DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.404e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.0590446
In_3R_K	0.0001175

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.5425	0.0626
In_3R_K	16.4592	0.0003

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1799 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	11020960	3L_11020960_SNP [dm3] 3L_11027860_SNP [dm6]	G	A	2.356e^-8	0.026	NON_SYNONYMOUS_CODING CG32081 DOWNSTREAM CG32079
3L	11016619	3L_11016619_SNP [dm3] 3L_11023519_SNP [dm6]	T	A	2.761e^-8	0.026	UPSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9298492	3L_9298492_SNP [dm3] 3L_9305392_SNP [dm6]	G	A	7.527e^-7	0.428	INTERGENIC
X	8530718	X_8530718_SNP [dm3] X_8636685_SNP [dm6]	C	A	9.123e^-7	0.428	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11017597	3L_11017597_SNP [dm3] 3L_11024497_SNP [dm6]	T	C	1.937e^-6	0.727	NON_SYNONYMOUS_CODING Fad2
2R	6577800	2R_6577800_SNP [dm3] 2R_10690295_SNP [dm6]	T	G	2.346e^-6	0.733	INTRON stan
2R	5784679	2R_5784679_SNP [dm3] 2R_9897174_SNP [dm6]	A	G	3.777e^-6	0.95	SYNONYMOUS_CODING CG30007
3L	5379636	3L_5379636_SNP [dm3] 3L_5386536_SNP [dm6]	A	T	4.111e^-6	0.95	INTERGENIC
2R	5784731	2R_5784731_SNP [dm3] 2R_9897226_SNP [dm6]	C	A	5.916e^-6	0.95	NON_SYNONYMOUS_CODING CG30007
2R	5790483	2R_5790483_SNP [dm3] 2R_9902978_SNP [dm6]	G	A	6.318e^-6	0.95	INTRON CG1441
3L	11023846	3L_11023846_SNP [dm3] 3L_11030746_SNP [dm6]	C	T	6.664e^-6	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19600084	2R_19600084_SNP [dm3] 2R_23712561_SNP [dm6]	T	C	7.405e^-6	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11017014	3L_11017014_SNP [dm3] 3L_11023914_SNP [dm6]	C	A	7.494e^-6	0.95	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18974948	3R_18974948_SNP [dm3] 3R_23149226_SNP [dm6]	T	A	7.754e^-6	0.95	DOWNSTREAM unk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5781414	2R_5781414_SNP [dm3] 2R_9893909_SNP [dm6]	T	A	9.982e^-6	0.95	INTRON CG30007
3L	5379674	3L_5379674_SNP [dm3] 3L_5386574_SNP [dm6]	T	C	1.051e^-5	0.95	INTERGENIC
2L	2557672	2L_2557672_SNP [dm3] 2L_2557672_SNP [dm6]	T	A	1.114e^-5	0.95	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15202112	3R_15202112_SNP [dm3] 3R_19376390_SNP [dm6]	C	T	1.193e^-5	0.95	NON_SYNONYMOUS_CODING CG31245 UPSTREAM CG31404 INTRON Ino80
2L	6775099	2L_6775099_SNP [dm3] 2L_6775099_SNP [dm6]	T	A	1.201e^-5	0.95	UPSTREAM CG17378 INTRON CG17378
2R	14706061	2R_14706061_SNP [dm3] 2R_18818556_SNP [dm6]	T	C	1.235e^-5	0.95	UPSTREAM Phb2 INTERGENIC
2R	6260825	2R_6260825_SNP [dm3] 2R_10373320_SNP [dm6]	T	G	1.269e^-5	0.95	INTRON CG42732
3L	5379687	3L_5379687_SNP [dm3] 3L_5386587_SNP [dm6]	T	C	1.321e^-5	0.95	INTERGENIC
2R	6260988	2R_6260988_SNP [dm3] 2R_10373483_SNP [dm6]	C	T	1.389e^-5	0.95	INTRON CG42732
3L	11004879	3L_11004879_SNP [dm3] 3L_11011779_SNP [dm6]	A	G	1.411e^-5	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	11015542	3L_11015542_SNP [dm3] 3L_11022442_SNP [dm6]	A	C	1.527e^-5	0.95	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5777267	2R_5777267_SNP [dm3] 2R_9889762_SNP [dm6]	G	A	1.536e^-5	0.95	UPSTREAM CG30008 DOWNSTREAM CG12923 INTRON CG1513
3R	26952866	3R_26952866_SNP [dm3] 3R_31127144_SNP [dm6]	C	T	1.721e^-5	0.95	UTR_3_PRIME CG15554 DOWNSTREAM CG15556
2L	3048115	2L_3048115_SNP [dm3] 2L_3048115_SNP [dm6]	T	G	1.743e^-5	0.95	NON_SYNONYMOUS_CODING v_2_k05816 UPSTREAM snRNA:U5:23D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22453404	3R_22453404_SNP [dm3] 3R_26627682_SNP [dm6]	G	A	1.821e^-5	0.95	UPSTREAM TwdlO DOWNSTREAM TwdlK INTERGENIC
3R	22742898	3R_22742898_SNP [dm3] 3R_26917176_SNP [dm6]	A	T	1.841e^-5	0.95	INTRON sda
3R	21210623	3R_21210623_SNP [dm3] 3R_25384901_SNP [dm6]	A	T	1.865e^-5	0.95	DOWNSTREAM CG31437 INTRON Fur1
2R	6260946	2R_6260946_SNP [dm3] 2R_10373441_SNP [dm6]	T	C	1.886e^-5	0.95	INTRON CG42732
3R	11008881	3R_11008881_SNP [dm3] 3R_15183159_SNP [dm6]	T	A	1.984e^-5	0.95	INTRON Gyc88E
X	8046735	X_8046735_SNP [dm3] X_8152702_SNP [dm6]	T	A	2.017e^-5	0.95	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20168183	2R_20168183_SNP [dm3] 2R_24280660_SNP [dm6]	G	A	2.020e^-5	0.95	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16763732	3L_16763732_SNP [dm3] 3L_16770632_SNP [dm6]	G	C	2.024e^-5	0.95	INTRON Nrt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5443743	X_5443743_SNP [dm3] X_5549710_SNP [dm6]	A	G	2.083e^-5	0.95	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16774361	3L_16774361_SNP [dm3] 3L_16781261_SNP [dm6]	C	A	2.099e^-5	0.95	INTRON CG9705	TF binding site BDTNP1_TFBS_dl
2L	12860909	2L_12860909_DEL [dm3] 2L_12860909_DEL [dm6]	AA	C	2.130e^-5	0.95	INTERGENIC
X	8046819	X_8046819_SNP [dm3] X_8152786_SNP [dm6]	C	A	2.144e^-5	0.95	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7724615	2L_7724615_SNP [dm3] 2L_7724615_SNP [dm6]	C	G	2.187e^-5	0.95	NON_SYNONYMOUS_CODING CG13795
3L	11004941	3L_11004941_SNP [dm3] 3L_11011841_SNP [dm6]	T	G	2.330e^-5	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	10426262	2L_10426262_SNP [dm3] 2L_10426262_SNP [dm6]	A	C	2.361e^-5	0.95	UPSTREAM KdelR DOWNSTREAM CG5168 INTRON SmB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5781437	2R_5781437_SNP [dm3] 2R_9893932_SNP [dm6]	A	C	2.376e^-5	0.95	INTRON CG30007
2R	5714209	2R_5714209_SNP [dm3] 2R_9826704_SNP [dm6]	G	T	2.395e^-5	0.95	SYNONYMOUS_CODING dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5778612	2R_5778612_SNP [dm3] 2R_9891107_SNP [dm6]	G	A	2.409e^-5	0.95	UTR_3_PRIME CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
3R	17401687	3R_17401687_SNP [dm3] 3R_21575965_SNP [dm6]	C	T	2.443e^-5	0.95	INTRON InR	TF binding site mE1_TFBS_cad
3L	5379661	3L_5379661_SNP [dm3] 3L_5386561_SNP [dm6]	T	C	2.504e^-5	0.95	INTERGENIC
2R	5780578	2R_5780578_SNP [dm3] 2R_9893073_SNP [dm6]	T	A	2.651e^-5	0.95	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
3R	16045399	3R_16045399_SNP [dm3] 3R_20219677_SNP [dm6]	G	T	2.732e^-5	0.95	INTRON Nlg4
3L	3473916	3L_3473916_SNP [dm3] 3L_3473916_SNP [dm6]	T	C	2.846e^-5	0.95	INTRON CG42324
2L	3048105	2L_3048105_SNP [dm3] 2L_3048105_SNP [dm6]	A	C	2.893e^-5	0.95	NON_SYNONYMOUS_CODING v_2_k05816 UPSTREAM snRNA:U5:23D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2370325	2L_2370325_SNP [dm3] 2L_2370325_SNP [dm6]	A	G	2.904e^-5	0.95	SYNONYMOUS_CODING CG3597 DOWNSTREAM Axud1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8046727	X_8046727_SNP [dm3] X_8152694_SNP [dm6]	T	A	2.931e^-5	0.95	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3048130	2L_3048130_SNP [dm3] 2L_3048130_SNP [dm6]	T	C	2.967e^-5	0.95	SYNONYMOUS_CODING v_2_k05816 UPSTREAM snRNA:U5:23D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4028797	2L_4028797_SNP [dm3] 2L_4028797_SNP [dm6]	T	A	3.007e^-5	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	12939114	3R_12939114_SNP [dm3] 3R_17113392_SNP [dm6]	G	A	3.029e^-5	0.95	INTRON cher	TF binding site mE1_TFBS_cnc
2R	5781559	2R_5781559_SNP [dm3] 2R_9894054_SNP [dm6]	C	T	3.036e^-5	0.95	NON_SYNONYMOUS_CODING CG30007
X	8046934	X_8046934_SNP [dm3] X_8152901_SNP [dm6]	A	G	3.106e^-5	0.95	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5379672	3L_5379672_SNP [dm3] 3L_5386572_SNP [dm6]	A	C	3.135e^-5	0.95	INTERGENIC
3R	21859853	3R_21859853_SNP [dm3] 3R_26034131_SNP [dm6]	T	C	3.144e^-5	0.95	DOWNSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
3L	7575245	3L_7575245_SNP [dm3] 3L_7582145_SNP [dm6]	G	A	3.233e^-5	0.95	INTERGENIC
3L	14012858	3L_14012858_SNP [dm3] 3L_14019758_SNP [dm6]	T	A	3.271e^-5	0.95	UTR_3_PRIME upSET DOWNSTREAM ptip	TF binding site mE1_TFBS_kn
X	8046770	X_8046770_SNP [dm3] X_8152737_SNP [dm6]	A	G	3.301e^-5	0.95	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8046878	X_8046878_SNP [dm3] X_8152845_SNP [dm6]	C	T	3.327e^-5	0.95	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7724783	2L_7724783_SNP [dm3] 2L_7724783_SNP [dm6]	C	A	3.586e^-5	0.95	NON_SYNONYMOUS_CODING CG13795
3R	27381384	3R_27381384_DEL [dm3] 3R_31555662_DEL [dm6]	AAA	A	3.685e^-5	0.95	INTRON nyo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10316665	3L_10316665_DEL [dm3] 3L_10323565_DEL [dm6]	CTT	C	3.685e^-5	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	9208956	X_9208956_SNP [dm3] X_9314923_SNP [dm6]	T	C	3.765e^-5	0.95	EXON CR44534
3L	13019112	3L_13019112_SNP [dm3] 3L_13026012_SNP [dm6]	C	T	3.861e^-5	0.95	SYNONYMOUS_CODING Zmynd10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5789325	2R_5789325_SNP [dm3] 2R_9901820_SNP [dm6]	A	C	3.954e^-5	0.95	INTRON CG1441	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16544566	2L_16544566_SNP [dm3] 2L_16544566_SNP [dm6]	A	C	3.954e^-5	0.95	UPSTREAM CG42389 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	1885932	3L_1885932_SNP [dm3] 3L_1885932_SNP [dm6]	A	C	3.968e^-5	0.95	UPSTREAM Aprt INTRON Tmhs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	10071375	2L_10071375_SNP [dm3] 2L_10071375_SNP [dm6]	C	T	4.152e^-5	0.95	INTRON CG44153
2L	2055744	2L_2055744_SNP [dm3] 2L_2055744_SNP [dm6]	C	A	4.241e^-5	0.95	SYNONYMOUS_CODING Or22c
3L	5379662	3L_5379662_SNP [dm3] 3L_5386562_SNP [dm6]	A	T	4.282e^-5	0.95	INTERGENIC
3L	16759045	3L_16759045_SNP [dm3] 3L_16765945_SNP [dm6]	C	T	4.309e^-5	0.95	UPSTREAM Nrt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8046767	X_8046767_SNP [dm3] X_8152734_SNP [dm6]	G	A	4.318e^-5	0.95	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23980448	3R_23980448_SNP [dm3] 3R_28154726_SNP [dm6]	A	C	4.342e^-5	0.95	INTRON CG34354	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22453174	3R_22453174_SNP [dm3] 3R_26627452_SNP [dm6]	A	C	4.366e^-5	0.95	UPSTREAM TwdlO DOWNSTREAM TwdlK INTERGENIC
2R	14090009	2R_14090009_SNP [dm3] 2R_18202504_SNP [dm6]	G	A	4.429e^-5	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10216987	2L_10216987_SNP [dm3] 2L_10216987_SNP [dm6]	C	T	4.433e^-5	0.95	SYNONYMOUS_CODING Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10709717	3L_10709717_SNP [dm3] 3L_10716617_SNP [dm6]	C	T	4.521e^-5	0.95	INTERGENIC
2L	10426266	2L_10426266_SNP [dm3] 2L_10426266_SNP [dm6]	C	T	4.552e^-5	0.95	UPSTREAM KdelR DOWNSTREAM CG5168 INTRON SmB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2372411	2L_2372411_SNP [dm3] 2L_2372411_SNP [dm6]	G	A	4.561e^-5	0.95	UPSTREAM CG3597 DOWNSTREAM CG3609 INTERGENIC	TF binding site mE1_TFBS_cad
3R	18964652	3R_18964652_SNP [dm3] 3R_23138930_SNP [dm6]	T	C	4.563e^-5	0.95	INTRON hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12613406	2L_12613406_SNP [dm3] 2L_12613406_SNP [dm6]	T	A	4.589e^-5	0.95	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	16903274	3L_16903274_SNP [dm3] 3L_16910174_SNP [dm6]	C	A	4.674e^-5	0.95	INTRON Lmpt
2L	2372398	2L_2372398_SNP [dm3] 2L_2372398_SNP [dm6]	A	G	4.689e^-5	0.95	UPSTREAM CG3597 DOWNSTREAM CG3609 INTERGENIC	TF binding site mE1_TFBS_cad
3R	21859868	3R_21859868_SNP [dm3] 3R_26034146_SNP [dm6]	A	G	4.724e^-5	0.95	DOWNSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
2R	15464290	2R_15464290_SNP [dm3] 2R_19576785_SNP [dm6]	G	A	4.738e^-5	0.95	INTRON sm
2R	18540699	2R_18540699_SNP [dm3] 2R_22653194_SNP [dm6]	G	A	4.748e^-5	0.95	UTR_3_PRIME nsr DOWNSTREAM nsr INTRON Cyp6d2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21214530	3R_21214530_SNP [dm3] 3R_25388808_SNP [dm6]	C	T	4.758e^-5	0.95	INTRON Fur1	TF binding site BDTNP1_TFBS_dl
3R	22073468	3R_22073468_SNP [dm3] 3R_26247746_SNP [dm6]	T	C	4.763e^-5	0.95	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	1978627	2L_1978627_SNP [dm3] 2L_1978627_SNP [dm6]	T	C	4.978e^-5	0.963	SYNONYMOUS_CODING CG15356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6244594	3L_6244594_SNP [dm3] 3L_6251494_SNP [dm6]	G	A	5.018e^-5	0.963	SYNONYMOUS_CODING Best2
3L	10316673	3L_10316673_SNP [dm3] 3L_10323573_SNP [dm6]	A	G	5.085e^-5	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	22489253	3R_22489253_SNP [dm3] 3R_26663531_SNP [dm6]	G	A	5.122e^-5	0.963	INTRON beat-VII
2L	2372425	2L_2372425_DEL [dm3] 2L_2372425_DEL [dm6]	TAAAATAATTATTTGAAATA...	T	5.147e^-5	0.963	UPSTREAM CG3597 DOWNSTREAM CG3609 INTERGENIC	TF binding site mE1_TFBS_cad
X	2758883	X_2758883_SNP [dm3] X_2864850_SNP [dm6]	G	A	5.149e^-5	0.963	INTRON kirre
X	8046800	X_8046800_SNP [dm3] X_8152767_SNP [dm6]	A	T	5.280e^-5	0.963	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3048133	2L_3048133_SNP [dm3] 2L_3048133_SNP [dm6]	C	T	5.309e^-5	0.963	SYNONYMOUS_CODING v_2_k05816 UPSTREAM snRNA:U5:23D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2557660	2L_2557660_SNP [dm3] 2L_2557660_SNP [dm6]	T	C	5.323e^-5	0.963	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17567197	2L_17567197_SNP [dm3] 2L_17567197_SNP [dm6]	G	T	5.348e^-5	0.963	DOWNSTREAM mir-124 INTERGENIC
3L	5379669	3L_5379669_SNP [dm3] 3L_5386569_SNP [dm6]	T	G	5.425e^-5	0.963	INTERGENIC
3R	23559322	3R_23559322_SNP [dm3] 3R_27733600_SNP [dm6]	G	A	5.517e^-5	0.963	INTERGENIC
3R	10607660	3R_10607660_INS [dm3] 3R_14781938_INS [dm6]	C	CG	5.523e^-5	0.963	INTRON jvl
2R	5780076	2R_5780076_SNP [dm3] 2R_9892571_SNP [dm6]	A	G	5.543e^-5	0.963	UPSTREAM CG1513 INTRON CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5329922	3L_5329922_SNP [dm3] 3L_5336822_SNP [dm6]	A	G	5.657e^-5	0.973	INTERGENIC
X	8917698	X_8917698_SNP [dm3] X_9023665_SNP [dm6]	C	T	5.791e^-5	0.977	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7724639	2L_7724639_SNP [dm3] 2L_7724639_SNP [dm6]	A	G	5.878e^-5	0.977	SYNONYMOUS_CODING CG13795
2R	13834707	2R_13834707_DEL [dm3] 2R_17947202_DEL [dm6]	GG	G	5.917e^-5	0.977	INTERGENIC
2R	11770945	2R_11770945_SNP [dm3] 2R_15883440_SNP [dm6]	G	A	5.922e^-5	0.977	INTRON sli
3L	15025073	3L_15025073_SNP [dm3] 3L_15031973_SNP [dm6]	C	T	6.000e^-5	0.977	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6340800	2R_6340800_SNP [dm3] 2R_10453295_SNP [dm6]	C	A	6.021e^-5	0.977	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
2L	2372399	2L_2372399_SNP [dm3] 2L_2372399_SNP [dm6]	G	A	6.080e^-5	0.977	UPSTREAM CG3597 DOWNSTREAM CG3609 INTERGENIC	TF binding site mE1_TFBS_cad
X	2924894	X_2924894_SNP [dm3] X_3030861_SNP [dm6]	A	G	6.145e^-5	0.977	INTRON kirre
2R	5790488	2R_5790488_SNP [dm3] 2R_9902983_SNP [dm6]	A	T	6.199e^-5	0.977	INTRON CG1441
2R	5790578	2R_5790578_SNP [dm3] 2R_9903073_SNP [dm6]	C	G	6.199e^-5	0.977	INTRON CG1441
3R	1805999	3R_1805999_SNP [dm3] 3R_5980277_SNP [dm6]	G	A	6.280e^-5	0.982	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21320033	3L_21320033_SNP [dm3] 3L_21326933_SNP [dm6]	C	G	6.417e^-5	0.991	INTRON Rab26
3L	18118547	3L_18118547_SNP [dm3] 3L_18125447_SNP [dm6]	C	G	6.452e^-5	0.991	INTERGENIC
3R	20815247	3R_20815247_SNP [dm3] 3R_24989525_SNP [dm6]	A	G	6.627e^-5	0.991	INTRON tnc
2L	13077050	2L_13077050_SNP [dm3] 2L_13077050_SNP [dm6]	T	C	6.638e^-5	0.991	INTERGENIC
2R	7423409	2R_7423409_SNP [dm3] 2R_11535904_SNP [dm6]	A	G	6.816e^-5	0.991	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11897051	2R_11897051_SNP [dm3] 2R_16009546_SNP [dm6]	G	A	6.977e^-5	0.991	SYNONYMOUS_CODING CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	17570592	2L_17570592_SNP [dm3] 2L_17570592_SNP [dm6]	C	T	7.030e^-5	0.991	INTERGENIC
2L	5393823	2L_5393823_SNP [dm3] 2L_5393823_SNP [dm6]	C	T	7.147e^-5	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	2372236	2L_2372236_SNP [dm3] 2L_2372236_SNP [dm6]	G	C	7.182e^-5	0.991	UPSTREAM CG3597 DOWNSTREAM CG3609 INTERGENIC
3R	24953070	3R_24953070_SNP [dm3] 3R_29127348_SNP [dm6]	G	A	7.284e^-5	0.991	SYNONYMOUS_CODING CG11880	TF binding site mE1_TFBS_cad
2R	7654905	2R_7654905_SNP [dm3] 2R_11767400_SNP [dm6]	C	T	7.287e^-5	0.991	INTRON ths
3R	6613025	3R_6613025_SNP [dm3] 3R_10787303_SNP [dm6]	T	C	7.398e^-5	0.991	SYNONYMOUS_CODING Art1 DOWNSTREAM Rbp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	6345623	2R_6345623_SNP [dm3] 2R_10458118_SNP [dm6]	T	C	7.400e^-5	0.991	UTR_5_PRIME Cyp49a1 INTRON Galphao & 1 other
2L	4028644	2L_4028644_INS [dm3] 2L_4028644_INS [dm6]	A	AGAATA	7.464e^-5	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	20168402	2R_20168402_SNP [dm3] 2R_24280879_SNP [dm6]	G	T	7.478e^-5	0.991	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14388983	3R_14388983_SNP [dm3] 3R_18563261_SNP [dm6]	T	A	7.582e^-5	0.991	INTERGENIC
2L	18220825	2L_18220825_SNP [dm3] 2L_18220825_SNP [dm6]	A	T	7.660e^-5	0.991	INTRON CG42750
2R	6383899	2R_6383899_SNP [dm3] 2R_10496394_SNP [dm6]	A	G	7.670e^-5	0.991	UTR_3_PRIME lola INTRON lola
X	8683294	X_8683294_SNP [dm3] X_8789261_SNP [dm6]	C	G	7.758e^-5	0.991	INTRON Lim1
X	8046659	X_8046659_SNP [dm3] X_8152626_SNP [dm6]	C	A	7.793e^-5	0.991	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18982340	3R_18982340_SNP [dm3] 3R_23156618_SNP [dm6]	G	T	7.806e^-5	0.991	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	11008657	3R_11008657_SNP [dm3] 3R_15182935_SNP [dm6]	T	C	7.963e^-5	0.991	INTRON Gyc88E
3R	12134954	3R_12134954_SNP [dm3] 3R_16309232_SNP [dm6]	A	C	7.984e^-5	0.991	DOWNSTREAM Zip89B INTERGENIC
3R	7857072	3R_7857072_SNP [dm3] 3R_12031350_SNP [dm6]	A	G	8.031e^-5	0.991	SYNONYMOUS_CODING CG31358 UTR_5_PRIME CG42504 & 1 other
X	21351394	X_21351394_SNP [dm3] X_21480367_SNP [dm6]	T	A	8.202e^-5	0.991	UPSTREAM CR45509 DOWNSTREAM CR45510 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	5790435	2R_5790435_SNP [dm3] 2R_9902930_SNP [dm6]	G	A	8.221e^-5	0.991	INTRON CG1441	TF binding site mE1_TFBS_cad
X	14571199	X_14571199_SNP [dm3] X_14677166_SNP [dm6]	T	C	8.262e^-5	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5504241	3R_5504241_SNP [dm3] 3R_9678519_SNP [dm6]	G	T	8.346e^-5	0.991	DOWNSTREAM CG8358 INTRON CG16817	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16982266	3L_16982266_DEL [dm3] 3L_16989166_DEL [dm6]	TG	T	8.422e^-5	0.991	INTRON Exn
3L	3523604	3L_3523604_SNP [dm3] 3L_3523604_SNP [dm6]	T	C	8.439e^-5	0.991	INTRON Eip63E EXON CR45043	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	1868021	3R_1868021_SNP [dm3] 3R_6042299_SNP [dm6]	T	C	8.485e^-5	0.991	INTERGENIC
3R	13719951	3R_13719951_SNP [dm3] 3R_17894229_SNP [dm6]	C	A	8.600e^-5	0.991	SYNONYMOUS_CODING Rim INTRON Rim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	8046915	X_8046915_SNP [dm3] X_8152882_SNP [dm6]	C	G	8.623e^-5	0.991	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19443045	X_19443045_SNP [dm3] X_19549012_SNP [dm6]	G	T	8.789e^-5	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14041247	3R_14041247_MNP [dm3] 3R_18215525_MNP [dm6]	GAA	TTG	8.838e^-5	0.991	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
3L	14476511	3L_14476511_SNP [dm3] 3L_14483411_SNP [dm6]	C	A	8.842e^-5	0.991	INTRON bbg
2R	9736922	2R_9736922_SNP [dm3] 2R_13849417_SNP [dm6]	G	C	8.858e^-5	0.991	NON_SYNONYMOUS_CODING CG30484 UPSTREAM CG30485
3L	7572376	3L_7572376_SNP [dm3] 3L_7579276_SNP [dm6]	G	A	8.977e^-5	0.991	INTERGENIC
2R	6260937	2R_6260937_SNP [dm3] 2R_10373432_SNP [dm6]	T	A	9.111e^-5	0.991	INTRON CG42732
3R	8134416	3R_8134416_SNP [dm3] 3R_12308694_SNP [dm6]	C	G	9.137e^-5	0.991	INTERGENIC
X	14291336	X_14291336_SNP [dm3] X_14397303_SNP [dm6]	C	G	9.160e^-5	0.991	INTRON dpr8
2R	11896757	2R_11896757_DEL [dm3] 2R_16009252_DEL [dm6]	CCAGC	ATAA	9.188e^-5	0.991	DOWNSTREAM CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12663213	2L_12663213_SNP [dm3] 2L_12663213_SNP [dm6]	C	A	9.236e^-5	0.991	INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20576359	3L_20576359_SNP [dm3] 3L_20583259_SNP [dm6]	A	G	9.362e^-5	0.991	INTERGENIC
3L	9504690	3L_9504690_SNP [dm3] 3L_9511590_SNP [dm6]	T	C	9.394e^-5	0.991	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
X	15315284	X_15315284_SNP [dm3] X_15421251_SNP [dm6]	C	T	9.407e^-5	0.991	UTR_5_PRIME Cngl
3R	21228442	3R_21228442_SNP [dm3] 3R_25402720_SNP [dm6]	C	T	9.447e^-5	0.991	INTRON Fur1
2L	5461968	2L_5461968_SNP [dm3] 2L_5461968_SNP [dm6]	T	A	9.456e^-5	0.991	SYNONYMOUS_CODING mid	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10709702	3L_10709702_SNP [dm3] 3L_10716602_SNP [dm6]	T	A	9.513e^-5	0.991	INTERGENIC
3R	26831149	3R_26831149_SNP [dm3] 3R_31005427_SNP [dm6]	A	G	9.557e^-5	0.991	INTRON 5-HT7
3R	25387833	3R_25387833_SNP [dm3] 3R_29562111_SNP [dm6]	T	G	9.577e^-5	0.991	INTRON Dr
3L	5379680	3L_5379680_SNP [dm3] 3L_5386580_SNP [dm6]	C	T	9.591e^-5	0.991	INTERGENIC
3R	14388987	3R_14388987_SNP [dm3] 3R_18563265_SNP [dm6]	C	T	9.713e^-5	0.991	DOWNSTREAM CG43210 & 1 other INTERGENIC
3L	11016484	3L_11016484_DEL [dm3] 3L_11023384_DEL [dm6]	TTAATTTGTAATTTGT...	T	9.765e^-5	0.991	UPSTREAM Fad2 INTERGENIC	regulatory region REDfly_CRMs
3R	14388986	3R_14388986_SNP [dm3] 3R_18563264_SNP [dm6]	G	T	9.792e^-5	0.991	DOWNSTREAM CG43210 & 1 other INTERGENIC
2R	19707848	2R_19707848_SNP [dm3] 2R_23820325_SNP [dm6]	G	A	9.990e^-5	0.991	UPSTREAM CG5549 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2556881	2L_2556881_SNP [dm3] 2L_2556881_SNP [dm6]	T	A	1.005e^-4	0.991	DOWNSTREAM CR44113 INTERGENIC
X	10970926	X_10970926_SNP [dm3] X_11076893_SNP [dm6]	C	T	1.005e^-4	0.991	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	18982411	3R_18982411_DEL [dm3] 3R_23156689_DEL [dm6]	TAAAACCGCT	T	1.014e^-4	0.991	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	6244650	3L_6244650_SNP [dm3] 3L_6251550_SNP [dm6]	A	T	1.017e^-4	0.991	INTRON Best2
2R	5783795	2R_5783795_SNP [dm3] 2R_9896290_SNP [dm6]	C	A	1.023e^-4	0.991	NON_SYNONYMOUS_CODING CG30007
2L	12618865	2L_12618865_SNP [dm3] 2L_12618865_SNP [dm6]	A	C	1.025e^-4	0.991	UTR_5_PRIME nub INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14481940	3R_14481940_SNP [dm3] 3R_18656218_SNP [dm6]	G	A	1.032e^-4	0.991	NON_SYNONYMOUS_CODING CG31224	TF binding site mE1_TFBS_cad
X	5491842	X_5491842_SNP [dm3] X_5597809_SNP [dm6]	T	A	1.067e^-4	0.991	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18432883	3L_18432883_SNP [dm3] 3L_18439783_SNP [dm6]	T	C	1.071e^-4	0.991	SYNONYMOUS_CODING skl UPSTREAM CR43280	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9639349	3L_9639349_SNP [dm3] 3L_9646249_SNP [dm6]	G	C	1.079e^-4	0.991	INTRON fry & 1 other
2R	15464318	2R_15464318_SNP [dm3] 2R_19576813_SNP [dm6]	A	C	1.079e^-4	0.991	INTRON sm
X	9786732	X_9786732_SNP [dm3] X_9892699_SNP [dm6]	C	T	1.079e^-4	0.991	INTRON CG15249
2L	3003605	2L_3003605_SNP [dm3] 2L_3003605_SNP [dm6]	G	C	1.084e^-4	0.991	INTRON CG17265	TF binding site mE1_TFBS_cad
2L	16600895	2L_16600895_SNP [dm3] 2L_16600895_SNP [dm6]	T	A	1.094e^-4	0.991	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	16024265	2R_16024265_SNP [dm3] 2R_20136760_SNP [dm6]	A	G	1.108e^-4	0.991	UPSTREAM CR44635 DOWNSTREAM CR44634 INTERGENIC
2R	16605901	2R_16605901_SNP [dm3] 2R_20718396_SNP [dm6]	A	G	1.115e^-4	0.991	INTRON dpr
3L	8912437	3L_8912437_SNP [dm3] 3L_8919337_SNP [dm6]	T	C	1.134e^-4	0.991	INTRON Tsp66E
2R	5713048	2R_5713048_SNP [dm3] 2R_9825543_SNP [dm6]	G	A	1.145e^-4	0.991	SYNONYMOUS_CODING dila	TF binding site mE1_TFBS_cad
3R	17399899	3R_17399899_SNP [dm3] 3R_21574177_SNP [dm6]	A	G	1.145e^-4	0.991	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5785090	2R_5785090_SNP [dm3] 2R_9897585_SNP [dm6]	T	C	1.146e^-4	0.991	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17377660	2R_17377660_SNP [dm3] 2R_21490155_SNP [dm6]	A	T	1.171e^-4	0.991	INTRON Fkbp14
2R	17645106	2R_17645106_SNP [dm3] 2R_21757601_SNP [dm6]	T	C	1.182e^-4	0.991	SYNONYMOUS_CODING Grx-1
X	8046765	X_8046765_SNP [dm3] X_8152732_SNP [dm6]	T	C	1.190e^-4	0.991	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8284613	3R_8284613_SNP [dm3] 3R_12458891_SNP [dm6]	T	A	1.200e^-4	0.991	NON_SYNONYMOUS_CODING CG5961 DOWNSTREAM trus	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8046680	X_8046680_DEL [dm3] X_8152647_DEL [dm6]	TTA	G	1.201e^-4	0.991	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5779845	2R_5779845_SNP [dm3] 2R_9892340_SNP [dm6]	A	T	1.204e^-4	0.991	NON_SYNONYMOUS_CODING CG30007 UPSTREAM CG1513	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22742782	3R_22742782_SNP [dm3] 3R_26917060_SNP [dm6]	G	A	1.222e^-4	0.991	INTRON sda
3R	7278954	3R_7278954_SNP [dm3] 3R_11453232_SNP [dm6]	G	A	1.231e^-4	0.991	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
X	2924827	X_2924827_SNP [dm3] X_3030794_SNP [dm6]	G	C	1.232e^-4	0.991	INTRON kirre
3L	2500183	3L_2500183_SNP [dm3] 3L_2500183_SNP [dm6]	T	G	1.235e^-4	0.991	SYNONYMOUS_CODING CG16758 DOWNSTREAM CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19607309	2L_19607309_SNP [dm3] 2L_19607309_SNP [dm6]	C	T	1.236e^-4	0.991	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	2370586	2L_2370586_SNP [dm3] 2L_2370586_SNP [dm6]	C	A	1.264e^-4	0.991	DOWNSTREAM Axud1 INTRON CG3597	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18329960	3R_18329960_SNP [dm3] 3R_22504238_SNP [dm6]	C	T	1.274e^-4	0.991	INTRON Octbeta1R	TF binding site mE1_TFBS_cad
2R	17760048	2R_17760048_SNP [dm3] 2R_21872543_SNP [dm6]	T	C	1.274e^-4	0.991	UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2353763	2L_2353763_SNP [dm3] 2L_2353763_SNP [dm6]	C	T	1.275e^-4	0.991	SPLICE_SITE_REGION eys INTRON CG9967 & 1 other	TF binding site mE1_TFBS_chinmo
2L	1977808	2L_1977808_SNP [dm3] 2L_1977808_SNP [dm6]	G	T	1.280e^-4	0.991	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23559333	3R_23559333_SNP [dm3] 3R_27733611_SNP [dm6]	C	A	1.294e^-4	0.991	INTERGENIC
2R	15464313	2R_15464313_INS [dm3] 2R_19576808_INS [dm6]	A	AA	1.300e^-4	0.991	INTRON sm
2R	5785120	2R_5785120_SNP [dm3] 2R_9897615_SNP [dm6]	C	T	1.302e^-4	0.991	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24958895	3R_24958895_DEL [dm3] 3R_29133173_DEL [dm6]	CC	C	1.333e^-4	0.991	INTRON Vha100-1
2L	2557292	2L_2557292_SNP [dm3] 2L_2557292_SNP [dm6]	T	A	1.336e^-4	0.991	INTERGENIC
2L	15304056	2L_15304056_SNP [dm3] 2L_15304056_SNP [dm6]	G	A	1.341e^-4	0.991	INTERGENIC
2L	12117536	2L_12117536_SNP [dm3] 2L_12117536_SNP [dm6]	T	A	1.378e^-4	0.991	INTRON CG17211
3R	14389035	3R_14389035_SNP [dm3] 3R_18563313_SNP [dm6]	T	C	1.389e^-4	0.991	DOWNSTREAM CG43210 & 1 other INTERGENIC
3R	6626263	3R_6626263_SNP [dm3] 3R_10800541_SNP [dm6]	A	G	1.401e^-4	0.991	SPLICE_SITE_REGION CG14692 INTRON CG14692
2L	11414421	2L_11414421_SNP [dm3] 2L_11414421_SNP [dm6]	A	G	1.411e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9043535	2R_9043535_SNP [dm3] 2R_13156030_SNP [dm6]	G	T	1.417e^-4	0.991	INTRON TppII
3R	15458991	3R_15458991_SNP [dm3] 3R_19633269_SNP [dm6]	T	C	1.422e^-4	0.991	UPSTREAM CG6231 DOWNSTREAM subdued INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18982582	3R_18982582_SNP [dm3] 3R_23156860_SNP [dm6]	T	C	1.432e^-4	0.991	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	19133087	3R_19133087_SNP [dm3] 3R_23307365_SNP [dm6]	A	T	1.438e^-4	0.991	INTRON pnt
3R	6603105	3R_6603105_SNP [dm3] 3R_10777383_SNP [dm6]	C	T	1.448e^-4	0.991	UPSTREAM CG45076 & 2 others INTERGENIC
2L	2363782	2L_2363782_SNP [dm3] 2L_2363782_SNP [dm6]	A	G	1.451e^-4	0.991	UPSTREAM Rab5 INTRON Rab5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2056598	2L_2056598_SNP [dm3] 2L_2056598_SNP [dm6]	C	G	1.458e^-4	0.991	INTRON Or22c
2L	13062800	2L_13062800_SNP [dm3] 2L_13062800_SNP [dm6]	T	C	1.458e^-4	0.991	INTERGENIC
2L	16168150	2L_16168150_SNP [dm3] 2L_16168150_SNP [dm6]	A	T	1.459e^-4	0.991	UPSTREAM Ca-alpha1D INTRON Ca-alpha1D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23548439	3R_23548439_SNP [dm3] 3R_27722717_SNP [dm6]	C	T	1.459e^-4	0.991	INTERGENIC
3L	9639380	3L_9639380_SNP [dm3] 3L_9646280_SNP [dm6]	A	T	1.465e^-4	0.991	INTRON fry & 1 other
2L	2121132	2L_2121132_SNP [dm3] 2L_2121132_SNP [dm6]	C	T	1.479e^-4	0.991	INTERGENIC
2R	20168690	2R_20168690_SNP [dm3] 2R_24281167_SNP [dm6]	A	G	1.485e^-4	0.991	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	8378775	2L_8378775_SNP [dm3] 2L_8378775_SNP [dm6]	T	C	1.493e^-4	0.991	NON_SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG17294	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8429314	2R_8429314_SNP [dm3] 2R_12541809_SNP [dm6]	C	T	1.498e^-4	0.991	INTRON fra
3R	15373339	3R_15373339_SNP [dm3] 3R_19547617_SNP [dm6]	C	T	1.500e^-4	0.991	INTRON Dys
3L	16760164	3L_16760164_DEL [dm3] 3L_16767064_DEL [dm6]	CC	C	1.508e^-4	0.991	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	2373087	2L_2373087_SNP [dm3] 2L_2373087_SNP [dm6]	T	G	1.509e^-4	0.991	INTRON CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2373019	2L_2373019_SNP [dm3] 2L_2373019_SNP [dm6]	G	A	1.526e^-4	0.991	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8256600	3L_8256600_SNP [dm3] 3L_8263500_SNP [dm6]	T	C	1.534e^-4	0.991	INTRON Dscam4
2R	17760093	2R_17760093_SNP [dm3] 2R_21872588_SNP [dm6]	T	G	1.537e^-4	0.991	UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	17569891	2L_17569891_SNP [dm3] 2L_17569891_SNP [dm6]	T	A	1.540e^-4	0.991	INTERGENIC
2L	8442799	2L_8442799_SNP [dm3] 2L_8442799_SNP [dm6]	T	A	1.545e^-4	0.991	NON_SYNONYMOUS_CODING CG31897 DOWNSTREAM mus201
3R	12443738	3R_12443738_SNP [dm3] 3R_16618016_SNP [dm6]	G	A	1.558e^-4	0.991	SYNONYMOUS_CODING CG17560 UPSTREAM mir-2494 DOWNSTREAM CG17562
2L	3000229	2L_3000229_SNP [dm3] 2L_3000229_SNP [dm6]	A	G	1.567e^-4	0.991	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19600152	2R_19600152_SNP [dm3] 2R_23712629_SNP [dm6]	A	G	1.589e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2924670	X_2924670_SNP [dm3] X_3030637_SNP [dm6]	A	C	1.589e^-4	0.991	INTRON kirre
X	14402067	X_14402067_SNP [dm3] X_14508034_SNP [dm6]	T	G	1.599e^-4	0.991	INTERGENIC
2L	2355450	2L_2355450_SNP [dm3] 2L_2355450_SNP [dm6]	T	A	1.602e^-4	0.991	INTRON CG9967 & 1 other
2R	15753227	2R_15753227_SNP [dm3] 2R_19865722_SNP [dm6]	C	A	1.609e^-4	0.991	INTRON Obp56i
2R	5786805	2R_5786805_SNP [dm3] 2R_9899300_SNP [dm6]	A	T	1.611e^-4	0.991	DOWNSTREAM CG30007 INTRON CG1441	TF binding site mE1_TFBS_cad
3L	1891723	3L_1891723_SNP [dm3] 3L_1891723_SNP [dm6]	A	T	1.629e^-4	0.991	DOWNSTREAM Tmhs INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9736966	2R_9736966_SNP [dm3] 2R_13849461_SNP [dm6]	A	G	1.636e^-4	0.991	SPLICE_SITE_REGION CG30484 UPSTREAM CG30485 INTRON CG30484
3R	15061872	3R_15061872_SNP [dm3] 3R_19236150_SNP [dm6]	A	T	1.646e^-4	0.991	INTRON unc79
2R	7126442	2R_7126442_SNP [dm3] 2R_11238937_SNP [dm6]	A	C	1.647e^-4	0.991	SYNONYMOUS_CODING CG13216 DOWNSTREAM CG13215	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	2363759	2L_2363759_SNP [dm3] 2L_2363759_SNP [dm6]	T	A	1.649e^-4	0.991	UPSTREAM Rab5 INTRON Rab5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5791080	2R_5791080_SNP [dm3] 2R_9903575_SNP [dm6]	C	T	1.655e^-4	0.991	UPSTREAM CG1441 INTERGENIC	enhancer mE1_CBP_Enhancers
3R	10185242	3R_10185242_SNP [dm3] 3R_14359520_SNP [dm6]	C	T	1.671e^-4	0.991	NON_SYNONYMOUS_CODING CG31320 INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17375378	3L_17375378_SNP [dm3] 3L_17382278_SNP [dm6]	A	T	1.672e^-4	0.991	NON_SYNONYMOUS_CODING CG13728	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	19876284	X_19876284_SNP [dm3] X_19982251_SNP [dm6]	T	C	1.678e^-4	0.991	INTERGENIC
X	2924663	X_2924663_SNP [dm3] X_3030630_SNP [dm6]	G	C	1.679e^-4	0.991	INTRON kirre
3L	4029386	3L_4029386_SNP [dm3] 3L_4029386_SNP [dm6]	G	A	1.684e^-4	0.991	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c DOWNSTREAM Gr64a
2L	18220826	2L_18220826_SNP [dm3] 2L_18220826_SNP [dm6]	C	T	1.689e^-4	0.991	INTRON CG42750
3R	22453244	3R_22453244_SNP [dm3] 3R_26627522_SNP [dm6]	C	G	1.700e^-4	0.991	UPSTREAM TwdlO DOWNSTREAM TwdlK INTERGENIC
X	3783289	X_3783289_SNP [dm3] X_3889256_SNP [dm6]	T	C	1.701e^-4	0.991	SYNONYMOUS_CODING CG15239	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5542694	2L_5542694_SNP [dm3] 2L_5542694_SNP [dm6]	A	C	1.702e^-4	0.991	UPSTREAM Lam & 1 other INTRON Lam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	13089217	3L_13089217_SNP [dm3] 3L_13096117_SNP [dm6]	G	A	1.712e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	18438188	3L_18438188_SNP [dm3] 3L_18445088_SNP [dm6]	C	A	1.714e^-4	0.991	INTERGENIC
3L	19965256	3L_19965256_SNP [dm3] 3L_19972156_SNP [dm6]	T	A	1.717e^-4	0.991	INTRON Ac76E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	9748173	3R_9748173_SNP [dm3] 3R_13922451_SNP [dm6]	G	C	1.729e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6660578	2R_6660578_SNP [dm3] 2R_10773073_SNP [dm6]	T	C	1.739e^-4	0.991	INTRON CG33144
2L	12618840	2L_12618840_SNP [dm3] 2L_12618840_SNP [dm6]	A	T	1.744e^-4	0.991	UTR_5_PRIME nub INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13386512	3L_13386512_SNP [dm3] 3L_13393412_SNP [dm6]	T	G	1.754e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	5783798	2R_5783798_SNP [dm3] 2R_9896293_SNP [dm6]	G	T	1.755e^-4	0.991	NON_SYNONYMOUS_CODING CG30007
3L	18577747	3L_18577747_SNP [dm3] 3L_18584647_SNP [dm6]	G	T	1.758e^-4	0.991	DOWNSTREAM CR45435 INTERGENIC
3R	23566075	3R_23566075_SNP [dm3] 3R_27740353_SNP [dm6]	T	G	1.762e^-4	0.991	INTRON Ets98B
3L	6303062	3L_6303062_DEL [dm3] 3L_6309962_DEL [dm6]	AA	A	1.763e^-4	0.991	INTERGENIC
3L	14198287	3L_14198287_SNP [dm3] 3L_14205187_SNP [dm6]	T	A	1.781e^-4	0.991	UPSTREAM nuf DOWNSTREAM CG32141 INTRON nuf	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8046606	X_8046606_SNP [dm3] X_8152573_SNP [dm6]	G	A	1.788e^-4	0.991	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8817242	3L_8817242_SNP [dm3] 3L_8824142_SNP [dm6]	C	A	1.797e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	19712753	2R_19712753_SNP [dm3] 2R_23825230_SNP [dm6]	C	T	1.801e^-4	0.991	UPSTREAM CG4763 INTRON CG5549
2L	4851363	2L_4851363_SNP [dm3] 2L_4851363_SNP [dm6]	C	A	1.803e^-4	0.991	UPSTREAM mRpS2 INTRON Mon1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	2358817	2L_2358817_SNP [dm3] 2L_2358817_SNP [dm6]	T	C	1.828e^-4	0.991	UTR_3_PRIME eys DOWNSTREAM Rab5 & 1 other
2L	15946464	2L_15946464_INS [dm3] 2L_15946464_INS [dm6]	G	GGG	1.833e^-4	0.991	INTRON beat-Ib
2L	20135615	2L_20135615_SNP [dm3] 2L_20135615_SNP [dm6]	C	A	1.837e^-4	0.991	UPSTREAM CG10651 INTERGENIC
X	15679640	X_15679640_SNP [dm3] X_15785607_SNP [dm6]	A	T	1.841e^-4	0.991	UPSTREAM mRpS30 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	2924664	X_2924664_SNP [dm3] X_3030631_SNP [dm6]	T	A	1.841e^-4	0.991	INTRON kirre
2R	17955145	2R_17955145_SNP [dm3] 2R_22067640_SNP [dm6]	C	T	1.841e^-4	0.991	SYNONYMOUS_CODING CG44249 UPSTREAM Snp INTRON Snp	TF binding site mE1_TFBS_sens
X	10970752	X_10970752_SNP [dm3] X_11076719_SNP [dm6]	A	C	1.850e^-4	0.991	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
2L	3419728	2L_3419728_SNP [dm3] 2L_3419728_SNP [dm6]	G	T	1.851e^-4	0.991	INTRON pgant2
2L	3000226	2L_3000226_SNP [dm3] 2L_3000226_SNP [dm6]	A	G	1.852e^-4	0.991	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5785084	2R_5785084_SNP [dm3] 2R_9897579_SNP [dm6]	C	A	1.878e^-4	0.991	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2689735	2L_2689735_SNP [dm3] 2L_2689735_SNP [dm6]	A	C	1.879e^-4	0.991	INTRON CG31690
3R	18982406	3R_18982406_SNP [dm3] 3R_23156684_SNP [dm6]	A	T	1.887e^-4	0.991	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
2R	6637317	2R_6637317_SNP [dm3] 2R_10749812_SNP [dm6]	T	A	1.891e^-4	0.991	INTRON CG33144
2L	4576327	2L_4576327_SNP [dm3] 2L_4576327_SNP [dm6]	A	G	1.894e^-4	0.991	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17819273	X_17819273_SNP [dm3] X_17925240_SNP [dm6]	A	T	1.898e^-4	0.991	UTR_3_PRIME Sh
3L	18438215	3L_18438215_SNP [dm3] 3L_18445115_SNP [dm6]	G	A	1.900e^-4	0.991	INTERGENIC
3L	10709695	3L_10709695_MNP [dm3] 3L_10716595_MNP [dm6]	AAAAAT	TTGGGA	1.903e^-4	0.991	INTERGENIC
2L	5207028	2L_5207028_DEL [dm3] 2L_5207028_DEL [dm6]	GTTT	G	1.909e^-4	0.991	UPSTREAM Cyp28d2 DOWNSTREAM snmRNA:158 & 1 other INTERGENIC
3L	1678889	3L_1678889_SNP [dm3] 3L_1678889_SNP [dm6]	A	G	1.917e^-4	0.991	INTRON CG7991	TF binding site mE1_TFBS_chinmo
X	5362298	X_5362298_INS [dm3] X_5468265_INS [dm6]	G	GG	1.922e^-4	0.991	INTRON SPR
X	2619834	X_2619834_SNP [dm3] X_2725801_SNP [dm6]	A	G	1.923e^-4	0.991	SYNONYMOUS_CODING fs_1_Ya UPSTREAM CG2709	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2744048	2R_2744048_SNP [dm3] 2R_6856543_SNP [dm6]	G	C	1.927e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18982542	3R_18982542_SNP [dm3] 3R_23156820_SNP [dm6]	A	G	1.928e^-4	0.991	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12947356	3L_12947356_SNP [dm3] 3L_12954256_SNP [dm6]	G	A	1.931e^-4	0.991	SYNONYMOUS_CODING CG10752	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4650232	2L_4650232_SNP [dm3] 2L_4650232_SNP [dm6]	T	C	1.931e^-4	0.991	INTERGENIC
3R	22490288	3R_22490288_SNP [dm3] 3R_26664566_SNP [dm6]	G	T	1.931e^-4	0.991	INTRON beat-VII	TF binding site BDTNP1_TFBS_twi
2R	18540139	2R_18540139_SNP [dm3] 2R_22652634_SNP [dm6]	C	T	1.939e^-4	0.991	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
3R	14106886	3R_14106886_SNP [dm3] 3R_18281164_SNP [dm6]	T	C	1.941e^-4	0.991	INTRON eIF-1A
3L	11018009	3L_11018009_SNP [dm3] 3L_11024909_SNP [dm6]	C	T	1.948e^-4	0.991	UPSTREAM CG32079 DOWNSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26699273	3R_26699273_SNP [dm3] 3R_30873551_SNP [dm6]	T	C	1.949e^-4	0.991	DOWNSTREAM CG15546 INTERGENIC
2R	12766026	2R_12766026_SNP [dm3] 2R_16878521_SNP [dm6]	G	A	1.950e^-4	0.991	INTRON CG8910
X	5398567	X_5398567_SNP [dm3] X_5504534_SNP [dm6]	G	A	1.963e^-4	0.991	INTERGENIC
3R	1931107	3R_1931107_SNP [dm3] 3R_6105385_SNP [dm6]	T	C	1.966e^-4	0.991	UPSTREAM CR44929 INTERGENIC	regulatory region REDfly_CRMs
3R	18352144	3R_18352144_SNP [dm3] 3R_22526422_SNP [dm6]	G	A	1.970e^-4	0.991	INTRON CG5346
3L	14984698	3L_14984698_SNP [dm3] 3L_14991598_SNP [dm6]	A	T	1.979e^-4	0.991	UTR_3_PRIME mnd UPSTREAM Zip71B
2R	15222120	2R_15222120_SNP [dm3] 2R_19334615_SNP [dm6]	A	G	1.985e^-4	0.991	INTRON Rgk1 & 1 other
X	7981510	X_7981510_INS [dm3] X_8087477_INS [dm6]	T	TT	1.986e^-4	0.991	UPSTREAM CG2256 DOWNSTREAM Ubc-E2H INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8838742	3L_8838742_SNP [dm3] 3L_8845642_SNP [dm6]	G	T	1.986e^-4	0.991	INTRON dally
3L	13464370	3L_13464370_SNP [dm3] 3L_13471270_SNP [dm6]	A	T	1.987e^-4	0.991	INTRON CG10089
3L	1652412	3L_1652412_SNP [dm3] 3L_1652412_SNP [dm6]	A	T	1.998e^-4	0.991	SYNONYMOUS_CODING CG7967 UPSTREAM CG7970 DOWNSTREAM CG13920	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11021050	3L_11021050_SNP [dm3] 3L_11027950_SNP [dm6]	C	G	2.000e^-4	0.991	DOWNSTREAM CG32079 INTRON CG32081
3L	14229915	3L_14229915_DEL [dm3] 3L_14236815_DEL [dm6]	TTATATAGAACACAGGGAA...	T	2.005e^-4	0.991	UPSTREAM CG34244 INTRON CG7906	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5783305	2R_5783305_SNP [dm3] 2R_9895800_SNP [dm6]	C	A	2.008e^-4	0.991	NON_SYNONYMOUS_CODING CG30007
2L	3628062	2L_3628062_SNP [dm3] 2L_3628062_SNP [dm6]	C	G	2.021e^-4	0.991	INTRON for
2R	9731840	2R_9731840_SNP [dm3] 2R_13844335_SNP [dm6]	C	A	2.030e^-4	0.991	INTRON Syngr
2R	19063283	2R_19063283_SNP [dm3] 2R_23175760_SNP [dm6]	C	A	2.034e^-4	0.991	INTRON CG34371
2L	5425324	2L_5425324_DEL [dm3] 2L_5425324_DEL [dm6]	GG	G	2.036e^-4	0.991	INTERGENIC
2L	12673331	2L_12673331_SNP [dm3] 2L_12673331_SNP [dm6]	C	T	2.038e^-4	0.991	SYNONYMOUS_CODING pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6602076	3R_6602076_SNP [dm3] 3R_10776354_SNP [dm6]	G	A	2.044e^-4	0.991	INTRON CG45076 & 2 others	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5811995	2R_5811995_SNP [dm3] 2R_9924490_SNP [dm6]	G	T	2.051e^-4	0.991	INTRON Mef2
3R	19133240	3R_19133240_SNP [dm3] 3R_23307518_SNP [dm6]	G	T	2.057e^-4	0.991	INTRON pnt
2L	20355332	2L_20355332_SNP [dm3] 2L_20355332_SNP [dm6]	T	C	2.062e^-4	0.991	INTRON RtGEF	TF binding site mE1_TFBS_cad
2L	4040517	2L_4040517_SNP [dm3] 2L_4040517_SNP [dm6]	A	G	2.067e^-4	0.991	INTRON ed
3R	12090128	3R_12090128_SNP [dm3] 3R_16264406_SNP [dm6]	T	C	2.068e^-4	0.991	SYNONYMOUS_CODING asun UPSTREAM bor	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	10970746	X_10970746_SNP [dm3] X_11076713_SNP [dm6]	G	C	2.086e^-4	0.991	NON_SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3L	18438201	3L_18438201_SNP [dm3] 3L_18445101_SNP [dm6]	C	G	2.089e^-4	0.991	INTERGENIC
2L	2994875	2L_2994875_SNP [dm3] 2L_2994875_SNP [dm6]	C	T	2.094e^-4	0.991	SYNONYMOUS_CODING CG3558
3R	2667732	3R_2667732_SNP [dm3] 3R_6842010_SNP [dm6]	T	C	2.101e^-4	0.991	SYNONYMOUS_CODING Scr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21265064	3R_21265064_SNP [dm3] 3R_25439342_SNP [dm6]	A	G	2.109e^-4	0.991	INTRON Fur1
3L	10709659	3L_10709659_SNP [dm3] 3L_10716559_SNP [dm6]	C	G	2.111e^-4	0.991	INTERGENIC
X	2399016	X_2399016_SNP [dm3] X_2504983_SNP [dm6]	A	G	2.113e^-4	0.991	INTRON trol	TF binding site mE1_TFBS_cad
3R	21214362	3R_21214362_SNP [dm3] 3R_25388640_SNP [dm6]	A	T	2.118e^-4	0.991	INTRON Fur1	TF binding site BDTNP1_TFBS_dl
2R	11913905	2R_11913905_SNP [dm3] 2R_16026400_SNP [dm6]	G	A	2.122e^-4	0.991	SYNONYMOUS_CODING casp
X	17152795	X_17152795_SNP [dm3] X_17258762_SNP [dm6]	C	G	2.126e^-4	0.991	UPSTREAM f INTRON f	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5786824	2R_5786824_SNP [dm3] 2R_9899319_SNP [dm6]	T	A	2.127e^-4	0.991	DOWNSTREAM CG30007 INTRON CG1441	TF binding site mE1_TFBS_cad
3L	890981	3L_890981_SNP [dm3] 3L_890981_SNP [dm6]	G	A	2.127e^-4	0.991	UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1146874	2L_1146874_SNP [dm3] 2L_1146874_SNP [dm6]	T	C	2.129e^-4	0.991	UPSTREAM CG4749 INTRON MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2363758	2L_2363758_SNP [dm3] 2L_2363758_SNP [dm6]	T	C	2.132e^-4	0.991	UPSTREAM Rab5 INTRON Rab5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2363763	2L_2363763_DEL [dm3] 2L_2363763_DEL [dm6]	AGCA	A	2.140e^-4	0.991	UPSTREAM Rab5 INTRON Rab5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20135706	2L_20135706_SNP [dm3] 2L_20135706_SNP [dm6]	G	C	2.143e^-4	0.991	UPSTREAM CG10651 INTERGENIC
3L	12992019	3L_12992019_SNP [dm3] 3L_12998919_SNP [dm6]	A	G	2.147e^-4	0.991	INTERGENIC
3R	15203155	3R_15203155_SNP [dm3] 3R_19377433_SNP [dm6]	T	C	2.161e^-4	0.991	UPSTREAM CG31245 INTRON Ino80
2R	14090015	2R_14090015_SNP [dm3] 2R_18202510_SNP [dm6]	G	T	2.162e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16200583	3L_16200583_SNP [dm3] 3L_16207483_SNP [dm6]	A	G	2.166e^-4	0.991	INTERGENIC
3L	11005187	3L_11005187_INS [dm3] 3L_11012087_INS [dm6]	T	TT	2.170e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	5311108	3R_5311108_SNP [dm3] 3R_9485386_SNP [dm6]	A	T	2.174e^-4	0.991	INTRON CG16779
3L	6984833	3L_6984833_SNP [dm3] 3L_6991733_SNP [dm6]	C	A	2.175e^-4	0.991	SYNONYMOUS_CODING bin	TF binding site mE1_TFBS_chinmo
3R	3964138	3R_3964138_SNP [dm3] 3R_8138416_SNP [dm6]	A	G	2.207e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1620396	3L_1620396_SNP [dm3] 3L_1620396_SNP [dm6]	G	T	2.208e^-4	0.991	UTR_3_PRIME CG33230 INTRON ABCB7
3R	20815330	3R_20815330_SNP [dm3] 3R_24989608_SNP [dm6]	G	C	2.224e^-4	0.991	INTRON tnc
X	13838957	X_13838957_SNP [dm3] X_13944924_SNP [dm6]	T	C	2.227e^-4	0.991	INTRON mamo
2R	11901179	2R_11901179_SNP [dm3] 2R_16013674_SNP [dm6]	G	A	2.237e^-4	0.991	UTR_3_PRIME CG8389 DOWNSTREAM Prosbeta1
3R	21214441	3R_21214441_SNP [dm3] 3R_25388719_SNP [dm6]	G	T	2.242e^-4	0.991	INTRON Fur1	TF binding site BDTNP1_TFBS_dl
3R	15458884	3R_15458884_SNP [dm3] 3R_19633162_SNP [dm6]	G	C	2.245e^-4	0.991	UPSTREAM CG6231 DOWNSTREAM subdued INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9212189	3R_9212189_SNP [dm3] 3R_13386467_SNP [dm6]	G	A	2.254e^-4	0.991	NON_SYNONYMOUS_CODING CG9799	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1872944	2L_1872944_SNP [dm3] 2L_1872944_SNP [dm6]	T	G	2.265e^-4	0.991	INTRON CG31663 EXON CR44075
3R	20445561	3R_20445561_SNP [dm3] 3R_24619839_SNP [dm6]	A	G	2.266e^-4	0.991	SYNONYMOUS_CODING mld	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	23566332	3R_23566332_INS [dm3] 3R_27740610_INS [dm6]	T	TAT	2.272e^-4	0.991	INTRON Ets98B
3L	10709642	3L_10709642_SNP [dm3] 3L_10716542_SNP [dm6]	G	T	2.292e^-4	0.991	INTERGENIC
2L	7147769	2L_7147769_SNP [dm3] 2L_7147769_SNP [dm6]	G	T	2.309e^-4	0.991	INTRON Pvf3	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	14520871	2R_14520871_DEL [dm3] 2R_18633366_DEL [dm6]	AC	A	2.311e^-4	0.991	SPLICE_SITE_REGION CG30122 INTRON CG30122
2L	18316577	2L_18316577_SNP [dm3] 2L_18316577_SNP [dm6]	C	A	2.314e^-4	0.991	INTERGENIC
2L	1147090	2L_1147090_SNP [dm3] 2L_1147090_SNP [dm6]	C	T	2.318e^-4	0.991	UTR_3_PRIME MFS3 UPSTREAM CG4749	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7634119	3L_7634119_SNP [dm3] 3L_7641019_SNP [dm6]	G	A	2.320e^-4	0.991	SYNONYMOUS_CODING CG7506 UPSTREAM CG33276	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15884052	2L_15884052_INS [dm3] 2L_15884052_INS [dm6]	C	CCTCGCCACCC...	2.321e^-4	0.991	UPSTREAM CG44475 INTERGENIC
X	9299177	X_9299177_SNP [dm3] X_9405144_SNP [dm6]	G	T	2.325e^-4	0.991	INTRON mgl
3R	14145818	3R_14145818_SNP [dm3] 3R_18320096_SNP [dm6]	A	C	2.329e^-4	0.991	INTRON CG31235
2R	16622415	2R_16622415_SNP [dm3] 2R_20734910_SNP [dm6]	G	A	2.338e^-4	0.991	INTRON dpr
3L	13074189	3L_13074189_SNP [dm3] 3L_13081089_SNP [dm6]	A	C	2.338e^-4	0.991	DOWNSTREAM CR43652 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5971713	X_5971713_SNP [dm3] X_6077680_SNP [dm6]	T	G	2.345e^-4	0.991	UTR_5_PRIME CG4666 UPSTREAM CG4666
2L	526756	2L_526756_SNP [dm3] 2L_526756_SNP [dm6]	T	A	2.352e^-4	0.991	INTRON ush	regulatory region REDfly_CRMs
3R	25407111	3R_25407111_SNP [dm3] 3R_29581389_SNP [dm6]	G	A	2.356e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23564301	3R_23564301_SNP [dm3] 3R_27738579_SNP [dm6]	C	T	2.361e^-4	0.991	INTRON Ets98B
2R	18463824	2R_18463824_SNP [dm3] 2R_22576319_SNP [dm6]	C	A	2.374e^-4	0.991	INTRON dnr1
2L	2366662	2L_2366662_SNP [dm3] 2L_2366662_SNP [dm6]	C	G	2.377e^-4	0.991	SYNONYMOUS_CODING Axud1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	5784919	2R_5784919_SNP [dm3] 2R_9897414_SNP [dm6]	A	C	2.387e^-4	0.991	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10703341	2L_10703341_SNP [dm3] 2L_10703341_SNP [dm6]	C	G	2.391e^-4	0.991	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22916337	3R_22916337_SNP [dm3] 3R_27090615_SNP [dm6]	T	G	2.392e^-4	0.991	INTRON Cpr97Eb
3R	21214520	3R_21214520_SNP [dm3] 3R_25388798_SNP [dm6]	T	C	2.399e^-4	0.991	INTRON Fur1	TF binding site BDTNP1_TFBS_dl
3R	15048276	3R_15048276_SNP [dm3] 3R_19222554_SNP [dm6]	A	G	2.405e^-4	0.991	INTRON vib
3L	11026449	3L_11026449_SNP [dm3] 3L_11033349_SNP [dm6]	A	G	2.407e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17697078	2R_17697078_SNP [dm3] 2R_21809573_SNP [dm6]	C	T	2.409e^-4	0.991	INTERGENIC
3R	23566434	3R_23566434_SNP [dm3] 3R_27740712_SNP [dm6]	C	G	2.417e^-4	0.991	INTRON Ets98B
3L	18438190	3L_18438190_INS [dm3] 3L_18445090_INS [dm6]	C	CG	2.426e^-4	0.991	INTERGENIC
3L	11018664	3L_11018664_SNP [dm3] 3L_11025564_SNP [dm6]	C	G	2.430e^-4	0.991	NON_SYNONYMOUS_CODING CG32079 DOWNSTREAM Fad2
3R	9944937	3R_9944937_SNP [dm3] 3R_14119215_SNP [dm6]	C	A	2.435e^-4	0.991	UPSTREAM Kif19A DOWNSTREAM Abi INTERGENIC
3L	18577702	3L_18577702_SNP [dm3] 3L_18584602_SNP [dm6]	G	A	2.436e^-4	0.991	DOWNSTREAM CR45435 INTERGENIC
X	10466882	X_10466882_SNP [dm3] X_10572849_SNP [dm6]	T	A	2.437e^-4	0.991	INTRON spri
3L	11017013	3L_11017013_SNP [dm3] 3L_11023913_SNP [dm6]	C	A	2.453e^-4	0.991	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21228403	3R_21228403_SNP [dm3] 3R_25402681_SNP [dm6]	A	G	2.455e^-4	0.991	INTRON Fur1
3L	18782525	3L_18782525_SNP [dm3] 3L_18789425_SNP [dm6]	C	A	2.461e^-4	0.991	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
2L	1978644	2L_1978644_SNP [dm3] 2L_1978644_SNP [dm6]	A	G	2.468e^-4	0.991	SYNONYMOUS_CODING CG15356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	1884298	3R_1884298_SNP [dm3] 3R_6058576_SNP [dm6]	A	C	2.472e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_inv
3R	21856291	3R_21856291_SNP [dm3] 3R_26030569_SNP [dm6]	T	C	2.480e^-4	0.991	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	9197283	3R_9197283_SNP [dm3] 3R_13371561_SNP [dm6]	A	G	2.482e^-4	0.991	INTRON Lip3
X	9447307	X_9447307_SNP [dm3] X_9553274_SNP [dm6]	A	G	2.483e^-4	0.991	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	9197382	3R_9197382_SNP [dm3] 3R_13371660_SNP [dm6]	T	C	2.486e^-4	0.991	UPSTREAM CG34309 INTRON Lip3
X	2398888	X_2398888_SNP [dm3] X_2504855_SNP [dm6]	C	T	2.491e^-4	0.991	INTRON trol	TF binding site mE1_TFBS_cad
3R	8282771	3R_8282771_SNP [dm3] 3R_12457049_SNP [dm6]	A	T	2.499e^-4	0.991	NON_SYNONYMOUS_CODING trus DOWNSTREAM CG18549	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	10244804	2L_10244804_SNP [dm3] 2L_10244804_SNP [dm6]	T	A	2.500e^-4	0.991	SYNONYMOUS_CODING chico INTRON CR44995
3L	16984211	3L_16984211_SNP [dm3] 3L_16991111_SNP [dm6]	A	C	2.502e^-4	0.991	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_chinmo
3L	10530206	3L_10530206_SNP [dm3] 3L_10537106_SNP [dm6]	C	G	2.510e^-4	0.991	INTRON A2bp1
X	9798456	X_9798456_SNP [dm3] X_9904423_SNP [dm6]	A	T	2.515e^-4	0.991	INTERGENIC
X	4947643	X_4947643_SNP [dm3] X_5053610_SNP [dm6]	T	A	2.517e^-4	0.991	INTRON CR44833 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9170902	2R_9170902_SNP [dm3] 2R_13283397_SNP [dm6]	G	C	2.519e^-4	0.991	INTRON Dh31-R
X	13839078	X_13839078_DEL [dm3] X_13945045_DEL [dm6]	TTAAAT	T	2.529e^-4	0.991	INTRON mamo
2R	19368319	2R_19368319_SNP [dm3] 2R_23480796_SNP [dm6]	C	A	2.541e^-4	0.991	INTRON CG43795
2R	16099535	2R_16099535_SNP [dm3] 2R_20212030_SNP [dm6]	T	C	2.552e^-4	0.991	NON_SYNONYMOUS_CODING CG16894
2R	17017819	2R_17017819_SNP [dm3] 2R_21130314_SNP [dm6]	T	A	2.557e^-4	0.991	DOWNSTREAM mago INTRON Magi	TF binding site mE1_TFBS_sens
2R	16858440	2R_16858440_SNP [dm3] 2R_20970935_SNP [dm6]	C	G	2.564e^-4	0.991	INTERGENIC
X	13227027	X_13227027_SNP [dm3] X_13332994_SNP [dm6]	G	C	2.572e^-4	0.991	DOWNSTREAM Jafrac1 INTERGENIC
2R	10855846	2R_10855846_SNP [dm3] 2R_14968341_SNP [dm6]	G	A	2.573e^-4	0.991	INTRON ckn
2R	11913808	2R_11913808_SNP [dm3] 2R_16026303_SNP [dm6]	C	T	2.595e^-4	0.991	INTRON casp
3L	22649159	3L_22649159_SNP [dm3] 3L_22656059_SNP [dm6]	T	C	2.598e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1055671	3L_1055671_SNP [dm3] 3L_1055671_SNP [dm6]	A	G	2.606e^-4	0.991	INTRON bab1
3R	21345457	3R_21345457_SNP [dm3] 3R_25519735_SNP [dm6]	T	G	2.607e^-4	0.991	SPLICE_SITE_REGION msi INTRON msi
3R	14041134	3R_14041134_SNP [dm3] 3R_18215412_SNP [dm6]	T	C	2.621e^-4	0.991	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
3L	10709640	3L_10709640_SNP [dm3] 3L_10716540_SNP [dm6]	A	T	2.621e^-4	0.991	INTERGENIC
2L	17567159	2L_17567159_SNP [dm3] 2L_17567159_SNP [dm6]	G	A	2.629e^-4	0.991	DOWNSTREAM mir-124 INTERGENIC
2R	5789262	2R_5789262_SNP [dm3] 2R_9901757_SNP [dm6]	G	A	2.632e^-4	0.991	INTRON CG1441	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15438952	X_15438952_SNP [dm3] X_15544919_SNP [dm6]	C	G	2.634e^-4	0.991	INTRON Ac13E
3R	21321155	3R_21321155_SNP [dm3] 3R_25495433_SNP [dm6]	A	T	2.635e^-4	0.991	UPSTREAM CG33494 DOWNSTREAM CR44948 INTERGENIC	transposable element FlyBase
2L	2397343	2L_2397343_SNP [dm3] 2L_2397343_SNP [dm6]	G	A	2.636e^-4	0.991	INTRON VGlut
X	19318178	X_19318178_SNP [dm3] X_19424145_SNP [dm6]	T	G	2.639e^-4	0.991	INTRON kek5
X	5971733	X_5971733_SNP [dm3] X_6077700_SNP [dm6]	C	A	2.640e^-4	0.991	UTR_5_PRIME CG4666 UPSTREAM CG4666
3R	9983931	3R_9983931_SNP [dm3] 3R_14158209_SNP [dm6]	G	T	2.658e^-4	0.991	SYNONYMOUS_CODING CG31327 UPSTREAM CG31533	TF binding site mE1_TFBS_chinmo
3L	2500006	3L_2500006_SNP [dm3] 3L_2500006_SNP [dm6]	T	A	2.658e^-4	0.991	SYNONYMOUS_CODING CG16758 DOWNSTREAM CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11298327	3R_11298327_INS [dm3] 3R_15472605_INS [dm6]	C	CGGTC	2.659e^-4	0.991	INTRON AdamTS-A	TF binding site mE1_TFBS_zfh1
3R	21228369	3R_21228369_SNP [dm3] 3R_25402647_SNP [dm6]	A	T	2.660e^-4	0.991	INTRON Fur1
2R	6310804	2R_6310804_SNP [dm3] 2R_10423299_SNP [dm6]	T	A	2.666e^-4	0.991	DOWNSTREAM CG33474 INTRON CG11825	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	7680583	2L_7680583_SNP [dm3] 2L_7680583_SNP [dm6]	A	C	2.667e^-4	0.991	INTRON Myo28B1
3L	18986444	3L_18986444_SNP [dm3] 3L_18993344_SNP [dm6]	T	A	2.667e^-4	0.991	UPSTREAM CG18135 INTRON CG18135	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	4315262	3L_4315262_SNP [dm3] 3L_4315262_SNP [dm6]	T	C	2.667e^-4	0.991	SYNONYMOUS_CODING Claspin
2L	2557232	2L_2557232_SNP [dm3] 2L_2557232_SNP [dm6]	T	C	2.670e^-4	0.991	INTERGENIC
2R	17376636	2R_17376636_SNP [dm3] 2R_21489131_SNP [dm6]	T	C	2.672e^-4	0.991	INTRON Fkbp14
2R	16122560	2R_16122560_SNP [dm3] 2R_20235055_SNP [dm6]	C	A	2.682e^-4	0.991	UTR_5_PRIME CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
2L	18243973	2L_18243973_SNP [dm3] 2L_18243973_SNP [dm6]	G	T	2.682e^-4	0.991	INTRON CG42750	TF binding site mE1_TFBS_sbb
2R	6310806	2R_6310806_SNP [dm3] 2R_10423301_SNP [dm6]	C	T	2.685e^-4	0.991	DOWNSTREAM CG33474 INTRON CG11825	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	13839054	X_13839054_SNP [dm3] X_13945021_SNP [dm6]	C	A	2.686e^-4	0.991	INTRON mamo
2R	12175463	2R_12175463_SNP [dm3] 2R_16287958_SNP [dm6]	G	C	2.697e^-4	0.991	SYNONYMOUS_CODING CG30324 DOWNSTREAM CG30099 & 2 others	TF binding site mE1_TFBS_cad
2R	3356046	2R_3356046_SNP [dm3] 2R_7468541_SNP [dm6]	T	A	2.702e^-4	0.991	SPLICE_SITE_REGION Aldh-III INTRON Aldh-III
X	15438939	X_15438939_SNP [dm3] X_15544906_SNP [dm6]	T	C	2.705e^-4	0.991	INTRON Ac13E
3L	17675814	3L_17675814_SNP [dm3] 3L_17682714_SNP [dm6]	T	C	2.707e^-4	0.991	INTRON CG34251
3R	6258286	3R_6258286_SNP [dm3] 3R_10432564_SNP [dm6]	T	G	2.707e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18427645	2R_18427645_SNP [dm3] 2R_22540140_SNP [dm6]	A	T	2.709e^-4	0.991	INTRON px
2L	5540289	2L_5540289_SNP [dm3] 2L_5540289_SNP [dm6]	G	C	2.714e^-4	0.991	SYNONYMOUS_CODING Hel25E UTR_3_PRIME Hel25E	TF binding site mE1_TFBS_sens
2R	10637595	2R_10637595_SNP [dm3] 2R_14750090_SNP [dm6]	T	A	2.721e^-4	0.991	UTR_3_PRIME AttB DOWNSTREAM Rpn6 & 1 other
2L	2779619	2L_2779619_INS [dm3] 2L_2779619_INS [dm6]	A	ATCATGTATATATGCC...	2.724e^-4	0.991	UTR_3_PRIME Syt1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13424423	3R_13424423_SNP [dm3] 3R_17598701_SNP [dm6]	A	T	2.730e^-4	0.991	INTERGENIC
3L	16772521	3L_16772521_SNP [dm3] 3L_16779421_SNP [dm6]	C	T	2.737e^-4	0.991	NON_SYNONYMOUS_CODING CG13025 UPSTREAM CG9705	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18438200	3L_18438200_SNP [dm3] 3L_18445100_SNP [dm6]	T	C	2.745e^-4	0.991	INTERGENIC
2L	526805	2L_526805_SNP [dm3] 2L_526805_SNP [dm6]	A	G	2.745e^-4	0.991	INTRON ush	regulatory region REDfly_CRMs
X	8347950	X_8347950_SNP [dm3] X_8453917_SNP [dm6]	G	A	2.748e^-4	0.991	INTRON org-1
3L	10709682	3L_10709682_SNP [dm3] 3L_10716582_SNP [dm6]	T	A	2.766e^-4	0.991	INTERGENIC
2R	5714099	2R_5714099_SNP [dm3] 2R_9826594_SNP [dm6]	A	C	2.769e^-4	0.991	NON_SYNONYMOUS_CODING dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11017800	3L_11017800_SNP [dm3] 3L_11024700_SNP [dm6]	G	A	2.771e^-4	0.991	UTR_3_PRIME Fad2 UPSTREAM CG32079	TF binding site BDTNP1_TFBS_twi
2R	17994775	2R_17994775_SNP [dm3] 2R_22107270_SNP [dm6]	A	G	2.771e^-4	0.991	DOWNSTREAM Vrp1 INTRON Vrp1
2R	20345653	2R_20345653_SNP [dm3] 2R_24458130_SNP [dm6]	A	C	2.775e^-4	0.991	INTRON CG13579
3L	8838741	3L_8838741_SNP [dm3] 3L_8845641_SNP [dm6]	G	T	2.775e^-4	0.991	INTRON dally
3L	4979552	3L_4979552_SNP [dm3] 3L_4979552_SNP [dm6]	C	T	2.780e^-4	0.991	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2994818	2L_2994818_SNP [dm3] 2L_2994818_SNP [dm6]	C	T	2.781e^-4	0.991	SYNONYMOUS_CODING CG3558
3L	6493828	3L_6493828_DEL [dm3] 3L_6500728_DEL [dm6]	GCCGTGCAACACCGCATG...	G	2.781e^-4	0.991	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14587677	3R_14587677_SNP [dm3] 3R_18761955_SNP [dm6]	C	T	2.803e^-4	0.991	SYNONYMOUS_CODING CG7720
3R	12939534	3R_12939534_SNP [dm3] 3R_17113812_SNP [dm6]	G	A	2.804e^-4	0.991	INTRON cher
X	5367575	X_5367575_SNP [dm3] X_5473542_SNP [dm6]	A	T	2.822e^-4	0.991	INTRON SPR
2L	17779981	2L_17779981_SNP [dm3] 2L_17779981_SNP [dm6]	A	C	2.830e^-4	0.991	INTERGENIC
2L	21903452	2L_21903452_SNP [dm3] 2L_21903452_SNP [dm6]	C	G	2.834e^-4	0.991	SYNONYMOUS_CODING CG1421
2L	2782753	2L_2782753_SNP [dm3] 2L_2782753_SNP [dm6]	G	A	2.843e^-4	0.991	UTR_3_PRIME Syt1
3R	1884297	3R_1884297_SNP [dm3] 3R_6058575_SNP [dm6]	C	G	2.879e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_inv
3R	12442691	3R_12442691_SNP [dm3] 3R_16616969_SNP [dm6]	G	A	2.889e^-4	0.991	UPSTREAM CG17560 INTRON CG17562
X	21353622	X_21353622_SNP [dm3] X_21482595_SNP [dm6]	C	T	2.895e^-4	0.991	DOWNSTREAM CR45511 INTERGENIC
3L	13243483	3L_13243483_SNP [dm3] 3L_13250383_SNP [dm6]	T	A	2.898e^-4	0.991	DOWNSTREAM tRNA:D2:69F INTRON caps
2L	18237722	2L_18237722_SNP [dm3] 2L_18237722_SNP [dm6]	T	A	2.899e^-4	0.991	INTRON CG42750
2R	5284935	2R_5284935_SNP [dm3] 2R_9397430_SNP [dm6]	T	G	2.901e^-4	0.991	SYNONYMOUS_CODING CG8801	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12661063	2L_12661063_SNP [dm3] 2L_12661063_SNP [dm6]	G	T	2.910e^-4	0.991	INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	13839087	X_13839087_INS [dm3] X_13945054_INS [dm6]	T	TTTAT	2.915e^-4	0.991	INTRON mamo
3R	13798750	3R_13798750_SNP [dm3] 3R_17973028_SNP [dm6]	G	C	2.917e^-4	0.991	INTRON cpo
3R	23561801	3R_23561801_SNP [dm3] 3R_27736079_SNP [dm6]	G	C	2.918e^-4	0.991	UPSTREAM Ets98B INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11024620	3L_11024620_INS [dm3] 3L_11031520_INS [dm6]	A	ACATGCAAAAATCT...	2.924e^-4	0.991	INTERGENIC
3R	23168470	3R_23168470_SNP [dm3] 3R_27342748_SNP [dm6]	A	G	2.933e^-4	0.991	INTRON CG42534
2L	8354915	2L_8354915_SNP [dm3] 2L_8354915_SNP [dm6]	T	A	2.939e^-4	0.991	NON_SYNONYMOUS_CODING Mur29B DOWNSTREAM CG7627
3L	17055054	3L_17055054_SNP [dm3] 3L_17061954_SNP [dm6]	C	T	2.943e^-4	0.991	UTR_3_PRIME Rbp6
3L	11018550	3L_11018550_INS [dm3] 3L_11025450_INS [dm6]	G	GCT	2.949e^-4	0.991	UPSTREAM CG32079 DOWNSTREAM Fad2 INTERGENIC
3R	23559325	3R_23559325_SNP [dm3] 3R_27733603_SNP [dm6]	T	A	2.952e^-4	0.991	INTERGENIC
X	20893462	X_20893462_SNP [dm3] X_21022435_SNP [dm6]	G	C	2.959e^-4	0.991	DOWNSTREAM r-cup INTERGENIC
X	15679626	X_15679626_SNP [dm3] X_15785593_SNP [dm6]	T	C	2.966e^-4	0.991	UPSTREAM mRpS30 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12090404	3R_12090404_SNP [dm3] 3R_16264682_SNP [dm6]	G	A	2.967e^-4	0.991	SYNONYMOUS_CODING asun UPSTREAM bor	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8378830	2L_8378830_SNP [dm3] 2L_8378830_SNP [dm6]	A	G	2.967e^-4	0.991	SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG17294	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6775014	2L_6775014_SNP [dm3] 2L_6775014_SNP [dm6]	T	C	2.973e^-4	0.991	UPSTREAM CG17378 INTRON CG17378
2R	15271284	2R_15271284_SNP [dm3] 2R_19383779_SNP [dm6]	T	C	2.973e^-4	0.991	SYNONYMOUS_CODING CG10073
3L	4134805	3L_4134805_SNP [dm3] 3L_4134805_SNP [dm6]	A	T	2.974e^-4	0.991	UPSTREAM ens DOWNSTREAM RfC4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	14573563	3L_14573563_SNP [dm3] 3L_14580463_SNP [dm6]	C	T	2.985e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20446117	3R_20446117_SNP [dm3] 3R_24620395_SNP [dm6]	C	T	3.007e^-4	0.991	SYNONYMOUS_CODING mld	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7228605	X_7228605_SNP [dm3] X_7334572_SNP [dm6]	A	T	3.011e^-4	0.991	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	526758	2L_526758_SNP [dm3] 2L_526758_SNP [dm6]	C	T	3.014e^-4	0.991	INTRON ush	regulatory region REDfly_CRMs
3R	12090048	3R_12090048_SNP [dm3] 3R_16264326_SNP [dm6]	G	A	3.018e^-4	0.991	UTR_5_PRIME asun UPSTREAM bor	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	12090164	3R_12090164_SNP [dm3] 3R_16264442_SNP [dm6]	C	T	3.018e^-4	0.991	SYNONYMOUS_CODING asun UPSTREAM bor	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	11015320	3L_11015320_INS [dm3] 3L_11022220_INS [dm6]	T	TT	3.021e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9224554	3L_9224554_SNP [dm3] 3L_9231454_SNP [dm6]	G	T	3.033e^-4	0.991	INTERGENIC
3R	12218127	3R_12218127_INS [dm3] 3R_16392405_INS [dm6]	A	AA	3.037e^-4	0.991	INTRON ss	regulatory region REDfly_CRMs
3R	24849141	3R_24849141_SNP [dm3] 3R_29023419_SNP [dm6]	C	T	3.040e^-4	0.991	EXON CR45567	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11016441	3L_11016441_SNP [dm3] 3L_11023341_SNP [dm6]	G	A	3.046e^-4	0.991	UPSTREAM Fad2 INTERGENIC	regulatory region REDfly_CRMs
3L	4781393	3L_4781393_SNP [dm3] 3L_4781393_SNP [dm6]	C	G	3.063e^-4	0.991	INTRON RhoGEF64C
2R	5777768	2R_5777768_DEL [dm3] 2R_9890263_DEL [dm6]	AGACCTTTAA	A	3.065e^-4	0.991	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
2L	6989744	2L_6989744_SNP [dm3] 2L_6989744_SNP [dm6]	C	T	3.067e^-4	0.991	INTRON uif
3L	18785441	3L_18785441_SNP [dm3] 3L_18792341_SNP [dm6]	T	A	3.070e^-4	0.991	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3L	11007099	3L_11007099_SNP [dm3] 3L_11013999_SNP [dm6]	A	T	3.078e^-4	0.991	INTERGENIC
2L	11872189	2L_11872189_SNP [dm3] 2L_11872189_SNP [dm6]	G	A	3.084e^-4	0.991	INTRON Pde1c
2L	12483626	2L_12483626_SNP [dm3] 2L_12483626_SNP [dm6]	A	C	3.086e^-4	0.991	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	2621494	3R_2621494_SNP [dm3] 3R_6795772_SNP [dm6]	A	G	3.096e^-4	0.991	INTRON Dfd
3L	1884655	3L_1884655_SNP [dm3] 3L_1884655_SNP [dm6]	G	A	3.102e^-4	0.991	INTRON Aprt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1055666	3L_1055666_SNP [dm3] 3L_1055666_SNP [dm6]	A	G	3.105e^-4	0.991	INTRON bab1
2L	14593964	2L_14593964_SNP [dm3] 2L_14593964_SNP [dm6]	A	T	3.107e^-4	0.991	INTERGENIC
2L	8443000	2L_8443000_SNP [dm3] 2L_8443000_SNP [dm6]	A	C	3.113e^-4	0.991	SYNONYMOUS_CODING CG31897 DOWNSTREAM mus201
2L	11872218	2L_11872218_DEL [dm3] 2L_11872218_DEL [dm6]	TTTATAGAACTT...	T	3.123e^-4	0.991	INTRON Pde1c
3R	25239878	3R_25239878_SNP [dm3] 3R_29414156_SNP [dm6]	C	G	3.129e^-4	0.991	INTRON Ptp99A
3L	5984725	3L_5984725_SNP [dm3] 3L_5991625_SNP [dm6]	G	A	3.130e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21214461	3R_21214461_SNP [dm3] 3R_25388739_SNP [dm6]	T	A	3.133e^-4	0.991	INTRON Fur1
2L	8639673	2L_8639673_SNP [dm3] 2L_8639673_SNP [dm6]	C	A	3.135e^-4	0.991	INTRON Sema-1a
3L	17143733	3L_17143733_SNP [dm3] 3L_17150633_SNP [dm6]	A	C	3.136e^-4	0.991	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23561448	3R_23561448_SNP [dm3] 3R_27735726_SNP [dm6]	C	T	3.136e^-4	0.991	UPSTREAM Ets98B INTERGENIC
2R	7953366	2R_7953366_SNP [dm3] 2R_12065861_SNP [dm6]	A	G	3.170e^-4	0.991	SYNONYMOUS_CODING CG8888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	14191569	2R_14191569_INS [dm3] 2R_18304064_INS [dm6]	A	AA	3.170e^-4	0.991	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14390339	2R_14390339_SNP [dm3] 2R_18502834_SNP [dm6]	A	G	3.173e^-4	0.991	UPSTREAM GstE11 INTERGENIC
X	13908921	X_13908921_SNP [dm3] X_14014888_SNP [dm6]	C	T	3.173e^-4	0.991	UPSTREAM tRNA:S4:12Ea & 1 other DOWNSTREAM tRNA:R:12Ee INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17399563	3R_17399563_SNP [dm3] 3R_21573841_SNP [dm6]	T	C	3.176e^-4	0.991	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad
3R	3577436	3R_3577436_SNP [dm3] 3R_7751714_SNP [dm6]	A	G	3.179e^-4	0.991	INTERGENIC
2L	2979431	2L_2979431_SNP [dm3] 2L_2979431_SNP [dm6]	A	C	3.180e^-4	0.991	UPSTREAM CG9643 DOWNSTREAM CG3165 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10059728	2L_10059728_SNP [dm3] 2L_10059728_SNP [dm6]	C	T	3.190e^-4	0.991	UTR_3_PRIME Pen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8531464	X_8531464_SNP [dm3] X_8637431_SNP [dm6]	T	G	3.200e^-4	0.991	INTRON oc	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens transposable element FlyBase
3L	19630581	3L_19630581_SNP [dm3] 3L_19637481_SNP [dm6]	A	G	3.212e^-4	0.991	UTR_3_PRIME CG8786 DOWNSTREAM CG8786	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	10709620	3L_10709620_DEL [dm3] 3L_10716520_DEL [dm6]	ACTTGC	A	3.220e^-4	0.991	INTERGENIC
3L	1652803	3L_1652803_SNP [dm3] 3L_1652803_SNP [dm6]	G	A	3.230e^-4	0.991	UTR_5_PRIME CG7967 UPSTREAM CG7970	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8378719	2L_8378719_SNP [dm3] 2L_8378719_SNP [dm6]	A	G	3.231e^-4	0.991	SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG17294	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12004994	3L_12004994_SNP [dm3] 3L_12011894_SNP [dm6]	G	A	3.233e^-4	0.991	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17401764	3R_17401764_SNP [dm3] 3R_21576042_SNP [dm6]	G	T	3.238e^-4	0.991	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad
3R	7286950	3R_7286950_SNP [dm3] 3R_11461228_SNP [dm6]	A	T	3.258e^-4	0.991	UPSTREAM PGRP-LB INTRON CG17230
X	19130105	X_19130105_SNP [dm3] X_19236072_SNP [dm6]	G	A	3.262e^-4	0.991	UTR_3_PRIME CG14196 DOWNSTREAM CG7884
3L	10709704	3L_10709704_SNP [dm3] 3L_10716604_SNP [dm6]	A	G	3.264e^-4	0.991	INTERGENIC
2L	11401332	2L_11401332_SNP [dm3] 2L_11401332_SNP [dm6]	C	T	3.268e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3171066	2R_3171066_SNP [dm3] 2R_7283561_SNP [dm6]	C	T	3.283e^-4	0.991	SPLICE_SITE_REGION pwn UTR_5_PRIME pwn INTRON pwn	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11007098	3L_11007098_SNP [dm3] 3L_11013998_SNP [dm6]	G	T	3.291e^-4	0.991	INTERGENIC
2L	7741659	2L_7741659_DEL [dm3] 2L_7741659_DEL [dm6]	CTGACACTGC	C	3.292e^-4	0.991	UPSTREAM Acp1 INTERGENIC
2L	18237863	2L_18237863_SNP [dm3] 2L_18237863_SNP [dm6]	A	T	3.295e^-4	0.991	INTRON CG42750
3R	17016417	3R_17016417_DEL [dm3] 3R_21190695_DEL [dm6]	TCAAT	T	3.310e^-4	0.991	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4028787	2L_4028787_SNP [dm3] 2L_4028787_SNP [dm6]	T	A	3.319e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	20819879	3R_20819879_SNP [dm3] 3R_24994157_SNP [dm6]	C	T	3.319e^-4	0.991	INTRON tnc
X	16070191	X_16070191_SNP [dm3] X_16176158_SNP [dm6]	C	T	3.323e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8315156	3L_8315156_SNP [dm3] 3L_8322056_SNP [dm6]	C	T	3.336e^-4	0.991	SYNONYMOUS_CODING CG13670
2R	10636722	2R_10636722_SNP [dm3] 2R_14749217_SNP [dm6]	T	C	3.358e^-4	0.991	UPSTREAM AttB DOWNSTREAM Rpn6 INTERGENIC
2L	7741578	2L_7741578_INS [dm3] 2L_7741578_INS [dm6]	G	GG	3.370e^-4	0.991	UPSTREAM Acp1 INTERGENIC
3L	18057562	3L_18057562_SNP [dm3] 3L_18064462_SNP [dm6]	A	C	3.374e^-4	0.991	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6630406	2R_6630406_SNP [dm3] 2R_10742901_SNP [dm6]	G	A	3.375e^-4	0.991	INTRON CG33144
2L	10627138	2L_10627138_SNP [dm3] 2L_10627138_SNP [dm6]	T	C	3.377e^-4	0.991	UTR_3_PRIME Trim9
3L	2091557	3L_2091557_SNP [dm3] 3L_2091557_SNP [dm6]	T	G	3.381e^-4	0.991	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8442879	2L_8442879_SNP [dm3] 2L_8442879_SNP [dm6]	G	T	3.388e^-4	0.991	NON_SYNONYMOUS_CODING CG31897 DOWNSTREAM mus201
3R	6812043	3R_6812043_SNP [dm3] 3R_10986321_SNP [dm6]	C	T	3.396e^-4	0.991	INTRON CG34114
2L	2928864	2L_2928864_SNP [dm3] 2L_2928864_SNP [dm6]	T	G	3.407e^-4	0.991	INTRON lilli
3R	13160092	3R_13160092_SNP [dm3] 3R_17334370_SNP [dm6]	T	A	3.422e^-4	0.991	INTRON beat-IIa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19607373	2L_19607373_SNP [dm3] 2L_19607373_SNP [dm6]	G	C	3.423e^-4	0.991	INTRON Lar	TF binding site BDTNP1_TFBS_da
3L	19212596	3L_19212596_SNP [dm3] 3L_19219496_SNP [dm6]	C	T	3.440e^-4	0.991	INTRON fz2
2R	11897036	2R_11897036_SNP [dm3] 2R_16009531_SNP [dm6]	T	G	3.445e^-4	0.991	SYNONYMOUS_CODING CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	8781151	X_8781151_SNP [dm3] X_8887118_SNP [dm6]	C	T	3.447e^-4	0.991	INTRON Moe	TF binding site BDTNP1_TFBS_dl
2R	18035712	2R_18035712_SNP [dm3] 2R_22148207_SNP [dm6]	T	G	3.453e^-4	0.991	INTRON a
X	19318248	X_19318248_SNP [dm3] X_19424215_SNP [dm6]	C	T	3.456e^-4	0.991	INTRON kek5
3L	10709661	3L_10709661_INS [dm3] 3L_10716561_INS [dm6]	T	TCG	3.463e^-4	0.991	INTERGENIC
3L	10709664	3L_10709664_MNP [dm3] 3L_10716564_MNP [dm6]	TTTG	CAAA	3.463e^-4	0.991	INTERGENIC
2L	5335436	2L_5335436_SNP [dm3] 2L_5335436_SNP [dm6]	C	A	3.492e^-4	0.991	INTRON fusl
3R	14354210	3R_14354210_SNP [dm3] 3R_18528488_SNP [dm6]	A	G	3.497e^-4	0.991	INTRON fru
3L	13088180	3L_13088180_INS [dm3] 3L_13095080_INS [dm6]	A	AT	3.497e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	5359219	X_5359219_SNP [dm3] X_5465186_SNP [dm6]	C	A	3.508e^-4	0.991	INTRON SPR
3L	11626675	3L_11626675_SNP [dm3] 3L_11633575_SNP [dm6]	G	C	3.509e^-4	0.991	UPSTREAM CR45158 INTRON CG32091
3R	14031943	3R_14031943_SNP [dm3] 3R_18206221_SNP [dm6]	C	T	3.511e^-4	0.991	INTRON CG7985
2L	1977816	2L_1977816_SNP [dm3] 2L_1977816_SNP [dm6]	T	C	3.516e^-4	0.991	NON_SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14709966	2L_14709966_SNP [dm3] 2L_14709966_SNP [dm6]	G	T	3.517e^-4	0.991	INTERGENIC
3L	10233932	3L_10233932_SNP [dm3] 3L_10240832_SNP [dm6]	C	G	3.533e^-4	0.991	DOWNSTREAM CR45403 INTERGENIC
2L	18808656	2L_18808656_SNP [dm3] 2L_18808656_SNP [dm6]	A	T	3.535e^-4	0.991	DOWNSTREAM CG42502 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	23168252	3R_23168252_SNP [dm3] 3R_27342530_SNP [dm6]	C	T	3.548e^-4	0.991	INTRON CG42534
3L	1258014	3L_1258014_SNP [dm3] 3L_1258014_SNP [dm6]	A	G	3.579e^-4	0.991	INTRON CG9134
2R	7126441	2R_7126441_SNP [dm3] 2R_11238936_SNP [dm6]	T	A	3.579e^-4	0.991	NON_SYNONYMOUS_CODING CG13216 DOWNSTREAM CG13215	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2R	17370907	2R_17370907_SNP [dm3] 2R_21483402_SNP [dm6]	A	G	3.582e^-4	0.991	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6278846	2R_6278846_SNP [dm3] 2R_10391341_SNP [dm6]	T	C	3.589e^-4	0.991	INTRON CG42732
2L	5956347	2L_5956347_SNP [dm3] 2L_5956347_SNP [dm6]	A	G	3.594e^-4	0.991	UTR_5_PRIME CG13999 UPSTREAM Vm26Ab DOWNSTREAM CG13998
X	9446981	X_9446981_SNP [dm3] X_9552948_SNP [dm6]	T	G	3.594e^-4	0.991	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	2363072	3L_2363072_SNP [dm3] 3L_2363072_SNP [dm6]	T	C	3.595e^-4	0.991	DOWNSTREAM CG13801 INTERGENIC
3L	6987630	3L_6987630_SNP [dm3] 3L_6994530_SNP [dm6]	G	A	3.595e^-4	0.991	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	4782055	X_4782055_SNP [dm3] X_4888022_SNP [dm6]	A	G	3.596e^-4	0.991	INTRON CG42594	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14595511	2L_14595511_SNP [dm3] 2L_14595511_SNP [dm6]	A	G	3.599e^-4	0.991	INTERGENIC
2L	9724116	2L_9724116_SNP [dm3] 2L_9724116_SNP [dm6]	A	G	3.606e^-4	0.991	INTRON Nckx30C
3L	12992962	3L_12992962_SNP [dm3] 3L_12999862_SNP [dm6]	G	A	3.616e^-4	0.991	INTERGENIC
3R	24607874	3R_24607874_SNP [dm3] 3R_28782152_SNP [dm6]	A	G	3.630e^-4	0.991	INTERGENIC
2R	19605629	2R_19605629_SNP [dm3] 2R_23718106_SNP [dm6]	C	T	3.646e^-4	0.991	DOWNSTREAM CG18128 INTRON Sesn	TF binding site mE1_TFBS_chinmo
3R	19145491	3R_19145491_SNP [dm3] 3R_23319769_SNP [dm6]	T	C	3.649e^-4	0.991	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	14476455	3L_14476455_SNP [dm3] 3L_14483355_SNP [dm6]	T	C	3.650e^-4	0.991	INTRON bbg
2R	16011467	2R_16011467_SNP [dm3] 2R_20123962_SNP [dm6]	C	A	3.655e^-4	0.991	INTERGENIC
2R	18035717	2R_18035717_SNP [dm3] 2R_22148212_SNP [dm6]	A	T	3.674e^-4	0.991	INTRON a
2L	583257	2L_583257_SNP [dm3] 2L_583257_SNP [dm6]	T	A	3.674e^-4	0.991	DOWNSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8440785	2L_8440785_SNP [dm3] 2L_8440785_SNP [dm6]	A	C	3.676e^-4	0.991	SYNONYMOUS_CODING mus201
2L	8347991	2L_8347991_SNP [dm3] 2L_8347991_SNP [dm6]	T	C	3.677e^-4	0.991	INTRON CG7778
3L	1627733	3L_1627733_SNP [dm3] 3L_1627733_SNP [dm6]	G	A	3.685e^-4	0.991	SYNONYMOUS_CODING CG13928 INTRON GC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18982407	3R_18982407_SNP [dm3] 3R_23156685_SNP [dm6]	A	T	3.693e^-4	0.991	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	6308184	2R_6308184_SNP [dm3] 2R_10420679_SNP [dm6]	C	T	3.694e^-4	0.991	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
X	21351577	X_21351577_SNP [dm3] X_21480550_SNP [dm6]	A	T	3.695e^-4	0.991	UPSTREAM CR45509 DOWNSTREAM CR45510 INTERGENIC	TF binding site mE1_TFBS_HSA
X	21353170	X_21353170_SNP [dm3] X_21482143_SNP [dm6]	T	A	3.695e^-4	0.991	DOWNSTREAM CR45511 INTERGENIC
X	10970794	X_10970794_SNP [dm3] X_11076761_SNP [dm6]	T	C	3.696e^-4	0.991	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	27273730	3R_27273730_SNP [dm3] 3R_31448008_SNP [dm6]	C	T	3.699e^-4	0.991	INTRON Gprk2
3R	14041176	3R_14041176_SNP [dm3] 3R_18215454_SNP [dm6]	T	A	3.700e^-4	0.991	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
2L	12815650	2L_12815650_DEL [dm3] 2L_12815650_DEL [dm6]	AG	A	3.702e^-4	0.991	INTERGENIC
2L	4673624	2L_4673624_SNP [dm3] 2L_4673624_SNP [dm6]	T	C	3.707e^-4	0.991	INTERGENIC
3L	10709766	3L_10709766_SNP [dm3] 3L_10716666_SNP [dm6]	A	G	3.725e^-4	0.991	INTERGENIC
2R	12544634	2R_12544634_SNP [dm3] 2R_16657129_SNP [dm6]	G	A	3.749e^-4	0.991	SYNONYMOUS_CODING Picot
2R	10637411	2R_10637411_SNP [dm3] 2R_14749906_SNP [dm6]	G	A	3.751e^-4	0.991	SYNONYMOUS_CODING AttB DOWNSTREAM Rpn6
3R	8435778	3R_8435778_SNP [dm3] 3R_12610056_SNP [dm6]	T	C	3.754e^-4	0.991	INTERGENIC
2R	14972746	2R_14972746_INS [dm3] 2R_19085241_INS [dm6]	T	TT	3.765e^-4	0.991	INTRON 5-HT1A
3R	25020395	3R_25020395_SNP [dm3] 3R_29194673_SNP [dm6]	A	G	3.784e^-4	0.991	INTRON CG14509
3L	5626901	3L_5626901_SNP [dm3] 3L_5633801_SNP [dm6]	A	T	3.785e^-4	0.991	INTRON Blimp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5626905	3L_5626905_SNP [dm3] 3L_5633805_SNP [dm6]	A	G	3.785e^-4	0.991	INTRON Blimp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	1961707	3R_1961707_SNP [dm3] 3R_6135985_SNP [dm6]	T	G	3.794e^-4	0.991	INTERGENIC
3L	4315259	3L_4315259_SNP [dm3] 3L_4315259_SNP [dm6]	G	C	3.794e^-4	0.991	SYNONYMOUS_CODING Claspin
2R	20060543	2R_20060543_SNP [dm3] 2R_24173020_SNP [dm6]	C	T	3.800e^-4	0.991	DOWNSTREAM mRpS17 INTRON CG3328	TF binding site mE1_TFBS_chinmo
3R	7469995	3R_7469995_SNP [dm3] 3R_11644273_SNP [dm6]	C	A	3.810e^-4	0.991	INTRON Csk
X	22358409	X_22358409_SNP [dm3] X_22956573_SNP [dm6]	A	G	3.815e^-4	0.991	INTERGENIC
X	22358413	X_22358413_INS [dm3] X_22956577_INS [dm6]	T	TTT	3.815e^-4	0.991	INTERGENIC
X	22358421	X_22358421_SNP [dm3] X_22956585_SNP [dm6]	C	T	3.815e^-4	0.991	INTERGENIC
X	9300194	X_9300194_SNP [dm3] X_9406161_SNP [dm6]	T	A	3.847e^-4	0.991	INTRON mgl
3R	24954216	3R_24954216_SNP [dm3] 3R_29128494_SNP [dm6]	T	C	3.848e^-4	0.991	DOWNSTREAM dgt6 & 1 other INTERGENIC
3R	18975014	3R_18975014_SNP [dm3] 3R_23149292_SNP [dm6]	T	C	3.850e^-4	0.991	DOWNSTREAM unk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19466167	3R_19466167_SNP [dm3] 3R_23640445_SNP [dm6]	G	T	3.854e^-4	0.991	INTRON CG31145
2R	7450299	2R_7450299_SNP [dm3] 2R_11562794_SNP [dm6]	C	T	3.857e^-4	0.991	INTERGENIC
2L	8359990	2L_8359990_SNP [dm3] 2L_8359990_SNP [dm6]	C	T	3.859e^-4	0.991	INTRON CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5732693	2R_5732693_SNP [dm3] 2R_9845188_SNP [dm6]	G	A	3.863e^-4	0.991	UTR_3_PRIME CG1667 DOWNSTREAM Orc6
2R	6640617	2R_6640617_DEL [dm3] 2R_10753112_DEL [dm6]	TCTTT	T	3.866e^-4	0.991	INTRON CG33144
2L	15883885	2L_15883885_SNP [dm3] 2L_15883885_SNP [dm6]	A	T	3.874e^-4	0.991	UPSTREAM CG44475 INTERGENIC
3R	7946925	3R_7946925_SNP [dm3] 3R_12121203_SNP [dm6]	A	G	3.878e^-4	0.991	DOWNSTREAM CG4702 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	14572725	3L_14572725_SNP [dm3] 3L_14579625_SNP [dm6]	G	A	3.879e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16804931	2R_16804931_SNP [dm3] 2R_20917426_SNP [dm6]	A	C	3.899e^-4	0.991	INTRON Rx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	9100745	X_9100745_SNP [dm3] X_9206712_SNP [dm6]	A	G	3.913e^-4	0.991	SYNONYMOUS_CODING CG12119
2R	18912518	2R_18912518_DEL [dm3] 2R_23024995_DEL [dm6]	AGCTTCA	A	3.924e^-4	0.991	INTRON twi & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16973255	2L_16973255_SNP [dm3] 2L_16973255_SNP [dm6]	T	C	3.925e^-4	0.991	UTR_5_PRIME beat-IIIb	TF binding site mE1_TFBS_Trl
2R	18639015	2R_18639015_SNP [dm3] 2R_22751510_SNP [dm6]	A	G	3.934e^-4	0.991	INTRON CG42260
X	7468888	X_7468888_SNP [dm3] X_7574855_SNP [dm6]	C	T	3.936e^-4	0.991	SYNONYMOUS_CODING CG11369	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	14046447	2L_14046447_SNP [dm3] 2L_14046447_SNP [dm6]	A	G	3.937e^-4	0.991	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	14770089	3L_14770089_SNP [dm3] 3L_14776989_SNP [dm6]	T	C	3.940e^-4	0.991	UPSTREAM mop INTRON bmm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17366269	2R_17366269_SNP [dm3] 2R_21478764_SNP [dm6]	A	T	3.942e^-4	0.991	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	24798363	3R_24798363_SNP [dm3] 3R_28972641_SNP [dm6]	G	C	3.943e^-4	0.991	EXON CR45669
X	22358418	X_22358418_SNP [dm3] X_22956582_SNP [dm6]	A	C	3.948e^-4	0.991	INTERGENIC
3R	26698938	3R_26698938_SNP [dm3] 3R_30873216_SNP [dm6]	C	G	3.953e^-4	0.991	UPSTREAM CG15545 INTERGENIC
2L	8635109	2L_8635109_SNP [dm3] 2L_8635109_SNP [dm6]	T	C	3.955e^-4	0.991	INTRON Sema-1a
2R	11436873	2R_11436873_SNP [dm3] 2R_15549368_SNP [dm6]	G	T	3.958e^-4	0.991	INTRON CG8192	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	8378646	2L_8378646_SNP [dm3] 2L_8378646_SNP [dm6]	G	A	3.963e^-4	0.991	SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG17294	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2386594	2L_2386594_SNP [dm3] 2L_2386594_SNP [dm6]	G	A	3.978e^-4	0.991	UPSTREAM CG3557 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14588346	3L_14588346_SNP [dm3] 3L_14595246_SNP [dm6]	G	A	3.991e^-4	0.991	INTRON HGTX	TF binding site mE1_TFBS_cnc
3L	12997457	3L_12997457_SNP [dm3] 3L_13004357_SNP [dm6]	A	T	3.997e^-4	0.991	INTERGENIC
2L	12342930	2L_12342930_SNP [dm3] 2L_12342930_SNP [dm6]	C	A	4.007e^-4	0.991	DOWNSTREAM CG43813 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2359689	2L_2359689_SNP [dm3] 2L_2359689_SNP [dm6]	A	G	4.018e^-4	0.991	UTR_3_PRIME Rab5 DOWNSTREAM eys
2L	18224139	2L_18224139_SNP [dm3] 2L_18224139_SNP [dm6]	A	T	4.024e^-4	0.991	INTRON CG42750
X	14569689	X_14569689_SNP [dm3] X_14675656_SNP [dm6]	T	A	4.026e^-4	0.991	INTERGENIC
X	9075056	X_9075056_SNP [dm3] X_9181023_SNP [dm6]	A	C	4.035e^-4	0.991	UTR_3_PRIME mei-P26
3R	19145413	3R_19145413_SNP [dm3] 3R_23319691_SNP [dm6]	T	C	4.038e^-4	0.991	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	18619333	2R_18619333_SNP [dm3] 2R_22731828_SNP [dm6]	A	G	4.049e^-4	0.991	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25020390	3R_25020390_SNP [dm3] 3R_29194668_SNP [dm6]	G	A	4.054e^-4	0.991	INTRON CG14509
3L	11926980	3L_11926980_SNP [dm3] 3L_11933880_SNP [dm6]	A	C	4.055e^-4	0.991	SYNONYMOUS_CODING byn INTRON CG44837
3R	13554164	3R_13554164_SNP [dm3] 3R_17728442_SNP [dm6]	C	T	4.067e^-4	0.991	SYNONYMOUS_CODING Lgr1
2L	12472890	2L_12472890_DEL [dm3] 2L_12472890_DEL [dm6]	CCCTATTC	C	4.072e^-4	0.991	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19707803	2R_19707803_DEL [dm3] 2R_23820280_DEL [dm6]	TTTTCACT	T	4.076e^-4	0.991	UPSTREAM CG5549 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8387466	2L_8387466_SNP [dm3] 2L_8387466_SNP [dm6]	A	G	4.088e^-4	0.991	INTRON CG13384	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16639723	2R_16639723_SNP [dm3] 2R_20752218_SNP [dm6]	T	G	4.095e^-4	0.991	UPSTREAM CG34202 DOWNSTREAM CG34201 INTERGENIC
2L	2099711	2L_2099711_SNP [dm3] 2L_2099711_SNP [dm6]	C	T	4.102e^-4	0.991	INTRON dpr3
2R	19591712	2R_19591712_SNP [dm3] 2R_23704189_SNP [dm6]	G	A	4.103e^-4	0.991	SYNONYMOUS_CODING l_2_dtl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20554424	3L_20554424_SNP [dm3] 3L_20561324_SNP [dm6]	A	C	4.112e^-4	0.991	INTERGENIC
3R	21209048	3R_21209048_SNP [dm3] 3R_25383326_SNP [dm6]	A	G	4.121e^-4	0.991	UPSTREAM CG31437 & 1 other INTRON Fur1
3L	14298395	3L_14298395_SNP [dm3] 3L_14305295_SNP [dm6]	C	T	4.125e^-4	0.991	INTRON fz
3L	10709706	3L_10709706_DEL [dm3] 3L_10716606_DEL [dm6]	AAAAC	TTTT	4.126e^-4	0.991	INTERGENIC
3L	22998679	3L_22998679_SNP [dm3] 3L_23005579_SNP [dm6]	G	C	4.126e^-4	0.991	INTRON nrm
X	9300060	X_9300060_SNP [dm3] X_9406027_SNP [dm6]	G	A	4.128e^-4	0.991	INTRON mgl
3R	10604335	3R_10604335_SNP [dm3] 3R_14778613_SNP [dm6]	G	A	4.134e^-4	0.991	INTRON jvl
3L	12069919	3L_12069919_SNP [dm3] 3L_12076819_SNP [dm6]	T	G	4.142e^-4	0.991	INTRON Sema-5c
3L	13017884	3L_13017884_SNP [dm3] 3L_13024784_SNP [dm6]	A	C	4.147e^-4	0.991	UTR_3_PRIME Zmynd10 DOWNSTREAM snoRNA:Me28S-A774a & 1 other	TF binding site mE1_TFBS_cad
3R	18739202	3R_18739202_SNP [dm3] 3R_22913480_SNP [dm6]	A	T	4.149e^-4	0.991	INTRON klg
2R	12765912	2R_12765912_SNP [dm3] 2R_16878407_SNP [dm6]	A	C	4.151e^-4	0.991	INTRON CG8910
2R	9508616	2R_9508616_SNP [dm3] 2R_13621111_SNP [dm6]	C	T	4.165e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	21431898	3R_21431898_DEL [dm3] 3R_25606176_DEL [dm6]	TCTTCTTACT	T	4.166e^-4	0.991	UTR_3_PRIME msi INTRON ymp
3R	23412147	3R_23412147_SNP [dm3] 3R_27586425_SNP [dm6]	T	G	4.168e^-4	0.991	DOWNSTREAM CG5639 & 1 other INTERGENIC
3R	18356053	3R_18356053_SNP [dm3] 3R_22530331_SNP [dm6]	G	A	4.173e^-4	0.991	DOWNSTREAM CG33093 INTRON CG33099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6531844	X_6531844_SNP [dm3] X_6637811_SNP [dm6]	C	A	4.176e^-4	0.991	DOWNSTREAM CR44817 INTRON pigs
3R	5503024	3R_5503024_SNP [dm3] 3R_9677302_SNP [dm6]	C	T	4.186e^-4	0.991	SYNONYMOUS_CODING CG8358 UPSTREAM CG16817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	5261452	3L_5261452_SNP [dm3] 3L_5268352_SNP [dm6]	A	C	4.193e^-4	0.991	INTRON shep
2R	14706733	2R_14706733_SNP [dm3] 2R_18819228_SNP [dm6]	C	T	4.194e^-4	0.991	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	17352084	2L_17352084_SNP [dm3] 2L_17352084_SNP [dm6]	A	T	4.197e^-4	0.991	INTERGENIC
X	14618651	X_14618651_DEL [dm3] X_14724618_DEL [dm6]	CA	C	4.202e^-4	0.991	INTRON NetB
2L	8360146	2L_8360146_SNP [dm3] 2L_8360146_SNP [dm6]	T	G	4.206e^-4	0.991	INTRON CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11007389	3L_11007389_DEL [dm3] 3L_11014289_DEL [dm6]	AT	A	4.234e^-4	0.991	INTERGENIC
2R	19712701	2R_19712701_SNP [dm3] 2R_23825178_SNP [dm6]	G	T	4.237e^-4	0.991	UPSTREAM CG4763 INTRON CG5549
3R	18964651	3R_18964651_SNP [dm3] 3R_23138929_SNP [dm6]	T	G	4.238e^-4	0.991	INTRON hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15048239	3R_15048239_SNP [dm3] 3R_19222517_SNP [dm6]	T	G	4.239e^-4	0.991	INTRON vib
2L	17567684	2L_17567684_SNP [dm3] 2L_17567684_SNP [dm6]	T	C	4.245e^-4	0.991	INTERGENIC
3R	23389460	3R_23389460_DEL [dm3] 3R_27563738_DEL [dm6]	CATGC	C	4.251e^-4	0.991	UTR_3_PRIME wdb
3L	12069887	3L_12069887_SNP [dm3] 3L_12076787_SNP [dm6]	A	T	4.259e^-4	0.991	INTRON Sema-5c
X	9075059	X_9075059_SNP [dm3] X_9181026_SNP [dm6]	C	G	4.272e^-4	0.991	UTR_3_PRIME mei-P26
3L	1043762	3L_1043762_SNP [dm3] 3L_1043762_SNP [dm6]	C	T	4.277e^-4	0.991	INTRON bab1
3R	21933301	3R_21933301_SNP [dm3] 3R_26107579_SNP [dm6]	G	C	4.277e^-4	0.991	SPLICE_SITE_REGION CG31324 INTRON CG31324
3R	12930793	3R_12930793_SNP [dm3] 3R_17105071_SNP [dm6]	C	T	4.290e^-4	0.991	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2360581	2L_2360581_SNP [dm3] 2L_2360581_SNP [dm6]	G	T	4.292e^-4	0.991	INTRON Rab5
3R	27365658	3R_27365658_DEL [dm3] 3R_31539936_DEL [dm6]	CGT	C	4.308e^-4	0.991	INTERGENIC
3R	13128595	3R_13128595_SNP [dm3] 3R_17302873_SNP [dm6]	T	A	4.310e^-4	0.991	INTERGENIC
3L	17731644	3L_17731644_SNP [dm3] 3L_17738544_SNP [dm6]	A	T	4.310e^-4	0.991	INTRON Ccn
3L	4746917	3L_4746917_SNP [dm3] 3L_4746917_SNP [dm6]	G	T	4.311e^-4	0.991	UPSTREAM CR43882 INTRON RhoGEF64C
X	7798513	X_7798513_SNP [dm3] X_7904480_SNP [dm6]	C	G	4.314e^-4	0.991	UTR_3_PRIME dpr14 DOWNSTREAM bys
X	21353182	X_21353182_INS [dm3] X_21482155_INS [dm6]	C	CTGCGTCTTTGTCTCTAGAA...	4.316e^-4	0.991	DOWNSTREAM CR45511 INTERGENIC
3R	12014856	3R_12014856_SNP [dm3] 3R_16189134_SNP [dm6]	T	A	4.317e^-4	0.991	INTRON sra
2R	19494065	2R_19494065_SNP [dm3] 2R_23606542_SNP [dm6]	G	A	4.318e^-4	0.991	SYNONYMOUS_CODING CG17662 INTRON CG17664	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11213423	2L_11213423_SNP [dm3] 2L_11213423_SNP [dm6]	C	T	4.318e^-4	0.991	INTRON ab
3L	14014191	3L_14014191_DEL [dm3] 3L_14021091_DEL [dm6]	GGCCAATGACATTG...	G	4.326e^-4	0.991	UTR_3_PRIME ptip DOWNSTREAM upSET
2L	18884810	2L_18884810_SNP [dm3] 2L_18884810_SNP [dm6]	G	A	4.330e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8359985	2L_8359985_INS [dm3] 2L_8359985_INS [dm6]	T	TA	4.341e^-4	0.991	INTRON CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13034085	3L_13034085_SNP [dm3] 3L_13040985_SNP [dm6]	C	T	4.343e^-4	0.991	UPSTREAM RpS4 DOWNSTREAM SRm160 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21860063	3R_21860063_SNP [dm3] 3R_26034341_SNP [dm6]	C	A	4.343e^-4	0.991	DOWNSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	1850992	3R_1850992_SNP [dm3] 3R_6025270_SNP [dm6]	C	T	4.350e^-4	0.991	DOWNSTREAM CG11459 INTERGENIC
3L	14229984	3L_14229984_MNP [dm3] 3L_14236884_MNP [dm6]	TAT	ATA	4.353e^-4	0.991	UPSTREAM CG34244 INTRON CG7906	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19712888	2R_19712888_SNP [dm3] 2R_23825365_SNP [dm6]	C	T	4.362e^-4	0.991	UPSTREAM CG4763 INTRON CG5549
2R	20060982	2R_20060982_SNP [dm3] 2R_24173459_SNP [dm6]	C	T	4.364e^-4	0.991	UTR_3_PRIME CG3328 DOWNSTREAM mRpS17	TF binding site mE1_TFBS_chinmo
3R	5159116	3R_5159116_SNP [dm3] 3R_9333394_SNP [dm6]	C	T	4.371e^-4	0.991	NON_SYNONYMOUS_CODING CG8866	TF binding site mE1_TFBS_cad
2L	1605945	2L_1605945_SNP [dm3] 2L_1605945_SNP [dm6]	G	C	4.372e^-4	0.991	INTRON CG31935 & 1 other
2R	12289452	2R_12289452_SNP [dm3] 2R_16401947_SNP [dm6]	G	C	4.375e^-4	0.991	INTRON Sema-2b
X	8046415	X_8046415_SNP [dm3] X_8152382_SNP [dm6]	C	T	4.385e^-4	0.991	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5379781	3L_5379781_SNP [dm3] 3L_5386681_SNP [dm6]	T	C	4.392e^-4	0.991	INTERGENIC
2L	16176276	2L_16176276_SNP [dm3] 2L_16176276_SNP [dm6]	T	C	4.395e^-4	0.991	INTRON Ca-alpha1D	TF binding site mE1_TFBS_HSA
3L	14298375	3L_14298375_SNP [dm3] 3L_14305275_SNP [dm6]	G	A	4.396e^-4	0.991	INTRON fz
2L	6129868	2L_6129868_SNP [dm3] 2L_6129868_SNP [dm6]	G	A	4.397e^-4	0.991	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16079430	X_16079430_SNP [dm3] X_16185397_SNP [dm6]	A	T	4.401e^-4	0.991	INTERGENIC
X	2936401	X_2936401_SNP [dm3] X_3042368_SNP [dm6]	T	C	4.406e^-4	0.991	INTRON kirre	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6307690	2R_6307690_INS [dm3] 2R_10420185_INS [dm6]	A	TT	4.408e^-4	0.991	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2928942	2L_2928942_SNP [dm3] 2L_2928942_SNP [dm6]	G	C	4.419e^-4	0.991	INTRON lilli
X	5741781	X_5741781_SNP [dm3] X_5847748_SNP [dm6]	A	G	4.435e^-4	0.991	INTERGENIC
3L	14230216	3L_14230216_SNP [dm3] 3L_14237116_SNP [dm6]	A	T	4.440e^-4	0.991	NON_SYNONYMOUS_CODING CG7906	TF binding site mE1_TFBS_inv
3L	8838767	3L_8838767_SNP [dm3] 3L_8845667_SNP [dm6]	T	A	4.448e^-4	0.991	INTRON dally
2R	12366207	2R_12366207_SNP [dm3] 2R_16478702_SNP [dm6]	C	T	4.458e^-4	0.991	INTERGENIC
2R	6275725	2R_6275725_SNP [dm3] 2R_10388220_SNP [dm6]	G	T	4.461e^-4	0.991	SYNONYMOUS_CODING CG42732 INTRON CG42732
3L	17675750	3L_17675750_SNP [dm3] 3L_17682650_SNP [dm6]	A	T	4.463e^-4	0.991	INTRON CG34251
3R	18352341	3R_18352341_SNP [dm3] 3R_22526619_SNP [dm6]	T	C	4.467e^-4	0.991	INTRON CG5346	TF binding site BDTNP1_TFBS_dl
3R	13129488	3R_13129488_SNP [dm3] 3R_17303766_SNP [dm6]	T	G	4.473e^-4	0.991	INTERGENIC
3R	1868023	3R_1868023_SNP [dm3] 3R_6042301_SNP [dm6]	T	C	4.485e^-4	0.991	INTERGENIC
2R	5734620	2R_5734620_SNP [dm3] 2R_9847115_SNP [dm6]	A	G	4.499e^-4	0.991	NON_SYNONYMOUS_CODING Prosalpha7 UPSTREAM Orc6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	11436826	2R_11436826_SNP [dm3] 2R_15549321_SNP [dm6]	C	G	4.500e^-4	0.991	INTRON CG8192	TF binding site BDTNP1_TFBS_z
2R	6327394	2R_6327394_DEL [dm3] 2R_10439889_DEL [dm6]	CT	C	4.502e^-4	0.991	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
3L	14229993	3L_14229993_SNP [dm3] 3L_14236893_SNP [dm6]	T	A	4.504e^-4	0.991	UPSTREAM CG34244 INTRON CG7906	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17352083	2L_17352083_SNP [dm3] 2L_17352083_SNP [dm6]	T	C	4.505e^-4	0.991	INTERGENIC
2L	12853281	2L_12853281_SNP [dm3] 2L_12853281_SNP [dm6]	C	T	4.509e^-4	0.991	INTERGENIC
2R	17582064	2R_17582064_SNP [dm3] 2R_21694559_SNP [dm6]	G	A	4.510e^-4	0.991	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
2L	5457923	2L_5457923_SNP [dm3] 2L_5457923_SNP [dm6]	T	A	4.518e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	6987531	3L_6987531_SNP [dm3] 3L_6994431_SNP [dm6]	A	T	4.525e^-4	0.991	UTR_3_PRIME bin	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	14298376	3L_14298376_SNP [dm3] 3L_14305276_SNP [dm6]	A	G	4.526e^-4	0.991	INTRON fz
3R	20112921	3R_20112921_SNP [dm3] 3R_24287199_SNP [dm6]	T	C	4.536e^-4	0.991	INTRON CG6356	TF binding site mE1_TFBS_inv
3L	3668900	3L_3668900_SNP [dm3] 3L_3668900_SNP [dm6]	T	A	4.545e^-4	0.991	INTERGENIC
3L	18287505	3L_18287505_INS [dm3] 3L_18294405_INS [dm6]	C	AT	4.550e^-4	0.991	UPSTREAM CR43306 & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3R	21345462	3R_21345462_SNP [dm3] 3R_25519740_SNP [dm6]	C	T	4.561e^-4	0.991	INTRON msi
2L	17338524	2L_17338524_SNP [dm3] 2L_17338524_SNP [dm6]	T	G	4.565e^-4	0.991	INTERGENIC
2R	4146414	2R_4146414_SNP [dm3] 2R_8258909_SNP [dm6]	C	A	4.569e^-4	0.991	UPSTREAM CG30369 & 1 other INTERGENIC
2L	11012359	2L_11012359_SNP [dm3] 2L_11012359_SNP [dm6]	T	C	4.573e^-4	0.991	DOWNSTREAM dUTPase & 1 other INTERGENIC
2L	2590812	2L_2590812_SNP [dm3] 2L_2590812_SNP [dm6]	G	A	4.576e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	10348692	3R_10348692_SNP [dm3] 3R_14522970_SNP [dm6]	G	A	4.578e^-4	0.991	NON_SYNONYMOUS_CODING Cyp313a1 INTRON Pde6
X	8531442	X_8531442_SNP [dm3] X_8637409_SNP [dm6]	C	A	4.582e^-4	0.991	INTRON oc	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14797648	3L_14797648_SNP [dm3] 3L_14804548_SNP [dm6]	C	T	4.590e^-4	0.991	UPSTREAM CG17839 INTERGENIC
3R	20630622	3R_20630622_SNP [dm3] 3R_24804900_SNP [dm6]	G	T	4.601e^-4	0.991	SYNONYMOUS_CODING polybromo DOWNSTREAM CG5807	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	582878	2L_582878_SNP [dm3] 2L_582878_SNP [dm6]	G	A	4.604e^-4	0.991	DOWNSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12537666	2R_12537666_SNP [dm3] 2R_16650161_SNP [dm6]	G	C	4.610e^-4	0.991	UTR_3_PRIME gprs DOWNSTREAM Amyrel INTRON gprs
3R	14497385	3R_14497385_SNP [dm3] 3R_18671663_SNP [dm6]	G	A	4.610e^-4	0.991	UPSTREAM CG31230 INTRON CG7702	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18961825	3R_18961825_SNP [dm3] 3R_23136103_SNP [dm6]	A	G	4.617e^-4	0.991	INTRON hh	regulatory region REDfly_CRMs
3R	25919032	3R_25919032_SNP [dm3] 3R_30093310_SNP [dm6]	C	T	4.621e^-4	0.991	INTRON sima
X	19907328	X_19907328_SNP [dm3] X_20013295_SNP [dm6]	T	A	4.626e^-4	0.991	UTR_5_PRIME Dop2R INTRON Dop2R
X	16082816	X_16082816_SNP [dm3] X_16188783_SNP [dm6]	G	C	4.633e^-4	0.991	INTERGENIC
X	21353129	X_21353129_SNP [dm3] X_21482102_SNP [dm6]	A	G	4.642e^-4	0.991	UPSTREAM CR45510 DOWNSTREAM CR45511 INTERGENIC
2R	6430801	2R_6430801_SNP [dm3] 2R_10543296_SNP [dm6]	G	A	4.643e^-4	0.991	UPSTREAM lola INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	11936823	2L_11936823_SNP [dm3] 2L_11936823_SNP [dm6]	A	C	4.647e^-4	0.991	SYNONYMOUS_CODING Or33b
3R	7921735	3R_7921735_SNP [dm3] 3R_12096013_SNP [dm6]	C	T	4.649e^-4	0.991	UTR_5_PRIME dpr17 INTRON dpr17
2R	11943429	2R_11943429_SNP [dm3] 2R_16055924_SNP [dm6]	C	G	4.657e^-4	0.991	INTRON CG8405
3R	13530997	3R_13530997_SNP [dm3] 3R_17705275_SNP [dm6]	C	T	4.661e^-4	0.991	INTRON osa
2L	2160528	2L_2160528_SNP [dm3] 2L_2160528_SNP [dm6]	G	A	4.665e^-4	0.991	UTR_5_PRIME aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2R	6640577	2R_6640577_SNP [dm3] 2R_10753072_SNP [dm6]	C	G	4.678e^-4	0.991	INTRON CG33144
X	6104241	X_6104241_SNP [dm3] X_6210208_SNP [dm6]	A	G	4.695e^-4	0.991	INTERGENIC
3L	16755450	3L_16755450_SNP [dm3] 3L_16762350_SNP [dm6]	A	T	4.696e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8358638	2L_8358638_SNP [dm3] 2L_8358638_SNP [dm6]	A	T	4.698e^-4	0.991	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_twi
2R	1125279	2R_1125279_SNP [dm3] 2R_5237774_SNP [dm6]	T	C	4.699e^-4	0.991	INTRON Nipped-A	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
2L	4673619	2L_4673619_SNP [dm3] 2L_4673619_SNP [dm6]	A	G	4.704e^-4	0.991	INTERGENIC
3R	22823439	3R_22823439_SNP [dm3] 3R_26997717_SNP [dm6]	T	C	4.704e^-4	0.991	INTRON RYa-R
3L	14013641	3L_14013641_SNP [dm3] 3L_14020541_SNP [dm6]	A	G	4.706e^-4	0.991	UTR_3_PRIME ptip DOWNSTREAM upSET	TF binding site mE1_TFBS_kn
X	9647339	X_9647339_SNP [dm3] X_9753306_SNP [dm6]	T	G	4.719e^-4	0.991	SYNONYMOUS_CODING Sp1 UTR_5_PRIME Sp1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	5294812	2R_5294812_SNP [dm3] 2R_9407307_SNP [dm6]	T	C	4.720e^-4	0.991	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16018075	3L_16018075_SNP [dm3] 3L_16024975_SNP [dm6]	T	A	4.724e^-4	0.991	INTRON Notum	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	3737881	2L_3737881_SNP [dm3] 2L_3737881_SNP [dm6]	A	G	4.730e^-4	0.991	INTRON CG10019
3R	16506904	3R_16506904_SNP [dm3] 3R_20681182_SNP [dm6]	C	A	4.735e^-4	0.991	INTERGENIC
3R	5146770	3R_5146770_SNP [dm3] 3R_9321048_SNP [dm6]	A	T	4.737e^-4	0.991	UPSTREAM HP1e INTRON CG8861
2R	6307285	2R_6307285_INS [dm3] 2R_10419780_INS [dm6]	T	TT	4.750e^-4	0.991	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12163798	3L_12163798_SNP [dm3] 3L_12170698_SNP [dm6]	A	G	4.751e^-4	0.991	INTRON Rh7
X	13227028	X_13227028_SNP [dm3] X_13332995_SNP [dm6]	C	T	4.753e^-4	0.991	INTERGENIC
3L	18441628	3L_18441628_SNP [dm3] 3L_18448528_SNP [dm6]	T	A	4.771e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	2362702	3L_2362702_SNP [dm3] 3L_2362702_SNP [dm6]	T	G	4.772e^-4	0.991	DOWNSTREAM CG13801 INTERGENIC
X	8347953	X_8347953_SNP [dm3] X_8453920_SNP [dm6]	A	G	4.774e^-4	0.991	INTRON org-1
3L	4979575	3L_4979575_SNP [dm3] 3L_4979575_SNP [dm6]	G	A	4.786e^-4	0.991	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11018466	3L_11018466_SNP [dm3] 3L_11025366_SNP [dm6]	T	A	4.798e^-4	0.991	UPSTREAM CG32079 DOWNSTREAM Fad2 INTERGENIC
3R	21350348	3R_21350348_SNP [dm3] 3R_25524626_SNP [dm6]	G	C	4.804e^-4	0.991	INTRON msi
3R	10049175	3R_10049175_SNP [dm3] 3R_14223453_SNP [dm6]	T	C	4.809e^-4	0.991	SYNONYMOUS_CODING Sp212
3R	13102831	3R_13102831_SNP [dm3] 3R_17277109_SNP [dm6]	T	A	4.811e^-4	0.991	INTERGENIC
X	7228607	X_7228607_SNP [dm3] X_7334574_SNP [dm6]	A	G	4.817e^-4	0.991	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	17568448	2L_17568448_SNP [dm3] 2L_17568448_SNP [dm6]	C	T	4.817e^-4	0.991	INTERGENIC
2R	4063701	2R_4063701_SNP [dm3] 2R_8176196_SNP [dm6]	G	C	4.820e^-4	0.991	INTRON LRP1
2L	6450877	2L_6450877_SNP [dm3] 2L_6450877_SNP [dm6]	A	G	4.822e^-4	0.991	SYNONYMOUS_CODING retm	TF binding site mE1_TFBS_cad
3R	23547476	3R_23547476_SNP [dm3] 3R_27721754_SNP [dm6]	G	A	4.827e^-4	0.991	INTERGENIC
2L	10626823	2L_10626823_SNP [dm3] 2L_10626823_SNP [dm6]	A	G	4.831e^-4	0.991	SYNONYMOUS_CODING Trim9
2L	5252901	2L_5252901_SNP [dm3] 2L_5252901_SNP [dm6]	C	T	4.835e^-4	0.991	INTRON tkv
3R	1854764	3R_1854764_SNP [dm3] 3R_6029042_SNP [dm6]	A	T	4.836e^-4	0.991	DOWNSTREAM CR1075 INTERGENIC
2L	6901540	2L_6901540_SNP [dm3] 2L_6901540_SNP [dm6]	G	C	4.850e^-4	0.991	UPSTREAM mir-932 INTRON Nlg2
X	6781347	X_6781347_SNP [dm3] X_6887314_SNP [dm6]	T	C	4.857e^-4	0.991	INTERGENIC
X	2993823	X_2993823_SNP [dm3] X_3099790_SNP [dm6]	C	G	4.861e^-4	0.991	UTR_5_PRIME kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6620624	2L_6620624_INS [dm3] 2L_6620624_INS [dm6]	A	AG	4.862e^-4	0.991	INTRON CG11320
X	13902411	X_13902411_SNP [dm3] X_14008378_SNP [dm6]	C	T	4.880e^-4	0.991	INTERGENIC
3L	14229936	3L_14229936_SNP [dm3] 3L_14236836_SNP [dm6]	A	C	4.892e^-4	0.991	UPSTREAM CG34244 INTRON CG7906	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18924529	2L_18924529_SNP [dm3] 2L_18924529_SNP [dm6]	A	G	4.893e^-4	0.991	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	20807536	2L_20807536_SNP [dm3] 2L_20807536_SNP [dm6]	T	G	4.897e^-4	0.991	INTRON CG9328
2R	10642885	2R_10642885_SNP [dm3] 2R_14755380_SNP [dm6]	G	A	4.903e^-4	0.991	SYNONYMOUS_CODING CG10151	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	17986081	3R_17986081_SNP [dm3] 3R_22160359_SNP [dm6]	A	G	4.904e^-4	0.991	INTRON SKIP	TF binding site mE1_TFBS_Kr
X	4947645	X_4947645_DEL [dm3] X_5053612_DEL [dm6]	TTTT	G	4.906e^-4	0.991	INTRON CR44833 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	18774481	2L_18774481_SNP [dm3] 2L_18774481_SNP [dm6]	T	C	4.913e^-4	0.991	UPSTREAM CR43804 INTRON ham	TF binding site BDTNP1_TFBS_twi
3R	18982358	3R_18982358_SNP [dm3] 3R_23156636_SNP [dm6]	T	A	4.916e^-4	0.991	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6653942	2R_6653942_SNP [dm3] 2R_10766437_SNP [dm6]	A	G	4.918e^-4	0.991	INTRON CG33144
3R	2532413	3R_2532413_SNP [dm3] 3R_6706691_SNP [dm6]	T	A	4.918e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	6836596	3R_6836596_SNP [dm3] 3R_11010874_SNP [dm6]	G	T	4.919e^-4	0.991	INTRON CG34114
2L	2368227	2L_2368227_SNP [dm3] 2L_2368227_SNP [dm6]	T	A	4.924e^-4	0.991	INTRON Axud1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20326381	X_20326381_SNP [dm3] X_20455354_SNP [dm6]	C	A	4.925e^-4	0.991	INTRON CG32506
3L	1257753	3L_1257753_SNP [dm3] 3L_1257753_SNP [dm6]	C	T	4.927e^-4	0.991	INTRON CG9134
3R	17182512	3R_17182512_SNP [dm3] 3R_21356790_SNP [dm6]	G	A	4.939e^-4	0.991	DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 6 others
3R	14041423	3R_14041423_SNP [dm3] 3R_18215701_SNP [dm6]	G	T	4.941e^-4	0.991	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
2L	2313575	2L_2313575_SNP [dm3] 2L_2313575_SNP [dm6]	C	T	4.941e^-4	0.991	INTRON CG9967 & 1 other
3R	6641078	3R_6641078_SNP [dm3] 3R_10815356_SNP [dm6]	G	T	4.948e^-4	0.991	UTR_5_PRIME CG4089 UPSTREAM CG14693
X	4553631	X_4553631_SNP [dm3] X_4659598_SNP [dm6]	A	C	4.949e^-4	0.991	NON_SYNONYMOUS_CODING CG3009 INTRON CG3009	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	18536471	2L_18536471_SNP [dm3] 2L_18536471_SNP [dm6]	G	A	4.954e^-4	0.991	INTRON Pde11	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14229988	3L_14229988_SNP [dm3] 3L_14236888_SNP [dm6]	A	C	4.954e^-4	0.991	UPSTREAM CG34244 INTRON CG7906	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3003594	2L_3003594_SNP [dm3] 2L_3003594_SNP [dm6]	T	C	4.956e^-4	0.991	INTRON CG17265	TF binding site mE1_TFBS_cad
2L	4781448	2L_4781448_SNP [dm3] 2L_4781448_SNP [dm6]	C	T	4.967e^-4	0.991	INTRON CG15630
2R	20064422	2R_20064422_SNP [dm3] 2R_24176899_SNP [dm6]	T	C	4.968e^-4	0.991	SYNONYMOUS_CODING Nop60B DOWNSTREAM snoRNA:Psi18S-1820 INTRON Nop60B	TF binding site mE1_TFBS_cad
2R	18393610	2R_18393610_INS [dm3] 2R_22506105_INS [dm6]	T	CTCCAGTTCGGGC...	4.969e^-4	0.991	INTRON px	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25915748	3R_25915748_SNP [dm3] 3R_30090026_SNP [dm6]	T	A	4.969e^-4	0.991	INTRON sima	TF binding site mE1_TFBS_Trl
3L	16738452	3L_16738452_SNP [dm3] 3L_16745352_SNP [dm6]	G	A	4.974e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	21409971	3R_21409971_SNP [dm3] 3R_25584249_SNP [dm6]	A	C	4.975e^-4	0.991	UTR_5_PRIME msi INTRON msi
2R	20073932	2R_20073932_SNP [dm3] 2R_24186409_SNP [dm6]	A	C	4.980e^-4	0.991	UPSTREAM ocm DOWNSTREAM snoRNA:Me28S-G1083d & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	15200757	3R_15200757_SNP [dm3] 3R_19375035_SNP [dm6]	A	T	4.990e^-4	0.991	UPSTREAM CG3581 DOWNSTREAM CG31404 INTRON Ino80
2L	3000092	2L_3000092_SNP [dm3] 2L_3000092_SNP [dm6]	T	A	4.991e^-4	0.991	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17352080	2L_17352080_SNP [dm3] 2L_17352080_SNP [dm6]	T	C	4.995e^-4	0.991	INTERGENIC
3R	21640168	3R_21640168_SNP [dm3] 3R_25814446_SNP [dm6]	T	C	4.999e^-4	0.991	INTERGENIC
2L	8175158	2L_8175158_SNP [dm3] 2L_8175158_SNP [dm6]	A	G	5.000e^-4	0.991	INTRON Piezo
3L	17146160	3L_17146160_SNP [dm3] 3L_17153060_SNP [dm6]	C	A	5.002e^-4	0.991	INTRON Rbp6
3L	14230012	3L_14230012_INS [dm3] 3L_14236912_INS [dm6]	A	AATTAACA	5.012e^-4	0.991	UPSTREAM CG34244 INTRON CG7906	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18474767	2L_18474767_SNP [dm3] 2L_18474767_SNP [dm6]	G	A	5.020e^-4	0.991	INTRON CG10283
3R	9222412	3R_9222412_SNP [dm3] 3R_13396690_SNP [dm6]	G	A	5.024e^-4	0.991	DOWNSTREAM CG14374 INTERGENIC
X	4417111	X_4417111_SNP [dm3] X_4523078_SNP [dm6]	T	C	5.026e^-4	0.991	INTRON CR32773
3L	17157202	3L_17157202_SNP [dm3] 3L_17164102_SNP [dm6]	G	A	5.030e^-4	0.991	INTRON Rbp6
3L	17675781	3L_17675781_SNP [dm3] 3L_17682681_SNP [dm6]	T	A	5.032e^-4	0.991	INTRON CG34251
3R	6641075	3R_6641075_SNP [dm3] 3R_10815353_SNP [dm6]	T	A	5.034e^-4	0.991	UTR_5_PRIME CG4089 UPSTREAM CG14693
2R	15753036	2R_15753036_SNP [dm3] 2R_19865531_SNP [dm6]	G	A	5.037e^-4	0.991	INTRON Obp56i
3R	19145446	3R_19145446_DEL [dm3] 3R_23319724_DEL [dm6]	TCAAAAGGAAAGTATTTCCT...	C	5.042e^-4	0.991	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	13097864	3R_13097864_SNP [dm3] 3R_17272142_SNP [dm6]	A	G	5.050e^-4	0.991	INTERGENIC
3L	16868883	3L_16868883_SNP [dm3] 3L_16875783_SNP [dm6]	C	A	5.069e^-4	0.991	INTRON Lmpt	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	2699171	3R_2699171_SNP [dm3] 3R_6873449_SNP [dm6]	C	T	5.073e^-4	0.991	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	22741069	3R_22741069_SNP [dm3] 3R_26915347_SNP [dm6]	G	A	5.076e^-4	0.991	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27166882	3R_27166882_INS [dm3] 3R_31341160_INS [dm6]	C	CGC	5.085e^-4	0.991	INTRON CG34347
2R	14985992	2R_14985992_SNP [dm3] 2R_19098487_SNP [dm6]	G	C	5.086e^-4	0.991	INTRON 5-HT1A
3R	18982520	3R_18982520_SNP [dm3] 3R_23156798_SNP [dm6]	A	G	5.086e^-4	0.991	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	9245018	3R_9245018_SNP [dm3] 3R_13419296_SNP [dm6]	T	C	5.096e^-4	0.991	UPSTREAM Ir87a INTERGENIC
2R	19511381	2R_19511381_SNP [dm3] 2R_23623858_SNP [dm6]	C	A	5.105e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14229957	3L_14229957_DEL [dm3] 3L_14236857_DEL [dm6]	ATT	A	5.106e^-4	0.991	UPSTREAM CG34244 INTRON CG7906	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14041427	3R_14041427_SNP [dm3] 3R_18215705_SNP [dm6]	T	C	5.106e^-4	0.991	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
2L	17567577	2L_17567577_SNP [dm3] 2L_17567577_SNP [dm6]	T	A	5.115e^-4	0.991	INTERGENIC
2L	9720956	2L_9720956_SNP [dm3] 2L_9720956_SNP [dm6]	G	A	5.116e^-4	0.991	INTRON Nckx30C
3R	18992748	3R_18992748_SNP [dm3] 3R_23167026_SNP [dm6]	T	A	5.135e^-4	0.991	INTERGENIC
3L	2362706	3L_2362706_SNP [dm3] 3L_2362706_SNP [dm6]	G	A	5.143e^-4	0.991	DOWNSTREAM CG13801 INTERGENIC
3L	14578233	3L_14578233_SNP [dm3] 3L_14585133_SNP [dm6]	A	C	5.145e^-4	0.991	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14041420	3R_14041420_SNP [dm3] 3R_18215698_SNP [dm6]	C	T	5.148e^-4	0.991	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
3R	23569410	3R_23569410_SNP [dm3] 3R_27743688_SNP [dm6]	T	A	5.167e^-4	0.991	INTRON Ets98B	TF binding site mE1_TFBS_cad
2R	20061659	2R_20061659_SNP [dm3] 2R_24174136_SNP [dm6]	C	T	5.169e^-4	0.991	SYNONYMOUS_CODING mRpS17 UPSTREAM Nop60B DOWNSTREAM CG3328	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3L	17145925	3L_17145925_SNP [dm3] 3L_17152825_SNP [dm6]	A	G	5.173e^-4	0.991	INTRON Rbp6
3L	12451527	3L_12451527_SNP [dm3] 3L_12458427_SNP [dm6]	G	C	5.179e^-4	0.991	INTERGENIC
2L	17585769	2L_17585769_SNP [dm3] 2L_17585769_SNP [dm6]	A	T	5.182e^-4	0.991	UPSTREAM CR45112 INTERGENIC
2R	16926448	2R_16926448_DEL [dm3] 2R_21038943_DEL [dm6]	TT	T	5.208e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10938634	3L_10938634_SNP [dm3] 3L_10945534_SNP [dm6]	A	G	5.209e^-4	0.991	DOWNSTREAM CG34050 INTERGENIC
2L	4836950	2L_4836950_SNP [dm3] 2L_4836950_SNP [dm6]	C	G	5.215e^-4	0.991	SYNONYMOUS_CODING tank	TF binding site mE1_TFBS_sens
3R	21365646	3R_21365646_SNP [dm3] 3R_25539924_SNP [dm6]	T	G	5.219e^-4	0.991	INTRON msi
2L	1926177	2L_1926177_SNP [dm3] 2L_1926177_SNP [dm6]	C	G	5.221e^-4	0.991	INTRON CG7337
X	14589358	X_14589358_SNP [dm3] X_14695325_SNP [dm6]	G	C	5.238e^-4	0.991	INTRON NetB
2R	17081439	2R_17081439_SNP [dm3] 2R_21193934_SNP [dm6]	A	G	5.248e^-4	0.991	INTRON Lapsyn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	12949129	X_12949129_SNP [dm3] X_13055096_SNP [dm6]	T	A	5.249e^-4	0.991	DOWNSTREAM CR44840 INTRON rad & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	20156803	2R_20156803_SNP [dm3] 2R_24269280_SNP [dm6]	T	G	5.267e^-4	0.991	UPSTREAM CG13577 INTERGENIC
3L	16765262	3L_16765262_INS [dm3] 3L_16772162_INS [dm6]	T	TT	5.269e^-4	0.991	INTRON Nrt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	3964184	3R_3964184_SNP [dm3] 3R_8138462_SNP [dm6]	T	A	5.280e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1926174	2L_1926174_SNP [dm3] 2L_1926174_SNP [dm6]	C	G	5.281e^-4	0.991	INTRON CG7337
X	19890910	X_19890910_SNP [dm3] X_19996877_SNP [dm6]	T	C	5.282e^-4	0.991	INTERGENIC
2R	20171916	2R_20171916_SNP [dm3] 2R_24284393_SNP [dm6]	T	C	5.285e^-4	0.991	UPSTREAM nvy INTRON nvy
2L	4028631	2L_4028631_SNP [dm3] 2L_4028631_SNP [dm6]	C	G	5.287e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	11011101	3L_11011101_SNP [dm3] 3L_11018001_SNP [dm6]	G	T	5.290e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	18577704	3L_18577704_SNP [dm3] 3L_18584604_SNP [dm6]	C	G	5.301e^-4	0.991	DOWNSTREAM CR45435 INTERGENIC
X	2398982	X_2398982_SNP [dm3] X_2504949_SNP [dm6]	T	C	5.301e^-4	0.991	INTRON trol	TF binding site mE1_TFBS_cad
2R	3613005	2R_3613005_SNP [dm3] 2R_7725500_SNP [dm6]	C	T	5.302e^-4	0.991	INTRON CG18812
2L	2370257	2L_2370257_SNP [dm3] 2L_2370257_SNP [dm6]	C	G	5.303e^-4	0.991	UTR_3_PRIME CG3597 DOWNSTREAM Axud1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5883195	X_5883195_SNP [dm3] X_5989162_SNP [dm6]	G	C	5.304e^-4	0.991	UTR_5_PRIME CG5966
3R	11008653	3R_11008653_SNP [dm3] 3R_15182931_SNP [dm6]	A	C	5.320e^-4	0.991	INTRON Gyc88E
2L	10216876	2L_10216876_SNP [dm3] 2L_10216876_SNP [dm6]	G	A	5.326e^-4	0.991	SYNONYMOUS_CODING Npc1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27278891	3R_27278891_INS [dm3] 3R_31453169_INS [dm6]	A	ATTCATTTGA	5.329e^-4	0.991	INTRON Gprk2	TF binding site mE1_TFBS_cad
X	2920486	X_2920486_SNP [dm3] X_3026453_SNP [dm6]	T	A	5.332e^-4	0.991	INTRON kirre
2L	19060630	2L_19060630_SNP [dm3] 2L_19060630_SNP [dm6]	G	A	5.335e^-4	0.991	SYNONYMOUS_CODING Phlpp
2R	7987007	2R_7987007_SNP [dm3] 2R_12099502_SNP [dm6]	G	T	5.361e^-4	0.991	INTRON jeb	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16027195	2R_16027195_SNP [dm3] 2R_20139690_SNP [dm6]	G	A	5.374e^-4	0.991	INTERGENIC
X	5362394	X_5362394_SNP [dm3] X_5468361_SNP [dm6]	T	G	5.375e^-4	0.991	INTRON SPR
3R	18748185	3R_18748185_SNP [dm3] 3R_22922463_SNP [dm6]	T	A	5.383e^-4	0.991	UPSTREAM CG6660 INTRON klg	TF binding site mE1_TFBS_chinmo
2R	13531220	2R_13531220_SNP [dm3] 2R_17643715_SNP [dm6]	C	T	5.386e^-4	0.991	INTERGENIC
3L	12069908	3L_12069908_DEL [dm3] 3L_12076808_DEL [dm6]	GG	G	5.386e^-4	0.991	INTRON Sema-5c
3L	12069913	3L_12069913_SNP [dm3] 3L_12076813_SNP [dm6]	C	G	5.389e^-4	0.991	INTRON Sema-5c
3R	3412899	3R_3412899_SNP [dm3] 3R_7587177_SNP [dm6]	T	G	5.396e^-4	0.991	INTRON CG34127
X	5616941	X_5616941_SNP [dm3] X_5722908_SNP [dm6]	A	G	5.396e^-4	0.991	SYNONYMOUS_CODING CG32758	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20112906	3R_20112906_SNP [dm3] 3R_24287184_SNP [dm6]	C	T	5.400e^-4	0.991	INTRON CG6356	TF binding site mE1_TFBS_inv
X	5616926	X_5616926_SNP [dm3] X_5722893_SNP [dm6]	G	A	5.410e^-4	0.991	SYNONYMOUS_CODING CG32758	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13271290	3L_13271290_SNP [dm3] 3L_13278190_SNP [dm6]	G	A	5.410e^-4	0.991	UTR_3_PRIME caps
X	15315365	X_15315365_SNP [dm3] X_15421332_SNP [dm6]	G	A	5.433e^-4	0.991	UTR_5_PRIME Cngl
3L	11022582	3L_11022582_SNP [dm3] 3L_11029482_SNP [dm6]	C	A	5.436e^-4	0.991	DOWNSTREAM CG32081 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10189480	3L_10189480_SNP [dm3] 3L_10196380_SNP [dm6]	T	C	5.441e^-4	0.991	SYNONYMOUS_CODING ect	TF binding site mE1_TFBS_chinmo
3L	3473884	3L_3473884_SNP [dm3] 3L_3473884_SNP [dm6]	A	C	5.443e^-4	0.991	INTRON CG42324
2R	15094367	2R_15094367_SNP [dm3] 2R_19206862_SNP [dm6]	T	G	5.444e^-4	0.991	INTRON hppy
3R	9982372	3R_9982372_SNP [dm3] 3R_14156650_SNP [dm6]	C	A	5.448e^-4	0.991	NON_SYNONYMOUS_CODING CG31533 DOWNSTREAM CG31327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1977815	2L_1977815_SNP [dm3] 2L_1977815_SNP [dm6]	G	C	5.449e^-4	0.991	NON_SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9222381	3R_9222381_SNP [dm3] 3R_13396659_SNP [dm6]	T	G	5.451e^-4	0.991	DOWNSTREAM CG14374 INTERGENIC
2L	13560339	2L_13560339_SNP [dm3] 2L_13560339_SNP [dm6]	T	A	5.456e^-4	0.991	INTRON kuz
3R	13734219	3R_13734219_SNP [dm3] 3R_17908497_SNP [dm6]	C	T	5.457e^-4	0.991	INTRON Rim
3L	1783278	3L_1783278_SNP [dm3] 3L_1783278_SNP [dm6]	A	G	5.459e^-4	0.991	SYNONYMOUS_CODING alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5253589	2L_5253589_DEL [dm3] 2L_5253589_DEL [dm6]	TT	T	5.462e^-4	0.991	INTRON tkv	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9296615	3L_9296615_SNP [dm3] 3L_9303515_SNP [dm6]	G	A	5.464e^-4	0.991	INTERGENIC
3R	24798328	3R_24798328_SNP [dm3] 3R_28972606_SNP [dm6]	T	G	5.465e^-4	0.991	EXON CR45669
3L	4029502	3L_4029502_SNP [dm3] 3L_4029502_SNP [dm6]	C	A	5.465e^-4	0.991	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c DOWNSTREAM Gr64a
X	21351520	X_21351520_SNP [dm3] X_21480493_SNP [dm6]	G	C	5.475e^-4	0.991	UPSTREAM CR45509 DOWNSTREAM CR45510 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16544377	2L_16544377_DEL [dm3] 2L_16544377_DEL [dm6]	ATGATAGAGTAATCA...	A	5.486e^-4	0.991	UPSTREAM CG42389 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	18112916	3L_18112916_SNP [dm3] 3L_18119816_SNP [dm6]	A	C	5.487e^-4	0.991	UTR_5_PRIME CG7341 DOWNSTREAM CG32195	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17537355	2R_17537355_SNP [dm3] 2R_21649850_SNP [dm6]	A	C	5.491e^-4	0.991	DOWNSTREAM CG30284 INTRON CG10082	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1891228	3L_1891228_SNP [dm3] 3L_1891228_SNP [dm6]	A	G	5.494e^-4	0.991	UTR_3_PRIME Tmhs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	22489220	3R_22489220_SNP [dm3] 3R_26663498_SNP [dm6]	C	T	5.495e^-4	0.991	INTRON beat-VII
X	4782195	X_4782195_INS [dm3] X_4888162_INS [dm6]	A	ACTT	5.497e^-4	0.991	INTRON CG42594	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12395558	2R_12395558_DEL [dm3] 2R_16508053_DEL [dm6]	AC	G	5.504e^-4	0.991	INTRON Sema-2a
3R	15458873	3R_15458873_SNP [dm3] 3R_19633151_SNP [dm6]	T	A	5.504e^-4	0.991	UPSTREAM CG6231 DOWNSTREAM subdued INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22757617	3R_22757617_SNP [dm3] 3R_26931895_SNP [dm6]	T	C	5.518e^-4	0.991	INTRON sda
X	5582251	X_5582251_SNP [dm3] X_5688218_SNP [dm6]	T	C	5.519e^-4	0.991	SPLICE_SITE_REGION CG3160 INTRON CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20791440	2L_20791440_SNP [dm3] 2L_20791440_SNP [dm6]	T	C	5.521e^-4	0.991	SYNONYMOUS_CODING vari
3L	1047216	3L_1047216_SNP [dm3] 3L_1047216_SNP [dm6]	C	A	5.536e^-4	0.991	INTRON bab1
3R	12118071	3R_12118071_SNP [dm3] 3R_16292349_SNP [dm6]	T	A	5.544e^-4	0.991	INTRON gish	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10703451	3R_10703451_SNP [dm3] 3R_14877729_SNP [dm6]	A	C	5.548e^-4	0.991	INTERGENIC
3R	12936837	3R_12936837_SNP [dm3] 3R_17111115_SNP [dm6]	G	A	5.557e^-4	0.991	INTRON cher	TF binding site mE1_TFBS_cad
2R	16122793	2R_16122793_INS [dm3] 2R_20235288_INS [dm6]	A	AA	5.576e^-4	0.991	UTR_3_PRIME CG44624 UPSTREAM CG44625 & 1 other DOWNSTREAM CG11044
2L	13974090	2L_13974090_SNP [dm3] 2L_13974090_SNP [dm6]	A	G	5.576e^-4	0.991	UTR_3_PRIME NimC1 DOWNSTREAM NimC1
2R	8890670	2R_8890670_DEL [dm3] 2R_13003165_DEL [dm6]	GCCG	G	5.581e^-4	0.991		TF binding site mE1_TFBS_chinmo
2L	8442740	2L_8442740_SNP [dm3] 2L_8442740_SNP [dm6]	A	G	5.581e^-4	0.991	NON_SYNONYMOUS_CODING CG31897 DOWNSTREAM mus201
2R	19554233	2R_19554233_DEL [dm3] 2R_23666710_DEL [dm6]	AGGAAATA	A	5.582e^-4	0.991	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23569403	3R_23569403_SNP [dm3] 3R_27743681_SNP [dm6]	A	T	5.590e^-4	0.991	INTRON Ets98B	TF binding site mE1_TFBS_cad
3L	7434089	3L_7434089_SNP [dm3] 3L_7440989_SNP [dm6]	A	C	5.590e^-4	0.991	UPSTREAM sphinx2 INTRON CG42458	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2480939	2L_2480939_SNP [dm3] 2L_2480939_SNP [dm6]	A	T	5.597e^-4	0.991	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	14959125	3R_14959125_SNP [dm3] 3R_19133403_SNP [dm6]	A	C	5.598e^-4	0.991	INTRON Cyp12a5
2R	14268799	2R_14268799_SNP [dm3] 2R_18381294_SNP [dm6]	G	C	5.599e^-4	0.991	DOWNSTREAM CG43202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4444760	3L_4444760_SNP [dm3] 3L_4444760_SNP [dm6]	G	A	5.600e^-4	0.991	INTERGENIC
3L	13017082	3L_13017082_SNP [dm3] 3L_13023982_SNP [dm6]	G	A	5.600e^-4	0.991	UPSTREAM snoRNA:Me28S-A774a DOWNSTREAM snoRNA:Me28S-A774b & 1 other INTRON RpS12	TF binding site BDTNP1_TFBS_dl
2L	17575506	2L_17575506_SNP [dm3] 2L_17575506_SNP [dm6]	G	A	5.613e^-4	0.991	UPSTREAM CR45358 DOWNSTREAM mir-287 INTERGENIC
2R	19554242	2R_19554242_SNP [dm3] 2R_23666719_SNP [dm6]	A	C	5.614e^-4	0.991	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17352057	2L_17352057_SNP [dm3] 2L_17352057_SNP [dm6]	A	G	5.614e^-4	0.991	INTERGENIC
3L	20571814	3L_20571814_SNP [dm3] 3L_20578714_SNP [dm6]	T	C	5.620e^-4	0.991	INTERGENIC
2L	10453712	2L_10453712_SNP [dm3] 2L_10453712_SNP [dm6]	T	C	5.622e^-4	0.991	SYNONYMOUS_CODING CG5322
2L	12232224	2L_12232224_SNP [dm3] 2L_12232224_SNP [dm6]	A	C	5.630e^-4	0.991	INTRON aret
2L	5880441	2L_5880441_SNP [dm3] 2L_5880441_SNP [dm6]	C	A	5.636e^-4	0.991	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	17017841	2R_17017841_SNP [dm3] 2R_21130336_SNP [dm6]	T	C	5.641e^-4	0.991	DOWNSTREAM mago INTRON Magi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23033711	3L_23033711_SNP [dm3] 3L_23040611_SNP [dm6]	C	A	5.647e^-4	0.991	DOWNSTREAM nrm INTERGENIC	transposable element FlyBase
3R	18991258	3R_18991258_SNP [dm3] 3R_23165536_SNP [dm6]	C	G	5.657e^-4	0.991	INTERGENIC
X	8778284	X_8778284_INS [dm3] X_8884251_INS [dm6]	T	TT	5.658e^-4	0.991	INTRON Moe
2L	2357594	2L_2357594_SNP [dm3] 2L_2357594_SNP [dm6]	G	A	5.660e^-4	0.991	UPSTREAM CG9967 INTRON eys	TF binding site mE1_TFBS_HSA
3R	18012799	3R_18012799_SNP [dm3] 3R_22187077_SNP [dm6]	G	A	5.663e^-4	0.991	INTRON SKIP
3L	16657808	3L_16657808_SNP [dm3] 3L_16664708_SNP [dm6]	G	T	5.663e^-4	0.991	INTRON Galphaf
3R	23312659	3R_23312659_SNP [dm3] 3R_27486937_SNP [dm6]	G	T	5.666e^-4	0.991	UPSTREAM Gr98a INTERGENIC
2L	16470627	2L_16470627_SNP [dm3] 2L_16470627_SNP [dm6]	T	G	5.675e^-4	0.991	INTRON dac	regulatory region REDfly_CRMs
3L	12372953	3L_12372953_SNP [dm3] 3L_12379853_SNP [dm6]	G	A	5.681e^-4	0.991	INTRON Ncc69	TF binding site BDTNP1_TFBS_twi
3L	16830070	3L_16830070_SNP [dm3] 3L_16836970_SNP [dm6]	G	A	5.687e^-4	0.991	INTERGENIC
2L	15280056	2L_15280056_SNP [dm3] 2L_15280056_SNP [dm6]	C	A	5.689e^-4	0.991	DOWNSTREAM CR43682 EXON CR45349
3R	22453624	3R_22453624_DEL [dm3] 3R_26627902_DEL [dm6]	TT	T	5.694e^-4	0.991	UTR_3_PRIME TwdlK
X	8045787	X_8045787_SNP [dm3] X_8151754_SNP [dm6]	G	A	5.699e^-4	0.991	SYNONYMOUS_CODING Gbeta5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8361349	2L_8361349_SNP [dm3] 2L_8361349_SNP [dm6]	T	C	5.701e^-4	0.991	INTRON CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	5444339	X_5444339_SNP [dm3] X_5550306_SNP [dm6]	A	G	5.701e^-4	0.991	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr

Missing results

By genomic position
Variant impact
Gene name

Cuticul_8_C25_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results