DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.653e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	1.530e-05

Kruskal-Wallis test

Covariate	χ²	p-value	Significance

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2437 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	1.300e^-17	2.439e^-11	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	4.083e^-17	3.829e^-11	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	1.185e^-16	7.410e^-11	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	6.514e^-16	2.571e^-10	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	6.855e^-16	2.571e^-10	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	2.051e^-15	6.411e^-10	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	5.237e^-15	1.403e^-9	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	5.988e^-15	1.404e^-9	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	5.953e^-14	1.241e^-8	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	2.678e^-13	5.023e^-8	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	3.769e^-13	6.427e^-8	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	4.669e^-13	7.298e^-8	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	5.301e^-13	7.648e^-8	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	3.840e^-12	4.801e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	3.840e^-12	4.801e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	8.765e^-12	9.892e^-7	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	8.965e^-12	9.892e^-7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	1.142e^-11	1.190e^-6	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	1.628e^-11	1.607e^-6	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	2.340e^-11	2.195e^-6	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	2.474e^-11	2.209e^-6	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	2.938e^-11	2.505e^-6	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	4.521e^-11	3.687e^-6	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	1.049e^-10	8.196e^-6	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	1.142e^-10	8.469e^-6	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	1.174e^-10	8.469e^-6	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	2.148e^-10	1.493e^-5	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	3.019e^-10	2.023e^-5	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	3.140e^-10	2.031e^-5	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	3.675e^-10	2.289e^-5	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	3.782e^-10	2.289e^-5	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	5.375e^-10	3.074e^-5	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528806	2L_8528806_SNP [dm3] 2L_8528806_SNP [dm6]	A	C	5.408e^-10	3.074e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	6.612e^-10	3.647e^-5	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	7.772e^-10	4.152e^-5	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8525183	2L_8525183_SNP [dm3] 2L_8525183_SNP [dm6]	G	T	8.115e^-10	4.152e^-5	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8515600	2L_8515600_SNP [dm3] 2L_8515600_SNP [dm6]	T	C	8.386e^-10	4.152e^-5	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	8.411e^-10	4.152e^-5	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	1.051e^-9	5.053e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520815	2L_8520815_SNP [dm3] 2L_8520815_SNP [dm6]	T	C	1.228e^-9	5.756e^-5	NON_SYNONYMOUS_CODING CG13091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	1.655e^-9	7.574e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8515035	2L_8515035_SNP [dm3] 2L_8515035_SNP [dm6]	G	T	2.375e^-9	1.061e^-4	UPSTREAM PIG-U & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8517273	2L_8517273_SNP [dm3] 2L_8517273_SNP [dm6]	A	G	2.749e^-9	1.199e^-4	NON_SYNONYMOUS_CODING mRpL51 UPSTREAM CG13090 DOWNSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	3.261e^-9	1.390e^-4	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	3.986e^-9	1.662e^-4	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	4.487e^-9	1.830e^-4	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8515461	2L_8515461_SNP [dm3] 2L_8515461_SNP [dm6]	T	C	5.029e^-9	2.007e^-4	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515387	2L_8515387_SNP [dm3] 2L_8515387_SNP [dm6]	C	T	6.763e^-9	2.643e^-4	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8514835	2L_8514835_SNP [dm3] 2L_8514835_SNP [dm6]	A	T	7.011e^-9	2.684e^-4	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8515482	2L_8515482_SNP [dm3] 2L_8515482_SNP [dm6]	C	T	1.112e^-8	4.170e^-4	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	1.293e^-8	4.756e^-4	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8523105	2L_8523105_SNP [dm3] 2L_8523105_SNP [dm6]	G	C	1.470e^-8	5.204e^-4	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8523133	2L_8523133_SNP [dm3] 2L_8523133_SNP [dm6]	G	A	1.470e^-8	5.204e^-4	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	1.698e^-8	5.900e^-4	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	2.161e^-8	7.370e^-4	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515386	2L_8515386_SNP [dm3] 2L_8515386_SNP [dm6]	T	C	2.657e^-8	8.874e^-4	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515377	2L_8515377_SNP [dm3] 2L_8515377_SNP [dm6]	T	C	2.697e^-8	8.874e^-4	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	2.959e^-8	9.407e^-4	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	2.959e^-8	9.407e^-4	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515266	2L_8515266_SNP [dm3] 2L_8515266_SNP [dm6]	A	G	3.864e^-8	0.001	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8525341	2L_8525341_SNP [dm3] 2L_8525341_SNP [dm6]	C	A	7.877e^-8	0.002	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	9.029e^-8	0.003	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8515362	2L_8515362_SNP [dm3] 2L_8515362_SNP [dm6]	T	G	9.198e^-8	0.003	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	9.599e^-8	0.003	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8515314	2L_8515314_SNP [dm3] 2L_8515314_SNP [dm6]	A	C	1.473e^-7	0.004	UPSTREAM CG13097 INTRON PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8525339	2L_8525339_SNP [dm3] 2L_8525339_SNP [dm6]	G	A	1.647e^-7	0.005	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8521004	2L_8521004_SNP [dm3] 2L_8521004_SNP [dm6]	C	A	1.814e^-7	0.005	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8513167	2L_8513167_SNP [dm3] 2L_8513167_SNP [dm6]	C	T	2.210e^-7	0.006	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8525344	2L_8525344_SNP [dm3] 2L_8525344_SNP [dm6]	G	A	2.565e^-7	0.007	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525346	2L_8525346_SNP [dm3] 2L_8525346_SNP [dm6]	C	T	2.565e^-7	0.007	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525349	2L_8525349_SNP [dm3] 2L_8525349_SNP [dm6]	C	T	3.255e^-7	0.009	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8523117	2L_8523117_SNP [dm3] 2L_8523117_SNP [dm6]	A	G	3.453e^-7	0.009	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	15659776	2R_15659776_SNP [dm3] 2R_19772271_SNP [dm6]	C	T	4.138e^-7	0.011	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8527887	2L_8527887_SNP [dm3] 2L_8527887_SNP [dm6]	C	A	4.303e^-7	0.011	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8525348	2L_8525348_SNP [dm3] 2L_8525348_SNP [dm6]	T	A	5.682e^-7	0.014	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8522155	2L_8522155_SNP [dm3] 2L_8522155_SNP [dm6]	A	C	6.146e^-7	0.015	UTR_5_PRIME Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8529262	2L_8529262_SNP [dm3] 2L_8529262_SNP [dm6]	T	C	6.508e^-7	0.016	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	7.753e^-7	0.018	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2L	8512026	2L_8512026_SNP [dm3] 2L_8512026_SNP [dm6]	G	A	7.789e^-7	0.018	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	7097308	3L_7097308_SNP [dm3] 3L_7104208_SNP [dm6]	A	G	7.893e^-7	0.019	INTRON form3
2R	5731332	2R_5731332_SNP [dm3] 2R_9843827_SNP [dm6]	C	T	1.037e^-6	0.024	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	8514725	2L_8514725_SNP [dm3] 2L_8514725_SNP [dm6]	C	T	1.113e^-6	0.025	SYNONYMOUS_CODING CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5735501	2R_5735501_SNP [dm3] 2R_9847996_SNP [dm6]	T	A	1.659e^-6	0.037	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8514798	2L_8514798_SNP [dm3] 2L_8514798_SNP [dm6]	C	T	1.972e^-6	0.044	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5762919	2R_5762919_SNP [dm3] 2R_9875414_SNP [dm6]	G	A	2.133e^-6	0.047	UTR_5_PRIME CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB INTRON CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8510992	2L_8510992_SNP [dm3] 2L_8510992_SNP [dm6]	G	T	2.231e^-6	0.049	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26751873	3R_26751873_SNP [dm3] 3R_30926151_SNP [dm6]	C	T	2.735e^-6	0.059	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
2L	8512024	2L_8512024_SNP [dm3] 2L_8512024_SNP [dm6]	T	G	2.864e^-6	0.061	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8506924	2L_8506924_SNP [dm3] 2L_8506924_SNP [dm6]	G	A	2.928e^-6	0.062	UPSTREAM Dh31 INTERGENIC
3L	18073712	3L_18073712_SNP [dm3] 3L_18080612_SNP [dm6]	T	C	3.066e^-6	0.064	DOWNSTREAM CR43253 INTERGENIC
2L	8530374	2L_8530374_SNP [dm3] 2L_8530374_SNP [dm6]	T	C	3.280e^-6	0.068	INTRON CG17834	TF binding site mE1_TFBS_HSA
2L	8530229	2L_8530229_SNP [dm3] 2L_8530229_SNP [dm6]	G	A	3.652e^-6	0.074	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8512102	2L_8512102_SNP [dm3] 2L_8512102_SNP [dm6]	T	C	3.658e^-6	0.074	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8512119	2L_8512119_INS [dm3] 2L_8512119_INS [dm6]	T	TATTAGTAGAGACAGAC...	3.738e^-6	0.075	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8512136	2L_8512136_INS [dm3] 2L_8512136_INS [dm6]	A	AAAACATTAACATATTAACT...	4.183e^-6	0.082	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8511667	2L_8511667_SNP [dm3] 2L_8511667_SNP [dm6]	C	G	4.214e^-6	0.082	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8512125	2L_8512125_INS [dm3] 2L_8512125_INS [dm6]	T	TCGATTCAAACTCATGCTAA...	4.372e^-6	0.085	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8529353	2L_8529353_DEL [dm3] 2L_8529353_DEL [dm6]	ATAAAAA	A	4.674e^-6	0.089	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_prd
3L	14289841	3L_14289841_SNP [dm3] 3L_14296741_SNP [dm6]	T	G	4.786e^-6	0.091	INTRON fz
2R	5735181	2R_5735181_SNP [dm3] 2R_9847676_SNP [dm6]	T	G	5.163e^-6	0.097	UPSTREAM CG1671 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	5741733	2R_5741733_SNP [dm3] 2R_9854228_SNP [dm6]	A	G	5.493e^-6	0.102	INTRON CG1516	TF binding site mE1_TFBS_cad
2R	5735502	2R_5735502_SNP [dm3] 2R_9847997_SNP [dm6]	C	A	5.638e^-6	0.104	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8529430	2L_8529430_SNP [dm3] 2L_8529430_SNP [dm6]	T	A	5.797e^-6	0.105	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3L	7097305	3L_7097305_SNP [dm3] 3L_7104205_SNP [dm6]	T	G	5.840e^-6	0.105	INTRON form3
2L	8512075	2L_8512075_SNP [dm3] 2L_8512075_SNP [dm6]	A	T	6.881e^-6	0.122	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	8288353	3L_8288353_SNP [dm3] 3L_8295253_SNP [dm6]	T	A	6.967e^-6	0.122	UTR_5_PRIME CG7201
2R	5760716	2R_5760716_SNP [dm3] 2R_9873211_SNP [dm6]	C	T	6.968e^-6	0.122	INTRON cbx & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_sens
2R	11871447	2R_11871447_SNP [dm3] 2R_15983942_SNP [dm6]	T	C	7.109e^-6	0.123	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
2L	8530244	2L_8530244_SNP [dm3] 2L_8530244_SNP [dm6]	G	A	7.914e^-6	0.136	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8457068	2R_8457068_SNP [dm3] 2R_12569563_SNP [dm6]	T	C	8.271e^-6	0.141	SYNONYMOUS_CODING Ak6 UPSTREAM stil DOWNSTREAM Cyp301a1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	12252148	2R_12252148_SNP [dm3] 2R_16364643_SNP [dm6]	C	T	8.899e^-6	0.149	UTR_5_PRIME CG15711 UPSTREAM CG15711
2R	5734458	2R_5734458_SNP [dm3] 2R_9846953_SNP [dm6]	T	G	8.942e^-6	0.149	UPSTREAM Orc6 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8533459	2L_8533459_SNP [dm3] 2L_8533459_SNP [dm6]	A	G	8.975e^-6	0.149	INTRON CG17834	TF binding site mE1_TFBS_cad
2R	5735512	2R_5735512_SNP [dm3] 2R_9848007_SNP [dm6]	C	T	9.534e^-6	0.157	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	26390211	3R_26390211_SNP [dm3] 3R_30564489_SNP [dm6]	G	A	1.003e^-5	0.164	INTRON tmod	TF binding site BDTNP1_TFBS_dl
2L	8506609	2L_8506609_SNP [dm3] 2L_8506609_SNP [dm6]	G	A	1.116e^-5	0.18	INTRON Dh31
3R	21429529	3R_21429529_SNP [dm3] 3R_25603807_SNP [dm6]	A	C	1.130e^-5	0.181	UTR_3_PRIME msi INTRON ymp
3R	25562532	3R_25562532_SNP [dm3] 3R_29736810_SNP [dm6]	G	A	1.153e^-5	0.183	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10704121	2L_10704121_SNP [dm3] 2L_10704121_SNP [dm6]	A	T	1.187e^-5	0.187	INTRON Lip2 & 1 other
2L	8503802	2L_8503802_SNP [dm3] 2L_8503802_SNP [dm6]	A	T	1.207e^-5	0.188	INTRON Dh31
2R	13023236	2R_13023236_SNP [dm3] 2R_17135731_SNP [dm6]	T	G	1.210e^-5	0.188	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
3R	16763353	3R_16763353_SNP [dm3] 3R_20937631_SNP [dm6]	T	C	1.232e^-5	0.189	INTRON CG31191
3L	10377618	3L_10377618_SNP [dm3] 3L_10384518_SNP [dm6]	A	C	1.240e^-5	0.189	INTERGENIC
2R	11870835	2R_11870835_SNP [dm3] 2R_15983330_SNP [dm6]	G	A	1.269e^-5	0.192	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
3R	20013489	3R_20013489_SNP [dm3] 3R_24187767_SNP [dm6]	G	A	1.314e^-5	0.196	UTR_3_PRIME CG5515 & 1 other	TF binding site mE1_TFBS_sens
X	5004720	X_5004720_SNP [dm3] X_5110687_SNP [dm6]	G	A	1.318e^-5	0.196	INTRON rg & 1 other
2R	11880074	2R_11880074_SNP [dm3] 2R_15992569_SNP [dm6]	C	T	1.414e^-5	0.209	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15690713	2R_15690713_SNP [dm3] 2R_19803208_SNP [dm6]	C	G	1.441e^-5	0.211	DOWNSTREAM tRNA:K2:56EF INTERGENIC
2R	11799040	2R_11799040_SNP [dm3] 2R_15911535_SNP [dm6]	C	T	1.478e^-5	0.214	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8503801	2L_8503801_SNP [dm3] 2L_8503801_SNP [dm6]	G	A	1.483e^-5	0.214	INTRON Dh31
2R	5738442	2R_5738442_SNP [dm3] 2R_9850937_SNP [dm6]	A	G	1.537e^-5	0.22	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
2L	8531677	2L_8531677_SNP [dm3] 2L_8531677_SNP [dm6]	C	T	1.546e^-5	0.22	INTRON CG17834
2L	8531363	2L_8531363_SNP [dm3] 2L_8531363_SNP [dm6]	A	T	1.560e^-5	0.22	INTRON CG17834
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	1.592e^-5	0.223	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	16763338	3R_16763338_SNP [dm3] 3R_20937616_SNP [dm6]	T	C	1.653e^-5	0.23	INTRON CG31191
2R	5731874	2R_5731874_SNP [dm3] 2R_9844369_SNP [dm6]	C	A	1.678e^-5	0.231	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	8529328	2L_8529328_SNP [dm3] 2L_8529328_SNP [dm6]	G	A	1.721e^-5	0.235	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
3L	12195874	3L_12195874_DEL [dm3] 3L_12202774_DEL [dm6]	AGCTA	A	1.728e^-5	0.235	INTRON Adk1
3L	7097367	3L_7097367_SNP [dm3] 3L_7104267_SNP [dm6]	G	A	1.788e^-5	0.241	INTRON form3
3L	18025519	3L_18025519_SNP [dm3] 3L_18032419_SNP [dm6]	A	T	1.817e^-5	0.242	INTRON Eip75B
3R	23268180	3R_23268180_SNP [dm3] 3R_27442458_SNP [dm6]	T	A	1.822e^-5	0.242	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	11334294	2R_11334294_SNP [dm3] 2R_15446789_SNP [dm6]	G	T	1.846e^-5	0.244	INTRON CG43729
3L	4144161	3L_4144161_SNP [dm3] 3L_4144161_SNP [dm6]	A	G	1.875e^-5	0.246	INTRON CG32260
2L	6834364	2L_6834364_SNP [dm3] 2L_6834364_SNP [dm6]	T	C	1.958e^-5	0.254	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24824602	3R_24824602_SNP [dm3] 3R_28998880_SNP [dm6]	T	C	1.963e^-5	0.254	INTRON wat
3R	23259539	3R_23259539_SNP [dm3] 3R_27433817_SNP [dm6]	G	A	1.980e^-5	0.254	INTRON side
2L	8530717	2L_8530717_SNP [dm3] 2L_8530717_SNP [dm6]	A	T	2.030e^-5	0.258	INTRON CG17834
2R	5735690	2R_5735690_SNP [dm3] 2R_9848185_SNP [dm6]	A	G	2.034e^-5	0.258	UPSTREAM Prosalpha7 INTRON CG1671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	13867788	2R_13867788_SNP [dm3] 2R_17980283_SNP [dm6]	A	T	2.072e^-5	0.259	INTRON dpr13
2R	13867801	2R_13867801_SNP [dm3] 2R_17980296_SNP [dm6]	A	C	2.072e^-5	0.259	INTRON dpr13
3R	26853556	3R_26853556_DEL [dm3] 3R_31027834_DEL [dm6]	AA	A	2.121e^-5	0.263	INTERGENIC
2L	8509116	2L_8509116_SNP [dm3] 2L_8509116_SNP [dm6]	C	T	2.173e^-5	0.266	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
3L	14288209	3L_14288209_SNP [dm3] 3L_14295109_SNP [dm6]	A	G	2.178e^-5	0.266	INTRON fz
2R	13996704	2R_13996704_SNP [dm3] 2R_18109199_SNP [dm6]	A	T	2.215e^-5	0.266	UPSTREAM CG5756 & 1 other INTERGENIC
3L	14189504	3L_14189504_SNP [dm3] 3L_14196404_SNP [dm6]	A	T	2.233e^-5	0.266	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	4144192	3L_4144192_SNP [dm3] 3L_4144192_SNP [dm6]	A	C	2.255e^-5	0.266	INTRON CG32260
2R	11883363	2R_11883363_SNP [dm3] 2R_15995858_SNP [dm6]	A	G	2.257e^-5	0.266	SYNONYMOUS_CODING ATPCL
3L	14160357	3L_14160357_SNP [dm3] 3L_14167257_SNP [dm6]	T	C	2.264e^-5	0.266	INTERGENIC	regulatory region REDfly_CRMs
3L	2580085	3L_2580085_SNP [dm3] 3L_2580085_SNP [dm6]	A	G	2.273e^-5	0.266	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11880191	2R_11880191_SNP [dm3] 2R_15992686_SNP [dm6]	C	G	2.291e^-5	0.266	UTR_5_PRIME CG8320 UPSTREAM Pex11 DOWNSTREAM ATPCL	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5736012	2R_5736012_SNP [dm3] 2R_9848507_SNP [dm6]	G	A	2.291e^-5	0.266	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4142796	3L_4142796_SNP [dm3] 3L_4142796_SNP [dm6]	C	T	2.332e^-5	0.266	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3L	4142801	3L_4142801_SNP [dm3] 3L_4142801_SNP [dm6]	G	A	2.332e^-5	0.266	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3L	4144201	3L_4144201_SNP [dm3] 3L_4144201_SNP [dm6]	C	A	2.353e^-5	0.266	INTRON CG32260
3L	4144236	3L_4144236_SNP [dm3] 3L_4144236_SNP [dm6]	C	T	2.353e^-5	0.266	INTRON CG32260
2L	8529275	2L_8529275_SNP [dm3] 2L_8529275_SNP [dm6]	A	G	2.354e^-5	0.266	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2R	5763531	2R_5763531_SNP [dm3] 2R_9876026_SNP [dm6]	C	T	2.384e^-5	0.268	SYNONYMOUS_CODING CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26745266	3R_26745266_SNP [dm3] 3R_30919544_SNP [dm6]	T	G	2.409e^-5	0.269	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14033535	X_14033535_INS [dm3] X_14139502_INS [dm6]	T	TT	2.449e^-5	0.271	INTERGENIC
2L	8507391	2L_8507391_SNP [dm3] 2L_8507391_SNP [dm6]	T	A	2.480e^-5	0.271	UPSTREAM Dh31 INTERGENIC
2R	11879188	2R_11879188_SNP [dm3] 2R_15991683_SNP [dm6]	G	A	2.484e^-5	0.271	SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	7097362	3L_7097362_SNP [dm3] 3L_7104262_SNP [dm6]	T	G	2.488e^-5	0.271	INTRON form3
2L	8545652	2L_8545652_SNP [dm3] 2L_8545652_SNP [dm6]	A	G	2.520e^-5	0.273	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_Kr
3L	18024424	3L_18024424_SNP [dm3] 3L_18031324_SNP [dm6]	C	T	2.535e^-5	0.273	INTRON Eip75B
2L	12343662	2L_12343662_SNP [dm3] 2L_12343662_SNP [dm6]	C	T	2.543e^-5	0.273	UTR_3_PRIME CG43813 UPSTREAM bru-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16726316	3R_16726316_SNP [dm3] 3R_20900594_SNP [dm6]	C	T	2.574e^-5	0.274	INTERGENIC
X	7981510	X_7981510_INS [dm3] X_8087477_INS [dm6]	T	TT	2.596e^-5	0.275	UPSTREAM CG2256 DOWNSTREAM Ubc-E2H INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14189503	3L_14189503_SNP [dm3] 3L_14196403_SNP [dm6]	G	A	2.612e^-5	0.275	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	23257976	3R_23257976_SNP [dm3] 3R_27432254_SNP [dm6]	A	G	2.624e^-5	0.275	INTRON side
3R	15461899	3R_15461899_SNP [dm3] 3R_19636177_SNP [dm6]	C	A	2.699e^-5	0.281	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
X	22266786	X_22266786_DEL [dm3] X_22864950_DEL [dm6]	AT	C	2.738e^-5	0.283	INTRON CG42346
2R	9756529	2R_9756529_SNP [dm3] 2R_13869024_SNP [dm6]	C	G	2.765e^-5	0.283	INTRON shot
3R	25862628	3R_25862628_SNP [dm3] 3R_30036906_SNP [dm6]	T	C	2.766e^-5	0.283	UPSTREAM CG7928 DOWNSTREAM ocn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	11878211	2R_11878211_SNP [dm3] 2R_15990706_SNP [dm6]	A	G	2.779e^-5	0.283	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12565484	2R_12565484_SNP [dm3] 2R_16677979_SNP [dm6]	T	C	2.797e^-5	0.284	INTRON CG30463
3L	9102964	3L_9102964_SNP [dm3] 3L_9109864_SNP [dm6]	G	A	2.834e^-5	0.286	INTRON bol
3R	9649463	3R_9649463_INS [dm3] 3R_13823741_INS [dm6]	T	TGTACCAAGT	2.876e^-5	0.287	INTERGENIC
2R	15690575	2R_15690575_SNP [dm3] 2R_19803070_SNP [dm6]	C	T	2.879e^-5	0.287	DOWNSTREAM tRNA:K2:56EF INTERGENIC
2R	12566599	2R_12566599_SNP [dm3] 2R_16679094_SNP [dm6]	A	G	2.902e^-5	0.287	INTRON CG30463
2R	8458965	2R_8458965_SNP [dm3] 2R_12571460_SNP [dm6]	C	T	2.906e^-5	0.287	SYNONYMOUS_CODING stil UPSTREAM ClC-b
X	18531638	X_18531638_SNP [dm3] X_18637605_SNP [dm6]	T	A	2.922e^-5	0.287	INTRON Rip11	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8541841	2L_8541841_SNP [dm3] 2L_8541841_SNP [dm6]	A	G	2.956e^-5	0.287	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4142355	3L_4142355_SNP [dm3] 3L_4142355_SNP [dm6]	T	A	2.960e^-5	0.287	UPSTREAM CG32260 DOWNSTREAM Ras64B & 1 other INTERGENIC
2L	8504943	2L_8504943_SNP [dm3] 2L_8504943_SNP [dm6]	T	C	2.966e^-5	0.287	INTRON Dh31
2L	4929944	2L_4929944_SNP [dm3] 2L_4929944_SNP [dm6]	T	G	2.985e^-5	0.287	INTRON hoe1
3L	7097325	3L_7097325_SNP [dm3] 3L_7104225_SNP [dm6]	A	G	3.014e^-5	0.288	INTRON form3
2R	13920139	2R_13920139_SNP [dm3] 2R_18032634_SNP [dm6]	A	G	3.053e^-5	0.291	INTERGENIC
2R	5710601	2R_5710601_SNP [dm3] 2R_9823096_SNP [dm6]	T	A	3.097e^-5	0.293	UTR_3_PRIME dila UPSTREAM CG30001	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_ttk
3R	22433495	3R_22433495_SNP [dm3] 3R_26607773_SNP [dm6]	A	G	3.107e^-5	0.293	EXON CR44951
2R	15037500	2R_15037500_SNP [dm3] 2R_19149995_SNP [dm6]	A	G	3.123e^-5	0.293	INTRON ena
2L	7532468	2L_7532468_SNP [dm3] 2L_7532468_SNP [dm6]	G	A	3.208e^-5	0.299	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15037481	2R_15037481_SNP [dm3] 2R_19149976_SNP [dm6]	C	G	3.294e^-5	0.305	INTRON ena
X	22266867	X_22266867_INS [dm3] X_22865031_INS [dm6]	G	TC	3.297e^-5	0.305	INTRON CG42346
2R	8467841	2R_8467841_SNP [dm3] 2R_12580336_SNP [dm6]	G	A	3.332e^-5	0.306	NON_SYNONYMOUS_CODING Sin3A
2R	5762331	2R_5762331_SNP [dm3] 2R_9874826_SNP [dm6]	C	G	3.355e^-5	0.307	UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15458421	2L_15458421_SNP [dm3] 2L_15458421_SNP [dm6]	T	G	3.413e^-5	0.309	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	10467650	2L_10467650_SNP [dm3] 2L_10467650_SNP [dm6]	A	G	3.418e^-5	0.309	INTRON RluA-1
2R	14784794	2R_14784794_SNP [dm3] 2R_18897289_SNP [dm6]	A	C	3.437e^-5	0.309	INTRON sano
2L	1746146	2L_1746146_SNP [dm3] 2L_1746146_SNP [dm6]	C	A	3.439e^-5	0.309	INTRON CG17646
2L	8521077	2L_8521077_SNP [dm3] 2L_8521077_SNP [dm6]	T	C	3.460e^-5	0.309	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	11798822	2R_11798822_SNP [dm3] 2R_15911317_SNP [dm6]	C	T	3.498e^-5	0.311	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8531131	2L_8531131_SNP [dm3] 2L_8531131_SNP [dm6]	C	A	3.519e^-5	0.311	INTRON CG17834
2L	5387034	2L_5387034_SNP [dm3] 2L_5387034_SNP [dm6]	A	G	3.835e^-5	0.338	UPSTREAM CR44745 INTERGENIC	TF binding site mE1_TFBS_inv
2R	16062350	2R_16062350_SNP [dm3] 2R_20174845_SNP [dm6]	T	C	3.855e^-5	0.338	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12251727	2R_12251727_SNP [dm3] 2R_16364222_SNP [dm6]	A	G	3.962e^-5	0.345	UTR_5_PRIME CG15711 DOWNSTREAM CG6262
3R	20013894	3R_20013894_SNP [dm3] 3R_24188172_SNP [dm6]	T	C	3.972e^-5	0.345	SYNONYMOUS_CODING CG5515 DOWNSTREAM CHORD & 1 other	TF binding site mE1_TFBS_sens
2L	5035443	2L_5035443_SNP [dm3] 2L_5035443_SNP [dm6]	G	A	4.001e^-5	0.346	SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15273307	2R_15273307_SNP [dm3] 2R_19385802_SNP [dm6]	A	G	4.025e^-5	0.346	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
3L	7097350	3L_7097350_SNP [dm3] 3L_7104250_SNP [dm6]	A	T	4.053e^-5	0.347	INTRON form3
2L	21322911	2L_21322911_SNP [dm3] 2L_21322911_SNP [dm6]	T	C	4.107e^-5	0.35	INTERGENIC
X	22266671	X_22266671_SNP [dm3] X_22864835_SNP [dm6]	C	A	4.127e^-5	0.35	INTRON CG42346
3L	14286756	3L_14286756_SNP [dm3] 3L_14293656_SNP [dm6]	T	G	4.140e^-5	0.35	INTRON fz
2R	5762328	2R_5762328_SNP [dm3] 2R_9874823_SNP [dm6]	A	G	4.308e^-5	0.362	SPLICE_SITE_REGION cbx UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11998893	3R_11998893_SNP [dm3] 3R_16173171_SNP [dm6]	A	G	4.495e^-5	0.376	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11824324	X_11824324_DEL [dm3] X_11930291_DEL [dm6]	TGGTGAAACCAAGT...	A	4.579e^-5	0.382	DOWNSTREAM cac INTRON CG10362
2L	2893660	2L_2893660_SNP [dm3] 2L_2893660_SNP [dm6]	A	G	4.625e^-5	0.382	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12528894	2L_12528894_SNP [dm3] 2L_12528894_SNP [dm6]	A	G	4.632e^-5	0.382	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	5160637	2L_5160637_SNP [dm3] 2L_5160637_SNP [dm6]	T	A	4.645e^-5	0.382	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	5771199	2R_5771199_SNP [dm3] 2R_9883694_SNP [dm6]	C	T	4.686e^-5	0.384	UTR_3_PRIME CG1513
3L	18024426	3L_18024426_SNP [dm3] 3L_18031326_SNP [dm6]	A	G	4.742e^-5	0.387	INTRON Eip75B
3R	23263348	3R_23263348_SNP [dm3] 3R_27437626_SNP [dm6]	C	G	4.791e^-5	0.388	UPSTREAM side INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10848239	3L_10848239_SNP [dm3] 3L_10855139_SNP [dm6]	G	A	4.814e^-5	0.388	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16219131	2L_16219131_SNP [dm3] 2L_16219131_SNP [dm6]	A	G	4.822e^-5	0.388	INTERGENIC
2L	8523537	2L_8523537_SNP [dm3] 2L_8523537_SNP [dm6]	C	A	4.884e^-5	0.39	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2R	15669122	2R_15669122_SNP [dm3] 2R_19781617_SNP [dm6]	A	T	4.888e^-5	0.39	INTERGENIC
2R	12231191	2R_12231191_SNP [dm3] 2R_16343686_SNP [dm6]	T	A	4.984e^-5	0.396	UPSTREAM Nup62 & 1 other INTRON CG7997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	3072980	2L_3072980_SNP [dm3] 2L_3072980_SNP [dm6]	T	G	5.100e^-5	0.404	UPSTREAM toc INTRON toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11878215	2R_11878215_SNP [dm3] 2R_15990710_SNP [dm6]	T	C	5.168e^-5	0.407	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10848245	3L_10848245_DEL [dm3] 3L_10855145_DEL [dm6]	AACATGTAAAATACAAA...	A	5.232e^-5	0.41	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1235477	2L_1235477_SNP [dm3] 2L_1235477_SNP [dm6]	C	T	5.267e^-5	0.41	INTERGENIC
3L	10377578	3L_10377578_SNP [dm3] 3L_10384478_SNP [dm6]	A	C	5.280e^-5	0.41	INTERGENIC
3L	10349544	3L_10349544_SNP [dm3] 3L_10356444_SNP [dm6]	A	T	5.288e^-5	0.41	INTRON CR44327
2L	3500832	2L_3500832_SNP [dm3] 2L_3500832_SNP [dm6]	T	A	5.352e^-5	0.41	DOWNSTREAM tim INTRON tim
2R	14993373	2R_14993373_SNP [dm3] 2R_19105868_SNP [dm6]	A	T	5.353e^-5	0.41	INTRON 5-HT1A
2R	11878273	2R_11878273_SNP [dm3] 2R_15990768_SNP [dm6]	A	T	5.358e^-5	0.41	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8527155	2L_8527155_SNP [dm3] 2L_8527155_SNP [dm6]	C	T	5.402e^-5	0.412	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21360852	2L_21360852_SNP [dm3] 2L_21360852_SNP [dm6]	T	A	5.440e^-5	0.413	UPSTREAM dtr INTERGENIC
3R	14103134	3R_14103134_SNP [dm3] 3R_18277412_SNP [dm6]	G	A	5.473e^-5	0.414	DOWNSTREAM CG7142 INTRON eIF-1A
3R	20012931	3R_20012931_SNP [dm3] 3R_24187209_SNP [dm6]	C	A	5.571e^-5	0.42	DOWNSTREAM CG5515 INTRON CHORD	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12050050	3L_12050050_SNP [dm3] 3L_12056950_SNP [dm6]	C	T	5.597e^-5	0.42	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4142811	3L_4142811_SNP [dm3] 3L_4142811_SNP [dm6]	T	G	5.638e^-5	0.421	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
X	17746236	X_17746236_SNP [dm3] X_17852203_SNP [dm6]	C	A	5.699e^-5	0.423	NON_SYNONYMOUS_CODING CG32554 DOWNSTREAM CG6506 & 1 other	TF binding site mE1_TFBS_sens
2L	8529270	2L_8529270_SNP [dm3] 2L_8529270_SNP [dm6]	C	A	5.717e^-5	0.423	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
3L	13049767	3L_13049767_INS [dm3] 3L_13056667_INS [dm6]	A	AT	5.732e^-5	0.423	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3991884	2L_3991884_SNP [dm3] 2L_3991884_SNP [dm6]	C	A	5.772e^-5	0.424	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_Trl
3L	7097312	3L_7097312_SNP [dm3] 3L_7104212_SNP [dm6]	T	A	5.785e^-5	0.424	INTRON form3
2L	21363305	2L_21363305_SNP [dm3] 2L_21363305_SNP [dm6]	G	A	5.854e^-5	0.427	INTRON dtr
2L	21355372	2L_21355372_SNP [dm3] 2L_21355372_SNP [dm6]	T	A	6.030e^-5	0.438	INTRON Tsp39D
2L	3500830	2L_3500830_SNP [dm3] 2L_3500830_SNP [dm6]	G	T	6.084e^-5	0.439	DOWNSTREAM tim INTRON tim
3R	20508781	3R_20508781_SNP [dm3] 3R_24683059_SNP [dm6]	A	C	6.132e^-5	0.439	INTRON slo
3R	16726322	3R_16726322_SNP [dm3] 3R_20900600_SNP [dm6]	C	G	6.149e^-5	0.439	INTERGENIC
3R	26684707	3R_26684707_SNP [dm3] 3R_30858985_SNP [dm6]	C	T	6.175e^-5	0.439	INTERGENIC
3R	26387812	3R_26387812_SNP [dm3] 3R_30562090_SNP [dm6]	C	T	6.219e^-5	0.439	INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	7265576	3L_7265576_SNP [dm3] 3L_7272476_SNP [dm6]	G	A	6.240e^-5	0.439	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
2L	15458192	2L_15458192_SNP [dm3] 2L_15458192_SNP [dm6]	C	T	6.310e^-5	0.439	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15458391	2L_15458391_DEL [dm3] 2L_15458391_DEL [dm6]	TTCACCCGCATT...	T	6.310e^-5	0.439	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26389829	3R_26389829_SNP [dm3] 3R_30564107_SNP [dm6]	A	C	6.324e^-5	0.439	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	26700572	3R_26700572_INS [dm3] 3R_30874850_INS [dm6]	G	GATAG	6.352e^-5	0.439	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
2R	6526015	2R_6526015_SNP [dm3] 2R_10638510_SNP [dm6]	G	T	6.356e^-5	0.439	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
3L	12049992	3L_12049992_DEL [dm3] 3L_12056892_DEL [dm6]	ATCAG	T	6.365e^-5	0.439	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8568385	2L_8568385_SNP [dm3] 2L_8568385_SNP [dm6]	C	A	6.416e^-5	0.439	INTRON Sema-1a
2L	8568387	2L_8568387_SNP [dm3] 2L_8568387_SNP [dm6]	G	C	6.416e^-5	0.439	INTRON Sema-1a
2L	8526541	2L_8526541_SNP [dm3] 2L_8526541_SNP [dm6]	T	C	6.463e^-5	0.439	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others	TF binding site mE1_TFBS_cad
2L	6834476	2L_6834476_SNP [dm3] 2L_6834476_SNP [dm6]	T	C	6.489e^-5	0.439	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23268228	3R_23268228_SNP [dm3] 3R_27442506_SNP [dm6]	G	A	6.499e^-5	0.439	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
4	657523	4_657523_DEL [dm3] 4_636897_DEL [dm6]	GAACTGGCCATGTCCGTCTG...	G	6.504e^-5	0.439	UPSTREAM CR44028 INTRON CG9935	transposable element FlyBase
2L	3297684	2L_3297684_SNP [dm3] 2L_3297684_SNP [dm6]	T	C	6.509e^-5	0.439	INTRON CG9663
3R	20012928	3R_20012928_SNP [dm3] 3R_24187206_SNP [dm6]	C	T	6.512e^-5	0.439	DOWNSTREAM CG5515 INTRON CHORD	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8542043	3L_8542043_SNP [dm3] 3L_8548943_SNP [dm6]	T	A	6.538e^-5	0.44	INTRON rhea	TF binding site BDTNP1_TFBS_twi
2R	5705059	2R_5705059_SNP [dm3] 2R_9817554_SNP [dm6]	C	T	6.569e^-5	0.44	DOWNSTREAM lectin-46Cb INTRON CG1648 & 1 other
3R	20012920	3R_20012920_SNP [dm3] 3R_24187198_SNP [dm6]	T	A	6.677e^-5	0.444	DOWNSTREAM CG5515 INTRON CHORD	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16726331	3R_16726331_SNP [dm3] 3R_20900609_SNP [dm6]	T	C	6.716e^-5	0.444	INTERGENIC
3R	25562554	3R_25562554_SNP [dm3] 3R_29736832_SNP [dm6]	G	A	6.719e^-5	0.444	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5577269	2L_5577269_SNP [dm3] 2L_5577269_SNP [dm6]	T	A	6.731e^-5	0.444	INTERGENIC
2L	8537937	2L_8537937_SNP [dm3] 2L_8537937_SNP [dm6]	T	A	6.748e^-5	0.444	DOWNSTREAM CG17834 INTRON CG17834
2R	5714614	2R_5714614_SNP [dm3] 2R_9827109_SNP [dm6]	T	C	6.774e^-5	0.444	NON_SYNONYMOUS_CODING dila DOWNSTREAM hebe	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12528905	2L_12528905_SNP [dm3] 2L_12528905_SNP [dm6]	G	A	6.807e^-5	0.445	INTRON bun	TF binding site BDTNP1_TFBS_dl
3L	12050065	3L_12050065_SNP [dm3] 3L_12056965_SNP [dm6]	C	A	6.837e^-5	0.445	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12251907	2R_12251907_SNP [dm3] 2R_16364402_SNP [dm6]	T	A	6.900e^-5	0.447	START_GAINED CG15711 UTR_5_PRIME CG15711 UPSTREAM CG15711 DOWNSTREAM CG6262
2R	11878735	2R_11878735_SNP [dm3] 2R_15991230_SNP [dm6]	C	G	6.909e^-5	0.447	UTR_5_PRIME CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	13049785	3L_13049785_SNP [dm3] 3L_13056685_SNP [dm6]	C	G	6.969e^-5	0.448	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8512797	2L_8512797_SNP [dm3] 2L_8512797_SNP [dm6]	G	T	6.981e^-5	0.448	UPSTREAM CG13096 INTRON CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8568381	2L_8568381_SNP [dm3] 2L_8568381_SNP [dm6]	A	T	7.036e^-5	0.45	INTRON Sema-1a
2R	11879824	2R_11879824_SNP [dm3] 2R_15992319_SNP [dm6]	T	G	7.051e^-5	0.45	UTR_5_PRIME Pex11 UPSTREAM CG8320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	5777768	2R_5777768_DEL [dm3] 2R_9890263_DEL [dm6]	AGACCTTTAA	A	7.075e^-5	0.45	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
3L	10378012	3L_10378012_SNP [dm3] 3L_10384912_SNP [dm6]	A	G	7.105e^-5	0.45	INTERGENIC
2R	9165381	2R_9165381_SNP [dm3] 2R_13277876_SNP [dm6]	T	C	7.186e^-5	0.452	INTRON Dh31-R
3R	13466615	3R_13466615_SNP [dm3] 3R_17640893_SNP [dm6]	T	A	7.194e^-5	0.452	INTRON CG43175
3R	26389895	3R_26389895_SNP [dm3] 3R_30564173_SNP [dm6]	T	A	7.207e^-5	0.452	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	10377696	3L_10377696_DEL [dm3] 3L_10384596_DEL [dm6]	AA	A	7.291e^-5	0.456	INTERGENIC
2L	10703661	2L_10703661_SNP [dm3] 2L_10703661_SNP [dm6]	G	A	7.332e^-5	0.457	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
2L	8529408	2L_8529408_SNP [dm3] 2L_8529408_SNP [dm6]	G	A	7.365e^-5	0.457	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2L	13358799	2L_13358799_SNP [dm3] 2L_13358799_SNP [dm6]	T	C	7.434e^-5	0.46	INTERGENIC
2R	5790017	2R_5790017_SNP [dm3] 2R_9902512_SNP [dm6]	A	T	7.497e^-5	0.462	INTRON CG1441	TF binding site mE1_TFBS_cad
3R	9649487	3R_9649487_SNP [dm3] 3R_13823765_SNP [dm6]	C	A	7.511e^-5	0.462	INTERGENIC
3R	22790989	3R_22790989_SNP [dm3] 3R_26965267_SNP [dm6]	C	A	7.541e^-5	0.462	NON_SYNONYMOUS_CODING Gr97a UPSTREAM Tsp97E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	14914304	2L_14914304_SNP [dm3] 2L_14914304_SNP [dm6]	T	G	7.570e^-5	0.463	NON_SYNONYMOUS_CODING CG42313	TF binding site mE1_TFBS_HSA
2L	8510259	2L_8510259_SNP [dm3] 2L_8510259_SNP [dm6]	A	T	7.687e^-5	0.467	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18541370	X_18541370_SNP [dm3] X_18647337_SNP [dm6]	A	T	7.700e^-5	0.467	UTR_5_PRIME Rip11 UPSTREAM CG6540	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	22264819	X_22264819_SNP [dm3] X_22862983_SNP [dm6]	C	T	7.740e^-5	0.467	INTRON CG42346	TF binding site mE1_TFBS_HSA
3R	25266674	3R_25266674_MNP [dm3] 3R_29440952_MNP [dm6]	GCT	ATA	7.817e^-5	0.467	INTRON Ptp99A
2L	3502402	2L_3502402_SNP [dm3] 2L_3502402_SNP [dm6]	C	T	7.819e^-5	0.467	INTRON tim
3L	2580089	3L_2580089_SNP [dm3] 3L_2580089_SNP [dm6]	G	C	7.851e^-5	0.467	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1245080	2L_1245080_SNP [dm3] 2L_1245080_SNP [dm6]	G	A	7.898e^-5	0.467	INTERGENIC
X	22265314	X_22265314_SNP [dm3] X_22863478_SNP [dm6]	A	T	7.900e^-5	0.467	INTRON CG42346
2R	17272774	2R_17272774_SNP [dm3] 2R_21385269_SNP [dm6]	T	C	7.907e^-5	0.467	NON_SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_sens
2L	8531564	2L_8531564_SNP [dm3] 2L_8531564_SNP [dm6]	A	G	7.951e^-5	0.467	INTRON CG17834
2R	13023226	2R_13023226_SNP [dm3] 2R_17135721_SNP [dm6]	A	G	7.994e^-5	0.467	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
2L	8540435	2L_8540435_SNP [dm3] 2L_8540435_SNP [dm6]	C	A	8.000e^-5	0.467	INTRON CG17834
2L	8510267	2L_8510267_SNP [dm3] 2L_8510267_SNP [dm6]	C	T	8.015e^-5	0.467	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12528900	2L_12528900_INS [dm3] 2L_12528900_INS [dm6]	G	GCTAT	8.045e^-5	0.467	INTRON bun	TF binding site BDTNP1_TFBS_dl
2R	13603019	2R_13603019_SNP [dm3] 2R_17715514_SNP [dm6]	G	C	8.057e^-5	0.467	INTRON CG6424	TF binding site BDTNP1_TFBS_dl
2L	10704084	2L_10704084_SNP [dm3] 2L_10704084_SNP [dm6]	A	G	8.057e^-5	0.467	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2
3L	12050044	3L_12050044_SNP [dm3] 3L_12056944_SNP [dm6]	A	G	8.077e^-5	0.467	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26390325	3R_26390325_SNP [dm3] 3R_30564603_SNP [dm6]	G	C	8.096e^-5	0.467	INTRON tmod
3R	4519568	3R_4519568_SNP [dm3] 3R_8693846_SNP [dm6]	T	C	8.131e^-5	0.467	SYNONYMOUS_CODING hb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1228551	2L_1228551_SNP [dm3] 2L_1228551_SNP [dm6]	C	A	8.146e^-5	0.467	SYNONYMOUS_CODING CG42329
2L	15283702	2L_15283702_SNP [dm3] 2L_15283702_SNP [dm6]	G	A	8.265e^-5	0.468	INTERGENIC
3L	4144249	3L_4144249_SNP [dm3] 3L_4144249_SNP [dm6]	G	C	8.301e^-5	0.468	INTRON CG32260
3R	23474601	3R_23474601_SNP [dm3] 3R_27648879_SNP [dm6]	A	T	8.352e^-5	0.468	NON_SYNONYMOUS_CODING tau INTRON tau
2L	1235419	2L_1235419_SNP [dm3] 2L_1235419_SNP [dm6]	C	G	8.401e^-5	0.468	INTERGENIC
2R	13777414	2R_13777414_SNP [dm3] 2R_17889909_SNP [dm6]	C	G	8.414e^-5	0.468	UTR_5_PRIME PPO1 INTRON Elk
2R	14041460	2R_14041460_SNP [dm3] 2R_18153955_SNP [dm6]	G	T	8.414e^-5	0.468	UTR_3_PRIME adp DOWNSTREAM lolal	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15160751	2R_15160751_DEL [dm3] 2R_19273246_DEL [dm6]	GAA	G	8.414e^-5	0.468	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	15160757	2R_15160757_INS [dm3] 2R_19273252_INS [dm6]	C	CC	8.414e^-5	0.468	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	18411596	3L_18411596_SNP [dm3] 3L_18418496_SNP [dm6]	A	T	8.455e^-5	0.468	INTERGENIC
2L	8526190	2L_8526190_SNP [dm3] 2L_8526190_SNP [dm6]	T	A	8.502e^-5	0.468	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8526214	2L_8526214_SNP [dm3] 2L_8526214_SNP [dm6]	A	T	8.502e^-5	0.468	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
3L	3784275	3L_3784275_SNP [dm3] 3L_3784275_SNP [dm6]	G	T	8.585e^-5	0.468	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	22414383	3R_22414383_SNP [dm3] 3R_26588661_SNP [dm6]	A	C	8.618e^-5	0.468	DOWNSTREAM scrib INTRON scrib
2L	7097853	2L_7097853_INS [dm3] 2L_7097853_INS [dm6]	G	GGTGAGTAAAGCAGCAG...	8.651e^-5	0.468	DOWNSTREAM Pvf3 INTERGENIC
2L	10546024	2L_10546024_SNP [dm3] 2L_10546024_SNP [dm6]	C	G	8.654e^-5	0.468	SYNONYMOUS_CODING Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14288732	3L_14288732_DEL [dm3] 3L_14295632_DEL [dm6]	TGTT	T	8.687e^-5	0.468	INTRON fz
2R	11503981	2R_11503981_SNP [dm3] 2R_15616476_SNP [dm6]	G	A	8.738e^-5	0.468	INTRON CG42524
2R	15205290	2R_15205290_SNP [dm3] 2R_19317785_SNP [dm6]	T	C	8.738e^-5	0.468	INTRON Rgk1
2R	16160717	2R_16160717_SNP [dm3] 2R_20273212_SNP [dm6]	G	A	8.738e^-5	0.468	INTRON CG10444	TF binding site mE1_TFBS_cad
2L	8510302	2L_8510302_SNP [dm3] 2L_8510302_SNP [dm6]	C	G	8.808e^-5	0.468	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	26366112	3R_26366112_SNP [dm3] 3R_30540390_SNP [dm6]	T	A	8.818e^-5	0.468	INTRON tmod
2R	15205326	2R_15205326_SNP [dm3] 2R_19317821_SNP [dm6]	C	T	8.853e^-5	0.468	INTRON Rgk1
2R	15086523	2R_15086523_SNP [dm3] 2R_19199018_SNP [dm6]	G	C	8.875e^-5	0.468	INTRON hppy
2R	15758531	2R_15758531_SNP [dm3] 2R_19871026_SNP [dm6]	A	T	8.886e^-5	0.468	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	13778621	2R_13778621_SNP [dm3] 2R_17891116_SNP [dm6]	C	A	8.905e^-5	0.468	INTRON Elk
3L	7705127	3L_7705127_SNP [dm3] 3L_7712027_SNP [dm6]	T	G	8.917e^-5	0.468	INTRON CG32373 & 1 other
2L	8510361	2L_8510361_SNP [dm3] 2L_8510361_SNP [dm6]	C	A	8.919e^-5	0.468	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18062958	3L_18062958_SNP [dm3] 3L_18069858_SNP [dm6]	G	A	8.938e^-5	0.468	SYNONYMOUS_CODING CG44006 DOWNSTREAM CG44005
2R	16336629	2R_16336629_SNP [dm3] 2R_20449124_SNP [dm6]	G	C	8.939e^-5	0.468	INTRON CG12484	TF binding site mE1_TFBS_inv
2R	20022898	2R_20022898_SNP [dm3] 2R_24135375_SNP [dm6]	T	C	9.001e^-5	0.468	UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8 INTRON CG4065
2R	11264113	2R_11264113_SNP [dm3] 2R_15376608_SNP [dm6]	G	T	9.045e^-5	0.468	UPSTREAM CR43105 & 1 other DOWNSTREAM dup INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	22576804	3R_22576804_SNP [dm3] 3R_26751082_SNP [dm6]	A	G	9.057e^-5	0.468	INTERGENIC
3L	12463273	3L_12463273_SNP [dm3] 3L_12470173_SNP [dm6]	C	A	9.066e^-5	0.468	UPSTREAM CG32102 INTERGENIC
3L	13049777	3L_13049777_SNP [dm3] 3L_13056677_SNP [dm6]	A	G	9.077e^-5	0.468	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4144287	3L_4144287_SNP [dm3] 3L_4144287_SNP [dm6]	C	T	9.078e^-5	0.468	INTRON CG32260
3L	10361849	3L_10361849_SNP [dm3] 3L_10368749_SNP [dm6]	T	C	9.169e^-5	0.468	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2887670	2L_2887670_SNP [dm3] 2L_2887670_SNP [dm6]	T	C	9.184e^-5	0.468	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	9161604	3L_9161604_SNP [dm3] 3L_9168504_SNP [dm6]	T	G	9.194e^-5	0.468	INTRON Rdl
2R	13572305	2R_13572305_SNP [dm3] 2R_17684800_SNP [dm6]	A	G	9.218e^-5	0.468	UPSTREAM CG42561 INTRON HPS4	TF binding site BDTNP1_TFBS_hb mE1_TFBS_hkb
2L	1235884	2L_1235884_SNP [dm3] 2L_1235884_SNP [dm6]	A	T	9.219e^-5	0.468	INTERGENIC
2R	5717075	2R_5717075_SNP [dm3] 2R_9829570_SNP [dm6]	G	A	9.226e^-5	0.468	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14871689	2L_14871689_SNP [dm3] 2L_14871689_SNP [dm6]	G	A	9.237e^-5	0.468	SYNONYMOUS_CODING CG4480
2R	5763605	2R_5763605_SNP [dm3] 2R_9876100_SNP [dm6]	T	G	9.250e^-5	0.468	UTR_3_PRIME CG12744 DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7450562	2L_7450562_INS [dm3] 2L_7450562_INS [dm6]	A	AACTGTTGATACCCAGA...	9.265e^-5	0.468	UTR_5_PRIME santa-maria INTRON santa-maria
3R	23799554	3R_23799554_SNP [dm3] 3R_27973832_SNP [dm6]	A	T	9.288e^-5	0.468	INTRON betaTub97EF
2R	11264129	2R_11264129_SNP [dm3] 2R_15376624_SNP [dm6]	A	C	9.328e^-5	0.469	UTR_3_PRIME dup UPSTREAM CR43105 & 1 other	TF binding site BDTNP1_TFBS_hb
2L	3392848	2L_3392848_SNP [dm3] 2L_3392848_SNP [dm6]	C	A	9.416e^-5	0.471	INTERGENIC
2L	21340373	2L_21340373_SNP [dm3] 2L_21340373_SNP [dm6]	G	A	9.452e^-5	0.471	UTR_3_PRIME dimm
2L	8531546	2L_8531546_SNP [dm3] 2L_8531546_SNP [dm6]	G	A	9.452e^-5	0.471	INTRON CG17834
2L	16543887	2L_16543887_SNP [dm3] 2L_16543887_SNP [dm6]	C	A	9.464e^-5	0.471	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12050003	3L_12050003_SNP [dm3] 3L_12056903_SNP [dm6]	T	A	9.486e^-5	0.471	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8527335	2L_8527335_SNP [dm3] 2L_8527335_SNP [dm6]	T	C	9.524e^-5	0.471	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4143536	3L_4143536_SNP [dm3] 3L_4143536_SNP [dm6]	G	A	9.548e^-5	0.471	SYNONYMOUS_CODING CG32260 INTRON CG32260
2L	16543938	2L_16543938_SNP [dm3] 2L_16543938_SNP [dm6]	A	G	9.600e^-5	0.473	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	26389955	3R_26389955_SNP [dm3] 3R_30564233_SNP [dm6]	C	T	9.662e^-5	0.474	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	6304373	2L_6304373_SNP [dm3] 2L_6304373_SNP [dm6]	C	A	9.785e^-5	0.478	INTRON Ddr
3L	17829248	3L_17829248_SNP [dm3] 3L_17836148_SNP [dm6]	A	G	9.788e^-5	0.478	UPSTREAM CG32189 INTRON Grd	transposable element FlyBase
2R	15205344	2R_15205344_SNP [dm3] 2R_19317839_SNP [dm6]	G	C	9.850e^-5	0.48	INTRON Rgk1
3R	26907593	3R_26907593_DEL [dm3] 3R_31081871_DEL [dm6]	CTTATAAT	A	9.881e^-5	0.48	INTRON Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26387922	3R_26387922_SNP [dm3] 3R_30562200_SNP [dm6]	C	T	9.947e^-5	0.482	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	8529325	2L_8529325_SNP [dm3] 2L_8529325_SNP [dm6]	G	T	9.994e^-5	0.483	START_GAINED CG17834 UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2R	8458808	2R_8458808_SNP [dm3] 2R_12571303_SNP [dm6]	T	A	1.005e^-4	0.483	UPSTREAM ClC-b INTRON stil
2L	3505633	2L_3505633_SNP [dm3] 2L_3505633_SNP [dm6]	T	G	1.011e^-4	0.483	INTRON tim	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3920070	3L_3920070_SNP [dm3] 3L_3920070_SNP [dm6]	T	A	1.011e^-4	0.483	INTRON Eip63F-1
2R	5735754	2R_5735754_SNP [dm3] 2R_9848249_SNP [dm6]	C	T	1.014e^-4	0.483	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	26937375	3R_26937375_SNP [dm3] 3R_31111653_SNP [dm6]	T	A	1.016e^-4	0.483	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10377660	3L_10377660_SNP [dm3] 3L_10384560_SNP [dm6]	C	G	1.017e^-4	0.483	INTERGENIC
2R	8468002	2R_8468002_SNP [dm3] 2R_12580497_SNP [dm6]	A	T	1.019e^-4	0.483	SYNONYMOUS_CODING Sin3A
2R	13645041	2R_13645041_SNP [dm3] 2R_17757536_SNP [dm6]	G	A	1.022e^-4	0.483	UTR_5_PRIME HLH54F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12050085	3L_12050085_SNP [dm3] 3L_12056985_SNP [dm6]	G	A	1.026e^-4	0.483	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	22266798	X_22266798_DEL [dm3] X_22864962_DEL [dm6]	CT	C	1.028e^-4	0.483	INTRON CG42346
2R	5785899	2R_5785899_SNP [dm3] 2R_9898394_SNP [dm6]	A	C	1.028e^-4	0.483	NON_SYNONYMOUS_CODING CG30007 DOWNSTREAM CG1441 & 1 other
3L	7704825	3L_7704825_SNP [dm3] 3L_7711725_SNP [dm6]	A	C	1.033e^-4	0.484	INTRON CG32373 & 1 other
2R	9172502	2R_9172502_SNP [dm3] 2R_13284997_SNP [dm6]	C	A	1.035e^-4	0.484	INTRON Dh31-R
2L	3501369	2L_3501369_SNP [dm3] 2L_3501369_SNP [dm6]	C	A	1.047e^-4	0.485	SYNONYMOUS_CODING tim
3L	9412857	3L_9412857_DEL [dm3] 3L_9419757_DEL [dm6]	GATATGG	G	1.048e^-4	0.485	UPSTREAM CG3967 INTRON CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	4825018	X_4825018_SNP [dm3] X_4930985_SNP [dm6]	C	A	1.050e^-4	0.485	UTR_5_PRIME CG44774 UPSTREAM CG44774 INTRON CG44774	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22586126	3R_22586126_SNP [dm3] 3R_26760404_SNP [dm6]	T	G	1.050e^-4	0.485	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26388745	3R_26388745_SNP [dm3] 3R_30563023_SNP [dm6]	A	T	1.052e^-4	0.485	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	22265065	X_22265065_SNP [dm3] X_22863229_SNP [dm6]	C	G	1.053e^-4	0.485	INTRON CG42346
3L	18021584	3L_18021584_SNP [dm3] 3L_18028484_SNP [dm6]	T	A	1.058e^-4	0.485	INTRON Eip75B
2R	15676669	2R_15676669_SNP [dm3] 2R_19789164_SNP [dm6]	T	C	1.062e^-4	0.485	EXON CR45231
2L	16544079	2L_16544079_INS [dm3] 2L_16544079_INS [dm6]	A	AATAA	1.063e^-4	0.485	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	15431405	X_15431405_SNP [dm3] X_15537372_SNP [dm6]	G	A	1.065e^-4	0.485	INTRON Ac13E
2L	2887519	2L_2887519_SNP [dm3] 2L_2887519_SNP [dm6]	T	G	1.071e^-4	0.485	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	9827403	2L_9827403_SNP [dm3] 2L_9827403_SNP [dm6]	T	A	1.075e^-4	0.485	INTRON nAChRalpha6
X	18538006	X_18538006_SNP [dm3] X_18643973_SNP [dm6]	G	A	1.076e^-4	0.485	INTRON Rip11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	11220968	2R_11220968_SNP [dm3] 2R_15333463_SNP [dm6]	G	A	1.078e^-4	0.485	INTRON Hr51
2R	5722454	2R_5722454_SNP [dm3] 2R_9834949_SNP [dm6]	T	A	1.081e^-4	0.485	INTRON hebe
3L	1487313	3L_1487313_SNP [dm3] 3L_1487313_SNP [dm6]	T	G	1.082e^-4	0.485	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3R	25817054	3R_25817054_SNP [dm3] 3R_29991332_SNP [dm6]	G	A	1.083e^-4	0.485	UTR_3_PRIME Acph-1 DOWNSTREAM CG7896	TF binding site mE1_TFBS_cad
2R	5868839	2R_5868839_SNP [dm3] 2R_9981334_SNP [dm6]	T	G	1.084e^-4	0.485	DOWNSTREAM eve INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	4881532	2L_4881532_SNP [dm3] 2L_4881532_SNP [dm6]	C	T	1.086e^-4	0.485	SYNONYMOUS_CODING Cf2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3298577	2L_3298577_SNP [dm3] 2L_3298577_SNP [dm6]	T	G	1.089e^-4	0.485	INTRON CG9663	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10377566	3L_10377566_SNP [dm3] 3L_10384466_SNP [dm6]	A	C	1.095e^-4	0.487	INTERGENIC
X	22266779	X_22266779_SNP [dm3] X_22864943_SNP [dm6]	A	C	1.102e^-4	0.488	INTRON CG42346
3R	25562517	3R_25562517_SNP [dm3] 3R_29736795_SNP [dm6]	T	A	1.107e^-4	0.488	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	22433397	3R_22433397_SNP [dm3] 3R_26607675_SNP [dm6]	A	T	1.108e^-4	0.488	EXON CR44951
2L	15458384	2L_15458384_SNP [dm3] 2L_15458384_SNP [dm6]	T	C	1.109e^-4	0.488	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7731126	3L_7731126_SNP [dm3] 3L_7738026_SNP [dm6]	C	T	1.115e^-4	0.489	INTRON CG32373 & 1 other
2L	8508431	2L_8508431_SNP [dm3] 2L_8508431_SNP [dm6]	A	T	1.116e^-4	0.489	DOWNSTREAM CG13096 INTERGENIC
3L	7097309	3L_7097309_SNP [dm3] 3L_7104209_SNP [dm6]	C	G	1.122e^-4	0.491	INTRON form3
2R	15361948	2R_15361948_SNP [dm3] 2R_19474443_SNP [dm6]	T	C	1.133e^-4	0.494	INTRON par-1
2L	8517405	2L_8517405_SNP [dm3] 2L_8517405_SNP [dm6]	G	T	1.143e^-4	0.497	UPSTREAM CG13090 & 1 other DOWNSTREAM PIG-U INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	26700538	3R_26700538_DEL [dm3] 3R_30874816_DEL [dm6]	TT	G	1.147e^-4	0.498	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
3R	20568859	3R_20568859_SNP [dm3] 3R_24743137_SNP [dm6]	T	G	1.149e^-4	0.498	INTRON tok
2R	11881999	2R_11881999_SNP [dm3] 2R_15994494_SNP [dm6]	C	T	1.161e^-4	0.501	SYNONYMOUS_CODING ATPCL DOWNSTREAM CG8320
2L	10032454	2L_10032454_SNP [dm3] 2L_10032454_SNP [dm6]	G	A	1.164e^-4	0.501	UPSTREAM obst-B INTERGENIC	TF binding site mE1_TFBS_Trl
2L	21593132	2L_21593132_SNP [dm3] 2L_21593132_SNP [dm6]	A	G	1.169e^-4	0.501	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3R	26433827	3R_26433827_SNP [dm3] 3R_30608105_SNP [dm6]	T	G	1.170e^-4	0.501	SYNONYMOUS_CODING CG31016
2L	8762264	2L_8762264_SNP [dm3] 2L_8762264_SNP [dm6]	T	C	1.170e^-4	0.501	INTERGENIC	TF binding site mE1_TFBS_cad
X	22263140	X_22263140_SNP [dm3] X_22861304_SNP [dm6]	C	T	1.175e^-4	0.501	INTRON CG42346	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	26129324	3R_26129324_SNP [dm3] 3R_30303602_SNP [dm6]	T	A	1.177e^-4	0.501	INTRON hdc
3L	7705207	3L_7705207_SNP [dm3] 3L_7712107_SNP [dm6]	G	T	1.181e^-4	0.501	INTRON CG32373 & 1 other
2L	4832264	2L_4832264_SNP [dm3] 2L_4832264_SNP [dm6]	A	G	1.183e^-4	0.501	SYNONYMOUS_CODING Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14914032	2L_14914032_SNP [dm3] 2L_14914032_SNP [dm6]	C	G	1.185e^-4	0.501	INTRON CG42313
2R	12808661	2R_12808661_SNP [dm3] 2R_16921156_SNP [dm6]	T	G	1.186e^-4	0.501	INTERGENIC
2R	11795550	2R_11795550_SNP [dm3] 2R_15908045_SNP [dm6]	G	A	1.196e^-4	0.504	INTRON sli
X	18541368	X_18541368_SNP [dm3] X_18647335_SNP [dm6]	A	T	1.204e^-4	0.505	UTR_5_PRIME Rip11 UPSTREAM CG6540	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	8506084	2L_8506084_SNP [dm3] 2L_8506084_SNP [dm6]	A	T	1.204e^-4	0.505	INTRON Dh31
3R	16531964	3R_16531964_SNP [dm3] 3R_20706242_SNP [dm6]	C	G	1.209e^-4	0.506	UTR_5_PRIME Oamb INTRON Oamb
3R	16763317	3R_16763317_SNP [dm3] 3R_20937595_SNP [dm6]	G	A	1.229e^-4	0.511	INTRON CG31191
3L	17829802	3L_17829802_DEL [dm3] 3L_17836702_DEL [dm6]	AACTGA	A	1.231e^-4	0.511	INTRON Grd
2R	6857028	2R_6857028_SNP [dm3] 2R_10969523_SNP [dm6]	G	A	1.238e^-4	0.511	INTERGENIC
3R	24350631	3R_24350631_DEL [dm3] 3R_28524909_DEL [dm6]	GAGG	G	1.240e^-4	0.511	CODON_DELETION Ppn INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9098562	2L_9098562_SNP [dm3] 2L_9098562_SNP [dm6]	C	A	1.241e^-4	0.511	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
3L	12050127	3L_12050127_SNP [dm3] 3L_12057027_SNP [dm6]	T	A	1.242e^-4	0.511	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7705104	3L_7705104_SNP [dm3] 3L_7712004_SNP [dm6]	G	A	1.246e^-4	0.511	INTRON CG32373 & 1 other
3R	26389923	3R_26389923_SNP [dm3] 3R_30564201_SNP [dm6]	C	G	1.248e^-4	0.511	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	4575703	2L_4575703_SNP [dm3] 2L_4575703_SNP [dm6]	A	G	1.248e^-4	0.511	INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16115680	2L_16115680_SNP [dm3] 2L_16115680_SNP [dm6]	G	A	1.253e^-4	0.511	INTERGENIC
2R	5714577	2R_5714577_INS [dm3] 2R_9827072_INS [dm6]	G	GTA	1.253e^-4	0.511	FRAME_SHIFT dila INTRON dila	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13466657	3R_13466657_SNP [dm3] 3R_17640935_SNP [dm6]	C	T	1.257e^-4	0.511	INTRON CG43175
2L	10700305	2L_10700305_SNP [dm3] 2L_10700305_SNP [dm6]	C	T	1.259e^-4	0.511	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21292330	2L_21292330_SNP [dm3] 2L_21292330_SNP [dm6]	T	C	1.270e^-4	0.511	SYNONYMOUS_CODING Gr39a INTRON Mio & 1 other
2L	21307615	2L_21307615_SNP [dm3] 2L_21307615_SNP [dm6]	C	A	1.270e^-4	0.511	INTRON Mio
2L	21309678	2L_21309678_SNP [dm3] 2L_21309678_SNP [dm6]	T	C	1.270e^-4	0.511	UTR_5_PRIME Mio UPSTREAM Mio INTRON Mio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	12050039	3L_12050039_INS [dm3] 3L_12056939_INS [dm6]	TT	AAG	1.274e^-4	0.511	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21945796	3R_21945796_SNP [dm3] 3R_26120074_SNP [dm6]	A	C	1.275e^-4	0.511	INTRON CG31324
3R	21397686	3R_21397686_DEL [dm3] 3R_25571964_DEL [dm6]	ACAGTGAAGCTAGTAA...	A	1.278e^-4	0.511	INTRON msi
3L	12050010	3L_12050010_SNP [dm3] 3L_12056910_SNP [dm6]	A	C	1.281e^-4	0.511	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12050072	3L_12050072_SNP [dm3] 3L_12056972_SNP [dm6]	T	C	1.281e^-4	0.511	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8510360	2L_8510360_SNP [dm3] 2L_8510360_SNP [dm6]	T	A	1.283e^-4	0.511	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16946944	3R_16946944_SNP [dm3] 3R_21121222_SNP [dm6]	G	A	1.284e^-4	0.511	SPLICE_SITE_REGION slmb INTRON slmb
3R	23283753	3R_23283753_DEL [dm3] 3R_27458031_DEL [dm6]	AACCGAAAA	A	1.287e^-4	0.512	INTERGENIC
2L	9827465	2L_9827465_SNP [dm3] 2L_9827465_SNP [dm6]	A	C	1.293e^-4	0.513	INTRON nAChRalpha6
3R	25862485	3R_25862485_SNP [dm3] 3R_30036763_SNP [dm6]	C	T	1.296e^-4	0.513	SYNONYMOUS_CODING CG7928 DOWNSTREAM ocn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	13193426	2L_13193426_SNP [dm3] 2L_13193426_SNP [dm6]	G	T	1.300e^-4	0.513	INTRON Edem2	TF binding site mE1_TFBS_cad
3R	23484167	3R_23484167_SNP [dm3] 3R_27658445_SNP [dm6]	A	C	1.301e^-4	0.513	INTRON Mlc1	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2R	15983331	2R_15983331_SNP [dm3] 2R_20095826_SNP [dm6]	G	A	1.313e^-4	0.514	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21945895	3R_21945895_SNP [dm3] 3R_26120173_SNP [dm6]	T	G	1.313e^-4	0.514	INTRON CG31324
2L	8539516	2L_8539516_SNP [dm3] 2L_8539516_SNP [dm6]	C	T	1.314e^-4	0.514	INTRON CG17834
2R	13920115	2R_13920115_SNP [dm3] 2R_18032610_SNP [dm6]	T	A	1.318e^-4	0.514	INTERGENIC
3L	8880104	3L_8880104_SNP [dm3] 3L_8887004_SNP [dm6]	T	C	1.322e^-4	0.514	INTRON dally
3R	14082550	3R_14082550_SNP [dm3] 3R_18256828_SNP [dm6]	T	G	1.331e^-4	0.514	NON_SYNONYMOUS_CODING Tgs1 UTR_3_PRIME moi
2L	8510192	2L_8510192_DEL [dm3] 2L_8510192_DEL [dm6]	AGGCAGTGGTATTGCAAATT...	A	1.334e^-4	0.514	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8455691	2R_8455691_SNP [dm3] 2R_12568186_SNP [dm6]	A	G	1.335e^-4	0.514	NON_SYNONYMOUS_CODING Cyp301a1 DOWNSTREAM Ak6
3R	25416680	3R_25416680_DEL [dm3] 3R_29590958_DEL [dm6]	AGT	A	1.338e^-4	0.514	UPSTREAM alph & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	11881285	2R_11881285_SNP [dm3] 2R_15993780_SNP [dm6]	G	A	1.340e^-4	0.514	UTR_3_PRIME ATPCL DOWNSTREAM ATPCL & 1 other
2R	11188748	2R_11188748_SNP [dm3] 2R_15301243_SNP [dm6]	C	A	1.342e^-4	0.514	INTRON Trpm
3L	4579529	3L_4579529_SNP [dm3] 3L_4579529_SNP [dm6]	T	C	1.343e^-4	0.514	INTRON CG42540
3R	20012921	3R_20012921_DEL [dm3] 3R_24187199_DEL [dm6]	TTAAAA	T	1.344e^-4	0.514	DOWNSTREAM CG5515 INTRON CHORD	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12195855	3L_12195855_SNP [dm3] 3L_12202755_SNP [dm6]	C	T	1.344e^-4	0.514	INTRON Adk1
2L	14187174	2L_14187174_SNP [dm3] 2L_14187174_SNP [dm6]	G	A	1.347e^-4	0.515	INTRON Dyrk2	TF binding site mE1_TFBS_cad
2L	8507887	2L_8507887_SNP [dm3] 2L_8507887_SNP [dm6]	G	T	1.367e^-4	0.516	INTERGENIC
X	5164281	X_5164281_SNP [dm3] X_5270248_SNP [dm6]	A	G	1.370e^-4	0.516	INTERGENIC
2R	11187527	2R_11187527_SNP [dm3] 2R_15300022_SNP [dm6]	C	T	1.375e^-4	0.516	INTRON Trpm
3R	9386354	3R_9386354_SNP [dm3] 3R_13560632_SNP [dm6]	T	A	1.376e^-4	0.516	INTERGENIC
2L	8533835	2L_8533835_SNP [dm3] 2L_8533835_SNP [dm6]	G	C	1.377e^-4	0.516	INTRON CG17834	TF binding site mE1_TFBS_cad
3L	4572019	3L_4572019_SNP [dm3] 3L_4572019_SNP [dm6]	C	T	1.378e^-4	0.516	INTRON CG42540	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8510271	2L_8510271_SNP [dm3] 2L_8510271_SNP [dm6]	A	G	1.380e^-4	0.516	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	21018743	2R_21018743_DEL [dm3] 2R_25131220_DEL [dm6]	GCCG	G	1.381e^-4	0.516	INTRON lov
2R	11323037	2R_11323037_SNP [dm3] 2R_15435532_SNP [dm6]	T	G	1.383e^-4	0.516	INTRON CG43729
3R	23278955	3R_23278955_SNP [dm3] 3R_27453233_SNP [dm6]	G	C	1.387e^-4	0.516	INTERGENIC
2L	1627280	2L_1627280_SNP [dm3] 2L_1627280_SNP [dm6]	T	C	1.387e^-4	0.516	INTERGENIC
X	21062308	X_21062308_SNP [dm3] X_21191281_SNP [dm6]	G	T	1.387e^-4	0.516	INTERGENIC	transposable element FlyBase
2L	2184885	2L_2184885_SNP [dm3] 2L_2184885_SNP [dm6]	A	T	1.391e^-4	0.516	EXON CR43751	regulatory region REDfly_CRMs
3L	4891182	3L_4891182_SNP [dm3] 3L_4891182_SNP [dm6]	A	T	1.391e^-4	0.516	SYNONYMOUS_CODING CG17150
2L	15458068	2L_15458068_SNP [dm3] 2L_15458068_SNP [dm6]	T	G	1.395e^-4	0.516	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	26588967	3R_26588967_SNP [dm3] 3R_30763245_SNP [dm6]	C	G	1.397e^-4	0.516	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	22265098	X_22265098_SNP [dm3] X_22863262_SNP [dm6]	A	G	1.399e^-4	0.516	INTRON CG42346
2L	1219417	2L_1219417_SNP [dm3] 2L_1219417_SNP [dm6]	A	G	1.403e^-4	0.516	NON_SYNONYMOUS_CODING CG42329	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12050013	3L_12050013_SNP [dm3] 3L_12056913_SNP [dm6]	C	T	1.404e^-4	0.516	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20840514	X_20840514_SNP [dm3] X_20969487_SNP [dm6]	C	T	1.415e^-4	0.516	INTERGENIC
3R	24121146	3R_24121146_SNP [dm3] 3R_28295424_SNP [dm6]	T	G	1.420e^-4	0.516	UPSTREAM CR44229 DOWNSTREAM CG17856 INTERGENIC
2R	20022867	2R_20022867_SNP [dm3] 2R_24135344_SNP [dm6]	T	C	1.429e^-4	0.516	SYNONYMOUS_CODING CG4065 UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8
2L	4929676	2L_4929676_SNP [dm3] 2L_4929676_SNP [dm6]	A	G	1.434e^-4	0.516	INTRON hoe1
2R	7359162	2R_7359162_SNP [dm3] 2R_11471657_SNP [dm6]	G	T	1.434e^-4	0.516	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15484962	3R_15484962_SNP [dm3] 3R_19659240_SNP [dm6]	C	T	1.436e^-4	0.516	UPSTREAM ort INTERGENIC
3R	23484166	3R_23484166_SNP [dm3] 3R_27658444_SNP [dm6]	T	G	1.439e^-4	0.516	INTRON Mlc1	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2L	13057951	2L_13057951_SNP [dm3] 2L_13057951_SNP [dm6]	A	G	1.445e^-4	0.516	INTRON CG9932
2L	14187056	2L_14187056_SNP [dm3] 2L_14187056_SNP [dm6]	C	T	1.447e^-4	0.516	SYNONYMOUS_CODING Dyrk2	TF binding site mE1_TFBS_cad
3L	12050114	3L_12050114_SNP [dm3] 3L_12057014_SNP [dm6]	T	C	1.448e^-4	0.516	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12050022	3L_12050022_SNP [dm3] 3L_12056922_SNP [dm6]	T	G	1.449e^-4	0.516	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15260635	2L_15260635_SNP [dm3] 2L_15260635_SNP [dm6]	T	A	1.449e^-4	0.516	DOWNSTREAM yuri INTRON yuri
2R	11881600	2R_11881600_SNP [dm3] 2R_15994095_SNP [dm6]	G	T	1.450e^-4	0.516	UTR_3_PRIME ATPCL DOWNSTREAM CG8320
3R	26066816	3R_26066816_SNP [dm3] 3R_30241094_SNP [dm6]	T	A	1.452e^-4	0.516	DOWNSTREAM CG9737 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19147117	2L_19147117_SNP [dm3] 2L_19147117_SNP [dm6]	T	G	1.454e^-4	0.516	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21397677	3R_21397677_SNP [dm3] 3R_25571955_SNP [dm6]	G	A	1.456e^-4	0.516	INTRON msi
3R	15462287	3R_15462287_SNP [dm3] 3R_19636565_SNP [dm6]	C	T	1.456e^-4	0.516	NON_SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3L	10377711	3L_10377711_SNP [dm3] 3L_10384611_SNP [dm6]	T	C	1.461e^-4	0.516	INTERGENIC
2L	12528896	2L_12528896_INS [dm3] 2L_12528896_INS [dm6]	A	AATTCG	1.465e^-4	0.516	INTRON bun	TF binding site BDTNP1_TFBS_dl
2R	10201246	2R_10201246_SNP [dm3] 2R_14313741_SNP [dm6]	G	C	1.469e^-4	0.516	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8265299	3L_8265299_SNP [dm3] 3L_8272199_SNP [dm6]	G	T	1.470e^-4	0.516	INTRON Dscam4	TF binding site mE1_TFBS_cad
2R	8458938	2R_8458938_SNP [dm3] 2R_12571433_SNP [dm6]	G	A	1.473e^-4	0.516	SYNONYMOUS_CODING stil UPSTREAM ClC-b
2L	1228294	2L_1228294_SNP [dm3] 2L_1228294_SNP [dm6]	C	A	1.476e^-4	0.516	SYNONYMOUS_CODING CG42329
3L	18304679	3L_18304679_SNP [dm3] 3L_18311579_SNP [dm6]	T	A	1.477e^-4	0.516	INTERGENIC
3R	15801003	3R_15801003_SNP [dm3] 3R_19975281_SNP [dm6]	C	A	1.478e^-4	0.516	NON_SYNONYMOUS_CODING CG31213 INTRON Hs6st
3R	18923054	3R_18923054_SNP [dm3] 3R_23097332_SNP [dm6]	G	C	1.478e^-4	0.516	UPSTREAM CG6733 DOWNSTREAM CG17109 INTRON CG13830	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7531919	2L_7531919_SNP [dm3] 2L_7531919_SNP [dm6]	C	A	1.481e^-4	0.516	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8112862	3L_8112862_SNP [dm3] 3L_8119762_SNP [dm6]	G	A	1.481e^-4	0.516	SYNONYMOUS_CODING msk
2L	8508450	2L_8508450_SNP [dm3] 2L_8508450_SNP [dm6]	A	C	1.485e^-4	0.516	DOWNSTREAM CG13096 INTERGENIC
3R	26388569	3R_26388569_SNP [dm3] 3R_30562847_SNP [dm6]	T	A	1.486e^-4	0.516	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	4579202	3L_4579202_SNP [dm3] 3L_4579202_SNP [dm6]	A	T	1.497e^-4	0.516	INTRON CG42540
3R	16947067	3R_16947067_DEL [dm3] 3R_21121345_DEL [dm6]	TATAAATA	GCGC	1.510e^-4	0.516	INTRON slmb
3L	13049782	3L_13049782_SNP [dm3] 3L_13056682_SNP [dm6]	A	T	1.511e^-4	0.516	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8880139	3L_8880139_DEL [dm3] 3L_8887039_DEL [dm6]	TC	A	1.511e^-4	0.516	INTRON dally
2L	19214969	2L_19214969_SNP [dm3] 2L_19214969_SNP [dm6]	T	A	1.512e^-4	0.516	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8507338	2L_8507338_SNP [dm3] 2L_8507338_SNP [dm6]	G	C	1.512e^-4	0.516	UPSTREAM Dh31 INTERGENIC
3L	18304678	3L_18304678_SNP [dm3] 3L_18311578_SNP [dm6]	A	G	1.515e^-4	0.516	INTERGENIC
2R	2667443	2R_2667443_SNP [dm3] 2R_6779938_SNP [dm6]	C	G	1.517e^-4	0.516	NON_SYNONYMOUS_CODING Cyp6a2 INTRON Epac	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	22586216	3R_22586216_SNP [dm3] 3R_26760494_SNP [dm6]	G	C	1.518e^-4	0.516	INTERGENIC
2L	15885756	2L_15885756_SNP [dm3] 2L_15885756_SNP [dm6]	C	T	1.519e^-4	0.516	INTERGENIC
3L	12465784	3L_12465784_SNP [dm3] 3L_12472684_SNP [dm6]	G	T	1.527e^-4	0.516	INTRON CG10616
2L	8111229	2L_8111229_SNP [dm3] 2L_8111229_SNP [dm6]	G	A	1.527e^-4	0.516	UTR_3_PRIME Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8569972	2L_8569972_SNP [dm3] 2L_8569972_SNP [dm6]	C	A	1.529e^-4	0.516	UPSTREAM tRNA:CR31895 INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3500823	2L_3500823_SNP [dm3] 2L_3500823_SNP [dm6]	T	A	1.530e^-4	0.516	DOWNSTREAM tim INTRON tim
3R	26700558	3R_26700558_SNP [dm3] 3R_30874836_SNP [dm6]	A	T	1.533e^-4	0.516	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
2R	11795376	2R_11795376_SNP [dm3] 2R_15907871_SNP [dm6]	G	C	1.537e^-4	0.516	INTRON sli
3R	23276022	3R_23276022_SNP [dm3] 3R_27450300_SNP [dm6]	C	G	1.538e^-4	0.516	INTERGENIC
3R	26700569	3R_26700569_SNP [dm3] 3R_30874847_SNP [dm6]	C	A	1.541e^-4	0.516	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
2R	16571353	2R_16571353_SNP [dm3] 2R_20683848_SNP [dm6]	G	A	1.541e^-4	0.516	INTERGENIC
2L	10032549	2L_10032549_SNP [dm3] 2L_10032549_SNP [dm6]	A	G	1.543e^-4	0.516	UPSTREAM obst-B INTERGENIC	TF binding site mE1_TFBS_Trl
2L	21364882	2L_21364882_SNP [dm3] 2L_21364882_SNP [dm6]	T	G	1.545e^-4	0.516	NON_SYNONYMOUS_CODING dtr	TF binding site mE1_TFBS_sens
3R	12204990	3R_12204990_SNP [dm3] 3R_16379268_SNP [dm6]	C	T	1.566e^-4	0.522	INTRON ss
3R	15126558	3R_15126558_SNP [dm3] 3R_19300836_SNP [dm6]	T	C	1.567e^-4	0.522	INTERGENIC
2R	11879194	2R_11879194_SNP [dm3] 2R_15991689_SNP [dm6]	C	T	1.570e^-4	0.522	SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	8457818	2R_8457818_SNP [dm3] 2R_12570313_SNP [dm6]	C	T	1.576e^-4	0.522	UPSTREAM stil & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8522146	3L_8522146_SNP [dm3] 3L_8529046_SNP [dm6]	T	A	1.576e^-4	0.522	INTRON foi
2L	14802330	2L_14802330_SNP [dm3] 2L_14802330_SNP [dm6]	A	G	1.579e^-4	0.522	UPSTREAM CG33308 INTERGENIC
3L	8880121	3L_8880121_SNP [dm3] 3L_8887021_SNP [dm6]	A	G	1.580e^-4	0.522	INTRON dally
2L	1237433	2L_1237433_INS [dm3] 2L_1237433_INS [dm6]	T	TGCGAAGGTAGTTGTTAT...	1.584e^-4	0.522	INTERGENIC
3R	18331492	3R_18331492_SNP [dm3] 3R_22505770_SNP [dm6]	C	T	1.586e^-4	0.522	INTRON Octbeta1R
3R	14458024	3R_14458024_SNP [dm3] 3R_18632302_SNP [dm6]	C	A	1.588e^-4	0.522	INTRON qin & 1 other
2R	15600581	2R_15600581_SNP [dm3] 2R_19713076_SNP [dm6]	T	C	1.594e^-4	0.523	UPSTREAM Obp56f & 2 others DOWNSTREAM Obp56e INTERGENIC
2L	3500836	2L_3500836_INS [dm3] 2L_3500836_INS [dm6]	A	AACTATGTGTACATTGCGCA...	1.608e^-4	0.526	DOWNSTREAM tim INTRON tim
X	11352197	X_11352197_SNP [dm3] X_11458164_SNP [dm6]	A	C	1.618e^-4	0.528	INTRON HP5
3L	8687554	3L_8687554_SNP [dm3] 3L_8694454_SNP [dm6]	T	C	1.622e^-4	0.528	INTERGENIC
3R	4822931	3R_4822931_SNP [dm3] 3R_8997209_SNP [dm6]	A	G	1.623e^-4	0.528	UPSTREAM CG11977 INTRON CG31100
3L	18794686	3L_18794686_SNP [dm3] 3L_18801586_SNP [dm6]	T	C	1.627e^-4	0.528	UPSTREAM ftz-f1 DOWNSTREAM CG14073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17272502	2R_17272502_SNP [dm3] 2R_21384997_SNP [dm6]	A	G	1.630e^-4	0.528	SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_inv mE1_TFBS_sens
X	4099232	X_4099232_SNP [dm3] X_4205199_SNP [dm6]	G	A	1.630e^-4	0.528	INTRON Fas2
3R	3553491	3R_3553491_SNP [dm3] 3R_7727769_SNP [dm6]	C	G	1.633e^-4	0.528	INTERGENIC
2R	8461118	2R_8461118_SNP [dm3] 2R_12573613_SNP [dm6]	A	G	1.639e^-4	0.529	SYNONYMOUS_CODING ClC-b	TF binding site mE1_TFBS_sens
2L	20293172	2L_20293172_SNP [dm3] 2L_20293172_SNP [dm6]	T	A	1.642e^-4	0.529	INTERGENIC
2R	12523070	2R_12523070_SNP [dm3] 2R_16635565_SNP [dm6]	G	T	1.653e^-4	0.53	INTRON Alk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7705188	3L_7705188_SNP [dm3] 3L_7712088_SNP [dm6]	C	T	1.654e^-4	0.53	INTRON CG32373 & 1 other
2R	9513213	2R_9513213_SNP [dm3] 2R_13625708_SNP [dm6]	C	T	1.659e^-4	0.53	INTRON fas
2R	14529093	2R_14529093_DEL [dm3] 2R_18641588_DEL [dm6]	AA	A	1.664e^-4	0.53	DOWNSTREAM CheA56a INTRON SP2637	TF binding site mE1_TFBS_cad
2L	18386073	2L_18386073_SNP [dm3] 2L_18386073_SNP [dm6]	T	C	1.664e^-4	0.53	INTRON Fas3
2L	7471656	2L_7471656_SNP [dm3] 2L_7471656_SNP [dm6]	T	C	1.666e^-4	0.53	SYNONYMOUS_CODING CG6055 DOWNSTREAM Ziz
3L	14284863	3L_14284863_SNP [dm3] 3L_14291763_SNP [dm6]	A	G	1.672e^-4	0.53	INTRON fz
3L	10378204	3L_10378204_SNP [dm3] 3L_10385104_SNP [dm6]	A	G	1.672e^-4	0.53	INTERGENIC
2L	11024950	2L_11024950_SNP [dm3] 2L_11024950_SNP [dm6]	C	T	1.677e^-4	0.53	INTRON Samuel
3L	10377628	3L_10377628_SNP [dm3] 3L_10384528_SNP [dm6]	G	A	1.677e^-4	0.53	INTERGENIC
2L	2436245	2L_2436245_SNP [dm3] 2L_2436245_SNP [dm6]	G	A	1.680e^-4	0.53	INTRON dpp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13860446	2R_13860446_SNP [dm3] 2R_17972941_SNP [dm6]	T	C	1.681e^-4	0.53	INTERGENIC
X	22265130	X_22265130_SNP [dm3] X_22863294_SNP [dm6]	C	A	1.682e^-4	0.53	INTRON CG42346
2R	11187538	2R_11187538_SNP [dm3] 2R_15300033_SNP [dm6]	T	A	1.684e^-4	0.53	INTRON Trpm
2L	5038208	2L_5038208_SNP [dm3] 2L_5038208_SNP [dm6]	G	A	1.689e^-4	0.531	SYNONYMOUS_CODING CG14042 UTR_5_PRIME SP555 UPSTREAM SP555 DOWNSTREAM Cg25C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	11264106	2R_11264106_SNP [dm3] 2R_15376601_SNP [dm6]	T	C	1.696e^-4	0.532	UPSTREAM CR43105 & 1 other DOWNSTREAM dup INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	9329565	3L_9329565_SNP [dm3] 3L_9336465_SNP [dm6]	G	T	1.700e^-4	0.532	INTRON PGRP-LA
2R	5701074	2R_5701074_SNP [dm3] 2R_9813569_SNP [dm6]	C	A	1.703e^-4	0.532	UPSTREAM CG1648 INTRON CG1648
3L	11848993	3L_11848993_SNP [dm3] 3L_11855893_SNP [dm6]	T	A	1.705e^-4	0.532	INTRON CG44837
2L	21290337	2L_21290337_SNP [dm3] 2L_21290337_SNP [dm6]	G	A	1.707e^-4	0.532	UPSTREAM Gr39a INTRON Mio
X	12902687	X_12902687_SNP [dm3] X_13008654_SNP [dm6]	G	A	1.709e^-4	0.532	INTRON rad
3L	12050047	3L_12050047_SNP [dm3] 3L_12056947_SNP [dm6]	G	C	1.724e^-4	0.533	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19207519	2L_19207519_SNP [dm3] 2L_19207519_SNP [dm6]	G	T	1.725e^-4	0.533	INTRON drl
3R	25562774	3R_25562774_SNP [dm3] 3R_29737052_SNP [dm6]	T	C	1.729e^-4	0.533	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	23269104	3R_23269104_SNP [dm3] 3R_27443382_SNP [dm6]	T	A	1.730e^-4	0.533	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8484913	2R_8484913_SNP [dm3] 2R_12597408_SNP [dm6]	C	A	1.730e^-4	0.533	INTRON Amph
2L	3891023	2L_3891023_SNP [dm3] 2L_3891023_SNP [dm6]	T	C	1.733e^-4	0.533	UPSTREAM capu INTRON capu
3R	22188332	3R_22188332_SNP [dm3] 3R_26362610_SNP [dm6]	C	T	1.735e^-4	0.533	DOWNSTREAM CG33970 INTERGENIC
3R	8050452	3R_8050452_SNP [dm3] 3R_12224730_SNP [dm6]	A	G	1.739e^-4	0.533	SYNONYMOUS_CODING CG17404 UPSTREAM CR43477 DOWNSTREAM CG10014 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10378368	3L_10378368_SNP [dm3] 3L_10385268_SNP [dm6]	G	A	1.740e^-4	0.533	INTERGENIC
2L	13090763	2L_13090763_SNP [dm3] 2L_13090763_SNP [dm6]	C	T	1.746e^-4	0.534	DOWNSTREAM CR44197 INTERGENIC
X	15431331	X_15431331_SNP [dm3] X_15537298_SNP [dm6]	C	T	1.759e^-4	0.537	INTRON Ac13E
2L	14905746	2L_14905746_SNP [dm3] 2L_14905746_SNP [dm6]	T	A	1.766e^-4	0.538	INTERGENIC
3R	24824591	3R_24824591_SNP [dm3] 3R_28998869_SNP [dm6]	A	G	1.766e^-4	0.538	INTRON wat
3R	26388664	3R_26388664_SNP [dm3] 3R_30562942_SNP [dm6]	C	T	1.770e^-4	0.538	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19073587	3R_19073587_SNP [dm3] 3R_23247865_SNP [dm6]	C	T	1.782e^-4	0.54	INTRON CG4467
3R	26907606	3R_26907606_SNP [dm3] 3R_31081884_SNP [dm6]	T	A	1.783e^-4	0.54	INTRON Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15458124	2L_15458124_SNP [dm3] 2L_15458124_SNP [dm6]	T	A	1.786e^-4	0.54	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	4144149	3L_4144149_MNP [dm3] 3L_4144149_MNP [dm6]	GTT	TAA	1.789e^-4	0.54	INTRON CG32260
2R	7359161	2R_7359161_SNP [dm3] 2R_11471656_SNP [dm6]	G	T	1.795e^-4	0.541	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14780710	3R_14780710_SNP [dm3] 3R_18954988_SNP [dm6]	C	T	1.805e^-4	0.543	INTRON CG42613 & 1 other
3L	944122	3L_944122_SNP [dm3] 3L_944122_SNP [dm6]	G	A	1.808e^-4	0.544	INTRON Glut1
2R	15226002	2R_15226002_SNP [dm3] 2R_19338497_SNP [dm6]	T	A	1.815e^-4	0.544	INTRON Rgk1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18541040	X_18541040_SNP [dm3] X_18647007_SNP [dm6]	G	C	1.819e^-4	0.544	INTRON Rip11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11330883	2R_11330883_SNP [dm3] 2R_15443378_SNP [dm6]	G	A	1.820e^-4	0.544	INTRON CG43729
2L	15454552	2L_15454552_SNP [dm3] 2L_15454552_SNP [dm6]	A	G	1.823e^-4	0.545	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1228611	2L_1228611_SNP [dm3] 2L_1228611_SNP [dm6]	C	T	1.836e^-4	0.547	SYNONYMOUS_CODING CG42329
2R	13920091	2R_13920091_SNP [dm3] 2R_18032586_SNP [dm6]	T	A	1.838e^-4	0.547	INTERGENIC
2L	12528887	2L_12528887_SNP [dm3] 2L_12528887_SNP [dm6]	T	C	1.840e^-4	0.547	INTRON bun	TF binding site BDTNP1_TFBS_dl
3R	26377623	3R_26377623_SNP [dm3] 3R_30551901_SNP [dm6]	G	C	1.846e^-4	0.548	INTRON tmod
3R	4519619	3R_4519619_SNP [dm3] 3R_8693897_SNP [dm6]	T	C	1.860e^-4	0.551	SYNONYMOUS_CODING hb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10704163	2L_10704163_SNP [dm3] 2L_10704163_SNP [dm6]	C	A	1.864e^-4	0.551	SYNONYMOUS_CODING CG6415 INTRON Lip2
3L	12050043	3L_12050043_SNP [dm3] 3L_12056943_SNP [dm6]	C	G	1.866e^-4	0.551	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14528183	3R_14528183_SNP [dm3] 3R_18702461_SNP [dm6]	A	G	1.867e^-4	0.551	INTERGENIC
2L	8383248	2L_8383248_SNP [dm3] 2L_8383248_SNP [dm6]	A	T	1.871e^-4	0.551	NON_SYNONYMOUS_CODING Rcd4 UPSTREAM CG13392 DOWNSTREAM l_2_k12914	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13752642	3L_13752642_SNP [dm3] 3L_13759542_SNP [dm6]	A	G	1.878e^-4	0.552	INTRON bru-3
3R	25315932	3R_25315932_SNP [dm3] 3R_29490210_SNP [dm6]	A	G	1.880e^-4	0.552	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8503747	2L_8503747_SNP [dm3] 2L_8503747_SNP [dm6]	C	A	1.889e^-4	0.553	INTRON Dh31
3L	10377546	3L_10377546_SNP [dm3] 3L_10384446_SNP [dm6]	A	C	1.890e^-4	0.553	INTERGENIC
2R	13918563	2R_13918563_SNP [dm3] 2R_18031058_SNP [dm6]	A	T	1.895e^-4	0.554	INTERGENIC
3L	10233053	3L_10233053_SNP [dm3] 3L_10239953_SNP [dm6]	C	T	1.904e^-4	0.554	UPSTREAM CR45403 INTERGENIC
2R	18261619	2R_18261619_SNP [dm3] 2R_22374114_SNP [dm6]	T	A	1.904e^-4	0.554	UPSTREAM Rtf1 INTRON CR44759	TF binding site BDTNP1_TFBS_dl
2R	13681294	2R_13681294_SNP [dm3] 2R_17793789_SNP [dm6]	T	C	1.913e^-4	0.554	UTR_5_PRIME Dhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	21383690	2L_21383690_SNP [dm3] 2L_21383690_SNP [dm6]	T	A	1.916e^-4	0.554	INTRON nrv3	transposable element FlyBase
2R	8455141	2R_8455141_DEL [dm3] 2R_12567636_DEL [dm6]	TCT	T	1.920e^-4	0.554	INTRON Cyp301a1
3L	10378453	3L_10378453_SNP [dm3] 3L_10385353_SNP [dm6]	T	A	1.921e^-4	0.554	INTERGENIC
2L	8508773	2L_8508773_SNP [dm3] 2L_8508773_SNP [dm6]	G	A	1.922e^-4	0.554	DOWNSTREAM CG13096 INTERGENIC
2L	8512163	2L_8512163_DEL [dm3] 2L_8512163_DEL [dm6]	AA	A	1.923e^-4	0.554	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21383689	2L_21383689_SNP [dm3] 2L_21383689_SNP [dm6]	C	A	1.924e^-4	0.554	INTRON nrv3	transposable element FlyBase
2L	1237430	2L_1237430_SNP [dm3] 2L_1237430_SNP [dm6]	T	G	1.930e^-4	0.555	INTERGENIC
3R	26589003	3R_26589003_SNP [dm3] 3R_30763281_SNP [dm6]	C	A	1.933e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	12168457	2R_12168457_SNP [dm3] 2R_16280952_SNP [dm6]	A	C	1.937e^-4	0.556	UTR_5_PRIME CG15705 DOWNSTREAM CG15704 & 1 other
2R	20022912	2R_20022912_SNP [dm3] 2R_24135389_SNP [dm6]	T	C	1.940e^-4	0.556	UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8 INTRON CG4065
3L	10832559	3L_10832559_SNP [dm3] 3L_10839459_SNP [dm6]	T	C	1.945e^-4	0.556	INTERGENIC
3L	13142140	3L_13142140_SNP [dm3] 3L_13149040_SNP [dm6]	T	A	1.949e^-4	0.556	INTERGENIC
3L	12050021	3L_12050021_SNP [dm3] 3L_12056921_SNP [dm6]	T	C	1.950e^-4	0.556	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11187452	2R_11187452_SNP [dm3] 2R_15299947_SNP [dm6]	T	C	1.955e^-4	0.556	INTRON Trpm
2L	14905769	2L_14905769_SNP [dm3] 2L_14905769_SNP [dm6]	G	A	1.960e^-4	0.556	INTERGENIC
X	22263482	X_22263482_SNP [dm3] X_22861646_SNP [dm6]	G	C	1.961e^-4	0.556	INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	10144138	3R_10144138_SNP [dm3] 3R_14318416_SNP [dm6]	C	T	1.962e^-4	0.556	SYNONYMOUS_CODING pr-set7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11219211	2R_11219211_SNP [dm3] 2R_15331706_SNP [dm6]	A	G	1.982e^-4	0.56	UPSTREAM CR44371 INTRON Hr51	TF binding site BDTNP1_TFBS_dl
3R	17002632	3R_17002632_SNP [dm3] 3R_21176910_SNP [dm6]	C	T	1.983e^-4	0.56	INTRON SNF4Agamma
2R	15658328	2R_15658328_SNP [dm3] 2R_19770823_SNP [dm6]	C	A	1.998e^-4	0.563	SPLICE_SITE_REGION Or56a INTRON Or56a
2R	16063430	2R_16063430_SNP [dm3] 2R_20175925_SNP [dm6]	G	T	2.003e^-4	0.563	INTERGENIC
3L	7704978	3L_7704978_DEL [dm3] 3L_7711878_DEL [dm6]	TGTGAAGGATATACACAAGC...	G	2.008e^-4	0.563	INTRON CG32373 & 1 other
2R	8566651	2R_8566651_SNP [dm3] 2R_12679146_SNP [dm6]	C	G	2.009e^-4	0.563	DOWNSTREAM CG8771 INTRON CG42708	TF binding site mE1_TFBS_Trl
3R	18328932	3R_18328932_SNP [dm3] 3R_22503210_SNP [dm6]	T	A	2.012e^-4	0.563	INTRON Octbeta1R
2R	11795618	2R_11795618_SNP [dm3] 2R_15908113_SNP [dm6]	C	G	2.013e^-4	0.563	INTRON sli
3R	25875947	3R_25875947_SNP [dm3] 3R_30050225_SNP [dm6]	G	A	2.027e^-4	0.563	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4539420	X_4539420_SNP [dm3] X_4645387_SNP [dm6]	T	A	2.027e^-4	0.563	UTR_3_PRIME HLH4C UPSTREAM CG3062	TF binding site mE1_TFBS_chinmo
2R	16063432	2R_16063432_SNP [dm3] 2R_20175927_SNP [dm6]	T	A	2.030e^-4	0.563	INTERGENIC
2R	11786854	2R_11786854_DEL [dm3] 2R_15899349_DEL [dm6]	GTCCA	G	2.033e^-4	0.563	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2039417	2L_2039417_SNP [dm3] 2L_2039417_SNP [dm6]	T	G	2.035e^-4	0.563	UPSTREAM Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_dl
2R	6857162	2R_6857162_SNP [dm3] 2R_10969657_SNP [dm6]	T	C	2.040e^-4	0.563	INTERGENIC
3R	19920244	3R_19920244_SNP [dm3] 3R_24094522_SNP [dm6]	T	C	2.042e^-4	0.563	INTRON 4EHP
2R	11795375	2R_11795375_SNP [dm3] 2R_15907870_SNP [dm6]	T	A	2.043e^-4	0.563	INTRON sli
2R	5716533	2R_5716533_SNP [dm3] 2R_9829028_SNP [dm6]	C	G	2.044e^-4	0.563	NON_SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8392141	3L_8392141_SNP [dm3] 3L_8399041_SNP [dm6]	T	A	2.044e^-4	0.563	UTR_5_PRIME CG7120
3L	13049780	3L_13049780_SNP [dm3] 3L_13056680_SNP [dm6]	C	T	2.046e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18436296	2L_18436296_SNP [dm3] 2L_18436296_SNP [dm6]	G	A	2.047e^-4	0.563	INTERGENIC
X	4833031	X_4833031_SNP [dm3] X_4938998_SNP [dm6]	T	G	2.049e^-4	0.563	UPSTREAM CG44774 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1473973	2L_1473973_SNP [dm3] 2L_1473973_SNP [dm6]	A	T	2.059e^-4	0.564	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16219117	2L_16219117_SNP [dm3] 2L_16219117_SNP [dm6]	A	G	2.063e^-4	0.564	INTERGENIC
3R	25902769	3R_25902769_SNP [dm3] 3R_30077047_SNP [dm6]	A	T	2.064e^-4	0.564	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14905688	2L_14905688_SNP [dm3] 2L_14905688_SNP [dm6]	G	C	2.075e^-4	0.565	INTERGENIC
3R	16702136	3R_16702136_SNP [dm3] 3R_20876414_SNP [dm6]	T	C	2.082e^-4	0.565	INTERGENIC
2L	18385930	2L_18385930_SNP [dm3] 2L_18385930_SNP [dm6]	G	A	2.082e^-4	0.565	INTRON Fas3
3L	14708808	3L_14708808_SNP [dm3] 3L_14715708_SNP [dm6]	T	A	2.096e^-4	0.565	INTRON ome
2L	6403215	2L_6403215_SNP [dm3] 2L_6403215_SNP [dm6]	G	A	2.097e^-4	0.565	INTRON CG42368	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14288079	3L_14288079_SNP [dm3] 3L_14294979_SNP [dm6]	T	C	2.097e^-4	0.565	INTRON fz
2R	13867810	2R_13867810_SNP [dm3] 2R_17980305_SNP [dm6]	T	C	2.098e^-4	0.565	INTRON dpr13
2R	20022989	2R_20022989_SNP [dm3] 2R_24135466_SNP [dm6]	G	T	2.104e^-4	0.565	SYNONYMOUS_CODING CG4065 DOWNSTREAM Zfrp8
3R	15461985	3R_15461985_SNP [dm3] 3R_19636263_SNP [dm6]	G	A	2.105e^-4	0.565	DOWNSTREAM CG34138 INTRON subdued
2R	16418339	2R_16418339_SNP [dm3] 2R_20530834_SNP [dm6]	C	A	2.114e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5389274	2L_5389274_SNP [dm3] 2L_5389274_SNP [dm6]	T	A	2.129e^-4	0.565	DOWNSTREAM CR44745 INTERGENIC
2L	19686695	2L_19686695_SNP [dm3] 2L_19686695_SNP [dm6]	C	T	2.131e^-4	0.565	INTRON Lar
2R	18361239	2R_18361239_SNP [dm3] 2R_22473734_SNP [dm6]	G	A	2.133e^-4	0.565	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14287946	3L_14287946_SNP [dm3] 3L_14294846_SNP [dm6]	G	A	2.135e^-4	0.565	INTRON fz
2L	11291351	2L_11291351_SNP [dm3] 2L_11291351_SNP [dm6]	G	A	2.137e^-4	0.565	UPSTREAM CR43409 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14189444	3L_14189444_SNP [dm3] 3L_14196344_SNP [dm6]	A	G	2.138e^-4	0.565	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	5701073	2R_5701073_SNP [dm3] 2R_9813568_SNP [dm6]	G	A	2.140e^-4	0.565	UPSTREAM CG1648 INTRON CG1648
3L	18021592	3L_18021592_SNP [dm3] 3L_18028492_SNP [dm6]	C	A	2.142e^-4	0.565	INTRON Eip75B
3L	822167	3L_822167_DEL [dm3] 3L_822167_DEL [dm6]	TG	T	2.144e^-4	0.565	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8429437	2R_8429437_SNP [dm3] 2R_12541932_SNP [dm6]	A	T	2.144e^-4	0.565	INTRON fra
2R	14509237	2R_14509237_SNP [dm3] 2R_18621732_SNP [dm6]	C	T	2.155e^-4	0.565	UTR_5_PRIME CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA
3L	12080574	3L_12080574_SNP [dm3] 3L_12087474_SNP [dm6]	T	G	2.156e^-4	0.565	INTERGENIC
3L	13753111	3L_13753111_SNP [dm3] 3L_13760011_SNP [dm6]	A	T	2.158e^-4	0.565	INTRON bru-3
3L	7704938	3L_7704938_SNP [dm3] 3L_7711838_SNP [dm6]	T	A	2.162e^-4	0.565	INTRON CG32373 & 1 other
2L	21333378	2L_21333378_SNP [dm3] 2L_21333378_SNP [dm6]	A	C	2.167e^-4	0.565	INTRON dimm	TF binding site mE1_TFBS_inv
2R	11679432	2R_11679432_SNP [dm3] 2R_15791927_SNP [dm6]	G	A	2.172e^-4	0.565	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	8509953	2L_8509953_SNP [dm3] 2L_8509953_SNP [dm6]	G	A	2.177e^-4	0.565	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15524603	2R_15524603_INS [dm3] 2R_19637098_INS [dm6]	A	AA	2.182e^-4	0.565	UPSTREAM mir-4983 & 1 other INTRON CG18367
2L	2196524	2L_2196524_SNP [dm3] 2L_2196524_SNP [dm6]	G	A	2.184e^-4	0.565	INTRON CG34172	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2L	5197312	2L_5197312_SNP [dm3] 2L_5197312_SNP [dm6]	C	A	2.187e^-4	0.565	INTRON Msp300	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	21368645	2L_21368645_SNP [dm3] 2L_21368645_SNP [dm6]	G	T	2.189e^-4	0.565	INTRON Gr39b
3R	26935275	3R_26935275_SNP [dm3] 3R_31109553_SNP [dm6]	T	C	2.191e^-4	0.565	UPSTREAM CG11318 INTERGENIC
X	18536977	X_18536977_SNP [dm3] X_18642944_SNP [dm6]	C	T	2.191e^-4	0.565	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8547811	3L_8547811_SNP [dm3] 3L_8554711_SNP [dm6]	C	T	2.193e^-4	0.565	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22188401	3R_22188401_SNP [dm3] 3R_26362679_SNP [dm6]	T	C	2.199e^-4	0.565	DOWNSTREAM CG33970 INTERGENIC
3R	22188405	3R_22188405_SNP [dm3] 3R_26362683_SNP [dm6]	G	C	2.199e^-4	0.565	DOWNSTREAM CG33970 INTERGENIC
2L	4575677	2L_4575677_SNP [dm3] 2L_4575677_SNP [dm6]	T	C	2.202e^-4	0.565	INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5722750	2R_5722750_SNP [dm3] 2R_9835245_SNP [dm6]	C	A	2.203e^-4	0.565	INTRON hebe	TF binding site mE1_TFBS_HSA
2L	13057901	2L_13057901_SNP [dm3] 2L_13057901_SNP [dm6]	C	A	2.207e^-4	0.565	INTRON CG9932
2L	3405769	2L_3405769_SNP [dm3] 2L_3405769_SNP [dm6]	C	A	2.210e^-4	0.565	SYNONYMOUS_CODING pgant2
3R	25562591	3R_25562591_SNP [dm3] 3R_29736869_SNP [dm6]	A	G	2.213e^-4	0.565	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	15365823	2R_15365823_INS [dm3] 2R_19478318_INS [dm6]	A	AA	2.214e^-4	0.565	INTRON par-1
2L	3072988	2L_3072988_SNP [dm3] 2L_3072988_SNP [dm6]	T	C	2.215e^-4	0.565	UPSTREAM toc INTRON toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18304684	3L_18304684_SNP [dm3] 3L_18311584_SNP [dm6]	A	T	2.216e^-4	0.565	INTERGENIC
3L	9161576	3L_9161576_DEL [dm3] 3L_9168476_DEL [dm6]	TT	T	2.219e^-4	0.565	INTRON Rdl
3L	1254044	3L_1254044_SNP [dm3] 3L_1254044_SNP [dm6]	A	G	2.221e^-4	0.565	INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
3L	13769988	3L_13769988_SNP [dm3] 3L_13776888_SNP [dm6]	G	A	2.228e^-4	0.565	INTRON bru-3
3L	5423850	3L_5423850_SNP [dm3] 3L_5430750_SNP [dm6]	G	A	2.230e^-4	0.565	INTRON CG34391
2L	21333416	2L_21333416_SNP [dm3] 2L_21333416_SNP [dm6]	C	T	2.230e^-4	0.565	INTRON dimm	TF binding site mE1_TFBS_inv
2L	3500847	2L_3500847_SNP [dm3] 2L_3500847_SNP [dm6]	C	A	2.232e^-4	0.565	DOWNSTREAM tim INTRON tim
2L	3500829	2L_3500829_SNP [dm3] 2L_3500829_SNP [dm6]	A	T	2.233e^-4	0.565	DOWNSTREAM tim INTRON tim
X	22265207	X_22265207_SNP [dm3] X_22863371_SNP [dm6]	C	A	2.234e^-4	0.565	INTRON CG42346
3L	8521742	3L_8521742_SNP [dm3] 3L_8528642_SNP [dm6]	A	G	2.235e^-4	0.565	UPSTREAM foi INTRON foi
2L	8538798	2L_8538798_SNP [dm3] 2L_8538798_SNP [dm6]	A	G	2.237e^-4	0.565	DOWNSTREAM CG17834 INTRON CG17834
3R	25562603	3R_25562603_SNP [dm3] 3R_29736881_SNP [dm6]	C	T	2.240e^-4	0.565	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25562623	3R_25562623_SNP [dm3] 3R_29736901_SNP [dm6]	C	G	2.240e^-4	0.565	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25562636	3R_25562636_SNP [dm3] 3R_29736914_SNP [dm6]	C	G	2.240e^-4	0.565	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	20840978	X_20840978_SNP [dm3] X_20969951_SNP [dm6]	A	T	2.240e^-4	0.565	INTERGENIC
2R	8264831	2R_8264831_SNP [dm3] 2R_12377326_SNP [dm6]	G	A	2.260e^-4	0.567	UTR_3_PRIME Cpr49Aa
2R	7667019	2R_7667019_SNP [dm3] 2R_11779514_SNP [dm6]	C	G	2.262e^-4	0.567	DOWNSTREAM CG42493 INTRON ths
3L	14508069	3L_14508069_SNP [dm3] 3L_14514969_SNP [dm6]	A	G	2.274e^-4	0.567	INTRON bbg
2L	10700282	2L_10700282_SNP [dm3] 2L_10700282_SNP [dm6]	T	C	2.276e^-4	0.567	INTRON Lip1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3255154	3L_3255154_INS [dm3] 3L_3255154_INS [dm6]	C	CCC	2.278e^-4	0.567	DOWNSTREAM CR43626 INTERGENIC
3R	15485053	3R_15485053_SNP [dm3] 3R_19659331_SNP [dm6]	A	G	2.280e^-4	0.567	UPSTREAM ort INTERGENIC
2L	1228539	2L_1228539_SNP [dm3] 2L_1228539_SNP [dm6]	T	C	2.285e^-4	0.567	SYNONYMOUS_CODING CG42329
2R	5716364	2R_5716364_SNP [dm3] 2R_9828859_SNP [dm6]	T	G	2.286e^-4	0.567	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26388554	3R_26388554_SNP [dm3] 3R_30562832_SNP [dm6]	A	G	2.289e^-4	0.567	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8508793	2L_8508793_SNP [dm3] 2L_8508793_SNP [dm6]	C	T	2.297e^-4	0.567	DOWNSTREAM CG13096 INTERGENIC
3R	23247390	3R_23247390_SNP [dm3] 3R_27421668_SNP [dm6]	C	T	2.298e^-4	0.567	INTRON side
X	18544155	X_18544155_SNP [dm3] X_18650122_SNP [dm6]	C	G	2.299e^-4	0.567	DOWNSTREAM CG6540 & 1 other INTRON CG6617	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2564623	2L_2564623_SNP [dm3] 2L_2564623_SNP [dm6]	T	C	2.304e^-4	0.567	NON_SYNONYMOUS_CODING Cyp309a1 DOWNSTREAM Cyp309a2
2R	5741458	2R_5741458_SNP [dm3] 2R_9853953_SNP [dm6]	G	A	2.304e^-4	0.567	INTRON CG1516
X	22265084	X_22265084_SNP [dm3] X_22863248_SNP [dm6]	T	C	2.309e^-4	0.567	INTRON CG42346
3R	26136435	3R_26136435_SNP [dm3] 3R_30310713_SNP [dm6]	G	A	2.312e^-4	0.567	INTRON hdc
3R	14082493	3R_14082493_SNP [dm3] 3R_18256771_SNP [dm6]	T	C	2.312e^-4	0.567	SYNONYMOUS_CODING Tgs1 UTR_3_PRIME moi
2R	10201221	2R_10201221_SNP [dm3] 2R_14313716_SNP [dm6]	G	A	2.312e^-4	0.567	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9465709	2L_9465709_SNP [dm3] 2L_9465709_SNP [dm6]	A	G	2.314e^-4	0.567	INTERGENIC
2L	8504057	2L_8504057_SNP [dm3] 2L_8504057_SNP [dm6]	G	A	2.314e^-4	0.567	INTRON Dh31
X	4824921	X_4824921_SNP [dm3] X_4930888_SNP [dm6]	C	G	2.317e^-4	0.567	UPSTREAM CG44774 INTRON CG44774	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13049786	3L_13049786_SNP [dm3] 3L_13056686_SNP [dm6]	A	T	2.323e^-4	0.567	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7338497	3L_7338497_DEL [dm3] 3L_7345397_DEL [dm6]	ACTTGTTATCAA...	A	2.323e^-4	0.567	UPSTREAM CG8596 DOWNSTREAM CG14834 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	10201194	2R_10201194_SNP [dm3] 2R_14313689_SNP [dm6]	A	G	2.323e^-4	0.567	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10201195	2R_10201195_SNP [dm3] 2R_14313690_SNP [dm6]	T	A	2.323e^-4	0.567	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26408246	3R_26408246_SNP [dm3] 3R_30582524_SNP [dm6]	T	C	2.331e^-4	0.568	SYNONYMOUS_CODING Rpt6R DOWNSTREAM CG9702	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8548039	2L_8548039_SNP [dm3] 2L_8548039_SNP [dm6]	A	C	2.339e^-4	0.569	INTRON Sema-1a
3L	14294812	3L_14294812_SNP [dm3] 3L_14301712_SNP [dm6]	T	A	2.352e^-4	0.572	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11683863	2L_11683863_SNP [dm3] 2L_11683863_SNP [dm6]	T	A	2.356e^-4	0.572	INTERGENIC
3L	8390951	3L_8390951_SNP [dm3] 3L_8397851_SNP [dm6]	G	A	2.362e^-4	0.573	UPSTREAM CG7120 INTRON CG7120
3L	8288340	3L_8288340_SNP [dm3] 3L_8295240_SNP [dm6]	G	A	2.368e^-4	0.573	UTR_5_PRIME CG7201
2L	8504615	2L_8504615_SNP [dm3] 2L_8504615_SNP [dm6]	C	T	2.377e^-4	0.573	INTRON Dh31
2L	9316450	2L_9316450_SNP [dm3] 2L_9316450_SNP [dm6]	A	T	2.380e^-4	0.573	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11882373	2R_11882373_SNP [dm3] 2R_15994868_SNP [dm6]	G	A	2.381e^-4	0.573	SYNONYMOUS_CODING ATPCL
3L	7097388	3L_7097388_SNP [dm3] 3L_7104288_SNP [dm6]	C	A	2.382e^-4	0.573	INTRON form3
3L	8386486	3L_8386486_SNP [dm3] 3L_8393386_SNP [dm6]	G	C	2.384e^-4	0.573	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	18020832	3L_18020832_SNP [dm3] 3L_18027732_SNP [dm6]	T	A	2.392e^-4	0.574	INTRON Eip75B
X	5757237	X_5757237_SNP [dm3] X_5863204_SNP [dm6]	C	T	2.395e^-4	0.574	INTERGENIC
3L	13034928	3L_13034928_SNP [dm3] 3L_13041828_SNP [dm6]	C	T	2.397e^-4	0.574	UTR_5_PRIME RpS4 UPSTREAM snoRNA:Psi28S-3327a DOWNSTREAM SRm160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	10378474	3L_10378474_SNP [dm3] 3L_10385374_SNP [dm6]	T	C	2.407e^-4	0.574	INTERGENIC
3L	14287937	3L_14287937_SNP [dm3] 3L_14294837_SNP [dm6]	G	C	2.411e^-4	0.574	INTRON fz
3L	11849025	3L_11849025_SNP [dm3] 3L_11855925_SNP [dm6]	A	C	2.412e^-4	0.574	INTRON CG44837
X	13473899	X_13473899_SNP [dm3] X_13579866_SNP [dm6]	C	A	2.412e^-4	0.574	INTRON Tango13
2R	11330866	2R_11330866_DEL [dm3] 2R_15443361_DEL [dm6]	ATG	A	2.413e^-4	0.574	INTRON CG43729
2L	13675981	2L_13675981_SNP [dm3] 2L_13675981_SNP [dm6]	T	C	2.423e^-4	0.574	DOWNSTREAM CG31814 INTERGENIC
3L	14290193	3L_14290193_SNP [dm3] 3L_14297093_SNP [dm6]	T	G	2.424e^-4	0.574	INTRON fz
3R	20563216	3R_20563216_SNP [dm3] 3R_24737494_SNP [dm6]	T	C	2.425e^-4	0.574	INTRON tok
2L	608982	2L_608982_SNP [dm3] 2L_608982_SNP [dm6]	T	G	2.429e^-4	0.574	EXON CR43649
3R	23276227	3R_23276227_SNP [dm3] 3R_27450505_SNP [dm6]	C	A	2.436e^-4	0.574	INTERGENIC
3L	7705137	3L_7705137_SNP [dm3] 3L_7712037_SNP [dm6]	C	T	2.437e^-4	0.574	INTRON CG32373 & 1 other
3L	3007703	3L_3007703_SNP [dm3] 3L_3007703_SNP [dm6]	T	C	2.438e^-4	0.574	INTRON FMRFaR
2R	10089703	2R_10089703_SNP [dm3] 2R_14202198_SNP [dm6]	C	A	2.438e^-4	0.574	SYNONYMOUS_CODING Sox15 UPSTREAM VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5038210	2L_5038210_SNP [dm3] 2L_5038210_SNP [dm6]	G	A	2.439e^-4	0.574	NON_SYNONYMOUS_CODING CG14042 UTR_5_PRIME SP555 UPSTREAM SP555 DOWNSTREAM Cg25C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	6077523	2R_6077523_SNP [dm3] 2R_10190018_SNP [dm6]	A	G	2.444e^-4	0.574	INTRON KCNQ
3R	20012971	3R_20012971_SNP [dm3] 3R_24187249_SNP [dm6]	C	T	2.449e^-4	0.574	SYNONYMOUS_CODING CHORD DOWNSTREAM CG5515	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	5711470	2R_5711470_SNP [dm3] 2R_9823965_SNP [dm6]	C	G	2.453e^-4	0.574	NON_SYNONYMOUS_CODING dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13752651	3L_13752651_SNP [dm3] 3L_13759551_SNP [dm6]	A	C	2.453e^-4	0.574	INTRON bru-3
2R	10201199	2R_10201199_SNP [dm3] 2R_14313694_SNP [dm6]	A	C	2.460e^-4	0.575	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11331030	2R_11331030_SNP [dm3] 2R_15443525_SNP [dm6]	G	T	2.462e^-4	0.575	INTRON CG43729
3L	3766402	3L_3766402_SNP [dm3] 3L_3766402_SNP [dm6]	T	C	2.464e^-4	0.575	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13473860	X_13473860_INS [dm3] X_13579827_INS [dm6]	T	TTAT	2.467e^-4	0.575	INTRON Tango13
3L	8307192	3L_8307192_SNP [dm3] 3L_8314092_SNP [dm6]	T	C	2.474e^-4	0.575	SYNONYMOUS_CODING CG7185	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	14458025	3R_14458025_SNP [dm3] 3R_18632303_SNP [dm6]	C	A	2.483e^-4	0.575	INTRON qin & 1 other
3L	10361750	3L_10361750_SNP [dm3] 3L_10368650_SNP [dm6]	G	C	2.484e^-4	0.575	INTERGENIC
3R	26129336	3R_26129336_INS [dm3] 3R_30303614_INS [dm6]	C	CTTATTGTGTAC...	2.488e^-4	0.575	INTRON hdc
3R	26588949	3R_26588949_SNP [dm3] 3R_30763227_SNP [dm6]	G	A	2.489e^-4	0.575	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	14780708	3R_14780708_SNP [dm3] 3R_18954986_SNP [dm6]	T	C	2.490e^-4	0.575	INTRON CG42613 & 1 other
3L	4144303	3L_4144303_SNP [dm3] 3L_4144303_SNP [dm6]	A	C	2.491e^-4	0.575	INTRON CG32260
2R	11795380	2R_11795380_SNP [dm3] 2R_15907875_SNP [dm6]	A	C	2.495e^-4	0.576	INTRON sli
2R	16949408	2R_16949408_SNP [dm3] 2R_21061903_SNP [dm6]	C	A	2.504e^-4	0.577	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54	TF binding site mE1_TFBS_HSA
X	20825266	X_20825266_SNP [dm3] X_20954239_SNP [dm6]	C	T	2.507e^-4	0.577	INTERGENIC
3R	11812360	3R_11812360_SNP [dm3] 3R_15986638_SNP [dm6]	G	A	2.513e^-4	0.578	UTR_5_PRIME srp EXON CR44133	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10546033	2L_10546033_SNP [dm3] 2L_10546033_SNP [dm6]	T	C	2.522e^-4	0.578	SYNONYMOUS_CODING Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11136069	2R_11136069_DEL [dm3] 2R_15248564_DEL [dm6]	TA	T	2.525e^-4	0.578	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	3514792	2L_3514792_SNP [dm3] 2L_3514792_SNP [dm6]	C	T	2.526e^-4	0.578	UPSTREAM CG17593 & 1 other INTERGENIC
2R	17289471	2R_17289471_SNP [dm3] 2R_21401966_SNP [dm6]	A	G	2.527e^-4	0.578	INTRON Sdc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3500826	2L_3500826_INS [dm3] 2L_3500826_INS [dm6]	C	CGTCT	2.533e^-4	0.578	DOWNSTREAM tim INTRON tim
2R	14205809	2R_14205809_SNP [dm3] 2R_18318304_SNP [dm6]	T	A	2.533e^-4	0.578	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13870327	2R_13870327_SNP [dm3] 2R_17982822_SNP [dm6]	A	G	2.540e^-4	0.579	INTRON dpr13
2R	12052607	2R_12052607_SNP [dm3] 2R_16165102_SNP [dm6]	C	T	2.549e^-4	0.58	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_HSA
3L	6280672	3L_6280672_SNP [dm3] 3L_6287572_SNP [dm6]	T	A	2.551e^-4	0.58	INTERGENIC
3R	23247392	3R_23247392_SNP [dm3] 3R_27421670_SNP [dm6]	A	G	2.570e^-4	0.582	INTRON side
3L	14146663	3L_14146663_SNP [dm3] 3L_14153563_SNP [dm6]	A	G	2.572e^-4	0.582	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	14287943	3L_14287943_SNP [dm3] 3L_14294843_SNP [dm6]	T	C	2.572e^-4	0.582	INTRON fz
3L	14508006	3L_14508006_SNP [dm3] 3L_14514906_SNP [dm6]	A	T	2.575e^-4	0.582	INTRON bbg
2R	15657367	2R_15657367_SNP [dm3] 2R_19769862_SNP [dm6]	G	T	2.575e^-4	0.582	INTRON Or56a
2L	17501727	2L_17501727_SNP [dm3] 2L_17501727_SNP [dm6]	G	A	2.579e^-4	0.582	SYNONYMOUS_CODING Dhc36C UPSTREAM CG6412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo
2L	11683864	2L_11683864_SNP [dm3] 2L_11683864_SNP [dm6]	T	A	2.590e^-4	0.583	INTERGENIC
2L	5818395	2L_5818395_SNP [dm3] 2L_5818395_SNP [dm6]	T	C	2.591e^-4	0.583	UTR_5_PRIME CG31644
3L	7981174	3L_7981174_SNP [dm3] 3L_7988074_SNP [dm6]	T	G	2.591e^-4	0.583	INTRON nmo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	9827523	2L_9827523_SNP [dm3] 2L_9827523_SNP [dm6]	C	T	2.604e^-4	0.583	INTRON nAChRalpha6
3R	22738964	3R_22738964_SNP [dm3] 3R_26913242_SNP [dm6]	G	A	2.606e^-4	0.583	UPSTREAM Ets97D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	14918059	2L_14918059_SNP [dm3] 2L_14918059_SNP [dm6]	C	T	2.611e^-4	0.583	INTRON CG42313
3L	4476486	3L_4476486_SNP [dm3] 3L_4476486_SNP [dm6]	A	T	2.613e^-4	0.583	INTERGENIC
3L	4313742	3L_4313742_SNP [dm3] 3L_4313742_SNP [dm6]	C	A	2.617e^-4	0.583	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4891371	3L_4891371_SNP [dm3] 3L_4891371_SNP [dm6]	C	T	2.620e^-4	0.583	SYNONYMOUS_CODING CG17150
3R	10404900	3R_10404900_DEL [dm3] 3R_14579178_DEL [dm6]	CC	C	2.620e^-4	0.583	INTRON stumps
2R	8461349	2R_8461349_SNP [dm3] 2R_12573844_SNP [dm6]	C	A	2.623e^-4	0.583	SYNONYMOUS_CODING ClC-b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12078105	2R_12078105_SNP [dm3] 2R_16190600_SNP [dm6]	T	C	2.627e^-4	0.583	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12195182	3L_12195182_SNP [dm3] 3L_12202082_SNP [dm6]	C	A	2.629e^-4	0.583	INTRON Adk1
2L	15458230	2L_15458230_SNP [dm3] 2L_15458230_SNP [dm6]	G	C	2.633e^-4	0.583	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11334291	2R_11334291_SNP [dm3] 2R_15446786_SNP [dm6]	A	G	2.634e^-4	0.583	INTRON CG43729
2L	677106	2L_677106_SNP [dm3] 2L_677106_SNP [dm6]	A	G	2.634e^-4	0.583	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12008608	2R_12008608_SNP [dm3] 2R_16121103_SNP [dm6]	G	A	2.636e^-4	0.583	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2L	2184893	2L_2184893_SNP [dm3] 2L_2184893_SNP [dm6]	T	C	2.642e^-4	0.583	EXON CR43751	regulatory region REDfly_CRMs
2R	13916077	2R_13916077_SNP [dm3] 2R_18028572_SNP [dm6]	G	A	2.643e^-4	0.583	INTERGENIC
3L	10378486	3L_10378486_SNP [dm3] 3L_10385386_SNP [dm6]	G	A	2.651e^-4	0.584	INTERGENIC
2L	3508820	2L_3508820_SNP [dm3] 2L_3508820_SNP [dm6]	C	G	2.657e^-4	0.585	UPSTREAM CR45300 & 1 other DOWNSTREAM CG31954 EXON CR45299
2L	16544073	2L_16544073_DEL [dm3] 2L_16544073_DEL [dm6]	ATCTGG	A	2.659e^-4	0.585	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	11801475	2R_11801475_SNP [dm3] 2R_15913970_SNP [dm6]	G	A	2.670e^-4	0.585	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	20013822	3R_20013822_SNP [dm3] 3R_24188100_SNP [dm6]	A	G	2.670e^-4	0.585	SYNONYMOUS_CODING CG5515 DOWNSTREAM CHORD & 1 other	TF binding site mE1_TFBS_sens
2L	13695954	2L_13695954_SNP [dm3] 2L_13695954_SNP [dm6]	C	T	2.671e^-4	0.585	INTRON CG31814
2L	2893646	2L_2893646_SNP [dm3] 2L_2893646_SNP [dm6]	T	A	2.673e^-4	0.585	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19207516	2L_19207516_SNP [dm3] 2L_19207516_SNP [dm6]	A	C	2.676e^-4	0.585	INTRON drl
2L	8534548	2L_8534548_SNP [dm3] 2L_8534548_SNP [dm6]	C	A	2.687e^-4	0.586	INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	8538837	2L_8538837_SNP [dm3] 2L_8538837_SNP [dm6]	C	T	2.691e^-4	0.586	DOWNSTREAM CG17834 INTRON CG17834
3R	26923465	3R_26923465_SNP [dm3] 3R_31097743_SNP [dm6]	G	C	2.692e^-4	0.586	UPSTREAM CG11317 INTERGENIC
2L	21304739	2L_21304739_SNP [dm3] 2L_21304739_SNP [dm6]	A	C	2.696e^-4	0.586	UPSTREAM Mio INTRON Mio
3L	8307540	3L_8307540_SNP [dm3] 3L_8314440_SNP [dm6]	T	G	2.698e^-4	0.586	SYNONYMOUS_CODING CG7185	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo
3L	1253848	3L_1253848_SNP [dm3] 3L_1253848_SNP [dm6]	T	A	2.705e^-4	0.586	UPSTREAM CG9133 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5884816	2R_5884816_SNP [dm3] 2R_9997311_SNP [dm6]	C	A	2.707e^-4	0.586	UTR_3_PRIME Pka-R2 INTRON Pka-R2
2L	15259478	2L_15259478_SNP [dm3] 2L_15259478_SNP [dm6]	G	C	2.708e^-4	0.586	INTRON yuri
2R	16949448	2R_16949448_SNP [dm3] 2R_21061943_SNP [dm6]	C	T	2.710e^-4	0.586	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54	TF binding site mE1_TFBS_HSA
3L	11052122	3L_11052122_SNP [dm3] 3L_11059022_SNP [dm6]	T	C	2.712e^-4	0.586	SYNONYMOUS_CODING CG7888 DOWNSTREAM CG6321	TF binding site mE1_TFBS_cad
2R	16931661	2R_16931661_SNP [dm3] 2R_21044156_SNP [dm6]	T	C	2.718e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_sens
2R	11136113	2R_11136113_SNP [dm3] 2R_15248608_SNP [dm6]	A	T	2.718e^-4	0.586	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	9686565	2R_9686565_SNP [dm3] 2R_13799060_SNP [dm6]	G	T	2.726e^-4	0.586	INTRON Cpr50Cb
2L	5516710	2L_5516710_SNP [dm3] 2L_5516710_SNP [dm6]	T	G	2.729e^-4	0.586	INTERGENIC
2L	9316299	2L_9316299_SNP [dm3] 2L_9316299_SNP [dm6]	G	A	2.732e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	18890087	2R_18890087_SNP [dm3] 2R_23002564_SNP [dm6]	C	A	2.736e^-4	0.586	INTRON twi	TF binding site mE1_TFBS_bab1
3L	7766432	3L_7766432_SNP [dm3] 3L_7773332_SNP [dm6]	T	C	2.736e^-4	0.586	INTRON Clk	regulatory region REDfly_CRMs
2L	1233443	2L_1233443_SNP [dm3] 2L_1233443_SNP [dm6]	A	G	2.740e^-4	0.587	INTERGENIC
2R	11882388	2R_11882388_SNP [dm3] 2R_15994883_SNP [dm6]	G	C	2.756e^-4	0.589	SYNONYMOUS_CODING ATPCL
2R	10201249	2R_10201249_INS [dm3] 2R_14313744_INS [dm6]	T	TT	2.761e^-4	0.59	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9236860	X_9236860_SNP [dm3] X_9342827_SNP [dm6]	A	G	2.763e^-4	0.59	INTRON CG34449
2L	10910706	2L_10910706_SNP [dm3] 2L_10910706_SNP [dm6]	C	T	2.770e^-4	0.59	UPSTREAM CG14069 INTERGENIC
3R	15785404	3R_15785404_SNP [dm3] 3R_19959682_SNP [dm6]	A	T	2.771e^-4	0.59	INTRON Hs6st
2R	13916045	2R_13916045_SNP [dm3] 2R_18028540_SNP [dm6]	A	T	2.773e^-4	0.59	INTERGENIC
2L	21368928	2L_21368928_SNP [dm3] 2L_21368928_SNP [dm6]	A	G	2.783e^-4	0.591	NON_SYNONYMOUS_CODING Gr39b
3L	12466711	3L_12466711_SNP [dm3] 3L_12473611_SNP [dm6]	C	T	2.793e^-4	0.593	SYNONYMOUS_CODING CG10616 DOWNSTREAM CG10663
3R	20014624	3R_20014624_SNP [dm3] 3R_24188902_SNP [dm6]	C	T	2.796e^-4	0.593	UPSTREAM CG5515 DOWNSTREAM jnj INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
2L	3611555	2L_3611555_DEL [dm3] 2L_3611555_DEL [dm6]	AC	T	2.804e^-4	0.593	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3611563	2L_3611563_DEL [dm3] 2L_3611563_DEL [dm6]	AGC	A	2.804e^-4	0.593	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	17879223	3L_17879223_SNP [dm3] 3L_17886123_SNP [dm6]	G	T	2.809e^-4	0.593	SYNONYMOUS_CODING CG16775 UPSTREAM CR42548	TF binding site mE1_TFBS_cad
3R	21591070	3R_21591070_SNP [dm3] 3R_25765348_SNP [dm6]	C	T	2.814e^-4	0.593	INTERGENIC	TF binding site mE1_TFBS_inv
2R	11795809	2R_11795809_SNP [dm3] 2R_15908304_SNP [dm6]	C	T	2.820e^-4	0.593	INTRON sli	TF binding site mE1_TFBS_chinmo
2R	11188701	2R_11188701_DEL [dm3] 2R_15301196_DEL [dm6]	CAGCTTT	A	2.823e^-4	0.593	INTRON Trpm
X	15430630	X_15430630_SNP [dm3] X_15536597_SNP [dm6]	A	T	2.824e^-4	0.593	INTRON Ac13E
3L	14507979	3L_14507979_SNP [dm3] 3L_14514879_SNP [dm6]	G	C	2.825e^-4	0.593	INTRON bbg
2R	6235665	2R_6235665_SNP [dm3] 2R_10348160_SNP [dm6]	T	C	2.832e^-4	0.593	INTRON CG42732
2R	17603169	2R_17603169_SNP [dm3] 2R_21715664_SNP [dm6]	C	A	2.838e^-4	0.593	INTRON HmgD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8505450	2L_8505450_SNP [dm3] 2L_8505450_SNP [dm6]	T	C	2.841e^-4	0.593	INTRON Dh31
3L	10361734	3L_10361734_SNP [dm3] 3L_10368634_SNP [dm6]	G	A	2.843e^-4	0.593	INTERGENIC
2R	15742769	2R_15742769_SNP [dm3] 2R_19855264_SNP [dm6]	C	G	2.846e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26400608	3R_26400608_SNP [dm3] 3R_30574886_SNP [dm6]	A	T	2.847e^-4	0.593	UTR_3_PRIME tmod INTRON tmod
2L	3515434	2L_3515434_SNP [dm3] 2L_3515434_SNP [dm6]	A	T	2.850e^-4	0.593	UPSTREAM CG33123 INTRON CG17593	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	8462941	2R_8462941_SNP [dm3] 2R_12575436_SNP [dm6]	T	C	2.852e^-4	0.593	UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
3R	26407274	3R_26407274_SNP [dm3] 3R_30581552_SNP [dm6]	A	C	2.853e^-4	0.593	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
2L	21370988	2L_21370988_SNP [dm3] 2L_21370988_SNP [dm6]	G	C	2.856e^-4	0.593	UPSTREAM CG8665 INTERGENIC
2R	12251422	2R_12251422_SNP [dm3] 2R_16363917_SNP [dm6]	A	T	2.858e^-4	0.593	SYNONYMOUS_CODING CG15711 DOWNSTREAM CG6262
2R	12053398	2R_12053398_SNP [dm3] 2R_16165893_SNP [dm6]	G	A	2.861e^-4	0.593	SYNONYMOUS_CODING lbk
2L	4002322	2L_4002322_SNP [dm3] 2L_4002322_SNP [dm6]	T	G	2.874e^-4	0.595	DOWNSTREAM CR45344 INTERGENIC
3R	14542000	3R_14542000_SNP [dm3] 3R_18716278_SNP [dm6]	A	T	2.880e^-4	0.596	UTR_3_PRIME VAChT INTRON Cha	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	20014426	3R_20014426_SNP [dm3] 3R_24188704_SNP [dm6]	G	A	2.885e^-4	0.596	UTR_5_PRIME CG5515 UPSTREAM CG5515 DOWNSTREAM CHORD & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	16726315	3R_16726315_SNP [dm3] 3R_20900593_SNP [dm6]	T	C	2.890e^-4	0.596	INTERGENIC
X	4824943	X_4824943_SNP [dm3] X_4930910_SNP [dm6]	C	G	2.895e^-4	0.596	UPSTREAM CG44774 INTRON CG44774	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23276246	3R_23276246_SNP [dm3] 3R_27450524_SNP [dm6]	A	C	2.899e^-4	0.596	INTERGENIC
3L	10348915	3L_10348915_SNP [dm3] 3L_10355815_SNP [dm6]	T	C	2.899e^-4	0.596	INTRON CR44327
3L	4058450	3L_4058450_SNP [dm3] 3L_4058450_SNP [dm6]	C	T	2.907e^-4	0.597	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10378455	3L_10378455_SNP [dm3] 3L_10385355_SNP [dm6]	A	T	2.908e^-4	0.597	INTERGENIC
2L	9943065	2L_9943065_SNP [dm3] 2L_9943065_SNP [dm6]	C	T	2.921e^-4	0.599	DOWNSTREAM CG4619 INTRON CG5853
3R	22742916	3R_22742916_SNP [dm3] 3R_26917194_SNP [dm6]	A	G	2.925e^-4	0.599	INTRON sda
2R	6955275	2R_6955275_SNP [dm3] 2R_11067770_SNP [dm6]	T	A	2.936e^-4	0.6	INTRON luna
2L	21305346	2L_21305346_SNP [dm3] 2L_21305346_SNP [dm6]	A	G	2.940e^-4	0.6	INTRON Mio
3R	18331441	3R_18331441_SNP [dm3] 3R_22505719_SNP [dm6]	C	T	2.940e^-4	0.6	INTRON Octbeta1R
2L	2436272	2L_2436272_SNP [dm3] 2L_2436272_SNP [dm6]	C	T	2.956e^-4	0.603	INTRON dpp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14915287	2L_14915287_SNP [dm3] 2L_14915287_SNP [dm6]	G	T	2.960e^-4	0.603	INTRON CG42313
X	19278760	X_19278760_SNP [dm3] X_19384727_SNP [dm6]	A	C	2.963e^-4	0.603	INTRON kek5
2L	8534539	2L_8534539_SNP [dm3] 2L_8534539_SNP [dm6]	G	A	2.972e^-4	0.604	INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	5631027	2L_5631027_SNP [dm3] 2L_5631027_SNP [dm6]	G	T	2.975e^-4	0.604	DOWNSTREAM CR44822 INTRON CG31646	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	8530204	2L_8530204_SNP [dm3] 2L_8530204_SNP [dm6]	A	T	2.986e^-4	0.605	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	4144060	3L_4144060_SNP [dm3] 3L_4144060_SNP [dm6]	C	G	2.990e^-4	0.606	NON_SYNONYMOUS_CODING CG32260
2L	14918236	2L_14918236_SNP [dm3] 2L_14918236_SNP [dm6]	T	A	2.998e^-4	0.606	INTRON CG42313
3R	19066093	3R_19066093_SNP [dm3] 3R_23240371_SNP [dm6]	T	G	2.999e^-4	0.606	UPSTREAM CG4467 INTRON CG4467
2R	8499771	2R_8499771_SNP [dm3] 2R_12612266_SNP [dm6]	T	C	3.011e^-4	0.607	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3R	11661913	3R_11661913_SNP [dm3] 3R_15836191_SNP [dm6]	G	A	3.014e^-4	0.607	SYNONYMOUS_CODING ND23 DOWNSTREAM mir-4911 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	13916050	2R_13916050_SNP [dm3] 2R_18028545_SNP [dm6]	T	G	3.018e^-4	0.607	INTERGENIC
2R	8459675	2R_8459675_SNP [dm3] 2R_12572170_SNP [dm6]	T	C	3.018e^-4	0.607	SYNONYMOUS_CODING ClC-b DOWNSTREAM stil	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	22790030	3R_22790030_SNP [dm3] 3R_26964308_SNP [dm6]	C	A	3.027e^-4	0.608	DOWNSTREAM Gr97a INTRON Tsp97E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4927105	2L_4927105_SNP [dm3] 2L_4927105_SNP [dm6]	C	T	3.030e^-4	0.608	INTRON hoe1
2R	8457278	2R_8457278_SNP [dm3] 2R_12569773_SNP [dm6]	T	A	3.030e^-4	0.608	UTR_5_PRIME Ak6 UPSTREAM stil DOWNSTREAM Cyp301a1	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	13753119	3L_13753119_SNP [dm3] 3L_13760019_SNP [dm6]	A	C	3.035e^-4	0.608	INTRON bru-3
2L	10709000	2L_10709000_SNP [dm3] 2L_10709000_SNP [dm6]	C	G	3.038e^-4	0.608	UTR_5_PRIME Lip2
2L	5630076	2L_5630076_SNP [dm3] 2L_5630076_SNP [dm6]	G	A	3.041e^-4	0.608	INTRON CG31646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	4490343	2R_4490343_SNP [dm3] 2R_8602838_SNP [dm6]	T	G	3.054e^-4	0.61	INTRON rgr	TF binding site mE1_TFBS_cad
2R	7616979	2R_7616979_SNP [dm3] 2R_11729474_SNP [dm6]	A	G	3.062e^-4	0.61	INTERGENIC
2L	10300891	2L_10300891_SNP [dm3] 2L_10300891_SNP [dm6]	A	G	3.064e^-4	0.61	SYNONYMOUS_CODING CG13138	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	6079366	2R_6079366_SNP [dm3] 2R_10191861_SNP [dm6]	C	G	3.067e^-4	0.61	INTRON KCNQ
3R	26588976	3R_26588976_SNP [dm3] 3R_30763254_SNP [dm6]	C	T	3.068e^-4	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	15552563	2R_15552563_SNP [dm3] 2R_19665058_SNP [dm6]	A	G	3.068e^-4	0.61	DOWNSTREAM hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
2R	5696531	2R_5696531_SNP [dm3] 2R_9809026_SNP [dm6]	A	G	3.073e^-4	0.61	INTERGENIC
2L	13362860	2L_13362860_INS [dm3] 2L_13362860_INS [dm6]	A	AA	3.078e^-4	0.61	DOWNSTREAM Nnp-1 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	14708199	2R_14708199_SNP [dm3] 2R_18820694_SNP [dm6]	C	T	3.081e^-4	0.61	SYNONYMOUS_CODING Phb2	TF binding site BDTNP1_TFBS_dl
3R	20012882	3R_20012882_SNP [dm3] 3R_24187160_SNP [dm6]	C	T	3.084e^-4	0.61	DOWNSTREAM CG5515 INTRON CHORD	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11980181	3R_11980181_INS [dm3] 3R_16154459_INS [dm6]	G	GT	3.085e^-4	0.61	UPSTREAM CG6006 INTERGENIC
3L	18438158	3L_18438158_INS [dm3] 3L_18445058_INS [dm6]	G	GCTTTTTAGG	3.105e^-4	0.613	INTERGENIC
2L	8529492	2L_8529492_SNP [dm3] 2L_8529492_SNP [dm6]	T	A	3.110e^-4	0.613	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2L	10546045	2L_10546045_SNP [dm3] 2L_10546045_SNP [dm6]	C	T	3.116e^-4	0.613	SYNONYMOUS_CODING Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24825485	3R_24825485_SNP [dm3] 3R_28999763_SNP [dm6]	C	T	3.117e^-4	0.613	INTRON wat
2L	2184874	2L_2184874_SNP [dm3] 2L_2184874_SNP [dm6]	T	A	3.141e^-4	0.617	EXON CR43751	regulatory region REDfly_CRMs
3L	2679592	3L_2679592_SNP [dm3] 3L_2679592_SNP [dm6]	A	T	3.145e^-4	0.618	INTRON Fife	TF binding site mE1_TFBS_chinmo
3L	18152708	3L_18152708_SNP [dm3] 3L_18159608_SNP [dm6]	A	G	3.156e^-4	0.618	SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16703584	3R_16703584_SNP [dm3] 3R_20877862_SNP [dm6]	C	T	3.159e^-4	0.618	SYNONYMOUS_CODING TotZ DOWNSTREAM CR44048
3L	11837162	3L_11837162_SNP [dm3] 3L_11844062_SNP [dm6]	C	T	3.162e^-4	0.618	INTERGENIC
X	18537606	X_18537606_SNP [dm3] X_18643573_SNP [dm6]	T	C	3.163e^-4	0.618	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3505553	2L_3505553_SNP [dm3] 2L_3505553_SNP [dm6]	T	C	3.168e^-4	0.618	INTRON tim	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9356198	3R_9356198_SNP [dm3] 3R_13530476_SNP [dm6]	T	G	3.173e^-4	0.618	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23718284	3R_23718284_DEL [dm3] 3R_27892562_DEL [dm6]	TGCTA	C	3.177e^-4	0.618	INTRON CG34353
2L	3502470	2L_3502470_SNP [dm3] 2L_3502470_SNP [dm6]	G	C	3.181e^-4	0.618	SYNONYMOUS_CODING tim
2R	13548742	2R_13548742_SNP [dm3] 2R_17661237_SNP [dm6]	A	G	3.183e^-4	0.618	INTRON CCHa1-R
3R	26941641	3R_26941641_SNP [dm3] 3R_31115919_SNP [dm6]	C	G	3.188e^-4	0.618	INTERGENIC
3L	820255	3L_820255_SNP [dm3] 3L_820255_SNP [dm6]	C	A	3.193e^-4	0.618	UPSTREAM CR43883 INTERGENIC
3R	25562559	3R_25562559_SNP [dm3] 3R_29736837_SNP [dm6]	T	A	3.202e^-4	0.618	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16062788	2R_16062788_SNP [dm3] 2R_20175283_SNP [dm6]	T	A	3.202e^-4	0.618	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13919968	2R_13919968_SNP [dm3] 2R_18032463_SNP [dm6]	G	A	3.204e^-4	0.618	INTERGENIC
2R	13919973	2R_13919973_SNP [dm3] 2R_18032468_SNP [dm6]	G	A	3.204e^-4	0.618	INTERGENIC
3L	16727885	3L_16727885_SNP [dm3] 3L_16734785_SNP [dm6]	G	C	3.204e^-4	0.618	INTRON CG9701
3L	11053510	3L_11053510_SNP [dm3] 3L_11060410_SNP [dm6]	T	G	3.212e^-4	0.618	DOWNSTREAM CG7888 INTRON CG6321
2L	8524608	2L_8524608_SNP [dm3] 2L_8524608_SNP [dm6]	C	T	3.214e^-4	0.618	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2L	17685118	2L_17685118_SNP [dm3] 2L_17685118_SNP [dm6]	T	A	3.215e^-4	0.618	INTRON CadN
2R	10201183	2R_10201183_SNP [dm3] 2R_14313678_SNP [dm6]	T	C	3.222e^-4	0.618	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2184871	2L_2184871_SNP [dm3] 2L_2184871_SNP [dm6]	A	T	3.225e^-4	0.618	EXON CR43751	regulatory region REDfly_CRMs
2L	3515488	2L_3515488_SNP [dm3] 2L_3515488_SNP [dm6]	G	A	3.235e^-4	0.618	UPSTREAM CG33123 INTRON CG17593	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	20549471	3L_20549471_SNP [dm3] 3L_20556371_SNP [dm6]	G	T	3.244e^-4	0.618	INTERGENIC
3R	11993037	3R_11993037_INS [dm3] 3R_16167315_INS [dm6]	A	AAACA	3.247e^-4	0.618	INTRON CG6006
X	14036282	X_14036282_SNP [dm3] X_14142249_SNP [dm6]	G	T	3.247e^-4	0.618	DOWNSTREAM CR44658 INTERGENIC
2R	16076213	2R_16076213_SNP [dm3] 2R_20188708_SNP [dm6]	A	G	3.251e^-4	0.618	INTERGENIC
3R	23278585	3R_23278585_SNP [dm3] 3R_27452863_SNP [dm6]	G	T	3.252e^-4	0.618	INTERGENIC
3R	17158006	3R_17158006_SNP [dm3] 3R_21332284_SNP [dm6]	C	T	3.265e^-4	0.618	INTRON CG16791	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2184876	2L_2184876_INS [dm3] 2L_2184876_INS [dm6]	T	TATTTTGT	3.269e^-4	0.618	EXON CR43751	regulatory region REDfly_CRMs
2L	2184882	2L_2184882_SNP [dm3] 2L_2184882_SNP [dm6]	A	T	3.269e^-4	0.618	EXON CR43751	regulatory region REDfly_CRMs
2L	2184892	2L_2184892_SNP [dm3] 2L_2184892_SNP [dm6]	T	C	3.269e^-4	0.618	EXON CR43751	regulatory region REDfly_CRMs
2L	2184898	2L_2184898_INS [dm3] 2L_2184898_INS [dm6]	A	ATAACT	3.269e^-4	0.618	EXON CR43751	regulatory region REDfly_CRMs
2L	2184900	2L_2184900_SNP [dm3] 2L_2184900_SNP [dm6]	C	T	3.269e^-4	0.618	EXON CR43751	regulatory region REDfly_CRMs
2L	4830333	2L_4830333_SNP [dm3] 2L_4830333_SNP [dm6]	G	A	3.272e^-4	0.618	SYNONYMOUS_CODING CG2976 UPSTREAM mir-4912 DOWNSTREAM Ir25a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	4830336	2L_4830336_SNP [dm3] 2L_4830336_SNP [dm6]	C	T	3.272e^-4	0.618	SYNONYMOUS_CODING CG2976 UPSTREAM mir-4912 DOWNSTREAM Ir25a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	4830345	2L_4830345_SNP [dm3] 2L_4830345_SNP [dm6]	T	C	3.272e^-4	0.618	SYNONYMOUS_CODING CG2976 UPSTREAM mir-4912 DOWNSTREAM Ir25a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	23474896	3R_23474896_SNP [dm3] 3R_27649174_SNP [dm6]	C	T	3.276e^-4	0.618	UTR_5_PRIME tau INTRON tau
2R	11188349	2R_11188349_SNP [dm3] 2R_15300844_SNP [dm6]	A	G	3.280e^-4	0.618	INTRON Trpm
3R	10744081	3R_10744081_SNP [dm3] 3R_14918359_SNP [dm6]	A	G	3.281e^-4	0.618	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_inv
3R	1554782	3R_1554782_SNP [dm3] 3R_5729060_SNP [dm6]	T	C	3.283e^-4	0.618	INTERGENIC
2L	2887981	2L_2887981_SNP [dm3] 2L_2887981_SNP [dm6]	A	G	3.286e^-4	0.618	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2L	15194055	2L_15194055_SNP [dm3] 2L_15194055_SNP [dm6]	G	C	3.287e^-4	0.618	INTRON CG4168
3R	26702238	3R_26702238_SNP [dm3] 3R_30876516_SNP [dm6]	G	A	3.294e^-4	0.618	UPSTREAM CG15546 DOWNSTREAM CG12071 INTERGENIC
3L	8040286	3L_8040286_SNP [dm3] 3L_8047186_SNP [dm6]	G	C	3.295e^-4	0.618	INTRON nmo	TF binding site mE1_TFBS_cad
3L	18026338	3L_18026338_SNP [dm3] 3L_18033238_SNP [dm6]	G	A	3.297e^-4	0.618	INTRON Eip75B

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.346e^-23)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	3.034e-08

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	24.0785	5.9078e-06

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2413 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	11016619	3L_11016619_SNP [dm3] 3L_11023519_SNP [dm6]	T	A	5.195e^-9	0.01	UPSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11017014	3L_11017014_SNP [dm3] 3L_11023914_SNP [dm6]	C	A	7.431e^-7	0.361	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14539137	2L_14539137_SNP [dm3] 2L_14539137_SNP [dm6]	T	G	7.587e^-7	0.361	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11020960	3L_11020960_SNP [dm3] 3L_11027860_SNP [dm6]	G	A	9.362e^-7	0.361	NON_SYNONYMOUS_CODING CG32081 DOWNSTREAM CG32079
2L	14539122	2L_14539122_SNP [dm3] 2L_14539122_SNP [dm6]	A	C	1.046e^-6	0.361	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14294893	3R_14294893_SNP [dm3] 3R_18469171_SNP [dm6]	T	A	1.838e^-6	0.361	INTRON fru
2R	3225573	2R_3225573_SNP [dm3] 2R_7338068_SNP [dm6]	G	A	1.901e^-6	0.361	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
2R	11579779	2R_11579779_SNP [dm3] 2R_15692274_SNP [dm6]	C	T	1.921e^-6	0.361	UPSTREAM CG30087 DOWNSTREAM CG30088 EXON CR44372
2R	20298292	2R_20298292_SNP [dm3] 2R_24410769_SNP [dm6]	C	T	2.161e^-6	0.361	UTR_5_PRIME SerT UPSTREAM SerT
2L	11931386	2L_11931386_SNP [dm3] 2L_11931386_SNP [dm6]	C	T	2.208e^-6	0.361	INTERGENIC
3R	10440234	3R_10440234_SNP [dm3] 3R_14614512_SNP [dm6]	G	A	2.297e^-6	0.361	INTRON CG14853
3L	7865807	3L_7865807_SNP [dm3] 3L_7872707_SNP [dm6]	C	G	2.601e^-6	0.361	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	1605965	2L_1605965_SNP [dm3] 2L_1605965_SNP [dm6]	A	G	3.018e^-6	0.361	INTRON CG31935 & 1 other
3R	26328830	3R_26328830_SNP [dm3] 3R_30503108_SNP [dm6]	A	G	3.020e^-6	0.361	SYNONYMOUS_CODING CG31371 DOWNSTREAM PH4alphaSG1
3R	12705147	3R_12705147_SNP [dm3] 3R_16879425_SNP [dm6]	G	A	3.169e^-6	0.361	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14291727	3R_14291727_SNP [dm3] 3R_18466005_SNP [dm6]	T	A	3.211e^-6	0.361	INTRON fru
3L	11018892	3L_11018892_SNP [dm3] 3L_11025792_SNP [dm6]	A	C	4.143e^-6	0.361	DOWNSTREAM Fad2 INTRON CG32079	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2331572	2L_2331572_SNP [dm3] 2L_2331572_SNP [dm6]	C	A	4.275e^-6	0.361	INTRON CG9967 & 1 other
3R	14343537	3R_14343537_SNP [dm3] 3R_18517815_SNP [dm6]	A	T	4.586e^-6	0.361	INTRON fru
3L	13978180	3L_13978180_SNP [dm3] 3L_13985080_SNP [dm6]	A	G	4.818e^-6	0.361	INTRON CG17364	TF binding site mE1_TFBS_cad
2L	2331592	2L_2331592_SNP [dm3] 2L_2331592_SNP [dm6]	C	T	4.820e^-6	0.361	INTRON CG9967 & 1 other
X	11439492	X_11439492_SNP [dm3] X_11545459_SNP [dm6]	C	A	4.939e^-6	0.361	INTRON Drak	TF binding site mE1_TFBS_HSA
2L	1904995	2L_1904995_SNP [dm3] 2L_1904995_SNP [dm6]	C	T	5.127e^-6	0.361	INTRON CG7337
X	5846292	X_5846292_SNP [dm3] X_5952259_SNP [dm6]	A	G	5.680e^-6	0.361	UPSTREAM CG6048 DOWNSTREAM CG32755 INTERGENIC
3R	12077867	3R_12077867_SNP [dm3] 3R_16252145_SNP [dm6]	A	T	5.771e^-6	0.361	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	15012601	2L_15012601_SNP [dm3] 2L_15012601_SNP [dm6]	C	T	5.806e^-6	0.361	DOWNSTREAM l_2_35Bd EXON CR43856	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9404949	2R_9404949_SNP [dm3] 2R_13517444_SNP [dm6]	A	G	5.824e^-6	0.361	UTR_3_PRIME Vmat & 1 other DOWNSTREAM Vmat
X	19232230	X_19232230_SNP [dm3] X_19338197_SNP [dm6]	A	G	5.958e^-6	0.361	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3R	14294894	3R_14294894_SNP [dm3] 3R_18469172_SNP [dm6]	A	C	5.959e^-6	0.361	INTRON fru
2L	12173825	2L_12173825_SNP [dm3] 2L_12173825_SNP [dm6]	G	A	6.160e^-6	0.361	UTR_3_PRIME crok DOWNSTREAM CR43356	TF binding site BDTNP1_TFBS_hb
3L	539977	3L_539977_SNP [dm3] 3L_539977_SNP [dm6]	C	G	6.255e^-6	0.361	UTR_5_PRIME klar UPSTREAM CG17180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	6185668	3R_6185668_SNP [dm3] 3R_10359946_SNP [dm6]	A	C	6.298e^-6	0.361	INTRON jumu	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	12834866	3R_12834866_SNP [dm3] 3R_17009144_SNP [dm6]	T	A	6.559e^-6	0.361	INTRON CG8907
3R	12632164	3R_12632164_SNP [dm3] 3R_16806442_SNP [dm6]	T	C	6.797e^-6	0.361	DOWNSTREAM abd-A INTERGENIC	TF binding site mE1_TFBS_cad
3L	22597306	3L_22597306_SNP [dm3] 3L_22604206_SNP [dm6]	T	C	6.932e^-6	0.361	INTRON CG14459
X	10970161	X_10970161_SNP [dm3] X_11076128_SNP [dm6]	T	A	7.099e^-6	0.361	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	10440284	3R_10440284_SNP [dm3] 3R_14614562_SNP [dm6]	G	C	7.122e^-6	0.361	INTRON CG14853
3R	14656044	3R_14656044_INS [dm3] 3R_18830322_INS [dm6]	A	AA	7.365e^-6	0.364	INTRON CG18208
3R	11753619	3R_11753619_INS [dm3] 3R_15927897_INS [dm6]	A	ATACTCATTTAGTTT...	8.002e^-6	0.385	DOWNSTREAM CG34276 INTRON CG4221
X	19232233	X_19232233_SNP [dm3] X_19338200_SNP [dm6]	T	A	1.010e^-5	0.453	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
2L	1605755	2L_1605755_SNP [dm3] 2L_1605755_SNP [dm6]	C	T	1.010e^-5	0.453	INTRON CG31935 & 1 other
3R	21262126	3R_21262126_SNP [dm3] 3R_25436404_SNP [dm6]	C	A	1.014e^-5	0.453	INTRON Fur1
3R	1970751	3R_1970751_SNP [dm3] 3R_6145029_SNP [dm6]	A	C	1.080e^-5	0.471	INTERGENIC
3R	14621308	3R_14621308_SNP [dm3] 3R_18795586_SNP [dm6]	T	G	1.112e^-5	0.474	UPSTREAM CG7720 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	5694299	3R_5694299_SNP [dm3] 3R_9868577_SNP [dm6]	A	G	1.155e^-5	0.482	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
X	9741050	X_9741050_SNP [dm3] X_9847017_SNP [dm6]	C	T	1.209e^-5	0.493	INTRON CG32698
2L	11931387	2L_11931387_SNP [dm3] 2L_11931387_SNP [dm6]	T	C	1.243e^-5	0.496	INTERGENIC
3R	18246625	3R_18246625_SNP [dm3] 3R_22420903_SNP [dm6]	G	T	1.287e^-5	0.498	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12214457	2R_12214457_SNP [dm3] 2R_16326952_SNP [dm6]	A	G	1.320e^-5	0.498	INTRON Vha44
3L	17163220	3L_17163220_SNP [dm3] 3L_17170120_SNP [dm6]	G	A	1.329e^-5	0.498	INTRON Rbp6
3L	15990506	3L_15990506_SNP [dm3] 3L_15997406_SNP [dm6]	A	G	1.364e^-5	0.502	INTRON CG5830
3R	18246384	3R_18246384_SNP [dm3] 3R_22420662_SNP [dm6]	T	C	1.415e^-5	0.506	SYNONYMOUS_CODING Nop56 UPSTREAM mats	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12738378	3R_12738378_SNP [dm3] 3R_16912656_SNP [dm6]	A	G	1.429e^-5	0.506	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
3R	10440178	3R_10440178_SNP [dm3] 3R_14614456_SNP [dm6]	C	A	1.466e^-5	0.509	INTRON CG14853
2R	12214958	2R_12214958_SNP [dm3] 2R_16327453_SNP [dm6]	G	T	1.581e^-5	0.521	INTRON Vha44
3L	15990482	3L_15990482_SNP [dm3] 3L_15997382_SNP [dm6]	G	A	1.599e^-5	0.521	INTRON CG5830
3R	26330235	3R_26330235_SNP [dm3] 3R_30504513_SNP [dm6]	C	T	1.609e^-5	0.521	NON_SYNONYMOUS_CODING PH4alphaSG1
3R	18246517	3R_18246517_DEL [dm3] 3R_22420795_DEL [dm6]	AG	T	1.611e^-5	0.521	SPLICE_SITE_REGION Nop56 UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10970183	X_10970183_SNP [dm3] X_11076150_SNP [dm6]	A	T	1.714e^-5	0.545	NON_SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
2R	9451425	2R_9451425_SNP [dm3] 2R_13563920_SNP [dm6]	A	C	1.746e^-5	0.546	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3R	14497884	3R_14497884_SNP [dm3] 3R_18672162_SNP [dm6]	A	T	1.839e^-5	0.557	DOWNSTREAM CG31230 INTRON CG7702
4	417718	4_417718_DEL [dm3] 4_397092_DEL [dm6]	AA	A	1.850e^-5	0.557	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14299230	2R_14299230_SNP [dm3] 2R_18411725_SNP [dm6]	A	G	1.945e^-5	0.557	UPSTREAM Dp1 & 1 other INTRON imd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	23819274	3R_23819274_SNP [dm3] 3R_27993552_SNP [dm6]	C	T	1.971e^-5	0.557	INTERGENIC
X	16132371	X_16132371_SNP [dm3] X_16238338_SNP [dm6]	G	A	1.976e^-5	0.557	INTERGENIC
2R	6153423	2R_6153423_SNP [dm3] 2R_10265918_SNP [dm6]	A	C	1.978e^-5	0.557	UPSTREAM CG12910 INTRON CG12910	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	14497882	3R_14497882_SNP [dm3] 3R_18672160_SNP [dm6]	T	G	2.206e^-5	0.557	DOWNSTREAM CG31230 INTRON CG7702
2L	14539091	2L_14539091_SNP [dm3] 2L_14539091_SNP [dm6]	G	A	2.214e^-5	0.557	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11575268	3L_11575268_SNP [dm3] 3L_11582168_SNP [dm6]	A	C	2.224e^-5	0.557	UTR_5_PRIME CG33269 DOWNSTREAM CG32086
2R	12455740	2R_12455740_SNP [dm3] 2R_16568235_SNP [dm6]	C	G	2.231e^-5	0.557	INTRON CG4945	TF binding site mE1_TFBS_cad
3R	11753616	3R_11753616_SNP [dm3] 3R_15927894_SNP [dm6]	C	A	2.245e^-5	0.557	DOWNSTREAM CG34276 INTRON CG4221
2L	4654535	2L_4654535_SNP [dm3] 2L_4654535_SNP [dm6]	G	A	2.276e^-5	0.557	INTERGENIC
2L	11398652	2L_11398652_SNP [dm3] 2L_11398652_SNP [dm6]	A	G	2.282e^-5	0.557	INTERGENIC	regulatory region REDfly_CRMs
3R	11753617	3R_11753617_SNP [dm3] 3R_15927895_SNP [dm6]	C	T	2.303e^-5	0.557	DOWNSTREAM CG34276 INTRON CG4221
3L	11021050	3L_11021050_SNP [dm3] 3L_11027950_SNP [dm6]	C	G	2.343e^-5	0.557	DOWNSTREAM CG32079 INTRON CG32081
3R	11860790	3R_11860790_SNP [dm3] 3R_16035068_SNP [dm6]	T	C	2.348e^-5	0.557	UTR_5_PRIME pnr INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_HSA
3R	21262162	3R_21262162_SNP [dm3] 3R_25436440_SNP [dm6]	T	G	2.352e^-5	0.557	INTRON Fur1
3L	10814823	3L_10814823_SNP [dm3] 3L_10821723_SNP [dm6]	A	G	2.364e^-5	0.557	INTERGENIC
2L	14478337	2L_14478337_SNP [dm3] 2L_14478337_SNP [dm6]	C	T	2.370e^-5	0.557	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	14901944	3R_14901944_SNP [dm3] 3R_19076222_SNP [dm6]	G	A	2.402e^-5	0.557	INTRON cdi
X	2373140	X_2373140_SNP [dm3] X_2479107_SNP [dm6]	G	A	2.437e^-5	0.557	UTR_3_PRIME trol DOWNSTREAM trol INTRON trol
X	17540675	X_17540675_SNP [dm3] X_17646642_SNP [dm6]	A	C	2.461e^-5	0.557	INTRON RhoGAPp190
3R	10605598	3R_10605598_SNP [dm3] 3R_14779876_SNP [dm6]	T	C	2.473e^-5	0.557	INTRON jvl
3L	22597845	3L_22597845_SNP [dm3] 3L_22604745_SNP [dm6]	T	G	2.514e^-5	0.557	INTRON CG14459
2L	12913822	2L_12913822_SNP [dm3] 2L_12913822_SNP [dm6]	A	G	2.596e^-5	0.557	SYNONYMOUS_CODING ACXC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9071259	2R_9071259_SNP [dm3] 2R_13183754_SNP [dm6]	C	G	2.622e^-5	0.557	INTRON CG17724 & 2 others	TF binding site mE1_TFBS_run
3R	10440285	3R_10440285_SNP [dm3] 3R_14614563_SNP [dm6]	A	C	2.693e^-5	0.557	INTRON CG14853
3L	6390427	3L_6390427_SNP [dm3] 3L_6397327_SNP [dm6]	C	G	2.704e^-5	0.557	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	20814045	2L_20814045_INS [dm3] 2L_20814045_INS [dm6]	A	AA	2.748e^-5	0.557	UTR_3_PRIME CG9328 DOWNSTREAM CG33322 & 1 other
3L	14121115	3L_14121115_SNP [dm3] 3L_14128015_SNP [dm6]	C	T	2.788e^-5	0.557	INTRON Sox21b
2R	9466909	2R_9466909_SNP [dm3] 2R_13579404_SNP [dm6]	T	C	2.806e^-5	0.557	DOWNSTREAM CG6191 EXON CR44366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	11416836	3R_11416836_SNP [dm3] 3R_15591114_SNP [dm6]	G	A	2.822e^-5	0.557	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18256181	2L_18256181_SNP [dm3] 2L_18256181_SNP [dm6]	G	T	2.826e^-5	0.557	UPSTREAM CR43408 INTRON CG42750	TF binding site mE1_TFBS_HSA
3L	7120192	3L_7120192_SNP [dm3] 3L_7127092_SNP [dm6]	G	A	2.945e^-5	0.557	SYNONYMOUS_CODING BBS1 DOWNSTREAM CG8629	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11314940	3L_11314940_SNP [dm3] 3L_11321840_SNP [dm6]	G	T	2.950e^-5	0.557	UPSTREAM CG6168 INTERGENIC
2R	13826757	2R_13826757_SNP [dm3] 2R_17939252_SNP [dm6]	G	T	2.957e^-5	0.557	INTERGENIC
3R	25014183	3R_25014183_SNP [dm3] 3R_29188461_SNP [dm6]	T	G	2.989e^-5	0.557	INTRON CG14509
2R	5714590	2R_5714590_SNP [dm3] 2R_9827085_SNP [dm6]	C	G	2.993e^-5	0.557	NON_SYNONYMOUS_CODING dila INTRON dila	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1605945	2L_1605945_SNP [dm3] 2L_1605945_SNP [dm6]	G	C	3.009e^-5	0.557	INTRON CG31935 & 1 other
3R	11944936	3R_11944936_SNP [dm3] 3R_16119214_SNP [dm6]	C	G	3.030e^-5	0.557	INTRON Sb
X	20205805	X_20205805_SNP [dm3] X_20334778_SNP [dm6]	C	A	3.057e^-5	0.557	INTERGENIC
2R	9203579	2R_9203579_SNP [dm3] 2R_13316074_SNP [dm6]	T	C	3.067e^-5	0.557	INTERGENIC
3R	11763917	3R_11763917_SNP [dm3] 3R_15938195_SNP [dm6]	A	T	3.069e^-5	0.557	INTRON Sap47
X	20205784	X_20205784_INS [dm3] X_20334757_INS [dm6]	T	CAAATGTCACC...	3.087e^-5	0.557	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14295058	3R_14295058_SNP [dm3] 3R_18469336_SNP [dm6]	G	A	3.259e^-5	0.569	INTRON fru
3R	20547267	3R_20547267_SNP [dm3] 3R_24721545_SNP [dm6]	G	C	3.264e^-5	0.569	INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20547182	3R_20547182_SNP [dm3] 3R_24721460_SNP [dm6]	T	A	3.313e^-5	0.569	INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16166182	2L_16166182_SNP [dm3] 2L_16166182_SNP [dm6]	G	A	3.380e^-5	0.569	INTRON Ca-alpha1D
X	20205801	X_20205801_SNP [dm3] X_20334774_SNP [dm6]	G	A	3.400e^-5	0.569	INTERGENIC
3L	11314957	3L_11314957_SNP [dm3] 3L_11321857_SNP [dm6]	T	G	3.426e^-5	0.569	UPSTREAM CG6168 INTERGENIC
3R	24812497	3R_24812497_SNP [dm3] 3R_28986775_SNP [dm6]	T	C	3.461e^-5	0.569	INTERGENIC
3L	4028584	3L_4028584_SNP [dm3] 3L_4028584_SNP [dm6]	T	C	3.465e^-5	0.569	UTR_3_PRIME Gr64a UPSTREAM Gr64b & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5846284	X_5846284_INS [dm3] X_5952251_INS [dm6]	AT	CCCA	3.480e^-5	0.569	UPSTREAM CG6048 DOWNSTREAM CG32755 INTERGENIC
3R	14824358	3R_14824358_SNP [dm3] 3R_18998636_SNP [dm6]	G	A	3.512e^-5	0.569	INTRON gukh	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	15015050	2L_15015050_INS [dm3] 2L_15015050_INS [dm6]	T	TCAAT	3.553e^-5	0.569	INTERGENIC
2R	11006268	2R_11006268_SNP [dm3] 2R_15118763_SNP [dm6]	T	C	3.554e^-5	0.569	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4833412	3R_4833412_SNP [dm3] 3R_9007690_SNP [dm6]	A	C	3.627e^-5	0.569	NON_SYNONYMOUS_CODING CG11982 UPSTREAM CG11983	TF binding site mE1_TFBS_chinmo
3R	6185601	3R_6185601_SNP [dm3] 3R_10359879_SNP [dm6]	G	A	3.631e^-5	0.569	NON_SYNONYMOUS_CODING jumu	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11015542	3L_11015542_SNP [dm3] 3L_11022442_SNP [dm6]	A	C	3.679e^-5	0.569	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5714598	2R_5714598_SNP [dm3] 2R_9827093_SNP [dm6]	G	A	3.738e^-5	0.569	SYNONYMOUS_CODING dila INTRON dila	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12866898	2L_12866898_SNP [dm3] 2L_12866898_SNP [dm6]	T	C	3.743e^-5	0.569	INTERGENIC
2L	6932879	2L_6932879_SNP [dm3] 2L_6932879_SNP [dm6]	A	G	3.793e^-5	0.569	SYNONYMOUS_CODING CG18304 DOWNSTREAM Hrb27C & 1 other	TF binding site mE1_TFBS_cad
2R	12455775	2R_12455775_SNP [dm3] 2R_16568270_SNP [dm6]	G	T	3.794e^-5	0.569	INTRON CG4945	TF binding site mE1_TFBS_cad
2L	1475070	2L_1475070_SNP [dm3] 2L_1475070_SNP [dm6]	C	T	3.802e^-5	0.569	INTERGENIC
3R	9632935	3R_9632935_SNP [dm3] 3R_13807213_SNP [dm6]	C	T	3.820e^-5	0.569	INTERGENIC
X	16584208	X_16584208_DEL [dm3] X_16690175_DEL [dm6]	AAACATTTATATATGTATAT...	A	3.824e^-5	0.569	INTRON Sep4
X	19483227	X_19483227_SNP [dm3] X_19589194_SNP [dm6]	A	T	3.862e^-5	0.569	NON_SYNONYMOUS_CODING CG14219	TF binding site mE1_TFBS_sens
2R	9203875	2R_9203875_SNP [dm3] 2R_13316370_SNP [dm6]	C	T	3.942e^-5	0.569	INTERGENIC
3R	12738348	3R_12738348_SNP [dm3] 3R_16912626_SNP [dm6]	C	T	3.962e^-5	0.569	INTRON iab-8
3L	18112916	3L_18112916_SNP [dm3] 3L_18119816_SNP [dm6]	A	C	3.966e^-5	0.569	UTR_5_PRIME CG7341 DOWNSTREAM CG32195	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7120204	3L_7120204_SNP [dm3] 3L_7127104_SNP [dm6]	G	T	3.972e^-5	0.569	SYNONYMOUS_CODING BBS1 DOWNSTREAM CG8629	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1605871	2L_1605871_SNP [dm3] 2L_1605871_SNP [dm6]	G	C	4.016e^-5	0.569	INTRON CG31935 & 1 other
X	11439605	X_11439605_SNP [dm3] X_11545572_SNP [dm6]	T	C	4.035e^-5	0.569	INTRON Drak	TF binding site mE1_TFBS_HSA
X	20205799	X_20205799_SNP [dm3] X_20334772_SNP [dm6]	T	A	4.128e^-5	0.578	INTERGENIC
2R	15149600	2R_15149600_SNP [dm3] 2R_19262095_SNP [dm6]	T	C	4.301e^-5	0.583	SYNONYMOUS_CODING CG7229	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3184743	2L_3184743_SNP [dm3] 2L_3184743_SNP [dm6]	G	A	4.307e^-5	0.583	INTRON CG34393
3R	11700313	3R_11700313_SNP [dm3] 3R_15874591_SNP [dm6]	T	C	4.309e^-5	0.583	INTRON CG31183
3R	7946925	3R_7946925_SNP [dm3] 3R_12121203_SNP [dm6]	A	G	4.312e^-5	0.583	DOWNSTREAM CG4702 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	10440280	3R_10440280_SNP [dm3] 3R_14614558_SNP [dm6]	T	A	4.327e^-5	0.583	INTRON CG14853
2L	3850886	2L_3850886_SNP [dm3] 2L_3850886_SNP [dm6]	A	G	4.350e^-5	0.583	INTERGENIC
2L	15169728	2L_15169728_INS [dm3] 2L_15169728_INS [dm6]	A	AA	4.407e^-5	0.586	INTRON CG4168
2L	20533911	2L_20533911_SNP [dm3] 2L_20533911_SNP [dm6]	A	T	4.471e^-5	0.591	INTERGENIC
3R	14604330	3R_14604330_SNP [dm3] 3R_18778608_SNP [dm6]	A	G	4.564e^-5	0.595	INTRON CG7720
3R	24799489	3R_24799489_SNP [dm3] 3R_28973767_SNP [dm6]	G	A	4.572e^-5	0.595	INTERGENIC
3R	16983068	3R_16983068_SNP [dm3] 3R_21157346_SNP [dm6]	G	A	4.716e^-5	0.605	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	16576220	3R_16576220_SNP [dm3] 3R_20750498_SNP [dm6]	T	A	4.770e^-5	0.605	INTRON CG42322
3R	15630508	3R_15630508_SNP [dm3] 3R_19804786_SNP [dm6]	G	A	4.953e^-5	0.605	INTRON bnl	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7865769	3L_7865769_SNP [dm3] 3L_7872669_SNP [dm6]	A	C	4.995e^-5	0.605	INTRON CG32365	TF binding site mE1_TFBS_kn
2L	2331564	2L_2331564_SNP [dm3] 2L_2331564_SNP [dm6]	G	A	5.014e^-5	0.605	INTRON CG9967 & 1 other
2L	15205758	2L_15205758_SNP [dm3] 2L_15205758_SNP [dm6]	G	T	5.060e^-5	0.605	INTERGENIC
2L	6738026	2L_6738026_SNP [dm3] 2L_6738026_SNP [dm6]	A	G	5.067e^-5	0.605	SYNONYMOUS_CODING TTLL3A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9172460	2R_9172460_SNP [dm3] 2R_13284955_SNP [dm6]	C	T	5.101e^-5	0.605	INTRON Dh31-R
3R	12738382	3R_12738382_SNP [dm3] 3R_16912660_SNP [dm6]	T	A	5.107e^-5	0.605	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
3R	6973440	3R_6973440_SNP [dm3] 3R_11147718_SNP [dm6]	T	C	5.139e^-5	0.605	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14133972	3R_14133972_SNP [dm3] 3R_18308250_SNP [dm6]	C	T	5.165e^-5	0.605	INTRON PKD
2R	16870418	2R_16870418_SNP [dm3] 2R_20982913_SNP [dm6]	T	C	5.172e^-5	0.605	SYNONYMOUS_CODING CG9313 DOWNSTREAM CG15651	TF binding site mE1_TFBS_cad
3R	6973468	3R_6973468_SNP [dm3] 3R_11147746_SNP [dm6]	G	A	5.240e^-5	0.605	INTERGENIC	TF binding site mE1_TFBS_HSA
X	20590188	X_20590188_INS [dm3] X_20719161_INS [dm6]	G	GG	5.285e^-5	0.605	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	11596613	3L_11596613_SNP [dm3] 3L_11603513_SNP [dm6]	A	G	5.314e^-5	0.605	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17878964	3L_17878964_INS [dm3] 3L_17885864_INS [dm6]	C	CA	5.355e^-5	0.605	UPSTREAM CR42548 DOWNSTREAM CG16775 INTERGENIC
3R	24812507	3R_24812507_SNP [dm3] 3R_28986785_SNP [dm6]	G	A	5.414e^-5	0.605	INTERGENIC
3L	11018664	3L_11018664_SNP [dm3] 3L_11025564_SNP [dm6]	C	G	5.427e^-5	0.605	NON_SYNONYMOUS_CODING CG32079 DOWNSTREAM Fad2
3R	12831962	3R_12831962_SNP [dm3] 3R_17006240_SNP [dm6]	G	A	5.497e^-5	0.605	SYNONYMOUS_CODING Irc
3L	1487948	3L_1487948_SNP [dm3] 3L_1487948_SNP [dm6]	A	G	5.507e^-5	0.605	UPSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad
3L	12489801	3L_12489801_SNP [dm3] 3L_12496701_SNP [dm6]	A	C	5.519e^-5	0.605	INTRON CG10657
3R	12139842	3R_12139842_SNP [dm3] 3R_16314120_SNP [dm6]	C	T	5.559e^-5	0.605	SYNONYMOUS_CODING Sulf1
3R	4017676	3R_4017676_SNP [dm3] 3R_8191954_SNP [dm6]	A	T	5.588e^-5	0.605	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Kr
3L	10813815	3L_10813815_SNP [dm3] 3L_10820715_SNP [dm6]	T	A	5.634e^-5	0.605	INTERGENIC
3R	18246792	3R_18246792_SNP [dm3] 3R_22421070_SNP [dm6]	A	G	5.638e^-5	0.605	UPSTREAM mats & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6307528	X_6307528_INS [dm3] X_6413495_INS [dm6]	T	TT	5.657e^-5	0.605	INTERGENIC
2L	14478684	2L_14478684_SNP [dm3] 2L_14478684_SNP [dm6]	C	T	5.672e^-5	0.605	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12489802	3L_12489802_SNP [dm3] 3L_12496702_SNP [dm6]	G	A	5.700e^-5	0.605	INTRON CG10657
2R	9203401	2R_9203401_SNP [dm3] 2R_13315896_SNP [dm6]	C	T	5.724e^-5	0.605	INTERGENIC
2L	2338272	2L_2338272_SNP [dm3] 2L_2338272_SNP [dm6]	C	T	5.846e^-5	0.605	INTRON CG9967 & 1 other
3R	19609269	3R_19609269_SNP [dm3] 3R_23783547_SNP [dm6]	G	A	5.867e^-5	0.605	INTRON mbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11039152	3L_11039152_SNP [dm3] 3L_11046052_SNP [dm6]	G	A	5.868e^-5	0.605	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	4764413	2R_4764413_SNP [dm3] 2R_8876908_SNP [dm6]	T	A	5.900e^-5	0.605	NON_SYNONYMOUS_CODING RyR	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9253849	3L_9253849_SNP [dm3] 3L_9260749_SNP [dm6]	T	C	5.930e^-5	0.605	INTRON GluRIB
2L	13413897	2L_13413897_SNP [dm3] 2L_13413897_SNP [dm6]	T	C	5.956e^-5	0.605	SYNONYMOUS_CODING CG16956 DOWNSTREAM CG16848
2L	16601712	2L_16601712_SNP [dm3] 2L_16601712_SNP [dm6]	G	C	5.965e^-5	0.605	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15073405	3R_15073405_SNP [dm3] 3R_19247683_SNP [dm6]	C	G	5.971e^-5	0.605	INTRON CG5217
3L	11038738	3L_11038738_SNP [dm3] 3L_11045638_SNP [dm6]	A	G	6.028e^-5	0.605	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	6973628	3R_6973628_SNP [dm3] 3R_11147906_SNP [dm6]	A	G	6.067e^-5	0.605	INTERGENIC
3R	13815721	3R_13815721_SNP [dm3] 3R_17989999_SNP [dm6]	G	A	6.097e^-5	0.605	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15582657	X_15582657_SNP [dm3] X_15688624_SNP [dm6]	C	T	6.231e^-5	0.605	NON_SYNONYMOUS_CODING CG15599 UPSTREAM CG43132	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10935864	3L_10935864_SNP [dm3] 3L_10942764_SNP [dm6]	G	A	6.232e^-5	0.605	INTERGENIC
3L	7633093	3L_7633093_SNP [dm3] 3L_7639993_SNP [dm6]	C	T	6.297e^-5	0.605	DOWNSTREAM CG33275 & 2 others INTRON CG33276	TF binding site mE1_TFBS_Ubx
3R	11913414	3R_11913414_SNP [dm3] 3R_16087692_SNP [dm6]	A	G	6.367e^-5	0.605	DOWNSTREAM sxe2 INTRON Mhcl
3R	11913419	3R_11913419_SNP [dm3] 3R_16087697_SNP [dm6]	T	A	6.367e^-5	0.605	DOWNSTREAM sxe2 INTRON Mhcl
2R	4481239	2R_4481239_SNP [dm3] 2R_8593734_SNP [dm6]	A	G	6.373e^-5	0.605	DOWNSTREAM CG43183 & 1 other INTERGENIC
3R	26907919	3R_26907919_SNP [dm3] 3R_31082197_SNP [dm6]	A	G	6.407e^-5	0.605	NON_SYNONYMOUS_CODING Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18281791	3L_18281791_SNP [dm3] 3L_18288691_SNP [dm6]	G	A	6.438e^-5	0.605	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	4054931	3L_4054931_SNP [dm3] 3L_4054931_SNP [dm6]	C	G	6.467e^-5	0.605	INTRON CG1136
3R	5716548	3R_5716548_SNP [dm3] 3R_9890826_SNP [dm6]	G	T	6.516e^-5	0.605	INTRON Glut4EF	TF binding site mE1_TFBS_zfh1
3R	11952956	3R_11952956_SNP [dm3] 3R_16127234_SNP [dm6]	A	G	6.544e^-5	0.605	INTRON Sb
3R	12036564	3R_12036564_SNP [dm3] 3R_16210842_SNP [dm6]	T	C	6.612e^-5	0.605	INTERGENIC
2R	11006279	2R_11006279_SNP [dm3] 2R_15118774_SNP [dm6]	T	C	6.637e^-5	0.605	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14478360	2L_14478360_SNP [dm3] 2L_14478360_SNP [dm6]	A	C	6.639e^-5	0.605	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	24659959	3R_24659959_SNP [dm3] 3R_28834237_SNP [dm6]	G	A	6.660e^-5	0.605	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	9758699	3R_9758699_SNP [dm3] 3R_13932977_SNP [dm6]	C	A	6.665e^-5	0.605	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	22648092	3L_22648092_SNP [dm3] 3L_22654992_SNP [dm6]	C	G	6.678e^-5	0.605	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9733476	2R_9733476_SNP [dm3] 2R_13845971_SNP [dm6]	C	A	6.710e^-5	0.605	UTR_5_PRIME Syngr UPSTREAM CG30484	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18564286	3L_18564286_SNP [dm3] 3L_18571186_SNP [dm6]	A	T	6.722e^-5	0.605	INTRON AstC-R1
3L	15961265	3L_15961265_SNP [dm3] 3L_15968165_SNP [dm6]	C	T	6.741e^-5	0.605	UPSTREAM CG10516 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12105168	2R_12105168_DEL [dm3] 2R_16217663_DEL [dm6]	AA	A	6.757e^-5	0.605	INTRON mrj	TF binding site BDTNP1_TFBS_da
3R	14388986	3R_14388986_SNP [dm3] 3R_18563264_SNP [dm6]	G	T	6.771e^-5	0.605	DOWNSTREAM CG43210 & 1 other INTERGENIC
3R	14388983	3R_14388983_SNP [dm3] 3R_18563261_SNP [dm6]	T	A	6.828e^-5	0.605	INTERGENIC
3R	9535779	3R_9535779_INS [dm3] 3R_13710057_INS [dm6]	T	TT	6.839e^-5	0.605	UTR_3_PRIME primo-1 & 1 other UPSTREAM CG31469 DOWNSTREAM Adgf-C	TF binding site mE1_TFBS_cad
2L	20530286	2L_20530286_SNP [dm3] 2L_20530286_SNP [dm6]	A	G	6.860e^-5	0.605	UPSTREAM CG44270 INTERGENIC
3R	21517439	3R_21517439_SNP [dm3] 3R_25691717_SNP [dm6]	G	C	6.899e^-5	0.605	INTERGENIC
2R	15086187	2R_15086187_SNP [dm3] 2R_19198682_SNP [dm6]	T	A	6.936e^-5	0.605	INTRON hppy
3R	14388987	3R_14388987_SNP [dm3] 3R_18563265_SNP [dm6]	C	T	6.940e^-5	0.605	DOWNSTREAM CG43210 & 1 other INTERGENIC
2R	4481242	2R_4481242_DEL [dm3] 2R_8593737_DEL [dm6]	TA	T	6.943e^-5	0.605	DOWNSTREAM CG43183 & 1 other INTERGENIC
2R	4481273	2R_4481273_DEL [dm3] 2R_8593768_DEL [dm6]	TTCATGGAGCAGGATCTT...	T	6.943e^-5	0.605	DOWNSTREAM CG43183 & 1 other INTERGENIC
2R	4481241	2R_4481241_SNP [dm3] 2R_8593736_SNP [dm6]	G	A	6.955e^-5	0.605	DOWNSTREAM CG43183 & 1 other INTERGENIC
3R	14295019	3R_14295019_SNP [dm3] 3R_18469297_SNP [dm6]	C	G	6.965e^-5	0.605	INTRON fru
2R	12214308	2R_12214308_SNP [dm3] 2R_16326803_SNP [dm6]	T	A	7.004e^-5	0.605	SPLICE_SITE_REGION Vha44 INTRON Vha44
3L	11576046	3L_11576046_SNP [dm3] 3L_11582946_SNP [dm6]	G	A	7.039e^-5	0.606	SYNONYMOUS_CODING CG32086 UPSTREAM CG33269
2L	13943797	2L_13943797_SNP [dm3] 2L_13943797_SNP [dm6]	A	T	7.093e^-5	0.606	DOWNSTREAM CG16884 INTRON Ance-3
3R	1970736	3R_1970736_SNP [dm3] 3R_6145014_SNP [dm6]	A	G	7.110e^-5	0.606	INTERGENIC
3R	19339955	3R_19339955_SNP [dm3] 3R_23514233_SNP [dm6]	T	C	7.184e^-5	0.607	UTR_3_PRIME Irk2 INTRON Irk2
3L	17774470	3L_17774470_SNP [dm3] 3L_17781370_SNP [dm6]	G	C	7.231e^-5	0.607	INTERGENIC
3R	18246360	3R_18246360_SNP [dm3] 3R_22420638_SNP [dm6]	T	C	7.253e^-5	0.607	SYNONYMOUS_CODING Nop56 UPSTREAM mats	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11439596	X_11439596_SNP [dm3] X_11545563_SNP [dm6]	A	T	7.254e^-5	0.607	INTRON Drak	TF binding site mE1_TFBS_HSA
3R	7948039	3R_7948039_SNP [dm3] 3R_12122317_SNP [dm6]	G	A	7.347e^-5	0.612	SYNONYMOUS_CODING CG4702	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12828143	3R_12828143_SNP [dm3] 3R_17002421_SNP [dm6]	T	C	7.517e^-5	0.617	UPSTREAM Irc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18246798	3R_18246798_SNP [dm3] 3R_22421076_SNP [dm6]	A	G	7.521e^-5	0.617	UPSTREAM mats & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22612632	3R_22612632_SNP [dm3] 3R_26786910_SNP [dm6]	C	G	7.636e^-5	0.617	INTERGENIC
3R	24094865	3R_24094865_SNP [dm3] 3R_28269143_SNP [dm6]	G	T	7.664e^-5	0.617	INTERGENIC
X	18914751	X_18914751_SNP [dm3] X_19020718_SNP [dm6]	C	A	7.698e^-5	0.617	INTRON CG43759
2L	10793835	2L_10793835_SNP [dm3] 2L_10793835_SNP [dm6]	A	C	7.698e^-5	0.617	INTRON CG31869
2R	12214923	2R_12214923_DEL [dm3] 2R_16327418_DEL [dm6]	AA	A	7.705e^-5	0.617	INTRON Vha44
3R	9608914	3R_9608914_SNP [dm3] 3R_13783192_SNP [dm6]	T	C	7.716e^-5	0.617	INTRON Dip-B
3R	19659371	3R_19659371_SNP [dm3] 3R_23833649_SNP [dm6]	T	C	7.763e^-5	0.617	INTRON CG34355
3L	18449488	3L_18449488_SNP [dm3] 3L_18456388_SNP [dm6]	T	A	7.788e^-5	0.617	DOWNSTREAM CR44670 & 1 other INTERGENIC
3L	17328661	3L_17328661_SNP [dm3] 3L_17335561_SNP [dm6]	T	A	7.800e^-5	0.617	DOWNSTREAM CR44564 INTERGENIC
3L	16200615	3L_16200615_SNP [dm3] 3L_16207515_SNP [dm6]	G	A	7.800e^-5	0.617	INTERGENIC
2L	15277808	2L_15277808_SNP [dm3] 2L_15277808_SNP [dm6]	C	G	7.916e^-5	0.619	EXON CR43682
3R	12828175	3R_12828175_SNP [dm3] 3R_17002453_SNP [dm6]	A	C	7.916e^-5	0.619	UPSTREAM Irc & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	8529970	X_8529970_SNP [dm3] X_8635937_SNP [dm6]	A	G	8.010e^-5	0.619	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11596227	3L_11596227_SNP [dm3] 3L_11603127_SNP [dm6]	T	A	8.039e^-5	0.619	SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	15014658	2L_15014658_SNP [dm3] 2L_15014658_SNP [dm6]	T	C	8.054e^-5	0.619	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19659363	3R_19659363_SNP [dm3] 3R_23833641_SNP [dm6]	A	T	8.056e^-5	0.619	INTRON CG34355
3R	9896509	3R_9896509_SNP [dm3] 3R_14070787_SNP [dm6]	C	T	8.064e^-5	0.619	INTRON foxo
2L	15015069	2L_15015069_SNP [dm3] 2L_15015069_SNP [dm6]	A	C	8.111e^-5	0.619	INTERGENIC
2L	12865264	2L_12865264_DEL [dm3] 2L_12865264_DEL [dm6]	GG	G	8.196e^-5	0.619	INTERGENIC
3R	3614483	3R_3614483_SNP [dm3] 3R_7788761_SNP [dm6]	C	A	8.216e^-5	0.619	NON_SYNONYMOUS_CODING CG18746 UPSTREAM CG18748
3R	12939114	3R_12939114_SNP [dm3] 3R_17113392_SNP [dm6]	G	A	8.219e^-5	0.619	INTRON cher	TF binding site mE1_TFBS_cnc
3R	24659431	3R_24659431_SNP [dm3] 3R_28833709_SNP [dm6]	C	T	8.220e^-5	0.619	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3L	5142064	3L_5142064_SNP [dm3] 3L_5148964_SNP [dm6]	C	T	8.253e^-5	0.619	SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen	TF binding site mE1_TFBS_chinmo
3L	15702438	3L_15702438_SNP [dm3] 3L_15709338_SNP [dm6]	T	C	8.317e^-5	0.621	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6003467	2L_6003467_SNP [dm3] 2L_6003467_SNP [dm6]	A	G	8.349e^-5	0.621	UTR_3_PRIME Tsp26A UPSTREAM CR43866 DOWNSTREAM Gal
3R	3866975	3R_3866975_SNP [dm3] 3R_8041253_SNP [dm6]	G	A	8.413e^-5	0.624	SYNONYMOUS_CODING CG43060
2L	4654529	2L_4654529_SNP [dm3] 2L_4654529_SNP [dm6]	A	G	8.478e^-5	0.626	INTERGENIC
3L	17328616	3L_17328616_SNP [dm3] 3L_17335516_SNP [dm6]	A	T	8.531e^-5	0.628	DOWNSTREAM CR44564 INTERGENIC
3R	24811996	3R_24811996_SNP [dm3] 3R_28986274_SNP [dm6]	T	C	8.619e^-5	0.63	INTERGENIC
3R	12093599	3R_12093599_SNP [dm3] 3R_16267877_SNP [dm6]	C	T	8.631e^-5	0.63	NON_SYNONYMOUS_CODING Mst89B DOWNSTREAM asun & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17162350	2L_17162350_SNP [dm3] 2L_17162350_SNP [dm6]	C	G	8.683e^-5	0.63	INTRON beat-IIIa & 1 other
3R	2550255	3R_2550255_SNP [dm3] 3R_6724533_SNP [dm6]	A	G	8.708e^-5	0.63	INTRON pb	enhancer mE1_CBP_Enhancers regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11904725	3R_11904725_SNP [dm3] 3R_16079003_SNP [dm6]	C	T	8.775e^-5	0.63	UTR_3_PRIME CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo
2R	9203414	2R_9203414_SNP [dm3] 2R_13315909_SNP [dm6]	T	A	8.782e^-5	0.63	INTERGENIC
3L	13925883	3L_13925883_SNP [dm3] 3L_13932783_SNP [dm6]	A	C	8.806e^-5	0.63	SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad
X	11329890	X_11329890_SNP [dm3] X_11435857_SNP [dm6]	C	T	8.829e^-5	0.63	SYNONYMOUS_CODING Evi5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14299067	2R_14299067_INS [dm3] 2R_18411562_INS [dm6]	T	CGGC	8.986e^-5	0.633	UTR_5_PRIME imd UPSTREAM Dp1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	4837489	3R_4837489_SNP [dm3] 3R_9011767_SNP [dm6]	A	G	9.001e^-5	0.633	SYNONYMOUS_CODING CG11984	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12145819	X_12145819_INS [dm3] X_12251786_INS [dm6]	T	TGGGATT	9.004e^-5	0.633	INTRON Ten-a	TF binding site mE1_TFBS_inv
3L	8373422	3L_8373422_SNP [dm3] 3L_8380322_SNP [dm6]	A	G	9.014e^-5	0.633	DOWNSTREAM ImpE1 INTRON ImpE1
2R	4479333	2R_4479333_SNP [dm3] 2R_8591828_SNP [dm6]	G	C	9.107e^-5	0.637	UTR_3_PRIME CG14752 UPSTREAM CG43183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26333978	3R_26333978_SNP [dm3] 3R_30508256_SNP [dm6]	A	G	9.212e^-5	0.642	DOWNSTREAM CG15539 INTRON CG34041
X	6489879	X_6489879_SNP [dm3] X_6595846_SNP [dm6]	G	C	9.314e^-5	0.647	UTR_3_PRIME Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15169724	2L_15169724_SNP [dm3] 2L_15169724_SNP [dm6]	A	G	9.447e^-5	0.65	INTRON CG4168
2R	12214801	2R_12214801_DEL [dm3] 2R_16327296_DEL [dm6]	AA	A	9.461e^-5	0.65	INTRON Vha44
2L	15014818	2L_15014818_SNP [dm3] 2L_15014818_SNP [dm6]	T	A	9.463e^-5	0.65	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14294835	3R_14294835_SNP [dm3] 3R_18469113_SNP [dm6]	G	A	9.547e^-5	0.652	INTRON fru
3L	18099093	3L_18099093_SNP [dm3] 3L_18105993_SNP [dm6]	A	T	9.584e^-5	0.652	UTR_5_PRIME CG13698 UPSTREAM mRpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26332345	3R_26332345_SNP [dm3] 3R_30506623_SNP [dm6]	T	C	9.640e^-5	0.652	SPLICE_SITE_REGION CG15539 UPSTREAM PH4alphaSG1 & 1 other INTRON CG15539
2R	20298375	2R_20298375_SNP [dm3] 2R_24410852_SNP [dm6]	A	G	9.654e^-5	0.652	UTR_5_PRIME SerT UPSTREAM SerT
2L	7402694	2L_7402694_SNP [dm3] 2L_7402694_SNP [dm6]	C	G	9.783e^-5	0.652	UPSTREAM CG5171 INTRON CG5171
3R	21856291	3R_21856291_SNP [dm3] 3R_26030569_SNP [dm6]	T	C	9.789e^-5	0.652	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	23372109	3R_23372109_SNP [dm3] 3R_27546387_SNP [dm6]	T	A	9.790e^-5	0.652	SYNONYMOUS_CODING Gr98d DOWNSTREAM Gr98c
X	15411270	X_15411270_SNP [dm3] X_15517237_SNP [dm6]	T	C	9.801e^-5	0.652	SYNONYMOUS_CODING Ac13E	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
2R	12214418	2R_12214418_SNP [dm3] 2R_16326913_SNP [dm6]	C	T	9.850e^-5	0.652	SPLICE_SITE_REGION Vha44 INTRON Vha44
X	20205789	X_20205789_SNP [dm3] X_20334762_SNP [dm6]	A	G	9.875e^-5	0.652	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	20205790	X_20205790_INS [dm3] X_20334763_INS [dm6]	T	TGGCACGCT	9.875e^-5	0.652	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19464883	3R_19464883_SNP [dm3] 3R_23639161_SNP [dm6]	A	G	9.994e^-5	0.658	INTRON CG31145	TF binding site mE1_TFBS_inv
2R	13904002	2R_13904002_SNP [dm3] 2R_18016497_SNP [dm6]	T	C	1.005e^-4	0.659	INTERGENIC
3R	20340013	3R_20340013_SNP [dm3] 3R_24514291_SNP [dm6]	T	A	1.008e^-4	0.659	UPSTREAM CG13617 INTRON nAChRbeta2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3R	14247913	3R_14247913_SNP [dm3] 3R_18422191_SNP [dm6]	T	G	1.021e^-4	0.659	SYNONYMOUS_CODING fru UTR_3_PRIME fru INTRON fru
2L	1720844	2L_1720844_SNP [dm3] 2L_1720844_SNP [dm6]	G	T	1.022e^-4	0.659	INTRON Rim2
2R	14696310	2R_14696310_SNP [dm3] 2R_18808805_SNP [dm6]	T	G	1.022e^-4	0.659	INTRON CG15096	TF binding site mE1_TFBS_chinmo
3R	1954322	3R_1954322_SNP [dm3] 3R_6128600_SNP [dm6]	A	G	1.033e^-4	0.659	UPSTREAM CR43487 INTERGENIC
3L	10914209	3L_10914209_SNP [dm3] 3L_10921109_SNP [dm6]	A	G	1.037e^-4	0.659	INTERGENIC
2L	12146587	2L_12146587_SNP [dm3] 2L_12146587_SNP [dm6]	G	A	1.038e^-4	0.659	INTRON CG31760
2L	15121426	2L_15121426_SNP [dm3] 2L_15121426_SNP [dm6]	G	A	1.039e^-4	0.659	DOWNSTREAM CR43853 INTERGENIC
3R	12036692	3R_12036692_SNP [dm3] 3R_16210970_SNP [dm6]	T	A	1.047e^-4	0.659	INTERGENIC
2L	6982430	2L_6982430_SNP [dm3] 2L_6982430_SNP [dm6]	C	A	1.047e^-4	0.659	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9980189	2R_9980189_SNP [dm3] 2R_14092684_SNP [dm6]	A	T	1.048e^-4	0.659	DOWNSTREAM CG42288 INTRON Prosap
3L	11023846	3L_11023846_SNP [dm3] 3L_11030746_SNP [dm6]	C	T	1.051e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12858817	2L_12858817_SNP [dm3] 2L_12858817_SNP [dm6]	G	A	1.053e^-4	0.659	INTERGENIC
2R	13418070	2R_13418070_SNP [dm3] 2R_17530565_SNP [dm6]	T	A	1.055e^-4	0.659	INTRON Patronin	TF binding site mE1_TFBS_HSA
2R	19469895	2R_19469895_SNP [dm3] 2R_23582372_SNP [dm6]	G	T	1.063e^-4	0.661	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	13611200	3R_13611200_SNP [dm3] 3R_17785478_SNP [dm6]	C	T	1.066e^-4	0.661	INTRON CG43102
3R	22769144	3R_22769144_SNP [dm3] 3R_26943422_SNP [dm6]	T	C	1.070e^-4	0.661	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	23281481	3R_23281481_SNP [dm3] 3R_27455759_SNP [dm6]	C	A	1.072e^-4	0.661	INTERGENIC
2L	2293457	2L_2293457_SNP [dm3] 2L_2293457_SNP [dm6]	A	G	1.083e^-4	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11575829	3L_11575829_DEL [dm3] 3L_11582729_DEL [dm6]	TTGACTT	T	1.085e^-4	0.663	CODON_DELETION CG32086 UPSTREAM CG33269
3R	26031694	3R_26031694_SNP [dm3] 3R_30205972_SNP [dm6]	T	C	1.087e^-4	0.663	DOWNSTREAM RpS7 & 1 other INTERGENIC
3L	9033481	3L_9033481_SNP [dm3] 3L_9040381_SNP [dm6]	C	G	1.092e^-4	0.663	UPSTREAM Doc1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12213994	2R_12213994_SNP [dm3] 2R_16326489_SNP [dm6]	A	G	1.093e^-4	0.663	SPLICE_SITE_REGION Vha44 INTRON Vha44
X	5845619	X_5845619_SNP [dm3] X_5951586_SNP [dm6]	G	A	1.103e^-4	0.667	UTR_3_PRIME CG32755 UPSTREAM CG6048	TF binding site BDTNP1_TFBS_twi
X	14557687	X_14557687_SNP [dm3] X_14663654_SNP [dm6]	T	G	1.113e^-4	0.67	INTERGENIC
3L	11024371	3L_11024371_SNP [dm3] 3L_11031271_SNP [dm6]	G	T	1.118e^-4	0.67	INTERGENIC	TF binding site mE1_TFBS_cad
3L	673384	3L_673384_SNP [dm3] 3L_673384_SNP [dm6]	C	A	1.125e^-4	0.67	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2L	2337644	2L_2337644_SNP [dm3] 2L_2337644_SNP [dm6]	C	G	1.126e^-4	0.67	INTRON CG9967 & 1 other
3R	12826863	3R_12826863_SNP [dm3] 3R_17001141_SNP [dm6]	T	A	1.128e^-4	0.67	SYNONYMOUS_CODING CG16941	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17747224	2L_17747224_SNP [dm3] 2L_17747224_SNP [dm6]	A	T	1.129e^-4	0.67	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	26333967	3R_26333967_SNP [dm3] 3R_30508245_SNP [dm6]	A	T	1.138e^-4	0.672	DOWNSTREAM CG15539 INTRON CG34041
3R	24821956	3R_24821956_SNP [dm3] 3R_28996234_SNP [dm6]	C	T	1.140e^-4	0.672	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1470108	2L_1470108_SNP [dm3] 2L_1470108_SNP [dm6]	C	G	1.146e^-4	0.672	INTERGENIC
3R	6191945	3R_6191945_SNP [dm3] 3R_10366223_SNP [dm6]	G	A	1.154e^-4	0.672	INTRON Rfx	TF binding site mE1_TFBS_cad
3R	16479672	3R_16479672_SNP [dm3] 3R_20653950_SNP [dm6]	C	T	1.156e^-4	0.672	SYNONYMOUS_CODING Nep4	TF binding site mE1_TFBS_cad
3R	11994096	3R_11994096_SNP [dm3] 3R_16168374_SNP [dm6]	C	G	1.158e^-4	0.672	INTRON CG6006 EXON CR43472	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9404864	2R_9404864_SNP [dm3] 2R_13517359_SNP [dm6]	G	T	1.160e^-4	0.672	UTR_3_PRIME Vmat & 1 other DOWNSTREAM Vmat
X	5540472	X_5540472_SNP [dm3] X_5646439_SNP [dm6]	C	A	1.164e^-4	0.672	INTRON CG42492
3L	516680	3L_516680_SNP [dm3] 3L_516680_SNP [dm6]	A	G	1.169e^-4	0.672	INTRON klar
2L	15028123	2L_15028123_SNP [dm3] 2L_15028123_SNP [dm6]	C	A	1.176e^-4	0.672	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_sens
3R	13691011	3R_13691011_SNP [dm3] 3R_17865289_SNP [dm6]	C	T	1.177e^-4	0.672	SYNONYMOUS_CODING tinc
2R	2912280	2R_2912280_INS [dm3] 2R_7024775_INS [dm6]	A	AAAT	1.183e^-4	0.672	UPSTREAM Tsp42Ef & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17806971	3L_17806971_SNP [dm3] 3L_17813871_SNP [dm6]	C	T	1.188e^-4	0.672	UPSTREAM cln3 INTRON cln3
3R	14413571	3R_14413571_SNP [dm3] 3R_18587849_SNP [dm6]	A	G	1.194e^-4	0.672	SYNONYMOUS_CODING fray INTRON CG7694	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7231254	X_7231254_SNP [dm3] X_7337221_SNP [dm6]	T	C	1.198e^-4	0.672	UPSTREAM CBP INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	12826842	3R_12826842_SNP [dm3] 3R_17001120_SNP [dm6]	T	C	1.198e^-4	0.672	SYNONYMOUS_CODING CG16941	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15435992	X_15435992_SNP [dm3] X_15541959_SNP [dm6]	T	G	1.199e^-4	0.672	INTRON Ac13E
2L	14478322	2L_14478322_SNP [dm3] 2L_14478322_SNP [dm6]	G	C	1.202e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	12931996	3R_12931996_SNP [dm3] 3R_17106274_SNP [dm6]	G	T	1.206e^-4	0.672	SPLICE_SITE_REGION cher INTRON cher
3L	9035870	3L_9035870_SNP [dm3] 3L_9042770_SNP [dm6]	A	G	1.207e^-4	0.672	INTRON Doc1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	5626891	X_5626891_SNP [dm3] X_5732858_SNP [dm6]	T	C	1.209e^-4	0.672	SYNONYMOUS_CODING CG15773 INTRON CG32758	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14900835	2L_14900835_SNP [dm3] 2L_14900835_SNP [dm6]	G	A	1.210e^-4	0.672	INTERGENIC
2L	819425	2L_819425_SNP [dm3] 2L_819425_SNP [dm6]	C	A	1.218e^-4	0.674	START_GAINED CG3876 UTR_5_PRIME CG3876 UPSTREAM Clp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	20301317	2R_20301317_SNP [dm3] 2R_24413794_SNP [dm6]	T	C	1.232e^-4	0.68	SYNONYMOUS_CODING CG45068 UTR_5_PRIME CG45069 UPSTREAM CG45069	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12454569	X_12454569_SNP [dm3] X_12560536_SNP [dm6]	C	T	1.246e^-4	0.681	INTRON CG43921	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	1956520	3R_1956520_SNP [dm3] 3R_6130798_SNP [dm6]	T	C	1.254e^-4	0.681	INTERGENIC
2L	1905108	2L_1905108_SNP [dm3] 2L_1905108_SNP [dm6]	C	A	1.259e^-4	0.681	INTRON CG7337
2L	16172257	2L_16172257_SNP [dm3] 2L_16172257_SNP [dm6]	A	T	1.261e^-4	0.681	SYNONYMOUS_CODING Ca-alpha1D UTR_5_PRIME Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20588122	X_20588122_SNP [dm3] X_20717095_SNP [dm6]	T	A	1.265e^-4	0.681	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	23510318	3R_23510318_INS [dm3] 3R_27684596_INS [dm6]	A	AA	1.267e^-4	0.681	INTERGENIC	TF binding site mE1_TFBS_HSA
X	11439597	X_11439597_SNP [dm3] X_11545564_SNP [dm6]	C	T	1.275e^-4	0.681	INTRON Drak	TF binding site mE1_TFBS_HSA
3R	12829498	3R_12829498_SNP [dm3] 3R_17003776_SNP [dm6]	T	A	1.275e^-4	0.681	INTRON Irc
3R	4582146	3R_4582146_SNP [dm3] 3R_8756424_SNP [dm6]	G	A	1.285e^-4	0.681	DOWNSTREAM CR44228 INTRON CG11768 & 1 other
3R	25013866	3R_25013866_SNP [dm3] 3R_29188144_SNP [dm6]	C	G	1.285e^-4	0.681	INTRON CG14509
3R	20547118	3R_20547118_SNP [dm3] 3R_24721396_SNP [dm6]	A	G	1.287e^-4	0.681	INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1828364	3L_1828364_SNP [dm3] 3L_1828364_SNP [dm6]	A	G	1.293e^-4	0.681	INTRON Cpr62Ba
2R	11006196	2R_11006196_SNP [dm3] 2R_15118691_SNP [dm6]	G	A	1.297e^-4	0.681	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14677697	3R_14677697_SNP [dm3] 3R_18851975_SNP [dm6]	T	G	1.301e^-4	0.681	UPSTREAM CR45633 & 1 other INTERGENIC
3R	14604317	3R_14604317_SNP [dm3] 3R_18778595_SNP [dm6]	G	C	1.306e^-4	0.681	INTRON CG7720
2R	9071244	2R_9071244_SNP [dm3] 2R_13183739_SNP [dm6]	C	G	1.310e^-4	0.681	INTRON CG17724 & 2 others	TF binding site mE1_TFBS_run
3R	9414148	3R_9414148_SNP [dm3] 3R_13588426_SNP [dm6]	C	A	1.314e^-4	0.681	SYNONYMOUS_CODING CG14370
2R	8248997	2R_8248997_SNP [dm3] 2R_12361492_SNP [dm6]	G	C	1.315e^-4	0.681	SYNONYMOUS_CODING CG30043
3R	6187878	3R_6187878_SNP [dm3] 3R_10362156_SNP [dm6]	C	G	1.316e^-4	0.681	UTR_3_PRIME Rfx DOWNSTREAM Rfx & 1 other
2L	15014648	2L_15014648_SNP [dm3] 2L_15014648_SNP [dm6]	T	A	1.320e^-4	0.681	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7423368	2R_7423368_SNP [dm3] 2R_11535863_SNP [dm6]	T	A	1.322e^-4	0.681	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23287258	3R_23287258_SNP [dm3] 3R_27461536_SNP [dm6]	G	C	1.322e^-4	0.681	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	14120935	3L_14120935_SNP [dm3] 3L_14127835_SNP [dm6]	T	A	1.329e^-4	0.681	INTRON Sox21b
3L	10665130	3L_10665130_SNP [dm3] 3L_10672030_SNP [dm6]	T	C	1.329e^-4	0.681	INTRON simj	TF binding site BDTNP1_TFBS_dl
3L	7621237	3L_7621237_SNP [dm3] 3L_7628137_SNP [dm6]	A	G	1.330e^-4	0.681	INTRON CG33275	TF binding site mE1_TFBS_inv
3R	13775827	3R_13775827_SNP [dm3] 3R_17950105_SNP [dm6]	A	G	1.336e^-4	0.681	INTRON cpo	TF binding site mE1_TFBS_inv
3L	10995782	3L_10995782_SNP [dm3] 3L_11002682_SNP [dm6]	A	T	1.338e^-4	0.681	INTRON klu
3R	10605605	3R_10605605_SNP [dm3] 3R_14779883_SNP [dm6]	C	G	1.339e^-4	0.681	INTRON jvl
3L	11009339	3L_11009339_SNP [dm3] 3L_11016239_SNP [dm6]	C	A	1.341e^-4	0.681	INTERGENIC
3L	7621236	3L_7621236_SNP [dm3] 3L_7628136_SNP [dm6]	C	A	1.344e^-4	0.681	INTRON CG33275	TF binding site mE1_TFBS_inv
2R	7423392	2R_7423392_DEL [dm3] 2R_11535887_DEL [dm6]	TTC	GA	1.347e^-4	0.681	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8303114	X_8303114_INS [dm3] X_8409081_INS [dm6]	A	AAA	1.352e^-4	0.681	UTR_3_PRIME lawc UPSTREAM Trf2 INTRON lawc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	3401055	3R_3401055_SNP [dm3] 3R_7575333_SNP [dm6]	C	T	1.354e^-4	0.681	INTRON CG34127
2L	18325633	2L_18325633_SNP [dm3] 2L_18325633_SNP [dm6]	T	A	1.364e^-4	0.684	INTRON Fas3
3R	13823760	3R_13823760_SNP [dm3] 3R_17998038_SNP [dm6]	C	G	1.376e^-4	0.684	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	7423363	2R_7423363_SNP [dm3] 2R_11535858_SNP [dm6]	C	T	1.379e^-4	0.684	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	4657818	2R_4657818_SNP [dm3] 2R_8770313_SNP [dm6]	T	A	1.407e^-4	0.684	INTERGENIC
2L	4753460	2L_4753460_SNP [dm3] 2L_4753460_SNP [dm6]	C	A	1.408e^-4	0.684	INTRON CG15630
3R	10183658	3R_10183658_SNP [dm3] 3R_14357936_SNP [dm6]	A	T	1.412e^-4	0.684	DOWNSTREAM CG31320 INTRON NK7.1
3R	13397525	3R_13397525_SNP [dm3] 3R_17571803_SNP [dm6]	A	C	1.415e^-4	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	4256091	3R_4256091_SNP [dm3] 3R_8430369_SNP [dm6]	T	C	1.420e^-4	0.684	INTRON CG45263
2R	9203373	2R_9203373_SNP [dm3] 2R_13315868_SNP [dm6]	G	A	1.421e^-4	0.684	INTERGENIC
3R	6123849	3R_6123849_SNP [dm3] 3R_10298127_SNP [dm6]	G	C	1.422e^-4	0.684	INTRON CG43143
2R	7423343	2R_7423343_SNP [dm3] 2R_11535838_SNP [dm6]	T	A	1.425e^-4	0.684	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	17830630	3R_17830630_SNP [dm3] 3R_22004908_SNP [dm6]	G	A	1.427e^-4	0.684	SYNONYMOUS_CODING Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15075076	3R_15075076_SNP [dm3] 3R_19249354_SNP [dm6]	C	T	1.433e^-4	0.684	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	6737539	2L_6737539_SNP [dm3] 2L_6737539_SNP [dm6]	A	G	1.435e^-4	0.684	INTRON TTLL3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15411285	X_15411285_SNP [dm3] X_15517252_SNP [dm6]	C	T	1.449e^-4	0.684	SYNONYMOUS_CODING Ac13E	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
3R	9894573	3R_9894573_SNP [dm3] 3R_14068851_SNP [dm6]	G	T	1.449e^-4	0.684	INTRON foxo
3R	25327771	3R_25327771_SNP [dm3] 3R_29502049_SNP [dm6]	T	A	1.469e^-4	0.684	NON_SYNONYMOUS_CODING Trc8	TF binding site mE1_TFBS_chinmo
2L	15167387	2L_15167387_SNP [dm3] 2L_15167387_SNP [dm6]	C	T	1.473e^-4	0.684	SYNONYMOUS_CODING CG4168
2L	16604626	2L_16604626_SNP [dm3] 2L_16604626_SNP [dm6]	T	G	1.474e^-4	0.684	INTRON CG42389
3L	11017214	3L_11017214_SNP [dm3] 3L_11024114_SNP [dm6]	A	G	1.476e^-4	0.684	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1720839	2L_1720839_SNP [dm3] 2L_1720839_SNP [dm6]	A	G	1.477e^-4	0.684	INTRON Rim2
3L	6999666	3L_6999666_SNP [dm3] 3L_7006566_SNP [dm6]	C	G	1.481e^-4	0.684	INTRON Mp
3L	11575623	3L_11575623_SNP [dm3] 3L_11582523_SNP [dm6]	C	T	1.487e^-4	0.684	SYNONYMOUS_CODING CG32086 UPSTREAM CG33269
X	2177312	X_2177312_SNP [dm3] X_2283279_SNP [dm6]	T	G	1.492e^-4	0.684	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
2R	4479322	2R_4479322_SNP [dm3] 2R_8591817_SNP [dm6]	G	A	1.495e^-4	0.684	SYNONYMOUS_CODING CG14752 UPSTREAM CG43183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4515416	2L_4515416_SNP [dm3] 2L_4515416_SNP [dm6]	C	A	1.498e^-4	0.684	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6390425	3L_6390425_SNP [dm3] 3L_6397325_SNP [dm6]	C	A	1.501e^-4	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	15991401	3L_15991401_SNP [dm3] 3L_15998301_SNP [dm6]	C	T	1.502e^-4	0.684	INTRON CG5830
3R	12139910	3R_12139910_SNP [dm3] 3R_16314188_SNP [dm6]	A	C	1.508e^-4	0.684	INTRON Sulf1
3R	11862152	3R_11862152_SNP [dm3] 3R_16036430_SNP [dm6]	T	C	1.516e^-4	0.684	INTRON pnr
X	10851671	X_10851671_SNP [dm3] X_10957638_SNP [dm6]	G	A	1.518e^-4	0.684	INTRON Myo10A
3R	26333819	3R_26333819_SNP [dm3] 3R_30508097_SNP [dm6]	C	G	1.520e^-4	0.684	NON_SYNONYMOUS_CODING CG34041 DOWNSTREAM CG15539
3L	12186593	3L_12186593_SNP [dm3] 3L_12193493_SNP [dm6]	A	G	1.522e^-4	0.684	SPLICE_SITE_REGION thoc6 SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
2L	2254786	2L_2254786_SNP [dm3] 2L_2254786_SNP [dm6]	C	T	1.524e^-4	0.684	SYNONYMOUS_CODING Send1 DOWNSTREAM CG17234
3L	11596200	3L_11596200_SNP [dm3] 3L_11603100_SNP [dm6]	G	C	1.526e^-4	0.684	SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	14290044	3R_14290044_SNP [dm3] 3R_18464322_SNP [dm6]	A	T	1.529e^-4	0.684	INTRON fru
3L	11596536	3L_11596536_SNP [dm3] 3L_11603436_SNP [dm6]	C	T	1.538e^-4	0.684	SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10970458	X_10970458_SNP [dm3] X_11076425_SNP [dm6]	A	G	1.540e^-4	0.684	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
2R	9466925	2R_9466925_SNP [dm3] 2R_13579420_SNP [dm6]	C	G	1.541e^-4	0.684	DOWNSTREAM CG6191 EXON CR44366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	18914832	X_18914832_SNP [dm3] X_19020799_SNP [dm6]	C	T	1.544e^-4	0.684	INTRON CG43759
2L	14700496	2L_14700496_SNP [dm3] 2L_14700496_SNP [dm6]	T	A	1.544e^-4	0.684	INTERGENIC
3R	14290007	3R_14290007_SNP [dm3] 3R_18464285_SNP [dm6]	G	A	1.546e^-4	0.684	INTRON fru
2L	14700498	2L_14700498_SNP [dm3] 2L_14700498_SNP [dm6]	A	G	1.549e^-4	0.684	INTERGENIC
2R	4481638	2R_4481638_SNP [dm3] 2R_8594133_SNP [dm6]	T	C	1.550e^-4	0.684	UTR_3_PRIME CG8736	TF binding site mE1_TFBS_chinmo
2R	3076529	2R_3076529_SNP [dm3] 2R_7189024_SNP [dm6]	C	T	1.560e^-4	0.684	INTRON pk
2L	14480830	2L_14480830_SNP [dm3] 2L_14480830_SNP [dm6]	A	G	1.563e^-4	0.684	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9203412	2R_9203412_SNP [dm3] 2R_13315907_SNP [dm6]	T	C	1.575e^-4	0.684	INTERGENIC
3R	21265064	3R_21265064_SNP [dm3] 3R_25439342_SNP [dm6]	A	G	1.577e^-4	0.684	INTRON Fur1
3L	22216150	3L_22216150_SNP [dm3] 3L_22223050_SNP [dm6]	T	C	1.584e^-4	0.684	INTRON olf413
2R	12214344	2R_12214344_SNP [dm3] 2R_16326839_SNP [dm6]	G	A	1.588e^-4	0.684	SYNONYMOUS_CODING Vha44
3L	22186521	3L_22186521_SNP [dm3] 3L_22193421_SNP [dm6]	T	A	1.588e^-4	0.684	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19380428	X_19380428_SNP [dm3] X_19486395_SNP [dm6]	C	T	1.591e^-4	0.684	UPSTREAM CR43260 INTRON pcm	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	18600628	3L_18600628_SNP [dm3] 3L_18607528_SNP [dm6]	C	T	1.593e^-4	0.684	SYNONYMOUS_CODING CG18231 DOWNSTREAM CG18233 INTRON CG4174 & 1 other
3R	25890503	3R_25890503_SNP [dm3] 3R_30064781_SNP [dm6]	G	A	1.594e^-4	0.684	INTRON sima	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20530786	2L_20530786_SNP [dm3] 2L_20530786_SNP [dm6]	C	T	1.596e^-4	0.684	UPSTREAM CG44270 INTERGENIC
2L	20534053	2L_20534053_SNP [dm3] 2L_20534053_SNP [dm6]	T	C	1.598e^-4	0.684	INTERGENIC
X	18417488	X_18417488_SNP [dm3] X_18523455_SNP [dm6]	T	A	1.608e^-4	0.684	INTRON Bx	TF binding site BDTNP1_TFBS_dl
2R	12117050	2R_12117050_SNP [dm3] 2R_16229545_SNP [dm6]	C	T	1.614e^-4	0.684	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18438190	3L_18438190_INS [dm3] 3L_18445090_INS [dm6]	C	CG	1.616e^-4	0.684	INTERGENIC
3R	23281799	3R_23281799_SNP [dm3] 3R_27456077_SNP [dm6]	G	T	1.619e^-4	0.684	INTERGENIC
2R	17380232	2R_17380232_INS [dm3] 2R_21492727_INS [dm6]	A	AGCA	1.625e^-4	0.684	INTRON Fkbp14
3R	1956565	3R_1956565_SNP [dm3] 3R_6130843_SNP [dm6]	T	A	1.627e^-4	0.684	INTERGENIC
3L	10709568	3L_10709568_SNP [dm3] 3L_10716468_SNP [dm6]	T	G	1.628e^-4	0.684	INTERGENIC
3R	9971023	3R_9971023_SNP [dm3] 3R_14145301_SNP [dm6]	G	A	1.639e^-4	0.684	INTERGENIC
X	20588027	X_20588027_SNP [dm3] X_20717000_SNP [dm6]	G	C	1.646e^-4	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	7066157	2L_7066157_SNP [dm3] 2L_7066157_SNP [dm6]	T	A	1.647e^-4	0.684	UPSTREAM Nuf2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20588003	X_20588003_SNP [dm3] X_20716976_SNP [dm6]	C	T	1.651e^-4	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	11314964	3L_11314964_SNP [dm3] 3L_11321864_SNP [dm6]	A	T	1.652e^-4	0.684	UPSTREAM CG6168 INTERGENIC
3L	20788868	3L_20788868_SNP [dm3] 3L_20795768_SNP [dm6]	T	C	1.654e^-4	0.684	UPSTREAM CR43705 DOWNSTREAM CR43706 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11016661	2R_11016661_SNP [dm3] 2R_15129156_SNP [dm6]	G	A	1.658e^-4	0.684	UTR_5_PRIME chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	11597161	3L_11597161_SNP [dm3] 3L_11604061_SNP [dm6]	A	G	1.664e^-4	0.684	SYNONYMOUS_CODING CG7368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2177439	X_2177439_SNP [dm3] X_2283406_SNP [dm6]	G	C	1.664e^-4	0.684	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
3R	6980115	3R_6980115_SNP [dm3] 3R_11154393_SNP [dm6]	A	T	1.669e^-4	0.684	UPSTREAM Ugt86Dc & 1 other INTERGENIC
3L	18155807	3L_18155807_SNP [dm3] 3L_18162707_SNP [dm6]	A	C	1.670e^-4	0.684	UPSTREAM CG13699 INTERGENIC
3R	20341109	3R_20341109_SNP [dm3] 3R_24515387_SNP [dm6]	C	A	1.670e^-4	0.684	UTR_5_PRIME CG13617 UPSTREAM CG13617 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18042732	3R_18042732_SNP [dm3] 3R_22217010_SNP [dm6]	G	A	1.673e^-4	0.684	UTR_3_PRIME Gld2 INTRON SKIP
X	5616941	X_5616941_SNP [dm3] X_5722908_SNP [dm6]	A	G	1.676e^-4	0.684	SYNONYMOUS_CODING CG32758	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12825593	3R_12825593_SNP [dm3] 3R_16999871_SNP [dm6]	A	G	1.680e^-4	0.684	DOWNSTREAM CG3534 INTRON CG16941
3L	16328925	3L_16328925_SNP [dm3] 3L_16335825_SNP [dm6]	A	T	1.687e^-4	0.684	INTERGENIC
3L	2316461	3L_2316461_SNP [dm3] 3L_2316461_SNP [dm6]	G	A	1.688e^-4	0.684	DOWNSTREAM CR45427 INTERGENIC
X	13619821	X_13619821_SNP [dm3] X_13725788_SNP [dm6]	T	C	1.689e^-4	0.684	SYNONYMOUS_CODING mus101	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13965300	2R_13965300_SNP [dm3] 2R_18077795_SNP [dm6]	C	T	1.689e^-4	0.684	INTRON CG34386
3R	20696851	3R_20696851_SNP [dm3] 3R_24871129_SNP [dm6]	C	G	1.698e^-4	0.684	UPSTREAM CycB3 DOWNSTREAM CG3744 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13886674	3L_13886674_SNP [dm3] 3L_13893574_SNP [dm6]	G	A	1.698e^-4	0.684	INTRON dysc
3R	17830711	3R_17830711_SNP [dm3] 3R_22004989_SNP [dm6]	G	A	1.700e^-4	0.684	SYNONYMOUS_CODING Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4892706	3R_4892706_SNP [dm3] 3R_9066984_SNP [dm6]	A	G	1.701e^-4	0.684	UTR_3_PRIME pum DOWNSTREAM Ada & 1 other
X	18566257	X_18566257_INS [dm3] X_18672224_INS [dm6]	T	TAAAAAACGTAT...	1.705e^-4	0.684	INTERGENIC
3L	11009341	3L_11009341_SNP [dm3] 3L_11016241_SNP [dm6]	A	C	1.707e^-4	0.684	INTERGENIC
3L	12424320	3L_12424320_SNP [dm3] 3L_12431220_SNP [dm6]	A	C	1.708e^-4	0.684	INTRON toe
3L	6999663	3L_6999663_SNP [dm3] 3L_7006563_SNP [dm6]	G	T	1.712e^-4	0.684	INTRON Mp
3R	25007165	3R_25007165_SNP [dm3] 3R_29181443_SNP [dm6]	C	T	1.717e^-4	0.684	NON_SYNONYMOUS_CODING CG14509
2L	12855238	2L_12855238_SNP [dm3] 2L_12855238_SNP [dm6]	C	T	1.718e^-4	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	20298491	2R_20298491_SNP [dm3] 2R_24410968_SNP [dm6]	A	C	1.718e^-4	0.684	START_GAINED SerT UTR_5_PRIME SerT UPSTREAM SerT & 2 others
3R	14067058	3R_14067058_SNP [dm3] 3R_18241336_SNP [dm6]	T	A	1.725e^-4	0.684	NON_SYNONYMOUS_CODING CG7156 UTR_3_PRIME CG7156	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	12834121	3L_12834121_SNP [dm3] 3L_12841021_SNP [dm6]	T	C	1.734e^-4	0.684	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	7552952	3R_7552952_SNP [dm3] 3R_11727230_SNP [dm6]	G	A	1.736e^-4	0.684	NON_SYNONYMOUS_CODING CG12594	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12165198	2R_12165198_DEL [dm3] 2R_16277693_DEL [dm6]	TA	T	1.741e^-4	0.684	UTR_3_PRIME cato DOWNSTREAM CG33017	TF binding site mE1_TFBS_chinmo
3L	22194081	3L_22194081_SNP [dm3] 3L_22200981_SNP [dm6]	A	G	1.743e^-4	0.684	INTRON olf413
3R	3848009	3R_3848009_SNP [dm3] 3R_8022287_SNP [dm6]	A	C	1.747e^-4	0.684	INTRON CG2747
3R	13908274	3R_13908274_SNP [dm3] 3R_18082552_SNP [dm6]	A	T	1.749e^-4	0.684	UTR_3_PRIME CG14317	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna
3L	7625468	3L_7625468_INS [dm3] 3L_7632368_INS [dm6]	TG	ACAA	1.750e^-4	0.684	INTRON CG33275	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14992736	3R_14992736_SNP [dm3] 3R_19167014_SNP [dm6]	A	T	1.750e^-4	0.684	INTRON sqz
3R	18809564	3R_18809564_SNP [dm3] 3R_22983842_SNP [dm6]	T	A	1.753e^-4	0.684	INTRON Nha2
3R	4673415	3R_4673415_SNP [dm3] 3R_8847693_SNP [dm6]	T	A	1.754e^-4	0.684	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9028405	2L_9028405_SNP [dm3] 2L_9028405_SNP [dm6]	C	G	1.764e^-4	0.684	INTRON CG9582 & 1 other
3L	9873577	3L_9873577_SNP [dm3] 3L_9880477_SNP [dm6]	T	C	1.765e^-4	0.684	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
2L	14996300	2L_14996300_SNP [dm3] 2L_14996300_SNP [dm6]	T	C	1.767e^-4	0.684	INTRON mol	TF binding site BDTNP1_TFBS_dl
3R	12037542	3R_12037542_SNP [dm3] 3R_16211820_SNP [dm6]	C	T	1.771e^-4	0.684	INTERGENIC
3R	12738262	3R_12738262_SNP [dm3] 3R_16912540_SNP [dm6]	C	T	1.771e^-4	0.684	INTRON iab-8
X	18417296	X_18417296_INS [dm3] X_18523263_INS [dm6]	C	CCCCCCACAATAT...	1.772e^-4	0.684	UPSTREAM CG6481 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8548324	3L_8548324_SNP [dm3] 3L_8555224_SNP [dm6]	T	C	1.777e^-4	0.684	INTRON rhea
3R	12325877	3R_12325877_SNP [dm3] 3R_16500155_SNP [dm6]	G	T	1.791e^-4	0.684	INTRON decay
3L	5341289	3L_5341289_SNP [dm3] 3L_5348189_SNP [dm6]	C	T	1.793e^-4	0.684	INTRON lama
2R	3226552	2R_3226552_SNP [dm3] 2R_7339047_SNP [dm6]	A	G	1.795e^-4	0.684	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
3L	11305906	3L_11305906_SNP [dm3] 3L_11312806_SNP [dm6]	A	G	1.795e^-4	0.684	SYNONYMOUS_CODING CG7573
2R	6140788	2R_6140788_SNP [dm3] 2R_10253283_SNP [dm6]	C	G	1.801e^-4	0.684	SYNONYMOUS_CODING CG12913 UPSTREAM Syb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19905119	3R_19905119_SNP [dm3] 3R_24079397_SNP [dm6]	C	T	1.802e^-4	0.684	INTRON 4EHP
3L	8868644	3L_8868644_SNP [dm3] 3L_8875544_SNP [dm6]	A	G	1.803e^-4	0.684	INTRON dally
3R	14144836	3R_14144836_SNP [dm3] 3R_18319114_SNP [dm6]	A	T	1.804e^-4	0.684	INTRON CG31235
3L	12733199	3L_12733199_SNP [dm3] 3L_12740099_SNP [dm6]	G	T	1.805e^-4	0.684	INTRON Ptp69D	TF binding site mE1_TFBS_sens
2L	2767296	2L_2767296_SNP [dm3] 2L_2767296_SNP [dm6]	A	C	1.813e^-4	0.684	UTR_3_PRIME Taf10b UPSTREAM Taf10 DOWNSTREAM aph-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	20205794	X_20205794_SNP [dm3] X_20334767_SNP [dm6]	T	A	1.814e^-4	0.684	INTERGENIC
3L	17340177	3L_17340177_SNP [dm3] 3L_17347077_SNP [dm6]	C	T	1.816e^-4	0.684	INTRON Mip	TF binding site mE1_TFBS_chinmo
2L	11362307	2L_11362307_SNP [dm3] 2L_11362307_SNP [dm6]	T	A	1.820e^-4	0.684	INTRON salr	regulatory region REDfly_CRMs
2L	4007228	2L_4007228_DEL [dm3] 2L_4007228_DEL [dm6]	CTTGC	C	1.821e^-4	0.684	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
3R	23289182	3R_23289182_SNP [dm3] 3R_27463460_SNP [dm6]	T	A	1.825e^-4	0.684	UPSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15411279	X_15411279_SNP [dm3] X_15517246_SNP [dm6]	T	G	1.827e^-4	0.684	SYNONYMOUS_CODING Ac13E	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
2L	10149039	2L_10149039_SNP [dm3] 2L_10149039_SNP [dm6]	A	T	1.833e^-4	0.684	INTRON CG44153 & 1 other
3R	17693804	3R_17693804_SNP [dm3] 3R_21868082_SNP [dm6]	A	T	1.834e^-4	0.684	UTR_5_PRIME Cby UPSTREAM Cby & 1 other DOWNSTREAM CG31174
3R	14202141	3R_14202141_SNP [dm3] 3R_18376419_SNP [dm6]	A	G	1.844e^-4	0.684	EXON CR44946
3L	17167769	3L_17167769_SNP [dm3] 3L_17174669_SNP [dm6]	C	G	1.845e^-4	0.684	INTRON Rbp6
2L	1905112	2L_1905112_SNP [dm3] 2L_1905112_SNP [dm6]	T	G	1.849e^-4	0.684	INTRON CG7337
2R	2486335	2R_2486335_SNP [dm3] 2R_6598830_SNP [dm6]	T	C	1.855e^-4	0.684	INTRON jing	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25890490	3R_25890490_SNP [dm3] 3R_30064768_SNP [dm6]	T	G	1.856e^-4	0.684	INTRON sima	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18566260	X_18566260_SNP [dm3] X_18672227_SNP [dm6]	C	A	1.859e^-4	0.684	INTERGENIC
2L	12945701	2L_12945701_DEL [dm3] 2L_12945701_DEL [dm6]	ATTTA	A	1.859e^-4	0.684	INTERGENIC
3L	7119481	3L_7119481_SNP [dm3] 3L_7126381_SNP [dm6]	A	C	1.862e^-4	0.684	SYNONYMOUS_CODING BBS1 UPSTREAM msl-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18220392	3L_18220392_SNP [dm3] 3L_18227292_SNP [dm6]	C	T	1.867e^-4	0.684	INTERGENIC
3R	25396049	3R_25396049_SNP [dm3] 3R_29570327_SNP [dm6]	T	G	1.868e^-4	0.684	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21543213	3R_21543213_INS [dm3] 3R_25717491_INS [dm6]	T	TC	1.873e^-4	0.684	INTRON LpR2
3L	14120943	3L_14120943_SNP [dm3] 3L_14127843_SNP [dm6]	A	G	1.875e^-4	0.684	INTRON Sox21b
3R	9900625	3R_9900625_SNP [dm3] 3R_14074903_SNP [dm6]	A	G	1.878e^-4	0.684	INTRON foxo
3R	14465614	3R_14465614_SNP [dm3] 3R_18639892_SNP [dm6]	A	G	1.884e^-4	0.685	INTRON qin & 1 other
3R	7947723	3R_7947723_SNP [dm3] 3R_12122001_SNP [dm6]	A	T	1.904e^-4	0.689	INTRON CG4702
3L	1627987	3L_1627987_SNP [dm3] 3L_1627987_SNP [dm6]	G	C	1.909e^-4	0.689	UTR_5_PRIME CG13928 INTRON GC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15989431	3L_15989431_SNP [dm3] 3L_15996331_SNP [dm6]	A	G	1.910e^-4	0.689	INTRON CG5830
2R	11477209	2R_11477209_INS [dm3] 2R_15589704_INS [dm6]	A	ACATACATA	1.913e^-4	0.689	INTERGENIC
2L	15013169	2L_15013169_SNP [dm3] 2L_15013169_SNP [dm6]	C	T	1.913e^-4	0.689	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20305429	2R_20305429_SNP [dm3] 2R_24417906_SNP [dm6]	A	T	1.917e^-4	0.689	INTRON prom	TF binding site mE1_TFBS_chinmo
3R	14681841	3R_14681841_SNP [dm3] 3R_18856119_SNP [dm6]	C	A	1.920e^-4	0.689	INTERGENIC
2R	15443178	2R_15443178_SNP [dm3] 2R_19555673_SNP [dm6]	T	C	1.928e^-4	0.689	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2443401	X_2443401_DEL [dm3] X_2549368_DEL [dm6]	TCCAATTA	T	1.932e^-4	0.689	INTERGENIC
2R	9736922	2R_9736922_SNP [dm3] 2R_13849417_SNP [dm6]	G	C	1.933e^-4	0.689	NON_SYNONYMOUS_CODING CG30484 UPSTREAM CG30485
3R	21520548	3R_21520548_SNP [dm3] 3R_25694826_SNP [dm6]	A	C	1.944e^-4	0.689	INTERGENIC
3R	7946934	3R_7946934_DEL [dm3] 3R_12121212_DEL [dm6]	AAAATTTGATTTAAGCCC...	G	1.945e^-4	0.689	DOWNSTREAM CG4702 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	2619287	2R_2619287_SNP [dm3] 2R_6731782_SNP [dm6]	G	T	1.950e^-4	0.689	INTRON l_2_01289
2R	8965226	2R_8965226_SNP [dm3] 2R_13077721_SNP [dm6]	G	A	1.950e^-4	0.689	INTRON Drl-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12633680	3R_12633680_SNP [dm3] 3R_16807958_SNP [dm6]	G	C	1.952e^-4	0.689	UTR_3_PRIME abd-A
2L	11676258	2L_11676258_SNP [dm3] 2L_11676258_SNP [dm6]	A	G	1.954e^-4	0.689	INTERGENIC
2L	21797105	2L_21797105_SNP [dm3] 2L_21797105_SNP [dm6]	G	A	1.974e^-4	0.689	DOWNSTREAM CR44269 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5074829	3L_5074829_SNP [dm3] 3L_5074829_SNP [dm6]	C	T	1.975e^-4	0.689	INTRON Con
2L	10793863	2L_10793863_SNP [dm3] 2L_10793863_SNP [dm6]	C	T	1.975e^-4	0.689	INTRON CG31869
3R	3802600	3R_3802600_INS [dm3] 3R_7976878_INS [dm6]	T	TATGT	1.976e^-4	0.689	INTRON CD98hc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13965732	2R_13965732_SNP [dm3] 2R_18078227_SNP [dm6]	G	A	1.980e^-4	0.689	INTRON CG34386
3R	17826475	3R_17826475_SNP [dm3] 3R_22000753_SNP [dm6]	C	A	1.986e^-4	0.689	INTRON Eip93F
X	18567310	X_18567310_SNP [dm3] X_18673277_SNP [dm6]	C	T	1.987e^-4	0.689	INTERGENIC
2L	13399455	2L_13399455_INS [dm3] 2L_13399455_INS [dm6]	A	AAGA	1.987e^-4	0.689	UPSTREAM CG10859 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	14700490	2L_14700490_INS [dm3] 2L_14700490_INS [dm6]	A	TG	1.988e^-4	0.689	INTERGENIC
X	4108437	X_4108437_SNP [dm3] X_4214404_SNP [dm6]	G	A	2.000e^-4	0.69	DOWNSTREAM CG43288 INTERGENIC
2L	12325508	2L_12325508_SNP [dm3] 2L_12325508_SNP [dm6]	A	T	2.001e^-4	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4513174	2L_4513174_SNP [dm3] 2L_4513174_SNP [dm6]	G	A	2.004e^-4	0.69	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16200616	3L_16200616_SNP [dm3] 3L_16207516_SNP [dm6]	A	T	2.005e^-4	0.69	INTERGENIC
3L	8025593	3L_8025593_SNP [dm3] 3L_8032493_SNP [dm6]	T	G	2.020e^-4	0.69	INTRON nmo
2L	20267129	2L_20267129_SNP [dm3] 2L_20267129_SNP [dm6]	G	T	2.023e^-4	0.69	INTERGENIC
3L	590108	3L_590108_SNP [dm3] 3L_590108_SNP [dm6]	G	A	2.024e^-4	0.69	UPSTREAM Kah INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12709953	3R_12709953_SNP [dm3] 3R_16884231_SNP [dm6]	G	C	2.024e^-4	0.69	INTRON iab-8
3R	22588155	3R_22588155_SNP [dm3] 3R_26762433_SNP [dm6]	C	T	2.024e^-4	0.69	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13397511	3R_13397511_SNP [dm3] 3R_17571789_SNP [dm6]	T	G	2.027e^-4	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	6980101	3R_6980101_SNP [dm3] 3R_11154379_SNP [dm6]	G	T	2.042e^-4	0.693	UPSTREAM Ugt86Dc & 1 other INTERGENIC
3R	12031547	3R_12031547_SNP [dm3] 3R_16205825_SNP [dm6]	G	A	2.045e^-4	0.693	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	12325856	3R_12325856_SNP [dm3] 3R_16500134_SNP [dm6]	A	G	2.045e^-4	0.693	INTRON decay
X	5848120	X_5848120_SNP [dm3] X_5954087_SNP [dm6]	A	T	2.060e^-4	0.693	DOWNSTREAM CG6048 INTERGENIC
3R	25890505	3R_25890505_SNP [dm3] 3R_30064783_SNP [dm6]	G	C	2.061e^-4	0.693	INTRON sima	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3081645	X_3081645_SNP [dm3] X_3187612_SNP [dm6]	C	A	2.061e^-4	0.693	INTRON dnc
2L	6746336	2L_6746336_SNP [dm3] 2L_6746336_SNP [dm6]	A	G	2.063e^-4	0.693	UPSTREAM CG31910 INTRON CG11221
X	12422708	X_12422708_SNP [dm3] X_12528675_SNP [dm6]	A	C	2.070e^-4	0.693	INTRON CG43921
X	15435938	X_15435938_SNP [dm3] X_15541905_SNP [dm6]	C	T	2.072e^-4	0.693	INTRON Ac13E
2L	17570592	2L_17570592_SNP [dm3] 2L_17570592_SNP [dm6]	C	T	2.077e^-4	0.693	INTERGENIC
3L	15991217	3L_15991217_SNP [dm3] 3L_15998117_SNP [dm6]	G	C	2.084e^-4	0.693	INTRON CG5830
X	13619779	X_13619779_SNP [dm3] X_13725746_SNP [dm6]	A	G	2.086e^-4	0.693	SYNONYMOUS_CODING mus101	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
X	3926549	X_3926549_SNP [dm3] X_4032516_SNP [dm6]	T	G	2.087e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15148877	2R_15148877_SNP [dm3] 2R_19261372_SNP [dm6]	A	C	2.087e^-4	0.693	NON_SYNONYMOUS_CODING CG7229	TF binding site mE1_TFBS_sens
3R	22641989	3R_22641989_SNP [dm3] 3R_26816267_SNP [dm6]	A	T	2.093e^-4	0.693	INTRON Tl
2R	13965351	2R_13965351_SNP [dm3] 2R_18077846_SNP [dm6]	G	A	2.105e^-4	0.696	INTRON CG34386
3L	15989703	3L_15989703_SNP [dm3] 3L_15996603_SNP [dm6]	G	A	2.112e^-4	0.696	INTRON CG5830
2R	14299377	2R_14299377_SNP [dm3] 2R_18411872_SNP [dm6]	A	T	2.114e^-4	0.696	UPSTREAM Dp1 & 1 other INTRON imd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	2160285	3L_2160285_SNP [dm3] 3L_2160285_SNP [dm6]	T	A	2.114e^-4	0.696	SPLICE_SITE_REGION CG15822 INTRON CG15822
3L	11596770	3L_11596770_SNP [dm3] 3L_11603670_SNP [dm6]	C	A	2.119e^-4	0.696	NON_SYNONYMOUS_CODING CG7368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7897224	X_7897224_SNP [dm3] X_8003191_SNP [dm6]	T	C	2.142e^-4	0.699	INTRON Tbh
3R	9968874	3R_9968874_SNP [dm3] 3R_14143152_SNP [dm6]	C	A	2.145e^-4	0.699	INTERGENIC
3R	14390438	3R_14390438_SNP [dm3] 3R_18564716_SNP [dm6]	T	C	2.155e^-4	0.699	NON_SYNONYMOUS_CODING CG43210 UTR_3_PRIME CG43194
3R	14449414	3R_14449414_SNP [dm3] 3R_18623692_SNP [dm6]	T	C	2.156e^-4	0.699	INTRON qin
3R	14449417	3R_14449417_SNP [dm3] 3R_18623695_SNP [dm6]	G	T	2.156e^-4	0.699	INTRON qin
2L	18323745	2L_18323745_SNP [dm3] 2L_18323745_SNP [dm6]	T	A	2.157e^-4	0.699	INTRON Fas3
X	5540447	X_5540447_SNP [dm3] X_5646414_SNP [dm6]	A	G	2.157e^-4	0.699	INTRON CG42492
2R	8162215	2R_8162215_SNP [dm3] 2R_12274710_SNP [dm6]	C	T	2.165e^-4	0.699	UTR_3_PRIME Cam DOWNSTREAM Cam
3R	13815802	3R_13815802_SNP [dm3] 3R_17990080_SNP [dm6]	C	A	2.172e^-4	0.699	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14142617	3R_14142617_SNP [dm3] 3R_18316895_SNP [dm6]	A	T	2.180e^-4	0.699	UTR_3_PRIME CG31235 DOWNSTREAM CG31235
3R	10395018	3R_10395018_SNP [dm3] 3R_14569296_SNP [dm6]	A	C	2.183e^-4	0.699	SYNONYMOUS_CODING Cys UPSTREAM CG8066 EXON CR44095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	21191511	2L_21191511_INS [dm3] 2L_21191511_INS [dm6]	A	AA	2.187e^-4	0.699	INTRON Ret	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl
3R	12932546	3R_12932546_SNP [dm3] 3R_17106824_SNP [dm6]	C	T	2.191e^-4	0.699	SYNONYMOUS_CODING cher INTRON cher	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19550960	2R_19550960_SNP [dm3] 2R_23663437_SNP [dm6]	C	A	2.195e^-4	0.699	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12241840	3L_12241840_DEL [dm3] 3L_12248740_DEL [dm6]	ATCAAATAG	A	2.197e^-4	0.699	INTRON app
3R	14134540	3R_14134540_SNP [dm3] 3R_18308818_SNP [dm6]	G	A	2.200e^-4	0.699	INTRON PKD
3R	19590997	3R_19590997_SNP [dm3] 3R_23765275_SNP [dm6]	A	T	2.205e^-4	0.699	INTRON Lsd-1
2R	8482443	2R_8482443_SNP [dm3] 2R_12594938_SNP [dm6]	G	C	2.205e^-4	0.699	INTRON Amph EXON CR43909
3R	12704950	3R_12704950_SNP [dm3] 3R_16879228_SNP [dm6]	A	C	2.206e^-4	0.699	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	13261826	3L_13261826_SNP [dm3] 3L_13268726_SNP [dm6]	T	G	2.220e^-4	0.699	INTRON caps
X	9239135	X_9239135_SNP [dm3] X_9345102_SNP [dm6]	T	C	2.221e^-4	0.699	INTRON CG34449
3R	13675572	3R_13675572_SNP [dm3] 3R_17849850_SNP [dm6]	T	A	2.223e^-4	0.699	INTRON tinc
X	4602724	X_4602724_SNP [dm3] X_4708691_SNP [dm6]	T	C	2.227e^-4	0.699	UPSTREAM Proc-R INTRON Proc-R
3R	14992632	3R_14992632_SNP [dm3] 3R_19166910_SNP [dm6]	G	A	2.232e^-4	0.699	INTRON sqz	TF binding site BDTNP1_TFBS_dl
2L	12156285	2L_12156285_SNP [dm3] 2L_12156285_SNP [dm6]	C	T	2.234e^-4	0.699	INTRON CG31760
3L	14834222	3L_14834222_SNP [dm3] 3L_14841122_SNP [dm6]	T	A	2.240e^-4	0.699	INTRON CG17839
2R	19550957	2R_19550957_SNP [dm3] 2R_23663434_SNP [dm6]	G	A	2.244e^-4	0.699	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11982389	3R_11982389_DEL [dm3] 3R_16156667_DEL [dm6]	GATGAATG	G	2.246e^-4	0.699	INTRON CG6006
3R	23286169	3R_23286169_SNP [dm3] 3R_27460447_SNP [dm6]	C	A	2.247e^-4	0.699	INTERGENIC
X	8840185	X_8840185_SNP [dm3] X_8946152_SNP [dm6]	C	T	2.248e^-4	0.699	INTRON rdgA
3R	7947056	3R_7947056_DEL [dm3] 3R_12121334_DEL [dm6]	AT	A	2.257e^-4	0.699	DOWNSTREAM CG4702 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	24950813	3R_24950813_SNP [dm3] 3R_29125091_SNP [dm6]	G	A	2.258e^-4	0.699	INTRON CG11880	TF binding site mE1_TFBS_cad
3R	5118297	3R_5118297_SNP [dm3] 3R_9292575_SNP [dm6]	T	G	2.265e^-4	0.699	INTERGENIC
3R	25012605	3R_25012605_SNP [dm3] 3R_29186883_SNP [dm6]	T	C	2.268e^-4	0.699	INTRON CG14509
X	15421596	X_15421596_SNP [dm3] X_15527563_SNP [dm6]	C	T	2.269e^-4	0.699	INTRON Ac13E
3R	6101438	3R_6101438_SNP [dm3] 3R_10275716_SNP [dm6]	C	T	2.276e^-4	0.699	INTRON CG43143
3R	12859409	3R_12859409_INS [dm3] 3R_17033687_INS [dm6]	C	CA	2.276e^-4	0.699	UTR_3_PRIME CG4009 DOWNSTREAM CG4009 & 1 other
3R	12704925	3R_12704925_SNP [dm3] 3R_16879203_SNP [dm6]	G	C	2.280e^-4	0.699	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	2316227	3L_2316227_SNP [dm3] 3L_2316227_SNP [dm6]	G	C	2.289e^-4	0.699	DOWNSTREAM CR45427 INTERGENIC
2L	14545794	2L_14545794_SNP [dm3] 2L_14545794_SNP [dm6]	T	C	2.292e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18341075	2L_18341075_SNP [dm3] 2L_18341075_SNP [dm6]	T	C	2.303e^-4	0.699	INTRON Fas3	TF binding site mE1_TFBS_chinmo
2R	14472351	2R_14472351_SNP [dm3] 2R_18584846_SNP [dm6]	C	T	2.304e^-4	0.699	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	5889591	3R_5889591_SNP [dm3] 3R_10063869_SNP [dm6]	A	T	2.306e^-4	0.699	UPSTREAM CG33631 DOWNSTREAM CG33630 INTERGENIC
3R	4016263	3R_4016263_SNP [dm3] 3R_8190541_SNP [dm6]	C	G	2.306e^-4	0.699	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	3625146	2L_3625146_SNP [dm3] 2L_3625146_SNP [dm6]	T	C	2.315e^-4	0.699	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
3L	6390382	3L_6390382_SNP [dm3] 3L_6397282_SNP [dm6]	T	A	2.316e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	11126916	2R_11126916_SNP [dm3] 2R_15239411_SNP [dm6]	T	A	2.325e^-4	0.699	INTRON Fs
2L	15328596	2L_15328596_INS [dm3] 2L_15328596_INS [dm6]	T	TT	2.331e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	20298160	2R_20298160_SNP [dm3] 2R_24410637_SNP [dm6]	T	C	2.333e^-4	0.699	UTR_5_PRIME SerT UPSTREAM SerT
3L	18801544	3L_18801544_SNP [dm3] 3L_18808444_SNP [dm6]	G	A	2.336e^-4	0.699	SYNONYMOUS_CODING CG14073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8652703	X_8652703_SNP [dm3] X_8758670_SNP [dm6]	A	T	2.343e^-4	0.699	INTRON Lim1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11331840	3L_11331840_SNP [dm3] 3L_11338740_SNP [dm6]	C	T	2.350e^-4	0.699	INTERGENIC
3R	26332175	3R_26332175_SNP [dm3] 3R_30506453_SNP [dm6]	T	C	2.359e^-4	0.699	SYNONYMOUS_CODING CG15539 UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other
2L	15011778	2L_15011778_SNP [dm3] 2L_15011778_SNP [dm6]	A	C	2.366e^-4	0.699	DOWNSTREAM CR43856 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13825327	3R_13825327_SNP [dm3] 3R_17999605_SNP [dm6]	T	A	2.370e^-4	0.699	INTRON cpo
2R	14986903	2R_14986903_SNP [dm3] 2R_19099398_SNP [dm6]	C	A	2.372e^-4	0.699	INTRON 5-HT1A
3R	24812383	3R_24812383_SNP [dm3] 3R_28986661_SNP [dm6]	C	G	2.373e^-4	0.699	INTERGENIC
2L	15011774	2L_15011774_INS [dm3] 2L_15011774_INS [dm6]	T	TTATTGGTAAAA...	2.375e^-4	0.699	DOWNSTREAM CR43856 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	3476640	2R_3476640_DEL [dm3] 2R_7589135_DEL [dm6]	CT	C	2.375e^-4	0.699	UPSTREAM scra INTRON CG1360	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11314928	3L_11314928_SNP [dm3] 3L_11321828_SNP [dm6]	G	T	2.377e^-4	0.699	UPSTREAM CG6168 INTERGENIC
3R	4507055	3R_4507055_SNP [dm3] 3R_8681333_SNP [dm6]	T	C	2.378e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	17148410	3L_17148410_SNP [dm3] 3L_17155310_SNP [dm6]	C	T	2.379e^-4	0.699	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	957138	2L_957138_SNP [dm3] 2L_957138_SNP [dm6]	T	C	2.381e^-4	0.699	SYNONYMOUS_CODING CG4341
3R	12738104	3R_12738104_SNP [dm3] 3R_16912382_SNP [dm6]	C	T	2.383e^-4	0.699	INTRON iab-8
2L	3222422	2L_3222422_SNP [dm3] 2L_3222422_SNP [dm6]	G	T	2.384e^-4	0.699	INTERGENIC
3R	13825324	3R_13825324_SNP [dm3] 3R_17999602_SNP [dm6]	G	T	2.384e^-4	0.699	INTRON cpo
3R	11727292	3R_11727292_DEL [dm3] 3R_15901570_DEL [dm6]	AA	A	2.385e^-4	0.699	UPSTREAM glob1 INTRON glob1
3R	20316961	3R_20316961_SNP [dm3] 3R_24491239_SNP [dm6]	C	G	2.392e^-4	0.699	DOWNSTREAM nAChRalpha2 INTERGENIC
3R	11838448	3R_11838448_INS [dm3] 3R_16012726_INS [dm6]	T	TGGGT	2.398e^-4	0.699	UTR_5_PRIME GATAe INTRON GATAe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_inv
3R	12706351	3R_12706351_SNP [dm3] 3R_16880629_SNP [dm6]	A	G	2.400e^-4	0.699	INTRON iab-8
3R	16479930	3R_16479930_SNP [dm3] 3R_20654208_SNP [dm6]	T	C	2.406e^-4	0.699	SYNONYMOUS_CODING Nep4	TF binding site mE1_TFBS_cad
3L	18775511	3L_18775511_DEL [dm3] 3L_18782411_DEL [dm6]	ATCAA	A	2.406e^-4	0.699	INTRON ftz-f1
3R	5758912	3R_5758912_SNP [dm3] 3R_9933190_SNP [dm6]	T	A	2.406e^-4	0.699	INTRON Glut4EF	TF binding site mE1_TFBS_HSA
2L	2195921	2L_2195921_SNP [dm3] 2L_2195921_SNP [dm6]	T	G	2.410e^-4	0.699	INTRON CG34172	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3L	11596231	3L_11596231_SNP [dm3] 3L_11603131_SNP [dm6]	A	G	2.411e^-4	0.699	NON_SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	3607123	3R_3607123_SNP [dm3] 3R_7781401_SNP [dm6]	T	A	2.419e^-4	0.699	INTRON CG18747	TF binding site mE1_TFBS_cad
2L	16098974	2L_16098974_DEL [dm3] 2L_16098974_DEL [dm6]	CCAGAGTAACTCATCAAAAC...	C	2.419e^-4	0.699	INTERGENIC
3L	18010196	3L_18010196_SNP [dm3] 3L_18017096_SNP [dm6]	A	C	2.425e^-4	0.699	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2L	4388947	2L_4388947_SNP [dm3] 2L_4388947_SNP [dm6]	G	A	2.427e^-4	0.699	INTRON Tps1
3L	19378294	3L_19378294_SNP [dm3] 3L_19385194_SNP [dm6]	A	G	2.428e^-4	0.699	INTRON CG32206
2L	1978179	2L_1978179_SNP [dm3] 2L_1978179_SNP [dm6]	T	C	2.430e^-4	0.699	NON_SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13815975	3R_13815975_SNP [dm3] 3R_17990253_SNP [dm6]	T	C	2.439e^-4	0.699	INTRON cpo	TF binding site mE1_TFBS_inv
X	5462575	X_5462575_SNP [dm3] X_5568542_SNP [dm6]	C	T	2.439e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	26332094	3R_26332094_SNP [dm3] 3R_30506372_SNP [dm6]	G	A	2.455e^-4	0.702	NON_SYNONYMOUS_CODING CG15539 SPLICE_SITE_REGION CG15539 UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other
X	19372594	X_19372594_SNP [dm3] X_19478561_SNP [dm6]	G	A	2.465e^-4	0.702	SYNONYMOUS_CODING CG32533 DOWNSTREAM mRpS14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14120941	3L_14120941_SNP [dm3] 3L_14127841_SNP [dm6]	A	T	2.468e^-4	0.702	INTRON Sox21b
3R	16479570	3R_16479570_SNP [dm3] 3R_20653848_SNP [dm6]	A	G	2.468e^-4	0.702	SYNONYMOUS_CODING Nep4	TF binding site mE1_TFBS_cad
2L	2540964	2L_2540964_SNP [dm3] 2L_2540964_SNP [dm6]	A	G	2.470e^-4	0.702	INTERGENIC
2L	2337358	2L_2337358_SNP [dm3] 2L_2337358_SNP [dm6]	G	C	2.478e^-4	0.702	INTRON CG9967 & 1 other
3R	15132536	3R_15132536_DEL [dm3] 3R_19306814_DEL [dm6]	TG	T	2.482e^-4	0.702	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	10457707	2L_10457707_SNP [dm3] 2L_10457707_SNP [dm6]	T	C	2.483e^-4	0.702	UTR_5_PRIME LM408 UPSTREAM CG5322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	1682219	X_1682219_DEL [dm3] X_1788186_DEL [dm6]	AAATAATGTCAGGA...	A	2.491e^-4	0.702	DOWNSTREAM mir-981 & 1 other INTRON CG42666
3L	11023490	3L_11023490_SNP [dm3] 3L_11030390_SNP [dm6]	C	A	2.493e^-4	0.702	DOWNSTREAM CG32081 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12722118	3L_12722118_SNP [dm3] 3L_12729018_SNP [dm6]	C	T	2.498e^-4	0.702	INTERGENIC
2R	11017614	2R_11017614_SNP [dm3] 2R_15130109_SNP [dm6]	A	C	2.500e^-4	0.702	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	9485498	2L_9485498_SNP [dm3] 2L_9485498_SNP [dm6]	G	A	2.503e^-4	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11676259	2L_11676259_SNP [dm3] 2L_11676259_SNP [dm6]	G	A	2.506e^-4	0.702	INTERGENIC
2L	11931180	2L_11931180_SNP [dm3] 2L_11931180_SNP [dm6]	A	G	2.510e^-4	0.702	INTERGENIC
3R	6975544	3R_6975544_SNP [dm3] 3R_11149822_SNP [dm6]	T	A	2.512e^-4	0.702	INTERGENIC
X	4773031	X_4773031_SNP [dm3] X_4878998_SNP [dm6]	C	T	2.512e^-4	0.702	INTRON CG42594
2R	2425778	2R_2425778_SNP [dm3] 2R_6538273_SNP [dm6]	T	C	2.517e^-4	0.702	INTRON jing
3L	15037562	3L_15037562_SNP [dm3] 3L_15044462_SNP [dm6]	T	C	2.518e^-4	0.702	UPSTREAM ind INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	9033543	3L_9033543_SNP [dm3] 3L_9040443_SNP [dm6]	G	A	2.524e^-4	0.702	UPSTREAM Doc1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5151674	3R_5151674_SNP [dm3] 3R_9325952_SNP [dm6]	C	A	2.528e^-4	0.703	INTRON CG8861
2L	6823217	2L_6823217_SNP [dm3] 2L_6823217_SNP [dm6]	T	C	2.537e^-4	0.704	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11006502	2R_11006502_SNP [dm3] 2R_15118997_SNP [dm6]	A	T	2.549e^-4	0.705	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11017013	3L_11017013_SNP [dm3] 3L_11023913_SNP [dm6]	C	A	2.550e^-4	0.705	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22486647	3R_22486647_SNP [dm3] 3R_26660925_SNP [dm6]	G	A	2.552e^-4	0.705	INTRON beat-VII
3R	12325879	3R_12325879_SNP [dm3] 3R_16500157_SNP [dm6]	C	T	2.556e^-4	0.705	INTRON decay
3L	11596105	3L_11596105_SNP [dm3] 3L_11603005_SNP [dm6]	A	C	2.563e^-4	0.706	NON_SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	18140632	3L_18140632_SNP [dm3] 3L_18147532_SNP [dm6]	T	C	2.568e^-4	0.706	INTERGENIC
3L	9248223	3L_9248223_SNP [dm3] 3L_9255123_SNP [dm6]	T	C	2.580e^-4	0.709	INTRON GluRIB
X	872598	X_872598_SNP [dm3] X_978565_SNP [dm6]	C	T	2.587e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24955128	3R_24955128_SNP [dm3] 3R_29129406_SNP [dm6]	G	A	2.588e^-4	0.709	SYNONYMOUS_CODING dgt6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6140792	2R_6140792_SNP [dm3] 2R_10253287_SNP [dm6]	G	A	2.597e^-4	0.709	NON_SYNONYMOUS_CODING CG12913 UPSTREAM Syb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12808542	3R_12808542_SNP [dm3] 3R_16982820_SNP [dm6]	C	T	2.598e^-4	0.709	UPSTREAM Ahcy89E DOWNSTREAM CG18622 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9608384	3R_9608384_SNP [dm3] 3R_13782662_SNP [dm6]	C	A	2.612e^-4	0.709	UTR_5_PRIME Dip-B UPSTREAM Dip-B DOWNSTREAM CG9286 INTRON Dip-B
3R	11838445	3R_11838445_SNP [dm3] 3R_16012723_SNP [dm6]	G	C	2.612e^-4	0.709	UTR_5_PRIME GATAe INTRON GATAe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_inv
3L	13926159	3L_13926159_SNP [dm3] 3L_13933059_SNP [dm6]	G	A	2.616e^-4	0.709	SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14834288	3L_14834288_SNP [dm3] 3L_14841188_SNP [dm6]	A	T	2.618e^-4	0.709	INTRON CG17839
2R	14696309	2R_14696309_SNP [dm3] 2R_18808804_SNP [dm6]	G	T	2.621e^-4	0.709	INTRON CG15096	TF binding site mE1_TFBS_chinmo
3R	26332169	3R_26332169_SNP [dm3] 3R_30506447_SNP [dm6]	G	C	2.623e^-4	0.709	SYNONYMOUS_CODING CG15539 UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other
3R	13397510	3R_13397510_SNP [dm3] 3R_17571788_SNP [dm6]	T	A	2.624e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	1482099	2L_1482099_SNP [dm3] 2L_1482099_SNP [dm6]	T	A	2.633e^-4	0.711	INTERGENIC
2L	3153118	2L_3153118_SNP [dm3] 2L_3153118_SNP [dm6]	C	A	2.641e^-4	0.711	UPSTREAM Mad INTRON Mad
3L	6625632	3L_6625632_SNP [dm3] 3L_6632532_SNP [dm6]	A	C	2.644e^-4	0.711	INTRON GluRIA
2L	15931198	2L_15931198_SNP [dm3] 2L_15931198_SNP [dm6]	G	T	2.644e^-4	0.711	INTRON beat-Ib
3R	7743253	3R_7743253_SNP [dm3] 3R_11917531_SNP [dm6]	A	C	2.660e^-4	0.714	INTRON Cad87A
2R	11127125	2R_11127125_SNP [dm3] 2R_15239620_SNP [dm6]	C	A	2.664e^-4	0.714	UTR_5_PRIME Fs INTRON Fs
3L	11575647	3L_11575647_SNP [dm3] 3L_11582547_SNP [dm6]	A	G	2.678e^-4	0.714	SYNONYMOUS_CODING CG32086 UPSTREAM CG33269
3L	16455103	3L_16455103_SNP [dm3] 3L_16462003_SNP [dm6]	A	G	2.680e^-4	0.714	INTRON CG33158	TF binding site mE1_TFBS_inv
2L	2337857	2L_2337857_SNP [dm3] 2L_2337857_SNP [dm6]	C	G	2.680e^-4	0.714	INTRON CG9967 & 1 other
3R	26721813	3R_26721813_SNP [dm3] 3R_30896091_SNP [dm6]	T	C	2.690e^-4	0.714	INTRON Cyp4c3
X	20589661	X_20589661_SNP [dm3] X_20718634_SNP [dm6]	C	A	2.692e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_inv
2L	5677013	2L_5677013_SNP [dm3] 2L_5677013_SNP [dm6]	T	A	2.697e^-4	0.714	INTERGENIC
3L	10655873	3L_10655873_SNP [dm3] 3L_10662773_SNP [dm6]	A	G	2.699e^-4	0.714	SYNONYMOUS_CODING CG8003 UPSTREAM CG32068	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13978849	2R_13978849_SNP [dm3] 2R_18091344_SNP [dm6]	A	G	2.702e^-4	0.714	INTRON CG34386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	13650428	3R_13650428_SNP [dm3] 3R_17824706_SNP [dm6]	C	G	2.707e^-4	0.714	INTRON tinc
2L	11521451	2L_11521451_SNP [dm3] 2L_11521451_SNP [dm6]	G	T	2.708e^-4	0.714	UPSTREAM CG14930 DOWNSTREAM CG43153 & 1 other INTERGENIC
2L	10620461	2L_10620461_SNP [dm3] 2L_10620461_SNP [dm6]	T	A	2.709e^-4	0.714	INTRON Trim9
3R	7989039	3R_7989039_SNP [dm3] 3R_12163317_SNP [dm6]	T	G	2.725e^-4	0.714	NON_SYNONYMOUS_CODING Cpn
2R	11015818	2R_11015818_SNP [dm3] 2R_15128313_SNP [dm6]	A	G	2.733e^-4	0.714	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	25802385	3R_25802385_SNP [dm3] 3R_29976663_SNP [dm6]	T	C	2.738e^-4	0.714	INTERGENIC
3R	24951490	3R_24951490_SNP [dm3] 3R_29125768_SNP [dm6]	G	A	2.738e^-4	0.714	INTRON CG11880	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15103795	2L_15103795_SNP [dm3] 2L_15103795_SNP [dm6]	C	T	2.740e^-4	0.714	INTERGENIC
3R	12095798	3R_12095798_SNP [dm3] 3R_16270076_SNP [dm6]	G	T	2.745e^-4	0.714	SYNONYMOUS_CODING Mat89Ba	TF binding site mE1_TFBS_sens
2R	13979756	2R_13979756_SNP [dm3] 2R_18092251_SNP [dm6]	T	C	2.746e^-4	0.714	INTRON CG34386
2R	13858111	2R_13858111_SNP [dm3] 2R_17970606_SNP [dm6]	G	T	2.746e^-4	0.714	INTERGENIC
3R	12859507	3R_12859507_SNP [dm3] 3R_17033785_SNP [dm6]	G	A	2.755e^-4	0.714	UTR_3_PRIME CG4009 DOWNSTREAM CG31268
2R	1873778	2R_1873778_SNP [dm3] 2R_5986273_SNP [dm6]	C	T	2.759e^-4	0.714	INTRON Src42A
3R	12632214	3R_12632214_SNP [dm3] 3R_16806492_SNP [dm6]	G	T	2.762e^-4	0.714	DOWNSTREAM abd-A INTERGENIC	TF binding site mE1_TFBS_cad
3R	11753852	3R_11753852_SNP [dm3] 3R_15928130_SNP [dm6]	C	T	2.765e^-4	0.714	DOWNSTREAM CG34276 INTRON CG4221
3L	6213601	3L_6213601_SNP [dm3] 3L_6220501_SNP [dm6]	C	T	2.765e^-4	0.714	UPSTREAM pncr008:3L INTERGENIC
3L	9033478	3L_9033478_SNP [dm3] 3L_9040378_SNP [dm6]	G	T	2.766e^-4	0.714	UPSTREAM Doc1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3L	5771019	3L_5771019_SNP [dm3] 3L_5777919_SNP [dm6]	G	A	2.770e^-4	0.714	UPSTREAM vito INTRON Myt1
3R	25395376	3R_25395376_SNP [dm3] 3R_29569654_SNP [dm6]	T	A	2.775e^-4	0.714	INTERGENIC
2L	16411622	2L_16411622_SNP [dm3] 2L_16411622_SNP [dm6]	C	T	2.783e^-4	0.714	INTRON CG5888	TF binding site BDTNP1_TFBS_dl
2L	3938415	2L_3938415_SNP [dm3] 2L_3938415_SNP [dm6]	T	C	2.789e^-4	0.714	INTRON fred
2L	2338755	2L_2338755_SNP [dm3] 2L_2338755_SNP [dm6]	T	C	2.796e^-4	0.714	INTRON CG9967 & 1 other
3R	9532170	3R_9532170_SNP [dm3] 3R_13706448_SNP [dm6]	C	T	2.797e^-4	0.714	UPSTREAM Adgf-C INTERGENIC
3L	1171767	3L_1171767_SNP [dm3] 3L_1171767_SNP [dm6]	C	T	2.798e^-4	0.714	INTRON bab2	regulatory region REDfly_CRMs
3R	26653896	3R_26653896_SNP [dm3] 3R_30828174_SNP [dm6]	T	A	2.801e^-4	0.714	UTR_5_PRIME CG15544
3R	22612610	3R_22612610_SNP [dm3] 3R_26786888_SNP [dm6]	C	A	2.805e^-4	0.714	INTERGENIC
2R	2912331	2R_2912331_INS [dm3] 2R_7024826_INS [dm6]	T	TT	2.814e^-4	0.714	UPSTREAM Tsp42Ef & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12163807	3L_12163807_SNP [dm3] 3L_12170707_SNP [dm6]	T	C	2.815e^-4	0.714	INTRON Rh7
3L	1740307	3L_1740307_SNP [dm3] 3L_1740307_SNP [dm6]	T	G	2.832e^-4	0.714	INTRON Gk
2R	15039709	2R_15039709_INS [dm3] 2R_19152204_INS [dm6]	A	AATT	2.835e^-4	0.714	INTRON ena
3R	20436932	3R_20436932_SNP [dm3] 3R_24611210_SNP [dm6]	A	C	2.837e^-4	0.714	INTRON mld
2L	1298720	2L_1298720_SNP [dm3] 2L_1298720_SNP [dm6]	T	C	2.838e^-4	0.714	INTERGENIC
3R	12325881	3R_12325881_SNP [dm3] 3R_16500159_SNP [dm6]	T	A	2.839e^-4	0.714	INTRON decay
3R	12093946	3R_12093946_DEL [dm3] 3R_16268224_DEL [dm6]	GCTCAAG	G	2.852e^-4	0.714	DOWNSTREAM Mat89Ba	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	12093954	3R_12093954_SNP [dm3] 3R_16268232_SNP [dm6]	C	A	2.852e^-4	0.714	SYNONYMOUS_CODING Mst89B DOWNSTREAM Mat89Ba	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	7276263	3L_7276263_DEL [dm3] 3L_7283163_DEL [dm6]	ACAAGGCGTAAAGTCA...	A	2.856e^-4	0.714	INTRON unc-13-4A
X	12785678	X_12785678_SNP [dm3] X_12891645_SNP [dm6]	C	G	2.861e^-4	0.714	INTRON Pde9
2L	1720843	2L_1720843_SNP [dm3] 2L_1720843_SNP [dm6]	C	T	2.867e^-4	0.714	INTRON Rim2
3L	12722102	3L_12722102_SNP [dm3] 3L_12729002_SNP [dm6]	C	T	2.874e^-4	0.714	INTERGENIC
2L	14480694	2L_14480694_SNP [dm3] 2L_14480694_SNP [dm6]	A	C	2.877e^-4	0.714	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7453771	2R_7453771_SNP [dm3] 2R_11566266_SNP [dm6]	G	T	2.882e^-4	0.714	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	26927054	3R_26927054_SNP [dm3] 3R_31101332_SNP [dm6]	G	T	2.889e^-4	0.714	UPSTREAM CG15553 INTERGENIC
3R	18964651	3R_18964651_SNP [dm3] 3R_23138929_SNP [dm6]	T	G	2.893e^-4	0.714	INTRON hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4681303	2R_4681303_SNP [dm3] 2R_8793798_SNP [dm6]	A	C	2.897e^-4	0.714	DOWNSTREAM CG8746 INTERGENIC	TF binding site mE1_TFBS_cad
2L	12296235	2L_12296235_SNP [dm3] 2L_12296235_SNP [dm6]	G	T	2.897e^-4	0.714	INTRON aret
X	10970251	X_10970251_SNP [dm3] X_11076218_SNP [dm6]	G	A	2.897e^-4	0.714	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
2L	15014646	2L_15014646_SNP [dm3] 2L_15014646_SNP [dm6]	A	G	2.899e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12240247	3L_12240247_SNP [dm3] 3L_12247147_SNP [dm6]	C	T	2.900e^-4	0.714	INTRON app
2L	12726574	2L_12726574_SNP [dm3] 2L_12726574_SNP [dm6]	T	C	2.901e^-4	0.714	SYNONYMOUS_CODING MRP	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	11126960	2R_11126960_DEL [dm3] 2R_15239455_DEL [dm6]	CT	C	2.904e^-4	0.714	INTRON Fs
3L	19009632	3L_19009632_SNP [dm3] 3L_19016532_SNP [dm6]	A	C	2.904e^-4	0.714	INTRON nkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12632187	3R_12632187_SNP [dm3] 3R_16806465_SNP [dm6]	C	T	2.910e^-4	0.714	DOWNSTREAM abd-A INTERGENIC	TF binding site mE1_TFBS_cad
2R	14457981	2R_14457981_SNP [dm3] 2R_18570476_SNP [dm6]	A	T	2.917e^-4	0.714	INTRON GEFmeso
2R	3950111	2R_3950111_SNP [dm3] 2R_8062606_SNP [dm6]	T	C	2.923e^-4	0.714	INTRON CG12769	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26653910	3R_26653910_SNP [dm3] 3R_30828188_SNP [dm6]	A	G	2.929e^-4	0.714	UTR_5_PRIME CG15544
3R	12642471	3R_12642471_SNP [dm3] 3R_16816749_SNP [dm6]	C	G	2.930e^-4	0.714	INTRON abd-A	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12959304	2L_12959304_SNP [dm3] 2L_12959304_SNP [dm6]	G	T	2.933e^-4	0.714	INTERGENIC
3R	12831787	3R_12831787_SNP [dm3] 3R_17006065_SNP [dm6]	A	G	2.939e^-4	0.714	INTRON Irc
2L	6033916	2L_6033916_SNP [dm3] 2L_6033916_SNP [dm6]	C	T	2.942e^-4	0.714	DOWNSTREAM mtm INTRON CG9109	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8343274	2L_8343274_DEL [dm3] 2L_8343274_DEL [dm6]	AC	A	2.950e^-4	0.714	DOWNSTREAM CR45371 INTRON CG14273
2L	1141955	2L_1141955_SNP [dm3] 2L_1141955_SNP [dm6]	A	G	2.952e^-4	0.714	UPSTREAM CR45717 DOWNSTREAM CG4577 INTERGENIC
3R	20443121	3R_20443121_SNP [dm3] 3R_24617399_SNP [dm6]	A	T	2.953e^-4	0.714	NON_SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16172275	2L_16172275_SNP [dm3] 2L_16172275_SNP [dm6]	A	G	2.953e^-4	0.714	SYNONYMOUS_CODING Ca-alpha1D UTR_5_PRIME Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12094612	3R_12094612_SNP [dm3] 3R_16268890_SNP [dm6]	A	G	2.957e^-4	0.714	DOWNSTREAM Mst89B INTRON Mat89Ba	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	17774433	3L_17774433_SNP [dm3] 3L_17781333_SNP [dm6]	C	A	2.961e^-4	0.714	INTERGENIC
3L	11314956	3L_11314956_SNP [dm3] 3L_11321856_SNP [dm6]	A	G	2.962e^-4	0.714	UPSTREAM CG6168 INTERGENIC
X	20589689	X_20589689_SNP [dm3] X_20718662_SNP [dm6]	T	C	2.968e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	4256343	3R_4256343_SNP [dm3] 3R_8430621_SNP [dm6]	G	A	2.977e^-4	0.714	INTRON CG45263
3R	25005119	3R_25005119_SNP [dm3] 3R_29179397_SNP [dm6]	T	C	2.986e^-4	0.714	INTRON CG14509	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7365766	3R_7365766_SNP [dm3] 3R_11540044_SNP [dm6]	A	G	2.987e^-4	0.714	UTR_5_PRIME dpr4
X	13126703	X_13126703_SNP [dm3] X_13232670_SNP [dm6]	T	G	2.998e^-4	0.714	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3620609	2L_3620609_SNP [dm3] 2L_3620609_SNP [dm6]	A	T	3.001e^-4	0.714	SYNONYMOUS_CODING Dot DOWNSTREAM CG15418
2R	13979557	2R_13979557_SNP [dm3] 2R_18092052_SNP [dm6]	A	T	3.013e^-4	0.714	INTRON CG34386
3R	12836742	3R_12836742_SNP [dm3] 3R_17011020_SNP [dm6]	G	A	3.014e^-4	0.714	INTRON CG8907
3L	12163798	3L_12163798_SNP [dm3] 3L_12170698_SNP [dm6]	A	G	3.022e^-4	0.714	INTRON Rh7
3L	6999657	3L_6999657_SNP [dm3] 3L_7006557_SNP [dm6]	A	G	3.028e^-4	0.714	INTRON Mp
2R	19550959	2R_19550959_SNP [dm3] 2R_23663436_SNP [dm6]	G	A	3.030e^-4	0.714	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3893897	X_3893897_SNP [dm3] X_3999864_SNP [dm6]	A	T	3.032e^-4	0.714	INTERGENIC
X	9797913	X_9797913_SNP [dm3] X_9903880_SNP [dm6]	C	A	3.036e^-4	0.714	INTERGENIC
3R	25287490	3R_25287490_SNP [dm3] 3R_29461768_SNP [dm6]	T	C	3.042e^-4	0.714	UPSTREAM Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	14604326	3R_14604326_MNP [dm3] 3R_18778604_MNP [dm6]	AAA	TTG	3.048e^-4	0.714	INTRON CG7720
3R	9893978	3R_9893978_SNP [dm3] 3R_14068256_SNP [dm6]	G	A	3.050e^-4	0.714	INTRON foxo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7423409	2R_7423409_SNP [dm3] 2R_11535904_SNP [dm6]	A	G	3.051e^-4	0.714	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14480693	2L_14480693_SNP [dm3] 2L_14480693_SNP [dm6]	A	G	3.053e^-4	0.714	INTERGENIC	TF binding site mE1_TFBS_cad
X	4733085	X_4733085_SNP [dm3] X_4839052_SNP [dm6]	T	C	3.057e^-4	0.714	INTERGENIC
2R	7438767	2R_7438767_SNP [dm3] 2R_11551262_SNP [dm6]	G	A	3.070e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10095917	2L_10095917_SNP [dm3] 2L_10095917_SNP [dm6]	G	C	3.071e^-4	0.714	INTRON CG44153 & 1 other
3R	14465995	3R_14465995_SNP [dm3] 3R_18640273_SNP [dm6]	T	C	3.082e^-4	0.714	INTRON qin & 1 other
3R	13815915	3R_13815915_SNP [dm3] 3R_17990193_SNP [dm6]	T	A	3.083e^-4	0.714	INTRON cpo	TF binding site mE1_TFBS_inv
3R	11753858	3R_11753858_SNP [dm3] 3R_15928136_SNP [dm6]	A	G	3.085e^-4	0.714	DOWNSTREAM CG34276 INTRON CG4221
3L	11025067	3L_11025067_INS [dm3] 3L_11031967_INS [dm6]	T	TACAT	3.086e^-4	0.714	INTERGENIC
2L	20406094	2L_20406094_SNP [dm3] 2L_20406094_SNP [dm6]	C	T	3.087e^-4	0.714	INTRON CG10947
3L	1658127	3L_1658127_SNP [dm3] 3L_1658127_SNP [dm6]	G	A	3.089e^-4	0.714	NON_SYNONYMOUS_CODING CG7971
3R	5173999	3R_5173999_SNP [dm3] 3R_9348277_SNP [dm6]	A	G	3.092e^-4	0.714	INTRON CG45050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14481277	2L_14481277_SNP [dm3] 2L_14481277_SNP [dm6]	C	T	3.098e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	12682524	2L_12682524_INS [dm3] 2L_12682524_INS [dm6]	T	TGG	3.099e^-4	0.714	INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	25581595	3R_25581595_SNP [dm3] 3R_29755873_SNP [dm6]	T	C	3.101e^-4	0.714	EXON CR44953
2R	7368113	2R_7368113_SNP [dm3] 2R_11480608_SNP [dm6]	C	G	3.107e^-4	0.714	INTRON inv
3R	26861784	3R_26861784_SNP [dm3] 3R_31036062_SNP [dm6]	C	G	3.107e^-4	0.714	NON_SYNONYMOUS_CODING CG33773
3L	13265427	3L_13265427_SNP [dm3] 3L_13272327_SNP [dm6]	A	G	3.113e^-4	0.714	INTRON caps
3L	10935870	3L_10935870_SNP [dm3] 3L_10942770_SNP [dm6]	T	A	3.113e^-4	0.714	INTERGENIC
3R	22612642	3R_22612642_SNP [dm3] 3R_26786920_SNP [dm6]	C	T	3.121e^-4	0.714	INTERGENIC
3R	7033291	3R_7033291_SNP [dm3] 3R_11207569_SNP [dm6]	C	T	3.125e^-4	0.714	SYNONYMOUS_CODING cu
3L	14603648	3L_14603648_SNP [dm3] 3L_14610548_SNP [dm6]	A	G	3.126e^-4	0.714	INTERGENIC
3R	13587359	3R_13587359_SNP [dm3] 3R_17761637_SNP [dm6]	A	T	3.127e^-4	0.714	INTRON TyrR
3R	12886218	3R_12886218_SNP [dm3] 3R_17060496_SNP [dm6]	G	T	3.130e^-4	0.714	INTRON Dad	TF binding site BDTNP1_TFBS_dl
2R	15149835	2R_15149835_SNP [dm3] 2R_19262330_SNP [dm6]	T	G	3.138e^-4	0.714	DOWNSTREAM CG7229 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13205264	3R_13205264_SNP [dm3] 3R_17379542_SNP [dm6]	C	G	3.144e^-4	0.714	UPSTREAM lute INTRON Brf
3R	2580794	3R_2580794_DEL [dm3] 3R_6755072_DEL [dm6]	AA	A	3.151e^-4	0.714	UPSTREAM zen DOWNSTREAM bcd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19465020	2R_19465020_INS [dm3] 2R_23577497_INS [dm6]	C	CCA	3.154e^-4	0.714	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	19465024	2R_19465024_MNP [dm3] 2R_23577501_MNP [dm6]	GTCT	TAGA	3.154e^-4	0.714	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	19465029	2R_19465029_SNP [dm3] 2R_23577506_SNP [dm6]	C	A	3.154e^-4	0.714	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	19465032	2R_19465032_SNP [dm3] 2R_23577509_SNP [dm6]	A	G	3.154e^-4	0.714	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	11300894	3R_11300894_SNP [dm3] 3R_15475172_SNP [dm6]	G	A	3.160e^-4	0.714	SYNONYMOUS_CODING AdamTS-A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	1662468	3L_1662468_SNP [dm3] 3L_1662468_SNP [dm6]	T	C	3.161e^-4	0.714	INTRON CG7971
3R	23672855	3R_23672855_SNP [dm3] 3R_27847133_SNP [dm6]	C	G	3.164e^-4	0.714	SPLICE_SITE_REGION Or98a INTRON CG34353 & 1 other
2R	9394674	2R_9394674_SNP [dm3] 2R_13507169_SNP [dm6]	G	A	3.169e^-4	0.714	UPSTREAM EfTuM INTRON mip120	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14144935	3R_14144935_SNP [dm3] 3R_18319213_SNP [dm6]	A	G	3.174e^-4	0.714	INTRON CG31235
2L	3325463	2L_3325463_SNP [dm3] 2L_3325463_SNP [dm6]	C	A	3.181e^-4	0.714	SYNONYMOUS_CODING CG33281
3R	7946931	3R_7946931_SNP [dm3] 3R_12121209_SNP [dm6]	A	G	3.181e^-4	0.714	DOWNSTREAM CG4702 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	15092946	2R_15092946_SNP [dm3] 2R_19205441_SNP [dm6]	A	C	3.181e^-4	0.714	INTRON hppy
3R	24884870	3R_24884870_SNP [dm3] 3R_29059148_SNP [dm6]	C	A	3.192e^-4	0.714	UTR_3_PRIME Sirt7 DOWNSTREAM Cul5
2L	15940976	2L_15940976_SNP [dm3] 2L_15940976_SNP [dm6]	G	A	3.205e^-4	0.714	UPSTREAM CG12448 INTRON beat-Ib
2R	11006400	2R_11006400_SNP [dm3] 2R_15118895_SNP [dm6]	A	G	3.211e^-4	0.714	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6273763	2R_6273763_SNP [dm3] 2R_10386258_SNP [dm6]	T	A	3.217e^-4	0.714	INTRON CG42732
2R	18925118	2R_18925118_SNP [dm3] 2R_23037595_SNP [dm6]	T	G	3.217e^-4	0.714	INTRON twi & 1 other
3L	4731046	3L_4731046_SNP [dm3] 3L_4731046_SNP [dm6]	G	C	3.221e^-4	0.714	INTRON RhoGEF64C
3L	14120971	3L_14120971_SNP [dm3] 3L_14127871_SNP [dm6]	G	T	3.225e^-4	0.714	INTRON Sox21b
2R	20100179	2R_20100179_SNP [dm3] 2R_24212656_SNP [dm6]	G	A	3.226e^-4	0.714	UTR_3_PRIME CG30419	TF binding site BDTNP1_TFBS_da
3R	21498721	3R_21498721_SNP [dm3] 3R_25672999_SNP [dm6]	A	G	3.228e^-4	0.714	INTRON Lgr3
3L	9853898	3L_9853898_SNP [dm3] 3L_9860798_SNP [dm6]	G	A	3.248e^-4	0.714	SYNONYMOUS_CODING iPLA2-VIA UPSTREAM CG10809
2L	11371842	2L_11371842_INS [dm3] 2L_11371842_INS [dm6]	A	ACAATA	3.253e^-4	0.714	INTRON salr	TF binding site mE1_TFBS_chinmo
3R	7942769	3R_7942769_SNP [dm3] 3R_12117047_SNP [dm6]	C	A	3.255e^-4	0.714	INTERGENIC
3R	7286950	3R_7286950_SNP [dm3] 3R_11461228_SNP [dm6]	A	T	3.258e^-4	0.714	UPSTREAM PGRP-LB INTRON CG17230
X	4558172	X_4558172_SNP [dm3] X_4664139_SNP [dm6]	T	A	3.259e^-4	0.714	INTRON CG3009
3R	26859590	3R_26859590_INS [dm3] 3R_31033868_INS [dm6]	G	GCCAG	3.259e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17827778	3R_17827778_SNP [dm3] 3R_22002056_SNP [dm6]	C	T	3.262e^-4	0.714	INTRON Eip93F	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5147764	3R_5147764_SNP [dm3] 3R_9322042_SNP [dm6]	A	T	3.263e^-4	0.714	NON_SYNONYMOUS_CODING HP1e INTRON CG8861	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14389108	3R_14389108_SNP [dm3] 3R_18563386_SNP [dm6]	A	C	3.264e^-4	0.714	DOWNSTREAM CG43210 & 1 other INTERGENIC
2L	18323558	2L_18323558_SNP [dm3] 2L_18323558_SNP [dm6]	G	C	3.269e^-4	0.714	INTRON Fas3
2L	16646852	2L_16646852_SNP [dm3] 2L_16646852_SNP [dm6]	A	T	3.275e^-4	0.714	INTRON CG42389
2L	16185120	2L_16185120_SNP [dm3] 2L_16185120_SNP [dm6]	T	A	3.275e^-4	0.714	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11401332	2L_11401332_SNP [dm3] 2L_11401332_SNP [dm6]	C	T	3.276e^-4	0.714	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4711712	X_4711712_SNP [dm3] X_4817679_SNP [dm6]	A	G	3.279e^-4	0.714	INTERGENIC
3R	2502742	3R_2502742_SNP [dm3] 3R_6677020_SNP [dm6]	T	C	3.281e^-4	0.714	INTRON lab	TF binding site mE1_TFBS_cad
X	11329935	X_11329935_SNP [dm3] X_11435902_SNP [dm6]	A	G	3.286e^-4	0.714	SYNONYMOUS_CODING Evi5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23673206	3R_23673206_SNP [dm3] 3R_27847484_SNP [dm6]	C	T	3.295e^-4	0.714	DOWNSTREAM Or98a INTRON CG34353
3L	12486331	3L_12486331_SNP [dm3] 3L_12493231_SNP [dm6]	C	T	3.299e^-4	0.714	SYNONYMOUS_CODING CG10657 EXON CR45682	TF binding site mE1_TFBS_cad
2L	20523375	2L_20523375_SNP [dm3] 2L_20523375_SNP [dm6]	G	C	3.304e^-4	0.714	INTERGENIC
2L	14478426	2L_14478426_SNP [dm3] 2L_14478426_SNP [dm6]	T	A	3.304e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3241434	2L_3241434_SNP [dm3] 2L_3241434_SNP [dm6]	T	C	3.305e^-4	0.714	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	2912187	2R_2912187_SNP [dm3] 2R_7024682_SNP [dm6]	G	A	3.305e^-4	0.714	UPSTREAM Tsp42Ef & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14119190	3R_14119190_SNP [dm3] 3R_18293468_SNP [dm6]	A	T	3.307e^-4	0.714	UPSTREAM l_3_05822 INTRON l_3_05822
3R	10777950	3R_10777950_SNP [dm3] 3R_14952228_SNP [dm6]	T	C	3.310e^-4	0.714	INTERGENIC
3R	10777957	3R_10777957_SNP [dm3] 3R_14952235_SNP [dm6]	G	T	3.310e^-4	0.714	INTERGENIC
2L	4403267	2L_4403267_SNP [dm3] 2L_4403267_SNP [dm6]	T	C	3.314e^-4	0.714	UTR_5_PRIME Dim1 DOWNSTREAM CG15431 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	2516653	2L_2516653_SNP [dm3] 2L_2516653_SNP [dm6]	T	G	3.322e^-4	0.714	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11643116	2L_11643116_SNP [dm3] 2L_11643116_SNP [dm6]	C	T	3.325e^-4	0.714	INTERGENIC
3L	11908950	3L_11908950_SNP [dm3] 3L_11915850_SNP [dm6]	A	G	3.328e^-4	0.714	INTRON CG44837
X	5079043	X_5079043_SNP [dm3] X_5185010_SNP [dm6]	G	A	3.328e^-4	0.714	INTRON rg & 1 other
3R	6627087	3R_6627087_SNP [dm3] 3R_10801365_SNP [dm6]	G	C	3.329e^-4	0.714	SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	11398657	2L_11398657_SNP [dm3] 2L_11398657_SNP [dm6]	A	C	3.347e^-4	0.714	INTERGENIC	regulatory region REDfly_CRMs
3R	6192014	3R_6192014_SNP [dm3] 3R_10366292_SNP [dm6]	T	G	3.347e^-4	0.714	INTRON Rfx
3L	18113039	3L_18113039_SNP [dm3] 3L_18119939_SNP [dm6]	C	A	3.351e^-4	0.714	SYNONYMOUS_CODING CG7341 DOWNSTREAM CG32195 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3624891	2L_3624891_SNP [dm3] 2L_3624891_SNP [dm6]	A	T	3.371e^-4	0.714	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
3L	10515141	3L_10515141_SNP [dm3] 3L_10522041_SNP [dm6]	A	G	3.377e^-4	0.714	INTRON A2bp1	TF binding site BDTNP1_TFBS_prd
2R	19465013	2R_19465013_SNP [dm3] 2R_23577490_SNP [dm6]	A	G	3.379e^-4	0.714	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	14483959	2L_14483959_SNP [dm3] 2L_14483959_SNP [dm6]	A	T	3.380e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19465030	2R_19465030_SNP [dm3] 2R_23577507_SNP [dm6]	A	G	3.383e^-4	0.714	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	18244325	3L_18244325_SNP [dm3] 3L_18251225_SNP [dm6]	T	C	3.383e^-4	0.714	UPSTREAM CheA75a INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18246804	3R_18246804_SNP [dm3] 3R_22421082_SNP [dm6]	T	C	3.384e^-4	0.714	UPSTREAM mats & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12455737	2R_12455737_SNP [dm3] 2R_16568232_SNP [dm6]	G	A	3.387e^-4	0.714	INTRON CG4945	TF binding site mE1_TFBS_cad
3L	6213452	3L_6213452_SNP [dm3] 3L_6220352_SNP [dm6]	A	G	3.388e^-4	0.714	UPSTREAM pncr008:3L INTERGENIC
3R	14465583	3R_14465583_SNP [dm3] 3R_18639861_SNP [dm6]	C	G	3.393e^-4	0.714	INTRON qin & 1 other
X	3893898	X_3893898_SNP [dm3] X_3999865_SNP [dm6]	G	A	3.393e^-4	0.714	INTERGENIC
3L	9034274	3L_9034274_INS [dm3] 3L_9041174_INS [dm6]	T	TCT	3.394e^-4	0.714	UPSTREAM Doc1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6809733	3L_6809733_SNP [dm3] 3L_6816633_SNP [dm6]	A	G	3.398e^-4	0.714	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1482051	2L_1482051_SNP [dm3] 2L_1482051_SNP [dm6]	G	A	3.399e^-4	0.714	INTERGENIC
2R	19464996	2R_19464996_INS [dm3] 2R_23577473_INS [dm6]	T	TC	3.400e^-4	0.714	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	15155147	2R_15155147_SNP [dm3] 2R_19267642_SNP [dm6]	C	T	3.402e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	20549179	2L_20549179_DEL [dm3] 2L_20549179_DEL [dm6]	TTGGCTTCTTATGTTTACG...	T	3.405e^-4	0.714	INTERGENIC
2L	20549202	2L_20549202_DEL [dm3] 2L_20549202_DEL [dm6]	ACCAACATCAGC...	T	3.405e^-4	0.714	INTERGENIC
X	19544710	X_19544710_SNP [dm3] X_19650677_SNP [dm6]	G	A	3.405e^-4	0.714	SYNONYMOUS_CODING Ranbp21	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	4731042	3L_4731042_SNP [dm3] 3L_4731042_SNP [dm6]	T	C	3.405e^-4	0.714	INTRON RhoGEF64C
X	2177448	X_2177448_SNP [dm3] X_2283415_SNP [dm6]	T	G	3.408e^-4	0.714	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
2R	2623349	2R_2623349_SNP [dm3] 2R_6735844_SNP [dm6]	C	T	3.413e^-4	0.714	INTRON l_2_01289
3R	23673079	3R_23673079_SNP [dm3] 3R_27847357_SNP [dm6]	G	A	3.417e^-4	0.714	DOWNSTREAM Or98a INTRON CG34353
3L	7932503	3L_7932503_SNP [dm3] 3L_7939403_SNP [dm6]	T	G	3.422e^-4	0.714	INTERGENIC	TF binding site mE1_TFBS_cad
3R	20023233	3R_20023233_SNP [dm3] 3R_24197511_SNP [dm6]	T	A	3.430e^-4	0.714	UTR_3_PRIME twin DOWNSTREAM twin & 1 other
X	12904112	X_12904112_SNP [dm3] X_13010079_SNP [dm6]	C	A	3.435e^-4	0.714	INTRON rad
2L	3524010	2L_3524010_SNP [dm3] 2L_3524010_SNP [dm6]	G	A	3.438e^-4	0.714	UTR_5_PRIME Sr-CIV
3R	3585929	3R_3585929_SNP [dm3] 3R_7760207_SNP [dm6]	C	A	3.441e^-4	0.714	UPSTREAM Sp7 DOWNSTREAM CG10919 INTRON Sp7
3R	26330128	3R_26330128_SNP [dm3] 3R_30504406_SNP [dm6]	A	G	3.456e^-4	0.714	SYNONYMOUS_CODING PH4alphaSG1 UPSTREAM CG31371
2R	4654787	2R_4654787_SNP [dm3] 2R_8767282_SNP [dm6]	G	T	3.463e^-4	0.714	INTERGENIC
2L	20524909	2L_20524909_SNP [dm3] 2L_20524909_SNP [dm6]	C	T	3.463e^-4	0.714	INTERGENIC
X	18424609	X_18424609_SNP [dm3] X_18530576_SNP [dm6]	A	C	3.463e^-4	0.714	DOWNSTREAM CG15047 INTRON Bx	TF binding site BDTNP1_TFBS_prd
X	7897466	X_7897466_SNP [dm3] X_8003433_SNP [dm6]	T	C	3.465e^-4	0.714	INTRON Tbh
3L	1359753	3L_1359753_SNP [dm3] 3L_1359753_SNP [dm6]	C	T	3.469e^-4	0.714	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14202283	3R_14202283_SNP [dm3] 3R_18376561_SNP [dm6]	C	T	3.471e^-4	0.714	DOWNSTREAM CR44946 INTERGENIC
3R	23299801	3R_23299801_SNP [dm3] 3R_27474079_SNP [dm6]	C	T	3.477e^-4	0.714	INTERGENIC
3L	8351864	3L_8351864_SNP [dm3] 3L_8358764_SNP [dm6]	G	C	3.479e^-4	0.714	UTR_5_PRIME Idh UPSTREAM Idh INTRON Idh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25499920	3R_25499920_SNP [dm3] 3R_29674198_SNP [dm6]	T	C	3.481e^-4	0.714	NON_SYNONYMOUS_CODING ppk19 UTR_3_PRIME Bub3
3R	21140375	3R_21140375_SNP [dm3] 3R_25314653_SNP [dm6]	T	C	3.482e^-4	0.714	UTR_3_PRIME CG10559 UPSTREAM CG31087
2R	7423379	2R_7423379_SNP [dm3] 2R_11535874_SNP [dm6]	C	A	3.484e^-4	0.714	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	787746	2L_787746_SNP [dm3] 2L_787746_SNP [dm6]	C	T	3.484e^-4	0.714	SYNONYMOUS_CODING Pkg21D UTR_3_PRIME CG3544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13965703	2R_13965703_SNP [dm3] 2R_18078198_SNP [dm6]	A	G	3.487e^-4	0.714	INTRON CG34386
2R	20301773	2R_20301773_SNP [dm3] 2R_24414250_SNP [dm6]	C	T	3.489e^-4	0.714	UTR_5_PRIME CG45069 UTR_3_PRIME CG45068 UPSTREAM CG45069
3R	9970616	3R_9970616_DEL [dm3] 3R_14144894_DEL [dm6]	CT	A	3.490e^-4	0.714	INTERGENIC
2L	14405699	2L_14405699_SNP [dm3] 2L_14405699_SNP [dm6]	G	A	3.492e^-4	0.714	INTRON elB	TF binding site mE1_TFBS_cad
2L	6035579	2L_6035579_SNP [dm3] 2L_6035579_SNP [dm6]	G	A	3.506e^-4	0.714	SYNONYMOUS_CODING mtm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	11945356	3R_11945356_SNP [dm3] 3R_16119634_SNP [dm6]	A	T	3.510e^-4	0.714	INTRON Sb
3R	11952988	3R_11952988_INS [dm3] 3R_16127266_INS [dm6]	T	TCATTCTTAAGAACAACTTT...	3.513e^-4	0.714	INTRON Sb
X	20209849	X_20209849_SNP [dm3] X_20338822_SNP [dm6]	G	C	3.516e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	12037591	3R_12037591_SNP [dm3] 3R_16211869_SNP [dm6]	C	T	3.517e^-4	0.714	INTERGENIC
3R	14604314	3R_14604314_SNP [dm3] 3R_18778592_SNP [dm6]	G	T	3.520e^-4	0.714	INTRON CG7720
3R	25337499	3R_25337499_SNP [dm3] 3R_29511777_SNP [dm6]	G	C	3.531e^-4	0.714	INTERGENIC	TF binding site mE1_TFBS_sens
3R	6976874	3R_6976874_SNP [dm3] 3R_11151152_SNP [dm6]	C	T	3.540e^-4	0.714	UTR_3_PRIME Ugt86Di DOWNSTREAM Ugt86Di
3L	9033358	3L_9033358_SNP [dm3] 3L_9040258_SNP [dm6]	T	C	3.541e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	9033359	3L_9033359_SNP [dm3] 3L_9040259_SNP [dm6]	T	C	3.541e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	18711523	2L_18711523_SNP [dm3] 2L_18711523_SNP [dm6]	C	T	3.543e^-4	0.714	SYNONYMOUS_CODING Irk3 DOWNSTREAM Grip71
3R	21319309	3R_21319309_SNP [dm3] 3R_25493587_SNP [dm6]	G	A	3.544e^-4	0.714	UTR_3_PRIME CG33494 UPSTREAM CR44179 DOWNSTREAM CG5112
3R	16996633	3R_16996633_SNP [dm3] 3R_21170911_SNP [dm6]	T	G	3.546e^-4	0.714	INTRON SNF4Agamma
X	7326680	X_7326680_SNP [dm3] X_7432647_SNP [dm6]	G	A	3.549e^-4	0.714	INTERGENIC
3R	4982534	3R_4982534_DEL [dm3] 3R_9156812_DEL [dm6]	TCCGTATTTAT...	T	3.552e^-4	0.714	INTRON pum
3R	22489253	3R_22489253_SNP [dm3] 3R_26663531_SNP [dm6]	G	A	3.554e^-4	0.714	INTRON beat-VII
3L	7120516	3L_7120516_SNP [dm3] 3L_7127416_SNP [dm6]	C	T	3.568e^-4	0.714	DOWNSTREAM CG8629 INTRON BBS1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13397506	3R_13397506_DEL [dm3] 3R_17571784_DEL [dm6]	AA	A	3.575e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	1405926	2L_1405926_SNP [dm3] 2L_1405926_SNP [dm6]	A	G	3.576e^-4	0.714	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	12241569	3L_12241569_SNP [dm3] 3L_12248469_SNP [dm6]	T	A	3.577e^-4	0.714	INTRON app
X	20018556	X_20018556_SNP [dm3] X_20124523_SNP [dm6]	G	A	3.588e^-4	0.714	INTRON CG34331
2L	10712833	2L_10712833_SNP [dm3] 2L_10712833_SNP [dm6]	C	T	3.593e^-4	0.714	INTERGENIC
3R	23285677	3R_23285677_SNP [dm3] 3R_27459955_SNP [dm6]	A	C	3.608e^-4	0.714	INTERGENIC
2R	8967602	2R_8967602_SNP [dm3] 2R_13080097_SNP [dm6]	A	T	3.609e^-4	0.714	UPSTREAM Drl-2 INTERGENIC
2L	12414796	2L_12414796_SNP [dm3] 2L_12414796_SNP [dm6]	C	A	3.613e^-4	0.714	INTRON vir-1
3R	14603596	3R_14603596_SNP [dm3] 3R_18777874_SNP [dm6]	G	C	3.614e^-4	0.714	INTRON CG7720
2L	18397682	2L_18397682_DEL [dm3] 2L_18397682_DEL [dm6]	AACTCAGCAGAAGACGAGC...	A	3.615e^-4	0.714	INTERGENIC
2L	6807973	2L_6807973_SNP [dm3] 2L_6807973_SNP [dm6]	T	A	3.621e^-4	0.714	INTERGENIC
3R	25890492	3R_25890492_SNP [dm3] 3R_30064770_SNP [dm6]	A	G	3.624e^-4	0.714	INTRON sima	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	792042	2L_792042_SNP [dm3] 2L_792042_SNP [dm6]	T	C	3.631e^-4	0.714	INTERGENIC
3R	12135500	3R_12135500_SNP [dm3] 3R_16309778_SNP [dm6]	A	G	3.631e^-4	0.714	DOWNSTREAM Sulf1 INTERGENIC
2R	19465004	2R_19465004_INS [dm3] 2R_23577481_INS [dm6]	A	ACTA	3.631e^-4	0.714	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	9501011	3R_9501011_DEL [dm3] 3R_13675289_DEL [dm6]	CCTTGGGTCAC...	C	3.634e^-4	0.714	UTR_3_PRIME CG9588 UPSTREAM Task6	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	14342620	2R_14342620_SNP [dm3] 2R_18455115_SNP [dm6]	G	C	3.645e^-4	0.714	UPSTREAM CG17669 INTERGENIC
2L	14523944	2L_14523944_SNP [dm3] 2L_14523944_SNP [dm6]	T	A	3.647e^-4	0.714	UPSTREAM CG33648 INTERGENIC
3R	19609197	3R_19609197_SNP [dm3] 3R_23783475_SNP [dm6]	G	C	3.649e^-4	0.714	INTRON mbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13354118	3R_13354118_SNP [dm3] 3R_17528396_SNP [dm6]	A	G	3.651e^-4	0.714	INTERGENIC
3L	1974512	3L_1974512_SNP [dm3] 3L_1974512_SNP [dm6]	G	A	3.659e^-4	0.714	DOWNSTREAM CG1139 INTERGENIC
2L	435921	2L_435921_SNP [dm3] 2L_435921_SNP [dm6]	G	A	3.670e^-4	0.714	INTRON ex	TF binding site mE1_TFBS_chinmo
2R	7377820	2R_7377820_SNP [dm3] 2R_11490315_SNP [dm6]	G	A	3.670e^-4	0.714	INTRON inv
2L	10345183	2L_10345183_SNP [dm3] 2L_10345183_SNP [dm6]	G	A	3.672e^-4	0.714	DOWNSTREAM Sps2 INTRON CG5022	TF binding site mE1_TFBS_HSA
3R	13201543	3R_13201543_SNP [dm3] 3R_17375821_SNP [dm6]	G	A	3.676e^-4	0.714	INTRON Brf
3L	15013278	3L_15013278_SNP [dm3] 3L_15020178_SNP [dm6]	C	A	3.679e^-4	0.714	INTRON Sytbeta	TF binding site BDTNP1_TFBS_prd
3R	14624252	3R_14624252_SNP [dm3] 3R_18798530_SNP [dm6]	T	G	3.681e^-4	0.714	DOWNSTREAM CG18208 INTERGENIC
3L	8601203	3L_8601203_INS [dm3] 3L_8608103_INS [dm6]	C	CGGAATGCACATTTTCC...	3.691e^-4	0.714	INTRON CG6282
3R	20548627	3R_20548627_SNP [dm3] 3R_24722905_SNP [dm6]	A	G	3.697e^-4	0.714	UPSTREAM snoRNA:Me18S-C1280 INTRON tok
X	12666292	X_12666292_SNP [dm3] X_12772259_SNP [dm6]	A	C	3.698e^-4	0.714	UTR_3_PRIME CG3812 & 1 other
3R	17693762	3R_17693762_SNP [dm3] 3R_21868040_SNP [dm6]	G	A	3.702e^-4	0.714	UTR_5_PRIME Cby UPSTREAM Cby & 1 other DOWNSTREAM CG31174
3R	14465741	3R_14465741_SNP [dm3] 3R_18640019_SNP [dm6]	G	A	3.702e^-4	0.714	INTRON qin & 1 other
3R	12706463	3R_12706463_SNP [dm3] 3R_16880741_SNP [dm6]	T	C	3.702e^-4	0.714	INTRON iab-8
2L	4389054	2L_4389054_SNP [dm3] 2L_4389054_SNP [dm6]	T	C	3.705e^-4	0.714	INTRON Tps1
2R	12347547	2R_12347547_SNP [dm3] 2R_16460042_SNP [dm6]	C	T	3.706e^-4	0.714	INTERGENIC
3L	18835670	3L_18835670_SNP [dm3] 3L_18842570_SNP [dm6]	C	T	3.706e^-4	0.714	INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17253626	2L_17253626_SNP [dm3] 2L_17253626_SNP [dm6]	A	C	3.717e^-4	0.714	INTRON beat-IIIc
2L	3289872	2L_3289872_SNP [dm3] 2L_3289872_SNP [dm6]	A	C	3.721e^-4	0.714	INTERGENIC
3L	10294030	3L_10294030_SNP [dm3] 3L_10300930_SNP [dm6]	A	G	3.728e^-4	0.714	INTERGENIC
3R	19339921	3R_19339921_SNP [dm3] 3R_23514199_SNP [dm6]	T	A	3.729e^-4	0.714	INTRON Irk2
3R	26936709	3R_26936709_SNP [dm3] 3R_31110987_SNP [dm6]	A	T	3.732e^-4	0.714	INTERGENIC
3R	24817663	3R_24817663_SNP [dm3] 3R_28991941_SNP [dm6]	T	G	3.734e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10064275	3L_10064275_SNP [dm3] 3L_10071175_SNP [dm6]	T	A	3.741e^-4	0.714	INTRON dpr6
X	15498662	X_15498662_SNP [dm3] X_15604629_SNP [dm6]	T	G	3.745e^-4	0.714	UTR_3_PRIME sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13399303	2L_13399303_SNP [dm3] 2L_13399303_SNP [dm6]	C	A	3.745e^-4	0.714	SYNONYMOUS_CODING CG7110 UPSTREAM CG10859 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	4685793	3L_4685793_SNP [dm3] 3L_4685793_SNP [dm6]	A	G	3.749e^-4	0.714	INTRON axo
2L	10107015	2L_10107015_SNP [dm3] 2L_10107015_SNP [dm6]	T	A	3.753e^-4	0.714	INTRON CG44153 & 1 other
X	7326686	X_7326686_SNP [dm3] X_7432653_SNP [dm6]	G	C	3.753e^-4	0.714	INTERGENIC
2R	13887555	2R_13887555_SNP [dm3] 2R_18000050_SNP [dm6]	C	T	3.760e^-4	0.714	INTRON dpr13
2L	15242710	2L_15242710_SNP [dm3] 2L_15242710_SNP [dm6]	T	A	3.762e^-4	0.714	INTRON ZnT35C
3R	23393893	3R_23393893_SNP [dm3] 3R_27568171_SNP [dm6]	G	A	3.762e^-4	0.714	UTR_5_PRIME wdb	TF binding site mE1_TFBS_HSA
2L	10426262	2L_10426262_SNP [dm3] 2L_10426262_SNP [dm6]	A	C	3.766e^-4	0.714	UPSTREAM KdelR DOWNSTREAM CG5168 INTRON SmB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12779893	3R_12779893_SNP [dm3] 3R_16954171_SNP [dm6]	T	A	3.777e^-4	0.714	INTRON Abd-B	TF binding site mE1_TFBS_cad
3L	13943550	3L_13943550_SNP [dm3] 3L_13950450_SNP [dm6]	G	T	3.780e^-4	0.714	INTRON CG32137	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20336100	3R_20336100_SNP [dm3] 3R_24510378_SNP [dm6]	A	G	3.790e^-4	0.714	INTRON nAChRbeta2
2L	6732926	2L_6732926_SNP [dm3] 2L_6732926_SNP [dm6]	A	C	3.797e^-4	0.714	UTR_5_PRIME TTLL3B DOWNSTREAM Liprin-alpha	TF binding site mE1_TFBS_cad
3L	5771040	3L_5771040_SNP [dm3] 3L_5777940_SNP [dm6]	T	G	3.798e^-4	0.714	UPSTREAM vito INTRON Myt1
X	8137937	X_8137937_SNP [dm3] X_8243904_SNP [dm6]	T	C	3.802e^-4	0.714	NON_SYNONYMOUS_CODING Trxr-1 UTR_5_PRIME sni UPSTREAM Trxr-1 & 1 other INTRON Trxr-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	7244851	3L_7244851_SNP [dm3] 3L_7251751_SNP [dm6]	A	G	3.805e^-4	0.714	SYNONYMOUS_CODING CG14830 EXON CR43470	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	12783964	3R_12783964_SNP [dm3] 3R_16958242_SNP [dm6]	C	G	3.811e^-4	0.714	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	9940377	3L_9940377_SNP [dm3] 3L_9947277_SNP [dm6]	T	G	3.814e^-4	0.714	INTRON CG34356
2L	9653081	2L_9653081_SNP [dm3] 2L_9653081_SNP [dm6]	C	T	3.818e^-4	0.714	SYNONYMOUS_CODING Apoltp
3R	17693887	3R_17693887_SNP [dm3] 3R_21868165_SNP [dm6]	C	A	3.819e^-4	0.714	UPSTREAM Cby & 1 other DOWNSTREAM CG31174 INTRON Cby
3L	9523248	3L_9523248_SNP [dm3] 3L_9530148_SNP [dm6]	T	C	3.820e^-4	0.714	SYNONYMOUS_CODING Or67a
2L	15011805	2L_15011805_INS [dm3] 2L_15011805_INS [dm6]	A	AG	3.827e^-4	0.714	DOWNSTREAM CR43856 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11023036	3L_11023036_SNP [dm3] 3L_11029936_SNP [dm6]	T	C	3.838e^-4	0.714	DOWNSTREAM CG32081 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Cuticul_5_C25_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results