP [dm3] 3R_17827963_SNP [dm6]	A	T	2.224e^-5	0.819	INTRON tinc	TF binding site mE1_TFBS_cad
3R	8222229	3R_8222229_SNP [dm3] 3R_12396507_SNP [dm6]	C	G	2.231e^-5	0.819	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3R	14960640	3R_14960640_SNP [dm3] 3R_19134918_SNP [dm6]	T	A	2.304e^-5	0.819	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3R	16452801	3R_16452801_SNP [dm3] 3R_20627079_SNP [dm6]	C	G	2.341e^-5	0.819	UTR_3_PRIME H
X	3984786	X_3984786_SNP [dm3] X_4090753_SNP [dm6]	G	C	2.424e^-5	0.819	UTR_3_PRIME CG43689 DOWNSTREAM CG43689	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2860140	2L_2860140_SNP [dm3] 2L_2860140_SNP [dm6]	T	C	2.476e^-5	0.819	INTRON CG2991	TF binding site mE1_TFBS_inv
3R	13655815	3R_13655815_SNP [dm3] 3R_17830093_SNP [dm6]	G	C	2.566e^-5	0.819	INTRON tinc
X	6636640	X_6636640_SNP [dm3] X_6742607_SNP [dm6]	A	C	2.585e^-5	0.819	UPSTREAM snoRNA:Psi28S-3436b DOWNSTREAM snoRNA:Psi28S-3436a & 1 other INTRON RpL17	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11665139	3R_11665139_SNP [dm3] 3R_15839417_SNP [dm6]	A	G	2.586e^-5	0.819	UTR_5_PRIME Pbp45 INTRON spn-E	TF binding site mE1_TFBS_cad
3L	5059537	3L_5059537_DEL [dm3] 3L_5059537_DEL [dm6]	GGG	G	2.601e^-5	0.819	INTRON Con
3L	5059263	3L_5059263_SNP [dm3] 3L_5059263_SNP [dm6]	G	A	2.668e^-5	0.819	INTRON Con
3R	13656310	3R_13656310_SNP [dm3] 3R_17830588_SNP [dm6]	C	T	2.668e^-5	0.819	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4369107	3R_4369107_SNP [dm3] 3R_8543385_SNP [dm6]	T	G	2.715e^-5	0.819	INTERGENIC
2R	17332903	2R_17332903_SNP [dm3] 2R_21445398_SNP [dm6]	A	C	2.756e^-5	0.819	INTRON Sdc
3R	18743119	3R_18743119_SNP [dm3] 3R_22917397_SNP [dm6]	C	A	2.867e^-5	0.819	INTRON klg
3L	19471898	3L_19471898_SNP [dm3] 3L_19478798_SNP [dm6]	G	A	2.875e^-5	0.819	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
3R	8233837	3R_8233837_INS [dm3] 3R_12408115_INS [dm6]	T	TGT	2.884e^-5	0.819	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	20606155	3R_20606155_SNP [dm3] 3R_24780433_SNP [dm6]	T	G	2.972e^-5	0.819	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	3.003e^-5	0.819	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	18323116	3R_18323116_DEL [dm3] 3R_22497394_DEL [dm6]	TT	T	3.051e^-5	0.819	INTRON Octbeta1R
3R	1898927	3R_1898927_SNP [dm3] 3R_6073205_SNP [dm6]	T	G	3.066e^-5	0.819	INTERGENIC
3R	12147209	3R_12147209_INS [dm3] 3R_16321487_INS [dm6]	T	TT	3.069e^-5	0.819	UPSTREAM tRNA:V4:89BC & 1 other DOWNSTREAM tRNA:F2:89BC INTRON Sulf1
2L	3395959	2L_3395959_SNP [dm3] 2L_3395959_SNP [dm6]	G	A	3.122e^-5	0.819	INTERGENIC
3R	13656425	3R_13656425_SNP [dm3] 3R_17830703_SNP [dm6]	G	A	3.192e^-5	0.819	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10962771	3L_10962771_SNP [dm3] 3L_10969671_SNP [dm6]	T	C	3.220e^-5	0.819	INTERGENIC
3R	14837686	3R_14837686_SNP [dm3] 3R_19011964_SNP [dm6]	G	T	3.391e^-5	0.819	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	6985590	2R_6985590_SNP [dm3] 2R_11098085_SNP [dm6]	A	T	3.551e^-5	0.819	INTRON luna
3R	13655792	3R_13655792_SNP [dm3] 3R_17830070_SNP [dm6]	C	G	3.621e^-5	0.819	INTRON tinc
2L	7364586	2L_7364586_SNP [dm3] 2L_7364586_SNP [dm6]	G	A	3.629e^-5	0.819	UTR_5_PRIME Wnt10
3L	5059544	3L_5059544_SNP [dm3] 3L_5059544_SNP [dm6]	A	G	3.711e^-5	0.819	INTRON Con
3L	4736076	3L_4736076_SNP [dm3] 3L_4736076_SNP [dm6]	A	G	3.724e^-5	0.819	INTRON RhoGEF64C
3R	14837660	3R_14837660_SNP [dm3] 3R_19011938_SNP [dm6]	T	A	3.783e^-5	0.819	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	7252303	X_7252303_SNP [dm3] X_7358270_SNP [dm6]	C	A	3.795e^-5	0.819	UPSTREAM CG1999 INTRON CR44357 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8243520	3R_8243520_SNP [dm3] 3R_12417798_SNP [dm6]	C	T	3.833e^-5	0.819	SYNONYMOUS_CODING pps
2L	8510192	2L_8510192_DEL [dm3] 2L_8510192_DEL [dm6]	AGGCAGTGGTATTGCAAATT...	A	3.842e^-5	0.819	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9620810	3R_9620810_SNP [dm3] 3R_13795088_SNP [dm6]	G	C	3.868e^-5	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3444418	3L_3444418_SNP [dm3] 3L_3444418_SNP [dm6]	G	A	4.066e^-5	0.819	INTRON eIF5B	TF binding site BDTNP1_TFBS_da
2L	10104398	2L_10104398_SNP [dm3] 2L_10104398_SNP [dm6]	C	T	4.073e^-5	0.819	INTRON CG44153 & 1 other
3L	6490417	3L_6490417_SNP [dm3] 3L_6497317_SNP [dm6]	T	C	4.283e^-5	0.819	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
2L	8510267	2L_8510267_SNP [dm3] 2L_8510267_SNP [dm6]	C	T	4.376e^-5	0.819	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13237450	2L_13237450_SNP [dm3] 2L_13237450_SNP [dm6]	G	A	4.416e^-5	0.819	INTRON CG5867
3L	12984681	3L_12984681_SNP [dm3] 3L_12991581_SNP [dm6]	G	T	4.451e^-5	0.819	INTERGENIC
3L	5059547	3L_5059547_SNP [dm3] 3L_5059547_SNP [dm6]	A	G	4.533e^-5	0.819	INTRON Con
3L	18603532	3L_18603532_SNP [dm3] 3L_18610432_SNP [dm6]	G	T	4.606e^-5	0.819	DOWNSTREAM CG18231 INTRON CG4174 & 2 others
3R	8168439	3R_8168439_SNP [dm3] 3R_12342717_SNP [dm6]	A	T	4.616e^-5	0.819	DOWNSTREAM CG44956 INTERGENIC
3L	5059551	3L_5059551_SNP [dm3] 3L_5059551_SNP [dm6]	G	C	4.629e^-5	0.819	INTRON Con
2L	22306995	2L_22306995_SNP [dm3] 2L_22306995_SNP [dm6]	T	A	4.659e^-5	0.819	INTERGENIC
3R	10902071	3R_10902071_SNP [dm3] 3R_15076349_SNP [dm6]	A	T	4.739e^-5	0.819	INTRON dpr9
3L	5059454	3L_5059454_SNP [dm3] 3L_5059454_SNP [dm6]	A	G	4.770e^-5	0.819	INTRON Con
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	4.872e^-5	0.819	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3L	6012222	3L_6012222_SNP [dm3] 3L_6019122_SNP [dm6]	T	G	4.913e^-5	0.819	START_GAINED PVRAP UTR_5_PRIME PVRAP
3L	5059545	3L_5059545_SNP [dm3] 3L_5059545_SNP [dm6]	G	A	4.926e^-5	0.819	INTRON Con
2L	13107278	2L_13107278_SNP [dm3] 2L_13107278_SNP [dm6]	T	C	4.936e^-5	0.819	SPLICE_SITE_REGION CG5142 INTRON CG5142	TF binding site mE1_TFBS_chinmo
3R	22373595	3R_22373595_SNP [dm3] 3R_26547873_SNP [dm6]	A	C	4.945e^-5	0.819	INTRON scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9552840	3R_9552840_SNP [dm3] 3R_13727118_SNP [dm6]	T	C	5.055e^-5	0.819	INTRON CG34383
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	5.059e^-5	0.819	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8510271	2L_8510271_SNP [dm3] 2L_8510271_SNP [dm6]	A	G	5.183e^-5	0.819	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10794161	X_10794161_SNP [dm3] X_10900128_SNP [dm6]	A	C	5.255e^-5	0.819	SPLICE_SITE_ACCEPTOR CG15208 UPSTREAM CG1582 & 1 other INTRON CG15208	TF binding site BDTNP1_TFBS_dl
X	4071289	X_4071289_INS [dm3] X_4177256_INS [dm6]	T	TGAAACTGAT	5.335e^-5	0.819	INTRON Fas2	TF binding site mE1_TFBS_HSA
2L	2676086	2L_2676086_SNP [dm3] 2L_2676086_SNP [dm6]	T	C	5.356e^-5	0.819	INTERGENIC	TF binding site mE1_TFBS_cad
3R	13656363	3R_13656363_SNP [dm3] 3R_17830641_SNP [dm6]	T	C	5.383e^-5	0.819	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5950285	3L_5950285_SNP [dm3] 3L_5957185_SNP [dm6]	T	C	5.385e^-5	0.819	INTERGENIC
X	4120367	X_4120367_SNP [dm3] X_4226334_SNP [dm6]	C	T	5.434e^-5	0.819	INTERGENIC
X	20538434	X_20538434_SNP [dm3] X_20667407_SNP [dm6]	G	C	5.453e^-5	0.819	UPSTREAM CG1835 INTRON CG1835
3R	1898130	3R_1898130_SNP [dm3] 3R_6072408_SNP [dm6]	A	T	5.484e^-5	0.819	INTERGENIC
2R	10098532	2R_10098532_DEL [dm3] 2R_14211027_DEL [dm6]	TTTGTATCT	T	5.486e^-5	0.819	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24598352	3R_24598352_DEL [dm3] 3R_28772630_DEL [dm6]	AA	A	5.507e^-5	0.819	INTERGENIC
3L	3921900	3L_3921900_SNP [dm3] 3L_3921900_SNP [dm6]	G	T	5.508e^-5	0.819	INTRON Eip63F-1
3L	2772387	3L_2772387_SNP [dm3] 3L_2772387_SNP [dm6]	A	T	5.532e^-5	0.819	UPSTREAM CG9977 DOWNSTREAM CG12093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	5059201	3L_5059201_SNP [dm3] 3L_5059201_SNP [dm6]	A	T	5.635e^-5	0.819	INTRON Con
3R	17000446	3R_17000446_SNP [dm3] 3R_21174724_SNP [dm6]	T	C	5.637e^-5	0.819	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5099694	X_5099694_SNP [dm3] X_5205661_SNP [dm6]	T	C	5.640e^-5	0.819	INTRON CG15465 & 1 other
3R	8235993	3R_8235993_SNP [dm3] 3R_12410271_SNP [dm6]	T	G	5.654e^-5	0.819	SPLICE_SITE_REGION CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	5.658e^-5	0.819	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	16777732	3L_16777732_SNP [dm3] 3L_16784632_SNP [dm6]	T	C	5.888e^-5	0.819	SYNONYMOUS_CODING CG9706 DOWNSTREAM Int6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6538816	X_6538816_SNP [dm3] X_6644783_SNP [dm6]	T	C	5.922e^-5	0.819	INTRON pigs
3L	12452937	3L_12452937_DEL [dm3] 3L_12459837_DEL [dm6]	CC	C	5.926e^-5	0.819	INTERGENIC
3L	12910059	3L_12910059_SNP [dm3] 3L_12916959_SNP [dm6]	A	T	5.940e^-5	0.819	INTERGENIC
3R	14837790	3R_14837790_SNP [dm3] 3R_19012068_SNP [dm6]	T	A	6.010e^-5	0.819	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
3R	15480100	3R_15480100_SNP [dm3] 3R_19654378_SNP [dm6]	G	A	6.114e^-5	0.819	SYNONYMOUS_CODING CG6184	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6636575	X_6636575_SNP [dm3] X_6742542_SNP [dm6]	G	T	6.126e^-5	0.819	UPSTREAM snoRNA:Psi28S-3436b DOWNSTREAM snoRNA:Psi28S-3436a & 1 other INTRON RpL17	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	5581329	X_5581329_SNP [dm3] X_5687296_SNP [dm6]	C	A	6.130e^-5	0.819	NON_SYNONYMOUS_CODING CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	15487323	2L_15487323_SNP [dm3] 2L_15487323_SNP [dm6]	A	C	6.215e^-5	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13249133	2L_13249133_SNP [dm3] 2L_13249133_SNP [dm6]	T	C	6.281e^-5	0.819	NON_SYNONYMOUS_CODING CG16820
3L	10633376	3L_10633376_SNP [dm3] 3L_10640276_SNP [dm6]	A	C	6.309e^-5	0.819	DOWNSTREAM CG32066 & 2 others INTERGENIC
3L	12453642	3L_12453642_SNP [dm3] 3L_12460542_SNP [dm6]	A	G	6.326e^-5	0.819	INTERGENIC
X	9474233	X_9474233_SNP [dm3] X_9580200_SNP [dm6]	T	A	6.404e^-5	0.819	UPSTREAM CG32699 INTERGENIC	TF binding site mE1_TFBS_cad
3R	14960436	3R_14960436_SNP [dm3] 3R_19134714_SNP [dm6]	G	C	6.493e^-5	0.819	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3R	16909419	3R_16909419_SNP [dm3] 3R_21083697_SNP [dm6]	G	A	6.524e^-5	0.819	UTR_3_PRIME RhoGAP93B
3R	16443547	3R_16443547_SNP [dm3] 3R_20617825_SNP [dm6]	T	G	6.556e^-5	0.819	UPSTREAM CG5466 & 1 other INTERGENIC
3R	21990038	3R_21990038_SNP [dm3] 3R_26164316_SNP [dm6]	T	C	6.574e^-5	0.819	INTERGENIC
X	11852673	X_11852673_SNP [dm3] X_11958640_SNP [dm6]	G	T	6.578e^-5	0.819	INTRON cac
X	6538853	X_6538853_SNP [dm3] X_6644820_SNP [dm6]	G	A	6.642e^-5	0.819	SPLICE_SITE_REGION pigs INTRON pigs
3R	9416799	3R_9416799_SNP [dm3] 3R_13591077_SNP [dm6]	A	T	6.692e^-5	0.819	DOWNSTREAM CG14369 INTERGENIC
X	10794229	X_10794229_SNP [dm3] X_10900196_SNP [dm6]	C	T	6.702e^-5	0.819	UTR_5_PRIME CG15208 UPSTREAM CG1582 & 1 other
X	6195576	X_6195576_SNP [dm3] X_6301543_SNP [dm6]	G	A	6.708e^-5	0.819	UPSTREAM CG12219 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3R	9416806	3R_9416806_SNP [dm3] 3R_13591084_SNP [dm6]	T	A	6.720e^-5	0.819	DOWNSTREAM CG14369 INTERGENIC
3L	13290743	3L_13290743_SNP [dm3] 3L_13297643_SNP [dm6]	A	T	6.726e^-5	0.819	UPSTREAM Sfp70A4 & 1 other DOWNSTREAM CR45255 & 1 other INTERGENIC
2L	9753167	2L_9753167_SNP [dm3] 2L_9753167_SNP [dm6]	G	A	6.759e^-5	0.819	INTERGENIC
2L	12113169	2L_12113169_DEL [dm3] 2L_12113169_DEL [dm6]	TAA	T	6.796e^-5	0.819	DOWNSTREAM Phae2 INTERGENIC
X	14012389	X_14012389_SNP [dm3] X_14118356_SNP [dm6]	T	A	6.830e^-5	0.819	UPSTREAM tRNA:S7:12Eg INTERGENIC	TF binding site mE1_TFBS_HSA
X	6195047	X_6195047_SNP [dm3] X_6301014_SNP [dm6]	T	G	6.904e^-5	0.819	INTRON CG12219	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	9542639	3R_9542639_SNP [dm3] 3R_13716917_SNP [dm6]	C	G	6.948e^-5	0.819	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	13655973	3R_13655973_SNP [dm3] 3R_17830251_SNP [dm6]	C	T	7.084e^-5	0.819	INTRON tinc
3R	23976078	3R_23976078_SNP [dm3] 3R_28150356_SNP [dm6]	T	A	7.153e^-5	0.819	INTRON CG34354
3R	10557400	3R_10557400_SNP [dm3] 3R_14731678_SNP [dm6]	A	T	7.237e^-5	0.819	UPSTREAM CG7530 DOWNSTREAM eff INTERGENIC	TF binding site mE1_TFBS_Trl
3R	10214058	3R_10214058_SNP [dm3] 3R_14388336_SNP [dm6]	A	C	7.243e^-5	0.819	INTERGENIC
3L	16230092	3L_16230092_SNP [dm3] 3L_16236992_SNP [dm6]	T	A	7.350e^-5	0.819	UTR_3_PRIME l_3_72Dp UPSTREAM l_3_72Dr
X	9474701	X_9474701_INS [dm3] X_9580668_INS [dm6]	T	TCTTAAGTTT	7.350e^-5	0.819	UPSTREAM CG32699 DOWNSTREAM CR45540 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8515362	2L_8515362_SNP [dm3] 2L_8515362_SNP [dm6]	T	G	7.357e^-5	0.819	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12910054	3L_12910054_SNP [dm3] 3L_12916954_SNP [dm6]	G	A	7.375e^-5	0.819	INTERGENIC
2R	2739613	2R_2739613_DEL [dm3] 2R_6852108_DEL [dm6]	GG	G	7.405e^-5	0.819	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16309064	3R_16309064_SNP [dm3] 3R_20483342_SNP [dm6]	A	G	7.484e^-5	0.819	INTRON Gfrl
2R	9532227	2R_9532227_SNP [dm3] 2R_13644722_SNP [dm6]	T	G	7.552e^-5	0.819	INTRON fas
3L	6750666	3L_6750666_SNP [dm3] 3L_6757566_SNP [dm6]	C	T	7.620e^-5	0.819	SYNONYMOUS_CODING CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6750678	3L_6750678_SNP [dm3] 3L_6757578_SNP [dm6]	T	C	7.620e^-5	0.819	SYNONYMOUS_CODING CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7393746	3R_7393746_SNP [dm3] 3R_11568024_SNP [dm6]	A	G	7.637e^-5	0.819	UPSTREAM fabp & 1 other INTERGENIC
3R	13656532	3R_13656532_SNP [dm3] 3R_17830810_SNP [dm6]	C	G	7.646e^-5	0.819	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8507797	2L_8507797_MNP [dm3] 2L_8507797_MNP [dm6]	AAT	TCC	7.705e^-5	0.819	UPSTREAM Dh31 INTERGENIC
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	7.755e^-5	0.819	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
X	10794140	X_10794140_SNP [dm3] X_10900107_SNP [dm6]	C	A	7.783e^-5	0.819	UPSTREAM CG1582 & 1 other INTRON CG15208	TF binding site BDTNP1_TFBS_dl
X	9474680	X_9474680_SNP [dm3] X_9580647_SNP [dm6]	T	C	7.793e^-5	0.819	UPSTREAM CG32699 DOWNSTREAM CR45540 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	7961229	X_7961229_SNP [dm3] X_8067196_SNP [dm6]	G	A	7.855e^-5	0.819	SYNONYMOUS_CODING mys
3L	4913241	3L_4913241_DEL [dm3] 3L_4913241_DEL [dm6]	TGCTTGTCAACAT...	T	7.865e^-5	0.819	INTRON Rh50
3R	13667483	3R_13667483_SNP [dm3] 3R_17841761_SNP [dm6]	G	A	7.891e^-5	0.819	INTRON tinc
3R	19214550	3R_19214550_SNP [dm3] 3R_23388828_SNP [dm6]	A	G	7.953e^-5	0.819	NON_SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14965997	2R_14965997_SNP [dm3] 2R_19078492_SNP [dm6]	T	C	7.960e^-5	0.819	INTRON 5-HT1A
3L	1552631	3L_1552631_SNP [dm3] 3L_1552631_SNP [dm6]	A	C	8.037e^-5	0.819	UTR_3_PRIME Cct1 UPSTREAM Cct2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	126347	2L_126347_SNP [dm3] 2L_126347_SNP [dm6]	T	C	8.039e^-5	0.819	INTRON CG11455 & 1 other
3R	18246634	3R_18246634_SNP [dm3] 3R_22420912_SNP [dm6]	G	A	8.054e^-5	0.819	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8159115	3R_8159115_SNP [dm3] 3R_12333393_SNP [dm6]	G	C	8.073e^-5	0.819	INTERGENIC
3L	2995276	3L_2995276_SNP [dm3] 3L_2995276_SNP [dm6]	G	A	8.120e^-5	0.819	INTRON CG2113
2R	6083530	2R_6083530_INS [dm3] 2R_10196025_INS [dm6]	G	GTGG	8.225e^-5	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	6195847	X_6195847_SNP [dm3] X_6301814_SNP [dm6]	C	T	8.227e^-5	0.819	UPSTREAM CG12219 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3R	13653556	3R_13653556_SNP [dm3] 3R_17827834_SNP [dm6]	C	T	8.239e^-5	0.819	INTRON tinc	TF binding site mE1_TFBS_cad
3L	10697089	3L_10697089_INS [dm3] 3L_10703989_INS [dm6]	A	AGAAAGA	8.264e^-5	0.819	INTERGENIC
X	12318135	X_12318135_SNP [dm3] X_12424102_SNP [dm6]	A	G	8.270e^-5	0.819	INTERGENIC
3R	17682853	3R_17682853_SNP [dm3] 3R_21857131_SNP [dm6]	A	G	8.350e^-5	0.819	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	12023626	3L_12023626_SNP [dm3] 3L_12030526_SNP [dm6]	T	C	8.350e^-5	0.819	INTRON rols	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13873045	X_13873045_SNP [dm3] X_13979012_SNP [dm6]	T	C	8.360e^-5	0.819	INTRON mamo
X	11837704	X_11837704_SNP [dm3] X_11943671_SNP [dm6]	T	A	8.385e^-5	0.819	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4836069	2R_4836069_SNP [dm3] 2R_8948564_SNP [dm6]	A	T	8.396e^-5	0.819	UTR_3_PRIME CG33199 & 1 other DOWNSTREAM CG8229
3L	5758649	3L_5758649_SNP [dm3] 3L_5765549_SNP [dm6]	T	G	8.413e^-5	0.819	UTR_5_PRIME CG10576 UPSTREAM Txl & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	5059385	3L_5059385_SNP [dm3] 3L_5059385_SNP [dm6]	G	A	8.419e^-5	0.819	INTRON Con
2L	3198245	2L_3198245_SNP [dm3] 2L_3198245_SNP [dm6]	T	G	8.439e^-5	0.819	INTRON CG34393
X	5212325	X_5212325_SNP [dm3] X_5318292_SNP [dm6]	A	G	8.457e^-5	0.819	SYNONYMOUS_CODING Sas10 UPSTREAM CG15930 DOWNSTREAM Rnp4F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	6747660	3L_6747660_SNP [dm3] 3L_6754560_SNP [dm6]	C	A	8.500e^-5	0.819	DOWNSTREAM CG10103 & 1 other INTRON CG10103	TF binding site mE1_TFBS_cad
2L	18815170	2L_18815170_SNP [dm3] 2L_18815170_SNP [dm6]	C	G	8.545e^-5	0.819	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5051393	3L_5051393_SNP [dm3] 3L_5051393_SNP [dm6]	C	G	8.581e^-5	0.819	INTRON Con EXON CR43884
3L	6747645	3L_6747645_SNP [dm3] 3L_6754545_SNP [dm6]	A	G	8.753e^-5	0.819	DOWNSTREAM CG10103 & 1 other INTRON CG10103	TF binding site mE1_TFBS_cad
3L	6747783	3L_6747783_SNP [dm3] 3L_6754683_SNP [dm6]	T	C	8.753e^-5	0.819	DOWNSTREAM CG10103 & 1 other INTRON CG10103	TF binding site mE1_TFBS_cad
3L	6747848	3L_6747848_SNP [dm3] 3L_6754748_SNP [dm6]	G	C	8.753e^-5	0.819	SYNONYMOUS_CODING CG10103 DOWNSTREAM CG10103 & 1 other INTRON CG10103	TF binding site mE1_TFBS_cad
2L	2587999	2L_2587999_INS [dm3] 2L_2587999_INS [dm6]	G	GTTG	8.766e^-5	0.819	INTERGENIC
X	9474311	X_9474311_DEL [dm3] X_9580278_DEL [dm6]	CGTTC	C	8.766e^-5	0.819	UPSTREAM CG32699 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	17747302	3R_17747302_SNP [dm3] 3R_21921580_SNP [dm6]	T	C	8.805e^-5	0.819	INTERGENIC
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	8.855e^-5	0.819	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
3R	14960664	3R_14960664_SNP [dm3] 3R_19134942_SNP [dm6]	C	T	8.858e^-5	0.819	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3R	18322647	3R_18322647_SNP [dm3] 3R_22496925_SNP [dm6]	A	G	8.898e^-5	0.819	UPSTREAM Octbeta1R INTERGENIC	TF binding site mE1_TFBS_inv
3L	6064536	3L_6064536_SNP [dm3] 3L_6071436_SNP [dm6]	T	G	9.050e^-5	0.819	UTR_3_PRIME CG42269 UPSTREAM CG6602	TF binding site mE1_TFBS_bab1
2R	18259337	2R_18259337_SNP [dm3] 2R_22371832_SNP [dm6]	C	T	9.070e^-5	0.819	INTRON Liprin-gamma
3R	7391898	3R_7391898_INS [dm3] 3R_11566176_INS [dm6]	T	TT	9.141e^-5	0.819	INTRON fabp & 1 other	TF binding site mE1_TFBS_Trl
3R	25531337	3R_25531337_SNP [dm3] 3R_29705615_SNP [dm6]	A	G	9.234e^-5	0.819	INTERGENIC
2R	15750103	2R_15750103_SNP [dm3] 2R_19862598_SNP [dm6]	C	T	9.383e^-5	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	12773505	3R_12773505_SNP [dm3] 3R_16947783_SNP [dm6]	C	G	9.405e^-5	0.819	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	5099672	X_5099672_SNP [dm3] X_5205639_SNP [dm6]	T	G	9.408e^-5	0.819	INTRON CG15465 & 1 other
2L	8507814	2L_8507814_SNP [dm3] 2L_8507814_SNP [dm6]	G	A	9.498e^-5	0.819	UPSTREAM Dh31 INTERGENIC
3R	4378534	3R_4378534_SNP [dm3] 3R_8552812_SNP [dm6]	A	G	9.508e^-5	0.819	NON_SYNONYMOUS_CODING Or85d
3R	24762296	3R_24762296_SNP [dm3] 3R_28936574_SNP [dm6]	C	T	9.509e^-5	0.819	INTRON CG14521
3R	14837477	3R_14837477_SNP [dm3] 3R_19011755_SNP [dm6]	G	A	9.599e^-5	0.819	SYNONYMOUS_CODING gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	9569608	X_9569608_SNP [dm3] X_9675575_SNP [dm6]	T	A	9.719e^-5	0.819	INTRON nej	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	19108331	3R_19108331_SNP [dm3] 3R_23282609_SNP [dm6]	C	T	9.762e^-5	0.819	SYNONYMOUS_CODING Cdc16	TF binding site mE1_TFBS_sens
3R	14960570	3R_14960570_SNP [dm3] 3R_19134848_SNP [dm6]	T	G	9.809e^-5	0.819	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2R	11937032	2R_11937032_SNP [dm3] 2R_16049527_SNP [dm6]	T	C	9.893e^-5	0.819	SYNONYMOUS_CODING CG8405
3L	10962517	3L_10962517_SNP [dm3] 3L_10969417_SNP [dm6]	A	C	1.003e^-4	0.819	INTERGENIC
2R	16969326	2R_16969326_SNP [dm3] 2R_21081821_SNP [dm6]	G	C	1.008e^-4	0.819	INTRON Treh
3L	1444499	3L_1444499_SNP [dm3] 3L_1444499_SNP [dm6]	T	G	1.023e^-4	0.819	INTRON Ptp61F
3R	6364165	3R_6364165_SNP [dm3] 3R_10538443_SNP [dm6]	G	T	1.027e^-4	0.819	INTRON hth
2L	6504242	2L_6504242_SNP [dm3] 2L_6504242_SNP [dm6]	T	C	1.033e^-4	0.819	INTRON CG31637
2L	15547852	2L_15547852_SNP [dm3] 2L_15547852_SNP [dm6]	T	C	1.034e^-4	0.819	NON_SYNONYMOUS_CODING Skadu
X	21302260	X_21302260_SNP [dm3] X_21431233_SNP [dm6]	C	T	1.034e^-4	0.819	INTRON CG42343
2L	2488770	2L_2488770_SNP [dm3] 2L_2488770_SNP [dm6]	G	A	1.034e^-4	0.819	UTR_3_PRIME Slh	enhancer FlyBase
3R	24725080	3R_24725080_SNP [dm3] 3R_28899358_SNP [dm6]	C	G	1.043e^-4	0.819	INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14960927	3R_14960927_SNP [dm3] 3R_19135205_SNP [dm6]	A	G	1.051e^-4	0.819	UTR_5_PRIME Cyp12a4 DOWNSTREAM Cyp12a5
3R	17045544	3R_17045544_SNP [dm3] 3R_21219822_SNP [dm6]	A	C	1.052e^-4	0.819	SYNONYMOUS_CODING Oga	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8515377	2L_8515377_SNP [dm3] 2L_8515377_SNP [dm6]	T	C	1.055e^-4	0.819	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17011641	3R_17011641_SNP [dm3] 3R_21185919_SNP [dm6]	T	A	1.056e^-4	0.819	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	14960371	3R_14960371_SNP [dm3] 3R_19134649_SNP [dm6]	C	A	1.060e^-4	0.819	UTR_3_PRIME Cyp12a5 UPSTREAM Cyp12a4
2L	7182943	2L_7182943_SNP [dm3] 2L_7182943_SNP [dm6]	A	T	1.061e^-4	0.819	INTRON CG4495	TF binding site BDTNP1_TFBS_twi
3R	15636904	3R_15636904_SNP [dm3] 3R_19811182_SNP [dm6]	G	A	1.064e^-4	0.819	INTRON bnl
X	9474228	X_9474228_SNP [dm3] X_9580195_SNP [dm6]	A	C	1.064e^-4	0.819	UPSTREAM CG32699 INTERGENIC	TF binding site mE1_TFBS_cad
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	1.073e^-4	0.819	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5953429	3L_5953429_SNP [dm3] 3L_5960329_SNP [dm6]	T	G	1.076e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26999957	3R_26999957_DEL [dm3] 3R_31174235_DEL [dm6]	CTCTGGCG	C	1.077e^-4	0.819	INTRON Gycbeta100B
3R	13187998	3R_13187998_SNP [dm3] 3R_17362276_SNP [dm6]	A	C	1.081e^-4	0.819	INTRON beat-IIa
3L	15505500	3L_15505500_SNP [dm3] 3L_15512400_SNP [dm6]	A	G	1.082e^-4	0.819	UTR_3_PRIME Eip71CD INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9834710	3L_9834710_SNP [dm3] 3L_9841610_SNP [dm6]	A	T	1.086e^-4	0.819	INTRON RasGAP1	TF binding site mE1_TFBS_cad
3L	5059524	3L_5059524_SNP [dm3] 3L_5059524_SNP [dm6]	T	A	1.087e^-4	0.819	INTRON Con
X	6538854	X_6538854_SNP [dm3] X_6644821_SNP [dm6]	C	T	1.094e^-4	0.819	SPLICE_SITE_REGION pigs INTRON pigs
3R	14084953	3R_14084953_SNP [dm3] 3R_18259231_SNP [dm6]	A	C	1.096e^-4	0.819	INTERGENIC	transposable element FlyBase
3R	13667832	3R_13667832_SNP [dm3] 3R_17842110_SNP [dm6]	T	C	1.100e^-4	0.819	INTRON tinc
3L	15487023	3L_15487023_DEL [dm3] 3L_15493923_DEL [dm6]	CAACTTCC	C	1.101e^-4	0.819	INTRON CG12355	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15560008	3R_15560008_SNP [dm3] 3R_19734286_SNP [dm6]	T	A	1.108e^-4	0.819	INTRON GluClalpha
2R	6508172	2R_6508172_SNP [dm3] 2R_10620667_SNP [dm6]	T	C	1.116e^-4	0.819	INTRON CG11883
3R	8253437	3R_8253437_SNP [dm3] 3R_12427715_SNP [dm6]	C	T	1.118e^-4	0.819	NON_SYNONYMOUS_CODING Sas DOWNSTREAM CG5641	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5581907	X_5581907_SNP [dm3] X_5687874_SNP [dm6]	T	A	1.119e^-4	0.819	SPLICE_SITE_REGION CG3160 INTRON CG3160	TF binding site mE1_TFBS_sens
3L	16413303	3L_16413303_SNP [dm3] 3L_16420203_SNP [dm6]	G	A	1.132e^-4	0.819	NON_SYNONYMOUS_CODING CG33158 UPSTREAM Aats-tyr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	7435265	3R_7435265_SNP [dm3] 3R_11609543_SNP [dm6]	C	T	1.136e^-4	0.819	INTRON Jupiter
3R	7391607	3R_7391607_SNP [dm3] 3R_11565885_SNP [dm6]	A	G	1.142e^-4	0.819	INTRON fabp & 1 other
3R	26135145	3R_26135145_SNP [dm3] 3R_30309423_SNP [dm6]	T	C	1.149e^-4	0.819	INTRON hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11862708	3R_11862708_SNP [dm3] 3R_16036986_SNP [dm6]	C	A	1.150e^-4	0.819	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5759701	3L_5759701_SNP [dm3] 3L_5766601_SNP [dm6]	T	C	1.150e^-4	0.819	SYNONYMOUS_CODING Txl UPSTREAM CG10576 DOWNSTREAM Ppat-Dpck	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	10693026	3L_10693026_SNP [dm3] 3L_10699926_SNP [dm6]	C	T	1.153e^-4	0.819	INTERGENIC
2L	8510259	2L_8510259_SNP [dm3] 2L_8510259_SNP [dm6]	A	T	1.155e^-4	0.819	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24599566	3R_24599566_INS [dm3] 3R_28773844_INS [dm6]	T	TT	1.155e^-4	0.819	INTERGENIC
3R	7393794	3R_7393794_SNP [dm3] 3R_11568072_SNP [dm6]	G	T	1.163e^-4	0.819	INTERGENIC
2L	12759204	2L_12759204_SNP [dm3] 2L_12759204_SNP [dm6]	C	T	1.177e^-4	0.819	INTERGENIC
2L	12759177	2L_12759177_SNP [dm3] 2L_12759177_SNP [dm6]	C	T	1.183e^-4	0.819	INTERGENIC
3L	3043621	3L_3043621_SNP [dm3] 3L_3043621_SNP [dm6]	A	G	1.201e^-4	0.819	SYNONYMOUS_CODING Jafrac2 DOWNSTREAM scramb2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21302182	X_21302182_SNP [dm3] X_21431155_SNP [dm6]	C	G	1.202e^-4	0.819	INTRON CG42343
X	3930668	X_3930668_SNP [dm3] X_4036635_SNP [dm6]	C	A	1.210e^-4	0.819	INTERGENIC
3R	22397791	3R_22397791_SNP [dm3] 3R_26572069_SNP [dm6]	T	A	1.214e^-4	0.819	INTRON scrib
X	9085990	X_9085990_SNP [dm3] X_9191957_SNP [dm6]	C	T	1.217e^-4	0.819	SYNONYMOUS_CODING CG12057 UPSTREAM CG12056	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13656550	3R_13656550_SNP [dm3] 3R_17830828_SNP [dm6]	C	T	1.218e^-4	0.819	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6538983	X_6538983_SNP [dm3] X_6644950_SNP [dm6]	A	T	1.224e^-4	0.819	SPLICE_SITE_REGION pigs INTRON pigs
3L	16873249	3L_16873249_SNP [dm3] 3L_16880149_SNP [dm6]	G	T	1.224e^-4	0.819	DOWNSTREAM CG32170 INTRON Lmpt
2L	13247168	2L_13247168_SNP [dm3] 2L_13247168_SNP [dm6]	G	A	1.233e^-4	0.819	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8216558	3R_8216558_SNP [dm3] 3R_12390836_SNP [dm6]	C	T	1.234e^-4	0.819	UTR_3_PRIME CG10096 & 1 other INTRON CG34402
3R	18459947	3R_18459947_SNP [dm3] 3R_22634225_SNP [dm6]	T	G	1.239e^-4	0.819	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	1.246e^-4	0.819	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	1.246e^-4	0.819	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7883552	X_7883552_SNP [dm3] X_7989519_SNP [dm6]	T	C	1.246e^-4	0.819	INTERGENIC
2R	12995097	2R_12995097_SNP [dm3] 2R_17107592_SNP [dm6]	A	G	1.251e^-4	0.819	DOWNSTREAM CG30456 INTERGENIC
3R	17023557	3R_17023557_SNP [dm3] 3R_21197835_SNP [dm6]	A	G	1.251e^-4	0.819	INTRON SNF4Agamma
3L	19236828	3L_19236828_SNP [dm3] 3L_19243728_SNP [dm6]	G	T	1.263e^-4	0.819	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11910657	2L_11910657_SNP [dm3] 2L_11910657_SNP [dm6]	G	A	1.264e^-4	0.819	INTRON Pde1c
3R	13660749	3R_13660749_SNP [dm3] 3R_17835027_SNP [dm6]	A	G	1.269e^-4	0.819	INTRON tinc
2L	15318224	2L_15318224_SNP [dm3] 2L_15318224_SNP [dm6]	C	T	1.269e^-4	0.819	NON_SYNONYMOUS_CODING nht
3L	4009695	3L_4009695_DEL [dm3] 3L_4009695_DEL [dm6]	GTCG	G	1.275e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	12450956	X_12450956_SNP [dm3] X_12556923_SNP [dm6]	T	A	1.278e^-4	0.819	INTRON CG43921
3L	15272480	3L_15272480_SNP [dm3] 3L_15279380_SNP [dm6]	C	T	1.279e^-4	0.819	INTERGENIC
2L	8515386	2L_8515386_SNP [dm3] 2L_8515386_SNP [dm6]	T	C	1.282e^-4	0.819	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7085366	3L_7085366_SNP [dm3] 3L_7092266_SNP [dm6]	G	A	1.288e^-4	0.819	UPSTREAM Cpr65Ec INTERGENIC
X	21302192	X_21302192_SNP [dm3] X_21431165_SNP [dm6]	A	T	1.294e^-4	0.819	INTRON CG42343
X	6538822	X_6538822_SNP [dm3] X_6644789_SNP [dm6]	C	T	1.301e^-4	0.819	INTRON pigs
2L	132590	2L_132590_SNP [dm3] 2L_132590_SNP [dm6]	G	A	1.303e^-4	0.819	SYNONYMOUS_CODING Gs1 INTRON CG11455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22395737	3R_22395737_SNP [dm3] 3R_26570015_SNP [dm6]	T	C	1.308e^-4	0.819	INTRON scrib	TF binding site BDTNP1_TFBS_twi
3R	19210494	3R_19210494_SNP [dm3] 3R_23384772_SNP [dm6]	A	G	1.309e^-4	0.819	UTR_5_PRIME CG4393	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
X	9474262	X_9474262_SNP [dm3] X_9580229_SNP [dm6]	G	A	1.309e^-4	0.819	UPSTREAM CG32699 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8236387	3R_8236387_SNP [dm3] 3R_12410665_SNP [dm6]	G	A	1.313e^-4	0.819	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26569774	3R_26569774_SNP [dm3] 3R_30744052_SNP [dm6]	A	G	1.316e^-4	0.819	UTR_3_PRIME CG15543 DOWNSTREAM Npc2g & 1 other
2L	6504300	2L_6504300_SNP [dm3] 2L_6504300_SNP [dm6]	C	G	1.317e^-4	0.819	INTRON CG31637
3R	15636519	3R_15636519_SNP [dm3] 3R_19810797_SNP [dm6]	C	T	1.320e^-4	0.819	INTRON bnl
3R	16442886	3R_16442886_INS [dm3] 3R_20617164_INS [dm6]	T	TT	1.321e^-4	0.819	UPSTREAM CG5466 & 1 other INTERGENIC
2L	8515266	2L_8515266_SNP [dm3] 2L_8515266_SNP [dm6]	A	G	1.323e^-4	0.819	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	4120205	X_4120205_SNP [dm3] X_4226172_SNP [dm6]	A	T	1.324e^-4	0.819	INTERGENIC
3L	5059629	3L_5059629_SNP [dm3] 3L_5059629_SNP [dm6]	T	A	1.326e^-4	0.819	INTRON Con
2L	14203565	2L_14203565_SNP [dm3] 2L_14203565_SNP [dm6]	A	C	1.333e^-4	0.819	INTRON Dyrk2
3R	6364166	3R_6364166_SNP [dm3] 3R_10538444_SNP [dm6]	A	T	1.334e^-4	0.819	INTRON hth
3L	10725741	3L_10725741_MNP [dm3] 3L_10732641_MNP [dm6]	ATG	CGT	1.335e^-4	0.819	INTERGENIC
3R	4361033	3R_4361033_INS [dm3] 3R_8535311_INS [dm6]	A	TT	1.336e^-4	0.819	INTERGENIC
3L	10725746	3L_10725746_SNP [dm3] 3L_10732646_SNP [dm6]	T	C	1.338e^-4	0.819	INTERGENIC
3R	14840941	3R_14840941_SNP [dm3] 3R_19015219_SNP [dm6]	C	T	1.340e^-4	0.819	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12453372	3L_12453372_DEL [dm3] 3L_12460272_DEL [dm6]	AA	A	1.356e^-4	0.819	INTERGENIC
3R	23493101	3R_23493101_SNP [dm3] 3R_27667379_SNP [dm6]	C	G	1.359e^-4	0.819	SYNONYMOUS_CODING unc80
3L	15190922	3L_15190922_SNP [dm3] 3L_15197822_SNP [dm6]	G	A	1.361e^-4	0.819	INTERGENIC
3L	6490574	3L_6490574_SNP [dm3] 3L_6497474_SNP [dm6]	C	T	1.384e^-4	0.819	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	10386220	3R_10386220_SNP [dm3] 3R_14560498_SNP [dm6]	T	A	1.385e^-4	0.819	UPSTREAM CG14850 & 1 other INTERGENIC
3L	3023021	3L_3023021_SNP [dm3] 3L_3023021_SNP [dm6]	C	T	1.385e^-4	0.819	INTERGENIC
3R	8231349	3R_8231349_SNP [dm3] 3R_12405627_SNP [dm6]	T	C	1.388e^-4	0.819	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4104457	3L_4104457_SNP [dm3] 3L_4104457_SNP [dm6]	G	A	1.400e^-4	0.819	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	22599489	3L_22599489_SNP [dm3] 3L_22606389_SNP [dm6]	G	A	1.408e^-4	0.819	UTR_5_PRIME CG6914 INTRON CG14459	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18073603	3L_18073603_SNP [dm3] 3L_18080503_SNP [dm6]	T	C	1.412e^-4	0.819	DOWNSTREAM CR43253 INTERGENIC
3R	18246635	3R_18246635_SNP [dm3] 3R_22420913_SNP [dm6]	C	T	1.413e^-4	0.819	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25251363	3R_25251363_SNP [dm3] 3R_29425641_SNP [dm6]	G	A	1.413e^-4	0.819	INTRON Ptp99A
2R	19107554	2R_19107554_SNP [dm3] 2R_23220031_SNP [dm6]	G	A	1.422e^-4	0.819	INTERGENIC
3R	14960354	3R_14960354_SNP [dm3] 3R_19134632_SNP [dm6]	A	T	1.422e^-4	0.819	UTR_3_PRIME Cyp12a5 UPSTREAM Cyp12a4
3R	17023361	3R_17023361_SNP [dm3] 3R_21197639_SNP [dm6]	T	C	1.437e^-4	0.819	INTRON SNF4Agamma
2L	8515387	2L_8515387_SNP [dm3] 2L_8515387_SNP [dm6]	C	T	1.443e^-4	0.819	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12788320	2R_12788320_SNP [dm3] 2R_16900815_SNP [dm6]	A	C	1.448e^-4	0.819	INTRON inaC
3R	4026628	3R_4026628_SNP [dm3] 3R_8200906_SNP [dm6]	A	G	1.449e^-4	0.819	UPSTREAM CR43303 INTERGENIC	TF binding site mE1_TFBS_cad
2R	18536319	2R_18536319_SNP [dm3] 2R_22648814_SNP [dm6]	C	A	1.462e^-4	0.819	UPSTREAM CG34445 DOWNSTREAM CG3746 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10183644	3R_10183644_SNP [dm3] 3R_14357922_SNP [dm6]	C	T	1.472e^-4	0.819	DOWNSTREAM CG31320 INTRON NK7.1
2R	5212616	2R_5212616_SNP [dm3] 2R_9325111_SNP [dm6]	G	T	1.472e^-4	0.819	INTRON CG13954 & 1 other
3R	16440414	3R_16440414_SNP [dm3] 3R_20614692_SNP [dm6]	T	C	1.476e^-4	0.819	SYNONYMOUS_CODING CG15923	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11863011	2L_11863011_SNP [dm3] 2L_11863011_SNP [dm6]	A	C	1.480e^-4	0.819	INTRON Pde1c
2R	1046042	2R_1046042_SNP [dm3] 2R_5158537_SNP [dm6]	C	T	1.482e^-4	0.819	INTERGENIC	transposable element FlyBase
3R	13760305	3R_13760305_INS [dm3] 3R_17934583_INS [dm6]	C	CT	1.485e^-4	0.819	INTRON cpo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13237061	2L_13237061_SNP [dm3] 2L_13237061_SNP [dm6]	C	A	1.486e^-4	0.819	INTRON CG5867
3R	9239973	3R_9239973_SNP [dm3] 3R_13414251_SNP [dm6]	T	C	1.494e^-4	0.819	INTRON yellow-e
X	5581924	X_5581924_SNP [dm3] X_5687891_SNP [dm6]	C	A	1.500e^-4	0.819	INTRON CG3160	TF binding site mE1_TFBS_sens
2L	8507808	2L_8507808_SNP [dm3] 2L_8507808_SNP [dm6]	C	A	1.501e^-4	0.819	UPSTREAM Dh31 INTERGENIC
3R	13332524	3R_13332524_SNP [dm3] 3R_17506802_SNP [dm6]	A	G	1.503e^-4	0.819	INTERGENIC
3L	1552639	3L_1552639_SNP [dm3] 3L_1552639_SNP [dm6]	G	A	1.504e^-4	0.819	UTR_3_PRIME Cct1 UPSTREAM Cct2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9474198	X_9474198_SNP [dm3] X_9580165_SNP [dm6]	T	C	1.505e^-4	0.819	UPSTREAM CG32699 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16969332	2R_16969332_SNP [dm3] 2R_21081827_SNP [dm6]	C	A	1.505e^-4	0.819	INTRON Treh
3R	13660757	3R_13660757_SNP [dm3] 3R_17835035_SNP [dm6]	A	T	1.506e^-4	0.819	INTRON tinc
3R	11002221	3R_11002221_SNP [dm3] 3R_15176499_SNP [dm6]	A	G	1.514e^-4	0.819	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
X	16534377	X_16534377_SNP [dm3] X_16640344_SNP [dm6]	G	A	1.518e^-4	0.819	UTR_5_PRIME SmG UPSTREAM mthl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14893309	3R_14893309_SNP [dm3] 3R_19067587_SNP [dm6]	A	T	1.522e^-4	0.819	INTRON cdi
3L	5059165	3L_5059165_SNP [dm3] 3L_5059165_SNP [dm6]	A	C	1.524e^-4	0.819	INTRON Con
3R	24896751	3R_24896751_SNP [dm3] 3R_29071029_SNP [dm6]	A	T	1.529e^-4	0.819	INTRON CG11873	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	19649705	X_19649705_SNP [dm3] X_19755672_SNP [dm6]	A	G	1.529e^-4	0.819	INTRON Pmp70
3L	3846844	3L_3846844_SNP [dm3] 3L_3846844_SNP [dm6]	A	T	1.539e^-4	0.819	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3R	22321998	3R_22321998_SNP [dm3] 3R_26496276_SNP [dm6]	C	T	1.541e^-4	0.819	INTRON plum
3L	3564831	3L_3564831_SNP [dm3] 3L_3564831_SNP [dm6]	A	G	1.541e^-4	0.819	INTRON Eip63E
3L	15491708	3L_15491708_SNP [dm3] 3L_15498608_SNP [dm6]	T	G	1.546e^-4	0.819	SYNONYMOUS_CODING CG7276 UPSTREAM CG7275 DOWNSTREAM CG13455	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2186353	3L_2186353_SNP [dm3] 3L_2186353_SNP [dm6]	C	T	1.553e^-4	0.819	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16411801	3L_16411801_SNP [dm3] 3L_16418701_SNP [dm6]	T	C	1.554e^-4	0.819	SYNONYMOUS_CODING Aats-tyr UPSTREAM CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18450075	2L_18450075_SNP [dm3] 2L_18450075_SNP [dm6]	C	T	1.555e^-4	0.819	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	12445309	3R_12445309_SNP [dm3] 3R_16619587_SNP [dm6]	T	C	1.557e^-4	0.819	DOWNSTREAM mir-2494 INTRON CG17560	TF binding site mE1_TFBS_bab1
3L	15504681	3L_15504681_SNP [dm3] 3L_15511581_SNP [dm6]	G	T	1.566e^-4	0.819	UTR_5_PRIME Eip71CD UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5056348	3L_5056348_SNP [dm3] 3L_5056348_SNP [dm6]	C	A	1.572e^-4	0.819	INTRON Con
3L	19236843	3L_19236843_SNP [dm3] 3L_19243743_SNP [dm6]	C	A	1.572e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15674881	3L_15674881_DEL [dm3] 3L_15681781_DEL [dm6]	AGTCCAA	A	1.576e^-4	0.819	DOWNSTREAM CG7304
X	9474288	X_9474288_SNP [dm3] X_9580255_SNP [dm6]	A	T	1.576e^-4	0.819	UPSTREAM CG32699 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	9474306	X_9474306_SNP [dm3] X_9580273_SNP [dm6]	T	C	1.576e^-4	0.819	UPSTREAM CG32699 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19003743	X_19003743_SNP [dm3] X_19109710_SNP [dm6]	G	T	1.582e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6111295	3R_6111295_SNP [dm3] 3R_10285573_SNP [dm6]	C	G	1.585e^-4	0.819	INTRON CG43143	TF binding site BDTNP1_TFBS_twi
3R	17000639	3R_17000639_SNP [dm3] 3R_21174917_SNP [dm6]	C	T	1.586e^-4	0.819	NON_SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22373929	3R_22373929_DEL [dm3] 3R_26548207_DEL [dm6]	TATTCGCT	T	1.592e^-4	0.819	INTRON scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20607706	2R_20607706_SNP [dm3] 2R_24720183_SNP [dm6]	T	C	1.596e^-4	0.819	INTRON Mid1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10961967	3L_10961967_SNP [dm3] 3L_10968867_SNP [dm6]	A	T	1.615e^-4	0.819	INTERGENIC
3R	10877162	3R_10877162_SNP [dm3] 3R_15051440_SNP [dm6]	G	T	1.617e^-4	0.819	INTERGENIC
X	10771611	X_10771611_SNP [dm3] X_10877578_SNP [dm6]	G	T	1.620e^-4	0.819	UTR_5_PRIME CG1637 DOWNSTREAM Ork1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
X	5581450	X_5581450_SNP [dm3] X_5687417_SNP [dm6]	C	G	1.623e^-4	0.819	INTRON CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8047119	3R_8047119_SNP [dm3] 3R_12221397_SNP [dm6]	G	T	1.623e^-4	0.819	UPSTREAM CG10014 INTRON CG4860	TF binding site mE1_TFBS_chinmo
3R	16909327	3R_16909327_SNP [dm3] 3R_21083605_SNP [dm6]	C	T	1.628e^-4	0.819	UTR_3_PRIME RhoGAP93B
2L	32124	2L_32124_SNP [dm3] 2L_32124_SNP [dm6]	C	A	1.643e^-4	0.819	NON_SYNONYMOUS_CODING Cda5 INTRON Cda5	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	13665102	3R_13665102_SNP [dm3] 3R_17839380_SNP [dm6]	T	C	1.644e^-4	0.819	INTRON tinc
2L	13239277	2L_13239277_DEL [dm3] 2L_13239277_DEL [dm6]	ACAATTACCTA...	A	1.655e^-4	0.819	UTR_3_PRIME CG5867 UPSTREAM CG5945
3L	15269430	3L_15269430_SNP [dm3] 3L_15276330_SNP [dm6]	T	C	1.656e^-4	0.819	INTERGENIC	insulator Insulator_Class_II.mE01
X	4096422	X_4096422_SNP [dm3] X_4202389_SNP [dm6]	A	C	1.672e^-4	0.819	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7364542	2L_7364542_SNP [dm3] 2L_7364542_SNP [dm6]	C	T	1.679e^-4	0.819	UTR_5_PRIME Wnt10
X	19700880	X_19700880_SNP [dm3] X_19806847_SNP [dm6]	C	A	1.680e^-4	0.819	INTERGENIC
2L	6243809	2L_6243809_SNP [dm3] 2L_6243809_SNP [dm6]	C	T	1.681e^-4	0.819	INTERGENIC
X	12318134	X_12318134_SNP [dm3] X_12424101_SNP [dm6]	T	A	1.684e^-4	0.819	INTERGENIC
2L	6243818	2L_6243818_SNP [dm3] 2L_6243818_SNP [dm6]	G	A	1.698e^-4	0.819	INTERGENIC
3R	13656537	3R_13656537_SNP [dm3] 3R_17830815_SNP [dm6]	G	A	1.699e^-4	0.819	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8233903	3R_8233903_SNP [dm3] 3R_12408181_SNP [dm6]	C	T	1.701e^-4	0.819	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	12465660	2R_12465660_SNP [dm3] 2R_16578155_SNP [dm6]	G	A	1.704e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	5784138	2R_5784138_SNP [dm3] 2R_9896633_SNP [dm6]	A	G	1.710e^-4	0.819	NON_SYNONYMOUS_CODING CG30007
2R	19384771	2R_19384771_SNP [dm3] 2R_23497248_SNP [dm6]	G	C	1.717e^-4	0.819	INTERGENIC
2L	7900729	2L_7900729_SNP [dm3] 2L_7900729_SNP [dm6]	T	C	1.718e^-4	0.819	INTRON Snoo
2L	11910595	2L_11910595_SNP [dm3] 2L_11910595_SNP [dm6]	A	C	1.721e^-4	0.819	INTRON Pde1c
X	15097100	X_15097100_SNP [dm3] X_15203067_SNP [dm6]	C	T	1.725e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_inv
3R	21009365	3R_21009365_SNP [dm3] 3R_25183643_SNP [dm6]	T	C	1.728e^-4	0.819	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	7389032	3R_7389032_SNP [dm3] 3R_11563310_SNP [dm6]	G	A	1.731e^-4	0.819	UPSTREAM sea DOWNSTREAM fabp INTRON fabp & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12759492	2L_12759492_DEL [dm3] 2L_12759492_DEL [dm6]	ATAG	C	1.732e^-4	0.819	DOWNSTREAM CG15483 INTERGENIC
3R	17058827	3R_17058827_SNP [dm3] 3R_21233105_SNP [dm6]	C	G	1.733e^-4	0.819	INTRON e	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	5904	2L_5904_SNP [dm3] 2L_5904_SNP [dm6]	C	A	1.741e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17110367	2L_17110367_SNP [dm3] 2L_17110367_SNP [dm6]	G	C	1.742e^-4	0.819	INTERGENIC
3L	3444507	3L_3444507_SNP [dm3] 3L_3444507_SNP [dm6]	G	T	1.746e^-4	0.819	INTRON eIF5B	TF binding site BDTNP1_TFBS_da
2L	16610636	2L_16610636_SNP [dm3] 2L_16610636_SNP [dm6]	C	A	1.754e^-4	0.819	DOWNSTREAM CG4631 INTRON CG42389
3R	21675579	3R_21675579_SNP [dm3] 3R_25849857_SNP [dm6]	G	A	1.760e^-4	0.819	DOWNSTREAM CG14545 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16895686	3R_16895686_SNP [dm3] 3R_21069964_SNP [dm6]	T	A	1.773e^-4	0.819	DOWNSTREAM r-l & 1 other INTRON AnxB9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2R	7461583	2R_7461583_SNP [dm3] 2R_11574078_SNP [dm6]	C	A	1.773e^-4	0.819	INTERGENIC
3R	13970175	3R_13970175_SNP [dm3] 3R_18144453_SNP [dm6]	T	G	1.776e^-4	0.819	INTERGENIC
3R	10227446	3R_10227446_SNP [dm3] 3R_14401724_SNP [dm6]	A	T	1.786e^-4	0.819	INTRON cv-c
2L	8517273	2L_8517273_SNP [dm3] 2L_8517273_SNP [dm6]	A	G	1.789e^-4	0.819	NON_SYNONYMOUS_CODING mRpL51 UPSTREAM CG13090 DOWNSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6861810	3R_6861810_SNP [dm3] 3R_11036088_SNP [dm6]	A	T	1.789e^-4	0.819	INTRON CG34114
2L	9753160	2L_9753160_SNP [dm3] 2L_9753160_SNP [dm6]	G	A	1.791e^-4	0.819	INTERGENIC
3R	667672	3R_667672_SNP [dm3] 3R_4841950_SNP [dm6]	A	T	1.792e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	11002203	3R_11002203_DEL [dm3] 3R_15176481_DEL [dm6]	AA	A	1.803e^-4	0.819	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
2L	13250340	2L_13250340_SNP [dm3] 2L_13250340_SNP [dm6]	G	A	1.804e^-4	0.819	DOWNSTREAM CG16820 INTERGENIC
2R	18259372	2R_18259372_SNP [dm3] 2R_22371867_SNP [dm6]	G	A	1.812e^-4	0.819	INTRON Liprin-gamma
2L	7182938	2L_7182938_SNP [dm3] 2L_7182938_SNP [dm6]	G	A	1.815e^-4	0.819	INTRON CG4495	TF binding site BDTNP1_TFBS_twi
X	16534453	X_16534453_SNP [dm3] X_16640420_SNP [dm6]	T	A	1.821e^-4	0.819	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	7332983	X_7332983_INS [dm3] X_7438950_INS [dm6]	T	TT	1.823e^-4	0.819	INTERGENIC
3L	16753091	3L_16753091_SNP [dm3] 3L_16759991_SNP [dm6]	G	A	1.826e^-4	0.819	INTERGENIC
3R	12038404	3R_12038404_SNP [dm3] 3R_16212682_SNP [dm6]	T	G	1.833e^-4	0.819	UPSTREAM CR45642 INTERGENIC
3R	5700180	3R_5700180_SNP [dm3] 3R_9874458_SNP [dm6]	C	T	1.840e^-4	0.819	UPSTREAM Glut4EF INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	1.846e^-4	0.819	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10199152	3L_10199152_SNP [dm3] 3L_10206052_SNP [dm6]	G	A	1.849e^-4	0.819	EXON CR44538
3R	11008475	3R_11008475_SNP [dm3] 3R_15182753_SNP [dm6]	T	A	1.850e^-4	0.819	INTRON Gyc88E
2L	15474764	2L_15474764_SNP [dm3] 2L_15474764_SNP [dm6]	T	C	1.853e^-4	0.819	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26981530	3R_26981530_DEL [dm3] 3R_31155808_DEL [dm6]	GG	G	1.855e^-4	0.819	INTRON Gycbeta100B
2L	13246930	2L_13246930_SNP [dm3] 2L_13246930_SNP [dm6]	C	T	1.858e^-4	0.819	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11682725	X_11682725_SNP [dm3] X_11788692_SNP [dm6]	A	T	1.859e^-4	0.819	UTR_5_PRIME Karl UPSTREAM Karl INTRON Karl	TF binding site BDTNP1_TFBS_dl
3R	7462233	3R_7462233_SNP [dm3] 3R_11636511_SNP [dm6]	G	C	1.860e^-4	0.819	SYNONYMOUS_CODING Csk UPSTREAM CR44137	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5056658	3L_5056658_SNP [dm3] 3L_5056658_SNP [dm6]	T	G	1.863e^-4	0.819	INTRON Con
3R	19995838	3R_19995838_SNP [dm3] 3R_24170116_SNP [dm6]	G	T	1.871e^-4	0.819	UPSTREAM CG5510 INTERGENIC
3R	16442945	3R_16442945_SNP [dm3] 3R_20617223_SNP [dm6]	A	G	1.872e^-4	0.819	UPSTREAM CG5466 & 1 other INTERGENIC
2L	18450187	2L_18450187_SNP [dm3] 2L_18450187_SNP [dm6]	C	A	1.877e^-4	0.819	INTRON bsf	TF binding site mE1_TFBS_cad
3R	8132021	3R_8132021_SNP [dm3] 3R_12306299_SNP [dm6]	G	T	1.877e^-4	0.819	INTERGENIC
3R	26646268	3R_26646268_SNP [dm3] 3R_30820546_SNP [dm6]	T	G	1.883e^-4	0.819	INTRON cindr	TF binding site BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	2311050	3R_2311050_SNP [dm3] 3R_6485328_SNP [dm6]	A	T	1.888e^-4	0.819	INTRON CG15186
3L	3872260	3L_3872260_SNP [dm3] 3L_3872260_SNP [dm6]	T	C	1.890e^-4	0.819	INTERGENIC
3R	14092066	3R_14092066_SNP [dm3] 3R_18266344_SNP [dm6]	T	A	1.890e^-4	0.819	INTERGENIC
3R	8286537	3R_8286537_SNP [dm3] 3R_12460815_SNP [dm6]	C	T	1.893e^-4	0.819	UPSTREAM CG5961 INTRON CG12267	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4096412	X_4096412_SNP [dm3] X_4202379_SNP [dm6]	A	T	1.899e^-4	0.819	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4275883	2R_4275883_DEL [dm3] 2R_8388378_DEL [dm6]	TTAC	T	1.901e^-4	0.819	INTRON pdm3
3R	16909347	3R_16909347_SNP [dm3] 3R_21083625_SNP [dm6]	C	A	1.905e^-4	0.819	UTR_3_PRIME RhoGAP93B
2R	12184227	2R_12184227_SNP [dm3] 2R_16296722_SNP [dm6]	G	A	1.907e^-4	0.819	SYNONYMOUS_CODING Atg9 DOWNSTREAM CG43265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13930791	X_13930791_SNP [dm3] X_14036758_SNP [dm6]	T	C	1.911e^-4	0.819	INTERGENIC
3R	11309215	3R_11309215_SNP [dm3] 3R_15483493_SNP [dm6]	C	T	1.914e^-4	0.819	SYNONYMOUS_CODING Rh6 DOWNSTREAM CG14870	TF binding site mE1_TFBS_chinmo
2L	5483007	2L_5483007_SNP [dm3] 2L_5483007_SNP [dm6]	A	G	1.917e^-4	0.819	INTERGENIC
2L	9844088	2L_9844088_SNP [dm3] 2L_9844088_SNP [dm6]	C	G	1.924e^-4	0.82	INTRON nAChRalpha6
2R	13504560	2R_13504560_SNP [dm3] 2R_17617055_SNP [dm6]	G	T	1.929e^-4	0.82	UTR_3_PRIME CG44403 DOWNSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5985880	3L_5985880_SNP [dm3] 3L_5992780_SNP [dm6]	C	A	1.931e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	11199302	2L_11199302_SNP [dm3] 2L_11199302_SNP [dm6]	A	T	1.942e^-4	0.821	INTRON Ca-beta
3L	18564174	3L_18564174_SNP [dm3] 3L_18571074_SNP [dm6]	T	C	1.950e^-4	0.821	INTRON AstC-R1
2L	4130164	2L_4130164_SNP [dm3] 2L_4130164_SNP [dm6]	C	T	1.953e^-4	0.821	INTERGENIC
3R	14960942	3R_14960942_SNP [dm3] 3R_19135220_SNP [dm6]	T	G	1.953e^-4	0.821	SYNONYMOUS_CODING Cyp12a4 DOWNSTREAM Cyp12a5
X	14434859	X_14434859_SNP [dm3] X_14540826_SNP [dm6]	A	T	1.959e^-4	0.821	EXON CR45521
3R	25476540	3R_25476540_SNP [dm3] 3R_29650818_SNP [dm6]	C	A	1.962e^-4	0.821	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
2R	13449198	2R_13449198_SNP [dm3] 2R_17561693_SNP [dm6]	G	T	1.964e^-4	0.821	SPLICE_SITE_REGION Klp54D INTRON Klp54D
2L	7087907	2L_7087907_INS [dm3] 2L_7087907_INS [dm6]	T	TTATTT	1.980e^-4	0.821	INTERGENIC
2R	19498710	2R_19498710_SNP [dm3] 2R_23611187_SNP [dm6]	A	T	1.983e^-4	0.821	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	9474272	X_9474272_SNP [dm3] X_9580239_SNP [dm6]	A	T	1.993e^-4	0.821	UPSTREAM CG32699 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10557310	3R_10557310_INS [dm3] 3R_14731588_INS [dm6]	A	AA	2.000e^-4	0.821	UPSTREAM CG7530 DOWNSTREAM eff INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10772366	X_10772366_SNP [dm3] X_10878333_SNP [dm6]	G	A	2.004e^-4	0.821	UTR_3_PRIME Ork1 UPSTREAM CG1637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6507016	2R_6507016_SNP [dm3] 2R_10619511_SNP [dm6]	C	T	2.007e^-4	0.821	INTRON CG11883
2R	18536362	2R_18536362_SNP [dm3] 2R_22648857_SNP [dm6]	A	G	2.024e^-4	0.821	UPSTREAM CG34445 DOWNSTREAM CG3746 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	19108350	3R_19108350_SNP [dm3] 3R_23282628_SNP [dm6]	G	C	2.030e^-4	0.821	INTRON Cdc16	TF binding site mE1_TFBS_sens
3L	13045280	3L_13045280_SNP [dm3] 3L_13052180_SNP [dm6]	C	T	2.033e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	14092960	3R_14092960_SNP [dm3] 3R_18267238_SNP [dm6]	A	T	2.037e^-4	0.821	UPSTREAM CG18599 INTERGENIC
X	9476185	X_9476185_SNP [dm3] X_9582152_SNP [dm6]	G	A	2.045e^-4	0.821	UPSTREAM CR45540 INTERGENIC
3L	11838216	3L_11838216_SNP [dm3] 3L_11845116_SNP [dm6]	C	G	2.053e^-4	0.821	INTERGENIC
X	5749425	X_5749425_SNP [dm3] X_5855392_SNP [dm6]	G	C	2.059e^-4	0.821	DOWNSTREAM CG43136 INTERGENIC
3R	19214557	3R_19214557_SNP [dm3] 3R_23388835_SNP [dm6]	C	A	2.060e^-4	0.821	NON_SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11910676	2L_11910676_SNP [dm3] 2L_11910676_SNP [dm6]	C	T	2.068e^-4	0.821	INTRON Pde1c
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	2.074e^-4	0.821	INTRON Octbeta3R
2L	5608195	2L_5608195_INS [dm3] 2L_5608195_INS [dm6]	C	CC	2.080e^-4	0.821	INTRON CG14010
3L	16297975	3L_16297975_SNP [dm3] 3L_16304875_SNP [dm6]	G	T	2.093e^-4	0.821	DOWNSTREAM CG13043 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11592185	2L_11592185_SNP [dm3] 2L_11592185_SNP [dm6]	G	T	2.095e^-4	0.821	UPSTREAM Acp33A INTRON kek2	TF binding site mE1_TFBS_inv
3L	9822875	3L_9822875_SNP [dm3] 3L_9829775_SNP [dm6]	C	A	2.095e^-4	0.821	UTR_5_PRIME CG43897 INTRON CG43897
2L	13239024	2L_13239024_SNP [dm3] 2L_13239024_SNP [dm6]	T	C	2.100e^-4	0.821	UPSTREAM CG5945 INTRON CG5867
2L	4130163	2L_4130163_SNP [dm3] 2L_4130163_SNP [dm6]	G	A	2.100e^-4	0.821	INTERGENIC
3L	19236794	3L_19236794_SNP [dm3] 3L_19243694_SNP [dm6]	G	A	2.102e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8515314	2L_8515314_SNP [dm3] 2L_8515314_SNP [dm6]	A	C	2.108e^-4	0.821	UPSTREAM CG13097 INTRON PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	13665164	3R_13665164_SNP [dm3] 3R_17839442_SNP [dm6]	C	T	2.121e^-4	0.821	INTRON tinc
3L	2224671	3L_2224671_SNP [dm3] 3L_2224671_SNP [dm6]	G	A	2.123e^-4	0.821	INTERGENIC
3L	9832155	3L_9832155_SNP [dm3] 3L_9839055_SNP [dm6]	C	T	2.124e^-4	0.821	UPSTREAM Cdk8 DOWNSTREAM RasGAP1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	14647540	3R_14647540_SNP [dm3] 3R_18821818_SNP [dm6]	C	T	2.129e^-4	0.821	INTRON CG18208
X	10940807	X_10940807_SNP [dm3] X_11046774_SNP [dm6]	T	C	2.140e^-4	0.821	INTRON CG11160
3L	3979638	3L_3979638_SNP [dm3] 3L_3979638_SNP [dm6]	T	C	2.142e^-4	0.821	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16969293	2R_16969293_SNP [dm3] 2R_21081788_SNP [dm6]	A	T	2.145e^-4	0.821	INTRON Treh
X	2669523	X_2669523_SNP [dm3] X_2775490_SNP [dm6]	A	C	2.148e^-4	0.821	INTRON kirre
3R	10184289	3R_10184289_SNP [dm3] 3R_14358567_SNP [dm6]	T	A	2.151e^-4	0.821	UTR_3_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26569735	3R_26569735_SNP [dm3] 3R_30744013_SNP [dm6]	G	T	2.153e^-4	0.821	UTR_3_PRIME CG15543 DOWNSTREAM Npc2g & 1 other
3L	5395055	3L_5395055_SNP [dm3] 3L_5401955_SNP [dm6]	A	G	2.158e^-4	0.821	INTERGENIC
3L	5074563	3L_5074563_SNP [dm3] 3L_5074563_SNP [dm6]	T	A	2.166e^-4	0.821	INTRON Con
3R	15615004	3R_15615004_SNP [dm3] 3R_19789282_SNP [dm6]	C	G	2.170e^-4	0.821	UPSTREAM tRNA:V3b:92Bb INTERGENIC
3R	10150762	3R_10150762_SNP [dm3] 3R_14325040_SNP [dm6]	T	C	2.174e^-4	0.821	NON_SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_sens
3R	8222362	3R_8222362_SNP [dm3] 3R_12396640_SNP [dm6]	A	T	2.178e^-4	0.821	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
X	6636661	X_6636661_SNP [dm3] X_6742628_SNP [dm6]	T	C	2.180e^-4	0.821	UPSTREAM snoRNA:Psi28S-3436b DOWNSTREAM snoRNA:Psi28S-3436a & 1 other INTRON RpL17	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7435797	3R_7435797_SNP [dm3] 3R_11610075_SNP [dm6]	A	T	2.181e^-4	0.821	INTRON Jupiter	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	6452915	3L_6452915_SNP [dm3] 3L_6459815_SNP [dm6]	T	C	2.187e^-4	0.821	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
3R	9310436	3R_9310436_SNP [dm3] 3R_13484714_SNP [dm6]	G	T	2.190e^-4	0.821	INTERGENIC
3R	9310440	3R_9310440_SNP [dm3] 3R_13484718_SNP [dm6]	G	C	2.190e^-4	0.821	INTERGENIC
2L	12613503	2L_12613503_SNP [dm3] 2L_12613503_SNP [dm6]	T	C	2.193e^-4	0.821	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Kr mE1_TFBS_Trl
3L	16230099	3L_16230099_SNP [dm3] 3L_16236999_SNP [dm6]	C	T	2.193e^-4	0.821	UTR_3_PRIME l_3_72Dp UPSTREAM l_3_72Dr
X	10771612	X_10771612_SNP [dm3] X_10877579_SNP [dm6]	T	G	2.202e^-4	0.821	UTR_5_PRIME CG1637 DOWNSTREAM Ork1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
3R	17727459	3R_17727459_SNP [dm3] 3R_21901737_SNP [dm6]	A	T	2.204e^-4	0.821	INTRON CG6678
3R	10599383	3R_10599383_SNP [dm3] 3R_14773661_SNP [dm6]	C	T	2.212e^-4	0.821	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	2.220e^-4	0.821	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	17726850	X_17726850_SNP [dm3] X_17832817_SNP [dm6]	A	C	2.227e^-4	0.821	INTRON CG6398	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	2087325	2L_2087325_SNP [dm3] 2L_2087325_SNP [dm6]	A	C	2.229e^-4	0.821	INTRON dpr3
3R	7391220	3R_7391220_SNP [dm3] 3R_11565498_SNP [dm6]	C	G	2.233e^-4	0.821	INTRON fabp & 1 other
3R	1905072	3R_1905072_SNP [dm3] 3R_6079350_SNP [dm6]	A	C	2.237e^-4	0.821	INTERGENIC
3R	10901510	3R_10901510_INS [dm3] 3R_15075788_INS [dm6]	C	CC	2.239e^-4	0.821	INTRON dpr9
X	19701450	X_19701450_SNP [dm3] X_19807417_SNP [dm6]	T	C	2.241e^-4	0.821	INTERGENIC
3L	16873245	3L_16873245_SNP [dm3] 3L_16880145_SNP [dm6]	T	A	2.241e^-4	0.821	DOWNSTREAM CG32170 INTRON Lmpt
3R	9241195	3R_9241195_SNP [dm3] 3R_13415473_SNP [dm6]	T	A	2.244e^-4	0.821	UPSTREAM yellow-e INTERGENIC
3R	17737592	3R_17737592_SNP [dm3] 3R_21911870_SNP [dm6]	G	A	2.245e^-4	0.821	NON_SYNONYMOUS_CODING CG6690
3R	13970223	3R_13970223_SNP [dm3] 3R_18144501_SNP [dm6]	A	G	2.245e^-4	0.821	INTERGENIC
3L	13290752	3L_13290752_SNP [dm3] 3L_13297652_SNP [dm6]	A	G	2.246e^-4	0.821	UPSTREAM Sfp70A4 & 1 other DOWNSTREAM CR45253 EXON CR45255
3L	5058055	3L_5058055_INS [dm3] 3L_5058055_INS [dm6]	T	TT	2.254e^-4	0.821	INTRON Con
2L	41860	2L_41860_SNP [dm3] 2L_41860_SNP [dm6]	T	G	2.258e^-4	0.821	INTRON Cda5
3R	22088039	3R_22088039_SNP [dm3] 3R_26262317_SNP [dm6]	C	T	2.260e^-4	0.821	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12769980	3L_12769980_SNP [dm3] 3L_12776880_SNP [dm6]	G	T	2.265e^-4	0.821	SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
X	18892042	X_18892042_SNP [dm3] X_18998009_SNP [dm6]	G	T	2.266e^-4	0.821	INTRON CG43759
X	16533822	X_16533822_SNP [dm3] X_16639789_SNP [dm6]	C	T	2.271e^-4	0.821	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7100532	2L_7100532_SNP [dm3] 2L_7100532_SNP [dm6]	A	G	2.271e^-4	0.821	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	8237029	3R_8237029_SNP [dm3] 3R_12411307_SNP [dm6]	T	C	2.272e^-4	0.821	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9653056	X_9653056_SNP [dm3] X_9759023_SNP [dm6]	T	C	2.283e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3L	5059312	3L_5059312_SNP [dm3] 3L_5059312_SNP [dm6]	C	T	2.294e^-4	0.821	INTRON Con
3R	10554632	3R_10554632_SNP [dm3] 3R_14728910_SNP [dm6]	T	A	2.300e^-4	0.821	UTR_5_PRIME CG7530 INTRON CG7530
2R	8936200	2R_8936200_SNP [dm3] 2R_13048695_SNP [dm6]	C	T	2.301e^-4	0.821	DOWNSTREAM CG13324 INTERGENIC
3L	5056840	3L_5056840_SNP [dm3] 3L_5056840_SNP [dm6]	T	C	2.303e^-4	0.821	INTRON Con
3R	26135160	3R_26135160_SNP [dm3] 3R_30309438_SNP [dm6]	T	A	2.303e^-4	0.821	INTRON hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10962899	3L_10962899_INS [dm3] 3L_10969799_INS [dm6]	C	CG	2.312e^-4	0.821	INTERGENIC
3R	18246639	3R_18246639_SNP [dm3] 3R_22420917_SNP [dm6]	A	T	2.314e^-4	0.821	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26042038	3R_26042038_SNP [dm3] 3R_30216316_SNP [dm6]	C	T	2.318e^-4	0.821	UPSTREAM CecC INTERGENIC
2R	12687497	2R_12687497_SNP [dm3] 2R_16799992_SNP [dm6]	T	A	2.320e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	12145560	3R_12145560_SNP [dm3] 3R_16319838_SNP [dm6]	A	C	2.321e^-4	0.821	INTRON Sulf1
2R	6987986	2R_6987986_SNP [dm3] 2R_11100481_SNP [dm6]	T	A	2.331e^-4	0.821	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18120031	3L_18120031_SNP [dm3] 3L_18126931_SNP [dm6]	G	A	2.335e^-4	0.821	INTERGENIC
3L	4291287	3L_4291287_SNP [dm3] 3L_4291287_SNP [dm6]	C	T	2.337e^-4	0.821	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
X	5723827	X_5723827_SNP [dm3] X_5829794_SNP [dm6]	A	C	2.341e^-4	0.821	INTRON CG15765
2R	12995974	2R_12995974_SNP [dm3] 2R_17108469_SNP [dm6]	C	A	2.348e^-4	0.821	UPSTREAM CG15611 DOWNSTREAM CG30456 INTERGENIC
2R	8229305	2R_8229305_SNP [dm3] 2R_12341800_SNP [dm6]	T	G	2.356e^-4	0.821	INTRON CG8839	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	17203729	X_17203729_SNP [dm3] X_17309696_SNP [dm6]	C	A	2.358e^-4	0.821	INTERGENIC
3L	7824791	3L_7824791_SNP [dm3] 3L_7831691_SNP [dm6]	A	G	2.361e^-4	0.821	UTR_5_PRIME Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_sens
2R	8832727	2R_8832727_SNP [dm3] 2R_12945222_SNP [dm6]	C	T	2.366e^-4	0.821	UTR_5_PRIME Mdr49 UPSTREAM Mdr49
X	14616237	X_14616237_SNP [dm3] X_14722204_SNP [dm6]	G	A	2.367e^-4	0.821	INTRON NetB
2L	9753148	2L_9753148_SNP [dm3] 2L_9753148_SNP [dm6]	T	G	2.388e^-4	0.821	INTERGENIC
3R	22941943	3R_22941943_SNP [dm3] 3R_27116221_SNP [dm6]	C	T	2.395e^-4	0.821	SYNONYMOUS_CODING CG6066 UPSTREAM CG5880	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1200721	2L_1200721_SNP [dm3] 2L_1200721_SNP [dm6]	G	A	2.396e^-4	0.821	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
X	9474158	X_9474158_SNP [dm3] X_9580125_SNP [dm6]	A	G	2.396e^-4	0.821	UPSTREAM CG32699 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	21675658	3R_21675658_SNP [dm3] 3R_25849936_SNP [dm6]	C	A	2.418e^-4	0.821	DOWNSTREAM CG14545 INTERGENIC
3R	24233391	3R_24233391_SNP [dm3] 3R_28407669_SNP [dm6]	G	A	2.420e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1825050	2L_1825050_SNP [dm3] 2L_1825050_SNP [dm6]	T	A	2.422e^-4	0.821	NON_SYNONYMOUS_CODING CG31664
3L	16873250	3L_16873250_SNP [dm3] 3L_16880150_SNP [dm6]	C	G	2.429e^-4	0.821	DOWNSTREAM CG32170 INTRON Lmpt
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	2.431e^-4	0.821	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	2567656	3L_2567656_SNP [dm3] 3L_2567656_SNP [dm6]	T	C	2.432e^-4	0.821	SYNONYMOUS_CODING msn
3L	15269911	3L_15269911_SNP [dm3] 3L_15276811_SNP [dm6]	C	T	2.433e^-4	0.821	INTERGENIC
2L	8515461	2L_8515461_SNP [dm3] 2L_8515461_SNP [dm6]	T	C	2.435e^-4	0.821	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	955937	2L_955937_SNP [dm3] 2L_955937_SNP [dm6]	C	A	2.435e^-4	0.821	INTRON CG4341
3R	9275721	3R_9275721_SNP [dm3] 3R_13449999_SNP [dm6]	G	A	2.443e^-4	0.821	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	13970179	3R_13970179_SNP [dm3] 3R_18144457_SNP [dm6]	G	A	2.446e^-4	0.821	INTERGENIC
3L	4889607	3L_4889607_SNP [dm3] 3L_4889607_SNP [dm6]	G	A	2.451e^-4	0.821	SPLICE_SITE_REGION CG17150 INTRON CG17150
2L	8515035	2L_8515035_SNP [dm3] 2L_8515035_SNP [dm6]	G	T	2.452e^-4	0.821	UPSTREAM PIG-U & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4578140	3L_4578140_SNP [dm3] 3L_4578140_SNP [dm6]	G	A	2.456e^-4	0.821	INTRON CG42540
2R	12995727	2R_12995727_SNP [dm3] 2R_17108222_SNP [dm6]	C	T	2.459e^-4	0.821	UPSTREAM CG15611 DOWNSTREAM CG30456 INTERGENIC
X	12291426	X_12291426_SNP [dm3] X_12397393_SNP [dm6]	G	A	2.460e^-4	0.821	INTERGENIC
2L	17110352	2L_17110352_SNP [dm3] 2L_17110352_SNP [dm6]	G	A	2.466e^-4	0.821	INTERGENIC
3L	6959493	3L_6959493_SNP [dm3] 3L_6966393_SNP [dm6]	A	T	2.468e^-4	0.821	SYNONYMOUS_CODING CG10064	TF binding site mE1_TFBS_cad
3L	12773848	3L_12773848_SNP [dm3] 3L_12780748_SNP [dm6]	C	T	2.469e^-4	0.821	NON_SYNONYMOUS_CODING CG10969 UPSTREAM CG17666
3L	12773849	3L_12773849_SNP [dm3] 3L_12780749_SNP [dm6]	C	T	2.469e^-4	0.821	SYNONYMOUS_CODING CG10969 UPSTREAM CG17666
2R	12175591	2R_12175591_SNP [dm3] 2R_16288086_SNP [dm6]	C	T	2.469e^-4	0.821	NON_SYNONYMOUS_CODING CG30324 DOWNSTREAM CG30099 & 2 others	TF binding site mE1_TFBS_cad
2R	13532728	2R_13532728_SNP [dm3] 2R_17645223_SNP [dm6]	C	T	2.472e^-4	0.821	INTERGENIC
2L	12613487	2L_12613487_SNP [dm3] 2L_12613487_SNP [dm6]	C	G	2.478e^-4	0.821	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Kr mE1_TFBS_Trl
3R	10147033	3R_10147033_SNP [dm3] 3R_14321311_SNP [dm6]	A	T	2.486e^-4	0.823	UTR_3_PRIME Afti DOWNSTREAM Afti & 1 other
X	9474242	X_9474242_SNP [dm3] X_9580209_SNP [dm6]	C	A	2.491e^-4	0.823	UPSTREAM CG32699 INTERGENIC	TF binding site mE1_TFBS_cad
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	2.505e^-4	0.825	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	4941845	3L_4941845_SNP [dm3] 3L_4941845_SNP [dm6]	T	G	2.513e^-4	0.825	INTRON Con
2L	14240044	2L_14240044_SNP [dm3] 2L_14240044_SNP [dm6]	A	G	2.521e^-4	0.825	INTERGENIC
2L	8515600	2L_8515600_SNP [dm3] 2L_8515600_SNP [dm6]	T	C	2.521e^-4	0.825	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21675654	3R_21675654_SNP [dm3] 3R_25849932_SNP [dm6]	A	G	2.522e^-4	0.825	DOWNSTREAM CG14545 INTERGENIC
2R	7557879	2R_7557879_SNP [dm3] 2R_11670374_SNP [dm6]	C	T	2.529e^-4	0.825	INTRON Roc2 & 1 other
2L	4262489	2L_4262489_SNP [dm3] 2L_4262489_SNP [dm6]	T	A	2.531e^-4	0.825	INTERGENIC
3L	11838208	3L_11838208_SNP [dm3] 3L_11845108_SNP [dm6]	G	A	2.533e^-4	0.825	INTERGENIC
2R	2674694	2R_2674694_SNP [dm3] 2R_6787189_SNP [dm6]	C	T	2.549e^-4	0.827	INTRON Epac
X	15430863	X_15430863_SNP [dm3] X_15536830_SNP [dm6]	C	T	2.553e^-4	0.827	INTRON Ac13E
3R	25531576	3R_25531576_SNP [dm3] 3R_29705854_SNP [dm6]	A	G	2.565e^-4	0.827	INTERGENIC
3R	17000635	3R_17000635_SNP [dm3] 3R_21174913_SNP [dm6]	A	T	2.570e^-4	0.827	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10975535	3R_10975535_SNP [dm3] 3R_15149813_SNP [dm6]	T	C	2.574e^-4	0.827	UPSTREAM Gyc88E INTERGENIC
3L	5059325	3L_5059325_SNP [dm3] 3L_5059325_SNP [dm6]	C	T	2.580e^-4	0.827	INTRON Con
3R	9310383	3R_9310383_SNP [dm3] 3R_13484661_SNP [dm6]	G	A	2.586e^-4	0.827	INTERGENIC
3R	9621216	3R_9621216_SNP [dm3] 3R_13795494_SNP [dm6]	A	T	2.588e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8539953	X_8539953_SNP [dm3] X_8645920_SNP [dm6]	A	G	2.589e^-4	0.827	INTRON oc
3R	13970178	3R_13970178_SNP [dm3] 3R_18144456_SNP [dm6]	T	C	2.591e^-4	0.827	INTERGENIC
3L	16070235	3L_16070235_SNP [dm3] 3L_16077135_SNP [dm6]	C	A	2.595e^-4	0.827	INTRON Mbs
3R	23490741	3R_23490741_SNP [dm3] 3R_27665019_SNP [dm6]	C	G	2.604e^-4	0.827	NON_SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17069109	3R_17069109_SNP [dm3] 3R_21243387_SNP [dm6]	T	A	2.618e^-4	0.827	INTRON CG5892	TF binding site mE1_TFBS_inv
3L	16863014	3L_16863014_SNP [dm3] 3L_16869914_SNP [dm6]	G	A	2.632e^-4	0.827	INTRON Lmpt
X	16533876	X_16533876_SNP [dm3] X_16639843_SNP [dm6]	C	T	2.654e^-4	0.827	UTR_3_PRIME SmG DOWNSTREAM SmG & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	9569483	X_9569483_SNP [dm3] X_9675450_SNP [dm6]	A	C	2.656e^-4	0.827	INTRON nej	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	15269759	3L_15269759_SNP [dm3] 3L_15276659_SNP [dm6]	A	C	2.658e^-4	0.827	INTERGENIC
2L	13239069	2L_13239069_SNP [dm3] 2L_13239069_SNP [dm6]	G	A	2.663e^-4	0.827	SYNONYMOUS_CODING CG5867 UPSTREAM CG5945
3R	27659544	3R_27659544_SNP [dm3] 3R_31833822_SNP [dm6]	G	C	2.668e^-4	0.827	SYNONYMOUS_CODING RhoGAP100F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13590481	3R_13590481_SNP [dm3] 3R_17764759_SNP [dm6]	A	C	2.674e^-4	0.827	INTERGENIC
3L	3443920	3L_3443920_SNP [dm3] 3L_3443920_SNP [dm6]	C	T	2.676e^-4	0.827	INTRON eIF5B
2R	16185983	2R_16185983_SNP [dm3] 2R_20298478_SNP [dm6]	C	A	2.680e^-4	0.827	INTERGENIC
3R	23610854	3R_23610854_SNP [dm3] 3R_27785132_SNP [dm6]	A	T	2.680e^-4	0.827	INTRON CG34353
2R	17429042	2R_17429042_SNP [dm3] 2R_21541537_SNP [dm6]	C	T	2.681e^-4	0.827	UPSTREAM CG30283 INTRON Egfr	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9831293	3L_9831293_SNP [dm3] 3L_9838193_SNP [dm6]	G	T	2.689e^-4	0.827	SYNONYMOUS_CODING Cdk8 DOWNSTREAM RasGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10797536	3R_10797536_SNP [dm3] 3R_14971814_SNP [dm6]	T	A	2.692e^-4	0.827	INTERGENIC
2L	8509208	2L_8509208_SNP [dm3] 2L_8509208_SNP [dm6]	A	G	2.700e^-4	0.827	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
2R	6349744	2R_6349744_DEL [dm3] 2R_10462239_DEL [dm6]	AA	A	2.702e^-4	0.827	UTR_3_PRIME Galphao
3R	22322484	3R_22322484_SNP [dm3] 3R_26496762_SNP [dm6]	G	A	2.706e^-4	0.827	INTRON plum
3R	17069088	3R_17069088_SNP [dm3] 3R_21243366_SNP [dm6]	A	T	2.709e^-4	0.827	INTRON CG5892	TF binding site mE1_TFBS_inv
2L	5624249	2L_5624249_SNP [dm3] 2L_5624249_SNP [dm6]	G	C	2.711e^-4	0.827	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1200728	2L_1200728_SNP [dm3] 2L_1200728_SNP [dm6]	A	G	2.712e^-4	0.827	START_GAINED CG5011 UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2R	12778172	2R_12778172_SNP [dm3] 2R_16890667_SNP [dm6]	T	C	2.713e^-4	0.827	INTRON CG8910
2R	17449922	2R_17449922_SNP [dm3] 2R_21562417_SNP [dm6]	G	A	2.714e^-4	0.827	INTRON CG10440
3R	21653812	3R_21653812_SNP [dm3] 3R_25828090_SNP [dm6]	A	G	2.715e^-4	0.827	INTERGENIC
2R	13504561	2R_13504561_SNP [dm3] 2R_17617056_SNP [dm6]	C	T	2.717e^-4	0.827	UTR_3_PRIME CG44403 DOWNSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2313518	3R_2313518_SNP [dm3] 3R_6487796_SNP [dm6]	A	C	2.718e^-4	0.827	INTRON CG15186
X	22209627	X_22209627_DEL [dm3] X_22807791_DEL [dm6]	ACAGTC	A	2.719e^-4	0.827	UPSTREAM CR45464 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6508079	2R_6508079_INS [dm3] 2R_10620574_INS [dm6]	G	GGCGGAATTCTGCTCACTTC...	2.724e^-4	0.827	INTRON CG11883
3R	22395026	3R_22395026_SNP [dm3] 3R_26569304_SNP [dm6]	G	T	2.737e^-4	0.827	INTRON scrib	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19636262	2R_19636262_DEL [dm3] 2R_23748739_DEL [dm6]	GGCGTGG	G	2.747e^-4	0.827	DOWNSTREAM CG13560 & 1 other INTERGENIC
3R	12136326	3R_12136326_SNP [dm3] 3R_16310604_SNP [dm6]	C	T	2.750e^-4	0.827	UTR_3_PRIME Sulf1
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	2.750e^-4	0.827	DOWNSTREAM CG18109 INTERGENIC
2R	11221499	2R_11221499_SNP [dm3] 2R_15333994_SNP [dm6]	C	G	2.753e^-4	0.827	INTRON Hr51	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16556338	3L_16556338_SNP [dm3] 3L_16563238_SNP [dm6]	T	A	2.754e^-4	0.827	DOWNSTREAM Mipp1 INTERGENIC	TF binding site mE1_TFBS_bab1
X	4123081	X_4123081_DEL [dm3] X_4229048_DEL [dm6]	ACCTATGAAACAAATTTAAA...	A	2.760e^-4	0.827	INTERGENIC
X	20527070	X_20527070_SNP [dm3] X_20656043_SNP [dm6]	G	C	2.763e^-4	0.827	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18015004	2R_18015004_SNP [dm3] 2R_22127499_SNP [dm6]	A	G	2.766e^-4	0.827	UTR_5_PRIME GM130 UPSTREAM NtR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	11157444	2R_11157444_SNP [dm3] 2R_15269939_SNP [dm6]	C	T	2.766e^-4	0.827	INTRON Trpm
3R	9265772	3R_9265772_SNP [dm3] 3R_13440050_SNP [dm6]	G	A	2.771e^-4	0.827	UPSTREAM CR42756 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11910830	2L_11910830_SNP [dm3] 2L_11910830_SNP [dm6]	A	G	2.780e^-4	0.827	INTRON Pde1c
X	12013084	X_12013084_SNP [dm3] X_12119051_SNP [dm6]	A	T	2.786e^-4	0.827	INTRON Ten-a
3R	7438817	3R_7438817_SNP [dm3] 3R_11613095_SNP [dm6]	C	T	2.787e^-4	0.827	INTRON Jupiter	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	13239022	2L_13239022_SNP [dm3] 2L_13239022_SNP [dm6]	C	T	2.791e^-4	0.827	UPSTREAM CG5945 INTRON CG5867
2L	955923	2L_955923_SNP [dm3] 2L_955923_SNP [dm6]	G	T	2.794e^-4	0.827	INTRON CG4341
3R	18246625	3R_18246625_SNP [dm3] 3R_22420903_SNP [dm6]	G	T	2.796e^-4	0.827	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11168994	3L_11168994_SNP [dm3] 3L_11175894_SNP [dm6]	T	C	2.800e^-4	0.827	UTR_3_PRIME CG14142	TF binding site mE1_TFBS_cad
2R	6139999	2R_6139999_SNP [dm3] 2R_10252494_SNP [dm6]	T	A	2.824e^-4	0.827	UPSTREAM Syb INTRON CG12913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	16568440	2R_16568440_SNP [dm3] 2R_20680935_SNP [dm6]	T	A	2.842e^-4	0.827	INTERGENIC
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	2.849e^-4	0.827	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2R	13001518	2R_13001518_SNP [dm3] 2R_17114013_SNP [dm6]	A	G	2.850e^-4	0.827	SYNONYMOUS_CODING CG15611	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7333198	X_7333198_SNP [dm3] X_7439165_SNP [dm6]	T	A	2.855e^-4	0.827	INTERGENIC
2L	752508	2L_752508_DEL [dm3] 2L_752508_DEL [dm6]	CC	C	2.860e^-4	0.827	UPSTREAM GABA-B-R3 INTRON GABA-B-R3
3L	3445173	3L_3445173_SNP [dm3] 3L_3445173_SNP [dm6]	A	T	2.864e^-4	0.827	INTRON eIF5B
3R	15462511	3R_15462511_SNP [dm3] 3R_19636789_SNP [dm6]	A	G	2.870e^-4	0.827	DOWNSTREAM CG34138 INTRON subdued
2L	12755988	2L_12755988_SNP [dm3] 2L_12755988_SNP [dm6]	A	C	2.871e^-4	0.827	INTERGENIC
3R	22393664	3R_22393664_SNP [dm3] 3R_26567942_SNP [dm6]	G	A	2.873e^-4	0.827	UPSTREAM scrib INTRON scrib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16440539	3R_16440539_SNP [dm3] 3R_20614817_SNP [dm6]	G	T	2.873e^-4	0.827	SYNONYMOUS_CODING CG15923	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12373444	X_12373444_SNP [dm3] X_12479411_SNP [dm6]	G	A	2.874e^-4	0.827	DOWNSTREAM CG42258 INTERGENIC
3R	10909889	3R_10909889_SNP [dm3] 3R_15084167_SNP [dm6]	A	C	2.878e^-4	0.827	INTRON CG6966
3R	9241205	3R_9241205_SNP [dm3] 3R_13415483_SNP [dm6]	G	A	2.890e^-4	0.827	UPSTREAM yellow-e INTERGENIC
2R	14964246	2R_14964246_SNP [dm3] 2R_19076741_SNP [dm6]	A	T	2.890e^-4	0.827	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
2R	11302163	2R_11302163_SNP [dm3] 2R_15414658_SNP [dm6]	A	T	2.894e^-4	0.827	INTRON CG43729
3R	15462499	3R_15462499_SNP [dm3] 3R_19636777_SNP [dm6]	T	G	2.895e^-4	0.827	DOWNSTREAM CG34138 INTRON subdued
3R	9621145	3R_9621145_SNP [dm3] 3R_13795423_SNP [dm6]	T	C	2.901e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11863987	3R_11863987_SNP [dm3] 3R_16038265_SNP [dm6]	C	T	2.905e^-4	0.827	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9621282	3R_9621282_SNP [dm3] 3R_13795560_SNP [dm6]	T	G	2.916e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4137336	X_4137336_SNP [dm3] X_4243303_SNP [dm6]	G	T	2.918e^-4	0.827	UPSTREAM Femcoat DOWNSTREAM Muc4B INTERGENIC
2R	20240863	2R_20240863_SNP [dm3] 2R_24353340_SNP [dm6]	G	T	2.919e^-4	0.827	INTRON bs & 1 other
3R	9236233	3R_9236233_SNP [dm3] 3R_13410511_SNP [dm6]	G	T	2.926e^-4	0.827	INTRON yellow-e	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22868025	3R_22868025_SNP [dm3] 3R_27042303_SNP [dm6]	T	G	2.936e^-4	0.827	INTRON RYa-R
2L	3164243	2L_3164243_SNP [dm3] 2L_3164243_SNP [dm6]	T	A	2.941e^-4	0.827	DOWNSTREAM CR31953 INTRON Hydr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3164276	2L_3164276_INS [dm3] 2L_3164276_INS [dm6]	T	TATTT	2.941e^-4	0.827	DOWNSTREAM CR31953 INTRON Hydr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	17488728	X_17488728_SNP [dm3] X_17594695_SNP [dm6]	T	C	2.945e^-4	0.827	INTRON CG12991
3R	5095305	3R_5095305_SNP [dm3] 3R_9269583_SNP [dm6]	A	T	2.946e^-4	0.827	NON_SYNONYMOUS_CODING Vps16A
2L	13241928	2L_13241928_DEL [dm3] 2L_13241928_DEL [dm6]	CAATTGAC	C	2.952e^-4	0.827	DOWNSTREAM CG5945 EXON CR45330	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13227993	2L_13227993_SNP [dm3] 2L_13227993_SNP [dm6]	C	T	2.954e^-4	0.827	SYNONYMOUS_CODING CG16813	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24824142	3R_24824142_SNP [dm3] 3R_28998420_SNP [dm6]	A	G	2.955e^-4	0.827	INTRON wat
3R	8234219	3R_8234219_SNP [dm3] 3R_12408497_SNP [dm6]	A	T	2.962e^-4	0.827	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
X	7239452	X_7239452_SNP [dm3] X_7345419_SNP [dm6]	G	A	2.963e^-4	0.827	DOWNSTREAM CG15034 INTRON CR44357 & 1 other
2L	7363124	2L_7363124_SNP [dm3] 2L_7363124_SNP [dm6]	A	G	2.966e^-4	0.827	UPSTREAM Wnt10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	8219408	3R_8219408_SNP [dm3] 3R_12393686_SNP [dm6]	G	A	2.968e^-4	0.827	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402
2R	13766355	2R_13766355_SNP [dm3] 2R_17878850_SNP [dm6]	T	A	2.986e^-4	0.827	NON_SYNONYMOUS_CODING CG30325 INTRON Elk
X	5098901	X_5098901_SNP [dm3] X_5204868_SNP [dm6]	T	A	2.989e^-4	0.827	INTRON CG15465 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12759528	2L_12759528_SNP [dm3] 2L_12759528_SNP [dm6]	A	T	2.994e^-4	0.827	DOWNSTREAM CG15483 INTERGENIC
3R	20210009	3R_20210009_SNP [dm3] 3R_24384287_SNP [dm6]	T	A	2.998e^-4	0.827	INTRON CG17780
2L	12759440	2L_12759440_SNP [dm3] 2L_12759440_SNP [dm6]	A	T	3.003e^-4	0.827	DOWNSTREAM CG15483 INTERGENIC
3R	4038886	3R_4038886_SNP [dm3] 3R_8213164_SNP [dm6]	T	A	3.005e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cnc
2L	12565594	2L_12565594_SNP [dm3] 2L_12565594_SNP [dm6]	T	C	3.006e^-4	0.827	INTERGENIC
2L	8509953	2L_8509953_SNP [dm3] 2L_8509953_SNP [dm6]	G	A	3.009e^-4	0.827	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9666689	2R_9666689_SNP [dm3] 2R_13779184_SNP [dm6]	A	G	3.014e^-4	0.827	SYNONYMOUS_CODING S-Lap7 INTRON Cpr50Ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20027527	2L_20027527_DEL [dm3] 2L_20027527_DEL [dm6]	AA	A	3.015e^-4	0.827	UPSTREAM sNPF INTERGENIC	TF binding site mE1_TFBS_cnc
3L	10498927	3L_10498927_SNP [dm3] 3L_10505827_SNP [dm6]	T	G	3.016e^-4	0.827	INTRON A2bp1
3R	17415137	3R_17415137_SNP [dm3] 3R_21589415_SNP [dm6]	A	G	3.017e^-4	0.827	INTRON InR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	14225067	2L_14225067_SNP [dm3] 2L_14225067_SNP [dm6]	A	G	3.028e^-4	0.827	INTRON Dyrk2	TF binding site mE1_TFBS_hkb
3R	10960865	3R_10960865_SNP [dm3] 3R_15135143_SNP [dm6]	A	G	3.036e^-4	0.827	UTR_3_PRIME CG6912	TF binding site BDTNP1_TFBS_dl
X	11291815	X_11291815_SNP [dm3] X_11397782_SNP [dm6]	G	A	3.045e^-4	0.827	INTRON dlg1	TF binding site BDTNP1_TFBS_dl
3L	3444082	3L_3444082_SNP [dm3] 3L_3444082_SNP [dm6]	A	G	3.049e^-4	0.827	INTRON eIF5B
X	7667852	X_7667852_SNP [dm3] X_7773819_SNP [dm6]	A	C	3.050e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18158141	3L_18158141_SNP [dm3] 3L_18165041_SNP [dm6]	A	T	3.052e^-4	0.827	INTERGENIC
3L	16010431	3L_16010431_SNP [dm3] 3L_16017331_SNP [dm6]	T	A	3.086e^-4	0.827	EXON CR43950	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15182075	2L_15182075_SNP [dm3] 2L_15182075_SNP [dm6]	T	C	3.086e^-4	0.827	INTRON CG4168
3R	18292131	3R_18292131_SNP [dm3] 3R_22466409_SNP [dm6]	A	T	3.091e^-4	0.827	NON_SYNONYMOUS_CODING Pebp1 DOWNSTREAM CG5377 & 1 other	TF binding site mE1_TFBS_cad
X	16534395	X_16534395_SNP [dm3] X_16640362_SNP [dm6]	T	C	3.101e^-4	0.827	UTR_5_PRIME SmG UPSTREAM mthl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	16533579	X_16533579_SNP [dm3] X_16639546_SNP [dm6]	G	T	3.107e^-4	0.827	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	13281862	3L_13281862_SNP [dm3] 3L_13288762_SNP [dm6]	A	T	3.108e^-4	0.827	INTERGENIC
2R	13927539	2R_13927539_SNP [dm3] 2R_18040034_SNP [dm6]	A	T	3.111e^-4	0.827	INTERGENIC
2R	20607369	2R_20607369_DEL [dm3] 2R_24719846_DEL [dm6]	TACGCCCCTCGCTAGCACGC...	CA	3.116e^-4	0.827	INTRON Mid1	TF binding site BDTNP1_TFBS_twi
3R	7303950	3R_7303950_SNP [dm3] 3R_11478228_SNP [dm6]	G	A	3.117e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9295369	3R_9295369_SNP [dm3] 3R_13469647_SNP [dm6]	G	A	3.118e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16283805	3R_16283805_SNP [dm3] 3R_20458083_SNP [dm6]	T	C	3.119e^-4	0.827	INTRON Gfrl
2L	4402965	2L_4402965_SNP [dm3] 2L_4402965_SNP [dm6]	T	C	3.119e^-4	0.827	SYNONYMOUS_CODING CG33003 UPSTREAM Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_h
3L	9841568	3L_9841568_SNP [dm3] 3L_9848468_SNP [dm6]	G	A	3.121e^-4	0.827	INTRON RasGAP1
3R	13136598	3R_13136598_SNP [dm3] 3R_17310876_SNP [dm6]	T	A	3.123e^-4	0.827	INTERGENIC
3R	10599241	3R_10599241_SNP [dm3] 3R_14773519_SNP [dm6]	T	C	3.125e^-4	0.827	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2918251	X_2918251_SNP [dm3] X_3024218_SNP [dm6]	A	T	3.149e^-4	0.827	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16909355	3R_16909355_SNP [dm3] 3R_21083633_SNP [dm6]	C	T	3.151e^-4	0.827	UTR_3_PRIME RhoGAP93B
3L	11270290	3L_11270290_SNP [dm3] 3L_11277190_SNP [dm6]	G	T	3.152e^-4	0.827	INTERGENIC
3R	17908167	3R_17908167_SNP [dm3] 3R_22082445_SNP [dm6]	G	C	3.152e^-4	0.827	INTRON CG13408
3L	16744925	3L_16744925_SNP [dm3] 3L_16751825_SNP [dm6]	G	A	3.161e^-4	0.827	INTERGENIC
2L	13955605	2L_13955605_SNP [dm3] 2L_13955605_SNP [dm6]	T	C	3.162e^-4	0.827	UTR_3_PRIME Ance-3
3R	5700061	3R_5700061_SNP [dm3] 3R_9874339_SNP [dm6]	T	C	3.163e^-4	0.827	UPSTREAM Glut4EF INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	9163891	3R_9163891_DEL [dm3] 3R_13338169_DEL [dm6]	TATTATAAAAT...	T	3.164e^-4	0.827	UPSTREAM PK2-R1 INTERGENIC
X	9476782	X_9476782_SNP [dm3] X_9582749_SNP [dm6]	C	T	3.166e^-4	0.827	UPSTREAM CR45540 INTERGENIC
2L	15199359	2L_15199359_SNP [dm3] 2L_15199359_SNP [dm6]	C	G	3.169e^-4	0.827	INTRON CG4168
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	3.177e^-4	0.827	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6988000	2R_6988000_SNP [dm3] 2R_11100495_SNP [dm6]	G	A	3.179e^-4	0.827	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7392220	3R_7392220_SNP [dm3] 3R_11566498_SNP [dm6]	C	A	3.182e^-4	0.827	INTRON fabp & 1 other	TF binding site mE1_TFBS_Trl
X	19124041	X_19124041_SNP [dm3] X_19230008_SNP [dm6]	G	A	3.190e^-4	0.827	INTRON CG7884
3L	4312092	3L_4312092_SNP [dm3] 3L_4312092_SNP [dm6]	G	A	3.201e^-4	0.827	INTERGENIC
2L	12280690	2L_12280690_SNP [dm3] 2L_12280690_SNP [dm6]	A	C	3.201e^-4	0.827	INTRON aret	TF binding site mE1_TFBS_sbb
3R	26898189	3R_26898189_SNP [dm3] 3R_31072467_SNP [dm6]	T	C	3.217e^-4	0.827	INTRON Sox100B
3R	14960441	3R_14960441_SNP [dm3] 3R_19134719_SNP [dm6]	T	C	3.220e^-4	0.827	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2R	17682926	2R_17682926_SNP [dm3] 2R_21795421_SNP [dm6]	G	A	3.224e^-4	0.827	UPSTREAM CG34204 INTERGENIC
3R	18291101	3R_18291101_SNP [dm3] 3R_22465379_SNP [dm6]	C	A	3.225e^-4	0.827	SYNONYMOUS_CODING CG7054 UPSTREAM Pebp1 DOWNSTREAM AP-2mu	TF binding site mE1_TFBS_cad
3L	4735580	3L_4735580_SNP [dm3] 3L_4735580_SNP [dm6]	C	T	3.226e^-4	0.827	INTRON RhoGEF64C
3R	16909523	3R_16909523_SNP [dm3] 3R_21083801_SNP [dm6]	G	A	3.234e^-4	0.827	UTR_3_PRIME RhoGAP93B
3R	20210013	3R_20210013_SNP [dm3] 3R_24384291_SNP [dm6]	A	T	3.234e^-4	0.827	INTRON CG17780
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	3.235e^-4	0.827	INTRON Octbeta3R
2R	19810583	2R_19810583_SNP [dm3] 2R_23923060_SNP [dm6]	C	T	3.243e^-4	0.827	INTRON kcc	TF binding site mE1_TFBS_cad
2L	12113120	2L_12113120_SNP [dm3] 2L_12113120_SNP [dm6]	C	T	3.245e^-4	0.827	DOWNSTREAM Phae2 INTERGENIC
3L	5827401	3L_5827401_SNP [dm3] 3L_5834301_SNP [dm6]	G	A	3.246e^-4	0.827	INTRON vn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	23612835	3R_23612835_SNP [dm3] 3R_27787113_SNP [dm6]	T	A	3.254e^-4	0.827	INTRON CG34353
3L	2812104	3L_2812104_SNP [dm3] 3L_2812104_SNP [dm6]	A	T	3.262e^-4	0.827	INTRON CG43444
2L	13239023	2L_13239023_SNP [dm3] 2L_13239023_SNP [dm6]	G	A	3.263e^-4	0.827	UPSTREAM CG5945 INTRON CG5867
3L	665175	3L_665175_INS [dm3] 3L_665175_INS [dm6]	G	GATCG	3.273e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_sens
2L	12280816	2L_12280816_SNP [dm3] 2L_12280816_SNP [dm6]	A	G	3.279e^-4	0.827	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13247127	2L_13247127_SNP [dm3] 2L_13247127_SNP [dm6]	C	G	3.281e^-4	0.827	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	3.287e^-4	0.827	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	5099666	X_5099666_SNP [dm3] X_5205633_SNP [dm6]	T	A	3.290e^-4	0.827	INTRON CG15465 & 1 other
2L	14003520	2L_14003520_SNP [dm3] 2L_14003520_SNP [dm6]	A	G	3.290e^-4	0.827	INTERGENIC
2R	19453318	2R_19453318_DEL [dm3] 2R_23565795_DEL [dm6]	CT	C	3.290e^-4	0.827	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5671615	X_5671615_SNP [dm3] X_5777582_SNP [dm6]	G	A	3.298e^-4	0.827	SYNONYMOUS_CODING CG3108 UPSTREAM CG42264 INTRON CG42699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16298199	3L_16298199_DEL [dm3] 3L_16305099_DEL [dm6]	TTAGTAT	T	3.304e^-4	0.827	DOWNSTREAM CG13043 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	15982400	X_15982400_SNP [dm3] X_16088367_SNP [dm6]	T	A	3.311e^-4	0.827	UPSTREAM Tob INTRON Tob	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_zfh1
2L	10666558	2L_10666558_SNP [dm3] 2L_10666558_SNP [dm6]	A	T	3.314e^-4	0.827	INTRON CG31871
X	20534322	X_20534322_SNP [dm3] X_20663295_SNP [dm6]	A	G	3.317e^-4	0.827	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	12184134	2R_12184134_SNP [dm3] 2R_16296629_SNP [dm6]	T	C	3.320e^-4	0.827	SYNONYMOUS_CODING Atg9 DOWNSTREAM CG43265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19517818	3R_19517818_SNP [dm3] 3R_23692096_SNP [dm6]	T	C	3.334e^-4	0.827	NON_SYNONYMOUS_CODING CG10254
3R	13157408	3R_13157408_SNP [dm3] 3R_17331686_SNP [dm6]	G	T	3.340e^-4	0.827	INTRON beat-IIa
3L	6957914	3L_6957914_SNP [dm3] 3L_6964814_SNP [dm6]	C	G	3.344e^-4	0.827	UPSTREAM sgl DOWNSTREAM CG10064 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4889602	3L_4889602_INS [dm3] 3L_4889602_INS [dm6]	G	GG	3.354e^-4	0.827	INTRON CG17150
3L	15270541	3L_15270541_SNP [dm3] 3L_15277441_SNP [dm6]	C	T	3.370e^-4	0.827	INTERGENIC
X	15104911	X_15104911_SNP [dm3] X_15210878_SNP [dm6]	T	C	3.373e^-4	0.827	SYNONYMOUS_CODING CG5662
3R	10147025	3R_10147025_SNP [dm3] 3R_14321303_SNP [dm6]	G	A	3.376e^-4	0.827	UTR_3_PRIME Afti DOWNSTREAM Afti & 1 other
3R	11862726	3R_11862726_SNP [dm3] 3R_16037004_SNP [dm6]	C	T	3.395e^-4	0.827	INTRON pnr	TF binding site BDTNP1_TFBS_dl
3L	12317303	3L_12317303_SNP [dm3] 3L_12324203_SNP [dm6]	A	T	3.405e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24824152	3R_24824152_SNP [dm3] 3R_28998430_SNP [dm6]	G	C	3.409e^-4	0.827	INTRON wat
3L	16746853	3L_16746853_INS [dm3] 3L_16753753_INS [dm6]	T	TTCTGCCT	3.409e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_cad
X	20002704	X_20002704_SNP [dm3] X_20108671_SNP [dm6]	T	C	3.410e^-4	0.827	INTERGENIC
3R	8388432	3R_8388432_SNP [dm3] 3R_12562710_SNP [dm6]	C	A	3.411e^-4	0.827	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
3L	6490554	3L_6490554_SNP [dm3] 3L_6497454_SNP [dm6]	T	C	3.412e^-4	0.827	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	7337157	3R_7337157_SNP [dm3] 3R_11511435_SNP [dm6]	C	G	3.413e^-4	0.827	INTERGENIC
3R	15559975	3R_15559975_SNP [dm3] 3R_19734253_SNP [dm6]	A	T	3.422e^-4	0.827	INTRON GluClalpha
3R	11858250	3R_11858250_DEL [dm3] 3R_16032528_DEL [dm6]	ACTGGGTACCCTTCG...	A	3.451e^-4	0.827	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	7717137	3R_7717137_INS [dm3] 3R_11891415_INS [dm6]	A	AA	3.451e^-4	0.827	SPLICE_SITE_REGION CG31368 DOWNSTREAM CG6971 INTRON CG31368	TF binding site mE1_TFBS_sens
3R	7444715	3R_7444715_SNP [dm3] 3R_11618993_SNP [dm6]	G	A	3.451e^-4	0.827	INTRON Jupiter	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22329056	X_22329056_INS [dm3] X_22927220_INS [dm6]	A	ATGAT	3.452e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22322015	3R_22322015_SNP [dm3] 3R_26496293_SNP [dm6]	A	G	3.452e^-4	0.827	INTRON plum
2L	10666571	2L_10666571_SNP [dm3] 2L_10666571_SNP [dm6]	C	T	3.453e^-4	0.827	INTRON CG31871
2R	7767097	2R_7767097_SNP [dm3] 2R_11879592_SNP [dm6]	A	G	3.454e^-4	0.827	SYNONYMOUS_CODING CG13185
3R	8372946	3R_8372946_SNP [dm3] 3R_12547224_SNP [dm6]	G	C	3.456e^-4	0.827	INTRON Octbeta3R
3L	16755394	3L_16755394_SNP [dm3] 3L_16762294_SNP [dm6]	T	G	3.461e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	6363060	3L_6363060_SNP [dm3] 3L_6369960_SNP [dm6]	G	T	3.466e^-4	0.827	DOWNSTREAM CR45419 INTERGENIC
3R	24260841	3R_24260841_SNP [dm3] 3R_28435119_SNP [dm6]	G	C	3.467e^-4	0.827	INTRON beat-VI
2L	12759497	2L_12759497_SNP [dm3] 2L_12759497_SNP [dm6]	G	T	3.471e^-4	0.827	DOWNSTREAM CG15483 INTERGENIC
X	9653050	X_9653050_SNP [dm3] X_9759017_SNP [dm6]	T	G	3.475e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
X	9653108	X_9653108_INS [dm3] X_9759075_INS [dm6]	C	GA	3.475e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
X	9653111	X_9653111_SNP [dm3] X_9759078_SNP [dm6]	A	G	3.475e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3R	17908165	3R_17908165_INS [dm3] 3R_22082443_INS [dm6]	A	AAAAGGTT	3.475e^-4	0.827	INTRON CG13408
3R	3550136	3R_3550136_SNP [dm3] 3R_7724414_SNP [dm6]	T	A	3.486e^-4	0.827	UTR_3_PRIME CG2616	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6960114	3L_6960114_SNP [dm3] 3L_6967014_SNP [dm6]	T	G	3.488e^-4	0.827	SYNONYMOUS_CODING CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4735932	3L_4735932_SNP [dm3] 3L_4735932_SNP [dm6]	A	T	3.490e^-4	0.827	INTRON RhoGEF64C
3R	9230760	3R_9230760_SNP [dm3] 3R_13405038_SNP [dm6]	A	G	3.490e^-4	0.827	UPSTREAM yellow-e3 DOWNSTREAM yellow-e2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6080945	2R_6080945_SNP [dm3] 2R_10193440_SNP [dm6]	C	T	3.494e^-4	0.827	INTERGENIC
2L	12759520	2L_12759520_SNP [dm3] 2L_12759520_SNP [dm6]	A	T	3.498e^-4	0.827	DOWNSTREAM CG15483 INTERGENIC
3L	4647129	3L_4647129_SNP [dm3] 3L_4647129_SNP [dm6]	C	T	3.503e^-4	0.827	INTRON axo
2L	2096715	2L_2096715_DEL [dm3] 2L_2096715_DEL [dm6]	AACTGAA	A	3.506e^-4	0.827	INTRON dpr3
X	13930828	X_13930828_SNP [dm3] X_14036795_SNP [dm6]	A	C	3.506e^-4	0.827	INTERGENIC
3L	3438746	3L_3438746_SNP [dm3] 3L_3438746_SNP [dm6]	A	T	3.507e^-4	0.827	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4116036	3L_4116036_SNP [dm3] 3L_4116036_SNP [dm6]	A	T	3.515e^-4	0.827	UPSTREAM Chd64 INTRON Chd64
2R	8873352	2R_8873352_INS [dm3] 2R_12985847_INS [dm6]	A	ACATA	3.524e^-4	0.827	EXON CR44339	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17782648	2R_17782648_SNP [dm3] 2R_21895143_SNP [dm6]	A	G	3.527e^-4	0.827	INTRON Fili
2L	14225097	2L_14225097_SNP [dm3] 2L_14225097_SNP [dm6]	T	A	3.537e^-4	0.827	INTRON Dyrk2	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	12056177	3L_12056177_DEL [dm3] 3L_12063077_DEL [dm6]	GG	G	3.542e^-4	0.827	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14680579	3R_14680579_SNP [dm3] 3R_18854857_SNP [dm6]	T	C	3.545e^-4	0.827	INTERGENIC
2L	15781562	2L_15781562_SNP [dm3] 2L_15781562_SNP [dm6]	C	G	3.549e^-4	0.827	INTERGENIC
X	5540997	X_5540997_SNP [dm3] X_5646964_SNP [dm6]	A	C	3.551e^-4	0.827	INTRON CG42492	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10998820	2R_10998820_SNP [dm3] 2R_15111315_SNP [dm6]	A	G	3.558e^-4	0.827	INTERGENIC
3L	16757680	3L_16757680_SNP [dm3] 3L_16764580_SNP [dm6]	G	A	3.559e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11026412	3L_11026412_SNP [dm3] 3L_11033312_SNP [dm6]	A	G	3.561e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26135018	3R_26135018_SNP [dm3] 3R_30309296_SNP [dm6]	G	A	3.562e^-4	0.827	INTRON hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3028667	2L_3028667_SNP [dm3] 2L_3028667_SNP [dm6]	T	G	3.565e^-4	0.827	NON_SYNONYMOUS_CODING CG3605 UPSTREAM CG17219	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	2979625	3L_2979625_SNP [dm3] 3L_2979625_SNP [dm6]	G	C	3.566e^-4	0.827	INTERGENIC
3L	18158179	3L_18158179_SNP [dm3] 3L_18165079_SNP [dm6]	T	C	3.571e^-4	0.827	INTERGENIC
2L	13228700	2L_13228700_SNP [dm3] 2L_13228700_SNP [dm6]	A	G	3.577e^-4	0.827	DOWNSTREAM CG16813 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13228702	2L_13228702_SNP [dm3] 2L_13228702_SNP [dm6]	A	G	3.577e^-4	0.827	DOWNSTREAM CG16813 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12759487	2L_12759487_SNP [dm3] 2L_12759487_SNP [dm6]	G	A	3.586e^-4	0.827	DOWNSTREAM CG15483 INTERGENIC
3L	16755397	3L_16755397_SNP [dm3] 3L_16762297_SNP [dm6]	C	A	3.590e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	27522984	3R_27522984_DEL [dm3] 3R_31697262_DEL [dm6]	TCCTGG	T	3.602e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	14228146	2R_14228146_SNP [dm3] 2R_18340641_SNP [dm6]	G	A	3.609e^-4	0.827	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15563747	2R_15563747_SNP [dm3] 2R_19676242_SNP [dm6]	A	G	3.609e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9298307	3L_9298307_SNP [dm3] 3L_9305207_SNP [dm6]	G	T	3.625e^-4	0.827	INTERGENIC
2L	2855326	2L_2855326_SNP [dm3] 2L_2855326_SNP [dm6]	C	A	3.629e^-4	0.827	UPSTREAM RpS21 & 1 other INTRON CG3104	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	6497299	X_6497299_SNP [dm3] X_6603266_SNP [dm6]	C	T	3.629e^-4	0.827	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	7387272	3R_7387272_SNP [dm3] 3R_11561550_SNP [dm6]	A	G	3.636e^-4	0.827	INTRON sea & 1 other
3R	11862663	3R_11862663_SNP [dm3] 3R_16036941_SNP [dm6]	A	G	3.637e^-4	0.827	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2993393	3L_2993393_SNP [dm3] 3L_2993393_SNP [dm6]	T	A	3.637e^-4	0.827	INTERGENIC
X	12291408	X_12291408_SNP [dm3] X_12397375_SNP [dm6]	T	A	3.639e^-4	0.827	INTERGENIC
2L	7183028	2L_7183028_SNP [dm3] 2L_7183028_SNP [dm6]	T	A	3.643e^-4	0.827	INTRON CG4495	TF binding site BDTNP1_TFBS_twi
3L	21032478	3L_21032478_SNP [dm3] 3L_21039378_SNP [dm6]	C	T	3.655e^-4	0.827	INTRON siz
3R	12779934	3R_12779934_SNP [dm3] 3R_16954212_SNP [dm6]	A	T	3.658e^-4	0.827	INTRON Abd-B	TF binding site mE1_TFBS_cad
3R	26999988	3R_26999988_SNP [dm3] 3R_31174266_SNP [dm6]	A	G	3.660e^-4	0.827	INTRON Gycbeta100B
X	3319655	X_3319655_SNP [dm3] X_3425622_SNP [dm6]	G	T	3.662e^-4	0.827	INTRON CR44999 & 1 other
2R	11851404	2R_11851404_SNP [dm3] 2R_15963899_SNP [dm6]	G	C	3.665e^-4	0.827	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2R	17690503	2R_17690503_SNP [dm3] 2R_21802998_SNP [dm6]	A	T	3.669e^-4	0.827	UPSTREAM CR9284 INTERGENIC
2R	6983299	2R_6983299_SNP [dm3] 2R_11095794_SNP [dm6]	C	T	3.670e^-4	0.827	INTRON luna	TF binding site BDTNP1_TFBS_twi
3L	16873394	3L_16873394_SNP [dm3] 3L_16880294_SNP [dm6]	A	G	3.680e^-4	0.827	DOWNSTREAM CG32170 INTRON Lmpt
2R	17676867	2R_17676867_SNP [dm3] 2R_21789362_SNP [dm6]	C	A	3.683e^-4	0.827	DOWNSTREAM lox2 INTERGENIC
3R	24404132	3R_24404132_SNP [dm3] 3R_28578410_SNP [dm6]	G	T	3.687e^-4	0.827	INTERGENIC	regulatory region REDfly_CRMs
2R	17682915	2R_17682915_DEL [dm3] 2R_21795410_DEL [dm6]	TTTATATT	T	3.687e^-4	0.827	UPSTREAM CG34204 INTERGENIC
2R	20608069	2R_20608069_SNP [dm3] 2R_24720546_SNP [dm6]	T	G	3.688e^-4	0.827	INTRON Mid1	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	23190536	3R_23190536_SNP [dm3] 3R_27364814_SNP [dm6]	T	C	3.691e^-4	0.827	INTRON CG42534
3R	24878215	3R_24878215_SNP [dm3] 3R_29052493_SNP [dm6]	C	A	3.701e^-4	0.827	UPSTREAM CG11842 DOWNSTREAM CG11841 INTERGENIC
2L	20135821	2L_20135821_SNP [dm3] 2L_20135821_SNP [dm6]	G	C	3.706e^-4	0.827	UPSTREAM CG10651 INTERGENIC
2L	11910722	2L_11910722_SNP [dm3] 2L_11910722_SNP [dm6]	A	C	3.710e^-4	0.827	INTRON Pde1c
2L	13249600	2L_13249600_SNP [dm3] 2L_13249600_SNP [dm6]	T	C	3.716e^-4	0.827	SPLICE_SITE_REGION CG16820 INTRON CG16820
X	16534524	X_16534524_SNP [dm3] X_16640491_SNP [dm6]	C	T	3.722e^-4	0.827	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	12759515	2L_12759515_SNP [dm3] 2L_12759515_SNP [dm6]	G	A	3.724e^-4	0.827	DOWNSTREAM CG15483 INTERGENIC
X	10772035	X_10772035_SNP [dm3] X_10878002_SNP [dm6]	T	C	3.724e^-4	0.827	UPSTREAM CG1637 DOWNSTREAM Ork1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	5055324	3L_5055324_SNP [dm3] 3L_5055324_SNP [dm6]	T	A	3.726e^-4	0.827	INTRON Con
3L	2947334	3L_2947334_SNP [dm3] 3L_2947334_SNP [dm6]	C	T	3.740e^-4	0.827	DOWNSTREAM Shab INTRON Shab
3R	1049648	3R_1049648_SNP [dm3] 3R_5223926_SNP [dm6]	A	C	3.740e^-4	0.827	UPSTREAM CG14664 & 1 other INTERGENIC
2L	4525812	2L_4525812_SNP [dm3] 2L_4525812_SNP [dm6]	A	G	3.750e^-4	0.827	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad
2L	13247135	2L_13247135_SNP [dm3] 2L_13247135_SNP [dm6]	T	A	3.754e^-4	0.827	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14961449	2R_14961449_SNP [dm3] 2R_19073944_SNP [dm6]	C	T	3.756e^-4	0.827	INTRON 5-HT1A
2L	13239890	2L_13239890_SNP [dm3] 2L_13239890_SNP [dm6]	G	A	3.759e^-4	0.827	UPSTREAM CG5945 DOWNSTREAM CG5867 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19472502	3L_19472502_SNP [dm3] 3L_19479402_SNP [dm6]	T	C	3.762e^-4	0.827	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
X	1950260	X_1950260_SNP [dm3] X_2056227_SNP [dm6]	C	T	3.769e^-4	0.827	NON_SYNONYMOUS_CODING Sik2 DOWNSTREAM CG4313 EXON CR44896	TF binding site mE1_TFBS_chinmo
3R	20210011	3R_20210011_SNP [dm3] 3R_24384289_SNP [dm6]	T	A	3.778e^-4	0.827	INTRON CG17780
3L	13824550	3L_13824550_SNP [dm3] 3L_13831450_SNP [dm6]	A	T	3.783e^-4	0.827	INTERGENIC
3R	10844039	3R_10844039_SNP [dm3] 3R_15018317_SNP [dm6]	A	G	3.784e^-4	0.827	INTERGENIC
3L	21449806	3L_21449806_SNP [dm3] 3L_21456706_SNP [dm6]	G	A	3.787e^-4	0.827	INTERGENIC
X	4635998	X_4635998_SNP [dm3] X_4741965_SNP [dm6]	C	A	3.792e^-4	0.827	INTERGENIC
X	6538864	X_6538864_SNP [dm3] X_6644831_SNP [dm6]	G	A	3.796e^-4	0.827	SYNONYMOUS_CODING pigs
3L	5058997	3L_5058997_SNP [dm3] 3L_5058997_SNP [dm6]	G	A	3.802e^-4	0.827	INTRON Con
2R	17429287	2R_17429287_INS [dm3] 2R_21541782_INS [dm6]	A	AAATAT	3.810e^-4	0.827	INTRON Egfr	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18536340	2R_18536340_SNP [dm3] 2R_22648835_SNP [dm6]	G	A	3.814e^-4	0.827	UPSTREAM CG34445 DOWNSTREAM CG3746 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12815304	3L_12815304_SNP [dm3] 3L_12822204_SNP [dm6]	A	C	3.815e^-4	0.827	INTRON CG42588
3L	9210895	3L_9210895_SNP [dm3] 3L_9217795_SNP [dm6]	C	T	3.816e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26896455	3R_26896455_SNP [dm3] 3R_31070733_SNP [dm6]	C	G	3.819e^-4	0.827	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3935409	X_3935409_SNP [dm3] X_4041376_SNP [dm6]	C	T	3.828e^-4	0.827	INTERGENIC
2L	18333219	2L_18333219_SNP [dm3] 2L_18333219_SNP [dm6]	A	T	3.830e^-4	0.827	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3307980	2L_3307980_SNP [dm3] 2L_3307980_SNP [dm6]	G	A	3.834e^-4	0.827	INTRON CG3277
3L	9831907	3L_9831907_SNP [dm3] 3L_9838807_SNP [dm6]	G	A	3.841e^-4	0.827	UPSTREAM Cdk8 DOWNSTREAM RasGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3L	13906367	3L_13906367_SNP [dm3] 3L_13913267_SNP [dm6]	G	A	3.841e^-4	0.827	INTRON Rgl
3R	18246640	3R_18246640_SNP [dm3] 3R_22420918_SNP [dm6]	A	C	3.841e^-4	0.827	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12280729	2L_12280729_SNP [dm3] 2L_12280729_SNP [dm6]	G	A	3.841e^-4	0.827	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10114290	3L_10114290_SNP [dm3] 3L_10121190_SNP [dm6]	T	A	3.844e^-4	0.827	INTRON dpr6
3R	18295017	3R_18295017_SNP [dm3] 3R_22469295_SNP [dm6]	A	G	3.846e^-4	0.827	UTR_5_PRIME Nrx-1 UPSTREAM Nrx-1 INTRON Nrx-1
3R	18295020	3R_18295020_SNP [dm3] 3R_22469298_SNP [dm6]	C	T	3.846e^-4	0.827	START_GAINED Nrx-1 UTR_5_PRIME Nrx-1 UPSTREAM Nrx-1 INTRON Nrx-1
2R	8876560	2R_8876560_SNP [dm3] 2R_12989055_SNP [dm6]	A	T	3.848e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16603407	3R_16603407_SNP [dm3] 3R_20777685_SNP [dm6]	T	G	3.853e^-4	0.827	INTRON Syp
2L	3550220	2L_3550220_INS [dm3] 2L_3550220_INS [dm6]	T	TATAT	3.862e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10393466	3R_10393466_SNP [dm3] 3R_14567744_SNP [dm6]	C	A	3.864e^-4	0.827	UTR_3_PRIME CG8066 UPSTREAM CG31313 DOWNSTREAM CG8066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	12856352	2R_12856352_SNP [dm3] 2R_16968847_SNP [dm6]	C	T	3.872e^-4	0.827	UPSTREAM CR44377 DOWNSTREAM tRNA:G3:53E INTERGENIC
X	15982451	X_15982451_SNP [dm3] X_16088418_SNP [dm6]	G	A	3.875e^-4	0.827	INTRON Tob	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_zfh1
3L	3043384	3L_3043384_SNP [dm3] 3L_3043384_SNP [dm6]	G	A	3.879e^-4	0.827	SYNONYMOUS_CODING Jafrac2 DOWNSTREAM scramb2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4018338	3L_4018338_SNP [dm3] 3L_4018338_SNP [dm6]	C	T	3.884e^-4	0.827	UPSTREAM fd64A INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14203473	2L_14203473_SNP [dm3] 2L_14203473_SNP [dm6]	A	T	3.885e^-4	0.827	INTRON Dyrk2
3R	7776140	3R_7776140_DEL [dm3] 3R_11950418_DEL [dm6]	TCCTT	T	3.899e^-4	0.827	SPLICE_SITE_REGION CG31211 INTRON CG31211	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14703879	X_14703879_SNP [dm3] X_14809846_SNP [dm6]	C	T	3.906e^-4	0.827	INTRON rut
3R	23883860	3R_23883860_SNP [dm3] 3R_28058138_SNP [dm6]	G	A	3.911e^-4	0.827	INTRON CG34362
3L	16070024	3L_16070024_SNP [dm3] 3L_16076924_SNP [dm6]	C	A	3.916e^-4	0.827	INTRON Mbs
X	4071328	X_4071328_DEL [dm3] X_4177295_DEL [dm6]	TT	T	3.917e^-4	0.827	INTRON Fas2	TF binding site mE1_TFBS_HSA
3R	24762418	3R_24762418_DEL [dm3] 3R_28936696_DEL [dm6]	TTATTAAATTATTACTAT...	C	3.922e^-4	0.827	INTRON CG14521
X	7333389	X_7333389_SNP [dm3] X_7439356_SNP [dm6]	G	A	3.923e^-4	0.827	INTERGENIC
2L	13434721	2L_13434721_SNP [dm3] 2L_13434721_SNP [dm6]	T	C	3.925e^-4	0.827	UPSTREAM Tehao INTRON CG42784	TF binding site mE1_TFBS_cad
X	21137436	X_21137436_SNP [dm3] X_21266409_SNP [dm6]	C	T	3.932e^-4	0.827	INTRON CG32521	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16533783	X_16533783_SNP [dm3] X_16639750_SNP [dm6]	T	C	3.937e^-4	0.827	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8289146	3R_8289146_SNP [dm3] 3R_12463424_SNP [dm6]	C	A	3.937e^-4	0.827	NON_SYNONYMOUS_CODING CG5608	TF binding site mE1_TFBS_inv
2R	6989139	2R_6989139_SNP [dm3] 2R_11101634_SNP [dm6]	C	T	3.944e^-4	0.827	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18603674	3L_18603674_SNP [dm3] 3L_18610574_SNP [dm6]	T	G	3.947e^-4	0.827	NON_SYNONYMOUS_CODING CG32201 INTRON CG4174 & 1 other
2R	18536318	2R_18536318_SNP [dm3] 2R_22648813_SNP [dm6]	C	G	3.950e^-4	0.827	UPSTREAM CG34445 DOWNSTREAM CG3746 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	383243	3L_383243_SNP [dm3] 3L_383243_SNP [dm6]	C	G	3.958e^-4	0.827	INTRON trh
3R	7745307	3R_7745307_SNP [dm3] 3R_11919585_SNP [dm6]	T	C	3.961e^-4	0.827	INTRON Cad87A
2L	4402428	2L_4402428_SNP [dm3] 2L_4402428_SNP [dm6]	C	T	3.962e^-4	0.827	SYNONYMOUS_CODING CG33003 UPSTREAM Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5581433	X_5581433_SNP [dm3] X_5687400_SNP [dm6]	T	G	3.966e^-4	0.827	INTRON CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11628266	2L_11628266_INS [dm3] 2L_11628266_INS [dm6]	C	CATGTCTCC	3.967e^-4	0.827	INTERGENIC
2L	12613499	2L_12613499_SNP [dm3] 2L_12613499_SNP [dm6]	C	T	3.972e^-4	0.827	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Kr mE1_TFBS_Trl
X	6384583	X_6384583_SNP [dm3] X_6490550_SNP [dm6]	C	G	3.976e^-4	0.827	INTRON CG42340
3R	9230771	3R_9230771_DEL [dm3] 3R_13405049_DEL [dm6]	AATGTAAAAATTTAACACGA...	A	3.980e^-4	0.827	UPSTREAM yellow-e3 DOWNSTREAM yellow-e2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14960445	3R_14960445_SNP [dm3] 3R_19134723_SNP [dm6]	A	C	3.987e^-4	0.827	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3R	21678950	3R_21678950_SNP [dm3] 3R_25853228_SNP [dm6]	C	T	3.987e^-4	0.827	SYNONYMOUS_CODING CG5886	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20359685	3R_20359685_SNP [dm3] 3R_24533963_SNP [dm6]	A	C	3.990e^-4	0.827	NON_SYNONYMOUS_CODING ana1
X	4071181	X_4071181_SNP [dm3] X_4177148_SNP [dm6]	C	T	3.990e^-4	0.827	INTRON Fas2
X	4122853	X_4122853_SNP [dm3] X_4228820_SNP [dm6]	T	A	4.002e^-4	0.827	INTERGENIC
3R	14622995	3R_14622995_SNP [dm3] 3R_18797273_SNP [dm6]	A	C	4.004e^-4	0.827	INTERGENIC
2L	15198888	2L_15198888_SNP [dm3] 2L_15198888_SNP [dm6]	T	C	4.004e^-4	0.827	INTRON CG4168
2L	15198890	2L_15198890_SNP [dm3] 2L_15198890_SNP [dm6]	T	G	4.004e^-4	0.827	INTRON CG4168
2R	14966150	2R_14966150_SNP [dm3] 2R_19078645_SNP [dm6]	C	T	4.009e^-4	0.827	INTRON 5-HT1A
X	20527076	X_20527076_SNP [dm3] X_20656049_SNP [dm6]	A	G	4.011e^-4	0.827	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17203702	X_17203702_INS [dm3] X_17309669_INS [dm6]	A	ACATA	4.019e^-4	0.827	INTERGENIC
3R	12893928	3R_12893928_SNP [dm3] 3R_17068206_SNP [dm6]	G	A	4.025e^-4	0.827	INTRON Dad
3R	13332531	3R_13332531_SNP [dm3] 3R_17506809_SNP [dm6]	A	C	4.028e^-4	0.827	INTERGENIC
3L	16412068	3L_16412068_SNP [dm3] 3L_16418968_SNP [dm6]	T	G	4.032e^-4	0.827	SYNONYMOUS_CODING Aats-tyr UPSTREAM CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	26569810	3R_26569810_SNP [dm3] 3R_30744088_SNP [dm6]	C	T	4.041e^-4	0.827	UTR_3_PRIME CG15543 DOWNSTREAM Npc2g & 1 other
2R	7124815	2R_7124815_SNP [dm3] 2R_11237310_SNP [dm6]	G	T	4.049e^-4	0.827	SYNONYMOUS_CODING CG34224 UPSTREAM CG13217 DOWNSTREAM CG13216	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16603897	2L_16603897_SNP [dm3] 2L_16603897_SNP [dm6]	C	T	4.056e^-4	0.827	UTR_5_PRIME CG42389 INTRON CG42389
3L	15487206	3L_15487206_SNP [dm3] 3L_15494106_SNP [dm6]	C	T	4.060e^-4	0.827	UTR_5_PRIME CG12355 INTRON CG12355	TF binding site mE1_TFBS_Trl
3L	10962841	3L_10962841_SNP [dm3] 3L_10969741_SNP [dm6]	A	G	4.060e^-4	0.827	INTERGENIC
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	4.065e^-4	0.827	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
3R	11007534	3R_11007534_SNP [dm3] 3R_15181812_SNP [dm6]	C	T	4.079e^-4	0.827	UPSTREAM Mf INTRON Gyc88E
3R	12932426	3R_12932426_SNP [dm3] 3R_17106704_SNP [dm6]	G	A	4.080e^-4	0.827	SYNONYMOUS_CODING cher INTRON cher	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16414168	3L_16414168_SNP [dm3] 3L_16421068_SNP [dm6]	T	G	4.096e^-4	0.827	SYNONYMOUS_CODING CG33158	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6504087	2L_6504087_DEL [dm3] 2L_6504087_DEL [dm6]	CA	C	4.110e^-4	0.827	INTRON CG31637
2R	18292618	2R_18292618_SNP [dm3] 2R_22405113_SNP [dm6]	C	T	4.115e^-4	0.827	INTRON CG6044	TF binding site mE1_TFBS_Trl
3R	11863909	3R_11863909_SNP [dm3] 3R_16038187_SNP [dm6]	G	A	4.124e^-4	0.827	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15775545	2L_15775545_DEL [dm3] 2L_15775545_DEL [dm6]	ATATGT	A	4.128e^-4	0.827	DOWNSTREAM CG43760 INTERGENIC
3R	21678905	3R_21678905_SNP [dm3] 3R_25853183_SNP [dm6]	A	C	4.136e^-4	0.827	SYNONYMOUS_CODING CG5886	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14428138	X_14428138_SNP [dm3] X_14534105_SNP [dm6]	C	G	4.139e^-4	0.827	INTERGENIC
3R	24762402	3R_24762402_SNP [dm3] 3R_28936680_SNP [dm6]	A	T	4.140e^-4	0.827	INTRON CG14521
X	13930789	X_13930789_SNP [dm3] X_14036756_SNP [dm6]	T	G	4.141e^-4	0.827	INTERGENIC
X	7332964	X_7332964_DEL [dm3] X_7438931_DEL [dm6]	TGT	T	4.158e^-4	0.827	INTERGENIC
2L	12755465	2L_12755465_SNP [dm3] 2L_12755465_SNP [dm6]	C	A	4.169e^-4	0.827	INTERGENIC
2L	14754560	2L_14754560_SNP [dm3] 2L_14754560_SNP [dm6]	C	T	4.181e^-4	0.827	INTERGENIC
3L	5395009	3L_5395009_SNP [dm3] 3L_5401909_SNP [dm6]	G	T	4.184e^-4	0.827	INTERGENIC
2L	15844055	2L_15844055_SNP [dm3] 2L_15844055_SNP [dm6]	T	A	4.189e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	4681180	2L_4681180_SNP [dm3] 2L_4681180_SNP [dm6]	T	C	4.196e^-4	0.827	INTERGENIC
3R	9621144	3R_9621144_SNP [dm3] 3R_13795422_SNP [dm6]	G	T	4.197e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	5694351	3R_5694351_SNP [dm3] 3R_9868629_SNP [dm6]	C	T	4.198e^-4	0.827	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
2R	14958688	2R_14958688_SNP [dm3] 2R_19071183_SNP [dm6]	A	C	4.199e^-4	0.827	INTRON 5-HT1A
3L	3446240	3L_3446240_SNP [dm3] 3L_3446240_SNP [dm6]	G	A	4.210e^-4	0.827	INTRON eIF5B
3R	24607609	3R_24607609_SNP [dm3] 3R_28781887_SNP [dm6]	T	C	4.211e^-4	0.827	INTERGENIC
2L	4526235	2L_4526235_SNP [dm3] 2L_4526235_SNP [dm6]	T	C	4.214e^-4	0.827	NON_SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad
3R	6503319	3R_6503319_SNP [dm3] 3R_10677597_SNP [dm6]	A	C	4.220e^-4	0.827	UPSTREAM CG6465 DOWNSTREAM CG14688 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3L	12769975	3L_12769975_SNP [dm3] 3L_12776875_SNP [dm6]	C	T	4.228e^-4	0.827	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
X	19584100	X_19584100_SNP [dm3] X_19690067_SNP [dm6]	A	G	4.228e^-4	0.827	UTR_3_PRIME Mer DOWNSTREAM Mer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	13660816	3R_13660816_SNP [dm3] 3R_17835094_SNP [dm6]	A	T	4.229e^-4	0.827	INTRON tinc
3R	10181555	3R_10181555_SNP [dm3] 3R_14355833_SNP [dm6]	A	T	4.248e^-4	0.827	INTRON NK7.1
3R	8286850	3R_8286850_SNP [dm3] 3R_12461128_SNP [dm6]	G	A	4.252e^-4	0.827	SYNONYMOUS_CODING CG12267 UPSTREAM CG5961	TF binding site mE1_TFBS_inv
2L	10333803	2L_10333803_SNP [dm3] 2L_10333803_SNP [dm6]	G	T	4.252e^-4	0.827	UTR_5_PRIME GATAd UPSTREAM GATAd DOWNSTREAM CG5037	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11931607	3L_11931607_SNP [dm3] 3L_11938507_SNP [dm6]	C	A	4.255e^-4	0.827	SPLICE_SITE_REGION CG44837 UTR_5_PRIME CG44837	TF binding site mE1_TFBS_cad
3R	8390929	3R_8390929_SNP [dm3] 3R_12565207_SNP [dm6]	T	C	4.260e^-4	0.827	INTRON Octbeta2R
3R	16895659	3R_16895659_SNP [dm3] 3R_21069937_SNP [dm6]	T	A	4.266e^-4	0.827	DOWNSTREAM r-l & 1 other INTRON AnxB9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
X	20526908	X_20526908_SNP [dm3] X_20655881_SNP [dm6]	G	A	4.268e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5022356	2L_5022356_SNP [dm3] 2L_5022356_SNP [dm6]	G	C	4.269e^-4	0.827	INTRON vkg
2L	13954291	2L_13954291_SNP [dm3] 2L_13954291_SNP [dm6]	G	A	4.278e^-4	0.827	INTRON Ance-3
2R	7654371	2R_7654371_SNP [dm3] 2R_11766866_SNP [dm6]	G	T	4.280e^-4	0.827	INTRON ths
3L	10215594	3L_10215594_SNP [dm3] 3L_10222494_SNP [dm6]	C	T	4.287e^-4	0.827	INTRON scramb1
3R	1901647	3R_1901647_SNP [dm3] 3R_6075925_SNP [dm6]	G	T	4.289e^-4	0.827	DOWNSTREAM Or83c INTERGENIC
X	19655505	X_19655505_SNP [dm3] X_19761472_SNP [dm6]	G	T	4.291e^-4	0.827	SYNONYMOUS_CODING CG12702	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1194741	2L_1194741_SNP [dm3] 2L_1194741_SNP [dm6]	C	T	4.294e^-4	0.827	INTRON CG5001
3L	6959362	3L_6959362_SNP [dm3] 3L_6966262_SNP [dm6]	C	G	4.299e^-4	0.827	INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13954266	2L_13954266_SNP [dm3] 2L_13954266_SNP [dm6]	G	A	4.300e^-4	0.827	INTRON Ance-3
3R	7439932	3R_7439932_INS [dm3] 3R_11614210_INS [dm6]	G	ACA	4.305e^-4	0.827	INTRON Jupiter	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	12814200	X_12814200_SNP [dm3] X_12920167_SNP [dm6]	G	A	4.307e^-4	0.827	INTRON fne
3R	10812451	3R_10812451_SNP [dm3] 3R_14986729_SNP [dm6]	A	G	4.307e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	2361239	3R_2361239_DEL [dm3] 3R_6535517_DEL [dm6]	AATGA	A	4.309e^-4	0.827	INTRON dpr11	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6524815	2R_6524815_SNP [dm3] 2R_10637310_SNP [dm6]	T	C	4.325e^-4	0.827	INTRON CG11883
2R	17644142	2R_17644142_SNP [dm3] 2R_21756637_SNP [dm6]	T	G	4.330e^-4	0.827	UPSTREAM Grx-1 INTERGENIC
2R	17449897	2R_17449897_SNP [dm3] 2R_21562392_SNP [dm6]	A	G	4.331e^-4	0.827	INTRON CG10440
2L	2587868	2L_2587868_DEL [dm3] 2L_2587868_DEL [dm6]	TTGCCCCTTTGCAATTCCCG...	T	4.338e^-4	0.827	INTERGENIC
3L	16447472	3L_16447472_SNP [dm3] 3L_16454372_SNP [dm6]	C	T	4.349e^-4	0.827	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17908273	3R_17908273_SNP [dm3] 3R_22082551_SNP [dm6]	C	T	4.351e^-4	0.827	INTRON CG13408
X	4759344	X_4759344_SNP [dm3] X_4865311_SNP [dm6]	T	A	4.357e^-4	0.827	INTRON CG42594
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	4.359e^-4	0.827	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	17087274	2R_17087274_SNP [dm3] 2R_21199769_SNP [dm6]	G	A	4.360e^-4	0.827	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	4889635	3L_4889635_SNP [dm3] 3L_4889635_SNP [dm6]	G	A	4.364e^-4	0.827	SYNONYMOUS_CODING CG17150
X	8710660	X_8710660_SNP [dm3] X_8816627_SNP [dm6]	T	C	4.371e^-4	0.827	INTERGENIC
3L	12454092	3L_12454092_SNP [dm3] 3L_12460992_SNP [dm6]	A	C	4.372e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14040169	3R_14040169_SNP [dm3] 3R_18214447_SNP [dm6]	C	A	4.377e^-4	0.827	SYNONYMOUS_CODING CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4243195	3R_4243195_SNP [dm3] 3R_8417473_SNP [dm6]	G	T	4.392e^-4	0.827	INTRON CG45263
3R	22868040	3R_22868040_SNP [dm3] 3R_27042318_SNP [dm6]	C	T	4.394e^-4	0.827	INTRON RYa-R
2L	15641190	2L_15641190_SNP [dm3] 2L_15641190_SNP [dm6]	T	G	4.396e^-4	0.827	INTERGENIC
X	19280189	X_19280189_SNP [dm3] X_19386156_SNP [dm6]	T	C	4.397e^-4	0.827	INTRON kek5
3R	4384364	3R_4384364_DEL [dm3] 3R_8558642_DEL [dm6]	CAGATAAGAAAATTCTTAAC...	C	4.398e^-4	0.827	DOWNSTREAM pch2 INTERGENIC
3R	7387478	3R_7387478_SNP [dm3] 3R_11561756_SNP [dm6]	C	T	4.399e^-4	0.827	INTRON sea & 1 other
2R	11302167	2R_11302167_SNP [dm3] 2R_15414662_SNP [dm6]	A	C	4.401e^-4	0.827	INTRON CG43729
3R	12477292	3R_12477292_INS [dm3] 3R_16651570_INS [dm6]	T	TT	4.401e^-4	0.827	FRAME_SHIFT CG14907 UPSTREAM CG14906 DOWNSTREAM modSP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12280834	2L_12280834_SNP [dm3] 2L_12280834_SNP [dm6]	T	A	4.408e^-4	0.827	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7900734	2L_7900734_SNP [dm3] 2L_7900734_SNP [dm6]	T	C	4.408e^-4	0.827	INTRON Snoo
3L	6385232	3L_6385232_SNP [dm3] 3L_6392132_SNP [dm6]	G	A	4.411e^-4	0.827	INTERGENIC
2L	11910741	2L_11910741_DEL [dm3] 2L_11910741_DEL [dm6]	AA	A	4.413e^-4	0.827	INTRON Pde1c
2R	12848963	2R_12848963_SNP [dm3] 2R_16961458_SNP [dm6]	T	C	4.417e^-4	0.827	INTERGENIC
3R	17682885	3R_17682885_SNP [dm3] 3R_21857163_SNP [dm6]	A	T	4.421e^-4	0.827	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	4291273	3L_4291273_SNP [dm3] 3L_4291273_SNP [dm6]	T	A	4.426e^-4	0.827	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
3R	24601653	3R_24601653_SNP [dm3] 3R_28775931_SNP [dm6]	C	A	4.427e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9833076	3L_9833076_SNP [dm3] 3L_9839976_SNP [dm6]	G	A	4.430e^-4	0.827	UTR_3_PRIME RasGAP1
2R	7557893	2R_7557893_SNP [dm3] 2R_11670388_SNP [dm6]	G	T	4.434e^-4	0.827	INTRON Roc2 & 1 other
3R	2865935	3R_2865935_SNP [dm3] 3R_7040213_SNP [dm6]	T	C	4.446e^-4	0.827	DOWNSTREAM CR44933 INTERGENIC	transposable element FlyBase
2L	13238307	2L_13238307_SNP [dm3] 2L_13238307_SNP [dm6]	C	T	4.458e^-4	0.827	INTRON CG5867
X	7728507	X_7728507_SNP [dm3] X_7834474_SNP [dm6]	T	C	4.461e^-4	0.827	INTRON CG1402
3L	5055815	3L_5055815_SNP [dm3] 3L_5055815_SNP [dm6]	A	G	4.463e^-4	0.827	INTRON Con

By genomic position
Variant impact
Gene name

Cuticul_n_C25 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results