DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.704e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	3.252e-07
In_3R_K	0.0260

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	17.7496	0.0001
In_3R_K	6.1276	0.0467

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2334 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	8.031e^-14	1.030e^-7	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	1.099e^-13	1.030e^-7	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	2.299e^-13	1.437e^-7	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	6.294e^-13	2.951e^-7	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	1.015e^-12	3.806e^-7	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	2.590e^-12	8.097e^-7	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	5.520e^-12	1.479e^-6	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	9.349e^-12	2.192e^-6	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	1.318e^-11	2.746e^-6	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	4.185e^-11	7.850e^-6	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	6.987e^-11	1.129e^-5	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	7.225e^-11	1.129e^-5	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	1.019e^-10	1.471e^-5	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	4.402e^-10	5.504e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	4.402e^-10	5.504e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	7.833e^-10	9.183e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	9.523e^-10	1.051e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	1.261e^-9	1.258e^-4	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	1.349e^-9	1.258e^-4	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	1.399e^-9	1.258e^-4	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	1.408e^-9	1.258e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	1.478e^-9	1.260e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	1.746e^-9	1.424e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	7.974e^-9	6.232e^-4	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528806	2L_8528806_SNP [dm3] 2L_8528806_SNP [dm6]	A	C	8.438e^-9	6.331e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	1.136e^-8	7.943e^-4	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5762919	2R_5762919_SNP [dm3] 2R_9875414_SNP [dm6]	G	A	1.169e^-8	7.943e^-4	UTR_5_PRIME CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB INTRON CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	1.186e^-8	7.943e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	1.274e^-8	8.243e^-4	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	1.580e^-8	9.879e^-4	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	2.063e^-8	0.001	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5760716	2R_5760716_SNP [dm3] 2R_9873211_SNP [dm6]	C	T	2.656e^-8	0.002	INTRON cbx & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_sens
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	2.992e^-8	0.002	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	3.457e^-8	0.002	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5741733	2R_5741733_SNP [dm3] 2R_9854228_SNP [dm6]	A	G	5.940e^-8	0.003	INTRON CG1516	TF binding site mE1_TFBS_cad
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	6.303e^-8	0.003	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	7.413e^-8	0.004	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5731332	2R_5731332_SNP [dm3] 2R_9843827_SNP [dm6]	C	T	7.576e^-8	0.004	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	8.205e^-8	0.004	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	1.036e^-7	0.005	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8520815	2L_8520815_SNP [dm3] 2L_8520815_SNP [dm6]	T	C	1.064e^-7	0.005	NON_SYNONYMOUS_CODING CG13091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	5735501	2R_5735501_SNP [dm3] 2R_9847996_SNP [dm6]	T	A	1.137e^-7	0.005	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	1.310e^-7	0.006	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8525183	2L_8525183_SNP [dm3] 2L_8525183_SNP [dm6]	G	T	1.477e^-7	0.006	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	1.867e^-7	0.008	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8521004	2L_8521004_SNP [dm3] 2L_8521004_SNP [dm6]	C	A	1.961e^-7	0.008	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	5777768	2R_5777768_DEL [dm3] 2R_9890263_DEL [dm6]	AGACCTTTAA	A	2.093e^-7	0.008	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
2R	5762328	2R_5762328_SNP [dm3] 2R_9874823_SNP [dm6]	A	G	2.175e^-7	0.008	SPLICE_SITE_REGION cbx UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8530229	2L_8530229_SNP [dm3] 2L_8530229_SNP [dm6]	G	A	2.333e^-7	0.009	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	5763531	2R_5763531_SNP [dm3] 2R_9876026_SNP [dm6]	C	T	2.508e^-7	0.009	SYNONYMOUS_CODING CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	3.338e^-7	0.012	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	5762331	2R_5762331_SNP [dm3] 2R_9874826_SNP [dm6]	C	G	3.571e^-7	0.013	UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5771199	2R_5771199_SNP [dm3] 2R_9883694_SNP [dm6]	C	T	3.585e^-7	0.013	UTR_3_PRIME CG1513
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	4.008e^-7	0.014	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2R	5735502	2R_5735502_SNP [dm3] 2R_9847997_SNP [dm6]	C	A	4.546e^-7	0.016	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8530244	2L_8530244_SNP [dm3] 2L_8530244_SNP [dm6]	G	A	4.770e^-7	0.016	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	5735181	2R_5735181_SNP [dm3] 2R_9847676_SNP [dm6]	T	G	5.150e^-7	0.017	UPSTREAM CG1671 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	8517273	2L_8517273_SNP [dm3] 2L_8517273_SNP [dm6]	A	G	5.585e^-7	0.018	NON_SYNONYMOUS_CODING mRpL51 UPSTREAM CG13090 DOWNSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5734458	2R_5734458_SNP [dm3] 2R_9846953_SNP [dm6]	T	G	7.132e^-7	0.023	UPSTREAM Orc6 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	5735512	2R_5735512_SNP [dm3] 2R_9848007_SNP [dm6]	C	T	8.266e^-7	0.026	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	5731874	2R_5731874_SNP [dm3] 2R_9844369_SNP [dm6]	C	A	8.420e^-7	0.026	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	9.392e^-7	0.028	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	9.458e^-7	0.028	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	1.014e^-6	0.029	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8515600	2L_8515600_SNP [dm3] 2L_8515600_SNP [dm6]	T	C	1.019e^-6	0.029	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	1.116e^-6	0.032	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8515461	2L_8515461_SNP [dm3] 2L_8515461_SNP [dm6]	T	C	1.160e^-6	0.032	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5717075	2R_5717075_SNP [dm3] 2R_9829570_SNP [dm6]	G	A	1.682e^-6	0.046	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5738442	2R_5738442_SNP [dm3] 2R_9850937_SNP [dm6]	A	G	1.752e^-6	0.047	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
2L	8514835	2L_8514835_SNP [dm3] 2L_8514835_SNP [dm6]	A	T	1.758e^-6	0.047	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8515035	2L_8515035_SNP [dm3] 2L_8515035_SNP [dm6]	G	T	1.860e^-6	0.049	UPSTREAM PIG-U & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8515387	2L_8515387_SNP [dm3] 2L_8515387_SNP [dm6]	C	T	1.926e^-6	0.05	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515482	2L_8515482_SNP [dm3] 2L_8515482_SNP [dm6]	C	T	2.127e^-6	0.055	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5714577	2R_5714577_INS [dm3] 2R_9827072_INS [dm6]	G	GTA	2.377e^-6	0.06	FRAME_SHIFT dila INTRON dila	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8529262	2L_8529262_SNP [dm3] 2L_8529262_SNP [dm6]	T	C	2.475e^-6	0.061	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2R	5710601	2R_5710601_SNP [dm3] 2R_9823096_SNP [dm6]	T	A	2.507e^-6	0.061	UTR_3_PRIME dila UPSTREAM CG30001	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_ttk
2R	5790017	2R_5790017_SNP [dm3] 2R_9902512_SNP [dm6]	A	T	2.521e^-6	0.061	INTRON CG1441	TF binding site mE1_TFBS_cad
2R	5735690	2R_5735690_SNP [dm3] 2R_9848185_SNP [dm6]	A	G	2.727e^-6	0.066	UPSTREAM Prosalpha7 INTRON CG1671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	5736012	2R_5736012_SNP [dm3] 2R_9848507_SNP [dm6]	G	A	3.131e^-6	0.074	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	3.465e^-6	0.081	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5715403	2R_5715403_SNP [dm3] 2R_9827898_SNP [dm6]	G	A	4.111e^-6	0.095	UPSTREAM dila DOWNSTREAM hebe INTERGENIC
2R	13023236	2R_13023236_SNP [dm3] 2R_17135731_SNP [dm6]	T	G	4.164e^-6	0.095	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	4.185e^-6	0.095	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	8525341	2L_8525341_SNP [dm3] 2L_8525341_SNP [dm6]	C	A	4.470e^-6	0.098	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8523105	2L_8523105_SNP [dm3] 2L_8523105_SNP [dm6]	G	C	4.471e^-6	0.098	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8523133	2L_8523133_SNP [dm3] 2L_8523133_SNP [dm6]	G	A	4.471e^-6	0.098	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8527887	2L_8527887_SNP [dm3] 2L_8527887_SNP [dm6]	C	A	4.530e^-6	0.098	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8467841	2R_8467841_SNP [dm3] 2R_12580336_SNP [dm6]	G	A	4.625e^-6	0.099	NON_SYNONYMOUS_CODING Sin3A
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	4.786e^-6	0.1	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	4.786e^-6	0.1	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5721479	2R_5721479_SNP [dm3] 2R_9833974_SNP [dm6]	G	C	4.831e^-6	0.1	UPSTREAM hebe INTRON hebe	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8288353	3L_8288353_SNP [dm3] 3L_8295253_SNP [dm6]	T	A	4.897e^-6	0.1	UTR_5_PRIME CG7201
2R	5781559	2R_5781559_SNP [dm3] 2R_9894054_SNP [dm6]	C	T	4.949e^-6	0.1	NON_SYNONYMOUS_CODING CG30007
2R	5714614	2R_5714614_SNP [dm3] 2R_9827109_SNP [dm6]	T	C	5.187e^-6	0.102	NON_SYNONYMOUS_CODING dila DOWNSTREAM hebe	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5779845	2R_5779845_SNP [dm3] 2R_9892340_SNP [dm6]	A	T	5.257e^-6	0.102	NON_SYNONYMOUS_CODING CG30007 UPSTREAM CG1513	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5777267	2R_5777267_SNP [dm3] 2R_9889762_SNP [dm6]	G	A	5.280e^-6	0.102	UPSTREAM CG30008 DOWNSTREAM CG12923 INTRON CG1513
2R	5707119	2R_5707119_SNP [dm3] 2R_9819614_SNP [dm6]	C	T	5.287e^-6	0.102	UPSTREAM CG34033 INTRON CG1648	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	19066093	3R_19066093_SNP [dm3] 3R_23240371_SNP [dm6]	T	G	5.691e^-6	0.108	UPSTREAM CG4467 INTRON CG4467
2R	5716533	2R_5716533_SNP [dm3] 2R_9829028_SNP [dm6]	C	G	5.694e^-6	0.108	NON_SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8515377	2L_8515377_SNP [dm3] 2L_8515377_SNP [dm6]	T	C	5.843e^-6	0.11	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	5.949e^-6	0.11	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2L	8539867	2L_8539867_SNP [dm3] 2L_8539867_SNP [dm6]	G	A	6.007e^-6	0.11	INTRON CG17834
2L	8514798	2L_8514798_SNP [dm3] 2L_8514798_SNP [dm6]	C	T	6.190e^-6	0.112	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8515386	2L_8515386_SNP [dm3] 2L_8515386_SNP [dm6]	T	C	6.206e^-6	0.112	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5716364	2R_5716364_SNP [dm3] 2R_9828859_SNP [dm6]	T	G	6.280e^-6	0.112	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8530374	2L_8530374_SNP [dm3] 2L_8530374_SNP [dm6]	T	C	6.506e^-6	0.115	INTRON CG17834	TF binding site mE1_TFBS_HSA
X	14033535	X_14033535_INS [dm3] X_14139502_INS [dm6]	T	TT	6.724e^-6	0.118	INTERGENIC
2L	8525339	2L_8525339_SNP [dm3] 2L_8525339_SNP [dm6]	G	A	6.961e^-6	0.12	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	6.990e^-6	0.12	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8515362	2L_8515362_SNP [dm3] 2L_8515362_SNP [dm6]	T	G	7.886e^-6	0.133	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5708569	2R_5708569_SNP [dm3] 2R_9821064_SNP [dm6]	T	A	7.890e^-6	0.133	SYNONYMOUS_CODING CG34033 DOWNSTREAM CG30001
2L	8529353	2L_8529353_DEL [dm3] 2L_8529353_DEL [dm6]	ATAAAAA	A	8.306e^-6	0.139	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_prd
2L	8511667	2L_8511667_SNP [dm3] 2L_8511667_SNP [dm6]	C	G	8.838e^-6	0.147	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5783305	2R_5783305_SNP [dm3] 2R_9895800_SNP [dm6]	C	A	9.168e^-6	0.15	NON_SYNONYMOUS_CODING CG30007
2R	13920139	2R_13920139_SNP [dm3] 2R_18032634_SNP [dm6]	A	G	9.213e^-6	0.15	INTERGENIC
2R	5707155	2R_5707155_SNP [dm3] 2R_9819650_SNP [dm6]	G	C	9.301e^-6	0.15	UPSTREAM CG34033 INTRON CG1648	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10704121	2L_10704121_SNP [dm3] 2L_10704121_SNP [dm6]	A	T	9.491e^-6	0.152	INTRON Lip2 & 1 other
2L	8513167	2L_8513167_SNP [dm3] 2L_8513167_SNP [dm6]	C	T	9.587e^-6	0.152	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	19066142	3R_19066142_SNP [dm3] 3R_23240420_SNP [dm6]	A	G	9.748e^-6	0.152	UPSTREAM CG4467 INTRON CG4467
2L	8515266	2L_8515266_SNP [dm3] 2L_8515266_SNP [dm6]	A	G	9.752e^-6	0.152	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5722454	2R_5722454_SNP [dm3] 2R_9834949_SNP [dm6]	T	A	1.029e^-5	0.159	INTRON hebe
3R	26907593	3R_26907593_DEL [dm3] 3R_31081871_DEL [dm6]	CTTATAAT	A	1.034e^-5	0.159	INTRON Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19066161	3R_19066161_SNP [dm3] 3R_23240439_SNP [dm6]	A	G	1.061e^-5	0.162	UPSTREAM CG4467 INTRON CG4467
2L	8529430	2L_8529430_SNP [dm3] 2L_8529430_SNP [dm6]	T	A	1.144e^-5	0.173	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2R	5780076	2R_5780076_SNP [dm3] 2R_9892571_SNP [dm6]	A	G	1.165e^-5	0.175	UPSTREAM CG1513 INTRON CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5705059	2R_5705059_SNP [dm3] 2R_9817554_SNP [dm6]	C	T	1.186e^-5	0.176	DOWNSTREAM lectin-46Cb INTRON CG1648 & 1 other
3L	18024424	3L_18024424_SNP [dm3] 3L_18031324_SNP [dm6]	C	T	1.192e^-5	0.176	INTRON Eip75B
2R	5716973	2R_5716973_SNP [dm3] 2R_9829468_SNP [dm6]	A	T	1.205e^-5	0.177	NON_SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8468002	2R_8468002_SNP [dm3] 2R_12580497_SNP [dm6]	A	T	1.220e^-5	0.177	SYNONYMOUS_CODING Sin3A
2R	5708078	2R_5708078_SNP [dm3] 2R_9820573_SNP [dm6]	G	A	1.285e^-5	0.185	NON_SYNONYMOUS_CODING CG34033 UPSTREAM CG1648 DOWNSTREAM CG30001	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8512026	2L_8512026_SNP [dm3] 2L_8512026_SNP [dm6]	G	A	1.340e^-5	0.191	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	8457068	2R_8457068_SNP [dm3] 2R_12569563_SNP [dm6]	T	C	1.349e^-5	0.191	SYNONYMOUS_CODING Ak6 UPSTREAM stil DOWNSTREAM Cyp301a1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	17084975	2R_17084975_SNP [dm3] 2R_21197470_SNP [dm6]	A	C	1.363e^-5	0.191	INTRON Lapsyn
2L	8529328	2L_8529328_SNP [dm3] 2L_8529328_SNP [dm6]	G	A	1.389e^-5	0.191	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2R	5780578	2R_5780578_SNP [dm3] 2R_9893073_SNP [dm6]	T	A	1.403e^-5	0.191	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
3R	20508781	3R_20508781_SNP [dm3] 3R_24683059_SNP [dm6]	A	C	1.410e^-5	0.191	INTRON slo
3R	26751873	3R_26751873_SNP [dm3] 3R_30926151_SNP [dm6]	C	T	1.418e^-5	0.191	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
2R	11334294	2R_11334294_SNP [dm3] 2R_15446789_SNP [dm6]	G	T	1.432e^-5	0.191	INTRON CG43729
3L	10377618	3L_10377618_SNP [dm3] 3L_10384518_SNP [dm6]	A	C	1.443e^-5	0.191	INTERGENIC
2L	8529275	2L_8529275_SNP [dm3] 2L_8529275_SNP [dm6]	A	G	1.445e^-5	0.191	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8525344	2L_8525344_SNP [dm3] 2L_8525344_SNP [dm6]	G	A	1.448e^-5	0.191	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525346	2L_8525346_SNP [dm3] 2L_8525346_SNP [dm6]	C	T	1.448e^-5	0.191	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2R	5778612	2R_5778612_SNP [dm3] 2R_9891107_SNP [dm6]	G	A	1.555e^-5	0.204	UTR_3_PRIME CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2R	5781414	2R_5781414_SNP [dm3] 2R_9893909_SNP [dm6]	T	A	1.580e^-5	0.206	INTRON CG30007
2L	8525349	2L_8525349_SNP [dm3] 2L_8525349_SNP [dm6]	C	T	1.600e^-5	0.207	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8512797	2L_8512797_SNP [dm3] 2L_8512797_SNP [dm6]	G	T	1.619e^-5	0.208	UPSTREAM CG13096 INTRON CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8515314	2L_8515314_SNP [dm3] 2L_8515314_SNP [dm6]	A	C	1.694e^-5	0.216	UPSTREAM CG13097 INTRON PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16565938	3L_16565938_SNP [dm3] 3L_16572838_SNP [dm6]	T	A	1.711e^-5	0.217	UPSTREAM Mipp1 INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8523537	2L_8523537_SNP [dm3] 2L_8523537_SNP [dm6]	C	A	1.729e^-5	0.218	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8539516	2L_8539516_SNP [dm3] 2L_8539516_SNP [dm6]	C	T	1.753e^-5	0.219	INTRON CG17834
2R	5720273	2R_5720273_SNP [dm3] 2R_9832768_SNP [dm6]	A	G	1.783e^-5	0.221	INTRON hebe
2L	8525348	2L_8525348_SNP [dm3] 2L_8525348_SNP [dm6]	T	A	1.792e^-5	0.221	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	10939518	2L_10939518_SNP [dm3] 2L_10939518_SNP [dm6]	A	G	1.809e^-5	0.222	INTRON dpr2
2L	4929676	2L_4929676_SNP [dm3] 2L_4929676_SNP [dm6]	A	G	1.849e^-5	0.225	INTRON hoe1
2R	5716535	2R_5716535_SNP [dm3] 2R_9829030_SNP [dm6]	T	C	1.882e^-5	0.228	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8522155	2L_8522155_SNP [dm3] 2L_8522155_SNP [dm6]	A	C	1.906e^-5	0.229	UTR_5_PRIME Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	24121146	3R_24121146_SNP [dm3] 3R_28295424_SNP [dm6]	T	G	2.029e^-5	0.242	UPSTREAM CR44229 DOWNSTREAM CG17856 INTERGENIC
3R	19066076	3R_19066076_SNP [dm3] 3R_23240354_SNP [dm6]	G	A	2.117e^-5	0.251	UPSTREAM CG4467 INTRON CG4467
3R	19066109	3R_19066109_SNP [dm3] 3R_23240387_SNP [dm6]	C	G	2.218e^-5	0.262	UPSTREAM CG4467 INTRON CG4467
3R	26390211	3R_26390211_SNP [dm3] 3R_30564489_SNP [dm6]	G	A	2.308e^-5	0.264	INTRON tmod	TF binding site BDTNP1_TFBS_dl
2L	3297684	2L_3297684_SNP [dm3] 2L_3297684_SNP [dm6]	T	C	2.314e^-5	0.264	INTRON CG9663
2R	5781437	2R_5781437_SNP [dm3] 2R_9893932_SNP [dm6]	A	C	2.322e^-5	0.264	INTRON CG30007
2L	8526541	2L_8526541_SNP [dm3] 2L_8526541_SNP [dm6]	T	C	2.346e^-5	0.264	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others	TF binding site mE1_TFBS_cad
2L	6230924	2L_6230924_SNP [dm3] 2L_6230924_SNP [dm6]	C	A	2.346e^-5	0.264	UPSTREAM CR44823 INTERGENIC
2L	6230925	2L_6230925_SNP [dm3] 2L_6230925_SNP [dm6]	A	T	2.346e^-5	0.264	UPSTREAM CR44823 INTERGENIC
3L	8386486	3L_8386486_SNP [dm3] 3L_8393386_SNP [dm6]	G	C	2.350e^-5	0.264	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	17746236	X_17746236_SNP [dm3] X_17852203_SNP [dm6]	C	A	2.357e^-5	0.264	NON_SYNONYMOUS_CODING CG32554 DOWNSTREAM CG6506 & 1 other	TF binding site mE1_TFBS_sens
2R	5735754	2R_5735754_SNP [dm3] 2R_9848249_SNP [dm6]	C	T	2.366e^-5	0.264	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8531564	2L_8531564_SNP [dm3] 2L_8531564_SNP [dm6]	A	G	2.400e^-5	0.266	INTRON CG17834
3R	19066061	3R_19066061_SNP [dm3] 3R_23240339_SNP [dm6]	A	G	2.438e^-5	0.269	UPSTREAM CG4467 INTRON CG4467
3R	26907606	3R_26907606_SNP [dm3] 3R_31081884_SNP [dm6]	T	A	2.459e^-5	0.269	INTRON Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15468087	2R_15468087_SNP [dm3] 2R_19580582_SNP [dm6]	G	C	2.469e^-5	0.269	INTRON sm
3L	14189504	3L_14189504_SNP [dm3] 3L_14196404_SNP [dm6]	A	T	2.569e^-5	0.279	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	5783798	2R_5783798_SNP [dm3] 2R_9896293_SNP [dm6]	G	T	2.598e^-5	0.28	NON_SYNONYMOUS_CODING CG30007
2R	17084874	2R_17084874_SNP [dm3] 2R_21197369_SNP [dm6]	G	A	2.646e^-5	0.283	INTRON Lapsyn
2L	8529270	2L_8529270_SNP [dm3] 2L_8529270_SNP [dm6]	C	A	2.668e^-5	0.283	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
3R	9356198	3R_9356198_SNP [dm3] 3R_13530476_SNP [dm6]	T	G	2.676e^-5	0.283	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11880191	2R_11880191_SNP [dm3] 2R_15992686_SNP [dm6]	C	G	2.685e^-5	0.283	UTR_5_PRIME CG8320 UPSTREAM Pex11 DOWNSTREAM ATPCL	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1235419	2L_1235419_SNP [dm3] 2L_1235419_SNP [dm6]	C	G	2.718e^-5	0.285	INTERGENIC
2L	8540528	2L_8540528_SNP [dm3] 2L_8540528_SNP [dm6]	C	T	2.807e^-5	0.292	SYNONYMOUS_CODING CG17834	TF binding site BDTNP1_TFBS_twi
3R	14102835	3R_14102835_SNP [dm3] 3R_18277113_SNP [dm6]	C	A	2.843e^-5	0.295	INTRON eIF-1A
3R	26389955	3R_26389955_SNP [dm3] 3R_30564233_SNP [dm6]	C	T	2.895e^-5	0.298	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	14760140	2R_14760140_DEL [dm3] 2R_18872635_DEL [dm6]	CATAATT	C	2.967e^-5	0.303	INTERGENIC
2R	5785120	2R_5785120_SNP [dm3] 2R_9897615_SNP [dm6]	C	T	2.975e^-5	0.303	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15659776	2R_15659776_SNP [dm3] 2R_19772271_SNP [dm6]	C	T	2.987e^-5	0.303	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8512024	2L_8512024_SNP [dm3] 2L_8512024_SNP [dm6]	T	G	3.042e^-5	0.306	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	5763605	2R_5763605_SNP [dm3] 2R_9876100_SNP [dm6]	T	G	3.047e^-5	0.306	UTR_3_PRIME CG12744 DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4929944	2L_4929944_SNP [dm3] 2L_4929944_SNP [dm6]	T	G	3.163e^-5	0.315	INTRON hoe1
2L	8530717	2L_8530717_SNP [dm3] 2L_8530717_SNP [dm6]	A	T	3.199e^-5	0.315	INTRON CG17834
3R	11998893	3R_11998893_SNP [dm3] 3R_16173171_SNP [dm6]	A	G	3.199e^-5	0.315	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8545652	2L_8545652_SNP [dm3] 2L_8545652_SNP [dm6]	A	G	3.215e^-5	0.315	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_Kr
2L	5389274	2L_5389274_SNP [dm3] 2L_5389274_SNP [dm6]	T	A	3.224e^-5	0.315	DOWNSTREAM CR44745 INTERGENIC
2L	8512102	2L_8512102_SNP [dm3] 2L_8512102_SNP [dm6]	T	C	3.300e^-5	0.321	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	23263348	3R_23263348_SNP [dm3] 3R_27437626_SNP [dm6]	C	G	3.367e^-5	0.325	UPSTREAM side INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19066082	3R_19066082_SNP [dm3] 3R_23240360_SNP [dm6]	G	T	3.379e^-5	0.325	UPSTREAM CG4467 INTRON CG4467
2L	8512125	2L_8512125_INS [dm3] 2L_8512125_INS [dm6]	T	TCGATTCAAACTCATGCTAA...	3.502e^-5	0.334	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8512119	2L_8512119_INS [dm3] 2L_8512119_INS [dm6]	T	TATTAGTAGAGACAGAC...	3.511e^-5	0.334	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	8473085	2R_8473085_SNP [dm3] 2R_12585580_SNP [dm6]	A	G	3.542e^-5	0.335	SYNONYMOUS_CODING Sin3A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13916077	2R_13916077_SNP [dm3] 2R_18028572_SNP [dm6]	G	A	3.555e^-5	0.335	INTERGENIC
2R	13916045	2R_13916045_SNP [dm3] 2R_18028540_SNP [dm6]	A	T	3.589e^-5	0.336	INTERGENIC
2L	8531131	2L_8531131_SNP [dm3] 2L_8531131_SNP [dm6]	C	A	3.610e^-5	0.336	INTRON CG17834
2R	15690713	2R_15690713_SNP [dm3] 2R_19803208_SNP [dm6]	C	G	3.617e^-5	0.336	DOWNSTREAM tRNA:K2:56EF INTERGENIC
2L	1235477	2L_1235477_SNP [dm3] 2L_1235477_SNP [dm6]	C	T	3.646e^-5	0.337	INTERGENIC
3L	17829248	3L_17829248_SNP [dm3] 3L_17836148_SNP [dm6]	A	G	3.768e^-5	0.344	UPSTREAM CG32189 INTRON Grd	transposable element FlyBase
3R	19066117	3R_19066117_SNP [dm3] 3R_23240395_SNP [dm6]	C	T	3.787e^-5	0.344	UPSTREAM CG4467 INTRON CG4467
2R	5783795	2R_5783795_SNP [dm3] 2R_9896290_SNP [dm6]	C	A	3.789e^-5	0.344	NON_SYNONYMOUS_CODING CG30007
2L	1657752	2L_1657752_SNP [dm3] 2L_1657752_SNP [dm6]	T	G	3.809e^-5	0.344	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
3R	20013489	3R_20013489_SNP [dm3] 3R_24187767_SNP [dm6]	G	A	3.812e^-5	0.344	UTR_3_PRIME CG5515 & 1 other	TF binding site mE1_TFBS_sens
2R	5784919	2R_5784919_SNP [dm3] 2R_9897414_SNP [dm6]	A	C	3.869e^-5	0.347	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15074805	2R_15074805_SNP [dm3] 2R_19187300_SNP [dm6]	G	C	3.933e^-5	0.35	INTRON hppy
3L	3255154	3L_3255154_INS [dm3] 3L_3255154_INS [dm6]	C	CCC	3.938e^-5	0.35	DOWNSTREAM CR43626 INTERGENIC
3L	14189503	3L_14189503_SNP [dm3] 3L_14196403_SNP [dm6]	G	A	4.003e^-5	0.354	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	3777346	2R_3777346_SNP [dm3] 2R_7889841_SNP [dm6]	C	T	4.038e^-5	0.354	UPSTREAM CG30377 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13916050	2R_13916050_SNP [dm3] 2R_18028545_SNP [dm6]	T	G	4.062e^-5	0.354	INTERGENIC
2R	5807645	2R_5807645_SNP [dm3] 2R_9920140_SNP [dm6]	G	A	4.089e^-5	0.354	INTRON Mef2
3R	19066092	3R_19066092_SNP [dm3] 3R_23240370_SNP [dm6]	G	A	4.090e^-5	0.354	UPSTREAM CG4467 INTRON CG4467
3R	23150192	3R_23150192_INS [dm3] 3R_27324470_INS [dm6]	C	CGGATGGAC	4.108e^-5	0.354	INTERGENIC
2L	9316308	2L_9316308_SNP [dm3] 2L_9316308_SNP [dm6]	T	C	4.115e^-5	0.354	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	13839060	2L_13839060_SNP [dm3] 2L_13839060_SNP [dm6]	G	A	4.140e^-5	0.354	DOWNSTREAM CG33307 INTRON CenG1A
2R	12565484	2R_12565484_SNP [dm3] 2R_16677979_SNP [dm6]	T	C	4.149e^-5	0.354	INTRON CG30463
2R	5785084	2R_5785084_SNP [dm3] 2R_9897579_SNP [dm6]	C	A	4.223e^-5	0.357	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5711470	2R_5711470_SNP [dm3] 2R_9823965_SNP [dm6]	C	G	4.225e^-5	0.357	NON_SYNONYMOUS_CODING dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26389923	3R_26389923_SNP [dm3] 3R_30564201_SNP [dm6]	C	G	4.279e^-5	0.36	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	5720223	2R_5720223_SNP [dm3] 2R_9832718_SNP [dm6]	A	T	4.402e^-5	0.369	INTRON hebe
3L	17829802	3L_17829802_DEL [dm3] 3L_17836702_DEL [dm6]	AACTGA	A	4.453e^-5	0.371	INTRON Grd
X	4860923	X_4860923_INS [dm3] X_4966890_INS [dm6]	A	AA	4.529e^-5	0.373	INTRON CR44833	regulatory region REDfly_CRMs
2L	8111229	2L_8111229_SNP [dm3] 2L_8111229_SNP [dm6]	G	A	4.577e^-5	0.373	UTR_3_PRIME Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15690575	2R_15690575_SNP [dm3] 2R_19803070_SNP [dm6]	C	T	4.581e^-5	0.373	DOWNSTREAM tRNA:K2:56EF INTERGENIC
2R	13919968	2R_13919968_SNP [dm3] 2R_18032463_SNP [dm6]	G	A	4.585e^-5	0.373	INTERGENIC
2R	13919973	2R_13919973_SNP [dm3] 2R_18032468_SNP [dm6]	G	A	4.585e^-5	0.373	INTERGENIC
2L	7442983	2L_7442983_SNP [dm3] 2L_7442983_SNP [dm6]	C	G	4.622e^-5	0.373	UPSTREAM CG5973 INTRON CG5973
2R	14993373	2R_14993373_SNP [dm3] 2R_19105868_SNP [dm6]	A	T	4.654e^-5	0.373	INTRON 5-HT1A
3R	26745266	3R_26745266_SNP [dm3] 3R_30919544_SNP [dm6]	T	G	4.671e^-5	0.373	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4143536	3L_4143536_SNP [dm3] 3L_4143536_SNP [dm6]	G	A	4.672e^-5	0.373	SYNONYMOUS_CODING CG32260 INTRON CG32260
2R	11880074	2R_11880074_SNP [dm3] 2R_15992569_SNP [dm6]	C	T	4.673e^-5	0.373	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26389895	3R_26389895_SNP [dm3] 3R_30564173_SNP [dm6]	T	A	4.702e^-5	0.374	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	18541370	X_18541370_SNP [dm3] X_18647337_SNP [dm6]	A	T	4.832e^-5	0.382	UTR_5_PRIME Rip11 UPSTREAM CG6540	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	12204990	3R_12204990_SNP [dm3] 3R_16379268_SNP [dm6]	C	T	4.862e^-5	0.383	INTRON ss
2L	8528677	2L_8528677_SNP [dm3] 2L_8528677_SNP [dm6]	A	T	4.889e^-5	0.383	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
2L	5968517	2L_5968517_SNP [dm3] 2L_5968517_SNP [dm6]	T	A	4.909e^-5	0.383	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13916057	2R_13916057_SNP [dm3] 2R_18028552_SNP [dm6]	A	G	4.916e^-5	0.383	INTERGENIC
2L	8506924	2L_8506924_SNP [dm3] 2L_8506924_SNP [dm6]	G	A	4.939e^-5	0.383	UPSTREAM Dh31 INTERGENIC
2L	2039417	2L_2039417_SNP [dm3] 2L_2039417_SNP [dm6]	T	G	4.989e^-5	0.385	UPSTREAM Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_dl
2R	13917987	2R_13917987_SNP [dm3] 2R_18030482_SNP [dm6]	A	T	5.020e^-5	0.386	INTERGENIC
3R	26389829	3R_26389829_SNP [dm3] 3R_30564107_SNP [dm6]	A	C	5.138e^-5	0.393	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	1228551	2L_1228551_SNP [dm3] 2L_1228551_SNP [dm6]	C	A	5.157e^-5	0.393	SYNONYMOUS_CODING CG42329
2L	8514725	2L_8514725_SNP [dm3] 2L_8514725_SNP [dm6]	C	T	5.231e^-5	0.396	SYNONYMOUS_CODING CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4142811	3L_4142811_SNP [dm3] 3L_4142811_SNP [dm6]	T	G	5.266e^-5	0.396	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
2L	15458068	2L_15458068_SNP [dm3] 2L_15458068_SNP [dm6]	T	G	5.268e^-5	0.396	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	17829178	3L_17829178_SNP [dm3] 3L_17836078_SNP [dm6]	G	A	5.279e^-5	0.396	UPSTREAM CG32189 INTRON Grd	transposable element FlyBase
2L	8529325	2L_8529325_SNP [dm3] 2L_8529325_SNP [dm6]	G	T	5.332e^-5	0.398	START_GAINED CG17834 UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2R	5710510	2R_5710510_INS [dm3] 2R_9823005_INS [dm6]	T	TATATA	5.377e^-5	0.4	UPSTREAM CG30001 DOWNSTREAM dila INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_ttk
2L	5035443	2L_5035443_SNP [dm3] 2L_5035443_SNP [dm6]	G	A	5.392e^-5	0.4	SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10377578	3L_10377578_SNP [dm3] 3L_10384478_SNP [dm6]	A	C	5.525e^-5	0.406	INTERGENIC
2R	5784679	2R_5784679_SNP [dm3] 2R_9897174_SNP [dm6]	A	G	5.539e^-5	0.406	SYNONYMOUS_CODING CG30007
2L	19214969	2L_19214969_SNP [dm3] 2L_19214969_SNP [dm6]	T	A	5.555e^-5	0.406	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15397459	2R_15397459_SNP [dm3] 2R_19509954_SNP [dm6]	T	C	5.568e^-5	0.406	NON_SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
3L	18024426	3L_18024426_SNP [dm3] 3L_18031326_SNP [dm6]	A	G	5.613e^-5	0.408	INTRON Eip75B
X	14265072	X_14265072_DEL [dm3] X_14371039_DEL [dm6]	GCTGTAAATCTGG...	G	5.640e^-5	0.408	INTRON dpr8
2L	8512136	2L_8512136_INS [dm3] 2L_8512136_INS [dm6]	A	AAAACATTAACATATTAACT...	5.662e^-5	0.408	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	5785090	2R_5785090_SNP [dm3] 2R_9897585_SNP [dm6]	T	C	5.697e^-5	0.408	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4579529	3L_4579529_SNP [dm3] 3L_4579529_SNP [dm6]	T	C	5.734e^-5	0.408	INTRON CG42540
2R	5735871	2R_5735871_SNP [dm3] 2R_9848366_SNP [dm6]	G	T	5.744e^-5	0.408	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10201246	2R_10201246_SNP [dm3] 2R_14313741_SNP [dm6]	G	C	5.789e^-5	0.408	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15458384	2L_15458384_SNP [dm3] 2L_15458384_SNP [dm6]	T	C	5.792e^-5	0.408	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14160357	3L_14160357_SNP [dm3] 3L_14167257_SNP [dm6]	T	C	5.793e^-5	0.408	INTERGENIC	regulatory region REDfly_CRMs
3L	12049992	3L_12049992_DEL [dm3] 3L_12056892_DEL [dm6]	ATCAG	T	5.818e^-5	0.408	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14103134	3R_14103134_SNP [dm3] 3R_18277412_SNP [dm6]	G	A	5.845e^-5	0.408	DOWNSTREAM CG7142 INTRON eIF-1A
2R	11750944	2R_11750944_SNP [dm3] 2R_15863439_SNP [dm6]	T	C	5.847e^-5	0.408	UPSTREAM Gpo-1 DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4626885	2R_4626885_SNP [dm3] 2R_8739380_SNP [dm6]	G	T	5.925e^-5	0.412	INTRON CG8740	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	13023226	2R_13023226_SNP [dm3] 2R_17135721_SNP [dm6]	A	G	5.983e^-5	0.414	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
3L	10349544	3L_10349544_SNP [dm3] 3L_10356444_SNP [dm6]	A	T	6.068e^-5	0.418	INTRON CR44327
2R	8466384	2R_8466384_SNP [dm3] 2R_12578879_SNP [dm6]	A	G	6.122e^-5	0.418	INTRON Sin3A
2L	15458124	2L_15458124_SNP [dm3] 2L_15458124_SNP [dm6]	T	A	6.127e^-5	0.418	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8528781	2L_8528781_SNP [dm3] 2L_8528781_SNP [dm6]	G	C	6.132e^-5	0.418	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15458421	2L_15458421_SNP [dm3] 2L_15458421_SNP [dm6]	T	G	6.149e^-5	0.418	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14289841	3L_14289841_SNP [dm3] 3L_14296741_SNP [dm6]	T	G	6.223e^-5	0.421	INTRON fz
2L	8528755	2L_8528755_SNP [dm3] 2L_8528755_SNP [dm6]	A	G	6.310e^-5	0.425	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8461118	2R_8461118_SNP [dm3] 2R_12573613_SNP [dm6]	A	G	6.358e^-5	0.425	SYNONYMOUS_CODING ClC-b	TF binding site mE1_TFBS_sens
3L	12050044	3L_12050044_SNP [dm3] 3L_12056944_SNP [dm6]	A	G	6.368e^-5	0.425	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5784731	2R_5784731_SNP [dm3] 2R_9897226_SNP [dm6]	C	A	6.389e^-5	0.425	NON_SYNONYMOUS_CODING CG30007
2R	9165381	2R_9165381_SNP [dm3] 2R_13277876_SNP [dm6]	T	C	6.389e^-5	0.425	INTRON Dh31-R
2L	13057951	2L_13057951_SNP [dm3] 2L_13057951_SNP [dm6]	A	G	6.480e^-5	0.426	INTRON CG9932
3L	4144192	3L_4144192_SNP [dm3] 3L_4144192_SNP [dm6]	A	C	6.481e^-5	0.426	INTRON CG32260
3L	18073712	3L_18073712_SNP [dm3] 3L_18080612_SNP [dm6]	T	C	6.511e^-5	0.426	DOWNSTREAM CR43253 INTERGENIC
3L	5675367	3L_5675367_SNP [dm3] 3L_5682267_SNP [dm6]	A	G	6.530e^-5	0.426	INTRON sif
3R	26387922	3R_26387922_SNP [dm3] 3R_30562200_SNP [dm6]	C	T	6.554e^-5	0.426	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	4144201	3L_4144201_SNP [dm3] 3L_4144201_SNP [dm6]	C	A	6.566e^-5	0.426	INTRON CG32260
3L	4144236	3L_4144236_SNP [dm3] 3L_4144236_SNP [dm6]	C	T	6.566e^-5	0.426	INTRON CG32260
2L	8540525	2L_8540525_SNP [dm3] 2L_8540525_SNP [dm6]	G	C	6.647e^-5	0.429	SYNONYMOUS_CODING CG17834	TF binding site BDTNP1_TFBS_twi
2L	6695943	2L_6695943_SNP [dm3] 2L_6695943_SNP [dm6]	G	A	6.676e^-5	0.429	INTRON Tsp
2L	8530163	2L_8530163_SNP [dm3] 2L_8530163_SNP [dm6]	G	A	6.680e^-5	0.429	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	12050050	3L_12050050_SNP [dm3] 3L_12056950_SNP [dm6]	C	T	6.737e^-5	0.43	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19066135	3R_19066135_SNP [dm3] 3R_23240413_SNP [dm6]	A	G	6.740e^-5	0.43	UPSTREAM CG4467 INTRON CG4467
3L	17830235	3L_17830235_SNP [dm3] 3L_17837135_SNP [dm6]	T	C	6.939e^-5	0.439	INTRON Grd	TF binding site BDTNP1_TFBS_da
2L	3505683	2L_3505683_SNP [dm3] 2L_3505683_SNP [dm6]	T	A	6.964e^-5	0.439	INTRON tim	TF binding site BDTNP1_TFBS_twi
2L	15458192	2L_15458192_SNP [dm3] 2L_15458192_SNP [dm6]	C	T	6.992e^-5	0.439	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15458391	2L_15458391_DEL [dm3] 2L_15458391_DEL [dm6]	TTCACCCGCATT...	T	6.992e^-5	0.439	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1232342	2L_1232342_SNP [dm3] 2L_1232342_SNP [dm6]	G	C	7.026e^-5	0.439	INTERGENIC
3L	11429295	3L_11429295_SNP [dm3] 3L_11436195_SNP [dm6]	A	T	7.068e^-5	0.439	UPSTREAM CG6149 EXON CR44548	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12630150	3L_12630150_SNP [dm3] 3L_12637050_SNP [dm6]	A	C	7.068e^-5	0.439	INTRON CR32111
3R	26390325	3R_26390325_SNP [dm3] 3R_30564603_SNP [dm6]	G	C	7.083e^-5	0.439	INTRON tmod
2R	5697926	2R_5697926_SNP [dm3] 2R_9810421_SNP [dm6]	G	A	7.098e^-5	0.439	DOWNSTREAM CG1648 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	17085067	2R_17085067_SNP [dm3] 2R_21197562_SNP [dm6]	A	C	7.171e^-5	0.442	INTRON Lapsyn
2L	15458494	2L_15458494_SNP [dm3] 2L_15458494_SNP [dm6]	G	T	7.201e^-5	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10377696	3L_10377696_DEL [dm3] 3L_10384596_DEL [dm6]	AA	A	7.275e^-5	0.446	INTERGENIC
2R	11330883	2R_11330883_SNP [dm3] 2R_15443378_SNP [dm6]	G	A	7.295e^-5	0.446	INTRON CG43729
2L	8523117	2L_8523117_SNP [dm3] 2L_8523117_SNP [dm6]	A	G	7.323e^-5	0.446	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	15458161	2L_15458161_SNP [dm3] 2L_15458161_SNP [dm6]	A	T	7.392e^-5	0.448	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10378012	3L_10378012_SNP [dm3] 3L_10384912_SNP [dm6]	A	G	7.406e^-5	0.448	INTERGENIC
2R	8474978	2R_8474978_SNP [dm3] 2R_12587473_SNP [dm6]	C	A	7.480e^-5	0.451	INTRON Sin3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	3775699	2R_3775699_SNP [dm3] 2R_7888194_SNP [dm6]	A	G	7.516e^-5	0.452	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17316615	2R_17316615_SNP [dm3] 2R_21429110_SNP [dm6]	G	A	7.566e^-5	0.453	INTRON Sdc	TF binding site BDTNP1_TFBS_sna
2R	5706393	2R_5706393_SNP [dm3] 2R_9818888_SNP [dm6]	C	A	7.620e^-5	0.455	DOWNSTREAM lectin-46Ca INTRON CG1648
2R	11264113	2R_11264113_SNP [dm3] 2R_15376608_SNP [dm6]	G	T	7.719e^-5	0.456	UPSTREAM CR43105 & 1 other DOWNSTREAM dup INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	1578579	2L_1578579_SNP [dm3] 2L_1578579_SNP [dm6]	G	T	7.730e^-5	0.456	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1578586	2L_1578586_SNP [dm3] 2L_1578586_SNP [dm6]	C	A	7.730e^-5	0.456	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14102934	3R_14102934_SNP [dm3] 3R_18277212_SNP [dm6]	T	C	7.738e^-5	0.456	DOWNSTREAM CG7142 INTRON eIF-1A
2L	13090763	2L_13090763_SNP [dm3] 2L_13090763_SNP [dm6]	C	T	7.796e^-5	0.458	DOWNSTREAM CR44197 INTERGENIC
3L	14992538	3L_14992538_SNP [dm3] 3L_14999438_SNP [dm6]	A	G	7.868e^-5	0.46	UPSTREAM Prosbeta2 INTRON mRpL39	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	8468822	2R_8468822_SNP [dm3] 2R_12581317_SNP [dm6]	A	G	7.870e^-5	0.46	SYNONYMOUS_CODING Sin3A	TF binding site mE1_TFBS_cad
2L	1235884	2L_1235884_SNP [dm3] 2L_1235884_SNP [dm6]	A	T	7.967e^-5	0.464	INTERGENIC
2L	1228294	2L_1228294_SNP [dm3] 2L_1228294_SNP [dm6]	C	A	7.996e^-5	0.464	SYNONYMOUS_CODING CG42329
X	16841934	X_16841934_SNP [dm3] X_16947901_SNP [dm6]	T	G	8.028e^-5	0.465	DOWNSTREAM CG13000 INTRON RhoGAP15B	TF binding site BDTNP1_TFBS_dl
2R	11679432	2R_11679432_SNP [dm3] 2R_15791927_SNP [dm6]	G	A	8.105e^-5	0.468	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	15462287	3R_15462287_SNP [dm3] 3R_19636565_SNP [dm6]	C	T	8.132e^-5	0.468	NON_SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
2R	13920115	2R_13920115_SNP [dm3] 2R_18032610_SNP [dm6]	T	A	8.279e^-5	0.475	INTERGENIC
2R	13405958	2R_13405958_SNP [dm3] 2R_17518453_SNP [dm6]	T	G	8.339e^-5	0.475	UPSTREAM APC10 DOWNSTREAM Patronin INTRON CG4866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8512075	2L_8512075_SNP [dm3] 2L_8512075_SNP [dm6]	A	T	8.348e^-5	0.475	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	16580490	3R_16580490_SNP [dm3] 3R_20754768_SNP [dm6]	A	G	8.366e^-5	0.475	INTRON CG42322
2R	11292545	2R_11292545_SNP [dm3] 2R_15405040_SNP [dm6]	G	A	8.412e^-5	0.475	INTRON CG43729 EXON CR45020	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23268180	3R_23268180_SNP [dm3] 3R_27442458_SNP [dm6]	T	A	8.426e^-5	0.475	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	11264129	2R_11264129_SNP [dm3] 2R_15376624_SNP [dm6]	A	C	8.429e^-5	0.475	UTR_3_PRIME dup UPSTREAM CR43105 & 1 other	TF binding site BDTNP1_TFBS_hb
2L	10704163	2L_10704163_SNP [dm3] 2L_10704163_SNP [dm6]	C	A	8.520e^-5	0.477	SYNONYMOUS_CODING CG6415 INTRON Lip2
2R	14784794	2R_14784794_SNP [dm3] 2R_18897289_SNP [dm6]	A	C	8.543e^-5	0.477	INTRON sano
2R	13603019	2R_13603019_SNP [dm3] 2R_17715514_SNP [dm6]	G	C	8.571e^-5	0.477	INTRON CG6424	TF binding site BDTNP1_TFBS_dl
2R	5738550	2R_5738550_SNP [dm3] 2R_9851045_SNP [dm6]	G	A	8.581e^-5	0.477	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
3R	24824602	3R_24824602_SNP [dm3] 3R_28998880_SNP [dm6]	T	C	8.667e^-5	0.477	INTRON wat
2R	13777414	2R_13777414_SNP [dm3] 2R_17889909_SNP [dm6]	C	G	8.743e^-5	0.477	UTR_5_PRIME PPO1 INTRON Elk
2R	14041460	2R_14041460_SNP [dm3] 2R_18153955_SNP [dm6]	G	T	8.743e^-5	0.477	UTR_3_PRIME adp DOWNSTREAM lolal	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15160751	2R_15160751_DEL [dm3] 2R_19273246_DEL [dm6]	GAA	G	8.743e^-5	0.477	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	15160757	2R_15160757_INS [dm3] 2R_19273252_INS [dm6]	C	CC	8.743e^-5	0.477	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	8633964	3L_8633964_SNP [dm3] 3L_8640864_SNP [dm6]	G	A	8.749e^-5	0.477	INTRON Cpr66D
2L	8541841	2L_8541841_SNP [dm3] 2L_8541841_SNP [dm6]	A	G	8.750e^-5	0.477	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8458965	2R_8458965_SNP [dm3] 2R_12571460_SNP [dm6]	C	T	8.787e^-5	0.477	SYNONYMOUS_CODING stil UPSTREAM ClC-b
3L	18037846	3L_18037846_SNP [dm3] 3L_18044746_SNP [dm6]	T	A	8.814e^-5	0.477	DOWNSTREAM CG42393 INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14914304	2L_14914304_SNP [dm3] 2L_14914304_SNP [dm6]	T	G	8.839e^-5	0.477	NON_SYNONYMOUS_CODING CG42313	TF binding site mE1_TFBS_HSA
2R	17084899	2R_17084899_SNP [dm3] 2R_21197394_SNP [dm6]	T	A	8.869e^-5	0.477	INTRON Lapsyn
2L	5389301	2L_5389301_SNP [dm3] 2L_5389301_SNP [dm6]	G	A	8.891e^-5	0.477	DOWNSTREAM CR44745 INTERGENIC
2L	15458164	2L_15458164_SNP [dm3] 2L_15458164_SNP [dm6]	T	G	8.897e^-5	0.477	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4142355	3L_4142355_SNP [dm3] 3L_4142355_SNP [dm6]	T	A	8.940e^-5	0.478	UPSTREAM CG32260 DOWNSTREAM Ras64B & 1 other INTERGENIC
3L	9102964	3L_9102964_SNP [dm3] 3L_9109864_SNP [dm6]	G	A	8.997e^-5	0.479	INTRON bol
2R	11879188	2R_11879188_SNP [dm3] 2R_15991683_SNP [dm6]	G	A	9.069e^-5	0.481	SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	7442946	2L_7442946_SNP [dm3] 2L_7442946_SNP [dm6]	A	G	9.123e^-5	0.481	UPSTREAM CG5973 INTRON CG5973
2L	15454552	2L_15454552_SNP [dm3] 2L_15454552_SNP [dm6]	A	G	9.129e^-5	0.481	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16336629	2R_16336629_SNP [dm3] 2R_20449124_SNP [dm6]	G	C	9.135e^-5	0.481	INTRON CG12484	TF binding site mE1_TFBS_inv
2L	8506609	2L_8506609_SNP [dm3] 2L_8506609_SNP [dm6]	G	A	9.151e^-5	0.481	INTRON Dh31
3R	16528826	3R_16528826_SNP [dm3] 3R_20703104_SNP [dm6]	C	G	9.241e^-5	0.482	INTRON Oamb
2R	15086523	2R_15086523_SNP [dm3] 2R_19199018_SNP [dm6]	G	C	9.247e^-5	0.482	INTRON hppy
2R	15758531	2R_15758531_SNP [dm3] 2R_19871026_SNP [dm6]	A	T	9.259e^-5	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	5738140	2R_5738140_SNP [dm3] 2R_9850635_SNP [dm6]	C	A	9.275e^-5	0.482	UTR_3_PRIME CG1671 DOWNSTREAM CG1516
2L	7210097	2L_7210097_SNP [dm3] 2L_7210097_SNP [dm6]	T	G	9.378e^-5	0.482	INTRON CG13784
2L	8539863	2L_8539863_SNP [dm3] 2L_8539863_SNP [dm6]	C	G	9.417e^-5	0.482	INTRON CG17834
2L	2564623	2L_2564623_SNP [dm3] 2L_2564623_SNP [dm6]	T	C	9.420e^-5	0.482	NON_SYNONYMOUS_CODING Cyp309a1 DOWNSTREAM Cyp309a2
2R	11264106	2R_11264106_SNP [dm3] 2R_15376601_SNP [dm6]	T	C	9.485e^-5	0.482	UPSTREAM CR43105 & 1 other DOWNSTREAM dup INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	4931812	2L_4931812_SNP [dm3] 2L_4931812_SNP [dm6]	T	C	9.486e^-5	0.482	INTRON hoe1
2L	1575452	2L_1575452_SNP [dm3] 2L_1575452_SNP [dm6]	A	G	9.491e^-5	0.482	INTRON haf
2R	13778621	2R_13778621_SNP [dm3] 2R_17891116_SNP [dm6]	C	A	9.523e^-5	0.482	INTRON Elk
3R	19066328	3R_19066328_DEL [dm3] 3R_23240606_DEL [dm6]	CCTC	C	9.558e^-5	0.482	UPSTREAM CG4467 INTRON CG4467
2R	4634615	2R_4634615_SNP [dm3] 2R_8747110_SNP [dm6]	T	C	9.562e^-5	0.482	INTRON CG8740	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12251907	2R_12251907_SNP [dm3] 2R_16364402_SNP [dm6]	T	A	9.625e^-5	0.482	START_GAINED CG15711 UTR_5_PRIME CG15711 UPSTREAM CG15711 DOWNSTREAM CG6262
3R	23269845	3R_23269845_SNP [dm3] 3R_27444123_SNP [dm6]	T	G	9.666e^-5	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	15361948	2R_15361948_SNP [dm3] 2R_19474443_SNP [dm6]	T	C	9.705e^-5	0.482	INTRON par-1
3L	17829565	3L_17829565_SNP [dm3] 3L_17836465_SNP [dm6]	C	T	9.743e^-5	0.482	INTRON Grd
2R	18015420	2R_18015420_SNP [dm3] 2R_22127915_SNP [dm6]	T	C	9.744e^-5	0.482	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D
3R	11993037	3R_11993037_INS [dm3] 3R_16167315_INS [dm6]	A	AAACA	9.744e^-5	0.482	INTRON CG6006
3L	4891182	3L_4891182_SNP [dm3] 3L_4891182_SNP [dm6]	A	T	9.762e^-5	0.482	SYNONYMOUS_CODING CG17150
2R	15205326	2R_15205326_SNP [dm3] 2R_19317821_SNP [dm6]	C	T	9.790e^-5	0.482	INTRON Rgk1
2R	12008608	2R_12008608_SNP [dm3] 2R_16121103_SNP [dm6]	G	A	9.830e^-5	0.482	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3R	19066128	3R_19066128_SNP [dm3] 3R_23240406_SNP [dm6]	T	A	9.830e^-5	0.482	UPSTREAM CG4467 INTRON CG4467
2R	11503981	2R_11503981_SNP [dm3] 2R_15616476_SNP [dm6]	G	A	9.851e^-5	0.482	INTRON CG42524
2R	15205290	2R_15205290_SNP [dm3] 2R_19317785_SNP [dm6]	T	C	9.851e^-5	0.482	INTRON Rgk1
2R	16160717	2R_16160717_SNP [dm3] 2R_20273212_SNP [dm6]	G	A	9.851e^-5	0.482	INTRON CG10444	TF binding site mE1_TFBS_cad
3R	19073587	3R_19073587_SNP [dm3] 3R_23247865_SNP [dm6]	C	T	9.871e^-5	0.482	INTRON CG4467
X	18541368	X_18541368_SNP [dm3] X_18647335_SNP [dm6]	A	T	9.967e^-5	0.486	UTR_5_PRIME Rip11 UPSTREAM CG6540	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	5722750	2R_5722750_SNP [dm3] 2R_9835245_SNP [dm6]	C	A	1.002e^-4	0.486	INTRON hebe	TF binding site mE1_TFBS_HSA
2L	14918059	2L_14918059_SNP [dm3] 2L_14918059_SNP [dm6]	C	T	1.003e^-4	0.486	INTRON CG42313
2R	15205344	2R_15205344_SNP [dm3] 2R_19317839_SNP [dm6]	G	C	1.011e^-4	0.489	INTRON Rgk1
3R	19066119	3R_19066119_SNP [dm3] 3R_23240397_SNP [dm6]	T	C	1.019e^-4	0.49	UPSTREAM CG4467 INTRON CG4467
2R	11850003	2R_11850003_SNP [dm3] 2R_15962498_SNP [dm6]	A	C	1.020e^-4	0.49	NON_SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21429529	3R_21429529_SNP [dm3] 3R_25603807_SNP [dm6]	A	C	1.021e^-4	0.49	UTR_3_PRIME msi INTRON ymp
2L	5389172	2L_5389172_SNP [dm3] 2L_5389172_SNP [dm6]	A	G	1.030e^-4	0.491	DOWNSTREAM CR44745 INTERGENIC
3L	10378368	3L_10378368_SNP [dm3] 3L_10385268_SNP [dm6]	G	A	1.031e^-4	0.491	INTERGENIC
2R	6363554	2R_6363554_SNP [dm3] 2R_10476049_SNP [dm6]	C	A	1.033e^-4	0.491	UPSTREAM whd INTRON whd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12050065	3L_12050065_SNP [dm3] 3L_12056965_SNP [dm6]	C	A	1.034e^-4	0.491	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9697894	3R_9697894_SNP [dm3] 3R_13872172_SNP [dm6]	G	A	1.036e^-4	0.491	INTRON E5
3L	4142796	3L_4142796_SNP [dm3] 3L_4142796_SNP [dm6]	C	T	1.050e^-4	0.494	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3L	4142801	3L_4142801_SNP [dm3] 3L_4142801_SNP [dm6]	G	A	1.050e^-4	0.494	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3R	8050452	3R_8050452_SNP [dm3] 3R_12224730_SNP [dm6]	A	G	1.053e^-4	0.494	SYNONYMOUS_CODING CG17404 UPSTREAM CR43477 DOWNSTREAM CG10014 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16574761	3R_16574761_SNP [dm3] 3R_20749039_SNP [dm6]	C	A	1.060e^-4	0.494	UTR_5_PRIME Prosalpha4T1 INTRON CG42322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14502886	2L_14502886_INS [dm3] 2L_14502886_INS [dm6]	T	TATT	1.061e^-4	0.494	INTERGENIC
3L	17981600	3L_17981600_SNP [dm3] 3L_17988500_SNP [dm6]	T	G	1.068e^-4	0.494	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	17981729	3L_17981729_SNP [dm3] 3L_17988629_SNP [dm6]	T	A	1.068e^-4	0.494	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10704084	2L_10704084_SNP [dm3] 2L_10704084_SNP [dm6]	A	G	1.068e^-4	0.494	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2
2L	3128321	2L_3128321_SNP [dm3] 2L_3128321_SNP [dm6]	C	A	1.071e^-4	0.494	UPSTREAM CG15403 INTRON toc
2L	8529408	2L_8529408_SNP [dm3] 2L_8529408_SNP [dm6]	G	A	1.072e^-4	0.494	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2R	11878211	2R_11878211_SNP [dm3] 2R_15990706_SNP [dm6]	A	G	1.076e^-4	0.494	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5743682	2R_5743682_SNP [dm3] 2R_9856177_SNP [dm6]	G	A	1.077e^-4	0.494	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12195874	3L_12195874_DEL [dm3] 3L_12202774_DEL [dm6]	AGCTA	A	1.080e^-4	0.494	INTRON Adk1
2R	18015452	2R_18015452_SNP [dm3] 2R_22127947_SNP [dm6]	A	G	1.081e^-4	0.494	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad
3R	19066188	3R_19066188_SNP [dm3] 3R_23240466_SNP [dm6]	T	A	1.085e^-4	0.494	UPSTREAM CG4467 INTRON CG4467
3L	12050085	3L_12050085_SNP [dm3] 3L_12056985_SNP [dm6]	G	A	1.086e^-4	0.494	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15676669	2R_15676669_SNP [dm3] 2R_19789164_SNP [dm6]	T	C	1.097e^-4	0.495	EXON CR45231
2L	4622984	2L_4622984_SNP [dm3] 2L_4622984_SNP [dm6]	C	T	1.098e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3785360	2R_3785360_SNP [dm3] 2R_7897855_SNP [dm6]	G	A	1.099e^-4	0.495	INTRON CG30377
2L	10703661	2L_10703661_SNP [dm3] 2L_10703661_SNP [dm6]	G	A	1.099e^-4	0.495	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
2L	18893458	2L_18893458_SNP [dm3] 2L_18893458_SNP [dm6]	A	C	1.100e^-4	0.495	UPSTREAM CR44737 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26588949	3R_26588949_SNP [dm3] 3R_30763227_SNP [dm6]	G	A	1.103e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	5718615	2R_5718615_SNP [dm3] 2R_9831110_SNP [dm6]	G	C	1.110e^-4	0.497	INTRON hebe
3R	15461899	3R_15461899_SNP [dm3] 3R_19636177_SNP [dm6]	C	A	1.117e^-4	0.499	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3L	4144161	3L_4144161_SNP [dm3] 3L_4144161_SNP [dm6]	A	G	1.122e^-4	0.5	INTRON CG32260
3R	22790989	3R_22790989_SNP [dm3] 3R_26965267_SNP [dm6]	C	A	1.124e^-4	0.5	NON_SYNONYMOUS_CODING Gr97a UPSTREAM Tsp97E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	5038210	2L_5038210_SNP [dm3] 2L_5038210_SNP [dm6]	G	A	1.132e^-4	0.501	NON_SYNONYMOUS_CODING CG14042 UTR_5_PRIME SP555 UPSTREAM SP555 DOWNSTREAM Cg25C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	12252148	2R_12252148_SNP [dm3] 2R_16364643_SNP [dm6]	C	T	1.135e^-4	0.501	UTR_5_PRIME CG15711 UPSTREAM CG15711
2L	10713162	2L_10713162_SNP [dm3] 2L_10713162_SNP [dm6]	A	G	1.136e^-4	0.501	INTERGENIC
3L	18025519	3L_18025519_SNP [dm3] 3L_18032419_SNP [dm6]	A	T	1.146e^-4	0.504	INTRON Eip75B
2L	3505633	2L_3505633_SNP [dm3] 2L_3505633_SNP [dm6]	T	G	1.151e^-4	0.504	INTRON tim	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	5757237	X_5757237_SNP [dm3] X_5863204_SNP [dm6]	C	T	1.153e^-4	0.504	INTERGENIC
2L	1033736	2L_1033736_SNP [dm3] 2L_1033736_SNP [dm6]	G	A	1.154e^-4	0.504	SYNONYMOUS_CODING IA-2
3L	2509145	3L_2509145_SNP [dm3] 3L_2509145_SNP [dm6]	A	T	1.155e^-4	0.504	INTRON Spn
3R	20568859	3R_20568859_SNP [dm3] 3R_24743137_SNP [dm6]	T	G	1.157e^-4	0.504	INTRON tok
3L	18020832	3L_18020832_SNP [dm3] 3L_18027732_SNP [dm6]	T	A	1.169e^-4	0.507	INTRON Eip75B
2L	18622620	2L_18622620_SNP [dm3] 2L_18622620_SNP [dm6]	C	T	1.178e^-4	0.509	INTRON MESR3
2L	8539826	2L_8539826_SNP [dm3] 2L_8539826_SNP [dm6]	T	G	1.181e^-4	0.509	INTRON CG17834
2L	8533459	2L_8533459_SNP [dm3] 2L_8533459_SNP [dm6]	A	G	1.182e^-4	0.509	INTRON CG17834	TF binding site mE1_TFBS_cad
3R	14102939	3R_14102939_SNP [dm3] 3R_18277217_SNP [dm6]	A	T	1.183e^-4	0.509	DOWNSTREAM CG7142 INTRON eIF-1A
2L	2042021	2L_2042021_SNP [dm3] 2L_2042021_SNP [dm6]	C	A	1.190e^-4	0.51	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2043515	2L_2043515_SNP [dm3] 2L_2043515_SNP [dm6]	T	C	1.190e^-4	0.51	UTR_3_PRIME Su_dx_
2L	1228611	2L_1228611_SNP [dm3] 2L_1228611_SNP [dm6]	C	T	1.193e^-4	0.51	SYNONYMOUS_CODING CG42329
2L	13057901	2L_13057901_SNP [dm3] 2L_13057901_SNP [dm6]	C	A	1.201e^-4	0.512	INTRON CG9932
2R	5732318	2R_5732318_SNP [dm3] 2R_9844813_SNP [dm6]	A	G	1.206e^-4	0.512	SYNONYMOUS_CODING CG1667 DOWNSTREAM Orc6
3L	12050039	3L_12050039_INS [dm3] 3L_12056939_INS [dm6]	TT	AAG	1.206e^-4	0.512	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	983943	2R_983943_SNP [dm3] 2R_5096438_SNP [dm6]	C	A	1.209e^-4	0.512	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2L	4622875	2L_4622875_SNP [dm3] 2L_4622875_SNP [dm6]	C	T	1.216e^-4	0.514	INTERGENIC
X	18536977	X_18536977_SNP [dm3] X_18642944_SNP [dm6]	C	T	1.223e^-4	0.516	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12050013	3L_12050013_SNP [dm3] 3L_12056913_SNP [dm6]	C	T	1.244e^-4	0.522	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15461979	3R_15461979_MNP [dm3] 3R_19636257_MNP [dm6]	ACC	GTT	1.249e^-4	0.522	DOWNSTREAM CG34138 INTRON subdued
2R	5715049	2R_5715049_SNP [dm3] 2R_9827544_SNP [dm6]	G	C	1.251e^-4	0.522	UPSTREAM dila DOWNSTREAM hebe INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	12443070	2R_12443070_SNP [dm3] 2R_16555565_SNP [dm6]	T	A	1.252e^-4	0.522	INTRON Syn2
2L	15458230	2L_15458230_SNP [dm3] 2L_15458230_SNP [dm6]	G	C	1.254e^-4	0.522	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12429663	2L_12429663_SNP [dm3] 2L_12429663_SNP [dm6]	G	A	1.254e^-4	0.522	SYNONYMOUS_CODING CG6388 DOWNSTREAM CG5435	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8458808	2R_8458808_SNP [dm3] 2R_12571303_SNP [dm6]	T	A	1.265e^-4	0.524	UPSTREAM ClC-b INTRON stil
2L	7140774	2L_7140774_SNP [dm3] 2L_7140774_SNP [dm6]	G	C	1.266e^-4	0.524	INTRON Pvf3
2R	3776245	2R_3776245_SNP [dm3] 2R_7888740_SNP [dm6]	A	G	1.271e^-4	0.525	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12050003	3L_12050003_SNP [dm3] 3L_12056903_SNP [dm6]	T	A	1.278e^-4	0.527	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	811923	3L_811923_SNP [dm3] 3L_811923_SNP [dm6]	G	C	1.280e^-4	0.527	INTERGENIC
X	18538006	X_18538006_SNP [dm3] X_18643973_SNP [dm6]	G	A	1.287e^-4	0.528	INTRON Rip11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14781582	3L_14781582_SNP [dm3] 3L_14788482_SNP [dm6]	C	T	1.298e^-4	0.531	NON_SYNONYMOUS_CODING Tdrd3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19066073	3R_19066073_SNP [dm3] 3R_23240351_SNP [dm6]	T	C	1.308e^-4	0.535	UPSTREAM CG4467 INTRON CG4467
2R	5720380	2R_5720380_SNP [dm3] 2R_9832875_SNP [dm6]	G	T	1.325e^-4	0.54	INTRON hebe
3L	17828852	3L_17828852_SNP [dm3] 3L_17835752_SNP [dm6]	G	A	1.336e^-4	0.543	UPSTREAM CG32189 INTRON Grd
2L	3084548	2L_3084548_SNP [dm3] 2L_3084548_SNP [dm6]	G	A	1.341e^-4	0.543	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11136069	2R_11136069_DEL [dm3] 2R_15248564_DEL [dm6]	TA	T	1.352e^-4	0.543	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	19093873	X_19093873_INS [dm3] X_19199840_INS [dm6]	G	GGG	1.353e^-4	0.543	UTR_3_PRIME CG7990 INTRON CG7990
2L	13168784	2L_13168784_SNP [dm3] 2L_13168784_SNP [dm6]	G	A	1.355e^-4	0.543	UTR_3_PRIME Sir2 DOWNSTREAM Sfmbt
2L	15567605	2L_15567605_SNP [dm3] 2L_15567605_SNP [dm6]	G	T	1.355e^-4	0.543	INTRON kek3
2L	19215970	2L_19215970_SNP [dm3] 2L_19215970_SNP [dm6]	G	C	1.355e^-4	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3766591	3L_3766591_SNP [dm3] 3L_3766591_SNP [dm6]	G	A	1.358e^-4	0.543	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26086315	3R_26086315_SNP [dm3] 3R_30260593_SNP [dm6]	C	T	1.358e^-4	0.543	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	8701364	2R_8701364_SNP [dm3] 2R_12813859_SNP [dm6]	A	G	1.368e^-4	0.546	INTERGENIC
3R	20013894	3R_20013894_SNP [dm3] 3R_24188172_SNP [dm6]	T	C	1.370e^-4	0.546	SYNONYMOUS_CODING CG5515 DOWNSTREAM CHORD & 1 other	TF binding site mE1_TFBS_sens
2L	8510992	2L_8510992_SNP [dm3] 2L_8510992_SNP [dm6]	G	T	1.376e^-4	0.547	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15983331	2R_15983331_SNP [dm3] 2R_20095826_SNP [dm6]	G	A	1.384e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5711817	2R_5711817_SNP [dm3] 2R_9824312_SNP [dm6]	T	C	1.388e^-4	0.548	INTRON dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19066690	3R_19066690_SNP [dm3] 3R_23240968_SNP [dm6]	G	A	1.391e^-4	0.548	UPSTREAM CG4467 INTRON CG4467
2R	13681294	2R_13681294_SNP [dm3] 2R_17793789_SNP [dm6]	T	C	1.393e^-4	0.548	UTR_5_PRIME Dhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17686354	X_17686354_DEL [dm3] X_17792321_DEL [dm6]	AGACAAGGTA	A	1.395e^-4	0.548	INTRON OdsH
3R	19073555	3R_19073555_INS [dm3] 3R_23247833_INS [dm6]	A	AC	1.396e^-4	0.548	INTRON CG4467
2R	12479002	2R_12479002_DEL [dm3] 2R_16591497_DEL [dm6]	AAA	A	1.409e^-4	0.552	INTRON CG8306	TF binding site mE1_TFBS_sens
2R	15397471	2R_15397471_SNP [dm3] 2R_19509966_SNP [dm6]	A	C	1.419e^-4	0.554	SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
3R	19066316	3R_19066316_DEL [dm3] 3R_23240594_DEL [dm6]	CC	C	1.421e^-4	0.554	UPSTREAM CG4467 INTRON CG4467
2R	11795380	2R_11795380_SNP [dm3] 2R_15907875_SNP [dm6]	A	C	1.428e^-4	0.556	INTRON sli
2R	9734774	2R_9734774_SNP [dm3] 2R_13847269_SNP [dm6]	G	A	1.435e^-4	0.556	SYNONYMOUS_CODING CG30484
2R	13870327	2R_13870327_SNP [dm3] 2R_17982822_SNP [dm6]	A	G	1.439e^-4	0.556	INTRON dpr13
2L	7443026	2L_7443026_SNP [dm3] 2L_7443026_SNP [dm6]	C	T	1.444e^-4	0.556	UPSTREAM CG5973 INTRON CG5973
3L	12050010	3L_12050010_SNP [dm3] 3L_12056910_SNP [dm6]	A	C	1.444e^-4	0.556	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12050072	3L_12050072_SNP [dm3] 3L_12056972_SNP [dm6]	T	C	1.444e^-4	0.556	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19920244	3R_19920244_SNP [dm3] 3R_24094522_SNP [dm6]	T	C	1.452e^-4	0.557	INTRON 4EHP
2R	16062350	2R_16062350_SNP [dm3] 2R_20174845_SNP [dm6]	T	C	1.455e^-4	0.557	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11330866	2R_11330866_DEL [dm3] 2R_15443361_DEL [dm6]	ATG	A	1.456e^-4	0.557	INTRON CG43729
2L	1228539	2L_1228539_SNP [dm3] 2L_1228539_SNP [dm6]	T	C	1.457e^-4	0.557	SYNONYMOUS_CODING CG42329
3R	23268228	3R_23268228_SNP [dm3] 3R_27442506_SNP [dm6]	G	A	1.471e^-4	0.558	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	14905688	2L_14905688_SNP [dm3] 2L_14905688_SNP [dm6]	G	C	1.472e^-4	0.558	INTERGENIC
2R	8351152	2R_8351152_SNP [dm3] 2R_12463647_SNP [dm6]	C	G	1.474e^-4	0.558	INTRON Lac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	15461974	3R_15461974_SNP [dm3] 3R_19636252_SNP [dm6]	A	T	1.475e^-4	0.558	DOWNSTREAM CG34138 INTRON subdued
2L	776303	2L_776303_SNP [dm3] 2L_776303_SNP [dm6]	C	A	1.479e^-4	0.558	UPSTREAM CG13946 INTERGENIC
X	5698584	X_5698584_INS [dm3] X_5804551_INS [dm6]	G	GCTTTTGG	1.480e^-4	0.558	UPSTREAM Cpr5C INTERGENIC
3L	8633969	3L_8633969_SNP [dm3] 3L_8640869_SNP [dm6]	A	T	1.480e^-4	0.558	INTRON Cpr66D
3R	21646854	3R_21646854_SNP [dm3] 3R_25821132_SNP [dm6]	C	A	1.485e^-4	0.558	INTERGENIC
2R	5708056	2R_5708056_SNP [dm3] 2R_9820551_SNP [dm6]	T	A	1.496e^-4	0.56	UPSTREAM CG34033 & 1 other DOWNSTREAM CG30001 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	5707913	2R_5707913_INS [dm3] 2R_9820408_INS [dm6]	T	TTCATCAT	1.499e^-4	0.56	UPSTREAM CG34033 & 1 other DOWNSTREAM CG30001 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	14905746	2L_14905746_SNP [dm3] 2L_14905746_SNP [dm6]	T	A	1.499e^-4	0.56	INTERGENIC
3R	22249607	3R_22249607_SNP [dm3] 3R_26423885_SNP [dm6]	G	A	1.501e^-4	0.56	DOWNSTREAM CG6503 INTERGENIC
2R	11750945	2R_11750945_SNP [dm3] 2R_15863440_SNP [dm6]	A	C	1.505e^-4	0.56	UPSTREAM Gpo-1 DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11878273	2R_11878273_SNP [dm3] 2R_15990768_SNP [dm6]	A	T	1.514e^-4	0.561	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5718677	2R_5718677_SNP [dm3] 2R_9831172_SNP [dm6]	C	A	1.517e^-4	0.561	INTRON hebe
3R	12204991	3R_12204991_SNP [dm3] 3R_16379269_SNP [dm6]	C	T	1.519e^-4	0.561	INTRON ss
2R	5862376	2R_5862376_SNP [dm3] 2R_9974871_SNP [dm6]	T	C	1.520e^-4	0.561	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14294812	3L_14294812_SNP [dm3] 3L_14301712_SNP [dm6]	T	A	1.528e^-4	0.563	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11264245	2R_11264245_SNP [dm3] 2R_15376740_SNP [dm6]	T	A	1.532e^-4	0.563	UTR_3_PRIME dup UPSTREAM CR43186	TF binding site mE1_TFBS_cad
X	15327399	X_15327399_SNP [dm3] X_15433366_SNP [dm6]	C	A	1.533e^-4	0.563	INTRON Cngl	transposable element FlyBase
2R	18637935	2R_18637935_SNP [dm3] 2R_22750430_SNP [dm6]	G	T	1.542e^-4	0.563	INTRON CG42260	TF binding site mE1_TFBS_inv
3R	25346411	3R_25346411_SNP [dm3] 3R_29520689_SNP [dm6]	A	C	1.544e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9571826	2L_9571826_SNP [dm3] 2L_9571826_SNP [dm6]	A	G	1.546e^-4	0.563	INTRON CG3838
3L	12630119	3L_12630119_SNP [dm3] 3L_12637019_SNP [dm6]	G	A	1.550e^-4	0.563	INTRON CR32111
2R	8461349	2R_8461349_SNP [dm3] 2R_12573844_SNP [dm6]	C	A	1.552e^-4	0.563	SYNONYMOUS_CODING ClC-b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10910706	2L_10910706_SNP [dm3] 2L_10910706_SNP [dm6]	C	T	1.553e^-4	0.563	UPSTREAM CG14069 INTERGENIC
3L	17982336	3L_17982336_SNP [dm3] 3L_17989236_SNP [dm6]	C	T	1.560e^-4	0.565	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	13917759	2R_13917759_SNP [dm3] 2R_18030254_SNP [dm6]	A	T	1.562e^-4	0.565	INTERGENIC
3L	17981894	3L_17981894_SNP [dm3] 3L_17988794_SNP [dm6]	G	A	1.587e^-4	0.571	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1657683	2L_1657683_SNP [dm3] 2L_1657683_SNP [dm6]	C	T	1.588e^-4	0.571	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
2L	2081346	2L_2081346_DEL [dm3] 2L_2081346_DEL [dm6]	AAAAA	TGT	1.591e^-4	0.571	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3
3R	9725538	3R_9725538_SNP [dm3] 3R_13899816_SNP [dm6]	C	A	1.593e^-4	0.571	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	1235435	2L_1235435_SNP [dm3] 2L_1235435_SNP [dm6]	C	G	1.608e^-4	0.576	INTERGENIC
3L	4688180	3L_4688180_SNP [dm3] 3L_4688180_SNP [dm6]	G	T	1.615e^-4	0.577	SYNONYMOUS_CODING CG7514 UPSTREAM axo DOWNSTREAM CG18418	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14708808	3L_14708808_SNP [dm3] 3L_14715708_SNP [dm6]	T	A	1.622e^-4	0.578	INTRON ome
2L	5516710	2L_5516710_SNP [dm3] 2L_5516710_SNP [dm6]	T	G	1.625e^-4	0.578	INTERGENIC
3R	9649463	3R_9649463_INS [dm3] 3R_13823741_INS [dm6]	T	TGTACCAAGT	1.631e^-4	0.579	INTERGENIC
2L	8325110	2L_8325110_SNP [dm3] 2L_8325110_SNP [dm6]	G	T	1.634e^-4	0.579	UTR_5_PRIME CG7781
2R	11879824	2R_11879824_SNP [dm3] 2R_15992319_SNP [dm6]	T	G	1.637e^-4	0.579	UTR_5_PRIME Pex11 UPSTREAM CG8320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	13867788	2R_13867788_SNP [dm3] 2R_17980283_SNP [dm6]	A	T	1.644e^-4	0.579	INTRON dpr13
2R	13867801	2R_13867801_SNP [dm3] 2R_17980296_SNP [dm6]	A	C	1.644e^-4	0.579	INTRON dpr13
2R	12231191	2R_12231191_SNP [dm3] 2R_16343686_SNP [dm6]	T	A	1.645e^-4	0.579	UPSTREAM Nup62 & 1 other INTRON CG7997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14905769	2L_14905769_SNP [dm3] 2L_14905769_SNP [dm6]	G	A	1.658e^-4	0.58	INTERGENIC
2L	8539845	2L_8539845_SNP [dm3] 2L_8539845_SNP [dm6]	A	C	1.661e^-4	0.58	INTRON CG17834
2L	3093771	2L_3093771_SNP [dm3] 2L_3093771_SNP [dm6]	A	T	1.662e^-4	0.58	INTRON toc
3R	19066627	3R_19066627_SNP [dm3] 3R_23240905_SNP [dm6]	G	A	1.662e^-4	0.58	UPSTREAM CG4467 INTRON CG4467
2R	15885873	2R_15885873_SNP [dm3] 2R_19998368_SNP [dm6]	A	G	1.663e^-4	0.58	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23249334	3R_23249334_SNP [dm3] 3R_27423612_SNP [dm6]	G	T	1.668e^-4	0.58	INTRON side
2R	5777540	2R_5777540_SNP [dm3] 2R_9890035_SNP [dm6]	T	C	1.670e^-4	0.58	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
X	18547548	X_18547548_SNP [dm3] X_18653515_SNP [dm6]	T	C	1.673e^-4	0.58	UTR_3_PRIME CG6659 UPSTREAM Ing3	TF binding site BDTNP1_TFBS_dl
3L	3766825	3L_3766825_DEL [dm3] 3L_3766825_DEL [dm6]	TT	T	1.687e^-4	0.582	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	12052465	3L_12052465_SNP [dm3] 3L_12059365_SNP [dm6]	A	G	1.689e^-4	0.582	INTRON rols
3L	5288122	3L_5288122_SNP [dm3] 3L_5295022_SNP [dm6]	T	G	1.690e^-4	0.582	INTERGENIC
2L	12573175	2L_12573175_SNP [dm3] 2L_12573175_SNP [dm6]	A	G	1.691e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19342897	2R_19342897_SNP [dm3] 2R_23455374_SNP [dm6]	C	T	1.699e^-4	0.583	INTRON CG43795
3R	19066621	3R_19066621_SNP [dm3] 3R_23240899_SNP [dm6]	A	T	1.699e^-4	0.583	UPSTREAM CG4467 INTRON CG4467
2L	8506084	2L_8506084_SNP [dm3] 2L_8506084_SNP [dm6]	A	T	1.702e^-4	0.583	INTRON Dh31
2R	11136113	2R_11136113_SNP [dm3] 2R_15248608_SNP [dm6]	A	T	1.706e^-4	0.583	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	2043559	2L_2043559_SNP [dm3] 2L_2043559_SNP [dm6]	G	T	1.713e^-4	0.584	UTR_3_PRIME Su_dx_ DOWNSTREAM CR45298
3L	10377566	3L_10377566_SNP [dm3] 3L_10384466_SNP [dm6]	A	C	1.717e^-4	0.585	INTERGENIC
3R	5216594	3R_5216594_SNP [dm3] 3R_9390872_SNP [dm6]	A	G	1.721e^-4	0.585	INTRON FER
2R	5731932	2R_5731932_SNP [dm3] 2R_9844427_SNP [dm6]	T	C	1.730e^-4	0.587	INTRON CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	11750962	2R_11750962_SNP [dm3] 2R_15863457_SNP [dm6]	T	C	1.733e^-4	0.587	UPSTREAM Gpo-1 DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8474287	2R_8474287_SNP [dm3] 2R_12586782_SNP [dm6]	T	A	1.750e^-4	0.589	INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8477580	2R_8477580_SNP [dm3] 2R_12590075_SNP [dm6]	T	A	1.750e^-4	0.589	UPSTREAM Sin3A INTRON Sin3A EXON CR30055	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8477583	2R_8477583_SNP [dm3] 2R_12590078_SNP [dm6]	C	A	1.750e^-4	0.589	UPSTREAM Sin3A INTRON Sin3A EXON CR30055	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	1094500	2R_1094500_SNP [dm3] 2R_5206995_SNP [dm6]	T	G	1.756e^-4	0.59	INTRON Nipped-A	transposable element FlyBase
2L	1643350	2L_1643350_SNP [dm3] 2L_1643350_SNP [dm6]	T	A	1.758e^-4	0.59	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25315932	3R_25315932_SNP [dm3] 3R_29490210_SNP [dm6]	A	G	1.760e^-4	0.59	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17158006	3R_17158006_SNP [dm3] 3R_21332284_SNP [dm6]	C	T	1.766e^-4	0.59	INTRON CG16791	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18386073	2L_18386073_SNP [dm3] 2L_18386073_SNP [dm6]	T	C	1.773e^-4	0.592	INTRON Fas3
3R	23003839	3R_23003839_SNP [dm3] 3R_27178117_SNP [dm6]	C	G	1.780e^-4	0.593	INTRON Ser
2R	10746457	2R_10746457_SNP [dm3] 2R_14858952_SNP [dm6]	G	A	1.803e^-4	0.598	UTR_3_PRIME U3-55K UPSTREAM CG33506	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	2438169	3L_2438169_MNP [dm3] 3L_2438169_MNP [dm6]	ACG	TTC	1.804e^-4	0.598	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	18541040	X_18541040_SNP [dm3] X_18647007_SNP [dm6]	G	C	1.806e^-4	0.598	INTRON Rip11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5732741	2R_5732741_SNP [dm3] 2R_9845236_SNP [dm6]	A	T	1.807e^-4	0.598	DOWNSTREAM Orc6 INTRON CG1667
2R	11277521	2R_11277521_SNP [dm3] 2R_15390016_SNP [dm6]	A	G	1.813e^-4	0.599	INTERGENIC
2R	3785393	2R_3785393_SNP [dm3] 2R_7897888_SNP [dm6]	G	C	1.821e^-4	0.599	INTRON CG30377
2R	20145229	2R_20145229_SNP [dm3] 2R_24257706_SNP [dm6]	G	A	1.824e^-4	0.599	UPSTREAM CG3376 DOWNSTREAM CG13575 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	1228536	2L_1228536_SNP [dm3] 2L_1228536_SNP [dm6]	C	T	1.825e^-4	0.599	SYNONYMOUS_CODING CG42329
3R	26588967	3R_26588967_SNP [dm3] 3R_30763245_SNP [dm6]	C	G	1.828e^-4	0.6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	16405290	2R_16405290_SNP [dm3] 2R_20517785_SNP [dm6]	T	C	1.840e^-4	0.602	INTERGENIC
2R	13867810	2R_13867810_SNP [dm3] 2R_17980305_SNP [dm6]	T	C	1.845e^-4	0.602	INTRON dpr13
3R	16726316	3R_16726316_SNP [dm3] 3R_20900594_SNP [dm6]	C	T	1.847e^-4	0.602	INTERGENIC
2R	5716235	2R_5716235_SNP [dm3] 2R_9828730_SNP [dm6]	A	G	1.857e^-4	0.602	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad
2R	11976657	2R_11976657_SNP [dm3] 2R_16089152_SNP [dm6]	C	T	1.858e^-4	0.602	SYNONYMOUS_CODING Dg
2L	8531546	2L_8531546_SNP [dm3] 2L_8531546_SNP [dm6]	G	A	1.859e^-4	0.602	INTRON CG17834
2R	13547629	2R_13547629_SNP [dm3] 2R_17660124_SNP [dm6]	T	C	1.865e^-4	0.602	INTRON CCHa1-R
3L	9412857	3L_9412857_DEL [dm3] 3L_9419757_DEL [dm6]	GATATGG	G	1.870e^-4	0.602	UPSTREAM CG3967 INTRON CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8474197	2R_8474197_SNP [dm3] 2R_12586692_SNP [dm6]	C	T	1.870e^-4	0.602	INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4915900	2L_4915900_SNP [dm3] 2L_4915900_SNP [dm6]	A	T	1.871e^-4	0.602	UPSTREAM hoe1 INTRON hoe1
2L	4915920	2L_4915920_SNP [dm3] 2L_4915920_SNP [dm6]	T	C	1.871e^-4	0.602	UPSTREAM hoe1 INTRON hoe1
2L	7443037	2L_7443037_SNP [dm3] 2L_7443037_SNP [dm6]	C	A	1.874e^-4	0.602	UPSTREAM CG5973 INTRON CG5973
2R	5742476	2R_5742476_SNP [dm3] 2R_9854971_SNP [dm6]	T	C	1.878e^-4	0.602	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19207516	2L_19207516_SNP [dm3] 2L_19207516_SNP [dm6]	A	C	1.880e^-4	0.602	INTRON drl
2R	6568572	2R_6568572_SNP [dm3] 2R_10681067_SNP [dm6]	C	A	1.889e^-4	0.604	INTRON stan	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2L	18385930	2L_18385930_SNP [dm3] 2L_18385930_SNP [dm6]	G	A	1.897e^-4	0.605	INTRON Fas3
2R	14140238	2R_14140238_SNP [dm3] 2R_18252733_SNP [dm6]	A	G	1.909e^-4	0.607	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2644388	2L_2644388_SNP [dm3] 2L_2644388_SNP [dm6]	T	C	1.909e^-4	0.607	INTERGENIC
3L	8911683	3L_8911683_SNP [dm3] 3L_8918583_SNP [dm6]	T	C	1.911e^-4	0.607	INTRON Tsp66E
3L	12195855	3L_12195855_SNP [dm3] 3L_12202755_SNP [dm6]	C	T	1.916e^-4	0.607	INTRON Adk1
2L	10032454	2L_10032454_SNP [dm3] 2L_10032454_SNP [dm6]	G	A	1.918e^-4	0.607	UPSTREAM obst-B INTERGENIC	TF binding site mE1_TFBS_Trl
3L	17983920	3L_17983920_SNP [dm3] 3L_17990820_SNP [dm6]	A	T	1.921e^-4	0.607	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	21956150	3R_21956150_DEL [dm3] 3R_26130428_DEL [dm6]	AATAC	A	1.924e^-4	0.607	UTR_3_PRIME CG31324 DOWNSTREAM CG31324
3R	23277491	3R_23277491_SNP [dm3] 3R_27451769_SNP [dm6]	G	T	1.928e^-4	0.607	INTERGENIC
2R	5736819	2R_5736819_SNP [dm3] 2R_9849314_SNP [dm6]	G	A	1.931e^-4	0.607	SYNONYMOUS_CODING CG1671	TF binding site mE1_TFBS_sens
2R	5755314	2R_5755314_SNP [dm3] 2R_9867809_SNP [dm6]	A	G	1.937e^-4	0.607	UPSTREAM CR45138 INTRON cbx
3L	12050022	3L_12050022_SNP [dm3] 3L_12056922_SNP [dm6]	T	G	1.940e^-4	0.607	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12523322	2R_12523322_SNP [dm3] 2R_16635817_SNP [dm6]	C	T	1.946e^-4	0.608	INTRON Alk	TF binding site BDTNP1_TFBS_dl
2L	13193426	2L_13193426_SNP [dm3] 2L_13193426_SNP [dm6]	G	T	1.955e^-4	0.61	INTRON Edem2	TF binding site mE1_TFBS_cad
2L	15454551	2L_15454551_SNP [dm3] 2L_15454551_SNP [dm6]	T	A	1.964e^-4	0.612	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1746146	2L_1746146_SNP [dm3] 2L_1746146_SNP [dm6]	C	A	1.970e^-4	0.613	INTRON CG17646
3R	23673628	3R_23673628_SNP [dm3] 3R_27847906_SNP [dm6]	C	T	1.977e^-4	0.613	DOWNSTREAM Or98a INTRON CG34353
2L	19215034	2L_19215034_SNP [dm3] 2L_19215034_SNP [dm6]	C	A	1.979e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3791180	2L_3791180_SNP [dm3] 2L_3791180_SNP [dm6]	T	C	1.980e^-4	0.613	INTRON CG3921
2L	1643510	2L_1643510_SNP [dm3] 2L_1643510_SNP [dm6]	T	A	1.994e^-4	0.615	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3351431	2R_3351431_SNP [dm3] 2R_7463926_SNP [dm6]	T	C	1.999e^-4	0.615	SYNONYMOUS_CODING CG11127 UPSTREAM CG11141	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	2893660	2L_2893660_SNP [dm3] 2L_2893660_SNP [dm6]	A	G	1.999e^-4	0.615	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5004720	X_5004720_SNP [dm3] X_5110687_SNP [dm6]	G	A	2.002e^-4	0.615	INTRON rg & 1 other
2R	15995686	2R_15995686_SNP [dm3] 2R_20108181_SNP [dm6]	T	C	2.003e^-4	0.615	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5705243	2R_5705243_SNP [dm3] 2R_9817738_SNP [dm6]	T	C	2.011e^-4	0.616	SYNONYMOUS_CODING lectin-46Ca INTRON CG1648
3L	12050021	3L_12050021_SNP [dm3] 3L_12056921_SNP [dm6]	T	C	2.022e^-4	0.618	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1219819	2L_1219819_SNP [dm3] 2L_1219819_SNP [dm6]	A	T	2.024e^-4	0.618	NON_SYNONYMOUS_CODING CG42329	TF binding site mE1_TFBS_cad
2R	9756529	2R_9756529_SNP [dm3] 2R_13869024_SNP [dm6]	C	G	2.040e^-4	0.622	INTRON shot
2L	9098562	2L_9098562_SNP [dm3] 2L_9098562_SNP [dm6]	C	A	2.049e^-4	0.624	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
3R	26387812	3R_26387812_SNP [dm3] 3R_30562090_SNP [dm6]	C	T	2.057e^-4	0.625	INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	12050043	3L_12050043_SNP [dm3] 3L_12056943_SNP [dm6]	C	G	2.063e^-4	0.626	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5733928	2R_5733928_SNP [dm3] 2R_9846423_SNP [dm6]	C	A	2.074e^-4	0.629	START_GAINED Orc6 UTR_5_PRIME Orc6 DOWNSTREAM CG1667 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
2R	10201968	2R_10201968_SNP [dm3] 2R_14314463_SNP [dm6]	G	A	2.083e^-4	0.63	INTRON Shroom	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	5733815	2R_5733815_SNP [dm3] 2R_9846310_SNP [dm6]	A	C	2.094e^-4	0.632	DOWNSTREAM CG1667 & 1 other INTRON Orc6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	13466615	3R_13466615_SNP [dm3] 3R_17640893_SNP [dm6]	T	A	2.095e^-4	0.632	INTRON CG43175
X	18536874	X_18536874_SNP [dm3] X_18642841_SNP [dm6]	G	T	2.100e^-4	0.632	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26388569	3R_26388569_SNP [dm3] 3R_30562847_SNP [dm6]	T	A	2.103e^-4	0.632	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8507338	2L_8507338_SNP [dm3] 2L_8507338_SNP [dm6]	G	C	2.108e^-4	0.633	UPSTREAM Dh31 INTERGENIC
3R	24304641	3R_24304641_SNP [dm3] 3R_28478919_SNP [dm6]	T	A	2.126e^-4	0.637	INTERGENIC
2R	13920091	2R_13920091_SNP [dm3] 2R_18032586_SNP [dm6]	T	A	2.133e^-4	0.638	INTERGENIC
2L	9465709	2L_9465709_SNP [dm3] 2L_9465709_SNP [dm6]	A	G	2.144e^-4	0.639	INTERGENIC
2R	5785899	2R_5785899_SNP [dm3] 2R_9898394_SNP [dm6]	A	C	2.146e^-4	0.639	NON_SYNONYMOUS_CODING CG30007 DOWNSTREAM CG1441 & 1 other
2R	14054745	2R_14054745_SNP [dm3] 2R_18167240_SNP [dm6]	G	A	2.149e^-4	0.639	UTR_5_PRIME CG42518 UPSTREAM CG42518 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8507887	2L_8507887_SNP [dm3] 2L_8507887_SNP [dm6]	G	T	2.151e^-4	0.639	INTERGENIC
3R	26853556	3R_26853556_DEL [dm3] 3R_31027834_DEL [dm6]	AA	A	2.161e^-4	0.64	INTERGENIC
2R	7666707	2R_7666707_INS [dm3] 2R_11779202_INS [dm6]	T	TT	2.165e^-4	0.64	UTR_3_PRIME CG42493 INTRON ths
2R	14720973	2R_14720973_SNP [dm3] 2R_18833468_SNP [dm6]	A	T	2.172e^-4	0.64	UTR_3_PRIME CG15098 DOWNSTREAM CG15082
3L	10233053	3L_10233053_SNP [dm3] 3L_10239953_SNP [dm6]	C	T	2.177e^-4	0.64	UPSTREAM CR45403 INTERGENIC
2R	5719783	2R_5719783_SNP [dm3] 2R_9832278_SNP [dm6]	A	T	2.179e^-4	0.64	UPSTREAM hebe INTRON hebe
2R	14606992	2R_14606992_SNP [dm3] 2R_18719487_SNP [dm6]	G	A	2.180e^-4	0.64	UPSTREAM mir-4982 INTRON Hs3st-A
2R	11330693	2R_11330693_SNP [dm3] 2R_15443188_SNP [dm6]	C	A	2.180e^-4	0.64	INTRON CG43729
3L	2072668	3L_2072668_SNP [dm3] 3L_2072668_SNP [dm6]	A	T	2.184e^-4	0.64	NON_SYNONYMOUS_CODING sls INTRON sls
2L	19207519	2L_19207519_SNP [dm3] 2L_19207519_SNP [dm6]	G	T	2.185e^-4	0.64	INTRON drl
3R	14900144	3R_14900144_SNP [dm3] 3R_19074422_SNP [dm6]	T	G	2.187e^-4	0.64	INTRON cdi
3L	12050047	3L_12050047_SNP [dm3] 3L_12056947_SNP [dm6]	G	C	2.196e^-4	0.641	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3297710	2L_3297710_SNP [dm3] 2L_3297710_SNP [dm6]	C	A	2.208e^-4	0.644	INTRON CG9663
3R	23267896	3R_23267896_SNP [dm3] 3R_27442174_SNP [dm6]	C	T	2.219e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13184610	2R_13184610_SNP [dm3] 2R_17297105_SNP [dm6]	A	C	2.219e^-4	0.645	INTRON mbl
X	3143222	X_3143222_SNP [dm3] X_3249189_SNP [dm6]	A	T	2.226e^-4	0.645	SYNONYMOUS_CODING Pig1 UPSTREAM Sgs4 INTRON dnc
3L	3020677	3L_3020677_SNP [dm3] 3L_3020677_SNP [dm6]	C	T	2.232e^-4	0.645	INTERGENIC
3L	14299200	3L_14299200_SNP [dm3] 3L_14306100_SNP [dm6]	G	C	2.232e^-4	0.645	INTRON fz
2R	8462941	2R_8462941_SNP [dm3] 2R_12575436_SNP [dm6]	T	C	2.233e^-4	0.645	UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
3L	3020681	3L_3020681_SNP [dm3] 3L_3020681_SNP [dm6]	G	A	2.237e^-4	0.645	INTERGENIC
3R	26589003	3R_26589003_SNP [dm3] 3R_30763281_SNP [dm6]	C	A	2.240e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	19997437	X_19997437_SNP [dm3] X_20103404_SNP [dm6]	T	A	2.243e^-4	0.645	INTERGENIC
2L	12554476	2L_12554476_SNP [dm3] 2L_12554476_SNP [dm6]	T	C	2.248e^-4	0.645	INTERGENIC
2L	18820270	2L_18820270_SNP [dm3] 2L_18820270_SNP [dm6]	T	C	2.249e^-4	0.645	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
2L	5389244	2L_5389244_SNP [dm3] 2L_5389244_SNP [dm6]	A	T	2.255e^-4	0.646	DOWNSTREAM CR44745 INTERGENIC
3R	10763537	3R_10763537_SNP [dm3] 3R_14937815_SNP [dm6]	A	T	2.259e^-4	0.646	INTERGENIC
2L	7141675	2L_7141675_SNP [dm3] 2L_7141675_SNP [dm6]	G	A	2.272e^-4	0.647	UPSTREAM CR44612 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	25266266	3R_25266266_SNP [dm3] 3R_29440544_SNP [dm6]	T	G	2.273e^-4	0.647	INTRON Ptp99A
2R	5732852	2R_5732852_SNP [dm3] 2R_9845347_SNP [dm6]	A	G	2.275e^-4	0.647	UTR_3_PRIME CG1667 DOWNSTREAM Orc6
2R	5740214	2R_5740214_SNP [dm3] 2R_9852709_SNP [dm6]	C	T	2.278e^-4	0.647	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_chinmo
3L	11429272	3L_11429272_SNP [dm3] 3L_11436172_SNP [dm6]	C	T	2.282e^-4	0.648	UPSTREAM CG6149 EXON CR44548	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	16076213	2R_16076213_SNP [dm3] 2R_20188708_SNP [dm6]	A	G	2.294e^-4	0.65	INTERGENIC
3L	10377660	3L_10377660_SNP [dm3] 3L_10384560_SNP [dm6]	C	G	2.307e^-4	0.653	INTERGENIC
3L	12630105	3L_12630105_SNP [dm3] 3L_12637005_SNP [dm6]	A	T	2.331e^-4	0.655	INTRON CR32111
3L	12630107	3L_12630107_SNP [dm3] 3L_12637007_SNP [dm6]	A	T	2.331e^-4	0.655	INTRON CR32111
3R	26038787	3R_26038787_SNP [dm3] 3R_30213065_SNP [dm6]	A	G	2.333e^-4	0.655	DOWNSTREAM CecB & 1 other EXON Cec2
2L	2880330	2L_2880330_SNP [dm3] 2L_2880330_SNP [dm6]	C	T	2.338e^-4	0.655	SYNONYMOUS_CODING betaggt-II DOWNSTREAM NTPase	TF binding site mE1_TFBS_chinmo
3R	15461960	3R_15461960_SNP [dm3] 3R_19636238_SNP [dm6]	A	T	2.339e^-4	0.655	DOWNSTREAM CG34138 INTRON subdued
2L	879957	2L_879957_SNP [dm3] 2L_879957_SNP [dm6]	G	A	2.352e^-4	0.655	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
2L	10183804	2L_10183804_DEL [dm3] 2L_10183804_DEL [dm6]	GTG	G	2.355e^-4	0.655	INTRON Sur
3R	11774243	3R_11774243_SNP [dm3] 3R_15948521_SNP [dm6]	G	A	2.358e^-4	0.655	INTRON Sap47
2L	8531363	2L_8531363_SNP [dm3] 2L_8531363_SNP [dm6]	A	T	2.368e^-4	0.655	INTRON CG17834
3R	24107496	3R_24107496_SNP [dm3] 3R_28281774_SNP [dm6]	A	C	2.368e^-4	0.655	UPSTREAM CG34436 INTERGENIC
2L	10704390	2L_10704390_SNP [dm3] 2L_10704390_SNP [dm6]	C	A	2.370e^-4	0.655	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo
2L	2053328	2L_2053328_DEL [dm3] 2L_2053328_DEL [dm6]	GATATGG	G	2.371e^-4	0.655	INTERGENIC
3R	15791971	3R_15791971_SNP [dm3] 3R_19966249_SNP [dm6]	C	T	2.373e^-4	0.655	INTRON Hs6st
2L	5577269	2L_5577269_SNP [dm3] 2L_5577269_SNP [dm6]	T	A	2.374e^-4	0.655	INTERGENIC
2R	5704235	2R_5704235_DEL [dm3] 2R_9816730_DEL [dm6]	CC	G	2.380e^-4	0.655	UPSTREAM lectin-46Ca DOWNSTREAM lectin-46Cb INTRON CG1648
2R	5884816	2R_5884816_SNP [dm3] 2R_9997311_SNP [dm6]	C	A	2.383e^-4	0.655	UTR_3_PRIME Pka-R2 INTRON Pka-R2
2R	12523324	2R_12523324_SNP [dm3] 2R_16635819_SNP [dm6]	A	C	2.383e^-4	0.655	INTRON Alk	TF binding site BDTNP1_TFBS_dl
2R	5714969	2R_5714969_SNP [dm3] 2R_9827464_SNP [dm6]	A	T	2.385e^-4	0.655	UPSTREAM dila DOWNSTREAM hebe INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	12479603	2R_12479603_SNP [dm3] 2R_16592098_SNP [dm6]	T	A	2.389e^-4	0.655	INTRON CG8306
3R	16763338	3R_16763338_SNP [dm3] 3R_20937616_SNP [dm6]	T	C	2.392e^-4	0.655	INTRON CG31191
3R	12458394	3R_12458394_SNP [dm3] 3R_16632672_SNP [dm6]	A	G	2.392e^-4	0.655	SYNONYMOUS_CODING Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11334291	2R_11334291_SNP [dm3] 2R_15446786_SNP [dm6]	A	G	2.392e^-4	0.655	INTRON CG43729
2R	13549434	2R_13549434_SNP [dm3] 2R_17661929_SNP [dm6]	T	C	2.401e^-4	0.656	INTRON CCHa1-R
3L	10377711	3L_10377711_SNP [dm3] 3L_10384611_SNP [dm6]	T	C	2.412e^-4	0.658	INTERGENIC
2L	4622857	2L_4622857_SNP [dm3] 2L_4622857_SNP [dm6]	T	G	2.417e^-4	0.658	INTERGENIC
3R	26038799	3R_26038799_SNP [dm3] 3R_30213077_SNP [dm6]	G	C	2.417e^-4	0.658	DOWNSTREAM CecB & 1 other EXON Cec2
3L	8295874	3L_8295874_SNP [dm3] 3L_8302774_SNP [dm6]	A	T	2.424e^-4	0.659	NON_SYNONYMOUS_CODING CG7194 DOWNSTREAM CG13671	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1932265	2L_1932265_SNP [dm3] 2L_1932265_SNP [dm6]	C	T	2.441e^-4	0.663	INTRON CG7337
2L	8540435	2L_8540435_SNP [dm3] 2L_8540435_SNP [dm6]	C	A	2.445e^-4	0.663	INTRON CG17834
3R	21205564	3R_21205564_SNP [dm3] 3R_25379842_SNP [dm6]	G	A	2.457e^-4	0.663	INTRON Fur1
2R	984639	2R_984639_SNP [dm3] 2R_5097134_SNP [dm6]	G	A	2.460e^-4	0.663	INTERGENIC	transposable element FlyBase
2R	5715307	2R_5715307_SNP [dm3] 2R_9827802_SNP [dm6]	A	G	2.461e^-4	0.663	UPSTREAM dila DOWNSTREAM hebe INTERGENIC	regulatory region REDfly_CRMs
3L	20549471	3L_20549471_SNP [dm3] 3L_20556371_SNP [dm6]	G	T	2.462e^-4	0.663	INTERGENIC
2R	6568558	2R_6568558_DEL [dm3] 2R_10681053_DEL [dm6]	GGTCCACAACACC...	A	2.463e^-4	0.663	INTRON stan	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2R	14081083	2R_14081083_SNP [dm3] 2R_18193578_SNP [dm6]	A	T	2.475e^-4	0.665	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5386168	2L_5386168_SNP [dm3] 2L_5386168_SNP [dm6]	C	T	2.477e^-4	0.665	INTERGENIC
2L	13957790	2L_13957790_SNP [dm3] 2L_13957790_SNP [dm6]	A	T	2.486e^-4	0.666	UTR_5_PRIME NimA
3R	15462650	3R_15462650_SNP [dm3] 3R_19636928_SNP [dm6]	A	C	2.509e^-4	0.667	SYNONYMOUS_CODING subdued
2R	8458938	2R_8458938_SNP [dm3] 2R_12571433_SNP [dm6]	G	A	2.513e^-4	0.667	SYNONYMOUS_CODING stil UPSTREAM ClC-b
2R	5734134	2R_5734134_SNP [dm3] 2R_9846629_SNP [dm6]	T	G	2.513e^-4	0.667	UPSTREAM Orc6 DOWNSTREAM Prosalpha7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2L	10660350	2L_10660350_SNP [dm3] 2L_10660350_SNP [dm6]	C	G	2.525e^-4	0.667	INTERGENIC
2R	6746565	2R_6746565_SNP [dm3] 2R_10859060_SNP [dm6]	A	T	2.526e^-4	0.667	UPSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl
2R	6746566	2R_6746566_SNP [dm3] 2R_10859061_SNP [dm6]	C	T	2.526e^-4	0.667	UPSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl
2L	7336601	2L_7336601_DEL [dm3] 2L_7336601_DEL [dm6]	TGT	T	2.529e^-4	0.667	INTRON Wnt6
X	18534487	X_18534487_INS [dm3] X_18640454_INS [dm6]	G	GGCG	2.531e^-4	0.667	INTRON Rip11	TF binding site mE1_TFBS_HSA
2L	1233443	2L_1233443_SNP [dm3] 2L_1233443_SNP [dm6]	A	G	2.539e^-4	0.667	INTERGENIC
3L	3766402	3L_3766402_SNP [dm3] 3L_3766402_SNP [dm6]	T	C	2.540e^-4	0.667	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6163922	2R_6163922_SNP [dm3] 2R_10276417_SNP [dm6]	G	T	2.544e^-4	0.667	START_GAINED CAP UTR_5_PRIME CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14021464	2L_14021464_SNP [dm3] 2L_14021464_SNP [dm6]	T	C	2.550e^-4	0.667	DOWNSTREAM CR45352 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18534606	X_18534606_SNP [dm3] X_18640573_SNP [dm6]	C	G	2.562e^-4	0.667	INTRON Rip11
3R	11993553	3R_11993553_SNP [dm3] 3R_16167831_SNP [dm6]	G	T	2.562e^-4	0.667	DOWNSTREAM CR43472 INTRON CG6006	TF binding site BDTNP1_TFBS_twi
2R	5708738	2R_5708738_SNP [dm3] 2R_9821233_SNP [dm6]	T	A	2.565e^-4	0.667	UTR_3_PRIME CG30001 DOWNSTREAM CG34033
2R	14183279	2R_14183279_SNP [dm3] 2R_18295774_SNP [dm6]	A	G	2.585e^-4	0.667	UPSTREAM CG18537 DOWNSTREAM CG18536 INTRON sbb
3R	26916466	3R_26916466_SNP [dm3] 3R_31090744_SNP [dm6]	C	A	2.593e^-4	0.667	UTR_3_PRIME CG11317
3L	14294173	3L_14294173_SNP [dm3] 3L_14301073_SNP [dm6]	T	A	2.593e^-4	0.667	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13447339	3L_13447339_SNP [dm3] 3L_13454239_SNP [dm6]	G	A	2.598e^-4	0.667	INTRON CG10738
3L	17985868	3L_17985868_SNP [dm3] 3L_17992768_SNP [dm6]	C	G	2.599e^-4	0.667	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9579123	3L_9579123_SNP [dm3] 3L_9586023_SNP [dm6]	G	A	2.602e^-4	0.667	INTRON CG42673
3L	9579125	3L_9579125_SNP [dm3] 3L_9586025_SNP [dm6]	G	A	2.602e^-4	0.667	INTRON CG42673
2L	8539830	2L_8539830_SNP [dm3] 2L_8539830_SNP [dm6]	C	T	2.607e^-4	0.667	INTRON CG17834
2R	11750937	2R_11750937_SNP [dm3] 2R_15863432_SNP [dm6]	T	C	2.615e^-4	0.667	UPSTREAM Gpo-1 DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12545469	2L_12545469_INS [dm3] 2L_12545469_INS [dm6]	A	AAACA	2.615e^-4	0.667	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	14261969	2L_14261969_SNP [dm3] 2L_14261969_SNP [dm6]	A	G	2.616e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	25416680	3R_25416680_DEL [dm3] 3R_29590958_DEL [dm6]	AGT	A	2.623e^-4	0.667	UPSTREAM alph & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	15461953	3R_15461953_SNP [dm3] 3R_19636231_SNP [dm6]	T	A	2.627e^-4	0.667	DOWNSTREAM CG34138 INTRON subdued
2L	2041724	2L_2041724_SNP [dm3] 2L_2041724_SNP [dm6]	C	G	2.628e^-4	0.667	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11798822	2R_11798822_SNP [dm3] 2R_15911317_SNP [dm6]	C	T	2.632e^-4	0.667	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17399563	3R_17399563_SNP [dm3] 3R_21573841_SNP [dm6]	T	C	2.635e^-4	0.667	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad
2L	8508773	2L_8508773_SNP [dm3] 2L_8508773_SNP [dm6]	G	A	2.639e^-4	0.667	DOWNSTREAM CG13096 INTERGENIC
2R	13160227	2R_13160227_SNP [dm3] 2R_17272722_SNP [dm6]	G	A	2.639e^-4	0.667	INTRON mbl
2R	12982775	2R_12982775_SNP [dm3] 2R_17095270_SNP [dm6]	T	A	2.644e^-4	0.667	INTRON GstS1	TF binding site mE1_TFBS_cad
2R	5786202	2R_5786202_SNP [dm3] 2R_9898697_SNP [dm6]	A	T	2.648e^-4	0.667	DOWNSTREAM CG1441 & 1 other INTERGENIC
3R	19066648	3R_19066648_SNP [dm3] 3R_23240926_SNP [dm6]	A	G	2.652e^-4	0.667	UPSTREAM CG4467 INTRON CG4467
3L	10417148	3L_10417148_SNP [dm3] 3L_10424048_SNP [dm6]	A	C	2.654e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	5701074	2R_5701074_SNP [dm3] 2R_9813569_SNP [dm6]	C	A	2.658e^-4	0.667	UPSTREAM CG1648 INTRON CG1648
2R	8546657	2R_8546657_SNP [dm3] 2R_12659152_SNP [dm6]	A	G	2.660e^-4	0.667	NON_SYNONYMOUS_CODING CG8646 DOWNSTREAM nemy	TF binding site mE1_TFBS_cad
X	18537963	X_18537963_SNP [dm3] X_18643930_SNP [dm6]	G	T	2.661e^-4	0.667	INTRON Rip11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18304684	3L_18304684_SNP [dm3] 3L_18311584_SNP [dm6]	A	T	2.661e^-4	0.667	INTERGENIC
2L	6591474	2L_6591474_SNP [dm3] 2L_6591474_SNP [dm6]	C	A	2.666e^-4	0.667	INTRON CG11319
2L	3499286	2L_3499286_SNP [dm3] 2L_3499286_SNP [dm6]	G	A	2.668e^-4	0.667	INTRON tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	8288340	3L_8288340_SNP [dm3] 3L_8295240_SNP [dm6]	G	A	2.669e^-4	0.667	UTR_5_PRIME CG7201
3L	10361750	3L_10361750_SNP [dm3] 3L_10368650_SNP [dm6]	G	C	2.679e^-4	0.667	INTERGENIC
2L	18622581	2L_18622581_SNP [dm3] 2L_18622581_SNP [dm6]	G	T	2.680e^-4	0.667	INTRON MESR3
3L	10377628	3L_10377628_SNP [dm3] 3L_10384528_SNP [dm6]	G	A	2.680e^-4	0.667	INTERGENIC
2L	2081344	2L_2081344_SNP [dm3] 2L_2081344_SNP [dm6]	T	C	2.682e^-4	0.667	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3
2R	3346581	2R_3346581_SNP [dm3] 2R_7459076_SNP [dm6]	G	T	2.685e^-4	0.667	UPSTREAM Inos DOWNSTREAM CG11141 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12050127	3L_12050127_SNP [dm3] 3L_12057027_SNP [dm6]	T	A	2.689e^-4	0.667	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13512518	2R_13512518_SNP [dm3] 2R_17625013_SNP [dm6]	G	T	2.693e^-4	0.667	INTRON CG10936
2R	13551510	2R_13551510_SNP [dm3] 2R_17664005_SNP [dm6]	C	T	2.697e^-4	0.667	INTRON CCHa1-R
3L	13447307	3L_13447307_SNP [dm3] 3L_13454207_SNP [dm6]	G	A	2.699e^-4	0.667	INTRON CG10738
2R	19398584	2R_19398584_SNP [dm3] 2R_23511061_SNP [dm6]	A	G	2.704e^-4	0.667	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
X	18534489	X_18534489_SNP [dm3] X_18640456_SNP [dm6]	T	C	2.706e^-4	0.667	INTRON Rip11	TF binding site mE1_TFBS_HSA
3R	16726315	3R_16726315_SNP [dm3] 3R_20900593_SNP [dm6]	T	C	2.715e^-4	0.667	INTERGENIC
2L	2241569	2L_2241569_DEL [dm3] 2L_2241569_DEL [dm6]	AGCCCA	A	2.717e^-4	0.667	UPSTREAM Tengl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26080673	3R_26080673_SNP [dm3] 3R_30254951_SNP [dm6]	T	G	2.723e^-4	0.667	DOWNSTREAM CG18404 INTERGENIC
2L	6514429	2L_6514429_SNP [dm3] 2L_6514429_SNP [dm6]	G	C	2.729e^-4	0.667	INTRON CG31637
2L	8531505	2L_8531505_SNP [dm3] 2L_8531505_SNP [dm6]	A	T	2.733e^-4	0.667	INTRON CG17834
3R	15461970	3R_15461970_SNP [dm3] 3R_19636248_SNP [dm6]	G	A	2.736e^-4	0.667	DOWNSTREAM CG34138 INTRON subdued
3R	7146731	3R_7146731_INS [dm3] 3R_11321009_INS [dm6]	A	AA	2.745e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	5782314	2R_5782314_SNP [dm3] 2R_9894809_SNP [dm6]	A	G	2.749e^-4	0.667	NON_SYNONYMOUS_CODING CG30007
3R	26039355	3R_26039355_SNP [dm3] 3R_30213633_SNP [dm6]	T	C	2.752e^-4	0.667	SYNONYMOUS_CODING CecB DOWNSTREAM Cec2
2R	13885114	2R_13885114_SNP [dm3] 2R_17997609_SNP [dm6]	T	C	2.753e^-4	0.667	INTRON dpr13
2R	5794890	2R_5794890_SNP [dm3] 2R_9907385_SNP [dm6]	G	A	2.754e^-4	0.667	INTRON FMRFa	TF binding site mE1_TFBS_HSA
2R	5833750	2R_5833750_SNP [dm3] 2R_9946245_SNP [dm6]	A	C	2.755e^-4	0.667	INTRON Mef2
3R	11987404	3R_11987404_SNP [dm3] 3R_16161682_SNP [dm6]	C	T	2.757e^-4	0.667	INTRON CG6006
2L	8529492	2L_8529492_SNP [dm3] 2L_8529492_SNP [dm6]	T	A	2.759e^-4	0.667	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3R	24825485	3R_24825485_SNP [dm3] 3R_28999763_SNP [dm6]	C	T	2.760e^-4	0.667	INTRON wat
2L	1287824	2L_1287824_SNP [dm3] 2L_1287824_SNP [dm6]	G	T	2.766e^-4	0.667	INTRON robo3
3L	5892497	3L_5892497_SNP [dm3] 3L_5899397_SNP [dm6]	A	G	2.771e^-4	0.667	UPSTREAM CG32409 DOWNSTREAM CG5592 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	26916453	3R_26916453_SNP [dm3] 3R_31090731_SNP [dm6]	T	A	2.771e^-4	0.667	UTR_3_PRIME CG11317
3R	26916454	3R_26916454_SNP [dm3] 3R_31090732_SNP [dm6]	T	A	2.771e^-4	0.667	UTR_3_PRIME CG11317
3R	26916456	3R_26916456_DEL [dm3] 3R_31090734_DEL [dm6]	TTG	T	2.771e^-4	0.667	UTR_3_PRIME CG11317
3R	26916461	3R_26916461_SNP [dm3] 3R_31090739_SNP [dm6]	A	T	2.771e^-4	0.667	UTR_3_PRIME CG11317
3R	26916463	3R_26916463_SNP [dm3] 3R_31090741_SNP [dm6]	A	G	2.771e^-4	0.667	UTR_3_PRIME CG11317
2L	10704096	2L_10704096_SNP [dm3] 2L_10704096_SNP [dm6]	T	A	2.786e^-4	0.667	INTRON Lip2 & 1 other
2L	7852972	2L_7852972_SNP [dm3] 2L_7852972_SNP [dm6]	A	G	2.786e^-4	0.667	SYNONYMOUS_CODING CG14535
3L	10361849	3L_10361849_SNP [dm3] 3L_10368749_SNP [dm6]	T	C	2.787e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10373067	3R_10373067_SNP [dm3] 3R_14547345_SNP [dm6]	C	T	2.794e^-4	0.667	INTRON Pde6
2R	17163370	2R_17163370_SNP [dm3] 2R_21275865_SNP [dm6]	T	G	2.796e^-4	0.667	INTRON Rgk3
2R	8790543	2R_8790543_SNP [dm3] 2R_12903038_SNP [dm6]	C	A	2.800e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14162808	3L_14162808_SNP [dm3] 3L_14169708_SNP [dm6]	A	C	2.800e^-4	0.667	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	16040861	3L_16040861_SNP [dm3] 3L_16047761_SNP [dm6]	G	T	2.802e^-4	0.667	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2R	15273307	2R_15273307_SNP [dm3] 2R_19385802_SNP [dm6]	A	G	2.804e^-4	0.667	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
X	18540327	X_18540327_SNP [dm3] X_18646294_SNP [dm6]	G	A	2.805e^-4	0.667	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12808661	2R_12808661_SNP [dm3] 2R_16921156_SNP [dm6]	T	G	2.806e^-4	0.667	INTERGENIC
3L	4141299	3L_4141299_SNP [dm3] 3L_4141299_SNP [dm6]	T	A	2.809e^-4	0.667	UTR_3_PRIME Ras64B UPSTREAM Akh
3L	4688192	3L_4688192_SNP [dm3] 3L_4688192_SNP [dm6]	T	C	2.813e^-4	0.667	SYNONYMOUS_CODING CG7514 UPSTREAM axo DOWNSTREAM CG18418	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15226002	2R_15226002_SNP [dm3] 2R_19338497_SNP [dm6]	T	A	2.813e^-4	0.667	INTRON Rgk1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8530438	2L_8530438_SNP [dm3] 2L_8530438_SNP [dm6]	T	A	2.821e^-4	0.668	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	1644664	2L_1644664_SNP [dm3] 2L_1644664_SNP [dm6]	A	T	2.829e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	8503802	2L_8503802_SNP [dm3] 2L_8503802_SNP [dm6]	A	T	2.849e^-4	0.672	INTRON Dh31
2L	8533835	2L_8533835_SNP [dm3] 2L_8533835_SNP [dm6]	G	C	2.854e^-4	0.672	INTRON CG17834	TF binding site mE1_TFBS_cad
2R	5751122	2R_5751122_DEL [dm3] 2R_9863617_DEL [dm6]	TCGCTGT	T	2.863e^-4	0.672	UPSTREAM CG30010 DOWNSTREAM cbx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2607748	2L_2607748_INS [dm3] 2L_2607748_INS [dm6]	T	TCGTT	2.864e^-4	0.672	INTERGENIC
2R	6229818	2R_6229818_SNP [dm3] 2R_10342313_SNP [dm6]	T	A	2.865e^-4	0.672	INTRON CG42732
2L	8508450	2L_8508450_SNP [dm3] 2L_8508450_SNP [dm6]	A	C	2.867e^-4	0.672	DOWNSTREAM CG13096 INTERGENIC
3L	12106245	3L_12106245_SNP [dm3] 3L_12113145_SNP [dm6]	A	G	2.867e^-4	0.672	INTERGENIC
2L	3505553	2L_3505553_SNP [dm3] 2L_3505553_SNP [dm6]	T	C	2.868e^-4	0.672	INTRON tim	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9827465	2L_9827465_SNP [dm3] 2L_9827465_SNP [dm6]	A	C	2.874e^-4	0.672	INTRON nAChRalpha6
3L	12630155	3L_12630155_SNP [dm3] 3L_12637055_SNP [dm6]	A	G	2.877e^-4	0.672	INTRON CR32111
2R	5731251	2R_5731251_SNP [dm3] 2R_9843746_SNP [dm6]	C	T	2.882e^-4	0.672	START_GAINED CG1667 UTR_5_PRIME CG1667 UPSTREAM CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	10848239	3L_10848239_SNP [dm3] 3L_10855139_SNP [dm6]	G	A	2.889e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7747822	3R_7747822_DEL [dm3] 3R_11922100_DEL [dm6]	GG	G	2.893e^-4	0.672	INTRON Cad87A
3R	16324707	3R_16324707_SNP [dm3] 3R_20498985_SNP [dm6]	G	A	2.898e^-4	0.672	INTERGENIC
2R	16023570	2R_16023570_SNP [dm3] 2R_20136065_SNP [dm6]	A	G	2.901e^-4	0.672	DOWNSTREAM CR44634 INTERGENIC
2R	10201299	2R_10201299_SNP [dm3] 2R_14313794_SNP [dm6]	A	T	2.910e^-4	0.672	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22696172	3R_22696172_SNP [dm3] 3R_26870450_SNP [dm6]	A	G	2.918e^-4	0.672	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	17604614	2R_17604614_DEL [dm3] 2R_21717109_DEL [dm6]	AGAGATTA	A	2.918e^-4	0.672	UTR_3_PRIME Tango11 UPSTREAM CG30398 DOWNSTREAM HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	26942376	3R_26942376_SNP [dm3] 3R_31116654_SNP [dm6]	A	G	2.920e^-4	0.672	INTERGENIC
3L	14288209	3L_14288209_SNP [dm3] 3L_14295109_SNP [dm6]	A	G	2.923e^-4	0.672	INTRON fz
2R	6363381	2R_6363381_SNP [dm3] 2R_10475876_SNP [dm6]	C	A	2.923e^-4	0.672	UPSTREAM whd INTRON whd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4242700	3L_4242700_SNP [dm3] 3L_4242700_SNP [dm6]	G	A	2.927e^-4	0.672	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	1657813	2L_1657813_SNP [dm3] 2L_1657813_SNP [dm6]	C	T	2.930e^-4	0.672	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	26388554	3R_26388554_SNP [dm3] 3R_30562832_SNP [dm6]	A	G	2.938e^-4	0.672	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6389265	3L_6389265_SNP [dm3] 3L_6396165_SNP [dm6]	T	A	2.939e^-4	0.672	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10377546	3L_10377546_SNP [dm3] 3L_10384446_SNP [dm6]	A	C	2.940e^-4	0.672	INTERGENIC
2R	5792767	2R_5792767_SNP [dm3] 2R_9905262_SNP [dm6]	G	C	2.947e^-4	0.672	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	4911521	2L_4911521_DEL [dm3] 2L_4911521_DEL [dm6]	TA	C	2.949e^-4	0.672	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16576220	3R_16576220_SNP [dm3] 3R_20750498_SNP [dm6]	T	A	2.949e^-4	0.672	INTRON CG42322
2L	4893828	2L_4893828_SNP [dm3] 2L_4893828_SNP [dm6]	C	T	2.949e^-4	0.672	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1643818	2L_1643818_DEL [dm3] 2L_1643818_DEL [dm6]	AT	A	2.952e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24103564	3R_24103564_SNP [dm3] 3R_28277842_SNP [dm6]	A	G	2.959e^-4	0.673	INTERGENIC
2R	3525765	2R_3525765_SNP [dm3] 2R_7638260_SNP [dm6]	C	A	2.973e^-4	0.673	UTR_5_PRIME CG43340 UPSTREAM CG43340 INTRON CG43340
3L	4792381	3L_4792381_SNP [dm3] 3L_4792381_SNP [dm6]	T	A	2.975e^-4	0.673	SYNONYMOUS_CODING RhoGEF64C	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
2R	5736846	2R_5736846_SNP [dm3] 2R_9849341_SNP [dm6]	T	C	2.984e^-4	0.673	SYNONYMOUS_CODING CG1671	TF binding site mE1_TFBS_sens
2R	10201194	2R_10201194_SNP [dm3] 2R_14313689_SNP [dm6]	A	G	2.985e^-4	0.673	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10201195	2R_10201195_SNP [dm3] 2R_14313690_SNP [dm6]	T	A	2.985e^-4	0.673	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2614707	2L_2614707_SNP [dm3] 2L_2614707_SNP [dm6]	A	T	2.988e^-4	0.673	INTERGENIC
3R	11988507	3R_11988507_SNP [dm3] 3R_16162785_SNP [dm6]	C	T	2.990e^-4	0.673	INTRON CG6006
3L	11031363	3L_11031363_SNP [dm3] 3L_11038263_SNP [dm6]	C	T	2.994e^-4	0.673	SYNONYMOUS_CODING CG43693
2R	5708778	2R_5708778_SNP [dm3] 2R_9821273_SNP [dm6]	G	A	2.997e^-4	0.673	NON_SYNONYMOUS_CODING CG30001 DOWNSTREAM CG34033
3R	26388745	3R_26388745_SNP [dm3] 3R_30563023_SNP [dm6]	A	T	2.999e^-4	0.673	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11031378	3L_11031378_SNP [dm3] 3L_11038278_SNP [dm6]	C	T	3.001e^-4	0.673	SYNONYMOUS_CODING CG43693
X	11824324	X_11824324_DEL [dm3] X_11930291_DEL [dm6]	TGGTGAAACCAAGT...	A	3.004e^-4	0.673	DOWNSTREAM cac INTRON CG10362
2L	8503801	2L_8503801_SNP [dm3] 2L_8503801_SNP [dm6]	G	A	3.010e^-4	0.674	INTRON Dh31
X	18544155	X_18544155_SNP [dm3] X_18650122_SNP [dm6]	C	G	3.031e^-4	0.676	DOWNSTREAM CG6540 & 1 other INTRON CG6617	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5732693	2R_5732693_SNP [dm3] 2R_9845188_SNP [dm6]	G	A	3.036e^-4	0.676	UTR_3_PRIME CG1667 DOWNSTREAM Orc6
3R	16580602	3R_16580602_SNP [dm3] 3R_20754880_SNP [dm6]	T	G	3.042e^-4	0.676	INTRON CG42322	TF binding site mE1_TFBS_sens
3L	10401132	3L_10401132_SNP [dm3] 3L_10408032_SNP [dm6]	T	G	3.045e^-4	0.676	INTERGENIC
3R	11291926	3R_11291926_SNP [dm3] 3R_15466204_SNP [dm6]	C	G	3.048e^-4	0.676	INTRON AdamTS-A
2R	13549424	2R_13549424_DEL [dm3] 2R_17661919_DEL [dm6]	ACAATA	A	3.060e^-4	0.676	INTRON CCHa1-R
2L	4893826	2L_4893826_SNP [dm3] 2L_4893826_SNP [dm6]	C	T	3.060e^-4	0.676	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5731331	2R_5731331_SNP [dm3] 2R_9843826_SNP [dm6]	T	A	3.061e^-4	0.676	NON_SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	12251727	2R_12251727_SNP [dm3] 2R_16364222_SNP [dm6]	A	G	3.062e^-4	0.676	UTR_5_PRIME CG15711 DOWNSTREAM CG6262
2R	13860446	2R_13860446_SNP [dm3] 2R_17972941_SNP [dm6]	T	C	3.062e^-4	0.676	INTERGENIC
3R	16763353	3R_16763353_SNP [dm3] 3R_20937631_SNP [dm6]	T	C	3.062e^-4	0.676	INTRON CG31191
3R	16977816	3R_16977816_SNP [dm3] 3R_21152094_SNP [dm6]	C	T	3.064e^-4	0.676	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
2L	2436245	2L_2436245_SNP [dm3] 2L_2436245_SNP [dm6]	G	A	3.066e^-4	0.676	INTRON dpp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5791626	2R_5791626_SNP [dm3] 2R_9904121_SNP [dm6]	G	T	3.077e^-4	0.676	UPSTREAM CG1441 INTERGENIC	enhancer mE1_CBP_Enhancers
2R	12144917	2R_12144917_SNP [dm3] 2R_16257412_SNP [dm6]	G	A	3.078e^-4	0.676	INTRON CngA
2R	15035690	2R_15035690_SNP [dm3] 2R_19148185_SNP [dm6]	T	A	3.079e^-4	0.676	INTRON ena	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3567445	2L_3567445_SNP [dm3] 2L_3567445_SNP [dm6]	A	T	3.083e^-4	0.676	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16544079	2L_16544079_INS [dm3] 2L_16544079_INS [dm6]	A	AATAA	3.086e^-4	0.676	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	4576873	3L_4576873_SNP [dm3] 3L_4576873_SNP [dm6]	A	G	3.095e^-4	0.677	INTRON CG42540
2L	8531677	2L_8531677_SNP [dm3] 2L_8531677_SNP [dm6]	C	T	3.101e^-4	0.678	INTRON CG17834
2L	6591471	2L_6591471_SNP [dm3] 2L_6591471_SNP [dm6]	G	A	3.109e^-4	0.679	INTRON CG11319
2R	8468085	2R_8468085_DEL [dm3] 2R_12580580_DEL [dm6]	GTGG	G	3.115e^-4	0.679	CODON_DELETION Sin3A
3R	22216662	3R_22216662_SNP [dm3] 3R_26390940_SNP [dm6]	G	A	3.120e^-4	0.679	INTERGENIC
3L	12630180	3L_12630180_SNP [dm3] 3L_12637080_SNP [dm6]	A	T	3.122e^-4	0.679	INTRON CR32111
3R	16538192	3R_16538192_SNP [dm3] 3R_20712470_SNP [dm6]	C	G	3.131e^-4	0.681	INTRON Oamb
2L	10246972	2L_10246972_SNP [dm3] 2L_10246972_SNP [dm6]	T	A	3.149e^-4	0.683	UTR_5_PRIME chico DOWNSTREAM CR44995 & 1 other INTRON chico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	1344206	2L_1344206_SNP [dm3] 2L_1344206_SNP [dm6]	A	T	3.150e^-4	0.683	UPSTREAM Cdlc2 & 1 other INTERGENIC
3L	4145364	3L_4145364_SNP [dm3] 3L_4145364_SNP [dm6]	G	T	3.158e^-4	0.683	INTRON CG32260	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	15461945	3R_15461945_SNP [dm3] 3R_19636223_SNP [dm6]	C	T	3.159e^-4	0.683	SPLICE_SITE_REGION subdued DOWNSTREAM CG34138 INTRON subdued
3L	12050114	3L_12050114_SNP [dm3] 3L_12057014_SNP [dm6]	T	C	3.162e^-4	0.683	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14918126	2L_14918126_SNP [dm3] 2L_14918126_SNP [dm6]	G	T	3.175e^-4	0.683	INTRON CG42313
3L	10848245	3L_10848245_DEL [dm3] 3L_10855145_DEL [dm6]	AACATGTAAAATACAAA...	A	3.176e^-4	0.683	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	640322	2L_640322_SNP [dm3] 2L_640322_SNP [dm6]	T	A	3.176e^-4	0.683	UTR_3_PRIME ds	TF binding site mE1_TFBS_cad
2L	3891023	2L_3891023_SNP [dm3] 2L_3891023_SNP [dm6]	T	C	3.181e^-4	0.683	UPSTREAM capu INTRON capu
2L	9316299	2L_9316299_SNP [dm3] 2L_9316299_SNP [dm6]	G	A	3.183e^-4	0.683	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	15327985	2L_15327985_SNP [dm3] 2L_15327985_SNP [dm6]	C	T	3.186e^-4	0.683	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	5789325	2R_5789325_SNP [dm3] 2R_9901820_SNP [dm6]	A	C	3.188e^-4	0.683	INTRON CG1441	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13807573	2L_13807573_SNP [dm3] 2L_13807573_SNP [dm6]	G	C	3.195e^-4	0.684	DOWNSTREAM adat INTRON CAH1
3R	26907565	3R_26907565_SNP [dm3] 3R_31081843_SNP [dm6]	A	G	3.204e^-4	0.685	INTRON Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26080672	3R_26080672_SNP [dm3] 3R_30254950_SNP [dm6]	G	A	3.208e^-4	0.685	DOWNSTREAM CG18404 INTERGENIC
2R	14761088	2R_14761088_SNP [dm3] 2R_18873583_SNP [dm6]	G	A	3.214e^-4	0.685	INTERGENIC
3R	25562532	3R_25562532_SNP [dm3] 3R_29736810_SNP [dm6]	G	A	3.221e^-4	0.685	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	19066285	3R_19066285_SNP [dm3] 3R_23240563_SNP [dm6]	A	G	3.226e^-4	0.685	UPSTREAM CG4467 INTRON CG4467
2R	8459240	2R_8459240_SNP [dm3] 2R_12571735_SNP [dm6]	A	G	3.226e^-4	0.685	NON_SYNONYMOUS_CODING stil UPSTREAM ClC-b
X	13473899	X_13473899_SNP [dm3] X_13579866_SNP [dm6]	C	A	3.229e^-4	0.685	INTRON Tango13
2R	15365823	2R_15365823_INS [dm3] 2R_19478318_INS [dm6]	A	AA	3.231e^-4	0.685	INTRON par-1
2L	14268959	2L_14268959_SNP [dm3] 2L_14268959_SNP [dm6]	G	C	3.236e^-4	0.685	INTRON wb	TF binding site mE1_TFBS_sens
3R	15461973	3R_15461973_SNP [dm3] 3R_19636251_SNP [dm6]	A	G	3.236e^-4	0.685	DOWNSTREAM CG34138 INTRON subdued
3R	22890885	3R_22890885_SNP [dm3] 3R_27065163_SNP [dm6]	T	C	3.239e^-4	0.685	UTR_3_PRIME spz UPSTREAM Nep5 & 1 other
3R	10744081	3R_10744081_SNP [dm3] 3R_14918359_SNP [dm6]	A	G	3.246e^-4	0.686	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_inv
2L	4925818	2L_4925818_SNP [dm3] 2L_4925818_SNP [dm6]	T	C	3.256e^-4	0.686	INTRON hoe1
3R	19064764	3R_19064764_SNP [dm3] 3R_23239042_SNP [dm6]	A	T	3.261e^-4	0.686	INTRON CG4467	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8478947	2R_8478947_SNP [dm3] 2R_12591442_SNP [dm6]	C	G	3.262e^-4	0.686	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	17076810	2R_17076810_SNP [dm3] 2R_21189305_SNP [dm6]	C	T	3.266e^-4	0.686	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
2R	5731291	2R_5731291_SNP [dm3] 2R_9843786_SNP [dm6]	C	T	3.272e^-4	0.686	UTR_5_PRIME CG1667 UPSTREAM CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	15194025	2L_15194025_SNP [dm3] 2L_15194025_SNP [dm6]	T	A	3.277e^-4	0.686	INTRON CG4168
X	4746120	X_4746120_SNP [dm3] X_4852087_SNP [dm6]	G	T	3.279e^-4	0.686	INTRON CG42594
2L	4912312	2L_4912312_SNP [dm3] 2L_4912312_SNP [dm6]	G	A	3.279e^-4	0.686	INTRON hoe1
3R	21203925	3R_21203925_SNP [dm3] 3R_25378203_SNP [dm6]	G	A	3.295e^-4	0.689	INTRON Fur1
2L	4903899	2L_4903899_SNP [dm3] 2L_4903899_SNP [dm6]	G	C	3.303e^-4	0.69	UTR_3_PRIME CG2837 DOWNSTREAM CG2837 & 1 other
3L	24111978	3L_24111978_SNP [dm3] 3L_24118878_SNP [dm6]	G	T	3.317e^-4	0.692	INTRON Snap25
3R	21418728	3R_21418728_SNP [dm3] 3R_25593006_SNP [dm6]	G	A	3.318e^-4	0.692	UTR_3_PRIME ymp INTRON msi & 1 other
2L	1473973	2L_1473973_SNP [dm3] 2L_1473973_SNP [dm6]	A	T	3.325e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8508793	2L_8508793_SNP [dm3] 2L_8508793_SNP [dm6]	C	T	3.329e^-4	0.692	DOWNSTREAM CG13096 INTERGENIC
3L	2679532	3L_2679532_SNP [dm3] 3L_2679532_SNP [dm6]	G	T	3.342e^-4	0.694	INTRON Fife	TF binding site mE1_TFBS_chinmo
2R	5789259	2R_5789259_SNP [dm3] 2R_9901754_SNP [dm6]	C	T	3.343e^-4	0.694	INTRON CG1441	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1198495	3L_1198495_DEL [dm3] 3L_1198495_DEL [dm6]	TC	T	3.354e^-4	0.695	INTRON Aplip1
3L	1357320	3L_1357320_SNP [dm3] 3L_1357320_SNP [dm6]	A	G	3.357e^-4	0.695	INTRON Ptp61F
2R	12851826	2R_12851826_SNP [dm3] 2R_16964321_SNP [dm6]	T	C	3.364e^-4	0.696	EXON CR44376
3R	17905597	3R_17905597_SNP [dm3] 3R_22079875_SNP [dm6]	T	A	3.379e^-4	0.697	UPSTREAM CG13408 DOWNSTREAM how INTERGENIC
2L	4925682	2L_4925682_SNP [dm3] 2L_4925682_SNP [dm6]	T	A	3.381e^-4	0.697	INTRON hoe1
3R	15801003	3R_15801003_SNP [dm3] 3R_19975281_SNP [dm6]	C	A	3.384e^-4	0.697	NON_SYNONYMOUS_CODING CG31213 INTRON Hs6st
3R	25547978	3R_25547978_SNP [dm3] 3R_29722256_SNP [dm6]	A	C	3.386e^-4	0.697	UTR_3_PRIME CG15506 UPSTREAM CG34296 & 1 other	TF binding site mE1_TFBS_chinmo
3L	18057562	3L_18057562_SNP [dm3] 3L_18064462_SNP [dm6]	A	C	3.401e^-4	0.699	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8602256	3L_8602256_SNP [dm3] 3L_8609156_SNP [dm6]	T	C	3.408e^-4	0.7	INTRON CG6282
3R	24104572	3R_24104572_SNP [dm3] 3R_28278850_SNP [dm6]	A	T	3.413e^-4	0.7	INTERGENIC
2R	14708199	2R_14708199_SNP [dm3] 2R_18820694_SNP [dm6]	C	T	3.416e^-4	0.7	SYNONYMOUS_CODING Phb2	TF binding site BDTNP1_TFBS_dl
2R	5704545	2R_5704545_SNP [dm3] 2R_9817040_SNP [dm6]	G	T	3.419e^-4	0.7	UPSTREAM lectin-46Ca DOWNSTREAM lectin-46Cb INTRON CG1648
2L	6753909	2L_6753909_SNP [dm3] 2L_6753909_SNP [dm6]	T	A	3.432e^-4	0.702	INTRON CG11221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23718284	3R_23718284_DEL [dm3] 3R_27892562_DEL [dm6]	TGCTA	C	3.437e^-4	0.702	INTRON CG34353
3L	7097308	3L_7097308_SNP [dm3] 3L_7104208_SNP [dm6]	A	G	3.447e^-4	0.703	INTRON form3
2L	13119804	2L_13119804_SNP [dm3] 2L_13119804_SNP [dm6]	G	A	3.452e^-4	0.703	UPSTREAM CR44198 INTRON CG43050	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10206457	2R_10206457_SNP [dm3] 2R_14318952_SNP [dm6]	T	C	3.455e^-4	0.703	INTRON Shroom
2R	5720384	2R_5720384_SNP [dm3] 2R_9832879_SNP [dm6]	G	T	3.457e^-4	0.703	INTRON hebe
2L	2892277	2L_2892277_SNP [dm3] 2L_2892277_SNP [dm6]	A	T	3.472e^-4	0.705	INTRON lilli
3L	4476486	3L_4476486_SNP [dm3] 3L_4476486_SNP [dm6]	A	T	3.474e^-4	0.705	INTERGENIC
2L	1645244	2L_1645244_SNP [dm3] 2L_1645244_SNP [dm6]	G	A	3.484e^-4	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15791898	3R_15791898_SNP [dm3] 3R_19966176_SNP [dm6]	G	T	3.485e^-4	0.705	INTRON Hs6st
3R	22696155	3R_22696155_SNP [dm3] 3R_26870433_SNP [dm6]	T	A	3.487e^-4	0.705	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	23291390	3R_23291390_SNP [dm3] 3R_27465668_SNP [dm6]	G	A	3.498e^-4	0.705	NON_SYNONYMOUS_CODING CG13978
2R	17074632	2R_17074632_SNP [dm3] 2R_21187127_SNP [dm6]	C	A	3.500e^-4	0.705	SYNONYMOUS_CODING tud
2R	11332330	2R_11332330_SNP [dm3] 2R_15444825_SNP [dm6]	T	C	3.501e^-4	0.705	INTRON CG43729
3R	26916866	3R_26916866_SNP [dm3] 3R_31091144_SNP [dm6]	G	T	3.503e^-4	0.705	UTR_3_PRIME CG11317
2L	6834364	2L_6834364_SNP [dm3] 2L_6834364_SNP [dm6]	T	C	3.508e^-4	0.705	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3890873	2L_3890873_SNP [dm3] 2L_3890873_SNP [dm6]	T	C	3.509e^-4	0.705	UPSTREAM capu INTRON capu
2L	1657810	2L_1657810_SNP [dm3] 2L_1657810_SNP [dm6]	T	C	3.519e^-4	0.705	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	5867623	2R_5867623_SNP [dm3] 2R_9980118_SNP [dm6]	A	C	3.525e^-4	0.705	SYNONYMOUS_CODING eve UPSTREAM CR43948	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7572960	2L_7572960_SNP [dm3] 2L_7572960_SNP [dm6]	A	G	3.526e^-4	0.705	INTRON RapGAP1
2R	5749039	2R_5749039_SNP [dm3] 2R_9861534_SNP [dm6]	T	G	3.526e^-4	0.705	UTR_5_PRIME CG1516 UPSTREAM CG1516 EXON CR44293	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17984085	3L_17984085_SNP [dm3] 3L_17990985_SNP [dm6]	C	A	3.535e^-4	0.705	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	1578529	2L_1578529_SNP [dm3] 2L_1578529_SNP [dm6]	A	G	3.540e^-4	0.705	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16718710	3L_16718710_SNP [dm3] 3L_16725610_SNP [dm6]	A	C	3.542e^-4	0.705	UTR_3_PRIME CG13026 UPSTREAM PGRP-SB2 DOWNSTREAM CG13031
2L	2887670	2L_2887670_SNP [dm3] 2L_2887670_SNP [dm6]	T	C	3.543e^-4	0.705	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	18542221	X_18542221_SNP [dm3] X_18648188_SNP [dm6]	A	T	3.546e^-4	0.705	UTR_5_PRIME CG6540 UPSTREAM Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	11327338	2R_11327338_DEL [dm3] 2R_15439833_DEL [dm6]	TCTT	T	3.547e^-4	0.705	INTRON CG43729
2R	15467481	2R_15467481_SNP [dm3] 2R_19579976_SNP [dm6]	C	T	3.562e^-4	0.707	INTRON sm
2R	14734178	2R_14734178_SNP [dm3] 2R_18846673_SNP [dm6]	G	A	3.567e^-4	0.707	UPSTREAM CG15099 DOWNSTREAM CG15100 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13184183	2R_13184183_SNP [dm3] 2R_17296678_SNP [dm6]	A	G	3.570e^-4	0.707	INTRON mbl
2L	6754539	2L_6754539_SNP [dm3] 2L_6754539_SNP [dm6]	T	C	3.572e^-4	0.707	SYNONYMOUS_CODING CG11221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1645222	2L_1645222_SNP [dm3] 2L_1645222_SNP [dm6]	T	A	3.580e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7097362	3L_7097362_SNP [dm3] 3L_7104262_SNP [dm6]	T	G	3.583e^-4	0.707	INTRON form3
2L	16219131	2L_16219131_SNP [dm3] 2L_16219131_SNP [dm6]	A	G	3.585e^-4	0.707	INTERGENIC
3R	20014624	3R_20014624_SNP [dm3] 3R_24188902_SNP [dm6]	C	T	3.590e^-4	0.707	UPSTREAM CG5515 DOWNSTREAM jnj INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
2L	1271483	2L_1271483_SNP [dm3] 2L_1271483_SNP [dm6]	C	T	3.593e^-4	0.707	INTRON robo3
3L	13989990	3L_13989990_SNP [dm3] 3L_13996890_SNP [dm6]	G	A	3.599e^-4	0.707	UPSTREAM CG17361 DOWNSTREAM 26-29-p INTERGENIC
3R	14097448	3R_14097448_DEL [dm3] 3R_18271726_DEL [dm6]	GCATT	G	3.600e^-4	0.707	DOWNSTREAM CG18599 INTRON Vps39	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	4912425	2L_4912425_SNP [dm3] 2L_4912425_SNP [dm6]	T	A	3.615e^-4	0.707	INTRON hoe1
2R	11878215	2R_11878215_SNP [dm3] 2R_15990710_SNP [dm6]	T	C	3.626e^-4	0.707	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10763720	3R_10763720_SNP [dm3] 3R_14937998_SNP [dm6]	A	T	3.629e^-4	0.707	INTERGENIC
2R	4490343	2R_4490343_SNP [dm3] 2R_8602838_SNP [dm6]	T	G	3.635e^-4	0.707	INTRON rgr	TF binding site mE1_TFBS_cad
3R	26388664	3R_26388664_SNP [dm3] 3R_30562942_SNP [dm6]	C	T	3.636e^-4	0.707	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	12366860	2L_12366860_SNP [dm3] 2L_12366860_SNP [dm6]	A	T	3.637e^-4	0.707	INTRON bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12630112	3L_12630112_SNP [dm3] 3L_12637012_SNP [dm6]	T	G	3.643e^-4	0.707	INTRON CR32111
X	12203124	X_12203124_SNP [dm3] X_12309091_SNP [dm6]	A	G	3.651e^-4	0.707	INTRON Ten-a
3L	14439019	3L_14439019_SNP [dm3] 3L_14445919_SNP [dm6]	A	G	3.655e^-4	0.707	INTRON bbg	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu
X	18539718	X_18539718_SNP [dm3] X_18645685_SNP [dm6]	A	T	3.665e^-4	0.707	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4925681	2L_4925681_SNP [dm3] 2L_4925681_SNP [dm6]	T	A	3.666e^-4	0.707	INTRON hoe1
X	8516500	X_8516500_SNP [dm3] X_8622467_SNP [dm6]	T	A	3.674e^-4	0.707	INTERGENIC
3R	21201273	3R_21201273_SNP [dm3] 3R_25375551_SNP [dm6]	T	A	3.676e^-4	0.707	INTRON Fur1
4	657523	4_657523_DEL [dm3] 4_636897_DEL [dm6]	GAACTGGCCATGTCCGTCTG...	G	3.678e^-4	0.707	UPSTREAM CR44028 INTRON CG9935	transposable element FlyBase
3L	16040483	3L_16040483_SNP [dm3] 3L_16047383_SNP [dm6]	C	T	3.678e^-4	0.707	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15194085	2L_15194085_SNP [dm3] 2L_15194085_SNP [dm6]	T	A	3.682e^-4	0.707	INTRON CG4168
2R	5740133	2R_5740133_SNP [dm3] 2R_9852628_SNP [dm6]	A	C	3.683e^-4	0.707	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_chinmo
2R	8459675	2R_8459675_SNP [dm3] 2R_12572170_SNP [dm6]	T	C	3.684e^-4	0.707	SYNONYMOUS_CODING ClC-b DOWNSTREAM stil	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	8476831	2R_8476831_SNP [dm3] 2R_12589326_SNP [dm6]	G	A	3.686e^-4	0.707	UPSTREAM CR30055 & 1 other INTRON Sin3A EXON CR30055	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	6526015	2R_6526015_SNP [dm3] 2R_10638510_SNP [dm6]	G	T	3.693e^-4	0.707	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
X	18536787	X_18536787_SNP [dm3] X_18642754_SNP [dm6]	C	T	3.696e^-4	0.707	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14914469	2L_14914469_SNP [dm3] 2L_14914469_SNP [dm6]	A	G	3.698e^-4	0.707	INTRON CG42313	TF binding site mE1_TFBS_HSA
2R	12450599	2R_12450599_SNP [dm3] 2R_16563094_SNP [dm6]	G	A	3.700e^-4	0.707	INTRON DAT
2R	13800451	2R_13800451_SNP [dm3] 2R_17912946_SNP [dm6]	A	G	3.700e^-4	0.707	INTRON Elk
X	18534515	X_18534515_SNP [dm3] X_18640482_SNP [dm6]	C	G	3.708e^-4	0.707	INTRON Rip11	TF binding site mE1_TFBS_HSA
X	7981510	X_7981510_INS [dm3] X_8087477_INS [dm6]	T	TT	3.713e^-4	0.707	UPSTREAM CG2256 DOWNSTREAM Ubc-E2H INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17983132	3L_17983132_SNP [dm3] 3L_17990032_SNP [dm6]	T	C	3.714e^-4	0.707	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8265299	3L_8265299_SNP [dm3] 3L_8272199_SNP [dm6]	G	T	3.721e^-4	0.707	INTRON Dscam4	TF binding site mE1_TFBS_cad
2R	14916259	2R_14916259_SNP [dm3] 2R_19028754_SNP [dm6]	T	C	3.722e^-4	0.707	NON_SYNONYMOUS_CODING 5-HT1B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15602894	2R_15602894_SNP [dm3] 2R_19715389_SNP [dm6]	A	T	3.722e^-4	0.707	UPSTREAM tRNA:CR30215 DOWNSTREAM CG8517 INTERGENIC	TF binding site mE1_TFBS_inv
2R	15993126	2R_15993126_SNP [dm3] 2R_20105621_SNP [dm6]	G	C	3.722e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
X	18536975	X_18536975_SNP [dm3] X_18642942_SNP [dm6]	T	C	3.737e^-4	0.707	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4387468	2R_4387468_SNP [dm3] 2R_8499963_SNP [dm6]	G	C	3.737e^-4	0.707	INTRON mtt
3R	13466657	3R_13466657_SNP [dm3] 3R_17640935_SNP [dm6]	C	T	3.743e^-4	0.707	INTRON CG43175
2R	13920130	2R_13920130_INS [dm3] 2R_18032625_INS [dm6]	C	CGGTGCAACAAAAAACAAAA...	3.746e^-4	0.707	INTERGENIC
X	18445697	X_18445697_SNP [dm3] X_18551664_SNP [dm6]	G	A	3.748e^-4	0.707	INTRON Bx
2L	4911991	2L_4911991_SNP [dm3] 2L_4911991_SNP [dm6]	G	T	3.748e^-4	0.707	INTRON hoe1	TF binding site mE1_TFBS_chinmo
X	14036282	X_14036282_SNP [dm3] X_14142249_SNP [dm6]	G	T	3.750e^-4	0.707	DOWNSTREAM CR44658 INTERGENIC
2L	15194055	2L_15194055_SNP [dm3] 2L_15194055_SNP [dm6]	G	C	3.754e^-4	0.707	INTRON CG4168
2L	14911074	2L_14911074_SNP [dm3] 2L_14911074_SNP [dm6]	A	C	3.755e^-4	0.707	INTRON CG42313
3R	26934642	3R_26934642_SNP [dm3] 3R_31108920_SNP [dm6]	G	A	3.760e^-4	0.707	NON_SYNONYMOUS_CODING CG11318	TF binding site mE1_TFBS_cad
2R	5730387	2R_5730387_SNP [dm3] 2R_9842882_SNP [dm6]	G	A	3.762e^-4	0.707	UPSTREAM Vamp7 & 1 other INTRON CG1667	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8537937	2L_8537937_SNP [dm3] 2L_8537937_SNP [dm6]	T	A	3.764e^-4	0.707	DOWNSTREAM CG17834 INTRON CG17834
2R	16571353	2R_16571353_SNP [dm3] 2R_20683848_SNP [dm6]	G	A	3.772e^-4	0.707	INTERGENIC
2R	11336476	2R_11336476_SNP [dm3] 2R_15448971_SNP [dm6]	T	A	3.775e^-4	0.707	INTRON CG43729
2R	9639851	2R_9639851_SNP [dm3] 2R_13752346_SNP [dm6]	T	C	3.779e^-4	0.707	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.075e^-21)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	7.9522	0.0188

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2253 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	11016619	3L_11016619_SNP [dm3] 3L_11023519_SNP [dm6]	T	A	4.241e^-8	0.08	UPSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11021221	3L_11021221_SNP [dm3] 3L_11028121_SNP [dm6]	A	T	1.612e^-7	0.119	SYNONYMOUS_CODING CG32081 DOWNSTREAM CG32079
3L	11004879	3L_11004879_SNP [dm3] 3L_11011779_SNP [dm6]	A	G	2.529e^-7	0.119	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	15074808	3R_15074808_SNP [dm3] 3R_19249086_SNP [dm6]	T	C	2.536e^-7	0.119	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
3R	7859559	3R_7859559_SNP [dm3] 3R_12033837_SNP [dm6]	T	C	5.209e^-7	0.195	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11004941	3L_11004941_SNP [dm3] 3L_11011841_SNP [dm6]	T	G	7.931e^-7	0.215	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	24947353	3R_24947353_SNP [dm3] 3R_29121631_SNP [dm6]	G	T	8.079e^-7	0.215	INTRON yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	12184966	3L_12184966_SNP [dm3] 3L_12191866_SNP [dm6]	G	T	9.183e^-7	0.215	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
3R	13714805	3R_13714805_SNP [dm3] 3R_17889083_SNP [dm6]	T	G	1.614e^-6	0.336	INTRON Rim
3L	11005187	3L_11005187_INS [dm3] 3L_11012087_INS [dm6]	T	TT	1.802e^-6	0.338	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	12163798	3L_12163798_SNP [dm3] 3L_12170698_SNP [dm6]	A	G	2.192e^-6	0.374	INTRON Rh7
3L	12185525	3L_12185525_SNP [dm3] 3L_12192425_SNP [dm6]	C	T	2.526e^-6	0.395	SPLICE_SITE_ACCEPTOR thoc6 SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6 INTRON thoc6
2L	15641089	2L_15641089_SNP [dm3] 2L_15641089_SNP [dm6]	A	C	3.196e^-6	0.441	INTERGENIC
3R	26260744	3R_26260744_SNP [dm3] 3R_30435022_SNP [dm6]	T	G	3.289e^-6	0.441	UTR_3_PRIME CG15534 DOWNSTREAM CG15537
3L	11017325	3L_11017325_SNP [dm3] 3L_11024225_SNP [dm6]	C	G	3.730e^-6	0.45	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	2389228	2L_2389228_SNP [dm3] 2L_2389228_SNP [dm6]	A	C	4.135e^-6	0.45	DOWNSTREAM CG43750 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11015542	3L_11015542_SNP [dm3] 3L_11022442_SNP [dm6]	A	C	4.159e^-6	0.45	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8608143	3L_8608143_SNP [dm3] 3L_8615043_SNP [dm6]	C	T	4.314e^-6	0.45	SYNONYMOUS_CODING CG6282
3L	12458544	3L_12458544_SNP [dm3] 3L_12465444_SNP [dm6]	G	T	4.907e^-6	0.484	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	12464851	3L_12464851_INS [dm3] 3L_12471751_INS [dm6]	G	GG	5.460e^-6	0.512	UTR_5_PRIME CG10616	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	11015320	3L_11015320_INS [dm3] 3L_11022220_INS [dm6]	T	TT	6.695e^-6	0.598	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19378294	3L_19378294_SNP [dm3] 3L_19385194_SNP [dm6]	A	G	7.577e^-6	0.6	INTRON CG32206
3L	12163807	3L_12163807_SNP [dm3] 3L_12170707_SNP [dm6]	T	C	8.049e^-6	0.6	INTRON Rh7
3L	12185514	3L_12185514_SNP [dm3] 3L_12192414_SNP [dm6]	G	T	8.676e^-6	0.6	NON_SYNONYMOUS_CODING Est-P UTR_3_PRIME thoc6 DOWNSTREAM thoc6
3L	12186824	3L_12186824_SNP [dm3] 3L_12193724_SNP [dm6]	A	G	9.551e^-6	0.6	UPSTREAM thoc6 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
3L	13466794	3L_13466794_SNP [dm3] 3L_13473694_SNP [dm6]	G	C	9.615e^-6	0.6	INTRON CG10089
3R	24700490	3R_24700490_SNP [dm3] 3R_28874768_SNP [dm6]	C	T	1.023e^-5	0.6	SYNONYMOUS_CODING CG14529 UPSTREAM CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27166882	3R_27166882_INS [dm3] 3R_31341160_INS [dm6]	C	CGC	1.028e^-5	0.6	INTRON CG34347
3R	9252601	3R_9252601_SNP [dm3] 3R_13426879_SNP [dm6]	T	C	1.073e^-5	0.6	SYNONYMOUS_CODING Act87E UPSTREAM CR45591	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14463787	2L_14463787_SNP [dm3] 2L_14463787_SNP [dm6]	A	C	1.106e^-5	0.6	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	26260569	3R_26260569_SNP [dm3] 3R_30434847_SNP [dm6]	G	C	1.129e^-5	0.6	DOWNSTREAM CG15537 INTRON CG15534
3L	9272066	3L_9272066_SNP [dm3] 3L_9278966_SNP [dm6]	G	A	1.161e^-5	0.6	INTRON GluRIB
3L	12186593	3L_12186593_SNP [dm3] 3L_12193493_SNP [dm6]	A	G	1.162e^-5	0.6	SPLICE_SITE_REGION thoc6 SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
X	15535875	X_15535875_SNP [dm3] X_15641842_SNP [dm6]	A	G	1.165e^-5	0.6	EXON CR44893
3L	11018550	3L_11018550_INS [dm3] 3L_11025450_INS [dm6]	G	GCT	1.190e^-5	0.6	UPSTREAM CG32079 DOWNSTREAM Fad2 INTERGENIC
2L	10730671	2L_10730671_SNP [dm3] 2L_10730671_SNP [dm6]	T	C	1.215e^-5	0.6	DOWNSTREAM CG6443 & 1 other INTRON CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11017014	3L_11017014_SNP [dm3] 3L_11023914_SNP [dm6]	C	A	1.318e^-5	0.6	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24821956	3R_24821956_SNP [dm3] 3R_28996234_SNP [dm6]	C	T	1.339e^-5	0.6	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11943429	2R_11943429_SNP [dm3] 2R_16055924_SNP [dm6]	C	G	1.344e^-5	0.6	INTRON CG8405
3L	12464869	3L_12464869_SNP [dm3] 3L_12471769_SNP [dm6]	A	T	1.387e^-5	0.6	UTR_5_PRIME CG10616	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	26260564	3R_26260564_SNP [dm3] 3R_30434842_SNP [dm6]	G	A	1.393e^-5	0.6	DOWNSTREAM CG15537 INTRON CG15534
3R	25006176	3R_25006176_SNP [dm3] 3R_29180454_SNP [dm6]	C	A	1.416e^-5	0.6	INTRON CG14509
3L	11017214	3L_11017214_SNP [dm3] 3L_11024114_SNP [dm6]	A	G	1.424e^-5	0.6	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18256181	2L_18256181_SNP [dm3] 2L_18256181_SNP [dm6]	G	T	1.454e^-5	0.6	UPSTREAM CR43408 INTRON CG42750	TF binding site mE1_TFBS_HSA
3L	11017013	3L_11017013_SNP [dm3] 3L_11023913_SNP [dm6]	C	A	1.544e^-5	0.6	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22322786	3R_22322786_SNP [dm3] 3R_26497064_SNP [dm6]	T	C	1.635e^-5	0.6	INTRON plum
3R	27207574	3R_27207574_SNP [dm3] 3R_31381852_SNP [dm6]	G	A	1.648e^-5	0.6	UPSTREAM CG1607 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16391341	2L_16391341_SNP [dm3] 2L_16391341_SNP [dm6]	A	C	1.652e^-5	0.6	INTERGENIC
2L	14478337	2L_14478337_SNP [dm3] 2L_14478337_SNP [dm6]	C	T	1.657e^-5	0.6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	24947652	3R_24947652_SNP [dm3] 3R_29121930_SNP [dm6]	A	G	1.660e^-5	0.6	INTRON yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11967156	3L_11967156_SNP [dm3] 3L_11974056_SNP [dm6]	T	C	1.742e^-5	0.6	UPSTREAM CG42397 & 1 other INTERGENIC
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	1.759e^-5	0.6	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1847616	3L_1847616_SNP [dm3] 3L_1847616_SNP [dm6]	A	G	1.761e^-5	0.6	INTERGENIC
3L	12462225	3L_12462225_SNP [dm3] 3L_12469125_SNP [dm6]	C	A	1.840e^-5	0.6	UTR_3_PRIME CG32102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
X	17620747	X_17620747_SNP [dm3] X_17726714_SNP [dm6]	T	A	1.843e^-5	0.6	INTRON CG42684
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	1.905e^-5	0.6	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16473291	3R_16473291_SNP [dm3] 3R_20647569_SNP [dm6]	A	G	1.961e^-5	0.6	SYNONYMOUS_CODING GluRIIE
2R	13531220	2R_13531220_SNP [dm3] 2R_17643715_SNP [dm6]	C	T	1.972e^-5	0.6	INTERGENIC
3R	9252571	3R_9252571_SNP [dm3] 3R_13426849_SNP [dm6]	T	C	1.978e^-5	0.6	SYNONYMOUS_CODING Act87E UPSTREAM CR45591	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9459061	3R_9459061_SNP [dm3] 3R_13633339_SNP [dm6]	G	C	2.030e^-5	0.6	SYNONYMOUS_CODING CG10841
3R	17935131	3R_17935131_SNP [dm3] 3R_22109409_SNP [dm6]	C	T	2.045e^-5	0.6	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8145393	2R_8145393_SNP [dm3] 2R_12257888_SNP [dm6]	A	T	2.058e^-5	0.6	INTRON Vha36-2	TF binding site mE1_TFBS_cad
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	2.068e^-5	0.6	SYNONYMOUS_CODING msps
3L	12184935	3L_12184935_SNP [dm3] 3L_12191835_SNP [dm6]	T	A	2.114e^-5	0.6	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
X	10119522	X_10119522_SNP [dm3] X_10225489_SNP [dm6]	C	T	2.117e^-5	0.6	SYNONYMOUS_CODING CG34408	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3735862	3L_3735862_SNP [dm3] 3L_3735862_SNP [dm6]	T	G	2.187e^-5	0.6	INTRON CG32264
2L	8989393	2L_8989393_SNP [dm3] 2L_8989393_SNP [dm6]	G	A	2.195e^-5	0.6	UTR_5_PRIME rost UPSTREAM rost
3L	12063199	3L_12063199_SNP [dm3] 3L_12070099_SNP [dm6]	G	C	2.253e^-5	0.6	NON_SYNONYMOUS_CODING Sema-5c	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20704871	3R_20704871_INS [dm3] 3R_24879149_INS [dm6]	T	TGC	2.309e^-5	0.6	DOWNSTREAM CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11967139	3L_11967139_SNP [dm3] 3L_11974039_SNP [dm6]	A	T	2.353e^-5	0.6	UPSTREAM CG42397 & 1 other INTERGENIC
3L	12185838	3L_12185838_SNP [dm3] 3L_12192738_SNP [dm6]	G	A	2.363e^-5	0.6	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P
3R	14361245	3R_14361245_SNP [dm3] 3R_18535523_SNP [dm6]	A	T	2.377e^-5	0.6	INTRON fru
3L	12185848	3L_12185848_SNP [dm3] 3L_12192748_SNP [dm6]	T	C	2.378e^-5	0.6	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site mE1_TFBS_sens
2L	2767212	2L_2767212_SNP [dm3] 2L_2767212_SNP [dm6]	T	C	2.445e^-5	0.6	UTR_3_PRIME aph-1 UPSTREAM Taf10 DOWNSTREAM Taf10b & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	12069108	3L_12069108_INS [dm3] 3L_12076008_INS [dm6]	G	GCAGTTG	2.459e^-5	0.6	INTRON Sema-5c
3R	26260573	3R_26260573_SNP [dm3] 3R_30434851_SNP [dm6]	T	A	2.481e^-5	0.6	DOWNSTREAM CG15537 INTRON CG15534
3R	9251965	3R_9251965_SNP [dm3] 3R_13426243_SNP [dm6]	A	C	2.481e^-5	0.6	UPSTREAM Act87E & 1 other INTRON Act87E	TF binding site BDTNP1_TFBS_twi
3R	16473297	3R_16473297_SNP [dm3] 3R_20647575_SNP [dm6]	A	G	2.514e^-5	0.6	SYNONYMOUS_CODING GluRIIE
3R	11883481	3R_11883481_SNP [dm3] 3R_16057759_SNP [dm6]	T	C	2.527e^-5	0.6	SYNONYMOUS_CODING msps
3R	24954614	3R_24954614_SNP [dm3] 3R_29128892_SNP [dm6]	A	T	2.574e^-5	0.6	DOWNSTREAM CG11880 INTRON dgt6	TF binding site mE1_TFBS_cad
3R	24954655	3R_24954655_SNP [dm3] 3R_29128933_SNP [dm6]	T	A	2.614e^-5	0.6	DOWNSTREAM CG11880 INTRON dgt6	TF binding site mE1_TFBS_cad
2L	14478561	2L_14478561_SNP [dm3] 2L_14478561_SNP [dm6]	T	A	2.623e^-5	0.6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	16025035	2L_16025035_SNP [dm3] 2L_16025035_SNP [dm6]	A	G	2.702e^-5	0.611	INTRON beat-Ic
3R	9748163	3R_9748163_SNP [dm3] 3R_13922441_SNP [dm6]	G	T	2.751e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15641105	2L_15641105_DEL [dm3] 2L_15641105_DEL [dm6]	CTGCCATCTCCAATCT...	C	2.768e^-5	0.611	INTERGENIC
2L	14478322	2L_14478322_SNP [dm3] 2L_14478322_SNP [dm6]	G	C	2.801e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	6594384	3R_6594384_SNP [dm3] 3R_10768662_SNP [dm6]	T	G	2.915e^-5	0.621	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta DOWNSTREAM CG45076	TF binding site mE1_TFBS_chinmo
2L	6932879	2L_6932879_SNP [dm3] 2L_6932879_SNP [dm6]	A	G	2.941e^-5	0.621	SYNONYMOUS_CODING CG18304 DOWNSTREAM Hrb27C & 1 other	TF binding site mE1_TFBS_cad
3L	20660939	3L_20660939_SNP [dm3] 3L_20667839_SNP [dm6]	C	A	2.960e^-5	0.621	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14618938	3R_14618938_DEL [dm3] 3R_18793216_DEL [dm6]	TG	T	3.006e^-5	0.621	UPSTREAM CG7720 INTRON CG7720
2L	434331	2L_434331_SNP [dm3] 2L_434331_SNP [dm6]	G	T	3.013e^-5	0.621	INTRON ex
3R	6628348	3R_6628348_SNP [dm3] 3R_10802626_SNP [dm6]	T	A	3.052e^-5	0.622	INTRON CG14692
3L	11020960	3L_11020960_SNP [dm3] 3L_11027860_SNP [dm6]	G	A	3.169e^-5	0.633	NON_SYNONYMOUS_CODING CG32081 DOWNSTREAM CG32079
3R	24954354	3R_24954354_SNP [dm3] 3R_29128632_SNP [dm6]	T	G	3.173e^-5	0.633	UTR_3_PRIME dgt6 DOWNSTREAM CG11880
2L	2767411	2L_2767411_SNP [dm3] 2L_2767411_SNP [dm6]	A	G	3.234e^-5	0.638	SYNONYMOUS_CODING Taf10b UPSTREAM Taf10 DOWNSTREAM aph-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	9054881	3L_9054881_DEL [dm3] 3L_9061781_DEL [dm6]	TAACAAAGTGC...	T	3.443e^-5	0.653	INTRON Argk
3L	11596613	3L_11596613_SNP [dm3] 3L_11603513_SNP [dm6]	A	G	3.456e^-5	0.653	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12185047	3L_12185047_SNP [dm3] 3L_12191947_SNP [dm6]	G	A	3.503e^-5	0.653	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
3R	16474292	3R_16474292_SNP [dm3] 3R_20648570_SNP [dm6]	C	G	3.510e^-5	0.653	NON_SYNONYMOUS_CODING GluRIIE DOWNSTREAM GluRIID
2L	16497795	2L_16497795_SNP [dm3] 2L_16497795_SNP [dm6]	A	G	3.512e^-5	0.653	INTRON Tpr2
X	2705469	X_2705469_SNP [dm3] X_2811436_SNP [dm6]	G	T	3.515e^-5	0.653	DOWNSTREAM CG12498 INTRON kirre
2L	14463801	2L_14463801_SNP [dm3] 2L_14463801_SNP [dm6]	G	A	3.712e^-5	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Kr
3L	11004960	3L_11004960_SNP [dm3] 3L_11011860_SNP [dm6]	A	T	3.751e^-5	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	12411837	2L_12411837_SNP [dm3] 2L_12411837_SNP [dm6]	T	A	3.759e^-5	0.663	INTRON vir-1
3L	12185769	3L_12185769_SNP [dm3] 3L_12192669_SNP [dm6]	A	T	3.788e^-5	0.663	NON_SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P
3R	11885437	3R_11885437_SNP [dm3] 3R_16059715_SNP [dm6]	C	T	3.801e^-5	0.663	DOWNSTREAM CG10185 INTRON msps
3R	12447512	3R_12447512_SNP [dm3] 3R_16621790_SNP [dm6]	G	C	3.802e^-5	0.663	NON_SYNONYMOUS_CODING CG14893 DOWNSTREAM CG14905
3L	11967127	3L_11967127_SNP [dm3] 3L_11974027_SNP [dm6]	G	A	3.866e^-5	0.663	UPSTREAM CG42397 & 1 other INTERGENIC
3R	20991232	3R_20991232_DEL [dm3] 3R_25165510_DEL [dm6]	AT	A	3.893e^-5	0.663	INTERGENIC
3R	11885042	3R_11885042_SNP [dm3] 3R_16059320_SNP [dm6]	T	C	3.915e^-5	0.663	SYNONYMOUS_CODING msps
3R	20380744	3R_20380744_SNP [dm3] 3R_24555022_SNP [dm6]	G	A	3.977e^-5	0.663	SYNONYMOUS_CODING Esyt2 UPSTREAM tRNA:D:96A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	1514439	3L_1514439_SNP [dm3] 3L_1514439_SNP [dm6]	C	A	3.981e^-5	0.663	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	23030891	3R_23030891_SNP [dm3] 3R_27205169_SNP [dm6]	C	A	4.021e^-5	0.663	INTERGENIC	regulatory region REDfly_CRMs
3L	6820480	3L_6820480_SNP [dm3] 3L_6827380_SNP [dm6]	G	C	4.032e^-5	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	10822565	X_10822565_SNP [dm3] X_10928532_SNP [dm6]	A	T	4.074e^-5	0.665	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12144131	3L_12144131_SNP [dm3] 3L_12151031_SNP [dm6]	T	C	4.130e^-5	0.668	DOWNSTREAM eap INTRON Nrx-IV	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	6590332	3R_6590332_SNP [dm3] 3R_10764610_SNP [dm6]	C	A	4.269e^-5	0.669	INTRON Cap-H2
3R	8148525	3R_8148525_SNP [dm3] 3R_12322803_SNP [dm6]	T	A	4.279e^-5	0.669	UPSTREAM CG10013 & 1 other INTERGENIC
2L	3166100	2L_3166100_SNP [dm3] 2L_3166100_SNP [dm6]	T	C	4.313e^-5	0.669	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10780391	3R_10780391_SNP [dm3] 3R_14954669_SNP [dm6]	C	A	4.331e^-5	0.669	INTERGENIC
2L	3166059	2L_3166059_SNP [dm3] 2L_3166059_SNP [dm6]	T	C	4.353e^-5	0.669	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	9548726	3R_9548726_DEL [dm3] 3R_13723004_DEL [dm6]	TA	T	4.365e^-5	0.669	INTRON CG34383
2L	17157063	2L_17157063_SNP [dm3] 2L_17157063_SNP [dm6]	A	G	4.399e^-5	0.669	INTRON beat-IIIa & 1 other
X	11320702	X_11320702_SNP [dm3] X_11426669_SNP [dm6]	C	A	4.427e^-5	0.669	INTRON Gs2	TF binding site BDTNP1_TFBS_dl
3L	11004999	3L_11004999_SNP [dm3] 3L_11011899_SNP [dm6]	T	C	4.460e^-5	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	13714591	3R_13714591_SNP [dm3] 3R_17888869_SNP [dm6]	C	T	4.673e^-5	0.688	INTRON Rim
2L	435921	2L_435921_SNP [dm3] 2L_435921_SNP [dm6]	G	A	4.676e^-5	0.688	INTRON ex	TF binding site mE1_TFBS_chinmo
3R	24819100	3R_24819100_SNP [dm3] 3R_28993378_SNP [dm6]	G	A	4.714e^-5	0.688	INTRON wat	TF binding site mE1_TFBS_HSA
3L	9055438	3L_9055438_SNP [dm3] 3L_9062338_SNP [dm6]	A	G	4.734e^-5	0.688	SYNONYMOUS_CODING Argk UTR_5_PRIME Argk INTRON Argk
X	4499472	X_4499472_INS [dm3] X_4605439_INS [dm6]	T	TT	4.772e^-5	0.689	INTRON CR32773
3R	10139004	3R_10139004_SNP [dm3] 3R_14313282_SNP [dm6]	T	C	4.828e^-5	0.691	SYNONYMOUS_CODING CG31321
2L	444884	2L_444884_SNP [dm3] 2L_444884_SNP [dm6]	C	T	4.870e^-5	0.692	SYNONYMOUS_CODING ex	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15205758	2L_15205758_SNP [dm3] 2L_15205758_SNP [dm6]	G	T	4.906e^-5	0.692	INTERGENIC
2R	8131292	2R_8131292_SNP [dm3] 2R_12243787_SNP [dm6]	G	C	5.013e^-5	0.698	DOWNSTREAM CG43244 & 1 other INTERGENIC
2R	7192077	2R_7192077_SNP [dm3] 2R_11304572_SNP [dm6]	A	T	5.022e^-5	0.698	DOWNSTREAM Fpps INTRON CG7741	TF binding site mE1_TFBS_sens
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	5.066e^-5	0.699	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
2R	6594685	2R_6594685_SNP [dm3] 2R_10707180_SNP [dm6]	G	A	5.114e^-5	0.7	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
X	8659675	X_8659675_INS [dm3] X_8765642_INS [dm6]	A	ATTCTCATTCCCA...	5.175e^-5	0.703	INTRON Lim1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11656813	3L_11656813_SNP [dm3] 3L_11663713_SNP [dm6]	A	C	5.375e^-5	0.71	INTRON CG32085	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23666426	3R_23666426_SNP [dm3] 3R_27840704_SNP [dm6]	A	G	5.392e^-5	0.71	INTRON CG34353
2L	3166083	2L_3166083_SNP [dm3] 2L_3166083_SNP [dm6]	T	C	5.394e^-5	0.71	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11919167	2L_11919167_SNP [dm3] 2L_11919167_SNP [dm6]	A	C	5.452e^-5	0.71	INTRON Pde1c
3R	27081739	3R_27081739_SNP [dm3] 3R_31256017_SNP [dm6]	G	A	5.540e^-5	0.71	INTRON spn-F	TF binding site mE1_TFBS_cad
3R	9251810	3R_9251810_DEL [dm3] 3R_13426088_DEL [dm6]	TT	T	5.600e^-5	0.71	UPSTREAM Act87E INTRON Act87E EXON CR45591	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11885421	3R_11885421_SNP [dm3] 3R_16059699_SNP [dm6]	C	T	5.658e^-5	0.71	DOWNSTREAM CG10185 INTRON msps
3R	6627087	3R_6627087_SNP [dm3] 3R_10801365_SNP [dm6]	G	C	5.673e^-5	0.71	SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	6820495	3L_6820495_SNP [dm3] 3L_6827395_SNP [dm6]	T	C	5.673e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11950647	3L_11950647_SNP [dm3] 3L_11957547_SNP [dm6]	A	G	5.681e^-5	0.71	UPSTREAM CG43294 DOWNSTREAM CG7248 INTRON CG11570
3R	20898816	3R_20898816_SNP [dm3] 3R_25073094_SNP [dm6]	A	G	5.703e^-5	0.71	SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	5.756e^-5	0.71	INTRON CG14877
3R	7751030	3R_7751030_SNP [dm3] 3R_11925308_SNP [dm6]	T	A	5.800e^-5	0.71	INTRON Cad87A
2R	11856976	2R_11856976_SNP [dm3] 2R_15969471_SNP [dm6]	C	T	5.820e^-5	0.71	NON_SYNONYMOUS_CODING Strn-Mlck
3R	14618936	3R_14618936_SNP [dm3] 3R_18793214_SNP [dm6]	T	C	5.825e^-5	0.71	UPSTREAM CG7720 INTRON CG7720
3L	8215552	3L_8215552_SNP [dm3] 3L_8222452_SNP [dm6]	A	T	5.826e^-5	0.71	INTRON CG13678	TF binding site mE1_TFBS_cad
2L	2767296	2L_2767296_SNP [dm3] 2L_2767296_SNP [dm6]	A	C	5.868e^-5	0.71	UTR_3_PRIME Taf10b UPSTREAM Taf10 DOWNSTREAM aph-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	24946504	3R_24946504_DEL [dm3] 3R_29120782_DEL [dm6]	GT	C	5.914e^-5	0.711	INTRON yem	TF binding site mE1_TFBS_chinmo
3L	12458612	3L_12458612_SNP [dm3] 3L_12465512_SNP [dm6]	G	A	6.078e^-5	0.711	INTRON eyg	TF binding site mE1_TFBS_chinmo
3L	15042229	3L_15042229_DEL [dm3] 3L_15049129_DEL [dm6]	AA	A	6.131e^-5	0.711	DOWNSTREAM CG43678 & 1 other INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi
2R	18740246	2R_18740246_SNP [dm3] 2R_22852723_SNP [dm6]	G	C	6.158e^-5	0.711	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14128920	2R_14128920_SNP [dm3] 2R_18241415_SNP [dm6]	G	A	6.177e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11885416	3R_11885416_SNP [dm3] 3R_16059694_SNP [dm6]	C	T	6.177e^-5	0.711	DOWNSTREAM CG10185 INTRON msps
3L	11617086	3L_11617086_SNP [dm3] 3L_11623986_SNP [dm6]	C	T	6.187e^-5	0.711	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
3L	1514536	3L_1514536_SNP [dm3] 3L_1514536_SNP [dm6]	C	G	6.271e^-5	0.711	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da
2R	12866198	2R_12866198_SNP [dm3] 2R_16978693_SNP [dm6]	T	C	6.317e^-5	0.711	INTRON Cbp53E
X	2887552	X_2887552_SNP [dm3] X_2993519_SNP [dm6]	T	C	6.394e^-5	0.711	INTRON kirre
2R	17649895	2R_17649895_DEL [dm3] 2R_21762390_DEL [dm6]	TGTATGTAT	T	6.420e^-5	0.711	DOWNSTREAM CR43983 INTERGENIC
3R	15074051	3R_15074051_DEL [dm3] 3R_19248329_DEL [dm6]	CG	C	6.443e^-5	0.711	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11173865	3L_11173865_DEL [dm3] 3L_11180765_DEL [dm6]	AC	T	6.458e^-5	0.711	INTRON GlcAT-P
3R	11861597	3R_11861597_INS [dm3] 3R_16035875_INS [dm6]	G	GG	6.492e^-5	0.711	INTRON pnr
3L	12487143	3L_12487143_SNP [dm3] 3L_12494043_SNP [dm6]	T	G	6.526e^-5	0.711	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	15736082	2L_15736082_SNP [dm3] 2L_15736082_SNP [dm6]	A	G	6.551e^-5	0.711	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7102560	2L_7102560_SNP [dm3] 2L_7102560_SNP [dm6]	G	A	6.552e^-5	0.711	INTRON Pvf3
3R	11883598	3R_11883598_SNP [dm3] 3R_16057876_SNP [dm6]	T	C	6.573e^-5	0.711	SYNONYMOUS_CODING msps
3L	9862039	3L_9862039_SNP [dm3] 3L_9868939_SNP [dm6]	T	C	6.598e^-5	0.711	SPLICE_SITE_REGION CG8108 INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11538060	3L_11538060_SNP [dm3] 3L_11544960_SNP [dm6]	G	A	6.722e^-5	0.719	INTRON Mob2
X	17620828	X_17620828_SNP [dm3] X_17726795_SNP [dm6]	A	G	6.743e^-5	0.719	INTRON CG42684
2L	20755893	2L_20755893_SNP [dm3] 2L_20755893_SNP [dm6]	C	T	6.823e^-5	0.719	INTRON CG9323	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15073442	3R_15073442_SNP [dm3] 3R_19247720_SNP [dm6]	T	C	6.848e^-5	0.719	INTRON CG5217
X	18821464	X_18821464_SNP [dm3] X_18927431_SNP [dm6]	T	G	6.907e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17156972	2L_17156972_SNP [dm3] 2L_17156972_SNP [dm6]	T	C	6.908e^-5	0.719	INTRON beat-IIIa & 1 other
X	17018263	X_17018263_SNP [dm3] X_17124230_SNP [dm6]	G	A	6.979e^-5	0.719	INTRON CG5004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14618738	3R_14618738_SNP [dm3] 3R_18793016_SNP [dm6]	A	T	7.012e^-5	0.719	UPSTREAM CG7720 INTRON CG7720
2R	6542934	2R_6542934_SNP [dm3] 2R_10655429_SNP [dm6]	A	G	7.072e^-5	0.719	INTERGENIC
2L	451889	2L_451889_SNP [dm3] 2L_451889_SNP [dm6]	G	A	7.090e^-5	0.719	UPSTREAM crq INTRON crq	TF binding site mE1_TFBS_inv
2R	14128930	2R_14128930_SNP [dm3] 2R_18241425_SNP [dm6]	T	G	7.102e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7192060	2R_7192060_SNP [dm3] 2R_11304555_SNP [dm6]	T	C	7.198e^-5	0.719	DOWNSTREAM Fpps INTRON CG7741	TF binding site mE1_TFBS_sens
2R	7192016	2R_7192016_SNP [dm3] 2R_11304511_SNP [dm6]	G	A	7.276e^-5	0.719	NON_SYNONYMOUS_CODING CG7741 DOWNSTREAM Fpps	TF binding site mE1_TFBS_sens
2L	16951352	2L_16951352_SNP [dm3] 2L_16951352_SNP [dm6]	C	A	7.324e^-5	0.719	INTERGENIC
2R	7192249	2R_7192249_SNP [dm3] 2R_11304744_SNP [dm6]	T	A	7.341e^-5	0.719	SPLICE_SITE_REGION CG7741 DOWNSTREAM Fpps INTRON CG7741	TF binding site mE1_TFBS_sens
2L	2540083	2L_2540083_SNP [dm3] 2L_2540083_SNP [dm6]	G	A	7.449e^-5	0.719	INTERGENIC
3L	12458614	3L_12458614_SNP [dm3] 3L_12465514_SNP [dm6]	A	C	7.504e^-5	0.719	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	12943599	3R_12943599_SNP [dm3] 3R_17117877_SNP [dm6]	C	T	7.513e^-5	0.719	INTRON cher	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	9054943	3L_9054943_SNP [dm3] 3L_9061843_SNP [dm6]	C	T	7.528e^-5	0.719	INTRON Argk
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	7.531e^-5	0.719	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27124500	3R_27124500_SNP [dm3] 3R_31298778_SNP [dm6]	G	A	7.674e^-5	0.719	INTERGENIC
3L	13466731	3L_13466731_INS [dm3] 3L_13473631_INS [dm6]	A	ATA	7.687e^-5	0.719	INTRON CG10089
2L	14478684	2L_14478684_SNP [dm3] 2L_14478684_SNP [dm6]	C	T	7.703e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	10057053	3R_10057053_SNP [dm3] 3R_14231331_SNP [dm6]	C	T	7.767e^-5	0.719	INTERGENIC
2R	9922327	2R_9922327_SNP [dm3] 2R_14034822_SNP [dm6]	G	A	7.792e^-5	0.719	INTRON mam
3R	13714710	3R_13714710_SNP [dm3] 3R_17888988_SNP [dm6]	C	T	7.801e^-5	0.719	INTRON Rim
2L	3166052	2L_3166052_SNP [dm3] 2L_3166052_SNP [dm6]	T	G	7.807e^-5	0.719	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2099913	2L_2099913_SNP [dm3] 2L_2099913_SNP [dm6]	C	T	7.826e^-5	0.719	INTRON dpr3
3R	7924689	3R_7924689_SNP [dm3] 3R_12098967_SNP [dm6]	A	C	7.887e^-5	0.719	INTRON dpr17	TF binding site mE1_TFBS_HSA
3R	15074686	3R_15074686_SNP [dm3] 3R_19248964_SNP [dm6]	T	A	7.890e^-5	0.719	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
2L	10715588	2L_10715588_SNP [dm3] 2L_10715588_SNP [dm6]	C	T	7.921e^-5	0.719	INTERGENIC
3R	18989952	3R_18989952_DEL [dm3] 3R_23164230_DEL [dm6]	TGT	T	7.976e^-5	0.719	INTERGENIC
3R	9251931	3R_9251931_SNP [dm3] 3R_13426209_SNP [dm6]	A	G	7.977e^-5	0.719	UPSTREAM Act87E & 1 other INTRON Act87E	TF binding site BDTNP1_TFBS_twi
3R	4046644	3R_4046644_SNP [dm3] 3R_8220922_SNP [dm6]	A	G	7.998e^-5	0.719	NON_SYNONYMOUS_CODING CG18249	TF binding site mE1_TFBS_sens
3R	16476543	3R_16476543_SNP [dm3] 3R_20650821_SNP [dm6]	C	G	8.119e^-5	0.719	SYNONYMOUS_CODING GluRIID
3L	11006678	3L_11006678_SNP [dm3] 3L_11013578_SNP [dm6]	A	C	8.137e^-5	0.719	INTERGENIC
3R	11835571	3R_11835571_SNP [dm3] 3R_16009849_SNP [dm6]	A	T	8.172e^-5	0.719	INTRON GATAe
2L	1097426	2L_1097426_SNP [dm3] 2L_1097426_SNP [dm6]	A	G	8.242e^-5	0.719	INTRON CG4629
2R	8975508	2R_8975508_SNP [dm3] 2R_13088003_SNP [dm6]	A	T	8.308e^-5	0.719	INTERGENIC
2L	5717469	2L_5717469_SNP [dm3] 2L_5717469_SNP [dm6]	T	A	8.352e^-5	0.719	SPLICE_SITE_REGION CG34011 UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
3L	5950110	3L_5950110_INS [dm3] 3L_5957010_INS [dm6]	T	TT	8.352e^-5	0.719	INTERGENIC
2L	17157059	2L_17157059_SNP [dm3] 2L_17157059_SNP [dm6]	A	T	8.375e^-5	0.719	INTRON beat-IIIa & 1 other
2L	12336972	2L_12336972_SNP [dm3] 2L_12336972_SNP [dm6]	T	C	8.438e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5336035	2L_5336035_SNP [dm3] 2L_5336035_SNP [dm6]	G	C	8.443e^-5	0.719	UTR_5_PRIME fusl INTRON fusl
3R	15074060	3R_15074060_SNP [dm3] 3R_19248338_SNP [dm6]	G	T	8.448e^-5	0.719	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
3R	16474409	3R_16474409_SNP [dm3] 3R_20648687_SNP [dm6]	A	T	8.477e^-5	0.719	UTR_5_PRIME GluRIIE UTR_3_PRIME GluRIID
3R	12939515	3R_12939515_SNP [dm3] 3R_17113793_SNP [dm6]	T	A	8.528e^-5	0.719	INTRON cher
3R	6283545	3R_6283545_DEL [dm3] 3R_10457823_DEL [dm6]	GC	G	8.531e^-5	0.719	INTERGENIC
X	18132907	X_18132907_SNP [dm3] X_18238874_SNP [dm6]	A	G	8.545e^-5	0.719	INTERGENIC	silencer mE1_HDAC_PRE
3L	8215543	3L_8215543_SNP [dm3] 3L_8222443_SNP [dm6]	T	C	8.638e^-5	0.723	INTRON CG13678	TF binding site mE1_TFBS_cad
3R	12627911	3R_12627911_SNP [dm3] 3R_16802189_SNP [dm6]	G	A	8.688e^-5	0.724	DOWNSTREAM CR45750 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9054549	3L_9054549_SNP [dm3] 3L_9061449_SNP [dm6]	A	G	8.749e^-5	0.724	INTRON Argk
2R	11379158	2R_11379158_SNP [dm3] 2R_15491653_SNP [dm6]	A	T	8.766e^-5	0.724	INTRON CG12964
3R	24721108	3R_24721108_SNP [dm3] 3R_28895386_SNP [dm6]	C	T	8.852e^-5	0.726	INTRON Doa
3L	11656410	3L_11656410_SNP [dm3] 3L_11663310_SNP [dm6]	C	G	8.894e^-5	0.726	INTRON CG32085
2R	7184764	2R_7184764_SNP [dm3] 2R_11297259_SNP [dm6]	T	C	9.010e^-5	0.726	INTRON CG42336	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13130821	3R_13130821_SNP [dm3] 3R_17305099_SNP [dm6]	G	T	9.036e^-5	0.726	INTERGENIC
3L	7935932	3L_7935932_SNP [dm3] 3L_7942832_SNP [dm6]	A	G	9.044e^-5	0.726	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8956431	2L_8956431_SNP [dm3] 2L_8956431_SNP [dm6]	A	G	9.080e^-5	0.726	UPSTREAM CG31886 INTRON CG31886	TF binding site mE1_TFBS_zfh1
2L	14478426	2L_14478426_SNP [dm3] 2L_14478426_SNP [dm6]	T	A	9.114e^-5	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	26699273	3R_26699273_SNP [dm3] 3R_30873551_SNP [dm6]	T	C	9.115e^-5	0.726	DOWNSTREAM CG15546 INTERGENIC
X	10766561	X_10766561_SNP [dm3] X_10872528_SNP [dm6]	C	T	9.132e^-5	0.726	NON_SYNONYMOUS_CODING CG1637 INTRON CG1637	TF binding site mE1_TFBS_cad
2R	7833490	2R_7833490_SNP [dm3] 2R_11945985_SNP [dm6]	C	T	9.203e^-5	0.728	INTRON CG13188
2R	11857018	2R_11857018_SNP [dm3] 2R_15969513_SNP [dm6]	T	C	9.345e^-5	0.736	NON_SYNONYMOUS_CODING Strn-Mlck
2R	7194582	2R_7194582_INS [dm3] 2R_11307077_INS [dm6]	T	TA	9.420e^-5	0.739	UPSTREAM CG7745 INTRON Fpps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	7192350	2R_7192350_SNP [dm3] 2R_11304845_SNP [dm6]	G	T	9.517e^-5	0.74	SYNONYMOUS_CODING CG7741 DOWNSTREAM Fpps	TF binding site mE1_TFBS_sens
2L	436697	2L_436697_SNP [dm3] 2L_436697_SNP [dm6]	T	C	9.559e^-5	0.74	INTRON ex
2R	12214308	2R_12214308_SNP [dm3] 2R_16326803_SNP [dm6]	T	A	9.622e^-5	0.74	SPLICE_SITE_REGION Vha44 INTRON Vha44
3L	1556691	3L_1556691_SNP [dm3] 3L_1556691_SNP [dm6]	T	C	9.644e^-5	0.74	NON_SYNONYMOUS_CODING CG12099	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26261748	3R_26261748_INS [dm3] 3R_30436026_INS [dm6]	A	ACA	9.704e^-5	0.74	DOWNSTREAM CG15534 INTRON CG15537
3R	20898756	3R_20898756_SNP [dm3] 3R_25073034_SNP [dm6]	G	A	9.705e^-5	0.74	SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
3L	7270334	3L_7270334_SNP [dm3] 3L_7277234_SNP [dm6]	T	C	9.756e^-5	0.74	INTRON unc-13-4A
2R	12877254	2R_12877254_SNP [dm3] 2R_16989749_SNP [dm6]	A	G	9.764e^-5	0.74	INTRON Cbp53E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6594070	3R_6594070_SNP [dm3] 3R_10768348_SNP [dm6]	G	T	9.786e^-5	0.74	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta	TF binding site mE1_TFBS_HSA
3R	16474451	3R_16474451_SNP [dm3] 3R_20648729_SNP [dm6]	A	T	9.859e^-5	0.743	UTR_3_PRIME GluRIID UPSTREAM GluRIIE
3R	15074760	3R_15074760_SNP [dm3] 3R_19249038_SNP [dm6]	A	G	9.906e^-5	0.743	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
2L	11919181	2L_11919181_SNP [dm3] 2L_11919181_SNP [dm6]	T	A	9.949e^-5	0.743	INTRON Pde1c
2R	15080219	2R_15080219_SNP [dm3] 2R_19192714_SNP [dm6]	G	A	1.003e^-4	0.746	INTRON hppy
3R	6597779	3R_6597779_SNP [dm3] 3R_10772057_SNP [dm6]	C	A	1.006e^-4	0.746	INTRON CG45076	TF binding site mE1_TFBS_cad
3R	22322724	3R_22322724_SNP [dm3] 3R_26497002_SNP [dm6]	C	T	1.011e^-4	0.746	INTRON plum
3L	13464275	3L_13464275_SNP [dm3] 3L_13471175_SNP [dm6]	A	G	1.016e^-4	0.746	INTRON CG10089	TF binding site mE1_TFBS_cad
2L	8989104	2L_8989104_SNP [dm3] 2L_8989104_SNP [dm6]	C	T	1.019e^-4	0.746	UTR_5_PRIME rost
3R	18591705	3R_18591705_SNP [dm3] 3R_22765983_SNP [dm6]	G	T	1.022e^-4	0.746	SYNONYMOUS_CODING CG4721 DOWNSTREAM CG13841 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad
3R	11882674	3R_11882674_SNP [dm3] 3R_16056952_SNP [dm6]	A	T	1.030e^-4	0.746	INTRON msps
3R	24946433	3R_24946433_SNP [dm3] 3R_29120711_SNP [dm6]	G	C	1.031e^-4	0.746	SYNONYMOUS_CODING yem	TF binding site mE1_TFBS_chinmo
3R	7988054	3R_7988054_SNP [dm3] 3R_12162332_SNP [dm6]	C	A	1.034e^-4	0.746	DOWNSTREAM Cpn INTERGENIC
3L	11655805	3L_11655805_SNP [dm3] 3L_11662705_SNP [dm6]	G	A	1.049e^-4	0.753	INTRON CG32085
2L	2767253	2L_2767253_SNP [dm3] 2L_2767253_SNP [dm6]	T	A	1.056e^-4	0.753	UTR_3_PRIME aph-1 UPSTREAM Taf10 DOWNSTREAM Taf10b & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	25008454	3R_25008454_SNP [dm3] 3R_29182732_SNP [dm6]	C	T	1.059e^-4	0.753	INTRON CG14509
2R	8150194	2R_8150194_SNP [dm3] 2R_12262689_SNP [dm6]	T	G	1.062e^-4	0.753	INTRON Cam	TF binding site BDTNP1_TFBS_dl
3L	3449411	3L_3449411_SNP [dm3] 3L_3449411_SNP [dm6]	C	T	1.069e^-4	0.753	INTRON eIF5B
2R	5860890	2R_5860890_SNP [dm3] 2R_9973385_SNP [dm6]	A	C	1.075e^-4	0.753	DOWNSTREAM CG12134 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18572163	2R_18572163_SNP [dm3] 2R_22684658_SNP [dm6]	T	G	1.082e^-4	0.753	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24946496	3R_24946496_SNP [dm3] 3R_29120774_SNP [dm6]	C	A	1.083e^-4	0.753	INTRON yem	TF binding site mE1_TFBS_chinmo
2L	16398594	2L_16398594_SNP [dm3] 2L_16398594_SNP [dm6]	A	G	1.084e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	24950563	3R_24950563_SNP [dm3] 3R_29124841_SNP [dm6]	C	G	1.084e^-4	0.753	INTRON CG11880
2R	12096370	2R_12096370_DEL [dm3] 2R_16208865_DEL [dm6]	GG	G	1.093e^-4	0.757	INTRON mrj	TF binding site BDTNP1_TFBS_dl
3R	8409015	3R_8409015_SNP [dm3] 3R_12583293_SNP [dm6]	T	G	1.100e^-4	0.759	INTRON Octbeta2R
X	14543118	X_14543118_SNP [dm3] X_14649085_SNP [dm6]	A	G	1.109e^-4	0.762	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27398046	3R_27398046_SNP [dm3] 3R_31572324_SNP [dm6]	C	G	1.118e^-4	0.762	UTR_5_PRIME gammaCOP INTRON gammaCOP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	16739132	3L_16739132_SNP [dm3] 3L_16746032_SNP [dm6]	G	A	1.124e^-4	0.762	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	26895368	3R_26895368_SNP [dm3] 3R_31069646_SNP [dm6]	T	A	1.128e^-4	0.762	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
2R	17190466	2R_17190466_SNP [dm3] 2R_21302961_SNP [dm6]	A	G	1.128e^-4	0.762	INTRON CG42672
2R	14128922	2R_14128922_SNP [dm3] 2R_18241417_SNP [dm6]	C	A	1.133e^-4	0.762	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6178410	3R_6178410_SNP [dm3] 3R_10352688_SNP [dm6]	A	C	1.134e^-4	0.762	INTRON jumu	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23030895	3R_23030895_DEL [dm3] 3R_27205173_DEL [dm6]	TGTAATTACTT...	T	1.154e^-4	0.763	INTERGENIC	regulatory region REDfly_CRMs
3R	24819099	3R_24819099_SNP [dm3] 3R_28993377_SNP [dm6]	A	G	1.154e^-4	0.763	INTRON wat	TF binding site mE1_TFBS_HSA
3R	14050304	3R_14050304_SNP [dm3] 3R_18224582_SNP [dm6]	A	T	1.156e^-4	0.763	SYNONYMOUS_CODING CG7993 UPSTREAM mTerf5 DOWNSTREAM CG7168	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14478360	2L_14478360_SNP [dm3] 2L_14478360_SNP [dm6]	A	C	1.160e^-4	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	21654141	3L_21654141_DEL [dm3] 3L_21661041_DEL [dm6]	AA	A	1.165e^-4	0.763	INTRON CG43980
3R	11689817	3R_11689817_SNP [dm3] 3R_15864095_SNP [dm6]	C	T	1.185e^-4	0.763	INTRON CG31183
3R	11689820	3R_11689820_MNP [dm3] 3R_15864098_MNP [dm6]	CCA	GAT	1.185e^-4	0.763	INTRON CG31183
3R	12627921	3R_12627921_SNP [dm3] 3R_16802199_SNP [dm6]	A	T	1.193e^-4	0.763	DOWNSTREAM CR45750 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9041794	3R_9041794_SNP [dm3] 3R_13216072_SNP [dm6]	C	T	1.194e^-4	0.763	INTERGENIC
2L	14495557	2L_14495557_SNP [dm3] 2L_14495557_SNP [dm6]	G	T	1.196e^-4	0.763	UPSTREAM tRNA:P:35Bd INTERGENIC	TF binding site mE1_TFBS_sens
2L	437171	2L_437171_SNP [dm3] 2L_437171_SNP [dm6]	T	C	1.197e^-4	0.763	INTRON ex
2L	438326	2L_438326_SNP [dm3] 2L_438326_SNP [dm6]	T	A	1.199e^-4	0.763	INTRON ex
3R	11882786	3R_11882786_SNP [dm3] 3R_16057064_SNP [dm6]	C	T	1.200e^-4	0.763	INTRON msps
3L	8610872	3L_8610872_SNP [dm3] 3L_8617772_SNP [dm6]	G	A	1.200e^-4	0.763	SYNONYMOUS_CODING S-Lap1 DOWNSTREAM CG6282
2R	19502356	2R_19502356_SNP [dm3] 2R_23614833_SNP [dm6]	C	T	1.202e^-4	0.763	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2R	7474290	2R_7474290_SNP [dm3] 2R_11586785_SNP [dm6]	G	T	1.212e^-4	0.763	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_sens
3R	9251813	3R_9251813_SNP [dm3] 3R_13426091_SNP [dm6]	C	T	1.221e^-4	0.763	UPSTREAM Act87E INTRON Act87E EXON CR45591	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10644032	3L_10644032_SNP [dm3] 3L_10650932_SNP [dm6]	T	A	1.223e^-4	0.763	INTRON CG32066
3R	11689804	3R_11689804_SNP [dm3] 3R_15864082_SNP [dm6]	T	C	1.228e^-4	0.763	INTRON CG31183
3R	7924728	3R_7924728_SNP [dm3] 3R_12099006_SNP [dm6]	G	T	1.230e^-4	0.763	INTRON dpr17	TF binding site mE1_TFBS_HSA
3R	13131947	3R_13131947_SNP [dm3] 3R_17306225_SNP [dm6]	T	A	1.232e^-4	0.763	INTERGENIC
3L	11178750	3L_11178750_SNP [dm3] 3L_11185650_SNP [dm6]	T	C	1.243e^-4	0.763	INTRON GlcAT-P
2R	8148270	2R_8148270_SNP [dm3] 2R_12260765_SNP [dm6]	A	G	1.246e^-4	0.763	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	6192028	3R_6192028_SNP [dm3] 3R_10366306_SNP [dm6]	G	T	1.248e^-4	0.763	INTRON Rfx
3L	10867767	3L_10867767_SNP [dm3] 3L_10874667_SNP [dm6]	A	T	1.253e^-4	0.763	UTR_3_PRIME tna DOWNSTREAM tna	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8150171	2R_8150171_SNP [dm3] 2R_12262666_SNP [dm6]	C	T	1.254e^-4	0.763	INTRON Cam	TF binding site BDTNP1_TFBS_dl
2L	16389889	2L_16389889_SNP [dm3] 2L_16389889_SNP [dm6]	A	T	1.259e^-4	0.763	INTERGENIC
3R	19113911	3R_19113911_SNP [dm3] 3R_23288189_SNP [dm6]	G	T	1.262e^-4	0.763	UPSTREAM CG17083 DOWNSTREAM CG4434 INTERGENIC
2L	14983675	2L_14983675_SNP [dm3] 2L_14983675_SNP [dm6]	A	T	1.264e^-4	0.763	INTRON mol
3R	13714895	3R_13714895_SNP [dm3] 3R_17889173_SNP [dm6]	T	C	1.267e^-4	0.763	INTRON Rim
3L	12458635	3L_12458635_SNP [dm3] 3L_12465535_SNP [dm6]	G	A	1.268e^-4	0.763	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	10663187	3R_10663187_SNP [dm3] 3R_14837465_SNP [dm6]	G	A	1.279e^-4	0.763	INTRON btsz
2L	19897691	2L_19897691_SNP [dm3] 2L_19897691_SNP [dm6]	G	C	1.279e^-4	0.763	INTRON sick
3L	17815482	3L_17815482_SNP [dm3] 3L_17822382_SNP [dm6]	A	C	1.280e^-4	0.763	UPSTREAM Grd INTRON Ir75c
3L	12163830	3L_12163830_SNP [dm3] 3L_12170730_SNP [dm6]	G	C	1.284e^-4	0.763	INTRON Rh7
3L	9851032	3L_9851032_SNP [dm3] 3L_9857932_SNP [dm6]	G	A	1.301e^-4	0.763	UTR_3_PRIME CG10809
3R	26927054	3R_26927054_SNP [dm3] 3R_31101332_SNP [dm6]	G	T	1.302e^-4	0.763	UPSTREAM CG15553 INTERGENIC
3R	20898755	3R_20898755_SNP [dm3] 3R_25073033_SNP [dm6]	A	T	1.305e^-4	0.763	NON_SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
3L	18779450	3L_18779450_INS [dm3] 3L_18786350_INS [dm6]	A	AG	1.306e^-4	0.763	INTRON ftz-f1
X	11362763	X_11362763_SNP [dm3] X_11468730_SNP [dm6]	A	G	1.306e^-4	0.763	INTRON CG43155
2L	642258	2L_642258_SNP [dm3] 2L_642258_SNP [dm6]	T	C	1.307e^-4	0.763	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8989103	2L_8989103_SNP [dm3] 2L_8989103_SNP [dm6]	C	A	1.320e^-4	0.763	START_GAINED rost UTR_5_PRIME rost
2R	16410049	2R_16410049_SNP [dm3] 2R_20522544_SNP [dm6]	C	T	1.323e^-4	0.763	INTERGENIC
2R	8145421	2R_8145421_SNP [dm3] 2R_12257916_SNP [dm6]	A	G	1.325e^-4	0.763	INTRON Vha36-2	TF binding site mE1_TFBS_cad
3R	15074747	3R_15074747_SNP [dm3] 3R_19249025_SNP [dm6]	G	A	1.331e^-4	0.763	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
2R	18740115	2R_18740115_SNP [dm3] 2R_22852592_SNP [dm6]	A	G	1.333e^-4	0.763	INTRON CG13531	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12411891	2L_12411891_SNP [dm3] 2L_12411891_SNP [dm6]	G	A	1.340e^-4	0.763	INTRON vir-1
2L	4870891	2L_4870891_SNP [dm3] 2L_4870891_SNP [dm6]	C	A	1.344e^-4	0.763	INTRON pog	TF binding site mE1_TFBS_HSA
2L	14501241	2L_14501241_SNP [dm3] 2L_14501241_SNP [dm6]	G	A	1.344e^-4	0.763	INTERGENIC
2L	1611801	2L_1611801_SNP [dm3] 2L_1611801_SNP [dm6]	A	G	1.345e^-4	0.763	SYNONYMOUS_CODING CG14352 UPSTREAM CG31935 DOWNSTREAM RFeSP	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	6136124	3R_6136124_SNP [dm3] 3R_10310402_SNP [dm6]	G	A	1.347e^-4	0.763	SYNONYMOUS_CODING CG6293	TF binding site mE1_TFBS_cad
3L	12183197	3L_12183197_SNP [dm3] 3L_12190097_SNP [dm6]	C	T	1.355e^-4	0.763	SYNONYMOUS_CODING Est-6 UPSTREAM Est-P	TF binding site mE1_TFBS_sens
2R	18316068	2R_18316068_SNP [dm3] 2R_22428563_SNP [dm6]	A	T	1.359e^-4	0.763	INTRON ppk12
2R	12214958	2R_12214958_SNP [dm3] 2R_16327453_SNP [dm6]	G	T	1.363e^-4	0.763	INTRON Vha44
3L	6818219	3L_6818219_SNP [dm3] 3L_6825119_SNP [dm6]	A	T	1.363e^-4	0.763	INTERGENIC
3L	6630176	3L_6630176_DEL [dm3] 3L_6637076_DEL [dm6]	AGCACTTTGATTT...	A	1.368e^-4	0.763	INTERGENIC
3L	9142650	3L_9142650_SNP [dm3] 3L_9149550_SNP [dm6]	A	T	1.374e^-4	0.763	UTR_3_PRIME Rdl
3R	24718506	3R_24718506_SNP [dm3] 3R_28892784_SNP [dm6]	C	T	1.376e^-4	0.763	INTRON Doa	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7985499	3R_7985499_SNP [dm3] 3R_12159777_SNP [dm6]	A	G	1.380e^-4	0.763	INTERGENIC
3L	20682674	3L_20682674_SNP [dm3] 3L_20689574_SNP [dm6]	T	G	1.383e^-4	0.763	INTERGENIC
3L	20683644	3L_20683644_DEL [dm3] 3L_20690544_DEL [dm6]	CGTTC	C	1.388e^-4	0.763	INTERGENIC
2L	8962172	2L_8962172_SNP [dm3] 2L_8962172_SNP [dm6]	T	C	1.394e^-4	0.763	SYNONYMOUS_CODING CG9525 UPSTREAM CG32985
2R	14128839	2R_14128839_SNP [dm3] 2R_18241334_SNP [dm6]	G	T	1.394e^-4	0.763	INTERGENIC
2R	5714209	2R_5714209_SNP [dm3] 2R_9826704_SNP [dm6]	G	T	1.405e^-4	0.763	SYNONYMOUS_CODING dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7191954	2R_7191954_SNP [dm3] 2R_11304449_SNP [dm6]	C	T	1.406e^-4	0.763	NON_SYNONYMOUS_CODING CG7741	TF binding site mE1_TFBS_sens
2R	11957818	2R_11957818_SNP [dm3] 2R_16070313_SNP [dm6]	G	A	1.410e^-4	0.763	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5813392	2L_5813392_SNP [dm3] 2L_5813392_SNP [dm6]	C	T	1.413e^-4	0.763	INTERGENIC
2L	15734499	2L_15734499_SNP [dm3] 2L_15734499_SNP [dm6]	C	A	1.419e^-4	0.763	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	26572640	3R_26572640_SNP [dm3] 3R_30746918_SNP [dm6]	G	A	1.422e^-4	0.763	UPSTREAM Npc2h EXON CR43238
2L	6538674	2L_6538674_SNP [dm3] 2L_6538674_SNP [dm6]	T	G	1.427e^-4	0.763	INTRON eya
X	13721925	X_13721925_SNP [dm3] X_13827892_SNP [dm6]	G	T	1.429e^-4	0.763	INTRON jub
3R	9251894	3R_9251894_INS [dm3] 3R_13426172_INS [dm6]	A	AA	1.436e^-4	0.763	UPSTREAM Act87E INTRON Act87E EXON CR45591	TF binding site BDTNP1_TFBS_twi
3R	9251896	3R_9251896_INS [dm3] 3R_13426174_INS [dm6]	A	ATTTGT	1.436e^-4	0.763	UPSTREAM Act87E INTRON Act87E EXON CR45591	TF binding site BDTNP1_TFBS_twi
3L	19229304	3L_19229304_SNP [dm3] 3L_19236204_SNP [dm6]	T	A	1.445e^-4	0.763	UPSTREAM CG33647 & 1 other INTERGENIC
X	18133504	X_18133504_SNP [dm3] X_18239471_SNP [dm6]	A	T	1.446e^-4	0.763	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA
2R	5778612	2R_5778612_SNP [dm3] 2R_9891107_SNP [dm6]	G	A	1.448e^-4	0.763	UTR_3_PRIME CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
3L	6818137	3L_6818137_SNP [dm3] 3L_6825037_SNP [dm6]	G	C	1.450e^-4	0.763	INTERGENIC
2L	17157043	2L_17157043_SNP [dm3] 2L_17157043_SNP [dm6]	G	C	1.453e^-4	0.763	INTRON beat-IIIa & 1 other
3R	6272794	3R_6272794_DEL [dm3] 3R_10447072_DEL [dm6]	GAAATTAAGCCCC...	G	1.457e^-4	0.763	INTERGENIC
3L	1440799	3L_1440799_SNP [dm3] 3L_1440799_SNP [dm6]	T	C	1.476e^-4	0.769	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3L	3926167	3L_3926167_SNP [dm3] 3L_3926167_SNP [dm6]	C	A	1.477e^-4	0.769	UPSTREAM Eip63F-1 INTRON Eip63F-1
3L	1505191	3L_1505191_SNP [dm3] 3L_1505191_SNP [dm6]	C	A	1.482e^-4	0.769	SYNONYMOUS_CODING cue INTRON Psa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13721914	X_13721914_SNP [dm3] X_13827881_SNP [dm6]	G	A	1.484e^-4	0.769	INTRON jub
2L	15635088	2L_15635088_DEL [dm3] 2L_15635088_DEL [dm6]	AA	A	1.490e^-4	0.769	DOWNSTREAM CG18480 INTERGENIC
2R	7194620	2R_7194620_SNP [dm3] 2R_11307115_SNP [dm6]	A	T	1.493e^-4	0.769	UPSTREAM CG7745 INTRON Fpps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	14619070	3R_14619070_SNP [dm3] 3R_18793348_SNP [dm6]	T	C	1.499e^-4	0.77	UPSTREAM CG7720 INTRON CG7720
3L	9857485	3L_9857485_SNP [dm3] 3L_9864385_SNP [dm6]	C	G	1.504e^-4	0.77	UPSTREAM CG8108 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	1805999	3R_1805999_SNP [dm3] 3R_5980277_SNP [dm6]	G	A	1.509e^-4	0.77	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7743926	3R_7743926_SNP [dm3] 3R_11918204_SNP [dm6]	G	T	1.513e^-4	0.77	INTRON Cad87A
X	8708729	X_8708729_SNP [dm3] X_8814696_SNP [dm6]	T	G	1.515e^-4	0.77	INTERGENIC
3L	19096947	3L_19096947_INS [dm3] 3L_19103847_INS [dm6]	A	AA	1.524e^-4	0.772	INTERGENIC
3R	12627935	3R_12627935_SNP [dm3] 3R_16802213_SNP [dm6]	A	T	1.531e^-4	0.774	DOWNSTREAM CR45751 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16389803	2L_16389803_SNP [dm3] 2L_16389803_SNP [dm6]	G	A	1.536e^-4	0.774	INTERGENIC
3R	6192014	3R_6192014_SNP [dm3] 3R_10366292_SNP [dm6]	T	G	1.539e^-4	0.774	INTRON Rfx
3L	11656321	3L_11656321_SNP [dm3] 3L_11663221_SNP [dm6]	A	T	1.549e^-4	0.777	INTRON CG32085
3L	9862051	3L_9862051_SNP [dm3] 3L_9868951_SNP [dm6]	T	A	1.557e^-4	0.779	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3735843	3L_3735843_SNP [dm3] 3L_3735843_SNP [dm6]	C	T	1.566e^-4	0.781	INTRON CG32264
3R	6186151	3R_6186151_SNP [dm3] 3R_10360429_SNP [dm6]	C	T	1.570e^-4	0.781	UTR_3_PRIME jumu	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
2L	15635096	2L_15635096_SNP [dm3] 2L_15635096_SNP [dm6]	A	G	1.576e^-4	0.782	DOWNSTREAM CG18480 INTERGENIC
3L	9052577	3L_9052577_SNP [dm3] 3L_9059477_SNP [dm6]	C	A	1.591e^-4	0.788	INTRON Argk
X	5352758	X_5352758_DEL [dm3] X_5458725_DEL [dm6]	TGT	T	1.608e^-4	0.79	INTRON SPR
2R	8534563	2R_8534563_SNP [dm3] 2R_12647058_SNP [dm6]	G	C	1.619e^-4	0.79	INTRON CG8785
3R	11882771	3R_11882771_SNP [dm3] 3R_16057049_SNP [dm6]	G	C	1.621e^-4	0.79	INTRON msps
3R	11882689	3R_11882689_SNP [dm3] 3R_16056967_SNP [dm6]	T	A	1.625e^-4	0.79	INTRON msps
3L	9052355	3L_9052355_SNP [dm3] 3L_9059255_SNP [dm6]	A	G	1.626e^-4	0.79	INTRON Argk
3R	8476184	3R_8476184_INS [dm3] 3R_12650462_INS [dm6]	T	TGCTGCAGTAT...	1.628e^-4	0.79	INTRON Dtg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1
X	5971713	X_5971713_SNP [dm3] X_6077680_SNP [dm6]	T	G	1.628e^-4	0.79	UTR_5_PRIME CG4666 UPSTREAM CG4666
2L	7652589	2L_7652589_SNP [dm3] 2L_7652589_SNP [dm6]	T	C	1.633e^-4	0.79	INTRON Slob
X	4496898	X_4496898_SNP [dm3] X_4602865_SNP [dm6]	C	G	1.637e^-4	0.79	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
3L	16306890	3L_16306890_INS [dm3] 3L_16313790_INS [dm6]	A	AA	1.639e^-4	0.79	UPSTREAM CG13062 INTERGENIC
3L	6818004	3L_6818004_SNP [dm3] 3L_6824904_SNP [dm6]	T	A	1.644e^-4	0.791	INTERGENIC	regulatory region REDfly_CRMs
3L	11967519	3L_11967519_SNP [dm3] 3L_11974419_SNP [dm6]	A	C	1.657e^-4	0.794	UPSTREAM CG42397 & 1 other INTERGENIC
3L	9052694	3L_9052694_SNP [dm3] 3L_9059594_SNP [dm6]	G	T	1.660e^-4	0.794	INTRON Argk
3R	24719539	3R_24719539_SNP [dm3] 3R_28893817_SNP [dm6]	C	A	1.677e^-4	0.799	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
2R	3856758	2R_3856758_SNP [dm3] 2R_7969253_SNP [dm6]	C	T	1.678e^-4	0.799	SPLICE_SITE_REGION nito UTR_3_PRIME CG8726 & 1 other
2R	19267294	2R_19267294_SNP [dm3] 2R_23379771_SNP [dm6]	T	C	1.691e^-4	0.802	SYNONYMOUS_CODING yellow-d INTRON CG13551	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16131158	3R_16131158_SNP [dm3] 3R_20305436_SNP [dm6]	A	G	1.693e^-4	0.802	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
3R	24721500	3R_24721500_SNP [dm3] 3R_28895778_SNP [dm6]	A	G	1.700e^-4	0.803	INTRON Doa
3L	12163754	3L_12163754_INS [dm3] 3L_12170654_INS [dm6]	T	TT	1.707e^-4	0.804	INTRON Rh7
X	5971733	X_5971733_SNP [dm3] X_6077700_SNP [dm6]	C	A	1.711e^-4	0.804	UTR_5_PRIME CG4666 UPSTREAM CG4666
2L	1538250	2L_1538250_SNP [dm3] 2L_1538250_SNP [dm6]	C	A	1.727e^-4	0.804	INTERGENIC
3L	11656157	3L_11656157_SNP [dm3] 3L_11663057_SNP [dm6]	T	A	1.728e^-4	0.804	INTRON CG32085
2R	8148264	2R_8148264_SNP [dm3] 2R_12260759_SNP [dm6]	A	G	1.735e^-4	0.804	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	3817228	3L_3817228_SNP [dm3] 3L_3817228_SNP [dm6]	A	T	1.739e^-4	0.804	UPSTREAM Acp63F INTRON Scsalpha
3R	12626442	3R_12626442_SNP [dm3] 3R_16800720_SNP [dm6]	C	G	1.741e^-4	0.804	UPSTREAM CR45751 EXON CR45750	enhancer mE1_CBP_Enhancers
2L	2767586	2L_2767586_SNP [dm3] 2L_2767586_SNP [dm6]	G	C	1.749e^-4	0.804	SYNONYMOUS_CODING Taf10b UPSTREAM Taf10 DOWNSTREAM aph-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12627888	3R_12627888_SNP [dm3] 3R_16802166_SNP [dm6]	T	G	1.755e^-4	0.804	DOWNSTREAM CR45750 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15073405	3R_15073405_SNP [dm3] 3R_19247683_SNP [dm6]	C	G	1.756e^-4	0.804	INTRON CG5217
X	2609794	X_2609794_SNP [dm3] X_2715761_SNP [dm6]	A	G	1.760e^-4	0.804	SYNONYMOUS_CODING CG2694
X	18133937	X_18133937_SNP [dm3] X_18239904_SNP [dm6]	G	A	1.762e^-4	0.804	DOWNSTREAM upd2 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	13178219	3L_13178219_SNP [dm3] 3L_13185119_SNP [dm6]	G	A	1.775e^-4	0.804	INTERGENIC
2L	4191695	2L_4191695_SNP [dm3] 2L_4191695_SNP [dm6]	T	G	1.775e^-4	0.804	INTRON CG3714
2R	14128974	2R_14128974_INS [dm3] 2R_18241469_INS [dm6]	T	TCGCAGT	1.784e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3253006	3L_3253006_SNP [dm3] 3L_3253006_SNP [dm6]	T	A	1.788e^-4	0.804	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11882758	3R_11882758_SNP [dm3] 3R_16057036_SNP [dm6]	C	A	1.794e^-4	0.804	INTRON msps
3L	12710967	3L_12710967_DEL [dm3] 3L_12717867_DEL [dm6]	ATTA	A	1.800e^-4	0.804	INTERGENIC
3L	11656574	3L_11656574_SNP [dm3] 3L_11663474_SNP [dm6]	T	A	1.803e^-4	0.804	INTRON CG32085
3R	6569164	3R_6569164_SNP [dm3] 3R_10743442_SNP [dm6]	C	T	1.806e^-4	0.804	INTRON TkR86C
2L	14422258	2L_14422258_SNP [dm3] 2L_14422258_SNP [dm6]	G	A	1.814e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6628356	3R_6628356_SNP [dm3] 3R_10802634_SNP [dm6]	C	G	1.815e^-4	0.804	INTRON CG14692
3L	11656054	3L_11656054_SNP [dm3] 3L_11662954_SNP [dm6]	C	T	1.820e^-4	0.804	INTRON CG32085
2R	10950684	2R_10950684_SNP [dm3] 2R_15063179_SNP [dm6]	G	A	1.823e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	13467007	3L_13467007_INS [dm3] 3L_13473907_INS [dm6]	A	AA	1.825e^-4	0.804	INTRON CG10089
3R	14723973	3R_14723973_SNP [dm3] 3R_18898251_SNP [dm6]	G	A	1.831e^-4	0.804	UTR_5_PRIME CG14297
2L	15737420	2L_15737420_SNP [dm3] 2L_15737420_SNP [dm6]	A	G	1.842e^-4	0.804	INTRON CycE	regulatory region FlyBase REDfly_CRMs
3R	9047662	3R_9047662_SNP [dm3] 3R_13221940_SNP [dm6]	C	A	1.842e^-4	0.804	INTERGENIC
3L	10914209	3L_10914209_SNP [dm3] 3L_10921109_SNP [dm6]	A	G	1.848e^-4	0.804	INTERGENIC
2R	14129045	2R_14129045_SNP [dm3] 2R_18241540_SNP [dm6]	C	A	1.853e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11293051	3L_11293051_INS [dm3] 3L_11299951_INS [dm6]	T	TG	1.857e^-4	0.804	INTERGENIC
3R	7924629	3R_7924629_SNP [dm3] 3R_12098907_SNP [dm6]	G	C	1.859e^-4	0.804	INTRON dpr17
X	8530718	X_8530718_SNP [dm3] X_8636685_SNP [dm6]	C	A	1.865e^-4	0.804	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	6211322	2L_6211322_SNP [dm3] 2L_6211322_SNP [dm6]	A	G	1.866e^-4	0.804	DOWNSTREAM CG34380 INTERGENIC
3R	25061203	3R_25061203_SNP [dm3] 3R_29235481_SNP [dm6]	A	C	1.873e^-4	0.804	NON_SYNONYMOUS_CODING CG11951 UTR_3_PRIME CG11951 DOWNSTREAM CG15817	TF binding site mE1_TFBS_sens
3R	20898781	3R_20898781_SNP [dm3] 3R_25073059_SNP [dm6]	C	T	1.880e^-4	0.804	NON_SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
3L	9628674	3L_9628674_SNP [dm3] 3L_9635574_SNP [dm6]	T	C	1.888e^-4	0.804	INTRON fry
3L	6818480	3L_6818480_SNP [dm3] 3L_6825380_SNP [dm6]	A	C	1.892e^-4	0.804	INTERGENIC	regulatory region REDfly_CRMs
3L	9304374	3L_9304374_SNP [dm3] 3L_9311274_SNP [dm6]	A	T	1.892e^-4	0.804	INTERGENIC
X	9115874	X_9115874_SNP [dm3] X_9221841_SNP [dm6]	G	A	1.899e^-4	0.804	INTRON t
3R	21293230	3R_21293230_SNP [dm3] 3R_25467508_SNP [dm6]	T	C	1.913e^-4	0.804	INTRON Fur1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11811526	2R_11811526_DEL [dm3] 2R_15924021_DEL [dm6]	AA	A	1.914e^-4	0.804	INTRON bdg	TF binding site mE1_TFBS_cad
2R	12096376	2R_12096376_SNP [dm3] 2R_16208871_SNP [dm6]	G	A	1.915e^-4	0.804	INTRON mrj	TF binding site BDTNP1_TFBS_dl
2R	19502483	2R_19502483_SNP [dm3] 2R_23614960_SNP [dm6]	A	G	1.925e^-4	0.804	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2L	9432470	2L_9432470_SNP [dm3] 2L_9432470_SNP [dm6]	C	T	1.928e^-4	0.804	SYNONYMOUS_CODING scat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3241115	2L_3241115_SNP [dm3] 2L_3241115_SNP [dm6]	C	G	1.931e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20115330	3R_20115330_SNP [dm3] 3R_24289608_SNP [dm6]	G	A	1.945e^-4	0.804	UPSTREAM CG6364 DOWNSTREAM CG6356 INTRON CG34290	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20115336	3R_20115336_SNP [dm3] 3R_24289614_SNP [dm6]	G	C	1.945e^-4	0.804	UPSTREAM CG6364 DOWNSTREAM CG6356 INTRON CG34290	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15814513	2L_15814513_SNP [dm3] 2L_15814513_SNP [dm6]	A	T	1.955e^-4	0.804	INTERGENIC
2L	15288452	2L_15288452_SNP [dm3] 2L_15288452_SNP [dm6]	G	T	1.961e^-4	0.804	INTERGENIC
3L	11023036	3L_11023036_SNP [dm3] 3L_11029936_SNP [dm6]	T	C	1.969e^-4	0.804	DOWNSTREAM CG32081 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8963529	2R_8963529_SNP [dm3] 2R_13076024_SNP [dm6]	T	A	1.972e^-4	0.804	INTRON Drl-2
2R	18175454	2R_18175454_INS [dm3] 2R_22287949_INS [dm6]	T	TT	1.974e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13721841	X_13721841_SNP [dm3] X_13827808_SNP [dm6]	A	T	1.982e^-4	0.804	INTRON jub
X	10795411	X_10795411_SNP [dm3] X_10901378_SNP [dm6]	T	C	1.984e^-4	0.804	NON_SYNONYMOUS_CODING CG15208
2R	8935604	2R_8935604_SNP [dm3] 2R_13048099_SNP [dm6]	A	G	1.990e^-4	0.804	UPSTREAM CG13323 INTERGENIC
3R	15065650	3R_15065650_INS [dm3] 3R_19239928_INS [dm6]	T	TT	1.991e^-4	0.804	INTRON unc79
3L	1555117	3L_1555117_SNP [dm3] 3L_1555117_SNP [dm6]	C	T	1.992e^-4	0.804	SYNONYMOUS_CODING Cct2 DOWNSTREAM CG12099	TF binding site mE1_TFBS_cad
2L	102241	2L_102241_INS [dm3] 2L_102241_INS [dm6]	T	TGT	1.997e^-4	0.804	UPSTREAM CG11377 DOWNSTREAM Zir INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	9078029	3R_9078029_SNP [dm3] 3R_13252307_SNP [dm6]	A	C	2.003e^-4	0.804	INTRON Ace
X	5482483	X_5482483_SNP [dm3] X_5588450_SNP [dm6]	G	T	2.029e^-4	0.804	INTERGENIC
X	5482484	X_5482484_SNP [dm3] X_5588451_SNP [dm6]	T	A	2.029e^-4	0.804	INTERGENIC
X	5482486	X_5482486_SNP [dm3] X_5588453_SNP [dm6]	T	C	2.029e^-4	0.804	INTERGENIC
3R	14361056	3R_14361056_SNP [dm3] 3R_18535334_SNP [dm6]	G	A	2.039e^-4	0.804	INTRON fru
3L	18746714	3L_18746714_SNP [dm3] 3L_18753614_SNP [dm6]	C	A	2.040e^-4	0.804	INTRON ftz-f1
3R	26897145	3R_26897145_SNP [dm3] 3R_31071423_SNP [dm6]	A	T	2.054e^-4	0.804	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
2L	16389787	2L_16389787_SNP [dm3] 2L_16389787_SNP [dm6]	G	T	2.060e^-4	0.804	INTERGENIC
2L	11191327	2L_11191327_SNP [dm3] 2L_11191327_SNP [dm6]	A	T	2.061e^-4	0.804	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5717451	2L_5717451_SNP [dm3] 2L_5717451_SNP [dm6]	A	T	2.067e^-4	0.804	UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
2L	15632264	2L_15632264_DEL [dm3] 2L_15632264_DEL [dm6]	CATCAAC	C	2.070e^-4	0.804	UTR_3_PRIME CG18480
3R	22328023	3R_22328023_SNP [dm3] 3R_26502301_SNP [dm6]	T	A	2.076e^-4	0.804	INTRON plum
3R	14619094	3R_14619094_SNP [dm3] 3R_18793372_SNP [dm6]	A	C	2.077e^-4	0.804	INTRON CG7720
3L	13253739	3L_13253739_SNP [dm3] 3L_13260639_SNP [dm6]	G	C	2.079e^-4	0.804	INTRON caps
X	5482478	X_5482478_SNP [dm3] X_5588445_SNP [dm6]	G	T	2.094e^-4	0.804	INTERGENIC
3R	7989336	3R_7989336_SNP [dm3] 3R_12163614_SNP [dm6]	T	A	2.099e^-4	0.804	NON_SYNONYMOUS_CODING Cpn SPLICE_SITE_REGION Cpn INTRON Cpn
3L	6818398	3L_6818398_SNP [dm3] 3L_6825298_SNP [dm6]	C	A	2.104e^-4	0.804	INTERGENIC
3R	26827442	3R_26827442_SNP [dm3] 3R_31001720_SNP [dm6]	T	G	2.106e^-4	0.804	INTRON 5-HT7
3R	15074741	3R_15074741_SNP [dm3] 3R_19249019_SNP [dm6]	G	A	2.113e^-4	0.804	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
X	11320584	X_11320584_SNP [dm3] X_11426551_SNP [dm6]	C	T	2.113e^-4	0.804	INTRON Gs2	TF binding site BDTNP1_TFBS_dl
2L	10730663	2L_10730663_SNP [dm3] 2L_10730663_SNP [dm6]	C	A	2.116e^-4	0.804	DOWNSTREAM CG6443 & 1 other INTRON CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8145855	2R_8145855_SNP [dm3] 2R_12258350_SNP [dm6]	C	T	2.116e^-4	0.804	SYNONYMOUS_CODING Vha36-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12853844	2R_12853844_SNP [dm3] 2R_16966339_SNP [dm6]	T	C	2.117e^-4	0.804	INTERGENIC
2R	8869953	2R_8869953_SNP [dm3] 2R_12982448_SNP [dm6]	C	T	2.122e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17494377	2L_17494377_SNP [dm3] 2L_17494377_SNP [dm6]	G	A	2.123e^-4	0.804	INTRON qua
2L	17133630	2L_17133630_SNP [dm3] 2L_17133630_SNP [dm6]	G	T	2.132e^-4	0.804	NON_SYNONYMOUS_CODING beat-IIIa UTR_5_PRIME CG34106
3L	9862058	3L_9862058_SNP [dm3] 3L_9868958_SNP [dm6]	T	C	2.134e^-4	0.804	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13532392	2R_13532392_SNP [dm3] 2R_17644887_SNP [dm6]	C	T	2.136e^-4	0.804	INTERGENIC
3L	7481101	3L_7481101_SNP [dm3] 3L_7488001_SNP [dm6]	T	A	2.136e^-4	0.804	DOWNSTREAM mthl6 INTERGENIC
3L	11597288	3L_11597288_SNP [dm3] 3L_11604188_SNP [dm6]	C	A	2.137e^-4	0.804	SYNONYMOUS_CODING CG7368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11201213	3R_11201213_SNP [dm3] 3R_15375491_SNP [dm6]	C	G	2.141e^-4	0.804	UPSTREAM Rbp INTRON Rbp
3L	12179587	3L_12179587_SNP [dm3] 3L_12186487_SNP [dm6]	G	T	2.143e^-4	0.804	INTRON CG6910	TF binding site mE1_TFBS_cad
2L	1611381	2L_1611381_SNP [dm3] 2L_1611381_SNP [dm6]	C	T	2.144e^-4	0.804	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	17229440	2R_17229440_SNP [dm3] 2R_21341935_SNP [dm6]	G	C	2.146e^-4	0.804	UPSTREAM CG15666 DOWNSTREAM dom INTERGENIC
3R	10139076	3R_10139076_SNP [dm3] 3R_14313354_SNP [dm6]	G	A	2.150e^-4	0.804	SYNONYMOUS_CODING CG31321
3R	23030845	3R_23030845_SNP [dm3] 3R_27205123_SNP [dm6]	T	A	2.155e^-4	0.804	INTERGENIC	regulatory region REDfly_CRMs
3L	18775738	3L_18775738_SNP [dm3] 3L_18782638_SNP [dm6]	G	A	2.155e^-4	0.804	INTRON ftz-f1
2L	4803697	2L_4803697_SNP [dm3] 2L_4803697_SNP [dm6]	G	C	2.156e^-4	0.804	INTERGENIC
3R	3395062	3R_3395062_SNP [dm3] 3R_7569340_SNP [dm6]	G	A	2.168e^-4	0.804	DOWNSTREAM CG34127 INTERGENIC
3R	13388662	3R_13388662_SNP [dm3] 3R_17562940_SNP [dm6]	C	T	2.172e^-4	0.804	INTRON Hmx
3R	15424404	3R_15424404_SNP [dm3] 3R_19598682_SNP [dm6]	T	G	2.177e^-4	0.804	INTRON Cpr92A
3R	8111200	3R_8111200_SNP [dm3] 3R_12285478_SNP [dm6]	T	A	2.180e^-4	0.804	INTRON svp
2R	7104715	2R_7104715_SNP [dm3] 2R_11217210_SNP [dm6]	T	A	2.182e^-4	0.804	UTR_3_PRIME shn DOWNSTREAM CG9084
3L	7597272	3L_7597272_DEL [dm3] 3L_7604172_DEL [dm6]	GAATCACCGGGG...	G	2.188e^-4	0.804	UPSTREAM CG33275 INTRON CG33275
2R	12877263	2R_12877263_SNP [dm3] 2R_16989758_SNP [dm6]	G	A	2.191e^-4	0.804	INTRON Cbp53E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17568290	3R_17568290_SNP [dm3] 3R_21742568_SNP [dm6]	T	C	2.196e^-4	0.804	SYNONYMOUS_CODING CG5849	TF binding site mE1_TFBS_sens
2R	8148163	2R_8148163_SNP [dm3] 2R_12260658_SNP [dm6]	G	A	2.197e^-4	0.804	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	15735889	2L_15735889_SNP [dm3] 2L_15735889_SNP [dm6]	C	T	2.199e^-4	0.804	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17620707	X_17620707_SNP [dm3] X_17726674_SNP [dm6]	C	G	2.211e^-4	0.804	INTRON CG42684
2R	17649869	2R_17649869_DEL [dm3] 2R_21762364_DEL [dm6]	GGGAATGGAG	G	2.212e^-4	0.804	DOWNSTREAM CR43983 INTERGENIC
X	6228629	X_6228629_SNP [dm3] X_6334596_SNP [dm6]	C	T	2.213e^-4	0.804	INTERGENIC
3R	6628369	3R_6628369_SNP [dm3] 3R_10802647_SNP [dm6]	A	C	2.217e^-4	0.804	INTRON CG14692
2R	8145392	2R_8145392_SNP [dm3] 2R_12257887_SNP [dm6]	T	A	2.219e^-4	0.804	INTRON Vha36-2	TF binding site mE1_TFBS_cad
3R	14297606	3R_14297606_SNP [dm3] 3R_18471884_SNP [dm6]	A	G	2.223e^-4	0.804	INTRON fru
2R	14128882	2R_14128882_SNP [dm3] 2R_18241377_SNP [dm6]	T	C	2.224e^-4	0.804	INTERGENIC
3R	19659403	3R_19659403_SNP [dm3] 3R_23833681_SNP [dm6]	C	G	2.233e^-4	0.804	INTRON CG34355
X	12416775	X_12416775_SNP [dm3] X_12522742_SNP [dm6]	A	C	2.239e^-4	0.804	INTRON CG43921
3L	19096542	3L_19096542_SNP [dm3] 3L_19103442_SNP [dm6]	C	A	2.242e^-4	0.804	INTERGENIC
3L	11016871	3L_11016871_SNP [dm3] 3L_11023771_SNP [dm6]	C	T	2.249e^-4	0.804	NON_SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	517044	3L_517044_SNP [dm3] 3L_517044_SNP [dm6]	G	C	2.254e^-4	0.804	INTRON klar
3L	16061108	3L_16061108_SNP [dm3] 3L_16068008_SNP [dm6]	T	C	2.256e^-4	0.804	INTRON Mbs	TF binding site mE1_TFBS_cad
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	2.262e^-4	0.804	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2L	8946006	2L_8946006_SNP [dm3] 2L_8946006_SNP [dm6]	A	G	2.264e^-4	0.804	INTRON C1GalTA
2L	8946051	2L_8946051_SNP [dm3] 2L_8946051_SNP [dm6]	G	T	2.264e^-4	0.804	INTRON C1GalTA
3R	15074753	3R_15074753_SNP [dm3] 3R_19249031_SNP [dm6]	A	C	2.270e^-4	0.804	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
3L	18466800	3L_18466800_SNP [dm3] 3L_18473700_SNP [dm6]	A	T	2.276e^-4	0.804	INTERGENIC
2L	2770274	2L_2770274_SNP [dm3] 2L_2770274_SNP [dm6]	A	C	2.279e^-4	0.804	SYNONYMOUS_CODING CG2862 UTR_5_PRIME CG2862 UPSTREAM colt DOWNSTREAM CG15399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	11227601	2R_11227601_SNP [dm3] 2R_15340096_SNP [dm6]	G	T	2.285e^-4	0.804	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_zfh1
3L	10636965	3L_10636965_SNP [dm3] 3L_10643865_SNP [dm6]	G	C	2.287e^-4	0.804	NON_SYNONYMOUS_CODING CG14153 DOWNSTREAM CG14154 INTRON CG32066
2R	14679326	2R_14679326_SNP [dm3] 2R_18791821_SNP [dm6]	C	T	2.292e^-4	0.804	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11882770	3R_11882770_SNP [dm3] 3R_16057048_SNP [dm6]	T	A	2.296e^-4	0.804	INTRON msps
3R	6598184	3R_6598184_DEL [dm3] 3R_10772462_DEL [dm6]	GGCGATG	G	2.300e^-4	0.804	DOWNSTREAM fau & 1 other	TF binding site mE1_TFBS_cad
X	8291967	X_8291967_SNP [dm3] X_8397934_SNP [dm6]	T	G	2.323e^-4	0.804	UTR_5_PRIME CG15345
3L	7461481	3L_7461481_SNP [dm3] 3L_7468381_SNP [dm6]	G	C	2.331e^-4	0.804	UTR_3_PRIME CG42660 & 2 others
2R	15081720	2R_15081720_DEL [dm3] 2R_19194215_DEL [dm6]	AGTGTGG	A	2.334e^-4	0.804	INTRON hppy
3R	14618657	3R_14618657_SNP [dm3] 3R_18792935_SNP [dm6]	G	T	2.335e^-4	0.804	UPSTREAM CG7720 INTRON CG7720
3L	11027292	3L_11027292_SNP [dm3] 3L_11034192_SNP [dm6]	C	T	2.338e^-4	0.804	UPSTREAM CR44547 INTERGENIC
2R	12834893	2R_12834893_SNP [dm3] 2R_16947388_SNP [dm6]	T	G	2.339e^-4	0.804	SYNONYMOUS_CODING CG34190 DOWNSTREAM Vha16-4 & 2 others
3L	10732033	3L_10732033_SNP [dm3] 3L_10738933_SNP [dm6]	C	A	2.354e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16131154	3R_16131154_INS [dm3] 3R_20305432_INS [dm6]	T	TTATTTTAAA	2.361e^-4	0.804	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
2L	1538337	2L_1538337_SNP [dm3] 2L_1538337_SNP [dm6]	C	T	2.367e^-4	0.804	INTERGENIC
3R	16846472	3R_16846472_SNP [dm3] 3R_21020750_SNP [dm6]	A	G	2.384e^-4	0.804	UTR_3_PRIME Rlip DOWNSTREAM CG17278
2L	15735004	2L_15735004_SNP [dm3] 2L_15735004_SNP [dm6]	A	T	2.397e^-4	0.804	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	5003188	2L_5003188_SNP [dm3] 2L_5003188_SNP [dm6]	A	G	2.403e^-4	0.804	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	15781166	3L_15781166_SNP [dm3] 3L_15788066_SNP [dm6]	A	T	2.403e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr
3L	11597146	3L_11597146_SNP [dm3] 3L_11604046_SNP [dm6]	G	A	2.407e^-4	0.804	SYNONYMOUS_CODING CG7368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8917698	X_8917698_SNP [dm3] X_9023665_SNP [dm6]	C	T	2.411e^-4	0.804	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8140764	2R_8140764_SNP [dm3] 2R_12253259_SNP [dm6]	C	T	2.424e^-4	0.804	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9338314	2R_9338314_SNP [dm3] 2R_13450809_SNP [dm6]	C	T	2.427e^-4	0.804	UTR_5_PRIME cbs UPSTREAM cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18204852	2R_18204852_DEL [dm3] 2R_22317347_DEL [dm6]	TT	T	2.434e^-4	0.804	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	10822337	X_10822337_SNP [dm3] X_10928304_SNP [dm6]	A	G	2.439e^-4	0.804	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2532413	3R_2532413_SNP [dm3] 3R_6706691_SNP [dm6]	T	A	2.440e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11856978	2R_11856978_SNP [dm3] 2R_15969473_SNP [dm6]	A	T	2.444e^-4	0.804	SYNONYMOUS_CODING Strn-Mlck
2L	14006624	2L_14006624_SNP [dm3] 2L_14006624_SNP [dm6]	G	A	2.458e^-4	0.804	INTERGENIC
3R	25008853	3R_25008853_SNP [dm3] 3R_29183131_SNP [dm6]	A	G	2.458e^-4	0.804	INTRON CG14509
2R	5862376	2R_5862376_SNP [dm3] 2R_9974871_SNP [dm6]	T	C	2.461e^-4	0.804	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13404989	X_13404989_SNP [dm3] X_13510956_SNP [dm6]	A	T	2.468e^-4	0.804	INTRON Neto
X	17620737	X_17620737_SNP [dm3] X_17726704_SNP [dm6]	G	C	2.469e^-4	0.804	INTRON CG42684
2R	17270543	2R_17270543_SNP [dm3] 2R_21383038_SNP [dm6]	A	G	2.469e^-4	0.804	DOWNSTREAM CG10795 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3979179	3L_3979179_SNP [dm3] 3L_3979179_SNP [dm6]	A	G	2.474e^-4	0.804	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	5196409	X_5196409_SNP [dm3] X_5302376_SNP [dm6]	T	A	2.476e^-4	0.804	DOWNSTREAM CG3323 INTRON CG42749
2L	4137145	2L_4137145_SNP [dm3] 2L_4137145_SNP [dm6]	C	A	2.482e^-4	0.804	INTERGENIC
3R	8476212	3R_8476212_SNP [dm3] 3R_12650490_SNP [dm6]	T	A	2.491e^-4	0.804	INTRON Dtg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	5560604	2L_5560604_SNP [dm3] 2L_5560604_SNP [dm6]	T	C	2.494e^-4	0.804	INTRON GluRIIB
3R	19231019	3R_19231019_SNP [dm3] 3R_23405297_SNP [dm6]	C	T	2.496e^-4	0.804	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
3R	7983984	3R_7983984_SNP [dm3] 3R_12158262_SNP [dm6]	C	T	2.497e^-4	0.804	INTRON dpr15
X	17117373	X_17117373_SNP [dm3] X_17223340_SNP [dm6]	T	A	2.500e^-4	0.804	SYNONYMOUS_CODING CG34327 DOWNSTREAM CG5172
2L	451536	2L_451536_SNP [dm3] 2L_451536_SNP [dm6]	T	G	2.500e^-4	0.804	UPSTREAM crq INTRON crq	TF binding site mE1_TFBS_inv
3R	24946480	3R_24946480_SNP [dm3] 3R_29120758_SNP [dm6]	G	A	2.504e^-4	0.804	INTRON yem	TF binding site mE1_TFBS_chinmo
3R	8476012	3R_8476012_SNP [dm3] 3R_12650290_SNP [dm6]	C	T	2.528e^-4	0.804	INTRON Dtg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
X	8618594	X_8618594_SNP [dm3] X_8724561_SNP [dm6]	C	T	2.530e^-4	0.804	UPSTREAM CR43297 INTERGENIC
X	18135474	X_18135474_SNP [dm3] X_18241441_SNP [dm6]	C	G	2.533e^-4	0.804	SYNONYMOUS_CODING upd2	TF binding site mE1_TFBS_chinmo
3R	15074788	3R_15074788_SNP [dm3] 3R_19249066_SNP [dm6]	G	A	2.545e^-4	0.804	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
3L	21105894	3L_21105894_SNP [dm3] 3L_21112794_SNP [dm6]	T	C	2.546e^-4	0.804	INTRON ko	regulatory region REDfly_CRMs
3L	10709635	3L_10709635_SNP [dm3] 3L_10716535_SNP [dm6]	A	G	2.547e^-4	0.804	INTERGENIC
3L	16306884	3L_16306884_SNP [dm3] 3L_16313784_SNP [dm6]	C	T	2.555e^-4	0.804	UPSTREAM CG13062 INTERGENIC
3R	25076855	3R_25076855_SNP [dm3] 3R_29251133_SNP [dm6]	G	T	2.556e^-4	0.804	UPSTREAM SP1029 DOWNSTREAM stg INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
2L	12035583	2L_12035583_SNP [dm3] 2L_12035583_SNP [dm6]	A	G	2.581e^-4	0.804	SYNONYMOUS_CODING CG18788 DOWNSTREAM Tom70
3R	19323680	3R_19323680_INS [dm3] 3R_23497958_INS [dm6]	C	CT	2.588e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5142498	3L_5142498_SNP [dm3] 3L_5149398_SNP [dm6]	G	T	2.592e^-4	0.804	SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen
X	13404991	X_13404991_SNP [dm3] X_13510958_SNP [dm6]	T	C	2.593e^-4	0.804	INTRON Neto
X	7990051	X_7990051_SNP [dm3] X_8096018_SNP [dm6]	T	A	2.597e^-4	0.804	UTR_3_PRIME CG2258 DOWNSTREAM CG2258
2L	8955919	2L_8955919_SNP [dm3] 2L_8955919_SNP [dm6]	C	T	2.601e^-4	0.804	UPSTREAM CG31886 INTRON CG31886	TF binding site mE1_TFBS_eve
2L	482502	2L_482502_SNP [dm3] 2L_482502_SNP [dm6]	T	C	2.602e^-4	0.804	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8372130	2L_8372130_SNP [dm3] 2L_8372130_SNP [dm6]	C	T	2.602e^-4	0.804	UPSTREAM CG17292 INTRON CG17292
3R	16131152	3R_16131152_SNP [dm3] 3R_20305430_SNP [dm6]	C	A	2.603e^-4	0.804	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
3L	11596536	3L_11596536_SNP [dm3] 3L_11603436_SNP [dm6]	C	T	2.613e^-4	0.804	SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23666429	3R_23666429_SNP [dm3] 3R_27840707_SNP [dm6]	C	G	2.627e^-4	0.804	INTRON CG34353
3R	4049726	3R_4049726_SNP [dm3] 3R_8224004_SNP [dm6]	C	G	2.630e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15626719	3R_15626719_SNP [dm3] 3R_19800997_SNP [dm6]	A	G	2.640e^-4	0.804	INTRON bnl	TF binding site mE1_TFBS_inv
X	5482481	X_5482481_SNP [dm3] X_5588448_SNP [dm6]	T	G	2.641e^-4	0.804	INTERGENIC
3L	455234	3L_455234_SNP [dm3] 3L_455234_SNP [dm6]	C	G	2.647e^-4	0.804	INTRON klar
3L	1561509	3L_1561509_SNP [dm3] 3L_1561509_SNP [dm6]	G	T	2.655e^-4	0.804	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	24702756	3R_24702756_SNP [dm3] 3R_28877034_SNP [dm6]	C	T	2.657e^-4	0.804	SYNONYMOUS_CODING CG14528 DOWNSTREAM CG14523 INTRON CG33203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10744270	2L_10744270_SNP [dm3] 2L_10744270_SNP [dm6]	G	T	2.669e^-4	0.804	UTR_3_PRIME CG17124 UPSTREAM CG6729 DOWNSTREAM CG17124	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5781414	2R_5781414_SNP [dm3] 2R_9893909_SNP [dm6]	T	A	2.670e^-4	0.804	INTRON CG30007
3L	17938214	3L_17938214_SNP [dm3] 3L_17945114_SNP [dm6]	G	A	2.674e^-4	0.804	INTRON CG43174
3L	11597284	3L_11597284_SNP [dm3] 3L_11604184_SNP [dm6]	G	C	2.688e^-4	0.804	SYNONYMOUS_CODING CG7368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11882856	3R_11882856_SNP [dm3] 3R_16057134_SNP [dm6]	T	A	2.689e^-4	0.804	INTRON msps
3L	3762636	3L_3762636_SNP [dm3] 3L_3762636_SNP [dm6]	T	A	2.690e^-4	0.804	INTRON CG32264
3L	12154694	3L_12154694_SNP [dm3] 3L_12161594_SNP [dm6]	A	G	2.691e^-4	0.804	INTRON CG9760
3R	25355125	3R_25355125_SNP [dm3] 3R_29529403_SNP [dm6]	G	T	2.697e^-4	0.804	INTERGENIC
3L	13466841	3L_13466841_SNP [dm3] 3L_13473741_SNP [dm6]	A	G	2.703e^-4	0.804	INTRON CG10089
2R	19393610	2R_19393610_SNP [dm3] 2R_23506087_SNP [dm6]	G	A	2.707e^-4	0.804	DOWNSTREAM CR43794 INTERGENIC
3L	3925410	3L_3925410_SNP [dm3] 3L_3925410_SNP [dm6]	C	T	2.708e^-4	0.804	INTRON Eip63F-1
3R	11882834	3R_11882834_SNP [dm3] 3R_16057112_SNP [dm6]	A	G	2.711e^-4	0.804	INTRON msps
3L	1504861	3L_1504861_SNP [dm3] 3L_1504861_SNP [dm6]	C	T	2.719e^-4	0.804	SYNONYMOUS_CODING cue INTRON Psa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20801759	2L_20801759_INS [dm3] 2L_20801759_INS [dm6]	A	AT	2.723e^-4	0.804	INTRON CG9328	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	12458569	3L_12458569_SNP [dm3] 3L_12465469_SNP [dm6]	A	G	2.727e^-4	0.804	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	12458571	3L_12458571_SNP [dm3] 3L_12465471_SNP [dm6]	A	T	2.727e^-4	0.804	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	12458590	3L_12458590_DEL [dm3] 3L_12465490_DEL [dm6]	ACA	C	2.727e^-4	0.804	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	17389817	3R_17389817_SNP [dm3] 3R_21564095_SNP [dm6]	A	T	2.734e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20815839	3R_20815839_SNP [dm3] 3R_24990117_SNP [dm6]	T	G	2.738e^-4	0.804	INTRON tnc
3L	13464630	3L_13464630_SNP [dm3] 3L_13471530_SNP [dm6]	G	A	2.738e^-4	0.804	INTRON CG10089
2R	11809964	2R_11809964_SNP [dm3] 2R_15922459_SNP [dm6]	G	C	2.750e^-4	0.804	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24951597	3R_24951597_SNP [dm3] 3R_29125875_SNP [dm6]	G	C	2.759e^-4	0.804	SYNONYMOUS_CODING CG11880	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13579958	2L_13579958_SNP [dm3] 2L_13579958_SNP [dm6]	A	T	2.761e^-4	0.804	INTRON kuz
2L	14471284	2L_14471284_SNP [dm3] 2L_14471284_SNP [dm6]	A	T	2.762e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9793675	3R_9793675_SNP [dm3] 3R_13967953_SNP [dm6]	T	C	2.776e^-4	0.804	UTR_3_PRIME rdx DOWNSTREAM rdx & 1 other	TF binding site BDTNP1_TFBS_z
3R	20706588	3R_20706588_SNP [dm3] 3R_24880866_SNP [dm6]	G	A	2.780e^-4	0.804	SYNONYMOUS_CODING CG11089 DOWNSTREAM CG31121	TF binding site mE1_TFBS_cad
3R	10599189	3R_10599189_SNP [dm3] 3R_14773467_SNP [dm6]	G	A	2.781e^-4	0.804	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7883170	X_7883170_SNP [dm3] X_7989137_SNP [dm6]	G	A	2.787e^-4	0.804	INTERGENIC
X	8292370	X_8292370_SNP [dm3] X_8398337_SNP [dm6]	C	G	2.789e^-4	0.804	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3253001	3L_3253001_SNP [dm3] 3L_3253001_SNP [dm6]	T	A	2.792e^-4	0.804	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5361983	3L_5361983_SNP [dm3] 3L_5368883_SNP [dm6]	A	G	2.797e^-4	0.804	UPSTREAM CG10635 & 1 other INTERGENIC
3L	12062438	3L_12062438_SNP [dm3] 3L_12069338_SNP [dm6]	G	A	2.798e^-4	0.804	SYNONYMOUS_CODING Sema-5c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18608810	2R_18608810_SNP [dm3] 2R_22721305_SNP [dm6]	A	G	2.798e^-4	0.804	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15288443	2L_15288443_SNP [dm3] 2L_15288443_SNP [dm6]	C	A	2.803e^-4	0.804	INTERGENIC
3R	19590175	3R_19590175_SNP [dm3] 3R_23764453_SNP [dm6]	G	T	2.804e^-4	0.804	SYNONYMOUS_CODING Lsd-1 START_GAINED Lsd-1 UTR_5_PRIME Lsd-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6670831	2R_6670831_SNP [dm3] 2R_10783326_SNP [dm6]	C	A	2.809e^-4	0.804	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9014584	2R_9014584_SNP [dm3] 2R_13127079_SNP [dm6]	T	C	2.814e^-4	0.804	DOWNSTREAM CG3955 INTERGENIC
3L	6625632	3L_6625632_SNP [dm3] 3L_6632532_SNP [dm6]	A	C	2.821e^-4	0.804	INTRON GluRIA
3R	12078996	3R_12078996_SNP [dm3] 3R_16253274_SNP [dm6]	C	T	2.828e^-4	0.804	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9748518	3R_9748518_SNP [dm3] 3R_13922796_SNP [dm6]	T	C	2.833e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8483823	3R_8483823_SNP [dm3] 3R_12658101_SNP [dm6]	C	T	2.836e^-4	0.804	INTRON CG6225	TF binding site mE1_TFBS_cad
3R	8483832	3R_8483832_SNP [dm3] 3R_12658110_SNP [dm6]	T	A	2.836e^-4	0.804	INTRON CG6225	TF binding site mE1_TFBS_cad
3R	25016530	3R_25016530_SNP [dm3] 3R_29190808_SNP [dm6]	G	A	2.838e^-4	0.804	INTRON CG14509
2R	8532447	2R_8532447_SNP [dm3] 2R_12644942_SNP [dm6]	A	T	2.854e^-4	0.804	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14752040	X_14752040_SNP [dm3] X_14858007_SNP [dm6]	A	C	2.857e^-4	0.804	INTRON Flo2
3L	12487153	3L_12487153_SNP [dm3] 3L_12494053_SNP [dm6]	T	A	2.860e^-4	0.804	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	17780558	3R_17780558_SNP [dm3] 3R_21954836_SNP [dm6]	A	G	2.862e^-4	0.804	INTRON Eip93F
3L	13466650	3L_13466650_SNP [dm3] 3L_13473550_SNP [dm6]	G	T	2.862e^-4	0.804	INTRON CG10089
3R	6629539	3R_6629539_SNP [dm3] 3R_10803817_SNP [dm6]	G	A	2.863e^-4	0.804	SYNONYMOUS_CODING CG14692
3L	7095391	3L_7095391_SNP [dm3] 3L_7102291_SNP [dm6]	T	A	2.864e^-4	0.804	INTRON form3
3L	1505029	3L_1505029_SNP [dm3] 3L_1505029_SNP [dm6]	G	C	2.866e^-4	0.804	NON_SYNONYMOUS_CODING cue INTRON Psa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4205289	3R_4205289_SNP [dm3] 3R_8379567_SNP [dm6]	T	A	2.875e^-4	0.804	INTRON CG45263
3R	25801748	3R_25801748_SNP [dm3] 3R_29976026_SNP [dm6]	T	A	2.876e^-4	0.804	INTERGENIC
3R	15212735	3R_15212735_SNP [dm3] 3R_19387013_SNP [dm6]	T	G	2.878e^-4	0.804	UPSTREAM CG3734 INTRON Ino80 EXON CR34285
3R	15212738	3R_15212738_SNP [dm3] 3R_19387016_SNP [dm6]	C	T	2.878e^-4	0.804	UPSTREAM CG3734 INTRON Ino80 EXON CR34285
2R	16816841	2R_16816841_SNP [dm3] 2R_20929336_SNP [dm6]	T	C	2.886e^-4	0.804	INTRON Rx
3L	7314873	3L_7314873_SNP [dm3] 3L_7321773_SNP [dm6]	C	T	2.890e^-4	0.804	NON_SYNONYMOUS_CODING RhoGEF4 DOWNSTREAM CG8607
3L	12458562	3L_12458562_SNP [dm3] 3L_12465462_SNP [dm6]	A	T	2.895e^-4	0.804	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	12458585	3L_12458585_SNP [dm3] 3L_12465485_SNP [dm6]	T	A	2.895e^-4	0.804	INTRON eyg	TF binding site mE1_TFBS_chinmo
3L	12458596	3L_12458596_SNP [dm3] 3L_12465496_SNP [dm6]	C	T	2.895e^-4	0.804	INTRON eyg	TF binding site mE1_TFBS_chinmo
3L	12458604	3L_12458604_SNP [dm3] 3L_12465504_SNP [dm6]	G	T	2.895e^-4	0.804	INTRON eyg	TF binding site mE1_TFBS_chinmo
3L	7461466	3L_7461466_SNP [dm3] 3L_7468366_SNP [dm6]	G	A	2.901e^-4	0.804	UTR_3_PRIME CG42660 & 2 others
2L	3880414	2L_3880414_SNP [dm3] 2L_3880414_SNP [dm6]	A	G	2.903e^-4	0.804	UPSTREAM capu INTRON capu
3L	9660429	3L_9660429_SNP [dm3] 3L_9667329_SNP [dm6]	A	T	2.905e^-4	0.804	INTRON fry
3L	8608592	3L_8608592_SNP [dm3] 3L_8615492_SNP [dm6]	C	T	2.908e^-4	0.804	SYNONYMOUS_CODING CG6282 UTR_3_PRIME CG6282
3R	13131967	3R_13131967_SNP [dm3] 3R_17306245_SNP [dm6]	G	A	2.913e^-4	0.804	INTERGENIC
X	5536216	X_5536216_SNP [dm3] X_5642183_SNP [dm6]	C	G	2.913e^-4	0.804	INTRON CG42492
3R	26071018	3R_26071018_SNP [dm3] 3R_30245296_SNP [dm6]	T	C	2.916e^-4	0.804	INTRON CG9733
2R	3562045	2R_3562045_SNP [dm3] 2R_7674540_SNP [dm6]	C	T	2.922e^-4	0.804	UTR_5_PRIME CG12107 UPSTREAM mRpL52 DOWNSTREAM U2A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1976971	2L_1976971_SNP [dm3] 2L_1976971_SNP [dm6]	A	G	2.927e^-4	0.804	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8140562	2R_8140562_DEL [dm3] 2R_12253057_DEL [dm6]	AA	A	2.937e^-4	0.804	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17935173	3R_17935173_SNP [dm3] 3R_22109451_SNP [dm6]	C	T	2.941e^-4	0.804	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6185601	3R_6185601_SNP [dm3] 3R_10359879_SNP [dm6]	G	A	2.944e^-4	0.804	NON_SYNONYMOUS_CODING jumu	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	10599209	3R_10599209_SNP [dm3] 3R_14773487_SNP [dm6]	T	G	2.952e^-4	0.804	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16739188	3L_16739188_SNP [dm3] 3L_16746088_SNP [dm6]	G	A	2.953e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	22232347	X_22232347_DEL [dm3] X_22830511_DEL [dm6]	GCTGCTG	G	2.954e^-4	0.804	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
X	15263090	X_15263090_SNP [dm3] X_15369057_SNP [dm6]	G	T	2.968e^-4	0.804	INTRON acj6
2R	12143197	2R_12143197_SNP [dm3] 2R_16255692_SNP [dm6]	G	A	2.970e^-4	0.804	INTRON CngA
2R	12143268	2R_12143268_SNP [dm3] 2R_16255763_SNP [dm6]	G	A	2.970e^-4	0.804	INTRON CngA
3L	13464113	3L_13464113_SNP [dm3] 3L_13471013_SNP [dm6]	C	T	2.970e^-4	0.804	INTRON CG10089	TF binding site mE1_TFBS_cad
X	6228584	X_6228584_DEL [dm3] X_6334551_DEL [dm6]	GCCAATGCCAATCG...	G	2.980e^-4	0.804	INTERGENIC
2R	5976584	2R_5976584_DEL [dm3] 2R_10089079_DEL [dm6]	CACA	C	2.981e^-4	0.804	INTRON CG2269
X	18133047	X_18133047_SNP [dm3] X_18239014_SNP [dm6]	G	C	2.982e^-4	0.804	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1
3L	9862047	3L_9862047_SNP [dm3] 3L_9868947_SNP [dm6]	T	G	2.983e^-4	0.804	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10641152	3L_10641152_SNP [dm3] 3L_10648052_SNP [dm6]	A	T	2.984e^-4	0.804	INTRON CG32066
2L	9882093	2L_9882093_SNP [dm3] 2L_9882093_SNP [dm6]	G	A	2.988e^-4	0.804	INTRON nAChRalpha6
2L	2718723	2L_2718723_SNP [dm3] 2L_2718723_SNP [dm6]	G	A	2.992e^-4	0.804	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_chinmo
3R	16573533	3R_16573533_SNP [dm3] 3R_20747811_SNP [dm6]	T	C	3.005e^-4	0.804	DOWNSTREAM Prosalpha4T1 INTRON CG42322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17019129	X_17019129_DEL [dm3] X_17125096_DEL [dm6]	CA	T	3.019e^-4	0.804	UPSTREAM CG5004 INTRON CG5004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	8756935	3L_8756935_SNP [dm3] 3L_8763835_SNP [dm6]	C	G	3.024e^-4	0.804	INTRON Fhos
3R	21675655	3R_21675655_SNP [dm3] 3R_25849933_SNP [dm6]	C	T	3.048e^-4	0.804	DOWNSTREAM CG14545 INTERGENIC
3L	7314852	3L_7314852_SNP [dm3] 3L_7321752_SNP [dm6]	C	T	3.048e^-4	0.804	NON_SYNONYMOUS_CODING RhoGEF4 DOWNSTREAM CG8607
3R	18372112	3R_18372112_SNP [dm3] 3R_22546390_SNP [dm6]	A	G	3.050e^-4	0.804	UPSTREAM AdipoR INTRON AdipoR	TF binding site BDTNP1_TFBS_twi
3L	8147986	3L_8147986_SNP [dm3] 3L_8154886_SNP [dm6]	T	C	3.050e^-4	0.804	UTR_3_PRIME CG42445	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8118655	2R_8118655_SNP [dm3] 2R_12231150_SNP [dm6]	T	C	3.060e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	15288425	2L_15288425_MNP [dm3] 2L_15288425_MNP [dm6]	TAC	GTT	3.066e^-4	0.804	INTERGENIC
2L	15288428	2L_15288428_INS [dm3] 2L_15288428_INS [dm6]	T	TAG	3.066e^-4	0.804	INTERGENIC
2L	15288438	2L_15288438_SNP [dm3] 2L_15288438_SNP [dm6]	A	T	3.066e^-4	0.804	INTERGENIC
2L	15288439	2L_15288439_INS [dm3] 2L_15288439_INS [dm6]	C	CTATT	3.066e^-4	0.804	INTERGENIC
2L	15288446	2L_15288446_SNP [dm3] 2L_15288446_SNP [dm6]	A	C	3.066e^-4	0.804	INTERGENIC
2L	1482099	2L_1482099_SNP [dm3] 2L_1482099_SNP [dm6]	T	A	3.067e^-4	0.804	INTERGENIC
X	8292203	X_8292203_SNP [dm3] X_8398170_SNP [dm6]	A	G	3.068e^-4	0.804	UPSTREAM CG10555 INTRON CG15345	TF binding site BDTNP1_TFBS_dl
3L	12839024	3L_12839024_SNP [dm3] 3L_12845924_SNP [dm6]	G	C	3.070e^-4	0.804	INTRON CG10948
2L	15288448	2L_15288448_SNP [dm3] 2L_15288448_SNP [dm6]	C	A	3.070e^-4	0.804	INTERGENIC
2L	15288454	2L_15288454_INS [dm3] 2L_15288454_INS [dm6]	A	TT	3.070e^-4	0.804	INTERGENIC
2L	15288458	2L_15288458_SNP [dm3] 2L_15288458_SNP [dm6]	T	A	3.070e^-4	0.804	INTERGENIC
2L	15288460	2L_15288460_SNP [dm3] 2L_15288460_SNP [dm6]	A	T	3.070e^-4	0.804	INTERGENIC
2L	15288463	2L_15288463_MNP [dm3] 2L_15288463_MNP [dm6]	TTGAGT	GCACTA	3.070e^-4	0.804	INTERGENIC
2L	15288471	2L_15288471_SNP [dm3] 2L_15288471_SNP [dm6]	G	A	3.070e^-4	0.804	INTERGENIC
2L	15288477	2L_15288477_SNP [dm3] 2L_15288477_SNP [dm6]	T	A	3.070e^-4	0.804	INTERGENIC
2L	15288491	2L_15288491_SNP [dm3] 2L_15288491_SNP [dm6]	T	A	3.070e^-4	0.804	INTERGENIC
3L	3252996	3L_3252996_SNP [dm3] 3L_3252996_SNP [dm6]	A	G	3.072e^-4	0.804	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18200082	2R_18200082_SNP [dm3] 2R_22312577_SNP [dm6]	C	T	3.093e^-4	0.804	UPSTREAM CR44758 & 1 other INTERGENIC
3R	11982389	3R_11982389_DEL [dm3] 3R_16156667_DEL [dm6]	GATGAATG	G	3.093e^-4	0.804	INTRON CG6006
3R	11811387	3R_11811387_SNP [dm3] 3R_15985665_SNP [dm6]	T	A	3.094e^-4	0.804	UPSTREAM srp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11883181	3R_11883181_SNP [dm3] 3R_16057459_SNP [dm6]	G	T	3.095e^-4	0.804	INTRON msps
3L	18062519	3L_18062519_SNP [dm3] 3L_18069419_SNP [dm6]	T	G	3.099e^-4	0.804	SYNONYMOUS_CODING CG44006 DOWNSTREAM CG44005
X	17019097	X_17019097_SNP [dm3] X_17125064_SNP [dm6]	A	T	3.105e^-4	0.804	UPSTREAM CG5004 INTRON CG5004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	24952695	3R_24952695_SNP [dm3] 3R_29126973_SNP [dm6]	A	G	3.107e^-4	0.804	SYNONYMOUS_CODING CG11880	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19283330	X_19283330_SNP [dm3] X_19389297_SNP [dm6]	T	G	3.107e^-4	0.804	INTRON kek5
2R	14982764	2R_14982764_SNP [dm3] 2R_19095259_SNP [dm6]	T	C	3.116e^-4	0.804	NON_SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
2R	9608483	2R_9608483_SNP [dm3] 2R_13720978_SNP [dm6]	T	A	3.117e^-4	0.804	INTRON fas
2L	451707	2L_451707_SNP [dm3] 2L_451707_SNP [dm6]	G	T	3.118e^-4	0.804	UPSTREAM crq INTRON crq	TF binding site mE1_TFBS_inv
2L	14478697	2L_14478697_SNP [dm3] 2L_14478697_SNP [dm6]	G	A	3.124e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	5205204	X_5205204_SNP [dm3] X_5311171_SNP [dm6]	T	G	3.127e^-4	0.804	UPSTREAM dhd DOWNSTREAM snf INTRON TrxT
2R	3291815	2R_3291815_SNP [dm3] 2R_7404310_SNP [dm6]	T	G	3.141e^-4	0.804	NON_SYNONYMOUS_CODING CG43267 DOWNSTREAM CG43123 INTRON Eaf
2R	8534715	2R_8534715_SNP [dm3] 2R_12647210_SNP [dm6]	A	G	3.146e^-4	0.804	INTRON CG8785
2L	2111749	2L_2111749_SNP [dm3] 2L_2111749_SNP [dm6]	G	C	3.153e^-4	0.804	INTERGENIC
3L	13466755	3L_13466755_SNP [dm3] 3L_13473655_SNP [dm6]	T	C	3.153e^-4	0.804	INTRON CG10089
3R	11689818	3R_11689818_SNP [dm3] 3R_15864096_SNP [dm6]	T	A	3.161e^-4	0.804	INTRON CG31183
2R	19001323	2R_19001323_SNP [dm3] 2R_23113800_SNP [dm6]	A	C	3.165e^-4	0.804	EXON CR44782	TF binding site BDTNP1_TFBS_dl
3L	14944729	3L_14944729_SNP [dm3] 3L_14951629_SNP [dm6]	A	T	3.166e^-4	0.804	INTERGENIC	transposable element FlyBase
3R	19231000	3R_19231000_SNP [dm3] 3R_23405278_SNP [dm6]	G	T	3.174e^-4	0.804	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
3R	11882859	3R_11882859_DEL [dm3] 3R_16057137_DEL [dm6]	TCTTCTACCGT...	T	3.176e^-4	0.804	INTRON msps
X	12416762	X_12416762_SNP [dm3] X_12522729_SNP [dm6]	G	A	3.182e^-4	0.804	SPLICE_SITE_REGION CG43921 INTRON CG43921
3L	11015022	3L_11015022_SNP [dm3] 3L_11021922_SNP [dm6]	C	T	3.196e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8418425	X_8418425_SNP [dm3] X_8524392_SNP [dm6]	G	T	3.197e^-4	0.804	DOWNSTREAM PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20003914	2R_20003914_SNP [dm3] 2R_24116391_SNP [dm6]	T	A	3.197e^-4	0.804	UPSTREAM CG3257 DOWNSTREAM CG3253 INTERGENIC
3R	16131161	3R_16131161_SNP [dm3] 3R_20305439_SNP [dm6]	G	T	3.199e^-4	0.804	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
3R	21676479	3R_21676479_SNP [dm3] 3R_25850757_SNP [dm6]	G	A	3.200e^-4	0.804	SYNONYMOUS_CODING CG14545 UPSTREAM CG5886	TF binding site BDTNP1_TFBS_dl
2L	15288482	2L_15288482_SNP [dm3] 2L_15288482_SNP [dm6]	C	T	3.207e^-4	0.804	INTERGENIC
3L	12300052	3L_12300052_SNP [dm3] 3L_12306952_SNP [dm6]	C	T	3.208e^-4	0.804	INTERGENIC
3R	6156397	3R_6156397_SNP [dm3] 3R_10330675_SNP [dm6]	C	A	3.209e^-4	0.804	UPSTREAM CG12818 INTRON Bruce	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16131147	3R_16131147_MNP [dm3] 3R_20305425_MNP [dm6]	CGGT	AATG	3.217e^-4	0.804	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
2R	5780578	2R_5780578_SNP [dm3] 2R_9893073_SNP [dm6]	T	A	3.219e^-4	0.804	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
3L	5330849	3L_5330849_SNP [dm3] 3L_5337749_SNP [dm6]	G	A	3.222e^-4	0.804	INTERGENIC
3R	22824504	3R_22824504_SNP [dm3] 3R_26998782_SNP [dm6]	C	A	3.224e^-4	0.804	UPSTREAM CG31077 INTRON RYa-R
2R	10901182	2R_10901182_SNP [dm3] 2R_15013677_SNP [dm6]	T	C	3.225e^-4	0.804	UPSTREAM CG43101 INTRON hbs
3R	8476164	3R_8476164_SNP [dm3] 3R_12650442_SNP [dm6]	T	G	3.225e^-4	0.804	INTRON Dtg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	6598001	3R_6598001_SNP [dm3] 3R_10772279_SNP [dm6]	G	T	3.228e^-4	0.804	NON_SYNONYMOUS_CODING CG45076 DOWNSTREAM fau	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16841993	2R_16841993_SNP [dm3] 2R_20954488_SNP [dm6]	A	G	3.228e^-4	0.804	DOWNSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	20119224	3R_20119224_SNP [dm3] 3R_24293502_SNP [dm6]	G	A	3.234e^-4	0.804	SYNONYMOUS_CODING CG5715 DOWNSTREAM CG6364	TF binding site mE1_TFBS_sens
2R	11803487	2R_11803487_SNP [dm3] 2R_15915982_SNP [dm6]	T	C	3.239e^-4	0.804	UPSTREAM CR44373 INTRON sli
X	18132799	X_18132799_SNP [dm3] X_18238766_SNP [dm6]	G	A	3.241e^-4	0.804	INTERGENIC	silencer mE1_HDAC_PRE
2L	15735038	2L_15735038_SNP [dm3] 2L_15735038_SNP [dm6]	A	T	3.243e^-4	0.804	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	8620246	2R_8620246_SNP [dm3] 2R_12732741_SNP [dm6]	A	G	3.247e^-4	0.804	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11620990	3L_11620990_SNP [dm3] 3L_11627890_SNP [dm6]	G	C	3.252e^-4	0.804	UPSTREAM CG18815 DOWNSTREAM PCID2 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	12214923	2R_12214923_DEL [dm3] 2R_16327418_DEL [dm6]	AA	A	3.254e^-4	0.804	INTRON Vha44
3R	24719216	3R_24719216_SNP [dm3] 3R_28893494_SNP [dm6]	G	C	3.277e^-4	0.804	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
2R	16019985	2R_16019985_SNP [dm3] 2R_20132480_SNP [dm6]	C	G	3.278e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14618578	3R_14618578_DEL [dm3] 3R_18792856_DEL [dm6]	TATTGTGTACCCAACAGACA...	T	3.290e^-4	0.804	UPSTREAM CG7720 INTRON CG7720
3L	20318256	3L_20318256_SNP [dm3] 3L_20325156_SNP [dm6]	C	G	3.291e^-4	0.804	INTERGENIC	transposable element FlyBase
2R	14128903	2R_14128903_SNP [dm3] 2R_18241398_SNP [dm6]	T	C	3.293e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9166990	3R_9166990_SNP [dm3] 3R_13341268_SNP [dm6]	C	T	3.299e^-4	0.804	INTRON PK2-R1
X	13326240	X_13326240_SNP [dm3] X_13432207_SNP [dm6]	C	G	3.300e^-4	0.804	INTERGENIC
3L	12458606	3L_12458606_SNP [dm3] 3L_12465506_SNP [dm6]	A	C	3.301e^-4	0.804	INTRON eyg	TF binding site mE1_TFBS_chinmo
2L	5003172	2L_5003172_SNP [dm3] 2L_5003172_SNP [dm6]	C	T	3.305e^-4	0.804	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	10696539	3R_10696539_SNP [dm3] 3R_14870817_SNP [dm6]	C	T	3.305e^-4	0.804	INTRON btsz
3L	1020705	3L_1020705_SNP [dm3] 3L_1020705_SNP [dm6]	A	C	3.312e^-4	0.804	INTRON trio
2L	3002976	2L_3002976_SNP [dm3] 2L_3002976_SNP [dm6]	C	T	3.314e^-4	0.804	INTRON CG17265
3R	11444283	3R_11444283_SNP [dm3] 3R_15618561_SNP [dm6]	A	T	3.316e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	2746632	X_2746632_DEL [dm3] X_2852599_DEL [dm6]	GAG	G	3.319e^-4	0.804	INTRON kirre
3L	14051996	3L_14051996_SNP [dm3] 3L_14058896_SNP [dm6]	C	A	3.319e^-4	0.804	INTRON CG32138
3L	22226570	3L_22226570_SNP [dm3] 3L_22233470_SNP [dm6]	C	A	3.320e^-4	0.804	INTRON olf413
3L	11021837	3L_11021837_SNP [dm3] 3L_11028737_SNP [dm6]	C	T	3.320e^-4	0.804	INTRON CG32081	TF binding site mE1_TFBS_sens
3R	16131164	3R_16131164_SNP [dm3] 3R_20305442_SNP [dm6]	A	T	3.321e^-4	0.804	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
2L	1538266	2L_1538266_SNP [dm3] 2L_1538266_SNP [dm6]	T	A	3.322e^-4	0.804	INTERGENIC
3R	21503718	3R_21503718_SNP [dm3] 3R_25677996_SNP [dm6]	G	A	3.325e^-4	0.804	NON_SYNONYMOUS_CODING CG4730 UPSTREAM CG5039 DOWNSTREAM Lgr3	TF binding site mE1_TFBS_sens
3L	1432449	3L_1432449_SNP [dm3] 3L_1432449_SNP [dm6]	A	G	3.325e^-4	0.804	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	861286	2L_861286_SNP [dm3] 2L_861286_SNP [dm6]	T	G	3.325e^-4	0.804	SYNONYMOUS_CODING CG13950 DOWNSTREAM aru	TF binding site mE1_TFBS_chinmo
2L	14534712	2L_14534712_SNP [dm3] 2L_14534712_SNP [dm6]	A	G	3.330e^-4	0.804	INTERGENIC
2L	17157048	2L_17157048_SNP [dm3] 2L_17157048_SNP [dm6]	T	G	3.342e^-4	0.804	INTRON beat-IIIa & 1 other
3R	25014183	3R_25014183_SNP [dm3] 3R_29188461_SNP [dm6]	T	G	3.345e^-4	0.804	INTRON CG14509
3L	8214445	3L_8214445_SNP [dm3] 3L_8221345_SNP [dm6]	A	C	3.348e^-4	0.804	UPSTREAM CG13678 INTERGENIC
2L	14471373	2L_14471373_INS [dm3] 2L_14471373_INS [dm6]	C	CATA	3.355e^-4	0.804	INTERGENIC
2R	8532352	2R_8532352_SNP [dm3] 2R_12644847_SNP [dm6]	C	T	3.356e^-4	0.804	INTRON CG8785	TF binding site mE1_TFBS_cad
2L	10744342	2L_10744342_SNP [dm3] 2L_10744342_SNP [dm6]	C	T	3.360e^-4	0.804	UTR_3_PRIME CG17124 UPSTREAM CG6729 DOWNSTREAM CG17124	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11016530	3L_11016530_SNP [dm3] 3L_11023430_SNP [dm6]	T	G	3.368e^-4	0.804	UPSTREAM Fad2 INTERGENIC
X	5196405	X_5196405_SNP [dm3] X_5302372_SNP [dm6]	C	G	3.374e^-4	0.804	DOWNSTREAM CG3323 INTRON CG42749
2R	8174583	2R_8174583_SNP [dm3] 2R_12287078_SNP [dm6]	T	C	3.375e^-4	0.804	INTRON CG42700
3R	22328055	3R_22328055_SNP [dm3] 3R_26502333_SNP [dm6]	C	T	3.384e^-4	0.804	INTRON plum
3L	16313078	3L_16313078_SNP [dm3] 3L_16319978_SNP [dm6]	T	C	3.385e^-4	0.804	UPSTREAM CG13041 & 1 other DOWNSTREAM CR45663 & 1 other INTRON CG13060
3L	1828364	3L_1828364_SNP [dm3] 3L_1828364_SNP [dm6]	A	G	3.387e^-4	0.804	INTRON Cpr62Ba
2L	1111874	2L_1111874_SNP [dm3] 2L_1111874_SNP [dm6]	C	T	3.399e^-4	0.804	SYNONYMOUS_CODING CG14339	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15649307	2L_15649307_SNP [dm3] 2L_15649307_SNP [dm6]	T	A	3.408e^-4	0.804	SYNONYMOUS_CODING CG4587
2L	18179753	2L_18179753_SNP [dm3] 2L_18179753_SNP [dm6]	C	A	3.410e^-4	0.804	INTRON CG42750
3R	8120715	3R_8120715_SNP [dm3] 3R_12294993_SNP [dm6]	C	T	3.410e^-4	0.804	SYNONYMOUS_CODING svp INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9882082	2L_9882082_SNP [dm3] 2L_9882082_SNP [dm6]	T	A	3.438e^-4	0.804	INTRON nAChRalpha6
3R	26572983	3R_26572983_INS [dm3] 3R_30747261_INS [dm6]	A	AGAC	3.438e^-4	0.804	UPSTREAM Npc2h & 1 other INTERGENIC
3R	12325835	3R_12325835_SNP [dm3] 3R_16500113_SNP [dm6]	C	T	3.439e^-4	0.804	INTRON decay
2R	8149837	2R_8149837_SNP [dm3] 2R_12262332_SNP [dm6]	C	T	3.445e^-4	0.804	INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3R	7806320	3R_7806320_SNP [dm3] 3R_11980598_SNP [dm6]	C	T	3.451e^-4	0.804	UPSTREAM CG18547 DOWNSTREAM CG12224 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	10636954	3L_10636954_SNP [dm3] 3L_10643854_SNP [dm6]	G	A	3.457e^-4	0.804	SYNONYMOUS_CODING CG14153 DOWNSTREAM CG14154 INTRON CG32066
3R	24957228	3R_24957228_SNP [dm3] 3R_29131506_SNP [dm6]	G	T	3.470e^-4	0.804	UPSTREAM dgt6 INTRON Vha100-1	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	4213757	3R_4213757_SNP [dm3] 3R_8388035_SNP [dm6]	A	G	3.473e^-4	0.804	SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1699503	2L_1699503_SNP [dm3] 2L_1699503_SNP [dm6]	A	G	3.485e^-4	0.804	UTR_3_PRIME chinmo DOWNSTREAM chinmo
2L	455532	2L_455532_SNP [dm3] 2L_455532_SNP [dm6]	G	C	3.486e^-4	0.804	UTR_5_PRIME CG4133 DOWNSTREAM CG4164 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7261846	2R_7261846_SNP [dm3] 2R_11374341_SNP [dm6]	T	A	3.497e^-4	0.804	SYNONYMOUS_CODING CG13203 UPSTREAM CG13203	TF binding site mE1_TFBS_chinmo
2L	12428484	2L_12428484_SNP [dm3] 2L_12428484_SNP [dm6]	T	G	3.498e^-4	0.804	SYNONYMOUS_CODING CG6388 UPSTREAM CG5446	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18133971	X_18133971_SNP [dm3] X_18239938_SNP [dm6]	C	T	3.506e^-4	0.804	DOWNSTREAM upd2 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	17157049	2L_17157049_SNP [dm3] 2L_17157049_SNP [dm6]	C	A	3.512e^-4	0.804	INTRON beat-IIIa & 1 other
3L	15774763	3L_15774763_SNP [dm3] 3L_15781663_SNP [dm6]	T	C	3.516e^-4	0.804	INTERGENIC
3L	12458567	3L_12458567_SNP [dm3] 3L_12465467_SNP [dm6]	C	G	3.521e^-4	0.804	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	23884719	3R_23884719_SNP [dm3] 3R_28058997_SNP [dm6]	G	A	3.521e^-4	0.804	INTRON CG34362
3R	2716195	3R_2716195_SNP [dm3] 3R_6890473_SNP [dm6]	A	T	3.527e^-4	0.804	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	9862075	3L_9862075_SNP [dm3] 3L_9868975_SNP [dm6]	C	A	3.534e^-4	0.804	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11293044	3L_11293044_SNP [dm3] 3L_11299944_SNP [dm6]	A	T	3.553e^-4	0.804	INTERGENIC
2L	14857813	2L_14857813_SNP [dm3] 2L_14857813_SNP [dm6]	T	A	3.553e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	11856973	2R_11856973_SNP [dm3] 2R_15969468_SNP [dm6]	A	T	3.554e^-4	0.804	NON_SYNONYMOUS_CODING Strn-Mlck
X	4291434	X_4291434_SNP [dm3] X_4397401_SNP [dm6]	A	C	3.583e^-4	0.804	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14151101	3L_14151101_SNP [dm3] 3L_14158001_SNP [dm6]	C	T	3.586e^-4	0.804	INTERGENIC	regulatory region REDfly_CRMs
X	2705466	X_2705466_SNP [dm3] X_2811433_SNP [dm6]	T	A	3.591e^-4	0.804	DOWNSTREAM CG12498 INTRON kirre
2L	16919322	2L_16919322_SNP [dm3] 2L_16919322_SNP [dm6]	G	T	3.593e^-4	0.804	INTERGENIC
3R	24702653	3R_24702653_SNP [dm3] 3R_28876931_SNP [dm6]	G	A	3.594e^-4	0.804	NON_SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15074752	3R_15074752_SNP [dm3] 3R_19249030_SNP [dm6]	C	A	3.607e^-4	0.804	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
3L	8214437	3L_8214437_SNP [dm3] 3L_8221337_SNP [dm6]	T	G	3.617e^-4	0.804	UPSTREAM CG13678 INTERGENIC
3L	10636956	3L_10636956_SNP [dm3] 3L_10643856_SNP [dm6]	A	T	3.618e^-4	0.804	NON_SYNONYMOUS_CODING CG14153 DOWNSTREAM CG14154 INTRON CG32066
X	18133623	X_18133623_SNP [dm3] X_18239590_SNP [dm6]	A	G	3.618e^-4	0.804	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	19067170	2R_19067170_DEL [dm3] 2R_23179647_DEL [dm6]	TCCT	T	3.624e^-4	0.804	INTRON CG34371
2R	5784679	2R_5784679_SNP [dm3] 2R_9897174_SNP [dm6]	A	G	3.639e^-4	0.804	SYNONYMOUS_CODING CG30007
3L	10644043	3L_10644043_SNP [dm3] 3L_10650943_SNP [dm6]	T	A	3.641e^-4	0.804	INTRON CG32066
3R	20716404	3R_20716404_SNP [dm3] 3R_24890682_SNP [dm6]	C	T	3.644e^-4	0.804	INTRON CG31121
3L	19595933	3L_19595933_SNP [dm3] 3L_19602833_SNP [dm6]	G	T	3.645e^-4	0.804	NON_SYNONYMOUS_CODING CG9368 UTR_3_PRIME CG9368
3R	11714145	3R_11714145_SNP [dm3] 3R_15888423_SNP [dm6]	T	G	3.646e^-4	0.804	DOWNSTREAM CG14877 INTERGENIC
X	18133973	X_18133973_SNP [dm3] X_18239940_SNP [dm6]	G	C	3.652e^-4	0.804	DOWNSTREAM upd2 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	11857022	2R_11857022_SNP [dm3] 2R_15969517_SNP [dm6]	G	A	3.652e^-4	0.804	NON_SYNONYMOUS_CODING Strn-Mlck
2L	11919785	2L_11919785_SNP [dm3] 2L_11919785_SNP [dm6]	T	A	3.653e^-4	0.804	INTRON Pde1c
X	8291969	X_8291969_SNP [dm3] X_8397936_SNP [dm6]	C	A	3.658e^-4	0.804	UTR_5_PRIME CG15345
2R	11857008	2R_11857008_SNP [dm3] 2R_15969503_SNP [dm6]	T	G	3.658e^-4	0.804	SYNONYMOUS_CODING Strn-Mlck
3R	26698293	3R_26698293_SNP [dm3] 3R_30872571_SNP [dm6]	T	C	3.661e^-4	0.804	UPSTREAM CG15545 INTERGENIC
2R	8176885	2R_8176885_SNP [dm3] 2R_12289380_SNP [dm6]	G	C	3.671e^-4	0.804	INTRON CG42700
3R	12238491	3R_12238491_SNP [dm3] 3R_16412769_SNP [dm6]	T	C	3.672e^-4	0.804	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
2R	11857007	2R_11857007_SNP [dm3] 2R_15969502_SNP [dm6]	A	G	3.673e^-4	0.804	NON_SYNONYMOUS_CODING Strn-Mlck
2R	12143209	2R_12143209_SNP [dm3] 2R_16255704_SNP [dm6]	G	A	3.673e^-4	0.804	INTRON CngA
2L	10792123	2L_10792123_SNP [dm3] 2L_10792123_SNP [dm6]	C	A	3.673e^-4	0.804	DOWNSTREAM CG31870 INTRON CG31869
3R	24951601	3R_24951601_SNP [dm3] 3R_29125879_SNP [dm6]	C	T	3.674e^-4	0.804	SYNONYMOUS_CODING CG11880	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13544814	2R_13544814_SNP [dm3] 2R_17657309_SNP [dm6]	G	A	3.675e^-4	0.804	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10599194	3R_10599194_SNP [dm3] 3R_14773472_SNP [dm6]	C	A	3.675e^-4	0.804	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19659406	3R_19659406_SNP [dm3] 3R_23833684_SNP [dm6]	C	A	3.681e^-4	0.804	INTRON CG34355
3R	19145887	3R_19145887_SNP [dm3] 3R_23320165_SNP [dm6]	T	C	3.693e^-4	0.804	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9758699	3R_9758699_SNP [dm3] 3R_13932977_SNP [dm6]	C	A	3.694e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	5717510	2L_5717510_SNP [dm3] 2L_5717510_SNP [dm6]	G	A	3.695e^-4	0.804	NON_SYNONYMOUS_CODING CG34011 UPSTREAM CG14007 DOWNSTREAM CG11149
3R	26937041	3R_26937041_SNP [dm3] 3R_31111319_SNP [dm6]	C	T	3.700e^-4	0.804	INTERGENIC
3R	6604624	3R_6604624_SNP [dm3] 3R_10778902_SNP [dm6]	T	A	3.704e^-4	0.804	UPSTREAM Desi INTERGENIC
3R	24721479	3R_24721479_SNP [dm3] 3R_28895757_SNP [dm6]	G	T	3.717e^-4	0.804	INTRON Doa
X	14398340	X_14398340_SNP [dm3] X_14504307_SNP [dm6]	C	T	3.717e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22731980	3R_22731980_SNP [dm3] 3R_26906258_SNP [dm6]	T	G	3.721e^-4	0.804	INTRON T48	regulatory region REDfly_CRMs
3R	7806339	3R_7806339_SNP [dm3] 3R_11980617_SNP [dm6]	T	C	3.721e^-4	0.804	UPSTREAM CG18547 DOWNSTREAM CG12224 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	14506498	3R_14506498_SNP [dm3] 3R_18680776_SNP [dm6]	A	G	3.726e^-4	0.804	UTR_5_PRIME CG7708 DOWNSTREAM CG7706
3R	7983980	3R_7983980_SNP [dm3] 3R_12158258_SNP [dm6]	T	C	3.740e^-4	0.804	INTRON dpr15
3R	10663527	3R_10663527_SNP [dm3] 3R_14837805_SNP [dm6]	C	T	3.742e^-4	0.804	INTRON btsz
X	10377976	X_10377976_SNP [dm3] X_10483943_SNP [dm6]	T	A	3.748e^-4	0.804	INTRON CG32687
2R	8144991	2R_8144991_SNP [dm3] 2R_12257486_SNP [dm6]	A	G	3.751e^-4	0.804	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
3R	9773399	3R_9773399_SNP [dm3] 3R_13947677_SNP [dm6]	A	T	3.753e^-4	0.804	UPSTREAM CG31517 INTERGENIC
X	8618596	X_8618596_SNP [dm3] X_8724563_SNP [dm6]	T	A	3.757e^-4	0.804	UPSTREAM CR43297 INTERGENIC
3L	12184888	3L_12184888_SNP [dm3] 3L_12191788_SNP [dm6]	T	A	3.760e^-4	0.804	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6	TF binding site mE1_TFBS_sens
3L	14551617	3L_14551617_SNP [dm3] 3L_14558517_SNP [dm6]	A	G	3.764e^-4	0.804	INTERGENIC
3R	23011864	3R_23011864_SNP [dm3] 3R_27186142_SNP [dm6]	C	T	3.777e^-4	0.804	INTRON Ser	regulatory region REDfly_CRMs
2R	8141391	2R_8141391_SNP [dm3] 2R_12253886_SNP [dm6]	G	C	3.781e^-4	0.804	UPSTREAM CG13168 INTERGENIC
2L	8987863	2L_8987863_SNP [dm3] 2L_8987863_SNP [dm6]	G	A	3.782e^-4	0.804	INTRON rost
2L	484345	2L_484345_SNP [dm3] 2L_484345_SNP [dm6]	C	T	3.786e^-4	0.804	INTRON ush	TF binding site BDTNP1_TFBS_da
2R	19894059	2R_19894059_SNP [dm3] 2R_24006536_SNP [dm6]	G	A	3.787e^-4	0.804	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9731720	X_9731720_SNP [dm3] X_9837687_SNP [dm6]	T	G	3.789e^-4	0.804	INTRON CG32698
2L	1865933	2L_1865933_SNP [dm3] 2L_1865933_SNP [dm6]	T	C	3.792e^-4	0.804	INTRON CG31663
3R	9252006	3R_9252006_SNP [dm3] 3R_13426284_SNP [dm6]	A	G	3.794e^-4	0.804	UPSTREAM Act87E & 1 other INTRON Act87E	TF binding site BDTNP1_TFBS_twi
2R	6964112	2R_6964112_SNP [dm3] 2R_11076607_SNP [dm6]	G	A	3.802e^-4	0.804	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18170005	X_18170005_SNP [dm3] X_18275972_SNP [dm6]	G	T	3.813e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	9251948	3R_9251948_SNP [dm3] 3R_13426226_SNP [dm6]	G	T	3.813e^-4	0.804	UPSTREAM Act87E & 1 other INTRON Act87E	TF binding site BDTNP1_TFBS_twi
X	6272545	X_6272545_SNP [dm3] X_6378512_SNP [dm6]	T	C	3.814e^-4	0.804	INTERGENIC
3R	13131897	3R_13131897_DEL [dm3] 3R_17306175_DEL [dm6]	GCATAT	G	3.817e^-4	0.804	INTERGENIC
3L	9627249	3L_9627249_SNP [dm3] 3L_9634149_SNP [dm6]	G	A	3.818e^-4	0.804	INTRON fry
3R	23497233	3R_23497233_SNP [dm3] 3R_27671511_SNP [dm6]	C	T	3.819e^-4	0.804	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
2R	8145258	2R_8145258_SNP [dm3] 2R_12257753_SNP [dm6]	A	G	3.821e^-4	0.804	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
2L	10744388	2L_10744388_SNP [dm3] 2L_10744388_SNP [dm6]	A	G	3.825e^-4	0.804	UTR_3_PRIME CG17124 UPSTREAM CG6729 DOWNSTREAM CG17124	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26615235	3R_26615235_SNP [dm3] 3R_30789513_SNP [dm6]	G	A	3.831e^-4	0.804	DOWNSTREAM wts & 1 other INTERGENIC
3R	14138381	3R_14138381_SNP [dm3] 3R_18312659_SNP [dm6]	T	A	3.831e^-4	0.804	UPSTREAM PKD INTRON PKD	TF binding site mE1_TFBS_HSA
3R	24954024	3R_24954024_SNP [dm3] 3R_29128302_SNP [dm6]	T	A	3.835e^-4	0.804	DOWNSTREAM dgt6 & 1 other INTERGENIC
2L	8223281	2L_8223281_SNP [dm3] 2L_8223281_SNP [dm6]	G	C	3.837e^-4	0.804	SYNONYMOUS_CODING Pvr
3R	11708133	3R_11708133_SNP [dm3] 3R_15882411_SNP [dm6]	T	C	3.849e^-4	0.804	INTERGENIC
3L	1288372	3L_1288372_SNP [dm3] 3L_1288372_SNP [dm6]	G	C	3.860e^-4	0.804	DOWNSTREAM CG32333 INTRON CG32333
3R	15869814	3R_15869814_SNP [dm3] 3R_20044092_SNP [dm6]	A	T	3.866e^-4	0.804	INTRON CG17193 & 2 others
3R	24688303	3R_24688303_SNP [dm3] 3R_28862581_SNP [dm6]	A	T	3.866e^-4	0.804	INTRON spg	TF binding site BDTNP1_TFBS_dl
2R	9933853	2R_9933853_SNP [dm3] 2R_14046348_SNP [dm6]	G	A	3.869e^-4	0.804	INTRON mam
3R	11861605	3R_11861605_SNP [dm3] 3R_16035883_SNP [dm6]	T	C	3.873e^-4	0.804	INTRON pnr
3L	3253013	3L_3253013_SNP [dm3] 3L_3253013_SNP [dm6]	A	G	3.883e^-4	0.804	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11016390	3L_11016390_DEL [dm3] 3L_11023290_DEL [dm6]	CA	C	3.891e^-4	0.804	UPSTREAM Fad2 INTERGENIC	regulatory region REDfly_CRMs
2R	18695660	2R_18695660_SNP [dm3] 2R_22808155_SNP [dm6]	G	T	3.892e^-4	0.804	START_GAINED stl UTR_5_PRIME stl UPSTREAM stl	TF binding site mE1_TFBS_cad
2R	16369743	2R_16369743_SNP [dm3] 2R_20482238_SNP [dm6]	T	G	3.895e^-4	0.804	INTERGENIC
2L	15733128	2L_15733128_SNP [dm3] 2L_15733128_SNP [dm6]	G	A	3.905e^-4	0.804	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26699974	3R_26699974_SNP [dm3] 3R_30874252_SNP [dm6]	A	T	3.911e^-4	0.804	DOWNSTREAM CG15546 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6153092	2R_6153092_INS [dm3] 2R_10265587_INS [dm6]	T	TATG	3.912e^-4	0.804	UPSTREAM CG12910 INTRON CG12910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3613643	2R_3613643_INS [dm3] 2R_7726138_INS [dm6]	A	AATCACAACACTTA...	3.913e^-4	0.804	INTRON CG18812	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17029158	3R_17029158_SNP [dm3] 3R_21203436_SNP [dm6]	A	T	3.916e^-4	0.804	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8141432	2R_8141432_SNP [dm3] 2R_12253927_SNP [dm6]	C	A	3.918e^-4	0.804	UPSTREAM CG13168 INTERGENIC
3R	5480312	3R_5480312_SNP [dm3] 3R_9654590_SNP [dm6]	G	A	3.920e^-4	0.804	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo
3R	16131138	3R_16131138_SNP [dm3] 3R_20305416_SNP [dm6]	A	C	3.922e^-4	0.804	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
2L	11919178	2L_11919178_SNP [dm3] 2L_11919178_SNP [dm6]	A	T	3.923e^-4	0.804	INTRON Pde1c
3L	12182794	3L_12182794_SNP [dm3] 3L_12189694_SNP [dm6]	C	T	3.925e^-4	0.804	NON_SYNONYMOUS_CODING Est-6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24721421	3R_24721421_SNP [dm3] 3R_28895699_SNP [dm6]	G	A	3.926e^-4	0.804	INTRON Doa
2L	10728460	2L_10728460_SNP [dm3] 2L_10728460_SNP [dm6]	G	A	3.929e^-4	0.804	NON_SYNONYMOUS_CODING CG6431 UPSTREAM CG6443	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8292079	X_8292079_SNP [dm3] X_8398046_SNP [dm6]	G	C	3.931e^-4	0.804	START_GAINED CG15345 UTR_5_PRIME CG15345 UPSTREAM CG10555	TF binding site BDTNP1_TFBS_dl
2L	7111759	2L_7111759_SNP [dm3] 2L_7111759_SNP [dm6]	A	T	3.935e^-4	0.804	INTRON Pvf3
2R	19591610	2R_19591610_SNP [dm3] 2R_23704087_SNP [dm6]	G	T	3.938e^-4	0.804	SYNONYMOUS_CODING l_2_dtl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12316820	2L_12316820_SNP [dm3] 2L_12316820_SNP [dm6]	G	A	3.944e^-4	0.804	UPSTREAM CR45282 EXON CR45283
2L	13726506	2L_13726506_SNP [dm3] 2L_13726506_SNP [dm6]	G	T	3.944e^-4	0.804	INTERGENIC
3R	26572949	3R_26572949_SNP [dm3] 3R_30747227_SNP [dm6]	T	G	3.954e^-4	0.804	UPSTREAM Npc2h & 1 other INTERGENIC
3L	1020924	3L_1020924_SNP [dm3] 3L_1020924_SNP [dm6]	G	A	3.966e^-4	0.804	INTRON trio
3L	11656568	3L_11656568_SNP [dm3] 3L_11663468_SNP [dm6]	C	T	3.974e^-4	0.804	INTRON CG32085
3R	18127414	3R_18127414_SNP [dm3] 3R_22301692_SNP [dm6]	T	C	3.978e^-4	0.804	INTRON CG7084
3R	24946468	3R_24946468_SNP [dm3] 3R_29120746_SNP [dm6]	G	A	3.980e^-4	0.804	INTRON yem	TF binding site mE1_TFBS_chinmo
2R	8975684	2R_8975684_SNP [dm3] 2R_13088179_SNP [dm6]	C	T	3.985e^-4	0.804	INTERGENIC
3R	23122439	3R_23122439_SNP [dm3] 3R_27296717_SNP [dm6]	T	G	3.989e^-4	0.804	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26309317	3R_26309317_SNP [dm3] 3R_30483595_SNP [dm6]	T	C	3.991e^-4	0.804	INTRON PH4alphaEFB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6571755	3R_6571755_SNP [dm3] 3R_10746033_SNP [dm6]	C	T	3.992e^-4	0.804	INTRON TkR86C
2L	12035535	2L_12035535_SNP [dm3] 2L_12035535_SNP [dm6]	C	T	3.993e^-4	0.804	SYNONYMOUS_CODING CG18788 DOWNSTREAM Tom70
3R	9834110	3R_9834110_SNP [dm3] 3R_14008388_SNP [dm6]	C	A	3.993e^-4	0.804	INTRON rdx
2R	1243712	2R_1243712_SNP [dm3] 2R_5356207_SNP [dm6]	C	A	3.998e^-4	0.804	INTERGENIC
3R	6570954	3R_6570954_SNP [dm3] 3R_10745232_SNP [dm6]	T	G	3.999e^-4	0.804	INTRON TkR86C
3L	15780974	3L_15780974_SNP [dm3] 3L_15787874_SNP [dm6]	C	T	4.012e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr
3R	6187998	3R_6187998_SNP [dm3] 3R_10362276_SNP [dm6]	T	C	4.014e^-4	0.804	UTR_3_PRIME Rfx DOWNSTREAM jumu
X	17018847	X_17018847_SNP [dm3] X_17124814_SNP [dm6]	C	T	4.030e^-4	0.804	UPSTREAM CG5004 INTRON CG5004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	1560354	3L_1560354_SNP [dm3] 3L_1560354_SNP [dm6]	A	G	4.030e^-4	0.804	SYNONYMOUS_CODING CG7879 DOWNSTREAM Pex10	TF binding site mE1_TFBS_inv
3R	17746601	3R_17746601_SNP [dm3] 3R_21920879_SNP [dm6]	G	C	4.037e^-4	0.804	INTERGENIC
2L	2186921	2L_2186921_SNP [dm3] 2L_2186921_SNP [dm6]	T	C	4.040e^-4	0.804	UPSTREAM tRNA:CR31946 DOWNSTREAM CR44066 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	7751014	3R_7751014_SNP [dm3] 3R_11925292_SNP [dm6]	T	A	4.041e^-4	0.804	INTRON Cad87A
X	12592664	X_12592664_DEL [dm3] X_12698631_DEL [dm6]	CCCATTG	T	4.045e^-4	0.804	INTRON Smr	TF binding site BDTNP1_TFBS_dl
3L	6818085	3L_6818085_SNP [dm3] 3L_6824985_SNP [dm6]	A	G	4.046e^-4	0.804	INTERGENIC
2L	14983679	2L_14983679_SNP [dm3] 2L_14983679_SNP [dm6]	C	T	4.050e^-4	0.804	INTRON mol
3R	10758287	3R_10758287_INS [dm3] 3R_14932565_INS [dm6]	T	TGCTA	4.058e^-4	0.804	INTERGENIC
3R	4982534	3R_4982534_DEL [dm3] 3R_9156812_DEL [dm6]	TCCGTATTTAT...	T	4.063e^-4	0.804	INTRON pum
3R	8427306	3R_8427306_SNP [dm3] 3R_12601584_SNP [dm6]	G	T	4.067e^-4	0.804	INTERGENIC
3L	12288793	3L_12288793_SNP [dm3] 3L_12295693_SNP [dm6]	C	A	4.070e^-4	0.804	INTRON CG4328
3L	12132799	3L_12132799_DEL [dm3] 3L_12139699_DEL [dm6]	ACTGTATGTAT...	C	4.074e^-4	0.804	INTRON RhoGAP68F
3L	10644231	3L_10644231_SNP [dm3] 3L_10651131_SNP [dm6]	A	T	4.075e^-4	0.804	INTRON CG32066
3R	14619219	3R_14619219_SNP [dm3] 3R_18793497_SNP [dm6]	A	C	4.078e^-4	0.804	UTR_5_PRIME CG7720 INTRON CG7720
X	8291977	X_8291977_DEL [dm3] X_8397944_DEL [dm6]	AATTATC	A	4.081e^-4	0.804	UTR_5_PRIME CG15345 UPSTREAM CG10555
2L	17351238	2L_17351238_SNP [dm3] 2L_17351238_SNP [dm6]	A	G	4.082e^-4	0.804	INTERGENIC
3L	15774762	3L_15774762_SNP [dm3] 3L_15781662_SNP [dm6]	G	T	4.084e^-4	0.804	INTERGENIC
3L	20334019	3L_20334019_SNP [dm3] 3L_20340919_SNP [dm6]	T	A	4.086e^-4	0.804	INTERGENIC	transposable element FlyBase
3R	12078676	3R_12078676_SNP [dm3] 3R_16252954_SNP [dm6]	T	C	4.090e^-4	0.804	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11856990	2R_11856990_SNP [dm3] 2R_15969485_SNP [dm6]	A	T	4.095e^-4	0.804	SYNONYMOUS_CODING Strn-Mlck
2R	19892520	2R_19892520_SNP [dm3] 2R_24004997_SNP [dm6]	A	G	4.101e^-4	0.804	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9762612	3R_9762612_SNP [dm3] 3R_13936890_SNP [dm6]	G	T	4.108e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14129055	2R_14129055_INS [dm3] 2R_18241550_INS [dm6]	C	CTCTCCC	4.109e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	14915073	2L_14915073_SNP [dm3] 2L_14915073_SNP [dm6]	A	T	4.109e^-4	0.804	INTRON CG42313
3L	17424413	3L_17424413_SNP [dm3] 3L_17431313_SNP [dm6]	G	A	4.112e^-4	0.804	UTR_5_PRIME CG32174 UTR_3_PRIME frc DOWNSTREAM frc INTRON CG32174	TF binding site BDTNP1_TFBS_Med
2R	17146718	2R_17146718_INS [dm3] 2R_21259213_INS [dm6]	A	ATA	4.113e^-4	0.804	INTRON Rgk3
3R	14804597	3R_14804597_SNP [dm3] 3R_18978875_SNP [dm6]	C	G	4.113e^-4	0.804	UPSTREAM CG12269 DOWNSTREAM Smu1 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
2L	8882636	2L_8882636_SNP [dm3] 2L_8882636_SNP [dm6]	A	T	4.115e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	2765826	2L_2765826_SNP [dm3] 2L_2765826_SNP [dm6]	A	T	4.131e^-4	0.804	UPSTREAM aph-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	22203349	3L_22203349_SNP [dm3] 3L_22210249_SNP [dm6]	T	C	4.138e^-4	0.804	INTRON olf413	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13131988	3R_13131988_SNP [dm3] 3R_17306266_SNP [dm6]	G	T	4.139e^-4	0.804	INTERGENIC
2L	15740696	2L_15740696_SNP [dm3] 2L_15740696_SNP [dm6]	A	C	4.142e^-4	0.804	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	396497	2L_396497_SNP [dm3] 2L_396497_SNP [dm6]	C	G	4.143e^-4	0.804	DOWNSTREAM CG4213 EXON CR43718	TF binding site mE1_TFBS_cad
X	12145091	X_12145091_SNP [dm3] X_12251058_SNP [dm6]	T	G	4.143e^-4	0.804	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7314922	3L_7314922_SNP [dm3] 3L_7321822_SNP [dm6]	G	A	4.144e^-4	0.804	SYNONYMOUS_CODING RhoGEF4 DOWNSTREAM CG8607
3R	22676840	3R_22676840_SNP [dm3] 3R_26851118_SNP [dm6]	G	C	4.149e^-4	0.804	INTRON Lerp	TF binding site mE1_TFBS_inv
3R	4014324	3R_4014324_INS [dm3] 3R_8188602_INS [dm6]	A	ACATTTAAACTGAACAACAT...	4.151e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	2767568	3R_2767568_SNP [dm3] 3R_6941846_SNP [dm6]	C	T	4.156e^-4	0.804	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13131958	3R_13131958_SNP [dm3] 3R_17306236_SNP [dm6]	T	G	4.157e^-4	0.804	INTERGENIC
3R	13131961	3R_13131961_SNP [dm3] 3R_17306239_SNP [dm6]	A	T	4.157e^-4	0.804	INTERGENIC
3R	13131963	3R_13131963_INS [dm3] 3R_17306241_INS [dm6]	A	AATT	4.157e^-4	0.804	INTERGENIC
2L	8963918	2L_8963918_SNP [dm3] 2L_8963918_SNP [dm6]	G	T	4.169e^-4	0.804	SYNONYMOUS_CODING CG32985	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6648556	2R_6648556_SNP [dm3] 2R_10761051_SNP [dm6]	T	C	4.174e^-4	0.804	INTRON CG33144 EXON CR43605
2R	8150110	2R_8150110_SNP [dm3] 2R_12262605_SNP [dm6]	C	T	4.176e^-4	0.804	INTRON Cam	TF binding site BDTNP1_TFBS_dl
2R	15266320	2R_15266320_SNP [dm3] 2R_19378815_SNP [dm6]	A	C	4.186e^-4	0.804	SYNONYMOUS_CODING CG10062	TF binding site mE1_TFBS_cad
X	7658063	X_7658063_SNP [dm3] X_7764030_SNP [dm6]	G	A	4.188e^-4	0.804	UPSTREAM Ir7a INTERGENIC
2R	15692831	2R_15692831_INS [dm3] 2R_19805326_INS [dm6]	A	AA	4.190e^-4	0.804	INTERGENIC
2R	14982796	2R_14982796_SNP [dm3] 2R_19095291_SNP [dm6]	G	C	4.193e^-4	0.804	NON_SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
2R	6992882	2R_6992882_SNP [dm3] 2R_11105377_SNP [dm6]	T	A	4.194e^-4	0.804	INTRON luna	TF binding site BDTNP1_TFBS_dl
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	4.194e^-4	0.804	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	4.194e^-4	0.804	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
X	2443401	X_2443401_DEL [dm3] X_2549368_DEL [dm6]	TCCAATTA	T	4.196e^-4	0.804	INTERGENIC
3R	10599218	3R_10599218_SNP [dm3] 3R_14773496_SNP [dm6]	T	C	4.197e^-4	0.804	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13728603	2L_13728603_SNP [dm3] 2L_13728603_SNP [dm6]	C	T	4.200e^-4	0.804	INTERGENIC
X	8990704	X_8990704_SNP [dm3] X_9096671_SNP [dm6]	T	A	4.200e^-4	0.804	INTRON CG7766
2R	16138528	2R_16138528_SNP [dm3] 2R_20251023_SNP [dm6]	A	G	4.204e^-4	0.804	INTRON CG9864
2R	18197000	2R_18197000_DEL [dm3] 2R_22309495_DEL [dm6]	CC	C	4.206e^-4	0.804	INTRON wdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13721954	X_13721954_SNP [dm3] X_13827921_SNP [dm6]	G	C	4.210e^-4	0.804	INTRON jub
3R	26572940	3R_26572940_SNP [dm3] 3R_30747218_SNP [dm6]	C	T	4.215e^-4	0.804	UPSTREAM Npc2h & 1 other INTERGENIC
3R	26572958	3R_26572958_SNP [dm3] 3R_30747236_SNP [dm6]	G	T	4.215e^-4	0.804	UPSTREAM Npc2h & 1 other INTERGENIC
2L	2593723	2L_2593723_SNP [dm3] 2L_2593723_SNP [dm6]	G	T	4.216e^-4	0.804	DOWNSTREAM CG15394 INTERGENIC
3L	8641212	3L_8641212_SNP [dm3] 3L_8648112_SNP [dm6]	A	G	4.217e^-4	0.804	SYNONYMOUS_CODING Arr2 INTRON Pex7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8140944	2R_8140944_SNP [dm3] 2R_12253439_SNP [dm6]	C	T	4.220e^-4	0.804	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18133593	X_18133593_SNP [dm3] X_18239560_SNP [dm6]	T	A	4.224e^-4	0.804	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	26572552	3R_26572552_SNP [dm3] 3R_30746830_SNP [dm6]	A	T	4.231e^-4	0.804	UPSTREAM Npc2h EXON CR43238
2L	11974125	2L_11974125_SNP [dm3] 2L_11974125_SNP [dm6]	A	G	4.236e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17245208	3L_17245208_SNP [dm3] 3L_17252108_SNP [dm6]	C	T	4.238e^-4	0.804	DOWNSTREAM CG6497 INTRON CR43870
3L	12240067	3L_12240067_SNP [dm3] 3L_12246967_SNP [dm6]	A	G	4.250e^-4	0.804	UPSTREAM CR43991 INTRON app
2L	8372098	2L_8372098_SNP [dm3] 2L_8372098_SNP [dm6]	G	A	4.251e^-4	0.804	UPSTREAM CG17292 INTRON CG17292
2L	10508585	2L_10508585_SNP [dm3] 2L_10508585_SNP [dm6]	C	T	4.259e^-4	0.804	SYNONYMOUS_CODING CG7384 DOWNSTREAM CG6094	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23493560	3R_23493560_SNP [dm3] 3R_27667838_SNP [dm6]	C	A	4.263e^-4	0.804	INTRON unc80
3R	14497672	3R_14497672_SNP [dm3] 3R_18671950_SNP [dm6]	A	T	4.269e^-4	0.804	UTR_3_PRIME CG31230 INTRON CG7702	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	13721975	X_13721975_SNP [dm3] X_13827942_SNP [dm6]	T	A	4.278e^-4	0.804	INTRON jub
3L	16887045	3L_16887045_SNP [dm3] 3L_16893945_SNP [dm6]	A	C	4.278e^-4	0.804	INTRON Lmpt
3R	3830424	3R_3830424_SNP [dm3] 3R_8004702_SNP [dm6]	A	G	4.287e^-4	0.804	INTRON CG2698
2R	7193435	2R_7193435_SNP [dm3] 2R_11305930_SNP [dm6]	T	A	4.289e^-4	0.804	SYNONYMOUS_CODING Fpps DOWNSTREAM CG7741	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	5551431	2L_5551431_SNP [dm3] 2L_5551431_SNP [dm6]	A	T	4.290e^-4	0.804	UPSTREAM CG14014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19380428	X_19380428_SNP [dm3] X_19486395_SNP [dm6]	C	T	4.293e^-4	0.804	UPSTREAM CR43260 INTRON pcm	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	9648685	3L_9648685_SNP [dm3] 3L_9655585_SNP [dm6]	C	A	4.299e^-4	0.804	INTRON fry & 1 other

By genomic position
Variant impact
Gene name

Cuticul_7_C25_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results